BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (444 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammap... 908 0.0 UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteri... 615 e-175 UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein... 446 e-124 UniRef50_Q5QVE4 ATP-dependent RNA helicase n=2 Tax=Idiomarina Re... 369 e-100 UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 347 5e-94 UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospir... 325 2e-87 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 322 1e-86 UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Rein... 317 6e-85 UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 316 1e-84 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 313 6e-84 UniRef50_A6VWX2 DEAD/DEAH box helicase domain protein n=2 Tax=Ma... 311 2e-83 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 311 4e-83 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 306 1e-81 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 298 2e-79 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 297 6e-79 UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 ... 296 1e-78 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 293 1e-77 UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Ka... 293 1e-77 UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gam... 291 4e-77 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 290 9e-77 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 287 7e-76 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 285 2e-75 UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gamm... 284 4e-75 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 284 5e-75 UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammapr... 281 3e-74 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 281 5e-74 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 278 4e-73 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 276 8e-73 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 276 1e-72 UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 276 2e-72 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 275 2e-72 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 275 3e-72 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 274 5e-72 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 274 6e-72 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 274 6e-72 UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 ... 274 6e-72 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 274 6e-72 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 273 1e-71 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 273 1e-71 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 273 1e-71 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 272 2e-71 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 272 2e-71 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 271 3e-71 UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter ... 271 3e-71 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 271 3e-71 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 271 3e-71 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 271 3e-71 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 271 3e-71 UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algo... 271 5e-71 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 270 5e-71 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 270 6e-71 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 270 7e-71 UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter Re... 270 9e-71 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 270 1e-70 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 269 1e-70 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 269 1e-70 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 269 2e-70 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 268 2e-70 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 268 2e-70 UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 268 3e-70 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 268 3e-70 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 268 4e-70 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 267 7e-70 UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Pr... 267 7e-70 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 266 1e-69 UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteri... 266 1e-69 UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=c... 265 2e-69 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 265 2e-69 UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa ... 265 2e-69 UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME 265 2e-69 UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12... 265 3e-69 UniRef50_C4LEI7 DEAD/DEAH box helicase domain protein n=1 Tax=To... 264 4e-69 UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacte... 264 4e-69 UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Meth... 264 5e-69 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 263 8e-69 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 263 1e-68 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 262 2e-68 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 262 2e-68 UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12U... 261 3e-68 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 261 3e-68 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 261 4e-68 UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella ma... 261 5e-68 UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales ... 260 7e-68 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 260 7e-68 UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limn... 260 9e-68 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 259 1e-67 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 259 1e-67 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 259 1e-67 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 259 1e-67 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 259 1e-67 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 259 1e-67 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 259 2e-67 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 259 2e-67 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 259 2e-67 UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collins... 259 2e-67 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 258 2e-67 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 258 2e-67 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 258 2e-67 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 258 3e-67 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 258 3e-67 UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphi... 258 3e-67 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 258 3e-67 UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Lept... 258 3e-67 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 258 3e-67 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 258 4e-67 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 258 4e-67 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 257 7e-67 UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialiste... 256 8e-67 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 256 9e-67 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 256 1e-66 UniRef50_Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28 n=12 Tax=... 256 1e-66 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 256 1e-66 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 256 1e-66 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 256 2e-66 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 256 2e-66 UniRef50_C0Z3A8 AT4G16630 protein (Fragment) n=4 Tax=Viridiplant... 256 2e-66 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 255 2e-66 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 255 2e-66 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 255 3e-66 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 255 3e-66 UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 254 4e-66 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 254 4e-66 UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 254 4e-66 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 254 5e-66 UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI 254 6e-66 UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 254 6e-66 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 253 7e-66 UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacter... 253 7e-66 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 253 1e-65 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 253 1e-65 UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=G... 253 1e-65 UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammap... 253 1e-65 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 252 2e-65 UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candi... 252 2e-65 UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gl... 252 2e-65 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 252 2e-65 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 251 3e-65 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 251 3e-65 UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacteriu... 251 3e-65 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 251 4e-65 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 251 4e-65 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 251 4e-65 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 251 6e-65 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 251 6e-65 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 251 6e-65 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 250 6e-65 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 250 6e-65 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 250 7e-65 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 250 7e-65 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 250 7e-65 UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Ba... 250 7e-65 UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteob... 249 1e-64 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 249 1e-64 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 249 1e-64 UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 ... 249 1e-64 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 249 2e-64 UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 249 2e-64 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 249 2e-64 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 249 2e-64 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 248 2e-64 UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteri... 248 2e-64 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 248 2e-64 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 248 3e-64 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 248 3e-64 UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=De... 248 3e-64 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 248 3e-64 UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Pr... 248 3e-64 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 248 3e-64 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 248 3e-64 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 248 4e-64 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 248 4e-64 UniRef50_B8BT14 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 248 4e-64 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 247 6e-64 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 247 6e-64 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 247 6e-64 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 247 6e-64 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 247 7e-64 UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dicheloba... 247 7e-64 UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S... 247 7e-64 UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=A... 247 7e-64 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 246 9e-64 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 246 1e-63 UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Ta... 246 1e-63 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 246 1e-63 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 246 1e-63 UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family... 246 1e-63 UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter... 246 1e-63 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 246 2e-63 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 246 2e-63 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 246 2e-63 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 246 2e-63 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 246 2e-63 UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=G... 245 2e-63 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 245 2e-63 UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcr... 245 2e-63 UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammap... 245 2e-63 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 245 2e-63 UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836... 245 2e-63 UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 T... 245 2e-63 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 245 3e-63 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 245 3e-63 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 245 3e-63 UniRef50_Q5KIK3 ATP-dependent RNA helicase DRS1 n=2 Tax=Agaricom... 244 3e-63 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 244 5e-63 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 244 5e-63 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 244 5e-63 UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella gry... 244 5e-63 UniRef50_A6VX62 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 244 6e-63 UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Sacchar... 243 7e-63 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 243 1e-62 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 243 1e-62 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 243 1e-62 UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteure... 243 1e-62 UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera ... 243 1e-62 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 242 2e-62 UniRef50_B4RYM4 ATP-dependent RNA helicase, DEAD box family prot... 242 2e-62 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 242 2e-62 UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudom... 242 2e-62 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 242 2e-62 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 241 3e-62 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 241 3e-62 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 241 3e-62 UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=A... 241 3e-62 UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales ... 241 5e-62 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 241 5e-62 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 241 5e-62 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 241 6e-62 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 240 6e-62 UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=... 240 8e-62 UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 240 8e-62 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 240 9e-62 UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammapr... 240 9e-62 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 240 1e-61 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 240 1e-61 UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteob... 239 1e-61 UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encepha... 239 1e-61 UniRef50_D0N9A9 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 239 1e-61 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 239 1e-61 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 239 1e-61 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 239 1e-61 UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 239 1e-61 UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=... 239 1e-61 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 239 2e-61 UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 239 2e-61 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 239 2e-61 UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus K... 238 2e-61 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 238 3e-61 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 238 3e-61 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 238 3e-61 UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Ta... 238 3e-61 >UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammaproteobacteria RepID=SRMB_ECOLI Length = 444 Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL Sbjct: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA Sbjct: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH Sbjct: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 Query: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 RDTKNIGKRRKPSGTGVPPQTTEE Sbjct: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 >UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteriaceae RepID=C4K3R7_HAMD5 Length = 454 Score = 615 bits (1587), Expect = e-175, Method: Compositional matrix adjust. Identities = 306/435 (70%), Positives = 358/435 (82%), Gaps = 3/435 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F E +LD LL AL+DKG+ TAIQ IP A++GRD+LGSAPTGTGKT A+L+ Sbjct: 1 MMSPPFCEFDLDPCLLRALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAFLI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 PALQHL+DFP+KK GPPRILIL PTRELA+QV+D A ELAK+T L +A ITGGVAYMNH Sbjct: 61 PALQHLIDFPKKKPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHT 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E+FS NQDI+VATTGRLLQYIKEENFDCRAVE LILDEADRMLDMGFAQDIE I+ ETRW Sbjct: 121 EIFSTNQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRW 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 RKQTLLFSATLE I++F+ER+L DP+ + A PS RERKKI Q YYR+D+L HK ALL Sbjct: 181 RKQTLLFSATLESATIREFSERVLRDPIYLEAAPSVRERKKILQSYYRSDNLPHKIALLC 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +LLK P +SI+FVR RE+VHEL + L+ GI++ YLEGEMVQ KR EAI RL GR+ Sbjct: 241 YLLKTPSVQKSIIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQ 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVA+RG+DI D+SHVFNFDMP +GD YLHRIGRTARAGRKGTAISL+EAHDHLLL Sbjct: 301 VLVATDVASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHLLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK-- 418 KV RY+++ IK RV+DELRP T+AP+EK+ GKPSKKVLAKR E+KKAK+++ K Sbjct: 361 KKVERYLKKTIKPRVVDELRPTTKAPNEKKAGKPSKKVLAKREEQKKAKKEKTKVKVKVK 420 Query: 419 -RHRDTKNIGKRRKP 432 RHRD KN+GKRR+P Sbjct: 421 IRHRDKKNLGKRREP 435 >UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein n=108 Tax=Proteobacteria RepID=A1S988_SHEAM Length = 613 Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/377 (58%), Positives = 274/377 (72%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + +LD LLE+L+ G PT IQ IP A++ RD+L APTGTGKTA++LLPALQH Sbjct: 3 FEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQH 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+DFPR++ G PR+L+LTPTRELA Q+ +A LA + LDI ITGGV Y E+ Sbjct: 63 LIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKS 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N DI+VAT GRLL+Y+ + +F VE L++DEADRMLDMGF + ++ IA E RKQ + Sbjct: 123 NVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQAM 182 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATLEG + FA LL +P+ V + P E+ KIHQW + ADD +HK ALL HLLKQ Sbjct: 183 LFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLKQ 242 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 E R+IVF + R+ V L L++AGI ++ G+M Q KR +A+ R T+G VNVL+AT Sbjct: 243 EEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLAT 302 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARGIDI D++HV NFDMPRS DTY+HRIGRT RAG KGTAISLVEAHD +LGKV R Sbjct: 303 DVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVER 362 Query: 366 YIEEPIKARVIDELRPK 382 YIE+P+K RVI+ELRPK Sbjct: 363 YIEQPLKRRVIEELRPK 379 >UniRef50_Q5QVE4 ATP-dependent RNA helicase n=2 Tax=Idiomarina RepID=Q5QVE4_IDILO Length = 409 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 187/385 (48%), Positives = 252/385 (65%), Gaps = 4/385 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 + E +LD+ L+ L+D +P +Q +IP ALDGRD+L SAPTGTGKT A+LLPALQH Sbjct: 5 WEEFDLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTGTGKTLAFLLPALQH 64 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LLDFPR++ GP RIL+L PTRELA Q+ + A++ T L +TGG+ Y + V + Sbjct: 65 LLDFPRQQPGPARILVLAPTRELAEQIHEQAKQFEAKTGLTSVVVTGGINYGSQLSVLEK 124 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 DI+VAT GRL+ ++ E ++ +E LI+DEADRMLDMGFA ++ +A + R R+Q+L Sbjct: 125 THDILVATPGRLMDLLEAEQYNLEGIEWLIIDEADRMLDMGFAATVKEMALQARHRQQSL 184 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 L SATL + F+ LL +P + P RER KI QW + AD EHK LL+ +L Q Sbjct: 185 LLSATLNSSGVIKFSRELLTEPEYIDVQPPKRERGKILQWVHLADTDEHKRKLLMSVL-Q 243 Query: 246 PEATRSIVFVRKRERVHELANWLRE---AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 R VFVR RERV +AN+LR G L G+M Q R + L + L Sbjct: 244 AHPGRQFVFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTTEITL 303 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARG+D+ D++ V N+D+P+ D YLHRIGRTAR G+KGTA+SLVEAHD LLLG+ Sbjct: 304 VATDIAARGLDVDDITLVVNYDLPKQADVYLHRIGRTARGGQKGTAVSLVEAHDALLLGR 363 Query: 363 VGRYIEEPIKARVIDELRPKTRAPS 387 V RY++ + R I+ L+P+ + PS Sbjct: 364 VERYLDAKLDRRTIEGLKPQYKFPS 388 >UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SB31_CHRVI Length = 454 Score = 347 bits (890), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 192/430 (44%), Positives = 257/430 (59%), Gaps = 3/430 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T FSE L ++L+ L ++G+T PT +QA IP A+DG D+L SA TG+GKTAA+LLP + Sbjct: 3 THFSEFLLPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIM 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q +D PR G R LIL PTRELA Q+ H L +T L ITGG + + Sbjct: 63 QRFIDVPRH-DGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +N +I+VAT GRLL++++ + R +E L+LDEADRMLDMGFA D+ I +R +Q Sbjct: 122 RKNPEILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 +LLFSATLE + ERLL DP V +P ++ I +D LEHK L+ LL Sbjct: 182 SLLFSATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLL 241 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + ++++F RE L N+L+ L GE+ Q +RN + L GRVN L+ Sbjct: 242 RHETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLI 301 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+P V VFNFD+PR GD YLHR GRT RAG G AISLV + + + Sbjct: 302 ATDLAARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESI 361 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 RY+ + R I+ L+ + P+++ KPSK K A +EKPR K+R RD Sbjct: 362 ARYLNLTFEPREIEGLKASFKGPTKRN--KPSKPAATSGKRKSTAAAEEKPRKKERLRDR 419 Query: 424 KNIGKRRKPS 433 KNIGKRR P+ Sbjct: 420 KNIGKRRVPT 429 >UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EF0_THICR Length = 401 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 175/382 (45%), Positives = 236/382 (61%), Gaps = 9/382 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL+LD LL A++++ + +PT IQA AIP L +DVL A TGTGKTAA++LPALQ Sbjct: 2 TFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPALQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LLD PR S PR+LIL PTRELA Q+ ++L H + +TGG A E+ Sbjct: 62 FLLDDPRP-SRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQ 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD----IEHIAGETRW 180 DI+VAT GRLL + +E D +E LI+DEADRMLDMG D IE I G+ Sbjct: 121 SKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALIEAIPGDF-- 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q FSATL G I FAE +L+ P + N + ++I QW Y A+D HK ALL Sbjct: 179 --QAACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLK 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ +IVF K++R ELA+WL+ I++ L G+ +Q KR E ++ +G++ Sbjct: 237 AILEDETCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIK 296 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI +V+HV N+D+P GD Y+HRIGRT RA + G AI+LVE HD L Sbjct: 297 VLVATDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVERHDITNL 356 Query: 361 GKVGRYIEEPIKARVIDELRPK 382 ++ ++++ + I L P Sbjct: 357 QRIEYHLQQSLPVSKIKGLEPN 378 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 173/424 (40%), Positives = 246/424 (58%), Gaps = 6/424 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F LD S+L+A+Q+ G+ +PT IQ +IP + + VL SA TGTGKTAA++LP L Sbjct: 2 SFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILD 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L R + PR+LI++PTRELA Q++D ++ +++ ++ TITGG++Y +FS Sbjct: 62 KLTK-NRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMFS 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI+VAT GRLL +++ + + +E +ILDEADRMLDMGF DI I T ++Q Sbjct: 121 KPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQM 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L+FSAT + IQ A+ L +PV +S P K I Q Y AD+ HK +L H +K Sbjct: 181 LMFSATFD-PPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFIK 239 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 E T++I+F + +L++ L + I L G+M QG R + I R +LVA Sbjct: 240 NDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVA 299 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+A+RGID+ ++SHVFN+DMPR + Y+HRIGRT RA KG AISLV D L K+ Sbjct: 300 TDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKIE 359 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 R+ I+ I P A K+ P +K + KK K + KKR R Sbjct: 360 RFTNLKIEIASI----PGMEATILKEAKAPKRKSKGRSFVKKGKVFKNEANAKKRIRSKP 415 Query: 425 NIGK 428 GK Sbjct: 416 VFGK 419 >UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBH5_9GAMM Length = 448 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 181/433 (41%), Positives = 254/433 (58%), Gaps = 5/433 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ +L L A++ G+T PT +Q A+IP ALDG+D+L SA TG+GKTAAYLLPAL Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L + K+G R+L++ PTRELA QV L + T L I GG + A + Sbjct: 62 VLSERKPKAGI-RVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRR 120 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N +IV+AT GR+ +++ + + D VE L+LDE DRMLDMGF ++ IAG+ R QTL Sbjct: 121 NPEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDMGFRDEVLAIAGQIRNDHQTL 180 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 L SATL+ + A+ +L D + P + + I Q +D HKT L+ LL Sbjct: 181 LLSATLKHRGVSSVAKDILNDAEFIQIKPEMLQ-ENIRQQRIFSDGPAHKTKLVDWLLSH 239 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++IVF + R + ELAN LR L GE+ Q +RN + R +G V+V+VAT Sbjct: 240 ETFQKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVAT 299 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARG+D+ V V NFD+ +SGD ++HR+GRT RAG+ G A+SLV AHD+ L+ + R Sbjct: 300 DLAARGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIER 359 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKN 425 Y+ + R ID L+ K + P++ K S K + + +K K K R R TKN Sbjct: 360 YLGIRFEPREIDSLKAKYKGPAKV---KSSGKAVGHKKKKADTTTSRKKASKVRKRQTKN 416 Query: 426 IGKRRKPSGTGVP 438 IGKRR P+ T P Sbjct: 417 IGKRRAPAATSQP 429 >UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6Y6_9GAMM Length = 402 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/397 (43%), Positives = 236/397 (59%), Gaps = 1/397 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L LDESLL A DKG+ PT IQ AIP L G DVL A TGTGKTAA++LP LQ Sbjct: 3 FEDLMLDESLLLAASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLLQK 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LLD P P+ LIL PTRELA Q+ L K IA +TGG A Sbjct: 63 LLDEPNHGR-LPKALILAPTRELAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYLEN 121 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 DIV+AT GRLL ++ E D +E +++DEADRMLDMG D+ ++ QT Sbjct: 122 GCDIVIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQTS 181 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL G ++ FA LL + + + + + +++ Q Y AD+ EHK ALL ++KQ Sbjct: 182 LFSATLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREHKQALLAAVIKQ 241 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + +++F K+ER E++ +L+ I+ + G+ Q R E ++ +G+V LVAT Sbjct: 242 TDCESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALVAT 301 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+P VSHV N+D+P GD Y+HR+GRT RAG+ GTA++LVE HDH L +V Sbjct: 302 DVAARGLDLPQVSHVINYDVPFRGDIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQRVEH 361 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 +I +P+ + L PK ++ K K + +AK+ Sbjct: 362 HIGQPLPVLKMKGLTPKAKSNKTKSKNKDKPRYIAKK 398 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 230/378 (60%), Gaps = 1/378 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L L+ ++L A+++ G+T PT IQA AIP ++G D++ SA TGTGKTA ++LPAL Sbjct: 2 SFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPALN 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L +S PRIL+LTPTRELA QV++ AR+ K +I GG+ Y ++ S Sbjct: 62 LLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLLS 121 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI+VAT GRLL +++ D ++ LILDEADRMLDMGF D+E I + +QT Sbjct: 122 QPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQT 181 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSATL+GD I A+++L++P V + I Q + DD+ HK LL HLL Sbjct: 182 LLFSATLDGD-IARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLLI 240 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 PE ++I+F + LA L AG L G+M QG RN + +L G V VLVA Sbjct: 241 APEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVA 300 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+ ++HV N+D+P+ + Y+HRIGRT RA G AIS D LL K+ Sbjct: 301 TDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKIE 360 Query: 365 RYIEEPIKARVIDELRPK 382 +Y ++A VI+ PK Sbjct: 361 QYTGNRLEASVIEGFEPK 378 >UniRef50_A6VWX2 DEAD/DEAH box helicase domain protein n=2 Tax=Marinomonas RepID=A6VWX2_MARMS Length = 417 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 237/381 (62%), Gaps = 2/381 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+EL+LD ++ +A+ D GF PT IQ AIP ALDG D+L +APTGTGKT A+ PA+Q Sbjct: 18 SFAELDLDFTIEQAISDLGFEAPTEIQEQAIPIALDGSDLLATAPTGTGKTIAFCAPAVQ 77 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 H+LD + + P++LIL P+RELA Q+ + +L KHT + I GG Y + S Sbjct: 78 HILDRDEQSTTAPKVLILAPSRELARQIFNVVEQLTKHTRIQSHLIIGGTPYGMQQQQLS 137 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E DI+VAT GRL++ +++ D V ++DEADRMLDMGF I IA E QT Sbjct: 138 EPCDILVATPGRLVELDEKQWLDLTDVSYFVIDEADRMLDMGFVSAINCIAKELPKEHQT 197 Query: 185 LLFSATLEGDAIQDFAERLLEDPV-EVSANPSTRER-KKIHQWYYRADDLEHKTALLVHL 242 L+FSATLEG+ + FA LL ++ S+R +I Q YR D EHK A+L HL Sbjct: 198 LMFSATLEGEKMGRFASALLNSETQQIRLGESSRTVPSQIRQIAYRVDSEEHKEAVLKHL 257 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L Q ++++FV RE V +R+ G+ L GEM QG R+E +K++ GR+ VL Sbjct: 258 LTQERVQQAVLFVSNREHVDIWVQRIRKMGLMCDGLHGEMKQGDRSEHMKQMKRGRLQVL 317 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVA+RGID+P+++ V N +PR D+Y+HR GR +R G G ISL++ +D ++ K Sbjct: 318 VATDVASRGIDLPEINTVINLRLPRKADSYIHRAGRASREGEPGDCISLIDINDLPMIEK 377 Query: 363 VGRYIEEPIKARVIDELRPKT 383 + R+++ IK I+ L KT Sbjct: 378 IQRFMQANIKFGRIEGLEAKT 398 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 181/433 (41%), Positives = 250/433 (57%), Gaps = 10/433 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FSEL LD +L+++ G+ T +Q AIP AL G D+L S+ TG+GKTAA+LLP++Q Sbjct: 2 SFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 LL P KS PR+L+LTPTRELA+QV A K A + GG Y + Sbjct: 62 RLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 S+ D+VVAT GRL+ +++ D +E L+LDEADRMLDMGF DI+ IA +Q Sbjct: 122 SQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSATL+G + + A L D + + KI Q AD+++HK LL LL Sbjct: 182 TLLFSATLDG-VVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + E ++IVF + E+++ L E+G + L G+M QG+RN A++RL EGR VLV Sbjct: 241 RDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGID+ +SHV NFD+PR + Y+HRIGRT RAGR G A+S + L+ + Sbjct: 301 ATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRA--EKKKAKEKEKPRV----- 416 RY I+ + L P R PS + G + R EK+ ++ +PR Sbjct: 361 ERYTGNRIEVHTLPGLEPTQR-PSTGRPGNGRPRGNGPRGGYEKRSFGDRSEPRSYGDRP 419 Query: 417 KKRHRDTKNIGKR 429 + RD ++ G R Sbjct: 420 RGDSRDNRDRGYR 432 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 169/406 (41%), Positives = 238/406 (58%), Gaps = 20/406 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 + F+ L LD ++L AL + + PT +QA AIP L GRD+L S+ TG+GKTAA++LPA+ Sbjct: 58 SGFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAI 117 Query: 64 QHLLDFP-----------------RKKSGPPRILILTPTRELAMQVSDHARELAKHTH-L 105 Q + + P R P +L+LTPTRELA+QV++ A + ++ + Sbjct: 118 QRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRI 177 Query: 106 DIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDM 165 A+I GG+ Y ++ DI+VAT GRLL +I D A++ L+ DEADRMLDM Sbjct: 178 VCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDM 237 Query: 166 GFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 GFA DI+ I T +QTL+FSATL+ I A R L DP + + ++ I Q Sbjct: 238 GFADDIDAIVNATPATRQTLMFSATLDA-RIAQLASRQLRDPQRIEIAAARADQSHIEQR 296 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 + DD+ HK LL HLL+ ++IVF + LA L + G + L G+M QG Sbjct: 297 LHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQG 356 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 RN + L G + VLVATDVAARGID+PD++HV NFD+P+ + Y+HRIGRT RAGR Sbjct: 357 ARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRS 416 Query: 346 GTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQT 391 GTAI+LV +D ++ R+ + I A VI+ L P+ R+P + Sbjct: 417 GTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLEPR-RSPKPRSN 461 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 228/372 (61%), Gaps = 2/372 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+ L LD L+ AL+ T PT +QA A+P L GRD++ SA TGTGKTAA+LL Sbjct: 1 MQTNAFAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNH 119 PAL LL P +S PRIL+L PTREL QV+ A+E + K +++A++ GG ++ Sbjct: 61 PALSRLLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++ + +++VAT GRL+ ++ D +E L+LDEADRMLDMGF++D+ IA + Sbjct: 121 NQMLTRPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT F+AT+ + DFA+ LL +P ++ T + + I Q DD++HK L+ Sbjct: 181 KARQTAFFTATMT-RRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLV 239 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H+L QP+ ++IVFV + LA+ L GI L G+M Q R + RL G+ Sbjct: 240 RHILSQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQT 299 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARGID+ +SHV NFD+PR + Y+HR+GRT RAG GTA+SLV D Sbjct: 300 EVLVATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFP 359 Query: 360 LGKVGRYIEEPI 371 L K+ R+ + + Sbjct: 360 LKKIERFTGQKL 371 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 297 bits (760), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 163/349 (46%), Positives = 219/349 (62%), Gaps = 2/349 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS+L L LL+A+++ GFT PT IQ A+P AL GRDV+ SA TGTGKTAA++LP+L Sbjct: 8 VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 64 QHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 Q + R ++ PR+L+LTPTRELA QV + R L+K + TI GG+ Y E+ Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEM 127 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D++VAT GRL+ +++ D VE L+LDEADRMLDMGF + +E IA + Sbjct: 128 LRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAER 187 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLF+ATL+ A + A+ L DPV + ++ Q + RAD LEHK LL L Sbjct: 188 QTLLFTATLDRTA-ERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETL 246 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L E + IVF+ + LA+ L E G L G+M Q RN ++ L +GR+NV+ Sbjct: 247 LGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVI 306 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 351 VATDVAARGIDI D++HV NFD+P+ + Y+HRIGRT RAG G + SL Sbjct: 307 VATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSL 355 >UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PD22_CELJU Length = 493 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/453 (39%), Positives = 256/453 (56%), Gaps = 29/453 (6%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ F +L D L +A+ ++G+ +PT +Q AAIP AL+G+++L S+ TG+GKTAA+LLP Sbjct: 27 MSAFDDLIADTQLRKAIAEQGYEQPTEVQQAAIPRALEGKNLLVSSKTGSGKTAAFLLPC 86 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ +L R+LILTPTRELA Q+ +A+ L + T + + +I GG + Sbjct: 87 LQQILAQSAVNPRSTRLLILTPTRELARQIVKNAQSLLRFTSIKVGSICGGEELRYQKAL 146 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +N +IVVAT GRL +++ ++ D +E L+LDEADRMLDMG ++D+ I + Sbjct: 147 LRKNPEIVVATPGRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDAAR 206 Query: 183 QTLLFSATLEGDAIQDFAERLL-----EDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 QTLLFSATLE ++ ++++ E +E S+N +I Q ADD +HK Sbjct: 207 QTLLFSATLEQKGLRHLIKQVITGEAEEIYIEDSSN-------QIEQQMVLADDDKHKER 259 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L V LL + E ++IVFV + R +L N LR + + L G++ Q R ++ +G Sbjct: 260 LAVALLNRAEYQKAIVFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQG 319 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + VLVATDVAARG+DI V V N +M SGD YLHR+GRT RA + G A+S V A + Sbjct: 320 KTRVLVATDVAARGLDIDGVDLVINLEMAHSGDEYLHRVGRTGRADQPGRAVSFVSASEW 379 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSE-------------KQTGKPSKKVLAKRAE 404 L + RY++ ++ I L + P + GK KK Sbjct: 380 NLTKSIERYLKVSLQTIQIPGLEASYKGPDKLKKSGKAYGAKKKAADGKQDKKKGTTAGG 439 Query: 405 KKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGV 437 KK EK VK R R+ KNIGKRRKPSG GV Sbjct: 440 AKKITEK----VKVRERERKNIGKRRKPSGIGV 468 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 172/440 (39%), Positives = 247/440 (56%), Gaps = 7/440 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F LD+ +L+ ++ GFT+ T +Q IP AL +D++ A TG+GKTAA+++P LQH Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LL SG R LIL PTRELA Q+ + LAK T + ITGG + A +F + Sbjct: 62 LLTHKAPNSGT-RALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRK 120 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--RWRKQ 183 N +I++AT GRL+ ++K++ VE ILDEADRMLDMGF +D+ IA + + Q Sbjct: 121 NPEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKPQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSATL+ ++ +++ DP E+ + E I Q Y ADD +HK +L LL Sbjct: 181 TLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 E ++I+F +E+ + ++L + YL G+M Q +RN + ++ GR VLV Sbjct: 241 SNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI + V NFDM RSGD Y+HRIGRT RA G+AISL++ + L + Sbjct: 301 ATDVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSE-KQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 RY+ + + + + + P + K GK + K K + K + K R K RD Sbjct: 361 ERYLRVNMNHKYVKAIAGNYKGPKKVKGNGKAASKGKPKNKKDGKKGPQSKARPTKGKRD 420 Query: 423 TKNIGK---RRKPSGTGVPP 439 N K +R G G P Sbjct: 421 NSNKKKPTSKRTIWGDGTAP 440 >UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAU7_KANKD Length = 458 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 158/411 (38%), Positives = 237/411 (57%), Gaps = 1/411 (0%) Query: 10 ELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDF 69 EL L +A Q F P+ +Q AI P LDG DV+ SA TG+GKTAA+LLP + +LL+ Sbjct: 9 ELHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHNLLEN 68 Query: 70 PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDI 129 P + + R+LIL PTRELA Q+ HAR+L + T + I GG Y +F +N +I Sbjct: 69 PSRHTST-RVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIFRDNPEI 127 Query: 130 VVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSA 189 ++AT GR+L++ +++ D +E L++DEAD+M +MGF D++ IAG + +QTLLFSA Sbjct: 128 IIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDRQTLLFSA 187 Query: 190 TLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEAT 249 TL+ I+ + L+++P + N + I Q+ ADDL HK L LL E Sbjct: 188 TLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLTQWLLTNEEYR 247 Query: 250 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 309 ++IVF +E+V L +R I L G++ Q RN + + + ++ VL+A+DVAA Sbjct: 248 KAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIASDVAA 307 Query: 310 RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 369 RGID+ D+ V NFDM + + Y+HRIGRTARAG G A+SL+ + L+ + + I Sbjct: 308 RGIDVKDIDLVINFDMAHNAEDYIHRIGRTARAGETGKAVSLISHREWNLMVTIEKAISG 367 Query: 370 PIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + I EL + P + + + K+ KK +EK R +K+H Sbjct: 368 SFQLTSIKELPANYKGPKKLKASGKAAGHKKKKDGAKKLTAREKKRFEKKH 418 >UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gammaproteobacteria RepID=Q12PC3_SHEDO Length = 468 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 175/437 (40%), Positives = 246/437 (56%), Gaps = 9/437 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+ LD+ LL++L+ G T PT IQ A+P AL G+D++ S+ TG+GKT A+LLPA+Q Sbjct: 14 FSDFSLDKRLLDSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAMQR 73 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 ++ PR+LIL PTRELA QV R L +T +I GG + + A+ S Sbjct: 74 IISTKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKALSR 133 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI-AGETRWRKQT 184 +VAT GR+ ++++ + +E LILDEADRMLD+GFA + I A R+QT Sbjct: 134 EPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRRQT 193 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L+FSATLE D I + A LL+ P ++ + E I Q D L+HK ALL H+L Sbjct: 194 LMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHVLT 253 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + I+F R LA+ L + G L G + QG RN+ + + G+ +LV Sbjct: 254 NETNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQILVT 313 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVA+RG+D+ +VS V NFDMP+ + Y+HRIGRT RAG KG A+SLV D KV Sbjct: 314 TDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWDSFIKVQ 373 Query: 365 RYIEEPIKARVIDELRPKTRAPSEK-QTGK-PSKKVLAKRAEKKKAKE-KEKPRVKKRHR 421 ++ + + VID L+ K K +T K S K +AK A K K+ K P+ KR Sbjct: 374 AFLRKTFEFTVIDGLKAKFSGLKAKAKTDKVNSTKRVAKAASKAKSPHAKPAPKRDKRFS 433 Query: 422 DTKNIG-----KRRKPS 433 ++G ++ KPS Sbjct: 434 TGVDVGDAPMRRKVKPS 450 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 218/370 (58%), Gaps = 5/370 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F +L L E L+ AL +T PTAIQ AIPPA+ GRD+ G A TGTGKTAA+ LP L Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61 Query: 65 HLLDFPRK---KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L+ PR+ + PR L+L+PTRELA Q+ D R +H + TI GGV+ + + Sbjct: 62 RLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQVK 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + QD+++AT GRL +++ + +E +LDEADRMLDMGF DI I + + Sbjct: 122 GLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQQ 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 KQTLLFSAT+ + IQ A +LL DPVE++ P I Q Y +HK LL Sbjct: 182 KQTLLFSATMPPE-IQKLASQLLHDPVEINIEPERATADGITQSLYYVP-TKHKPELLAS 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +LK+ E TR++VFVR + ++ A L + G+ + G Q R + G + V Sbjct: 240 VLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQV 299 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ VSHV N+D+P +TY+HRIGRT RAG+ G AIS + LL Sbjct: 300 LVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLR 359 Query: 362 KVGRYIEEPI 371 V R + + I Sbjct: 360 DVQRILGKKI 369 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 287 bits (734), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 163/391 (41%), Positives = 225/391 (57%), Gaps = 13/391 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L + + +L AL+ G+T PT IQA AIP AL GRD+L SA TG+GKTAA+++P L Sbjct: 45 TFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLD 104 Query: 65 HL---LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 L F + + LILTPTRELA QV D R +K L + GG Y Sbjct: 105 RLSRATSFDKLT----KALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQI 160 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + ++VAT GRLL +I D ++E L+LDEADRMLDMGFA DI I Sbjct: 161 TALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPI 220 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT++ SAT +G + A ++P VS E I + Y DD +HK LL Sbjct: 221 DRQTIMCSATWDG-PVGKIAASFTKNPERVSIK---VESAHIEEKVYYCDDFDHKNRLLD 276 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + + I+F + +LA L+EAG +L G++ Q KRN ++ L G+ Sbjct: 277 KIVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCK 336 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+P +SHV N+D+PR + Y+HRIGR RAGR G AISL D L Sbjct: 337 ILVATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQL 396 Query: 361 GKVGRYIEEPIKARVIDELRP-KTRAPSEKQ 390 + RY++ ++A VI+ + P KT PSE + Sbjct: 397 NAINRYLDRKMEASVIEGMEPKKTYVPSENK 427 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 166/430 (38%), Positives = 238/430 (55%), Gaps = 22/430 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSE L + LL A++ G+ PT +Q +IP L+GRD++G A TGTGKTAA+ LP L Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L R + R L+LTPTRELA+Q+ D+ ++ ++ HL + GG Sbjct: 124 LTLLKRPRV---RALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRR 180 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 DI+VAT GRLL ++ ++ D +VE L+LDEADRMLDMGF D+ I T ++QTL Sbjct: 181 GADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTL 240 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 +FSAT+E + ++ A+R+L+DPV+V P + Q + E K ++ LL Sbjct: 241 MFSATMEKE-VRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSR-EDKREIIASLLTD 298 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +IVF R + +L+ L+ GI + + G+ QG+R +A+ R G+V V+VAT Sbjct: 299 EAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVAT 358 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DIP +SHVFN+D+P Y+HRIGRT RAG G AI+L + L +V Sbjct: 359 DVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEE 418 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKN 425 +E+PI EL+ + P L ++A K K R R KN Sbjct: 419 LLEKPIP-----ELQTQWSLP------------LERKARKGKGGRTRHGRSGYRSGGQKN 461 Query: 426 IGKRRKPSGT 435 GK +G+ Sbjct: 462 AGKSGHKTGS 471 >UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gammaproteobacteria RepID=Q21EB3_SACD2 Length = 436 Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 154/381 (40%), Positives = 223/381 (58%), Gaps = 2/381 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSEL L +SL +AL FT+PT +Q IP L G+D++ SA TG+GKTAA+LLP L Sbjct: 3 FSELGLHQSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPMLHK 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+ PR + R LIL PTRELA+Q + A +T + + I GG AY + + Sbjct: 63 FLNDPRPNTST-RALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATVRK 121 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N +++VAT GRL+++IK N D +E L+LDE+DRMLDMGF +++ IA +Q L Sbjct: 122 NPEVLVATPGRLVEHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQNL 181 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL+ I LL+DPV + + + I Q ADD HK L+V L+ + Sbjct: 182 LFSATLKHKGIGGITG-LLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKLIAE 240 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +A R IVF R + +++N LR + + Y+ GE+ Q R + + R +G++ VLVAT Sbjct: 241 EDAQRVIVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVLVAT 300 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DI DV V NF +GD ++HR+GRT R+ + G AI+L+ + + + R Sbjct: 301 DVAARGLDIKDVDLVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLISPKEFNPMSSIER 360 Query: 366 YIEEPIKARVIDELRPKTRAP 386 Y++ + R + L P Sbjct: 361 YLKIRLIPRKVKGLEGTYNGP 381 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 152/373 (40%), Positives = 219/373 (58%), Gaps = 7/373 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF + L+++LL+AL +G+T+PT IQ AIP + G+D+LG A TGTGKTAA+ LP L Sbjct: 16 TTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPIL 75 Query: 64 QHLLD---FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L + P+ ++ R+L+L+PTRELA Q+ D + H +A I GGV Y Sbjct: 76 HRLAENRIAPKPRT--TRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQE 133 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VA GRLL +I+++N D + E L+LDEAD+MLD+GF + I I Sbjct: 134 RALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPA 193 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q L FSAT+ + I A LL+DPV+V P + ++I Q + K ALL Sbjct: 194 KRQNLFFSATMPTE-IGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQ-GRKRALLT 251 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + PE TR +VF + + ++A +L G+ + G Q +R + +G++ Sbjct: 252 EMFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLR 311 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATD+AARGID+ VSHV NF++P + Y+HRIGRTARAG GTAIS V + LL Sbjct: 312 VLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLL 371 Query: 361 GKVGRYIEEPIKA 373 + + + I A Sbjct: 372 KDIEKVTRQKIPA 384 >UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammaproteobacteria RepID=Q4KGF7_PSEF5 Length = 473 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 156/382 (40%), Positives = 218/382 (57%), Gaps = 1/382 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 FS+ L E LL+A+ + F PT +QAAAIP AL GRD+ +A TG+GKTAA++LP L Sbjct: 28 VFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN 87 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ P K + LIL PTRELA Q ++ T + ITGG + A + Sbjct: 88 RLIG-PAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLR 146 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI++ T GR+L+ + N D + VE L+LDEADRMLDMGFA+D++ + E R+QT Sbjct: 147 KVPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQT 206 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT G +++ ++L +P + N ++ + Q AD +HK ++ LL Sbjct: 207 MLFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLA 266 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 ++IVF R + L L GE Q R AI RL +G V +LVA Sbjct: 267 NETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVA 326 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V NFDMPRSGD Y+HRIGRT RAG G AISL+ D L+ + Sbjct: 327 TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 386 Query: 365 RYIEEPIKARVIDELRPKTRAP 386 RY+++ + R I E++ P Sbjct: 387 RYLKQSFERRTIKEVKGTYSGP 408 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 281 bits (718), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 160/393 (40%), Positives = 226/393 (57%), Gaps = 20/393 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L SLL+++ G+T PT IQA AIP AL+GRD+L SA TG+GKTAA++LP L Sbjct: 71 FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130 Query: 66 LLDFPRKK-------SGP-----PRI---LILTPTRELAMQVSDHARELAK-HTHLDIAT 109 L + K+ SG P++ LILTPTRELA QV D R+ L Sbjct: 131 LSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVP 190 Query: 110 ITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQ 169 + GG AY + I+VAT GRLL +I + + + L+LDEADRMLDMGFA Sbjct: 191 LVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFAD 250 Query: 170 DIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA 229 DI I T +QT++ SAT +G + AE +DP ++ T I + Y Sbjct: 251 DINAILEATPAHRQTIMSSATWDG-PVGKIAESFTKDPERINIKVET---AHIDEKVYFC 306 Query: 230 DDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNE 289 D+ +HK LL L+ PE ++I+F + E+A L++ CYL G++ Q KRN Sbjct: 307 DNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNR 366 Query: 290 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 349 + L G+ +++VATDVAARG+D+P+++HVFN+D+PR + Y+HRIGR+ RAGR G AI Sbjct: 367 IVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAI 426 Query: 350 SLVEAHDHLLLGKVGRYIEEPIKARVIDELRPK 382 +L D G + RY++ I ++ L P+ Sbjct: 427 NLCSRDDRRQFGNIARYLKRDINEAQVEGLEPR 459 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 165/394 (41%), Positives = 229/394 (58%), Gaps = 11/394 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L LL+A+ D GF PT IQ AIP L+G +++G APTGTGKTAAYLLP LQ Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + ++ ++LI+TPTRELA+QV+D +L K+ + + GG A + Sbjct: 64 I-----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +++V T GR+L +I + F ++ +ILDEAD MLDMGF DIE I R+QTL Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL I+ ++ L V + I Q YY + E K LV +L Sbjct: 179 LFSATLPA-PIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSILNS 236 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++IVF R ++RV E+ L G L G+M Q +R + IK G+ +LVAT Sbjct: 237 ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVAT 296 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DIPDVSHV NFD+P++ ++Y+HRIGRT RAGR+G AI+L+ + LL + Sbjct: 297 DVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLL----K 352 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL 399 IEE I R+ E+ P+ E + K +KK+L Sbjct: 353 AIEEAINKRLKREILPEPVDLEEARFKKIAKKIL 386 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 153/377 (40%), Positives = 218/377 (57%), Gaps = 2/377 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FS L L + +A+ ++G+ P+ IQA AIP L G+DV+ +A TGTGKTA + LP L+ Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + K+G R L+LTPTRELA QVS+ K+ L A + GGV + Sbjct: 62 LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLR 121 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D++VAT GRLL +++ +E L+LDEADRMLDMGF +DI+ I ++Q Sbjct: 122 HGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQN 181 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L+FSAT D I++ A+ L+ PVE+S P + QW D K+ALL+ L+K Sbjct: 182 LMFSATFS-DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDK-NQKSALLIQLIK 239 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 Q + + +VF R + + LA L +A I+ + G QG R +A+ G V VLVA Sbjct: 240 QEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+DI + V NFD+P + Y+HRIGRT RAG G A+SLV + + LL + Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIE 359 Query: 365 RYIEEPIKARVIDELRP 381 R I ++ + I+ P Sbjct: 360 RLINRVLERQEIEGFGP 376 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 212/367 (57%), Gaps = 8/367 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L E LL A++ +G++ PT IQ AIPP L+G D+LG A TGTGKTAA+ LP LQ Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L + G R+L+LTPTRELA QV++ K+ L A + GGV E Sbjct: 63 LAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRR 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D++VAT GRLL + ++TL+LDEADRMLDMGF DI + R+QTL Sbjct: 123 GVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQTL 182 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ---WYYRADDLEHKTALLVHL 242 LFSAT+ D I A +L PV V + I Q + R+D K A+L H+ Sbjct: 183 LFSATMPPD-ILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSD----KRAMLEHV 237 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 LK P R+IVF R + + + L A I + G QG R A+ +G +VL Sbjct: 238 LKDPALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVL 297 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGIDI D+SHV N+D+P ++Y+HRIGRTARAG G A+S ++ + L Sbjct: 298 VATDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLAD 357 Query: 363 VGRYIEE 369 + R I++ Sbjct: 358 IERLIQK 364 >UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=B7RTE5_9GAMM Length = 440 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 157/424 (37%), Positives = 232/424 (54%), Gaps = 8/424 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 +LELD L L + + T +Q IP AL+G D+ SA TG+GKT AYLLP LQ Sbjct: 2 LQQLELDRGLRLGLDALEYEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQR 61 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L P + ++L PTRELA QV + R+L + T L ITGG + + + Sbjct: 62 ILSAPINRKAGALAVVLVPTRELARQVQKNCRDLMQKTQLGAQAITGGADFKYQRALLRK 121 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N ++++AT GRLL++ ++ + D +++TLILDEADRMLDMGF D+ +A +Q + Sbjct: 122 NPELIIATPGRLLEHCEKGSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAERQVI 181 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 + SATL+ + A+ LL DP + + + IH AD EHK LL L+ + Sbjct: 182 MLSATLKHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMDK 241 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 TR++VF KR LA L G+ L GEM +R + + + +V+++ A+ Sbjct: 242 GGFTRALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCAS 301 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ D+ V N+D+P+ GD YLHR GRT RAG G AISLV + L+ + R Sbjct: 302 DVAARGLDVKDIDLVVNYDLPQKGDDYLHRTGRTGRAGATGLAISLVSGLEWNLMVSIQR 361 Query: 366 YIEEPIKARVIDELRPKTRAPSE-KQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 Y+ + R + L+ + P + K +GK + KKK + + K R R+ K Sbjct: 362 YLNLEFEKRSLPGLKARYSGPKKTKGSGKSA-------GTKKKRSKSTADKSKTRARNQK 414 Query: 425 NIGK 428 + GK Sbjct: 415 SKGK 418 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 224/390 (57%), Gaps = 2/390 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+ L L E +L+A++ +G+ +P+ IQ A+P L G+DV+ +A TGTGKTA + LP L+ Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L PR + R L+LTPTRELA QV+ + + L + GGV + Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLR 121 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + D++VAT GRLL + +E L+LDEADRMLDMGF +DI I ++Q Sbjct: 122 KGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQN 181 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT D I+ A+ L+ +PVE+S +P+ + Q Y D + K +L L+K Sbjct: 182 LLFSATFSDD-IRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDK-KKKAPMLAKLIK 239 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + +VF + + ++LA +L E I + + G QG R +A++ G+V VLVA Sbjct: 240 DNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVA 299 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGIDIP + V NFD+P + Y+HRIGRT RAG G AISLV A + L + Sbjct: 300 TDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIE 359 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKP 394 R I++ ++ R ++ P + P + +P Sbjct: 360 RLIQQVLERRELEGFAPVNKLPESRLDSRP 389 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 169/410 (41%), Positives = 229/410 (55%), Gaps = 15/410 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TFS L+L SL + L++ GF RPT IQ AIPPAL+GRDVL A TG+GKT A+LLP L Sbjct: 4 TFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPILH 63 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ PR G R L+LTPTRELA Q+ + +++ HT L A + GGV F Sbjct: 64 QLMSKPR---GNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHAFR 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK-Q 183 D++VAT GRLL + ++ +E L+LDEADRMLDMGF +I+ I RK Q Sbjct: 121 SGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TL FSAT+ I + +L PV ++ K I Q Y E K+ALLV LL Sbjct: 181 TLFFSATMP-PPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQ-ELKSALLVALL 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K+ + +++VF R + R + LA+ L AGI + G Q +R +A+ +G VLV Sbjct: 239 KRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ + HV NFD+P + + Y+HR+GRTARA G A + V + L Sbjct: 299 ATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGEL--- 355 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 + IE R I P+ P KP++K+ AE+ K+K Sbjct: 356 -KLIE-----RAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKK 399 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 223/372 (59%), Gaps = 7/372 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF +L L SLL L+ +G+ PT IQA AIP L+ D+LG A TGTGKTAA+ LP Sbjct: 1 MTTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPI 60 Query: 63 LQHLLD---FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L H+L P +S R+L+L+PTRELA Q++D + +K L IATI GGV Y Sbjct: 61 LHHILSNRIIPAPRSC--RVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQ 118 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DI+VAT GRL+ +I+++ D +AVE L+LDEAD+MLDMGF + I +A Sbjct: 119 YKALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLP 178 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++Q L FSAT+ + I A LL +P +V P +++ Q + + K ALL Sbjct: 179 AQRQNLFFSATMPKE-IAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQ-QRKRALL 236 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L + R+++F R + +A +L+ G+ + G+ Q +R A++ GRV Sbjct: 237 SELYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRV 296 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 LVATD+AARGID+ +V+HV N+++P + Y+HRIGRTARAG++G +I+LV + L Sbjct: 297 RALVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKL 356 Query: 360 LGKVGRYIEEPI 371 L + R + I Sbjct: 357 LKDIERITRQRI 368 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/397 (38%), Positives = 232/397 (58%), Gaps = 2/397 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ ++F+EL L L L++ G+ +PT IQ+ AIP L G D+L A TGTGKTA++ L Sbjct: 1 MSASSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFAL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ L P P R L+L PTRELA+QV+D+ E + + + ++ GGV N Sbjct: 61 PIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL ++++ +E L+LDEADRMLD+GF I+ I Sbjct: 121 KRLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAAD 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLF+AT + ++++ AE L +P ++ P K+I Q+ Y+ D K +L Sbjct: 181 DRQTLLFTATAD-ESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQV-DYGQKADILS 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + + +++VFVR ++RV EL +L + GIN + GE Q +R + G ++ Sbjct: 239 YLITEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLH 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI + +V N+D+P + Y+HRIGRT RAG G A+SLV + L Sbjct: 299 VLVATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFL 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKK 397 ++ + I++ IK R + + R + KP K+ Sbjct: 359 QRIEKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKR 395 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 227/396 (57%), Gaps = 8/396 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TFS+L+LD + +A+ + G+T+PT IQ AIP LD D+LG A TGTGKTAA+ LP Sbjct: 5 IETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPM 64 Query: 63 LQHLLDFPRKKSGP--PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + +L+ R K P PR L+L PTRELA+QV + K+T + A I GGV A Sbjct: 65 IHNLIS-TRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQA 123 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + D+++AT GRL+ + + + +E +LDEADRMLDMGF DI I Sbjct: 124 KAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPK 183 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 R+Q L FSAT+ + I+ A +L +P+ + P + + I Q + L K LL+ Sbjct: 184 RRQNLFFSATMPPE-IEKLANSILVEPIRIDVTPVSSTVELISQSVMYTE-LADKKNLLL 241 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL K ++I+F + + ++++ L ++GI + G Q R A++ G+ Sbjct: 242 HLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNR 301 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATD+AARGIDI D++HV N+++P +TY+HRIGRTARAG+ G AI++ EA + L+ Sbjct: 302 ALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLI 361 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 + + I I +D P A E TGK K Sbjct: 362 KDIEKVIGISIP---VDRDHPYHAARVESHTGKAPK 394 >UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Moritella sp. PE36 RepID=A6FEC9_9GAMM Length = 460 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 242/417 (58%), Gaps = 12/417 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + +D L+ +++ GF + T +Q AAIP L G D++ ++ TG+GKT AY LP LQ Sbjct: 3 FQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L R + R +IL PTRELA+QV + + L I I G ++ + ++ + Sbjct: 63 MLKQRRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLLRK 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET-RWRKQT 184 N ++++AT GRLL +I+E++ +E L+LDEADRMLDMGF D+ I+ ++QT Sbjct: 123 NPEVLIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQT 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSATLE + + ++L P + N S + +KI Q + +D+L HK LVHL+K Sbjct: 183 MLFSATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVK 242 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + ++F + LA L + I+ + G+M+Q +R ++ GRV VLVA Sbjct: 243 SEDYRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVA 302 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+DI +SHV NFD+P + + ++HR GRT RAG G AISLV D GK+ Sbjct: 303 TDVAARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGKIQ 362 Query: 365 RYIEEPIKARVIDELRPKTRA----PSEKQ-----TGKPSKKVLAKRAEKKKAKEKE 412 Y++ + +++ K + P++K+ G+P+K LA++ +K K+K+ Sbjct: 363 SYLKVKLPCTMLEGFEAKFKGFKPKPAKKRLPVSNKGRPAK--LARKGDKNAPKQKQ 417 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 165/411 (40%), Positives = 238/411 (57%), Gaps = 23/411 (5%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF++L L +LEAL D G+ +P+ IQA IP L+GRDVLG A TG+GKTAA+ LP L Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 Q+L P K+ P+IL+L PTRELA+QV++ + +KH +++ + GG Y Sbjct: 66 QNL--DPELKA--PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + IVV T GRLL ++K D + L+LDEAD ML MGF +D+E I + Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ +AI+ R +++P EV S R I Q Y+ + AL V Sbjct: 182 QTALFSATMP-EAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL-VRF 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + +I+FVR + E+A L G N+ L G+M Q R + ++RL +GR+++L Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + LL Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL-- 357 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 R IE +K + P+ P+ + GK +R EK AK +++ Sbjct: 358 --RNIERTMKLTI-----PEVELPNAELLGK-------RRLEKFAAKVQQQ 394 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 214/375 (57%), Gaps = 6/375 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FS + +A+ ++ PT IQ IP L G+DVL SA TGTGKTAA+ LP L Sbjct: 2 SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61 Query: 65 HLLDFPR---KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + P+ K++ P +LIL+PTRELA Q+ + + +I ++ GGV+Y + Sbjct: 62 LVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQNK 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + N + +VAT GRL+ +K+ + + ++ L++DEADRMLDMGF DI+ I T Sbjct: 122 LLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQD 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q L+F+ATL I+ A++ L+DP ++ + K I Q Y D K +LV Sbjct: 182 QQVLMFTATL-NKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVD 240 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L + + ++I+F + L++ L + L G+M Q +R I R + + Sbjct: 241 VLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQI 300 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGID+ D++HV NFD+PR + Y+HRIGRT RA RKG AISLV + +L Sbjct: 301 LVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFMLQ 360 Query: 362 KVGRYIEEPIKARVI 376 K+ +Y IK VI Sbjct: 361 KIEKYAN--IKIEVI 373 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 150/361 (41%), Positives = 211/361 (58%), Gaps = 14/361 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+TTF +L L + +L+AL KG+ PT IQA AIPP L+GRD+LG A TGTGKTAA++L Sbjct: 1 MTITTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFML 60 Query: 61 PALQHLLDF----PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 P++ L + P K R+L+L PTRELA Q++ A++ L + +I GG + Sbjct: 61 PSIDRLREADNQTPFKSC---RMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSV 117 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 DI+VAT GRLL I ++ F AVE L+LDEAD+MLD+GF + I Sbjct: 118 GKDRNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQIND 177 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKT 236 +QTL FSAT+ IQ+ + +PV+VS P+ ++I Q+ + + K Sbjct: 178 LVPAERQTLFFSATMP-KQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQ-DEKQ 235 Query: 237 ALLVHLLKQPEAT-----RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 291 AL+ +LK A R +VF R + + LR+AGI + + G Q +R A+ Sbjct: 236 ALIEMILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRAL 295 Query: 292 KRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 351 + +L+ATDVAARGIDIP VSHV N+++P + Y+HRIGRTARAG+ G AI+ Sbjct: 296 DEFKRAKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAF 355 Query: 352 V 352 Sbjct: 356 C 356 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 218/367 (59%), Gaps = 4/367 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FSEL L + L+A+ D G+T T IQAAAIP AL G+DVLG A TGTGKTAA+ LP Sbjct: 1 MTEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + L++ R K+ PR L++ PTRELA QV+ + AK T L A + GGV++ + + Sbjct: 61 IDKLMNG-RAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKK 119 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRLL + + V+ L++DEADRMLDMGF DIE I T +K Sbjct: 120 LDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKK 179 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYR--ADDLEHKTALLV 240 QTL FSAT+ + I ++ L+DPV + A+ + I Q + + D + K L Sbjct: 180 QTLFFSATMPPE-ITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALR 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+++ + IVF ++ V +A L+ G + + G++ Q +R + + +G + Sbjct: 239 ALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLK 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVA+DVAARG+DIP VSHVFN+D+P D Y+HRIGRT RAGR G LV D Sbjct: 299 ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGF 358 Query: 361 GKVGRYI 367 KV + I Sbjct: 359 DKVVKLI 365 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 212/368 (57%), Gaps = 6/368 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF +L+L +L A+ D+G+ PT IQA IPP L G+DV+ SA TGTGKTA + LP L Sbjct: 5 VTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 64 QHLLDFPRKKSGPPR----ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 HL + P R LI+ PTRELAMQ+ + R+ K+ L + GGV Sbjct: 65 HHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQ 124 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +I+VAT GRLL ++ + + E L+LDEADRMLDMGF DI+ + Sbjct: 125 ITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLP 184 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++Q+L+FSAT D I+ A+ LL+ PV + + I +R E K ALL Sbjct: 185 SQRQSLMFSATF-SDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKP-ESKFALL 242 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +HL+KQ + +++VFV+ + +LA L I + G+ Q +R +A+ G V Sbjct: 243 LHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDV 302 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVAARGIDI +SHV N+++P + + Y+HRIGRT RAG KG AISLV H+ L Sbjct: 303 QILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETEL 362 Query: 360 LGKVGRYI 367 L + + + Sbjct: 363 LTSIEKLL 370 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/379 (39%), Positives = 223/379 (58%), Gaps = 7/379 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF L + +L+A+ + GFT P+ +QA AIP L G D++ A TGTGKTAA+ LP Sbjct: 1 MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + ++D + + ++L++TPTRELA QVSD L + + TI GG +Y + Sbjct: 61 MS-MIDANQNRV---QLLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGL 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + ++VAT GR+L +K A + ++LDEAD MLDMGF +DIE I + Sbjct: 117 IEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE-RKKIHQWYYRADDLEHKTALLVH 241 QTLLFSAT+ + I+ A ++L +P VS P + I Q YY ++ E A+ + Sbjct: 177 QTLLFSATMP-EPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAM-IR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL E +SIVF R ++ V L+ L G L G+M Q +R IK ++ + Sbjct: 235 LLDALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEI 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+++ D+SHVFN+ MP ++Y+HRIGRT RAG+KGTAI+LV + + Sbjct: 295 LVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQ 354 Query: 362 KVGRYIEEPIKARVIDELR 380 ++G+ + I+ R++ LR Sbjct: 355 RIGKKVGSKIEHRIVPNLR 373 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 217/371 (58%), Gaps = 2/371 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M++ F + L+ S+L AL++ G+ PTAIQAAAIP A+ G+D+L +A TGTGKTAA+ L Sbjct: 1 MSLINFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFAL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L L + PR LILTPTRELA+Q+ ++ R A++ L I GGV Sbjct: 61 PILHRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++ N DI+VAT GRL+ + ++T +LDEADRMLDMGF DI I Sbjct: 121 KMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPR 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 QTLLFSATL + I+ A R+L +PV + P + I Q + +K LL Sbjct: 181 DHQTLLFSATLSPE-IEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQ-NNKRELLH 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L K+ + R++VF R ++R + +A L GI+ + Q R A+ G++N Sbjct: 239 NLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKIN 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATD+AARGID+ +SHV N+++P + Y+HRIGRTARAG GTA+S +A + +L Sbjct: 299 VLVATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRML 358 Query: 361 GKVGRYIEEPI 371 + + + I Sbjct: 359 KGIEKLTKSSI 369 >UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JG19_9ALTE Length = 463 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 152/397 (38%), Positives = 234/397 (58%), Gaps = 11/397 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+L LD L +A+ GF T IQA +P L +D++G A TGTGKTAA+L+ A+Q Sbjct: 44 FSDLNLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAIQT 103 Query: 66 LLDFP----RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY-MNHA 120 +L+ P ++ + PR+L L PTRELAMQ++ A +L HT + T+ GG+ Y Sbjct: 104 MLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRD 163 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET-- 178 ++ +E DI+VAT GRL+ ++ ++ ++ LILDEADRMLDMGF D++ I + Sbjct: 164 QLQNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTP 223 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 + +QTLLFSAT D + + A + V P + +++ Q Y D + K + Sbjct: 224 KEDRQTLLFSATFNQDVL-NLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGD-DEKLRV 281 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 LV+ LK+PE +++VF +R++ +L LR G++ + GE+ Q KR + +++ G Sbjct: 282 LVNYLKRPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGS 341 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + VLVATDVA RGI + V+HVFN+++P + + Y+HRIGRT RAG G +IS D Sbjct: 342 IQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDSF 401 Query: 359 LLGKVGRYIEEPIKARVIDE--LRPKTRAPSEKQTGK 393 L + +YI + + V DE + P AP ++ G+ Sbjct: 402 ALPAIEKYIGQKLANEVPDEALMVPMDNAPIARKRGR 438 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 220/368 (59%), Gaps = 7/368 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++L L ES+L+++ + GFT P+ IQ AIP L GRDV+ A TGTGKTAA+ LP + Sbjct: 23 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 82 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L K + L++TPTRELAMQ+SD +L KHT + GG + E Sbjct: 83 NL-----KNNHTIEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIK 137 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +N +++AT GRLL ++K + + ++LDE+D MLDMGF DIE I Q Sbjct: 138 KNPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQI 197 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + I+ A+++LE+P+++ PS I Q +Y ++ E A++ HLL Sbjct: 198 LLFSATMP-EPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIM-HLLD 255 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +SIVF R ++ EL +L + L G+M Q R +I + +VLVA Sbjct: 256 TQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 315 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVA+RG+DI VSHVFN+ +P + ++Y+HRIGRT RAG+KG AI+LV ++ L ++ Sbjct: 316 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 375 Query: 365 RYIEEPIK 372 + I+ I+ Sbjct: 376 KEIDSEIE 383 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 162/435 (37%), Positives = 243/435 (55%), Gaps = 17/435 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F + D ++ + G+ PT IQ AIP L GRDV+G A TGTGKTAA+ LP +Q Sbjct: 2 SFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL+ GP R+L+L PTRELA+Q+ ++ EL + A + GGV M + + Sbjct: 62 RLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQA-A 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 ++VA GRLL + + V+TL+LDEADRMLDMGF DI I + R+Q Sbjct: 121 RRSSVIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQN 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ D I+D A+++L P V + + H +Y + L K LL +L+ Sbjct: 181 LLFSATMPDD-IRDLADKILYRPATVQVANTAPAKTVEHVFYPVSQHL--KNNLLFKVLE 237 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 Q + +VF R + + LA L G +L+G M Q +R A+ +G V+VA Sbjct: 238 QTDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVA 297 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGID ++HV N D+P + +TY HRIGRT RAGR G+A S V D L+ ++ Sbjct: 298 TDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIE 357 Query: 365 RYIEEPIKARVIDEL---RPKTR-APSEKQTG-KPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + I+ R +++ +P T AP+++ G KP+ A++K A E+ +P ++ Sbjct: 358 KAVGYSIEHRTLEDFDYDKPNTHPAPAKRGGGRKPA-------ADRKPAGER-RPGRGRK 409 Query: 420 HRDTKNIGKRRKPSG 434 + ++ + RKP+G Sbjct: 410 PAEARDGDESRKPAG 424 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 170/418 (40%), Positives = 236/418 (56%), Gaps = 14/418 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L +LL AL ++G+ PT IQA +IP L+GRD+LG A TGTGKTAA+ LP L Sbjct: 4 TFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLH 63 Query: 65 HLLDFPRKK-SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L PR G R+L+L PTREL Q++D +H + TI GGV+ ++ Sbjct: 64 RLAMAPRPAPKGGARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQVNAL 123 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI+VA GRLL I + D +E L+LDEAD+MLDMGFA+ IE I + Sbjct: 124 KAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDRH 183 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ +I AE LL DP +V P + +I Q D + K AL + +L Sbjct: 184 TVLFSATMP-KSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAAL-LAML 241 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + P +++VF ++ +E+ ++ EAGI L G QG+R A+ G VLV Sbjct: 242 RTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVLV 301 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ V+HVFN D+P ++Y+HRIGRT RAGR G AI+L +A L V Sbjct: 302 ATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLRDV 361 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQT-------GKPSKKVLA-KRAEKKKAKEKEK 413 R I +A ++ + P + T G P+K+V K+ E+K E+EK Sbjct: 362 EREIG---RALIVQDDHPWHSEAARNSTMRPPVLGGAPAKEVKPQKKRERKVWTEEEK 416 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 161/406 (39%), Positives = 237/406 (58%), Gaps = 12/406 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F +L + + AL+ KG++ PT IQ AIP LDG+D+LG A TGTGKTAA+ +P Sbjct: 1 MTDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPL 60 Query: 63 LQHLLDFPRKKSGPP--RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LQ LL+ R ++ P R LILTPTRELA Q++ + + A T + + + GGV + Sbjct: 61 LQRLLE-SRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQF 119 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 D++VAT GRLL ++ +E +LDEAD+MLD+GF ++E IA Sbjct: 120 HALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPK 179 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QTL FSAT+ + I+D +ER L +PVEVS P + + Q + + K LL Sbjct: 180 KRQTLFFSATMPRE-IRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEK-DAKFPLLK 237 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL++ E R++VF ++ LA L G+ + G+M Q +R + + + G++ Sbjct: 238 ELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLK 297 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATDVAARGID+ D+SHV NFDMP + + Y+HRIGRTARAG+ GTAI+ D +L Sbjct: 298 TLVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGML 357 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPS--EKQTGKPSKKVLAKRAE 404 + + I + I E+ T PS E ++ + + +V KRA+ Sbjct: 358 RAIQKLI-----GKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAK 398 >UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9SPHI Length = 399 Score = 271 bits (692), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 142/350 (40%), Positives = 202/350 (57%), Gaps = 5/350 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T+F+ L LD ++ L +KG+ T IQ +I L+GRD+LG + TG+GKT A+L+P + Sbjct: 55 TSFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPII 114 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 +H L P G LI+TPTRELA+Q+ + L+K L AT GG +V Sbjct: 115 EHALKNP----GQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVL 170 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 S ++V T GRLL + V+TL+LDE DRMLDMGF D++ + G R+Q Sbjct: 171 SRKLHVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQ 230 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSATLE + ++ + LL++PVEV N + I Q R + + K +L L Sbjct: 231 TMLFSATLEPNQ-KNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKFGMLADLF 289 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + IVF + L+ L +AG+ + + G Q RN+ I++ G VLV Sbjct: 290 QNRAMDKVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLV 349 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 ATDVAARGID+ DVSHV N+ +P + D+Y+HRIGRT RAG+ G AI+ V Sbjct: 350 ATDVAARGIDVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAITFVN 399 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 270 bits (691), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 241/411 (58%), Gaps = 7/411 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+ L++ +QD + PT IQ AIP ++G+D++G A TGTGKTAA++LP L Sbjct: 4 SFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILN 63 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + R + LILTPTREL++Q++ +L KH ++++ ++ GG Sbjct: 64 ALDEGKR----DIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLK 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E IVV T GR+L ++K + + TL+LDEAD+M++MGF +D+E + T ++Q Sbjct: 120 ETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQV 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ D ++ A R ++ P + + ++I Q+YY + + KT LV +L+ Sbjct: 180 LLFSATMP-DLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSD-KTDALVDVLE 237 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 Q + +IVF + RV +L L+E G++ L G++ Q KR + +K+ E R L+A Sbjct: 238 QEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIA 297 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+D+ V+HV N+D+P D+Y+HR+GRT RAG+KG AISL+ L+ + Sbjct: 298 TDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFA 357 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + + I+ R++ E R A ++ + + RA++ K ++KEK + Sbjct: 358 KATKASIEERILQEGR-HLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDK 407 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 270 bits (691), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 211/367 (57%), Gaps = 4/367 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +L L E L A+ G+T PT +Q AIP L GRDV+ +A TGTGKTAA+ LP + Sbjct: 4 TFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTMD 63 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L R GP +LI+TPTRELA+Q+ R +AK + + + GGV+Y + Sbjct: 64 RL-GHARHGQGPL-LLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLR 121 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+++AT GRL+ + ++ VETL+LDEADRMLDMGF D+ I ++QT Sbjct: 122 RGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQT 181 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT++ AI+D LL +PV V I Q+ D HK LL+ LL Sbjct: 182 LLFSATIDS-AIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDH-RHKNDLLIALLN 239 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + TR IVF R R RV LR+AG + + Q +R AI+ L G+ ++LVA Sbjct: 240 ERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVA 299 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDV ARGIDIP+V++V N DMP + Y+HRIGRT RAG G AIS V + +L + Sbjct: 300 TDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQ 359 Query: 365 RYIEEPI 371 + I + I Sbjct: 360 KLIGKDI 366 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 217/378 (57%), Gaps = 8/378 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L L +L A+ D+G+ PT IQA IP L G+DV+ SA TGTGKTA + LP L Sbjct: 5 VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 64 QHLLDFPRKKSGPPR----ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L + P R LI+ PTRELAMQ+ + R+ K+ L A + GG+ Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQ 124 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +I+VAT GRLL ++++ + E L+LDEADRMLDMGF DI+ + Sbjct: 125 IAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLS 184 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKI-HQWYYRADDLEHKTAL 238 ++Q+L+FSAT G+ I+ A+ LL+ PV + A + I H ++ D K AL Sbjct: 185 PQRQSLMFSATFSGE-IRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPD--SKFAL 241 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L+HL++Q ++++FV+ + LA L I+ + G+ Q +R +A+ G Sbjct: 242 LLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGD 301 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 V +LVATDVAARGIDI +SHV N+++P + + Y+HRIGRT RAG KG AISLV H+ Sbjct: 302 VQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKE 361 Query: 359 LLGKVGRYIEEPIKARVI 376 LL + + + ++ I Sbjct: 362 LLANIEKLLNAKLETEQI 379 >UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter RepID=B7IA63_ACIB5 Length = 615 Score = 270 bits (690), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 15/380 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+E L E+L +AL+ GFT PT +Q +IP AL+G+D+L S+ TG+GKTAA+LLP L Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63 Query: 65 HL------LDFPRKKSG--PPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVA 115 +L + F + P IL+L PTRELA QVS A +H + IA I GG+ Sbjct: 64 NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 116 YMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA 175 + + Q +VVAT GRLL + V+ LI+DEADRMLD+GF++D+E I+ Sbjct: 124 FGKQIQQLKGAQ-VVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 176 GETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 R QTL+FSAT D I AER++ +P ++ I Q + D EHK Sbjct: 183 DLAANRGQTLMFSATF-ADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK 241 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL H L +++VF +E LA L EAG + L G M Q RN ++ + Sbjct: 242 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 EGR +LVATDVAARG+D+P +SHV NF +P + Y+HRIGRT RAGR G AI+L Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361 Query: 356 DHLLLGKVGRYIEEPIKARV 375 + GK+ R +E+ ++AR+ Sbjct: 362 ER---GKI-RALEDYLEARL 377 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 153/389 (39%), Positives = 226/389 (58%), Gaps = 7/389 (1%) Query: 22 KGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFP----RKKSGPP 77 KG+ +PTAIQA AIP L GRD++ SA TGTGKTAA+ LP LQ L+D + K+ Sbjct: 43 KGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRA 102 Query: 78 RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 +L+L PTRELA+QV+ + + A +T + I GGV+ A + D++VAT GRL Sbjct: 103 SVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATPGRL 162 Query: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 L +++ + +E L+ DEADRMLDMGF +I I + ++QTLLFSAT AI Sbjct: 163 LDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSS-AIF 221 Query: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRK 257 + +++LL+ P+ + + + I Q Y D E KT LL HL+ + + +VF RK Sbjct: 222 ELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDS-ERKTELLCHLINKSAWQQVLVFSRK 280 Query: 258 RERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDV 317 ++ +A + AGI G++ QG R + + +G++ LVATDVAARG+DI ++ Sbjct: 281 KQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVEL 340 Query: 318 SHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 377 V N+++P + Y+HRIGRT RAG G AI+L D LLL +V I++ + + ++ Sbjct: 341 KVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQQWLE 400 Query: 378 ELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 P E T K SK +RA+K+ Sbjct: 401 GFEPDL-TKLEPVTRKNSKAAQRQRAKKR 428 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 241/416 (57%), Gaps = 22/416 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSEL + E + +AL G+ PTAIQ AIP L G+D+LGSA TGTGKTAA+ +P LQ Sbjct: 3 FSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQK 62 Query: 66 LLDFPRKKSGPPR---ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + + K+ PR LILTPTRELA+Q+ ++ + AK+ ++ TI GGV+ E Sbjct: 63 I--YETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+V+AT GRLL + ++ + V L+LDEAD+MLDMGF +D+ I +T ++ Sbjct: 121 LKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I+ ++++L +P ++ P T+ I Q Y + +KT LL+ L Sbjct: 181 QTMLFSATMPKQ-IEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNK-ANKTLLLIDL 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + +VF + + ++L L GI + + G Q R A+ +G+ +L Sbjct: 239 IYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKIL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGIDI + +V NF++P +TY+HRIGRT RAG G A+SLV+ + LL + Sbjct: 299 VATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQ 358 Query: 363 VGRYIEEPIKA---RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 V ++I I+A + + +PK R +V+ + + +K++EKP+ Sbjct: 359 VEKHINSKIEAVGHKYQIQSQPKQR------------EVITDKLKTDTSKKQEKPK 402 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/418 (37%), Positives = 221/418 (52%), Gaps = 9/418 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F + ++D G+ PT IQ IP ALDGRDV+G A TGTGKTAA++LP LQ Sbjct: 2 SFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ PR G R +I+TPTRELA Q+ L K+T L T+ GGV Y + Sbjct: 62 RLMRGPR---GRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLR 118 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +I V GRLL +++ ++ LILDEAD+M DMGF D+ I ++QT Sbjct: 119 RGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQT 178 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ DAI+ A L +P + S H Y A+ L KTALL+ LL+ Sbjct: 179 MLFSATMP-DAIRALAREALREPQTIQIGRSAPVSTVTHAIYPVAEHL--KTALLIELLR 235 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + ++F R + R L++ L G L+G M Q +R A+ GR +LVA Sbjct: 236 HTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVA 295 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGID+ +SHV N+DMP++ + Y HRIGRT RA R G A +LV D ++ + Sbjct: 296 TDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIE 355 Query: 365 RYIEEPIKARVIDELRPKTRAPSE--KQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 R I EP+K + AP+ + P + + E E++ R +RH Sbjct: 356 RLIGEPLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDN-RAPRRH 412 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/414 (38%), Positives = 229/414 (55%), Gaps = 22/414 (5%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M TTF EL L +L L++ + PT IQAA IP L +D++G A TGTGKTAA+ L Sbjct: 1 MVSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFAL 60 Query: 61 PALQHLLDFPRKKSGPP-----RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVA 115 P +Q L ++SG P R LIL+PTRELA Q+ ++ R A+ HL A I GGV Sbjct: 61 PLIQQL----SERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVG 116 Query: 116 YMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA 175 Y + + + DI+VAT GRL+ +++ VETLILDEAD MLDMGFA ++ I Sbjct: 117 YASQFKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIV 176 Query: 176 GETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 + ++ T +FSAT+ D I+ A+ LL+ P V +P + ++ Q+ K Sbjct: 177 SKIPRKRHTQMFSATMP-DNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEK 235 Query: 236 TALLVHLLKQPE-ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 L + LLKQ E R+++F R R LA++L + G+ QG+R ++ Sbjct: 236 RLLTLELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREF 295 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 G+ VLVATD+AARGID+ DV V N+D+P + Y+HRIGRTARAG G AI+L Sbjct: 296 RSGKTPVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSP 355 Query: 355 HD-------HLLLGKV----GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKK 397 + H LLG++ P + R + E R K +P +++ P ++ Sbjct: 356 EEIRKARNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRRE 409 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 154/349 (44%), Positives = 205/349 (58%), Gaps = 3/349 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L L A++ G+ PT IQ +IP L+G+D+LG A TGTGKTAA+ LP LQ Sbjct: 3 FEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQR 62 Query: 66 LLDFPRKKS-GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LLD + +S R LIL PTRELA+QV D RE A+ T + A I GGV + Sbjct: 63 LLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQKLI 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D++VAT GRLL I ++ + +E +LDEADRMLDMGF DI + +Q Sbjct: 123 RGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQN 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L FSAT+ + + A L +PV V P + ++I Q YR D K ALL LL Sbjct: 183 LFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDK-RRKGALLKELLA 241 Query: 245 Q-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + PE + +VF R + ++ L +AGI + G Q +R EA+ ++ VLV Sbjct: 242 EHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVLV 301 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 ATD+AARGID+ DVSHVFN+D+P +T++HRIGRTARAG++G AIS Sbjct: 302 ATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFC 350 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/424 (39%), Positives = 227/424 (53%), Gaps = 14/424 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ +F++L+L + LL A+ + G+T PT IQ AI P L GRD++ +A TGTGKTA + L Sbjct: 1 MSSISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFAL 60 Query: 61 PALQHLL-DFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P LQ L P +G PR L+LTPTRELA QV + L H L I GGV Sbjct: 61 PLLQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKP 120 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 E ++ DI++AT GRL+ K+E D VE L+LDEADRMLDMGF +D+ + Sbjct: 121 QIEALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLL 180 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDP--VEVSANPSTRERKKIHQWYYRADDLEHKT 236 +Q LLFSAT D I+ A+ L DP VEVS ST E H D K Sbjct: 181 PAERQNLLFSATFNDD-IKALADTFLHDPQLVEVSPPNSTTELVTHHVHLV---DRNRKR 236 Query: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 LL HL++ + + +VF R + + LA L + GI + G QG R A+ + Sbjct: 237 ELLTHLVESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKD 296 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G + VLVATD+AARGIDI ++ V N+++P + Y+HRIGRT RAG G A+SLV + Sbjct: 297 GSLRVLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDE 356 Query: 357 HLLLGKVGRYIEEPIKARVID------ELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKE 410 LL + +I PI + P+ P Q G+ + R ++ K K Sbjct: 357 LKLLADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKKP 416 Query: 411 KEKP 414 KP Sbjct: 417 HNKP 420 >UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=A6VVZ5_MARMS Length = 448 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 158/423 (37%), Positives = 227/423 (53%), Gaps = 6/423 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E D +L+++ GF T IQA AIP A+ GRD+L S+ TG+GKT AYLLPAL Sbjct: 3 FEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPALHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + PR++IL PTRELA QV R L + I GG + + + + Sbjct: 63 VYKKKALSKRDPRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSLQK 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR-KQT 184 + +VAT GRL+ ++K+ + +E L+LDEADRMLD+GFA + I R +QT Sbjct: 123 DPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQRQT 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L FSATL+ I + A LL +P V+ E I Q D L+HK ALL HLL Sbjct: 183 LFFSATLDNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDHKEALLKHLLV 242 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 ++IVF + L+ + G++ L G + Q RN+ ++ +G+ +VLV+ Sbjct: 243 GQTIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQFDVLVS 302 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVA+RG+DI VSHVFNFD+P+ + ++HR GRT RAG KG A SLV D + + Sbjct: 303 TDVASRGLDIASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFKAIE 362 Query: 365 RYIEEPIKARVIDELRPKTRA-----PSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 ++++ I+ L K + P+ ++T K S K K ++K K K R Sbjct: 363 VFLQKTFTTESIEGLEAKFKGLLPPKPARQETKKGSTKAPTKASKKTNKKPVGKARFHDN 422 Query: 420 HRD 422 +D Sbjct: 423 QQD 425 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/364 (41%), Positives = 217/364 (59%), Gaps = 3/364 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT TTF L E L AL T PT IQ AIP AL GRD+LG A TGTGKTAA+ L Sbjct: 1 MTSTTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFAL 60 Query: 61 PALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P L HL+ K + + LIL+PTRELA+Q+++ +L++ T + + GGV+ Sbjct: 61 PLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DI+VAT GRLL +++ D R LILDEADRMLDMGF +D+ I G+ Sbjct: 121 IQALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q+++FSAT+ I+D ++++L +P +VS P+ +KI Q + K L Sbjct: 181 DDRQSMMFSATMP-KPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQ-RAKKHWL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + + + + R +VF R + + L + L +AGI + G Q R +A+ +G + Sbjct: 239 IDFVSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATD+ ARGI + D+SHV NFD+P ++Y+HRIGRTARAGR G AI+LV+ + Sbjct: 299 DVLVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAK 358 Query: 360 LGKV 363 L ++ Sbjct: 359 LKQI 362 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 21/434 (4%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL+L ++L+A+ ++G+ PT IQA AIP L G D+LG A TGTGKTAA+ LP LQ Sbjct: 2 TFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQ 61 Query: 65 HLLDFPR----KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L PR + R LI+TPTRELA QV + R K+ L + GGV Sbjct: 62 RLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQI 121 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL + + D V+ L+LDEADRMLDMGF DI+ + Sbjct: 122 DKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPK 181 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ+LLFSAT D I++ A LL DP+ + P ++I Q + K ALL Sbjct: 182 HKQSLLFSATFS-DEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGR-SKKKALLT 239 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 H++ + ++ +VF R + + +A L + GI L G Q R +A++ +G + Sbjct: 240 HIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIR 299 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATD+AARGIDI ++ HV N+++P + Y+HRIGRT RAG G A+SLV + + Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFM 359 Query: 361 GKVGRYIEEPIKARVID--ELRPKTRA---PSEKQT-----GKPSKKVLAKRAEKKKAKE 410 + R+ ++ I+ ++ E P RA +QT GKP + + + A K E Sbjct: 360 QDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSE 419 Query: 411 KEKPRVKKRHRDTK 424 + +R RDTK Sbjct: 420 -----MMQRIRDTK 428 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 267 bits (682), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 216/377 (57%), Gaps = 7/377 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F ++ L L A+ + GFT P+AIQA AIPP L+GRDV+G A TGTGKTAA+ LP L Sbjct: 85 SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 + R+ + L+L PTRELAMQV+D A LD+ + GG Y Sbjct: 145 AIDPSLREV----QALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERAL 200 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +VV T GR++ +++ N + +LDEAD ML MGFA+D+E I + +Q Sbjct: 201 ARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQ 260 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LFSAT+ AIQ A+ ++DPV VS +P + K +HQ Y H+T L +L Sbjct: 261 VALFSATMPA-AIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVP-FRHRTGALARVL 318 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +A +IVFVR R E+ L G+ + G++ Q +R + ++RL +G + VLV Sbjct: 319 ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLV 378 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ + V NFD+P+ ++Y+HRIGRT RAGR G A++ + H+ L + Sbjct: 379 ATDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNI 438 Query: 364 GRYIEEPIKARVIDELR 380 R ++ + VI R Sbjct: 439 ERATKQTLAEAVIPSPR 455 >UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Proteobacteria RepID=A4SWL3_POLSQ Length = 500 Score = 267 bits (682), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 158/389 (40%), Positives = 216/389 (55%), Gaps = 8/389 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T T F L SLL+ + + GFT+ T++QA IP AL G D+L S+ TG+GKTAA+LLP Sbjct: 17 TGTEFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLP 76 Query: 62 ALQHLL-DFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVA 115 + L+ D P P P++L+L PTRELA QV+ A L + + IAT+ GG+ Sbjct: 77 LINQLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMP 136 Query: 116 YMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA 175 Y + + +VVAT GRLL + V+ L++DEADRMLDMGFA D+E I Sbjct: 137 YGKQIQAL-KGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAID 195 Query: 176 GETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 R QTL+FSAT I A L D + + + I Q + AD + HK Sbjct: 196 KRCAGRNQTLMFSATF-APKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHK 254 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL H+L +++VF + ++A+ LR G L G M Q R ++ L Sbjct: 255 HKLLEHILADATLDQAVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLR 314 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 +G +LVATDVAARGID+P +SHV NF +P + Y HRIGRT RAGR G AI+LVE Sbjct: 315 KGHTKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVEHR 374 Query: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTR 384 D + + R+ ++ I A VI L P+ + Sbjct: 375 DRAKIRNIERFTQQDIVASVIAGLEPQAK 403 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 211/369 (57%), Gaps = 4/369 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FSEL L E +L A+ G+T PT IQA AIP L RDVLG A TGTGKTAA+ LP L Sbjct: 65 SFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLT 124 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL+ R ++ PR LIL PTRELA QV ++ K+ L++A + GGV++ + Sbjct: 125 -LLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLL 183 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+++AT GRLL +++ +E L++DEADRMLDMGF DIE I + +QT Sbjct: 184 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 243 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA--DDLEHKTALLVHL 242 L FSAT+ + IQ + L +PV V + I Q + +D E + L + Sbjct: 244 LFFSATMPPE-IQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELI 302 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + IVF ++ V + L++ G N L G+M Q R +A+ + G +L Sbjct: 303 RNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLL 362 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VA+DVAARG+DIP VSHVFN+D+P + Y+HRIGRT RAGR GTAI LV D L Sbjct: 363 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAA 422 Query: 363 VGRYIEEPI 371 + + I I Sbjct: 423 IEKLIGNAI 431 >UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteria RepID=Q2YZZ9_9BACT Length = 453 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 161/362 (44%), Positives = 211/362 (58%), Gaps = 5/362 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L L +LL+AL++ GF RPT IQA AIPPA+ GRDV+ SA TG+GKTAA+LLP L Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQ 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+D PR G R L++TPTRELA Q+ + +LA HT + A + GGV+ F Sbjct: 63 LIDRPR---GTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFRR 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D+++ T GRLL + + +E L+LDEADRMLDMGF DI I R+QTL Sbjct: 120 GVDVLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQTL 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ I A +L +P V+ N I Q Y E K ALLV LLK+ Sbjct: 180 FFSATMPA-PIGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQ-ELKAALLVALLKR 237 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + ++VF R + R + LA L GI + G QG+R EA+ G+ VLVAT Sbjct: 238 DDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVAT 297 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARGID+ ++ HV NFD+P D Y+HR+GRTARA G A + V + L ++ R Sbjct: 298 DIAARGIDVTELGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQEQGDLTRIER 357 Query: 366 YI 367 I Sbjct: 358 VI 359 >UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=A9BNS0_DELAS Length = 707 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/435 (38%), Positives = 229/435 (52%), Gaps = 50/435 (11%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRD-----VLGSAPTGTGKTAAY 58 F EL L E L+ A+ D G+T+PTA+QA AIP A+ D ++ S+ TG+GKTAA+ Sbjct: 88 NAFIELGLAEELVRAVADLGYTQPTAVQAQAIPLAMGSDDQAFIDLMVSSQTGSGKTAAF 147 Query: 59 LLPALQHLLD-------------------------------------FPRK-KSGPPRIL 80 LLP L L+ PR K+ P L Sbjct: 148 LLPVLHTLIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGAL 207 Query: 81 ILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQ 139 IL PTRELA QV+ A EL KH + IA + GG+ Y +N ++VVAT GRLL Sbjct: 208 ILCPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKL-QNANLVVATPGRLLD 266 Query: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDF 199 + V+ L++DEADRMLD+GF+ D+ + T RKQT++FSAT IQ Sbjct: 267 LQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATF-APRIQQL 325 Query: 200 AERLLEDP----VEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255 A R++ D +V+ + + I Q + AD+ +HK LL H L+ ++IVF Sbjct: 326 AMRVMHDGGSGVKKVTIDTPQEKHASIKQVLFWADNSQHKRKLLDHWLRDTTINQAIVFA 385 Query: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 + LAN L++ G + L G + QG RN + L G+V VLVATDVAARGID+P Sbjct: 386 STQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVP 445 Query: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375 ++HVFN+ +P + Y HRIGRT RAGR+G A++ E D + + Y + KA V Sbjct: 446 TITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEV 505 Query: 376 IDELRPKTRAPSEKQ 390 I L P RAPS + Sbjct: 506 IPGLEPAQRAPSSNE 520 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 146/363 (40%), Positives = 211/363 (58%), Gaps = 5/363 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F+E+ L + LL+A++++GF P+ IQ IP L+GRD+LG A TGTGKTAA+ LP LQ Sbjct: 2 NFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + + R LI+TPTRELA+Q+ + K+T L + I GGV Sbjct: 62 SL---SKGEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLK 118 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI++AT GRL I + A+E +LDEAD+MLDMGF DI+ + +QT Sbjct: 119 AGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQT 178 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + I+ A LL +P + +P T I Q Y D L +K +LL L+K Sbjct: 179 LLFSATMPKE-IESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRL-NKISLLTSLIK 236 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + +R +VF + + +A+ L +A + + G Q R A+ EG++ VLVA Sbjct: 237 EHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVA 296 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGIDI ++S+V N+D+P + Y+HRIGRT RAG G AI+L D L ++ Sbjct: 297 TDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIE 356 Query: 365 RYI 367 ++I Sbjct: 357 KHI 359 >UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa group RepID=Q7KK34_DROME Length = 641 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 246/447 (55%), Gaps = 34/447 (7%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F ++ L L+ A+ G+ PT IQA+ IP AL GRD+ G A TGTGKTAAY+LP Sbjct: 156 ITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPT 215 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L+ LL P R+L+L PTREL QV ++L + T +D+ GG+ V Sbjct: 216 LERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAV 275 Query: 123 FSENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +N DIV+AT GRL+ +IK +F ++E LILDEADRMLD FA+ ++ I Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA--DDLEHKTALL 239 +QT+LFSAT+ + ++D A L+ P++V N + + + Q + R D + +L Sbjct: 336 RQTMLFSATM-SEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPIL 394 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L+ + +VFV+ +++ H L L G+ L G + Q +R E++K+ E ++ Sbjct: 395 ASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VL+ATDVAARG+DI V V NF MP + + Y+HR+GRTARAGR G ++SL + + Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKI 514 Query: 360 LGKVGRYIEEPIKARVI------------DELRPKTR------------APSEKQTGKPS 395 + + + E IK R+I L P+ + A +E+Q K Sbjct: 515 VKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTE 574 Query: 396 KKVLAKRAEK------KKAKEKEKPRV 416 +K+L + E+ K+ +E EK R+ Sbjct: 575 RKLLGQTNERRGWFQTKQQREAEKDRL 601 >UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME Length = 782 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 221/377 (58%), Gaps = 4/377 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F ++ L L+ A+ G+ PT IQA+ IP AL GRD+ G A TGTGKTAAY+LP Sbjct: 156 ITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPT 215 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L+ LL P R+L+L PTREL QV ++L + T +D+ GG+ V Sbjct: 216 LERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAV 275 Query: 123 FSENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +N DIV+AT GRL+ +IK +F ++E LILDEADRMLD FA+ ++ I Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA--DDLEHKTALL 239 +QT+LFSAT+ + ++D A L+ P++V N + + + Q + R D + +L Sbjct: 336 RQTMLFSATM-SEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPIL 394 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L+ + +VFV+ +++ H L L G+ L G + Q +R E++K+ E ++ Sbjct: 395 ASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VL+ATDVAARG+DI V V NF MP + + Y+HR+GRTARAGR G ++SL + + Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKI 514 Query: 360 LGKVGRYIEEPIKARVI 376 + + + E IK R+I Sbjct: 515 VKDIIKNAESTIKNRII 531 >UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12 Tax=Gammaproteobacteria RepID=B3PER7_CELJU Length = 477 Score = 265 bits (676), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 156/395 (39%), Positives = 219/395 (55%), Gaps = 13/395 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 T F+ L L LL A++ GF + T +Q AIPPA GRD+L +A TGTGKTAA+ Sbjct: 26 FTSMNFAALGLAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGF 85 Query: 61 PALQHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P LQ LL+ PR + G R L+L PTREL QV+D+ ++ A T L IA + GGV + + Sbjct: 86 PLLQQLLEKPRATQPGHTRALVLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQ 145 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 A D++VAT GRLL++++ N + + VE L+LDEADRMLDMGF +I + Sbjct: 146 ANKLQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMG 205 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 + Q L FSATL ++ A+ +L P+ V+ + + Y D K L Sbjct: 206 KKPQILFFSATLT-QSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPVDQ-ARKYELF 263 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + LL+ + +VF RE +L N L+E + + E QG R A+K EG++ Sbjct: 264 MELLRTHNWFQVMVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKL 323 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVAT+VAARG+DI + +V N D+P + Y+HR+GRT RAG KG AISLV A D Sbjct: 324 QVLVATEVAARGLDIQGLDYVVNLDLPFFIEDYVHRVGRTGRAGSKGIAISLVSASDEPK 383 Query: 360 LGKVGRYIEEPIK----------ARVIDELRPKTR 384 + + + I IK +D +PK+R Sbjct: 384 VALIEKAIGTKIKRVKIKGFEVTESAVDSTKPKSR 418 >UniRef50_C4LEI7 DEAD/DEAH box helicase domain protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LEI7_TOLAT Length = 468 Score = 264 bits (675), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/430 (38%), Positives = 234/430 (54%), Gaps = 7/430 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL + + L EA+ +T T +QA IP AL GRD+ ++ TG+GKT AYLLP + Sbjct: 3 FAELTMHKRLKEAMAHLDYTEMTEVQAQTIPYALIGRDLAVASKTGSGKTLAYLLPLMHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LL + PR LIL PTRELA QV R L T + + + GG + + + + Sbjct: 63 LLTSRALSTRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKALRK 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE--HIAGETRWRKQ 183 +I+VAT GRLL ++ +F VE L+LDEADRMLD+GFA ++ H A R R Q Sbjct: 123 TPEILVATPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLR-Q 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSATL +++ + +L+ P +S I++ ++ D L+HK ALL HLL Sbjct: 182 TWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALLKHLL 241 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 QP+ ++IVF+ RE LA E I L G+M Q +RN+ I + + G VL Sbjct: 242 SQPDYQQAIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVLF 301 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 TDVAARG+D+ VS V NFDMP+ + Y+HRIGRT RAG +G A+SL+ D + + Sbjct: 302 TTDVAARGLDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLISPKDWVSFQGL 361 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + VI L + + ++ K S K AE K A + + + +++T Sbjct: 362 MALQRREVTFTVIPGLEGRFKGVLAQKNTKFSGKGAHPLAEAKAAAQGK----RSFNKNT 417 Query: 424 KNIGKRRKPS 433 G RK S Sbjct: 418 ATKGPVRKES 427 >UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMZ1_9GAMM Length = 417 Score = 264 bits (675), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 153/404 (37%), Positives = 230/404 (56%), Gaps = 17/404 (4%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L L + L G+ PTAIQ AIP L G D++ +A TG+GKTA ++LP L+ Sbjct: 2 SFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLE 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDI--ATITGGVAYMNHAEV 122 L P + L+L PTRELA+QVS +++ I I GG A + Sbjct: 62 KLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQS 121 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 S+ DIVVAT GRLL +++ D R ++ L+LDEADRMLD+GFA +++ I +T Sbjct: 122 LSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNV 181 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT D +++ E LL +PVE+S ++HQ D ++T LL HL Sbjct: 182 QTLLFSATFP-DKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDR-NNRTMLLKHL 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +KQ + + ++FV + + + L +GI + L G++ Q +R A++ ++GR +L Sbjct: 240 IKQEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKIL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV--EAHDHLLL 360 +ATD+AARGIDIP + V N+D+PR+ Y+HR GRTARAG G AIS V E+ H Sbjct: 300 IATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHF-- 357 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + IE+ I+ ++ P+ + P ++ +P K+V K+ + Sbjct: 358 ----KLIEKRIRMKI-----PREQIPGFERAQEPPKEVTQKKGQ 392 >UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY2_METPP Length = 516 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/408 (38%), Positives = 224/408 (54%), Gaps = 25/408 (6%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T + F L L LL A+ GFT PT++Q AIP AL G D + S+ TG+GKTAA+LL Sbjct: 71 VTASNFESLGLAAPLLHAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLL 130 Query: 61 PALQHLLDF---PRKKSGPPRILILTPTRELAMQVSDHARELAKHTH------------- 104 P L LL+ + + PR ++L PTRELA QVS A +L + Sbjct: 131 PVLHRLLNAGAAEQTRVATPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLR 190 Query: 105 -----LDIATITGGVAYMNHAEVFS-ENQDIVVATTGRLLQYIKEENFDCRAVETLILDE 158 L IAT+ GG+ + ++F +VVAT GRLL A + L++DE Sbjct: 191 DAARGLRIATVVGGMPFGK--QLFDLRGAQLVVATPGRLLDLHSRGQIRLDATQVLVVDE 248 Query: 159 ADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE 218 ADRMLD+GFA+D+ IA T R QT++FSAT I A +L+ P + + Sbjct: 249 ADRMLDLGFAEDLAAIADATAQRDQTMMFSATF-APRIMALASKLMRSPGRLELATAHDV 307 Query: 219 RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYL 278 I Q + AD++ HK ALL H L+ E +++VF + +A L++ G + L Sbjct: 308 HSDITQTLHWADNMGHKQALLEHWLRDAEVDQAVVFASTQVDTEAIAEALQQQGHSAVAL 367 Query: 279 EGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGR 338 G M Q RN ++ + +G V VLVATDVAARG+D+P +SHV NF +P + Y+HRIGR Sbjct: 368 HGAMPQAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGR 427 Query: 339 TARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAP 386 T RAGR GTAI++ E + + + + +PI+A VI L P + P Sbjct: 428 TGRAGRSGTAITIAEHRERGKIRAIEAFTRQPIEASVIVGLEPTPQRP 475 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 152/350 (43%), Positives = 207/350 (59%), Gaps = 7/350 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF +L L + +L +++D GFT P+ IQAAAIP L GRD++G A TGTGKTAA+ LPA Sbjct: 13 LITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPA 72 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L ++ P G IL++TPTRELA QVSD + ++ T+ GG +Y ++ Sbjct: 73 LNNI--NPNDGVG---ILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDL 127 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VVAT GRLL +K+ A ++LDEAD MLDMGF DI I + Sbjct: 128 IQRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNR 187 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ I+ AER+L++P +S I+Q YY ++ E A+ + L Sbjct: 188 QTLLFSATMP-KPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAI-IRL 245 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + +SIVF R + V L+N L AG L G+M Q +R IK V VL Sbjct: 246 MDAEACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVL 305 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 VATDVAARGI + ++SHVFN+ +P ++Y+HRIGRT RAG KG AI+L+ Sbjct: 306 VATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLL 355 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/382 (39%), Positives = 215/382 (56%), Gaps = 6/382 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F EL+L ++L+A+ + G+ PT IQA AIP L+G D+LG A TGTGKTAA+ LP L Sbjct: 2 NFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLH 61 Query: 65 HL---LDFPRKKSGPP-RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L K G R L+LTPTRELA QV + R K+ LD I GGV Sbjct: 62 KLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQI 121 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL ++ D V+ LILDEADRMLDMGF D++ I Sbjct: 122 SKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPK 181 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ+LLFSAT D I+D A LL++P + P ++I Q + + K ALL Sbjct: 182 EKQSLLFSATFS-DEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGK-KKALLA 239 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 H++ + + ++ +VF R + + +A +L + GI L G Q R +A+ G + Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATD+AARGIDI ++ HV N+++P + Y+HRIGRT RAG G A+S V + + Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFM 359 Query: 361 GKVGRYIEEPIKARVIDELRPK 382 ++ R+ ++ I + ++ P+ Sbjct: 360 QEIERFTKQTIPVQFVEGFGPE 381 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 208/367 (56%), Gaps = 2/367 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+T F L + + ++ L G PT IQ +IP L+GRD++G A TGTGKTAA+ LP Sbjct: 21 TLTNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLP 80 Query: 62 ALQHLL-DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++ LL D R + R LIL PTREL Q+++ ++ + + L I + GGV+ Sbjct: 81 LIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQ 140 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL I AV L+LDEAD+MLD+GF D+ IA Sbjct: 141 LQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 200 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QT+LFSAT+ AI D A L DPV+V P + K+ Q+ + KT LL Sbjct: 201 KRQTMLFSATMP-KAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + R++VF+R + +L L G + + G QG+R A+K +G + Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATDVAARGIDIP VSHV+N+D+P D Y+HRIGRTARAGR G AI+ + LL Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379 Query: 361 GKVGRYI 367 + R + Sbjct: 380 RDIERLM 386 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 211/366 (57%), Gaps = 4/366 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F++L +++ L+E L + PT +Q +IP L+G+++L +A TGTGKTAA+ LP + Sbjct: 3 VNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q + +K +G P+ L+L PTRELA QV D+ + + T L I + GG + Sbjct: 63 QTVQQ--KKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E DI++AT GRLL ++ N + L+LDEADRMLDMGF D++ I KQ Sbjct: 121 EEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT E I+ A +L+E PVEV +P+ + + Q Y D + K LL +L+ Sbjct: 181 ILLFSATFE-KRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDK-KRKRELLAYLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +VF + ++ ELA L+ GI + G+ QG R A+ +G+V L+ Sbjct: 239 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI ++ V NFDMP + Y+HRIGRT RAG+ G A+SL+ + LL + Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 358 Query: 364 GRYIEE 369 +++ Sbjct: 359 ENLLDQ 364 >UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12UP5_METBU Length = 522 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 148/348 (42%), Positives = 209/348 (60%), Gaps = 9/348 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F +L +++++L +++DK F PT IQ AIP L+G+D++G A TG+GKT A+ +Q Sbjct: 3 SFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQ 62 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + +K R L+LTPTRELA QV + +E ++H L +A I GGVA +N Sbjct: 63 KI-----EKGNGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVA-INPQIRQL 116 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E D+VVAT GRLL +I+ D VE L+LDEADRMLDMGF D+E I E +QT Sbjct: 117 ERADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQT 176 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 ++FSAT+ D IQ + + + +P +V A + K+ Q Y + K +LLVHLLK Sbjct: 177 MMFSATVSKD-IQYLSSKYMNNPSKVFAKAYV-DSDKLKQVYIDVPK-KMKFSLLVHLLK 233 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 ++ +VF R V + LR+ I+ + G Q KR + + + LV Sbjct: 234 SEKSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALVC 293 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 TDVAARG+DIP VSHV+NFD+P Y+HRIGRTARAGR+G I++V Sbjct: 294 TDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVV 341 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 148/361 (40%), Positives = 203/361 (56%), Gaps = 6/361 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++ L L+ L GF++PT IQ AIP L G D++G A TGTGKTAA+ LP L + Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + DF +K + L+L PTRELA QV D + ++ + GG +Y Sbjct: 117 I-DFSKK---CVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRR 172 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +VV T GRLL I++ + ++TL+LDEAD ML MGF DIE I +T +QT+ Sbjct: 173 GARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTM 232 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL + A R L P +S +P I Q YY ++ K A + + + Sbjct: 233 LFSATLS-SRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINN-SDKIAAITRVFEV 290 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +++F R R V ELAN L G L G++ Q R + R +G++ VLVAT Sbjct: 291 ETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVAT 350 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DI D+SHVFN+D+P + Y+HRIGRT RAGR GTAISLV D + ++ + Sbjct: 351 DVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQ 410 Query: 366 Y 366 Y Sbjct: 411 Y 411 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 261 bits (667), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 155/390 (39%), Positives = 221/390 (56%), Gaps = 7/390 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F EL+LDE ++ A+ + GF + IQA AIP A++GRD++G A TGTGKTAA+ + Sbjct: 1 METVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 P LQ + P+ K + +IL PTRELA+QV++ R LAK H + I GG + Sbjct: 61 PLLQKV--DPKVKK--LQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + IVV T GR++ +++ + V T++LDEAD ML+MGF +D+E I + Sbjct: 117 IRSLKDGTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTL+FSAT+ AI D A + +DPV V K+ Q+YY ++K ++ Sbjct: 177 EERQTLMFSATMP-QAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKP-KNKVEVM 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL SIVF + +V EL L+ G L G++ Q +R+ + GR Sbjct: 235 CRLLDMYAPKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRT 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++LVATDVAARGID+ DV VFN+D+P+ + Y+HRIGRT RAGR+G A SLV + Sbjct: 295 DILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYK 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEK 389 L + RY + I + I L T EK Sbjct: 355 LRDIQRYCKTKIIPQAIPSLNDITEIKVEK 384 >UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1N6E2_9GAMM Length = 475 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 218/367 (59%), Gaps = 7/367 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + LD ++ ++QD GF+ + IQA A+P L GRD++G A TGTGKTAA+L+ LQ Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159 Query: 66 LLDF-PRKK-SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 LL P ++ + PR LIL PTRELAMQ++ A L+K+ L+I T+ GGV Y E Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQL 219 Query: 124 -SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--RW 180 +E D+VVAT GRLL Y+++ VE L++DEADRMLDMGF D++ I T + Sbjct: 220 ENEVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKS 279 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT LFSAT D + +E P +V P + + + Q + + + AL+ Sbjct: 280 IRQTQLFSATYPYDVVA-LSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALIE 338 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L K+ +SI+F +R+ +LA+ L + G+ L GE+ Q KR + + R Sbjct: 339 YLEKE-NTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDGA 397 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVA RGI + ++HVFN+++P + Y+HRIGRT RAG GTAI+ ++ ++ L Sbjct: 398 VLVATDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFIDEYEAYGL 457 Query: 361 GKVGRYI 367 + Y+ Sbjct: 458 MDLESYL 464 >UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales RepID=A2U4F0_9FLAO Length = 411 Score = 260 bits (665), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 220/370 (59%), Gaps = 4/370 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS++ L++S+ +A+ + F +PT +Q IP LD ++V+ +A TGTGKTAA+ LP + Sbjct: 3 FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62 Query: 66 LLDFPRKKSGPPRI--LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L D + G +I L++TPTRELA+Q+ ++ + +K+++L + GGV+ E+ Sbjct: 63 LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEPQKEIL 122 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++ DI+VAT GRL+ + N D +E +LDEAD MLDMGF DI+ I +KQ Sbjct: 123 AKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKKQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + I + ++ ++++ +V NP K I Q Y ++KT L +HLL Sbjct: 183 TLLFSATIP-EKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPK-KNKTDLCLHLL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + I+F R + V +L L + G N + G+ QG RN+AI+ + ++L+ Sbjct: 241 RNTINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILI 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI +V + NFD+P + Y+HRIGRT RAG+ G A S ++ + + Sbjct: 301 ATDVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIAFSFCSPDENNYIASI 360 Query: 364 GRYIEEPIKA 373 IE+ IK Sbjct: 361 ENLIEKSIKV 370 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 260 bits (664), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 149/373 (39%), Positives = 217/373 (58%), Gaps = 9/373 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+ L L ES+++A+ D GFT+P+ IQ +IP L G D++G A TGTGKTAAY L Sbjct: 1 MNDNQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P + + D KS LIL PTRELA+QV++ + L+K+ + + GG + Sbjct: 61 PIITKMSDNRGIKS-----LILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQI 115 Query: 121 EVFSE-NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DIVV T GR+L +K + ++E L+LDEAD ML+MGF DI+ I T Sbjct: 116 RALRKGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +QTLLFSAT+ D I A++ ++ D VS S+ KI Q Y+ ++ +H+ Sbjct: 176 SERQTLLFSATMP-DPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINN-KHRLEA 233 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L LL + +I+F R + V EL L+ G + G+M Q R + + EG Sbjct: 234 LCRLLDLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGT 293 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +N+L+ATDVAARGID+ V+HVFN+D+P+ ++Y+HRIGRT RA + GTA SLV D Sbjct: 294 LNLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFS 353 Query: 359 LLGKVGRYIEEPI 371 +L ++ + I Sbjct: 354 MLKQIQNVTKSSI 366 >UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW1_9BURK Length = 617 Score = 260 bits (664), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 213/394 (54%), Gaps = 6/394 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F ++ L LL+AL T PT +Q +P DG D++ S+ TG+GKT +LLP + Sbjct: 2 SFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVMH 61 Query: 65 HLL---DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 ++ P + P L+L PTRELA QVS A L K T + +AT+ GG+ Y Sbjct: 62 RMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKGVRVATVVGGMPYGKQM 121 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVV T GRLL ++ + V TLI+DEADRMLD+GF++D+E I Sbjct: 122 ASL-RGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEADRMLDLGFSEDLEAIDQLCGN 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 R QTL+FSAT I AE ++ +P + I Q AD+ HK LL Sbjct: 181 RIQTLMFSATF-AKRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKLLN 239 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 H L+ P+ +++VF + LA L + G+ C L G M Q RN + + +G + Sbjct: 240 HWLEHPDMVQAVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRKGDIK 299 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+P +SHV N+ MP + Y+HRIGRT RAGR G A++L EA D + + Sbjct: 300 VLVATDVAARGLDVPAISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACDIISV 359 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKP 394 + R+I I ++ L P+ + GKP Sbjct: 360 RGIERFINSRIPEEQVEGLEPRGNFTQAPRGGKP 393 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 225/409 (55%), Gaps = 10/409 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+E L + LL++L + +P+ IQ IP L+G D++ A TGTGKTA + LP L Sbjct: 2 TFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILN 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L ++K+ R LILTPTRELA Q+ ++ + ++ HL + GG + Sbjct: 62 SL---SKEKNHSIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAIR 118 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI++AT GRLL Y+ R +E L+LDEADRMLDMGF D+ I + + T Sbjct: 119 SGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRIT 178 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ + IQ+ A +L++P EV I Q+ + K +LV+LL Sbjct: 179 ALFSATMPKE-IQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEK-SSKKKVLVNLLN 236 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 ++IVF R + L +L+E I + G+ QG+R A++R ++ +L+A Sbjct: 237 TESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIA 296 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGIDI D+SHV NFD+P + Y+HRIGRT RA ++G +ISLV + LL + Sbjct: 297 TDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIE 356 Query: 365 RYIEE--PIKARVID---ELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 YI+ P+K + E + K ++ K T K + K+ KKK+ Sbjct: 357 SYIQFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKERFSNQKKRSKKKS 405 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 208/367 (56%), Gaps = 12/367 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSEL L + +L+AL ++G+T PT IQ AIP L RD+LG A TGTGKTAA+ +P LQ Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62 Query: 66 LLDFPRKKSGPPR---ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + K +G PR LILTPTRELA+Q+++ +H ++ I GGV+ + Sbjct: 63 LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNT 122 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRLL + + R V+ +LDEADRMLDMGF D++ + + + Sbjct: 123 LKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTHR 182 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q+L FSAT+ D + A+ +L +P +V P + I Q Y E K LLVH+ Sbjct: 183 QSLFFSATMPPD-VAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGK-EDKRKLLVHI 240 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++VF R + ++ L +AGI + G Q R A+ VL Sbjct: 241 LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL 300 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD------ 356 VATD+AARGID+ ++SHV N+++P +TY+HRIGRT RAG G A+S +A + Sbjct: 301 VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRD 360 Query: 357 -HLLLGK 362 H L+GK Sbjct: 361 IHKLIGK 367 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 211/368 (57%), Gaps = 3/368 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT+F DE LL+A++ +T+PT IQA A+P AL GRD++G A TG+GKTAA++ P Sbjct: 264 VTSFGHFGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPL 323 Query: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL+D + G P LIL PTREL++Q+ + A++ K +L++ GG + ++ Sbjct: 324 LMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 383 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + +IVVAT GR++ +K + + + V L+LDEADRM MGF + I R Sbjct: 384 ALEQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPD 443 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY-RADDLEHKTALLV 240 +QTLLFSAT + I+ A +L DPV + + I Q + + L+ LL Sbjct: 444 RQTLLFSATFK-KRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLC 502 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+K ++FV K+ +AN L N L G+M Q RN+ I + + + Sbjct: 503 HLVKFLSEGSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECD 562 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+DIP + +V N+D+ R DT+ HRIGRT RAG KG A +LV D Sbjct: 563 ILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFA 622 Query: 361 GKVGRYIE 368 G + R +E Sbjct: 623 GHLVRNLE 630 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 149/355 (41%), Positives = 203/355 (57%), Gaps = 3/355 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++LEL E +L A+ D G+T PT IQ AIP L RDV+G A TGTGKTA++ LP L+ Sbjct: 156 TFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLE 215 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L D R ++ PR LIL PTRELA+QV+++ K+ L+ A + GG + + EV + Sbjct: 216 ILSDS-RARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLN 274 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+++AT GRLL + L++DEADRMLDMGF DIE I G +QT Sbjct: 275 RGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQT 334 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ I+ A+ L P E++ + I D+ K L LLK Sbjct: 335 LLFSATM-APTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEY-SKRETLRQLLK 392 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 P +IVF ++ V L L + G + L G++ Q R +++ + VLV Sbjct: 393 DPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVC 452 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +DVAARGIDI +SHVFNFD+P + Y+HRIGRT RAGR+G A S+ +D L Sbjct: 453 SDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKAL 507 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/438 (37%), Positives = 234/438 (53%), Gaps = 22/438 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L A+ + G+ T +Q AIP G DVL SA TGTGKTAA+ LP LQ Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62 Query: 66 LLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + + P + R LILTPTRELA QV+D+ +KH ++ + TI GG+ A+ Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLK 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI+VAT GRLL++I N VE L+LDEADRMLDMGF+ DI+ I ++Q Sbjct: 123 QGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQN 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT A++ A +L+ P +SA+ + Q Y + K LL L+ Sbjct: 183 LLFSATF-STAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQ-RRKRELLSELIG 240 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF R +L L GI + + GE QG R A++ EG+V VLVA Sbjct: 241 TKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVA 300 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 T+VAARG+DI + +V N+D+P + Y+HRIGRT RAG+ G AIS V + L + Sbjct: 301 TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE 360 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR---VKKRHR 421 + I + I+ + P + + S+++L K EK+++ K++ R V + Sbjct: 361 KLIGQKIR---------RITVPGYEVS---SRELLLKTIEKRRSFGKKQERNDNVGAQVV 408 Query: 422 DTKNIGKRR----KPSGT 435 KN+ RR KP+ T Sbjct: 409 GEKNMQGRRVKVGKPTST 426 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/399 (38%), Positives = 232/399 (58%), Gaps = 19/399 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF++L+L+ + +A+ + G+ PT IQA AIPPAL GRDVLG A TGTGKTA++ LP Sbjct: 10 MTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPM 69 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + +L R ++ PR L+L PTRELA QV+++ AKH L A + GGV++ + Sbjct: 70 IT-MLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQA 128 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + D+++AT GRLL + + V+ +++DEADRMLDMGF DIE I G + + Sbjct: 129 IDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTR 188 Query: 183 QTLLFSATLEGDAIQDFAERLLEDP--VEV---SANPSTRERKKIHQWYYRADDLE--HK 235 QTL FSAT+ + I+ L +P +EV S +T E++ I R D + Sbjct: 189 QTLFFSATMAPE-IERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKR 247 Query: 236 TALLVHLLKQPEATR-SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 L + + +A R +I+F ++ V +A L++ +N + G++ Q R + Sbjct: 248 DMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGF 307 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 +G + +LVA+DVAARG+DIP+VSHV N+D+P + Y+HRIGRT RAG+ G AI+L Sbjct: 308 RDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVP 367 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 D LG + I++PI P+ AP + T K Sbjct: 368 SDEKYLGAIEGLIKQPI---------PRAEAPMDAGTPK 397 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 212/356 (59%), Gaps = 7/356 (1%) Query: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 A++ GF P+ IQAA IP GRDV+G A TGTGKTAA+ LP L L D +KK P Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRL-DRSQKK---P 223 Query: 78 RILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATTGR 136 + L+L+PTRELA+QV+D +E A H + + I GG +Y IVV T GR Sbjct: 224 QALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGR 283 Query: 137 LLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAI 196 ++ +++ + D ++ L+LDEAD ML+MGF +D+E I +T KQT LFSAT+ +I Sbjct: 284 VIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPA-SI 342 Query: 197 QDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVR 256 + +++ LEDP EV+ R IHQ Y + +K L +L+ E I+F R Sbjct: 343 RRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNH-HYKLDALTRILEVTEFDAMIMFAR 401 Query: 257 KRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPD 316 ++ ELA LR G + + G+M Q +R + +L +GR+++LVATDVAARG+D+ Sbjct: 402 TKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVER 461 Query: 317 VSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 372 +SHV N+D+P ++Y+HRIGRT RAGR G AI V + LL + R + I+ Sbjct: 462 ISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIE 517 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 221/384 (57%), Gaps = 14/384 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF L L ++L+A+++ G+ P+ IQA IP L+ +DVLG A TGTGKTAA+ LP L Sbjct: 5 VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 ++ P K P+IL+LTPTRELA+QV++ + AKH +++ + GG +Y Sbjct: 65 NNI--DPSVKQ--PQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++VAT GRL+ +I A++ L+LDEAD ML MGF D+E I +T K Sbjct: 121 LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ IQ+ + + + +P +V + + Q ++ A HK +V Sbjct: 181 QTCLFSATMPKQ-IQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASI--HKNKAIVRF 237 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + +IVFVR R +LA L G + L G+M Q R ++RL G +NV+ Sbjct: 238 LEAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVV 297 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+D+ +S V N+D+P+ + Y+HRIGRT RAGR G AI V+ ++ LL Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKN 357 Query: 363 VGRYIEEPIK------ARVIDELR 380 + R+ I A++++E R Sbjct: 358 IIRHTNSDIAQVELPTAKIVEEKR 381 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 224/379 (59%), Gaps = 9/379 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++++F L+ +L+A+ D GF P+ IQAA IP L+GRDV+G A TGTGKTAA+ +P Sbjct: 15 SMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++ + PR ++ ++LTPTRELA+QV+ R++AK+ + I GG + ++ Sbjct: 75 LVERVSTEPRVQA-----IVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIR 129 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + IV+ T GR+L +I V ++LDEAD MLDMGF DIE I ET Sbjct: 130 ALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSD 189 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE-HKTALLV 240 +QT+LFSAT + ++ A R + DP ++ N +I Q Y+ LE +K L Sbjct: 190 RQTMLFSATFPNE-VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKV--LERNKLDSLC 246 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + I+F R + V +L L G L G++ Q +R+ +++ + + Sbjct: 247 RIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIE 306 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ DV+HV N+D+P+ ++Y+HRIGRT RAG++G AI+LV ++ LL Sbjct: 307 LLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLL 366 Query: 361 GKVGRYIEEPIKARVIDEL 379 ++ R I++ I R + L Sbjct: 367 KQIEREIKQKITVREVPSL 385 >UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4EAF2_9ACTN Length = 749 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 205/371 (55%), Gaps = 22/371 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L + +L A+++ G+T PT +QA +IP L+GRD+L +A TGTGKTAA+LLP + + Sbjct: 48 FDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNN 107 Query: 66 LLDF--------------------PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL 105 L P P +L++TPTRELA Q+ + A ++A T Sbjct: 108 LEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGH 167 Query: 106 DIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDM 165 T+ GGV+Y DI+VAT GRL+ I++ V+ L+LDEADRMLDM Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDM 227 Query: 166 GFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 GF + I ET +QTLLFSATL+ +A+ + + L+ DP V P+T + Q+ Sbjct: 228 GFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITD-LVSDPARVEIAPATSTADTVDQF 286 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 + +E K LL LK+ R+IVF+R + R L GI + G Q Sbjct: 287 VFPVS-IEAKNNLLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQA 345 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 +R A+ +G V+VLVATDV ARGIDI DV +V NFD+P Y+HRIGRT RAG Sbjct: 346 QRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGEL 405 Query: 346 GTAISLVEAHD 356 G AI+ V D Sbjct: 406 GWAITFVTEQD 416 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 145/374 (38%), Positives = 219/374 (58%), Gaps = 9/374 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F +L L ESLL+A++D GF P+ IQA +IP AL+G D++G A TGTGKTAA+ Sbjct: 1 MNNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGC 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + + DF KK P + LIL PTRELA+QV++ L KH L + I GG Sbjct: 61 AIINNA-DFSGKKKSP-KALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQI 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 DIVV T GR+L I+ ++ + L+LDEAD ML+MGF D+E I + Sbjct: 119 RALKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKT 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLL-EDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL- 238 +QTLLFSAT+ I+ A + ED ++ S+ KI Q+Y+ +++H+ Sbjct: 179 DRQTLLFSATMPP-QIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYF---EIKHRDRFE 234 Query: 239 -LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L +L E +I+F + ++ V E+ ++ G + G+M Q R + +++ EG Sbjct: 235 TLCRVLDFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEG 294 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 ++ LVATDVAARGID+ V+HV N+D+P+ ++Y+HRIGRT RA R+G A SLV ++ Sbjct: 295 SLDFLVATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEY 354 Query: 358 LLLGKVGRYIEEPI 371 ++L ++ ++ + I Sbjct: 355 MMLKQIQKHTKSKI 368 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 216/366 (59%), Gaps = 12/366 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FS L L ++LL+++ D GF +P+ IQA AIP A+ G D++G A TGTGKTAA+ Sbjct: 1 MNEIKFSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGC 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + H+ KKSG I IL PTRELA+QV+D + L+K+ L I + GG N Sbjct: 61 GIINHI----SKKSGLSAI-ILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N +IVV T GR+L +IK ++ L+LDEAD ML+MGF D+E I + Sbjct: 116 RALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPS 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTAL- 238 +QTLLFSAT+ D I+ A+R ++ D +S ++ I Q ++ ++ HKT Sbjct: 176 ERQTLLFSATMP-DQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFF---EVSHKTRFE 231 Query: 239 -LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L +L + +I+F R ++ V EL ++ G + G+M Q R +K+ EG Sbjct: 232 ALCRVLDFDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEG 291 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 +N LVATDVAARGID+ ++HV N+D+P+ ++Y+HRIGRT RA R+G A SLV ++ Sbjct: 292 SLNYLVATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEY 351 Query: 358 LLLGKV 363 +L ++ Sbjct: 352 SMLKQI 357 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/350 (41%), Positives = 204/350 (58%), Gaps = 6/350 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF EL L +SLL++++ GF T IQA IP AL G+D++G A TGTGKTAA+ LP Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + G +++ PTRELA+QV + ++ KH + I I GG Sbjct: 61 LDKVDTHKESVQG----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++ I+V T GR+L +I + + VET++LDEAD ML+MGF +DIE I + Sbjct: 117 LKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ D I+ AER + +P + I Q+Y + + K +L L Sbjct: 177 QTLLFSATMP-DPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +IVF R + RV EL+ L G + G++ Q KR +++ EG + VL Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 VATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+KG A+ V Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFV 344 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 203/369 (55%), Gaps = 4/369 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF L L +L AL D G PT IQ +IP +DGRD+LG A TGTGKT +LLP L Sbjct: 2 TFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL- 60 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 H + R+ R L+L+PTRELA Q+ A++ AK+ H + + GGV ++ Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 N DIVVAT GRLL +++ N +I+DEADRMLDMGF DI I + +Q+ Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT IQ+ A D V V P + IHQ + K LL +L Sbjct: 181 LLFSATCP-PRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLD 239 Query: 245 Q--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + E + I+F R + +L+ L +AG + L G+ Q RN + R G + VL Sbjct: 240 EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI ++HV N+D+P++ + Y+HRIGRT RAGR G A+S D ++ Sbjct: 300 VATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRS 359 Query: 363 VGRYIEEPI 371 + +PI Sbjct: 360 IETMAGKPI 368 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 152/388 (39%), Positives = 219/388 (56%), Gaps = 3/388 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L LL+A++D G+T PTAIQA AIP L +D++G A TGTGKTA+++LP + Sbjct: 37 TFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMID 96 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 ++ R+++ PR LIL PTRELA QV+++ + + L +A + GGV + + Sbjct: 97 -VMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTLD 155 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E D+++AT GRL+ + E L++DEADRMLDMGF DIE I + +QT Sbjct: 156 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQT 215 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I+ A++ L +P + + K I + K L LL Sbjct: 216 MLFSATMPA-PIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVK-ARQKRDTLEWLLA 273 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +I+F ++ V EL L+ G + + G+M Q R + + R G VN+LVA Sbjct: 274 NDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVA 333 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 +DVAARG+DI VSHVFNFD P D Y+HRIGRT RAG KG A +LV D + V Sbjct: 334 SDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANVE 393 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTG 392 + IK +++R + S K TG Sbjct: 394 KLTGAKIKVFGKEDVRVELADGSAKNTG 421 >UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphingobacteriales RepID=Q11WD3_CYTH3 Length = 463 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 208/365 (56%), Gaps = 6/365 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F EL+L+ LL A+++ G+T PT IQ+ AIP L G D++G A TGTGKTAAY LP L Sbjct: 6 NFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPIL- 64 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + + PR +I PTREL MQ+ ++LAK+T L I + GG+ E Sbjct: 65 --MKIKYAQGHNPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQ 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI+VAT GR L EE + V+T++LDEAD+M+DMGF + + ++Q Sbjct: 123 KGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQN 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + ++ E LE P+++ P I Q Y+ + + K LL +L++ Sbjct: 183 LLFSATM-SERVERLTEEFLEYPMKIEVTPQATPATLISQKLYKVPNFKTKIHLLEYLIR 241 Query: 245 QPEA-TRSIVFVRKRERVHELANWLREAGINNC-YLEGEMVQGKRNEAIKRLTEGRVNVL 302 + E+ TR+I+FVR ++ ++ ++ N C + Q R A+ +G + +L Sbjct: 242 KDESVTRAIIFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKIL 301 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ +VSHV NFD+P D Y+HRIGRT RA G AI+ + + K Sbjct: 302 VATDVAARGIDVHEVSHVINFDVPIIYDDYIHRIGRTGRANHTGVAITFATEAEMYHIEK 361 Query: 363 VGRYI 367 + + I Sbjct: 362 IEKII 366 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 211/369 (57%), Gaps = 4/369 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L L +L A+ ++G+ PT IQ AIP L+GRD++ SA TGTGKTA + LP LQ Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61 Query: 65 HLLDFPRKKSG--PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 HL+ G P R LILTPTRELA Q+ ++ R+ +K+ ++ + GGV+ Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D++VAT GRLL + VE L+LDEADRMLDMGF DI + + ++ Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKR 181 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT D I+ AE+LL +P+E+ ++ Q + D + K LL H+ Sbjct: 182 QNLLFSATFSDD-IKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDK-KRKRELLSHM 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + + + +VF R + + LA L + GI + + G QG R A+ G + VL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARG+DI ++ HV N+++P + Y+HRIGRT RA G A+SLV +H LL Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 363 VGRYIEEPI 371 + + +++ I Sbjct: 360 IEKLLKKEI 368 >UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Leptospira RepID=Q04Q15_LEPBJ Length = 549 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 222/377 (58%), Gaps = 11/377 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L LL A+Q+ G+T T IQ +IP L+G+D++G A TGTGKT A+L+P + Sbjct: 3 FEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVVHT 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 +L +K L+L PTREL +Q++D A++L KH+ + I GG Y + + Sbjct: 63 ILTKNIQKVSA---LVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKDLE 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 I+VAT GRL+ +K + D VE +LDEADRMLDMGF QDI + + + RKQT Sbjct: 120 GLNGIIVATPGRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQT 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY---RADDLEHKTALLVH 241 LLFSATL + ++ A R L +PVE+ NP ++I Q R + + + T L+V+ Sbjct: 180 LLFSATLSVEVMR-LAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIVN 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + + I+F + + ++ LR+ GI + E+ Q KR ++ G+ Sbjct: 239 ---SKDEGQGIIFTNYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRY 295 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 +VATDVA+RGID+ ++ V+N+D+P+ + Y+HRIGRTARAGR G AI D++ L Sbjct: 296 MVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAIGFCSESDYVELE 355 Query: 362 KVGRYIEEPIKARVIDE 378 K+ +Y+++ I+ ++E Sbjct: 356 KIEKYLKQKIEILEVNE 372 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 212/372 (56%), Gaps = 7/372 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++T+FS L L E ++ AL + PT IQA AIP L GRD++G A TGTGKTAA+ LP Sbjct: 35 SLTSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALP 94 Query: 62 ALQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L L+ P R + R L+L+PTREL+ Q+ ++ + +H ++ ++ GGV Sbjct: 95 ILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQI 154 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S D++VAT GRL+ ++ VE L+LDEAD+MLDMGF I I Sbjct: 155 RALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPH 214 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++ +L FSAT+ AI + A +L DPV V+ P + ++ Q D +K LL Sbjct: 215 KRHSLFFSATMP-HAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDK-ANKGQLLA 272 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L + R++VF R + ++ L +AGI + G Q +R+ + EG++ Sbjct: 273 EVLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIR 332 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATD+AARGID+ VSHV NFD+P ++Y+HRIGRTARAGR+G AIS + + L Sbjct: 333 TLIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFL 392 Query: 361 GKVGRYIEEPIK 372 R IE+ IK Sbjct: 393 ----RSIEKLIK 400 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 161/418 (38%), Positives = 230/418 (55%), Gaps = 17/418 (4%) Query: 27 PTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ--HLLDFPRKKSGPPRILILTP 84 P+ IQ AIP + GRD+ G A TGTGKTAA+ LP LQ +L D K + LIL P Sbjct: 6 PSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKALILAP 65 Query: 85 TRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEE 144 TRELA+Q+++ + +L A I GGV + + D+++AT GRL+ + Sbjct: 66 TRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLIDLYNQG 125 Query: 145 NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLL 204 D + VE L+LDEADRMLDMGF +DI I R QT+LFSATL D I+ LL Sbjct: 126 LVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLP-DEIKHLVSDLL 184 Query: 205 EDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHEL 264 DP+++ + +KI+Q Y D + +K LL+ LL+ P+ +IVFVR + V L Sbjct: 185 NDPLKIMISSGNVTVEKINQSLYFVDKV-NKAKLLIKLLENPQIYNAIVFVRTKRNVDTL 243 Query: 265 ANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFD 324 L +A I + G+ Q R A+ +V VLVA+D+AARGIDI +++HV NFD Sbjct: 244 CKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHVINFD 303 Query: 325 MPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE----------PIKAR 374 +P + Y+HRIGRTARAG G AI+ + LL + ++I + P+K Sbjct: 304 LPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNPYYPMKDL 363 Query: 375 VIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKP 432 I E + K++ E Q + K L K+ +KK + +KK + ++ KRR+P Sbjct: 364 SIPEKKHKSKKKGETQKSRDKAKHL-KQGQKKLSVRTNN--IKKNSKTKRSNFKRRRP 418 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 147/354 (41%), Positives = 209/354 (59%), Gaps = 11/354 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++L L E+ L A++ G+ PT +Q AIP L+GRD++ +A TGTGKTAA+LLP Sbjct: 1 MQNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 60 Query: 63 LQHLLDFPRKKSG--PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L L PR K G PR+L+++PTRELA Q+S ++ + T + T+ GG Y Sbjct: 61 LSTL---PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQI 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 D+++AT GRL + + D +++L+LDEADRMLDMGF + I T Sbjct: 118 NEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPA 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDP--VEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +QTLLFSAT++ +IQ LL DP VE++ N T + + Q+ + + K L Sbjct: 178 DRQTLLFSATID-HSIQKNLGSLLNDPAVVEIARNGETAQ--TVEQFMMPIANFK-KPEL 233 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L LL++ + R IVF R + R + A L +AG + + QG+R A+ GR Sbjct: 234 LQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGR 293 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 ++LVATDV ARGID+PDV HV NFD+P + Y+HRIGRT RAG +G A+S V Sbjct: 294 TSILVATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFV 347 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 257 bits (656), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 199/373 (53%), Gaps = 6/373 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F D +++ ++ G+ PT IQA AIPP + G DV+G A TGTGKTAAY LP +Q Sbjct: 2 SFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPIIQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L PR G R L++ PTRELA Q+SD R L + + +I GGV Sbjct: 62 KMLSTPR---GRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLR 118 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+VVA GRLL +I D VETLI+DEADRM DMGF DI+ I QT Sbjct: 119 SGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQT 178 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + ++ +PV V T+ KT LL+ +LK Sbjct: 179 LLFSATMPPE-VRKLTLETQTNPVTVQVG--TQSPVSSVSHSVYPVKSHQKTPLLLEILK 235 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 E ++F R + LA+ + +AG L+G + Q +R+ ++ G +LVA Sbjct: 236 TVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+DI +SHV N+DMP S + Y HRIGRT R R G A SLV D ++ + Sbjct: 296 TDIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQ 355 Query: 365 RYIEEPIKARVID 377 R + PI+ +D Sbjct: 356 RLLSSPIQRLRVD 368 >UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM67_9FIRM Length = 424 Score = 256 bits (655), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 216/370 (58%), Gaps = 8/370 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L + E L +AL +G PT IQ A+IP G+D++G + TGTGKT AYLLP Sbjct: 1 MNAFIKLGVIEPLAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 +Q + K G ++LI+TPTRELA Q+ D R A D+A I GG N + Sbjct: 61 VQRV----DVKKGGTQVLIMTPTRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQK 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 I++ T GRLL +I+ + D V+T++LDEAD+ML GF +DI+ + ET ++ Sbjct: 117 LKREPHIIIGTPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKR 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT+ +A + A + ++ V V+ + Q Y HK +LLV Sbjct: 177 QVLLFSATMPPEA-KKLAHKYMKSAV-VADVAEKAVASTVEQRVYETVK-THKFSLLVRH 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLR-EAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LK+ ++VF RE HELA L+ E + + G M QG+RN+ I+ + R V Sbjct: 234 LKEINPYMAVVFCNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQV 293 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVA+D+AARG+D+ ++HVFN+D+PR+ + Y+HRIGRT RAG +G +I+ D LLL Sbjct: 294 LVASDIAARGLDVEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLR 353 Query: 362 KVGRYIEEPI 371 K+ + I+E I Sbjct: 354 KLEKAIKEII 363 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 256 bits (655), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 150/376 (39%), Positives = 213/376 (56%), Gaps = 20/376 (5%) Query: 11 LDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLL--- 67 L LL+A++ G+ T IQ AIP G D+L SA TGTGKTAA+ LP L + Sbjct: 8 LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67 Query: 68 ------------DFPRKKSGPP---RILILTPTRELAMQVSDHARELAKHTHLDIATITG 112 + +KS R LILTPTRELA QV+D+ ++ +++ + + G Sbjct: 68 HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYG 127 Query: 113 GVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 172 G + ++ + D++VAT GRLL+++ N D V+ L+LDEADRMLDMGF DIE Sbjct: 128 GGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIE 187 Query: 173 HIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDL 232 + + + QTL+FSAT D ++ A +LL+ P +S + KI Q Y + Sbjct: 188 KLLLAVKHKHQTLMFSATF-SDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTE- 245 Query: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 E K LL L+ + +VF +E + LA L+ GI G+ QG RN+A++ Sbjct: 246 ERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALE 305 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 + +EG+V VLVATDVAARG+DIPD++ V NF +P + Y+HR+GRT RAG+ GTAISLV Sbjct: 306 QFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLV 365 Query: 353 EAHDHLLLGKVGRYIE 368 D L + + IE Sbjct: 366 SPKDERFLENIEQLIE 381 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 156/377 (41%), Positives = 205/377 (54%), Gaps = 10/377 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T +F+ L L + LL LQD + PT +Q AIP L G+DV+ A TGTGKTA + LP Sbjct: 33 TSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALP 92 Query: 62 ALQHLLD-FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LQ L+ P S R+L+L PTRELA QV K L GGV+ Sbjct: 93 LLQRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQM 152 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + D++VAT GRLL ++ VETL+LDEADRMLD+GFA+++ + Sbjct: 153 MKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPV 212 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QTLLFSAT D I+ A +L PV +S +P KI QW D +K L + Sbjct: 213 QRQTLLFSATFTDD-IRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDK-RNKPDLFM 270 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+ + ++VFV+ R V LA L EAG + G+ Q R A++R G V Sbjct: 271 HLVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQ 330 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD---- 356 +LVATDVAARG+DI D+ V N D+P Y+HRIGRT RAG G A+SLV A + Sbjct: 331 MLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQL 390 Query: 357 ---HLLLGKVGRYIEEP 370 L+G+ R EEP Sbjct: 391 AAIEALIGQTLRREEEP 407 >UniRef50_Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28 n=12 Tax=Embryophyta RepID=RH28_ARATH Length = 789 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 220/377 (58%), Gaps = 5/377 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL L LL A + G+ +PT IQAA IP AL GRD+ SA TG+GKTAA+ LP L+ Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL F K+ R+LILTPTRELA+Q+ + LA+ T + I GG++ V Sbjct: 228 RLL-FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286 Query: 125 ENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DIVVAT GR++ +++ + D + LILDEADR+L GFA +I + R+Q Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ 346 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE--HKTALLVH 241 T+LFSAT+ + +++ + L P+ +SA+PS R + + R ++ A+L+ Sbjct: 347 TMLFSATM-TEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS 405 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + ++ I+F ++ H L AG+ L G + Q +R ++++ + V+ Sbjct: 406 LCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDF 465 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARG+DI V V N+ PR D+Y+HR+GRTARAGR+G A++ V D LL Sbjct: 466 LIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLK 525 Query: 362 KVGRYIEEPIKARVIDE 378 + + + +K+RVI E Sbjct: 526 VIAKKVGSKLKSRVIPE 542 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/421 (37%), Positives = 224/421 (53%), Gaps = 19/421 (4%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L +SL+ ++ G+ PT IQA A+P ++G D++G A TGTGKTAA+LLP L Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILH 61 Query: 65 HLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+ P R +S PR LIL PTRELA Q+ + + T L I GGV Sbjct: 62 RLITNPARTRS--PRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRAL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D++VA GRLL ++ + N +ETL+LDEAD M DMGF DI+ I ++Q Sbjct: 120 RQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVS----ANPSTRERKKIHQWYYRADDLEHKTALL 239 TLLFSAT+ AI A L DPV V A ST E H Y + + K LL Sbjct: 180 TLLFSATMP-PAISGLAAETLTDPVTVRIGHLAPLSTVE----HAIYPVSHN--QKAPLL 232 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +HLL + IVF R + R LA L +G L+G + Q +R A+ G Sbjct: 233 LHLLGEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSF 292 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATD+AARGID+ V+HV NFD+P + + Y HRIGRT RA R G A + V D + Sbjct: 293 QILVATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGM 352 Query: 360 LGKVGRYIEEPIKARVIDELRP-----KTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 + + ++++P+ R ++ P + AP+ + +P + A R ++++ Sbjct: 353 VRAIESHMKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGD 412 Query: 415 R 415 R Sbjct: 413 R 413 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 214/368 (58%), Gaps = 7/368 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FSEL L + +L AL D G+ +P+ IQ IP L G DVLG A TG+GKTAA+ LP L Sbjct: 7 SFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLN 66 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF 123 ++ D K P+I+ILTPTRELA+Q+ L+K+ ++I + GG Y + Sbjct: 67 NI-DLKLK---LPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSL 122 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 N IVV T GR+L + ++ + + + +LDEAD ML MGF +D+E+I ++ + Q Sbjct: 123 KRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ AI +R ++ P E+ S R I Q Y+ L ALL L Sbjct: 183 TILFSATMPA-AIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALL-RFL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + I+FVR + E+++ L + G N+ L G+M Q R + + R G +++LV Sbjct: 241 EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + +L + Sbjct: 301 ATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNI 360 Query: 364 GRYIEEPI 371 R I+E + Sbjct: 361 ERNIKEKL 368 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/354 (42%), Positives = 207/354 (58%), Gaps = 5/354 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T F+ L L E LL A+ ++ + PT IQA +IP L+G D++G A TGTGKTAA++LP Sbjct: 55 VLTDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLP 114 Query: 62 ALQHLLDFPRKKSGP--PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L H + R + P R L+L PTRELA Q++D AR K T +A + GG Sbjct: 115 IL-HRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQ 173 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 A D++VAT GRLL ++ AVET++LDEAD+MLD+GF I I + Sbjct: 174 ARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLP 233 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++Q ++FSAT+ I+ A L DP EV+ + ++ +I Q E K L Sbjct: 234 RQRQAVMFSATMP-KPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAP-EEKKDKL 291 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL R+IVF R + ++ L +AGI + G QG+R A+ + GR+ Sbjct: 292 AWLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRI 351 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 VLVATD+AARGID+ +VSHV NF++P ++Y+HRIGRTARAG +G AISLVE Sbjct: 352 RVLVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVE 405 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 220/372 (59%), Gaps = 7/372 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + T F+ L L +LL A++++G+ +P+ IQ +IP L+G+DVLG A TGTGKTAA+ LP Sbjct: 4 SSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLP 63 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 L + R+ P++L+L PTRELA QV+ +KH +++ +A+I GG + + Sbjct: 64 LLARTQNEVRE----PQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQF 119 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + VV T GR++ +I+ + ++LDEAD ML MGF D++ + + Sbjct: 120 RALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPE 179 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LFSAT+ I+ AE+ L +P E+ T + I Q Y+ ++ ALL Sbjct: 180 KRQIALFSATMP-KQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALL- 237 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + + E +VFVR ++ E+A+++R G+ L G++ Q +R A+ RL +G+V+ Sbjct: 238 RICETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVD 297 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI V + +L Sbjct: 298 MLVATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRML 357 Query: 361 GKVGRYIEEPIK 372 + R + I+ Sbjct: 358 STIERVTRKKIQ 369 >UniRef50_C0Z3A8 AT4G16630 protein (Fragment) n=4 Tax=Viridiplantae RepID=C0Z3A8_ARATH Length = 617 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 220/377 (58%), Gaps = 5/377 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL L LL A + G+ +PT IQAA IP AL GRD+ SA TG+GKTAA+ LP L+ Sbjct: 106 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 165 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL F K+ R+LILTPTRELA+Q+ + LA+ T + I GG++ V Sbjct: 166 RLL-FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 224 Query: 125 ENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DIVVAT GR++ +++ + D + LILDEADR+L GFA +I + R+Q Sbjct: 225 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ 284 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE--HKTALLVH 241 T+LFSAT+ + +++ + L P+ +SA+PS R + + R ++ A+L+ Sbjct: 285 TMLFSATM-TEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS 343 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + ++ I+F ++ H L AG+ L G + Q +R ++++ + V+ Sbjct: 344 LCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDF 403 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARG+DI V V N+ PR D+Y+HR+GRTARAGR+G A++ V D LL Sbjct: 404 LIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLK 463 Query: 362 KVGRYIEEPIKARVIDE 378 + + + +K+RVI E Sbjct: 464 VIAKKVGSKLKSRVIPE 480 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 212/375 (56%), Gaps = 11/375 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +V F+EL L+E++L AL GF PT IQAAAIP L+GRD LG A TGTGKTAA+ LP Sbjct: 32 SVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLP 91 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 L + + + K P+ +I+ PTRELA+QV+ + L + L + I GG + ++ Sbjct: 92 LLNKI-NLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 147 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S IVV T GR+ + + T +LDEAD ML MGF D+ I + Sbjct: 148 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 207 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q +LFSAT+ ++ +R L +P +V + K+ Q Y+ +E A+ Sbjct: 208 SAQRVLFSATMP-PMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAM-S 265 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL+ E SIVFVR R+ LA+WL G L G++ Q R + + +G ++ Sbjct: 266 RLLETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVID 325 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDV ARG+D+P ++HVFN+D+P ++Y+HRIGRT RAGRKG AI LV + +L Sbjct: 326 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRML 385 Query: 361 GKVGRYIEEPIKARV 375 R IE K+++ Sbjct: 386 ----RTIERVTKSQM 396 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/351 (39%), Positives = 209/351 (59%), Gaps = 6/351 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F +L L E + +A+++ G+T+PT +Q IP L+G+DV+ +A TGTGKTAAY LP L Sbjct: 2 VFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLL- 60 Query: 65 HLLDFPRKKSGPPRI---LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 H+L+ +KS ++ LIL PTRELA QV + K+ L A I GGV + A+ Sbjct: 61 HILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAK 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + DI++AT GRLL+++K N D VE ++ DEADR+LDMGF +++ + G + Sbjct: 121 KLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKK 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFS L +++ +E L+ PV V+ N KK+ Q Y D E K LL Sbjct: 181 RQTLLFSVGLS-KSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDK-ERKCELLSF 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + +VF + ++ E+ +L +G+ L G+ KR +AI E + V Sbjct: 239 MIGTHNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 LVATD+A+RG+DI D+ +V N+++P + Y HR GRT RAG++G AISLV Sbjct: 299 LVATDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLV 349 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/360 (40%), Positives = 209/360 (58%), Gaps = 10/360 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF++L++ +L A+ D G+ PTAIQAA IP + G DV+G A TGTGKTAA+ +P Sbjct: 11 SAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIP 70 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSD-HARELAKHTHLDIATITGGVAYMNHA 120 L + D K P+ L+L PTRELA+QV++ R A + L++ I GG +Y Sbjct: 71 MLSKI-DITSKV---PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQL 126 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +VV T GR++ +++ D V+ L+LDEAD ML MGFA D+E I ET Sbjct: 127 AGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPE 186 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ LFSAT+ AI+ + + L DP EV+ T + I Q Y + + K L Sbjct: 187 YKQVALFSATMP-PAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQ---VARKMDALT 242 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ IVFVR ++ E+A LR G + + G++ Q +R I L +G ++ Sbjct: 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD-HLL 359 +LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G A+ V + HLL Sbjct: 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 210/368 (57%), Gaps = 8/368 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F L L +L A+ D GFT P+AIQA AIP L GRD+ G A TGTGKTAA+ LP L Sbjct: 51 FDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLAS 110 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAEVFS 124 + + R + L+LTPTRELAMQV++ A H + + ++ GG Y+ Sbjct: 111 V-EAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALR 169 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +VV T GR++ +++ L+LDEAD ML MGFA+D+E I ++Q Sbjct: 170 DGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQV 229 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ A+ L DPVE++ + +HQ Y HK L +L Sbjct: 230 ALFSATMP-PAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVP-FRHKVGALTRILA 287 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +A SIVF R R E+ L E GI+ + G++ Q +R + ++RL G ++VLVA Sbjct: 288 TSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVA 347 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V NFD+PR + Y+HRIGRT RAGR G A+S V H+ GK+ Sbjct: 348 TDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHER---GKL- 403 Query: 365 RYIEEPIK 372 ++IE IK Sbjct: 404 KFIENTIK 411 >UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QS74_9SPHI Length = 475 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 208/384 (54%), Gaps = 12/384 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M +T+F + EL+ LL A+ + G+T PT IQ IP +L DVLG A TGTGKTAAYLL Sbjct: 1 MEITSFEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L + + + K+ PR LIL PTREL MQ++ EL K+T L + GG+ Sbjct: 61 PILMKV-KYAQGKN--PRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQI 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E DI+VAT GR + + + + T++LDEAD+M+DMGF I I Sbjct: 118 ETLRNGVDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPT 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LLFSAT G ++ + LE P++V P + Q Y A + K +L Sbjct: 178 KRQNLLFSATF-GGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLD 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINN---CYLEGEMVQGKRNEAIKRLTEG 297 +L++Q + R I+F R + + +L I + Q R A+ EG Sbjct: 237 YLMRQEDFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEG 296 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + VLV+TDVAARGID+ +VSHV NFD+P + Y+HRIGRT RA R G AI+ + + Sbjct: 297 NIQVLVSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEE 356 Query: 358 LLLGKVGRYIE-----EPIKARVI 376 + K+ R I+ +P+ A V+ Sbjct: 357 YHVQKIERIIKATIPRQPLPAGVV 380 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 213/368 (57%), Gaps = 7/368 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L ES+++A+ G+ P+ IQAA IP L+GRDVLG A TGTGKTAA+ LP L + Sbjct: 11 FAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 + D + K P+ L+L PTRELA+QV++ + + K + + GG Y Sbjct: 71 I-DLQQIK---PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALR 126 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IVV T GR++ ++ D ++TL+LDEAD ML MGF D+E + + ++Q Sbjct: 127 RGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQV 186 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ I+ A+ L+DPVEV+ T I Q Y+ + HK L +L+ Sbjct: 187 ALFSATMP-PQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGM-HKLDALTRILE 244 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + ELA+ L+ G+ + G+M Q +R I L EG++++LVA Sbjct: 245 VEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVA 304 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI + +L ++ Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIE 364 Query: 365 RYIEEPIK 372 R +PI+ Sbjct: 365 RATRQPIE 372 >UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=B8JG82_ANAD2 Length = 488 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 222/396 (56%), Gaps = 22/396 (5%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L E L+AL+ GF PT IQA AIPPAL GRDV+G+A TGTGKTAA+LLP ++ Sbjct: 16 TFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIE 75 Query: 65 HL-------LDFPRKKSGPP--RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVA 115 L D P G P R L+L PTRELA+Q++ + H+ A + GGV Sbjct: 76 RLGGGAPAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVG 135 Query: 116 YMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA 175 M + +++VAT GRL+ ++++ +E L+LDEADRMLDMGFA ++ I Sbjct: 136 -MGAQSAALRDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRIL 194 Query: 176 GETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 +QTLLFSAT+ G+ + +FA L DPV V S ++ Q + + E K Sbjct: 195 ARVPKVRQTLLFSATMAGE-VAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQRE-K 252 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL+ LL++ + + ++VF R + R ++A L+ AG + + Q +R A++ Sbjct: 253 LPLLMALLEEDDLS-TLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFR 311 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 +G+ VLVATD+AARGID+ ++ HV NFD+P + Y+HR+GRTAR G A + Sbjct: 312 DGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPE 371 Query: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQT 391 + LL + R PI P+ P E T Sbjct: 372 ELDLLRDIERLTRAPI---------PRAEVPREHAT 398 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 151/348 (43%), Positives = 204/348 (58%), Gaps = 7/348 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L E LL A+++ GF+ PTAIQAAAIP L GRDV+G A TGTGKTAA+ LP L H Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 + P K+ + L+L PTRELAMQ + A K +D+A + GG +Y+ + Sbjct: 189 I--DPEKRE--VQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALE 244 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ + AV +LDEAD ML MGFA+D+E IA E + + Sbjct: 245 GGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRIS 304 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ I+ AER L D EV+ + + Q Y + HK L +L Sbjct: 305 ALFSATMP-PPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPE-RHKIGALARVLA 362 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 EA ++VFVR R +L L G+ L G++VQ +R + + RL +G ++VLVA Sbjct: 363 VTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVA 422 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 TDVAARG+D+ + V NFD+PR DTY+HRIGRT RAGR G +I+ V Sbjct: 423 TDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFV 470 >UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI Length = 839 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 217/380 (57%), Gaps = 6/380 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT+F D+ L++A++ +T+PT+IQA A+P AL GRD++G A TG+GKTAA++ P Sbjct: 300 VTSFGHFGFDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPL 359 Query: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL+D K+G P LIL PTREL++Q+ + A+ K +L + GG + ++ Sbjct: 360 LMHLMDQRELKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSK 419 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + +I+VAT GR++ +K + + R V L+LDEADRM MGF + I R Sbjct: 420 ALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPD 479 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK-TALLV 240 +QTLLFSAT + I+ A +L DP+ + + + Q Y + + K LL Sbjct: 480 RQTLLFSATFK-RRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLC 538 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+K ++FV K+ +A+ L N L G+M Q RN+ I + + Sbjct: 539 HLVKFLAEGSCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECD 598 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +L+ATDVAARG+DIP + +V N+D+ R DT+ HRIGRT RAG KG A +LV D Sbjct: 599 ILIATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFA 658 Query: 361 GKVGRYIE---EPIKARVID 377 G + R +E +P+ + +++ Sbjct: 659 GHLVRNLEGADQPVPSDLLE 678 >UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Veillonella RepID=D1BLQ6_VEIPT Length = 432 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 151/435 (34%), Positives = 236/435 (54%), Gaps = 15/435 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L + + L+ ALQ +G PT IQ +IP G DV+ A TGTGKT A+LLP LQ Sbjct: 3 SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62 Query: 65 HL-LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + D +++ +LI+ PTREL Q+SD A+EL ++DI + GG + Sbjct: 63 RVHTDVHQEQ-----VLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +++ T GRLL + K + + ++LDEAD+ML MGF DIE++ +T +Q Sbjct: 118 GRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT+ D I++ A+ + P+ V+A + I Q Y + E KT L+ ++ Sbjct: 178 LLLFSATIP-DKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNP-EEKTQRLIKMI 235 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +IVF KRE L+ L AG+N + G++ QG+R + ++ + + +LV Sbjct: 236 EDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILV 295 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGIDI ++HV+N+D+PR D Y+HRIGRT RAG G A++ D L ++ Sbjct: 296 ATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRI 355 Query: 364 GRYIEEPIKARVID-ELRPKTRAPS----EKQTGKP--SKKVLAKRAEKKKAKEKEKPRV 416 R I+ + D +++ K A + K KP + + +A+ KA+ + Sbjct: 356 ERAIQATLTKYTKDGQIKTKGNASTAPKRTKLVSKPKVTSTYQSTKAKAHKARGHKGSNT 415 Query: 417 KKRHRDTKNIGKRRK 431 ++R T G+R K Sbjct: 416 RQRRASTSQTGRRGK 430 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 153/412 (37%), Positives = 221/412 (53%), Gaps = 24/412 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF++L L +LEAL+D G+ P+ IQ AIPP L G D++G A TG+GKTAA+ LP Sbjct: 1 MTTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++++ R L+LTPTREL +QV+ R +D+ + GG + Sbjct: 61 MEYVDPSDRDVQA----LVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQ 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 IVV T GR+ I + ++LDEAD MLD+GF +D+E I T + Sbjct: 117 LRAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSR 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ + I+ +ER L +PV V +T + Q+ + K +L + Sbjct: 177 QTALFSATMPPE-IRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRD-KPDMLGTV 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + ++IVFVR + R +L LR+ G+N L G+M QG+R+ + GR+ +L Sbjct: 235 LESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV NFD+P S D Y+HRIGRT R GR G AI+ ++ Sbjct: 295 VATDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSK------- 347 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 + R I+ + TR P T +V A R E K + + KP Sbjct: 348 ---------QKRDIEAIERHTRTPMAPWTA--GARVAALRVEVKPKRHESKP 388 >UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacteria RepID=C5CB97_MICLC Length = 611 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 145/364 (39%), Positives = 208/364 (57%), Gaps = 14/364 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++ + +++EAL+ KG P IQA +P AL G D++G A TGTGKT + +PALQ Sbjct: 38 TFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQ 97 Query: 65 HLLDF---------PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVA 115 + + +G P+ LI+ PTRELA+QV+ A L IATI GG A Sbjct: 98 RAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRA 157 Query: 116 YMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA 175 Y E +IVV T GRL+ +++ + V T++LDEAD MLD+GF D+E + Sbjct: 158 YEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLL 217 Query: 176 GETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEV-SANPSTR--ERKKIHQWYYRADDL 232 +QT+LFSAT+ G + A R + P + +A+P +K I Q YRA + Sbjct: 218 AAVPAVRQTMLFSATMPGPVVA-MARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276 Query: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 + K L+ L+ R+I+F R + +A+ L G L G++ QG R +A++ Sbjct: 277 D-KDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 G+V++LVATDVAARGID+ DV+HVFNF P TY+HR+GRT RAG KG A++LV Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 Query: 353 EAHD 356 + D Sbjct: 396 DWED 399 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF+EL L + +L+A+ D GF P+ IQ+ +IP ++G D++G A TGTGKTAA+ Sbjct: 4 IKTFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSII 63 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L ++ +K P+ LIL PTRELA+QV++ +AK+ L+I I GG Sbjct: 64 LNNM----SEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRA 119 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 DIVV T GR+L +++ ++ + V+ L+LDEAD ML+MGF DIE + + Sbjct: 120 LRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDR 179 Query: 183 QTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 QTLLFSAT+ DAI+ ++R ++ D +S +T I Q+YY + + +L Sbjct: 180 QTLLFSATMP-DAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESL-CR 237 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ E +I+F + ++ V EL + ++ G + G+M Q +R +K+ E ++ Sbjct: 238 IIDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDF 297 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGID+ +V+HV N+D+P+ ++Y+HRIGRT RA ++G A +LV ++++L Sbjct: 298 LVATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLK 357 Query: 362 KVGRYIEEPIK 372 ++ + + IK Sbjct: 358 QIEKTTKSKIK 368 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 210/368 (57%), Gaps = 5/368 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+L L++ +++ + G+ PT IQ AIP L GRDVLG A TGTGKTAA+ LP + + Sbjct: 9 FSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINN 68 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + R ++ P++L+L PTRELA+QV++ + AK+ +LD+A I GG Y + Sbjct: 69 MDLESRDRA--PQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +VV TTGR++ +I++ + L+LDEAD ML MGF D+ ++ Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQR 186 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ D I D + L +P ++ T+ + Q + K L LL+ Sbjct: 187 LLFSATIPTD-IADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGF-RKIDALDRLLE 244 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 E I+FV+ + E+A+ L+ G + G+M Q +R + + + +VLVA Sbjct: 245 VEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVA 304 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDV ARGID+ +SHV N+DMP DTY+HRIGRT RAGR+G +ISLV + L + Sbjct: 305 TDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTLE 364 Query: 365 RYIEEPIK 372 R+ P++ Sbjct: 365 RFTGSPMQ 372 >UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=Gammaproteobacteria RepID=A0KXT6_SHESA Length = 491 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 214/381 (56%), Gaps = 2/381 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+L L +L++A+ + G+T PT IQ AIP L G++VL +A TGTGKTA+++LP L Sbjct: 3 FSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 D P+ + R +ILTPTRELA+QV ++ + AK+ L + GGV + E Sbjct: 63 FADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D++VAT GRLL + V L+LDEADRMLDMGF +DI I + ++Q L Sbjct: 123 GVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNL 182 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL ++ A+ + D +E+ + + I QW D + K+ALL HL+++ Sbjct: 183 LFSATLSKQ-VKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDK-DKKSALLSHLIQE 240 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +++++F++ + +L + L + GI Q R + + G+V+ LVAT Sbjct: 241 QNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVAT 300 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 VA+RGIDI ++ V N+D+P D Y+HRIGRT RAG +G AIS V D L + R Sbjct: 301 GVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360 Query: 366 YIEEPIKARVIDELRPKTRAP 386 + I R I PK P Sbjct: 361 RLGHVIVRREIAGFEPKKVVP 381 >UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammaproteobacteria RepID=RHLB_XANC8 Length = 573 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 155/401 (38%), Positives = 218/401 (54%), Gaps = 10/401 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T TFS +L +L+ L+ GFTR T IQA +P AL G DV G A TGTGKT A+L+ Sbjct: 6 LTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLV 65 Query: 61 PALQHLLDFPR---KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 + LL P +K PR LIL PTRELA+Q+ A + L A + GGV Y Sbjct: 66 AVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYD 125 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENF-DCRAVETLILDEADRMLDMGFAQDIEHIAG 176 E+ + D+++AT GRL+ Y+K+ A E +LDEADRM D+GF +DI + Sbjct: 126 KQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLR 185 Query: 177 ET--RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH 234 R +QTLLFSATL ++ A + +P ++ T ++ Q Y D E Sbjct: 186 RMPERGTRQTLLFSATLSHRVLE-LAYEHMNEPEKLVVETETITAARVRQRIYFPSD-EE 243 Query: 235 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 K LL+ LL + E R++VFV + V +A L G L G++ Q KR + R Sbjct: 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 +G++ +LVATDVAARG+ I V +V+N+D+P + Y+HRIGRTAR G +G AIS Sbjct: 304 QKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE 363 Query: 355 HDHLLLGKVGRYIEE--PIKARVIDELRPKTRAPSEKQTGK 393 + L + YIE+ P++ + L P R P G+ Sbjct: 364 RYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGE 404 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 158/380 (41%), Positives = 209/380 (55%), Gaps = 22/380 (5%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+ L + +LL L + G+ PT IQ AIP L GRD+LG A TGTGKTAA+ LP LQ Sbjct: 9 SFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQ 68 Query: 65 HLLDFPRKKSGPPRI---LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L PPR+ L+L PTRELAMQV++ + + + ++ GG + Sbjct: 69 RL----EIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLR 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VVAT GR L +I + T++LDEAD MLDMGFA+ +E I T Sbjct: 125 ALRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGA 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVS-----ANPSTRERKKIHQWYY---RADDLE 233 +QT+LFSATL I A R L +PV V A P E ++ Q Y RA Sbjct: 185 RQTVLFSATLP-PRIAAIAGRHLREPVRVKIAGEKAAPG--ELPRVRQTAYIVPRA---- 237 Query: 234 HKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 293 HK+A L +L + + +I+F R R V EL LR G L G Q R+ + R Sbjct: 238 HKSAALTRVLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMAR 297 Query: 294 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 G +LVATDVAARG+DI VSHV N+D+P + + Y+HRIGRT RAGR+G AI+LVE Sbjct: 298 FRAGTAELLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVE 357 Query: 354 AHDHLLLGKVGRYIEEPIKA 373 +H L+ V R + I+A Sbjct: 358 PREHYLIRNVERLTGQRIEA 377 >UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHW2_LIBAP Length = 465 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L+ R + PR LIL PTRELA QV+D+ + K+ +L +A + GG+ + + Sbjct: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QTL Sbjct: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ D +Q +E L++P + N PS+ H + K ALL LL+ Sbjct: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 Query: 245 QPEATRS-IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + ++ I+F +++ V L + L + G + C + G + Q R + + EG + ++V Sbjct: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 A+D+AARG+DIPDV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 Query: 364 GRYIEEPI 371 + IE+ + Sbjct: 361 EKLIEKKV 368 >UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZLE2_GLUDA Length = 390 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 154/378 (40%), Positives = 206/378 (54%), Gaps = 11/378 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F L LD ++ + G+ P+ IQA AIPP DGRDV A TGTGKTAA+ LP Sbjct: 13 IPAFDTLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPV 72 Query: 63 LQHLLDFP--RKKSGPP---RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 + LL SGPP R LIL+PTRELA Q + R + L +A GG Sbjct: 73 IHRLLTGAGGAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKD 132 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 A + DI+VAT GRLL ++ + L+LDEADRMLD+GF +D+ IA Sbjct: 133 RQARALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAAR 192 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R QTLLFSAT+ AI +LL P++++ +I Q K A Sbjct: 193 LPVRHQTLLFSATMS-PAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTP-AARKAA 250 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L+ +L++ R++VF R ++ LA L G+ L G+ Q +R+ + G Sbjct: 251 SLLAVLRREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRG 310 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 R+ VLVATDV ARGID+ DV+ V NFD+P +TY+HRIGRTARAGR+GTA+SL + + Sbjct: 311 RLLVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAER 370 Query: 358 LLLGKVGRYIEEPIKARV 375 L L R IE AR+ Sbjct: 371 LKL----RDIERQSGARI 384 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 210/370 (56%), Gaps = 7/370 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ F+EL L E LL+AL+D G+ P+ IQAA IPP L GRDVLG A TGTGKTAA+ LP Sbjct: 6 ISPFAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPI 65 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAE 121 L + R L+L PTRELA+QV++ A H ++ I GG +Y+ Sbjct: 66 LAKIDCNARHTQA----LVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLA 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VV T GR++ +++ + ++LDEAD ML MGF D+E I +T + Sbjct: 122 SLKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQ 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q LFSAT+ AI+ A+ L DP E++ +T I Q Y+ L HK L Sbjct: 182 RQVALFSATMP-SAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGL-HKLDALTR 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L+ I+F R ++ ELA L G L G++ Q R ++RL +G++++ Sbjct: 240 ILEVEPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDI 299 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI V + LL Sbjct: 300 LVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLR 359 Query: 362 KVGRYIEEPI 371 + R +PI Sbjct: 360 AIERATRQPI 369 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/388 (36%), Positives = 216/388 (55%), Gaps = 12/388 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F +L LD +L AL++ GF P+ IQ AIP AL+G D++G A TGTGKTAA+ +P Sbjct: 18 ITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPI 77 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 +Q + +K + L+++PTREL +QV+D ++ K + + + GG Sbjct: 78 IQKI----NEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRS 133 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +V+ T GRLL +I+ D V L+LDEAD MLDMGF D+E+I + Sbjct: 134 LKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPER 193 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I +++ + P V+ + I Q+YY D K L + Sbjct: 194 QTMLFSATMP-RPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRD---KVDGLCRI 249 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + + I+F R ++ V EL L G L G++ Q +R+ +K+ G+V++L Sbjct: 250 LDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDIL 309 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI +++HV NFD+P ++Y+HRIGRT RAG G A++ + + L Sbjct: 310 VATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQL-- 367 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQ 390 + IE IK ++I P + E+Q Sbjct: 368 --KLIERSIKTKIIRGTLPTDASVLERQ 393 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/353 (38%), Positives = 206/353 (58%), Gaps = 3/353 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++L L + LL+A+ + G+ PT +QAAAIP L RD++ A TGTGKTA+++LP + Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMID 75 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L R ++ PR LIL PTRELA QV+++ + K+ L ++ + GGV Sbjct: 76 -ILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + D+++AT GRLL + + E L++DEADRMLDMGF DIE I + +QT Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ AI+ A+R L +P ++ + I Q K L L Sbjct: 195 LLFSATMP-PAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRA 253 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + T +I+F ++ V +LA L + G + + G+M Q +R ++R G+++VLVA Sbjct: 254 EKDHT-AIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVA 312 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 +D+AARG+D+ +SHVFNFD+P D Y+HRIGRT R G G A++ V D Sbjct: 313 SDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADE 365 >UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1FAF2_ACIC5 Length = 430 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/346 (40%), Positives = 198/346 (57%), Gaps = 6/346 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSEL L L L F PT +Q AAIPPA++G+DVL +A TGTGKT +LLPA++ Sbjct: 3 FSELNLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAMER 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LL K P +LILTPTRELA+QV +LA + AT+ GG + N Sbjct: 63 LLA---TKGKHPAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIRDLKA 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 ++VAT GRL +++ D + +E L+LDEADRMLDMGF I I + ++QT+ Sbjct: 120 GARLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQTM 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT++ A+ + +L +PV +S + + + Y D + A LVH + Sbjct: 180 CFSATID-PAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVD--ADQKAALVHRVVT 236 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 E +S+VFV + R +A L AGI+ L G+ Q +RN A++ GR VLVAT Sbjct: 237 AEEGQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLVAT 296 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 351 DVA+RGI + +++ V N+DMP+ + ++HR GRT RAG G A + Sbjct: 297 DVASRGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATF 342 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 209/370 (56%), Gaps = 10/370 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E+EL + +A+ D GF P+ IQA AIP + G+D++G A TGTGKTA + +P + Sbjct: 20 FGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAET 79 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L + G + L+L PTRELA+QV+ ++ + L + GG + Sbjct: 80 L----NPRDGRVQALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRY 135 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +V+ T GR+L ++ + V ++LDEAD MLDMGF +DIE I ET +QTL Sbjct: 136 GVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTL 195 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ G IQ A + +++P V+ + I Q YY + K L +L Sbjct: 196 LFSATMPG-PIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKE-SQKVDALCRILDM 253 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 E SI+F R + V EL L G L G++ Q +R+ +K+ +G+ +L+AT Sbjct: 254 EEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIAT 313 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ +V+HV N+D+P+ ++Y+HRIGRT RAGRKG AI+L+ ++ L + Sbjct: 314 DVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQL----K 369 Query: 366 YIEEPIKARV 375 IE KAR+ Sbjct: 370 LIERVTKARI 379 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 154/386 (39%), Positives = 207/386 (53%), Gaps = 11/386 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L ++ E ++ G+ PT IQA AIP +GRD++G A TGTGKTAA+LLP + Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ +K G R LIL PTRELA Q+ +L + T L A I GGV Sbjct: 62 RLMTTKSEKRGV-RALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALR 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI+VA GRLL ++ + N A+ETL+LDEAD M DMGF DI+ I +QT Sbjct: 121 QGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQT 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH--KTALLVHL 242 LLFSAT+ AI A L DPV V H Y + H K LL+HL Sbjct: 181 LLFSATMP-PAISGLAHETLTDPVTVRIGHMAPLSTVEHAIY----PISHTQKAPLLLHL 235 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L++ IVF R + R LA L +G L+G + Q +R A+ G VL Sbjct: 236 LEEAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVL 295 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGID+ V HV NFD+P + + Y HRIGRT RA +G A + V D ++ Sbjct: 296 VATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRA 355 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSE 388 + ++++P+ R ++ P PSE Sbjct: 356 IESHMKKPLPRREVEGFEPD---PSE 378 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 219/370 (59%), Gaps = 10/370 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++L L LL+A+ D G+T PT IQ AIP + G+DV+G A TGTGKTA + LP L Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61 Query: 65 HLLDFPRKKSGPPR----ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + + P R LIL PTRELAMQV + + +KH L + GGV Sbjct: 62 RIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQ 121 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +IV+AT GRLL ++++++ + VE L+LDEADRMLDMGF DI+ I Sbjct: 122 AELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLPK 181 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDP--VEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++Q+LLFSAT D I+ A+++L++P +EV+ E H + + + K L Sbjct: 182 QRQSLLFSATFS-DEIKRLADQMLKEPQLIEVARRNMVSE-TITHVVHPVSSGM--KRNL 237 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L HLL+ T+++VFV + LA++L +GI+ + G+ Q +R + ++ G+ Sbjct: 238 LAHLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGK 297 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + VLVATDVAARG+DI ++ V NF++P + + Y+HRIGRT RAG G AISLV + + Sbjct: 298 LRVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKH 357 Query: 359 LLGKVGRYIE 368 L ++ + I+ Sbjct: 358 WLSEIEKLIK 367 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 241/478 (50%), Gaps = 49/478 (10%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F +L L LL+A+++KG+ PTAIQA AIP L GRD+L A TGTGKT A+ LP +Q Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L R PR LILTPTRELA+QV + + A+ L GGV Sbjct: 62 -ILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLE 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI+VAT GRLL +E+ ++E L+ DEADRMLD+GF+ +I I ++T Sbjct: 121 RGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRT 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT I+ A ++L+ P + P T + + Q + + ++K LL+HL++ Sbjct: 181 MLFSATYT-PQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNK-DNKLPLLLHLIE 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + R +VF R R + L + L GI+ L G Q R ++ +G++++LVA Sbjct: 239 KQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVA 298 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+DI ++ V N+D+P S + Y+HRIGRT RAG G A+SLV + LL + Sbjct: 299 TDVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIE 358 Query: 365 RYIEE--PIKA----------------------------RVIDEL--------------- 379 + P++A R I EL Sbjct: 359 DLLRHQIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLTVQGRG 418 Query: 380 -RPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTG 436 +PK P G ++K A++AE K + KPR + + GK P G Sbjct: 419 KKPKDAGPESTTRGNKNEKSDARKAEDKDTRPDSKPRGRSTGKPDARSGKDSGPDAKG 476 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 140/357 (39%), Positives = 212/357 (59%), Gaps = 6/357 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF +L + + +AL+ +G P IQ A+P AL+G+D++G A TGTGKT A+ + Sbjct: 38 LTTFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAM 97 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ + PRK PR L++ PTRELA+QV++ A I T+ GG AY E Sbjct: 98 LQRV-GKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEA 156 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + D++V T GRLL +K+++ D ++ L+LDEADRMLD+GF DIE I ++ Sbjct: 157 LKQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKR 216 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERK---KIHQWYYRADDLEHKTALL 239 QT+LFSATL G+ + + R L P V A + E + + Q+ +RA ++ K ++ Sbjct: 217 QTMLFSATLPGEIVA-LSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMD-KIEIV 274 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL+ +++F + + L+E G + G++ QG+R +A++ G++ Sbjct: 275 GRLLQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKI 334 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 +VLVATDVAARGID+ DV+HV N+D P+ Y+HRIGRT RAG+ G A++ VE D Sbjct: 335 DVLVATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWED 391 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 144/376 (38%), Positives = 211/376 (56%), Gaps = 5/376 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FS+ +L +L+AL +G+ PT IQA AIP ++G D+LG A TGTGKTAA+ LP Sbjct: 1 MTKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPL 60 Query: 63 LQHLLDFPRKKS-GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL P G R L++ PTRELA Q+++ + + L + + GGV Sbjct: 61 LHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRL+ +++ D VE L+LDEAD+MLD+GF + IA Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTL FSAT+ + + A + L +P +VS + +++ Q + + LLV+ Sbjct: 181 RQTLFFSATMPSN-VSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVN 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + R++VF R + ++ + L AGI + G Q +R A+ G V Sbjct: 240 LQDE-SIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+P VSHVFN+++P + Y+HRIGRTARAGR+G AIS V + L Sbjct: 299 LVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLL 358 Query: 362 KVGRYIEEPIKARVID 377 + R I +K ++D Sbjct: 359 DIQRQIR--MKIPIVD 372 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 210/376 (55%), Gaps = 7/376 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T+ +F +L L E LL+AL ++G+T PT IQ AIP LD RD+LG A TGTGKTAA+ + Sbjct: 24 LTILSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAI 83 Query: 61 PALQ--HLLDFPRKKSGPPRI--LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 P LQ H +++ G I LILTPTRELA+Q+ + K L I GGV+ Sbjct: 84 PLLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQ 143 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 E + DI++AT GRLL I + R ++ +LDEADRMLDMGF D++ + Sbjct: 144 HPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIV 203 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLL-EDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 + ++Q+L FSAT+ + IQ A+ +L +P +V P + + I Q Y + K Sbjct: 204 KLPEQRQSLFFSATMPPE-IQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNK-NDK 261 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL+H+LK +VF R + + L +A I + G Q R A+ Sbjct: 262 RNLLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFK 321 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 + VLVATD+AARGIDI +++HV N+++P +TY+HRIGRT RAG G AIS E Sbjct: 322 SQQTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPE 381 Query: 356 DHLLLGKVGRYIEEPI 371 + L + + I I Sbjct: 382 EKAFLKDILKLISREI 397 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 233/439 (53%), Gaps = 22/439 (5%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +LEL + ++++ G+ PT IQA IP L G+D++ SA TGTGKTAA++LP ++ Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + K L+LTPTRELA QV A+ K+ L + GGV+ + Sbjct: 85 LLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQ 144 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI+VAT GRLL I ++ ++ L+LDEADRMLDMGF +DI+ + +Q Sbjct: 145 GGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQN 204 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 ++FSAT I+ A LL DPVE+ A+ + I + D+ K LL HL+K Sbjct: 205 MMFSATFS-TPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPC-DMARKVDLLCHLIK 262 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + +VF R + ++ L + + G QG R A++ G + +LVA Sbjct: 263 TNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVA 322 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGIDI + +V N D+P + Y+HRIGRT RAG G AISLV A + LLL + Sbjct: 323 TDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIE 382 Query: 365 RYIEEP-------------IKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 ++I P +KA + + + R PS Q+ +P +K A ++ + Sbjct: 383 KFIGNPLPKVDVVGFEQKILKAEPLKQGGQRQRRPS--QSARPGQKAKTNHASSQQRRSD 440 Query: 412 EKPRVKKRHRDTKNIGKRR 430 + K +R T+ G+RR Sbjct: 441 WR---KSSNRSTQ--GERR 454 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 158/452 (34%), Positives = 249/452 (55%), Gaps = 26/452 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL+L++++L+AL D F T +Q IP L G+D+L A TGTGKTAAYLLP L Sbjct: 3 FDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSK 62 Query: 66 LLDFPRKKSGPP----RILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVA---YM 117 L D G P LI++PTRELA Q+ + + + + + + GG Y Sbjct: 63 LAD-----GGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYD 117 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 + + D+++AT GR + +I N D V +LDEADRMLDMGF++DI+ IA + Sbjct: 118 QEIKSLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKK 177 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 QT++FSAT+ I+D A+ LL++P E+ ++ +KI Q Y + + K Sbjct: 178 LPSTCQTIMFSATMPS-KIEDLAKTLLKEP-EMVKLAVSKPAEKIQQSAYVCYETQ-KIE 234 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 ++ + K + R I+F +++V ++A+ L IN + ++ Q +R++ + + G Sbjct: 235 IIKDIFKAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSG 294 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 +++VLVATD+ ARGIDI D++ V N+D+P + Y+HRIGRTARA R G AI+ V D Sbjct: 295 QIDVLVATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDI 354 Query: 358 LLLGKVGRYIEEPI-KARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 ++ ++E+ I K R+ + L P K G+PSK AK + ++ Sbjct: 355 YYFQQIESFLEKTIEKNRLPEAL---GEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDK 411 Query: 417 KKRHRDTKNIGKRRKPSGTGV----PPQTTEE 444 K +R KN ++ +P+ T PQT+E+ Sbjct: 412 KSNYRRVKN--RQEQPAPTDEKEQHKPQTSEK 441 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 220/373 (58%), Gaps = 8/373 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F++L+L LL+AL + G+ P+ IQA IP L G D+LG A TGTGKTAA+ LP Sbjct: 43 IESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPL 102 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAE 121 L L D K P++L+L PTRELA+QV++ + AK+ + + GG + + Sbjct: 103 LDRL-DLAVKN---PQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLR 158 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + ++V T GR++ +I+ ++ + ++ TL+LDEAD ML MGF D+E I T Sbjct: 159 QLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAE 218 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT LFSAT+ DAI+ A R L +P EV ST Q Y + + HK L Sbjct: 219 RQTALFSATMP-DAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQIS-VAHKLDALTR 276 Query: 242 LLK-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + + +I+FVR + ELA+ L G + L G+M Q R I++L G+++ Sbjct: 277 ILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLD 336 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 ++VATDVAARG+D+ +SHV N+D+P + Y+HRIGRT RAGR G+AI V + +L Sbjct: 337 IVVATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRML 396 Query: 361 GKVGRYIEEPIKA 373 + R +PI+A Sbjct: 397 KVIERATRQPIEA 409 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 139/347 (40%), Positives = 199/347 (57%), Gaps = 7/347 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F L +L+ + + GF P+ IQ AIP L+G+D++ A TGTGKTAAY LP L Sbjct: 17 FQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNR 76 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + K ++L+LTPTRELA+QVSD +L KH + TI GG +Y ++ Sbjct: 77 I-----KVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK 131 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 + VAT GRLL +K + +ILDEAD MLDMGF DIE I ++QTL Sbjct: 132 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 191 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ + I+ A + P V + + K I Q YY D+ E + A +V +L Sbjct: 192 LFSATMP-EPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIA-VVRILDY 249 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++I+F + ++ +L + L G L G++ Q +R + +K L +GRV +LVAT Sbjct: 250 ENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVAT 309 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 DVAARG+D+ D+S V N+ +P ++Y HRIGRT RAG+ G A++LV Sbjct: 310 DVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLV 356 >UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Bacteria RepID=C7PAU3_CHIPD Length = 414 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 7/376 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + + E + +L++ GF RPT IQ AIP L G DVL A TGTGKTAA+ +P L Sbjct: 3 FEQYRISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPVLHK 62 Query: 66 LLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + PRK G R +++ PTRELA+Q+S+ LAK+T L+I + GGV + + Sbjct: 63 LQQYHPRKTKGEVRCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQLKKLA 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + D+++AT GR+ I + D LILDEAD MLD+GF +DI + R QT Sbjct: 123 QGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPRRHQT 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ--WYYRADDLEHKTALLVHL 242 L FSAT++ D I+D A ++ +P+ + +P K + Y DD K L L Sbjct: 183 LFFSATIDED-IKDLAYSVVNNPIRIQISPQDPVSKNVQHAVAYVGMDD---KRFFLERL 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +K+ + +VFVR + R +A + GI + + G Q R + + +G + +L Sbjct: 239 VKEFPENKILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 + TDV ARGIDIPDV +V N+D+P + Y+HR+GRT R +KG A+S + +L Sbjct: 299 ITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLDA 358 Query: 363 VGRYIEEPIKARVIDE 378 + +Y+ + I ID+ Sbjct: 359 IQQYLGKEITVMKIDK 374 >UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteobacteria RepID=RHLB_SHEWM Length = 441 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 216/371 (58%), Gaps = 7/371 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++ L++ + AL + GF T IQA ++P L +D+ G A TGTGKT A+L+ H Sbjct: 11 FADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDH 70 Query: 66 LLDFP---RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LL P ++ PR +I+ PTRELA+Q++ A LAKHT L + + GG +Y +V Sbjct: 71 LLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRKV 130 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + DI++ TTGR++ Y+++ + A++ ++LDEADRM D+GF +DI + K Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190 Query: 183 Q--TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +LFSATL +Q+ A + +P +V P+ + K I + + ++ K LL+ Sbjct: 191 SRLNMLFSATLSM-KVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPS-MDEKMRLLL 248 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+++ ++IVF + + +WL G L G++ Q KR +++ TEG+++ Sbjct: 249 SLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLD 308 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+ I DVSHV+N+D+P + Y+HRIGRT RAG+KG ++S L L Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNL 368 Query: 361 GKVGRYIEEPI 371 + YI I Sbjct: 369 PAIEEYITHSI 379 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 222/396 (56%), Gaps = 8/396 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F + + L + LQ G T PT +Q AIP L G+DV+ A TGTGKT A+ LP L Sbjct: 3 TEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPIL 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q + D +++ + LILTPTRELA+Q++ ++LA + GG Sbjct: 63 QRI-DIDKEQV---QALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + + IVVAT GRL+ +++ E + ++ L+LDEAD+ML MGF ++++I +T +Q Sbjct: 119 NNSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ D I+ AE ++ PV++ + I Q D + AL + ++ Sbjct: 179 TMLFSATMP-DQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKAL-ISMI 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +++F R + R +L L++ G + L G++ Q KR + +KR + ++ +LV Sbjct: 237 ETQRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ V+HVFNFD+P + Y+HRIGRT RAG++GTAI++ +D + + Sbjct: 297 ATDVAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHI 356 Query: 364 GRYIEEPIKARVI--DELRPKTRAPSEKQTGKPSKK 397 R I ++ R I D K AP GK K Sbjct: 357 ERSINAILERRTIEADGTIVKNTAPRSSSEGKSYDK 392 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 149/373 (39%), Positives = 212/373 (56%), Gaps = 7/373 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T F L L + +A+++ G+ PTAIQ+ IP L GRD+LG A TGTGKTAA+ LP Sbjct: 7 TSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALP 66 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 L L RK P++L+LTPTRELA+QV++ + A ++ I GG Y Sbjct: 67 MLSRLDPDLRK----PQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQL 122 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N ++V T GR++ +I+ ++ L+LDEAD ML+MGFA+DI+ I + Sbjct: 123 SQLKRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPA 182 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q LFSAT+ AI+ A+ L DPVEV ++ I Q + HK +L Sbjct: 183 ERQVALFSATMP-PAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRF-HKLDVLT 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +++ ++FVR + ELA+ L+ G L G+M Q R ++RL +G+++ Sbjct: 241 RIMELEPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLD 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ +SHV N+D+P Y+HRIGRT RAGR G AI LVE + LL Sbjct: 301 VLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLL 360 Query: 361 GKVGRYIEEPIKA 373 + R I PI + Sbjct: 361 KSIERVIRRPIPS 373 >UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Vibrio alginolyticus 40B RepID=D0WTV5_VIBAL Length = 445 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/436 (37%), Positives = 245/436 (56%), Gaps = 24/436 (5%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +++ FS L L L+ AL K F +PT IQA AIP L G+D+L A TG+GKT AY L Sbjct: 31 VSLMPFSTLSLSSELIHAL-PKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGL 89 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L+ L P +K+ LIL PTRELAMQVS+ ++ + L+ + GGV Sbjct: 90 PLLEKLGVNPEQKA-----LILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQ 144 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + N I+VATTGRL+ + D + L+LDEADR+LDMGF D+++IAG Sbjct: 145 QALATNPHILVATTGRLVD-LANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISN 203 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QT +FSAT D ++ A+ L++ P +V+A+ + I + Y + KT L+ Sbjct: 204 QRQTAMFSATFS-DELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNK-GSKTKALI 261 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+++ T+++VF+ +E LA L +AGI+ L G Q +R EA+ + G++ Sbjct: 262 ELIQKNAWTKALVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQ 321 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VL+ATD+ ARGI I + V NF++P +TY+HR+GRTARAG +G A+SLV H + Sbjct: 322 VLIATDLLARGIHIEQLPVVINFELPMYAETYVHRVGRTARAGEQGVAMSLV-CHGEMDA 380 Query: 361 GKVGRYIEEPIKARVIDELR--PKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 R++ + +A + +L P T PS TG+ +KRA + K K + KK Sbjct: 381 LSAIRHLTQ--RALPVQDLAGFPVTDKPS---TGE------SKRAPRDK-KANRRTNAKK 428 Query: 419 RHRDTKNIGKRRKPSG 434 + + KR PS Sbjct: 429 SIKQFQGKSKRPAPSA 444 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 216/373 (57%), Gaps = 15/373 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L + +A++ GFT+P+ IQ IP + G DV+G A TGTGKTAA+ LP L Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 L KS P+ L+L PTRELA+QV++ + A K ++I I GG Y Sbjct: 193 L----NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLR 248 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++++ + D + ++LDEAD ML+MGF +D+E I +T KQ Sbjct: 249 RGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQV 308 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHL 242 LFSAT+ AI+ ++R L P EV+ + R + I Q Y + H+ L L + Sbjct: 309 ALFSATMPS-AIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLI---VHHREKLDALTRI 364 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + I+FVR + ELA LR G + G++ Q +R + +L +GR+++L Sbjct: 365 LEVTDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDIL 424 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ ++HVFN+D+PR ++Y+HRIGRT RAGR G A+ V + +L Sbjct: 425 VATDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRML-- 482 Query: 363 VGRYIEEPIKARV 375 + IE K+R+ Sbjct: 483 --KSIERATKSRL 493 >UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PH0_SOLUE Length = 422 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 213/372 (57%), Gaps = 5/372 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FSEL L L L FT PT IQ+ AI PAL G+D++ +A TGTGKT A+LLP Sbjct: 1 MTNFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPT 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 +Q L PR+ R LILTPTRELA+Q+++ ++A+ T + A GG+ + Sbjct: 61 IQLLSTEPRQPG--VRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRD 118 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +IVVAT GRL ++ + V LILDE+DRMLDMGF I+ I + Sbjct: 119 IRGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAER 178 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATLE +++ E + + V + ++ +++ Y D + K LL + Sbjct: 179 QTLLFSATLE-SSVKQLVETHVRNAVRIELGSISKPSEQVDLHLYEVDQ-DRKFGLLEMM 236 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L++ + + +VF R + +LA L ++G + + G+ Q +R +A+K EG VL Sbjct: 237 LREEQGS-FLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVL 295 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGI + +SHV NFD+P+ + ++HR+GRT RAG KGTA + + +G+ Sbjct: 296 VATDVAARGIHVEGISHVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIGR 355 Query: 363 VGRYIEEPIKAR 374 + R + +K R Sbjct: 356 IERTLSVKLKRR 367 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 205/370 (55%), Gaps = 8/370 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+EL L ESL AL GFT PT +QAA IP L G DVLG A TGTGKT A+ LP + Sbjct: 6 SFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLID 65 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 + R+ + LIL PTRELA QV+ A L+I + GG Sbjct: 66 SIDPAQRRV----QALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRAL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +VV T GR++ +IK A+ ++LDEAD ML MGF ++IE I +T +Q Sbjct: 122 RDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSAT+ I+ A R + +P E+ I Q Y D HKT L ++ Sbjct: 182 TTLFSATMPA-PIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQ-RHKTEALGRMI 239 Query: 244 K-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + + +IVF R + E+A L G+ + L G+M QG+R + L +GR++V+ Sbjct: 240 EVEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVI 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+P ++HVFN+D P + Y+HRIGRT RAGRKG AI +E +L Sbjct: 300 VATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRD 359 Query: 363 VGRYIEEPIK 372 + R +P++ Sbjct: 360 IERLTGKPVR 369 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 234/418 (55%), Gaps = 20/418 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL + + ++ L+ GF PT IQ +IP AL+G D+LG A TGTGKT A+ +P Sbjct: 1 MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ +S LIL PTRELAMQV++ RE +K + + T+ GG+ + Sbjct: 61 IEKVVGQQGVQS-----LILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET-RWR 181 IVV T GR++ ++ + + TLILDEAD M++MGF D+ I + + Sbjct: 116 LKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ 175 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ AIQ+ ++ ++ P + + +I ++Y +LE Sbjct: 176 RQTMLFSATMP-KAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNF 234 Query: 242 L-LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + QPE +IVF R + RV EL + L G L G++ Q KR E +K+ +++ Sbjct: 235 LDVHQPEL--AIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+DI VSHV+NFD+P+ ++Y HRIGRT RAG++G A++ V + + Sbjct: 293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI 352 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 ++ E + R + LRP P K+ K + + R + ++E E PR+++ Sbjct: 353 RQI-----EDVNNRRMKALRP----PHRKEVLKAREDDIKDRVQNWMSRENE-PRLQR 400 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 209/366 (57%), Gaps = 3/366 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L E + A+ + G+ PT IQA AIP L GRDVLG A TGTGKTA++ LP + Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L D R ++ PR LIL PTRELA+QV+++ + ++ L+ A + GG + + +V S+ Sbjct: 285 LSDR-RARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSK 343 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D+++AT GRL+ L++DEADRMLDMGF D+E I +QTL Sbjct: 344 GVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTL 403 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ + I+ A+ L++P E++ I +++ + AL HLL+Q Sbjct: 404 FFSATMAPE-IRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALR-HLLRQ 461 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + +++F ++ V L L + G L G++ Q R +++ G + +LV + Sbjct: 462 EKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCS 521 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARGIDI +SHVFNFD+P + Y+HRIGRT RAGR+G A +L D + + + Sbjct: 522 DVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEK 581 Query: 366 YIEEPI 371 I PI Sbjct: 582 LINAPI 587 >UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteria RepID=Q7MC00_VIBVY Length = 436 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/414 (36%), Positives = 237/414 (57%), Gaps = 11/414 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L L L+ AL K F +PT IQA AIP L G+D+L A TG+GKT AY LP L+ Sbjct: 27 FSTLSLSSELIHAL-PKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEK 85 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L P +K+ LIL PTRELA QVS+ ++ + L+ + GGV + + Sbjct: 86 LRVNPEQKA-----LILVPTRELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALAT 140 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N I+VATTGRL+ + D + L+LDEADR+LDMGF D+++IA +T ++QT Sbjct: 141 NPHILVATTGRLVD-LANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQTA 199 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 +FSAT D ++ A+ L++ P +V+A+ + I + Y + KT L+ L+++ Sbjct: 200 MFSATFS-DELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNK-GSKTKALIELIQK 257 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 T+++VF+ +E LA L +AGI+ L G+ Q +R EA+ + G+ VL+AT Sbjct: 258 NAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIAT 317 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+ ARGI I + V NF++P +TY+HR+GRTARAG +G A+SLV + L + Sbjct: 318 DLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAIRH 377 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGK-PSKKVLAKRAEKKKAKEKEKPRVKK 418 + + + ++ P T PS ++ + P K +R + KK+ ++ + + K+ Sbjct: 378 LTQRELPVQDLEGF-PVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKR 430 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 205/366 (56%), Gaps = 7/366 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ F + L LL+ + +KGF +PT IQ +IP A+ G D++G A TGTGKTA++ + Sbjct: 1 MSFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L ++ K + L+L PTRELA+QV++ L++ + + I GG + Sbjct: 61 PILNRVI-----KGEGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQL 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N +I+V T GRL+ ++ ++ ++LDEAD MLDMGF DI+ I + Sbjct: 116 RSLRRNPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPR 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT LFSATL D +++ + ++ P + R +I Q+YY+ + K L Sbjct: 176 ERQTFLFSATLP-DEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNS-RRKIETLC 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + S++F R + ELA L G N L G+M Q +R+ + +G Sbjct: 234 RIIDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTK 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATD+AARG+DI V+HVFNFD+P D+Y+HR+GRT RAGR G AI+LVE LL Sbjct: 294 ILVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLL 353 Query: 361 GKVGRY 366 + R+ Sbjct: 354 RMIERH 359 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 212/369 (57%), Gaps = 6/369 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL L S++ A+ + GF T IQ AIP A++G+D++G A TGTGKTAA+ +P ++ Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEA 63 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + R S + L++ PTRELA+QV++ + K + I GG + + + E Sbjct: 64 I----RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEE 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 IVV T GRLL++++ E + +LDEAD+MLDMGF + E I + R+QTL Sbjct: 120 LPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTL 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL +Q A + L+DP + Q+Y + + K L LL Q Sbjct: 180 LFSATLS-PPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPE-KQKFEALTRLLDQ 237 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + +IVFV R RV ELA L E G + L G+++Q +R + + G V++LVAT Sbjct: 238 EKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVAT 297 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DI V+HV+NFD+PR D+Y+HRIGRT RAG GTA + V D L + + Sbjct: 298 DVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQ 357 Query: 366 YIEEPIKAR 374 I+ I ++ Sbjct: 358 AIDHQITSK 366 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 206/391 (52%), Gaps = 9/391 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F + L +++AL + G+ PT IQA A+PPA+ GRD+ G A TGTGKTAA+ LP Sbjct: 1 MTQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPRKKSGP---PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L L K P R+L+L+PTRELA Q++D R+ K + GGV Sbjct: 61 LHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + D++VAT GRLL + + +VE L+LDEAD+MLD+GF ++ I Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q+L FSAT+ + I A + L DPV+V+ P +++ Q K ALL Sbjct: 181 KARQSLFFSATMPKN-IATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVST-GAKQALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L+ R +VF R + + L + GI + + G Q +R A+ G Sbjct: 239 GTILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ V+HV NFD+P + Y+HRIGRTARAG G AIS + Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAY 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQ 390 L R IE + +V + P P +Q Sbjct: 359 L----RDIERLTRQKVPEMAIPVGFVPPSRQ 385 >UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=Deltaproteobacteria RepID=A0LLL9_SYNFM Length = 533 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 210/381 (55%), Gaps = 8/381 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F +L+L +L + D F T IQAA +P L+G D G A TGTGKTA +++ L Sbjct: 116 TRFHDLDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITML 175 Query: 64 QHLLDFPR---KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L P ++ G PR L+L PTRELA+Q+ L++HT I GG+ Y Sbjct: 176 TQFLRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQK 235 Query: 121 EVFS-ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET- 178 + E DIVVAT GRLL + ++ + VE L++DEADRMLDMGF D++ I T Sbjct: 236 RRLTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTP 295 Query: 179 -RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 + ++QT+LFSATL + + FA + +PV V P ++Q ++ K Sbjct: 296 PKAQRQTMLFSATLTAE-VTRFASQWTRNPVTVEIEPEQVAVDTVNQRVL-ITTIDEKFT 353 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL +++ + R IVF +R++ L L GI+ L GE+ Q KR + ++ G Sbjct: 354 LLFNMITRQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNG 413 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 ++ VLVATDVAARG+ + VSHVFN++MP + Y+HRIGRT RAG G ++S D Sbjct: 414 KIRVLVATDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDS 473 Query: 358 LLLGKVGRYIEEPIKARVIDE 378 L+ + +Y+ I DE Sbjct: 474 FLIPALEKYLGHEIHCEHPDE 494 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 212/367 (57%), Gaps = 7/367 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L E LL LQ+ G+ P+ IQAA IP L+ RDVLG A TGTGKTA++ LP L Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + D K P+ L+L PTRELA+QV++ + A + + I GG +Y Sbjct: 69 I-DI---KQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALR 124 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++++ + D ++T++LDEAD ML MGF D+E I +T +QT Sbjct: 125 RGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQT 184 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ A L DP ++ T I Q Y+ ++ K L +L+ Sbjct: 185 ALFSATMP-SAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQ-KLDALTRILE 242 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + ELA+ L+ G + + G++ Q +R I++L +G++++LVA Sbjct: 243 AENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ +SHV N+D+P ++Y HRIGRT RAGR G AI + + LL + Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362 Query: 365 RYIEEPI 371 R +PI Sbjct: 363 RATRQPI 369 >UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Proteobacteria RepID=C6E4K1_GEOSM Length = 490 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 237/445 (53%), Gaps = 28/445 (6%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL++ + + + + GFT+ T IQ A+P AL G+DV G A TGTGKTA +L+ Sbjct: 3 FTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIFTK 62 Query: 66 LLDFPRKKSGP---PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LL + K+G PR LIL PTREL +Q+ A+ L K+T +I I GGV YM + Sbjct: 63 LLS--QAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--RW 180 DIV+ T GRL+ Y+K++ + + VE L++DEADRM DMGF D+ I Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LLFSATL + + A + P +VS P +++ Q Y E K LL+ Sbjct: 181 KRQNLLFSATLN-TRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKE-KFPLLL 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL++ R+++FV + L + L + G++ Q KR + + +G + Sbjct: 239 GLLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLP 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +++ATDVA+RGI I VSHV N+D+P+ + Y+HRIGRTARAG +G AIS + + Sbjct: 299 IMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYI 358 Query: 361 GKVGRYIEEPIKARVIDE-----------LRPKTRAPSEKQTGKPSKKVLAKRAEKKKAK 409 + +I++ I ++ RP+T P + GKP + + +K + Sbjct: 359 EPIEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELPHGR-GGKPGDR--GRSGDKGRPG 415 Query: 410 EKEKPRVKKRHRDTKNIGKRRKPSG 434 +K +P + R + KP+G Sbjct: 416 DKGRPAGRSRSASGSD-----KPAG 435 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 148/406 (36%), Positives = 224/406 (55%), Gaps = 15/406 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + ++S+L +L +KG+ PT IQ AAIP + GRD+LG A TGTGKTAA+ LP ++ Sbjct: 53 FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 L D K ++L++TPTRELA QV++ + + + T+ I GG Y N Sbjct: 113 LAD---NKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALK 169 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+VV T GR++ +I++ F ++ L+LDEAD ML+MGF +DIE I + KQ Sbjct: 170 RKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQM 229 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ + I++ A++ L DP E+ +E + I Q + HK L +L Sbjct: 230 VLFSATMPNE-IRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQR-HHKLDALKRIL- 286 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + I+FVR + +A L G + L G++ Q +R + RL +G +++LVA Sbjct: 287 ELNNEGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V N+D P +TY HRIGRT RAGR G AI V + L Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFL---- 402 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKE 410 R +E + ++ + P + +EK+ +K++ E AKE Sbjct: 403 RNLENSTRTKIEEINIPSNKIINEKRM----EKLIENVNESSLAKE 444 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 143/387 (36%), Positives = 220/387 (56%), Gaps = 15/387 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + ++ + +A++D GF P+ IQ IP L G DV+G A TGTGKTAA+ +P L+ Sbjct: 4 FEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEK 63 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + + +S LILTPTRELA+QV+ ++L+K I I GG + + + Sbjct: 64 VTSDRQVQS-----LILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALKR 118 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +VV T GR+L ++ + R+V TLILDEAD MLDMGF +DIE I + +QT+ Sbjct: 119 GVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTM 178 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ I+ + + + +P +V+ + I+Q Y++ + ++K L ++ Sbjct: 179 LFSATMP-PPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLE-KNKLDSLCRVIDS 236 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 I+F R ++ V EL L+ G L G++ Q +R+ +K+ + + L+AT Sbjct: 237 ETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIAT 296 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD--HLLLGKV 363 DVAARGID+ +VSHV N+D+P+ ++Y+HRIGRT RAGR+G A++LV + HL Sbjct: 297 DVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHL----- 351 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQ 390 R IE IK + + P EKQ Sbjct: 352 -RSIEAEIKMTIPSQRIPSVEEVVEKQ 377 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 214/376 (56%), Gaps = 14/376 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+ TF E L + L A+ D G+ PT IQ AIP L+GRD++ +A TGTGKTAA+ LP Sbjct: 5 TIATFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + L + K GP ++I+TPTRELAMQ+S+ +AK T+ + T+ GGV+Y + Sbjct: 65 TMDKLP-YAGKGEGPV-MVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIK 122 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DI++AT GRLL +++ D V+ L+LDEADRMLDMGF + I T Sbjct: 123 KLRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSE 182 Query: 182 KQTLLFSATLEGDAIQD---FAERLLEDP--VEVSANPSTRERKKIHQWYYRADDLEHKT 236 +QTLLFSAT+ D QD F+ LL P +E+S T + + Y K Sbjct: 183 RQTLLFSATI--DRSQDKVMFS--LLNHPEIIEISHRGDTAD---LVDQYIIWTGRREKP 235 Query: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 ALL +++ R IVF + + L + GI + + Q +R A++R E Sbjct: 236 ALLNAFIREKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFRE 295 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G+ +V+VATDV ARGID+P+V +V N+D+P + Y+HRIGRT RAG G A+S V Sbjct: 296 GKTHVIVATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDT 355 Query: 357 HLLLGKVGRYIEEPIK 372 LL + ++I E I+ Sbjct: 356 KNLLRSIQKFIGEDIQ 371 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 145/372 (38%), Positives = 207/372 (55%), Gaps = 7/372 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L + LL+A+ D GF P+ IQA AIPP LDGRDV+G A TGTGKTAA+ +PAL Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPAL-D 91 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 L+D + + LIL PTRELA+QV++ ++LAK+ + I I GG + Sbjct: 92 LIDVQDRSV---QTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLK 148 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IV+ T GR++ +++ V+ +ILDEAD MLDMGF +DIE I E +QT Sbjct: 149 SGVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQT 208 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ +Q ++ +DPV V I Q Y+ + K ++ L+ Sbjct: 209 ILFSATMSKPIMQ-ITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKS-KAKVEVMCRLID 266 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF + +V E+ L+ G L G++ Q +RN + + G N+LVA Sbjct: 267 MYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVA 326 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+ DV V NFD+P + Y+HRIGRT RAG+ G A S V + ++ Sbjct: 327 TDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQ 386 Query: 365 RYIEEPIKARVI 376 Y + ++ VI Sbjct: 387 TYTKVKVEKGVI 398 >UniRef50_B8BT14 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BT14_THAPS Length = 495 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 155/395 (39%), Positives = 214/395 (54%), Gaps = 29/395 (7%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +FS+L L LL + GF PT IQA+ +P A+ GRDV SA TG+GKTAA+LLP Sbjct: 1 IDSFSQLGLSRPLLRGVASMGFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPV 60 Query: 63 LQHLL------------DFPRKKSG--PPRILILTPTRELAMQVSDHARELAKHTHLDIA 108 ++ +L + RK S R L+LTPTRELA Q +AK T L A Sbjct: 61 MERILQRGGGRTTMGGLNAKRKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAA 120 Query: 109 TITGGVA-YMNHAEVFSENQDIVVATTGRLLQYI-KEENFDCRAVETLILDEADRMLDMG 166 I GG M+ A D+VVAT GRLL +I + D +E LILDEADR+LD+G Sbjct: 121 LIVGGAKNVMSQAAELRSRPDVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLG 180 Query: 167 FAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERK------ 220 F ++ I +QTLLFSAT+ + D + L+ PV V A ++ Sbjct: 181 FQDEVHEIVKACPTERQTLLFSATMS-TKVDDLIKLSLKQPVRVQATEKGKKDNAPTGVE 239 Query: 221 ---KIHQWYYR---ADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGIN 274 ++ Q + R ++ ++ +L+ LL + +R IVF + H L GI Sbjct: 240 VAPRLEQEFVRIRAGNEGVNREGMLLALLTRTFTSRVIVFFDTKSAAHRLMIVCGLCGIK 299 Query: 275 NCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH 334 L G + Q +R EA++ EG V+VL+ATD+AARG+DIP V V NF+MP DTY+H Sbjct: 300 CTELHGNLTQVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVH 359 Query: 335 RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 369 RIGRTARAGR G + +L+ L+ +V + EE Sbjct: 360 RIGRTARAGRGGNSCTLIGEGRRYLMKEVIKDAEE 394 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 212/372 (56%), Gaps = 14/372 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L + S++EA++ GF T IQ IP +G+D++G A TGTGKT A+ +P ++ Sbjct: 4 FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPCVEQ 63 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 ++ + P+ L+LTPTRELA+QV++ +L + + I GG + Sbjct: 64 VV----VEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITALKK 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 I+VAT GR + +++ + ++ ++LDEAD ML MGF +DIE I E +QTL Sbjct: 120 RPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTL 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ ++ A+R + PV ++ + I Q Y + E K L +LL Sbjct: 180 LFSATMP-PKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKE-KFDTLCNLLDM 237 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +I+F R + RV EL L G L G+M Q +R++ I++ G ++V+VAT Sbjct: 238 ETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVAT 297 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV--EAHDHLLLGKV 363 DVAARG+D+ DVSHV NFD+P+ ++Y+HRIGRT RAG+KG + S V + DHL Sbjct: 298 DVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHL----- 352 Query: 364 GRYIEEPIKARV 375 RYIEE + ++ Sbjct: 353 -RYIEESTRQKM 363 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/356 (40%), Positives = 204/356 (57%), Gaps = 3/356 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L L A+++ G+T PT IQ AIP GRDVLG A TGTGKTA++ LP + Sbjct: 2 TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI- 60 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L + K+ PR LIL PTRELA QVS++ K+ L +A + GG + +V Sbjct: 61 DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVLD 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+++AT GRL+ + + R V+ L++DEADRMLDMGF D+E I +QT Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L FSAT++ + I+ A+ L +P EV P+ + + + Q E + AL LL+ Sbjct: 181 LFFSATMDKE-IRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALR-QLLR 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + T + +F ++ V L L G + L G+M Q R E +++ V ++V Sbjct: 239 RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVC 298 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +DVAARGID+ +VSHVFNFD+P + Y+HRIGRT RAGR G A +L D L Sbjct: 299 SDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYL 354 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 214/375 (57%), Gaps = 14/375 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF++L L E L A+ D G++ PT +Q AIP L+GRD++ +A TGTGKTAA+ LP Sbjct: 23 IATFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPT 82 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L L R P ++I+TPTRELA Q++D +A+ T+ + GGV Y + Sbjct: 83 LDQLR--YRADDEGPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKK 140 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 DI++AT GRLL +++ D VE L+LDEADRMLDMGF + I + Sbjct: 141 LRAGADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAER 200 Query: 183 QTLLFSATLEGDAIQD---FAERLLEDP--VEVSANPSTRERKKIHQWYYRADDLEHKTA 237 QTLLFSAT+ D QD F+ LL+DP +E++ + I Q+ + D K A Sbjct: 201 QTLLFSATI--DRSQDKVMFS--LLKDPEIIEIAHRGDVAD--LIDQYVIKTD-RRLKPA 253 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL +++ R IVF R + LR+ GI + + Q +R A+ EG Sbjct: 254 LLNSFVRERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREG 313 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + +VLVATDV +RGID+P+V +V N+D+P + Y+HRIGRT RAG +G A+S V Sbjct: 314 KTHVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTR 373 Query: 358 LLLGKVGRYIEEPIK 372 LL + ++I++ I+ Sbjct: 374 NLLKSIQKFIDQTIE 388 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 12/356 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M ++++ L + AL+ + +P+ IQAA IP AL+GRDVLG A TGTGKTAA+ + Sbjct: 1 MADINYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH---LDIATITGGVAYM 117 P ++ L P ++ P+ LILTPTRELA+QV D E+AK TH +++ + GG Sbjct: 61 PIIERLEHGPNSRN--PQALILTPTRELAVQVRD---EIAKLTHGQRINVVAVYGGKPLR 115 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 + E IVV T GR++ + + T++LDEADRMLD+GF DIE I Sbjct: 116 SQMEKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRR 175 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 +QTLL SAT+ I+ A+R + +P +V +P+ + I Q Y+ D K Sbjct: 176 CPEERQTLLLSATVP-PTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDH-SKKFD 233 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWL-REAGINNCYLEGEMVQGKRNEAIKRLTE 296 +LV LLK+ + ++IVF R + + L ++ + +C + G+M QG RN A+ Sbjct: 234 MLVELLKREQPQKAIVFCRTKRGTERITQRLSKKTKLVHC-IHGDMQQGARNRALSDFKA 292 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 + VLVATDV RGIDI DVSH+ N+D+P D Y+HR+GRT R G++G A + V Sbjct: 293 SKFRVLVATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFV 348 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 203/348 (58%), Gaps = 6/348 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T FS L L ES+++AL + GF +PT IQ +IP LDGRD+L A TGTGKTAA+ LP Sbjct: 3 TAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLP-- 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+D + + L+L PTRELA+QV + +KH+ + + I GG Sbjct: 61 --LVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 IVV T GR+L ++ + D A+ TL+LDEAD+MLDMGF ++++ I +Q Sbjct: 119 RAGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 + FSATL +I+ A R L P+ ++ R+ I Q Y + +++ L +L Sbjct: 179 LVFFSATLPA-SIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVN-FKNRAQALTRVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +++F R ++ ELA L++ G L G++ Q R + R ++NV+V Sbjct: 237 AAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 351 ATDVAARG+DI D+SHV N+DMP+ G++Y+HRIGRT RAGR G AIS Sbjct: 297 ATDVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISF 344 >UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EYB1_DICNV Length = 432 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 213/377 (56%), Gaps = 6/377 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++ + +LLEAL+D FT+ T IQA +P L G DV+G A TGTGKTAA+LL + + Sbjct: 11 FTDFPIHSALLEALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHY 70 Query: 66 LLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ P K+ P ++L PTRELA+Q+ L +T L I GG + + ++F Sbjct: 71 LMTNPVHPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQ 130 Query: 125 E-NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--RWR 181 N D+++ T GR++ K++ F + +E +LDEADRM D+GF D+ ++ + + Sbjct: 131 ACNVDVIIGTPGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAYE 190 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 + LLFSAT+ +Q+ A P V+ I + Y E KT LL+ Sbjct: 191 RLNLLFSATMP-QKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHE-KTPLLLG 248 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + RS++F+ + + L+ L G +N L G++ Q KR + I+ EG VN+ Sbjct: 249 LFARERPERSMIFLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVNI 308 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 +VATDVAARGI I ++HVFN+D+P+ + Y+HRIGRTARAG GTAIS L Sbjct: 309 VVATDVAARGIHIDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAISFACEEYVYSLP 368 Query: 362 KVGRYIEEPIKARVIDE 378 ++ ++ E I + I+E Sbjct: 369 EIEHFLGEKIPVKPIEE 385 >UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S6M9_OSTLU Length = 755 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 218/374 (58%), Gaps = 5/374 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L L A + G+ +PT IQAA IP A+ GRDV G A TG+GKTAA++LP L+ Sbjct: 150 FDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLER 209 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L + + +L+L PTRELA+QV LA+ T + + GG++ A Sbjct: 210 MLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRT 269 Query: 126 NQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +IVVAT GR++ +++ +F + TLILDEADR+L+MGF ++I+ I + ++QT Sbjct: 270 RPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQT 329 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHL 242 LLFSATL ++ A +++P +SA+ +T +R + + K A L+ + Sbjct: 330 LLFSATLTA-GVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAI 388 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + + +I+F + ++ H L + + I L G+M Q +R A+ G V L Sbjct: 389 VSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHL 448 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+DIP V V +FD P++ +YLHR+GRTARAG+KGTA++ +E D L+ Sbjct: 449 IATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKT 508 Query: 363 VGRYIEEPIKARVI 376 + + +KAR++ Sbjct: 509 IAKRGAN-LKARIV 521 >UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=Actinomycetales RepID=A0JYP4_ARTS2 Length = 585 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 219/381 (57%), Gaps = 15/381 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++ + ++E+L D G T P IQA +P AL G D++G A TGTGKT + +PALQ Sbjct: 38 SFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPALQ 97 Query: 65 HLL--DFPRKKS----GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 ++ D P G P+ L++ PTRELA+QV+ A+ + IATI GG AY Sbjct: 98 RVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEP 157 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 + + +IVV T GRL+ K+++ + V+ +ILDEAD MLD+GF D+E + T Sbjct: 158 QVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGT 217 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEV-SANPSTR--ERKKIHQWYYRADDLEHK 235 +QTLLFSAT+ G I A R + P + +A+P ++ I Q YRA ++ K Sbjct: 218 PAVRQTLLFSATMPGPVIA-MARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMD-K 275 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 ++ +L+ R+I+F + + ++A L + G + G++ QG R +A++ Sbjct: 276 IEVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFR 335 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 +V+VLVATDVAARGID+ DV+HV N+ YLHR+GRT RAG KGTA++ V+ Sbjct: 336 NNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWD 395 Query: 356 DH----LLLGKVGRYIEEPIK 372 D L+ +G + EP++ Sbjct: 396 DMPRWGLINKALGLSVPEPVE 416 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 153/404 (37%), Positives = 219/404 (54%), Gaps = 11/404 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 + FSE+ L + +L+AL D G+ PT IQA IP L GRD+LG A TGTGKTAA+ LP L Sbjct: 19 SGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLL 78 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 + D KK P++L+L PTRELA+QV++ + A ++ + GG AY Sbjct: 79 SRI-DIKLKK---PQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQ 134 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++V T GRL+ +K D + TL++DEAD ML MGF D+E I +T + Sbjct: 135 LKRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGR 194 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LFSAT+ I+ A + L DP +V T I Q ++ HK L + Sbjct: 195 QVALFSATMPA-PIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKG-THKLDALTRI 252 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ IVFVR + ELA L G L G++ Q R I R +G++++L Sbjct: 253 LEAETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDIL 312 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ VSHV N+D+P ++Y+HRIGRT RAGR G AI V + +L Sbjct: 313 VATDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWML-- 370 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 + IE+ + ++ P T A ++K+ ++ + A K+ Sbjct: 371 --KVIEKTTRQQIEMMKLPSTEAINDKRIADFNQSITDTLASKE 412 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 211/384 (54%), Gaps = 6/384 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF + L +L A+ ++G+T PT IQA AIP L GRDV+G+A TGTGKTA++ LP +Q Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161 Query: 65 HLLDFPRKKSGPPR----ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LL + P R LILTPTRELA QV+ + AKHT L A + GGV Sbjct: 162 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 221 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I++AT GRLL +++++ + V+ L+LDEADRMLDMGF D++ I Sbjct: 222 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 281 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLFSAT + I+ A L +P + S + Q Y + + K A +V Sbjct: 282 ERQTLLFSATFSPE-IKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGD-KQAAVV 339 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L++ + IVF + LA + GI + G+ Q +R +A+ G + Sbjct: 340 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATDVAARG+DI ++ V NFD+P + + Y+HRIGRT RAG G A+SL ++ L Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459 Query: 361 GKVGRYIEEPIKARVIDELRPKTR 384 + + I+ + ++ P+ R Sbjct: 460 ADIEKLIKRTLSLETLELDLPRHR 483 >UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Tax=Dictyostelium discoideum RepID=DDX27_DICDI Length = 783 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 217/378 (57%), Gaps = 6/378 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL L LL+A+Q GF++PT IQA AIP AL+G+D+L SA TG+GKTAA+LLP L+ Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL F + R+LIL PTRELA+Q LA+ +++ I GG++ Sbjct: 251 RLL-FRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELR 309 Query: 125 ENQDIVVATTGRLLQYI-KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++ D+V+AT GRL+ ++ +E LILDEADR+LDMGF +I I +Q Sbjct: 310 KSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQ 369 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA--DDLEHKTALLVH 241 T+LFSATL D ++ A+ L+ P+ V + + + Q + + L + A+L+ Sbjct: 370 TMLFSATL-NDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLS 428 Query: 242 LLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + +I+F R ++ VH L + + L G + Q +R +++++ +G+VN Sbjct: 429 LCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVN 488 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+A+DVA+RG+DI V V N++MP + Y+HR+GRTARAG G + S + +D LL Sbjct: 489 YLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLL 548 Query: 361 GKVGRYIEEPIKARVIDE 378 + K+R + + Sbjct: 549 KDIVTKARNKAKSRSVSQ 566 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 207/370 (55%), Gaps = 11/370 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E+LL+ L DKG++ P+ IQ AA P + GRD++G A TGTGKTAA+ LP L+ Sbjct: 73 FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132 Query: 66 LLDFPRKKSG--PPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMNHAEV 122 L +SG P++L+L PTRELAMQV+D + A H HL + + GG + + Sbjct: 133 L------ESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQIST 186 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+VV T GR++ ++++ D + +L+LDEAD ML MGF D+E I + + Sbjct: 187 LRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKER 246 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q +LFSAT+ + I+ ++R L DP EV+ ++ K I Q + HK L + Sbjct: 247 QVVLFSATMPPE-IRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVP-MSHKLEALQRV 304 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L I+F R + +A L AG L G++ Q +R ++RL G V+VL Sbjct: 305 LDACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVL 364 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ + V N+DMP + Y+HRIGRT RAGR G A+ + + + Sbjct: 365 VATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRN 424 Query: 363 VGRYIEEPIK 372 + R +PI+ Sbjct: 425 LERATGQPIE 434 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 221/388 (56%), Gaps = 19/388 (4%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 + + F EL + ++ +++L+ GF PT IQ +IP AL G D+LG A TGTGKT A+ + Sbjct: 10 IILQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGI 69 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ ++ K G + LIL PTRELAMQV++ RE ++ + + T+ GG+ Sbjct: 70 PLIEKVVG----KQGV-QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 124 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET-R 179 + + IVV T GR++ ++ + TLILDEAD M++MGF D+ I + Sbjct: 125 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 184 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++QT+LFSAT+ AIQ ++ ++ P + + +I ++Y +LE Sbjct: 185 VQRQTMLFSATMP-KAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT 243 Query: 240 VHL-LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L + QPE +IVF R + RV EL + L G L G++ Q KR E +K+ + Sbjct: 244 NFLDVHQPEL--AIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 301 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE--AHD 356 +N+LVATDVAARG+DI VSHV+NFD+P+ ++Y HRIGRT RAG++G A++ V D Sbjct: 302 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 361 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTR 384 ++ R IE+ R + LRP R Sbjct: 362 YI------RQIEDA-NGRKMSALRPPHR 382 >UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family n=54 Tax=cellular organisms RepID=B2S5R2_BRUA1 Length = 531 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 197/349 (56%), Gaps = 3/349 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L + LL+ ++ G T P IQ AIP L+G+D+LG A TG+GKTAA+ LP LQ Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 66 LLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 ++ +++ R LIL PTRELA+Q+ R ++K H+ A + GGV+ ++ + + Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+++AT GRL +++ D L+LDEADRMLDMGF D++ IA T +QT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ + I AERLL DPV V P +I Q + E K LL +L Sbjct: 269 ALFSATMPKE-IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKE-KRRLLSAMLT 326 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + IVF R + + L + + G Q R A+ +G + +LVA Sbjct: 327 DADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVA 386 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 TD+AARGID+P +SHV N+D+P +TY+HRIGRT R G G +I+L + Sbjct: 387 TDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYD 435 >UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter oxydans RepID=Q5FNK0_GLUOX Length = 393 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 16/368 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L LL L G RP+ IQ AIPP L+G+DVL + TG+GKTAA++LP LQ Sbjct: 22 FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81 Query: 66 LLDFPRKKSGP---PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L ++GP PR LIL PTRELA Q + R+L + L I GG + + Sbjct: 82 L-----TEAGPAPGPRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQS 136 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE-TRWR 181 S+ DI+VAT GRLL + + + + L+LDEADR+LD F+ + + Sbjct: 137 VSDGVDIIVATHGRLLDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTALTPYFPDQP 196 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ--WYYRADDLEHKTALL 239 QT+ SATL + + D A+R+ +PV V + K I Q + DD K + Sbjct: 197 PQTVFCSATLP-EPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDD---KPETV 252 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LLK E RSIVF R + V LA LR + L G+ QG RN+A+ +GR+ Sbjct: 253 ARLLKHFEG-RSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRI 311 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLV TD+A+RG+DIPDV V N DMP + + Y+HRIGRTARAGRKG A SL+ + Sbjct: 312 PVLVTTDIASRGLDIPDVDLVINMDMPETPEAYVHRIGRTARAGRKGVAFSLINIDERTF 371 Query: 360 LGKVGRYI 367 L V ++I Sbjct: 372 LRDVEKHI 379 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 206/383 (53%), Gaps = 6/383 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + L + ++ G+ PT IQ AIP + G+DVLG A TGTGKTAA+ LP L Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+ +++ G R L+L PTRELA Q++D + K T L T+ GGV + E Sbjct: 63 LV---QEERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLKE 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +IVVA GRLL +I + D VE L+LDEAD+M DMGF D+ I ++Q L Sbjct: 120 GAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNL 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 +FSAT+ D I+ A +L +PV V + + H Y L KT LL +LK Sbjct: 180 MFSATMPDD-IRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHL--KTPLLFEMLKH 236 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + ++F + + R + L +AG L+G + Q +R A+ +G ++VAT Sbjct: 237 TDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVAT 296 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARGID+ +SHV N+D+P + + Y HRIGRT RA + G A ++V + D + + + Sbjct: 297 DIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEK 356 Query: 366 YIEEPIKARVIDELRPKTRAPSE 388 + I+ R I+ AP + Sbjct: 357 VLGTKIERRRIEGFDYAVPAPQK 379 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/355 (39%), Positives = 208/355 (58%), Gaps = 7/355 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+ ++L + ++ AL+ G+ PT IQA IP AL+G DV+G A TGTGKTA++++P L+ Sbjct: 13 TFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILE 72 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LLD R + P+ LIL PTRELA+QV D +L++ ++ A + GG + + Sbjct: 73 -LLDIERG-APTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLK 130 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +VV T GR+L +I D +E ++LDEADRMLD+GF DIE I +QT Sbjct: 131 KGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQT 190 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LL SAT+ I A+R + +P ++ +P+ I Q Y+ + + K LL+ LL Sbjct: 191 LLLSATVP-PPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEH-DRKFDLLMKLLL 248 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + E ++IVF R + ++ L + N + G++ QG+R+ + +G V LVA Sbjct: 249 REEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVA 308 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV---EAHD 356 TDV RGID+ VSH+ NFD+P D Y+HR+GRT R GR+G A + V E H+ Sbjct: 309 TDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHE 363 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/431 (35%), Positives = 233/431 (54%), Gaps = 34/431 (7%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +L L + L++L + G+++PT IQ AIP + G+D++ A TGTGKTAA+ +P ++ Sbjct: 7 TFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIVE 66 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + P++K + LIL PTRELA+QV+ +EL K+ + + GG + + Sbjct: 67 KV--NPKQKK--VQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLK 122 Query: 125 ENQDIVVATT-GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+VV T GR+ ++ + V+ +LDEADRML+MGF DIE I +Q Sbjct: 123 KGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVE-VSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 LLFSAT+ + I D AE L + E + P +KI Q YR + K L + Sbjct: 183 NLLFSATMPKE-ILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNP-RDKFKKLTEV 240 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L Q EA + I+F + + ELA L E G N + G+ Q KR + G++ +L Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V V N+ +PR ++Y+HRIGRT RAGR+GTAIS++ Sbjct: 301 VATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIM---------- 350 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 P + + + ++ KT+A E + A++KK +K + ++ R Sbjct: 351 ------TPSEDKQLQNIQKKTKANIE----------VINEAQEKKLSSAQKDKSSQKERS 394 Query: 423 TKNIGKRRKPS 433 ++N +RR+ S Sbjct: 395 SRNQTRRRQRS 405 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/390 (37%), Positives = 215/390 (55%), Gaps = 13/390 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+TTF++L L E++L A+ + GF PT IQ AIP L+GRD++G A TGTGKTAA+ LP Sbjct: 3 TMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L H+ + ++L PTRELAMQ + A H + + T+ GG +Y Sbjct: 63 MLAHI----DPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQI 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET-- 178 + +VV T GR++ I++ V L+LDEAD ML MGFA+D+E IA Sbjct: 119 KGLKSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPE 178 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++ T LFSAT+ D IQ A++ L DPV + + + IHQ Y +HK Sbjct: 179 SGKRITALFSATMP-DFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVP-FKHKLGA 236 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L +L + +IVFVR R E+A + G + G++ Q +R + RL +G Sbjct: 237 LGRVLATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGS 296 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++VLVATDVAARG+D+ + V NFD+PR + Y+HR+GRT RAGR G +++ + Sbjct: 297 LDVLVATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQF 356 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSE 388 L R IE+ ++ + + P R SE Sbjct: 357 RL----RQIEKLTGTKMEEIVIPSPREVSE 382 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 213/374 (56%), Gaps = 10/374 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++ L + +L+A+ + GF P+ IQ AIP L+ D++G A TGTGKTA++ +P Sbjct: 2 IENFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPI 61 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + K S + ++L PTREL++QV++ +LAK+ + + I GG Sbjct: 62 VEKV----NKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRS 117 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++V T GR++ +IK + ++T +LDEAD M DMGF +DIE I G + + Sbjct: 118 LKMGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYER 177 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH--KTALLV 240 QT FSAT++ + + DFA R +P + P K+ Q+Y+ L+H K +L Sbjct: 178 QTTFFSATMDHE-MMDFAARYQSEPRLIKVVPKELTVPKVTQYYFA---LKHNMKLEILS 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L ++VF ++ V +L L+ G L G++ Q +R+ + + ++ Sbjct: 234 RILDVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTID 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGID+ DV V N+DMP+ + Y+HRIGRTARAGR+GTAIS V + L Sbjct: 294 ILVATDVAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTL 353 Query: 361 GKVGRYIEEPIKAR 374 ++ +Y + I+ R Sbjct: 354 SQIQKYTKTKIEKR 367 >UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=Gammaproteobacteria RepID=A8H2J8_SHEPA Length = 442 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 161/416 (38%), Positives = 227/416 (54%), Gaps = 14/416 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L LLE L+ +T+PTAIQ+ IP LDG+DVLG A TG+GKTAA+ LP +Q Sbjct: 25 FTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQK 84 Query: 66 LLD-FPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATIT--GGVAYMNHAE 121 L PRK G L+L PTRELA QV+D ++ ++ T+ GGV+ + Sbjct: 85 LAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQMQ 144 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DIVVAT GRL+ I TL+LDEADRML +GF +++ + + Sbjct: 145 SLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPKT 204 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 KQTLLFSAT + +++ + LL +PVEV S E + Q + KTALL Sbjct: 205 KQTLLFSATFP-EEVRELTDSLLNNPVEVQLQSS--EESTLVQRVITVNR-NRKTALLAQ 260 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+K + + ++F + + LA L AGI + QG RN ++ G ++V Sbjct: 261 LIKDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISV 320 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATD+AARGIDI + V NF++PRS Y+HRIGR+ RAG G A+SL+ +HD Sbjct: 321 LIATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLI-SHDEY--- 376 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV--LAKRAEKKKAKEKEKPR 415 + + IE+ K R+ E P A E PS++V +AK A K + P+ Sbjct: 377 QHFKLIEKKNKLRLEREQIPGFEADLEAPEDCPSREVKPMAKPAGTGKKHRNKLPK 432 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 197/354 (55%), Gaps = 7/354 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+EL L ++L L+ G+ P+ IQA IP L+GRDVLG A TGTGKTAA+ LP L Sbjct: 10 TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 L D R++ P++L+L PTRELA QV+ + + L++ ++ GG Y Sbjct: 70 RL-DLQRRE---PQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGL 125 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++V T GR++ ++ + + L+LDEAD ML MGF D++ + +T Q Sbjct: 126 RRGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQ 185 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 + FSATL D I L DP+ ++ T+ + I Q R + K L LL Sbjct: 186 RVFFSATLP-DEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEG-GAKLEALSRLL 243 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +IVFVR R L L G+N L G++ Q R ++RL G+V+VL+ Sbjct: 244 EVEPVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLI 303 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 ATDVAARG+D+P ++HVFN+D+P+ + Y HRIGRT RAGR G AI+ + Sbjct: 304 ATDVAARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQ 357 >UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q93382_CAEEL Length = 811 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 5/369 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V +F+ D+ L+EA++ + +PT IQA AIP AL GRDVLG A TG+GKTAAYL PA Sbjct: 264 VCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPA 323 Query: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLD-IATITGGVAYMNHA 120 + H++D P K+G P +I+ PTRELA+QV A++ K +++ I GG + Sbjct: 324 IVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSN 383 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E+ +E ++VV T GR++ +K + L+ DEADRM DMGF ++ I+ R Sbjct: 384 ELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRP 443 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q L+FSAT + ++ A L DPV + I Q + + + K L+ Sbjct: 444 DRQCLMFSATFK-QKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLI 502 Query: 241 -HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L++ + ++FV K+ ++A L+ + L G+M+Q +RNE + + + + Sbjct: 503 RNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KS 561 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVAARG+DI ++ V NFDM R DT++HRIGRT RAG KGTA +LV D + Sbjct: 562 QILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEM 621 Query: 360 LGKVGRYIE 368 +G + + +E Sbjct: 622 VGHLVKNLE 630 >UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammaproteobacteria RepID=RHLB_SHEAM Length = 439 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 219/382 (57%), Gaps = 7/382 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T F++L L + + +AL + GF T IQA ++P L+ +D+ G A TGTGKT A+L+ Sbjct: 6 LTQQKFADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLV 65 Query: 61 PALQHLLDFP---RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 HLL P ++ PR +++ PTRELA+Q++ A L+KH+ L + + GG Y Sbjct: 66 ATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYE 125 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +V + D+++ TTGR++ Y+++ + A++ ++LDEADRM D+GF +DI + Sbjct: 126 AQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNR 185 Query: 178 TRWRKQ--TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 K+ +LFSATL +Q+ A + DPV+V P + + I + + +E K Sbjct: 186 MPGAKERLNMLFSATLSM-KVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPS-MEDK 243 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL L+++ ++IVF + + L L G L G++ Q KR + +++ T Sbjct: 244 LKLLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFT 303 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 + +++LVATDVAARG+ I DVSHV+N+D+P + Y+HRIGRT RAG+KG ++S Sbjct: 304 QSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE 363 Query: 356 DHLLLGKVGRYIEEPIKARVID 377 L L + YI+ I D Sbjct: 364 YALNLPAIEDYIKHSIPVTSYD 385 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/376 (39%), Positives = 212/376 (56%), Gaps = 10/376 (2%) Query: 1 MTVTT---FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAA 57 MT TT F +L L +L+A+ + G+ PT IQ+ AIP L G+DVLG A TGTGKTAA Sbjct: 1 MTDTTQVRFDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAA 60 Query: 58 YLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAY 116 + LP L L D K+ P++L++ PTRELA+QV++ + AKH L +AT+ GG +Y Sbjct: 61 FGLPLLSRL-DADLKQ---PQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSY 116 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 + IVV T GR++ +IK+ ++ +LDEAD ML+MGF +DIE I Sbjct: 117 TPQLRDLARGPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILN 176 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKT 236 + + Q FSAT+ I+ + L DP+ V ++ KI Q + + KT Sbjct: 177 QIPDQTQMAFFSATMPA-PIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRI-GKT 234 Query: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L + + + IVFVR R LA L G L G+M Q R +++L Sbjct: 235 VGLERIAEVVDYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKN 294 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 GR+N+L+ATDV ARG+D+P ++HV N+D+P ++Y+HRIGRT RAGR+G AI + Sbjct: 295 GRINILIATDVVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHRE 354 Query: 357 HLLLGKVGRYIEEPIK 372 L ++ R E I+ Sbjct: 355 VRSLSRLERITEGKIE 370 >UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836_XENLA Length = 758 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 216/375 (57%), Gaps = 5/375 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF ++ L LL+A+ FT+PT IQ A IP L G+D+ A TGTGKTAA++LP L+ Sbjct: 182 TFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLE 241 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ PR+ + R+L+L PTREL +QV R+LA+ T + GG+ Sbjct: 242 RLIYKPRE-APVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALR 300 Query: 125 ENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+++AT GRL+ ++ +F +E LILDEADRMLD F + ++ I ++Q Sbjct: 301 SGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQ 360 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA--DDLEHKTALLVH 241 TLLFSAT+ + ++D A L +PV + N +T + Q + R + + A+ Sbjct: 361 TLLFSATM-SEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACA 419 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL + ++F + +++ H + L G+ L G + Q +R EA++R + ++++ Sbjct: 420 LLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 479 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI V V N MP + Y+HR+GRTARAG+ G ++SLV + +L Sbjct: 480 LVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLK 539 Query: 362 KVGRYIEEPIKARVI 376 ++ + + P+KARVI Sbjct: 540 EIVKKAQAPVKARVI 554 >UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 Tax=cellular organisms RepID=DDX27_HUMAN Length = 796 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 236/412 (57%), Gaps = 7/412 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F ++ L LL+A+ GF +PT IQ A IP L G+D+ A TGTGKTAA+ LP L+ Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L+ PR+ + R+L+L PTREL +QV R+LA+ ++ GG+ + Sbjct: 279 RLIYKPRQ-APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337 Query: 125 ENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI++AT GRL+ ++ +F ++E LILDEADRMLD F + ++ I +Q Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA--DDLEHKTALLVH 241 T+LFSAT+ D ++D A L++PV + N +T + Q + R + + A++ Sbjct: 398 TMLFSATMT-DEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 456 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL + ++F + +++ H + L G+ L G + Q +R EA++R + ++++ Sbjct: 457 LLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 516 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI V V NF MP + Y+HR+GRTARAGR G ++SLV + +L Sbjct: 517 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLK 576 Query: 362 KVGRYIEEPIKARVI-DELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++ + + P+KAR++ ++ K R EK K VL AE+K+ ++ E Sbjct: 577 EIVKAAKAPVKARILPQDVILKFRDKIEKME-KDVYAVLQLEAEEKEMQQSE 627 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 212/371 (57%), Gaps = 7/371 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ TF +L L +LEA++ G+ P+ IQA AIP L G ++LG+A TGTGKTAA+ LP Sbjct: 122 SLVTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLP 181 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHA 120 L + R+ S +L+LTPTRELA+QVSD ++ A K ++ + + GG Sbjct: 182 LLSRINFNGRETS----MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQL 237 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVVAT GRL+ +IK + AV+ ++LDEAD MLDMGF +D+E I E Sbjct: 238 RALKRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPA 297 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q LFSAT+ D+++ ++ L + E T + I Q Y + EHK L Sbjct: 298 DAQRALFSATMP-DSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKN-EHKIEALA 355 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ E ++FVR ++ E+A L G N L G++ Q R I RL G+++ Sbjct: 356 RVLEGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLD 415 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 ++VATDVAARGID+ +S V N+D+P ++Y+HRIGRT RAGR G AI + + +L Sbjct: 416 IVVATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRML 475 Query: 361 GKVGRYIEEPI 371 + + +PI Sbjct: 476 KTIEKATRQPI 486 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 219/393 (55%), Gaps = 19/393 (4%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F +L L ++LL+A+ GFT PT IQ AAIP L GRD++G A TGTGKTAA+ LP L Sbjct: 21 SFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLA 80 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDH-ARELAKHTHLDIATITGGVAYMNHAEVF 123 + + + L+LTPTRELA+QVSD A + + + I GG +++ Sbjct: 81 AV----DPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGL 136 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +VV T GR++ ++ + D A+ L+LDEAD ML MGFA+D++ I +T KQ Sbjct: 137 ERGAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQ 196 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWY----YRADDLEHKTALL 239 LFSAT+ I+ AE L +P E++ + Q Y YR +K L Sbjct: 197 VALFSATMP-PPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYR-----NKAEAL 250 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L +A +IVFVR RE E+ L GIN + G++ Q +R ++RL G + Sbjct: 251 SRVLATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGAL 310 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATDVAARG+D+ + V NFD+PR +TY+HRIGRT RAGR G A++ + + Sbjct: 311 DVLVATDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPR 370 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTG 392 L R IE +R+++ P + +TG Sbjct: 371 L----RTIERVTGSRLVEATIPTNAEVAAHRTG 399 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/348 (40%), Positives = 201/348 (57%), Gaps = 7/348 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L E+LL A+ GFT T IQA IPP L G+DVLG A TGTGKTAA+ LPAL Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 + D KK P++++L PTRELAMQV++ K L +AT+ GG +Y + Sbjct: 77 I-DTSIKK---PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLE 132 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GRL+ +++ ++ + +LDEAD ML+MGF +DI+ I Q Sbjct: 133 RGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQM 192 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ A R L+DP + + + I Q+ ++ + TAL + + Sbjct: 193 CLFSATMP-PAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTAL-ERIAE 250 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 E I+FVR R ++A L AG L G++ Q +R I ++ G+ ++LVA Sbjct: 251 VVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVA 310 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 TDV ARG+DIP +S V N+D+P + Y+HRIGRT RAGR+G +I+ V Sbjct: 311 TDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFV 358 >UniRef50_Q5KIK3 ATP-dependent RNA helicase DRS1 n=2 Tax=Agaricomycotina RepID=DRS1_CRYNE Length = 808 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 218/378 (57%), Gaps = 6/378 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 ++F+ + L LL AL FT PT IQA AIP AL GRD+LGSA TG+GKTAA+++P L Sbjct: 222 SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL 281 Query: 64 QHLLDFPRKKSGPP-RILILTPTRELAMQVSDHARELAKHTHLDI--ATITGGVAYMNHA 120 + L R K G R+L+L PTRELA+Q + LA+ LD+ A + GG++ A Sbjct: 282 ERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQA 341 Query: 121 EVFSENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DI++AT GRL+ ++ +F A++ L++DEADRML+ GF ++E I Sbjct: 342 HTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACP 401 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT+ D++ + + L+ P+ V +P + + Q + R + ++ L Sbjct: 402 RSRQTMLFSATMT-DSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSL 460 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + L K+ + I+F R + H++ G+ L G + Q +R +A+ G V Sbjct: 461 LALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGTV 520 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV-EAHDHL 358 + L+ATD+A+RG+DI V V N+DMP Y HR+GRTARAGRKG ++SLV EA + Sbjct: 521 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKM 580 Query: 359 LLGKVGRYIEEPIKARVI 376 L + + + ++ R+I Sbjct: 581 LKAAIKQAEADQVRHRII 598 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 141/363 (38%), Positives = 208/363 (57%), Gaps = 14/363 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++ + + +++AL D G T P IQA +P AL D++G A TGTGKT + +P L Sbjct: 69 SFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLLN 128 Query: 65 HLLDFPRKKS-------GPPRILILTPTRELAMQVS-DHARELAKHTHLDIATITGGVAY 116 ++ P + G P+ +++ PTRELA+QV+ D A A L + I GG AY Sbjct: 129 RVV-APGEPGWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAY 187 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 E ++VV T GR++ + + + + ET++LDEAD MLD+GF D+E I Sbjct: 188 EPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILS 247 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRER---KKIHQWYYRADDLE 233 ++ T+LFSAT+ G A+ A R + P + A E K I Q YRA L+ Sbjct: 248 RLPAKRHTMLFSATMPG-AVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALD 306 Query: 234 HKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 293 K +L LL+ RSIVF R + ++++ LR+ G + G++ QG R +A++ Sbjct: 307 -KIEVLARLLQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRA 365 Query: 294 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 L G+++VLVATDVAARGID+ DV+HV N+ P TYLHR+GRT RAG KGTA++ V+ Sbjct: 366 LRHGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVD 425 Query: 354 AHD 356 D Sbjct: 426 WDD 428 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/354 (41%), Positives = 204/354 (57%), Gaps = 10/354 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L L L+ AL D+G+ PT IQAAAIP AL G D+L +A TGTGKTAA++LP+L+ Sbjct: 28 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87 Query: 66 LLDFPRKKSGPP----RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L + + P R+L+LTPTRELA Q+ + + K+ L + GGV Sbjct: 88 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 147 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +IVVAT GRLL ++K++N + VE ++LDEADRMLDMGF DI I + Sbjct: 148 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 207 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDP--VEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSAT I+ A+ + P VEV+A +T + Q D L+ K +LL Sbjct: 208 RQTLLFSATF-SPPIRKLAQDFMHTPEMVEVAAQNTT--NANVEQHIIAVDALK-KRSLL 263 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L+ + IVF + ++ V ++ L I + G+ Q R E + EG + Sbjct: 264 ERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTL 323 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 VLVATDVAARG+DI ++ V N+++P + Y+HRIGRT RAG G AISL++ Sbjct: 324 RVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMD 377 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/355 (38%), Positives = 211/355 (59%), Gaps = 12/355 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ T F ++ L L++A+ D +T+ T IQA AIP + G DV+G + TGTGKTAA+ + Sbjct: 1 MSETKFEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSG--PPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYM 117 PA++ R +SG P++L+L+PTRELAMQ++D R+ AK+ + +A + GG A M Sbjct: 61 PAVE------RIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGG-APM 113 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 + +IV+ T GR++ +++ + T++LDEAD ML+MGF DI+ I E Sbjct: 114 DAQIRALRAANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAE 173 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 T +QT+LFSAT+ AI ++ L DP V R + Q++YR A Sbjct: 174 TPDTRQTVLFSATMP-PAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDA 232 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L + LL+ + R++VF + V L +L + G + G+M Q R + ++ +G Sbjct: 233 LNL-LLQYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDG 291 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 + +LVATDVAARGID+ ++ VFNFD+P+ + Y+HRIGRT RAGR G + +LV Sbjct: 292 KTRILVATDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLV 346 >UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella grylli RepID=A8PM28_9COXI Length = 421 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 144/354 (40%), Positives = 195/354 (55%), Gaps = 10/354 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+E + +L +Q +G+ T IQ AIP L GRDV+G A TGTGKTAAY LP LQ Sbjct: 3 FTEFNFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLLQQ 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGG-VAYMNHAEVFS 124 L + P G R LIL+PTR+LA Q+ + THL ATI GG + Y ++ + Sbjct: 63 LTEGP---PGQLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLLT 119 Query: 125 ENQDIVVATTGRLLQYI--KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 DI+VA GRLL + K+ NF + V+ L+LDEAD + D GF I HI R+ Sbjct: 120 GGVDIIVACPGRLLDLLQGKKNNF-LQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRR 178 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT+ D I+ +++L PV + + ++ L K LL + Sbjct: 179 QNLLFSATMSAD-IRLLIDKVLHRPVRIQIGEPKPAVTITQTLFPVSETL--KVNLLETI 235 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ +I+F R + R LA LR+ G +G + Q +R A+ + +G + L Sbjct: 236 LQNHSIHSAIIFTRTKHRAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKFL 295 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 VATDVAARGIDI +SHV NFDMP + Y HRIGRT RA + G A SL+ +D Sbjct: 296 VATDVAARGIDIDHLSHVINFDMPNTAIEYTHRIGRTGRADKLGMAFSLITKND 349 >UniRef50_A6VX62 DEAD/DEAH box helicase domain protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VX62_MARMS Length = 452 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 216/374 (57%), Gaps = 8/374 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L + +++++ + GF + IQA +P L G D++G A TGTGKTAA+L+ + Sbjct: 73 FHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMISD 132 Query: 66 LLDFP---RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LD+P ++ + R LI+ PTRELA+Q++D A +L + HL++ T+ GG++Y Sbjct: 133 FLDYPLEEKRANNFARGLIIAPTRELAIQIADEAVKLTSNCHLNVVTLVGGLSYEKQKIA 192 Query: 123 F-SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--R 179 +EN DI+VAT GRLL + + VE L+LDEADRML MGF D++ I T + Sbjct: 193 LETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRMLSMGFIPDVKSIIRMTPHK 252 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT D IQ A++ P EVS P + I Q Y + + K +L Sbjct: 253 ETRQTMLFSATFPKD-IQALAQQWTYFPKEVSVVPKEATNQNIDQVIYTVE-ADQKWPVL 310 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L+++ R+I+F +R+ +L LR+A IN L GE+ Q KR + + EG + Sbjct: 311 QQLIEKNGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDKRVKTLANFKEGII 370 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVA RGI + +V V N+ +P + Y+HRIGRT R G G ++S D + Sbjct: 371 QVLVATDVAGRGIHVDNVELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSFASEDDAFM 430 Query: 360 LGKVGRYIEEPIKA 373 + ++ R + E I+ Sbjct: 431 IPEIERVVGESIRC 444 >UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Saccharomycetales RepID=DRS1_YEAST Length = 752 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 213/354 (60%), Gaps = 8/354 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F+ L L +L+ L G+ +P+ IQ+A IP AL G+D++ A TG+GKTAA+++P ++ Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAEVF 123 LL P K R+++L PTRELA+QV+D +++A+ + + GG+ ++ Sbjct: 292 RLLYKP-AKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQML 350 Query: 124 SENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 DIV+AT GR + +I+ +F+ +VE L++DEADRML+ GF ++ I G + Sbjct: 351 KSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 410 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH-KTALLVH 241 Q LLFSAT+ I+ L+ PV + +P + K+ Q + R +H K ALL + Sbjct: 411 QNLLFSATMNS-KIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFN 469 Query: 242 LLKQPEAT---RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L+++ + T R +VFV ++E H L + G++ L G + Q +R +++ + Sbjct: 470 LIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLE 529 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 V VL+ TD+A+RG+DIP + V N+DMP+S + YLHR+GRTARAGR+G +++ V Sbjct: 530 VPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 146/406 (35%), Positives = 229/406 (56%), Gaps = 23/406 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF ELEL+E ++ A+ +KG+ PT IQ+ AIP L D+L + TGTGKTAA+ LP Sbjct: 16 LMTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPM 75 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAE 121 L +K++ LIL PTREL MQV++ R +K+ ++IA + GG Sbjct: 76 LSLTQPGDKKRTNS---LILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIR 132 Query: 122 VFSENQDIVVATTGRLLQYIKEENF---DCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 DIVVAT GRL+ +I+ + DCR + +LDEAD ML+MGF +DIE I Sbjct: 133 DLKRGADIVVATPGRLMDHIRRKTIRLDDCRHI---VLDEADEMLNMGFIEDIEEIFSFL 189 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +Q FSAT+ + ++ +E+ L +P ++ + + +I Q YY + + K L Sbjct: 190 PEERQFAFFSATMPKEIVK-LSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRD-KVDL 247 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 + LL+ + + +++F ++ V EL L +AG L G+M Q R+ + R +G Sbjct: 248 TIQLLQLHKTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGM 307 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 V+VL+ATDVAARGID+ + V N+D+P+ + Y+HRIGRT RAG++G AI+LV Sbjct: 308 VSVLIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRY 367 Query: 359 LLGKVGRY-----IEEPIKAR------VIDELRPKTRAPSEKQTGK 393 + ++ R +E P+ + ++D+L + R ++ + GK Sbjct: 368 AIKQIERLSNSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGK 413 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 205/371 (55%), Gaps = 7/371 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ FS +L +AL+D F P+ IQA IP L GRD + A TGTGKTAA+ LP Sbjct: 5 ISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPI 64 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAE 121 LQ+L + + LIL PTRELA+QV++ L+K+ ++ IA + GG Y + Sbjct: 65 LQNL----SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VV T GR+L +I + ++T ILDEAD ML MGF +D+E I + + Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 KQ LFSAT+ I+ A L DP + T K I Q + A + K L+ Sbjct: 181 KQMALFSATMPY-RIRQIANTYLNDPASIEIRMETATVKSIEQRFLFAS-VHQKPDALIR 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L+ + IVFVR + E+A L++ G+ + G++ Q R I + +G +++ Sbjct: 239 VLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDI 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ V+HV N+DMP +TY+HRIGRT RAGR G I V + L+ Sbjct: 299 LVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLIS 358 Query: 362 KVGRYIEEPIK 372 + R+ + I+ Sbjct: 359 SIERHTRQRIE 369 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 3/367 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 ++F+ DE L+ ++ +T+PT IQ +P AL GRD++G A TG+GKTAA++ P L Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312 Query: 64 QHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 H++D + G P +I+ PTREL Q+ + K +L + GG + A+ Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 E +IVV T GRL+ ++K++ + + V L+ DEADRM DMGF + IA R + Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR 432 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT I+ A +L DP+ V + + Q K L Sbjct: 433 QTLLFSATFR-KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491 Query: 243 LKQPEATRSIV-FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + ++ S++ FV K+ ELAN L++ G N L G+M Q +RN+ I + + V Sbjct: 492 LVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DIP + V N+D+ R DT+ HRIGRT RAG KG A +L+ D G Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611 Query: 362 KVGRYIE 368 + R +E Sbjct: 612 DLVRNLE 618 >UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMG6_9PAST Length = 449 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 212/379 (55%), Gaps = 13/379 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+L L+ +L AL+ KGF T IQA ++P +L G+D+ G A TGTGKT A+L H Sbjct: 36 FSDLPLNSKVLSALERKGFEYCTPIQALSLPISLAGKDIAGQAQTGTGKTMAFLTATFHH 95 Query: 66 LLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL K + PR LIL PTRELA+Q+++ A L+K T+L GG Y + Sbjct: 96 LLTHQSEKNTSQPRALILAPTRELAVQINNDAELLSKATNLKTGLAYGGDGYEKQLKTIE 155 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI-----AGETR 179 + DI++ TTGR++ Y+K+ ++ ++LDEADRM D+GF +DI ++ A E R Sbjct: 156 KGVDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPEAR 215 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKI-HQWYYRADDLEHKTAL 238 T+LFSATL +++ A + DP V P + +I + +Y ++ + L Sbjct: 216 L---TMLFSATLSYK-VRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLL 271 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 + + PE R IVF + R E+ +L G L G++ Q KR +K+ T+G Sbjct: 272 TLLEEEWPE--RCIVFANTKHRCEEIWGYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGD 329 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +++LVATDVAARG+ I DV+HVFN+D+P + Y+HRIGRT RAG G +IS + Sbjct: 330 LDILVATDVAARGLHISDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGVSISFACEEYAM 389 Query: 359 LLGKVGRYIEEPIKARVID 377 L + YI I D Sbjct: 390 NLPAIENYIAHSIPVSQYD 408 >UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DML6_9BACT Length = 542 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 207/375 (55%), Gaps = 6/375 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F ++L ++ A+ + F T +Q +P +L G+DV A TGTGKTAA+L+ H Sbjct: 117 FLSMDLCPAVQRAIHEMDFKFCTPVQEGVLPISLKGQDVAAKAQTGTGKTAAFLISMYNH 176 Query: 66 LLDFPRK--KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 ++ P+ K+G PR LIL PTRELA+Q+ A L K+ + + T GG+ + A++ Sbjct: 177 FVNNPQTEVKAGTPRALILAPTRELALQIGADAEGLGKYCDIRVETFFGGMDFDKQAQIL 236 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG--ETRWR 181 DI VAT GRL+ Y + + + R VE L +DEADRMLDMGF D+ I G R + Sbjct: 237 RGRVDIAVATPGRLMDYHRRKMINLREVEFLCIDEADRMLDMGFIPDVRKIVGYLPGRDK 296 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 + T L+SATL + A L E +V NP T K + Q Y + + +L H Sbjct: 297 RITQLYSATLNQSVLNLAASWLNEKYEKVEINPETIVSKNVDQKVYTVTANQKENVILWH 356 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNC-YLEGEMVQGKRNEAIKRLTEGRVN 300 LK E R I+F ++ LA+ L + G++ L G++ Q KR ++ G+V Sbjct: 357 -LKNEEVKRMIIFANRKFDCERLADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQ 415 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVA RGI + DVSHV N+++P + Y+HR+GRT RA G AIS + + L Sbjct: 416 VLVATDVAGRGIHVDDVSHVVNYELPYEPEDYVHRVGRTGRASALGKAISFADENSGFEL 475 Query: 361 GKVGRYIEEPIKARV 375 ++ YIE + A V Sbjct: 476 PEIECYIEMQLPAEV 490 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 158/416 (37%), Positives = 230/416 (55%), Gaps = 16/416 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+ L L + LL +L+ G+ T IQAAAIP L G D+L +A TG+GKTAA+ LP ++ Sbjct: 2 SFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIE 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT--HLDIATITGGVAYMNHAEV 122 L +K+ PR L+L PTRELA+QV A+ + GGV Y + Sbjct: 62 RLAGMEEQKA-KPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++VVAT GRL+ + + VE L+LDEADR+L +GFA+++ I + Sbjct: 121 AYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT + + A LL+DPV++ ++R + I Q D +T LL HL Sbjct: 181 QNLLFSATFPQNVVS-LANALLKDPVKIELEAASRPVESIAQRAIEVDG-NSRTGLLRHL 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ R +VFV + R + L++ GI L G M Q KR +++R + +V VL Sbjct: 239 LETEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV----EAHDHL 358 +ATDVAARGIDI + V N+D+PRS Y+HRIGRT RAG G A++ + +AH L Sbjct: 299 MATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRL 358 Query: 359 LLGKVGRYIE-EPIKARVIDELRP----KTRAPSEKQTGKPSKKVLAKRAEKKKAK 409 + K G +E E ++ V + P K +AP + + +PSKK ++A KA+ Sbjct: 359 IEKKNGLRLERERLEGFVPENWNPEDPAKGKAPVKGK--RPSKKDKLRKAAAGKAR 412 >UniRef50_B4RYM4 ATP-dependent RNA helicase, DEAD box family protein n=3 Tax=Proteobacteria RepID=B4RYM4_ALTMD Length = 441 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/435 (34%), Positives = 231/435 (53%), Gaps = 9/435 (2%) Query: 7 SELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHL 66 S+L + ++ L+ K + T IQ + PA+ G+D++ S+ TG+GKT A+L+PA+ L Sbjct: 4 SDLPVHHKIISKLESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRL 63 Query: 67 LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSEN 126 + PR LIL PTRELA QV A+ + +L + I GG Y + + N Sbjct: 64 MAQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRN 123 Query: 127 QDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK-QTL 185 I+V T GR+ ++ +++ +E LI DEADRMLD+GF+ ++ I RK QT+ Sbjct: 124 PHIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTM 183 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL+ ++ +L + V V+ ST E I Q + AD++++K +L L Sbjct: 184 LFSATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELAN 243 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++IVF RE +A L E + L G+M+Q +R + G+ ++LV T Sbjct: 244 RTYNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTT 303 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+A+RG+D+ V V NFD+P++ D Y+HRIGRT RAG+KG A SL+ D + Sbjct: 304 DLASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNSFEGLKN 363 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR-----H 420 +++ ++ DE + K+ K SK A+ +K+ AK K VKKR Sbjct: 364 HLQYALECSPHDEFSASFKGFKPKK--KVSKGATAQNGKKRVAKP-VKANVKKRVDTMSG 420 Query: 421 RDTKNIGKRRKPSGT 435 D + +RKP T Sbjct: 421 EDIGMVPVKRKPRKT 435 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 202/367 (55%), Gaps = 7/367 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L + L E LQ G+ T IQA IP L+GRDV+G A TGTGKTAA+ LP L + Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 + K P+ L+L PTRELA QV++ R + L I +I GG + Sbjct: 71 I----DVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLR 126 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E IVVAT GRLL +I+ + D + ++LDEAD ML MGF D++ I +T ++ Sbjct: 127 EGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKV 186 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ ++D A + L +P E+S + + I Q Y+ A K L LL Sbjct: 187 ALFSATMP-KRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKG-ASKLEALKRLLA 244 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + IVF R RE +A LR+ G+ L G+M Q R + L G ++VLVA Sbjct: 245 FEDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVA 304 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ ++HV N+D+P + Y+HRIGRT RAGRKG AI V + +L + Sbjct: 305 TDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIE 364 Query: 365 RYIEEPI 371 R + I Sbjct: 365 RLTRQSI 371 >UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudomonadaceae RepID=A6V0P4_PSEA7 Length = 529 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 150/384 (39%), Positives = 209/384 (54%), Gaps = 12/384 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F + L SL+ A+ D GF T IQA + L G+D +G A TGTGKTAA+L+ + Sbjct: 141 TRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISII 200 Query: 64 QHLLDFPRKKS---GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH- 119 LL P K G PR LI+ PTREL +Q++ A L K+T L++ T GG+ + Sbjct: 201 TQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL 260 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET- 178 ++ + DI+VAT GRLL + + VE ++LDEADRMLDMGF + I +T Sbjct: 261 KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP 320 Query: 179 -RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 + +QTLLFSAT D + + A++ DP V P + Q Y A K Sbjct: 321 HKGERQTLLFSATFTDD-VMNLAKQWTVDPAIVEIEPENVASDTVEQHVY-AVAGSDKYK 378 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL +L+ Q R +VF +++ V + L + GI+ + G++ Q KR ++ EG Sbjct: 379 LLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREG 438 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 ++ VLVATDVA RGI I +SHV NF +P D Y+HRIGRT RAG GT+IS D Sbjct: 439 KIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDA 498 Query: 358 LLLGKVGRYIEEPIKARVIDELRP 381 L IEE + ++ E+ P Sbjct: 499 FALPP----IEELLGRKITCEMPP 518 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 135/350 (38%), Positives = 201/350 (57%), Gaps = 6/350 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF EL L + +++A++ GF T IQA IP +L +DV+G A TGTGKTAA+ +P Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + K+ + L++ PTRELA+QVS+ ++ + + I GG Sbjct: 61 VEKV----NVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++ ++V T GR++ +I V T++LDEAD ML+MGF +DIE I + Sbjct: 117 LKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ D I+ AER + +P V I Q+Y + + K +L L Sbjct: 177 QTLLFSATMP-DPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHE-KKKFDILTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +IVF R + RV ELA L G + G++ Q KR +++ EG + +L Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 VATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+ G A++ V Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFV 344 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 145/364 (39%), Positives = 205/364 (56%), Gaps = 9/364 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+E + E LL+A+ D GF PT IQA AIP LDG+DV G A TGTGKTAA+ +P ++ Sbjct: 6 TFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIE 65 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 L P K+ + L+L+PTRELA+Q ++ L K+ L++ I GG Sbjct: 66 RL--DPDNKN--VQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRAL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +V+ T GR++ +IK +V ILDEAD+MLDMGF +DIE I +T +Q Sbjct: 122 KGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL- 242 T+LFSAT+ I D R DP V +I Q Y + + AL L Sbjct: 182 TILFSATMP-QPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLD 240 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + PE ++VF + V +L + ++ G L G+M Q +R+ + R G ++VL Sbjct: 241 MNNPEL--ALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARGID+ DV VFN+D+P+ + Y+HRIGRTARAGR G +++ V + L Sbjct: 299 IATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRD 358 Query: 363 VGRY 366 + RY Sbjct: 359 IQRY 362 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 213/370 (57%), Gaps = 7/370 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V TF E +L + L++ ++ +T PT IQ +IP GRD++ A TG+GKTAA+LLP Sbjct: 1012 VKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLPI 1071 Query: 63 LQHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L H+LD + + G P+ +I++PTRELA+Q+ + AR+ A +++L I + GG + E Sbjct: 1072 LNHILDKGYELEIGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNE 1131 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 ++ I++AT GRLL +++ ++LDEADRMLDMGF++ + I R Sbjct: 1132 SITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTMR 1191 Query: 182 K--QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 K QTL+FSAT + IQ A L D V V+ + Q Y D +K A L Sbjct: 1192 KEHQTLMFSATFP-EEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKF-NKRAKL 1249 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + +L+ A +IVFV + LA++ E + G+ +Q +R +A++ G++ Sbjct: 1250 MEILRD-GADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKM 1308 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHL 358 VL+AT VA+RG+DI +VSHV N+DMP + D Y+HRIGRT R G G A S ++ D Sbjct: 1309 KVLIATSVASRGLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSFFDSDKDRA 1368 Query: 359 LLGKVGRYIE 368 L G + + +E Sbjct: 1369 LAGDLVKILE 1378 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 200/365 (54%), Gaps = 4/365 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F L L+ LL AL D PT IQ IPP ++GRDVLG A TG+GKT +LLP+L Sbjct: 2 SFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL- 60 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 H + +IL+L+PTRELA Q+ ARE K+ + GG + Sbjct: 61 HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFLR 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+V+AT GRL+ +++ + V T++LDEADRMLDMGF D+E I +QT Sbjct: 121 RPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLF+ATL IQ + +DPV + ++ I Q K LL +L Sbjct: 181 LLFTATLPA-RIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILT 239 Query: 245 QPEAT--RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +P+ T ++++F R + +LAN L G + L G+ Q +RN + + G+ +L Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+ V N+D+P+S + Y+HRIGRT RAGR G AIS D LL Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRD 359 Query: 363 VGRYI 367 + R + Sbjct: 360 IERLL 364 >UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=Actinobacteria (class) RepID=C6WM51_ACTMD Length = 609 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 201/351 (57%), Gaps = 7/351 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+EL + E ++ AL + G R AIQ +P AL G DV+G A TGTGKT + +P LQ Sbjct: 53 TFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 ++ G P+ L++ PTREL +QV+ + +KH + + I GG Y Sbjct: 113 RVI---TPGDGTPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAALR 169 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + D+VV T GRLL ++ + V +L+LDEAD MLD+GF DIE + +QT Sbjct: 170 KGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQT 229 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSA--NPSTRERKKIHQWYYRADDLEHKTALLVHL 242 +LFSAT+ G I A L P V A N + ++ Q+ YRA L+ K LL + Sbjct: 230 MLFSATMPGPIIT-LARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALD-KVELLARV 287 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + S++F R + ++A+ + E G + G++ QG R +A++ G+++VL Sbjct: 288 LQARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVL 347 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 VATDVAARGID+ V+HV N+ P TY+HRIGRT RAGR G A++LV+ Sbjct: 348 VATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVD 398 >UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales RepID=A7K1S7_VIBSE Length = 416 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 206/358 (57%), Gaps = 9/358 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L +L+E L+ +++PT IQ+ IP L+G+D++G A TG+GKTAA+ LP LQ Sbjct: 9 TFADLGLIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQ 68 Query: 65 HLL---DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATIT--GGVAYMNH 119 ++ + ++ LIL PTRELA QV+ + + + H I T+ GGV+ Sbjct: 69 KIVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DI+VAT GRLL + V+TL+LDEADRML +GF +++ I Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +KQTLLFSAT D + ++ LL DPVEV + E + Q + + E KTA+L Sbjct: 189 EKKQTLLFSATFP-DKVTTLSQHLLRDPVEVQLQSA--EASTLVQRVFSVNKGE-KTAVL 244 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 HL+KQ + ++++FV + + LA L + GI G+ QG R + G + Sbjct: 245 AHLIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEI 304 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 VL+ATD+AARG+DI + V NFD+PRS Y+HRIGR+ RAG G +SL++ D+ Sbjct: 305 QVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDY 362 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 199/356 (55%), Gaps = 6/356 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL L + A+ D G+T T IQ+A IP ++G DV+G + TGTGKTAA+ +P ++ Sbjct: 3 FNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIEM 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 L RK+ P+ LIL+PTRELAMQV D R+ K+ + + GG Sbjct: 63 LEVTDRKR---PQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELK 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DIVV T GR+L +I+ L+LDEAD ML+MGF +DIE + ++QT Sbjct: 120 KGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQT 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I + + +PV + + KI Q YY E K +L+ L+ Sbjct: 180 VLFSATMP-KPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPK-EAKKEILMQLIS 237 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +++F ++ V EL + L G L G+M Q R + +G++N+LVA Sbjct: 238 MQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVA 297 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 TDVAARGID+ + VFN+D+P+ + Y+HRIGRT RAG++G A++L+ A L Sbjct: 298 TDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYAL 353 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 198/350 (56%), Gaps = 10/350 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+++ + +L++L + GF +PT IQ A +P A +G+D++G A TGTGKTAA+ +P L + Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62 Query: 66 LLDFPRKKSGPPRI--LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L RI L++ PTRELA Q+ D L K+T IA I GGV+Y Sbjct: 63 L------DCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAAL 116 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +IVVAT GRL + + D ++T LDEAD +L +GF +I I + ++Q Sbjct: 117 NSGVNIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQ 176 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 F+AT + + + ++ + + +S + +KI Q + + E K LV L Sbjct: 177 NFFFTATFD-EKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSE-EEKLITLVKFL 234 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + T S++F R + RV ELA+ L+E G + ++G+MVQ R + R + +VN++V Sbjct: 235 DFKKPTASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIV 294 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 ATDV ARGID+ V VFNFD+P + Y HRIGRT R R G AIS V+ Sbjct: 295 ATDVMARGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVK 344 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 217/389 (55%), Gaps = 10/389 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALD-GRDVLGSAPTGTGKTAAYLLPALQ 64 F + L E +L A+Q KG+ +PT IQ +P AL +D++ A TGTGKTAA+ +P L+ Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + DF K + + +I+TPTRELA+Q+ + + L + I T+ GG + + Sbjct: 80 RI-DF--KANKFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLE 136 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DIVV T GR++ ++ + D VE L+LDEADRMLDMGF D+ I T K+T Sbjct: 137 KGVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRT 196 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ + I D A + +++ + VS + Q Y+ D+ + K LL ++ Sbjct: 197 FLFSATMPKE-IVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDE-KDKLPLLCRIID 254 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 IVF + + V E++ L + G N L G+ Q +R + + + ++ +LV Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGIDI ++HV N+ +PR + Y+HRIGRT RAG+KG AI+ V D+ +V Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGK 393 R+ KA++I + P+ +Q K Sbjct: 375 RF----AKAKIIKDSIPQVEDILNRQLEK 399 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 145/431 (33%), Positives = 235/431 (54%), Gaps = 9/431 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F +L + + LL A++D G+ +PT IQ AIP L DV +A TGTGKTAA+ L LQ Sbjct: 2 SFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQ 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L K R L++ PTREL++Q+ + + AK+ ++IA + GG + ++ Sbjct: 62 RLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKILK 121 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E DIV+AT GR+L+++ ++ VE +LDEADRMLDMGF ++I I R QT Sbjct: 122 EGVDIVIATPGRVLEHV-DKGLSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQT 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT D ++ ++ +L P + + I+Q Y D E K LL +++ Sbjct: 181 LLFSATF-SDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDT-EKKAPLLAYIIG 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF R + L L++ G+ + G+ Q R + + EG++ VLVA Sbjct: 239 SRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVA 298 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+A+RG+DI ++ V N+++P + Y+HR+GRT RAGR G AISL++ ++ + + Sbjct: 299 TDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDIE 358 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 + I I +I P P+ ++ + K+ ++E KK + K + + +K+ +K Sbjct: 359 KLIGMKIPQEIIAGFEPD---PTIRRLDQDELKL---KSEHKKVEVKHERKPRKKEDGSK 412 Query: 425 NIGKRRKPSGT 435 +KP T Sbjct: 413 KSANYKKPVTT 423 >UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=Eukaryota RepID=RH10_ARATH Length = 456 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 13/365 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V TF+EL + E L++A + G+ P+ IQA A+P AL+G+DV+G A TG+GKT A+ +P Sbjct: 7 VVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIP 66 Query: 62 ALQHLLDF-----PRKKSGP-PRIL--ILTPTRELAMQVSDHARELAKHTHLDIATITGG 113 LQ LL++ P+K P P +L+PTRELA+Q+++ L L A + GG Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126 Query: 114 VAYMNHAEVFSENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIE 172 + M + ++VAT GRL ++ + + F ++++ L+LDEADR+L+ F + + Sbjct: 127 IDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLN 186 Query: 173 HIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDL 232 I E ++T LFSAT+ ++ L +PV++ A + Q YR Sbjct: 187 QILEEIPLERKTFLFSATMT-KKVRKLQRACLRNPVKIEAASKYSTVDTLKQ-QYRFVAA 244 Query: 233 EHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 291 ++K LV++L + PE+T S++F R + LA LR G + G+M Q KR A+ Sbjct: 245 KYKDCYLVYILSEMPEST-SMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGAL 303 Query: 292 KRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 351 + G N+LV TDVA+RG+DIP V V N+D+P + Y+HR+GRTARAGR G ISL Sbjct: 304 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISL 363 Query: 352 VEAHD 356 V ++ Sbjct: 364 VNQYE 368 >UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NAH8_9BACT Length = 542 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 141/353 (39%), Positives = 198/353 (56%), Gaps = 6/353 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F +L L E + +Q GF T IQA +P L+GRD+ G A TGTGKTAA+LL Sbjct: 125 TRFLDLPLHEDVQFGIQHAGFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVF 184 Query: 64 QHLLDFP--RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 LL+ P +K G PR L+L PTRELAMQ+ A L T L + GG+ + Sbjct: 185 TRLLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRR 244 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--R 179 + D+V+ T GR++ Y + + VE L++DEADRMLDMGF D++ I + + Sbjct: 245 SLEQPVDLVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRK 304 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSATLE D I A L +PV V + P + I Q +Y + K ALL Sbjct: 305 GERQTLLFSATLE-DHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVLR-DEKLALL 362 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +++L+ R ++F +++ L L G L G++ Q KR + ++R G Sbjct: 363 LYILRTEPYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTE 422 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 +++ATDVAARGI + DVS V N+D+P + Y+HRIGRT RAG G +IS + Sbjct: 423 KIVIATDVAARGIHVDDVSLVINYDLPERAEDYVHRIGRTGRAGHNGKSISFL 475 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 210/383 (54%), Gaps = 12/383 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+T F + +L L +A++ GF T IQA IP L +DV+G A TGTGKTAA+ + Sbjct: 1 MTIT-FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ + +S + +++ PTRELA+QVS+ ++ + + I GG Sbjct: 60 PLVEKI----NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +N I+V T GRLL +I + V T++LDEAD ML+MGF +DIE I Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPA 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 QTLLFSAT+ I+ AER + +P V I Q+Y + K L Sbjct: 176 EHQTLLFSATMPA-PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHE-RKKFDTLT 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL +IVF R + RV EL L G + G++ Q KR A+++ +G + Sbjct: 234 RLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIE 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+ G A++ + + +L Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDML 353 Query: 361 GKVGRYIEEPIKARVIDELRPKT 383 R IE+ K R +D ++ T Sbjct: 354 ----RAIEQTTK-RKMDRMKAPT 371 >UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammaproteobacteria RepID=RHLB_PSEPK Length = 398 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 204/378 (53%), Gaps = 8/378 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F + +L L+ A+ D GF T IQA + L G+D +G A TGTGKTAA+L+ + Sbjct: 9 TRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISII 68 Query: 64 QHLLDFPRKKS---GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L P K G PR LI+ PTREL +Q++ A L K+T L++ + GG+ + Sbjct: 69 SQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQL 128 Query: 121 EVF-SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET- 178 + + + DI+VAT GRLL + + VE ++LDEADRMLDMGF + I +T Sbjct: 129 KALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP 188 Query: 179 -RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 + +QTLLFSAT D + + A++ +P V P + + Q Y + K Sbjct: 189 PKSERQTLLFSATFTDD-VMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSD-KYK 246 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL +L+ Q + R +VF +++ V + L GIN L G++ Q KR ++ EG Sbjct: 247 LLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREG 306 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 R+ VLVATDVA RGI I +SHV NF +P D Y+HRIGRT RAG G +IS D Sbjct: 307 RITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDS 366 Query: 358 LLLGKVGRYIEEPIKARV 375 L + + IK + Sbjct: 367 YQLPAIEALLGRKIKCEM 384 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/350 (39%), Positives = 202/350 (57%), Gaps = 8/350 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F+EL L LL+AL++ G+ RP +QAA P ++GRDV+ + TG+GKTA + +P +Q Sbjct: 63 SFAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQ 122 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 H+ D K + + LIL PTRELA+QVS +LAK L I I GG + + Sbjct: 123 HI-DAASKGA---QALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALA 178 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE--TRWRK 182 +V T GR+L +++ + D + + LILDE D ML MGF ++IE I + + Sbjct: 179 AGAQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENR 238 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ D IQ A R + DP E+S + I YY + +T L+ + Sbjct: 239 QTVLFSATIP-DEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGV-ARTRDLLKV 296 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ +I+F RE + +A +L+ G + + ++ Q R +KR+ + ++ L Sbjct: 297 LRAESPDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFL 356 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 VATDVAARGIDI D+SHV N+ P S + Y+HR GRT RAG+ G AISLV Sbjct: 357 VATDVAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLV 406 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 213/371 (57%), Gaps = 11/371 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLPALQ 64 F L L ++++EAL+ KGFT PT IQ IP L G +D++G A TGTGKTAA+ LP ++ Sbjct: 4 FRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPIIE 63 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 ++ R+ +G + ++LTPTRELAMQV+D + +AT+ GG + + Sbjct: 64 NV----REGAGHVQAIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLKALK 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DIVV T GR+L +I+ + D + +LDEAD M +MGF +++ I ++T Sbjct: 120 RGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRT 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + + + A++ + D VS E ++ ++ + AL + Sbjct: 180 LLFSATMPRE-VMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDA 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 QPE +VF R R +A L E G + G++ Q +R + + R + R +LVA Sbjct: 239 QPEFY-GLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVA 297 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+PD+SHV NF +P+ +++HR+GRT RAG+KG A++L+ + GK+ Sbjct: 298 TDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPRE---FGKL- 353 Query: 365 RYIEEPIKARV 375 RYI + K RV Sbjct: 354 RYITKITKLRV 364 >UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteobacteria RepID=Q1QAQ0_PSYCK Length = 384 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 210/377 (55%), Gaps = 11/377 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF++L L + L A+ D GFT T IQA +P L +D +G A TGTGKTA +LL + Sbjct: 5 TTFTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIM 64 Query: 64 QHLLDFP-----RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY-M 117 + LL P + G PR +++ PTRELA Q+ D L K+T L I GG Y Sbjct: 65 EALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYET 124 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 E+ + DI++AT GRL+ + + VE L+LDEADRMLDMGF DI+ + G Sbjct: 125 QQHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGR 184 Query: 178 T--RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 +Q+LLFSAT D + A R L +P V P + + + Q +Y + + K Sbjct: 185 MPPNTDRQSLLFSATFNQD-VMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTE-DQK 242 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 + ++ + I+F ++++V L + LR+ G L G+++Q KR + ++R Sbjct: 243 LEAVERIITDSTVEKVIIFANRKDQVKRLYHKLRQ-GHKIVMLSGDVIQQKREKYLQRFK 301 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 +G +VLVATDVA RGI + DVSHV N+ +P D Y+HRIGRT RAG+ G +IS V Sbjct: 302 DGHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSED 361 Query: 356 DHLLLGKVGRYIEEPIK 372 D + + ++++ K Sbjct: 362 DAFNIPALEKHLDTKFK 378 >UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encephalitozoon cuniculi RepID=RRP3_ENCCU Length = 400 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 203/358 (56%), Gaps = 20/358 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L +DESL++ Q+KG TRPT +Q IP L G DV+ + TG+GKT A++LP + H Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LL +K+ L++ PTREL+ Q+++ + + T L + + GG + A S+ Sbjct: 63 LL----QKNRSFYCLVVAPTRELSSQIAE-CFNMFQATGLRVCLLVGGANFNVQANQLSK 117 Query: 126 NQDIVVATTGRLLQYI-KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR+ +++ K ++F V +LDEADR + F +D+E I R ++QT Sbjct: 118 RPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQT 177 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSAN------PSTRERKKIHQWYYRADDLEHKTAL 238 LLF+AT+ D I + +L+ P + P+ +E YY ++ K + Sbjct: 178 LLFTATM-SDEISKLSSSILKRPKTIRTAEKYETVPALKE-------YYLFVAMKWKNSA 229 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 LV LL+ + IVFV ++ L G + L GE+ Q KR EA++ E R Sbjct: 230 LVELLEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESR 289 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 NVLV TD+ +RG+DI V V NFD+P+SG Y+HR+GRTARAGR GTAI+LV +D Sbjct: 290 FNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYD 347 >UniRef50_D0N9A9 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9A9_PHYIN Length = 758 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 219/380 (57%), Gaps = 15/380 (3%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L+L ++ A+ GF +PT IQ AIP AL G+D+ SA TG+GKTAA+LLP L+ Sbjct: 132 TFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILE 191 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L F ++ R++I+ P RELA Q +LA+ T + + GG+ Sbjct: 192 RL-QFRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQEAELR 250 Query: 125 ENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+VV T GR++ +++ ++ +E L+LDEADR+L++GF +++ + ++Q Sbjct: 251 NRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQ 310 Query: 184 TLLFSATLEG--DAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYR-----ADDLEHKT 236 T+LFSAT+ D + D + ++ PV +S +P K + Q + R DD E Sbjct: 311 TMLFSATMTSKVDQLIDLS---MKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDRE--- 364 Query: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 A+L+ L + + +IVF+ + H + AGI L G + Q +R EA+++ + Sbjct: 365 AILLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRD 424 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G V+VL+ TD+AARGID+ V V N++MP+ TY+HR+GRTARAGR G A++L Sbjct: 425 GTVDVLLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESR 484 Query: 357 HLLLGKVGRYIEEPIKARVI 376 L++ +V R+ + +K+R + Sbjct: 485 RLVMKQVSRHCQGFVKSRAV 504 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 145/396 (36%), Positives = 222/396 (56%), Gaps = 9/396 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L LD +L AL++ G+ +P+ IQ IP L+G DV+G A TGTGKTAA+ LPAL Sbjct: 63 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122 Query: 66 LLDFP--RKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 + + S ++L+L PTRELA+QV++ A H + I GG Y Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR++ ++++ + D ++ L+LDEAD ML MGFA+D+E I T K Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LFSAT+ ++I+ A++ L DP EV T I Q Y + HK + + Sbjct: 243 QVALFSATMP-NSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMH-SHKLDAMTRV 300 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ IVFVR ++ E+A+ L+ G + G++ Q R + L +GR+++L Sbjct: 301 LEVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDIL 360 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR+G AI V + +L Sbjct: 361 VATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYML-- 418 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 R IE+ + +V P A +E + + ++++ Sbjct: 419 --RQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQI 452 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 11/377 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F+++ L +S+++ + +TRPT IQA A+P AL GRD+LG A TG+GKTAA+ +P Sbjct: 122 IESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPM 181 Query: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 +QH L P + G P L+L PTRELA Q+ + ++ A + GG Sbjct: 182 IQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQR 241 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +IVVAT GR + +++E N + ++LDEADRMLDMGF I + Sbjct: 242 SELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQ 301 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + QTLLFSAT+ + I+ A+ L +PV+V + + Q + + E LL Sbjct: 302 KHQTLLFSATMPME-IETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLA 360 Query: 241 HLLKQ-PEATR-------SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 L+++ +A R +IVFV ++ R E+A L G+ L G Q +R A++ Sbjct: 361 LLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALR 420 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 G N+LVATDVA+RG+D+ V+HV N D+P++ + Y+HRIGRT RAG G A S Sbjct: 421 DFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFY 480 Query: 353 EAHDHLLLGKVGRYIEE 369 D L+ + + I + Sbjct: 481 TDRDVFLVAHIRKAIAD 497 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 214/408 (52%), Gaps = 11/408 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +V +F +L L+E LL+A+++ GFT P+ IQ+ AIP L+GRDV+G A TGTGKTAA+ LP Sbjct: 3 SVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLP 62 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 LQ + R L+L PTRELA+QV++ LAKH + I ++ GG A Sbjct: 63 LLQRIDAADRSVQA----LVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQA 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +VV T GR+L +I V +LDEAD MLDMGF +DIE I E Sbjct: 119 SALRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPE 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q+ FSAT+ D I + A R L +P + Q ++ A+ Sbjct: 179 WVQSAFFSATMP-DGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAV-C 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + ++IVF ++ V ELA L++ GI L G++ Q +R + R G ++ Sbjct: 237 RIFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGIS 296 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ DV V NFD+P +TY+HRIGRT RAGR G A S D L Sbjct: 297 VLVATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKL 356 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 + R I R + P S +TG+ ++V A A + + Sbjct: 357 RDIQRVTGSRIDRRAM----PTAADASRARTGQLLEEVAAGLASAETS 400 >UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVN9_DYAFD Length = 481 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 155/432 (35%), Positives = 228/432 (52%), Gaps = 35/432 (8%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F+E EL E +L A+ + + T IQ AIP L G+D+L A TGTGKTAAYL+P L Sbjct: 2 NFNEFELHEDVLNAVDSMNYQQATPIQEQAIPHILSGKDLLACAQTGTGKTAAYLIPILD 61 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVA---YMNHAE 121 + + +G LIL PTRELA+Q+ + L + GG + + Sbjct: 62 KVAHEANEHTG---ALILVPTRELAVQIDQQIQGLGYFVGATSIAVYGGNKGPEWDQQKK 118 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 ++ DI++AT GRL+ +++ R + L+LDEADRMLDMGF DI I Sbjct: 119 ALTQGADIIIATPGRLIAHLQLGYVHFRDLRHLVLDEADRMLDMGFLGDILKIMSYLPNE 178 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTL+FSAT+ I D A+R+L++P E+ S R +I Q +Y A D E K LL+H Sbjct: 179 RQTLMFSATMP-PKIGDLAKRILKEPEEIRLAVS-RPADRIDQQFYLAKD-EQKLPLLMH 235 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LLK E ++F ++ V + LR+ G+ + + QG+R ++ + + Sbjct: 236 LLKGVENISMVLFTSRKSNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFPI 295 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDV +RGIDI ++SHV N+D+PR + Y+HRIGRTARA KGTA++ + D + Sbjct: 296 LVATDVLSRGIDIDNLSHVVNYDVPRDPEDYVHRIGRTARAESKGTAMTFINEQDQKYVL 355 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 K+ R E+ ++ KK L +A E PR++ R Sbjct: 356 KIERLFEKELE-----------------------KKSLTAELGLGEAPLFEPPRLRSGGR 392 Query: 422 DTKNIGKRRKPS 433 + KN R+KP+ Sbjct: 393 NKKN---RKKPA 401 >UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C1LZ65_SCHMA Length = 840 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 204/354 (57%), Gaps = 3/354 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V +F+ L LDE L+EA++ G+T+PT IQA A+P L GRDV+G TG+GKTAA+L P Sbjct: 296 VCSFAHLGLDEPLMEAIRKAGYTQPTPIQAQAVPLILAGRDVIGIGKTGSGKTAAFLWPL 355 Query: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H++D P K G P +I PTRELA+Q+ A++LAK +L + GG + + Sbjct: 356 IIHIMDQPELKLGDGPIGVICAPTRELALQIYSEAKKLAKVYNLTVVCAYGGGSLWEQQK 415 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I+V T GRL+ +K+++ + R V L+ DEAD+M ++GF + IA R Sbjct: 416 ACEAGCEILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRPD 475 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV- 240 +QTLLFSAT + ++ A +L DPV + + I Q D +E K L Sbjct: 476 RQTLLFSATFK-RRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKWDWLTR 534 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L++ ++FV ++ E+A L+ + + G+M Q RN I+ Sbjct: 535 NLVRLTTEGSVLIFVTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKRQEAP 594 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 +LVATDVA+RG+DIP + +V N+++ R DT+ HRIGRT RAG KGTA +L A Sbjct: 595 ILVATDVASRGLDIPSIHNVINYEVARDIDTHTHRIGRTGRAGAKGTAYTLFVA 648 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 209/370 (56%), Gaps = 8/370 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F EL L E +L+ L D GF IQ A IP L GRDV+G A TG+GKTAA+ L Sbjct: 1 MTKFQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSM 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ + + K+G + LI+ PTRELAMQ++D ++ K+T + +AT+ GG + Sbjct: 61 LQEI----QPKNGI-QGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +IVVAT GRL+ ++K + + R V ++LDEAD MLDMGF DI I + Sbjct: 116 LERGVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDR 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 LFSAT+ + ++ +E L +P + + + I Q Y D + K L+ Sbjct: 176 VMSLFSATMPTEILR-LSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRD-KFKYLIDF 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +K P ++IVF + R ++A +L + + +EG+M Q +R +++ + G+ ++L Sbjct: 234 IK-PTKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADIL 292 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVA+RGID+P V V N+D+P Y HRIGRTARAG KG A++ V Sbjct: 293 VATDVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNL 352 Query: 363 VGRYIEEPIK 372 + R I+ PIK Sbjct: 353 IKRQIKVPIK 362 >UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=C5S9J5_CHRVI Length = 683 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 218/435 (50%), Gaps = 53/435 (12%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T T F L LD +L L + GFT+ T IQA +P AL G D+ G A TGTGKTAA+L+ Sbjct: 6 LTSTRFDSLALDPRILAGLAEAGFTQCTPIQAETLPIALQGHDIAGQAQTGTGKTAAFLV 65 Query: 61 PALQHLL--------------DFPRKKSGPPRI--------------------------- 79 +Q LL + P G P Sbjct: 66 ALMQRLLHEPPEAMPESAAAPETPVSADGSPETESLDPANALEAESEPESAPAPARRRRG 125 Query: 80 ---LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGR 136 L+L PTRELA+Q+ LAKHT L + GG Y + + DI++ T GR Sbjct: 126 PRALVLAPTRELAVQIHKDTLALAKHTGLRSTVVYGGTGYQQQRDELAAGVDILIGTPGR 185 Query: 137 LLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL--LFSATLEGD 194 L+ Y K+ FD + +E ++LDEADRM D+GF +DI ++ + +Q L LFSATL Sbjct: 186 LIDYYKQHVFDLKRIEVVVLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSATLSY- 244 Query: 195 AIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVF 254 + + A + P V ++ Q Y + E K LL+ L++ R IVF Sbjct: 245 RVTELAYEHMNHPRLVKIETEQVTADRVRQVCYMTAN-EEKIPLLLGLIRGWPDGRIIVF 303 Query: 255 VRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 314 V + + +L+ GI+ L G++ Q KR + ++ T G + VLV TDVAARG+ I Sbjct: 304 VNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARGLHI 363 Query: 315 PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE-----E 369 PDV+HV N+D+P + Y+HRIGRTARAG G A+S V L + +YI E Sbjct: 364 PDVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCLLDIEQYIGIKVPVE 423 Query: 370 PIKARVIDELRPKTR 384 P+ ++ E+ P++R Sbjct: 424 PVDPALLAEVDPRSR 438 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 194/355 (54%), Gaps = 5/355 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T+ F E L AL G+ PT IQ A+PP L+GRD+LG A TG+GKTA ++L Sbjct: 23 LTIENFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVL 82 Query: 61 PALQHLLDFPRKKSGPPRIL--ILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P LQ + + P ++L +L PTRELA+Q+ LA++ + A + GGV+ Sbjct: 83 PLLQKIAS-QNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGP 141 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 ++VAT GRLL I D VETL+LDEADRM DMGF +DI+ I Sbjct: 142 QINALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAML 201 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++T LFSAT+ + I+ FA +L++P V + + +I Q E K + Sbjct: 202 PEARRTALFSATMPVE-IKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTE-KQSR 259 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L +L R IVF R + +A L AGI+ G Q R A+ G Sbjct: 260 LHTILADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGH 319 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 + VLVATD+AARGID+ +++HV NFDMP +TY+HR+GRTAR G G AISL + Sbjct: 320 IRVLVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCD 374 >UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMK6_ACIBL Length = 423 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 204/373 (54%), Gaps = 10/373 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF+++ L + L + L+ F PT +Q AIPPALDGRD+L +A TGTGKT A+++PA Sbjct: 26 LTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPA 85 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L+ L D + ++LIL PTRELAMQV +L A + GG + N + Sbjct: 86 LEMLRD---TEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQIQS 142 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VVAT GRL Y+ D VE L+LDEADRM+DMGF I+ I K Sbjct: 143 IRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDK 202 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTL FSAT+ G A+ + L + V V + + + K AL L Sbjct: 203 QTLCFSATM-GPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALR-QL 260 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + E +++VF R + LA L G + + G+ Q +RN A+ +G + VL Sbjct: 261 LYEQEG-KTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVL 319 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ D++HV NFD+P+ + ++HR+GRT RAG G A SLV + L Sbjct: 320 VATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLVSGAEVFEL-- 377 Query: 363 VGRYIEEPIKARV 375 R IE +K ++ Sbjct: 378 --RNIERTLKLKI 388 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 8/368 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL + +L A+ D G+ +P+ IQ +IP L+G D++G + TG+GKTAA+ +P +++ Sbjct: 3 FNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIEN 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + + +G + LIL PTREL +QVS +L K+ + I ++ GG + + Sbjct: 63 I-----EANGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLK 117 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +IVV T GRL+ ++ + ++T++LDEAD M DMGF D++ I T +QT Sbjct: 118 KGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQT 177 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 FSAT+ G IQ+F++ +P EV +I Q+Y + + + AL+ LL+ Sbjct: 178 CFFSATM-GPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALM-RLLE 235 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +A +IVF + +V L L + L G++ Q R++ +K+ + +LVA Sbjct: 236 IHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVA 295 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+D+ DV VFN+D+P+ + Y+HRIGRTARAG+ G + SL+ D+ L ++ Sbjct: 296 TDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIE 355 Query: 365 RYIEEPIK 372 Y + IK Sbjct: 356 NYTKANIK 363 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 205/371 (55%), Gaps = 11/371 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L E +L+A+ D GF P+ IQ + IP L+G DVLG A TG+GKTAA+ LP L Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 + P +K P++L++ PTRELA+QV+D K+ I T+ GG Y Sbjct: 66 QI--DPSEKH--PQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +VV T GR+L +I+ + + ++LDEAD ML MGF D+E + E Q Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ--WYYRADDLEHKTALLVH 241 T LFSAT+ + I+ +R + DP EV + I Q WY K L+ Sbjct: 182 TALFSATMP-EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHG---VRKNEALLR 237 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ + +I+F R + ++ L + G + L G+M Q R + + RL G +++ Sbjct: 238 FLEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDI 297 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 +VATDVAARGIDI +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + LL Sbjct: 298 VVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLR 357 Query: 362 KVGRYIEEPIK 372 + +++ I Sbjct: 358 NIEHLMKKGIN 368 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 204/369 (55%), Gaps = 6/369 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + L++ ++EAL G+ +P A+Q A IP L +DV+ A TG+GKTA++ +P LQ Sbjct: 3 FKDFGLEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQQ 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+ P+ LIL PTRELAMQ+ ++ + I G + + + Sbjct: 63 LI----WNEKLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQDLQQ 118 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 ++ AT GR+L +++E FD ++ +++DEAD MLDMGF ++E + ++ T Sbjct: 119 RTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTA 178 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ + IQ A R L DP+ ++ + I + Y+ + + +TALL HLL + Sbjct: 179 LFSATMPKEIIQ-LANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALL-HLLGK 236 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +I+FVR +ERV + L+ I L G ++Q +R +K G +LVA+ Sbjct: 237 ETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVAS 296 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARGIDI D+SHV N D P +TY+HR+GRTAR G AIS V A D L ++ Sbjct: 297 DVAARGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQLED 356 Query: 366 YIEEPIKAR 374 Y+ + R Sbjct: 357 YLGYSLSMR 365 >UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Tax=Eukaryota RepID=DDX42_DICDI Length = 986 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 199/359 (55%), Gaps = 9/359 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT+F D+ LL+A+ + PT IQ AIP AL GRD++ A TG+GKTA ++ P+ Sbjct: 304 VTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPS 363 Query: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H++D P + G P L L PTRELA Q+ + +K+ L + GGV+ + Sbjct: 364 ISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCK 423 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I+VAT GRL+ IK + V L+LDEAD+M D GF + I R Sbjct: 424 ELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPD 483 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY----RADDLEHKTA 237 +QTLLFSAT + + +++FA +L DP+++S I Q +D T Sbjct: 484 RQTLLFSATFKPN-VEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTN 542 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L LL Q ++FV + V +L++ L + G C L G+ Q +R++ I+ EG Sbjct: 543 QLALLLSQGSV---LIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEG 599 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 ++N+L+ATDVAARG+DIP + +V N+D R +++ HRIGRT RAG G A +L+ D Sbjct: 600 KINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammap... 673 0.0 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 606 e-172 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 592 e-168 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 590 e-167 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 586 e-166 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 586 e-166 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 586 e-166 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 584 e-165 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 582 e-165 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 581 e-164 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 581 e-164 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 580 e-164 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 579 e-163 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 577 e-163 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 577 e-163 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 577 e-163 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 576 e-163 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 575 e-162 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 574 e-162 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 573 e-162 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 573 e-162 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 572 e-162 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 572 e-162 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 572 e-162 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 572 e-161 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 571 e-161 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 571 e-161 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 571 e-161 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 571 e-161 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 571 e-161 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 570 e-161 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 570 e-161 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 570 e-161 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 570 e-161 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 570 e-161 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 569 e-161 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 569 e-161 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 568 e-160 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 568 e-160 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 568 e-160 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 567 e-160 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 567 e-160 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 566 e-160 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 566 e-160 UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteri... 566 e-160 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 566 e-160 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 565 e-159 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 564 e-159 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 564 e-159 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 564 e-159 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 563 e-159 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 563 e-159 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 562 e-159 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 562 e-159 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 561 e-158 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 561 e-158 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 561 e-158 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 560 e-158 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 560 e-158 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 560 e-158 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 560 e-158 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 560 e-158 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 560 e-158 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 558 e-157 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 558 e-157 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 558 e-157 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 558 e-157 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 557 e-157 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 557 e-157 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 557 e-157 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 557 e-157 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 556 e-157 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 556 e-157 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 555 e-156 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 555 e-156 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 555 e-156 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 554 e-156 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 554 e-156 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 554 e-156 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 554 e-156 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 554 e-156 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 553 e-156 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 553 e-156 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 552 e-156 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 552 e-156 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 552 e-156 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 552 e-155 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 552 e-155 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 551 e-155 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 551 e-155 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 551 e-155 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 551 e-155 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 551 e-155 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 551 e-155 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 550 e-155 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 550 e-155 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 550 e-155 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 549 e-155 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 549 e-155 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 549 e-155 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 549 e-154 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 549 e-154 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 548 e-154 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 548 e-154 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 548 e-154 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 548 e-154 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 548 e-154 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 547 e-154 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 547 e-154 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 547 e-154 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 547 e-154 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 546 e-154 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 546 e-154 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 546 e-154 UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein... 546 e-153 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 545 e-153 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 545 e-153 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 545 e-153 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 545 e-153 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 544 e-153 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 544 e-153 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 544 e-153 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 544 e-153 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 544 e-153 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 544 e-153 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 544 e-153 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 544 e-153 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 543 e-153 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 543 e-153 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 542 e-153 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 542 e-153 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 542 e-152 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 542 e-152 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 542 e-152 UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 541 e-152 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 541 e-152 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 541 e-152 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 541 e-152 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 541 e-152 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 541 e-152 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 541 e-152 UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=G... 541 e-152 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 541 e-152 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 541 e-152 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 541 e-152 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 541 e-152 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 540 e-152 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 540 e-152 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 540 e-152 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 540 e-152 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 539 e-152 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 539 e-152 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 539 e-152 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 539 e-152 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 539 e-151 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 539 e-151 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 539 e-151 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 539 e-151 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 539 e-151 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 539 e-151 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 538 e-151 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 537 e-151 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 537 e-151 UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collins... 537 e-151 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 537 e-151 UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 ... 537 e-151 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 537 e-151 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 537 e-151 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 537 e-151 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 537 e-151 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 537 e-151 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 536 e-151 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 536 e-151 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 536 e-151 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 535 e-151 UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Pr... 535 e-150 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 535 e-150 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 534 e-150 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 534 e-150 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 534 e-150 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 533 e-150 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 533 e-150 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 533 e-150 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 532 e-150 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 532 e-150 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 532 e-149 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 532 e-149 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 532 e-149 UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI 532 e-149 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 531 e-149 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 531 e-149 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 530 e-149 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 530 e-149 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 530 e-149 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 530 e-149 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 529 e-149 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 529 e-149 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 529 e-149 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 529 e-149 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 529 e-149 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 529 e-149 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 529 e-148 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 528 e-148 UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 528 e-148 UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammapr... 528 e-148 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 528 e-148 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 528 e-148 UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales ... 527 e-148 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 527 e-148 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 527 e-148 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 527 e-148 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 527 e-148 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 526 e-148 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 526 e-148 UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family... 526 e-148 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 526 e-148 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 526 e-148 UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammapr... 525 e-147 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 525 e-147 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 525 e-147 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 525 e-147 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 524 e-147 UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Rein... 524 e-147 UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 524 e-147 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 524 e-147 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 524 e-147 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 524 e-147 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 524 e-147 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 524 e-147 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 523 e-147 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 523 e-147 UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=... 523 e-147 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 523 e-147 UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudom... 522 e-147 UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gam... 522 e-146 UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=B... 522 e-146 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 522 e-146 UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Ka... 522 e-146 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 521 e-146 UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponem... 521 e-146 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 521 e-146 Sequences not found previously or not previously below threshold: UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 534 e-150 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 532 e-149 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 530 e-149 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 529 e-148 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 528 e-148 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 528 e-148 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 524 e-147 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 523 e-147 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 522 e-147 >UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammaproteobacteria RepID=SRMB_ECOLI Length = 444 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL Sbjct: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA Sbjct: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH Sbjct: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 Query: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 RDTKNIGKRRKPSGTGVPPQTTEE Sbjct: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 143/392 (36%), Positives = 225/392 (57%), Gaps = 7/392 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++++F L+ +L+A+ D GF P+ IQAA IP L+GRDV+G A TGTGKTAA+ +P Sbjct: 15 SMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++ + PR + ++LTPTRELA+QV+ R++AK+ + I GG + ++ Sbjct: 75 LVERVSTEPR-----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIR 129 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + IV+ T GR+L +I V ++LDEAD MLDMGF DIE I ET Sbjct: 130 ALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSD 189 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT + ++ A R + DP ++ N +I Q Y+ + +K L Sbjct: 190 RQTMLFSATFPNE-VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLE-RNKLDSLCR 247 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + I+F R + V +L L G L G++ Q +R+ +++ + + + Sbjct: 248 IVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIEL 307 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ DV+HV N+D+P+ ++Y+HRIGRT RAG++G AI+LV ++ LL Sbjct: 308 LVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLK 367 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 ++ R I++ I R + L +E K Sbjct: 368 QIEREIKQKITVREVPSLEDVAERQAEMWRSK 399 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 175/438 (39%), Positives = 244/438 (55%), Gaps = 1/438 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L+ ++L A+++ G+T PT IQA AIP ++G D++ SA TGTGKTA ++LPAL Sbjct: 1 MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L +S PRIL+LTPTRELA QV++ AR+ K +I GG+ Y ++ Sbjct: 61 NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 S+ DI+VAT GRLL +++ D ++ LILDEADRMLDMGF D+E I + +Q Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSATL+GD I A+++L++P V + I Q + DD+ HK LL HLL Sbjct: 181 TLLFSATLDGD-IARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 PE ++I+F + LA L AG L G+M QG RN + +L G V VLV Sbjct: 240 IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGID+ ++HV N+D+P+ + Y+HRIGRT RA G AIS D LL K+ Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 +Y ++A VI+ PK + +G A K+++ + Sbjct: 360 EQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGGFKSRDDRGGFGGRDGNRG 419 Query: 424 KNIGKRRKPSGTGVPPQT 441 N G R S + Sbjct: 420 DNRGGSRHESRGDNRSER 437 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 166/430 (38%), Positives = 238/430 (55%), Gaps = 22/430 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSE L + LL A++ G+ PT +Q +IP L+GRD++G A TGTGKTAA+ LP L Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L R + R L+LTPTRELA+Q+ D+ ++ ++ HL + GG Sbjct: 124 LTLLKRPR---VRALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRR 180 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 DI+VAT GRLL ++ ++ D +VE L+LDEADRMLDMGF D+ I T ++QTL Sbjct: 181 GADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTL 240 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 +FSAT+E + ++ A+R+L+DPV+V P + Q + E K ++ LL Sbjct: 241 MFSATMEKE-VRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSR-EDKREIIASLLTD 298 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +IVF R + +L+ L+ GI + + G+ QG+R +A+ R G+V V+VAT Sbjct: 299 EAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVAT 358 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DIP +SHVFN+D+P Y+HRIGRT RAG G AI+L + L +V Sbjct: 359 DVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEE 418 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKN 425 +E+PI EL+ + P E+ +A K K R R KN Sbjct: 419 LLEKPIP-----ELQTQWSLPLER------------KARKGKGGRTRHGRSGYRSGGQKN 461 Query: 426 IGKRRKPSGT 435 GK +G+ Sbjct: 462 AGKSGHKTGS 471 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 162/439 (36%), Positives = 232/439 (52%), Gaps = 6/439 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS L L + +A+ ++G+ P+ IQA AIP L G+DV+ +A TGTGKTA + LP L Sbjct: 1 MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + L + K+G R L+LTPTRELA QVS+ K+ L A + GGV + Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D++VAT GRLL +++ +E L+LDEADRMLDMGF +DI+ I ++Q Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L+FSAT D I++ A+ L+ PVE+S P + QW D K+ALL+ L+ Sbjct: 181 NLMFSATF-SDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDK-NQKSALLIQLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 KQ + + +VF R + + LA L +A I+ + G QG R +A+ G V VLV Sbjct: 239 KQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARG+DI + V NFD+P + Y+HRIGRT RAG G A+SLV + + LL + Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R I ++ + I+ P P + A ++K + KP R Sbjct: 359 ERLINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTP----RTG 414 Query: 424 KNIGKRRKPSGTGVPPQTT 442 R+ P Q Sbjct: 415 TGRDGRKTPDSIDGSAQQK 433 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 154/446 (34%), Positives = 236/446 (52%), Gaps = 9/446 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F++L L LL+A+ D G+T PT IQ AIP + G+DV+G A TGTGKTA + LP L Sbjct: 1 MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 64 QHLLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 + + P R LIL PTRELAMQV + + +KH L + GGV Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +IV+AT GRLL ++++++ + VE L+LDEADRMLDMGF DI+ I Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++Q+LLFSAT D I+ A+++L++P + + I + K LL Sbjct: 181 KQRQSLLFSATF-SDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSG-MKRNLL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 HLL+ T+++VFV + LA++L +GI+ + G+ Q +R + ++ G++ Sbjct: 239 AHLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKL 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARG+DI ++ V NF++P + + Y+HRIGRT RAG G AISLV + + Sbjct: 299 RVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHW 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L ++ + I+ I + P G ++ A A+ + + ++R Sbjct: 359 LSEIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRER 418 Query: 420 HRDTKNIGKR---RKPSGTGVPPQTT 442 + +R R+ G P+ Sbjct: 419 GVERSAEARREPAREREGLRAGPRRG 444 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 159/439 (36%), Positives = 240/439 (54%), Gaps = 5/439 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F+ L L E +L+A++ +G+ +P+ IQ A+P L G+DV+ +A TGTGKTA + LP L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + L PR + R L+LTPTRELA QV+ + + L + GGV + Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D++VAT GRLL + +E L+LDEADRMLDMGF +DI I ++Q Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT D I+ A+ L+ +PVE+S +P+ + Q Y D + K +L L+ Sbjct: 181 NLLFSATFSDD-IRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDK-KKKAPMLAKLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K + + +VF + + ++LA +L E I + + G QG R +A++ G+V VLV Sbjct: 239 KDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGIDIP + V NFD+P + Y+HRIGRT RAG G AISLV A + L + Sbjct: 299 ATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R I++ ++ R ++ P + P + +P K K+ + ++ + Sbjct: 359 ERLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAG 418 Query: 424 KNIGKRRKPSGTGVPPQTT 442 KN +R +G G P+ Sbjct: 419 KN---KRHVAGNGSAPKRK 434 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 158/434 (36%), Positives = 231/434 (53%), Gaps = 9/434 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L L +L A+ D+G+ PT IQA IP L G+DV+ SA TGTGKTA + LP L Sbjct: 5 VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 64 QHLLDFPRKK----SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L + P R LI+ PTRELAMQ+ + R+ K+ L A + GG+ Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQ 124 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +I+VAT GRLL ++++ + E L+LDEADRMLDMGF DI+ + Sbjct: 125 IAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLS 184 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++Q+L+FSAT G+ I+ A+ LL+ PV + A + I + + K ALL Sbjct: 185 PQRQSLMFSATFSGE-IRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKP-DSKFALL 242 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +HL++Q ++++FV+ + LA L I+ + G+ Q +R +A+ G V Sbjct: 243 LHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDV 302 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVAARGIDI +SHV N+++P + + Y+HRIGRT RAG KG AISLV H+ L Sbjct: 303 QILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKEL 362 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L + + + ++ I + A S ++ K EK R +K Sbjct: 363 LANIEKLLNAKLETEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKSRSEKH 422 Query: 420 HR---DTKNIGKRR 430 + K G RR Sbjct: 423 RKLPSSQKYSGSRR 436 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 582 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 139/390 (35%), Positives = 215/390 (55%), Gaps = 12/390 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T+F +L LD +L AL++ GF P+ IQ AIP AL+G D++G A TGTGKTAA+ +P Sbjct: 17 EITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP 76 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 +Q + +K + L+++PTREL +QV+D ++ K + + + GG Sbjct: 77 IIQKI----NEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIR 132 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +V+ T GRLL +I+ D V L+LDEAD MLDMGF D+E+I Sbjct: 133 SLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPE 192 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ I +++ + P V+ + I Q+YY + K L Sbjct: 193 RQTMLFSATMPRP-ILSISKKYMRAPKVVAIHKEVVTAPTIDQYYY---ETRDKVDGLCR 248 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L + + I+F R ++ V EL L G L G++ Q +R+ +K+ G+V++ Sbjct: 249 ILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDI 308 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI +++HV NFD+P ++Y+HRIGRT RAG G A++ + + L Sbjct: 309 LVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLK 368 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQT 391 + R IK ++I P + E+Q Sbjct: 369 LIER----SIKTKIIRGTLPTDASVLERQR 394 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 135/378 (35%), Positives = 215/378 (56%), Gaps = 7/378 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F + ++ + +A++D GF P+ IQ IP L G DV+G A TGTGKTAA+ +P Sbjct: 1 MMKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L+ + + LILTPTRELA+QV+ ++L+K I I GG + + + Sbjct: 61 LEKVTSD-----RQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR+L ++ + R+V TLILDEAD MLDMGF +DIE I + + Sbjct: 116 LKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNR 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I+ + + + +P +V+ + I+Q Y++ + ++K L + Sbjct: 176 QTMLFSATMPPP-IRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLE-KNKLDSLCRV 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + I+F R ++ V EL L+ G L G++ Q +R+ +K+ + + L Sbjct: 234 IDSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFL 293 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARGID+ +VSHV N+D+P+ ++Y+HRIGRT RAGR+G A++LV + L Sbjct: 294 IATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRS 353 Query: 363 VGRYIEEPIKARVIDELR 380 + I+ I ++ I + Sbjct: 354 IEAEIKMTIPSQRIPSVE 371 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 212/388 (54%), Gaps = 6/388 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E+EL + +A+ D GF P+ IQA AIP + G+D++G A TGTGKTA + +P + Sbjct: 20 FGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAET 79 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L + G + L+L PTRELA+QV+ ++ + L + GG + Sbjct: 80 L----NPRDGRVQALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRY 135 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +V+ T GR+L ++ + V ++LDEAD MLDMGF +DIE I ET +QTL Sbjct: 136 GVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTL 195 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ G IQ A + +++P V+ + I Q YY + K L +L Sbjct: 196 LFSATMPGP-IQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKE-SQKVDALCRILDM 253 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 E SI+F R + V EL L G L G++ Q +R+ +K+ +G+ +L+AT Sbjct: 254 EEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIAT 313 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ +V+HV N+D+P+ ++Y+HRIGRT RAGRKG AI+L+ ++ L + R Sbjct: 314 DVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIER 373 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGK 393 + I+ R + + E K Sbjct: 374 VTKARIQRRDLPSMADIVERQKEAHKMK 401 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 209/383 (54%), Gaps = 6/383 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF EL L + +++A++ GF T IQA IP +L +DV+G A TGTGKTAA+ +P Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + K+ + L++ PTRELA+QVS+ ++ + + I GG Sbjct: 61 VEKV----NVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++ ++V T GR++ +I V T++LDEAD ML+MGF +DIE I + Sbjct: 117 LKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ D I+ AER + +P V I Q+Y + + K +L L Sbjct: 177 QTLLFSATMP-DPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHE-KKKFDILTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +IVF R + RV ELA L G + G++ Q KR +++ EG + +L Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+ G A++ V + L Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354 Query: 363 VGRYIEEPIKARVIDELRPKTRA 385 + R + ++ L Sbjct: 355 IERTTKRKMERMKPPTLDEALEG 377 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 164/403 (40%), Positives = 227/403 (56%), Gaps = 6/403 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F +L L E L+ AL +T PTAIQ AIPPA+ GRD+ G A TGTGKTAA+ LP L Sbjct: 1 MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60 Query: 64 QHLLDFPRK---KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L+ PR+ + PR L+L+PTRELA Q+ D R +H + TI GGV+ + Sbjct: 61 DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQV 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + QD+++AT GRL +++ + +E +LDEADRMLDMGF DI I + Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +KQTLLFSAT+ + IQ A +LL DPVE++ P I Q Y +HK LL Sbjct: 181 QKQTLLFSATMPPE-IQKLASQLLHDPVEINIEPERATADGITQSLYYVP-TKHKPELLA 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +LK+ E TR++VFVR + ++ A L + G+ + G Q R + G + Sbjct: 239 SVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQ 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ VSHV N+D+P +TY+HRIGRT RAG+ G AIS + LL Sbjct: 299 VLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLL 358 Query: 361 GKVGRYIEEPIKAR-VIDELRPKTRAPSEKQTGKPSKKVLAKR 402 V R + + I + + P A ++ G K+ Sbjct: 359 RDVQRILGKKIPVENEMPDGIPGLPANIDRDGGAKRAPWGNKK 401 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 577 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 158/451 (35%), Positives = 227/451 (50%), Gaps = 10/451 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T+ +F +L L E LL+AL ++G+T PT IQ AIP LD RD+LG A TGTGKTAA+ + Sbjct: 24 LTILSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAI 83 Query: 61 PALQHL----LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 P LQ + RK + LILTPTRELA+Q+ + K L I GGV+ Sbjct: 84 PLLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQ 143 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 E + DI++AT GRLL I + R ++ +LDEADRMLDMGF D++ + Sbjct: 144 HPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIV 203 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLL-EDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 + ++Q+L FSAT+ + IQ A+ +L +P +V P + + I Q Y + + K Sbjct: 204 KLPEQRQSLFFSATMPPE-IQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKND-K 261 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL+H+LK +VF R + + L +A I + G Q R A+ Sbjct: 262 RNLLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFK 321 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 + VLVATD+AARGIDI +++HV N+++P +TY+HRIGRT RAG G AIS E Sbjct: 322 SQQTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPE 381 Query: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + L + + I I P +K + KK + Sbjct: 382 EKAFLKDILKLISREIPVETEHPFHNGDSMALPAPKPAPQQKPKQQHPRDKKGGFSRNRQ 441 Query: 416 VKKRHRDTKNIGKRRKPS---GTGVPPQTTE 443 + RD + KP+ G PQ + Sbjct: 442 GVVQSRDARPGAGAGKPNSGKPNGGRPQGGK 472 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 157/443 (35%), Positives = 231/443 (52%), Gaps = 19/443 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L +L A+ ++G+ PT IQ AIP L+GRD++ SA TGTGKTA + LP L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 64 QHLLD-FPRKKSGPP-RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 QHL+ P K P R LILTPTRELA Q+ ++ R+ +K+ ++ + GGV+ Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRLL + VE L+LDEADRMLDMGF DI + + + Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q LLFSAT D I+ AE+LL +P+E+ ++ Q + D + K LL H Sbjct: 181 RQNLLFSATFSDD-IKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDK-KRKRELLSH 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + + +VF R + + LA L + GI + + G QG R A+ G + V Sbjct: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARG+DI ++ HV N+++P + Y+HRIGRT RA G A+SLV +H LL Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEK---------------QTGKPSKKVLAKRAEKK 406 + + +++ I I P +E G+ ++ K Sbjct: 359 DIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAK 418 Query: 407 KAKEKEKPRVKKRHRDTKNIGKR 429 A K + +R D K G++ Sbjct: 419 SASAKPAEKPSRRLGDAKPAGEQ 441 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 151/444 (34%), Positives = 229/444 (51%), Gaps = 7/444 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF + L +L A+ ++G+T PT IQA AIP L GRDV+G+A TGTGKTA++ LP +Q Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161 Query: 65 HLLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LL + P R LILTPTRELA QV+ + AKHT L A + GGV Sbjct: 162 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 221 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I++AT GRLL +++++ + V+ L+LDEADRMLDMGF D++ I Sbjct: 222 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 281 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLFSAT + I+ A L +P + S + Q Y + + K A +V Sbjct: 282 ERQTLLFSATFSPE-IKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGD-KQAAVV 339 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L++ + IVF + LA + GI + G+ Q +R +A+ G + Sbjct: 340 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATDVAARG+DI ++ V NFD+P + + Y+HRIGRT RAG G A+SL ++ L Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I+ + ++ P+ R + + + +++ E+ +R Sbjct: 460 ADIEKLIKRTLSLETLELDLPRHRHDERGGRRERERDERRGASAGRRSAGGERAHHPRRE 519 Query: 421 RDTKNIGKRR-KPSGTGVPPQTTE 443 + + PS + P+ + Sbjct: 520 APIDDFFLKPYVPSSSANQPEEAK 543 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 143/382 (37%), Positives = 204/382 (53%), Gaps = 7/382 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF+E + E LL+A+ D GF PT IQA AIP LDG+DV G A TGTGKTAA+ +P + Sbjct: 5 KTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPII 64 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 + L + + L+L+PTRELA+Q ++ L K+ L++ I GG Sbjct: 65 ERL----DPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +V+ T GR++ +IK +V ILDEAD+MLDMGF +DIE I +T + Sbjct: 121 LKGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I D R DP V +I Q Y + + K L Sbjct: 181 QTILFSATMPQP-ILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERD-KLEALCRT 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++VF + V +L + ++ G L G+M Q +R+ + R G ++VL Sbjct: 239 LDMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARGID+ DV VFN+D+P+ + Y+HRIGRTARAGR G +++ V + L Sbjct: 299 IATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRD 358 Query: 363 VGRYIEEPIKARVIDELRPKTR 384 + RY + I + L Sbjct: 359 IQRYAKIQIAKTPLPTLDDVAE 380 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 180/446 (40%), Positives = 249/446 (55%), Gaps = 8/446 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FSEL LD +L+++ G+ T +Q AIP AL G D+L S+ TG+GKTAA+LLP++ Sbjct: 1 MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 Q LL P KS PR+L+LTPTRELA+QV A K A + GG Y + Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 S+ D+VVAT GRL+ +++ D +E L+LDEADRMLDMGF DI+ IA + Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATL+G + + A L D + + KI Q AD+++HK LL L Sbjct: 181 QTLLFSATLDG-VVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDAL 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ E ++IVF + E+++ L E+G + L G+M QG+RN A++RL EGR VL Sbjct: 240 LRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ +SHV NFD+PR + Y+HRIGRT RAGR G A+S + L+ Sbjct: 300 VATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKN 359 Query: 363 VGRYIEEPIKARVIDELRPKTRAPS-EKQTGKPSKKVLAKRAEKKKAKEKEKP-----RV 416 + RY I+ + L P R + G+P EK+ ++ +P R Sbjct: 360 IERYTGNRIEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKRSFGDRSEPRSYGDRP 419 Query: 417 KKRHRDTKNIGKRRKPSGTGVPPQTT 442 + RD ++ G R P Sbjct: 420 RGDSRDNRDRGYRGDARRNDGAPARR 445 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 146/383 (38%), Positives = 211/383 (55%), Gaps = 6/383 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF EL L +SLL++++ GF T IQA IP AL G+D++G A TGTGKTAA+ LP Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + + +++ PTRELA+QV + ++ KH + I I GG Sbjct: 61 LDKVDTHKE----SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++ I+V T GR+L +I + + VET++LDEAD ML+MGF +DIE I + Sbjct: 117 LKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ D I+ AER + +P + I Q+Y + + K +L L Sbjct: 177 QTLLFSATMP-DPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +IVF R + RV EL+ L G + G++ Q KR +++ EG + VL Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+KG A+ V + L Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354 Query: 363 VGRYIEEPIKARVIDELRPKTRA 385 + R + + L Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 162/437 (37%), Positives = 234/437 (53%), Gaps = 21/437 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF EL+L ++L+A+ ++G+ PT IQA AIP L G D+LG A TGTGKTAA+ LP L Sbjct: 1 MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60 Query: 64 QHLLDFPR----KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 Q L PR + R LI+TPTRELA QV + R K+ L + GGV Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DI+VAT GRLL + + D V+ L+LDEADRMLDMGF DI+ + Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 KQ+LLFSAT D I++ A LL DP+ + P ++I Q + + K ALL Sbjct: 181 KHKQSLLFSATF-SDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKK-ALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H++ + ++ +VF R + + +A L + GI L G Q R +A++ +G + Sbjct: 239 THIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 LVATD+AARGIDI ++ HV N+++P + Y+HRIGRT RAG G A+SLV + Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGF 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEK----------QTGKPSKKVLAKRAEKKKAK 409 + + R+ ++ I+ ++ + +E GKP + + + A K Sbjct: 359 MQDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARS 418 Query: 410 EKEKPRVKKRHRDTKNI 426 E + +R RDTK Sbjct: 419 E-----MMQRIRDTKGA 430 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 142/378 (37%), Positives = 218/378 (57%), Gaps = 5/378 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F +L L ESLL+A++D GF P+ IQA +IP AL+G D++G A TGTGKTAA+ Sbjct: 1 MNNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGC 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + + +KKS P+ LIL PTRELA+QV++ L KH L + I GG Sbjct: 61 AIINNADFSGKKKS--PKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQI 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 DIVV T GR+L I+ ++ + L+LDEAD ML+MGF D+E I + Sbjct: 119 RALKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKT 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSAT+ I+ A ++ D ++ S+ KI Q+Y+ + + L Sbjct: 179 DRQTLLFSATMP-PQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRD-RFETL 236 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L E +I+F + ++ V E+ ++ G + G+M Q R + +++ EG + Sbjct: 237 CRVLDFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSL 296 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 + LVATDVAARGID+ V+HV N+D+P+ ++Y+HRIGRT RA R+G A SLV ++++ Sbjct: 297 DFLVATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMM 356 Query: 360 LGKVGRYIEEPIKARVID 377 L ++ ++ + I + + Sbjct: 357 LKQIQKHTKSKIIRKAVP 374 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 572 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 154/442 (34%), Positives = 236/442 (53%), Gaps = 5/442 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++T+FS L L E ++ AL + PT IQA AIP L GRD++G A TGTGKTAA+ LP Sbjct: 35 SLTSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALP 94 Query: 62 ALQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L L+ P R + R L+L+PTREL+ Q+ ++ + +H ++ ++ GGV Sbjct: 95 ILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQI 154 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S D++VAT GRL+ ++ VE L+LDEAD+MLDMGF I I Sbjct: 155 RALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPH 214 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++ +L FSAT+ AI + A +L DPV V+ P + ++ Q D +K LL Sbjct: 215 KRHSLFFSATMPH-AIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKA-NKGQLLA 272 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L + R++VF R + ++ L +AGI + G Q +R+ + EG++ Sbjct: 273 EVLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIR 332 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATD+AARGID+ VSHV NFD+P ++Y+HRIGRTARAGR+G AIS + + L Sbjct: 333 TLIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFL 392 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK-R 419 + + I+ + + + P + + ++R++ ++ PR ++ R Sbjct: 393 RSIEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRPR 452 Query: 420 HRD-TKNIGKRRKPSGTGVPPQ 440 H D G+ R P PQ Sbjct: 453 HGDERSGEGRSRAPRSEEGRPQ 474 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 572 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 140/379 (36%), Positives = 226/379 (59%), Gaps = 8/379 (2%) Query: 1 MT-VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYL 59 MT + TF+EL L + +L+A+ D GF P+ IQ+ +IP ++G D++G A TGTGKTAA+ Sbjct: 1 MTKIKTFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFG 60 Query: 60 LPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L ++ +K P+ LIL PTRELA+QV++ +AK+ L+I I GG Sbjct: 61 SIILNNM----SEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DIVV T GR+L +++ ++ + V+ L+LDEAD ML+MGF DIE + Sbjct: 117 LRALRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLN 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +QTLLFSAT+ DAI+ ++R ++ D +S +T I Q+YY + + + Sbjct: 177 EDRQTLLFSATMP-DAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSD-RFES 234 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L ++ E +I+F + ++ V EL + ++ G + G+M Q +R +K+ E Sbjct: 235 LCRIIDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESN 294 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++ LVATDVAARGID+ +V+HV N+D+P+ ++Y+HRIGRT RA ++G A +LV +++ Sbjct: 295 LDFLVATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYI 354 Query: 359 LLGKVGRYIEEPIKARVID 377 +L ++ + + IK + Sbjct: 355 VLKQIEKTTKSKIKRNSVP 373 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 572 bits (1476), Expect = e-162, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 216/387 (55%), Gaps = 6/387 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++ L + +L+A+ + GF P+ IQ AIP L+ D++G A TGTGKTA++ +P Sbjct: 2 IENFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPI 61 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + K S + ++L PTREL++QV++ +LAK+ + + I GG Sbjct: 62 VEKV----NKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRS 117 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++V T GR++ +IK + ++T +LDEAD M DMGF +DIE I G + + Sbjct: 118 LKMGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYER 177 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT FSAT++ + + DFA R +P + P K+ Q YY A K +L + Sbjct: 178 QTTFFSATMDHE-MMDFAARYQSEPRLIKVVPKELTVPKVTQ-YYFALKHNMKLEILSRI 235 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++VF ++ V +L L+ G L G++ Q +R+ + + +++L Sbjct: 236 LDVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDIL 295 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ DV V N+DMP+ + Y+HRIGRTARAGR+GTAIS V + L + Sbjct: 296 VATDVAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQ 355 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEK 389 + +Y + I+ R + L+ + E+ Sbjct: 356 IQKYTKTKIEKRDMPTLKDLIKRHEER 382 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 158/435 (36%), Positives = 230/435 (52%), Gaps = 6/435 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF +L+L +L A+ D+G+ PT IQA IPP L G+DV+ SA TGTGKTA + LP Sbjct: 3 SDVTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLP 62 Query: 62 ALQHLLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 L HL + P R LI+ PTRELAMQ+ + R+ K+ L + GGV Sbjct: 63 LLHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIE 122 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +I+VAT GRLL ++ + + E L+LDEADRMLDMGF DI+ + Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMAL 182 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 ++Q+L+FSAT D I+ A+ LL+ PV + + I +R E K A Sbjct: 183 LPSQRQSLMFSATF-SDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKP-ESKFA 240 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL+HL+KQ + +++VFV+ + +LA L I + G+ Q +R +A+ G Sbjct: 241 LLLHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHG 300 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 V +LVATDVAARGIDI +SHV N+++P + + Y+HRIGRT RAG KG AISLV H+ Sbjct: 301 DVQILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHET 360 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 LL + + + ++ I + S +A+R+ K+ + K Sbjct: 361 ELLTSIEKLLNTKLEIEQIAGFDAELFVRSLPDRKNRVSADIARRSNKQAEVANGEKTRK 420 Query: 418 KRHRDTKNIGKRRKP 432 + + P Sbjct: 421 YSGSRRSALQNHKDP 435 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 571 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 156/452 (34%), Positives = 240/452 (53%), Gaps = 19/452 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TFS+L+LD + +A+ + G+T+PT IQ AIP LD D+LG A TGTGKTAA+ LP Sbjct: 5 IETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPM 64 Query: 63 LQHLLD-FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + +L+ + PR L+L PTRELA+QV + K+T + A I GGV A+ Sbjct: 65 IHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAK 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+++AT GRL+ + + + +E +LDEADRMLDMGF DI I R Sbjct: 125 AIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKR 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q L FSAT+ + I+ A +L +P+ + P + + I Q + + K LL+H Sbjct: 185 RQNLFFSATMPPE-IEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKN-LLLH 242 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L K ++I+F + + ++++ L ++GI + G Q R A++ G+ Sbjct: 243 LFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRA 302 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGIDI D++HV N+++P +TY+HRIGRTARAG+ G AI++ EA + L+ Sbjct: 303 LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIK 362 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRA-------------EKKKA 408 + + I I +D P A E TGK K + Sbjct: 363 DIEKVIGISIP---VDRDHPYHAARVESHTGKAPKLHGSGGGGNRGQRRPTQSGDSSSGR 419 Query: 409 KEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQ 440 + K+ ++ ++RKPS +G + Sbjct: 420 NRNSQQNSKQNSNRSQGQSEKRKPSDSGYKSE 451 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 144/371 (38%), Positives = 209/371 (56%), Gaps = 5/371 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSEL L + +L+AL ++G+T PT IQ AIP L RD+LG A TGTGKTAA+ +P LQ Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62 Query: 66 LLDFPRKKSGPPR---ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + K +G PR LILTPTRELA+Q+++ +H ++ I GGV+ + Sbjct: 63 LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNT 122 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRLL + + R V+ +LDEADRMLDMGF D++ + + + Sbjct: 123 LKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTHR 182 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q+L FSAT+ D + A+ +L +P +V P + I Q Y E K LLVH+ Sbjct: 183 QSLFFSATMPPD-VAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGK-EDKRKLLVHI 240 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++VF R + ++ L +AGI + G Q R A+ VL Sbjct: 241 LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL 300 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGID+ ++SHV N+++P +TY+HRIGRT RAG G A+S +A + L Sbjct: 301 VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRD 360 Query: 363 VGRYIEEPIKA 373 + + I + + Sbjct: 361 IHKLIGKRVPV 371 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 212/377 (56%), Gaps = 7/377 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L E LL LQ+ G+ P+ IQAA IP L+ RDVLG A TGTGKTA++ LP L Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + K P+ L+L PTRELA+QV++ + A + + I GG +Y Sbjct: 69 I----DIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALR 124 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++++ + D ++T++LDEAD ML MGF D+E I +T +QT Sbjct: 125 RGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQT 184 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ A L DP ++ T I Q Y+ + K L +L+ Sbjct: 185 ALFSATMPS-AIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGM-QKLDALTRILE 242 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + ELA+ L+ G + + G++ Q +R I++L +G++++LVA Sbjct: 243 AENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ +SHV N+D+P ++Y HRIGRT RAGR G AI + + LL + Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362 Query: 365 RYIEEPIKARVIDELRP 381 R +PI + + Sbjct: 363 RATRQPISVLELPSVEA 379 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 157/388 (40%), Positives = 215/388 (55%), Gaps = 2/388 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L E LL A++ +G++ PT IQ AIPP L+G D+LG A TGTGKTAA+ LP LQ Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L + G R+L+LTPTRELA QV++ K+ L A + GGV E Sbjct: 63 LAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRR 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D++VAT GRLL + ++TL+LDEADRMLDMGF DI + R+QTL Sbjct: 123 GVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQTL 182 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ D I A +L PV V + I Q + + K A+L H+LK Sbjct: 183 LFSATMPPD-ILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSD-KRAMLEHVLKD 240 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 P R+IVF R + + + L A I + G QG R A+ +G +VLVAT Sbjct: 241 PALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVAT 300 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARGIDI D+SHV N+D+P ++Y+HRIGRTARAG G A+S ++ + L + R Sbjct: 301 DIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIER 360 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGK 393 I++ + + P Q + Sbjct: 361 LIQKRLPLLADPGVPVFQIDPRPAQQAQ 388 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 155/421 (36%), Positives = 225/421 (53%), Gaps = 16/421 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F EL+L ++L+A+ + G+ PT IQA AIP L+G D+LG A TGTGKTAA+ LP L Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 64 QHLLDFPRKKSG----PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L + R L+LTPTRELA QV + R K+ LD I GGV Sbjct: 61 HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DI+VAT GRLL ++ D V+ LILDEADRMLDMGF D++ I Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 KQ+LLFSAT D I+D A LL++P + P ++I Q + + K ALL Sbjct: 181 KEKQSLLFSATF-SDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKK-ALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H++ + + ++ +VF R + + +A +L + GI L G Q R +A+ G + Sbjct: 239 AHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 LVATD+AARGIDI ++ HV N+++P + Y+HRIGRT RAG G A+S V + Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGF 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEK----------QTGKPSKKVLAKRAEKKKAK 409 + ++ R+ ++ I + ++ P+ +E G+P + + + A K Sbjct: 359 MQEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAART 418 Query: 410 E 410 E Sbjct: 419 E 419 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 147/379 (38%), Positives = 217/379 (57%), Gaps = 9/379 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+ L L ES+++A+ D GFT+P+ IQ +IP L G D++G A TGTGKTAAY L Sbjct: 1 MNDNQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P + + D + LIL PTRELA+QV++ + L+K+ + + GG + Sbjct: 61 PIITKMSDN-----RGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQI 115 Query: 121 EVFSEN-QDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DIVV T GR+L +K + ++E L+LDEAD ML+MGF DI+ I T Sbjct: 116 RALRKGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +QTLLFSAT+ D I A++ ++ D VS S+ KI Q Y+ ++ +H+ Sbjct: 176 SERQTLLFSATMP-DPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINN-KHRLEA 233 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L LL + +I+F R + V EL L+ G + G+M Q R + + EG Sbjct: 234 LCRLLDLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGT 293 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +N+L+ATDVAARGID+ V+HVFN+D+P+ ++Y+HRIGRT RA + GTA SLV D Sbjct: 294 LNLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFS 353 Query: 359 LLGKVGRYIEEPIKARVID 377 +L ++ + I + + Sbjct: 354 MLKQIQNVTKSSITQKPVP 372 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 153/390 (39%), Positives = 218/390 (55%), Gaps = 7/390 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F EL+LDE ++ A+ + GF + IQA AIP A++GRD++G A TGTGKTAA+ + Sbjct: 1 METVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 P LQ + K + +IL PTRELA+QV++ R LAK + I GG + Sbjct: 61 PLLQKV----DPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + IVV T GR++ +++ + V T++LDEAD ML+MGF +D+E I + Sbjct: 117 IRSLKDGTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTL+FSAT+ AI D A + +DPV V K+ Q+YY ++K ++ Sbjct: 177 EERQTLMFSATMPQ-AIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKP-KNKVEVM 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL SIVF + +V EL L+ G L G++ Q +R+ + GR Sbjct: 235 CRLLDMYAPKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRT 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++LVATDVAARGID+ DV VFN+D+P+ + Y+HRIGRT RAGR+G A SLV + Sbjct: 295 DILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYK 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEK 389 L + RY + I + I L T EK Sbjct: 355 LRDIQRYCKTKIIPQAIPSLNDITEIKVEK 384 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 137/379 (36%), Positives = 211/379 (55%), Gaps = 7/379 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ F + L LL+ + +KGF +PT IQ +IP A+ G D++G A TGTGKTA++ + Sbjct: 1 MSFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L ++ K + L+L PTRELA+QV++ L++ + + I GG + Sbjct: 61 PILNRVI-----KGEGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQL 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N +I+V T GRL+ ++ ++ ++LDEAD MLDMGF DI+ I + Sbjct: 116 RSLRRNPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPR 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT LFSATL D +++ + ++ P + R +I Q+YY+ + K L Sbjct: 176 ERQTFLFSATLP-DEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVN-SRRKIETLC 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + S++F R + ELA L G N L G+M Q +R+ + +G Sbjct: 234 RIIDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTK 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATD+AARG+DI V+HVFNFD+P D+Y+HR+GRT RAGR G AI+LVE LL Sbjct: 294 ILVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLL 353 Query: 361 GKVGRYIEEPIKARVIDEL 379 + R+ + I+ ++ L Sbjct: 354 RMIERHTGKRIERALLPTL 372 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 164/456 (35%), Positives = 229/456 (50%), Gaps = 15/456 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ +F++L+L + LL A+ + G+T PT IQ AI P L GRD++ +A TGTGKTA + L Sbjct: 1 MSSISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFAL 60 Query: 61 PALQHLLDFPRKK--SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P LQ L +G PR L+LTPTRELA QV + L H L I GGV Sbjct: 61 PLLQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKP 120 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 E ++ DI++AT GRL+ K+E D VE L+LDEADRMLDMGF +D+ + Sbjct: 121 QIEALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLL 180 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +Q LLFSAT D I+ A+ L DP V +P + + + D K L Sbjct: 181 PAERQNLLFSATFNDD-IKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDR-NRKREL 238 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L HL++ + + +VF R + + LA L + GI + G QG R A+ +G Sbjct: 239 LTHLVESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGS 298 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + VLVATD+AARGIDI ++ V N+++P + Y+HRIGRT RAG G A+SLV + Sbjct: 299 LRVLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELK 358 Query: 359 LLGKVGRYIEEPIKARVIDELR------PKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 LL + +I PI P+ P Q G+ + R ++ K K Sbjct: 359 LLADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKKPHN 418 Query: 413 KPRVKKRHRDTKNIGKR-----RKPSGTGVPPQTTE 443 KP + P PP+ + Sbjct: 419 KPARRADAPTLPMDAPEHDSGAPAPVAEAQPPRQRK 454 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 168/442 (38%), Positives = 237/442 (53%), Gaps = 11/442 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L L A++ G+ PT IQ +IP L+G+D+LG A TGTGKTAA+ LP LQ Sbjct: 3 FEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQR 62 Query: 66 LLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LLD + + R LIL PTRELA+QV D RE A+ T + A I GGV + Sbjct: 63 LLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQKLI 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D++VAT GRLL I ++ + +E +LDEADRMLDMGF DI + +Q Sbjct: 123 RGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQN 182 Query: 185 LLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L FSAT+ + I A +L +PV V P + ++I Q YR D K ALL LL Sbjct: 183 LFFSATMP-EEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDK-RRKGALLKELL 240 Query: 244 -KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + PE + +VF R + ++ L +AGI + G Q +R EA+ ++ VL Sbjct: 241 AEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVL 300 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGID+ DVSHVFN+D+P +T++HRIGRTARAG++G AIS + L Sbjct: 301 VATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLRG 360 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + + I D+ + P +K+T + + R +++A+ + R Sbjct: 361 IEKLTRVKIPEG--DQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRGNR 418 Query: 423 TKNIGKRRKPSGTGVPPQTTEE 444 N GK+ + P +E+ Sbjct: 419 KGNHGKQN----SNNAPHNSEQ 436 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 569 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 139/380 (36%), Positives = 203/380 (53%), Gaps = 7/380 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T TF EL L+E++L+ALQ+ GF +P+ IQA IP L G DV+G A TGTGKTAA+ +P Sbjct: 5 TFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L+ + S + LIL PTRELA+QVS+ L+K + I I GG + Sbjct: 65 VLERI----DTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + IVV T GR++ +++ V ++LDEAD MLDMGF +DIE I + Sbjct: 121 RSLKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPE 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT+LFSAT+ I +R L DP + + + I Q Y+ + K ++ Sbjct: 181 DRQTILFSATMSKP-IMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKP-QAKVEVMT 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+ +VF + +V E+ L+ G + + G++ Q +R+ + + G Sbjct: 239 RLIDMHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTT 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGID+ + V N+D+P + Y+HRIGRT RAG G A SLV + L Sbjct: 299 ILVATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRL 358 Query: 361 GKVGRYIEEPIKARVIDELR 380 + Y + I+ VI Sbjct: 359 KSIESYTKVKIEKGVIPSFE 378 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 569 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 147/432 (34%), Positives = 226/432 (52%), Gaps = 34/432 (7%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF +L L + L++L + G+++PT IQ AIP + G+D++ A TGTGKTAA+ +P + Sbjct: 6 KTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + K + LIL PTRELA+QV+ +EL K+ + + GG + + Sbjct: 66 EKV----NPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFL 121 Query: 124 SENQDIVV-ATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + D+VV T GR+ ++ + V+ +LDEADRML+MGF DIE I + Sbjct: 122 KKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDR 181 Query: 183 QTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 Q LLFSAT+ + I D AE L + + P +KI Q YR + + K L Sbjct: 182 QNLLFSATMPKE-ILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRD-KFKKLTE 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L Q EA + I+F + + ELA L E G N + G+ Q KR + G++ + Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI V V N+ +PR ++Y+HRIGRT RAGR+GTAIS++ + L Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + + I+ + A++KK +K + ++ R Sbjct: 360 NIQKKTKANIE--------------------------VINEAQEKKLSSAQKDKSSQKER 393 Query: 422 DTKNIGKRRKPS 433 ++N +RR+ S Sbjct: 394 SSRNQTRRRQRS 405 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 164/445 (36%), Positives = 237/445 (53%), Gaps = 11/445 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF + L+++LL+AL +G+T+PT IQ AIP + G+D+LG A TGTGKTAA+ LP L Sbjct: 16 TTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPIL 75 Query: 64 QHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + K R+L+L+PTRELA Q+ D + H +A I GGV Y Sbjct: 76 HRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERA 135 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + DI+VA GRLL +I+++N D + E L+LDEAD+MLD+GF + I I ++ Sbjct: 136 LQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKR 195 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q L FSAT+ + I A LL+DPV+V P + ++I Q + K ALL + Sbjct: 196 QNLFFSATMPTE-IGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQG-RKRALLTEM 253 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 PE TR +VF + + ++A +L G+ + G Q +R + +G++ VL Sbjct: 254 FSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVL 313 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGID+ VSHV NF++P + Y+HRIGRTARAG GTAIS V + LL Sbjct: 314 VATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKD 373 Query: 363 VGRYIEEPIKA---RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + + I A R L GK + + E+ + + R + Sbjct: 374 IEKVTRQKIPAIDRRNDKALGQLDATIMATGVGKKATMPEREGGERNEGGRGGRGRSRVP 433 Query: 420 HRD-----TKNIGKRRKPSGTGVPP 439 HRD R++ + G P Sbjct: 434 HRDGVRPEGGGQPHRQRRARPGETP 458 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 138/393 (35%), Positives = 206/393 (52%), Gaps = 7/393 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+ TF + +L L +A++ GF T IQA IP L +DV+G A TGTGKTAA+ + Sbjct: 1 MTI-TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ + +S + +++ PTRELA+QVS+ ++ + + I GG Sbjct: 60 PLVEKI----NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +N I+V T GRLL +I + V T++LDEAD ML+MGF +DIE I Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPA 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 QTLLFSAT+ I+ AER + +P V I Q+Y + K L Sbjct: 176 EHQTLLFSATMPAP-IKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHE-RKKFDTLT 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL +IVF R + RV EL L G + G++ Q KR A+++ +G + Sbjct: 234 RLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIE 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+ G A++ + + +L Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDML 353 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + + + + L + + Sbjct: 354 RAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDR 386 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 169/404 (41%), Positives = 237/404 (58%), Gaps = 20/404 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L LD ++L AL + + PT +QA AIP L GRD+L S+ TG+GKTAA++LPA+Q Sbjct: 60 FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119 Query: 66 LLD-----------------FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDI 107 + + PR P +L+LTPTRELA+QV++ A + ++ + Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVC 179 Query: 108 ATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGF 167 A+I GG+ Y ++ DI+VAT GRLL +I D A++ L+ DEADRMLDMGF Sbjct: 180 ASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGF 239 Query: 168 AQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY 227 A DI+ I T +QTL+FSATL+ I A R L DP + + ++ I Q + Sbjct: 240 ADDIDAIVNATPATRQTLMFSATLDA-RIAQLASRQLRDPQRIEIAAARADQSHIEQRLH 298 Query: 228 RADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 287 DD+ HK LL HLL+ ++IVF + LA L + G + L G+M QG R Sbjct: 299 FTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGAR 358 Query: 288 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 347 N + L G + VLVATDVAARGID+PD++HV NFD+P+ + Y+HRIGRT RAGR GT Sbjct: 359 NRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGT 418 Query: 348 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQT 391 AI+LV +D ++ R+ + I A VI+ L P+ R+P + Sbjct: 419 AINLVNHNDMFQWKRIERFTNQRIDASVIEGLEPR-RSPKPRSN 461 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 144/377 (38%), Positives = 208/377 (55%), Gaps = 3/377 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FS+ +L +L+AL +G+ PT IQA AIP ++G D+LG A TGTGKTAA+ LP Sbjct: 1 MTKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPL 60 Query: 63 LQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL P G R L++ PTRELA Q+++ + + L + + GGV Sbjct: 61 LHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRL+ +++ D VE L+LDEAD+MLD+GF + IA Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTL FSAT+ + + A + L +P +VS + +++ Q + K LL+ Sbjct: 181 RQTLFFSATMPSN-VSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQA-QKGPLLLV 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ R++VF R + ++ + L AGI + G Q +R A+ G V Sbjct: 239 NLQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+P VSHVFN+++P + Y+HRIGRTARAGR+G AIS V + L Sbjct: 299 LVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLL 358 Query: 362 KVGRYIEEPIKARVIDE 378 + R I I + E Sbjct: 359 DIQRQIRMKIPIVDLPE 375 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 168/440 (38%), Positives = 245/440 (55%), Gaps = 10/440 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF +L L SLL L+ +G+ PT IQA AIP L+ D+LG A TGTGKTAA+ LP Sbjct: 1 MTTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L H+L R+L+L+PTRELA Q++D + +K L IATI GGV Y + Sbjct: 61 LHHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYK 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DI+VAT GRL+ +I+++ D +AVE L+LDEAD+MLDMGF + I +A + Sbjct: 121 ALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQ 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q L FSAT+ + I A LL +P +V P +++ Q + + K ALL Sbjct: 181 RQNLFFSATMPKE-IAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQ-QRKRALLSE 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + R+++F R + +A +L+ G+ + G+ Q +R A++ GRV Sbjct: 239 LYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRA 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+ +V+HV N+++P + Y+HRIGRTARAG++G +I+LV + LL Sbjct: 299 LVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLK 358 Query: 362 KVGRYIEEPIK---ARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP--RV 416 + R + I R L+ A +G+ K R +K A+ + RV Sbjct: 359 DIERITRQRIPSWDRRKDQALKLLDEAILA--SGQTEKPKTPDRVVEKTARHLDPDAERV 416 Query: 417 KKRHRDTKNIGKRRKPSGTG 436 KR R+ N +RR G Sbjct: 417 HKRSRNRPNRDERRGNGRDG 436 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 143/394 (36%), Positives = 219/394 (55%), Gaps = 7/394 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L + +A++ GFT+P+ IQ IP + G DV+G A TGTGKTAA+ LP L Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 L KS P+ L+L PTRELA+QV++ + A+ ++I I GG Y Sbjct: 193 L----NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLR 248 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++++ + D + ++LDEAD ML+MGF +D+E I +T KQ Sbjct: 249 RGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQV 308 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ ++R L P EV+ + R + I Q Y E K L +L+ Sbjct: 309 ALFSATMPS-AIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHRE-KLDALTRILE 366 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + I+FVR + ELA LR G + G++ Q +R + +L +GR+++LVA Sbjct: 367 VTDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVA 426 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ ++HVFN+D+PR ++Y+HRIGRT RAGR G A+ V + +L + Sbjct: 427 TDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIE 486 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 R + + + + A K + +K + Sbjct: 487 RATKSRLNEIELPSVDQVNEARKAKFNRELTKNL 520 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 210/388 (54%), Gaps = 7/388 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLP 61 + +F L L + +++AL+ KGFT PT IQ AIP ++G RDV+G A TGTGKTAA+ +P Sbjct: 1 MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L+ + + R + LIL PTRELA+QV++ + L++ + GG + Sbjct: 61 ILETIDESSRN----TQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 IVV T GR+L +I V ++LDEAD ML+MGF D+E I Sbjct: 117 ELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTE 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 K+ LLFSATL D+I A+ + + + Q YY + K LL Sbjct: 177 KRMLLFSATLP-DSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRD-KFELLSR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + ++F + + V E+++ L E G L G+M Q +R + + + ++NV Sbjct: 235 IIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINV 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGIDI D++HV N+D+P++ ++Y+HRIGRT RAG++G A++ VE + Sbjct: 295 LVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFK 354 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEK 389 + + I+ + +++ A K Sbjct: 355 YIQKIANTEIRKEEVPDVKDIIGAKKRK 382 >UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteriaceae RepID=C4K3R7_HAMD5 Length = 454 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 306/435 (70%), Positives = 358/435 (82%), Gaps = 3/435 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F E +LD LL AL+DKG+ TAIQ IP A++GRD+LGSAPTGTGKT A+L+ Sbjct: 1 MMSPPFCEFDLDPCLLRALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAFLI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 PALQHL+DFP+KK GPPRILIL PTRELA+QV+D A ELAK+T L +A ITGGVAYMNH Sbjct: 61 PALQHLIDFPKKKPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHT 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E+FS NQDI+VATTGRLLQYIKEENFDCRAVE LILDEADRMLDMGFAQDIE I+ ETRW Sbjct: 121 EIFSTNQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRW 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 RKQTLLFSATLE I++F+ER+L DP+ + A PS RERKKI Q YYR+D+L HK ALL Sbjct: 181 RKQTLLFSATLESATIREFSERVLRDPIYLEAAPSVRERKKILQSYYRSDNLPHKIALLC 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +LLK P +SI+FVR RE+VHEL + L+ GI++ YLEGEMVQ KR EAI RL GR+ Sbjct: 241 YLLKTPSVQKSIIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQ 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVA+RG+DI D+SHVFNFDMP +GD YLHRIGRTARAGRKGTAISL+EAHDHLLL Sbjct: 301 VLVATDVASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHLLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK-- 418 KV RY+++ IK RV+DELRP T+AP+EK+ GKPSKKVLAKR E+KKAK+++ K Sbjct: 361 KKVERYLKKTIKPRVVDELRPTTKAPNEKKAGKPSKKVLAKREEQKKAKKEKTKVKVKVK 420 Query: 419 -RHRDTKNIGKRRKP 432 RHRD KN+GKRR+P Sbjct: 421 IRHRDKKNLGKRREP 435 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 158/425 (37%), Positives = 245/425 (57%), Gaps = 4/425 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ ++F+EL L L L++ G+ +PT IQ+ AIP L G D+L A TGTGKTA++ L Sbjct: 1 MSASSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFAL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ L P P R L+L PTRELA+QV+D+ E + + + ++ GGV N Sbjct: 61 PIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL ++++ +E L+LDEADRMLD+GF I+ I Sbjct: 121 KRLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAAD 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLF+AT ++++ AE L +P ++ P K+I Q+ Y+ D K +L Sbjct: 181 DRQTLLFTAT-ADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVD-YGQKADILS 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + + +++VFVR ++RV EL +L + GIN + GE Q +R + G ++ Sbjct: 239 YLITEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLH 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI + +V N+D+P + Y+HRIGRT RAG G A+SLV + L Sbjct: 299 VLVATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFL 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKK--VLAKRAEKKKAKEKEKPRVKK 418 ++ + I++ IK R + + R + KP K+ AK+ ++KK + + + KK Sbjct: 359 QRIEKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKPAKAKQQKRKKVESYQPDKSKK 418 Query: 419 RHRDT 423 R + Sbjct: 419 AIRPS 423 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 142/378 (37%), Positives = 214/378 (56%), Gaps = 8/378 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FS L L ++LL+++ D GF +P+ IQA AIP A+ G D++G A TGTGKTAA+ Sbjct: 1 MNEIKFSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGC 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + H+ K +IL PTRELA+QV+D + L+K+ L I + GG N Sbjct: 61 GIINHI-----SKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N +IVV T GR+L +IK ++ L+LDEAD ML+MGF D+E I + Sbjct: 116 RALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPS 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSAT+ D I+ A+R ++ D +S ++ I Q ++ + + L Sbjct: 176 ERQTLLFSATMP-DQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSH-KTRFEAL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L + +I+F R ++ V EL ++ G + G+M Q R +K+ EG + Sbjct: 234 CRVLDFDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSL 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 N LVATDVAARGID+ ++HV N+D+P+ ++Y+HRIGRT RA R+G A SLV ++ + Sbjct: 294 NYLVATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSM 353 Query: 360 LGKVGRYIEEPIKARVID 377 L ++ + I + I Sbjct: 354 LKQIKSVTKSDISRKNIP 371 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 564 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 146/400 (36%), Positives = 222/400 (55%), Gaps = 11/400 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L ES+++A+ G+ P+ IQAA IP L+GRDVLG A TGTGKTAA+ LP L + Sbjct: 11 FAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 + K P+ L+L PTRELA+QV++ + + K + + GG Y Sbjct: 71 IDLQQIK----PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALR 126 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IVV T GR++ ++ D ++TL+LDEAD ML MGF D+E + + ++Q Sbjct: 127 RGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQV 186 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ I+ A+ L+DPVEV+ T I Q Y+ + HK L +L+ Sbjct: 187 ALFSATMP-PQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGM-HKLDALTRILE 244 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + ELA+ L+ G+ + G+M Q +R I L EG++++LVA Sbjct: 245 VEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVA 304 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI + +L ++ Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIE 364 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 R +PI+ + P A ++ + K + ++ + Sbjct: 365 RATRQPIEEMQL----PSVEAVNDNRINKFTSRITETLGQ 400 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 159/437 (36%), Positives = 236/437 (54%), Gaps = 8/437 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF L + +L+A+ + GFT P+ +QA AIP L G D++ A TGTGKTAA+ LP Sbjct: 1 MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + + + ++L++TPTRELA QVSD L + + TI GG +Y + Sbjct: 61 MSMIDANQNR----VQLLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGL 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + ++VAT GR+L +K A + ++LDEAD MLDMGF +DIE I + Sbjct: 117 IEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVH 241 QTLLFSAT+ + I+ A ++L +P VS P + I Q YY ++ E + ++ Sbjct: 177 QTLLFSATMP-EPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYE-RDDAMIR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL E +SIVF R ++ V L+ L G L G+M Q +R IK ++ + Sbjct: 235 LLDALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEI 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+++ D+SHVFN+ MP ++Y+HRIGRT RAG+KGTAI+LV + + Sbjct: 295 LVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQ 354 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAK-EKEKPRVKKRH 420 ++G+ + I+ R++ LR K L + A K A E+E + Sbjct: 355 RIGKKVGSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILEEEMDMSQIAL 414 Query: 421 RDTKNIGKRRKPSGTGV 437 + N+ K P G Sbjct: 415 KLLSNLLKENTPVGPDK 431 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 144/376 (38%), Positives = 204/376 (54%), Gaps = 7/376 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L + LL+A+ D GF P+ IQA AIPP LDGRDV+G A TGTGKTAA+ +PAL Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + R + LIL PTRELA+QV++ ++LAK+ + I I GG + Sbjct: 93 IDVQDR----SVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLK 148 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IV+ T GR++ +++ V+ +ILDEAD MLDMGF +DIE I E +QT Sbjct: 149 SGVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQT 208 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I ++ +DPV V I Q Y+ + K ++ L+ Sbjct: 209 ILFSATMSKP-IMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEV-KSKAKVEVMCRLID 266 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF + +V E+ L+ G L G++ Q +RN + + G N+LVA Sbjct: 267 MYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVA 326 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+ DV V NFD+P + Y+HRIGRT RAG+ G A S V + ++ Sbjct: 327 TDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQ 386 Query: 365 RYIEEPIKARVIDELR 380 Y + ++ VI Sbjct: 387 TYTKVKVEKGVIPSFE 402 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 159/459 (34%), Positives = 234/459 (50%), Gaps = 18/459 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+T F L + + ++ L G PT IQ +IP L+GRD++G A TGTGKTAA+ LP Sbjct: 21 TLTNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLP 80 Query: 62 ALQHLL-DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++ LL D R + R LIL PTREL Q+++ ++ + + L I + GGV+ Sbjct: 81 LIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQ 140 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL I AV L+LDEAD+MLD+GF D+ IA Sbjct: 141 LQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 200 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QT+LFSAT+ AI D A L DPV+V P + K+ Q+ + KT LL Sbjct: 201 KRQTMLFSATMPK-AIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + R++VF+R + +L L G + + G QG+R A+K +G + Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATDVAARGIDIP VSHV+N+D+P D Y+HRIGRTARAGR G AI+ + LL Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL----------------AKRAE 404 + R + I + + P ++ R+E Sbjct: 380 RDIERLMGIDITVASGEAPANISGGPRRANGNGNNRNRNGGQGREGQGRGEGRGDQNRSE 439 Query: 405 KKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTE 443 + +++ +PR + + + G+ R+P + + Sbjct: 440 HRGNRQERRPRREGEGSEVRAGGEERRPRPERQTSRNED 478 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 150/419 (35%), Positives = 227/419 (54%), Gaps = 10/419 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF+E L + LL++L + +P+ IQ IP L+G D++ A TGTGKTA + LP L Sbjct: 1 MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L ++K+ R LILTPTRELA Q+ ++ + ++ HL + GG + Sbjct: 61 NSL---SKEKNHSIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAI 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI++AT GRLL Y+ R +E L+LDEADRMLDMGF D+ I + + Sbjct: 118 RSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRI 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSAT+ + IQ+ A +L++P EV I Q+ + K +LV+LL Sbjct: 178 TALFSATMPKE-IQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKK-KVLVNLL 235 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++IVF R + L +L+E I + G+ QG+R A++R ++ +L+ Sbjct: 236 NTESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILI 295 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI D+SHV NFD+P + Y+HRIGRT RA ++G +ISLV + LL + Sbjct: 296 ATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANI 355 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 YI+ I + + P E++ + S R +++ + +K++ + K H Sbjct: 356 ESYIQFQIPLK-----QNLYSLPLERKKKRKSSIHKTTRKKERFSNQKKRSKKKSFHEG 409 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 562 bits (1450), Expect = e-159, Method: Composition-based stats. Identities = 150/442 (33%), Positives = 236/442 (53%), Gaps = 9/442 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F++L L + LL+A+ + G+ PT +QAAAIP L RD++ A TGTGKTA+++LP + Sbjct: 15 MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 +L R ++ PR LIL PTRELA QV+++ + K+ L ++ + GGV Sbjct: 75 D-ILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAAL 133 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+++AT GRLL + + E L++DEADRMLDMGF DIE I + +Q Sbjct: 134 EKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQ 193 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ AI+ A+R L +P ++ + I Q K L +L Sbjct: 194 TLLFSATMP-PAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKK-LCDML 251 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + +I+F ++ V +LA L + G + + G+M Q +R ++R G+++VLV Sbjct: 252 RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 A+D+AARG+D+ +SHVFNFD+P D Y+HRIGRT R G G A++ V D + + Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371 Query: 364 GRYIEEPIKA---RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I R + K+ + KP ++ A + +K ++ E P+ Sbjct: 372 EKLMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKLPED 431 Query: 421 RDT---KNIGKRRKPSGTGVPP 439 R + K + P T P Sbjct: 432 RLDSVESDFPKNQAPRNTASRP 453 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 562 bits (1450), Expect = e-159, Method: Composition-based stats. Identities = 166/438 (37%), Positives = 231/438 (52%), Gaps = 10/438 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L + + +L AL+ G+T PT IQA AIP AL GRD+L SA TG+GKTAA+++P L Sbjct: 44 VTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL 103 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 L + LILTPTRELA QV D R +K L + GG Y Sbjct: 104 DRL-SRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITA 162 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + ++VAT GRLL +I D ++E L+LDEADRMLDMGFA DI I + Sbjct: 163 LKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDR 222 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT++ SAT +G + A ++P VS E I + Y DD +HK LL + Sbjct: 223 QTIMCSATWDGP-VGKIAASFTKNPERVSIK---VESAHIEEKVYYCDDFDHKNRLLDKI 278 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + + + I+F + +LA L+EAG +L G++ Q KRN ++ L G+ +L Sbjct: 279 VCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKIL 338 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+P +SHV N+D+PR + Y+HRIGR RAGR G AISL D L Sbjct: 339 VATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNA 398 Query: 363 VGRYIEEPIKARVIDELRP-KTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK---K 418 + RY++ ++A VI+ + P KT PSE + + + Sbjct: 399 INRYLDRKMEASVIEGMEPKKTYVPSENKGNGRGRGRGRSNGGGNGNGQGRGRSAGGYAG 458 Query: 419 RHRDTKNIGKRRKPSGTG 436 + R +PSG Sbjct: 459 SGASKPSGQGRGRPSGDS 476 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 150/389 (38%), Positives = 221/389 (56%), Gaps = 11/389 (2%) Query: 17 EALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGP 76 A++ GF P+ IQAA IP GRDV+G A TGTGKTAA+ LP L L +K Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKK---- 222 Query: 77 PRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATTG 135 P+ L+L+PTRELA+QV+D +E A H + + I GG +Y IVV T G Sbjct: 223 PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPG 282 Query: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195 R++ +++ + D ++ L+LDEAD ML+MGF +D+E I +T KQT LFSAT+ + Sbjct: 283 RVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPA-S 341 Query: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255 I+ +++ LEDP EV+ R IHQ Y + +K L +L+ E I+F Sbjct: 342 IRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHH-YKLDALTRILEVTEFDAMIMFA 400 Query: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 R ++ ELA LR G + + G+M Q +R + +L +GR+++LVATDVAARG+D+ Sbjct: 401 RTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVE 460 Query: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375 +SHV N+D+P ++Y+HRIGRT RAGR G AI V + LL + R + I+ Sbjct: 461 RISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQ 520 Query: 376 IDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + P +E + K ++ + A+ Sbjct: 521 L----PTVDEVNETRKAKFAQSITESLAD 545 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 232/485 (47%), Gaps = 50/485 (10%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT +F EL L LL+A++D GF P+ IQ A+P L G D G A TGTGKTAA+ L Sbjct: 1 MT-ASFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 P L L + LIL PTRELA+QV++ +LA H + I I GG Sbjct: 60 PILDKLTPE-----RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQ 114 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++ +VV T GR++ ++K +LDEAD MLDMGF +DIE I +T Sbjct: 115 LRALAKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTP 174 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 Q +LFSAT+ AI++ ++R L +P ++ I Q YY K L Sbjct: 175 ASCQRVLFSATVP-PAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPH-QKMDAL 232 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL +++VF + E+ L++ G + L G + Q +R+ ++R + Sbjct: 233 CRLLDSRAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGL 292 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATDVAARG+D+ DV V N+D+P + Y+HRIGRT RAGR G+A + V +H Sbjct: 293 DVLVATDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYK 352 Query: 360 LGKVGRYIEEPIK---------------ARVIDELRPKTRA------------------P 386 + + R I +R++DE+R + P Sbjct: 353 MRDIIRCTRARITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFP 412 Query: 387 SEKQTGKPSKKVLAKRAEKKKAKEKEKP--------RVKKRHRDTKNIGKRRKPSGTGVP 438 + T + L K ++ +++KP +++++D RR+P G Sbjct: 413 DGEITSRDVSAALFKLLMQRDFGDQDKPLDQDPLALEPRRQYKDRDGAPGRREPGKPGAR 472 Query: 439 PQTTE 443 PQ E Sbjct: 473 PQRRE 477 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 152/371 (40%), Positives = 217/371 (58%), Gaps = 2/371 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M++ F + L+ S+L AL++ G+ PTAIQAAAIP A+ G+D+L +A TGTGKTAA+ L Sbjct: 1 MSLINFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFAL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L L + PR LILTPTRELA+Q+ ++ R A++ L I GGV Sbjct: 61 PILHRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++ N DI+VAT GRL+ + ++T +LDEADRMLDMGF DI I Sbjct: 121 KMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPR 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 QTLLFSATL + I+ A R+L +PV + P + I Q + +K LL Sbjct: 181 DHQTLLFSATLSPE-IEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQ-NNKRELLH 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L K+ + R++VF R ++R + +A L GI+ + Q R A+ G++N Sbjct: 239 NLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKIN 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATD+AARGID+ +SHV N+++P + Y+HRIGRTARAG GTA+S +A + +L Sbjct: 299 VLVATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRML 358 Query: 361 GKVGRYIEEPI 371 + + + I Sbjct: 359 KGIEKLTKSSI 369 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 156/447 (34%), Positives = 224/447 (50%), Gaps = 10/447 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L +SL+ ++ G+ PT IQA A+P ++G D++G A TGTGKTAA+LLP L Sbjct: 1 MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+ P ++ PR LIL PTRELA Q+ + + T L I GGV Sbjct: 61 HRLITNP-ARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRAL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D++VA GRLL ++ + N +ETL+LDEAD M DMGF DI+ I ++Q Sbjct: 120 RQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ AI A L DPV V + Y K LL+HLL Sbjct: 180 TLLFSATMP-PAISGLAAETLTDPVTVRIGH-LAPLSTVEHAIYPVSH-NQKAPLLLHLL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + IVF R + R LA L +G L+G + Q +R A+ G +LV Sbjct: 237 GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ V+HV NFD+P + + Y HRIGRT RA R G A + V D ++ + Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAI 356 Query: 364 GRYIEEPIKARVIDELRP-----KTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 ++++P+ R ++ P + AP+ + +P + A R ++++ R Sbjct: 357 ESHMKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYG 416 Query: 419 -RHRDTKNIGKRRKPSGTGVPPQTTEE 444 R R + G R + P Sbjct: 417 DRPRGPRPEGARADSARDDRPRSDRPR 443 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 237/412 (57%), Gaps = 12/412 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSEL + E + +AL G+ PTAIQ AIP L G+D+LGSA TGTGKTAA+ +P LQ Sbjct: 3 FSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQK 62 Query: 66 LLDFPRKK-SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + + K + LILTPTRELA+Q+ ++ + AK+ ++ TI GGV+ E Sbjct: 63 IYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEALK 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+V+AT GRLL + ++ + V L+LDEAD+MLDMGF +D+ I +T ++QT Sbjct: 123 RGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKRQT 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I+ ++++L +P ++ P T+ I Q Y + +KT LL+ L+ Sbjct: 183 MLFSATMPKQ-IEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKA-NKTLLLIDLIY 240 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +VF + + ++L L GI + + G Q R A+ +G+ +LVA Sbjct: 241 TLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILVA 300 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGIDI + +V NF++P +TY+HRIGRT RAG G A+SLV+ + LL +V Sbjct: 301 TDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQVE 360 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 ++I I+A + Q+ ++V+ + + +K++EKP+ Sbjct: 361 KHINSKIEAVGHKY---------QIQSQPKQREVITDKLKTDTSKKQEKPKK 403 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 149/435 (34%), Positives = 219/435 (50%), Gaps = 6/435 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + FS L L L+ AL D+G+ PT IQAAAIP AL G D+L +A TGTGKTAA++LP+ Sbjct: 25 MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 84 Query: 63 LQHLLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 L+ L + + P R+L+LTPTRELA Q+ + + K+ L + GGV Sbjct: 85 LELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 144 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 +IVVAT GRLL ++K++N + VE ++LDEADRMLDMGF DI I Sbjct: 145 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 204 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++QTLLFSAT I+ A+ + P V + Q D L K +L Sbjct: 205 PKQRQTLLFSATF-SPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDAL-KKRSL 262 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L L+ + IVF + ++ V ++ L I + G+ Q R E + EG Sbjct: 263 LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGT 322 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + VLVATDVAARG+DI ++ V N+++P + Y+HRIGRT RAG G AISL++ + Sbjct: 323 LRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQK 382 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 + + + I+ P + + ++ + K K Sbjct: 383 MFEAIKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEYANK 442 Query: 419 RHRDTKNIGKRRKPS 433 +++K ++ P Sbjct: 443 SDKNSKKAEEKNDPG 457 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 156/406 (38%), Positives = 232/406 (57%), Gaps = 7/406 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF++L L +LEAL D G+ +P+ IQA IP L+GRDVLG A TG+GKTAA+ LP L Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 Q+L + P+IL+L PTRELA+QV++ + +KH +++ + GG Y Sbjct: 66 QNL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + IVV T GRLL ++K D + L+LDEAD ML MGF +D+E I + Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ +AI+ R +++P EV S R I Q Y+ + K LV Sbjct: 182 QTALFSATMP-EAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRF 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + +I+FVR + E+A L G N+ L G+M Q R + ++RL +GR+++L Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + LL Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 + R ++ I + + EK K +++ + ++ +A Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRA 405 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 158/424 (37%), Positives = 231/424 (54%), Gaps = 8/424 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F+E+ L + LL+A++++GF P+ IQ IP L+GRD+LG A TGTGKTAA+ LP L Sbjct: 1 MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L + + R LI+TPTRELA+Q+ + K+T L + I GGV Sbjct: 61 QSL---SKGEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI++AT GRL I + A+E +LDEAD+MLDMGF DI+ + +Q Sbjct: 118 KAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + I+ A LL +P + +P T I Q Y D L +K +LL L+ Sbjct: 178 TLLFSATMPKE-IESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRL-NKISLLTSLI 235 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K+ + +R +VF + + +A+ L +A + + G Q R A+ EG++ VLV Sbjct: 236 KEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGIDI ++S+V N+D+P + Y+HRIGRT RAG G AI+L D L ++ Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355 Query: 364 GRYIEEPI---KARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 ++I I ++ + KT P Q + + K + K + K + K KK Sbjct: 356 EKHIGMVIPEVPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVKTEEKILLNEGAKKTK 415 Query: 421 RDTK 424 K Sbjct: 416 AHKK 419 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 172/432 (39%), Positives = 249/432 (57%), Gaps = 6/432 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F LD S+L+A+Q+ G+ +PT IQ +IP + + VL SA TGTGKTAA++LP L Sbjct: 1 MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L R + PR+LI++PTRELA Q++D ++ +++ ++ TITGG++Y +F Sbjct: 61 DKLTKN-RSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMF 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 S+ DI+VAT GRLL +++ + + +E +ILDEADRMLDMGF DI I T ++Q Sbjct: 120 SKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L+FSAT + IQ A+ L +PV +S P K I Q Y AD+ HK +L H + Sbjct: 180 MLMFSATFDPP-IQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K E T++I+F + +L++ L + I L G+M QG R + I R +LV Sbjct: 239 KNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+A+RGID+ ++SHVFN+DMPR + Y+HRIGRT RA KG AISLV D L K+ Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R+ I+ I + A K+ P +K + KK K + KKR R Sbjct: 359 ERFTNLKIEIASIPGME----ATILKEAKAPKRKSKGRSFVKKGKVFKNEANAKKRIRSK 414 Query: 424 KNIGKRRKPSGT 435 GK + + + Sbjct: 415 PVFGKTNQSAPS 426 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 161/446 (36%), Positives = 233/446 (52%), Gaps = 14/446 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 TF++LEL E +L A+ D G+T PT IQ AIP L RDV+G A TGTGKTA++ LP Sbjct: 153 NSVTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLP 212 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L+ +L R ++ PR LIL PTRELA+QV+++ K+ L+ A + GG + + E Sbjct: 213 MLE-ILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKE 271 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 V + D+++AT GRLL + L++DEADRMLDMGF DIE I G Sbjct: 272 VLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPN 331 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFSAT+ I+ A+ L P E++ + I D+ K L Sbjct: 332 RQTLLFSATM-APTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYS-KRETLRQ 389 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LLK P +IVF ++ V L L + G + L G++ Q R +++ + V Sbjct: 390 LLKDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKV 449 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LV +DVAARGIDI +SHVFNFD+P + Y+HRIGRT RAGR+G A S+ +D L Sbjct: 450 LVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAE 509 Query: 362 KVGRYIEEPIKARVIDELRP----KTRAPSEKQTGKP-------SKKVLAKRAEKKKAKE 410 + + + I +D ++ + P +T KP V R ++ +AK Sbjct: 510 AIEKLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPREQQPEAKP 569 Query: 411 KEKPRVKKRHRDTKNIGKRRKPSGTG 436 ++ R +++ + P G Sbjct: 570 QQTARPERQPTRNTRHQRDEIPPAPG 595 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 151/442 (34%), Positives = 225/442 (50%), Gaps = 26/442 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V +FSE + ++ + ++GF PT IQA + P L GRDV+G A TG+GKT AY+LP+ Sbjct: 78 VLSFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPS 137 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ + P + G P LIL PTRELA QV + + ++ A I GG Sbjct: 138 IIHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLR 197 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 S +I VAT GRLL +++ + L+LDEADRMLDMGF I+ I G + Sbjct: 198 ELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP 257 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLV 240 +QT+++SAT + I+ A L D V+++ S I Q + E K L Sbjct: 258 RQTVMWSATWPKE-IRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCRE-EEKEDKLC 315 Query: 241 HLLK---QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL + + ++IVFV +++ L+ L +G + G+ Q +R+ + G Sbjct: 316 KLLSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSG 375 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA--- 354 R+ VL+ATDVAARG+DI DV V N+D P + + Y+HRIGRTAR+G+ GTA + A Sbjct: 376 RIPVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNI 435 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 L + R +PI +I Q G ++ A+ A+K + K + + Sbjct: 436 RQSPNLIALLREANQPINPDLI-------------QLGDAAR---AEMAQKHRGKMRGRD 479 Query: 415 RVKKRHRDTKNIGKRRKPSGTG 436 R R R+ N K +G Sbjct: 480 RFYNRDRNASNRYPYAKSKLSG 501 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 219/428 (51%), Gaps = 4/428 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+ +L ++LEAL++ + PT IQ AIP + G+D+L A TGTGKTAA+ LP L+ Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62 Query: 66 LLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L R K P R+L+L PTRELA QV+ + + AK + GGV+ + Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQALK 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DIVVAT GRLL + ++TL+ DEADRM DMGF DI+ I ++Q Sbjct: 123 SGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQN 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT + + +L+DP+ + I Q D + K LL + Sbjct: 183 LLFSATYPSE-VMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDR-DKKMELLNEVFG 240 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +++VF R + + +++L G + L G+ Q R++ +++ G+ +LVA Sbjct: 241 VESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVA 300 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+DI ++ V N ++P + Y+HRIGRT RAG G AISLV + L + Sbjct: 301 TDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE 360 Query: 365 RYIEEPIKARVIDELRPKTRA-PSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + I++ + R P + G+ K + +K++ + ++ + D Sbjct: 361 KLIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDK 420 Query: 424 KNIGKRRK 431 K+ KR + Sbjct: 421 KDESKRGR 428 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 141/399 (35%), Positives = 221/399 (55%), Gaps = 9/399 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L LD +L AL++ G+ +P+ IQ IP L+G DV+G A TGTGKTAA+ LPAL Sbjct: 63 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122 Query: 66 LLDFPRKK--SGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 + + S ++L+L PTRELA+QV++ A H + I GG Y Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR++ ++++ + D ++ L+LDEAD ML MGFA+D+E I T K Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LFSAT+ ++I+ A++ L DP EV T I Q Y + HK + + Sbjct: 243 QVALFSATMP-NSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMH-SHKLDAMTRV 300 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ IVFVR ++ E+A+ L+ G + G++ Q R + L +GR+++L Sbjct: 301 LEVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDIL 360 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR+G AI V + +L + Sbjct: 361 VATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQ 420 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 + + + ++ P A +E + + ++++ Sbjct: 421 IEKATRQKVE----PMHMPTAEAVNETRKQRFAQQITET 455 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 557 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 139/394 (35%), Positives = 210/394 (53%), Gaps = 7/394 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FSEL L + A+ + GF + IQ+ AIP L G+D++G A TGTGKTAA+ + Sbjct: 1 MKKLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 PA++ L +S + LIL PTREL +QVS+ R+L K+ ++ + GG Sbjct: 61 PAIELL----EVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +N IV+AT GR++ +++ + ++ ++LDEAD MLDMGF +D+E I +T Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT++FSAT+ D I +R + P + KI Q YY + K L Sbjct: 177 IDRQTIMFSATMTED-ILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENA-KGEAL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L++ ++VF + +V + L+ G L G++ Q +R++ + G + Sbjct: 235 ARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNI 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVA RGID+ +V VFN+D+PR G+ Y+HRIGRT RAG+KG A S + Sbjct: 295 EILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYN 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 L K+ R I+A I L T K Sbjct: 355 LKKIERINGIKIEAGKIPTLDDLEETKIHSYTSK 388 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 209/417 (50%), Gaps = 9/417 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F + L +++AL + G+ PT IQA A+PPA+ GRD+ G A TGTGKTAA+ LP Sbjct: 1 MTQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPI 60 Query: 63 LQHLLDF---PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L L R R+L+L+PTRELA Q++D R+ K + GGV Sbjct: 61 LHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + D++VAT GRLL + + +VE L+LDEAD+MLD+GF ++ I Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q+L FSAT+ + I A + L DPV+V+ P +++ Q K ALL Sbjct: 181 KARQSLFFSATMPKN-IATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGA-KQALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L+ R +VF R + + L + GI + + G Q +R A+ G Sbjct: 239 GTILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ V+HV NFD+P + Y+HRIGRTARAG G AIS + Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAY 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 L + R + + I P P +Q + + + + + R Sbjct: 359 LRDIERLTRQKVPEMAI----PVGFVPPSRQEAAEAVAEAERDRRQPGPRGQRPGRS 411 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 156/445 (35%), Positives = 226/445 (50%), Gaps = 13/445 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F + ++D G+ PT IQ IP ALDGRDV+G A TGTGKTAA++LP L Sbjct: 1 MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L+ PR G R +I+TPTRELA Q+ L K+T L T+ GGV Y + Sbjct: 61 QRLMRGPR---GRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +I V GRLL +++ ++ LILDEAD+M DMGF D+ I ++Q Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ DAI+ A L +P + S + Y + KTALL+ LL Sbjct: 178 TMLFSATMP-DAIRALAREALREPQTIQIGRS-APVSTVTHAIYPVAEH-LKTALLIELL 234 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + ++F R + R L++ L G L+G M Q +R A+ GR +LV Sbjct: 235 RHTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILV 294 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ +SHV N+DMP++ + Y HRIGRT RA R G A +LV D ++ + Sbjct: 295 ATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAI 354 Query: 364 GRYIEEPIKARVIDELRPKTRAPS--EKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK--- 418 R I EP+K + AP+ + P + + E E++ ++ Sbjct: 355 ERLIGEPLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDNRAPRRHDA 414 Query: 419 RHRDTKNIGKRR--KPSGTGVPPQT 441 + R + +RR + + P Sbjct: 415 QERRSDTAPRRRDVQEWRSDAAPNR 439 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 154/450 (34%), Positives = 221/450 (49%), Gaps = 17/450 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L+ LL AL D PT IQ IPP ++GRDVLG A TG+GKT +LLP+L Sbjct: 1 MSFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + +IL+L+PTRELA Q+ ARE K+ + GG + Sbjct: 61 HR-NKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+V+AT GRL+ +++ + V T++LDEADRMLDMGF D+E I +Q Sbjct: 120 RRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLF+ATL IQ + +DPV + ++ I Q K LL +L Sbjct: 180 TLLFTATLPA-RIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTIL 238 Query: 244 KQPEA--TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +P+ ++++F R + +LAN L G + L G+ Q +RN + + G+ + Sbjct: 239 TEPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRI 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI V+ V N+D+P+S + Y+HRIGRT RAGR G AIS D LL Sbjct: 299 LVATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLR 358 Query: 362 KVGRYIE------EPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + R + RP + G +R + A + +P Sbjct: 359 DIERLLGSSVPVSPLSPPPQPKGDRPFRSSGPRSSGGPRPGGFRGERTFRSDAPGEGRPG 418 Query: 416 VKKRHRDTKNIG-------KRRKPSGTGVP 438 ++ R + G +R KP+G G Sbjct: 419 FRQGGRTDRPAGGSGRSEWRRDKPAGHGPR 448 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 162/440 (36%), Positives = 237/440 (53%), Gaps = 22/440 (5%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+TTF +L L + +L+AL KG+ PT IQA AIPP L+GRD+LG A TGTGKTAA++L Sbjct: 1 MTITTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFML 60 Query: 61 PALQHLLDFPRKKS-GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P++ L + + R+L+L PTRELA Q++ A++ L + +I GG + Sbjct: 61 PSIDRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKD 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DI+VAT GRLL I ++ F AVE L+LDEAD+MLD+GF + I Sbjct: 121 RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTL FSAT+ IQ+ + +PV+VS P+ ++I Q+ + + K AL+ Sbjct: 181 AERQTLFFSATMPKQ-IQELVGKYCRNPVKVSVTPAATTAERIDQYLFMV-QQDEKQALI 238 Query: 240 VHLLKQP-----EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 +LK + R +VF R + + LR+AGI + + G Q +R A+ Sbjct: 239 EMILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEF 298 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 + +L+ATDVAARGIDIP VSHV N+++P + Y+HRIGRTARAG+ G AI+ Sbjct: 299 KRAKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAE 358 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 + L + + + R P + + V + E+K+ + KP Sbjct: 359 DERAYLKDIQKNTDAEF-----------DRLPLPENFRAVVEGVGPTKREQKQRGPRIKP 407 Query: 415 RVKKRHRDTKNIGKRRKPSG 434 + K R + N R KP G Sbjct: 408 KPKARKQGGTN---RSKPQG 424 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 215/408 (52%), Gaps = 7/408 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F +L + + +A+ D GF + IQ+ AIP L +DV G A TGTGKTAA+ + Sbjct: 1 MEKLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 P L+++ + + +IL PTRELA+QV++ R+L+ + +D+ + GG Sbjct: 61 PLLENI----DSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + I++ T GR++ +I ++T+ILDEAD MLDMGF +DIE+I + Sbjct: 117 IKALQKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 + +Q LLFSATL + I A+R +P V + Q Y+ + + K LL Sbjct: 177 YERQFLLFSATLPQE-ILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKE-DMKLELL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL + S+VF + +V +L + L+ G L G++ Q +R+ + + +G + Sbjct: 235 SRLLDLHDFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNI 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVAARGID+ V VFNFD+P + Y+HRIGRT RAG+ G A S V + Sbjct: 295 EILVATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQ 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK 407 L + RY + I+ I L + + +K+ + K+ Sbjct: 355 LRDIQRYAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKET 402 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 163/436 (37%), Positives = 237/436 (54%), Gaps = 4/436 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F +L + + AL+ KG++ PT IQ AIP LDG+D+LG A TGTGKTAA+ +P Sbjct: 1 MTDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPL 60 Query: 63 LQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 LQ LL+ R R LILTPTRELA Q++ + + A T + + + GGV + Sbjct: 61 LQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFH 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRLL ++ +E +LDEAD+MLD+GF ++E IA + Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTL FSAT+ + I+D +ER L +PVEVS P + + Q + + K LL Sbjct: 181 RQTLFFSATMPRE-IRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEK-DAKFPLLKE 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL++ E R++VF ++ LA L G+ + G+M Q +R + + + G++ Sbjct: 239 LLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKT 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGID+ D+SHV NFDMP + + Y+HRIGRTARAG+ GTAI+ D +L Sbjct: 299 LVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLR 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAP-SEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I + I P R P S + + + K +K + + K Sbjct: 359 AIQKLIGKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAKGSGPRKGPGNGKFAQKPKGK 418 Query: 421 RDTKNIGKRRKPSGTG 436 K RR PS + Sbjct: 419 PTGKKSPPRRSPSKSS 434 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 222/425 (52%), Gaps = 2/425 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +LEL + ++++ G+ PT IQA IP L G+D++ SA TGTGKTAA++LP ++ Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + K L+LTPTRELA QV A+ K+ L + GGV+ + Sbjct: 85 LLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQ 144 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI+VAT GRLL I ++ ++ L+LDEADRMLDMGF +DI+ + +Q Sbjct: 145 GGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQN 204 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 ++FSAT I+ A LL DPVE+ A+ + I + D + K LL HL+K Sbjct: 205 MMFSATFSTP-IKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCD-MARKVDLLCHLIK 262 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + +VF R + ++ L + + G QG R A++ G + +LVA Sbjct: 263 TNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVA 322 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGIDI + +V N D+P + Y+HRIGRT RAG G AISLV A + LLL + Sbjct: 323 TDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIE 382 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 ++I P+ + K + G ++ ++ A + + ++R D + Sbjct: 383 KFIGNPLPKVDVVGFEQKILKAEPLKQGGQRQRRPSQSARPGQKAKTNHASSQQRRSDWR 442 Query: 425 NIGKR 429 R Sbjct: 443 KSSNR 447 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 158/437 (36%), Positives = 220/437 (50%), Gaps = 15/437 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF L L +L AL D G PT IQ +IP +DGRD+LG A TGTGKT +LLP L Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + R R L+L+PTRELA Q+ A++ AK+ H + + GGV ++ Sbjct: 61 HKIAEGRRHGIRN-RALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 N DIVVAT GRLL +++ N +I+DEADRMLDMGF DI I + +Q Sbjct: 120 KRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 +LLFSAT IQ+ A D V V P + IHQ + K LL +L Sbjct: 180 SLLFSATCP-PRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238 Query: 244 KQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + E + I+F R + +L+ L +AG + L G+ Q RN + R G + V Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI ++HV N+D+P++ + Y+HRIGRT RAGR G A+S D ++ Sbjct: 299 LVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVR 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + +PI +P + S + R + PR + R R Sbjct: 359 SIETMAGKPIPH-----------SPHSIPLSEQSLRKTFTRRPSFGRPQDRTPRGENRFR 407 Query: 422 DTKNIGKRRKPSGTGVP 438 + R + S +G Sbjct: 408 TDRGQQGRPRSSTSGNR 424 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 136/380 (35%), Positives = 205/380 (53%), Gaps = 6/380 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL L + A+ D G+T T IQ+A IP ++G DV+G + TGTGKTAA+ +P ++ Sbjct: 3 FNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIEM 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 L RK+ P+ LIL+PTRELAMQV D R+ K+ + + GG Sbjct: 63 LEVTDRKR---PQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELK 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DIVV T GR+L +I+ L+LDEAD ML+MGF +DIE + ++QT Sbjct: 120 KGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQT 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I + + +PV + + KI Q YY K +L+ L+ Sbjct: 180 VLFSATMPKP-ILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKK-EILMQLIS 237 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +++F ++ V EL + L G L G+M Q R + +G++N+LVA Sbjct: 238 MQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVA 297 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+ + VFN+D+P+ + Y+HRIGRT RAG++G A++L+ A L + Sbjct: 298 TDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLE 357 Query: 365 RYIEEPIKARVIDELRPKTR 384 R + + + L + Sbjct: 358 RTTRSKLTQKPLPSLEEVRK 377 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 147/424 (34%), Positives = 231/424 (54%), Gaps = 5/424 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+V F++L +++ L+E L + PT +Q +IP L+G+++L +A TGTGKTAA+ L Sbjct: 1 MSV-NFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P +Q + +K +G P+ L+L PTRELA QV D+ + + T L I + GG + Sbjct: 60 PIIQTV--QQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQK 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E DI++AT GRLL ++ N + L+LDEADRMLDMGF D++ I Sbjct: 118 RKLEEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPA 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ LLFSAT I+ A +L+E PVEV +P+ + + Q Y D + K LL Sbjct: 178 EKQILLFSATF-EKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDK-KRKRELLA 235 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + +VF + ++ ELA L+ GI + G+ QG R A+ +G+V Sbjct: 236 YLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVR 295 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATDVAARG+DI ++ V NFDMP + Y+HRIGRT RAG+ G A+SL+ + LL Sbjct: 296 ALIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLL 355 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + +++ + + P E + ++ ++K + + + + Sbjct: 356 HAIENLLDQRLPQEWLAGFEPTLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRGKS 415 Query: 421 RDTK 424 R+++ Sbjct: 416 RNSR 419 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 214/416 (51%), Gaps = 6/416 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L L L+ AL +G+ PT IQAAAIP AL G D+L +A TGTGKTAA++LP+L+ Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 66 LLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L + + P R+L+LTPTRELA Q+ + + K+ L + GG+ Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +IVVAT GRLL ++K++N VE ++LDEADRMLDMGF DI I + Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFSAT I+ A+ + P V + Q D + K LL Sbjct: 185 RQTLLFSATFSAP-IRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTI-QKRNLLER 242 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ + IVF + ++ V + L ++ + G+ Q R E + +G + V Sbjct: 243 LIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRV 302 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARG+DI ++ V N++MP + Y+HRIGRT RAG G AISL++ + + Sbjct: 303 LVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 + + I+ P+ + KP + +R + AK + + + Sbjct: 363 SIKELTGNKLLIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTR 418 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 137/433 (31%), Positives = 211/433 (48%), Gaps = 8/433 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF E + +L ++ +GF +PT IQ P AL GRD++G A TG+GKT +Y LP Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P G P +L+L PTRELA+Q+ + + + + GGV Sbjct: 172 IVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIR 231 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 S +IV+AT GRL+ ++ + + V L+LDEADRMLDMGF I I + R Sbjct: 232 DLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLV 240 +QTL++SAT + ++ A L DP++V I Q D E + L Sbjct: 292 RQTLMWSATWPKE-VKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350 Query: 241 HL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 +L Q ++++F + ++ +LRE G + G+ Q +R+ ++ GR Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++VATDVAARGID+ +++V N+DMP + + Y+HRIGRT RAG GTAIS + Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKG 470 Query: 359 L---LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 L L + R + I ++ R + G + R Sbjct: 471 LGAKLISIMREANQNIPPELLKYDRRSYGGGHPRYGGGRGGRGGYGRRGGYGGGRGGYGG 530 Query: 416 VKKRHRDTKNIGK 428 ++R N G+ Sbjct: 531 NRQRDGGWGNRGR 543 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 157/454 (34%), Positives = 221/454 (48%), Gaps = 21/454 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L ++ E ++ G+ PT IQA AIP +GRD++G A TGTGKTAA+LLP + Sbjct: 1 MSFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+ +K G R LIL PTRELA Q+ +L + T L A I GGV Sbjct: 61 HRLMTTKSEKRG-VRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRAL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + DI+VA GRLL ++ + N A+ETL+LDEAD M DMGF DI+ I +Q Sbjct: 120 RQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ AI A L DPV V + Y K LL+HLL Sbjct: 180 TLLFSATMP-PAISGLAHETLTDPVTVRIGH-MAPLSTVEHAIYPISHT-QKAPLLLHLL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ IVF R + R LA L +G L+G + Q +R A+ G VLV Sbjct: 237 EEAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ V HV NFD+P + + Y HRIGRT RA +G A + V D ++ + Sbjct: 297 ATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK-------------RAEKKKAKE 410 ++++P+ R ++ P P + R + +A+ Sbjct: 357 ESHMKKPLPRREVEGFEPDPSEFRRSYAPAPRYPARGRQGGYGGRPQQGGYRGQGDRARS 416 Query: 411 KEKP----RVKKRHRDTKNIGKRRKPSGTGVPPQ 440 ++P +R + + R +P P+ Sbjct: 417 SDRPQGERSFSERPQGDRPRDDRARPDTRTERPR 450 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 142/403 (35%), Positives = 223/403 (55%), Gaps = 17/403 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF ELEL+E ++ A+ +KG+ PT IQ+ AIP L D+L + TGTGKTAA+ LP Sbjct: 16 LMTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPM 75 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAE 121 L +K++ LIL PTREL MQV++ R +K+ ++IA + GG Sbjct: 76 LSLTQPGDKKRTNS---LILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIR 132 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DIVVAT GRL+ +I+ + ++LDEAD ML+MGF +DIE I Sbjct: 133 DLKRGADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEE 192 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q FSAT+ + ++ +E+ L +P ++ + + +I Q YY + K L + Sbjct: 193 RQFAFFSATMPKEIVK-LSEKFLVEPERITLSRNNLTVSRIKQIYYTV-ESRDKVDLTIQ 250 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL+ + + +++F ++ V EL L +AG L G+M Q R+ + R +G V+V Sbjct: 251 LLQLHKTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSV 310 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARGID+ + V N+D+P+ + Y+HRIGRT RAG++G AI+LV + Sbjct: 311 LIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIK 370 Query: 362 KVGRY-----------IEEPIKARVIDELRPKTRAPSEKQTGK 393 ++ R +E + ++D+L + R ++ + GK Sbjct: 371 QIERLSNSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGK 413 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 132/381 (34%), Positives = 203/381 (53%), Gaps = 8/381 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M++ FSE+ L +L +++ GF PT IQ+ AIP L+GRD++G A TGTGKTAA+ + Sbjct: 1 MSM-NFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNH 119 P L+ L +K + LIL PTRELA+QV+ LA + +++ I GG + Sbjct: 60 PLLEMLDYSSKK----VQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQ 115 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +VV T GR++ +++ + + ++LDEAD ML+MGF +DI +I Sbjct: 116 INTLKKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVG 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q +FSAT+ AI A+ ++P + + Q+Y + K L Sbjct: 176 KERQITMFSATMPK-AIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGE-SRKFDAL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L++ S+VF +++V EL L+ G L G+M Q RN + + Sbjct: 234 SKLIEYYNPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSI 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARGID+ D+ VFN+D+P+ + Y+HRIGRT RAG+ G A S Sbjct: 294 KVLVATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHR 353 Query: 360 LGKVGRYIEEPIKARVIDELR 380 L ++ RY + IK+ + + Sbjct: 354 LREIQRYTKIKIKSLNVPSEK 374 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 552 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 202/386 (52%), Gaps = 10/386 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VTTF E +L+ ++ GF PT IQ A P A+ GRD++G + TG+GKT +Y LPA Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P G P +L+L PTRELA+Q+ + K + + + GGV Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I +AT GRLL + + R V L+LDEADRMLDMGF I I + R Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 300 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTAL-- 238 +QT++FSAT + +Q A L D ++V+ I Q D+ + + L Sbjct: 301 RQTVMFSATWPKE-VQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359 Query: 239 -LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 + +LK + + ++F + ++ +LR+ G + G+ Q +R+ + G Sbjct: 360 DIEEVLKDRD-NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTG 418 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + ++VATDVA+RGID+ ++HVFN+D P + + Y+HRIGRT RAG KGTA + + + Sbjct: 419 KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478 Query: 358 LLLGKVGRYI---EEPIKARVIDELR 380 ++ + ++ I ++ + R Sbjct: 479 KQARELVSILSEAKQDIDPKLEEMAR 504 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 552 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 157/437 (35%), Positives = 237/437 (54%), Gaps = 10/437 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT TTF L E L AL T PT IQ AIP AL GRD+LG A TGTGKTAA+ L Sbjct: 1 MTSTTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFAL 60 Query: 61 PALQHLLD-FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P L HL+ + + + LIL+PTRELA+Q+++ +L++ T + + GGV+ Sbjct: 61 PLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DI+VAT GRLL +++ D R LILDEADRMLDMGF +D+ I G+ Sbjct: 121 IQALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q+++FSAT+ I+D ++++L +P +VS P+ +KI Q + K L Sbjct: 181 DDRQSMMFSATMPKP-IEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKK-HWL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + + + + R +VF R + + L + L +AGI + G Q R +A+ +G + Sbjct: 239 IDFVSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATD+ ARGI + D+SHV NFD+P ++Y+HRIGRTARAGR G AI+LV+ + Sbjct: 299 DVLVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAK 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L ++ + + + D + GK +R + + +PR + + Sbjct: 359 LKQIIKLTGIDLTPQATDYTVNVLAGELDADDGK-------RRGPRNQQPRNGRPRNRGK 411 Query: 420 HRDTKNIGKRRKPSGTG 436 + + K G Sbjct: 412 NGNGGRPNGGAKRQNAG 428 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 552 bits (1424), Expect = e-156, Method: Composition-based stats. Identities = 161/433 (37%), Positives = 232/433 (53%), Gaps = 8/433 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FSEL L E +L A+ G+T PT IQA AIP L RDVLG A TGTGKTAA+ LP L Sbjct: 64 MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 LL+ R ++ PR LIL PTRELA QV ++ K+ L++A + GGV++ + Sbjct: 124 -TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKL 182 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+++AT GRLL +++ +E L++DEADRMLDMGF DIE I + +Q Sbjct: 183 LRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 242 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE-HKTALLVHL 242 TL FSAT+ + IQ + L +PV V + I Q + + K L L Sbjct: 243 TLFFSATMPPE-IQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLREL 301 Query: 243 LKQPEA-TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + IVF ++ V + L++ G N L G+M Q R +A+ + G + Sbjct: 302 IRNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATL 361 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVA+DVAARG+DIP VSHVFN+D+P + Y+HRIGRT RAGR GTAI LV D L Sbjct: 362 LVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLA 421 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I I + P AP ++ + + + ++ K + R +++ Sbjct: 422 AIEKLIGNAIPWQG----EPLGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERKAE 477 Query: 422 DTKNIGKRRKPSG 434 + R + + Sbjct: 478 VEDGVEVRAERAP 490 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 157/423 (37%), Positives = 225/423 (53%), Gaps = 14/423 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M TTF EL L +L L++ + PT IQAA IP L +D++G A TGTGKTAA+ L Sbjct: 1 MVSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFAL 60 Query: 61 PALQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P +Q L + K G R LIL+PTRELA Q+ ++ R A+ HL A I GGV Y + Sbjct: 61 PLIQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DI+VAT GRL+ +++ VETLILDEAD MLDMGFA ++ I + Sbjct: 121 FKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++ T +FSAT+ D I+ A+ LL+ P V +P + ++ Q+ K L Sbjct: 181 RKRHTQMFSATMP-DNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLT 239 Query: 240 VHLLKQPE-ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 + LLKQ E R+++F R R LA++L + G+ QG+R ++ G+ Sbjct: 240 LELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGK 299 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 VLVATD+AARGID+ DV V N+D+P + Y+HRIGRTARAG G AI+L + Sbjct: 300 TPVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIR 359 Query: 359 LLGKVGRYIEE-----------PIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK 407 V + + P + R + E R K +P +++ P ++ Sbjct: 360 KARNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGYGRNGS 419 Query: 408 AKE 410 E Sbjct: 420 RAE 422 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 207/379 (54%), Gaps = 10/379 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF+EL + E++L A+ + G+ + T IQA AIP ++G+DVLG + TGTGKTAA+ +PA Sbjct: 1 MTTFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPA 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAE 121 ++ + + + LI+ PTREL QV+ R+ +K+ + I I GG + Sbjct: 61 IEMV----QPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQ 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + IVV T GR++ +++ + +ILDEAD ML+MGF +DIE I Sbjct: 117 LLKRGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSE 176 Query: 182 K--QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 + QT+LFSAT + I A+ DPV V + R + Q YY K L Sbjct: 177 RSYQTILFSATWPSE-IMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRG-KKANAL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL + ++F ++ V EL L + I C L G+M Q R+ +++ G + Sbjct: 235 RVLLNHYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSM 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHL 358 +L+ATDVAARGID+ DV V NFD+P+ + Y+HRIGRT RAG+KG AI+L+ Sbjct: 295 PILIATDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRS 354 Query: 359 LLGKVGRYIEEPIKARVID 377 L + RY + IK + Sbjct: 355 ELKNIMRYTKTNIKHHALP 373 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 133/389 (34%), Positives = 214/389 (55%), Gaps = 7/389 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPALQ 64 F L L +S+L+AL+ KGF PT IQ IP L G D++G A TGTGKT A+ P ++ Sbjct: 7 FKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIE 66 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + +KSG + ++LTPTRELA+QVS+ L L I I GG + + Sbjct: 67 KI----PEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLK 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DIVV T GR++ +++ ++ + + +LDEAD ML+MGF DI+ I T K+ Sbjct: 123 SGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRM 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L FSAT+ I ++ +++ V+ + Q Y+ + + K L ++ Sbjct: 183 LFFSATMPKP-ILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESD-KFEALCRIID 240 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF R + +LA L + G L G++ Q +R + + R + ++N+LVA Sbjct: 241 IEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA 300 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGIDI D++HV N+ +P+ ++Y+HRIGRT RAG++GTAI+ V + ++ L + Sbjct: 301 TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK 360 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + + +K I E++ +A + + Sbjct: 361 KTSKSAMKRGRIPEIKDVIKAKRARVKAE 389 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 153/398 (38%), Positives = 219/398 (55%), Gaps = 6/398 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F+ L L E LL A+ ++ + PT IQA +IP L+G D++G A TGTGKTAA++LP Sbjct: 56 LTDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPI 115 Query: 63 LQHLL-DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L + + R R L+L PTRELA Q++D AR K T +A + GG A Sbjct: 116 LHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQAR 175 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRLL ++ AVET++LDEAD+MLD+GF I I + + Sbjct: 176 RMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQ 235 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q ++FSAT+ I+ A L DP EV+ + ++ +I Q E K L Sbjct: 236 RQAVMFSATMPKP-IRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDK-LAW 293 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL R+IVF R + ++ L +AGI + G QG+R A+ + GR+ V Sbjct: 294 LLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRV 353 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+ +VSHV NF++P ++Y+HRIGRTARAG +G AISLVE + L Sbjct: 354 LVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLR 413 Query: 362 KVGRYIEEPI---KARVIDELRPKTRAPSEKQTGKPSK 396 + I + A+ + L P + Q + + Sbjct: 414 DIETLIGRHLVPGGAQPVRGLAPPHLLRARNQVARQGQ 451 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 148/386 (38%), Positives = 207/386 (53%), Gaps = 10/386 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++ L L+ L GF++PT IQ AIP L G D++G A TGTGKTAA+ LP L + Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + + + L+L PTRELA QV D + ++ + GG +Y Sbjct: 117 IDFSKK----CVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRR 172 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +VV T GRLL I++ + ++TL+LDEAD ML MGF DIE I +T +QT+ Sbjct: 173 GARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTM 232 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL + A R L P +S +P I Q YY ++ + K A + + + Sbjct: 233 LFSATLSS-RVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSD-KIAAITRVFEV 290 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +++F R R V ELAN L G L G++ Q R + R +G++ VLVAT Sbjct: 291 ETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVAT 350 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DI D+SHVFN+D+P + Y+HRIGRT RAGR GTAISLV D + ++ + Sbjct: 351 DVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQ 410 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQT 391 Y + + I P E + Sbjct: 411 YTGKKL----IKGELPTVEQIEEHRN 432 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 145/440 (32%), Positives = 223/440 (50%), Gaps = 7/440 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + L + ++ G+ PT IQ AIP + G+DVLG A TGTGKTAA+ LP L Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+ +++ G R L+L PTRELA Q++D + K T L T+ GGV + E Sbjct: 63 LV---QEERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLKE 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +IVVA GRLL +I + D VE L+LDEAD+M DMGF D+ I ++Q L Sbjct: 120 GAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNL 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 +FSAT+ D I+ A +L +PV V + T + Y KT LL +LK Sbjct: 180 MFSATMPDD-IRRLAHEILRNPVTVQVSR-TAPAATVSHALYPVGQH-LKTPLLFEMLKH 236 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + ++F + + R + L +AG L+G + Q +R A+ +G ++VAT Sbjct: 237 TDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVAT 296 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARGID+ +SHV N+D+P + + Y HRIGRT RA + G A ++V + D + + + Sbjct: 297 DIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEK 356 Query: 366 YIEEPIKARVIDELRPKTRAP-SEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 + I+ R I+ AP + + +P ++ +R K + + Sbjct: 357 VLGTKIERRRIEGFDYAVPAPQKDTEFARPPREPQRRRDGAKPGAGRPAAAGPAGAKPAS 416 Query: 425 NIGKRRKPSGTGVPPQTTEE 444 +G + + +G P + Sbjct: 417 AVGAKGNAAASGRPAAHGSK 436 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 153/442 (34%), Positives = 232/442 (52%), Gaps = 9/442 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS + +A+ ++ PT IQ IP L G+DVL SA TGTGKTAA+ LP L Sbjct: 1 MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60 Query: 64 QHLLDFPRKKSG---PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + P+ K P +LIL+PTRELA Q+ + + +I ++ GGV+Y Sbjct: 61 NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQN 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++ N + +VAT GRL+ +K+ + + ++ L++DEADRMLDMGF DI+ I T Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q L+F+ATL I+ A++ L+DP ++ + K I Q Y D K +LV Sbjct: 181 DQQVLMFTATLNKQ-IEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLV 239 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L + + ++I+F + L++ L + L G+M Q +R I R + Sbjct: 240 DVLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQ 299 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGID+ D++HV NFD+PR + Y+HRIGRT RA RKG AISLV + +L Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFML 359 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 K+ +Y IK VI + + + K + + +K +K K++ Sbjct: 360 QKIEKYAN--IKIEVIKSTHSTSDLSLVYKKKESGFKKKRRSSGSRKKNDKFTSSSKRKK 417 Query: 421 RDTK---NIGKRRKPSGTGVPP 439 K RR+P + P Sbjct: 418 HGFKADVKAKSRRRPVKKNIKP 439 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 150/406 (36%), Positives = 218/406 (53%), Gaps = 11/406 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + + FSE+ L + +L+AL D G+ PT IQA IP L GRD+LG A TGTGKTAA+ LP Sbjct: 17 SESGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALP 76 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHA 120 L + K P++L+L PTRELA+QV++ + A + ++ + GG AY Sbjct: 77 LLSRI----DIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQL 132 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++V T GRL+ +K D + TL++DEAD ML MGF D+E I +T Sbjct: 133 NQLKRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPP 192 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q LFSAT+ I+ A + L DP +V T I Q ++ HK L Sbjct: 193 GRQVALFSATMPAP-IKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGT-HKLDALT 250 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ IVFVR + ELA L G L G++ Q R I R +G+++ Sbjct: 251 RILEAETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKID 310 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ VSHV N+D+P ++Y+HRIGRT RAGR G AI V + +L Sbjct: 311 ILVATDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWML 370 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 + + + I+ + P T A ++K+ ++ + A K+ Sbjct: 371 KVIEKTTRQQIEMMKL----PSTEAINDKRIADFNQSITDTLASKE 412 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 155/431 (35%), Positives = 231/431 (53%), Gaps = 7/431 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F + D ++ + G+ PT IQ AIP L GRDV+G A TGTGKTAA+ LP + Sbjct: 1 MSFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q LL+ GP R+L+L PTRELA+Q+ ++ EL + A + GGV M + Sbjct: 61 QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQA- 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + ++VA GRLL + + V+TL+LDEADRMLDMGF DI I + R+Q Sbjct: 120 ARRSSVIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT+ D I+D A+++L P V +T K + +Y K LL +L Sbjct: 180 NLLFSATMPDD-IRDLADKILYRPATVQV-ANTAPAKTVEHVFYPVSQH-LKNNLLFKVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +Q + +VF R + + LA L G +L+G M Q +R A+ +G V+V Sbjct: 237 EQTDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID ++HV N D+P + +TY HRIGRT RAGR G+A S V D L+ ++ Sbjct: 297 ATDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + + I+ R +++ P+ + K A +K + +P ++ + Sbjct: 357 EKAVGYSIEHRTLEDFD--YDKPNTH-PAPAKRGGGRKPAADRKPAGERRPGRGRKPAEA 413 Query: 424 KNIGKRRKPSG 434 ++ + RKP+G Sbjct: 414 RDGDESRKPAG 424 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 161/479 (33%), Positives = 235/479 (49%), Gaps = 49/479 (10%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F +L L LL+A+++KG+ PTAIQA AIP L GRD+L A TGTGKT A+ LP + Sbjct: 1 MSFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q +L R PR LILTPTRELA+QV + + A+ L GGV Sbjct: 61 Q-ILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI+VAT GRLL +E+ ++E L+ DEADRMLD+GF+ +I I ++ Sbjct: 120 ERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRR 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT I+ A ++L+ P + P T + + Q + + ++K LL+HL+ Sbjct: 180 TMLFSATYT-PQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNK-DNKLPLLLHLI 237 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ + R +VF R R + L + L GI+ L G Q R ++ +G++++LV Sbjct: 238 EKQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILV 297 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI ++ V N+D+P S + Y+HRIGRT RAG G A+SLV + LL + Sbjct: 298 ATDVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAI 357 Query: 364 GRYIEEPIKARVIDEL-------------------------------------------- 379 + I + Sbjct: 358 EDLLRHQIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLTVQGR 417 Query: 380 --RPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTG 436 +PK P G ++K A++AE K + KPR + + GK P G Sbjct: 418 GKKPKDAGPESTTRGNKNEKSDARKAEDKDTRPDSKPRGRSTGKPDARSGKDSGPDAKG 476 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 151/404 (37%), Positives = 230/404 (56%), Gaps = 14/404 (3%) Query: 1 MT--VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAY 58 MT + +F++L+L LL+AL + G+ P+ IQA IP L G D+LG A TGTGKTAA+ Sbjct: 39 MTSPIESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAF 98 Query: 59 LLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYM 117 LP L L P++L+L PTRELA+QV++ + AK+ + + GG + + Sbjct: 99 ALPLLDRL----DLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMV 154 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 + ++V T GR++ +I+ ++ + ++ TL+LDEAD ML MGF D+E I Sbjct: 155 VQLRQLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQH 214 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 T +QT LFSAT+ DAI+ A R L +P EV ST Q Y + + HK Sbjct: 215 TPAERQTALFSATMP-DAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQIS-VAHKLD 272 Query: 238 LLVHLLK-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L +L+ + + +I+FVR + ELA+ L G + L G+M Q R I++L Sbjct: 273 ALTRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKG 332 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G+++++VATDVAARG+D+ +SHV N+D+P + Y+HRIGRT RAGR G+AI V + Sbjct: 333 GQLDIVVATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPRE 392 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 +L + R +PI+A + P A ++K+ ++V Sbjct: 393 MRMLKVIERATRQPIEALQL----PSREAVADKRVAAFRQQVAT 432 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 164/458 (35%), Positives = 239/458 (52%), Gaps = 22/458 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L L LL+A++D G+T PTAIQA AIP L +D++G A TGTGKTA+++LP + Sbjct: 36 MTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMI 95 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 ++ R+++ PR LIL PTRELA QV+++ + + L +A + GGV + + Sbjct: 96 D-VMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTL 154 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E D+++AT GRL+ + E L++DEADRMLDMGF DIE I + +Q Sbjct: 155 DEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQ 214 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ I+ A++ L +P + + K I + K L LL Sbjct: 215 TMLFSATMPAP-IEKLAKKFLSNPKRIETTRAATTNKDITAFKVPV-KARQKRDTLEWLL 272 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +I+F ++ V EL L+ G + + G+M Q R + + R G VN+LV Sbjct: 273 ANDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILV 332 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 A+DVAARG+DI VSHVFNFD P D Y+HRIGRT RAG KG A +LV D + V Sbjct: 333 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANV 392 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK------------------ 405 + IK +++R + S K TG + K AEK Sbjct: 393 EKLTGAKIKVFGKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDAPRK 452 Query: 406 -KKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTT 442 ++ ++KP K R R + P+G P+ Sbjct: 453 PRRESAEDKPARKSRPRRRDDESDDPVPAGEWNGPKPG 490 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 206/377 (54%), Gaps = 7/377 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ FS +L +AL+D F P+ IQA IP L GRD + A TGTGKTAA+ LP Sbjct: 4 EISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALP 63 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 LQ+L + + LIL PTRELA+QV++ L+K+ ++ IA + GG Y Sbjct: 64 ILQNL----SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQL 119 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +VV T GR+L +I + ++T ILDEAD ML MGF +D+E I + Sbjct: 120 KQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPE 179 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +KQ LFSAT+ I+ A L DP + T K I Q + A + K L+ Sbjct: 180 KKQMALFSATMPY-RIRQIANTYLNDPASIEIRMETATVKSIEQRFLFAS-VHQKPDALI 237 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + IVFVR + E+A L++ G+ + G++ Q R I + +G ++ Sbjct: 238 RVLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAID 297 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ V+HV N+DMP +TY+HRIGRT RAGR G I V + L+ Sbjct: 298 ILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLI 357 Query: 361 GKVGRYIEEPIKARVID 377 + R+ + I+ + Sbjct: 358 SSIERHTRQRIEKVQVP 374 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 150/435 (34%), Positives = 228/435 (52%), Gaps = 13/435 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L E + A+ + G+ PT IQA AIP L GRDVLG A TGTGKTA++ LP + Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMD- 283 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L R ++ PR LIL PTRELA+QV+++ + ++ L+ A + GG + + +V S+ Sbjct: 284 ILSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSK 343 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D+++AT GRL+ L++DEADRMLDMGF D+E I +QTL Sbjct: 344 GVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTL 403 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ + I+ A+ L++P E++ I +++ K L HLL+Q Sbjct: 404 FFSATMAPE-IRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMD-KRKALRHLLRQ 461 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + +++F ++ V L L + G L G++ Q R +++ G + +LV + Sbjct: 462 EKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCS 521 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARGIDI +SHVFNFD+P + Y+HRIGRT RAGR+G A +L D + + + Sbjct: 522 DVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEK 581 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKN 425 I PI I+ L + + S++ R + K + K + R N Sbjct: 582 LINAPIPRIEIEGL----------ERAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDN 631 Query: 426 IGKRRKPSGTGVPPQ 440 K R + Q Sbjct: 632 ARKDRAFTEADAKSQ 646 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 174/428 (40%), Positives = 241/428 (56%), Gaps = 3/428 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS+L L LL+A+++ GFT PT IQ A+P AL GRDV+ SA TGTGKTAA++LP+L Sbjct: 8 VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 64 QHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 Q + R ++ PR+L+LTPTRELA QV + R L+K + TI GG+ Y E+ Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEM 127 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D++VAT GRL+ +++ D VE L+LDEADRMLDMGF + +E IA + Sbjct: 128 LRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAER 187 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLF+ATL+ A + A+ L DPV + ++ Q + RAD LEHK LL L Sbjct: 188 QTLLFTATLDRTA-ERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETL 246 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L E + IVF+ + LA+ L E G L G+M Q RN ++ L +GR+NV+ Sbjct: 247 LGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVI 306 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGIDI D++HV NFD+P+ + Y+HRIGRT RAG G + SL + + Sbjct: 307 VATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRA 366 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + Y + V+ L P P + G + + K +R Sbjct: 367 IEAYTNKAADMHVLPGLEPMPE-PERRPGGFNKGRPGGGKPGFKGRGFGGGNGGGGGYRG 425 Query: 423 TKNIGKRR 430 + G+RR Sbjct: 426 NRPWGERR 433 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 123/415 (29%), Positives = 204/415 (49%), Gaps = 13/415 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF E L + +L+ + GF +PT IQ P AL GRD++G A TG+GKT A+++PA Sbjct: 211 IQTFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPA 270 Query: 63 LQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P +K P +LIL PTRELA+Q+ + + + + GG A Sbjct: 271 VIHINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSRITNTCVYGGTQRGPQAR 330 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I +AT GRL+ +++ + + V L++DEADRMLDMGF + I + R Sbjct: 331 ALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRPD 390 Query: 182 KQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTL++SAT + +Q A + +PV V+ S I Q Y + K L+ Sbjct: 391 RQTLMWSATWPKE-VQHLARDICNEEPVLVTVGRSGHACHNIQQ-YVEVVENNVKPERLL 448 Query: 241 HLLKQPE-------ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 293 L++ ++++F + ++ LR G + G+ Q +R+ + + Sbjct: 449 ALMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQ 508 Query: 294 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 GR +++ATDVA+RG+D+ DV +V N+D P + + Y+HRIGRT RAG G A S Sbjct: 509 FKTGRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFS 568 Query: 354 AHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 L ++ + E ++ + E +++ + K + Sbjct: 569 PDKGKLARQLVNCLREANQS--VPEALETIAFANDRSNSGGKGRGKGNYGGKGRG 621 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 152/405 (37%), Positives = 225/405 (55%), Gaps = 11/405 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ F+EL L E LL+AL+D G+ P+ IQAA IPP L GRDVLG A TGTGKTAA+ LP Sbjct: 6 ISPFAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPI 65 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAE 121 L + R + L+L PTRELA+QV++ A H ++ I GG +Y+ Sbjct: 66 LAKIDCNARH----TQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLA 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VV T GR++ +++ + ++LDEAD ML MGF D+E I +T + Sbjct: 122 SLKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQ 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q LFSAT+ AI+ A+ L DP E++ +T I Q Y+ L HK L Sbjct: 182 RQVALFSATMPS-AIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGL-HKLDALTR 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L+ I+F R ++ ELA L G L G++ Q R ++RL +G++++ Sbjct: 240 ILEVEPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDI 299 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI V + LL Sbjct: 300 LVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLR 359 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 + R +PI + P T A ++ + + +++ R ++ Sbjct: 360 AIERATRQPITQMQL----PSTEAVNDSRISRFMERITEAREQEG 400 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 208/376 (55%), Gaps = 6/376 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALD-GRDVLGSAPTGTGKTAAYLLPALQ 64 F + L E +L A+Q KG+ +PT IQ +P AL +D++ A TGTGKTAA+ +P L+ Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + K + +I+TPTRELA+Q+ + + L + I T+ GG + + Sbjct: 80 RIDFKANK---FVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLE 136 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DIVV T GR++ ++ + D VE L+LDEADRMLDMGF D+ I T K+T Sbjct: 137 KGVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRT 196 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ + + D A + +++ + VS + Q Y+ D+ + K LL ++ Sbjct: 197 FLFSATMPKEIV-DIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKD-KLPLLCRIID 254 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 IVF + + V E++ L + G N L G+ Q +R + + + ++ +LV Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGIDI ++HV N+ +PR + Y+HRIGRT RAG+KG AI+ V D+ +V Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374 Query: 365 RYIEEPIKARVIDELR 380 R+ + I I ++ Sbjct: 375 RFAKAKIIKDSIPQVE 390 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 218/377 (57%), Gaps = 4/377 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FSEL L + L+A+ D G+T T IQAAAIP AL G+DVLG A TGTGKTAA+ LP Sbjct: 1 MTEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + L++ R K+ PR L++ PTRELA QV+ + AK T L A + GGV++ + + Sbjct: 61 IDKLMN-GRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKK 119 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRLL + + V+ L++DEADRMLDMGF DIE I T +K Sbjct: 120 LDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKK 179 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA--LLV 240 QTL FSAT+ + I ++ L+DPV + A+ + I Q + + K L Sbjct: 180 QTLFFSATMPPE-ITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALR 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+++ + IVF ++ V +A L+ G + + G++ Q +R + + +G + Sbjct: 239 ALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLK 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVA+DVAARG+DIP VSHVFN+D+P D Y+HRIGRT RAGR G LV D Sbjct: 299 ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGF 358 Query: 361 GKVGRYIEEPIKARVID 377 KV + I +D Sbjct: 359 DKVVKLIGSTPTEEKLD 375 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 150/430 (34%), Positives = 246/430 (57%), Gaps = 7/430 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F+ L++ +QD + PT IQ AIP ++G+D++G A TGTGKTAA++LP L Sbjct: 3 KSFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPIL 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L + R + LILTPTREL++Q++ +L KH ++++ ++ GG Sbjct: 63 NALDEGKR----DIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E IVV T GR+L ++K + + TL+LDEAD+M++MGF +D+E + T ++Q Sbjct: 119 KETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT+ D ++ A R ++ P + + ++I Q+YY + + KT LV +L Sbjct: 179 VLLFSATMP-DLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSD-KTDALVDVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +Q + +IVF + RV +L L+E G++ L G++ Q KR + +K+ E R L+ Sbjct: 237 EQEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLI 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARG+D+ V+HV N+D+P D+Y+HR+GRT RAG+KG AISL+ L+ + Sbjct: 297 ATDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARF 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + + I+ R++ E R A ++ + + RA++ K ++KEK + R+ Sbjct: 357 AKATKASIEERILQEGR-HLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSPVREA 415 Query: 424 KNIGKRRKPS 433 + KP Sbjct: 416 IKKKTKVKPG 425 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 132/394 (33%), Positives = 208/394 (52%), Gaps = 4/394 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++ L++ + GF PT IQ+ A P AL GRD++G A TG+GKT A+LLP+ Sbjct: 383 IMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPS 442 Query: 63 LQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P ++ P +L+L PTRELA+Q+ + + + + + GG + Sbjct: 443 IVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVA 502 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + +IV+AT GRL+ ++ + R V L+LDEADRMLDMGF I I + R Sbjct: 503 ALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 562 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRER-KKIHQWYYRADDLEHKTALLV 240 +QTL+FSAT + +Q A L D ++V + + Q D E K +L Sbjct: 563 RQTLMFSATWPKE-VQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLS 621 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + IVF R+ V +L L+ +G + + G Q +R+ + + G V Sbjct: 622 FLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVP 681 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +++ATDVA+RG+DI D+ +V N+D P + + Y+HRIGRTARAG G + SL+ + L Sbjct: 682 IMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLA 741 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKP 394 ++ + + E K ++ EL + PS K Sbjct: 742 NELIKVLTEA-KQKIPIELSNLSVTPSTSSNTKK 774 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 142/411 (34%), Positives = 220/411 (53%), Gaps = 7/411 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L + S++EA++ GF T IQ IP +G+D++G A TGTGKT A+ +P Sbjct: 1 MALFKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPC 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ + P+ L+LTPTRELA+QV++ +L + + I GG Sbjct: 61 VEQVV----VEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + I+VAT GR + +++ + ++ ++LDEAD ML MGF +DIE I E + Sbjct: 117 LKKRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ ++ A+R + PV ++ + I Q Y + E K L +L Sbjct: 177 QTLLFSATMP-PKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKE-KFDTLCNL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +I+F R + RV EL L G L G+M Q +R++ I++ G ++V+ Sbjct: 235 LDMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ DVSHV NFD+P+ ++Y+HRIGRT RAG+KG + S V + L Sbjct: 295 VATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRY 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 + + +K L R KQ KK + A K+ E ++ Sbjct: 355 IEESTRQKMKQVDAPTLADAMRG-RHKQAVNELKKAVNNAASKQLTGEAKQ 404 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 145/431 (33%), Positives = 228/431 (52%), Gaps = 11/431 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF+EL + +L+A+ D GF PT +Q+ AIP L+ D++ + TG+GKTA + + L Sbjct: 3 NTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSIL 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q + P+ LILTP RELA+QV + R++AK+ I G ++ Sbjct: 63 Q----LTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQIL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++ IV T GR+ +I + + L+LDEADRMLDMGF + I + Sbjct: 119 NKGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERI 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + I + +R + +PV + T+ IHQ YYR + E K L LL Sbjct: 179 TLLFSATMPPE-IHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNE-KNTQLNRLL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + ++F + V + ++L + G ++ L G++ Q KR I++ +G+ ++LV Sbjct: 237 IVEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGI I D+S V N+D+P D Y+HRIGRT RAG +G A SLV D + L ++ Sbjct: 297 ATDVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 +I I ++E P A ++ + + ++ + A ++K + K+ R Sbjct: 357 EEHIGTLI----LEEELPDEEAFTKARE-EAAQWIKANSLKEKAPRSASADSSVKQKRTG 411 Query: 424 KNIGKRRKPSG 434 +N R P+G Sbjct: 412 QNSKSNRIPNG 422 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 200/368 (54%), Gaps = 5/368 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E + ++ ++ +GF +PTAIQA P A+ GRD++G A TG+GKT AY+LPA+ H Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + + PR + G P L+L PTRELA Q+ A E +TH+ I GG A Sbjct: 219 INNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLE 278 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +IV+AT GRL+ +++ + L+LDEADRMLDMGF I I + R +Q Sbjct: 279 RGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQV 338 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLVHL- 242 L++SAT + ++ AE L + ++V+ S I Q D+ E L+ L Sbjct: 339 LMWSATWPKE-VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 397 Query: 243 -LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + T++I+FV ++RV E+ + G C + G+ Q +R+ + GR ++ Sbjct: 398 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 457 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ DV V N+D P + + Y+HRIGRT R+ GTA +L + Sbjct: 458 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517 Query: 362 KVGRYIEE 369 + + + E Sbjct: 518 DLIQVLRE 525 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 139/399 (34%), Positives = 228/399 (57%), Gaps = 11/399 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + T F+ L L +LL A++++G+ +P+ IQ +IP L+G+DVLG A TGTGKTAA+ LP Sbjct: 4 SSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLP 63 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 L + + P++L+L PTRELA QV+ +KH +++ +A+I GG + + Sbjct: 64 LLAR----TQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQF 119 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + VV T GR++ +I+ + ++LDEAD ML MGF D++ + + Sbjct: 120 RALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPE 179 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LFSAT+ I+ AE+ L +P E+ T + I Q Y+ ++ K L+ Sbjct: 180 KRQIALFSATMPKQ-IKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVD-KNQALL 237 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + + E +VFVR ++ E+A+++R G+ L G++ Q +R A+ RL +G+V+ Sbjct: 238 RICETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVD 297 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI V + +L Sbjct: 298 MLVATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRML 357 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL 399 + R + I+ + P + + K+ + + L Sbjct: 358 STIERVTRKKIQQIEL----PTAKEVNAKRRDQFKVRAL 392 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 164/432 (37%), Positives = 232/432 (53%), Gaps = 7/432 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ TF +L L E L A+ G+T PT +Q AIP L GRDV+ +A TGTGKTAA+ L Sbjct: 1 MS-KTFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P + L + P +LI+TPTRELA+Q+ R +AK + + + GGV+Y Sbjct: 60 PTMDRL--GHARHGQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQI 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + D+++AT GRL+ + ++ VETL+LDEADRMLDMGF D+ I Sbjct: 118 DSLRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPT 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QTLLFSAT++ AI+D LL +PV V I Q+ D HK LL+ Sbjct: 178 QRQTLLFSATIDS-AIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDH-RHKNDLLI 235 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL + TR IVF R R RV LR+AG + + Q +R AI+ L G+ + Sbjct: 236 ALLNERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCD 295 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDV ARGIDIP+V++V N DMP + Y+HRIGRT RAG G AIS V + +L Sbjct: 296 ILVATDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAIL 355 Query: 361 GKVGRYIEEPIKARVIDELR--PKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 + + I + I ++ A + K T ++ ++ K ++K + + Sbjct: 356 RDIQKLIGKDIPEMSVESFDSSASDNALAAKATRANAQNDPELATAAREDKSRKKAKSSR 415 Query: 419 RHRDTKNIGKRR 430 R N +R Sbjct: 416 SSRREHNTEDQR 427 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 167/470 (35%), Positives = 245/470 (52%), Gaps = 40/470 (8%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L SLL+++ G+T PT IQA AIP AL+GRD+L SA TG+GKTAA++LP L Sbjct: 71 FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130 Query: 66 LLD---------------FPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIAT 109 L + R++ + LILTPTRELA QV D R+ L Sbjct: 131 LSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVP 190 Query: 110 ITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQ 169 + GG AY + I+VAT GRLL +I + + + L+LDEADRMLDMGFA Sbjct: 191 LVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFAD 250 Query: 170 DIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA 229 DI I T +QT++ SAT +G + AE +DP ++ T I + Y Sbjct: 251 DINAILEATPAHRQTIMSSATWDGP-VGKIAESFTKDPERINIKVETA---HIDEKVYFC 306 Query: 230 DDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNE 289 D+ +HK LL L+ PE ++I+F + E+A L++ CYL G++ Q KRN Sbjct: 307 DNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNR 366 Query: 290 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 349 + L G+ +++VATDVAARG+D+P+++HVFN+D+PR + Y+HRIGR+ RAGR G AI Sbjct: 367 IVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAI 426 Query: 350 SLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPS-------------- 395 +L D G + RY++ I ++ L P+ + GKP+ Sbjct: 427 NLCSRDDRRQFGNIARYLKRDINEAQVEGLEPRF-VEKFEGRGKPNGRDGRGRGRSGSDS 485 Query: 396 --KKVLAKRAEKKKAKEKEKPRVKKRHRDTK---NIGKRRKPSGTGVPPQ 440 + ++ A ++P ++R D N + KP+ + Sbjct: 486 RGGRDDRGSRSQRFAGSSDRPSSERRFADKPRFDNQERYGKPASNDSSAR 535 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 153/408 (37%), Positives = 215/408 (52%), Gaps = 11/408 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +V +F +L L+E LL+A+++ GFT P+ IQ+ AIP L+GRDV+G A TGTGKTAA+ LP Sbjct: 3 SVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLP 62 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 LQ + R + L+L PTRELA+QV++ LAKH + I ++ GG A Sbjct: 63 LLQRIDAADR----SVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQA 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +VV T GR+L +I V +LDEAD MLDMGF +DIE I E Sbjct: 119 SALRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPE 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q+ FSAT+ D I + A R L +P + Q ++ + + Sbjct: 179 WVQSAFFSATMP-DGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPF-RRVDAVC 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + ++IVF ++ V ELA L++ GI L G++ Q +R + R G ++ Sbjct: 237 RIFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGIS 296 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ DV V NFD+P +TY+HRIGRT RAGR G A S D L Sbjct: 297 VLVATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKL 356 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 + R I R + P S +TG+ ++V A A + + Sbjct: 357 RDIQRVTGSRIDRRAM----PTAADASRARTGQLLEEVAAGLASAETS 400 >UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein n=108 Tax=Proteobacteria RepID=A1S988_SHEAM Length = 613 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 228/440 (51%), Positives = 289/440 (65%), Gaps = 8/440 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + +LD LLE+L+ G PT IQ IP A++ RD+L APTGTGKTA++LLPALQH Sbjct: 3 FEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQH 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+DFPR++ G PR+L+LTPTRELA Q+ +A LA + LDI ITGGV Y E+ Sbjct: 63 LIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKS 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N DI+VAT GRLL+Y+ + +F VE L++DEADRMLDMGF + ++ IA E RKQ + Sbjct: 123 NVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQAM 182 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATLEG + FA LL +P+ V + P E+ KIHQW + ADD +HK ALL HLLKQ Sbjct: 183 LFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLKQ 242 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 E R+IVF + R+ V L L++AGI ++ G+M Q KR +A+ R T+G VNVL+AT Sbjct: 243 EEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLAT 302 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARGIDI D++HV NFDMPRS DTY+HRIGRT RAG KGTAISLVEAHD +LGKV R Sbjct: 303 DVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVER 362 Query: 366 YIEEPIKARVIDELRPKTRAPS-----EKQTGKPSKKVLAKRAEKKKAKEKEKPRVK--- 417 YIE+P+K RVI+ELRPK + + + K + + + P K Sbjct: 363 YIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKAKNAKPKAAPGRGPATPNAKTAD 422 Query: 418 KRHRDTKNIGKRRKPSGTGV 437 R D G R TG Sbjct: 423 SRGGDNVRSGGRASTRRTGT 442 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 156/393 (39%), Positives = 209/393 (53%), Gaps = 3/393 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T +F+ L L + LL LQD + PT +Q AIP L G+DV+ A TGTGKTA + LP Sbjct: 33 TSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALP 92 Query: 62 ALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LQ L+ P S R+L+L PTRELA QV K L GGV+ Sbjct: 93 LLQRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQM 152 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + D++VAT GRLL ++ VETL+LDEADRMLD+GFA+++ + Sbjct: 153 MKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPV 212 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QTLLFSAT D I+ A +L PV +S +P KI QW D +K L + Sbjct: 213 QRQTLLFSATFTDD-IRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDK-RNKPDLFM 270 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+ + ++VFV+ R V LA L EAG + G+ Q R A++R G V Sbjct: 271 HLVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQ 330 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+DI D+ V N D+P Y+HRIGRT RAG G A+SLV A + L Sbjct: 331 MLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQL 390 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + I + ++ + R P TG+ Sbjct: 391 AAIEALIGQTLRREEEPGFEAEHRVPETSSTGQ 423 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 132/380 (34%), Positives = 215/380 (56%), Gaps = 8/380 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL + +L A+ D G+ +P+ IQ +IP L+G D++G + TG+GKTAA+ +P +++ Sbjct: 3 FNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIEN 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 + + +G + LIL PTREL +QVS +L K+ + I ++ GG + + Sbjct: 63 I-----EANGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLK 117 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +IVV T GRL+ ++ + ++T++LDEAD M DMGF D++ I T +QT Sbjct: 118 KGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQT 177 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 FSAT+ G IQ+F++ +P EV +I Q+Y + + K L+ LL+ Sbjct: 178 CFFSATM-GPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKE-SMKEEALMRLLE 235 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +A +IVF + +V L L + L G++ Q R++ +K+ + +LVA Sbjct: 236 IHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVA 295 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+D+ DV VFN+D+P+ + Y+HRIGRTARAG+ G + SL+ D+ L ++ Sbjct: 296 TDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIE 355 Query: 365 RYIEEPIKARVIDELRPKTR 384 Y + IK + L R Sbjct: 356 NYTKANIKQMPVPTLVQMDR 375 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 151/443 (34%), Positives = 225/443 (50%), Gaps = 4/443 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++L L E+ L A++ G+ PT +Q AIP L+GRD++ +A TGTGKTAA+LLP Sbjct: 1 MQNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L L R K PR+L+++PTRELA Q+S ++ + T + T+ GG Y Sbjct: 61 LSTLPRGKRGK-RAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINE 119 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRL + + D +++L+LDEADRMLDMGF + I T + Sbjct: 120 IRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADR 179 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT++ +IQ LL DP V + + + Q+ + K LL L Sbjct: 180 QTLLFSATIDH-SIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANF-KKPELLQAL 237 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L++ + R IVF R + R + A L +AG + + QG+R A+ GR ++L Sbjct: 238 LEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSIL 297 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDV ARGID+PDV HV NFD+P + Y+HRIGRT RAG +G A+S V + Sbjct: 298 VATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSD 357 Query: 363 VGRYIEEPIKARVIDELR-PKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I + + ++ T K+ + + A K + R Sbjct: 358 IEKLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKR 417 Query: 422 DTKNIGKRRKPSGTGVPPQTTEE 444 D + R + P + Sbjct: 418 DFERRSDSRAEGRSDNRPGRGKR 440 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 137/428 (32%), Positives = 209/428 (48%), Gaps = 7/428 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + +++ L D+ FT PT IQ P AL GRD++G A TG+GKT AYLLPA+ H Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + P + G P L+L PTRELA QV A + K + L I GG Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +I +AT GRL+ +++ + R L+LDEADRMLDMGF I I + R +QT Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRA--DDLEHKTALLVH 241 L++SAT + ++ AE L D +++ I Q + +HK L+ Sbjct: 274 LMWSATWPKE-VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + + ++I+FV + R +L +R G + G+ Q +R+ + G+ + Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVA+RG+D+ DV V N+D P S + Y+HRIGRTAR+ KGTA + + Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR 452 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 ++ + +EE +A ++ G S+ A + +R R Sbjct: 453 ELIKVLEEANQAINPKLMQLVDHRGGGGGGGGRSRYRTTSSANN--PNLMYQDECDRRLR 510 Query: 422 DTKNIGKR 429 K+ G+R Sbjct: 511 GVKDGGRR 518 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 151/414 (36%), Positives = 227/414 (54%), Gaps = 19/414 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF L L ++L+A+++ G+ P+ IQA IP L+ +DVLG A TGTGKTAA+ LP L Sbjct: 5 VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 ++ P+IL+LTPTRELA+QV++ + AKH +++ + GG +Y Sbjct: 65 NNI----DPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++VAT GRL+ +I A++ L+LDEAD ML MGF D+E I +T K Sbjct: 121 LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ IQ+ + + + +P +V + + Q ++ A HK +V Sbjct: 181 QTCLFSATMPKQ-IQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASI--HKNKAIVRF 237 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + +IVFVR R +LA L G + L G+M Q R ++RL G +NV+ Sbjct: 238 LEAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVV 297 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+D+ +S V N+D+P+ + Y+HRIGRT RAGR G AI V+ ++ LL Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKN 357 Query: 363 VGRYIEEPI-----------KARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 + R+ I + + I+ L+ K E + +V A A+K Sbjct: 358 IIRHTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQK 411 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 218/428 (50%), Gaps = 12/428 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M +EL++ + +AL +G++ T IQA AIP L+G D+LG A TGTGKTAA+ + Sbjct: 1 MKQVLLNELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAI 60 Query: 61 PALQHLLDFPR--KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P LQ L K R L+L PTRELA Q+++ + L I GGV Sbjct: 61 PILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAP 120 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 + DI+VAT GRLL I + D VE +LDE D+MLDMG D++ I Sbjct: 121 QTRKLEKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYL 180 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +Q +LFSAT+ + I+ A+ +L+ PV+++ P I Q Y D +K AL Sbjct: 181 PRERQNMLFSATMPVE-IEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKA-NKAAL 238 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L + LK E +VF R + ++ L + G + G Q R +A+ + + Sbjct: 239 LTYWLKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRK 298 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +LVATD+AARG+DI ++SHV N+++P +TY+HRIGRT RAG G AI+ + + Sbjct: 299 TRILVATDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKP 358 Query: 359 LLGKVGRYIEEPIKARVIDE-------LRPKTRAPSEKQTGKPSKKVLAKRAE-KKKAKE 410 LL + + I + + + PK + + +P K AK A ++ Sbjct: 359 LLRDIQKRIGKTLPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAH 418 Query: 411 KEKPRVKK 418 + KP +K Sbjct: 419 RAKPNPRK 426 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 141/401 (35%), Positives = 217/401 (54%), Gaps = 11/401 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L+L + +A+ G+ +PT IQA IP LDGRDVL + TGTGKTAA+ LP L Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + R+ P++L+L PTRELA+QV+ + +A I GG Y + Sbjct: 366 VDVRSRR----PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLR 421 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++K D +++ L+LDEAD ML+MGF +D++ + ++ +Q Sbjct: 422 RGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV 481 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSATL I+ A+ L DP ++ T + Q + K L +L+ Sbjct: 482 ALFSATLPKP-IRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRD-KIDALTRILE 539 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 E IVF + ++ +A L + G + L G+M Q R I +L G+++VLVA Sbjct: 540 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+P +SHVFNFD+P ++Y+HRIGRT RAGR G AI + L + Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 ++PI+ +ID P +E + + +++ A++ Sbjct: 660 NTTKQPIE--IID--IPTVADINEARVRRFKQRITDVSADQ 696 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 144/391 (36%), Positives = 214/391 (54%), Gaps = 9/391 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+TTF++L L E++L A+ + GF PT IQ AIP L+GRD++G A TGTGKTAA+ LP Sbjct: 3 TMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L H+ + ++L PTRELAMQ + A H + + T+ GG +Y Sbjct: 63 MLAHI----DPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQI 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +VV T GR++ I++ V L+LDEAD ML MGFA+D+E IA Sbjct: 119 KGLKSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPE 178 Query: 181 --RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++ T LFSAT+ D IQ A++ L DPV + + + IHQ Y +HK Sbjct: 179 SGKRITALFSATMP-DFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVP-FKHKLGA 236 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L +L + +IVFVR R E+A + G + G++ Q +R + RL +G Sbjct: 237 LGRVLATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGS 296 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++VLVATDVAARG+D+ + V NFD+PR + Y+HR+GRT RAGR G +++ + Sbjct: 297 LDVLVATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQF 356 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEK 389 L ++ + ++ VI R + + + Sbjct: 357 RLRQIEKLTGTKMEEIVIPSPREVSEFRARR 387 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 159/391 (40%), Positives = 223/391 (57%), Gaps = 7/391 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L L LL+A+ D GF PT IQ AIP L+G +++G APTGTGKTAAYLLP Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ + ++ ++LI+TPTRELA+QV+D +L K+ + + GG A Sbjct: 61 LQRI-----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRG 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + +++V T GR+L +I + F ++ +ILDEAD MLDMGF DIE I R+ Sbjct: 116 LRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATL I+ ++ L V + I Q YY + E K LV + Sbjct: 176 QTLLFSATLPAP-IKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSI 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++IVF R ++RV E+ L G L G+M Q +R + IK G+ +L Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DIPDVSHV NFD+P++ ++Y+HRIGRT RAGR+G AI+L+ + LL Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKA 353 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + I + +K ++ E A +K K Sbjct: 354 IEEAINKRLKREILPEPVDLEEARFKKIAKK 384 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 161/438 (36%), Positives = 230/438 (52%), Gaps = 22/438 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L A+ + G+ T +Q AIP G DVL SA TGTGKTAA+ LP LQ Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62 Query: 66 LLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + + P + R LILTPTRELA QV+D+ +KH ++ + TI GG+ A+ Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLK 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DI+VAT GRLL++I N VE L+LDEADRMLDMGF+ DI+ I ++Q Sbjct: 123 QGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQN 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT A++ A +L+ P +SA+ + Q Y + K LL L+ Sbjct: 183 LLFSATFST-AVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQ-RRKRELLSELIG 240 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF R +L L GI + + GE QG R A++ EG+V VLVA Sbjct: 241 TKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVA 300 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 T+VAARG+DI + +V N+D+P + Y+HRIGRT RAG+ G AIS V + L + Sbjct: 301 TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE 360 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA---KEKEKPRVKKRHR 421 + I + I+ + S+++L K EK+++ K++ V + Sbjct: 361 KLIGQKIRRITVPGYE------------VSSRELLLKTIEKRRSFGKKQERNDNVGAQVV 408 Query: 422 DTKNIGKRR----KPSGT 435 KN+ RR KP+ T Sbjct: 409 GEKNMQGRRVKVGKPTST 426 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 154/447 (34%), Positives = 243/447 (54%), Gaps = 16/447 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL+L++++L+AL D F T +Q IP L G+D+L A TGTGKTAAYLLP L Sbjct: 3 FDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSK 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVA---YMNHAE 121 L D + LI++PTRELA Q+ + + + + + GG Y + Sbjct: 63 LADGGYPEDA-INCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIK 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+++AT GR + +I N D V +LDEADRMLDMGF++DI+ IA + Sbjct: 122 SLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPST 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 QT++FSAT+ I+D A+ LL++P V ++ +KI Q Y + K ++ Sbjct: 182 CQTIMFSATMPSK-IEDLAKTLLKEPEMVKL-AVSKPAEKIQQSAYVCYET-QKIEIIKD 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + K + R I+F +++V ++A+ L IN + ++ Q +R++ + + G+++V Sbjct: 239 IFKAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+ ARGIDI D++ V N+D+P + Y+HRIGRTARA R G AI+ V D Sbjct: 299 LVATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYYFQ 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 ++ ++E+ I+ + E P K G+PSK AK + ++ K +R Sbjct: 359 QIESFLEKTIEKNRLPE--ALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNYR 416 Query: 422 DTKNIGKRRKPSGTGV----PPQTTEE 444 KN ++ +P+ T PQT+E+ Sbjct: 417 RVKN--RQEQPAPTDEKEQHKPQTSEK 441 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 153/437 (35%), Positives = 238/437 (54%), Gaps = 20/437 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF++L+L+ + +A+ + G+ PT IQA AIPPAL GRDVLG A TGTGKTA++ LP Sbjct: 10 MTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPM 69 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + +L R ++ PR L+L PTRELA QV+++ AKH L A + GGV++ + Sbjct: 70 I-TMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQA 128 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + D+++AT GRLL + + V+ +++DEADRMLDMGF DIE I G + + Sbjct: 129 IDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTR 188 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH------KT 236 QTL FSAT+ + I+ L +P ++ + I Q K Sbjct: 189 QTLFFSATMAPE-IERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKR 247 Query: 237 ALLVHLLKQPE--ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 +L + +I+F ++ V +A L++ +N + G++ Q R + Sbjct: 248 DMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGF 307 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 +G + +LVA+DVAARG+DIP+VSHV N+D+P + Y+HRIGRT RAG+ G AI+L Sbjct: 308 RDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVP 367 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 D LG + I++PI P+ AP + T K + +R+ + + +E P Sbjct: 368 SDEKYLGAIEGLIKQPI---------PRAEAPMDAGTPKAETEDKPRRSRRGGRRSEE-P 417 Query: 415 RVKKRHRDTKNIGKRRK 431 + +++ D R + Sbjct: 418 KAEEKQADAAPEPAREE 434 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 139/398 (34%), Positives = 220/398 (55%), Gaps = 4/398 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+ ++L + ++ AL+ G+ PT IQA IP AL+G DV+G A TGTGKTA++++P L+ Sbjct: 13 TFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILE 72 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + + P+ LIL PTRELA+QV D +L++ ++ A + GG + + Sbjct: 73 LL--DIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLK 130 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +VV T GR+L +I D +E ++LDEADRMLD+GF DIE I +QT Sbjct: 131 KGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQT 190 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LL SAT+ I A+R + +P ++ +P+ I Q Y+ + + K LL+ LL Sbjct: 191 LLLSATVPPP-IAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEH-DRKFDLLMKLLL 248 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + E ++IVF R + ++ L + N + G++ QG+R+ + +G V LVA Sbjct: 249 REEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVA 308 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDV RGID+ VSH+ NFD+P D Y+HR+GRT R GR+G A + V + L ++ Sbjct: 309 TDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIE 368 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 I + +K + + P + +V++ + Sbjct: 369 ERINKLLKRDEMRDFEPVGYGERSARAPAAPTQVISGK 406 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 149/391 (38%), Positives = 216/391 (55%), Gaps = 6/391 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F+EL L S++ A+ + GF T IQ AIP A++G+D++G A TGTGKTAA+ +P Sbjct: 1 MVKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPM 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + R S + L++ PTRELA+QV++ + K + I GG + + + Sbjct: 61 VEAI----RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 E IVV T GRLL++++ E + +LDEAD+MLDMGF + E I + R+ Sbjct: 117 LEELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERR 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATL +Q A + L+DP + Q+Y + + K L L Sbjct: 177 QTLLFSATL-SPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPE-KQKFEALTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L Q + +IVFV R RV ELA L E G + L G+++Q +R + + G V++L Sbjct: 235 LDQEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV+NFD+PR D+Y+HRIGRT RAG GTA + V D L Sbjct: 295 VATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEA 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + + I+ I ++ T E K Sbjct: 355 IEQAIDHQITSKPAPGGAESTEKNIEAVIEK 385 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 166/432 (38%), Positives = 242/432 (56%), Gaps = 2/432 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+ L LD L+ AL+ T PT +QA A+P L GRD++ SA TGTGKTAA+LL Sbjct: 1 MQTNAFAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNH 119 PAL LL P +S PRIL+L PTREL QV+ A+E + K +++A++ GG ++ Sbjct: 61 PALSRLLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++ + +++VAT GRL+ ++ D +E L+LDEADRMLDMGF++D+ IA + Sbjct: 121 NQMLTRPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT F+AT+ + DFA+ LL +P ++ T + + I Q DD++HK L+ Sbjct: 181 KARQTAFFTATMTR-RVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLV 239 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H+L QP+ ++IVFV + LA+ L GI L G+M Q R + RL G+ Sbjct: 240 RHILSQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQT 299 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARGID+ +SHV NFD+PR + Y+HR+GRT RAG GTA+SLV D Sbjct: 300 EVLVATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFP 359 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L K+ R+ + + I+ + + + ++ G K R Sbjct: 360 LKKIERFTGQKLIVTEIEGMIARFKPQERREGGGGRGGFGGKPRHGNGQGRSYGDRSSAP 419 Query: 420 HRDTKNIGKRRK 431 +RR+ Sbjct: 420 RGGFGGHQQRRE 431 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 137/433 (31%), Positives = 227/433 (52%), Gaps = 22/433 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ F ++ +L AL+ G+T PT +Q + IP AL+ +D++ + TG+GKTA++ +P Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIP- 59 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + P+ LILTPTRELA+QV + + + + + G ++ Sbjct: 60 ---LCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAE 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + IVV T GR+L +I++ + L++DEAD ML+MGF + +E I + Sbjct: 117 LKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 T+LFSATL D I+ + + +++P + + + I + + E+K +LL + Sbjct: 177 TTMLFSATLPQD-IEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVRE-ENKFSLLKDV 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L I+F R +E V++L + L + G + G M+Q R + + G L Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGIDI ++S V N+D+P ++Y+HR GRT RAG KG AIS V A + L Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + YI I+ K APS+++ + + LAK ++ E +K + ++ ++D Sbjct: 355 IEEYIGFEIQ---------KIEAPSQEEVARKKPEFLAKLNDR---PESKKDKSEELNKD 402 Query: 423 TK----NIGKRRK 431 N GK++K Sbjct: 403 IMKLYFNGGKKKK 415 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 139/405 (34%), Positives = 214/405 (52%), Gaps = 7/405 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L E +L+A+ D GF P+ IQ + IP L+G DVLG A TG+GKTAA+ LP L Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF 123 + P++L++ PTRELA+QV+D K+ I T+ GG Y Sbjct: 66 QI----DPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +VV T GR+L +I+ + + ++LDEAD ML MGF D+E + E Q Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSAT+ + I+ +R + DP EV + I Q + + K L+ L Sbjct: 182 TALFSATMP-EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGV-RKNEALLRFL 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + +I+F R + ++ L + G + L G+M Q R + + RL G ++++V Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + LL + Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 +++ I + +K K +K++ E+ ++ Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRS 404 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 138/413 (33%), Positives = 211/413 (51%), Gaps = 20/413 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L ++EA++ G++ T IQ IP + G+D+ G A TGTGKTAA+ +PA++H Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + + LIL PTRELA+QV ++L+K L + + GG + Sbjct: 63 V----DISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLK 118 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IVV T GR++ ++ + + +ILDEAD ML+MGF +DIE I +QT Sbjct: 119 AGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQT 178 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSATL I A+R +P + + Q+YY + KT ++ ++ Sbjct: 179 VLFSATL-APPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKN-SQKTEIVTQIID 236 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 ++F + +V E+ + L+ G N L G+ Q R E + + +G N+LVA Sbjct: 237 LNNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVA 296 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+ V V N+D+P + Y+HRIGRT RAG+ G + +LV + + L + Sbjct: 297 TDVAARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIE 356 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 RY + I+ K P+ ++ K LA R E EKP +K Sbjct: 357 RYTKATIE---------KAETPTRQELVAYKKDKLATRI----TTELEKPNIK 396 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 139/431 (32%), Positives = 215/431 (49%), Gaps = 12/431 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V F E ++++ + + FT PTAIQA P AL G D++G A TG+GKT +YLLPA Sbjct: 93 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA 152 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P + G P L+L PTRELA QV A E + L I GG Sbjct: 153 IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 212 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I +AT GRL+ +++ + R L+LDEADRMLDMGF I I + R Sbjct: 213 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 272 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLV 240 +QTL++SAT + ++ AE L+D + ++ I Q D+E K L+ Sbjct: 273 RQTLMWSATWPKE-VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVE-KDEKLI 330 Query: 241 HLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L+++ + ++IVFV + R EL +R G + G+ Q +R+ + G Sbjct: 331 RLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHG 390 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + +L+ATDVA+RG+D+ DV V N+D P S + Y+HRIGRTAR+ + GTA + ++ Sbjct: 391 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 + + + E +A + PK E + S+ + +++ K Sbjct: 451 KQVSDLISVLREANQA-----INPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGF 505 Query: 418 KRHRDTKNIGK 428 RD +N + Sbjct: 506 NTFRDRENYDR 516 >UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SB31_CHRVI Length = 454 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 192/431 (44%), Positives = 257/431 (59%), Gaps = 3/431 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T FSE L ++L+ L ++G+T PT +QA IP A+DG D+L SA TG+GKTAA+LLP + Sbjct: 3 THFSEFLLPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIM 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q +D PR G R LIL PTRELA Q+ H L +T L ITGG + + Sbjct: 63 QRFIDVPRH-DGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +N +I+VAT GRLL++++ + R +E L+LDEADRMLDMGFA D+ I +R +Q Sbjct: 122 RKNPEILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 +LLFSATLE + ERLL DP V +P ++ I +D LEHK L+ LL Sbjct: 182 SLLFSATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLL 241 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + ++++F RE L N+L+ L GE+ Q +RN + L GRVN L+ Sbjct: 242 RHETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLI 301 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+P V VFNFD+PR GD YLHR GRT RAG G AISLV + + + Sbjct: 302 ATDLAARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESI 361 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 RY+ + R I+ L+ + P+++ KPSK K A +EKPR K+R RD Sbjct: 362 ARYLNLTFEPREIEGLKASFKGPTKR--NKPSKPAATSGKRKSTAAAEEKPRKKERLRDR 419 Query: 424 KNIGKRRKPSG 434 KNIGKRR P+ Sbjct: 420 KNIGKRRVPTS 430 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 153/439 (34%), Positives = 225/439 (51%), Gaps = 12/439 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L L L A+++ G+T PT IQ AIP GRDVLG A TGTGKTA++ LP + Sbjct: 1 MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 +L + K+ PR LIL PTRELA QVS++ K+ L +A + GG + +V Sbjct: 61 D-ILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+++AT GRL+ + + R V+ L++DEADRMLDMGF D+E I +Q Sbjct: 120 DRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TL FSAT++ + I+ A+ L +P EV P+ + + + Q E K L LL Sbjct: 180 TLFFSATMDKE-IRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASE-KREALRQLL 237 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ T + +F ++ V L L G + L G+M Q R E +++ V ++V Sbjct: 238 RRETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMV 297 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 +DVAARGID+ +VSHVFNFD+P + Y+HRIGRT RAGR G A +L D L + Sbjct: 298 CSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAI 357 Query: 364 GRYIEEPIK---------ARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 + + I V D + G + R + + + E+P Sbjct: 358 ENLLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERP 417 Query: 415 RVKKRHRDTKNIGKRRKPS 433 R R + +P+ Sbjct: 418 RPLAPERAANDQAPVERPA 436 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 141/393 (35%), Positives = 215/393 (54%), Gaps = 10/393 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+ +F L L E+ + L++ GF PT IQ AIP L+G DVLG + TGTGKTAAY L Sbjct: 1 MTI-SFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L+ + + ++LILTPTRELA QV++ ++ L I T+ GG + Sbjct: 60 PILEKV----DIQDPSVQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVV T GR++ I+ + ++ +LDEAD ML MGF D++ I +T Sbjct: 116 RSLERGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPE 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + T FSAT+ + I++ + L+ PV +S + +I Q Y K L Sbjct: 176 SRSTACFSATMPRE-IRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQ 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + +I+FVR ++ +L L+E G G + Q +R + R +GR+ Sbjct: 235 PVLEIEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIK 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 ++VATD+AARG+D+ +SHV N+D+P + +TY+HRIGRT RAG+ G AIS+VE+ D ++ Sbjct: 295 LVVATDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMI 354 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 ++ R + + I I P K+ GK Sbjct: 355 RQIERKLRQKIDICKI----PNRSEVEAKRLGK 383 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 143/415 (34%), Positives = 213/415 (51%), Gaps = 4/415 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L + L+ A+ +G++ T IQ AIP L D+L A TGTGKTAA+ LP L Sbjct: 1 MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L K R LI+TPTRELA QV+ + ++ + GGV Sbjct: 61 QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E D+++AT GRLL ++ +E L+ DEADRMLD+GF D++ I ++Q Sbjct: 121 QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT I+ FA +L P + + + Q ++ + K+A L+ L+ Sbjct: 181 TLLFSATF-SKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQA-RKSAALIQLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +Q ++++VF+R + L L +AGI + Q R +A+ G + VLV Sbjct: 239 QQHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ + V N+D+P + Y+HRIGRT RAG GTAISL + L + Sbjct: 299 ATDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSL 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 RY+++ +K + PK + K + +V AEK ++ E + K Sbjct: 359 ERYLDQHLKPSTLVGFAPKDQVTKSWSANKANTRV--NSAEKPTSRNMENTKHVK 411 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 147/449 (32%), Positives = 230/449 (51%), Gaps = 19/449 (4%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ T F + + L + LQ G T PT +Q AIP L G+DV+ A TGTGKT A+ L Sbjct: 1 MS-TEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P LQ + + + LILTPTRELA+Q++ ++LA + GG Sbjct: 60 PILQRIDIDKEQ----VQALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + IVVAT GRL+ +++ E + ++ L+LDEAD+ML MGF ++++I +T Sbjct: 116 RKLNNSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPR 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT+LFSAT+ D I+ AE ++ PV++ + I Q D + L+ Sbjct: 176 ARQTMLFSATMP-DQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTD-RGRQKALI 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +++ +++F R + R +L L++ G + L G++ Q KR + +KR + ++ Sbjct: 234 SMIETQRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQ 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ V+HVFNFD+P + Y+HRIGRT RAG++GTAI++ +D + Sbjct: 294 ILVATDVAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAV 353 Query: 361 GKVGRYIEEPIKARVI--DELRPKTRAPSEKQTGKPSKK----------VLAKRAEKKKA 408 + R I ++ R I D K AP GK K + + Sbjct: 354 AHIERSINAILERRTIEADGTIVKNTAPRSSSEGKSYDKKPDRGGRGRGGRDSKPAQGGR 413 Query: 409 KEKEKPRVKKRHRDTKNIGKRRKPSGTGV 437 + + + G R KP V Sbjct: 414 GGRGERNERGAGAGRSQAGGRGKPERAAV 442 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 153/452 (33%), Positives = 221/452 (48%), Gaps = 12/452 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T+ F E L AL G+ PT IQ A+PP L+GRD+LG A TG+GKTA ++L Sbjct: 23 LTIENFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVL 82 Query: 61 PALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P LQ + L+L PTRELA+Q+ LA++ + A + GGV+ Sbjct: 83 PLLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQ 142 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++VAT GRLL I D VETL+LDEADRM DMGF +DI+ I Sbjct: 143 INALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLP 202 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++T LFSAT+ + I+ FA +L++P V + + +I Q E K + L Sbjct: 203 EARRTALFSATMPVE-IKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTE-KQSRL 260 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L R IVF R + +A L AGI+ G Q R A+ G + Sbjct: 261 HTILADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHI 320 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ +++HV NFDMP +TY+HR+GRTAR G G AISL + + Sbjct: 321 RVLVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQE 380 Query: 360 LGKVGRYIEEPI--------KARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 + + R +++ + +A + E R RA + + + A + + Sbjct: 381 ITAIERMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHHHAGGRRDGREGGQ 440 Query: 412 EKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTE 443 R + HR+ P+ G + E Sbjct: 441 RGERPARPHRNGDERA-NASPARNGENRRPYE 471 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 209/375 (55%), Gaps = 6/375 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T FS L L ES+++AL + GF +PT IQ +IP LDGRD+L A TGTGKTAA+ LP Sbjct: 3 TAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLP-- 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+D + + L+L PTRELA+QV + +KH+ + + I GG Sbjct: 61 --LVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 IVV T GR+L ++ + D A+ TL+LDEAD+MLDMGF ++++ I +Q Sbjct: 119 RAGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 + FSATL +I+ A R L P+ ++ R+ I Q Y + +++ L +L Sbjct: 179 LVFFSATLPA-SIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVN-FKNRAQALTRVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +++F R ++ ELA L++ G L G++ Q R + R ++NV+V Sbjct: 237 AAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI D+SHV N+DMP+ G++Y+HRIGRT RAGR G AIS D L + Sbjct: 297 ATDVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLI 356 Query: 364 GRYIEEPIKARVIDE 378 R + I Sbjct: 357 ERATGSTLVPAKIPS 371 >UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=Gammaproteobacteria RepID=A0KXT6_SHESA Length = 491 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 150/418 (35%), Positives = 222/418 (53%), Gaps = 2/418 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+L L +L++A+ + G+T PT IQ AIP L G++VL +A TGTGKTA+++LP L Sbjct: 3 FSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 D P+ + R +ILTPTRELA+QV ++ + AK+ L + GGV + E Sbjct: 63 FADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D++VAT GRLL + V L+LDEADRMLDMGF +DI I + ++Q L Sbjct: 123 GVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNL 182 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL ++ A+ + D +E+ + + I QW D + K+ALL HL+++ Sbjct: 183 LFSATL-SKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDK-DKKSALLSHLIQE 240 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +++++F++ + +L + L + GI Q R + + G+V+ LVAT Sbjct: 241 QNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVAT 300 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 VA+RGIDI ++ V N+D+P D Y+HRIGRT RAG +G AIS V D L + R Sbjct: 301 GVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + I R I PK P P +R A+ + R + Sbjct: 361 RLGHVIVRREIAGFEPKKVVPISILDFVPKSASKTERKPNSPAETNLQSRPYSSGKPG 418 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 142/394 (36%), Positives = 203/394 (51%), Gaps = 15/394 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L L LL+ L+ G+ PT IQA +IP LDG DVLG+A TGTGKTAA+ LP Sbjct: 1 MNKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPRKKSGPPR------------ILILTPTRELAMQVSDHARELAKHTHLDIATI 110 LQ + + +++ P + L+L+PTREL+ Q+ + R K T L I Sbjct: 61 LQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVI 120 Query: 111 TGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 GGV D +VAT GRLL + + D + VE L+LDEAD MLDMGF D Sbjct: 121 FGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPD 180 Query: 171 IEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD 230 ++ I +Q LLFSAT+ G I+ A+ +L DPV + P ++I Q Sbjct: 181 VKRILKFLPRDRQNLLFSATMPGP-IRKLADEILVDPVTIQIAPQKPTVERIEQSICFVA 239 Query: 231 DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 290 + K LL H ++ ++VF R + +A L +AG+ + G Q R Sbjct: 240 QAD-KPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 298 Query: 291 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 350 + + ++VLVATDVAARGIDI + V N+D P + + Y+HRIGRT RAGR+G + Sbjct: 299 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 358 Query: 351 LVEAHDHLLLGKVGRYIEEPIKARV-IDELRPKT 383 H+ + R I+ I + +P+ Sbjct: 359 FCGGHETKFFIAIEREIKLQIPVATGLPGCQPRP 392 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 230/423 (54%), Gaps = 17/423 (4%) Query: 22 KGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHL--LDFPRKKSGPPRI 79 + P+ IQ AIP + GRD+ G A TGTGKTAA+ LP LQ L D K + Sbjct: 1 MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60 Query: 80 LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQ 139 LIL PTRELA+Q+++ + +L A I GGV + + D+++AT GRL+ Sbjct: 61 LILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLID 120 Query: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDF 199 + D + VE L+LDEADRMLDMGF +DI I R QT+LFSATL D I+ Sbjct: 121 LYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLP-DEIKHL 179 Query: 200 AERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRE 259 LL DP+++ + +KI+Q Y D + +K LL+ LL+ P+ +IVFVR + Sbjct: 180 VSDLLNDPLKIMISSGNVTVEKINQSLYFVDKV-NKAKLLIKLLENPQIYNAIVFVRTKR 238 Query: 260 RVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSH 319 V L L +A I + G+ Q R A+ +V VLVA+D+AARGIDI +++H Sbjct: 239 NVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTH 298 Query: 320 VFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE---------- 369 V NFD+P + Y+HRIGRTARAG G AI+ + LL + ++I + Sbjct: 299 VINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNPYY 358 Query: 370 PIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKR 429 P+K I E + K++ E Q + K L K+ +KK + +KK + ++ KR Sbjct: 359 PMKDLSIPEKKHKSKKKGETQKSRDKAKHL-KQGQKKLSVRTN--NIKKNSKTKRSNFKR 415 Query: 430 RKP 432 R+P Sbjct: 416 RRP 418 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 148/450 (32%), Positives = 231/450 (51%), Gaps = 19/450 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L + E + L T PT +Q AIPP L RDV+ A TGTGKT A++LP L+ Sbjct: 5 FAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILER 64 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + + + LI+TPTRELA+Q++ ++LA+ ++I GG Sbjct: 65 V----NVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKG 120 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 + I++ T GRLL +++ + + + L+LDEAD+ML MGF +D+E I R+Q + Sbjct: 121 SIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNM 180 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ + ++ AE+ ++DPV++ +I Q D K LL L + Sbjct: 181 FFSATMP-NQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTD-RGKQDLLCQLFDE 238 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +I+F R + R L L G N+ L G++ Q KR + +K + ++ LVAT Sbjct: 239 YNPFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVAT 298 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DI V+H+FN+D+P+ G++Y+HRIGRT RAG G AI+ + + D L + + Sbjct: 299 DVAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEK 358 Query: 366 YIEEPI--------KARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 I+ + K + +E + ++P + K K +KK +K R Sbjct: 359 VIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKDFKKGKYGDKKGKPGDKKGRPG 418 Query: 418 -KRHRDTKNIG----KRRKPSGTGVPPQTT 442 KR R T G KR +PS P Sbjct: 419 DKRDRPTDKKGRPGDKRDRPSDNKGRPGDK 448 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 144/424 (33%), Positives = 217/424 (51%), Gaps = 3/424 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 ++F+ DE L+ ++ +T+PT IQ +P AL GRD++G A TG+GKTAA++ P L Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312 Query: 64 QHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 H++D + G P +I+ PTREL Q+ + K +L + GG + A+ Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 E +IVV T GRL+ ++K++ + + V L+ DEADRM DMGF + IA R + Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR 432 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV-H 241 QTLLFSAT I+ A +L DP+ V + + Q K L Sbjct: 433 QTLLFSATF-RKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L++ + ++FV K+ ELAN L++ G N L G+M Q +RN+ I + + V Sbjct: 492 LVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DIP + V N+D+ R DT+ HRIGRT RAG KG A +L+ D G Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + R +E + + L + +++ K +E+P + + Sbjct: 612 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM 671 Query: 422 DTKN 425 D N Sbjct: 672 DRGN 675 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 145/435 (33%), Positives = 234/435 (53%), Gaps = 9/435 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F +L + + LL A++D G+ +PT IQ AIP L DV +A TGTGKTAA+ L L Sbjct: 1 MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L K R L++ PTREL++Q+ + + AK+ ++IA + GG + ++ Sbjct: 61 QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKIL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E DIV+AT GR+L+++ + VE +LDEADRMLDMGF ++I I R Q Sbjct: 121 KEGVDIVIATPGRVLEHVDKG-LSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT D ++ ++ +L P + + I+Q Y D E K LL +++ Sbjct: 180 TLLFSATF-SDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVD-TEKKAPLLAYII 237 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +VF R + L L++ G+ + G+ Q R + + EG++ VLV Sbjct: 238 GSRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLV 297 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+A+RG+DI ++ V N+++P + Y+HR+GRT RAGR G AISL++ ++ + + Sbjct: 298 ATDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDI 357 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + I I +I P P+ ++ + K+ ++E KK + K + + +K+ + Sbjct: 358 EKLIGMKIPQEIIAGFEP---DPTIRRLDQDELKL---KSEHKKVEVKHERKPRKKEDGS 411 Query: 424 KNIGKRRKPSGTGVP 438 K +KP T Sbjct: 412 KKSANYKKPVTTKKR 426 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 147/375 (39%), Positives = 204/375 (54%), Gaps = 7/375 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L + L E LQ G+ T IQA IP L+GRDV+G A TGTGKTAA+ LP L + Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 + K P+ L+L PTRELA QV++ R + L I +I GG + Sbjct: 71 I----DVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLR 126 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E IVVAT GRLL +I+ + D + ++LDEAD ML MGF D++ I +T ++ Sbjct: 127 EGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKV 186 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ ++D A + L +P E+S + + I Q Y+ A K L LL Sbjct: 187 ALFSATMPK-RVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGAS-KLEALKRLLA 244 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + IVF R RE +A LR+ G+ L G+M Q R + L G ++VLVA Sbjct: 245 FEDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVA 304 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ ++HV N+D+P + Y+HRIGRT RAGRKG AI V + +L + Sbjct: 305 TDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIE 364 Query: 365 RYIEEPIKARVIDEL 379 R + I + + Sbjct: 365 RLTRQSIPEIKLPSV 379 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 6/417 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F+ + +D + L G P+ IQ +IP + GRD+LG A TGTGKTAA+ LP L Sbjct: 67 TAFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPML 126 Query: 64 QHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LL+ RK + R LIL PTRELA Q++++ A T + + GG + + Sbjct: 127 TRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQR 186 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRL+ I+ D L+LDEAD+MLD+GF + IA + Sbjct: 187 LERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRER 246 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ +++ A+ L DP+ V+ NP + +KI Q + + + K LL Sbjct: 247 QTLLFSATMPK-LMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGD-KATLLAEY 304 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + +IVF R + +L L + G + G QG+R A+ G VL Sbjct: 305 LSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVL 364 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DIP V+HV+N+D+P + Y+HRIGRTARAGR G AI+ + L Sbjct: 365 VATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRA 424 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + ++ I V+ P A ++ G P+ + ++ + P+ +R Sbjct: 425 IEKAMKAKI--AVVGGEEP-FEAAKIRERGGPAGRPAQGARKRPARRPSRAPKTAQR 478 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 167/439 (38%), Positives = 236/439 (53%), Gaps = 9/439 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+ TFS L+L SL + L++ GF RPT IQ AIPPAL+GRDVL A TG+GKT A+LL Sbjct: 1 MTM-TFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L L+ PR G R L+LTPTRELA Q+ + +++ HT L A + GGV Sbjct: 60 PILHQLMSKPR---GNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQE 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR- 179 F D++VAT GRLL + ++ +E L+LDEADRMLDMGF +I+ I Sbjct: 117 HAFRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPN 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++QTL FSAT+ I + +L PV ++ K I Q Y E K+ALL Sbjct: 177 RKRQTLFFSATMPPP-IAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQ-ELKSALL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 V LLK+ + +++VF R + R + LA+ L AGI + G Q +R +A+ +G Sbjct: 235 VALLKRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSY 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ + HV NFD+P + + Y+HR+GRTARA G A + V + Sbjct: 295 QVLVATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGE 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L + R I+ + + + A ++ P + +A+ +KK R Sbjct: 355 LKLIERAIKRALPRVTVPDFD--YHAKPTQKLEVPIAERIAEIRKKKAEDRARAAAKVAR 412 Query: 420 HRDTKNIGKRRKPSGTGVP 438 + RK + P Sbjct: 413 RTAAQESEAARKSAKDAKP 431 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 154/401 (38%), Positives = 230/401 (57%), Gaps = 7/401 (1%) Query: 19 LQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFP----RKKS 74 + KG+ +PTAIQA AIP L GRD++ SA TGTGKTAA+ LP LQ L+D + K+ Sbjct: 40 VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99 Query: 75 GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134 +L+L PTRELA+QV+ + + A +T + I GGV+ A + D++VAT Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159 Query: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGD 194 GRLL +++ + +E L+ DEADRMLDMGF +I I + ++QTLLFSAT Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSS- 218 Query: 195 AIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVF 254 AI + +++LL+ P+ + + + I Q Y D E KT LL HL+ + + +VF Sbjct: 219 AIFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVD-SERKTELLCHLINKSAWQQVLVF 277 Query: 255 VRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 314 RK++ +A + AGI G++ QG R + + +G++ LVATDVAARG+DI Sbjct: 278 SRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDI 337 Query: 315 PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKAR 374 ++ V N+++P + Y+HRIGRT RAG G AI+L D LLL +V I++ + + Sbjct: 338 VELKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQQ 397 Query: 375 VIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 ++ P E T K SK +RA+K+ ++ R Sbjct: 398 WLEGFEPDL-TKLEPVTRKNSKAAQRQRAKKRALGADKRRR 437 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 148/431 (34%), Positives = 226/431 (52%), Gaps = 5/431 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M ++++ L + AL+ + +P+ IQAA IP AL+GRDVLG A TGTGKTAA+ + Sbjct: 1 MADINYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ L P ++ P+ LILTPTRELA+QV D +L +++ + GG + Sbjct: 61 PIIERLEHGPNSRN--PQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQM 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E IVV T GR++ + + T++LDEADRMLD+GF DIE I Sbjct: 119 EKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPE 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLL SAT+ I+ A+R + +P +V +P+ + I Q Y+ D K +LV Sbjct: 179 ERQTLLLSATVP-PTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDH-SKKFDMLV 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LLK+ + ++IVF R + + L + + G+M QG RN A+ + Sbjct: 237 ELLKREQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFR 296 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDV RGIDI DVSH+ N+D+P D Y+HR+GRT R G++G A + V + L Sbjct: 297 VLVATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNEL 356 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 ++ I++ + + P R + G P+ + +K+ E+P+ + Sbjct: 357 TRIEVRIDKLLIRDELPGFAPYERTDVDTGPG-PAATAIGPDGQKEVGMVTEEPKAEPPK 415 Query: 421 RDTKNIGKRRK 431 + RK Sbjct: 416 SLKSRAKRYRK 426 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 151/430 (35%), Positives = 228/430 (53%), Gaps = 18/430 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + ++S+L +L +KG+ PT IQ AAIP + GRD+LG A TGTGKTAA+ LP ++ Sbjct: 53 FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMNHAEVFS 124 L D + ++L++TPTRELA QV++ + + T+ I GG Y N Sbjct: 113 LADNKELNA---KVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALK 169 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+VV T GR++ +I++ F ++ L+LDEAD ML+MGF +DIE I + KQ Sbjct: 170 RKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQM 229 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ + I++ A++ L DP E+ +E + I Q + HK L +L+ Sbjct: 230 VLFSATMPNE-IRNIAKKYLNDPAEILIKSVKKETQLISQKFLYV-QRHHKLDALKRILE 287 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+FVR + +A L G + L G++ Q +R + RL +G +++LVA Sbjct: 288 LNNEG-VIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V N+D P +TY HRIGRT RAGR G AI V + L + Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLE 406 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK------PRVKK 418 I+ I P + +EK+ K + V K+ +E + +K+ Sbjct: 407 NSTRTKIEEINI----PSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKE 462 Query: 419 RHR-DTKNIG 427 +H D NI Sbjct: 463 KHSMDDSNIA 472 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 131/375 (34%), Positives = 200/375 (53%), Gaps = 5/375 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L L++A+ G+ PT IQ IPPAL G+DV+G A TGTGKTAA+L+P L Sbjct: 88 FADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLNR 147 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 K P +++TPTRELA+Q+++ A +LA + GG + + Sbjct: 148 WRPHTLK---GPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDGLTR 204 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D+VV T GR+L +++ + V +LDEADRMLD+GF DIE I +QTL Sbjct: 205 GCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTL 264 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 L SAT+ D+I+ R + DPV + P KI Q Y+ D + K LL ++++ Sbjct: 265 LMSATVP-DSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQ-DRKFELLKRVVER 322 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + + ++FV ++ L L+ A + G++ Q +R + + + L+AT Sbjct: 323 EKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIAT 382 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DV +RGID+ +SHV N+D+P + Y+HRIGRT R G+ G AIS V L + Sbjct: 383 DVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEM 442 Query: 366 YIEEPIKARVIDELR 380 I I+ ++ Sbjct: 443 MINRLIEEDRVEGFE 457 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 146/368 (39%), Positives = 209/368 (56%), Gaps = 3/368 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT+F DE LL+A++ +T+PT IQA A+P AL GRD++G A TG+GKTAA++ P Sbjct: 264 VTSFGHFGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPL 323 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL+D + G P LIL PTREL++Q+ + A++ K +L++ GG + ++ Sbjct: 324 LMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 383 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + +IVVAT GR++ +K + + + V L+LDEADRM MGF + I R Sbjct: 384 ALEQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPD 443 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK-TALLV 240 +QTLLFSAT I+ A +L DPV + + I Q + + K LL Sbjct: 444 RQTLLFSATF-KKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLC 502 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+K ++FV K+ +AN L N L G+M Q RN+ I + + + Sbjct: 503 HLVKFLSEGSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECD 562 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+DIP + +V N+D+ R DT+ HRIGRT RAG KG A +LV D Sbjct: 563 ILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFA 622 Query: 361 GKVGRYIE 368 G + R +E Sbjct: 623 GHLVRNLE 630 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 137/365 (37%), Positives = 200/365 (54%), Gaps = 5/365 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F EL + + +E L+ GFT PT IQA AIP L GRDV+G + TGTGKTAA+ LP L+ Sbjct: 4 SFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILE 63 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + + ++LTPTRELA+QV D + ++ L I GG + Sbjct: 64 RL----DPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLK 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IVV T GR++ ++ N V+ +LDEAD ML MGF D+E I + +QT Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ +I+ + L PV V+ KI+Q Y K L +L+ Sbjct: 180 ALFSATMP-PSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILE 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +++FVR R EL + L+ AG + G++ Q R + R +V +VA Sbjct: 239 MEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVA 298 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+D+ +SHV N+D+P S +TY+HRIGRT RAG++GTAI+LV+ + Sbjct: 299 TDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFE 358 Query: 365 RYIEE 369 R++ + Sbjct: 359 RHVRQ 363 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 148/373 (39%), Positives = 222/373 (59%), Gaps = 7/373 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++L L ES+L+++ + GFT P+ IQ AIP L GRDV+ A TGTGKTAA+ LP + Sbjct: 23 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 82 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L K + L++TPTRELAMQ+SD +L KHT + GG + E Sbjct: 83 NL-----KNNHTIEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIK 137 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +N +++AT GRLL ++K + + ++LDE+D MLDMGF DIE I Q Sbjct: 138 KNPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQI 197 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + I+ A+++LE+P+++ PS I Q +Y ++ E ++ ++HLL Sbjct: 198 LLFSATMP-EPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHE-RSEAIMHLLD 255 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +SIVF R ++ EL +L + L G+M Q R +I + +VLVA Sbjct: 256 TQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 315 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVA+RG+DI VSHVFN+ +P + ++Y+HRIGRT RAG+KG AI+LV ++ L ++ Sbjct: 316 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 375 Query: 365 RYIEEPIKARVID 377 + I+ I+ I Sbjct: 376 KEIDSEIELFEIP 388 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 205/379 (54%), Gaps = 6/379 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F+ L + +LL L + G+ PT IQ AIP L GRD+LG A TGTGKTAA+ LP Sbjct: 6 SSASFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALP 65 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 LQ L + + P L+L PTRELAMQV++ + + + ++ GG + Sbjct: 66 LLQRL-EIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLR 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VVAT GR L +I + T++LDEAD MLDMGFA+ +E I T Sbjct: 125 ALRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGA 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRER---KKIHQWYYRADDLEHKTAL 238 +QT+LFSATL I A R L +PV V ++ Q Y HK+A Sbjct: 185 RQTVLFSATLP-PRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRA-HKSAA 242 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L +L + + +I+F R R V EL LR G L G Q R+ + R G Sbjct: 243 LTRVLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGT 302 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +LVATDVAARG+DI VSHV N+D+P + + Y+HRIGRT RAGR+G AI+LVE +H Sbjct: 303 AELLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHY 362 Query: 359 LLGKVGRYIEEPIKARVID 377 L+ V R + I+A + Sbjct: 363 LIRNVERLTGQRIEAATLP 381 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 219/413 (53%), Gaps = 6/413 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF++L L +LEAL+D G+ P+ IQ AIPP L G D++G A TG+GKTAA+ LP Sbjct: 1 MTTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++++ R + L+LTPTREL +QV+ R +D+ + GG + Sbjct: 61 MEYVDPSDR----DVQALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQ 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 IVV T GR+ I + ++LDEAD MLD+GF +D+E I T + Sbjct: 117 LRAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSR 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ + I+ +ER L +PV V +T + Q+ + K +L + Sbjct: 177 QTALFSATMPPE-IRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRD-KPDMLGTV 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + ++IVFVR + R +L LR+ G+N L G+M QG+R+ + GR+ +L Sbjct: 235 LESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV NFD+P S D Y+HRIGRT R GR G AI+ ++ + Sbjct: 295 VATDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEA 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + R+ P+ R + + + A + A + + R Sbjct: 355 IERHTRTPMAPWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTR 407 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 157/451 (34%), Positives = 234/451 (51%), Gaps = 28/451 (6%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+V + L LL+A++ G+ T IQ AIP G D+L SA TGTGKTAA+ L Sbjct: 1 MSV---DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSL 57 Query: 61 PALQHLL------------------DFPRKKSGPPRILILTPTRELAMQVSDHARELAKH 102 P L + + R LILTPTRELA QV+D+ ++ +++ Sbjct: 58 PILDAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQY 117 Query: 103 THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRM 162 + + GG + ++ + D++VAT GRLL+++ N D V+ L+LDEADRM Sbjct: 118 LPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRM 177 Query: 163 LDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKI 222 LDMGF DIE + + + QTL+FSAT D ++ A +LL+ P +S + KI Sbjct: 178 LDMGFLTDIEKLLLAVKHKHQTLMFSATF-SDRVKSLANQLLKSPKTISVSKENTTSGKI 236 Query: 223 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEM 282 Q Y + E K LL L+ + +VF +E + LA L+ GI G+ Sbjct: 237 KQAVYWVTE-ERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDK 295 Query: 283 VQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA 342 QG RN+A+++ +EG+V VLVATDVAARG+DIPD++ V NF +P + Y+HR+GRT RA Sbjct: 296 TQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRA 355 Query: 343 GRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDE-----LRPKTRAPSEKQTGKPSKK 397 G+ GTAISLV D L + + IE + V L + + ++ Sbjct: 356 GKSGTAISLVSPKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKRDSKNRY 415 Query: 398 VLAKRAEKKKAKEKEKPRVKKRHRDTKNIGK 428 A+ + AK+ K + +++ + K Sbjct: 416 RAAQEKNQNLAKKDVKIKSLSKNKTARTNSK 446 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 131/402 (32%), Positives = 211/402 (52%), Gaps = 6/402 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F++L L + +A++ GF T IQA +IP G DV+G + TGTGKT A+ + Sbjct: 1 MNSIPFAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGV 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 PA++ + + ++LIL PTRELA+Q ++AK+ + I GG Sbjct: 61 PAVELIDT--EELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQ 118 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +IVV T GR++ +++ ++ +ILDEAD ML+MGF +D+E I +T Sbjct: 119 IMRLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTP 178 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT+ AI ++ +DP + N I Q +Y + K L Sbjct: 179 DERQTILFSATMP-PAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVP-MGRKMDAL 236 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L+ + SI+F + V E+ +L +G + L G+M Q +R + + GR Sbjct: 237 GIILQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRT 296 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHL 358 +LVATDVAARGID+ +V +V N+D+P++ + Y+HRIGRT RAG++G A+++ Sbjct: 297 KILVATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVD 356 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 L + R + IK + + R +E + +K+ A Sbjct: 357 ELYHIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAA 398 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 154/440 (35%), Positives = 227/440 (51%), Gaps = 7/440 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+ TF E L + L A+ D G+ PT IQ AIP L+GRD++ +A TGTGKTAA+ LP Sbjct: 5 TIATFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + L K P ++I+TPTRELAMQ+S+ +AK T+ + T+ GGV+Y + Sbjct: 65 TMDKLPYAG--KGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIK 122 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DI++AT GRLL +++ D V+ L+LDEADRMLDMGF + I T Sbjct: 123 KLRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSE 182 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFSAT++ LL P + + + Q+ E K ALL Sbjct: 183 RQTLLFSATIDRSQ-DKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRRE-KPALLNA 240 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +++ R IVF + + L + GI + + Q +R A++R EG+ +V Sbjct: 241 FIREKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHV 300 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 +VATDV ARGID+P+V +V N+D+P + Y+HRIGRT RAG G A+S V LL Sbjct: 301 IVATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLR 360 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + ++I E I+ + S++ A + + + K +K K R Sbjct: 361 SIQKFIGEDIQVMEFKAGEDAYEPVGKDHALAASEEEHAPKRKDRDKKNGKKGGRKHDDR 420 Query: 422 DTKNIGKR---RKPSGTGVP 438 K G++ R+ + P Sbjct: 421 GGKKGGRKHDDREGARDDAP 440 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 151/396 (38%), Positives = 219/396 (55%), Gaps = 7/396 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T F L L + +A+++ G+ PTAIQ+ IP L GRD+LG A TGTGKTAA+ LP Sbjct: 7 TSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALP 66 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L L RK P++L+LTPTRELA+QV++ + A ++ I GG Y Sbjct: 67 MLSRLDPDLRK----PQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQL 122 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N ++V T GR++ +I+ ++ L+LDEAD ML+MGFA+DI+ I + Sbjct: 123 SQLKRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPA 182 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q LFSAT+ AI+ A+ L DPVEV ++ I Q + HK +L Sbjct: 183 ERQVALFSATMP-PAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRF-HKLDVLT 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +++ ++FVR + ELA+ L+ G L G+M Q R ++RL +G+++ Sbjct: 241 RIMELEPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLD 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ +SHV N+D+P Y+HRIGRT RAGR G AI LVE + LL Sbjct: 301 VLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 + R I PI + + + ++ G+ K Sbjct: 361 KSIERVIRRPIPSMEPPSAAALSESRIDRFIGEIRK 396 >UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4EAF2_9ACTN Length = 749 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 165/472 (34%), Positives = 231/472 (48%), Gaps = 38/472 (8%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L + +L A+++ G+T PT +QA +IP L+GRD+L +A TGTGKTAA+LLP + + Sbjct: 48 FDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNN 107 Query: 66 L--------------------LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL 105 L P P +L++TPTRELA Q+ + A ++A T Sbjct: 108 LEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGH 167 Query: 106 DIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDM 165 T+ GGV+Y DI+VAT GRL+ I++ V+ L+LDEADRMLDM Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDM 227 Query: 166 GFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 GF + I ET +QTLLFSATL+ +A+ + L+ DP V P+T + Q+ Sbjct: 228 GFLPAVRRIVRETPAERQTLLFSATLDEEAVGEIT-DLVSDPARVEIAPATSTADTVDQF 286 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 + +E K LL LK+ R+IVF+R + R L GI + G Q Sbjct: 287 VFPVS-IEAKNNLLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQA 345 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 +R A+ +G V+VLVATDV ARGIDI DV +V NFD+P Y+HRIGRT RAG Sbjct: 346 QRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGEL 405 Query: 346 GTAISLVEAHDHLLLGKVGRYIEE-------------PIKARVIDELRPKTRAPSEKQTG 392 G AI+ V D ++ + +++ P V E P +K Sbjct: 406 GWAITFVTEQDVDEFYEIEKLMDKTADIYDAGDLHVGPNPPAVDPERDPAAFKVKKKTKR 465 Query: 393 KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE 444 SK ++ K R + G+RR G G P + Sbjct: 466 GKSKSKKKLEQARRDGKRNGDDYGDVAGRSNRGCGERR---GDGERPSRPKR 514 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 150/400 (37%), Positives = 222/400 (55%), Gaps = 11/400 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ TF +L L +LEA++ G+ P+ IQA AIP L G ++LG+A TGTGKTAA+ LP Sbjct: 122 SLVTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLP 181 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHA 120 L + R+ S +L+LTPTRELA+QVSD ++ A K ++ + + GG Sbjct: 182 LLSRINFNGRETS----MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQL 237 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVVAT GRL+ +IK + AV+ ++LDEAD MLDMGF +D+E I E Sbjct: 238 RALKRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPA 297 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q LFSAT+ D+++ ++ L + E T + I Q Y + EHK L Sbjct: 298 DAQRALFSATMP-DSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKN-EHKIEALA 355 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ E ++FVR ++ E+A L G N L G++ Q R I RL G+++ Sbjct: 356 RVLEGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLD 415 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 ++VATDVAARGID+ +S V N+D+P ++Y+HRIGRT RAGR G AI + + +L Sbjct: 416 IVVATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRML 475 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 + + +PI + P + S+K+ KV + Sbjct: 476 KTIEKATRQPIDVMEM----PTSEQISKKRVDAFKAKVKS 511 >UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Moritella sp. PE36 RepID=A6FEC9_9GAMM Length = 460 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 153/428 (35%), Positives = 236/428 (55%), Gaps = 4/428 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + +D L+ +++ GF + T +Q AAIP L G D++ ++ TG+GKT AY LP LQ Sbjct: 3 FQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L R + R +IL PTRELA+QV + + L I I G ++ + ++ + Sbjct: 63 MLKQRRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLLRK 122 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW-RKQT 184 N ++++AT GRLL +I+E++ +E L+LDEADRMLDMGF D+ I+ ++QT Sbjct: 123 NPEVLIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQT 182 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSATLE + + ++L P + N S + +KI Q + +D+L HK LVHL+K Sbjct: 183 MLFSATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVK 242 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + ++F + LA L + I+ + G+M+Q +R ++ GRV VLVA Sbjct: 243 SEDYRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVA 302 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+DI +SHV NFD+P + + ++HR GRT RAG G AISLV D GK+ Sbjct: 303 TDVAARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGKIQ 362 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGK---PSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 Y++ + +++ K + K K S K + +K K K + + Sbjct: 363 SYLKVKLPCTMLEGFEAKFKGFKPKPAKKRLPVSNKGRPAKLARKGDKNAPKQKQNTAPK 422 Query: 422 DTKNIGKR 429 K G R Sbjct: 423 QDKKQGMR 430 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 132/385 (34%), Positives = 205/385 (53%), Gaps = 8/385 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V TF E + +L ++ +GF RPTAIQ+ P AL GRDV+G A TG+GKT Y LPA Sbjct: 136 VETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 195 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P G P +LIL PTRELA+Q+ + K + + + GGV Sbjct: 196 IVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIR 255 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 S ++ +AT GRL+ ++ + R V L+LDEADRMLDMGF I I + R Sbjct: 256 DLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 315 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLV 240 +QT ++SAT + ++ A L D ++V+ +I Q D E + ++ Sbjct: 316 RQTCMWSATWPKE-VRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374 Query: 241 HL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 HL + + A + ++F + E+ +LR+ G + G+ Q +R+ + G+ Sbjct: 375 HLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 434 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++VATDVA+RGID+ D++HV N+D P + + Y+HRIGRT RAG KGTAI+ + Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 494 Query: 359 LLGKVGRYI---EEPIKARVIDELR 380 + + ++ I R+ + +R Sbjct: 495 QARDLVTILTEAKQQIDPRLAEMVR 519 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 199/371 (53%), Gaps = 5/371 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT F + + + +++ L + F PTAIQA P AL GRD++G A TG+GKT AYLLPA Sbjct: 94 VTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPA 153 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P + G P L+L PTRELA QV A + K + + + GG Sbjct: 154 IVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIR 213 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I +AT GRL+ +++ + R L+LDEADRMLDMGF I I + R Sbjct: 214 DLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 273 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRA--DDLEHKTAL 238 +QTL++SAT + ++ AE L+D V+++ I Q ++ ++K Sbjct: 274 RQTLMWSATWPKE-VRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQ 332 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L+ + + ++I+FV ++R EL +R G + G+ Q +R+ + G+ Sbjct: 333 LMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGK 392 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +L+ATDVA+RG+D+ DV V N+D P S + Y+HRIGRTAR+ KGTA + + Sbjct: 393 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLR 452 Query: 359 LLGKVGRYIEE 369 + R +EE Sbjct: 453 QARDLVRVLEE 463 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 126/393 (32%), Positives = 207/393 (52%), Gaps = 12/393 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPAL-DGRDVLGSAPTGTGKTAAYLLP 61 + TF EL + +L+A+++ G+ P +Q IP L +G DV+ A TGTGKTAA+ LP Sbjct: 1 MKTFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 +Q + K P+ LIL PTREL +Q++ + +K+ L I + GG + + Sbjct: 61 LIQKV----DVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQI 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + I+VAT GRL+ I+ + + +++DEAD ML+MGF I I + Sbjct: 117 RMLKTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPE 176 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + TL+FSAT+ + I A++ L D E++ K ++ Y + K A L Sbjct: 177 DRNTLMFSATMSPE-ISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLV-HAKDKYAALK 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + I+F R R+ E+A+ L + G N L GE+ Q +R+ +++ + + Sbjct: 235 RIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQ 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ D++HV N+ +P ++Y HR GRT RAG+ G +I+++ + + Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKM 354 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 ++ R I + I P + E+Q K Sbjct: 355 REIERIINKKF----IMGEMPSGKQICEQQLIK 383 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 140/396 (35%), Positives = 211/396 (53%), Gaps = 7/396 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E+LL+ L DKG++ P+ IQ AA P + GRD++G A TGTGKTAA+ LP L+ Sbjct: 73 FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMNHAEVFS 124 L P++L+L PTRELAMQV+D + A H HL + + GG + + Sbjct: 133 L----ESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLR 188 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+VV T GR++ ++++ D + +L+LDEAD ML MGF D+E I + +Q Sbjct: 189 RGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQV 248 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ + I+ ++R L DP EV+ ++ K I Q + HK L +L Sbjct: 249 VLFSATMPPE-IRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVP-MSHKLEALQRVLD 306 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + +A L AG L G++ Q +R ++RL G V+VLVA Sbjct: 307 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V N+DMP + Y+HRIGRT RAGR G A+ + + + + Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 R +PI+ + + ++ + S+ Sbjct: 427 RATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANG 462 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 231/417 (55%), Gaps = 18/417 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL + + ++ L+ GF PT IQ +IP AL+G D+LG A TGTGKT A+ +P Sbjct: 1 MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ + LIL PTRELAMQV++ RE +K + + T+ GG+ + Sbjct: 61 IEKVVGQQ-----GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR-WR 181 IVV T GR++ ++ + + TLILDEAD M++MGF D+ I + + Sbjct: 116 LKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ 175 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ AIQ+ ++ ++ P + + +I ++Y +LE K + Sbjct: 176 RQTMLFSATMPK-AIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELE-KFDTFTN 233 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + +IVF R + RV EL + L G L G++ Q KR E +K+ ++++ Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI VSHV+NFD+P+ ++Y HRIGRT RAG++G A++ V + + Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 ++ + R + LRP P K+ K + + R + ++E E PR+++ Sbjct: 354 QIE-----DVNNRRMKALRP----PHRKEVLKAREDDIKDRVQNWMSRENE-PRLQR 400 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 203/359 (56%), Gaps = 7/359 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F L +L+ + + GF P+ IQ AIP L+G+D++ A TGTGKTAAY LP L Sbjct: 17 FQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNR 76 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + K ++L+LTPTRELA+QVSD +L KH + TI GG +Y ++ Sbjct: 77 I-----KVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK 131 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 + VAT GRLL +K + +ILDEAD MLDMGF DIE I ++QTL Sbjct: 132 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 191 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ + I+ A + P V + + K I Q YY D+ E + A+ V +L Sbjct: 192 LFSATMP-EPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAV-VRILDY 249 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++I+F + ++ +L + L G L G++ Q +R + +K L +GRV +LVAT Sbjct: 250 ENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVAT 309 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 DVAARG+D+ D+S V N+ +P ++Y HRIGRT RAG+ G A++LV + L ++ Sbjct: 310 DVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 368 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 165/423 (39%), Positives = 235/423 (55%), Gaps = 7/423 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M++ TF++L L +LL AL ++G+ PT IQA +IP L+GRD+LG A TGTGKTAA+ L Sbjct: 1 MSM-TFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFAL 59 Query: 61 PALQHLLDFPRKKS-GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P L L PR G R+L+L PTREL Q++D +H + TI GGV+ ++ Sbjct: 60 PLLHRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQ 119 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DI+VA GRLL I + D +E L+LDEAD+MLDMGFA+ IE I Sbjct: 120 VNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLP 179 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 + T+LFSAT+ +I AE LL DP +V P + +I Q D + A L Sbjct: 180 KDRHTVLFSATMPK-SIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADK-KAAL 237 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + +L+ P +++VF ++ +E+ ++ EAGI L G QG+R A+ G Sbjct: 238 LAMLRTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTA 297 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ V+HVFN D+P ++Y+HRIGRT RAGR G AI+L +A Sbjct: 298 QVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAW 357 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L V R I + ++ + P + T +P A E K K++E+ + Sbjct: 358 LRDVEREIGRAL---IVQDDHPWHSEAARNSTMRPPVLGGAPAKEVKPQKKRERKVWTEE 414 Query: 420 HRD 422 ++ Sbjct: 415 EKN 417 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 143/396 (36%), Positives = 215/396 (54%), Gaps = 13/396 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF++L++ +L A+ D G+ PTAIQAA IP + G DV+G A TGTGKTAA+ +P Sbjct: 11 SAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIP 70 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L + + P+ L+L PTRELA+QV++ + L++ I GG +Y Sbjct: 71 MLSKIDITSK----VPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQL 126 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +VV T GR++ +++ D V+ L+LDEAD ML MGFA D+E I ET Sbjct: 127 AGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPE 186 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ LFSAT+ AI+ + + L DP EV+ T + I Q Y + K L Sbjct: 187 YKQVALFSATMP-PAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV---ARKMDALT 242 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ IVFVR ++ E+A LR G + + G++ Q +R I L +G ++ Sbjct: 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G A+ V + LL Sbjct: 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 + + + + + P + ++ K + Sbjct: 363 KAIEKATRQTL----TEAQLPTVEDVNTQRVAKFAD 394 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 535 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 207/376 (55%), Gaps = 7/376 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPAL-DGRDVLGSAPTGTGKTAAYLLP 61 + F+ L L+ + + L+ KGF P+ IQ AIP L D++G A TGTGKTAA+ LP Sbjct: 1 MDKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 +Q + P+ LIL PTRELA+QV++ + K + T+ GG M+ Sbjct: 61 IVQKI----EPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKR 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+VVAT GR + +I++ + ++E L+LDEAD ML+MGF +D+E + + Sbjct: 117 ALKKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDD 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 + L+FSAT+ ++ AE + + + + A T + I Q Y A E+K A L Sbjct: 177 RTVLMFSATMP-PRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYP-ENKFAALCR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + I+F R + V +++ L G Y+ G++ Q R +KR +++ Sbjct: 235 IMDLEKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISL 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARGID+ D+SH+ NF +P ++Y+HRIGRT RAG+ GTAI+L+ + + Sbjct: 295 LIATDVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMS 354 Query: 362 KVGRYIEEPIKARVID 377 + + + R + Sbjct: 355 FIEKKTGAKTERRKLP 370 >UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Proteobacteria RepID=C6E4K1_GEOSM Length = 490 Score = 535 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 152/443 (34%), Positives = 234/443 (52%), Gaps = 24/443 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+EL++ + + + + GFT+ T IQ A+P AL G+DV G A TGTGKTA +L+ Sbjct: 3 FTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIFTK 62 Query: 66 LLDFPRKKS-GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 LL + PR LIL PTREL +Q+ A+ L K+T +I I GGV YM + Sbjct: 63 LLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDALK 122 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW--RK 182 DIV+ T GRL+ Y+K++ + + VE L++DEADRM DMGF D+ I ++ Sbjct: 123 AGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYDKR 182 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSATL + + A + P +VS P +++ Q Y E K LL+ L Sbjct: 183 QNLLFSATLNT-RVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKE-KFPLLLGL 240 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L++ R+++FV + L + L + G++ Q KR + + +G + ++ Sbjct: 241 LRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPIM 300 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVA+RGI I VSHV N+D+P+ + Y+HRIGRTARAG +G AIS + + Sbjct: 301 IATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIEP 360 Query: 363 VGRYIEEPIKARVIDE-----------LRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 + +I++ I ++ RP+T P + GKP + + +K + +K Sbjct: 361 IEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELP-HGRGGKPGDR--GRSGDKGRPGDK 417 Query: 412 EKPRVKKRHRDTKNIGKRRKPSG 434 +P + R + KP+G Sbjct: 418 GRPAGRSRSASGSD-----KPAG 435 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 181/366 (49%), Gaps = 4/366 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF L +L L GF PT IQA P AL RD++ A TG+GKT YL+PA Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L P +LIL PTRELA Q+ D A + + + + GG + Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DIVVAT GRL ++ + D + V L+LDEADRMLDMGF I I E R+QT Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHL 242 L+++AT + ++ A LL +PV+V+ K I Q+ +E + L L Sbjct: 616 LMYTATWPKE-VRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQIL 674 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 Q ++ I+F + LA + + G+ QG+R+ + + G+ VL Sbjct: 675 RSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVL 733 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+DI D+ V N+D P + Y+HRIGRT RAG G A + D Sbjct: 734 IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPD 793 Query: 363 VGRYIE 368 + + +E Sbjct: 794 LIKVLE 799 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 534 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 129/389 (33%), Positives = 209/389 (53%), Gaps = 10/389 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 ++++ + ++ + F +P+ IQ+ A P L G D++G A TG+GKT ++LLP++ Sbjct: 102 SWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIV 161 Query: 65 HLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H+ P K G P +L+L PTRELAMQ+ + K + L A I GG + + Sbjct: 162 HINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALL 221 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+V+AT GRL+ +++ E R V L+LDEADRMLDMGF I I G+ R +Q Sbjct: 222 QQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQ 281 Query: 184 TLLFSATLEGDAIQDFAERLLED-PVEVSANPSTRE-RKKIHQWYYRADDLEHKTALLVH 241 TL+FSAT + +Q+ A+ ++ PV V ++I Q Y D + L+ Sbjct: 282 TLMFSATWPKN-VQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQ 340 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + + ++F + ++ ++ L + G + G+ Q R+ + + G + Sbjct: 341 LDCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRI 400 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHLLL 360 L+ATDVA+RG+D+ DVSHVFN+D P+ + Y+HRIGRT RAG G A+S + D + Sbjct: 401 LIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKIS 460 Query: 361 GKVGRYI-----EEPIKARVIDELRPKTR 384 + + + E PI + + P+ R Sbjct: 461 REYVQMLHDAKQEIPIDLLDLASINPRYR 489 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 534 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 172/440 (39%), Positives = 247/440 (56%), Gaps = 7/440 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F LD+ +L+ ++ GFT+ T +Q IP AL +D++ A TG+GKTAA+++P LQH Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 LL SG R LIL PTRELA Q+ + LAK T + ITGG + A +F + Sbjct: 62 LLTHKAPNSG-TRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRK 120 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET--RWRKQ 183 N +I++AT GRL+ ++K++ VE ILDEADRMLDMGF +D+ IA + + Q Sbjct: 121 NPEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKPQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSATL+ ++ +++ DP E+ + E I Q Y ADD +HK +L LL Sbjct: 181 TLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 E ++I+F +E+ + ++L + YL G+M Q +RN + ++ GR VLV Sbjct: 241 SNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI + V NFDM RSGD Y+HRIGRT RA G+AISL++ + L + Sbjct: 301 ATDVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSE-KQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 RY+ + + + + + P + K GK + K K + K + K R K RD Sbjct: 361 ERYLRVNMNHKYVKAIAGNYKGPKKVKGNGKAASKGKPKNKKDGKKGPQSKARPTKGKRD 420 Query: 423 TKNIGK---RRKPSGTGVPP 439 N K +R G G P Sbjct: 421 NSNKKKPTSKRTIWGDGTAP 440 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 534 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 145/376 (38%), Positives = 198/376 (52%), Gaps = 6/376 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F D +++ ++ G+ PT IQA AIPP + G DV+G A TGTGKTAAY LP + Sbjct: 1 MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q +L PR G R L++ PTRELA Q+SD R L + + +I GGV Sbjct: 61 QKMLSTPR---GRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+VVA GRLL +I D VETLI+DEADRM DMGF DI+ I Q Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + ++ +PV V + KT LL+ +L Sbjct: 178 TLLFSATMPPE-VRKLTLETQTNPVTVQVGTQSPVSSV--SHSVYPVKSHQKTPLLLEIL 234 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K E ++F R + LA+ + +AG L+G + Q +R+ ++ G +LV Sbjct: 235 KTVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILV 294 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARG+DI +SHV N+DMP S + Y HRIGRT R R G A SLV D ++ + Sbjct: 295 ATDIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDI 354 Query: 364 GRYIEEPIKARVIDEL 379 R + PI+ +D Sbjct: 355 QRLLSSPIQRLRVDGF 370 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 182/369 (49%), Gaps = 6/369 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F +L+ +Q GF+ PT IQA + P AL +DV+ A TG+GKT YLLP Sbjct: 149 ITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPG 208 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 H+ P +L+L PTRELA Q+ + A + + + + + GG Sbjct: 209 FMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRD 268 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+VVAT GRL ++ + V L+LDEADRMLDMGF I I E R+ Sbjct: 269 LDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRR 328 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLV 240 QTL+++AT + ++ AE LL PV+V+ I Q E K L Sbjct: 329 QTLMYTATWPKE-VRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSE-KLRRLE 386 Query: 241 HLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L+ ++ + ++F + +LA L + G+ Q +R + + GR Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRS 445 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVAARG+DI D+ V N+D P + Y+HRIGRT RAG G A + D Sbjct: 446 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 505 Query: 360 LGKVGRYIE 368 + + +E Sbjct: 506 AADLIKILE 514 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 215/396 (54%), Gaps = 11/396 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L LL+ L G+ PT IQ+ AI LDG DVLG A TGTGKTAA+ LP L Sbjct: 6 TFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLS 65 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF 123 + K P+ L+L PTRELA+QV++ + A+ + + I GG N Sbjct: 66 RIDTTKNK----PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRAL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +N ++V T GR++ +++ D ++ L+LDEAD ML MGF +DI+ I T KQ Sbjct: 122 KQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSAT+ I+ ++ +DPV++ S E ++I Q +RA L+ K L +L Sbjct: 182 TALFSATMPHQ-IKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLD-KLDGLTRIL 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + I+FVR R L+ L G L GE+ Q +R + + + +G++++++ Sbjct: 240 EIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIII 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI ++HV N+D+P TY HRIGRT RAGR G AI + + ++ + Sbjct: 300 ATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL 399 R K+ +ID P E + V+ Sbjct: 360 ERAT----KSELIDYPMPSAEKLGEHRAAAFKSTVV 391 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 150/376 (39%), Positives = 212/376 (56%), Gaps = 7/376 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF +L L + +L +++D GFT P+ IQAAAIP L GRD++G A TGTGKTAA+ LPA Sbjct: 13 LITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPA 72 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L ++ IL++TPTRELA QVSD + ++ T+ GG +Y ++ Sbjct: 73 LNNINPN-----DGVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDL 127 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VVAT GRLL +K+ A ++LDEAD MLDMGF DI I + Sbjct: 128 IQRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNR 187 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ I+ AER+L++P +S I+Q YY ++ E + ++ L Sbjct: 188 QTLLFSATMPKP-IKLLAERILDNPEFISITKGETTNTDINQEYYVIEESE-RDDAIIRL 245 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + +SIVF R + V L+N L AG L G+M Q +R IK V VL Sbjct: 246 MDAEACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVL 305 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGI + ++SHVFN+ +P ++Y+HRIGRT RAG KG AI+L+ + L + Sbjct: 306 VATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQR 365 Query: 363 VGRYIEEPIKARVIDE 378 + + + + Sbjct: 366 IKTKVGTTMTHAFVPS 381 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 146/448 (32%), Positives = 227/448 (50%), Gaps = 26/448 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F L+++ESL +L FT+PT IQ AIP AL+G+D+LG+A TGTGKT A+ +P Sbjct: 1 MENFKLLKIEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHAREL-AKHTHLDIATITGGVAYMNHAE 121 + L+ L++ PTRELA QV + + + + ++ A + GG + Sbjct: 61 INKLILDKNAF-----ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLR 115 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 I+V T GR+ ++K ++ + A + L+LDE DRMLDMGF IE + Sbjct: 116 QLGNRSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKD 175 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 QTLLFSATL + I +ER L P +S ++ KI Q + L+ Sbjct: 176 HQTLLFSATLPQN-ILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELIDQ 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + +VFV+ + ++ L+E G + + G++ Q KR+ I +G + Sbjct: 235 FLAR--KGSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRI 292 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARG+DIP + HV N+D+P+ + Y+HRIGRTARAG +G+A++ + D + Sbjct: 293 LIATDVAARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWN 352 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I+ P +A K K KK K +E+ R + R Sbjct: 353 SINKLID------------PNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGR 400 Query: 422 DTKNIGKRRKP-----SGTGVPPQTTEE 444 ++ R KP S +G PP+ E+ Sbjct: 401 QDRSSSFRNKPKSYDKSRSGKPPRDGEK 428 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 147/398 (36%), Positives = 223/398 (56%), Gaps = 11/398 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FSEL L + +L AL D G+ +P+ IQ IP L G DVLG A TG+GKTAA+ LP L Sbjct: 7 SFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLN 66 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 ++ K P+I+ILTPTRELA+Q+ L+K+ ++I + GG Y + Sbjct: 67 NI----DLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSL 122 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 N IVV T GR+L + ++ + + + +LDEAD ML MGF +D+E+I ++ + Q Sbjct: 123 KRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ AI +R ++ P E+ S R I Q Y+ L K L+ L Sbjct: 183 TILFSATMPA-AIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLC-KIEALLRFL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + I+FVR + E+++ L + G N+ L G+M Q R + + R G +++LV Sbjct: 241 EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + +L + Sbjct: 301 ATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 R I+E + + P +K+ S+K+ + Sbjct: 361 ERNIKEKLSQIKL----PSVELLCKKRLNNFSEKIKNQ 394 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 190/366 (51%), Gaps = 3/366 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E + ++A+ GF PT IQ+ P AL GRD++G A TG+GKT +YLLP L H Sbjct: 253 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVH 312 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + PR + G P +LIL PTRELA+Q+ + + ++ I GG Sbjct: 313 VGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLR 372 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +IV+AT GRL+ ++ + + R V L+LDEADRMLDMGF I I + R +QT Sbjct: 373 RGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQT 432 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L +SAT + ++ A + L++P +V P + I Q + E L L Sbjct: 433 LYWSATWPRE-VESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLS 491 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +R ++F + ++ ++ LR G + G+ Q +R+ + G+ ++ Sbjct: 492 DLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMA 551 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ D+ V NFD P + + Y+HRIGRT RAG GTA + + + Sbjct: 552 ATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNL 611 Query: 364 GRYIEE 369 + + E Sbjct: 612 VKILRE 617 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 136/385 (35%), Positives = 206/385 (53%), Gaps = 19/385 (4%) Query: 3 VTTFSEL-ELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F EL + E LL+ ++ + RPT +Q +IP L+GRD++ A TG+GKTAA+L P Sbjct: 199 MQSFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFP 258 Query: 62 ALQHLLDFPR-----------KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATI 110 + +L+ K+ P L+L+PTRELA+Q + +R+ T + + Sbjct: 259 IVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVL 318 Query: 111 TGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 GG + DI+VAT GRL I + + ++ LILDEADRMLDMGFA Sbjct: 319 YGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQ 378 Query: 171 IEHIA--GETRWR---KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 I I E +QT++FSAT + IQ A+ L + + ++ I Q Sbjct: 379 IREIVEDSEMPHSLDGRQTVMFSATFPRE-IQQLAKDFLHNYIFLTVGRVGATSGSIVQR 437 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 A++ +HK LLV LL + ++VFV + R ++ ++L + + G+ Q Sbjct: 438 VVYAEE-DHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQ 496 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 +R A++ G+ +LVATDVAARG+DIP+++HV N DMP + D Y+HRIGRT RAG Sbjct: 497 EREHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNT 556 Query: 346 GTAISLVEAHDHLLLGKVGRYIEEP 370 G A S V + +L + +EE Sbjct: 557 GLATSFVNESNKPILRDLLAALEES 581 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 134/404 (33%), Positives = 213/404 (52%), Gaps = 7/404 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPALQ 64 F +L + ES++E L +KGFT T IQ AIP LD DV+G A TGTGKT A+ +P +Q Sbjct: 3 FRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQ 62 Query: 65 HLLD----FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + + RK + +ILTPTRELA+QV D + K L + T+ GG + Sbjct: 63 KIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQI 122 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 DIV+ T GR++ ++ ++ L+LDEAD ML++GF D+E I + + Sbjct: 123 NKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCKE 182 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + LLFSATL +I + E + + + + Q YY + + K LL Sbjct: 183 DCRKLLFSATLPK-SIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHD-KFELLR 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + +VF + + V +L L + ++ L G+M Q +R A+ R +++ Sbjct: 241 RIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKID 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +++ATDVAARGIDI +++HV N+D+P++ + Y+HRIGRT RAG KGTAI+ VE + Sbjct: 301 IMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRF 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + + + K I ++ GK + + + +E Sbjct: 361 KYIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSE 404 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 139/411 (33%), Positives = 224/411 (54%), Gaps = 17/411 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL + ++ +++L+ GF PT IQ +IP AL G D+LG A TGTGKT A+ +P Sbjct: 12 LQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 71 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ + LIL PTRELAMQV++ RE ++ + + T+ GG+ + Sbjct: 72 IEKVVGKQ-----GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 126 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW-R 181 + IVV T GR++ ++ + TLILDEAD M++MGF D+ I + + Sbjct: 127 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 186 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ AIQ ++ ++ P + + +I ++Y +LE K + Sbjct: 187 RQTMLFSATMPK-AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTN 244 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + +IVF R + RV EL + L G L G++ Q KR E +K+ ++N+ Sbjct: 245 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 304 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI VSHV+NFD+P+ ++Y HRIGRT RAG++G A++ V + + Sbjct: 305 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 364 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++ + A R P K+ + + + ++ E +K+ E Sbjct: 365 QIEDANGRKMSA---------LRPPHRKEVLQAREDDIKEKVENWMSKKSE 406 >UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI Length = 839 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 147/405 (36%), Positives = 222/405 (54%), Gaps = 6/405 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT+F D+ L++A++ +T+PT+IQA A+P AL GRD++G A TG+GKTAA++ P Sbjct: 300 VTSFGHFGFDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPL 359 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL+D K+G P LIL PTREL++Q+ + A+ K +L + GG + ++ Sbjct: 360 LMHLMDQRELKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSK 419 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + +I+VAT GR++ +K + + R V L+LDEADRM MGF + I R Sbjct: 420 ALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPD 479 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK-TALLV 240 +QTLLFSAT I+ A +L DP+ + + + Q Y + + K LL Sbjct: 480 RQTLLFSATF-KRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLC 538 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+K ++FV K+ +A+ L N L G+M Q RN+ I + + Sbjct: 539 HLVKFLAEGSCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECD 598 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +L+ATDVAARG+DIP + +V N+D+ R DT+ HRIGRT RAG KG A +LV D Sbjct: 599 ILIATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFA 658 Query: 361 GKVGRYIE---EPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 G + R +E +P+ + +++ + S + KKV Sbjct: 659 GHLVRNLEGADQPVPSDLLELAMKSSWFRSSRFKQGKGKKVTPTH 703 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 130/383 (33%), Positives = 193/383 (50%), Gaps = 8/383 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F L++AL GFT PTAIQ P AL G D++G A TG+GKT +LLPA Sbjct: 167 ITSFVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPA 226 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H+ P + G P L+L PTREL Q+ + A + L I GGV Sbjct: 227 MIHIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQA 286 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +I +A GRL+ ++E + V L+LDEADRMLDMGF I + + R Sbjct: 287 SIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPD 346 Query: 182 KQTLLFSATLEGDAIQDFAERLLED-PVEVSANPST--RERKKIHQWYYRADDLEHKTAL 238 +QTLL+SAT + +Q A L ++ P+ ++ + I Q+ ++ E K L Sbjct: 347 RQTLLWSATWPKE-VQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKL 405 Query: 239 LVHL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 + L + A + ++F + L LR G + G+ Q +R + Sbjct: 406 KMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRT 465 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G +++ATDVAARG+DI D++ V NFD P + Y+HRIGRT RAG G ++S Sbjct: 466 GASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDK 525 Query: 357 HLLLGKVGRYIEEPIKARVIDEL 379 + + + + ++E K RV EL Sbjct: 526 YRMASDLIKVLKEA-KQRVPPEL 547 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 136/385 (35%), Positives = 203/385 (52%), Gaps = 9/385 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FSE ++ + AL D GF T IQA +P LDG DV+G A TGTGKTAA+ + Sbjct: 1 MKGLEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L++L + P+ LI+ PTREL +QVS+ + + K+ + + + GG + N Sbjct: 61 PVLENL-----EAERVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++VAT GRL+ +I+ D + T++LDEAD ML+MGF DIE I Sbjct: 116 AQLRRGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPE 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 R+QT+LFSAT+ I A + + +P + KI ++Y++ + E K LL Sbjct: 176 RRQTMLFSATVSKP-ILRIARKYMRNPQVMRVEKKHS--PKIDEFYFKTRE-EDKVELLD 231 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L ++F + RV L L G + + G++ Q KR ++R G + Sbjct: 232 WILSSNNIRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFS 291 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGI +PDV V N+D+P + Y+HRIGRT RAG G + +LV + L Sbjct: 292 LLVATDVAARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRL 351 Query: 361 GKVGRYIEEPIKARVIDELRPKTRA 385 ++ + + IK + R Sbjct: 352 RRIQSFTGKRIKQSNMPSPEEIRRG 376 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 142/370 (38%), Positives = 200/370 (54%), Gaps = 6/370 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V +F+EL + + +L + G+ PT IQ+ P AL GRDV+G A TG+GKTA++LLPA Sbjct: 91 VLSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPA 150 Query: 63 LQHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H++ PR ++ P LIL PTRELA QV A+E A L GG A Sbjct: 151 VIHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLR 210 Query: 122 VFSENQDIVVATTGRLLQYIK-EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +I +AT GRL+ +I+ + N V L+LDEADRMLDMGF I I G TR Sbjct: 211 EMQKGGEICIATPGRLIDFIRVQRNL-LSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRP 269 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALL 239 +QTL++SAT + +Q A L D ++V+ + I Q DD K L Sbjct: 270 DRQTLMWSATWPRE-VQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWS-KEQRL 327 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + LL R++VFV + R +L N LR G + G Q R + GR+ Sbjct: 328 IELLTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRM 387 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 N+LVATDVA+RG+DI ++ +V NFD P + Y+HRIGRTAR+ + GTA + + Sbjct: 388 NILVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQ 447 Query: 360 LGKVGRYIEE 369 + ++E Sbjct: 448 ARDLIDILDE 457 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 127/405 (31%), Positives = 202/405 (49%), Gaps = 17/405 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F+++EL + + E + + PT +Q A+P RD++ A TG+GKTAA+LLP Sbjct: 158 IKSFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLPI 217 Query: 63 LQHLLDFPRKKSGP---------PRILILTPTRELAMQVSDHARELAKHTHLDIATITGG 113 L L + ++ P LIL PTREL+ Q+ D AR+ + +++ + GG Sbjct: 218 LNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGG 277 Query: 114 VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEH 173 + + S +++VAT GRL+ + + +LDEADRMLDMGF I Sbjct: 278 ASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRR 337 Query: 174 IAGE--TRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA 229 I + ++QTL+FSAT + IQ A L + ++ + I Q Sbjct: 338 IVEQHGMPPAGKRQTLMFSATFPKE-IQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNV 396 Query: 230 DDLEHKTALLVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRN 288 D + K +LV LL+ + ++VFV + LA +L + + G+ Q +R Sbjct: 397 ADKD-KPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTERE 455 Query: 289 EAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA 348 A++ GR +L+AT VAARG+DIP+V HV NFD+P + Y+HRIGRT R G+ G+A Sbjct: 456 HALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSA 515 Query: 349 ISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 S + ++ + + E K V L + PS + + Sbjct: 516 TSFFSEKNQNVVRDLVELLRES-KQAVPPWLEARVAYPSGPASRR 559 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 136/406 (33%), Positives = 222/406 (54%), Gaps = 14/406 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRD-VLGSAPTGTGKTAAYLLP 61 +T F ++ L +++L A+ KG+ PT IQ IP L G++ V+G A TGTGKTAA+ +P Sbjct: 1 MTKFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++ L +K+ + L+LTPTRELA+QV + L + L++ + GGV+ N Sbjct: 61 LIERL----DEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIR 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D+VV T GR++ ++ D ++ L++DEAD MLDMGF +D+E I +T Sbjct: 117 ALKRRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKE 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSA---NPSTRERKKIHQWYYRADDLEHKTAL 238 KQ L+FSAT+ + A + + + V+ N KK Q YY + +K L Sbjct: 177 KQILMFSATMPQRIV-TLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISE-SNKIEL 234 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L L+ +VF + + + E+AN L + G L G++ Q +R + R R Sbjct: 235 LSRLIDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKR 294 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + +L++TDVAARGIDI ++ +V N+ +P++ + Y+HRIGRTARAG +GTAI+ V ++ Sbjct: 295 IKILISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYR 354 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 +I+ KA + + P+ + + K ++ + A+ Sbjct: 355 RFM----FIKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAK 396 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 148/418 (35%), Positives = 221/418 (52%), Gaps = 14/418 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T FS+L L++ +++ + G+ PT IQ AIP L GRDVLG A TGTGKTAA+ LP Sbjct: 5 TKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 + ++ R ++ P++L+L PTRELA+QV++ + AK+ +LD+A I GG Y + Sbjct: 65 LINNMDLESRDRA--PQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +VV TTGR++ +I++ + L+LDEAD ML MGF D+ ++ Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD 182 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q LLFSAT+ D I D + L +P ++ T+ + Q + K L Sbjct: 183 ECQRLLFSATIPTD-IADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGF-RKIDALD 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL+ E I+FV+ + E+A+ L+ G + G+M Q +R + + + + Sbjct: 241 RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSD 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDV ARGID+ +SHV N+DMP DTY+HRIGRT RAGR+G +ISLV + L Sbjct: 301 VLVATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 + R+ P++ + PS K + R K K K+ Sbjct: 361 RTLERFTGSPMQEVFM---------PSAKDLAQSRIDHFKTRIASALDKNKSLDNYKE 409 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 142/407 (34%), Positives = 223/407 (54%), Gaps = 9/407 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ T F ++ L L++A+ D +T+ T IQA AIP + G DV+G + TGTGKTAA+ + Sbjct: 1 MSETKFEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 PA++ + P++L+L+PTRELAMQ++D R+ AK+ + +A + GG Sbjct: 61 PAVERI----ESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +IV+ T GR++ +++ + T++LDEAD ML+MGF DI+ I ET Sbjct: 117 IRALRA-ANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT+ AI ++ L DP V R + Q++YR K L Sbjct: 176 DTRQTVLFSATMP-PAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQA-RKMDAL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL+ + R++VF + V L +L + G + G+M Q R + ++ +G+ Sbjct: 234 NLLLQYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKT 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHL 358 +LVATDVAARGID+ ++ VFNFD+P+ + Y+HRIGRT RAGR G + +LV A Sbjct: 294 RILVATDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVD 353 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 + ++ R+I I+ + R EK + ++ + A K Sbjct: 354 TIRQLRRFINADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGK 400 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 7/379 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M TTFSELE++ + L + GFT PT IQ AIP G DV+G + TGTGKT A+ + Sbjct: 1 MNKTTFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 PA++ + ++ ++LI+ PTRELA Q ++L K+ + + I GGV+ Sbjct: 61 PAIEKI--DIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQ 118 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + IV+ T GR+ ++K + ++ ++LDEAD ML MGF +DI+ I Sbjct: 119 ISKLKK-AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAP 177 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT+ AI + + L++P+ + + KI Q Y + K +L Sbjct: 178 DTRQTVLFSATMP-PAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKK-EVL 235 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL + +I+F + V +L +LR+ G + L G++ Q +R+ + + Sbjct: 236 NLLLHYYGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKT 295 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHL 358 +LVATDVAARGID+ DV +V N+D+P++ + Y+HRIGRTAR G+ GT+I++ Sbjct: 296 PILVATDVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVT 355 Query: 359 LLGKVGRYIEEPIKARVID 377 L + + IK I Sbjct: 356 DLKMILKETNSKIKKLDIP 374 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 529 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 7/373 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L + ++ AL+ GFT T IQ AIP + G D++G A TGTGKT A+ +P ++ Sbjct: 5 FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVEK 64 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 + LILTPTREL QV +L K L + TI GG +Y + Sbjct: 65 ----TDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELD 120 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 I+VAT GR++ +I D + TL LDEAD ML MGF DIE I T +QT Sbjct: 121 RKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQT 180 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I+ A+ ++P + + +I Q Y+ + E K +LL LL Sbjct: 181 VLFSATMPA-FIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKE-KQSLLERLLD 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +I+FV + + L++AG L G++ Q +R + R ++++LVA Sbjct: 239 FENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVA 298 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ DV + N+D+P+ + Y+HRIGRT RAG+KG A + V +L + Sbjct: 299 TDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLA 358 Query: 365 RYIEEPIKARVID 377 Y + IK + Sbjct: 359 HYTKADIKRLEVP 371 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 529 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 150/417 (35%), Positives = 229/417 (54%), Gaps = 9/417 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L E + +A+++ G+T+PT +Q IP L+G+DV+ +A TGTGKTAAY LP L Sbjct: 3 FEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLHI 62 Query: 66 LLDFPRKK--SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L +K S R LIL PTRELA QV + K+ L A I GGV + A+ Sbjct: 63 LNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAKKL 122 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + DI++AT GRLL+++K N D VE ++ DEADR+LDMGF +++ + G ++Q Sbjct: 123 DKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKRQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFS L +++ +E L+ PV V+ N KK+ Q Y D E K LL ++ Sbjct: 183 TLLFSVGL-SKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDK-ERKCELLSFMI 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +VF + ++ E+ +L +G+ L G+ KR +AI E + VLV Sbjct: 241 GTHNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+A+RG+DI D+ +V N+++P + Y HR GRT RAG++G AISLV + ++ Sbjct: 301 ATDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + ++ IK K E + K + + +++KA ++ KKR Sbjct: 361 EKILKYTIKTEFYPGFETK-----EWVEKEAKKHTIQAKIDREKANKRPNGLRKKRE 412 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 132/394 (33%), Positives = 210/394 (53%), Gaps = 8/394 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M + F +L + E +ALQ+ F T IQA IP + G DV+G A TGTGKT A+ + Sbjct: 1 MNIL-FEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 P ++ + K + LIL PTREL +QV + ++L ++ + IA + GG +Y Sbjct: 60 PIIEKIDY----KLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQ 115 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +++AT GR++ +I+ D A++ L LDEAD ML MGF + +E I + Sbjct: 116 FRALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSATL +I+ A + ++ + I Q+Y+ + + K LL Sbjct: 176 EERQTVLFSATLP-PSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFD-KNKLL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 V LL +I+F ++ V E+ ++L++ G + G++ Q +R + +G++ Sbjct: 234 VRLLDLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKI 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +L+ATDVAARGIDI D+ V N+D+P + Y+HRIGRT RAG+KG A S + Sbjct: 294 KILIATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQ 353 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 L K+ Y++E +K I + + E K Sbjct: 354 LKKLEYYLKEKVKFLEIPSVEEIKKQILENFEQK 387 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 134/383 (34%), Positives = 193/383 (50%), Gaps = 17/383 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V TF+E++L E+L +Q + +PT +Q AIP GRD++ A TG+GKTAA+ P Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204 Query: 63 L------QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 + QH+ + P +IL+PTRELA Q+ D AR+ + T + + GG Sbjct: 205 ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 DI+VAT GRL ++ + V L LDEADRMLDMGF I I Sbjct: 265 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQ 324 Query: 177 ET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDL 232 + +QT+LFSAT + IQ A L + + ++ I Q D Sbjct: 325 QMDMPPPGVRQTMLFSATFPRE-IQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDS 383 Query: 233 EHKTALLVHLLKQPEATR------SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 286 + ++ L+ L Q E ++VFV ++ L NWL G + G+ Q + Sbjct: 384 DKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQE 443 Query: 287 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 346 R A++ GR +LVATDVAARG+DIP V+HV NFD+P D Y+HRIGRT RAG G Sbjct: 444 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503 Query: 347 TAISLVEAHDHLLLGKVGRYIEE 369 A + ++ + + ++E Sbjct: 504 LATAFFNDNNTTMAKPLAELMQE 526 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 7/380 (1%) Query: 7 SELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHL 66 +EL L LL+A+ GF + IQAA IP L G DV+G + TG+GKTAA+ LPA++ + Sbjct: 1 AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERV 60 Query: 67 LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFSE 125 K ++LIL PTRELA+QV++ +LA + I GG +Y + Sbjct: 61 ----DTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAA 116 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +V+ T GR++ +++ + +ILDE DRMLDMGF DIEHI ++Q+L Sbjct: 117 GAQVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSL 176 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ + I+D R + +P V + ++ Q Y+ D K +L L+ Sbjct: 177 FFSATMPRE-IRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDR-RSKLEVLTRLIDL 234 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + I+F + V EL L G L G++ Q +R +++ L+AT Sbjct: 235 NDFRYGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIAT 294 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ D+ VFNFD+P + Y HRIGRT RAGRKG A + V + L + R Sbjct: 295 DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVR 354 Query: 366 YIEEPIKARVIDELRPKTRA 385 + I+ + L A Sbjct: 355 FARLDIRRERVPSLDQVEEA 374 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 212/381 (55%), Gaps = 7/381 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M + +FS+L+L +++A++D G+ PT IQ IP L G DV G A TGTGKTAA+ + Sbjct: 1 MEIPSFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 PA++ L P ++ + ++L P+RELA+QV +LA H + I + GG Sbjct: 61 PAIE--LCQPANRN--VQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + S I++ T GR++ +IK + AV ++LDEAD+MLDMGF +DIE I Sbjct: 117 IKALSRGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT++ SAT + I D + R ++P++V +I Q+Y + K L Sbjct: 177 KERQTVILSATFPPE-ILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPA-KADTL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + +L+ + R+I+F + V +++ L+ G L G M Q +R++ + +G++ Sbjct: 235 IRVLEFYQPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQL 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +L+ATDVAARGID+ ++ V NFD P+ + Y+HRIGRTARAGR G AIS V + Sbjct: 295 EILIATDVAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYR 354 Query: 360 LGKVGRYIEEPIKARVIDELR 380 L V R + I LR Sbjct: 355 LRDVRRSTRAEPEPLPIPTLR 375 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 117/383 (30%), Positives = 192/383 (50%), Gaps = 19/383 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +FS++E+ E ++ ++ +TRPT +Q AIP + RD++ A TG+GKTAA+LLP Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238 Query: 63 LQHLLDFPR--------------KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIA 108 L + ++ P L+L PTRELA+Q+ + AR+ + + + Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298 Query: 109 TITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFA 168 + GG ++VAT GRL+ ++ + L+LDEADRMLDMGF Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358 Query: 169 QDIEHIAGE--TRWR--KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ 224 I I + + + T++FSAT + IQ A L++ + ++ + I Q Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKE-IQMLARDFLDEYIFLAVGRVGSTSENITQ 417 Query: 225 WYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 284 ++ + ++ LL L + + ++VFV ++ L ++L G + G+ Q Sbjct: 418 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 477 Query: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344 R EA+ + G+ +LVAT VAARG+DI +V HV NFD+P + Y+HRIGRT R G Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 537 Query: 345 KGTAISLVEAHDHLLLGKVGRYI 367 G A S + + + + Sbjct: 538 LGLATSFFNERNINITKDLLDLL 560 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 134/369 (36%), Positives = 185/369 (50%), Gaps = 7/369 (1%) Query: 15 LLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS 74 LL + GF+ PT IQA + P AL RD++ A TG+GKT YL+P HL Sbjct: 33 LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92 Query: 75 GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134 P +L+L+PTRELA Q+ D A + + + L + GG DIVVAT Sbjct: 93 MGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATP 152 Query: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGD 194 GRL ++ R V L+LDEADRMLDMGF I I E R+QTL+++AT + Sbjct: 153 GRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKE 212 Query: 195 AIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHLLKQPEAT-RS 251 ++ A LL +PV+V+ K I Q Y K L +L+ E + Sbjct: 213 -VRKIAADLLVNPVQVNIGNVDELVANKAITQ-YVEVLPYMEKHKRLEQILRSQEPGSKI 270 Query: 252 IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 311 I+F ++ +LA L + G+ QG+R+ + + GR VLVATDVAARG Sbjct: 271 IIFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARG 329 Query: 312 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 +DI D+ V N+D P + Y+HRIGRT RAG G A + D + + +E Sbjct: 330 LDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGA- 388 Query: 372 KARVIDELR 380 RV E+R Sbjct: 389 NQRVPPEIR 397 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 137/410 (33%), Positives = 205/410 (50%), Gaps = 9/410 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLPA 62 +F L L E+ L A++ KGF++PT IQ IP L G D++G + TGTGKTAA+ LP Sbjct: 1 MSFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + +K + +IL PTRELA+QV+D + L + + + GG Sbjct: 61 IEAI----DEKEKSVQAIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR+L +I+ D V+ ILDEADRMLDMGF DIE I ET +K Sbjct: 117 LERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKK 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 + L+FSAT+ + I A R + D + + + Q Y K + L + Sbjct: 177 RVLMFSATMPRE-ILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPA-RKFSTLKKI 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L IVF + EL+ LR+ G + L G+M Q R R R +L Sbjct: 235 LSDDFYG--IVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ D+SH+ N+ +P + + Y+HRIGRT R G+KG A++ + + L Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRY 352 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 + I+ + E P+ K+ +P + R + + + Sbjct: 353 IASVAGVDIQKSELSEELPREYHERYKREERPQRYRKNGRRDYSRGYSRR 402 >UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QS74_9SPHI Length = 475 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 155/450 (34%), Positives = 224/450 (49%), Gaps = 16/450 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M +T+F + EL+ LL A+ + G+T PT IQ IP +L DVLG A TGTGKTAAYLL Sbjct: 1 MEITSFEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L + + PR LIL PTREL MQ++ EL K+T L + GG+ Sbjct: 61 PILMKV---KYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQI 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E DI+VAT GR + + + + T++LDEAD+M+DMGF I I Sbjct: 118 ETLRNGVDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPT 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LLFSAT G ++ + LE P++V P + Q Y A + K +L Sbjct: 178 KRQNLLFSATF-GGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLD 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGI---NNCYLEGEMVQGKRNEAIKRLTEG 297 +L++Q + R I+F R + + +L I + Q R A+ EG Sbjct: 237 YLMRQEDFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEG 296 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + VLV+TDVAARGID+ +VSHV NFD+P + Y+HRIGRT RA R G AI+ + + Sbjct: 297 NIQVLVSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEE 356 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE---------KKKA 408 + K+ R I+ I + + P E++ + +R E +KK Sbjct: 357 YHVQKIERIIKATIPRQPLPAGVVVAETPFEEEQAMLREIDEQRRKEDPTFLGAFHEKKI 416 Query: 409 KEKEKPRVKKRHRDTKNIGKRRKPSGTGVP 438 R + + + + K+ PSG G Sbjct: 417 TNMAPGRERDKAQAKLSGAKKPSPSGPGTR 446 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 121/383 (31%), Positives = 196/383 (51%), Gaps = 19/383 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F ++ + E ++ +Q +TRPT +Q AIP ++ RD++ A TG+GKTAA+LLP Sbjct: 220 IESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPI 279 Query: 63 LQ------------HLLDFPR--KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIA 108 L HL + R ++ P L+L PTRELA+Q+ + AR+ A + + Sbjct: 280 LSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPC 339 Query: 109 TITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFA 168 + GG ++VAT GRL+ ++ + L+LDEADRMLDMGF Sbjct: 340 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 399 Query: 169 QDIEHIAGE--TRWR--KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ 224 I I + + +QT++FSAT + IQ A L++ + ++ + I Q Sbjct: 400 PQIRRIVEQDTMPPKGVRQTMMFSATFPKE-IQILARDFLDEYIFLAVGRVGSTSENITQ 458 Query: 225 WYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 284 ++++ ++ LL L + + ++VFV ++ L ++L G + G+ Q Sbjct: 459 KVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQ 518 Query: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344 R EA+ + G+ +LVAT VAARG+DI +V HV NFD+P + Y+HRIGRT R G Sbjct: 519 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 578 Query: 345 KGTAISLVEAHDHLLLGKVGRYI 367 G A S + + + + Sbjct: 579 LGLATSFFNEKNINITKDLLDLL 601 >UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammaproteobacteria RepID=Q4KGF7_PSEF5 Length = 473 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 170/445 (38%), Positives = 240/445 (53%), Gaps = 14/445 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+ L E LL+A+ + F PT +QAAAIP AL GRD+ +A TG+GKTAA++LP L Sbjct: 29 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 88 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L+ P K + LIL PTRELA Q ++ T + ITGG + A + + Sbjct: 89 LI-GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 147 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 DI++ T GR+L+ + N D + VE L+LDEADRMLDMGFA+D++ + E R+QT+ Sbjct: 148 VPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 207 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT G +++ ++L +P + N ++ + Q AD +HK ++ LL Sbjct: 208 LFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLAN 267 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++IVF R + L L GE Q R AI RL +G V +LVAT Sbjct: 268 ETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 327 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ + V NFDMPRSGD Y+HRIGRT RAG G AISL+ D L+ + R Sbjct: 328 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 387 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK----RAEKKKAKEKEKPRVKKRHR 421 Y+++ + R I E++ P + + + V K + +KKKA K + K +R Sbjct: 388 YLKQSFERRTIKEVKGTYSGPKKVKASGKAVGVKKKKTDAKGDKKKAVAKAPTKRKTANR 447 Query: 422 DTKNI---------GKRRKPSGTGV 437 + KRRKP Sbjct: 448 PKSDSLVSQDGLAPLKRRKPQAPAA 472 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 136/383 (35%), Positives = 199/383 (51%), Gaps = 17/383 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V+ F+E+ L E L + ++ + +PT IQ AIP A+ GRD++ A TG+GKTAA+ P Sbjct: 420 VSAFAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPI 479 Query: 63 LQHLLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 + +L + G P LIL+PTREL+ Q+ + A++ + T L + GG Sbjct: 480 ICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQ 539 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 DI+VAT GRL+ I+ R ++ L LDEADRMLDMGF I I + Sbjct: 540 QFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQM 599 Query: 179 ----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH 234 +QT+LFSAT + IQ A L + + +S I Q +D + Sbjct: 600 DMPPPGARQTMLFSATFPNE-IQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDK 658 Query: 235 KTALLVHLLKQPEATRS-------IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 287 + L+ LL+ R+ +VFV + V L WL G+ + G+ VQ +R Sbjct: 659 RYH-LMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMER 717 Query: 288 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 347 A+K G ++VATDVAARG+DIP V+HV NFD+P++ D Y+HRIGRT RAG+ G Sbjct: 718 ERALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGL 777 Query: 348 AISLVEAHDHLLLGKVGRYIEEP 370 A + + L + ++E Sbjct: 778 ATAFFNDGNLSLAKSLVELMQES 800 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 216/396 (54%), Gaps = 10/396 (2%) Query: 1 MTVTT---FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAA 57 MT TT F +L L +L+A+ + G+ PT IQ+ AIP L G+DVLG A TGTGKTAA Sbjct: 1 MTDTTQVRFDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAA 60 Query: 58 YLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAY 116 + LP L L ++ P++L++ PTRELA+QV++ + AKH L +AT+ GG +Y Sbjct: 61 FGLPLLSRLDADLKQ----PQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSY 116 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 + IVV T GR++ +IK+ ++ +LDEAD ML+MGF +DIE I Sbjct: 117 TPQLRDLARGPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILN 176 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKT 236 + + Q FSAT+ I+ + L DP+ V ++ KI Q + + KT Sbjct: 177 QIPDQTQMAFFSATMPAP-IKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIG-KT 234 Query: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L + + + IVFVR R LA L G L G+M Q R +++L Sbjct: 235 VGLERIAEVVDYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKN 294 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 GR+N+L+ATDV ARG+D+P ++HV N+D+P ++Y+HRIGRT RAGR+G AI + Sbjct: 295 GRINILIATDVVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHRE 354 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTG 392 L ++ R E I+ + +A E+ Sbjct: 355 VRSLSRLERITEGKIEVFDMPTAEQLGQARIERTQA 390 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 123/353 (34%), Positives = 180/353 (50%), Gaps = 6/353 (1%) Query: 19 LQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPR 78 +Q GF+ PT IQA + P AL RD++ A TG+GKT YL+P L P Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 305 Query: 79 ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLL 138 +L+L+PTRELA Q+ D A++ + + + + GG DIVVAT GRL Sbjct: 306 VLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLN 365 Query: 139 QYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQD 198 ++ V L+LDEADRMLDMGF I I + + ++QTL+F+AT + ++ Sbjct: 366 DILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKE-VRK 424 Query: 199 FAERLLEDPVEVSANPSTR--ERKKIHQWYYRADDLEHKTALLVHLLKQPEAT-RSIVFV 255 A LL +PV+V+ + + K I Q+ E K+ L +L+ E + I+F Sbjct: 425 IASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPE-KSRRLDQILRSQEPGSKIIIFC 483 Query: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 + +LA L + G+ Q +R+ + GR +LVATDVAARG+DI Sbjct: 484 STKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIK 542 Query: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 368 D+ V N+D P + Y+HRIGRT RAG G A + D + + +E Sbjct: 543 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595 >UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales RepID=A2U4F0_9FLAO Length = 411 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 144/395 (36%), Positives = 226/395 (57%), Gaps = 5/395 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS++ L++S+ +A+ + F +PT +Q IP LD ++V+ +A TGTGKTAA+ LP + Sbjct: 3 FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62 Query: 66 LLDFPRKKSG--PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L D + G + L++TPTRELA+Q+ ++ + +K+++L + GGV+ E+ Sbjct: 63 LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEPQKEIL 122 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++ DI+VAT GRL+ + N D +E +LDEAD MLDMGF DI+ I +KQ Sbjct: 123 AKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKKQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + I + ++ ++++ +V NP K I Q Y ++KT L +HLL Sbjct: 183 TLLFSATIP-EKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPK-KNKTDLCLHLL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + I+F R + V +L L + G N + G+ QG RN+AI+ + ++L+ Sbjct: 241 RNTINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILI 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI +V + NFD+P + Y+HRIGRT RAG+ G A S ++ + + Sbjct: 301 ATDVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIAFSFCSPDENNYIASI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 IE+ IK + D P + K+ K Sbjct: 361 ENLIEKSIKV-IEDHPYPINKPKHTKKQANTVSKH 394 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 138/406 (33%), Positives = 211/406 (51%), Gaps = 11/406 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F+++ L +S+++ + +TRPT IQA A+P AL GRD+LG A TG+GKTAA+ +P Sbjct: 122 IESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPM 181 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 +QH L P + G P L+L PTRELA Q+ + ++ A + GG Sbjct: 182 IQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQR 241 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +IVVAT GR + +++E N + ++LDEADRMLDMGF I + Sbjct: 242 SELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQ 301 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + QTLLFSAT+ + I+ A+ L +PV+V + + Q + + E LL Sbjct: 302 KHQTLLFSATMPME-IETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLA 360 Query: 241 HLLKQ--------PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 L+++ +IVFV ++ R E+A L G+ L G Q +R A++ Sbjct: 361 LLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALR 420 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 G N+LVATDVA+RG+D+ V+HV N D+P++ + Y+HRIGRT RAG G A S Sbjct: 421 DFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFY 480 Query: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 D L+ + + I + + K E++ K+ Sbjct: 481 TDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEA 526 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 136/376 (36%), Positives = 208/376 (55%), Gaps = 5/376 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSE ++ ++ + PT IQ P AL GRD++G A TG+GKTA++LLPA+ H Sbjct: 79 FSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIVH 138 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 P K G P +LIL PTRELA QV A + A + GG + AE Sbjct: 139 AKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEALG 198 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 ++ ++V+AT GRLL +++ + + R L+LDEADRMLDMGF I + + R +QT Sbjct: 199 QSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQT 258 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVHLL 243 L++SAT + ++ AE L D ++++ + I Q ++ E K L+ LL Sbjct: 259 LMWSATWPRE-VKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESE-KFKRLLSLL 316 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + R +VF ++R EL L++ G + + G+ Q +R+ A+ EG ++VLV Sbjct: 317 NSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVLV 376 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVA+RG+DI DV ++ N+D P + Y+HRIGRT R+ +KGTA + A L ++ Sbjct: 377 ATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLAREL 436 Query: 364 GRYIEEPIKARVIDEL 379 ++E + + DEL Sbjct: 437 IEVLKEA-RQTIPDEL 451 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 143/371 (38%), Positives = 206/371 (55%), Gaps = 4/371 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF++L L E L A+ D G++ PT +Q AIP L+GRD++ +A TGTGKTAA+ LP Sbjct: 23 IATFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPT 82 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L L R P ++I+TPTRELA Q++D +A+ T+ + GGV Y + Sbjct: 83 LDQLRY--RADDEGPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKK 140 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 DI++AT GRLL +++ D VE L+LDEADRMLDMGF + I + Sbjct: 141 LRAGADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAER 200 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT++ LL+DP + I Q+ + D K ALL Sbjct: 201 QTLLFSATIDRSQ-DKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDR-RLKPALLNSF 258 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +++ R IVF R + LR+ GI + + Q +R A+ EG+ +VL Sbjct: 259 VRERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVL 318 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDV +RGID+P+V +V N+D+P + Y+HRIGRT RAG +G A+S V LL Sbjct: 319 VATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKS 378 Query: 363 VGRYIEEPIKA 373 + ++I++ I+ Sbjct: 379 IQKFIDQTIEV 389 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 153/401 (38%), Positives = 224/401 (55%), Gaps = 7/401 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F ++ L L A+ + GFT P+AIQA AIPP L+GRDV+G A TGTGKTAA+ LP L Sbjct: 85 SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 + R+ + L+L PTRELAMQV+D A LD+ + GG Y Sbjct: 145 AIDPSLRE----VQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERAL 200 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +VV T GR++ +++ N + +LDEAD ML MGFA+D+E I + +Q Sbjct: 201 ARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQ 260 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LFSAT+ AIQ A+ ++DPV VS +P + K +HQ Y H+T L +L Sbjct: 261 VALFSATMPA-AIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVP-FRHRTGALARVL 318 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +A +IVFVR R E+ L G+ + G++ Q +R + ++RL +G + VLV Sbjct: 319 ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLV 378 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ + V NFD+P+ ++Y+HRIGRT RAGR G A++ + H+ L + Sbjct: 379 ATDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNI 438 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 R ++ + VI R ++ Q + +V R E Sbjct: 439 ERATKQTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLE 479 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 149/404 (36%), Positives = 217/404 (53%), Gaps = 7/404 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +V F+EL L+E++L AL GF PT IQAAAIP L+GRD LG A TGTGKTAA+ LP Sbjct: 32 SVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLP 91 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 L + K P+ +I+ PTRELA+QV+ + L + L + I GG + ++ Sbjct: 92 LLNKINLNQHK----PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 147 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S IVV T GR+ + + T +LDEAD ML MGF D+ I + Sbjct: 148 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 207 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q +LFSAT+ ++ +R L +P +V + K+ Q Y+ +E K + Sbjct: 208 SAQRVLFSATMP-PMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVE-KDEAMS 265 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL+ E SIVFVR R+ LA+WL G L G++ Q R + + +G ++ Sbjct: 266 RLLETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVID 325 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDV ARG+D+P ++HVFN+D+P ++Y+HRIGRT RAGRKG AI LV + +L Sbjct: 326 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRML 385 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + R + ++ + + A K + + +K E Sbjct: 386 RTIERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALE 429 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 151/437 (34%), Positives = 222/437 (50%), Gaps = 6/437 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F+ L L + LL +L+ G+ T IQAAAIP L G D+L +A TG+GKTAA+ LP + Sbjct: 1 MSFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPII 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT--HLDIATITGGVAYMNHAE 121 + L +K PR L+L PTRELA+QV A+ + GGV Y + Sbjct: 61 ERLAGMEEQK-AKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMK 119 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 ++VVAT GRL+ + + VE L+LDEADR+L +GFA+++ I Sbjct: 120 AAYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEG 179 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q LLFSAT + + A LL+DPV++ ++R + I Q D +T LL H Sbjct: 180 RQNLLFSATFPQNVV-SLANALLKDPVKIELEAASRPVESIAQRAIEVDGNS-RTGLLRH 237 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL+ R +VFV + R + L++ GI L G M Q KR +++R + +V V Sbjct: 238 LLETEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRV 297 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARGIDI + V N+D+PRS Y+HRIGRT RAG G A++ + Sbjct: 298 LMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFR 357 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK-KAKEKEKPRVKKRH 420 + + ++ ++ P+ P + GK K + K + K R + Sbjct: 358 LIEKKNGLRLERERLEGFVPENWNPEDPAKGKAPVKGKRPSKKDKLRKAAAGKARGSGGN 417 Query: 421 RDTKNIGKRRKPSGTGV 437 +D + R TG Sbjct: 418 KDVSSPWARALRKATGE 434 >UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family n=54 Tax=cellular organisms RepID=B2S5R2_BRUA1 Length = 531 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 151/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L + LL+ ++ G T P IQ AIP L+G+D+LG A TG+GKTAA+ LP LQ Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 66 LLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 ++ +++ R LIL PTRELA+Q+ R ++K H+ A + GGV+ ++ + + Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+++AT GRL +++ D L+LDEADRMLDMGF D++ IA T +QT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ + I AERLL DPV V P +I Q + E K LL +L Sbjct: 269 ALFSATMPKE-IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKE-KRRLLSAMLT 326 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + IVF R + + L + + G Q R A+ +G + +LVA Sbjct: 327 DADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVA 386 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKV 363 TD+AARGID+P +SHV N+D+P +TY+HRIGRT R G G +I+L + + L V Sbjct: 387 TDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAV 446 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R + + P AP+ G + ++AE +KA + R ++ + Sbjct: 447 ERVTRSKLSIKD----APVKLAPAPVAKGPAPQGQRTEQAESRKAPAHKHRRPAQKAGEQ 502 Query: 424 KNIGKRRKPSGTGVPPQT 441 G P+ Sbjct: 503 HRAGAHASAGEAAPKPKR 520 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 136/428 (31%), Positives = 219/428 (51%), Gaps = 13/428 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ +F E + + + L F +PT +Q +IP + GRD++ A TG+GKTAA+LLP Sbjct: 350 SIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLP 409 Query: 62 ALQHLLDFPRKKSG-----PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 L ++ S P+ L++ PTRELA+Q+ + AR+ + T L + GG + Sbjct: 410 VLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSV 469 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 + IVV T GRL+ I + ++ LILDEADRMLDMGF DI+ I Sbjct: 470 GYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVH 529 Query: 177 ET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDL 232 E + +QTL+FSAT + IQ A L D + ++ + Q +++ D Sbjct: 530 ELGTPEKTERQTLMFSATFP-EEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDR- 587 Query: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 + K L +L + A +++VFV ++ LA++L E+G + G+ +Q +R EA++ Sbjct: 588 QQKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALR 647 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 +G+ +L+AT VAARG+DIP+V HV N+D+P+S D Y+HRIGRT R G G A S Sbjct: 648 DFKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFF 707 Query: 353 EAH-DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 D L + R + + + D L ++ + + + K + + + Sbjct: 708 SEDGDGSLAKPLMRIL-VDAQQNIPDWLEASGQSSMSSGSYSGGGRFGGRDIRKDQERTR 766 Query: 412 EKPRVKKR 419 E + Sbjct: 767 EHAGNGQN 774 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 131/402 (32%), Positives = 209/402 (51%), Gaps = 12/402 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLP 61 + F+E L +L+A+ + G+ PT IQ IP L RD++ A TGTGKTAA+ LP Sbjct: 1 MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L + D RK ++L+L PTREL +Q+S + +K+ + + GG + + Sbjct: 61 ILDMIDDTSRK----IQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQM 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + I+V T GR++ I + D A+ L+LDEAD ML MGF ++E I ET Sbjct: 117 RSLKDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPE 176 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQT LFSAT+ + ++ ++ L P +S +K I YY K L Sbjct: 177 TKQTFLFSATMNKE-VERISKNYLTKPHRISVGSINEVKKNITHEYYVV-GYRQKKEALK 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+ SI+F R R E+A++L + G L G++ Q +R+ +K+ ++ Sbjct: 235 RLIDANPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNID 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ ++HV +F +P + ++HR GRT RAG+ G +++L++ + L Sbjct: 295 ILVATDVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKL 354 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 ++ + I R I P + Q G +K+L + Sbjct: 355 KQIKSATKIEIHERTI----PTGDDIIKAQVGGVFEKLLTEH 392 >UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammaproteobacteria RepID=RHLB_PSEPK Length = 398 Score = 525 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 147/389 (37%), Positives = 207/389 (53%), Gaps = 10/389 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F + +L L+ A+ D GF T IQA + L G+D +G A TGTGKTAA+L+ + Sbjct: 9 TRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISII 68 Query: 64 QHLLDFPRKKS---GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L P K G PR LI+ PTREL +Q++ A L K+T L++ + GG+ + Sbjct: 69 SQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQL 128 Query: 121 EVFS-ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DI+VAT GRLL + + VE ++LDEADRMLDMGF + I +T Sbjct: 129 KALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP 188 Query: 180 W--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 +QTLLFSAT D + + A++ +P V P + + Q Y + K Sbjct: 189 PKSERQTLLFSATFTDD-VMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSD-KYK 246 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL +L+ Q + R +VF +++ V + L GIN L G++ Q KR ++ EG Sbjct: 247 LLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREG 306 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 R+ VLVATDVA RGI I +SHV NF +P D Y+HRIGRT RAG G +IS D Sbjct: 307 RITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDS 366 Query: 358 LLLGKVGRYIEEPIKARVIDE--LRPKTR 384 L + + IK + + L+P R Sbjct: 367 YQLPAIEALLGRKIKCEMPPDELLKPVPR 395 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 137/441 (31%), Positives = 231/441 (52%), Gaps = 23/441 (5%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 F L + + L+ L +G PTA+Q AIP L+GRD++ A TGTGKT A++LP L+ Sbjct: 23 NFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILE 82 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF 123 + +G + LI+TPTRELA+Q++ ++L + L++ + GG Sbjct: 83 KI----DPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKL 138 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 IVVAT GRLL +++ V L+LDEAD+ML +GF ++E I +T +Q Sbjct: 139 QRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQ 198 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ D I+ +++ L++P + + K I Q D + AL+ + Sbjct: 199 TMLFSATMPDD-IRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRI- 256 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ +I+F R R +L + L+ + L G++ Q KR + +K+ + L+ Sbjct: 257 REDRPFLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLI 316 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ V+HV+N+D+P+ ++Y+HRIGRT RAG+ G A++ D L + Sbjct: 317 ATDVAARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAI 376 Query: 364 GRYIEEPIKA--------------RVIDELRPKTRAPSEKQTGKP-SKKVLAKRAEKKKA 408 + + + + +PK R+ +++ G S++ R E + + Sbjct: 377 EQELNIRLPKEESTATANTTADGEKSSSGDKPKNRSDRDRRAGGAESRRRTGGRTEGRGS 436 Query: 409 KEKEKPRVKKRHRDTKNIGKR 429 +E R +R R+ + G+R Sbjct: 437 REVRSTRSGER-RNRSSEGRR 456 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 138/374 (36%), Positives = 196/374 (52%), Gaps = 5/374 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F L+L +L + G+T PT IQ AIP L G D++GSA TGTGKTAA+ LP L Sbjct: 3 FKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILTR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 L + PR+L+L PTRELA QV R+ A+ T L + GGV Y Sbjct: 63 LGAHA---ARAPRVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKR 119 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D++VAT GRL+ Y+ + + + VE L+LDE DRMLDMGF ++ I ++QTL Sbjct: 120 GVDVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTL 179 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ + IQ A L +P V + + + Y + K LL LL + Sbjct: 180 FFSATVPPE-IQAVASFALRNPTRVEVGVNRSVNESVKHALYPVA-ADQKFELLEALLAR 237 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + +VF R + ++A L+ A + L Q +R EA+ G+ ++VAT Sbjct: 238 TDFDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVAT 297 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARGID+ VSHV N+D+P + Y+HRIGRT RA G A +LV + + + R Sbjct: 298 DIAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDIER 357 Query: 366 YIEEPIKARVIDEL 379 +I + I + Sbjct: 358 FIGQKIPELRLAGF 371 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 212/368 (57%), Gaps = 6/368 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF +L + + +AL+ +G P IQ A+P AL+G+D++G A TGTGKT A+ + Sbjct: 38 LTTFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAM 97 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ + PRK PR L++ PTRELA+QV++ A I T+ GG AY E Sbjct: 98 LQRV-GKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEA 156 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + D++V T GRLL +K+++ D ++ L+LDEADRMLD+GF DIE I ++ Sbjct: 157 LKQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKR 216 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSA---NPSTRERKKIHQWYYRADDLEHKTALL 239 QT+LFSATL G+ + + R L P V A + + Q+ +RA ++ K ++ Sbjct: 217 QTMLFSATLPGEIVA-LSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMD-KIEIV 274 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL+ +++F + + L+E G + G++ QG+R +A++ G++ Sbjct: 275 GRLLQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKI 334 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATDVAARGID+ DV+HV N+D P+ Y+HRIGRT RAG+ G A++ VE D Sbjct: 335 DVLVATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTR 394 Query: 360 LGKVGRYI 367 + + Sbjct: 395 WKVINNAL 402 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 206/386 (53%), Gaps = 5/386 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL L +++ + + D + +PT IQ+ +IP AL G D++G A TG+GKTAA+L+PA+ Sbjct: 126 TFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAMV 185 Query: 65 HL-LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H+ L P + P +L+L+PTRELA Q+++ A+ + + + GG A Sbjct: 186 HIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQANDL 245 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +VVAT GRL+ +I+ V L+LDEAD+MLDMGF I I G +Q Sbjct: 246 RHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQ 305 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVE-VSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 T++FSAT + IQ A L DPV + N I Q + ++ E K + + + Sbjct: 306 TMMFSATWPKE-IQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFE-KLSKCLEV 363 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + + + I+F + + +L L G L G+ Q +R+ + + + +L Sbjct: 364 LNEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGIL 423 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ D+ V N+D P +TY+HRIGRTAR ++G A++ + + K Sbjct: 424 VATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRK 483 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSE 388 + + + + K + D L+ + Sbjct: 484 LAKIMTQA-KQELPDWLKALADVTPK 508 >UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBH5_9GAMM Length = 448 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 181/437 (41%), Positives = 255/437 (58%), Gaps = 5/437 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ +L L A++ G+T PT +Q A+IP ALDG+D+L SA TG+GKTAAYLLPAL Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L + K+G R+L++ PTRELA QV L + T L I GG + A + Sbjct: 62 VLSERKPKAG-IRVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRR 120 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 N +IV+AT GR+ +++ + + D VE L+LDE DRMLDMGF ++ IAG+ R QTL Sbjct: 121 NPEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDMGFRDEVLAIAGQIRNDHQTL 180 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 L SATL+ + A+ +L D + P + + I Q +D HKT L+ LL Sbjct: 181 LLSATLKHRGVSSVAKDILNDAEFIQIKPEMLQ-ENIRQQRIFSDGPAHKTKLVDWLLSH 239 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++IVF + R + ELAN LR L GE+ Q +RN + R +G V+V+VAT Sbjct: 240 ETFQKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVAT 299 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 D+AARG+D+ V V NFD+ +SGD ++HR+GRT RAG+ G A+SLV AHD+ L+ + R Sbjct: 300 DLAARGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIER 359 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKN 425 Y+ + R ID L+ K + P++ K S K + + +K K K R R TKN Sbjct: 360 YLGIRFEPREIDSLKAKYKGPAK---VKSSGKAVGHKKKKADTTTSRKKASKVRKRQTKN 416 Query: 426 IGKRRKPSGTGVPPQTT 442 IGKRR P+ T P + Sbjct: 417 IGKRRAPAATSQPIEDG 433 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 120/379 (31%), Positives = 192/379 (50%), Gaps = 11/379 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F ++ + + AL++ F PT +Q AIP A+ GRD++ + TG+GKT A+L+ Sbjct: 1 MENLKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++L + ++L PTRELA QV AR + K I GG Sbjct: 61 PIFENL-------NSGLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQI 113 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +V+ T GR++ ++ + + +LDEADRMLDMGF DI+ I +T Sbjct: 114 AGLK-GASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPK 172 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ +LFSAT+ + I A R +++P ++ + + + Q+Y ++ +K A L Sbjct: 173 DKQMMLFSATMPPEII-SLARRYMKNPEKIILSEDEITAENVAQYYVEVGEI-NKIAKLS 230 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL ++F R + +A L++ G L G+M Q R + +G+++ Sbjct: 231 SLLISERGKY-LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKID 289 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LV+TDVAARGID+ ++HV N+D+P Y+HRIGRT R G AI+ V D Sbjct: 290 ILVSTDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYF 349 Query: 361 GKVGRYIEEPIKARVIDEL 379 ++ +I + I I + Sbjct: 350 RRIEDFIGKRIPKMEIKNV 368 >UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 n=2 Tax=Hydra magnipapillata RepID=UPI00019259AA Length = 790 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 148/446 (33%), Positives = 218/446 (48%), Gaps = 18/446 (4%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F D+ L+ ++ +++PT IQ+ A+P AL GRD++G A TG+GKTAA++ P L Sbjct: 277 SFGHFGFDDHLMGVIRSSNYSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPMLV 336 Query: 65 HLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H++ P K G P LI PTREL Q++ + K +L + GG + + Sbjct: 337 HIMAQPVLKEGDGPIALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWEQTKGL 396 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +IVV T GRL+ IK + + V L+ DEADRM DMGF + IA R +Q Sbjct: 397 QQGAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQ 456 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK-TALLVHL 242 LLFSAT+ ++ +L DP+ + + I Q + K LL H+ Sbjct: 457 CLLFSATM-KKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSHI 515 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 ++ ++FV K+ E+A L+E G + G+ Q +RN +K+ + + +L Sbjct: 516 VEFTSGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLIL 575 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DIP + V N+D+ R T+ HRIGRT RAG KG A +L+ D Sbjct: 576 VATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQDTHFAAD 635 Query: 363 VGRYIEEPIKARVIDELR------PKTRAPSEKQTGKPSKKVLAKR-------AEKKKAK 409 + R +E RV DEL P R K+ K + K R E K Sbjct: 636 LVRNLEGA-NQRVPDELLDLALKNPWFRKTRAKRGRKAANKEFTPRDRPGLGLPEGKGGG 694 Query: 410 EKEKPRVKKRHRDTKNIGKRRKPSGT 435 E + N G +R PS + Sbjct: 695 NDEGNLADEEELTVGNSGGKR-PSRS 719 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 127/395 (32%), Positives = 202/395 (51%), Gaps = 22/395 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F E L L++ ++ GF +PT +Q +IP L GRD+L A TG+GKT A+L P Sbjct: 151 IAAFKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPI 210 Query: 63 LQHLLDFPRKKS------------GPPRILILTPTRELAMQVSDHARELAKHTHLDIATI 110 + +L+ P ++ P +LI+ PTREL+ Q+ D +R+ HT Sbjct: 211 ISNLMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVA 270 Query: 111 TGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 GG A + DI+VAT GRL+ I + V+ L+LDEADRMLDMGF Sbjct: 271 YGGAAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQ 330 Query: 171 IEHIAGET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWY 226 I +I +T ++ TL+FSAT + IQ A L + + ++ + I Q + Sbjct: 331 IRYIVEKTGMPAPGQRITLMFSATFPKN-IQTLARDFLHNNLNLTVGRVGSTHENILQKF 389 Query: 227 YRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 286 D E + +L + T ++VFV+ ++ L +L + G + + G+ Q + Sbjct: 390 VYCKDDEKRDLMLEAIASVE--TLTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRE 447 Query: 287 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 346 R A++ G +LVATDVA+RG+DI DV HV N+D+P + + Y+HRIGRT RAG G Sbjct: 448 RETALENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTG 507 Query: 347 TAISLVEAHDHLLLGKVGRYIE---EPIKARVIDE 378 + S ++ + + +E + + +++ Sbjct: 508 ISTSFFTDKNNQIADDLITVLEEAKQEVPPFIVEG 542 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 217/401 (54%), Gaps = 7/401 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLP 61 + F L L ++++EAL+ KGFT PT IQ IP L G +D++G A TGTGKTAA+ LP Sbjct: 1 MEKFRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++++ R+ +G + ++LTPTRELAMQV+D + +AT+ GG + + Sbjct: 61 IIENV----REGAGHVQAIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLK 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DIVV T GR+L +I+ + D + +LDEAD M +MGF +++ I Sbjct: 117 ALKRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGED 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 ++TLLFSAT+ + + + A++ + D VS E ++ ++ + + L Sbjct: 177 RRTLLFSATMPRE-VMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERD-RFEALCR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ +VF R R +A L E G + G++ Q +R + + R + R + Sbjct: 235 VVDAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKI 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGID+PD+SHV NF +P+ +++HR+GRT RAG+KG A++L+ + L Sbjct: 295 LVATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLR 354 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 + + + + + + + + + S+ V A + Sbjct: 355 YITKITKLRVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGK 395 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 8/378 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLP 61 + F +L L+ESLL+A+ D GF P+ +Q AIP L+ D++ A TGTGKTAA+ P Sbjct: 1 MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 +Q + R + L+L+PTREL +Q+++ + +K+ +++ + GG + A Sbjct: 61 LIQKIDADNRN----TQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQA 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 I+VAT GR+ I + + ++ ILDEAD ML+MGF +DI I +T Sbjct: 117 REIKRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPD 176 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +K T LFSAT+ + + A++ + +PVE++ + +Y + + L Sbjct: 177 QKNTWLFSATMPQE-VARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVN-ARDRYEALK 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L S+VF R + +A L E G + L G++ Q +R+ +K ++ Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQ 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGID+ +V+HV N+ +P +TY HR GRT RAG+ GT+I +V + + Sbjct: 295 MLVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKI 354 Query: 361 GKVGRYIEEPIKARVIDE 378 + R I++ + + I Sbjct: 355 SSIERIIKQKFEEKAIPS 372 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 202/378 (53%), Gaps = 8/378 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLP 61 ++TF EL L E + +AL D G+ +PT IQ AIP + R D+ A TGTGKTAA+ LP Sbjct: 1 MSTFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L+ L SG + +IL+PTRELA+Q+ ++ ++ K+ + + T+ GG + + Sbjct: 61 ILELL----DSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQI 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVV T GR + IK V+ L+LDEAD ML+MGF +++ + T Sbjct: 117 RSLKRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPD 176 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQTLLFSAT + ++ A+ + PVE+++ + + YY + + L Sbjct: 177 TKQTLLFSATFPKE-VESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTE-RTRYPALK 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + +I+F R R E+A+ L + G + L G++ QG+R+ + + + + Sbjct: 235 RIADLNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQ 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ +++HV N +P + Y HR GRT RAG G +I LV + L Sbjct: 295 ILVATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKL 354 Query: 361 GKVGRYIEEPIKARVIDE 378 + + I++ + Sbjct: 355 RPIEKIIQKKFTEAKVPS 372 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 196/386 (50%), Gaps = 7/386 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+EL L +L A+ GF IQAA IP L GRDV+G + TG+GKT A+ + Sbjct: 1 MEKRPFAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 PAL+ + K ++L+L PTRELA+QV++ LA+ + I GG +Y Sbjct: 61 PALERV----DPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +V+ T GR++ +++ A++ ++LDEADRMLDMGF +DIE I Sbjct: 117 YRALAAGSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q L FSAT+ IQ+ +R DP + + ++ Q Y+ D K L Sbjct: 177 VPRQLLFFSATMPRP-IQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDR-RSKLEAL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L+ + IVF + V +L L G L G++ Q +R+ + + Sbjct: 235 TRLIDVHDFRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGF 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 L+ATDVAARG+D+ D+ VFN+D+P + Y HRIGRT RAG+ G A + V + Sbjct: 295 EFLIATDVAARGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYK 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRA 385 L + R+ + ++ + L A Sbjct: 355 LQAMVRWAKLDLRRGRLPSLDEVEEA 380 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 212/370 (57%), Gaps = 7/370 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 V TF E +L + L++ ++ +T PT IQ +IP GRD++ A TG+GKTAA+LLP Sbjct: 1012 VKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLPI 1071 Query: 63 LQHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L H+LD + + G P+ +I++PTRELA+Q+ + AR+ A +++L I + GG + E Sbjct: 1072 LNHILDKGYELEIGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNE 1131 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE--TR 179 ++ I++AT GRLL +++ ++LDEADRMLDMGF++ + I R Sbjct: 1132 SITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTMR 1191 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 QTL+FSAT + IQ A L D V V+ + Q Y D +K A L Sbjct: 1192 KEHQTLMFSATFP-EEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKF-NKRAKL 1249 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + +L+ A +IVFV + LA++ E + G+ +Q +R +A++ G++ Sbjct: 1250 MEILRD-GADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKM 1308 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHL 358 VL+AT VA+RG+DI +VSHV N+DMP + D Y+HRIGRT R G G A S ++ D Sbjct: 1309 KVLIATSVASRGLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSFFDSDKDRA 1368 Query: 359 LLGKVGRYIE 368 L G + + +E Sbjct: 1369 LAGDLVKILE 1378 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 153/398 (38%), Positives = 219/398 (55%), Gaps = 7/398 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L E LL A+++ GF+ PTAIQAAAIP L GRDV+G A TGTGKTAA+ LP L H Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 + R+ + L+L PTRELAMQ + A K +D+A + GG +Y+ + Sbjct: 189 IDPEKRE----VQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALE 244 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ + AV +LDEAD ML MGFA+D+E IA E + + Sbjct: 245 GGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRIS 304 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ I+ AER L D EV+ + + Q Y + HK L +L Sbjct: 305 ALFSATMPPP-IRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPE-RHKIGALARVLA 362 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 EA ++VFVR R +L L G+ L G++VQ +R + + RL +G ++VLVA Sbjct: 363 VTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVA 422 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V NFD+PR DTY+HRIGRT RAGR G +I+ V + L ++ Sbjct: 423 TDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIE 482 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 + ++ + ++ + + + +V R Sbjct: 483 KQTGSRMEQIELPTPAEVSKLRARRTVEQAMARVAKGR 520 >UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=Eukaryota RepID=RH24_ORYSJ Length = 770 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 135/381 (35%), Positives = 209/381 (54%), Gaps = 7/381 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F++ L+ A+ +G+ +PT IQ A+P L GRD++G A TG+GKTAA++LP Sbjct: 218 IKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 277 Query: 63 LQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + H++D P +K P ++ PTRELA Q+ A++ AK +L +A + GGV+ + + Sbjct: 278 IVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFK 337 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +IV+AT GRL+ +K + L+LDEADRM D+GF I I G+ R Sbjct: 338 ELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPD 397 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWY-YRADDLEHKTALLV 240 +QTLLFSAT+ ++ A +L DP+ V+ + I Q D E LL Sbjct: 398 RQTLLFSATMPYK-VERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLE 456 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + +VF K+ RV E+ + L + G L G+ Q R E +++ G + Sbjct: 457 KLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 516 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLL 359 VLVATDVAARG+DI + V NFD+ + D ++HRIGRT RAG + GTA +L+ + Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRF 576 Query: 360 LGKVGRYI---EEPIKARVID 377 G++ + + + ++D Sbjct: 577 AGELVHCLIAAGQDVPNELMD 597 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 149/410 (36%), Positives = 220/410 (53%), Gaps = 11/410 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F +L L ++LL+A+ GFT PT IQ AAIP L GRD++G A TGTGKTAA+ LP L Sbjct: 21 SFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLA 80 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVF 123 + + + L+LTPTRELA+QVSD + + I GG +++ Sbjct: 81 AV----DPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGL 136 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +VV T GR++ ++ + D A+ L+LDEAD ML MGFA+D++ I +T KQ Sbjct: 137 ERGAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQ 196 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LFSAT+ I+ AE L +P E++ + Q Y +K L +L Sbjct: 197 VALFSATMPPP-IRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVP-YRNKAEALSRVL 254 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +A +IVFVR RE E+ L GIN + G++ Q +R ++RL G ++VLV Sbjct: 255 ATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLV 314 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ + V NFD+PR +TY+HRIGRT RAGR G A++ + + L + Sbjct: 315 ATDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTI 374 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 R +R+++ P + +TG A+ + +E+ Sbjct: 375 ERVTG----SRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHRER 420 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 124/443 (27%), Positives = 211/443 (47%), Gaps = 27/443 (6%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F +++L E + ++ + +PT +Q AIP L GRD++ A TG+GKTAA+L+P Sbjct: 266 ITSFDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPI 325 Query: 63 LQHLLDFP-----------RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATIT 111 L +L+ +++ P L+L PTRELA Q+ + A++ + + + A + Sbjct: 326 LNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLY 385 Query: 112 GGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDI 171 GG ++VAT GRL I + L+LDEADRMLDMGF I Sbjct: 386 GGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQI 445 Query: 172 EHIAGE--TRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY 227 HI ++QTL+FSAT + IQ+ A L + + ++ + I Q Sbjct: 446 RHIIENRDMPPTGQRQTLMFSATFPKN-IQELASDFLSNYIFLAVGRVGSTSENITQTIL 504 Query: 228 RADDLEHKTALLVHL--LKQPEATR-----SIVFVRKRERVHELANWLREAGINNCYLEG 280 ++ E ++ LL L L++ +++FV ++ L +L + + G Sbjct: 505 WVNENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHG 564 Query: 281 EMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTA 340 + Q +R +A+K G +LVAT VAARG+DIP V HV N+D+P + Y+HRIGRT Sbjct: 565 DRSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTG 624 Query: 341 RAGRKGTAISLVEAHDHLLLGKVGRYI---EEPIKARVIDELRPKTRAPSEKQTGKPSKK 397 R G G A S + ++ + + + + + + + + P + Sbjct: 625 RMGNLGIATSFFNEKNRNIVSDLVELLIETNQELPSFLEEMANDRYGGP-RRSNNSRGGG 683 Query: 398 VLAKRAEKKKAKEKEKPRVKKRH 420 +++ +P+ +R+ Sbjct: 684 NRYGGGTAFGSRDYRQPQSNQRY 706 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 522 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 124/377 (32%), Positives = 191/377 (50%), Gaps = 12/377 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL+LD ++ + + RPT IQ AIP L+ RD++ A TG+GKTAA+L+P Sbjct: 183 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 242 Query: 63 LQHLL-----DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 + HL+ K+ P+ LIL PTRELA+Q+ +++ + +T L + GG Sbjct: 243 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 302 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA-- 175 + ++VAT GRL+ +I++ + ++LDEADRMLDMGF I I Sbjct: 303 SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 362 Query: 176 GETRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE 233 +QTL+FSAT + IQ A L + + ++ I Q D+E Sbjct: 363 SNMPSGINRQTLMFSATFPKE-IQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVE 421 Query: 234 HKTALLVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 K L ++ ++FV ++ LA +L G + G+ Q +R A+ Sbjct: 422 -KLNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALS 480 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 G+ +LVAT VAARG+DIP+V HV N+D+P + Y+HRIGRT R G G A S Sbjct: 481 MFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFY 540 Query: 353 EAHDHLLLGKVGRYIEE 369 ++ + + ++E Sbjct: 541 VDKNNNIAIDLVDLLKE 557 >UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudomonadaceae RepID=A6V0P4_PSEA7 Length = 529 Score = 522 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 148/389 (38%), Positives = 205/389 (52%), Gaps = 10/389 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F + L SL+ A+ D GF T IQA + L G+D +G A TGTGKTAA+L+ + Sbjct: 141 TRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISII 200 Query: 64 QHLLDFPRKKS---GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LL P K G PR LI+ PTREL +Q++ A L K+T L++ T GG+ + Sbjct: 201 TQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL 260 Query: 121 EVFSEN-QDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DI+VAT GRLL + + VE ++LDEADRMLDMGF + I +T Sbjct: 261 KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP 320 Query: 180 W--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 +QTLLFSAT D + + A++ DP V P + Q Y + K Sbjct: 321 HKGERQTLLFSATFTDD-VMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSD-KYK 378 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL +L+ Q R +VF +++ V + L + GI+ + G++ Q KR ++ EG Sbjct: 379 LLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREG 438 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 ++ VLVATDVA RGI I +SHV NF +P D Y+HRIGRT RAG GT+IS D Sbjct: 439 KIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDA 498 Query: 358 LLLGKVGRYIEEPIKARVIDE--LRPKTR 384 L + + I + L+P R Sbjct: 499 FALPPIEELLGRKITCEMPPAELLKPVPR 527 >UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gammaproteobacteria RepID=Q12PC3_SHEDO Length = 468 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 169/433 (39%), Positives = 237/433 (54%), Gaps = 7/433 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS+ LD+ LL++L+ G T PT IQ A+P AL G+D++ S+ TG+GKT A+LLPA+Q Sbjct: 14 FSDFSLDKRLLDSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAMQR 73 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 ++ PR+LIL PTRELA QV R L +T +I GG + + A+ S Sbjct: 74 IISTKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKALSR 133 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET-RWRKQT 184 +VAT GR+ ++++ + +E LILDEADRMLD+GFA + I R+QT Sbjct: 134 EPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRRQT 193 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L+FSATLE D I + A LL+ P ++ + E I Q D L+HK ALL H+L Sbjct: 194 LMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHVLT 253 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + I+F R LA+ L + G L G + QG RN+ + + G+ +LV Sbjct: 254 NETNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQILVT 313 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVA+RG+D+ +VS V NFDMP+ + Y+HRIGRT RAG KG A+SLV D KV Sbjct: 314 TDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWDSFIKVQ 373 Query: 365 RYIEEPIKARVIDELRPKTRAPSEK-QTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR-- 421 ++ + + VID L+ K K +T K + +A K KP K+ R Sbjct: 374 AFLRKTFEFTVIDGLKAKFSGLKAKAKTDKVNSTKRVAKAASKAKSPHAKPAPKRDKRFS 433 Query: 422 ---DTKNIGKRRK 431 D + RRK Sbjct: 434 TGVDVGDAPMRRK 446 >UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=Bacteria RepID=C7PCT4_CHIPD Length = 444 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 141/438 (32%), Positives = 226/438 (51%), Gaps = 15/438 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E +LD+ +L+ + G+T T +Q IPP + G+D+L A TGTGKTAA+LLP L Sbjct: 3 FDEFDLDDRVLDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPILHR 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVA---YMNHAEV 122 L+ P + LI+ PTRELA+Q++ ++ T + + GG + + Sbjct: 63 LITEPH-DARKINSLIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKKA 121 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + DIV+ T GR++ ++ AV+ L+LDEADRMLDMGF+ DI I + Sbjct: 122 LTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKER 181 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT+ D I+ A ++L P E++ ++ +KI Q + + E KT L+ L Sbjct: 182 QNLLFSATMP-DKIRKLALKILHQPEEINI-AISKPPEKIVQEAFVVFE-EQKTGLIKQL 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + E I+F +++ V +L L++A + + ++ Q KR + + ++ +L Sbjct: 239 LARKEFGCIIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKML 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+ +RGIDI D+ V N+D+P + Y+HRIGRTARA GTA +++ + + Sbjct: 299 VATDILSRGIDIEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFAR 358 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + + +P+ + P P + + KP + KR + KK + + Sbjct: 359 IEEVLGKPVTKAEV----PAALGPVPEYSPKPFRSGGGKRPQGKKRPGGGGGGNRNHSKP 414 Query: 423 TKNIGKRRKPSGTGVPPQ 440 N G P G PQ Sbjct: 415 GGNQG----PRPQGGHPQ 428 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 142/402 (35%), Positives = 219/402 (54%), Gaps = 7/402 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPAL 63 F +L + E +LEAL+ KGF P+ IQA IP L+G D++G A TGTGKTAA+ +P + Sbjct: 6 NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVI 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + L + KK P+ LIL+PTREL++Q+++ L L IA GG + Sbjct: 66 E-LCEGGGKK---PQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMIEIQLQRL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+V+ T GR++ ++ D ++ +LDEAD MLDMGF +DIE I G T K+ Sbjct: 122 RDGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKR 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L+FSAT+ + I AER + V A + + Q Y+ E K L ++ Sbjct: 182 MLMFSATMPPE-ILKIAERFMRSYETVRAESAQLNTELTEQIYFEV-RREDKFEALSRII 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + ++VF R R V EL L+ G L G++ Q +R I + + + +L+ Sbjct: 240 DVEQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILI 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGID+ D++HV N+ MP+ +TY+HRIGRT RAG+ GTAI+ V ++ L + Sbjct: 300 ATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 R I+ + + R + + + S+ + A + ++ Sbjct: 360 QREAHTEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQE 401 >UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAU7_KANKD Length = 458 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 161/421 (38%), Positives = 242/421 (57%), Gaps = 4/421 (0%) Query: 1 MTVTT-FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYL 59 M+ T+ F E L L +A Q F P+ +Q AI P LDG DV+ SA TG+GKTAA+L Sbjct: 1 MSDTSIFQE--LHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFL 58 Query: 60 LPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 LP + +LL+ P + + R+LIL PTRELA Q+ HAR+L + T + I GG Y Sbjct: 59 LPIIHNLLENPSRHT-STRVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQ 117 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +F +N +I++AT GR+L++ +++ D +E L++DEAD+M +MGF D++ IAG + Sbjct: 118 QAIFRDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCK 177 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSATL+ I+ + L+++P + N + I Q+ ADDL HK L Sbjct: 178 SDRQTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLT 237 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL E ++IVF +E+V L +R I L G++ Q RN + + + ++ Sbjct: 238 QWLLTNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKI 297 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VL+A+DVAARGID+ D+ V NFDM + + Y+HRIGRTARAG G A+SL+ + L Sbjct: 298 KVLIASDVAARGIDVKDIDLVINFDMAHNAEDYIHRIGRTARAGETGKAVSLISHREWNL 357 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + + I + I EL + P + + + K+ KK +EK R +K+ Sbjct: 358 MVTIEKAISGSFQLTSIKELPANYKGPKKLKASGKAAGHKKKKDGAKKLTAREKKRFEKK 417 Query: 420 H 420 H Sbjct: 418 H 418 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 196/376 (52%), Gaps = 7/376 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLP 61 +T F EL L E L AL+ KGFT PT IQ IP L G D++G A TGTGKTAA+ LP Sbjct: 1 MTDFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++ + + + L+LTPTRELA+QV+D L + + + GG A + Sbjct: 61 IIE----TAVENAKRVQALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLK 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D+VV T GR++ ++K ++ +LDEAD M +MGF D+ I Sbjct: 117 ALKSGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTD 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 ++TLLFSAT+ + + A+ + D ++ + Q ++ D + + L Sbjct: 177 RRTLLFSATMPHE-VMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSD-RFEALCR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ +VF R R +A+ L E G + G++ Q +R E + R + V + Sbjct: 235 VVDAEPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTI 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGID+PD++HV NF +P+ T++HR GRT RAG++G AISL+ + L Sbjct: 295 LVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLM 354 Query: 362 KVGRYIEEPIKARVID 377 + + I + Sbjct: 355 FITKSSGIDITKAKLP 370 >UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPF9_9SPIO Length = 605 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 141/443 (31%), Positives = 223/443 (50%), Gaps = 6/443 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 FS LD LL+ L++ G+ T +Q +DG D+ + TGTGKTAAYL+ + Sbjct: 12 MNFSNFNLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLM 71 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q +L + P LIL PTRELA+QV + A +L K+T L A+ GGV Y E Sbjct: 72 QRMLAQGTESRRP--ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEAL 129 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW--R 181 D+++ T GR++ K + + V L++DEADRM DMGF D+ + Sbjct: 130 KNGVDLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEE 189 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSATL +++ A D E++ + +I+Q + + K +LL+ Sbjct: 190 RQTMLFSATLNT-WVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVA-ADQKMSLLLG 247 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L+ + +I+F ++ +A LR G +L G++ Q KR I G++ Sbjct: 248 ILRNEKPENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTC 307 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGIDI D++ V N+D+P + Y+HRIGRTARAG+ G A SL D L Sbjct: 308 LVATDVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLP 367 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + +YIE I + E + +++ +R + K + + ++ + Sbjct: 368 DIEKYIEAKIPVVIPGEEDFEKDRSADQYIRLDRDSADEERGGRFGRKPRPGEKSRREDK 427 Query: 422 DTKNIGKRRKPSGTGVPPQTTEE 444 D + K +P+ + ++ Sbjct: 428 DARRGTKTARPASRTADSKRKKK 450 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 145/402 (36%), Positives = 217/402 (53%), Gaps = 9/402 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F EL L E +L+ L D GF IQ A IP L GRDV+G A TG+GKTAA+ L Sbjct: 1 MTKFQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSM 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ + + + LI+ PTRELAMQ++D ++ K+T + +AT+ GG + Sbjct: 61 LQEI-----QPKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +IVVAT GRL+ ++K + + R V ++LDEAD MLDMGF DI I + Sbjct: 116 LERGVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDR 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 LFSAT+ + I +E L +P + + + I Q Y D + K L+ Sbjct: 176 VMSLFSATMPTE-ILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRD-KFKYLIDF 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +K P ++IVF + R ++A +L + + +EG+M Q +R +++ + G+ ++L Sbjct: 234 IK-PTKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADIL 292 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVA+RGID+P V V N+D+P Y HRIGRTARAG KG A++ V Sbjct: 293 VATDVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNL 352 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + R I+ PIK + +E+ + P + PS++ + Sbjct: 353 IKRQIKVPIKD-LNEEMGIEIAIPDPLKRQMPSRRYGGQSRS 393 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 613 e-174 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 604 e-171 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 603 e-171 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 601 e-170 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 601 e-170 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 600 e-170 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 600 e-170 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 600 e-170 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 598 e-169 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 598 e-169 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 597 e-169 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 595 e-168 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 595 e-168 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 594 e-168 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 594 e-168 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 594 e-168 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 594 e-168 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 593 e-168 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 593 e-168 UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammap... 593 e-168 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 592 e-167 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 591 e-167 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 588 e-166 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 588 e-166 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 588 e-166 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 588 e-166 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 585 e-166 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 585 e-165 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 584 e-165 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 584 e-165 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 584 e-165 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 583 e-165 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 582 e-165 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 582 e-165 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 582 e-164 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 581 e-164 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 581 e-164 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 581 e-164 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 581 e-164 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 580 e-164 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 579 e-164 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 579 e-163 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 578 e-163 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 578 e-163 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 578 e-163 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 578 e-163 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 577 e-163 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 577 e-163 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 577 e-163 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 577 e-163 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 576 e-163 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 576 e-163 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 576 e-163 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 576 e-163 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 576 e-163 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 576 e-163 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 576 e-163 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 574 e-162 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 574 e-162 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 573 e-162 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 573 e-162 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 572 e-162 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 572 e-162 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 571 e-161 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 571 e-161 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 571 e-161 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 571 e-161 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 571 e-161 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 571 e-161 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 571 e-161 UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 570 e-161 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 570 e-161 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 569 e-161 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 569 e-161 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 568 e-160 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 568 e-160 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 568 e-160 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 568 e-160 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 568 e-160 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 567 e-160 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 567 e-160 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 567 e-160 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 567 e-160 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 567 e-160 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 566 e-160 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 566 e-160 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 566 e-160 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 566 e-160 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 566 e-160 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 566 e-160 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 565 e-160 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 565 e-159 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 565 e-159 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 565 e-159 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 564 e-159 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 564 e-159 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 564 e-159 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 564 e-159 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 564 e-159 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 564 e-159 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 563 e-159 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 563 e-159 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 563 e-159 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 563 e-159 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 563 e-159 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 562 e-159 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 562 e-159 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 562 e-158 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 562 e-158 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 562 e-158 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 561 e-158 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 561 e-158 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 560 e-158 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 560 e-158 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 560 e-158 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 560 e-158 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 560 e-158 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 559 e-158 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 559 e-158 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 559 e-157 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 557 e-157 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 557 e-157 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 557 e-157 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 557 e-157 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 557 e-157 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 557 e-157 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 557 e-157 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 556 e-157 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 556 e-157 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 556 e-157 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 556 e-157 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 556 e-157 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 556 e-157 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 556 e-157 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 555 e-156 UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, puta... 555 e-156 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 555 e-156 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 555 e-156 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 554 e-156 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 554 e-156 UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 T... 554 e-156 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 554 e-156 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 554 e-156 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 554 e-156 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 554 e-156 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 554 e-156 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 554 e-156 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 554 e-156 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 554 e-156 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 554 e-156 UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 553 e-156 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 553 e-156 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 553 e-156 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 552 e-156 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 552 e-156 UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 552 e-155 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 552 e-155 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 551 e-155 UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabd... 551 e-155 UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI 551 e-155 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 551 e-155 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 551 e-155 UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Gl... 551 e-155 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 551 e-155 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 551 e-155 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 551 e-155 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 550 e-155 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 549 e-155 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 549 e-155 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 549 e-155 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 549 e-155 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 549 e-155 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 549 e-155 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 549 e-155 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 549 e-155 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 548 e-154 UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=... 548 e-154 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 548 e-154 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 548 e-154 UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase p... 548 e-154 UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME 548 e-154 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 548 e-154 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 548 e-154 UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collins... 547 e-154 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 547 e-154 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 547 e-154 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 547 e-154 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 547 e-154 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 547 e-154 UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME 547 e-154 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 547 e-154 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 547 e-154 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 547 e-154 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 547 e-154 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 546 e-154 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 546 e-154 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 546 e-154 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 546 e-154 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 546 e-154 UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/M... 546 e-154 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 546 e-154 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 546 e-154 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 545 e-153 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 545 e-153 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 544 e-153 UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, puta... 544 e-153 UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax... 544 e-153 UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=G... 544 e-153 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 544 e-153 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 544 e-153 UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Pr... 544 e-153 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 543 e-153 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 543 e-153 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 543 e-153 UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA 543 e-153 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 542 e-153 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 542 e-153 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 542 e-153 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 542 e-153 UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=... 542 e-152 UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=... 542 e-152 UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 542 e-152 UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax... 542 e-152 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 542 e-152 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 541 e-152 UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyos... 541 e-152 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 541 e-152 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 541 e-152 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 541 e-152 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 541 e-152 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 541 e-152 UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=... 540 e-152 UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizos... 540 e-152 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 540 e-152 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 540 e-152 UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoe... 540 e-152 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 540 e-152 UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza s... 540 e-152 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 540 e-152 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 540 e-152 UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 540 e-152 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 540 e-152 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 539 e-152 UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 T... 539 e-152 UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Ta... 539 e-152 UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=E... 539 e-152 UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary f... 539 e-152 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 539 e-151 UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-depend... 539 e-151 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 538 e-151 Sequences not found previously or not previously below threshold: >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 143/392 (36%), Positives = 225/392 (57%), Gaps = 7/392 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++++F L+ +L+A+ D GF P+ IQAA IP L+GRDV+G A TGTGKTAA+ +P Sbjct: 15 SMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++ + PR + ++LTPTRELA+QV+ R++AK+ + I GG + ++ Sbjct: 75 LVERVSTEPR-----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIR 129 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + IV+ T GR+L +I V ++LDEAD MLDMGF DIE I ET Sbjct: 130 ALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSD 189 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT + ++ A R + DP ++ N +I Q Y+ + +K L Sbjct: 190 RQTMLFSATFPNE-VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLE-RNKLDSLCR 247 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + I+F R + V +L L G L G++ Q +R+ +++ + + + Sbjct: 248 IVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIEL 307 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ DV+HV N+D+P+ ++Y+HRIGRT RAG++G AI+LV ++ LL Sbjct: 308 LVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLK 367 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 ++ R I++ I R + L +E K Sbjct: 368 QIEREIKQKITVREVPSLEDVAERQAEMWRSK 399 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 152/445 (34%), Positives = 235/445 (52%), Gaps = 7/445 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F++L L LL+A+ D G+T PT IQ AIP + G+DV+G A TGTGKTA + LP L Sbjct: 1 MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 64 QHLLDFPR----KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 + R LIL PTRELAMQV + + +KH L + GGV Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +IV+AT GRLL ++++++ + VE L+LDEADRMLDMGF DI+ I Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++Q+LLFSAT D I+ A+++L++P + + I + K LL Sbjct: 181 KQRQSLLFSATF-SDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSG-MKRNLL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 HLL+ T+++VFV + LA++L +GI+ + G+ Q +R + ++ G++ Sbjct: 239 AHLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKL 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARG+DI ++ V NF++P + + Y+HRIGRT RAG G AISLV + + Sbjct: 299 RVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHW 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L ++ + I+ I + P G ++ A A+ + + ++R Sbjct: 359 LSEIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRER 418 Query: 420 HRDTKNIGKRRKPSGTGVPPQTTEE 444 + ++ RR+P+ + Sbjct: 419 GVE-RSAEARREPAREREGLRAGPR 442 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 122/416 (29%), Positives = 204/416 (49%), Gaps = 13/416 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF E L + +L+ + GF +PT IQ P AL GRD++G A TG+GKT A+++P Sbjct: 210 PIQTFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIP 269 Query: 62 ALQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P +K P +LIL PTRELA+Q+ + + + + GG A Sbjct: 270 AVIHINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSRITNTCVYGGTQRGPQA 329 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I +AT GRL+ +++ + + V L++DEADRMLDMGF + I + R Sbjct: 330 RALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRP 389 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTL++SAT + +Q A + +PV V+ S I Q+ + K L Sbjct: 390 DRQTLMWSATWPKE-VQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVV-ENNVKPERL 447 Query: 240 VHLLKQPE-------ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 + L++ ++++F + ++ LR G + G+ Q +R+ + Sbjct: 448 LALMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLN 507 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 + GR +++ATDVA+RG+D+ DV +V N+D P + + Y+HRIGRT RAG G A S Sbjct: 508 QFKTGRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFF 567 Query: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 L ++ + E ++ + E +++ + K + Sbjct: 568 SPDKGKLARQLVNCLREANQS--VPEALETIAFANDRSNSGGKGRGKGNYGGKGRG 621 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 175/438 (39%), Positives = 244/438 (55%), Gaps = 1/438 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L+ ++L A+++ G+T PT IQA AIP ++G D++ SA TGTGKTA ++LPAL Sbjct: 1 MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L +S PRIL+LTPTRELA QV++ AR+ K +I GG+ Y ++ Sbjct: 61 NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 S+ DI+VAT GRLL +++ D ++ LILDEADRMLDMGF D+E I + +Q Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSATL+GD I A+++L++P V + I Q + DD+ HK LL HLL Sbjct: 181 TLLFSATLDGD-IARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 PE ++I+F + LA L AG L G+M QG RN + +L G V VLV Sbjct: 240 IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGID+ ++HV N+D+P+ + Y+HRIGRT RA G AIS D LL K+ Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 +Y ++A VI+ PK + +G A K+++ + Sbjct: 360 EQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGGFKSRDDRGGFGGRDGNRG 419 Query: 424 KNIGKRRKPSGTGVPPQT 441 N G R S + Sbjct: 420 DNRGGSRHESRGDNRSER 437 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 201/388 (51%), Gaps = 8/388 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 VTTF E +L+ ++ GF PT IQ A P A+ GRD++G + TG+GKT +Y LP Sbjct: 120 PVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLP 179 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P G P +L+L PTRELA+Q+ + K + + + GGV Sbjct: 180 AIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQI 239 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I +AT GRLL + + R V L+LDEADRMLDMGF I I + R Sbjct: 240 RDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTAL- 238 +QT++FSAT + +Q A L D ++V+ I Q D+ + + L Sbjct: 300 DRQTVMFSATWPKE-VQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLG 358 Query: 239 --LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 + +LK + + ++F + ++ +LR+ G + G+ Q +R+ + Sbjct: 359 KDIEEVLKDRD-NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT 417 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G+ ++VATDVA+RGID+ ++HVFN+D P + + Y+HRIGRT RAG KGTA + + + Sbjct: 418 GKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDN 477 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTR 384 ++ + E K + +L R Sbjct: 478 AKQARELVSILSEA-KQDIDPKLEEMAR 504 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 145/441 (32%), Positives = 220/441 (49%), Gaps = 20/441 (4%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V +FSE + ++ + ++GF PT IQA + P L GRDV+G A TG+GKT AY+LP Sbjct: 77 PVLSFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLP 136 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++ H+ + P + G P LIL PTRELA QV + + ++ A I GG Sbjct: 137 SIIHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQL 196 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S +I VAT GRLL +++ + L+LDEADRMLDMGF I+ I G + Sbjct: 197 RELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKC 256 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALL 239 +QT+++SAT + I+ A L D V+++ I Q + E K L Sbjct: 257 PRQTVMWSATWPKE-IRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEE-KEDKL 314 Query: 240 VHLLK---QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 LL + + ++IVFV +++ L+ L +G + G+ Q +R+ + Sbjct: 315 CKLLSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRS 374 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 GR+ VL+ATDVAARG+DI DV V N+D P + + Y+HRIGRTAR+G+ GTA + A + Sbjct: 375 GRIPVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASN 434 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 + + E + D + + A+ A+K + K + + R Sbjct: 435 IRQSPNLIALLREANQPINPDLI-------------QLGDAARAEMAQKHRGKMRGRDRF 481 Query: 417 KKRHRDTKNIGKRRKPSGTGV 437 R R+ N K +G Sbjct: 482 YNRDRNASNRYPYAKSKLSGS 502 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 136/440 (30%), Positives = 209/440 (47%), Gaps = 8/440 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + +++ L D+ FT PT IQ P AL GRD++G A TG+GKT AYLLPA+ H Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + P + G P L+L PTRELA QV A + K + L I GG Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +I +AT GRL+ +++ + R L+LDEADRMLDMGF I I + R +QT Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRA--DDLEHKTALLVH 241 L++SAT + ++ AE L D +++ I Q + +HK L+ Sbjct: 274 LMWSATWPKE-VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + + ++I+FV + R +L +R G + G+ Q +R+ + G+ + Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVA+RG+D+ DV V N+D P S + Y+HRIGRTAR+ KGTA + + Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR 452 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK---AKEKEKPRVKK 418 ++ + +EE +A ++ G S+ A E ++ Sbjct: 453 ELIKVLEEANQAINPKLMQLVDHRGGGGGGGGRSRYRTTSSANNPNLMYQDECDRRLRGV 512 Query: 419 RHRDTKNIGKRRKPSGTGVP 438 + ++ R S T Sbjct: 513 KDGGRRDSASYRDRSETDRA 532 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 162/427 (37%), Positives = 234/427 (54%), Gaps = 7/427 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 FSE L + LL A++ G+ PT +Q +IP L+GRD++G A TGTGKTAA+ LP L Sbjct: 63 KFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLH 122 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L R + R L+LTPTRELA+Q+ D+ ++ ++ HL + GG Sbjct: 123 KLTLLKRPR---VRALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALR 179 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI+VAT GRLL ++ ++ D +VE L+LDEADRMLDMGF D+ I T ++QT Sbjct: 180 RGADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQT 239 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 L+FSAT+E + ++ A+R+L+DPV+V P + Q E K ++ LL Sbjct: 240 LMFSATMEKE-VRQLADRMLKDPVQVQVTPENEAADTVEQKLIF-SSREDKREIIASLLT 297 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +IVF R + +L+ L+ GI + + G+ QG+R +A+ R G+V V+VA Sbjct: 298 DEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVA 357 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+DIP +SHVFN+D+P Y+HRIGRT RAG G AI+L + L +V Sbjct: 358 TDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVE 417 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 +E+PI P R + + G+ R+ K K K R+ + Sbjct: 418 ELLEKPIPELQTQWSLPLERKARKGKGGRTRHGRSGYRSG--GQKNAGKSGHKTGSRNRQ 475 Query: 425 NIGKRRK 431 RR+ Sbjct: 476 GHADRRQ 482 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 137/434 (31%), Positives = 211/434 (48%), Gaps = 8/434 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +TTF E + +L ++ +GF +PT IQ P AL GRD++G A TG+GKT +Y LP Sbjct: 111 PITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLP 170 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + H+ P G P +L+L PTRELA+Q+ + + + + GGV Sbjct: 171 GIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S +IV+AT GRL+ ++ + + V L+LDEADRMLDMGF I I + R Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALL 239 +QTL++SAT + ++ A L DP++V I Q D E + L Sbjct: 291 DRQTLMWSATWPKE-VKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLN 349 Query: 240 VHL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 +L Q ++++F + ++ +LRE G + G+ Q +R+ ++ G Sbjct: 350 KYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNG 409 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 R ++VATDVAARGID+ +++V N+DMP + + Y+HRIGRT RAG GTAIS + Sbjct: 410 RSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469 Query: 358 LL---LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 L L + R + I ++ R + G + R Sbjct: 470 GLGAKLISIMREANQNIPPELLKYDRRSYGGGHPRYGGGRGGRGGYGRRGGYGGGRGGYG 529 Query: 415 RVKKRHRDTKNIGK 428 ++R N G+ Sbjct: 530 GNRQRDGGWGNRGR 543 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 139/453 (30%), Positives = 219/453 (48%), Gaps = 17/453 (3%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E + ++ ++ +GF +PTAIQA P A+ GRD++G A TG+GKT AY+LPA+ H Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + + PR + G P L+L PTRELA Q+ A E +TH+ I GG A Sbjct: 219 INNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLE 278 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +IV+AT GRL+ +++ + L+LDEADRMLDMGF I I + R +Q Sbjct: 279 RGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQV 338 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVHL- 242 L++SAT + ++ AE L + ++V+ + I Q D+ E L+ L Sbjct: 339 LMWSATWPKE-VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 397 Query: 243 -LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + T++I+FV ++RV E+ + G C + G+ Q +R+ + GR ++ Sbjct: 398 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 457 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ DV V N+D P + + Y+HRIGRT R+ GTA +L + Sbjct: 458 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR------ 415 + + + E + + K+ G + + + Sbjct: 518 DLIQVLREANQTINPKLMNMAMNGGYNKRGGGMGGGYRGGNGYQGRNPQMGGGYNGGNNY 577 Query: 416 ------VKKRHRDTKNIGKRRKPSGTGVPPQTT 442 +R++ N G P P+T+ Sbjct: 578 RNNNGPGATMNRNSFNGGSAGGPPRFDQKPRTS 610 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 137/392 (34%), Positives = 212/392 (54%), Gaps = 8/392 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T+F +L LD +L AL++ GF P+ IQ AIP AL+G D++G A TGTGKTAA+ +P Sbjct: 17 EITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP 76 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 +Q + +K + L+++PTREL +QV+D ++ K + + + GG Sbjct: 77 IIQKI----NEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIR 132 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +V+ T GRLL +I+ D V L+LDEAD MLDMGF D+E+I Sbjct: 133 SLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPE 192 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ I +++ + P V+ + I Q+YY + K L Sbjct: 193 RQTMLFSATMPRP-ILSISKKYMRAPKVVAIHKEVVTAPTIDQYYY---ETRDKVDGLCR 248 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L + + I+F R ++ V EL L G L G++ Q +R+ +K+ G+V++ Sbjct: 249 ILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDI 308 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI +++HV NFD+P ++Y+HRIGRT RAG G A++ + + L Sbjct: 309 LVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLK 368 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + R I+ I + E+ K Sbjct: 369 LIERSIKTKIIRGTLPTDASVLERQREQIVSK 400 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 159/439 (36%), Positives = 240/439 (54%), Gaps = 5/439 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F+ L L E +L+A++ +G+ +P+ IQ A+P L G+DV+ +A TGTGKTA + LP L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + L PR + R L+LTPTRELA QV+ + + L + GGV + Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D++VAT GRLL + +E L+LDEADRMLDMGF +DI I ++Q Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT D I+ A+ L+ +PVE+S +P+ + Q Y D + K +L L+ Sbjct: 181 NLLFSATF-SDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDK-KKKAPMLAKLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K + + +VF + + ++LA +L E I + + G QG R +A++ G+V VLV Sbjct: 239 KDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGIDIP + V NFD+P + Y+HRIGRT RAG G AISLV A + L + Sbjct: 299 ATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R I++ ++ R ++ P + P + +P K K+ + ++ + Sbjct: 359 ERLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAG 418 Query: 424 KNIGKRRKPSGTGVPPQTT 442 KN +R +G G P+ Sbjct: 419 KN---KRHVAGNGSAPKRK 434 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 135/383 (35%), Positives = 215/383 (56%), Gaps = 7/383 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F + ++ + +A++D GF P+ IQ IP L G DV+G A TGTGKTAA+ +P Sbjct: 1 MMKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L+ + + LILTPTRELA+QV+ ++L+K I I GG + + + Sbjct: 61 LEKVTSD-----RQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR+L ++ + R+V TLILDEAD MLDMGF +DIE I + + Sbjct: 116 LKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNR 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I+ + + + +P +V+ + I+Q Y++ + ++K L + Sbjct: 176 QTMLFSATMPPP-IRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLE-KNKLDSLCRV 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + I+F R ++ V EL L+ G L G++ Q +R+ +K+ + + L Sbjct: 234 IDSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFL 293 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARGID+ +VSHV N+D+P+ ++Y+HRIGRT RAGR+G A++LV + L Sbjct: 294 IATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRS 353 Query: 363 VGRYIEEPIKARVIDELRPKTRA 385 + I+ I ++ I + Sbjct: 354 IEAEIKMTIPSQRIPSVEEVVEK 376 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 155/437 (35%), Positives = 229/437 (52%), Gaps = 6/437 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 TF++L L +L A+ D+G+ PT IQA IP L G+DV+ SA TGTGKTA + LP Sbjct: 3 NDVTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLP 62 Query: 62 ALQHLLDFPR----KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 L L + P R LI+ PTRELAMQ+ + R+ K+ L A + GG+ Sbjct: 63 LLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIE 122 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +I+VAT GRLL ++++ + E L+LDEADRMLDMGF DI+ + Sbjct: 123 PQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMAL 182 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 ++Q+L+FSAT G+ I+ A+ LL+ PV + A + I + + K A Sbjct: 183 LSPQRQSLMFSATFSGE-IRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKP-DSKFA 240 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL+HL++Q ++++FV+ + LA L I+ + G+ Q +R +A+ G Sbjct: 241 LLLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHG 300 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 V +LVATDVAARGIDI +SHV N+++P + + Y+HRIGRT RAG KG AISLV H+ Sbjct: 301 DVQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEK 360 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 LL + + + ++ I + A S ++ K EK R + Sbjct: 361 ELLANIEKLLNAKLETEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKSRSE 420 Query: 418 KRHRDTKNIGKRRKPSG 434 K + + G Sbjct: 421 KHRKLPSSQKYSGSRRG 437 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 152/443 (34%), Positives = 229/443 (51%), Gaps = 4/443 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L +L A+ ++G+ PT IQ AIP L+GRD++ SA TGTGKTA + LP L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 64 QH-LLDFPRKKSGPP-RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 QH + P K P R LILTPTRELA Q+ ++ R+ +K+ ++ + GGV+ Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRLL + VE L+LDEADRMLDMGF DI + + + Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q LLFSAT D I+ AE+LL +P+E+ ++ Q + D + K LL H Sbjct: 181 RQNLLFSATF-SDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDK-KRKRELLSH 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + + +VF R + + LA L + GI + + G QG R A+ G + V Sbjct: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARG+DI ++ HV N+++P + Y+HRIGRT RA G A+SLV +H LL Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + +++ I I P +E ++ R + +++ R + + Sbjct: 359 DIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAK 418 Query: 422 DTKNIGKRRKPSGTGVPPQTTEE 444 + G E+ Sbjct: 419 SASAKPAEKPSRRLGDAKPAGEQ 441 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 134/427 (31%), Positives = 207/427 (48%), Gaps = 5/427 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V F E ++++ + + FT PTAIQA P AL G D++G A TG+GKT +YLLP Sbjct: 92 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLP 151 Query: 62 ALQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P ++ P L+L PTRELA QV A E + L I GG Sbjct: 152 AIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 211 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I +AT GRL+ +++ + R L+LDEADRMLDMGF I I + R Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 271 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEH--KTA 237 +QTL++SAT + ++ AE L+D + ++ I Q D+E K Sbjct: 272 DRQTLMWSATWPKE-VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLI 330 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L+ + + ++IVFV + R EL +R G + G+ Q +R+ + G Sbjct: 331 RLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHG 390 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + +L+ATDVA+RG+D+ DV V N+D P S + Y+HRIGRTAR+ + GTA + ++ Sbjct: 391 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 + + + E +A L+ S + G+ K + + Sbjct: 451 KQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRD 510 Query: 418 KRHRDTK 424 + + D Sbjct: 511 RENYDRG 517 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 162/439 (36%), Positives = 232/439 (52%), Gaps = 6/439 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS L L + +A+ ++G+ P+ IQA AIP L G+DV+ +A TGTGKTA + LP L Sbjct: 1 MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + L + K+G R L+LTPTRELA QVS+ K+ L A + GGV + Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D++VAT GRLL +++ +E L+LDEADRMLDMGF +DI+ I ++Q Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L+FSAT D I++ A+ L+ PVE+S P + QW D K+ALL+ L+ Sbjct: 181 NLMFSATF-SDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKN-QKSALLIQLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 KQ + + +VF R + + LA L +A I+ + G QG R +A+ G V VLV Sbjct: 239 KQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARG+DI + V NFD+P + Y+HRIGRT RAG G A+SLV + + LL + Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R I ++ + I+ P P + A ++K + KP R Sbjct: 359 ERLINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTP----RTG 414 Query: 424 KNIGKRRKPSGTGVPPQTT 442 R+ P Q Sbjct: 415 TGRDGRKTPDSIDGSAQQK 433 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 142/410 (34%), Positives = 215/410 (52%), Gaps = 6/410 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF EL L + +++A++ GF T IQA IP +L +DV+G A TGTGKTAA+ +P Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + K+ + L++ PTRELA+QVS+ ++ + + I GG Sbjct: 61 VEKV----NVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++ ++V T GR++ +I V T++LDEAD ML+MGF +DIE I + Sbjct: 117 LKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ D I+ AER + +P V I Q+Y + + K +L L Sbjct: 177 QTLLFSATMP-DPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHE-KKKFDILTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +IVF R + RV ELA L G + G++ Q KR +++ EG + +L Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+ G A++ V + L Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 + R + ++ L K V + K +E Sbjct: 355 IERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEE 404 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 142/405 (35%), Positives = 217/405 (53%), Gaps = 6/405 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F E+EL + +A+ D GF P+ IQA AIP + G+D++G A TGTGKTA + +P Sbjct: 18 VKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMA 77 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + L + G + L+L PTRELA+QV+ ++ + L + GG + Sbjct: 78 ETL----NPRDGRVQALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRAL 133 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +V+ T GR+L ++ + V ++LDEAD MLDMGF +DIE I ET +Q Sbjct: 134 RYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQ 193 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ G IQ A + +++P V+ + I Q YY + K L +L Sbjct: 194 TLLFSATMPGP-IQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKES-QKVDALCRIL 251 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 E SI+F R + V EL L G L G++ Q +R+ +K+ +G+ +L+ Sbjct: 252 DMEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLI 311 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ +V+HV N+D+P+ ++Y+HRIGRT RAGRKG AI+L+ ++ L + Sbjct: 312 ATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLI 371 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 R + I+ R + + E K K + + K+ Sbjct: 372 ERVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKS 416 >UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammaproteobacteria RepID=SRMB_ECOLI Length = 444 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL Sbjct: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA Sbjct: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH Sbjct: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 Query: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 RDTKNIGKRRKPSGTGVPPQTTEE Sbjct: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 158/451 (35%), Positives = 226/451 (50%), Gaps = 10/451 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T+ +F +L L E LL+AL ++G+T PT IQ AIP LD RD+LG A TGTGKTAA+ + Sbjct: 24 LTILSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAI 83 Query: 61 PALQHL----LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 P LQ + RK + LILTPTRELA+Q+ + K L I GGV+ Sbjct: 84 PLLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQ 143 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 E + DI++AT GRLL I + R ++ +LDEADRMLDMGF D++ + Sbjct: 144 HPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIV 203 Query: 177 ETRWRKQTLLFSATLEGDAIQDFAERLL-EDPVEVSANPSTRERKKIHQWYYRADDLEHK 235 + ++Q+L FSAT+ + IQ A+ +L +P +V P + + I Q Y + + K Sbjct: 204 KLPEQRQSLFFSATMPPE-IQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKND-K 261 Query: 236 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 LL+H+LK +VF R + + L +A I + G Q R A+ Sbjct: 262 RNLLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFK 321 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 + VLVATD+AARGIDI +++HV N+++P +TY+HRIGRT RAG G AIS E Sbjct: 322 SQQTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPE 381 Query: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + L + + I I P +K + KK + Sbjct: 382 EKAFLKDILKLISREIPVETEHPFHNGDSMALPAPKPAPQQKPKQQHPRDKKGGFSRNRQ 441 Query: 416 VKKRHRDTKNIGKRRKP---SGTGVPPQTTE 443 + RD + KP G PQ + Sbjct: 442 GVVQSRDARPGAGAGKPNSGKPNGGRPQGGK 472 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 151/444 (34%), Positives = 227/444 (51%), Gaps = 7/444 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF + L +L A+ ++G+T PT IQA AIP L GRDV+G+A TGTGKTA++ LP +Q Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161 Query: 65 HLLDFPR----KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LL P R LILTPTRELA QV+ + AKHT L A + GGV Sbjct: 162 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 221 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I++AT GRLL +++++ + V+ L+LDEADRMLDMGF D++ I Sbjct: 222 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 281 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLFSAT I+ A L +P + S + Q Y + + K A +V Sbjct: 282 ERQTLLFSATF-SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGD-KQAAVV 339 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L++ + IVF + LA + GI + G+ Q +R +A+ G + Sbjct: 340 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 LVATDVAARG+DI ++ V NFD+P + + Y+HRIGRT RAG G A+SL ++ L Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I+ + ++ P+ R + + + +++ E+ +R Sbjct: 460 ADIEKLIKRTLSLETLELDLPRHRHDERGGRRERERDERRGASAGRRSAGGERAHHPRRE 519 Query: 421 RDTKNIGKRR-KPSGTGVPPQTTE 443 + + PS + P+ + Sbjct: 520 APIDDFFLKPYVPSSSANQPEEAK 543 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 146/402 (36%), Positives = 209/402 (51%), Gaps = 7/402 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF+E + E LL+A+ D GF PT IQA AIP LDG+DV G A TGTGKTAA+ +P + Sbjct: 5 KTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPII 64 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 + L + + L+L+PTRELA+Q ++ L K+ L++ I GG Sbjct: 65 ERL----DPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +V+ T GR++ +IK +V ILDEAD+MLDMGF +DIE I +T + Sbjct: 121 LKGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I D R DP V +I Q Y + + K L Sbjct: 181 QTILFSATMPQP-ILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERD-KLEALCRT 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++VF + V +L + ++ G L G+M Q +R+ + R G ++VL Sbjct: 239 LDMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARGID+ DV VFN+D+P+ + Y+HRIGRTARAGR G +++ V + L Sbjct: 299 IATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRD 358 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + RY + I + L + K + A E Sbjct: 359 IQRYAKIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLE 400 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 202/378 (53%), Gaps = 3/378 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + F++ L++ + GF PT IQ+ A P AL GRD++G A TG+GKT A+LLP Sbjct: 382 PIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLP 441 Query: 62 ALQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++ H+ P ++ P +L+L PTRELA+Q+ + + + + + GG + Sbjct: 442 SIVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQV 501 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +IV+AT GRL+ ++ + R V L+LDEADRMLDMGF I I + R Sbjct: 502 AALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 561 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE-RKKIHQWYYRADDLEHKTALL 239 +QTL+FSAT + +Q A L D ++V + + Q D E K +L Sbjct: 562 DRQTLMFSATWPKE-VQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERML 620 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L + IVF R+ V +L L+ +G + + G Q +R+ + + G V Sbjct: 621 SFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMV 680 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +++ATDVA+RG+DI D+ +V N+D P + + Y+HRIGRTARAG G + SL+ + L Sbjct: 681 PIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARL 740 Query: 360 LGKVGRYIEEPIKARVID 377 ++ + + E + I+ Sbjct: 741 ANELIKVLTEAKQKIPIE 758 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 132/383 (34%), Positives = 203/383 (53%), Gaps = 5/383 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 VT F + + + +++ L + F PTAIQA P AL GRD++G A TG+GKT AYLLP Sbjct: 93 PVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLP 152 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P + G P L+L PTRELA QV A + K + + + GG Sbjct: 153 AIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQI 212 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I +AT GRL+ +++ + R L+LDEADRMLDMGF I I + R Sbjct: 213 RDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 272 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRA--DDLEHKTA 237 +QTL++SAT + ++ AE L+D V+++ I Q ++ ++K Sbjct: 273 DRQTLMWSATWPKE-VRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLI 331 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L+ + + ++I+FV ++R EL +R G + G+ Q +R+ + G Sbjct: 332 QLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSG 391 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + +L+ATDVA+RG+D+ DV V N+D P S + Y+HRIGRTAR+ KGTA + + Sbjct: 392 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL 451 Query: 358 LLLGKVGRYIEEPIKARVIDELR 380 + R +EE +A L+ Sbjct: 452 RQARDLVRVLEEARQAINPKLLQ 474 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 149/410 (36%), Positives = 217/410 (52%), Gaps = 6/410 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF EL L +SLL++++ GF T IQA IP AL G+D++G A TGTGKTAA+ LP Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + + +++ PTRELA+QV + ++ KH + I I GG Sbjct: 61 LDKVDTHKES----VQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++ I+V T GR+L +I + + VET++LDEAD ML+MGF +DIE I + Sbjct: 117 LKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ D I+ AER + +P + I Q+Y + + K +L L Sbjct: 177 QTLLFSATMP-DPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +IVF R + RV EL+ L G + G++ Q KR +++ EG + VL Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+KG A+ V + L Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 + R + + L K + + K +E Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEE 404 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 585 bits (1510), Expect = e-166, Method: Composition-based stats. Identities = 158/435 (36%), Positives = 229/435 (52%), Gaps = 6/435 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF +L+L +L A+ D+G+ PT IQA IPP L G+DV+ SA TGTGKTA + LP Sbjct: 3 SDVTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLP 62 Query: 62 ALQHLLDFPR----KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 L HL P R LI+ PTRELAMQ+ + R+ K+ L + GGV Sbjct: 63 LLHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIE 122 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +I+VAT GRLL ++ + + E L+LDEADRMLDMGF DI+ + Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMAL 182 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 ++Q+L+FSAT D I+ A+ LL+ PV + + I +R E K A Sbjct: 183 LPSQRQSLMFSATF-SDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKP-ESKFA 240 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL+HL+KQ + +++VFV+ + +LA L I + G+ Q +R +A+ G Sbjct: 241 LLLHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHG 300 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 V +LVATDVAARGIDI +SHV N+++P + + Y+HRIGRT RAG KG AISLV H+ Sbjct: 301 DVQILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHET 360 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 LL + + + ++ I + S +A+R+ K+ + K Sbjct: 361 ELLTSIEKLLNTKLEIEQIAGFDAELFVRSLPDRKNRVSADIARRSNKQAEVANGEKTRK 420 Query: 418 KRHRDTKNIGKRRKP 432 + + P Sbjct: 421 YSGSRRSALQNHKDP 435 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 199/379 (52%), Gaps = 5/379 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V TF E + +L ++ +GF RPTAIQ+ P AL GRDV+G A TG+GKT Y LP Sbjct: 135 PVETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP 194 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P G P +LIL PTRELA+Q+ + K + + + GGV Sbjct: 195 AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S ++ +AT GRL+ ++ + R V L+LDEADRMLDMGF I I + R Sbjct: 255 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 314 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALL 239 +QT ++SAT + ++ A L D ++V+ +I Q D E + ++ Sbjct: 315 DRQTCMWSATWPKE-VRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 373 Query: 240 VHL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 HL + + A + ++F + E+ +LR+ G + G+ Q +R+ + G Sbjct: 374 KHLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 433 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + ++VATDVA+RGID+ D++HV N+D P + + Y+HRIGRT RAG KGTAI+ + Sbjct: 434 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNS 493 Query: 358 LLLGKVGRYIEEPIKARVI 376 + + E + Sbjct: 494 KQARDLVTILTEAKQQIDP 512 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 124/422 (29%), Positives = 196/422 (46%), Gaps = 7/422 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T+F L++AL GFT PTAIQ P AL G D++G A TG+GKT +LLP Sbjct: 166 PITSFVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLP 225 Query: 62 ALQHLLDFPRKK-SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P + P L+L PTREL Q+ + A + L I GGV Sbjct: 226 AMIHIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQ 285 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I +A GRL+ ++E + V L+LDEADRMLDMGF I + + R Sbjct: 286 ASIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRP 345 Query: 181 RKQTLLFSATLEGDAIQDFAERLLED-PVEVSANPST--RERKKIHQWYYRADDLEHKTA 237 +QTLL+SAT + +Q A L ++ P+ ++ + I Q+ ++ E K Sbjct: 346 DRQTLLWSATWPKE-VQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAK 404 Query: 238 LLVHL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295 L + L + A + ++F + L LR G + G+ Q +R + Sbjct: 405 LKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFR 464 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 G +++ATDVAARG+DI D++ V NFD P + Y+HRIGRT RAG G ++S Sbjct: 465 TGASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPD 524 Query: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + + + + ++E + + + + ++ + + Sbjct: 525 KYRMASDLIKVLKEAKQRVPPELFKLSPQNKRMHPRNTGFRRNNPNSLPLGGSNRAYRDL 584 Query: 416 VK 417 + Sbjct: 585 QR 586 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 164/403 (40%), Positives = 227/403 (56%), Gaps = 6/403 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F +L L E L+ AL +T PTAIQ AIPPA+ GRD+ G A TGTGKTAA+ LP L Sbjct: 1 MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60 Query: 64 QHLLDFPRK---KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L+ PR+ + PR L+L+PTRELA Q+ D R +H + TI GGV+ + Sbjct: 61 DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQV 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + QD+++AT GRL +++ + +E +LDEADRMLDMGF DI I + Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +KQTLLFSAT+ + IQ A +LL DPVE++ P I Q Y +HK LL Sbjct: 181 QKQTLLFSATMPPE-IQKLASQLLHDPVEINIEPERATADGITQSLYYV-PTKHKPELLA 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +LK+ E TR++VFVR + ++ A L + G+ + G Q R + G + Sbjct: 239 SVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQ 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ VSHV N+D+P +TY+HRIGRT RAG+ G AIS + LL Sbjct: 299 VLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLL 358 Query: 361 GKVGRYIEEPIKAR-VIDELRPKTRAPSEKQTGKPSKKVLAKR 402 V R + + I + + P A ++ G K+ Sbjct: 359 RDVQRILGKKIPVENEMPDGIPGLPANIDRDGGAKRAPWGNKK 401 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 176/446 (39%), Positives = 243/446 (54%), Gaps = 8/446 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FSEL LD +L+++ G+ T +Q AIP AL G D+L S+ TG+GKTAA+LLP++ Sbjct: 1 MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 Q LL P KS PR+L+LTPTRELA+QV A K A + GG Y + Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 S+ D+VVAT GRL+ +++ D +E L+LDEADRMLDMGF DI+ IA + Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATL+G + + A L D + + KI Q AD+++HK LL L Sbjct: 181 QTLLFSATLDG-VVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDAL 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ E ++IVF + E+++ L E+G + L G+M QG+RN A++RL EGR VL Sbjct: 240 LRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ +SHV NFD+PR + Y+HRIGRT RAGR G A+S + L+ Sbjct: 300 VATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKN 359 Query: 363 VGRYIEEPIKARVIDELRPKTRAPS------EKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 + RY I+ + L P R + + P + + R Sbjct: 360 IERYTGNRIEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKRSFGDRSEPRSYGDRP 419 Query: 417 KKRHRDTKNIGKRRKPSGTGVPPQTT 442 + RD ++ G R P Sbjct: 420 RGDSRDNRDRGYRGDARRNDGAPARR 445 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 128/407 (31%), Positives = 199/407 (48%), Gaps = 4/407 (0%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E + ++A+ GF PT IQ+ P AL GRD++G A TG+GKT +YLLP L H Sbjct: 253 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVH 312 Query: 66 LLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + PR + G P +LIL PTRELA+Q+ + + ++ I GG Sbjct: 313 VGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLR 372 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +IV+AT GRL+ ++ + + R V L+LDEADRMLDMGF I I + R +QT Sbjct: 373 RGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQT 432 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L +SAT + ++ A + L++P +V P + I Q + E L L Sbjct: 433 LYWSATWPRE-VESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLS 491 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +R ++F + ++ ++ LR G + G+ Q +R+ + G+ ++ Sbjct: 492 DLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMA 551 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ D+ V NFD P + + Y+HRIGRT RAG GTA + + + Sbjct: 552 ATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNL 611 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKE 410 + + E V L ++ S G + + + Sbjct: 612 VKILREA-GQVVNPALESMAKSASSMGGGNFRSRGRGGFGNRSGSNS 657 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 136/404 (33%), Positives = 221/404 (54%), Gaps = 6/404 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++ L + +L+A+ + GF P+ IQ AIP L+ D++G A TGTGKTA++ +P Sbjct: 2 IENFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPI 61 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + K S + ++L PTREL++QV++ +LAK+ + + I GG Sbjct: 62 VEKV----NKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRS 117 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++V T GR++ +IK + ++T +LDEAD M DMGF +DIE I G + + Sbjct: 118 LKMGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYER 177 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT FSAT++ + + DFA R +P + P K+ Q YY A K +L + Sbjct: 178 QTTFFSATMDHE-MMDFAARYQSEPRLIKVVPKELTVPKVTQ-YYFALKHNMKLEILSRI 235 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++VF ++ V +L L+ G L G++ Q +R+ + + +++L Sbjct: 236 LDVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDIL 295 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ DV V N+DMP+ + Y+HRIGRTARAGR+GTAIS V + L + Sbjct: 296 VATDVAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQ 355 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 + +Y + I+ R + L+ + E+ +++ K+ Sbjct: 356 IQKYTKTKIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKE 399 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 148/403 (36%), Positives = 221/403 (54%), Gaps = 9/403 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+ L L ES+++A+ D GFT+P+ IQ +IP L G D++G A TGTGKTAAY L Sbjct: 1 MNDNQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P + + D + LIL PTRELA+QV++ + L+K+ + + GG + Sbjct: 61 PIITKMSDN-----RGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQI 115 Query: 121 EVFSEN-QDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DIVV T GR+L +K + ++E L+LDEAD ML+MGF DI+ I T Sbjct: 116 RALRKGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +QTLLFSAT+ D I A++ ++ D VS S+ KI Q Y+ ++ +H+ Sbjct: 176 SERQTLLFSATMP-DPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINN-KHRLEA 233 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L LL + +I+F R + V EL L+ G + G+M Q R + + EG Sbjct: 234 LCRLLDLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGT 293 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +N+L+ATDVAARGID+ V+HVFN+D+P+ ++Y+HRIGRT RA + GTA SLV D Sbjct: 294 LNLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFS 353 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 +L ++ + I + + + + + A Sbjct: 354 MLKQIQNVTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAG 396 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 143/400 (35%), Positives = 219/400 (54%), Gaps = 7/400 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L E LL LQ+ G+ P+ IQAA IP L+ RDVLG A TGTGKTA++ LP L Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + K P+ L+L PTRELA+QV++ + A + + I GG +Y Sbjct: 69 I----DIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALR 124 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++++ + D ++T++LDEAD ML MGF D+E I +T +QT Sbjct: 125 RGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQT 184 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ A L DP ++ T I Q Y+ + K L +L+ Sbjct: 185 ALFSATMPS-AIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGM-QKLDALTRILE 242 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + ELA+ L+ G + + G++ Q +R I++L +G++++LVA Sbjct: 243 AENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ +SHV N+D+P ++Y HRIGRT RAGR G AI + + LL + Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 R +PI + + + + ++ + A E Sbjct: 363 RATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGLE 402 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 136/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ F + L LL+ + +KGF +PT IQ +IP A+ G D++G A TGTGKTA++ + Sbjct: 1 MSFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L ++ K + L+L PTRELA+QV++ L++ + + I GG + Sbjct: 61 PILNRVI-----KGEGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQL 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N +I+V T GRL+ ++ ++ ++LDEAD MLDMGF DI+ I + Sbjct: 116 RSLRRNPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPR 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT LFSATL + +++ + ++ P + R +I Q+YY+ + K L Sbjct: 176 ERQTFLFSATLPDE-VRELGTKFMKQPEIILIESPERTVPEIEQYYYQVN-SRRKIETLC 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + S++F R + ELA L G N L G+M Q +R+ + +G Sbjct: 234 RIIDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTK 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATD+AARG+DI V+HVFNFD+P D+Y+HR+GRT RAGR G AI+LVE LL Sbjct: 294 ILVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLL 353 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 + R+ + I+ ++ L + + + Sbjct: 354 RMIERHTGKRIERALLPTLAEAVEKRQDLLLERVRQASAEP 394 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 206/395 (52%), Gaps = 7/395 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+ TF + +L L +A++ GF T IQA IP L +DV+G A TGTGKTAA+ + Sbjct: 1 MTI-TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ + +S + +++ PTRELA+QVS+ ++ + + I GG Sbjct: 60 PLVEKI----NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +N I+V T GRLL +I + V T++LDEAD ML+MGF +DIE I Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPA 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 QTLLFSAT+ I+ AER + +P V I Q+Y + K L Sbjct: 176 EHQTLLFSATMPAP-IKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHE-RKKFDTLT 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL +IVF R + RV EL L G + G++ Q KR A+++ +G + Sbjct: 234 RLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIE 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI V+HV+NFD+P+ ++Y+HRIGRT RAG+ G A++ + + +L Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDML 353 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPS 395 + + + + L + + Sbjct: 354 RAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIR 388 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 142/408 (34%), Positives = 232/408 (56%), Gaps = 8/408 (1%) Query: 1 MT-VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYL 59 MT + TF+EL L + +L+A+ D GF P+ IQ+ +IP ++G D++G A TGTGKTAA+ Sbjct: 1 MTKIKTFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFG 60 Query: 60 LPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L ++ +K P+ LIL PTRELA+QV++ +AK+ L+I I GG Sbjct: 61 SIILNNMS----EKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DIVV T GR+L +++ ++ + V+ L+LDEAD ML+MGF DIE + Sbjct: 117 LRALRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLN 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +QTLLFSAT+ DAI+ ++R ++ D +S +T I Q+YY + + + Sbjct: 177 EDRQTLLFSATMP-DAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSD-RFES 234 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L ++ E +I+F + ++ V EL + ++ G + G+M Q +R +K+ E Sbjct: 235 LCRIIDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESN 294 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++ LVATDVAARGID+ +V+HV N+D+P+ ++Y+HRIGRT RA ++G A +LV +++ Sbjct: 295 LDFLVATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYI 354 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 +L ++ + + IK + + + K + + K Sbjct: 355 VLKQIEKTTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKF 402 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 155/440 (35%), Positives = 231/440 (52%), Gaps = 12/440 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF EL+L ++L+A+ ++G+ PT IQA AIP L G D+LG A TGTGKTAA+ LP L Sbjct: 1 MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60 Query: 64 QHLLDFPRKKSG----PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 Q L PR + R LI+TPTRELA QV + R K+ L + GGV Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DI+VAT GRLL + + D V+ L+LDEADRMLDMGF DI+ + Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 KQ+LLFSAT D I++ A LL DP+ + P ++I Q + + K ALL Sbjct: 181 KHKQSLLFSATF-SDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKK-ALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H++ + ++ +VF R + + +A L + GI L G Q R +A++ +G + Sbjct: 239 THIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 LVATD+AARGIDI ++ HV N+++P + Y+HRIGRT RAG G A+SLV + Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGF 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + R+ ++ I+ ++ + +E + + K + ++ Sbjct: 359 MQDIERFTKQNIEKVLVPGFEAEPGERAEPLA------MGRQTIWGGLGKPPSRDVMQAA 412 Query: 420 HRDTKNIGKRRKPSGTGVPP 439 + ++ +R G P Sbjct: 413 AKAARSEMMQRIRDTKGAQP 432 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 142/385 (36%), Positives = 220/385 (57%), Gaps = 5/385 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F +L L ESLL+A++D GF P+ IQA +IP AL+G D++G A TGTGKTAA+ Sbjct: 1 MNNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGC 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + + +KKS P+ LIL PTRELA+QV++ L KH L + I GG Sbjct: 61 AIINNADFSGKKKS--PKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQI 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 DIVV T GR+L I+ ++ + L+LDEAD ML+MGF D+E I + Sbjct: 119 RALKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKT 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSAT+ I+ A ++ D ++ S+ KI Q+Y+ + + L Sbjct: 179 DRQTLLFSATMP-PQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRD-RFETL 236 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L E +I+F + ++ V E+ ++ G + G+M Q R + +++ EG + Sbjct: 237 CRVLDFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSL 296 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 + LVATDVAARGID+ V+HV N+D+P+ ++Y+HRIGRT RA R+G A SLV ++++ Sbjct: 297 DFLVATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMM 356 Query: 360 LGKVGRYIEEPIKARVIDELRPKTR 384 L ++ ++ + I + + + + Sbjct: 357 LKQIQKHTKSKIIRKAVPTVDEIFQ 381 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 143/392 (36%), Positives = 218/392 (55%), Gaps = 7/392 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L L + +A++ GFT+P+ IQ IP + G DV+G A TGTGKTAA+ LP L Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 L KS P+ L+L PTRELA+QV++ + A+ ++I I GG Y Sbjct: 193 L----NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLR 248 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++++ + D + ++LDEAD ML+MGF +D+E I +T KQ Sbjct: 249 RGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQV 308 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ AI+ ++R L P EV+ + R + I Q Y E K L +L+ Sbjct: 309 ALFSATMPS-AIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHRE-KLDALTRILE 366 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + I+FVR + ELA LR G + G++ Q +R + +L +GR+++LVA Sbjct: 367 VTDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVA 426 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ ++HVFN+D+PR ++Y+HRIGRT RAGR G A+ V + +L + Sbjct: 427 TDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIE 486 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 R + + + + A K + +K Sbjct: 487 RATKSRLNEIELPSVDQVNEARKAKFNRELTK 518 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 141/405 (34%), Positives = 207/405 (51%), Gaps = 7/405 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T TF EL L+E++L+ALQ+ GF +P+ IQA IP L G DV+G A TGTGKTAA+ +P Sbjct: 5 TFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L+ + S + LIL PTRELA+QVS+ L+K + I I GG + Sbjct: 65 VLERIDT----SSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + IVV T GR++ +++ V ++LDEAD MLDMGF +DIE I + Sbjct: 121 RSLKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPE 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT+LFSAT+ I +R L DP + + + I Q Y+ K ++ Sbjct: 181 DRQTILFSATMSKP-IMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQA-KVEVMT 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+ +VF + +V E+ L+ G + + G++ Q +R+ + + G Sbjct: 239 RLIDMHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTT 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGID+ + V N+D+P + Y+HRIGRT RAG G A SLV + L Sbjct: 299 ILVATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRL 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 + Y + I+ VI + S + E+ Sbjct: 359 KSIESYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEE 403 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 155/452 (34%), Positives = 239/452 (52%), Gaps = 19/452 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TFS+L+LD + +A+ + G+T+PT IQ AIP LD D+LG A TGTGKTAA+ LP Sbjct: 5 IETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPM 64 Query: 63 LQH-LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + + + + PR L+L PTRELA+QV + K+T + A I GGV A+ Sbjct: 65 IHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAK 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+++AT GRL+ + + + +E +LDEADRMLDMGF DI I R Sbjct: 125 AIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKR 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q L FSAT+ + I+ A +L +P+ + P + + I Q + + K LL+H Sbjct: 185 RQNLFFSATMPPE-IEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKN-LLLH 242 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L K ++I+F + + ++++ L ++GI + G Q R A++ G+ Sbjct: 243 LFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRA 302 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGIDI D++HV N+++P +TY+HRIGRTARAG+ G AI++ EA + L+ Sbjct: 303 LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIK 362 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK-------------KVLAKRAEKKKA 408 + + I I +D P A E TGK K + Sbjct: 363 DIEKVIGISIP---VDRDHPYHAARVESHTGKAPKLHGSGGGGNRGQRRPTQSGDSSSGR 419 Query: 409 KEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQ 440 + K+ ++ ++RKPS +G + Sbjct: 420 NRNSQQNSKQNSNRSQGQSEKRKPSDSGYKSE 451 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 135/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLP 61 + +F L L + +++AL+ KGFT PT IQ AIP ++G RDV+G A TGTGKTAA+ +P Sbjct: 1 MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L+ + + R + LIL PTRELA+QV++ + L++ + GG + Sbjct: 61 ILETIDESSRN----TQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 IVV T GR+L +I V ++LDEAD ML+MGF D+E I Sbjct: 117 ELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTE 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 K+ LLFSATL D+I A+ + + + Q YY + K LL Sbjct: 177 KRMLLFSATLP-DSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRD-KFELLSR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + ++F + + V E+++ L E G L G+M Q +R + + + ++NV Sbjct: 235 IIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINV 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGIDI D++HV N+D+P++ ++Y+HRIGRT RAG++G A++ VE + Sbjct: 295 LVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFK 354 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 + + I+ + +++ A K + + + + Sbjct: 355 YIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGK 395 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 144/373 (38%), Positives = 209/373 (56%), Gaps = 5/373 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 FSEL L + +L+AL ++G+T PT IQ AIP L RD+LG A TGTGKTAA+ +P L Sbjct: 1 MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL 60 Query: 64 QHLLDFPRKKSGPPR---ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 Q L + K +G PR LILTPTRELA+Q+++ +H ++ I GGV+ + Sbjct: 61 QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQV 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 D+++AT GRLL + + R V+ +LDEADRMLDMGF D++ + + Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q+L FSAT+ D + A+ +L +P +V P + I Q Y E K LLV Sbjct: 181 HRQSLFFSATMPPD-VAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGK-EDKRKLLV 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 H+L ++VF R + ++ L +AGI + G Q R A+ Sbjct: 239 HILDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETR 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATD+AARGID+ ++SHV N+++P +TY+HRIGRT RAG G A+S +A + L Sbjct: 299 VLVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYL 358 Query: 361 GKVGRYIEEPIKA 373 + + I + + Sbjct: 359 RDIHKLIGKRVPV 371 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 156/447 (34%), Positives = 224/447 (50%), Gaps = 10/447 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L +SL+ ++ G+ PT IQA A+P ++G D++G A TGTGKTAA+LLP L Sbjct: 1 MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+ P ++ PR LIL PTRELA Q+ + + T L I GGV Sbjct: 61 HRLITNP-ARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRAL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D++VA GRLL ++ + N +ETL+LDEAD M DMGF DI+ I ++Q Sbjct: 120 RQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ AI A L DPV V + Y K LL+HLL Sbjct: 180 TLLFSATMP-PAISGLAAETLTDPVTVRIGH-LAPLSTVEHAIYPVSHN-QKAPLLLHLL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + IVF R + R LA L +G L+G + Q +R A+ G +LV Sbjct: 237 GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ V+HV NFD+P + + Y HRIGRT RA R G A + V D ++ + Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAI 356 Query: 364 GRYIEEPIKARVIDELRP-----KTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 ++++P+ R ++ P + AP+ + +P + A R ++++ R Sbjct: 357 ESHMKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYG 416 Query: 419 -RHRDTKNIGKRRKPSGTGVPPQTTEE 444 R R + G R + P Sbjct: 417 DRPRGPRPEGARADSARDDRPRSDRPR 443 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 153/390 (39%), Positives = 218/390 (55%), Gaps = 7/390 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F EL+LDE ++ A+ + GF + IQA AIP A++GRD++G A TGTGKTAA+ + Sbjct: 1 METVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 P LQ + K + +IL PTRELA+QV++ R LAK + I GG + Sbjct: 61 PLLQKV----DPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + IVV T GR++ +++ + V T++LDEAD ML+MGF +D+E I + Sbjct: 117 IRSLKDGTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTL+FSAT+ AI D A + +DPV V K+ Q+YY ++K ++ Sbjct: 177 EERQTLMFSATMPQ-AIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKP-KNKVEVM 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL SIVF + +V EL L+ G L G++ Q +R+ + GR Sbjct: 235 CRLLDMYAPKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRT 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++LVATDVAARGID+ DV VFN+D+P+ + Y+HRIGRT RAGR+G A SLV + Sbjct: 295 DILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYK 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEK 389 L + RY + I + I L T EK Sbjct: 355 LRDIQRYCKTKIIPQAIPSLNDITEIKVEK 384 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 153/419 (36%), Positives = 224/419 (53%), Gaps = 7/419 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F EL+L ++L+A+ + G+ PT IQA AIP L+G D+LG A TGTGKTAA+ LP L Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 64 QHLLDFPRKKSG----PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L + R L+LTPTRELA QV + R K+ LD I GGV Sbjct: 61 HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + DI+VAT GRLL ++ D V+ LILDEADRMLDMGF D++ I Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 KQ+LLFSAT D I+D A LL++P + P ++I Q + + K ALL Sbjct: 181 KEKQSLLFSATF-SDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKK-ALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H++ + + ++ +VF R + + +A +L + GI L G Q R +A+ G + Sbjct: 239 AHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 LVATD+AARGIDI ++ HV N+++P + Y+HRIGRT RAG G A+S V + Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGF 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQT-GKPSKKVLAKRAEKKKAKEKEKPRVK 417 + ++ R+ ++ I + ++ P+ +E G+ + A R + + + Sbjct: 359 MQEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAAR 417 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 146/407 (35%), Positives = 222/407 (54%), Gaps = 12/407 (2%) Query: 1 MTVTT-----FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKT 55 M+ + F++L L ES+++A+ G+ P+ IQAA IP L+GRDVLG A TGTGKT Sbjct: 1 MSQESQAQLQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT 60 Query: 56 AAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGV 114 AA+ LP L ++ K P+ L+L PTRELA+QV++ + + K + + GG Sbjct: 61 AAFALPVLSNIDLQQIK----PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQ 116 Query: 115 AYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174 Y IVV T GR++ ++ D ++TL+LDEAD ML MGF D+E + Sbjct: 117 PYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAV 176 Query: 175 AGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH 234 + ++Q LFSAT+ I+ A+ L+DPVEV+ T I Q Y+ + H Sbjct: 177 LKKLPAKRQVALFSATMP-PQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGM-H 234 Query: 235 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 K L +L+ I+F R + ELA+ L+ G+ + G+M Q +R I L Sbjct: 235 KLDALTRILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAML 294 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 EG++++LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI Sbjct: 295 KEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATP 354 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 + +L ++ R +PI+ + + K T + ++ + Sbjct: 355 REKGMLRQIERATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQG 401 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 149/452 (32%), Positives = 229/452 (50%), Gaps = 12/452 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++T+FS L L E ++ AL + PT IQA AIP L GRD++G A TGTGKTAA+ LP Sbjct: 35 SLTSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALP 94 Query: 62 ALQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L L+ P R + R L+L+PTREL+ Q+ ++ + +H ++ ++ GGV Sbjct: 95 ILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQI 154 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 S D++VAT GRL+ ++ VE L+LDEAD+MLDMGF I I Sbjct: 155 RALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPH 214 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++ +L FSAT+ AI + A +L DPV V+ P + ++ Q D +K LL Sbjct: 215 KRHSLFFSATMPH-AIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKA-NKGQLLA 272 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L + R++VF R + ++ L +AGI + G Q +R+ + EG++ Sbjct: 273 EVLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIR 332 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATD+AARGID+ VSHV NFD+P ++Y+HRIGRTARAGR+G AIS + + L Sbjct: 333 TLIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFL 392 Query: 361 GKVGRYIEEPIK---------ARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 + + I+ + + EL P ++ + + + R + + + Sbjct: 393 RSIEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRPR 452 Query: 412 EKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTE 443 R + +P E Sbjct: 453 HGDERSGEGRSRAPRSEEGRPQAARAHQPRGE 484 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 164/442 (37%), Positives = 242/442 (54%), Gaps = 6/442 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF +L L SLL L+ +G+ PT IQA AIP L+ D+LG A TGTGKTAA+ LP Sbjct: 1 MTTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L H+L R+L+L+PTRELA Q++D + +K L IATI GGV Y + Sbjct: 61 LHHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYK 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DI+VAT GRL+ +I+++ D +AVE L+LDEAD+MLDMGF + I +A + Sbjct: 121 ALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQ 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q L FSAT+ + I A LL +P +V P +++ Q + + K ALL Sbjct: 181 RQNLFFSATMPKE-IAGLANELLTNPKKVEITPEATTAERVTQQVIFI-EQQRKRALLSE 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + R+++F R + +A +L+ G+ + G+ Q +R A++ GRV Sbjct: 239 LYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRA 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+ +V+HV N+++P + Y+HRIGRTARAG++G +I+LV + LL Sbjct: 299 LVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLK 358 Query: 362 KVGRYIEEPIK---ARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 + R + I R L+ A + K + + + + RV K Sbjct: 359 DIERITRQRIPSWDRRKDQALKLLDEAILASGQTEKPKTPDRVVEKTARHLDPDAERVHK 418 Query: 419 RHRDTKNIGKRRKPSGTGVPPQ 440 R R+ N +RR G + Sbjct: 419 RSRNRPNRDERRGNGRDGDNSR 440 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 149/435 (34%), Positives = 217/435 (49%), Gaps = 6/435 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + FS L L L+ AL D+G+ PT IQAAAIP AL G D+L +A TGTGKTAA++LP+ Sbjct: 25 MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 84 Query: 63 LQHL----LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 L+ L P R+L+LTPTRELA Q+ + + K+ L + GGV Sbjct: 85 LELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 144 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 +IVVAT GRLL ++K++N + VE ++LDEADRMLDMGF DI I Sbjct: 145 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 204 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++QTLLFSAT I+ A+ + P V + Q D L K +L Sbjct: 205 PKQRQTLLFSATF-SPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDAL-KKRSL 262 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L L+ + IVF + ++ V ++ L I + G+ Q R E + EG Sbjct: 263 LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGT 322 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + VLVATDVAARG+DI ++ V N+++P + Y+HRIGRT RAG G AISL++ + Sbjct: 323 LRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQK 382 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 + + + I+ P + + ++ + K K Sbjct: 383 MFEAIKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEYANK 442 Query: 419 RHRDTKNIGKRRKPS 433 +++K ++ P Sbjct: 443 SDKNSKKAEEKNDPG 457 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 150/419 (35%), Positives = 226/419 (53%), Gaps = 10/419 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF+E L + LL++L + +P+ IQ IP L+G D++ A TGTGKTA + LP L Sbjct: 1 MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L ++K+ R LILTPTRELA Q+ ++ + ++ HL + GG + Sbjct: 61 NSL---SKEKNHSIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAI 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI++AT GRLL Y+ R +E L+LDEADRMLDMGF D+ I + + Sbjct: 118 RSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRI 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSAT+ + IQ+ A +L++P EV I Q+ + K +LV+LL Sbjct: 178 TALFSATMPKE-IQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKK-KVLVNLL 235 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++IVF R + L +L+E I + G+ QG+R A++R ++ +L+ Sbjct: 236 NTESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILI 295 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI D+SHV NFD+P + Y+HRIGRT RA ++G +ISLV + LL + Sbjct: 296 ATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANI 355 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 YI+ I + P E++ + S R +++ + +K++ + K H Sbjct: 356 ESYIQFQIPLKQ-----NLYSLPLERKKKRKSSIHKTTRKKERFSNQKKRSKKKSFHEG 409 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 143/389 (36%), Positives = 218/389 (56%), Gaps = 8/389 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FS L L ++LL+++ D GF +P+ IQA AIP A+ G D++G A TGTGKTAA+ Sbjct: 1 MNEIKFSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGC 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + H+ K +IL PTRELA+QV+D + L+K+ L I + GG N Sbjct: 61 GIINHI-----SKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N +IVV T GR+L +IK ++ L+LDEAD ML+MGF D+E I + Sbjct: 116 RALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPS 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTLLFSAT+ D I+ A+R ++ D +S ++ I Q ++ + + L Sbjct: 176 ERQTLLFSATMP-DQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSH-KTRFEAL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L + +I+F R ++ V EL ++ G + G+M Q R +K+ EG + Sbjct: 234 CRVLDFDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSL 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 N LVATDVAARGID+ ++HV N+D+P+ ++Y+HRIGRT RA R+G A SLV ++ + Sbjct: 294 NYLVATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSM 353 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSE 388 L ++ + I + I + + S+ Sbjct: 354 LKQIKSVTKSDISRKNIPTVNDIFNSKSK 382 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 157/390 (40%), Positives = 215/390 (55%), Gaps = 2/390 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F++L+L E LL A++ +G++ PT IQ AIPP L+G D+LG A TGTGKTAA+ LP L Sbjct: 1 MQFADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L + G R+L+LTPTRELA QV++ K+ L A + GGV E Sbjct: 61 QRLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEAL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D++VAT GRLL + ++TL+LDEADRMLDMGF DI + R+Q Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ D I A +L PV V + I Q + + K A+L H+L Sbjct: 181 TLLFSATMPPD-ILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSD-KRAMLEHVL 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K P R+IVF R + + + L A I + G QG R A+ +G +VLV Sbjct: 239 KDPALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGIDI D+SHV N+D+P ++Y+HRIGRTARAG G A+S ++ + L + Sbjct: 299 ATDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 R I++ + + P Q + Sbjct: 359 ERLIQKRLPLLADPGVPVFQIDPRPAQQAQ 388 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 167/444 (37%), Positives = 236/444 (53%), Gaps = 11/444 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F EL L L A++ G+ PT IQ +IP L+G+D+LG A TGTGKTAA+ LP L Sbjct: 1 MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60 Query: 64 QHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 Q LLD + + R LIL PTRELA+QV D RE A+ T + A I GGV + Sbjct: 61 QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQK 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D++VAT GRLL I ++ + +E +LDEADRMLDMGF DI + + Sbjct: 121 LIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 Q L FSAT+ + I A +L +PV V P + ++I Q YR D K ALL Sbjct: 181 QNLFFSATMP-EEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDK-RRKGALLKE 238 Query: 242 LLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL + E + +VF R + ++ L +AGI + G Q +R EA+ ++ Sbjct: 239 LLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIR 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATD+AARGID+ DVSHVFN+D+P +T++HRIGRTARAG++G AIS + L Sbjct: 299 VLVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDL 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I D+ + P +K+T + + R +++A+ + R Sbjct: 359 RGIEKLTRVKIPEG--DQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRG 416 Query: 421 RDTKNIGKRRKPSGTGVPPQTTEE 444 N GK+ + P +E+ Sbjct: 417 NRKGNHGKQN----SNNAPHNSEQ 436 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 164/456 (35%), Positives = 228/456 (50%), Gaps = 15/456 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ +F++L+L + LL A+ + G+T PT IQ AI P L GRD++ +A TGTGKTA + L Sbjct: 1 MSSISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFAL 60 Query: 61 PALQHLLD-FPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P LQ L P PR L+LTPTRELA QV + L H L I GGV Sbjct: 61 PLLQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKP 120 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 E ++ DI++AT GRL+ K+E D VE L+LDEADRMLDMGF +D+ + Sbjct: 121 QIEALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLL 180 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +Q LLFSAT D I+ A+ L DP V +P + + + D K L Sbjct: 181 PAERQNLLFSATF-NDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRN-RKREL 238 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L HL++ + + +VF R + + LA L + GI + G QG R A+ +G Sbjct: 239 LTHLVESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGS 298 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + VLVATD+AARGIDI ++ V N+++P + Y+HRIGRT RAG G A+SLV + Sbjct: 299 LRVLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELK 358 Query: 359 LLGKVGRYIEEPIKARVIDELR------PKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 LL + +I PI P+ P Q G+ + R ++ K K Sbjct: 359 LLADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKKPHN 418 Query: 413 KPRVKKRHRDTKNIGKR-----RKPSGTGVPPQTTE 443 KP + P PP+ + Sbjct: 419 KPARRADAPTLPMDAPEHDSGAPAPVAEAQPPRQRK 454 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 574 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 147/432 (34%), Positives = 225/432 (52%), Gaps = 34/432 (7%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF +L L + L++L + G+++PT IQ AIP + G+D++ A TGTGKTAA+ +P + Sbjct: 6 KTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + K + LIL PTRELA+QV+ +EL K+ + + GG + + Sbjct: 66 EKV----NPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFL 121 Query: 124 SENQDIVV-ATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + D+VV T GR+ ++ + V+ +LDEADRML+MGF DIE I + Sbjct: 122 KKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDR 181 Query: 183 QTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 Q LLFSAT+ + I D AE L + + P +KI Q YR + + K L Sbjct: 182 QNLLFSATMPKE-ILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRD-KFKKLTE 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L Q EA + I+F + + ELA L E G N + G+ Q KR + G++ + Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI V V N+ +PR ++Y+HRIGRT RAGR+GTAIS++ + L Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + + I+ A++KK +K + ++ R Sbjct: 360 NIQKKTKANIEVI--------------------------NEAQEKKLSSAQKDKSSQKER 393 Query: 422 DTKNIGKRRKPS 433 ++N +RR+ S Sbjct: 394 SSRNQTRRRQRS 405 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 150/447 (33%), Positives = 237/447 (53%), Gaps = 9/447 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F++L L + LL+A+ + G+ PT +QAAAIP L RD++ A TGTGKTA+++LP + Sbjct: 15 MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 +L R ++ PR LIL PTRELA QV+++ + K+ L ++ + GGV Sbjct: 75 D-ILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAAL 133 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+++AT GRLL + + E L++DEADRMLDMGF DIE I + +Q Sbjct: 134 EKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQ 193 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ AI+ A+R L +P ++ + I Q K L +L Sbjct: 194 TLLFSATMP-PAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKK-LCDML 251 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + +I+F ++ V +LA L + G + + G+M Q +R ++R G+++VLV Sbjct: 252 RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 A+D+AARG+D+ +SHVFNFD+P D Y+HRIGRT R G G A++ V D + + Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371 Query: 364 GRYIEEPIKA---RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I R + K+ + KP ++ A + +K ++ E P+ Sbjct: 372 EKLMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKLPED 431 Query: 421 RDT---KNIGKRRKPSGTGVPPQTTEE 444 R + K + P T P + Sbjct: 432 RLDSVESDFPKNQAPRNTASRPVSKAR 458 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 163/445 (36%), Positives = 236/445 (53%), Gaps = 11/445 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF + L+++LL+AL +G+T+PT IQ AIP + G+D+LG A TGTGKTAA+ LP L Sbjct: 16 TTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPIL 75 Query: 64 QHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L + K R+L+L+PTRELA Q+ D + H +A I GGV Y Sbjct: 76 HRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERA 135 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + DI+VA GRLL +I+++N D + E L+LDEAD+MLD+GF + I I ++ Sbjct: 136 LQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKR 195 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q L FSAT+ + I A LL+DPV+V P + ++I Q + K ALL + Sbjct: 196 QNLFFSATMPTE-IGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQG-RKRALLTEM 253 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 PE TR +VF + + ++A +L G+ + G Q +R + +G++ VL Sbjct: 254 FSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVL 313 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGID+ VSHV NF++P + Y+HRIGRTARAG GTAIS V + LL Sbjct: 314 VATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKD 373 Query: 363 VGRYIEEPIK---ARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + + I R L GK + + E+ + + R + Sbjct: 374 IEKVTRQKIPAIDRRNDKALGQLDATIMATGVGKKATMPEREGGERNEGGRGGRGRSRVP 433 Query: 420 HRD-----TKNIGKRRKPSGTGVPP 439 HRD R++ + G P Sbjct: 434 HRDGVRPEGGGQPHRQRRARPGETP 458 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 218/465 (46%), Gaps = 35/465 (7%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF E + ++ ++ + +T PTAIQ+ P AL GRD++G A TG+GKT AY+LP Sbjct: 113 PILTFQEGCFPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILP 172 Query: 62 ALQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P ++ P L+L PTRELA Q+ A + K + + + GG + Sbjct: 173 AIVHITHQPYLQRGDGPMALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGGAPKGSQL 232 Query: 121 E------VF-------------------SENQDIVVATTGRLLQYIKEENFDCRAVETLI 155 +I +AT GRL+ +++ + R L+ Sbjct: 233 RDWREFGALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLV 292 Query: 156 LDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPS 215 LDEADRMLDMGF I I + R QTL++SAT + ++ AE L+D ++V+ Sbjct: 293 LDEADRMLDMGFEPQIRKIVEQIRPDCQTLMWSATWPKE-VRSLAEDFLKDYIQVNIGAL 351 Query: 216 TR-ERKKIHQWYYRADDLEHKTAL--LVHLLKQPEATRSIVFVRKRERVHELANWLREAG 272 +I Q + + + L L + + ++++F +++V EL +R G Sbjct: 352 QLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNG 411 Query: 273 INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTY 332 + + G+ Q +R+ + GR +LVATDVAARG+D+ D+ V N+D P + Y Sbjct: 412 WPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDY 471 Query: 333 LHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTG 392 +HRIGRTAR+ + GTA + + ++ ++E +A A + G Sbjct: 472 IHRIGRTARSNKTGTAYTFFTPGNMKQAKELIAVLKEANQAINPKLFEIANMARNNSYGG 531 Query: 393 KPSKKVLA-----KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKP 432 + + L + +++ + P +R +N KP Sbjct: 532 GRNSESLPPYKLLQEPWGRESMQGTGPPSYQRSPAPQNGYGGPKP 576 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 572 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 145/410 (35%), Positives = 212/410 (51%), Gaps = 8/410 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V +F+EL + + +L + G+ PT IQ+ P AL GRDV+G A TG+GKTA++LLP Sbjct: 90 PVLSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLP 149 Query: 62 ALQHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H++ PR ++ P LIL PTRELA QV A+E A L GG A Sbjct: 150 AVIHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQL 209 Query: 121 EVFSENQDIVVATTGRLLQYIK-EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +I +AT GRL+ +I+ + N V L+LDEADRMLDMGF I I G TR Sbjct: 210 REMQKGGEICIATPGRLIDFIRVQRNL-LSRVTYLVLDEADRMLDMGFEPQIRKIIGHTR 268 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTR-ERKKIHQWYYRADDLEHKTAL 238 +QTL++SAT + +Q A L D ++V+ + I Q DD K Sbjct: 269 PDRQTLMWSATWPRE-VQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWS-KEQR 326 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L+ LL R++VFV + R +L N LR G + G Q R + GR Sbjct: 327 LIELLTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGR 386 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +N+LVATDVA+RG+DI ++ +V NFD P + Y+HRIGRTAR+ + GTA + + Sbjct: 387 MNILVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVR 446 Query: 359 LLGKVGRYIEEPIKARVID--ELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 + ++E + + +L + + T K + ++ + Sbjct: 447 QARDLIDILDEANQEISAELVQLAGMSNYLRKSSTLKKNPPAFQQKPPGR 496 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 572 bits (1476), Expect = e-162, Method: Composition-based stats. Identities = 131/423 (30%), Positives = 196/423 (46%), Gaps = 10/423 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T+F +L+ +Q GF+ PT IQA + P AL +DV+ A TG+GKT YLLP Sbjct: 148 PITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLP 207 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 H+ P +L+L PTRELA Q+ + A + + + + + GG Sbjct: 208 GFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLR 267 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D+VVAT GRL ++ + V L+LDEADRMLDMGF I I E R Sbjct: 268 DLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPR 327 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALL 239 +QTL+++AT + ++ AE LL PV+V+ I Q E K L Sbjct: 328 RQTLMYTATWPKE-VRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSE-KLRRL 385 Query: 240 VHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 +L+ ++ + ++F + +LA L + G+ Q +R + + GR Sbjct: 386 EQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGR 444 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +LVATDVAARG+DI D+ V N+D P + Y+HRIGRT RAG G A + D Sbjct: 445 SPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSK 504 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 + + +E + R S G + A R+++ + + R Sbjct: 505 YAADLIKILEGANQRVP----RDLADMASRGGRGGRKRNRWATRSDRGGSHSELDSRYGG 560 Query: 419 RHR 421 R Sbjct: 561 RDG 563 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 571 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 146/374 (39%), Positives = 212/374 (56%), Gaps = 7/374 (1%) Query: 17 EALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGP 76 A++ GF P+ IQAA IP GRDV+G A TGTGKTAA+ LP L L + Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRL----DRSQKK 222 Query: 77 PRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATTG 135 P+ L+L+PTRELA+QV+D +E A H + + I GG +Y IVV T G Sbjct: 223 PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPG 282 Query: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195 R++ +++ + D ++ L+LDEAD ML+MGF +D+E I +T KQT LFSAT+ + Sbjct: 283 RVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPA-S 341 Query: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255 I+ +++ LEDP EV+ R IHQ Y + +K L +L+ E I+F Sbjct: 342 IRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHH-YKLDALTRILEVTEFDAMIMFA 400 Query: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 R ++ ELA LR G + + G+M Q +R + +L +GR+++LVATDVAARG+D+ Sbjct: 401 RTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVE 460 Query: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375 +SHV N+D+P ++Y+HRIGRT RAGR G AI V + LL + R + I+ Sbjct: 461 RISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQ 520 Query: 376 IDELRPKTRAPSEK 389 + + K Sbjct: 521 LPTVDEVNETRKAK 534 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 571 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 137/407 (33%), Positives = 215/407 (52%), Gaps = 7/407 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F +L + + +A+ D GF + IQ+ AIP L +DV G A TGTGKTAA+ + Sbjct: 1 MEKLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 P L+++ + + +IL PTRELA+QV++ R+L+ + +D+ + GG Sbjct: 61 PLLENI----DSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + I++ T GR++ +I ++T+ILDEAD MLDMGF +DIE+I + Sbjct: 117 IKALQKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 + +Q LLFSATL + I A+R +P V + Q Y+ + + K LL Sbjct: 177 YERQFLLFSATLPQE-ILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKE-DMKLELL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL + S+VF + +V +L + L+ G L G++ Q +R+ + + +G + Sbjct: 235 SRLLDLHDFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNI 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVAARGID+ V VFNFD+P + Y+HRIGRT RAG+ G A S V + Sbjct: 295 EILVATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQ 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 L + RY + I+ I L + + +K+ + K+ Sbjct: 355 LRDIQRYAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKE 401 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 151/398 (37%), Positives = 231/398 (58%), Gaps = 2/398 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ ++F+EL L L L++ G+ +PT IQ+ AIP L G D+L A TGTGKTA++ L Sbjct: 1 MSASSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFAL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ L P P R L+L PTRELA+QV+D+ E + + + ++ GGV N Sbjct: 61 PIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL ++++ +E L+LDEADRMLD+GF I+ I Sbjct: 121 KRLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAAD 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLF+AT ++++ AE L +P ++ P K+I Q+ Y+ D K +L Sbjct: 181 DRQTLLFTAT-ADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVD-YGQKADILS 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + + +++VFVR ++RV EL +L + GIN + GE Q +R + G ++ Sbjct: 239 YLITEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLH 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+DI + +V N+D+P + Y+HRIGRT RAG G A+SLV + L Sbjct: 299 VLVATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFL 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 ++ + I++ IK R + + R + KP K+ Sbjct: 359 QRIEKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRK 396 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 144/398 (36%), Positives = 209/398 (52%), Gaps = 7/398 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L + LL+A+ D GF P+ IQA AIPP LDGRDV+G A TGTGKTAA+ +PAL Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + R + LIL PTRELA+QV++ ++LAK+ + I I GG + Sbjct: 93 IDVQDRS----VQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLK 148 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IV+ T GR++ +++ V+ +ILDEAD MLDMGF +DIE I E +QT Sbjct: 149 SGVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQT 208 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ I ++ +DPV V I Q Y+ + K ++ L+ Sbjct: 209 ILFSATMSKP-IMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEV-KSKAKVEVMCRLID 266 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +VF + +V E+ L+ G L G++ Q +RN + + G N+LVA Sbjct: 267 MYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVA 326 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGID+ DV V NFD+P + Y+HRIGRT RAG+ G A S V + ++ Sbjct: 327 TDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQ 386 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 Y + ++ VI + + + + + Sbjct: 387 TYTKVKVEKGVIPSFEDIVGVRKARFIEQLQQTIQESK 424 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 147/462 (31%), Positives = 219/462 (47%), Gaps = 24/462 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F + L +++AL + G+ PT IQA A+PPA+ GRD+ G A TGTGKTAA+ LP Sbjct: 1 MTQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPI 60 Query: 63 LQHLLDF---PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 L L R R+L+L+PTRELA Q++D R+ K + GGV Sbjct: 61 LHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + D++VAT GRLL + + +VE L+LDEAD+MLD+GF ++ I Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q+L FSAT+ + I A + L DPV+V+ P +++ Q K ALL Sbjct: 181 KARQSLFFSATMPKN-IATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGA-KQALL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L+ R +VF R + + L + GI + + G Q +R A+ G Sbjct: 239 GTILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ V+HV NFD+P + Y+HRIGRTARAG G AIS + Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAY 358 Query: 360 LGKVGRYIEEPIKARVID-ELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 L + R + + I P +R + + + + ++ R + Sbjct: 359 LRDIERLTRQKVPEMAIPVGFVPPSRQEAAEAVAEAERDRRQPGPRGQRPGRSHGARPQG 418 Query: 419 ------------------RHRDTKNIGKRRKPSGTGVPPQTT 442 ++ G+ + + G P Q Sbjct: 419 GPGGRPQGGRQHGQGGRPGEGRPRDGGRPAQEARPGRPAQDG 460 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 159/457 (34%), Positives = 233/457 (50%), Gaps = 18/457 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+T F L + + ++ L G PT IQ +IP L+GRD++G A TGTGKTAA+ LP Sbjct: 21 TLTNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLP 80 Query: 62 ALQHLL-DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++ LL D R + R LIL PTREL Q+++ ++ + + L I + GGV+ Sbjct: 81 LIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQ 140 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + DI+VAT GRLL I AV L+LDEAD+MLD+GF D+ IA Sbjct: 141 LQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 200 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QT+LFSAT+ AI D A L DPV+V P + K+ Q+ + KT LL Sbjct: 201 KRQTMLFSATMPK-AIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + R++VF+R + +L L G + + G QG+R A+K +G + Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATDVAARGIDIP VSHV+N+D+P D Y+HRIGRTARAGR G AI+ + LL Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL----------------AKRAE 404 + R + I + + P ++ R+E Sbjct: 380 RDIERLMGIDITVASGEAPANISGGPRRANGNGNNRNRNGGQGREGQGRGEGRGDQNRSE 439 Query: 405 KKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQT 441 + +++ +PR + + + G+ R+P + Sbjct: 440 HRGNRQERRPRREGEGSEVRAGGEERRPRPERQTSRN 476 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 149/409 (36%), Positives = 220/409 (53%), Gaps = 5/409 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F+E+ L + LL+A++++GF P+ IQ IP L+GRD+LG A TGTGKTAA+ LP L Sbjct: 1 MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L + R LI+TPTRELA+Q+ + K+T L + I GGV Sbjct: 61 QSLSKG---EGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI++AT GRL I + A+E +LDEAD+MLDMGF DI+ + +Q Sbjct: 118 KAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + I+ A LL +P + +P T I Q Y D L +K +LL L+ Sbjct: 178 TLLFSATMPKE-IESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRL-NKISLLTSLI 235 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K+ + +R +VF + + +A+ L +A + + G Q R A+ EG++ VLV Sbjct: 236 KEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGIDI ++S+V N+D+P + Y+HRIGRT RAG G AI+L D L ++ Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++I I + G+ + ++ E++ Sbjct: 356 EKHIGMVIPEVPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVKTEEK 404 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 134/449 (29%), Positives = 215/449 (47%), Gaps = 7/449 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + F E L+ + +GF PT+IQA A+ GRD++G A TG+GKT AY+LP Sbjct: 99 PIMQFGESGFPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILP 158 Query: 62 ALQHLLDFPRK-KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 AL H+ + PR + P L+L PTRELA Q+ + + + I GG + A Sbjct: 159 ALIHISNQPRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQA 218 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +IV+AT GRL+ +++ + R L+LDEADRMLDMGF I I + R Sbjct: 219 DDLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRP 278 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALL 239 +Q L++SAT + I+ AE L + ++++ + I Q ++ E +T L Sbjct: 279 DRQVLMWSATWPKE-IRKLAEEFLREYIQINIGSLNLAANENIMQIIECCEEYEKETRLF 337 Query: 240 VHL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L L Q ++SI+FV + +V ++ N ++ G + G+ Q R+ + Sbjct: 338 KLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRRL 397 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 R +LVATDVA+RG+D+ DV +V NFD P + + Y+HRIGRT R+ KGT+ + + Sbjct: 398 RSGILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTFFTPANG 457 Query: 358 LLLGKVGRYIEEPIKARVID-ELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 G + + E + + E ++ + R + K + Sbjct: 458 AKAGDLIGVLREANQFVNPELEQYARSGGRNRSGGRGRYGGGGGGRQMRNDGKGRRGDDY 517 Query: 417 KKRHRDTKNIG-KRRKPSGTGVPPQTTEE 444 + + D + RR G+G Sbjct: 518 RSGNGDDRGPKFARRDDYGSGNRNDYGSR 546 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 144/377 (38%), Positives = 208/377 (55%), Gaps = 3/377 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FS+ +L +L+AL +G+ PT IQA AIP ++G D+LG A TGTGKTAA+ LP Sbjct: 1 MTKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPL 60 Query: 63 LQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L HL P G R L++ PTRELA Q+++ + + L + + GGV Sbjct: 61 LHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRL+ +++ D VE L+LDEAD+MLD+GF + IA Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTL FSAT+ + + A + L +P +VS + +++ Q + K LL+ Sbjct: 181 RQTLFFSATMPSN-VSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQA-QKGPLLLV 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ R++VF R + ++ + L AGI + G Q +R A+ G V Sbjct: 239 NLQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+P VSHVFN+++P + Y+HRIGRTARAGR+G AIS V + L Sbjct: 299 LVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLL 358 Query: 362 KVGRYIEEPIKARVIDE 378 + R I I + E Sbjct: 359 DIQRQIRMKIPIVDLPE 375 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 183/375 (48%), Gaps = 6/375 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF L +L L GF PT IQA P AL RD++ A TG+GKT YL+PA Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L P +LIL PTRELA Q+ D A + + + + GG + Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DIVVAT GRL ++ + D + V L+LDEADRMLDMGF I I E R+QT Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHL 242 L+++AT + ++ A LL +PV+V+ K I Q+ +E K L + Sbjct: 616 LMYTATWPKE-VRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQME-KERRLEQI 673 Query: 243 LKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ E + I+F + LA + + G+ QG+R+ + + G+ V Sbjct: 674 LRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCV 732 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARG+DI D+ V N+D P + Y+HRIGRT RAG G A + D Sbjct: 733 LIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAP 792 Query: 362 KVGRYIEEPIKARVI 376 + + +E + Sbjct: 793 DLIKVLEGANQQVPP 807 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 569 bits (1467), Expect = e-161, Method: Composition-based stats. Identities = 149/443 (33%), Positives = 225/443 (50%), Gaps = 4/443 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F++L L E+ L A++ G+ PT +Q AIP L+GRD++ +A TGTGKTAA+LLP Sbjct: 1 MQNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 L L ++ PR+L+++PTRELA Q+S ++ + T + T+ GG Y Sbjct: 61 LSTL-PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINE 119 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRL + + D +++L+LDEADRMLDMGF + I T + Sbjct: 120 IRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADR 179 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT++ +IQ LL DP V + + + Q+ + K LL L Sbjct: 180 QTLLFSATIDH-SIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANF-KKPELLQAL 237 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L++ + R IVF R + R + A L +AG + + QG+R A+ GR ++L Sbjct: 238 LEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSIL 297 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDV ARGID+PDV HV NFD+P + Y+HRIGRT RAG +G A+S V + Sbjct: 298 VATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSD 357 Query: 363 VGRYIEEPIKARVIDELR-PKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I + + ++ T K+ + + A K + R Sbjct: 358 IEKLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKR 417 Query: 422 DTKNIGKRRKPSGTGVPPQTTEE 444 D + R + P + Sbjct: 418 DFERRSDSRAEGRSDNRPGRGKR 440 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 156/406 (38%), Positives = 232/406 (57%), Gaps = 7/406 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TTF++L L +LEAL D G+ +P+ IQA IP L+GRDVLG A TG+GKTAA+ LP L Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 Q+L + P+IL+L PTRELA+QV++ + +KH +++ + GG Y Sbjct: 66 QNL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + IVV T GRLL ++K D + L+LDEAD ML MGF +D+E I + Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ +AI+ R +++P EV S R I Q Y+ + K LV Sbjct: 182 QTALFSATMP-EAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRF 239 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + +I+FVR + E+A L G N+ L G+M Q R + ++RL +GR+++L Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + LL Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 + R ++ I + + EK K +++ + ++ +A Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRA 405 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 135/462 (29%), Positives = 228/462 (49%), Gaps = 23/462 (4%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 ++++ + ++ + F +P+ IQ+ A P L G D++G A TG+GKT ++LLP++ Sbjct: 102 SWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIV 161 Query: 65 HLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H+ P K G P +L+L PTRELAMQ+ + K + L A I GG + + Sbjct: 162 HINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALL 221 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+V+AT GRL+ +++ E R V L+LDEADRMLDMGF I I G+ R +Q Sbjct: 222 QQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQ 281 Query: 184 TLLFSATLEGDAIQDFAERLLED-PVEVSANPSTRE-RKKIHQWYYRADDLEHKTALLVH 241 TL+FSAT + +Q+ A+ ++ PV V ++I Q Y D + L+ Sbjct: 282 TLMFSATWPKN-VQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQ 340 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + + ++F + ++ ++ L + G + G+ Q R+ + + G + Sbjct: 341 LDCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRI 400 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHLLL 360 L+ATDVA+RG+D+ DVSHVFN+D P+ + Y+HRIGRT RAG G A+S + D + Sbjct: 401 LIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKIS 460 Query: 361 GKVGRYI---EEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR-- 415 + + + ++ I ++D R ++ +T S + K +K E Sbjct: 461 REYVQMLHDAKQEIPIDLLDLASINPRYRTQYKTVSSSYYDIKKFNSADTSKPSENQNVS 520 Query: 416 -------------VKKRHRDTKNIGKRRKPSGTGVPPQTTEE 444 +++ K+ +R S + + Sbjct: 521 NTANSSDKYTSSSSYNQYKSKKDEDDKRSRSRSPYKSENNNR 562 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 152/404 (37%), Positives = 225/404 (55%), Gaps = 7/404 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + TF L + +L+A+ + GFT P+ +QA AIP L G D++ A TGTGKTAA+ LP Sbjct: 1 MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + + + ++L++TPTRELA QVSD L + + TI GG +Y + Sbjct: 61 MSMIDANQNR----VQLLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGL 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + ++VAT GR+L +K A + ++LDEAD MLDMGF +DIE I + Sbjct: 117 IEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVH 241 QTLLFSAT+ + I+ A ++L +P VS P + I Q YY ++ E + ++ Sbjct: 177 QTLLFSATMP-EPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYE-RDDAMIR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL E +SIVF R ++ V L+ L G L G+M Q +R IK ++ + Sbjct: 235 LLDALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEI 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+++ D+SHVFN+ MP ++Y+HRIGRT RAG+KGTAI+LV + + Sbjct: 295 LVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQ 354 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 ++G+ + I+ R++ LR K L + A K Sbjct: 355 RIGKKVGSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASK 398 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 7/413 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FSEL L + A+ + GF + IQ+ AIP L G+D++G A TGTGKTAA+ + Sbjct: 1 MKKLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 PA++ L +S + LIL PTREL +QVS+ R+L K+ ++ + GG Sbjct: 61 PAIELL----EVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +N IV+AT GR++ +++ + ++ ++LDEAD MLDMGF +D+E I +T Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT++FSAT+ + I +R + P + KI Q YY + K L Sbjct: 177 IDRQTIMFSATM-TEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENA-KGEAL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L++ ++VF + +V + L+ G L G++ Q +R++ + G + Sbjct: 235 ARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNI 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +LVATDVA RGID+ +V VFN+D+PR G+ Y+HRIGRT RAG+KG A S + Sbjct: 295 EILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYN 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 L K+ R I+A I L T K V A K + ++ Sbjct: 355 LKKIERINGIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEK 407 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 155/446 (34%), Positives = 235/446 (52%), Gaps = 8/446 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 TF++LEL E +L A+ D G+T PT IQ AIP L RDV+G A TGTGKTA++ LP Sbjct: 153 NSVTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLP 212 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L+ +L R ++ PR LIL PTRELA+QV+++ K+ L+ A + GG + + E Sbjct: 213 MLE-ILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKE 271 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 V + D+++AT GRLL + L++DEADRMLDMGF DIE I G Sbjct: 272 VLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPN 331 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFSAT+ I+ A+ L P E++ + I D+ K L Sbjct: 332 RQTLLFSATM-APTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYS-KRETLRQ 389 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LLK P +IVF ++ V L L + G + L G++ Q R +++ + V Sbjct: 390 LLKDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKV 449 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LV +DVAARGIDI +SHVFNFD+P + Y+HRIGRT RAGR+G A S+ +D L Sbjct: 450 LVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAE 509 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK-----KAKEKEKPRV 416 + + + I +D ++ + ++ ++K + E++ +++ + + Sbjct: 510 AIEKLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPREQQPEAKP 569 Query: 417 KKRHRDTKNIGKRRKPSGTGVPPQTT 442 ++ R + + + +PP Sbjct: 570 QQTARPERQPTRNTRHQRDEIPPAPG 595 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 136/398 (34%), Positives = 208/398 (52%), Gaps = 6/398 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F+EL L + A+ D G+T T IQ+A IP ++G DV+G + TGTGKTAA+ +P + Sbjct: 1 MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 + L RK+ P+ LIL+PTRELAMQV D R+ K+ + + GG Sbjct: 61 EMLEVTDRKR---PQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILE 117 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + DIVV T GR+L +I+ L+LDEAD ML+MGF +DIE + ++ Sbjct: 118 LKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQR 177 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I + + +PV + + KI Q YY K +L+ L Sbjct: 178 QTVLFSATMPKP-ILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKK-EILMQL 235 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + +++F ++ V EL + L G L G+M Q R + +G++N+L Sbjct: 236 ISMQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINIL 295 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ + VFN+D+P+ + Y+HRIGRT RAG++G A++L+ A L Sbjct: 296 VATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRD 355 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 + R + + + L + + ++ Sbjct: 356 LERTTRSKLTQKPLPSLEEVRKIRLDFLREDLEHRMTR 393 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 152/485 (31%), Positives = 227/485 (46%), Gaps = 50/485 (10%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT +F EL L LL+A++D GF P+ IQ A+P L G D G A TGTGKTAA+ L Sbjct: 1 MT-ASFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 P L L + LIL PTRELA+QV++ +LA H + I I GG Sbjct: 60 PILDKLTPE-----RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQ 114 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++ +VV T GR++ ++K +LDEAD MLDMGF +DIE I +T Sbjct: 115 LRALAKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTP 174 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 Q +LFSAT+ AI++ ++R L +P ++ I Q YY K L Sbjct: 175 ASCQRVLFSATVP-PAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPH-QKMDAL 232 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL +++VF + E+ L++ G + L G + Q +R+ ++R + Sbjct: 233 CRLLDSRAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGL 292 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATDVAARG+D+ DV V N+D+P + Y+HRIGRT RAGR G+A + V +H Sbjct: 293 DVLVATDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYK 352 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK-------------- 405 + + R I + LR + + + + V + E+ Sbjct: 353 MRDIIRCTRARITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFP 412 Query: 406 -------------------KKAKEKEKP--------RVKKRHRDTKNIGKRRKPSGTGVP 438 + +++KP +++++D RR+P G Sbjct: 413 DGEITSRDVSAALFKLLMQRDFGDQDKPLDQDPLALEPRRQYKDRDGAPGRREPGKPGAR 472 Query: 439 PQTTE 443 PQ E Sbjct: 473 PQRRE 477 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 144/424 (33%), Positives = 217/424 (51%), Gaps = 3/424 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 ++F+ DE L+ ++ +T+PT IQ +P AL GRD++G A TG+GKTAA++ P L Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312 Query: 64 QHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 H++D + G P +I+ PTREL Q+ + K +L + GG + A+ Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 E +IVV T GRL+ ++K++ + + V L+ DEADRM DMGF + IA R + Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR 432 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV-H 241 QTLLFSAT I+ A +L DP+ V + + Q K L Sbjct: 433 QTLLFSATF-RKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L++ + ++FV K+ ELAN L++ G N L G+M Q +RN+ I + + V Sbjct: 492 LVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DIP + V N+D+ R DT+ HRIGRT RAG KG A +L+ D G Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + R +E + + L + +++ K +E+P + + Sbjct: 612 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM 671 Query: 422 DTKN 425 D N Sbjct: 672 DRGN 675 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 158/443 (35%), Positives = 220/443 (49%), Gaps = 15/443 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF L L +L AL D G PT IQ +IP +DGRD+LG A TGTGKT +LLP L Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + R R L+L+PTRELA Q+ A++ AK+ H + + GGV ++ Sbjct: 61 HKIAEGRRHGIRN-RALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 N DIVVAT GRLL +++ N +I+DEADRMLDMGF DI I + +Q Sbjct: 120 KRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 +LLFSAT IQ+ A D V V P + IHQ + K LL +L Sbjct: 180 SLLFSATCP-PRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238 Query: 244 KQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + E + I+F R + +L+ L +AG + L G+ Q RN + R G + V Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI ++HV N+D+P++ + Y+HRIGRT RAGR G A+S D ++ Sbjct: 299 LVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVR 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + +PI +P + S + R + PR + R R Sbjct: 359 SIETMAGKPIPH-----------SPHSIPLSEQSLRKTFTRRPSFGRPQDRTPRGENRFR 407 Query: 422 DTKNIGKRRKPSGTGVPPQTTEE 444 + R + S +G Sbjct: 408 TDRGQQGRPRSSTSGNRFSYGNR 430 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 136/383 (35%), Positives = 207/383 (54%), Gaps = 5/383 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 FSE ++ ++ + PT IQ P AL GRD++G A TG+GKTA++LLPA+ Sbjct: 78 KFSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIV 137 Query: 65 HLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H P K G P +LIL PTRELA QV A + A + GG + AE Sbjct: 138 HAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++ ++V+AT GRLL +++ + + R L+LDEADRMLDMGF I + + R +Q Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLVHL 242 TL++SAT + ++ AE L D ++++ I Q ++ E K L+ L Sbjct: 258 TLMWSATWPRE-VKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESE-KFKRLLSL 315 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + R +VF ++R EL L++ G + + G+ Q +R+ A+ EG ++VL Sbjct: 316 LNSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVL 375 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVA+RG+DI DV ++ N+D P + Y+HRIGRT R+ +KGTA + A L + Sbjct: 376 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARE 435 Query: 363 VGRYIEEPIKARVIDELRPKTRA 385 + ++E + + DEL Sbjct: 436 LIEVLKEA-RQTIPDELFKIAEG 457 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 162/436 (37%), Positives = 236/436 (54%), Gaps = 4/436 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F +L + + AL+ KG++ PT IQ AIP LDG+D+LG A TGTGKTAA+ +P Sbjct: 1 MTDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPL 60 Query: 63 LQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 LQ LL+ R R LILTPTRELA Q++ + + A T + + + GGV + Sbjct: 61 LQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFH 120 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRLL ++ +E +LDEAD+MLD+GF ++E IA + Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTL FSAT+ + I+D +ER L +PVEVS P + + Q + + K LL Sbjct: 181 RQTLFFSATMPRE-IRDLSERFLTNPVEVSTAPPATTVETVTQQIAHL-EKDAKFPLLKE 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL++ E R++VF ++ LA L G+ + G+M Q +R + + + G++ Sbjct: 239 LLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKT 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARGID+ D+SHV NFDMP + + Y+HRIGRTARAG+ GTAI+ D +L Sbjct: 299 LVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLR 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPS-EKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + I + I P R P + + + K +K + + K Sbjct: 359 AIQKLIGKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAKGSGPRKGPGNGKFAQKPKGK 418 Query: 421 RDTKNIGKRRKPSGTG 436 K RR PS + Sbjct: 419 PTGKKSPPRRSPSKSS 434 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 137/399 (34%), Positives = 218/399 (54%), Gaps = 5/399 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L LD +L AL++ G+ +P+ IQ IP L+G DV+G A TGTGKTAA+ LPAL Sbjct: 63 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122 Query: 66 LLDFPRKKS--GPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 + + ++L+L PTRELA+QV++ A H + I GG Y Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR++ ++++ + D ++ L+LDEAD ML MGFA+D+E I T K Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LFSAT+ +I+ A++ L DP EV T I Q Y + HK + + Sbjct: 243 QVALFSATMPN-SIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHS-HKLDAMTRV 300 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ IVFVR ++ E+A+ L+ G + G++ Q R + L +GR+++L Sbjct: 301 LEVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDIL 360 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR+G AI V + +L + Sbjct: 361 VATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQ 420 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 + + + ++ + ++ + ++ + ++ Sbjct: 421 IEKATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESE 459 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 128/406 (31%), Positives = 205/406 (50%), Gaps = 8/406 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V + S++ + +L++L++ PT IQ P AL G+D++G A TG+GKT A++LP Sbjct: 111 PVESISKIGFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILP 170 Query: 62 ALQHLLDFPRKK-SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A H+L P K P +L+L PTRELA Q+ + + + + GGV Sbjct: 171 AFVHILAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSGQI 230 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + I++A GRL+ +++ + V L+LDEAD+MLDMGF I I + R Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRP 290 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRER-KKIHQWYYRADDLEHKTAL 238 +QTL++SAT + +Q A L + P+ V+ T ++I Q Y ++ E K A Sbjct: 291 DRQTLMWSATWPKE-VQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHE-KIAN 348 Query: 239 LVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L LL++ + R IVFV ++ + LR G+ + G+ Q +R + Sbjct: 349 LKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKT 408 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G+ +L+ATDVA+RG+DI DV +V NFD P + Y+HRIGRT RAG G + + + + Sbjct: 409 GKSPILIATDVASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDK 468 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 + L + + + E + V +L + + P Sbjct: 469 YRLARDLVKILRES-EQPVPPQLEKISYTSANNPRRNPYYGYGRSS 513 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 138/434 (31%), Positives = 214/434 (49%), Gaps = 3/434 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 FS+ +L ++LEAL++ + PT IQ AIP + G+D+L A TGTGKTAA+ LP L Sbjct: 1 MLFSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPIL 60 Query: 64 QHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + L R K R+L+L PTRELA QV+ + + AK + GGV+ + Sbjct: 61 EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 DIVVAT GRLL + ++TL+ DEADRM DMGF DI+ I ++ Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT + + +L+DP+ + I Q D + K LL + Sbjct: 181 QNLLFSATYPSE-VMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDR-DKKMELLNEV 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 +++VF R + + +++L G + L G+ Q R++ +++ G+ +L Sbjct: 239 FGVESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKIL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARG+DI ++ V N ++P + Y+HRIGRT RAG G AISLV + L Sbjct: 299 VATDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLID 358 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + + I++ + R + + ++R ++ K +K R + Sbjct: 359 IEKLIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNS 418 Query: 423 TKNIGKRRKPSGTG 436 K +R + Sbjct: 419 DKKDESKRGRNRDD 432 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 148/436 (33%), Positives = 223/436 (51%), Gaps = 2/436 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +LEL + ++++ G+ PT IQA IP L G+D++ SA TGTGKTAA++LP ++ Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + K L+LTPTRELA QV A+ K+ L + GGV+ + Sbjct: 85 LLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQ 144 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DI+VAT GRLL I ++ ++ L+LDEADRMLDMGF +DI+ + +Q Sbjct: 145 GGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQN 204 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 ++FSAT I+ A LL DPVE+ A+ + I + D + K LL HL+K Sbjct: 205 MMFSATFSTP-IKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCD-MARKVDLLCHLIK 262 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + + +VF R + ++ L + + G QG R A++ G + +LVA Sbjct: 263 TNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVA 322 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARGIDI + +V N D+P + Y+HRIGRT RAG G AISLV A + LLL + Sbjct: 323 TDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIE 382 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 424 ++I P+ + K + G ++ ++ A + + ++R D + Sbjct: 383 KFIGNPLPKVDVVGFEQKILKAEPLKQGGQRQRRPSQSARPGQKAKTNHASSQQRRSDWR 442 Query: 425 NIGKRRKPSGTGVPPQ 440 R + Sbjct: 443 KSSNRSTQGERRTRQR 458 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 160/433 (36%), Positives = 234/433 (54%), Gaps = 2/433 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M++ F + L+ S+L AL++ G+ PTAIQAAAIP A+ G+D+L +A TGTGKTAA+ L Sbjct: 1 MSLINFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFAL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L L + PR LILTPTRELA+Q+ ++ R A++ L I GGV Sbjct: 61 PILHRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQI 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++ N DI+VAT GRL+ + ++T +LDEADRMLDMGF DI I Sbjct: 121 KMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPR 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 QTLLFSATL I+ A R+L +PV + P + I Q + +K LL Sbjct: 181 DHQTLLFSATL-SPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFV-EQNNKRELLH 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L K+ + R++VF R ++R + +A L GI+ + Q R A+ G++N Sbjct: 239 NLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKIN 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATD+AARGID+ +SHV N+++P + Y+HRIGRTARAG GTA+S +A + +L Sbjct: 299 VLVATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRML 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + + + I + A K +K ++ ++ + K K K Sbjct: 359 KGIEKLTKSSIAICDNNPFHSIAVASMHKVAKAGNKPQYFQKKPRRFSNSKSKYSSKYSD 418 Query: 421 RDTKNIGKRRKPS 433 R + + K + Sbjct: 419 RKHSSGKRSYKSA 431 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 565 bits (1458), Expect = e-160, Method: Composition-based stats. Identities = 155/447 (34%), Positives = 226/447 (50%), Gaps = 13/447 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F + ++D G+ PT IQ IP ALDGRDV+G A TGTGKTAA++LP L Sbjct: 1 MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L+ PR G R +I+TPTRELA Q+ L K+T L T+ GGV Y + Sbjct: 61 QRLMRGPR---GRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +I V GRLL +++ ++ LILDEAD+M DMGF D+ I ++Q Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ DAI+ A L +P + + + Y + KTALL+ LL Sbjct: 178 TMLFSATMP-DAIRALAREALREPQTIQIGR-SAPVSTVTHAIYPVAEH-LKTALLIELL 234 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + ++F R + R L++ L G L+G M Q +R A+ GR +LV Sbjct: 235 RHTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILV 294 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ +SHV N+DMP++ + Y HRIGRT RA R G A +LV D ++ + Sbjct: 295 ATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAI 354 Query: 364 GRYIEEPIKARVIDELRPKTRAPS--EKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR-- 419 R I EP+K + AP+ + P + + E E++ ++ Sbjct: 355 ERLIGEPLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDNRAPRRHDA 414 Query: 420 -HRDTKNIGKRR--KPSGTGVPPQTTE 443 R + +RR + + P + Sbjct: 415 QERRSDTAPRRRDVQEWRSDAAPNRHK 441 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 133/399 (33%), Positives = 217/399 (54%), Gaps = 7/399 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPAL 63 F L L +S+L+AL+ KGF PT IQ IP L G D++G A TGTGKT A+ P + Sbjct: 6 KFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPII 65 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + +KSG + ++LTPTRELA+QVS+ L L I I GG + + Sbjct: 66 EKI----PEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRML 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DIVV T GR++ +++ ++ + + +LDEAD ML+MGF DI+ I T K+ Sbjct: 122 KSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKR 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L FSAT+ I ++ +++ V+ + Q Y+ + + K L ++ Sbjct: 182 MLFFSATMPKP-ILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESD-KFEALCRII 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +VF R + +LA L + G L G++ Q +R + + R + ++N+LV Sbjct: 240 DIEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILV 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI D++HV N+ +P+ ++Y+HRIGRT RAG++GTAI+ V + ++ L + Sbjct: 300 ATDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 + + +K I E++ +A + + + + + Sbjct: 360 KKTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEE 398 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 123/390 (31%), Positives = 200/390 (51%), Gaps = 10/390 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + FSE+ L + +++ ++ +G+ PTAIQA P A+ G + +G A TG+GKT Y+LP Sbjct: 279 PIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP 338 Query: 62 ALQHLL-DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P ++ P L+L PTRELA Q+ A E +++ + GG Sbjct: 339 AIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQM 398 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +IV+AT GRL+ ++ + + + L+LDEADRMLDMGF I I + R Sbjct: 399 RDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRP 458 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALL 239 +QTL++SAT + ++ AE L + ++++ I Q D+ K L Sbjct: 459 DRQTLMWSATWPKE-VKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFS-KEEKL 516 Query: 240 VHLLKQ-----PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 LL + I+FV + RV L ++R G+ + G+ Q +R+ ++ Sbjct: 517 KTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREF 576 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 G+ N+LVATDVAARG+D+ + +V NFD P++ + Y+HRIGRT R+ KGT+ + Sbjct: 577 RSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTK 636 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTR 384 ++ + + E + L R Sbjct: 637 NNAKQAKALVDVLREA-NQEINPALENLAR 665 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 120/399 (30%), Positives = 195/399 (48%), Gaps = 20/399 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +FS++E+ E ++ ++ +TRPT +Q AIP + RD++ A TG+GKTAA+LLP Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238 Query: 63 LQHLLDFPR--------------KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIA 108 L + ++ P L+L PTRELA+Q+ + AR+ + + + Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298 Query: 109 TITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFA 168 + GG ++VAT GRL+ ++ + L+LDEADRMLDMGF Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358 Query: 169 QDIEHIAGE--TRWR--KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ 224 I I + + + T++FSAT + IQ A L++ + ++ + I Q Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKE-IQMLARDFLDEYIFLAVGRVGSTSENITQ 417 Query: 225 WYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 284 ++ + ++ LL L + + ++VFV ++ L ++L G + G+ Q Sbjct: 418 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 477 Query: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344 R EA+ + G+ +LVAT VAARG+DI +V HV NFD+P + Y+HRIGRT R G Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 537 Query: 345 KGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKT 383 G A S + + + + K V L Sbjct: 538 LGLATSFFNERNINITKDLLDLL-VEAKQEVPSWLENMA 575 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 564 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 154/441 (34%), Positives = 214/441 (48%), Gaps = 7/441 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L ++ E ++ G+ PT IQA AIP +GRD++G A TGTGKTAA+LLP + Sbjct: 1 MSFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+ +K R LIL PTRELA Q+ +L + T L A I GGV Sbjct: 61 HRLMTTKSEK-RGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRAL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + DI+VA GRLL ++ + N A+ETL+LDEAD M DMGF DI+ I +Q Sbjct: 120 RQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ AI A L DPV V + Y K LL+HLL Sbjct: 180 TLLFSATMP-PAISGLAHETLTDPVTVRIGH-MAPLSTVEHAIYPISHT-QKAPLLLHLL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ IVF R + R LA L +G L+G + Q +R A+ G VLV Sbjct: 237 EEAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ V HV NFD+P + + Y HRIGRT RA +G A + V D ++ + Sbjct: 297 ATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV---KKRH 420 ++++P+ R ++ P P ++ ++ R + R Sbjct: 357 ESHMKKPLPRREVEGFEPDPSEFRRSYAPAPRYPARGRQGGYGGRPQQGGYRGQGDRARS 416 Query: 421 RDTKNIGKRRKPSGTGVPPQT 441 D + G P+ Sbjct: 417 SDRPQGERSFSERPQGDRPRD 437 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 564 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 212/416 (50%), Gaps = 6/416 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FS L L L+ AL +G+ PT IQAAAIP AL G D+L +A TGTGKTAA++LP+L+ Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 66 L----LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L P R+L+LTPTRELA Q+ + + K+ L + GG+ Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +IVVAT GRLL ++K++N VE ++LDEADRMLDMGF DI I + Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFSAT I+ A+ + P V + Q D + K LL Sbjct: 185 RQTLLFSATFSAP-IRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTI-QKRNLLER 242 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ + IVF + ++ V + L ++ + G+ Q R E + +G + V Sbjct: 243 LIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRV 302 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARG+DI ++ V N++MP + Y+HRIGRT RAG G AISL++ + + Sbjct: 303 LVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 + + I+ P+ + KP + +R + AK + + + Sbjct: 363 SIKELTGNKLLIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTR 418 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 134/394 (34%), Positives = 206/394 (52%), Gaps = 8/394 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M++ FSE+ L +L +++ GF PT IQ+ AIP L+GRD++G A TGTGKTAA+ + Sbjct: 1 MSM-NFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 P L+ L +K + LIL PTRELA+QV+ LA + +++ I GG + Sbjct: 60 PLLEMLDYSSKK----VQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQ 115 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +VV T GR++ +++ + + ++LDEAD ML+MGF +DI +I Sbjct: 116 INTLKKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVG 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q +FSAT+ AI A+ ++P + + Q+Y + K L Sbjct: 176 KERQITMFSATMPK-AIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGES-RKFDAL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L++ S+VF +++V EL L+ G L G+M Q RN + + Sbjct: 234 SKLIEYYNPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSI 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARGID+ D+ VFN+D+P+ + Y+HRIGRT RAG+ G A S Sbjct: 294 KVLVATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHR 353 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 L ++ RY + IK+ + + E G+ Sbjct: 354 LREIQRYTKIKIKSLNVPSEKDVNTKRMESFLGE 387 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 152/408 (37%), Positives = 232/408 (56%), Gaps = 5/408 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 FSEL + E + +AL G+ PTAIQ AIP L G+D+LGSA TGTGKTAA+ +P L Sbjct: 1 MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60 Query: 64 QHLLDFPRKK-SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 Q + + K + LILTPTRELA+Q+ ++ + AK+ ++ TI GGV+ E Sbjct: 61 QKIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+V+AT GRLL + ++ + V L+LDEAD+MLDMGF +D+ I +T ++ Sbjct: 121 LKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSAT+ I+ ++++L +P ++ P T+ I Q Y + +KT LL+ L Sbjct: 181 QTMLFSATMPKQ-IEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKA-NKTLLLIDL 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + +VF + + ++L L GI + + G Q R A+ +G+ +L Sbjct: 239 IYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKIL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARGIDI + +V NF++P +TY+HRIGRT RAG G A+SLV+ + LL + Sbjct: 299 VATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQ 358 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKE 410 V ++I I+A + P +++ K + ++K KE Sbjct: 359 VEKHINSKIEA--VGHKYQIQSQPKQREVITDKLKTDTSKKQEKPKKE 404 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 171/432 (39%), Positives = 248/432 (57%), Gaps = 6/432 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F LD S+L+A+Q+ G+ +PT IQ +IP + + VL SA TGTGKTAA++LP L Sbjct: 1 MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L R + PR+LI++PTRELA Q++D ++ +++ ++ TITGG++Y +F Sbjct: 61 DKLTKN-RSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMF 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 S+ DI+VAT GRLL +++ + + +E +ILDEADRMLDMGF DI I T ++Q Sbjct: 120 SKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L+FSAT + IQ A+ L +PV +S P K I Q Y AD+ HK +L H + Sbjct: 180 MLMFSATFDPP-IQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K E T++I+F + +L++ L + I L G+M QG R + I R +LV Sbjct: 239 KNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+A+RGID+ ++SHVFN+DMPR + Y+HRIGRT RA KG AISLV D L K+ Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R+ I+ I + K+ P +K + KK K + KKR R Sbjct: 359 ERFTNLKIEIASIPGMEATIL----KEAKAPKRKSKGRSFVKKGKVFKNEANAKKRIRSK 414 Query: 424 KNIGKRRKPSGT 435 GK + + + Sbjct: 415 PVFGKTNQSAPS 426 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 155/421 (36%), Positives = 222/421 (52%), Gaps = 3/421 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M TTF EL L +L L++ + PT IQAA IP L +D++G A TGTGKTAA+ L Sbjct: 1 MVSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFAL 60 Query: 61 PALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P +Q L + + R LIL+PTRELA Q+ ++ R A+ HL A I GGV Y + Sbjct: 61 PLIQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DI+VAT GRL+ +++ VETLILDEAD MLDMGFA ++ I + Sbjct: 121 FKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++ T +FSAT+ D I+ A+ LL+ P V +P + ++ Q+ K L Sbjct: 181 RKRHTQMFSATMP-DNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLT 239 Query: 240 VHLLKQPE-ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 + LLKQ E R+++F R R LA++L + G+ QG+R ++ G+ Sbjct: 240 LELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGK 299 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 VLVATD+AARGID+ DV V N+D+P + Y+HRIGRTARAG G AI+L + Sbjct: 300 TPVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIR 359 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 V + + + P + K S + KR+ ++ K R Sbjct: 360 KARNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGYGRNGS 419 Query: 419 R 419 R Sbjct: 420 R 420 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 154/450 (34%), Positives = 221/450 (49%), Gaps = 17/450 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L+ LL AL D PT IQ IPP ++GRDVLG A TG+GKT +LLP+L Sbjct: 1 MSFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + +IL+L+PTRELA Q+ ARE K+ + GG + Sbjct: 61 HR-NKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+V+AT GRL+ +++ + V T++LDEADRMLDMGF D+E I +Q Sbjct: 120 RRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLF+ATL IQ + +DPV + ++ I Q K LL +L Sbjct: 180 TLLFTATLPA-RIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTIL 238 Query: 244 KQPE--ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +P+ ++++F R + +LAN L G + L G+ Q +RN + + G+ + Sbjct: 239 TEPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRI 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI V+ V N+D+P+S + Y+HRIGRT RAGR G AIS D LL Sbjct: 299 LVATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLR 358 Query: 362 KVGRYIE------EPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + R + RP + G +R + A + +P Sbjct: 359 DIERLLGSSVPVSPLSPPPQPKGDRPFRSSGPRSSGGPRPGGFRGERTFRSDAPGEGRPG 418 Query: 416 VKKRHRDTKNIG-------KRRKPSGTGVP 438 ++ R + G +R KP+G G Sbjct: 419 FRQGGRTDRPAGGSGRSEWRRDKPAGHGPR 448 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 148/424 (34%), Positives = 232/424 (54%), Gaps = 5/424 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+V F++L +++ L+E L + PT +Q +IP L+G+++L +A TGTGKTAA+ L Sbjct: 1 MSV-NFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P +Q + +K +G P+ L+L PTRELA QV D+ + + T L I + GG + Sbjct: 60 PIIQTV--QQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQK 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E DI++AT GRLL ++ N + L+LDEADRMLDMGF D++ I Sbjct: 118 RKLEEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPA 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 KQ LLFSAT E I+ A +L+E PVEV +P+ + + Q Y D + K LL Sbjct: 178 EKQILLFSATFEK-RIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDK-KRKRELLA 235 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + +VF + ++ ELA L+ GI + G+ QG R A+ +G+V Sbjct: 236 YLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVR 295 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 L+ATDVAARG+DI ++ V NFDMP + Y+HRIGRT RAG+ G A+SL+ + LL Sbjct: 296 ALIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLL 355 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + +++ + + P E + ++ ++K + + + + Sbjct: 356 HAIENLLDQRLPQEWLAGFEPTLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRGKS 415 Query: 421 RDTK 424 R+++ Sbjct: 416 RNSR 419 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 127/419 (30%), Positives = 204/419 (48%), Gaps = 17/419 (4%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F+++EL + + E + + PT +Q A+P RD++ A TG+GKTAA+LLP Sbjct: 157 PIKSFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLP 216 Query: 62 ALQHLLDFPRKKSGP---------PRILILTPTRELAMQVSDHARELAKHTHLDIATITG 112 L L + ++ P LIL PTREL+ Q+ D AR+ + +++ + G Sbjct: 217 ILNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYG 276 Query: 113 GVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 172 G + + S +++VAT GRL+ + + +LDEADRMLDMGF I Sbjct: 277 GASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIR 336 Query: 173 HIAGE--TRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYR 228 I + ++QTL+FSAT + IQ A L + ++ + I Q Sbjct: 337 RIVEQHGMPPAGKRQTLMFSATFPKE-IQTLARDFLHSYIFLAVGRVGSTNENIIQEVLN 395 Query: 229 ADDLEHKTALLVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 287 D + K +LV LL+ + ++VFV + LA +L + + G+ Q +R Sbjct: 396 VADKD-KPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTER 454 Query: 288 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 347 A++ GR +L+AT VAARG+DIP+V HV NFD+P + Y+HRIGRT R G+ G+ Sbjct: 455 EHALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGS 514 Query: 348 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 A S + ++ + + E K V L + PS + + + + Sbjct: 515 ATSFFSEKNQNVVRDLVELLRES-KQAVPPWLEARVAYPSGPASRRNKNINSNVNKKNR 572 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 126/414 (30%), Positives = 191/414 (46%), Gaps = 8/414 (1%) Query: 19 LQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPR 78 +Q GF+ PT IQA + P AL RD++ A TG+GKT YL+P L P Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 305 Query: 79 ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLL 138 +L+L+PTRELA Q+ D A++ + + + + GG DIVVAT GRL Sbjct: 306 VLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLN 365 Query: 139 QYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQD 198 ++ V L+LDEADRMLDMGF I I + + ++QTL+F+AT + ++ Sbjct: 366 DILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKE-VRK 424 Query: 199 FAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHLLKQPEAT-RSIVFV 255 A LL +PV+V+ K I Q+ E K+ L +L+ E + I+F Sbjct: 425 IASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPE-KSRRLDQILRSQEPGSKIIIFC 483 Query: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 + +LA L + G+ Q +R+ + GR +LVATDVAARG+DI Sbjct: 484 STKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIK 542 Query: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK--A 373 D+ V N+D P + Y+HRIGRT RAG G A + D + + +E + + Sbjct: 543 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVS 602 Query: 374 RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIG 427 + + ++ + + S R + + G Sbjct: 603 QQLRDMVSRGGYGGRSRRWASSDDSYGGRGYDSGYTSRSTDNYNSGYGSQSGNG 656 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 174/460 (37%), Positives = 247/460 (53%), Gaps = 26/460 (5%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L LD ++L AL + + PT +QA AIP L GRD+L S+ TG+GKTAA++LPA+Q Sbjct: 60 FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119 Query: 66 LLD-----------------FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDI 107 + + PR P +L+LTPTRELA+QV++ A + ++ + Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVC 179 Query: 108 ATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGF 167 A+I GG+ Y ++ DI+VAT GRLL +I D A++ L+ DEADRMLDMGF Sbjct: 180 ASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGF 239 Query: 168 AQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY 227 A DI+ I T +QTL+FSATL+ I A R L DP + + ++ I Q + Sbjct: 240 ADDIDAIVNATPATRQTLMFSATLDA-RIAQLASRQLRDPQRIEIAAARADQSHIEQRLH 298 Query: 228 RADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 287 DD+ HK LL HLL+ ++IVF + LA L + G + L G+M QG R Sbjct: 299 FTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGAR 358 Query: 288 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 347 N + L G + VLVATDVAARGID+PD++HV NFD+P+ + Y+HRIGRT RAGR GT Sbjct: 359 NRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGT 418 Query: 348 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSE----KQTGKPSKKVLAKRA 403 AI+LV +D ++ R+ + I A VI+ L P+ + G Sbjct: 419 AINLVNHNDMFQWKRIERFTNQRIDASVIEGLEPRRSPKPRSNFGGKPGGGRGDFRGNGG 478 Query: 404 EKKKAKEKEKPRVKKRHRDTKNIGKRR---KPSGTGVPPQ 440 + + R G+R+ + G G P+ Sbjct: 479 GYRGGERSFGDRKFGGGESRTGFGERKFSGESRGFGNRPE 518 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 562 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 145/442 (32%), Positives = 221/442 (50%), Gaps = 7/442 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F + L + ++ G+ PT IQ AIP + G+DVLG A TGTGKTAA+ LP L Sbjct: 1 MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPML 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L+ ++ G R L+L PTRELA Q++D + K T L T+ GGV + Sbjct: 61 HRLVQ---EERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E +IVVA GRLL +I + D VE L+LDEAD+M DMGF D+ I ++Q Sbjct: 118 KEGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 L+FSAT+ D I+ A +L +PV V T + Y KT LL +L Sbjct: 178 NLMFSATMPDD-IRRLAHEILRNPVTVQV-SRTAPAATVSHALYPVGQH-LKTPLLFEML 234 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 K + ++F + + R + L +AG L+G + Q +R A+ +G ++V Sbjct: 235 KHTDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMV 294 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ +SHV N+D+P + + Y HRIGRT RA + G A ++V + D + + Sbjct: 295 ATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSI 354 Query: 364 GRYIEEPIKARVIDELRPKTRAP-SEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + + I+ R I+ AP + + +P ++ +R K + + Sbjct: 355 EKVLGTKIERRRIEGFDYAVPAPQKDTEFARPPREPQRRRDGAKPGAGRPAAAGPAGAKP 414 Query: 423 TKNIGKRRKPSGTGVPPQTTEE 444 +G + + +G P + Sbjct: 415 ASAVGAKGNAAASGRPAAHGSK 436 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 562 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 184/366 (50%), Gaps = 6/366 (1%) Query: 15 LLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS 74 LL + GF+ PT IQA + P AL RD++ A TG+GKT YL+P HL Sbjct: 33 LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92 Query: 75 GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134 P +L+L+PTRELA Q+ D A + + + L + GG DIVVAT Sbjct: 93 MGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATP 152 Query: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGD 194 GRL ++ R V L+LDEADRMLDMGF I I E R+QTL+++AT + Sbjct: 153 GRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKE 212 Query: 195 AIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHLLKQPEAT-RS 251 ++ A LL +PV+V+ K I Q+ +E K L +L+ E + Sbjct: 213 -VRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYME-KHKRLEQILRSQEPGSKI 270 Query: 252 IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 311 I+F ++ +LA L + G+ QG+R+ + + GR VLVATDVAARG Sbjct: 271 IIFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARG 329 Query: 312 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 +DI D+ V N+D P + Y+HRIGRT RAG G A + D + + +E Sbjct: 330 LDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGAN 389 Query: 372 KARVID 377 + + Sbjct: 390 QRVPPE 395 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 149/417 (35%), Positives = 220/417 (52%), Gaps = 3/417 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 VT+F DE LL+A++ +T+PT IQA A+P AL GRD++G A TG+GKTAA++ P Sbjct: 263 PVTSFGHFGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWP 322 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L HL+D + G P LIL PTREL++Q+ + A++ K +L++ GG + + Sbjct: 323 LLMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQS 382 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + +IVVAT GR++ +K + + + V L+LDEADRM MGF + I R Sbjct: 383 KALEQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRP 442 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA-LL 239 +QTLLFSAT I+ A +L DPV + + I Q + + K LL Sbjct: 443 DRQTLLFSATF-KKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLL 501 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 HL+K ++FV K+ +AN L N L G+M Q RN+ I + + Sbjct: 502 CHLVKFLSEGSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKEC 561 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++LVATDVAARG+DIP + +V N+D+ R DT+ HRIGRT RAG KG A +LV D Sbjct: 562 DILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEF 621 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 G + R +E + D + ++ + + K +E+ Sbjct: 622 AGHLVRNLEGADQQVPEDLMELAMKSSWFRSSRFKQGKGRKPANTYTGLGYRERGNG 678 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 157/445 (35%), Positives = 233/445 (52%), Gaps = 9/445 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT TTF L E L AL T PT IQ AIP AL GRD+LG A TGTGKTAA+ L Sbjct: 1 MTSTTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFAL 60 Query: 61 PALQHLLD-FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P L HL+ + + + LIL+PTRELA+Q+++ +L++ T + + GGV+ Sbjct: 61 PLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + + DI+VAT GRLL +++ D R LILDEADRMLDMGF +D+ I G+ Sbjct: 121 IQALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q+++FSAT+ I+D ++++L +P +VS P+ +KI Q + K L Sbjct: 181 DDRQSMMFSATMPKP-IEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKK-HWL 238 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + + + + R +VF R + + L + L +AGI + G Q R +A+ +G + Sbjct: 239 IDFVSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEI 298 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +VLVATD+ ARGI + D+SHV NFD+P ++Y+HRIGRTARAGR G AI+LV+ + Sbjct: 299 DVLVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAK 358 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK-- 417 L ++ + + + D + GK + + + Sbjct: 359 LKQIIKLTGIDLTPQATDYTVNVLAGELDADDGKRRGPRNQQPRNGRPRNRGKNGNGGRP 418 Query: 418 ----KRHRDTKNIGKRRKPSGTGVP 438 KR R +G P Sbjct: 419 NGGAKRQNAGGETANRSSQRPSGKP 443 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 151/440 (34%), Positives = 231/440 (52%), Gaps = 5/440 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS + +A+ ++ PT IQ IP L G+DVL SA TGTGKTAA+ LP L Sbjct: 1 MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60 Query: 64 QHLLDFPRKKSGP---PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + P+ K P +LIL+PTRELA Q+ + + +I ++ GGV+Y Sbjct: 61 NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQN 120 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++ N + +VAT GRL+ +K+ + + ++ L++DEADRMLDMGF DI+ I T Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q L+F+ATL I+ A++ L+DP ++ + K I Q Y D K +LV Sbjct: 181 DQQVLMFTATLNKQ-IEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLV 239 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L + + ++I+F + L++ L + L G+M Q +R I R + Sbjct: 240 DVLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQ 299 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGID+ D++HV NFD+PR + Y+HRIGRT RA RKG AISLV + +L Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFML 359 Query: 361 GKVGRYIEEPIKA-RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 K+ +Y I+ + + +K++G K+ + +K R K Sbjct: 360 QKIEKYANIKIEVIKSTHSTSDLSLVYKKKESGFKKKRRSSGSRKKNDKFTSSSKRKKHG 419 Query: 420 HRDTKNIGKRRKPSGTGVPP 439 + RR+P + P Sbjct: 420 FKADVKAKSRRRPVKKNIKP 439 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 168/461 (36%), Positives = 239/461 (51%), Gaps = 25/461 (5%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 TF++L + + +L AL+ G+T PT IQA AIP AL GRD+L SA TG+GKTAA+++P Sbjct: 42 NKVTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIP 101 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L L + LILTPTRELA QV D R +K L + GG Y Sbjct: 102 VLDRL-SRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQI 160 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + ++VAT GRLL +I D ++E L+LDEADRMLDMGFA DI I Sbjct: 161 TALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPI 220 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT++ SAT +G + A ++P VS + I + Y DD +HK LL Sbjct: 221 DRQTIMCSATWDGP-VGKIAASFTKNPERVSIKVESA---HIEEKVYYCDDFDHKNRLLD 276 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 ++ + + I+F + +LA L+EAG +L G++ Q KRN ++ L G+ Sbjct: 277 KIVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCK 336 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+P +SHV N+D+PR + Y+HRIGR RAGR G AISL D L Sbjct: 337 ILVATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQL 396 Query: 361 GKVGRYIEEPIKARVIDELRPK--------------TRAPSEKQTGKPSKKVLAKRAEKK 406 + RY++ ++A VI+ + PK G + + + A Sbjct: 397 NAINRYLDRKMEASVIEGMEPKKTYVPSENKGNGRGRGRGRSNGGGNGNGQGRGRSAGGY 456 Query: 407 KAKEKEKPRVKKRHR---DTKNIGKRRKPSGTG--VPPQTT 442 KP + R R D+ N +R + +G P+ + Sbjct: 457 AGSGASKPSGQGRGRPSGDSSNATGQRASNDSGYQGKPRDS 497 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 144/384 (37%), Positives = 203/384 (52%), Gaps = 7/384 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 FSE+ L + +L+AL D G+ PT IQA IP L GRD+LG A TGTGKTAA+ LP L Sbjct: 21 FSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSR 80 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHAEVFS 124 + K P++L+L PTRELA+QV++ + A + ++ + GG AY Sbjct: 81 I----DIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLK 136 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 ++V T GRL+ +K D + TL++DEAD ML MGF D+E I +T +Q Sbjct: 137 RGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQV 196 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ I+ A + L DP +V T I Q ++ HK L +L+ Sbjct: 197 ALFSATMPAP-IKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGT-HKLDALTRILE 254 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 IVFVR + ELA L G L G++ Q R I R +G++++LVA Sbjct: 255 AETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVA 314 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ VSHV N+D+P ++Y+HRIGRT RAGR G AI V + +L + Sbjct: 315 TDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIE 374 Query: 365 RYIEEPIKARVIDELRPKTRAPSE 388 + + I+ + Sbjct: 375 KTTRQQIEMMKLPSTEAINDKRIA 398 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 20/399 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F ++ + E ++ +Q +TRPT +Q AIP ++ RD++ A TG+GKTAA+LLP Sbjct: 220 IESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPI 279 Query: 63 LQHLLDFPR--------------KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIA 108 L + ++ P L+L PTRELA+Q+ + AR+ A + + Sbjct: 280 LSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPC 339 Query: 109 TITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFA 168 + GG ++VAT GRL+ ++ + L+LDEADRMLDMGF Sbjct: 340 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 399 Query: 169 QDIEHIAGE--TRWR--KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ 224 I I + + +QT++FSAT + IQ A L++ + ++ + I Q Sbjct: 400 PQIRRIVEQDTMPPKGVRQTMMFSATFPKE-IQILARDFLDEYIFLAVGRVGSTSENITQ 458 Query: 225 WYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 284 ++++ ++ LL L + + ++VFV ++ L ++L G + G+ Q Sbjct: 459 KVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQ 518 Query: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344 R EA+ + G+ +LVAT VAARG+DI +V HV NFD+P + Y+HRIGRT R G Sbjct: 519 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 578 Query: 345 KGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKT 383 G A S + + + + K V L Sbjct: 579 LGLATSFFNEKNINITKDLLDLL-VEAKQEVPSWLENMA 616 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 217/403 (53%), Gaps = 6/403 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L + S++EA++ GF T IQ IP +G+D++G A TGTGKT A+ +P Sbjct: 1 MALFKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPC 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ + P+ L+LTPTRELA+QV++ +L + + I GG Sbjct: 61 VEQVV----VEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + I+VAT GR + +++ + ++ ++LDEAD ML MGF +DIE I E + Sbjct: 117 LKKRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ ++ A+R + PV ++ + I Q Y + E K L +L Sbjct: 177 QTLLFSATMP-PKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKE-KFDTLCNL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L +I+F R + RV EL L G L G+M Q +R++ I++ G ++V+ Sbjct: 235 LDMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ DVSHV NFD+P+ ++Y+HRIGRT RAG+KG + S V + L Sbjct: 295 VATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRY 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 + + +K L R ++ + K V +++ Sbjct: 355 IEESTRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQ 397 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 140/404 (34%), Positives = 215/404 (53%), Gaps = 6/404 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF ELEL+E ++ A+ +KG+ PT IQ+ AIP L D+L + TGTGKTAA+ LP Sbjct: 15 KLMTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLP 74 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L L P K LIL PTREL MQV++ R +K+ ++IA + GG Sbjct: 75 MLS--LTQPGDKKR-TNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQI 131 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 DIVVAT GRL+ +I+ + ++LDEAD ML+MGF +DIE I Sbjct: 132 RDLKRGADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPE 191 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q FSAT+ + + +E+ L +P ++ + + +I Q YY + K L + Sbjct: 192 ERQFAFFSATMPKEIV-KLSEKFLVEPERITLSRNNLTVSRIKQIYYTV-ESRDKVDLTI 249 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL+ + + +++F ++ V EL L +AG L G+M Q R+ + R +G V+ Sbjct: 250 QLLQLHKTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVS 309 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VL+ATDVAARGID+ + V N+D+P+ + Y+HRIGRT RAG++G AI+LV + Sbjct: 310 VLIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAI 369 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 ++ R I + ++ + K ++ + Sbjct: 370 KQIERLSNSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGK 413 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 145/465 (31%), Positives = 214/465 (46%), Gaps = 30/465 (6%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V+ F+E+ L E L + ++ + +PT IQ AIP A+ GRD++ A TG+GKTAA+ P Sbjct: 419 PVSAFAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFP 478 Query: 62 ALQHLLDFPRKKSGP----PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 + +L + G P LIL+PTREL+ Q+ + A++ + T L + GG Sbjct: 479 IICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPIS 538 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 DI+VAT GRL+ I+ R ++ L LDEADRMLDMGF I I + Sbjct: 539 QQFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQ 598 Query: 178 T----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE 233 +QT+LFSAT + IQ A L + + +S I Q +D + Sbjct: 599 MDMPPPGARQTMLFSATFPNE-IQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTD 657 Query: 234 HKTALLVHLLKQPEATRS-------IVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 286 + L+ LL+ R+ +VFV + V L WL G+ + G+ VQ + Sbjct: 658 KRYH-LMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQME 716 Query: 287 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 346 R A+K G ++VATDVAARG+DIP V+HV NFD+P++ D Y+HRIGRT RAG+ G Sbjct: 717 RERALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSG 776 Query: 347 TAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKK 406 A + + L + ++E V L PS + + Sbjct: 777 LATAFFNDGNLSLAKSLVELMQES-NQEVPSWLNQYAERPSYGGGRSRYGGGRFGGHDFR 835 Query: 407 KAKEKEKPRVKKRH------------RDTKNIGKRRKPSGTGVPP 439 + + ++ G P G PP Sbjct: 836 SSSQLKREDYYSPSPYGDVTQTDVFVAPASGEGYYSIPYGEAAPP 880 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 161/433 (37%), Positives = 232/433 (53%), Gaps = 8/433 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FSEL L E +L A+ G+T PT IQA AIP L RDVLG A TGTGKTAA+ LP L Sbjct: 64 MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 LL+ R ++ PR LIL PTRELA QV ++ K+ L++A + GGV++ + Sbjct: 124 T-LLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKL 182 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+++AT GRLL +++ +E L++DEADRMLDMGF DIE I + +Q Sbjct: 183 LRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 242 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE-HKTALLVHL 242 TL FSAT+ + IQ + L +PV V + I Q + + K L L Sbjct: 243 TLFFSATMPPE-IQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLREL 301 Query: 243 LKQPEA-TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + IVF ++ V + L++ G N L G+M Q R +A+ + G + Sbjct: 302 IRNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATL 361 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVA+DVAARG+DIP VSHVFN+D+P + Y+HRIGRT RAGR GTAI LV D L Sbjct: 362 LVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLA 421 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I I + P AP ++ + + + ++ K + R +++ Sbjct: 422 AIEKLIGNAIPWQ----GEPLGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERKAE 477 Query: 422 DTKNIGKRRKPSG 434 + R + + Sbjct: 478 VEDGVEVRAERAP 490 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 559 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 132/435 (30%), Positives = 202/435 (46%), Gaps = 14/435 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL+LD ++ + + RPT IQ AIP L+ RD++ A TG+GKTAA+L+P Sbjct: 183 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 242 Query: 63 LQHL-----LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYM 117 + HL K+ P+ LIL PTRELA+Q+ +++ + +T L + GG Sbjct: 243 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 302 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA-- 175 + ++VAT GRL+ +I++ + ++LDEADRMLDMGF I I Sbjct: 303 SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 362 Query: 176 GETRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLE 233 +QTL+FSAT + IQ A L + + ++ I Q D+E Sbjct: 363 SNMPSGINRQTLMFSATFPKE-IQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVE 421 Query: 234 HKTALLVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 K L ++ ++FV ++ LA +L G + G+ Q +R A+ Sbjct: 422 -KLNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALS 480 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 G+ +LVAT VAARG+DIP+V HV N+D+P + Y+HRIGRT R G G A S Sbjct: 481 MFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFY 540 Query: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++ + + ++E V L T + K +R K Sbjct: 541 VDKNNNIAIDLVDLLKEA-NQIVPQWLSALADELKRNSTMGSNNKRHNQR-RYKNGNFGG 598 Query: 413 KPRVKKRHRDTKNIG 427 + + N G Sbjct: 599 RDYRQGPSNVNMNSG 613 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 559 bits (1441), Expect = e-158, Method: Composition-based stats. Identities = 157/445 (35%), Positives = 237/445 (53%), Gaps = 19/445 (4%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+TTF +L L + +L+AL KG+ PT IQA AIPP L+GRD+LG A TGTGKTAA++L Sbjct: 1 MTITTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFML 60 Query: 61 PALQHLLDFPRKKS-GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P++ L + + R+L+L PTRELA Q++ A++ L + +I GG + Sbjct: 61 PSIDRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKD 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 DI+VAT GRLL I ++ F AVE L+LDEAD+MLD+GF + I Sbjct: 121 RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QTL FSAT+ IQ+ + +PV+VS P+ ++I Q+ + + K AL+ Sbjct: 181 AERQTLFFSATMPKQ-IQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQ-DEKQALI 238 Query: 240 VHLLKQP-----EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 +LK + R +VF R + + LR+AGI + + G Q +R A+ Sbjct: 239 EMILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEF 298 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 + +L+ATDVAARGIDIP VSHV N+++P + Y+HRIGRTARAG+ G AI+ Sbjct: 299 KRAKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAE 358 Query: 355 HDHLLLGKVGRYIEEPIKARVIDE-LRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 + L + + + + E R + + +++ + K K Sbjct: 359 DERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTK----------REQKQRGPRIKPK 408 Query: 414 PRVKKRHRDTKNIGKRRKPSGTGVP 438 P+ +K+ ++ + P G P Sbjct: 409 PKARKQGGTNRSKPQGGNPQSAGGP 433 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 152/411 (36%), Positives = 219/411 (53%), Gaps = 7/411 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T F+ L L E LL A+ ++ + PT IQA +IP L+G D++G A TGTGKTAA++LP Sbjct: 56 LTDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPI 115 Query: 63 LQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 L + R R L+L PTRELA Q++D AR K T +A + GG A Sbjct: 116 LHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQAR 175 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D++VAT GRLL ++ AVET++LDEAD+MLD+GF I I + + Sbjct: 176 RMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQ 235 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q ++FSAT+ I+ A L DP EV+ + ++ +I Q E K L Sbjct: 236 RQAVMFSATMPKP-IRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDK-LAW 293 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 LL R+IVF R + ++ L +AGI + G QG+R A+ + GR+ V Sbjct: 294 LLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRV 353 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+AARGID+ +VSHV NF++P ++Y+HRIGRTARAG +G AISLVE + L Sbjct: 354 LVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLR 413 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 + I ++ R + + +V + K+ + Sbjct: 414 DIETLIG----RHLVPGGAQPVRGLAPPHLLRARNQVARQGQMPKRNGPPK 460 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 557 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 137/407 (33%), Positives = 214/407 (52%), Gaps = 6/407 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALD-GRDVLGSAPTGTGKTAAYLLPALQ 64 F + L E +L A+Q KG+ +PT IQ +P AL +D++ A TGTGKTAA+ +P L+ Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 + K + +I+TPTRELA+Q+ + + L + I T+ GG + + Sbjct: 80 RIDFKANK---FVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLE 136 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + DIVV T GR++ ++ + D VE L+LDEADRMLDMGF D+ I T K+T Sbjct: 137 KGVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRT 196 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ + + A + +++ + VS + Q Y+ D+ + K LL ++ Sbjct: 197 FLFSATMPKEIVD-IARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKD-KLPLLCRIID 254 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 IVF + + V E++ L + G N L G+ Q +R + + + ++ +LV Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGIDI ++HV N+ +PR + Y+HRIGRT RAG+KG AI+ V D+ +V Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 R+ + I I ++ EK K+A ++ Sbjct: 375 RFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQ 421 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 557 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 149/407 (36%), Positives = 220/407 (54%), Gaps = 7/407 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ F+EL L E LL+AL+D G+ P+ IQAA IPP L GRDVLG A TGTGKTAA+ LP Sbjct: 6 ISPFAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPI 65 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAE 121 L + R + L+L PTRELA+QV++ A H ++ I GG +Y+ Sbjct: 66 LAKIDCNAR----HTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLA 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VV T GR++ +++ + ++LDEAD ML MGF D+E I +T + Sbjct: 122 SLKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQ 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +Q LFSAT+ AI+ A+ L DP E++ +T I Q Y+ L HK L Sbjct: 182 RQVALFSATMPS-AIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGL-HKLDALTR 239 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +L+ I+F R ++ ELA L G L G++ Q R ++RL +G++++ Sbjct: 240 ILEVEPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDI 299 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI V + LL Sbjct: 300 LVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLR 359 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 + R +PI + + + + ++ + E + Sbjct: 360 AIERATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQR 406 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 557 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 138/389 (35%), Positives = 208/389 (53%), Gaps = 7/389 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F +L+L + +A+ G+ +PT IQA IP LDGRDVL + TGTGKTAA+ LP L Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFS 124 + +S P++L+L PTRELA+QV+ + +A I GG Y + Sbjct: 366 V----DVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLR 421 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VV T GR++ ++K D +++ L+LDEAD ML+MGF +D++ + ++ +Q Sbjct: 422 RGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV 481 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSATL I+ A+ L DP ++ T + Q + K L +L+ Sbjct: 482 ALFSATLPKP-IRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRD-KIDALTRILE 539 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 E IVF + ++ +A L + G + L G+M Q R I +L G+++VLVA Sbjct: 540 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+P +SHVFNFD+P ++Y+HRIGRT RAGR G AI + L + Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGK 393 ++PI+ I + A + + Sbjct: 660 NTTKQPIEIIDIPTVADINEARVRRFKQR 688 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 557 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 207/379 (54%), Gaps = 10/379 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF+EL + E++L A+ + G+ + T IQA AIP ++G+DVLG + TGTGKTAA+ +PA Sbjct: 1 MTTFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPA 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAE 121 ++ + + + LI+ PTREL QV+ R+ +K+ + I I GG + Sbjct: 61 IEMVQPQDKYAN----ALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQ 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + IVV T GR++ +++ + +ILDEAD ML+MGF +DIE I Sbjct: 117 LLKRGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSE 176 Query: 182 K--QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 + QT+LFSAT + I A+ DPV V + R + Q YY K L Sbjct: 177 RSYQTILFSATWPSE-IMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRG-KKANAL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL + ++F ++ V EL L + I C L G+M Q R+ +++ G + Sbjct: 235 RVLLNHYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSM 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHL 358 +L+ATDVAARGID+ DV V NFD+P+ + Y+HRIGRT RAG+KG AI+L+ Sbjct: 295 PILIATDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRS 354 Query: 359 LLGKVGRYIEEPIKARVID 377 L + RY + IK + Sbjct: 355 ELKNIMRYTKTNIKHHALP 373 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 154/434 (35%), Positives = 229/434 (52%), Gaps = 7/434 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F + D ++ + G+ PT IQ AIP L GRDV+G A TGTGKTAA+ LP + Sbjct: 1 MSFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q LL+ GP R+L+L PTRELA+Q+ ++ EL + A + GGV M + Sbjct: 61 QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQA- 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + ++VA GRLL + + V+TL+LDEADRMLDMGF DI I + R+Q Sbjct: 120 ARRSSVIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT+ D I+D A+++L P V +T K + +Y K LL +L Sbjct: 180 NLLFSATMPDD-IRDLADKILYRPATVQV-ANTAPAKTVEHVFYPVSQH-LKNNLLFKVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +Q + +VF R + + LA L G +L+G M Q +R A+ +G V+V Sbjct: 237 EQTDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID ++HV N D+P + +TY HRIGRT RAGR G+A S V D L+ ++ Sbjct: 297 ATDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + + I+ R +++ + K A +K + +P ++ + Sbjct: 357 EKAVGYSIEHRTLEDFDY---DKPNTHPAPAKRGGGRKPAADRKPAGERRPGRGRKPAEA 413 Query: 424 KNIGKRRKPSGTGV 437 ++ + RKP+G Sbjct: 414 RDGDESRKPAGERK 427 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 152/452 (33%), Positives = 220/452 (48%), Gaps = 12/452 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 +T+ F E L AL G+ PT IQ A+PP L+GRD+LG A TG+GKTA ++L Sbjct: 23 LTIENFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVL 82 Query: 61 PALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH 119 P LQ + L+L PTRELA+Q+ LA++ + A + GGV+ Sbjct: 83 PLLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQ 142 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++VAT GRLL I D VETL+LDEADRM DMGF +DI+ I Sbjct: 143 INALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLP 202 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++T LFSAT+ + I+ FA +L++P V + + +I Q E K + L Sbjct: 203 EARRTALFSATMPVE-IKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTE-KQSRL 260 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L R IVF R + +A L AGI+ G Q R A+ G + Sbjct: 261 HTILADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHI 320 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ +++HV NFDMP +TY+HR+GRTAR G G AISL + + Sbjct: 321 RVLVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQE 380 Query: 360 LGKVGRYIEEPIKAR--------VIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 + + R +++ ++ + E R RA + + + A + + Sbjct: 381 ITAIERMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHHHAGGRRDGREGGQ 440 Query: 412 EKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTE 443 R + HR+ P+ G + E Sbjct: 441 RGERPARPHRNGDERAN-ASPARNGENRRPYE 471 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 146/406 (35%), Positives = 218/406 (53%), Gaps = 9/406 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+TTF++L L E++L A+ + GF PT IQ AIP L+GRD++G A TGTGKTAA+ LP Sbjct: 3 TMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L H+ + ++L PTRELAMQ + A H + + T+ GG +Y Sbjct: 63 MLAHI----DPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQI 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +VV T GR++ I++ V L+LDEAD ML MGFA+D+E IA Sbjct: 119 KGLKSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPE 178 Query: 181 --RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 ++ T LFSAT+ D IQ A++ L DPV + + + IHQ Y +HK Sbjct: 179 SGKRITALFSATMP-DFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVV-PFKHKLGA 236 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L +L + +IVFVR R E+A + G + G++ Q +R + RL +G Sbjct: 237 LGRVLATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGS 296 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++VLVATDVAARG+D+ + V NFD+PR + Y+HR+GRT RAGR G +++ + Sbjct: 297 LDVLVATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQF 356 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 L ++ + ++ VI R + + + ++ R E Sbjct: 357 RLRQIEKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLE 402 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 143/431 (33%), Positives = 221/431 (51%), Gaps = 8/431 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V T E E E + K FT P+ IQA A P L GRD++G A TG+GKT AY+LP Sbjct: 92 PVLTLDECNFPEPCRELFRSKNFTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYVLP 151 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHAREL-AKHTHLDIATITGGVAYMNH 119 A H+ D P+ + P ++L PTREL Q+S A E L A + GGV+ Sbjct: 152 AAIHMSDQPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQ 211 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 I +AT GRLL ++ + L+LDEADRMLDMGF I I +TR Sbjct: 212 IARLQGGAHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTR 271 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTR-ERKKIHQWYYRADDLEHKTAL 238 +QT+++SAT + ++D AE L D V+++ I Q + E + L Sbjct: 272 PDRQTVMWSATWPSE-VRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKL 330 Query: 239 LVHL--LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L L + R+++FV + RV + L + G G++ Q KR+ A+ R Sbjct: 331 LETLREINAEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRS 390 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G+ +LVATDVAARG+D+ D+ +V N+D P + ++Y+HRIGRT R+ R GTAI+L + Sbjct: 391 GKTPILVATDVAARGLDVSDIKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDN 450 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 ++ ++E + + L R S+K + ++ A+++ ++ + ++ R Sbjct: 451 AGQAKQLVSVLQEAKQEVNPELLELVDRQVSQKFANR--RRRPAQQSWDRRPQHRQGDRF 508 Query: 417 KKRHRDTKNIG 427 ++T+ G Sbjct: 509 GDYAQETRGWG 519 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 147/399 (36%), Positives = 223/399 (55%), Gaps = 10/399 (2%) Query: 1 MT--VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAY 58 MT + +F++L+L LL+AL + G+ P+ IQA IP L G D+LG A TGTGKTAA+ Sbjct: 39 MTSPIESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAF 98 Query: 59 LLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYM 117 LP L L P++L+L PTRELA+QV++ + AK+ + + GG + + Sbjct: 99 ALPLLDRL----DLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMV 154 Query: 118 NHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 + ++V T GR++ +I+ ++ + ++ TL+LDEAD ML MGF D+E I Sbjct: 155 VQLRQLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQH 214 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 T +QT LFSAT+ DAI+ A R L +P EV ST Q Y + + HK Sbjct: 215 TPAERQTALFSATMP-DAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQIS-VAHKLD 272 Query: 238 LLVHLLK-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L +L+ + + +I+FVR + ELA+ L G + L G+M Q R I++L Sbjct: 273 ALTRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKG 332 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G+++++VATDVAARG+D+ +SHV N+D+P + Y+HRIGRT RAGR G+AI V + Sbjct: 333 GQLDIVVATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPRE 392 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPS 395 +L + R +PI+A + + + Sbjct: 393 MRMLKVIERATRQPIEALQLPSREAVADKRVAAFRQQVA 431 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 136/427 (31%), Positives = 219/427 (51%), Gaps = 13/427 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ +F E + + + L F +PT +Q +IP + GRD++ A TG+GKTAA+LLP Sbjct: 350 SIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLP 409 Query: 62 ALQHLLDFPRKKS-----GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116 L ++ S P+ L++ PTRELA+Q+ + AR+ + T L + GG + Sbjct: 410 VLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSV 469 Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176 + IVV T GRL+ I + ++ LILDEADRMLDMGF DI+ I Sbjct: 470 GYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVH 529 Query: 177 ET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDL 232 E + +QTL+FSAT + IQ A L D + ++ + Q +++ D Sbjct: 530 ELGTPEKTERQTLMFSATFP-EEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDR- 587 Query: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 + K L +L + A +++VFV ++ LA++L E+G + G+ +Q +R EA++ Sbjct: 588 QQKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALR 647 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 +G+ +L+AT VAARG+DIP+V HV N+D+P+S D Y+HRIGRT R G G A S Sbjct: 648 DFKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFF 707 Query: 353 EAH-DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 D L + R + + + D L ++ + + + K + + + Sbjct: 708 SEDGDGSLAKPLMRIL-VDAQQNIPDWLEASGQSSMSSGSYSGGGRFGGRDIRKDQERTR 766 Query: 412 EKPRVKK 418 E + Sbjct: 767 EHAGNGQ 773 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 134/406 (33%), Positives = 219/406 (53%), Gaps = 8/406 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F+EL + +L A+ D G+ +P+ IQ +IP L+G D++G + TG+GKTAA+ +P + Sbjct: 1 MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEV 122 +++ G + LIL PTREL +QVS +L K+ + I ++ GG + + Sbjct: 61 ENIEAN-----GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKS 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + +IVV T GRL+ ++ + ++T++LDEAD M DMGF D++ I T + Sbjct: 116 LKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNR 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT FSAT+ G IQ+F++ +P EV +I Q+Y + + K L+ L Sbjct: 176 QTCFFSATM-GPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKES-MKEEALMRL 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ +A +IVF + +V L L + L G++ Q R++ +K+ + +L Sbjct: 234 LEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATD+AARG+D+ DV VFN+D+P+ + Y+HRIGRTARAG+ G + SL+ D+ L + Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 + Y + IK + L R + S K+ ++ Sbjct: 354 IENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREK 399 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 123/420 (29%), Positives = 201/420 (47%), Gaps = 24/420 (5%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAA-------------------AIPPALDGRDVL 45 ++E + + ++ ++D F+ P IQA P L G D++ Sbjct: 195 KWNETKFPKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVLSGHDLI 254 Query: 46 GSAPTGTGKTAAYLLPALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTH 104 G A TG+GKT +++LPAL H+ K G P L+L PTRELA Q+ + + Sbjct: 255 GIAQTGSGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKCK 314 Query: 105 LDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLD 164 + + GG + + DIV+AT GRL+ +++ D + V L+LDEADRMLD Sbjct: 315 ISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRMLD 374 Query: 165 MGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLE-DPVEVSANP-STRERKKI 222 MGF I I G+ R +QTL+FSAT ++ A DP+ + I Sbjct: 375 MGFEPSIRKIVGQIRPDRQTLMFSATWPQ-TVRRLALDFCHGDPIHIQIGDMENNVNNDI 433 Query: 223 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEM 282 Q D + + L + ++I+F + ++ +L+ L+ I N + G+ Sbjct: 434 DQQVEIIDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDK 493 Query: 283 VQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA 342 Q R++ + GRVN L+ATDVA+RG+D+ D+ V N+D P+ + Y+HR+GRT RA Sbjct: 494 SQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGRTGRA 553 Query: 343 GRKGTAISLVEA-HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 G +G AIS ++ D + ++ +++ + D L + +K +K Sbjct: 554 GAQGKAISFLDQYEDKKISKELVDVLKQNNQEISQDLLELSEANYKGNYSNNYNKNRSSK 613 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 134/390 (34%), Positives = 194/390 (49%), Gaps = 17/390 (4%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V TF+E++L E+L +Q + +PT +Q AIP GRD++ A TG+GKTAA+ P Sbjct: 144 PVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFP 203 Query: 62 AL------QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVA 115 + QH+ + P +IL+PTRELA Q+ D AR+ + T + + GG Sbjct: 204 IISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTP 263 Query: 116 YMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIA 175 DI+VAT GRL ++ + V L LDEADRMLDMGF I I Sbjct: 264 VNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIV 323 Query: 176 GET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADD 231 + +QT+LFSAT + IQ A L + + ++ I Q D Sbjct: 324 QQMDMPPPGVRQTMLFSATFPRE-IQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHD 382 Query: 232 LEHKTALLVHLLKQPEATR------SIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 + ++ L+ L Q E ++VFV ++ L NWL G + G+ Q Sbjct: 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQ 442 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 +R A++ GR +LVATDVAARG+DIP V+HV NFD+P D Y+HRIGRT RAG Sbjct: 443 EREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNS 502 Query: 346 GTAISLVEAHDHLLLGKVGRYIEEPIKARV 375 G A + ++ + + ++E + Sbjct: 503 GLATAFFNDNNTTMAKPLAELMQEANQEVP 532 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 164/455 (36%), Positives = 234/455 (51%), Gaps = 16/455 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ TF +L L E L A+ G+T PT +Q AIP L GRDV+ +A TGTGKTAA+ L Sbjct: 1 MS-KTFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P + L P +LI+TPTRELA+Q+ R +AK + + + GGV+Y Sbjct: 60 PTMDRLGHARH--GQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQI 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + D+++AT GRL+ + ++ VETL+LDEADRMLDMGF D+ I Sbjct: 118 DSLRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPT 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QTLLFSAT++ AI+D LL +PV V I Q+ D HK LL+ Sbjct: 178 QRQTLLFSATIDS-AIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDH-RHKNDLLI 235 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL + TR IVF R R RV LR+AG + + Q +R AI+ L G+ + Sbjct: 236 ALLNERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCD 295 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDV ARGIDIP+V++V N DMP + Y+HRIGRT RAG G AIS V + +L Sbjct: 296 ILVATDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAIL 355 Query: 361 GKVGRYIEEPIKARVIDELRPK-------TRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 + + I + I ++ +A P A+ + +K + + Sbjct: 356 RDIQKLIGKDIPEMSVESFDSSASDNALAAKATRANAQNDPELATAAREDKSRKKAKSSR 415 Query: 414 PRVKKRHRDTKNIG----KRRKPSGTGVPPQTTEE 444 ++ + + + G + P G +E Sbjct: 416 SSRREHNTEDQRAGGQQRGHKNPRGNKSNRNNSER 450 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 150/436 (34%), Positives = 222/436 (50%), Gaps = 5/436 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L L L A+++ G+T PT IQ AIP GRDVLG A TGTGKTA++ LP + Sbjct: 1 MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 +L + K+ PR LIL PTRELA QVS++ K+ L +A + GG + +V Sbjct: 61 D-ILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D+++AT GRL+ + + R V+ L++DEADRMLDMGF D+E I +Q Sbjct: 120 DRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TL FSAT++ + I+ A+ L +P EV P+ + + + Q E K L LL Sbjct: 180 TLFFSATMDKE-IRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASE-KREALRQLL 237 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ T + +F ++ V L L G + L G+M Q R E +++ V ++V Sbjct: 238 RRETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMV 297 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 +DVAARGID+ +VSHVFNFD+P + Y+HRIGRT RAGR G A +L D L + Sbjct: 298 CSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAI 357 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + + I +L A + KR K + + + + Sbjct: 358 ENLLGKTIPPD--PQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAE 415 Query: 424 KNIGKRRKPSGTGVPP 439 + + + P Sbjct: 416 RPRPLAPERAANDQAP 431 >UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE68 Length = 755 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 138/453 (30%), Positives = 219/453 (48%), Gaps = 38/453 (8%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF E +++ ++ +GF +PTAIQA P AL GRD++G A TG+GKT AY LPA Sbjct: 143 QTFEESNFPANVMAVIKKQGFLKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYALPAT 202 Query: 64 QHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 H+ + P K P L+L PTRELA Q+ A++ + I GG + A Sbjct: 203 VHITNQKPLSKGDGPIALVLAPTRELAQQIQSVAKDFGASCSIRNTCIFGGAPKGSQARD 262 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +IV+AT GRL+ ++ + + R L+LDEADRMLDMGF I I + R + Sbjct: 263 LERGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 322 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVH 241 Q L++SAT + +Q AE L D ++++ + I Q D E K L + Sbjct: 323 QVLMWSATWPKE-VQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEVMQDSE-KEGRLTN 380 Query: 242 LLKQPEATR---SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 LL+ R ++FV +++V ++A +++ G + G+ Q +R+ + G+ Sbjct: 381 LLRDIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEFRSGK 440 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 VLVATDVAARG + H Y+HRIGRT R+ + GTA + + Sbjct: 441 CAVLVATDVAARG----KIRH------------YVHRIGRTGRSSQMGTAFTFFTPQNAR 484 Query: 359 LLGKVGRYIE---EPIKARVIDELRPKTRAPSEKQTG---------KPSKKVLAKR---A 403 + +E +PI +V + L T+ P+ + T +P+ VL + + Sbjct: 485 QAKGLVAVLEEASQPINPKVTELLAATTKGPTPEPTNNYGNINQIWQPNSPVLPQENHYS 544 Query: 404 EKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTG 436 K + + E + H +T + ++ P+ Sbjct: 545 GKYRTVQNENGFKGRMHNNTGSEIYQKIPTRIS 577 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 139/412 (33%), Positives = 230/412 (55%), Gaps = 7/412 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + T F+ L L +LL A++++G+ +P+ IQ +IP L+G+DVLG A TGTGKTAA+ LP Sbjct: 4 SSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLP 63 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 L + + P++L+L PTRELA QV+ +KH +++ +A+I GG + + Sbjct: 64 LLAR----TQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQF 119 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + VV T GR++ +I+ + ++LDEAD ML MGF D++ + + Sbjct: 120 RALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPE 179 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LFSAT+ I+ AE+ L +P E+ T + I Q Y+ ++ K L+ Sbjct: 180 KRQIALFSATMPKQ-IKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVD-KNQALL 237 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + + E +VFVR ++ E+A+++R G+ L G++ Q +R A+ RL +G+V+ Sbjct: 238 RICETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVD 297 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G AI V + +L Sbjct: 298 MLVATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRML 357 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 + R + I+ + + ++ + + + + E K E Sbjct: 358 STIERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASE 409 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 145/388 (37%), Positives = 207/388 (53%), Gaps = 6/388 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++ L L+ L GF++PT IQ AIP L G D++G A TGTGKTAA+ LP L + Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + + L+L PTRELA QV D + ++ + GG +Y Sbjct: 117 IDF----SKKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRR 172 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +VV T GRLL I++ + ++TL+LDEAD ML MGF DIE I +T +QT+ Sbjct: 173 GARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTM 232 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSATL + A R L P +S +P I Q YY ++ + K A + + + Sbjct: 233 LFSATLSS-RVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSD-KIAAITRVFEV 290 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 +++F R R V ELAN L G L G++ Q R + R +G++ VLVAT Sbjct: 291 ETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVAT 350 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+DI D+SHVFN+D+P + Y+HRIGRT RAGR GTAISLV D + ++ + Sbjct: 351 DVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQ 410 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGK 393 Y + + + + + + + Sbjct: 411 YTGKKLIKGELPTVEQIEEHRNTQFLER 438 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 125/441 (28%), Positives = 209/441 (47%), Gaps = 25/441 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T+F +++L E + ++ + +PT +Q AIP L GRD++ A TG+GKTAA+L+P Sbjct: 266 ITSFDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPI 325 Query: 63 LQHLLDFP-----------RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATIT 111 L +L+ +++ P L+L PTRELA Q+ + A++ + + + A + Sbjct: 326 LNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLY 385 Query: 112 GGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDI 171 GG ++VAT GRL I + L+LDEADRMLDMGF I Sbjct: 386 GGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQI 445 Query: 172 EHIAGE--TRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY 227 HI ++QTL+FSAT + IQ+ A L + + ++ + I Q Sbjct: 446 RHIIENRDMPPTGQRQTLMFSATFPKN-IQELASDFLSNYIFLAVGRVGSTSENITQTIL 504 Query: 228 RADDLEHKTALLVHL--LKQPEATR-----SIVFVRKRERVHELANWLREAGINNCYLEG 280 ++ E ++ LL L L++ +++FV ++ L +L + + G Sbjct: 505 WVNENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHG 564 Query: 281 EMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTA 340 + Q +R +A+K G +LVAT VAARG+DIP V HV N+D+P + Y+HRIGRT Sbjct: 565 DRSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTG 624 Query: 341 RAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV--IDELRPKTRAPSEKQTGKPSKKV 398 R G G A S + ++ + + E + ++E+ + Sbjct: 625 RMGNLGIATSFFNEKNRNIVSDLVELLIETNQELPSFLEEMANDRYGGPRRSNNSRGGGN 684 Query: 399 LAKRAEKKKAKEKEKPRVKKR 419 +++ +P+ +R Sbjct: 685 RYGGGTAFGSRDYRQPQSNQR 705 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 206/377 (54%), Gaps = 7/377 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ FS +L +AL+D F P+ IQA IP L GRD + A TGTGKTAA+ LP Sbjct: 4 EISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALP 63 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHA 120 LQ+L + + LIL PTRELA+QV++ L+K+ ++ IA + GG Y Sbjct: 64 ILQNLS----PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQL 119 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +VV T GR+L +I + ++T ILDEAD ML MGF +D+E I + Sbjct: 120 KQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPE 179 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +KQ LFSAT+ I+ A L DP + T K I Q + A + K L+ Sbjct: 180 KKQMALFSATMPY-RIRQIANTYLNDPASIEIRMETATVKSIEQRFLFAS-VHQKPDALI 237 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + IVFVR + E+A L++ G+ + G++ Q R I + +G ++ Sbjct: 238 RVLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAID 297 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ V+HV N+DMP +TY+HRIGRT RAGR G I V + L+ Sbjct: 298 ILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLI 357 Query: 361 GKVGRYIEEPIKARVID 377 + R+ + I+ + Sbjct: 358 SSIERHTRQRIEKVQVP 374 >UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 Tax=Eumetazoa RepID=DDX46_DANRE Length = 1018 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 135/429 (31%), Positives = 205/429 (47%), Gaps = 8/429 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + T+ + + +L AL+ + +PT IQA AIP + GRD++G A TG+GKT A+LLP Sbjct: 338 PIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLP 397 Query: 62 ALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 +H+LD P ++ P +I+TPTRELA+Q++ ++ +K L + + GG Sbjct: 398 MFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQI 457 Query: 121 EVFSENQDIVVATTGRLLQYI---KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +I+V T GR++ + + R V +++DEADRM DMGF + I Sbjct: 458 AELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDN 517 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QT++FSAT ++ A R+L PVEV + + Q ++ + Sbjct: 518 VRPDRQTVMFSATFPR-TMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLK 576 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL L E I+FV K+E L L +A L G + Q R+ I G Sbjct: 577 LLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNG 636 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 +LVAT VAARG+D+ + V N+ P + Y+HR GRT RAG KG A + + Sbjct: 637 ACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQA 696 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQ--TGKPSKKVLAKRAEKKKAKEKEKPR 415 G + + +E + V EL E+Q GK K + K E E Sbjct: 697 RYSGDILKALELS-GSSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKFDETEHAL 755 Query: 416 VKKRHRDTK 424 +R + K Sbjct: 756 ANERKKLQK 764 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 125/397 (31%), Positives = 204/397 (51%), Gaps = 18/397 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F+E +++E + G+++PT +Q +IP L RD++ A TG+GKTAA+LLP Sbjct: 138 IEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPI 197 Query: 63 LQHLLDFPR-----------KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATIT 111 +QH+L +++ P L+L+PTRELA+Q+ A + + +++ A + Sbjct: 198 IQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILY 257 Query: 112 GG-VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 GG Y + I++AT GRL+ I++ L+LDEADRMLDMGF Sbjct: 258 GGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQ 317 Query: 171 IEHIAGE-TRWR--KQTLLFSATLEGDAIQDFAERLLE-DPVEVSANPSTRERKKIHQWY 226 I I G+ + + T +FSAT + IQ A+ L+ + + ++ + I Q Sbjct: 318 IRKIVGQGMPPKTARTTAMFSATFPKE-IQVLAKDFLKDNYIFLAVGRVGSTSENIEQRL 376 Query: 227 YRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 286 +++E ++ L+ L+ + +VFV + +ELA +L I + + G++ Q + Sbjct: 377 LWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIE 436 Query: 287 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 346 R ++ G+ +LVAT VAARG+DIP+V HV N+D+P D Y+HRIGRT R G G Sbjct: 437 RERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLG 496 Query: 347 TAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKT 383 A S + + + I E V + L Sbjct: 497 IATSFFNDKNRGIGRDLKNLIVES-NQEVPEWLHQVA 532 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 164/458 (35%), Positives = 239/458 (52%), Gaps = 22/458 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF++L L LL+A++D G+T PTAIQA AIP L +D++G A TGTGKTA+++LP + Sbjct: 36 MTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMI 95 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 ++ R+++ PR LIL PTRELA QV+++ + + L +A + GGV + + Sbjct: 96 D-VMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTL 154 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E D+++AT GRL+ + E L++DEADRMLDMGF DIE I + +Q Sbjct: 155 DEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQ 214 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ I+ A++ L +P + + K I + K L LL Sbjct: 215 TMLFSATMPAP-IEKLAKKFLSNPKRIETTRAATTNKDITAFKVPV-KARQKRDTLEWLL 272 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +I+F ++ V EL L+ G + + G+M Q R + + R G VN+LV Sbjct: 273 ANDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILV 332 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 A+DVAARG+DI VSHVFNFD P D Y+HRIGRT RAG KG A +LV D + V Sbjct: 333 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANV 392 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK------------------ 405 + IK +++R + S K TG + K AEK Sbjct: 393 EKLTGAKIKVFGKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDAPRK 452 Query: 406 -KKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTT 442 ++ ++KP K R R + P+G P+ Sbjct: 453 PRRESAEDKPARKSRPRRRDDESDDPVPAGEWNGPKPG 490 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 176/438 (40%), Positives = 244/438 (55%), Gaps = 4/438 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +FS+L L LL+A+++ GFT PT IQ A+P AL GRDV+ SA TGTGKTAA++LP+L Sbjct: 8 VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 64 QHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 Q + R ++ PR+L+LTPTRELA QV + R L+K + TI GG+ Y E+ Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEM 127 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D++VAT GRL+ +++ D VE L+LDEADRMLDMGF + +E IA + Sbjct: 128 LRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAER 187 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLF+ATL+ A + A+ L DPV + ++ Q + RAD LEHK LL L Sbjct: 188 QTLLFTATLDRTA-ERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETL 246 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L E + IVF+ + LA+ L E G L G+M Q RN ++ L +GR+NV+ Sbjct: 247 LGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVI 306 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGIDI D++HV NFD+P+ + Y+HRIGRT RAG G + SL + + Sbjct: 307 VATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRA 366 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422 + Y + V+ L P P + G + + K +R Sbjct: 367 IEAYTNKAADMHVLPGLEPMPE-PERRPGGFNKGRPGGGKPGFKGRGFGGGNGGGGGYRG 425 Query: 423 TKNIGKRRKPSGT-GVPP 439 + G+RR + G P Sbjct: 426 NRPWGERRDGERSFGDRP 443 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 149/396 (37%), Positives = 218/396 (55%), Gaps = 6/396 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F+EL L S++ A+ + GF T IQ AIP A++G+D++G A TGTGKTAA+ +P Sbjct: 1 MVKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPM 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + R S + L++ PTRELA+QV++ + K + I GG + + + Sbjct: 61 VEAI----RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 E IVV T GRLL++++ E + +LDEAD+MLDMGF + E I + R+ Sbjct: 117 LEELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERR 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATL +Q A + L+DP + Q+Y + + K L L Sbjct: 177 QTLLFSATL-SPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPE-KQKFEALTRL 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L Q + +IVFV R RV ELA L E G + L G+++Q +R + + G V++L Sbjct: 235 LDQEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV+NFD+PR D+Y+HRIGRT RAG GTA + V D L Sbjct: 295 VATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEA 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 + + I+ I ++ T E K ++ Sbjct: 355 IEQAIDHQITSKPAPGGAESTEKNIEAVIEKIRGEI 390 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 161/451 (35%), Positives = 236/451 (52%), Gaps = 20/451 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L SLL+++ G+T PT IQA AIP AL+GRD+L SA TG+GKTAA++LP L Sbjct: 71 FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130 Query: 66 LLD---------------FPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIAT 109 L + R++ + LILTPTRELA QV D R+ L Sbjct: 131 LSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVP 190 Query: 110 ITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQ 169 + GG AY + I+VAT GRLL +I + + + L+LDEADRMLDMGFA Sbjct: 191 LVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFAD 250 Query: 170 DIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA 229 DI I T +QT++ SAT +G + AE +DP ++ T I + Y Sbjct: 251 DINAILEATPAHRQTIMSSATWDGP-VGKIAESFTKDPERINIKVETA---HIDEKVYFC 306 Query: 230 DDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNE 289 D+ +HK LL L+ PE ++I+F + E+A L++ CYL G++ Q KRN Sbjct: 307 DNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNR 366 Query: 290 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 349 + L G+ +++VATDVAARG+D+P+++HVFN+D+PR + Y+HRIGR+ RAGR G AI Sbjct: 367 IVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAI 426 Query: 350 SLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAK 409 +L D G + RY++ I ++ L P+ E + + + ++ Sbjct: 427 NLCSRDDRRQFGNIARYLKRDINEAQVEGLEPRFVEKFEGRGKPNGRDGRGRGRSGSDSR 486 Query: 410 EKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQ 440 R + R + + P+ Sbjct: 487 GGRDDRGSRSQRFAGSSDRPSSERRFADKPR 517 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 9/421 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 ++ F ++ +L AL+ G+T PT +Q + IP AL+ +D++ + TG+GKTA++ +P Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + P+ LILTPTRELA+QV + + + + + G ++ Sbjct: 61 CE----LANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAE 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + IVV T GR+L +I++ + L++DEAD ML+MGF + +E I + Sbjct: 117 LKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 T+LFSATL D I+ + + +++P + + + I + + E+K +LL + Sbjct: 177 TTMLFSATLPQD-IEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVRE-ENKFSLLKDV 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L I+F R +E V++L + L + G + G M+Q R + + G L Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGIDI ++S V N+D+P ++Y+HR GRT RAG KG AIS V A + L Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSE---KQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + YI I+ R E K +P K K + KK+ Sbjct: 355 IEEYIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKK 414 Query: 420 H 420 Sbjct: 415 K 415 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 150/435 (34%), Positives = 226/435 (51%), Gaps = 13/435 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L L E + A+ + G+ PT IQA AIP L GRDVLG A TGTGKTA++ LP + Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMD- 283 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 +L R ++ PR LIL PTRELA+QV+++ + ++ L+ A + GG + + +V S+ Sbjct: 284 ILSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSK 343 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 D+++AT GRL+ L++DEADRMLDMGF D+E I +QTL Sbjct: 344 GVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTL 403 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ I+ A+ L++P E++ I +++ K L HLL+Q Sbjct: 404 FFSATM-APEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMD-KRKALRHLLRQ 461 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + +++F ++ V L L + G L G++ Q R +++ G + +LV + Sbjct: 462 EKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCS 521 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARGIDI +SHVFNFD+P + Y+HRIGRT RAGR+G A +L D + + + Sbjct: 522 DVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEK 581 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKN 425 I PI I+ L + S++ R + K + K + R N Sbjct: 582 LINAPIPRIEIEGLE----------RAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDN 631 Query: 426 IGKRRKPSGTGVPPQ 440 K R + Q Sbjct: 632 ARKDRAFTEADAKSQ 646 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 138/444 (31%), Positives = 220/444 (49%), Gaps = 23/444 (5%) Query: 2 TVTTFSEL-ELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 + +F EL + E LL+ ++ + RPT +Q +IP L+GRD++ A TG+GKTAA+L Sbjct: 198 PMQSFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLF 257 Query: 61 PALQHLLDFPRK-----------KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIAT 109 P + +L+ + P L+L+PTRELA+Q + +R+ T + Sbjct: 258 PIVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNV 317 Query: 110 ITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQ 169 + GG + DI+VAT GRL I + + ++ LILDEADRMLDMGFA Sbjct: 318 LYGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAP 377 Query: 170 DIEHIA--GETRWR---KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ 224 I I E +QT++FSAT + IQ A+ L + + ++ I Q Sbjct: 378 QIREIVEDSEMPHSLDGRQTVMFSATFPRE-IQQLAKDFLHNYIFLTVGRVGATSGSIVQ 436 Query: 225 WYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 284 A++ +HK LLV LL + ++VFV + R ++ ++L + + G+ Q Sbjct: 437 RVVYAEE-DHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQ 495 Query: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344 +R A++ G+ +LVATDVAARG+DIP+++HV N DMP + D Y+HRIGRT RAG Sbjct: 496 QEREHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGN 555 Query: 345 KGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTR---APSEKQTGKPSKKVLAK 401 G A S V + +L + +EE + + + A + + +K ++ Sbjct: 556 TGLATSFVNESNKPILRDLLAALEES-GQDAPEWFQDMVKSCTASFGRYGNRFNKGGVSS 614 Query: 402 RAEKKKAKEKEKPRVKKRHRDTKN 425 + + ++ N Sbjct: 615 SQRGNRGLHSFGSVDIRSNQGGSN 638 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 144/391 (36%), Positives = 216/391 (55%), Gaps = 8/391 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF L L ++L+A+++ G+ P+ IQA IP L+ +DVLG A TGTGKTAA+ LP L Sbjct: 5 VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 ++ P+IL+LTPTRELA+QV++ + AKH +++ + GG +Y Sbjct: 65 NNI----DPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 ++VAT GRL+ +I A++ L+LDEAD ML MGF D+E I +T K Sbjct: 121 LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ IQ+ + + + +P +V + + Q ++ + HK +V Sbjct: 181 QTCLFSATMPKQ-IQNISSKYMNNPEQVHISARNSTVSSVEQVFW--NASIHKNKAIVRF 237 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + +IVFVR R +LA L G + L G+M Q R ++RL G +NV+ Sbjct: 238 LEAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVV 297 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 +ATDVAARG+D+ +S V N+D+P+ + Y+HRIGRT RAGR G AI V+ ++ LL Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKN 357 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + R+ I + + E K Sbjct: 358 IIRHTNSDIAQVELPTAKIVEEKRIEALQAK 388 >UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ17_PHYIN Length = 2091 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 206/430 (47%), Gaps = 7/430 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +++ +L+ ++ G+ P AIQ A+P + GRDV+G A TG+GKT A+LLP Sbjct: 1488 PLQKWTQCGFSVRMLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLP 1547 Query: 62 ALQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 +H+L P +++ P +I+ P RELA Q+ AR+ +K L + GG + Sbjct: 1548 MFRHVLAQPPLQENEGPIGIIMAPARELAQQIYVEARKFSKGLGLRATAVYGGSSVSEQI 1607 Query: 121 EVFSENQDIVVATTGRLLQYI---KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 DIV+ T GR++ + + + V ++LDEADRM DMGF I I Sbjct: 1608 ANLKRGSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMN 1667 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QTLLFSAT +++ A ++L+ PVE++ + I Q+ ++ + Sbjct: 1668 IRPDRQTLLFSATFPR-SVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKFMR 1726 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL L E +VFV K++ ++ L +AG L G Q R+ I Sbjct: 1727 LLQLLGLWYEKGNILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRK 1786 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 V+VAT VA RG+D+ D+ V N+ P + Y+HR+GRT RAGRKGTA + + + Sbjct: 1787 VRTVMVATSVAGRGLDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPDEE 1846 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEK-QTGKPSKKVLAKRAEKKKAKEKEKPRV 416 + + +E K + EL + K + G+ + + E E+ Sbjct: 1847 EYSVDLVKALENA-KQTIPPELTALAEGFTAKVKRGEARYHGSGFKGKGFTFDETERNET 1905 Query: 417 KKRHRDTKNI 426 ++ + Sbjct: 1906 QRTADLQRRQ 1915 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 136/435 (31%), Positives = 210/435 (48%), Gaps = 5/435 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F++L+L L++A+ G+ PT IQ IPPAL G+DV+G A TGTGKTAA+L+P L Sbjct: 86 MLFADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFL 145 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 P +++TPTRELA+Q+++ A +LA + GG + Sbjct: 146 NRW---RPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDGL 202 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + D+VV T GR+L +++ + V +LDEADRMLD+GF DIE I +Q Sbjct: 203 TRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQ 262 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLL SAT+ D+I+ R + DPV + P KI Q Y+ D + K LL ++ Sbjct: 263 TLLMSATVP-DSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQ-DRKFELLKRVV 320 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ + + ++FV ++ L L+ A + G++ Q +R + + + L+ Sbjct: 321 EREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLI 380 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDV +RGID+ +SHV N+D+P + Y+HRIGRT R G+ G AIS V L + Sbjct: 381 ATDVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNI 440 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 I I+ ++ S + A+++K + Sbjct: 441 EMMINRLIEEDRVEGFEAAAPRASRPAAEVKVVFSGWEAAKEEKPATDDDGWGSDDAPPQ 500 Query: 424 KNIGKRRKPSGTGVP 438 G K G Sbjct: 501 SGGGNDPKKPPFGRR 515 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 205/386 (53%), Gaps = 5/386 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF EL L +++ + + D + +PT IQ+ +IP AL G D++G A TG+GKTAA+L+PA+ Sbjct: 126 TFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAMV 185 Query: 65 HL-LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H+ L P + P +L+L+PTRELA Q+++ A+ + + + GG A Sbjct: 186 HIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQANDL 245 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +VVAT GRL+ +I+ V L+LDEAD+MLDMGF I I G +Q Sbjct: 246 RHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQ 305 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVHL 242 T++FSAT + IQ A L DPV + I Q + ++ E K + + + Sbjct: 306 TMMFSATWPKE-IQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFE-KLSKCLEV 363 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + + + I+F + + +L L G L G+ Q +R+ + + + +L Sbjct: 364 LNEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGIL 423 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ D+ V N+D P +TY+HRIGRTAR ++G A++ + + K Sbjct: 424 VATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRK 483 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSE 388 + + + + K + D L+ + Sbjct: 484 LAKIMTQA-KQELPDWLKALADVTPK 508 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 552 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 150/474 (31%), Positives = 234/474 (49%), Gaps = 37/474 (7%) Query: 1 MTVT-TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYL 59 MT TF++L L E +L+A+ D GF P+ IQ + IP L+G DVLG A TG+GKTAA+ Sbjct: 1 MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFA 60 Query: 60 LPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMN 118 LP L + P++L++ PTRELA+QV+D K+ I T+ GG Y Sbjct: 61 LPLLAQI----DPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDI 116 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 + +VV T GR+L +I+ + + ++LDEAD ML MGF D+E + E Sbjct: 117 QLRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAEL 176 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 QT LFSAT+ + I+ +R + DP EV + I Q + + K Sbjct: 177 PENHQTALFSATMP-EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGV-RKNEA 234 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L+ L+ + +I+F R + ++ L + G + L G+M Q R + + RL G Sbjct: 235 LLRFLEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGS 294 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 ++++VATDVAARGIDI +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + Sbjct: 295 LDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERR 354 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA---------- 408 LL + +++ I + +K K +K++ E+ ++ Sbjct: 355 LLRNIEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQ 414 Query: 409 -------------KEKEK------PRVKKRHRDTKNIGKRRKPSGTGVPPQTTE 443 + K+K P ++KR R+ + G RR+ + + Sbjct: 415 DQENIAAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERK 468 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 552 bits (1424), Expect = e-156, Method: Composition-based stats. Identities = 128/402 (31%), Positives = 204/402 (50%), Gaps = 7/402 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F +L L ++EA++ G++ T IQ IP + G+D+ G A TGTGKTAA+ +PA+ Sbjct: 1 MLFKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAI 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEV 122 +H+ + LIL PTRELA+QV ++L+K L + + GG + Sbjct: 61 EHV----DISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRD 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 IVV T GR++ ++ + + +ILDEAD ML+MGF +DIE I + Sbjct: 117 LKAGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEER 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT+LFSATL I A+R +P + + Q+YY + KT ++ + Sbjct: 177 QTVLFSATL-APPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNS-QKTEIVTQI 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + ++F + +V E+ + L+ G N L G+ Q R E + + +G N+L Sbjct: 235 IDLNNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARGID+ V V N+D+P + Y+HRIGRT RAG+ G + +LV + + L Sbjct: 295 VATDVAARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRD 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + RY + I+ + +K + + ++ + Sbjct: 355 IERYTKATIEKAETPTRQELVAYKKDKLATRITTELEKPNIK 396 >UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 n=2 Tax=Hydra magnipapillata RepID=UPI00019259AA Length = 790 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 141/444 (31%), Positives = 215/444 (48%), Gaps = 7/444 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F D+ L+ ++ +++PT IQ+ A+P AL GRD++G A TG+GKTAA++ P L Sbjct: 277 SFGHFGFDDHLMGVIRSSNYSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPMLV 336 Query: 65 HLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 H++ P K G P LI PTREL Q++ + K +L + GG + + Sbjct: 337 HIMAQPVLKEGDGPIALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWEQTKGL 396 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + +IVV T GRL+ IK + + V L+ DEADRM DMGF + IA R +Q Sbjct: 397 QQGAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQ 456 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA-LLVHL 242 LLFSAT+ ++ +L DP+ + + I Q + K LL H+ Sbjct: 457 CLLFSATM-KKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSHI 515 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 ++ ++FV K+ E+A L+E G + G+ Q +RN +K+ + + +L Sbjct: 516 VEFTSGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLIL 575 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DIP + V N+D+ R T+ HRIGRT RAG KG A +L+ D Sbjct: 576 VATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQDTHFAAD 635 Query: 363 VGRYIEEPIKARVIDELRPKTRAPS-EKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + R +E + + L + P K K +K K + P K Sbjct: 636 LVRNLEGANQRVPDELLDLALKNPWFRKTRAKRGRKAANKEFTPRDRPGLGLPEGKGGGN 695 Query: 422 DTKNIGKRRK---PSGTGVPPQTT 442 D N+ + + G P + Sbjct: 696 DEGNLADEEELTVGNSGGKRPSRS 719 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 206/387 (53%), Gaps = 7/387 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +V +F +L L+E LL+A+++ GFT P+ IQ+ AIP L+GRDV+G A TGTGKTAA+ LP Sbjct: 3 SVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLP 62 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 LQ + R + L+L PTRELA+QV++ LAKH + I ++ GG A Sbjct: 63 LLQRIDAADRS----VQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQA 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +VV T GR+L +I V +LDEAD MLDMGF +DIE I E Sbjct: 119 SALRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPE 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q+ FSAT+ D I + A R L +P + Q ++ + + Sbjct: 179 WVQSAFFSATMP-DGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPF-RRVDAVC 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + ++IVF ++ V ELA L++ GI L G++ Q +R + R G ++ Sbjct: 237 RIFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGIS 296 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ DV V NFD+P +TY+HRIGRT RAGR G A S D L Sbjct: 297 VLVATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKL 356 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPS 387 + R I R + +RA + Sbjct: 357 RDIQRVTGSRIDRRAMPTAADASRART 383 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 128/404 (31%), Positives = 202/404 (50%), Gaps = 19/404 (4%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + F E L L++ ++ GF +PT +Q +IP L GRD+L A TG+GKT A+L P Sbjct: 150 PIAAFKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFP 209 Query: 62 ALQHLLDFPRKKS------------GPPRILILTPTRELAMQVSDHARELAKHTHLDIAT 109 + +L+ P ++ P +LI+ PTREL+ Q+ D +R+ HT Sbjct: 210 IISNLMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVV 269 Query: 110 ITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQ 169 GG A + DI+VAT GRL+ I + V+ L+LDEADRMLDMGF Sbjct: 270 AYGGAAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEP 329 Query: 170 DIEHIAGET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 I +I +T ++ TL+FSAT + IQ A L + + ++ + I Q Sbjct: 330 QIRYIVEKTGMPAPGQRITLMFSATFPKN-IQTLARDFLHNNLNLTVGRVGSTHENILQK 388 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 + D E + +L + ++VFV+ ++ L +L + G + + G+ Q Sbjct: 389 FVYCKDDEKRDLMLEAIASVET--LTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQR 446 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 +R A++ G +LVATDVA+RG+DI DV HV N+D+P + + Y+HRIGRT RAG Sbjct: 447 ERETALENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNT 506 Query: 346 GTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEK 389 G + S ++ + + +EE + + + + K Sbjct: 507 GISTSFFTDKNNQIADDLITVLEEAKQEVPPFIVEGRDKLRYAK 550 >UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WWC4_CAEBR Length = 692 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 127/412 (30%), Positives = 202/412 (49%), Gaps = 33/412 (8%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + FS+ +++E + G+T+PT +Q +IP L RD++ A TG+GKTAA+LLP Sbjct: 162 IENFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPI 221 Query: 63 LQHLLDFPR--------------------------KKSGPPRILILTPTRELAMQVSDHA 96 +QH++ +++ P L+L+PTRELA+Q+ A Sbjct: 222 IQHIMAGGPDMIKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKEA 281 Query: 97 RELAKHTHLDIATITGG-VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLI 155 + + T+L A + GG Y + I++AT GRL+ I++ L+ Sbjct: 282 AKFSYKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLV 341 Query: 156 LDEADRMLDMGFAQDIEHIAGE-TRWR--KQTLLFSATLEGDAIQDFAERLLE-DPVEVS 211 LDEADRMLDMGF I I G+ + + T +FSAT + IQ A+ L+ + V ++ Sbjct: 342 LDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKE-IQLLAKDFLKENYVFLA 400 Query: 212 ANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA 271 + I Q +++E + L+ L+ + +VFV + +ELA +L Sbjct: 401 VGRVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQ 460 Query: 272 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDT 331 I + + G++ Q +R ++ G+ +LVAT VAARG+DIP+V HV N+D+P D Sbjct: 461 QIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDE 520 Query: 332 YLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKT 383 Y+HRIGRT R G G A S + + + I V + L Sbjct: 521 YVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLI-MEANQEVPEWLHQVA 571 >UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI Length = 839 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 145/401 (36%), Positives = 217/401 (54%), Gaps = 3/401 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 VT+F D+ L++A++ +T+PT+IQA A+P AL GRD++G A TG+GKTAA++ P Sbjct: 299 PVTSFGHFGFDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWP 358 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L HL+D K+G P LIL PTREL++Q+ + A+ K +L + GG + + Sbjct: 359 LLMHLMDQRELKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQS 418 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + +I+VAT GR++ +K + + R V L+LDEADRM MGF + I R Sbjct: 419 KALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRP 478 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA-LL 239 +QTLLFSAT I+ A +L DP+ + + + Q Y + + K LL Sbjct: 479 DRQTLLFSATF-KRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLL 537 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 HL+K ++FV K+ +A+ L N L G+M Q RN+ I + Sbjct: 538 CHLVKFLAEGSCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKEC 597 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++L+ATDVAARG+DIP + +V N+D+ R DT+ HRIGRT RAG KG A +LV D Sbjct: 598 DILIATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEF 657 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 G + R +E + D L ++ + + K Sbjct: 658 AGHLVRNLEGADQPVPSDLLELAMKSSWFRSSRFKQGKGKK 698 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 135/451 (29%), Positives = 207/451 (45%), Gaps = 23/451 (5%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +L ++D GF PT IQA P AL RD++ A TG+GKT YL+PA Sbjct: 489 TFEASGFPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAFI 548 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L P +L+L PTRELA Q+ D + + + + + GG + + Sbjct: 549 LLRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKELT 608 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 DIVVAT GRL ++ + D V L+LDEADRMLDMGF I I E R+QT Sbjct: 609 RGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 668 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANP--STRERKKIHQWYYRADDLEHKTALLVHL 242 L+++AT + ++ A LL +PV+V+ K I Q+ +E K + L + Sbjct: 669 LMYTATWPKE-VRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQME-KESRLGQI 726 Query: 243 LKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L+ E + I+F + +LA + + G+ QG+R+ + + G+ + Sbjct: 727 LRAQERGSKVIIFCSTKRLCDQLARSIGHQ-FGAAAIHGDKSQGERDWVLNQFRSGKSPI 785 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT-------AISL--- 351 LVATDVAARG+DI D+ V N+D P + Y+HRIGRT RAG G A ++ Sbjct: 786 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVNVAAHMIATTIWMV 845 Query: 352 --VEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAK 409 V+ + L+ + + + I+ L + S ++ ++ R ++K Sbjct: 846 VDVDVEEEGLMVE-EKLL----TEVGIEVLAVVLKDRSRSRSYDRFERPRVSRFDEKDVT 900 Query: 410 EKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQ 440 + SG P+ Sbjct: 901 APGSEAPESGMSPMSPGAHGNVHSGAEEVPK 931 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 144/405 (35%), Positives = 215/405 (53%), Gaps = 7/405 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F + ++S+L +L +KG+ PT IQ AAIP + GRD+LG A TGTGKTAA+ LP ++ Sbjct: 53 FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMNHAEVFS 124 L D + +L++TPTRELA QV++ + + T+ I GG Y N Sbjct: 113 LADNKELNAK---VLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALK 169 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+VV T GR++ +I++ F ++ L+LDEAD ML+MGF +DIE I + KQ Sbjct: 170 RKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQM 229 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ + I++ A++ L DP E+ +E + I Q + HK L +L+ Sbjct: 230 VLFSATMPNE-IRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRH-HKLDALKRILE 287 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+FVR + +A L G + L G++ Q +R + RL +G +++LVA Sbjct: 288 LNNEG-VIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V N+D P +TY HRIGRT RAGR G AI V + L + Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLE 406 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAK 409 I+ I + EK ++ LAK ++ Sbjct: 407 NSTRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKA 451 >UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) n=2 Tax=Eumetazoa RepID=B8A609_DANRE Length = 719 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 139/396 (35%), Positives = 210/396 (53%), Gaps = 7/396 (1%) Query: 2 TVTTFSE-LELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 V TF E ++E + GF +PT IQ+ A P L+G D++G A TGTGKT AYLL Sbjct: 275 PVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLL 334 Query: 61 PALQHLLDFP--RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P H+ P R K P +L+LTPTRELA+Q+ + + + I GG Sbjct: 335 PGFIHMDGQPMPRDKRNGPGMLVLTPTRELALQIEAECNKYS-YKGFKSICIYGGGDRNA 393 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 +V + DIV+AT GRL E + R++ L+LDEADRMLDMGF I I + Sbjct: 394 QIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDI 453 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTA 237 R +QT++ SAT ++ A+ L+DP+ V + Q + E K Sbjct: 454 RPDRQTVMTSATWP-PGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDY 512 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 + + + + ++FV K+ + +L++ L GI L G+ Q R EA++ +G Sbjct: 513 VFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDG 572 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 RV +LVATD+A+RG+D+ D++HVFN+D PR+ + Y+HR+GRT RAGR G +++LV D Sbjct: 573 RVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDW 632 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + ++ +E V +EL + + K Sbjct: 633 RVAAELITILERS-GQDVPEELVLMAERYEKHRREK 667 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 139/402 (34%), Positives = 215/402 (53%), Gaps = 6/402 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+ +F L L E+ + L++ GF PT IQ AIP L+G DVLG + TGTGKTAAY L Sbjct: 1 MTI-SFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L+ + ++LILTPTRELA QV++ ++ L I T+ GG + Sbjct: 60 PILEKVDIQDPS----VQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVV T GR++ I+ + ++ +LDEAD ML MGF D++ I +T Sbjct: 116 RSLERGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPE 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + T FSAT+ + I++ + L+ PV +S + +I Q Y K L Sbjct: 176 SRSTACFSATMPRE-IRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQ 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ + +I+FVR ++ +L L+E G G + Q +R + R +GR+ Sbjct: 235 PVLEIEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIK 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 ++VATD+AARG+D+ +SHV N+D+P + +TY+HRIGRT RAG+ G AIS+VE+ D ++ Sbjct: 295 LVVATDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMI 354 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 ++ R + + I I K + ++ +R Sbjct: 355 RQIERKLRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGER 396 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 146/441 (33%), Positives = 229/441 (51%), Gaps = 14/441 (3%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF+EL + +L+A+ D GF PT +Q+ AIP L+ D++ + TG+GKTA + + L Sbjct: 3 NTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSIL 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q + P+ LILTP RELA+QV + R++AK+ I G ++ Sbjct: 63 Q----LTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQIL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 ++ IV T GR+ +I + + L+LDEADRMLDMGF + I + Sbjct: 119 NKGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERI 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT+ + I + +R + +PV + T+ IHQ YYR + E K L LL Sbjct: 179 TLLFSATMPPE-IHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNE-KNTQLNRLL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + ++F + V + ++L + G ++ L G++ Q KR I++ +G+ ++LV Sbjct: 237 IVEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGI I D+S V N+D+P D Y+HRIGRT RAG +G A SLV D + L ++ Sbjct: 297 ATDVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 +I I + + T+A E ++ + A ++K + K+ R Sbjct: 357 EEHIGTLILEEELPDEEAFTKAREE-----AAQWIKANSLKEKAPRSASADSSVKQKRTG 411 Query: 424 KNIGKRRKPSGTGVPPQTTEE 444 +N R P+G P+ ++ Sbjct: 412 QNSKSNRIPNG---RPEYSKR 429 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 159/467 (34%), Positives = 219/467 (46%), Gaps = 42/467 (8%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+ L L + L E LQ G+ T IQA IP L+GRDV+G A TGTGKTAA+ LP L + Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFS 124 + K P+ L+L PTRELA QV++ R + L I +I GG + Sbjct: 71 I----DVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLR 126 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 E IVVAT GRLL +I+ + D + ++LDEAD ML MGF D++ I +T ++ Sbjct: 127 EGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKV 186 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ ++D A + L +P E+S + + I Q Y+ A K L LL Sbjct: 187 ALFSATMPK-RVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGAS-KLEALKRLLA 244 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + IVF R RE +A LR+ G+ L G+M Q R + L G ++VLVA Sbjct: 245 FEDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVA 304 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ ++HV N+D+P + Y+HRIGRT RAGRKG AI V + +L + Sbjct: 305 TDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIE 364 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKK--------------------------- 397 R + I + + E Sbjct: 365 RLTRQSIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIAV 424 Query: 398 --------VLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTG 436 A + K EK P + RD K+ RK G Sbjct: 425 ALAGMLHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQG 471 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 144/401 (35%), Positives = 217/401 (54%), Gaps = 6/401 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T FS L L ES+++AL + GF +PT IQ +IP LDGRD+L A TGTGKTAA+ LP + Sbjct: 3 TAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLV 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + L+L PTRELA+QV + +KH+ + + I GG Sbjct: 63 DR----SDPQDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 IVV T GR+L ++ + D A+ TL+LDEAD+MLDMGF ++++ I +Q Sbjct: 119 RAGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 + FSATL +I+ A R L P+ ++ R+ I Q Y + +++ L +L Sbjct: 179 LVFFSATLPA-SIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVN-FKNRAQALTRVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +++F R ++ ELA L++ G L G++ Q R + R ++NV+V Sbjct: 237 AAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI D+SHV N+DMP+ G++Y+HRIGRT RAGR G AIS D L + Sbjct: 297 ATDVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLI 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 R + I +E+ + +++ A ++ Sbjct: 357 ERATGSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESD 397 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 155/401 (38%), Positives = 221/401 (55%), Gaps = 4/401 (0%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +T FSEL L + L+A+ D G+T T IQAAAIP AL G+DVLG A TGTGKTAA+ LP Sbjct: 1 MTEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 + L+ R K+ PR L++ PTRELA QV+ + AK T L A + GGV++ + + Sbjct: 61 IDKLM-NGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKK 119 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRLL + + V+ L++DEADRMLDMGF DIE I T +K Sbjct: 120 LDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKK 179 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA--LLV 240 QTL FSAT+ + I ++ L+DPV + A+ + I Q + + K L Sbjct: 180 QTLFFSATMPPE-ITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALR 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L+++ + IVF ++ V +A L+ G + + G++ Q +R + + +G + Sbjct: 239 ALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLK 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVA+DVAARG+DIP VSHVFN+D+P D Y+HRIGRT RAGR G LV D Sbjct: 299 ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGF 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 KV + I +D + + + A Sbjct: 359 DKVVKLIGSTPTEEKLDLDYSGAVTIKREGDKRGGGRDRAP 399 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 140/398 (35%), Positives = 207/398 (52%), Gaps = 5/398 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F EL + + +E L+ GFT PT IQA AIP L GRDV+G + TGTGKTAA+ LP L+ Sbjct: 4 SFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILE 63 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + ++LTPTRELA+QV D + ++ L I GG + Sbjct: 64 RLDPQ----QKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLK 119 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 IVV T GR++ ++ N V+ +LDEAD ML MGF D+E I + +QT Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LFSAT+ +I+ + L PV V+ KI+Q Y K L +L+ Sbjct: 180 ALFSATMP-PSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILE 238 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + +++FVR R EL + L+ AG + G++ Q R + R +V +VA Sbjct: 239 MEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVA 298 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TD+AARG+D+ +SHV N+D+P S +TY+HRIGRT RAG++GTAI+LV+ + Sbjct: 299 TDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFE 358 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 R++ + + I K + + + +R Sbjct: 359 RHVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGER 396 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 143/395 (36%), Positives = 202/395 (51%), Gaps = 17/395 (4%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L L LL+ L+ G+ PT IQA +IP LDG DVLG+A TGTGKTAA+ LP Sbjct: 1 MNKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPRKKSGPP-------------RILILTPTRELAMQVSDHARELAKHTHLDIAT 109 LQ ++ ++ P R L+L+PTREL+ Q+ + R K T L Sbjct: 61 LQ-IMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTV 119 Query: 110 ITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQ 169 I GGV D +VAT GRLL + + D + VE L+LDEAD MLDMGF Sbjct: 120 IFGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLP 179 Query: 170 DIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRA 229 D++ I +Q LLFSAT+ G I+ A+ +L DPV + P ++I Q Sbjct: 180 DVKRILKFLPRDRQNLLFSATMPGP-IRKLADEILVDPVTIQIAPQKPTVERIEQSICFV 238 Query: 230 DDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNE 289 + K LL H ++ ++VF R + +A L +AG+ + G Q R Sbjct: 239 AQAD-KPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVR 297 Query: 290 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 349 + + ++VLVATDVAARGIDI + V N+D P + + Y+HRIGRT RAGR+G + Sbjct: 298 TLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETV 357 Query: 350 SLVEAHDHLLLGKVGRYIEEPIKARV-IDELRPKT 383 H+ + R I+ I + +P+ Sbjct: 358 MFCGGHETKFFIAIEREIKLQIPVATGLPGCQPRP 392 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 218/413 (52%), Gaps = 6/413 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 +TTF++L L +LEAL+D G+ P+ IQ AIPP L G D++G A TG+GKTAA+ LP Sbjct: 1 MTTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++++ + L+LTPTREL +QV+ R +D+ + GG + Sbjct: 61 MEYV----DPSDRDVQALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQ 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 IVV T GR+ I + ++LDEAD MLD+GF +D+E I T + Sbjct: 117 LRAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSR 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QT LFSAT+ + I+ +ER L +PV V +T + Q+ + K +L + Sbjct: 177 QTALFSATMPPE-IRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRD-KPDMLGTV 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L+ + ++IVFVR + R +L LR+ G+N L G+M QG+R+ + GR+ +L Sbjct: 235 LESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPIL 294 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DI V+HV NFD+P S D Y+HRIGRT R GR G AI+ ++ + Sbjct: 295 VATDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEA 354 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + R+ P+ R + + + A + A + + R Sbjct: 355 IERHTRTPMAPWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTR 407 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 166/439 (37%), Positives = 236/439 (53%), Gaps = 9/439 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 MT+ TFS L+L SL + L++ GF RPT IQ AIPPAL+GRDVL A TG+GKT A+LL Sbjct: 1 MTM-TFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L L+ PR G R L+LTPTRELA Q+ + +++ HT L A + GGV Sbjct: 60 PILHQLMSKPR---GNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQE 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR- 179 F D++VAT GRLL + ++ +E L+LDEADRMLDMGF +I+ I Sbjct: 117 HAFRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPN 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 ++QTL FSAT+ I + +L PV ++ K I Q Y E K+ALL Sbjct: 177 RKRQTLFFSATMPPP-IAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQ-ELKSALL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 V LLK+ + +++VF R + R + LA+ L AGI + G Q +R +A+ +G Sbjct: 235 VALLKRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSY 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATD+AARGID+ + HV NFD+P + + Y+HR+GRTARA G A + V + Sbjct: 295 QVLVATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGE 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L + R I+ + + + + + + P + +A+ +KK R Sbjct: 355 LKLIERAIKRALPRVTVPDFDYHAKPTQKLEV--PIAERIAEIRKKKAEDRARAAAKVAR 412 Query: 420 HRDTKNIGKRRKPSGTGVP 438 + RK + P Sbjct: 413 RTAAQESEAARKSAKDAKP 431 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 130/391 (33%), Positives = 195/391 (49%), Gaps = 11/391 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + TF + + E L++ + G+T PT IQ P AL GRD++G A TG+GKT A++LP Sbjct: 172 PIRTFEQGQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLP 231 Query: 62 ALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P K P +L+L PTRELAMQV A K L I GGV N A Sbjct: 232 AIIHVNAQAPLKHGDGPVVLVLVPTRELAMQVQAEATRFGKMAGLMNTAIFGGVPRYNQA 291 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I +AT GRLL +++ + + V L+LDEADRMLDMGF I I + R Sbjct: 292 NDLRRGVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVSQIRP 351 Query: 181 RKQTLLFSATLEGDAIQDFAERLLE-DPVEVSAN-PSTRERKKIHQWYYRADDLEHKTAL 238 +QT ++SAT + +Q A +P+ ++ + + Q +++ + Sbjct: 352 DRQTTMWSATWPKE-VQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMF 410 Query: 239 LVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 L + R IVF ++ L +R N + G+ Q +R+ + G Sbjct: 411 FDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTG 470 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV----- 352 R NVLVATDVA RG+DI +V V N+DMP++ + Y+HRIGRT RAG G +++ + Sbjct: 471 RCNVLVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFITNDTH 530 Query: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKT 383 + + + +E +K L Sbjct: 531 TPDRVRMAKDIVKCME-DVKQTPPQSLYDMA 560 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 145/412 (35%), Positives = 217/412 (52%), Gaps = 9/412 (2%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L++ +L A+ D G+ PTAIQAA IP + G DV+G A TGTGKTAA+ +P L Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF 123 + + P+ L+L PTRELA+QV++ + L++ I GG +Y Sbjct: 74 KIDITSKV----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGL 129 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +VV T GR++ +++ D V+ L+LDEAD ML MGFA D+E I ET KQ Sbjct: 130 RRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQ 189 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LFSAT+ AI+ + + L DP EV+ T + I Q Y + K L +L Sbjct: 190 VALFSATMP-PAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA---RKMDALTRVL 245 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + IVFVR ++ E+A LR G + + G++ Q +R I L +G +++LV Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ +SHV N+D+P ++Y+HRIGRT RAGR G A+ V + LL + Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 + + + + + K + + E + +E R Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYER 417 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 549 bits (1415), Expect = e-155, Method: Composition-based stats. Identities = 159/391 (40%), Positives = 223/391 (57%), Gaps = 7/391 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F +L L LL+A+ D GF PT IQ AIP L+G +++G APTGTGKTAAYLLP Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LQ + ++ ++LI+TPTRELA+QV+D +L K+ + + GG A Sbjct: 61 LQRI-----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRG 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + +++V T GR+L +I + F ++ +ILDEAD MLDMGF DIE I R+ Sbjct: 116 LRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSATL I+ ++ L V + I Q YY + E K LV + Sbjct: 176 QTLLFSATLPAP-IKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSI 233 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L ++IVF R ++RV E+ L G L G+M Q +R + IK G+ +L Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DIPDVSHV NFD+P++ ++Y+HRIGRT RAGR+G AI+L+ + LL Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKA 353 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + I + +K ++ E A +K K Sbjct: 354 IEEAINKRLKREILPEPVDLEEARFKKIAKK 384 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 131/404 (32%), Positives = 211/404 (52%), Gaps = 6/404 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F++L L + +A++ GF T IQA +IP G DV+G + TGTGKT A+ + Sbjct: 1 MNSIPFAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGV 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 PA++ + + ++LIL PTRELA+Q ++AK+ + I GG Sbjct: 61 PAVELIDT--EELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQ 118 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +IVV T GR++ +++ ++ +ILDEAD ML+MGF +D+E I +T Sbjct: 119 IMRLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTP 178 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT+ AI ++ +DP + N I Q +Y + K L Sbjct: 179 DERQTILFSATMP-PAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEV-PMGRKMDAL 236 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 +L+ + SI+F + V E+ +L +G + L G+M Q +R + + GR Sbjct: 237 GIILQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRT 296 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHL 358 +LVATDVAARGID+ +V +V N+D+P++ + Y+HRIGRT RAG++G A+++ Sbjct: 297 KILVATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVD 356 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 L + R + IK + + R +E + +K+ A Sbjct: 357 ELYHIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAE 400 >UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9SM44_RICCO Length = 650 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 129/393 (32%), Positives = 197/393 (50%), Gaps = 20/393 (5%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V TF+E++L E+L ++ + +PT +Q AIP +L GRD++ A TG+GKTAA+ P Sbjct: 186 PVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFP 245 Query: 62 ALQHLLDFPRKKSGPPR---------ILILTPTRELAMQVSDHARELAKHTHLDIATITG 112 + ++ + + P LIL+PTREL+MQ+ + AR+ + T + + G Sbjct: 246 IISGIMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYG 305 Query: 113 GVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 172 G DI+VAT GRL+ ++ + V L LDEADRMLDMGF I Sbjct: 306 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIR 365 Query: 173 HIAGET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYR 228 I + +QT+LFSAT + IQ A L + + ++ I Q Sbjct: 366 KIVEQNDMPRPGARQTMLFSATFPKE-IQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEF 424 Query: 229 ADDLEHKTALLVHLLKQPEAT------RSIVFVRKRERVHELANWLREAGINNCYLEGEM 282 + + ++ L+ L Q ++VFV ++ L +WL G + G+ Sbjct: 425 VQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDR 484 Query: 283 VQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA 342 Q +R +A++ G +LVATDVAARG+DIP V+HV NFD+P D Y+HRIGRT RA Sbjct: 485 SQQEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 544 Query: 343 GRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375 G+ G A + + L + ++E + Sbjct: 545 GKSGLATAFFNEGNASLAMALADLMQESNQEVP 577 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 140/405 (34%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F E+LL+ L DKG++ P+ IQ AA P + GRD++G A TGTGKTAA+ LP L+ Sbjct: 73 FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMNHAEVFS 124 L P++L+L PTRELAMQV+D + A H HL + + GG + + Sbjct: 133 L----ESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLR 188 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 D+VV T GR++ ++++ D + +L+LDEAD ML MGF D+E I + +Q Sbjct: 189 RGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQV 248 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 +LFSAT+ + I+ ++R L DP EV+ ++ K I Q + HK L +L Sbjct: 249 VLFSATMPPE-IRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITV-PMSHKLEALQRVLD 306 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 I+F R + +A L AG L G++ Q +R ++RL G V+VLVA Sbjct: 307 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARG+D+ + V N+DMP + Y+HRIGRT RAGR G A+ + + + + Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAK 409 R +PI+ + + ++ + S+ ++ Sbjct: 427 RATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGA 471 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 138/446 (30%), Positives = 221/446 (49%), Gaps = 12/446 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F++L + E + L T PT +Q AIPP L RDV+ A TGTGKT A++LP L Sbjct: 3 NKFAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPIL 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 + + + + LI+TPTRELA+Q++ ++LA+ ++I GG Sbjct: 63 ERV----NVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 + I++ T GRLL +++ + + + L+LDEAD+ML MGF +D+E I R+Q Sbjct: 119 KGSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 + FSAT+ ++ AE+ ++DPV++ +I Q D K LL L Sbjct: 179 NMFFSATMPNQ-VRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTD-RGKQDLLCQLF 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +I+F R + R L L G N+ L G++ Q KR + +K + ++ LV Sbjct: 237 DEYNPFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLV 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI V+H+FN+D+P+ G++Y+HRIGRT RAG G AI+ + + D L + Sbjct: 297 ATDVAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKII 356 Query: 364 GRYIEEPIKARVIDE------LRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 + I+ + + + S K G K K K + + + Sbjct: 357 EKVIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKDFKKGKYGDKKGKPGDKKGR 416 Query: 418 KRHRDTKNIGKRRKPSGTGVPPQTTE 443 + + K+ +P P + Sbjct: 417 PGDKRDRPTDKKGRPGDKRDRPSDNK 442 >UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=34 Tax=Dikarya RepID=PRP5_ASPTN Length = 1181 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 128/432 (29%), Positives = 202/432 (46%), Gaps = 12/432 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V +S+ L L+ + G+ PT+IQ+ AIP + GRDV+G A TG+GKT A+L+P Sbjct: 547 PVQKWSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIP 606 Query: 62 ALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 +H+ D P + P LI+TPTRELA Q+ + K +L GG + Sbjct: 607 MFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI 666 Query: 121 EVFSENQDIVVATTGRLLQYIKE---ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +IVV T GR++ + + R V ++LDEADRM DMGF + I Sbjct: 667 AELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMAN 726 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QT+LFSAT + ++ A + L PVE+ + +I Q + + K Sbjct: 727 VRPDRQTVLFSATFPRN-MEALARKTLNKPVEIVVGGKSVVAPEITQIV-EVRNEDKKFV 784 Query: 238 LLVHLL------KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 291 L+ LL + E R+++FV ++E L L G + G Q R+ I Sbjct: 785 RLLELLGNLYSSDENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTI 844 Query: 292 KRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 351 + G VL+AT VAARG+D+ + V N+D P + Y+HR GRT RAG GTA++ Sbjct: 845 EDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF 904 Query: 352 VEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEK 411 + + + +++ + + + + GK + + ++ Sbjct: 905 LTEDQERFSVDIAKALKQSGQKVPEPVQQMVDSFLEKVKAGKEKASASGFGGKGLERLDQ 964 Query: 412 EKPRVKKRHRDT 423 E+ + R R T Sbjct: 965 ERDAARMRERRT 976 >UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME Length = 1224 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 133/447 (29%), Positives = 211/447 (47%), Gaps = 12/447 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + T+++ + + +E L+ GF +PT IQ AIP + GRD++G A TG+GKT A++LP Sbjct: 508 PIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILP 567 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 +H+LD P + G +I+ PTREL MQ+ R+ +K L + GG Sbjct: 568 MFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627 Query: 121 EVFSENQDIVVATTGRLLQYI---KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +I+V T GR++ + + R V ++LDEADRM DMGF + I Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QT++FSAT ++ A R+L+ P+EV + K++ Q +D Sbjct: 688 VRPDRQTVMFSATFPRQ-MEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK 746 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL L EA IVFV K+E L L +A L G + Q R+ I G Sbjct: 747 LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSG 806 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 +V +L+AT VAARG+D+ D+ V N+D+P + Y+HR GRT RAG+KG+A + + Sbjct: 807 KVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQS 866 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 G + R + + + K ++ K + + Sbjct: 867 RYAGDIIRAM-------DLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFD 919 Query: 418 KRHRDTKNIGKRRKPSGTGVPPQTTEE 444 ++ + K+ + + G+ EE Sbjct: 920 EQEFNAAKESKKLQKAALGLADSDDEE 946 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 236/484 (48%), Gaps = 49/484 (10%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F +L L LL+A+++KG+ PTAIQA AIP L GRD+L A TGTGKT A+ LP + Sbjct: 1 MSFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q +L R PR LILTPTRELA+QV + + A+ L GGV Sbjct: 61 Q-ILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARL 119 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 DI+VAT GRLL +E+ ++E L+ DEADRMLD+GF+ +I I ++ Sbjct: 120 ERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRR 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT I+ A ++L+ P + P T + + Q + + ++K LL+HL+ Sbjct: 180 TMLFSATY-TPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNK-DNKLPLLLHLI 237 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ + R +VF R R + L + L GI+ L G Q R ++ +G++++LV Sbjct: 238 EKQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILV 297 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+DI ++ V N+D+P S + Y+HRIGRT RAG G A+SLV + LL + Sbjct: 298 ATDVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAI 357 Query: 364 GRYIEEPIKARVIDEL-------------------------------------------- 379 + I + Sbjct: 358 EDLLRHQIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLTVQGR 417 Query: 380 --RPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGV 437 +PK P G ++K A++AE K + KPR + + GK P G Sbjct: 418 GKKPKDAGPESTTRGNKNEKSDARKAEDKDTRPDSKPRGRSTGKPDARSGKDSGPDAKGR 477 Query: 438 PPQT 441 + Sbjct: 478 GRRN 481 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 156/444 (35%), Positives = 228/444 (51%), Gaps = 20/444 (4%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 + + L LL+A++ G+ T IQ AIP G D+L SA TGTGKTAA+ LP L Sbjct: 1 MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60 Query: 64 QHLL------------------DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL 105 + + R LILTPTRELA QV+D+ ++ +++ + Sbjct: 61 DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPI 120 Query: 106 DIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDM 165 + GG + ++ + D++VAT GRLL+++ N D V+ L+LDEADRMLDM Sbjct: 121 KSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDM 180 Query: 166 GFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 GF DIE + + + QTL+FSAT D ++ A +LL+ P +S + KI Q Sbjct: 181 GFLTDIEKLLLAVKHKHQTLMFSATF-SDRVKSLANQLLKSPKTISVSKENTTSGKIKQA 239 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 Y + E K LL L+ + +VF +E + LA L+ GI G+ QG Sbjct: 240 VYWVTE-ERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQG 298 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 RN+A+++ +EG+V VLVATDVAARG+DIPD++ V NF +P + Y+HR+GRT RAG+ Sbjct: 299 ARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKS 358 Query: 346 GTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK 405 GTAISLV D L + + IE + V SE Q + + Sbjct: 359 GTAISLVSPKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKRDSKNRYRAA 418 Query: 406 KKAKEKEKPRVKKRHRDTKNIGKR 429 ++ + + K +KN R Sbjct: 419 QEKNQNLAKKDVKIKSLSKNKTAR 442 >UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4EAF2_9ACTN Length = 749 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 165/472 (34%), Positives = 231/472 (48%), Gaps = 38/472 (8%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL L + +L A+++ G+T PT +QA +IP L+GRD+L +A TGTGKTAA+LLP + + Sbjct: 48 FDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNN 107 Query: 66 L--------------------LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL 105 L P P +L++TPTRELA Q+ + A ++A T Sbjct: 108 LEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGH 167 Query: 106 DIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDM 165 T+ GGV+Y DI+VAT GRL+ I++ V+ L+LDEADRMLDM Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDM 227 Query: 166 GFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW 225 GF + I ET +QTLLFSATL+ +A+ + L+ DP V P+T + Q+ Sbjct: 228 GFLPAVRRIVRETPAERQTLLFSATLDEEAVGEIT-DLVSDPARVEIAPATSTADTVDQF 286 Query: 226 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 285 + +E K LL LK+ R+IVF+R + R L GI + G Q Sbjct: 287 VFPVS-IEAKNNLLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQA 345 Query: 286 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 345 +R A+ +G V+VLVATDV ARGIDI DV +V NFD+P Y+HRIGRT RAG Sbjct: 346 QRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGEL 405 Query: 346 GTAISLVEAHDHLLLGKVGRYIEE-------------PIKARVIDELRPKTRAPSEKQTG 392 G AI+ V D ++ + +++ P V E P +K Sbjct: 406 GWAITFVTEQDVDEFYEIEKLMDKTADIYDAGDLHVGPNPPAVDPERDPAAFKVKKKTKR 465 Query: 393 KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE 444 SK ++ K R + G+RR G G P + Sbjct: 466 GKSKSKKKLEQARRDGKRNGDDYGDVAGRSNRGCGERR---GDGERPSRPKR 514 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 130/394 (32%), Positives = 213/394 (54%), Gaps = 7/394 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLP 61 + F+ L L+ + + L+ KGF P+ IQ AIP L D++G A TGTGKTAA+ LP Sbjct: 1 MDKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 +Q + P+ LIL PTRELA+QV++ + K + T+ GG M+ Sbjct: 61 IVQKI----EPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKR 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+VVAT GR + +I++ + ++E L+LDEAD ML+MGF +D+E + + Sbjct: 117 ALKKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDD 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 + L+FSAT+ ++ AE + + + + A T + I Q Y A E+K A L Sbjct: 177 RTVLMFSATMP-PRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYP-ENKFAALCR 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + I+F R + V +++ L G Y+ G++ Q R +KR +++ Sbjct: 235 IMDLEKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISL 294 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARGID+ D+SH+ NF +P ++Y+HRIGRT RAG+ GTAI+L+ + + Sbjct: 295 LIATDVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMS 354 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPS 395 + + + R + + +K + + + Sbjct: 355 FIEKKTGAKTERRKLPFGEEMIKLRIQKLSKELA 388 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 148/427 (34%), Positives = 227/427 (53%), Gaps = 10/427 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +TTF++L+L+ + +A+ + G+ PT IQA AIPPAL GRDVLG A TGTGKTA++ LP Sbjct: 9 PMTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLP 68 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + +L R ++ PR L+L PTRELA QV+++ AKH L A + GGV++ + Sbjct: 69 MIT-MLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQ 127 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+++AT GRLL + + V+ +++DEADRMLDMGF DIE I G + Sbjct: 128 AIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFT 187 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEH------K 235 +QTL FSAT+ I+ L +P ++ + I Q K Sbjct: 188 RQTLFFSATM-APEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMK 246 Query: 236 TALLVHLLKQPEA--TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 293 +L + +I+F ++ V +A L++ +N + G++ Q R + Sbjct: 247 RDMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAG 306 Query: 294 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 +G + +LVA+DVAARG+DIP+VSHV N+D+P + Y+HRIGRT RAG+ G AI+L Sbjct: 307 FRDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCV 366 Query: 354 AHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 D LG + I++PI +A +E + + + K + K+ + Sbjct: 367 PSDEKYLGAIEGLIKQPIPRAEAPMDAGTPKAETEDKPRRSRRGGRRSEEPKAEEKQADA 426 Query: 414 PRVKKRH 420 R Sbjct: 427 APEPARE 433 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 151/419 (36%), Positives = 214/419 (51%), Gaps = 3/419 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F +L A+ + G+ T +Q AIP G DVL SA TGTGKTAA+ LP L Sbjct: 1 MKFESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60 Query: 64 QHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 Q + + P + R LILTPTRELA QV+D+ +KH ++ + TI GG+ A+ Sbjct: 61 QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQK 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 + DI+VAT GRLL++I N VE L+LDEADRMLDMGF+ DI+ I ++ Sbjct: 121 LKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKR 180 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 Q LLFSAT A++ A +L+ P +SA+ + Q Y + K LL L Sbjct: 181 QNLLFSATFST-AVKKLANDMLDKPKIISADKQNTTAATVSQVVYPV-EQRRKRELLSEL 238 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 + + +VF R +L L GI + + GE QG R A++ EG+V VL Sbjct: 239 IGTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVL 298 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VAT+VAARG+DI + +V N+D+P + Y+HRIGRT RAG+ G AIS V + L Sbjct: 299 VATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLAD 358 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I + I+ + +R K K + + + + R Sbjct: 359 IEKLIGQKIRRITVPGYEVSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGEKNMQGRR 417 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 144/428 (33%), Positives = 215/428 (50%), Gaps = 6/428 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M +EL++ + +AL +G++ T IQA AIP L+G D+LG A TGTGKTAA+ + Sbjct: 1 MKQVLLNELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAI 60 Query: 61 PALQHLLDFP--RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 P LQ L K R L+L PTRELA Q+++ + L I GGV Sbjct: 61 PILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAP 120 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 + DI+VAT GRLL I + D VE +LDE D+MLDMG D++ I Sbjct: 121 QTRKLEKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYL 180 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 +Q +LFSAT+ + I+ A+ +L+ PV+++ P I Q Y D +K AL Sbjct: 181 PRERQNMLFSATMPVE-IEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKA-NKAAL 238 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L + LK E +VF R + ++ L + G + G Q R +A+ + + Sbjct: 239 LTYWLKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRK 298 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +LVATD+AARG+DI ++SHV N+++P +TY+HRIGRT RAG G AI+ + + Sbjct: 299 TRILVATDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKP 358 Query: 359 LLGKVGRYIEEPIKA--RVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 LL + + I + + L P K + + + K A K A ++ Sbjct: 359 LLRDIQKRIGKTLPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAH 418 Query: 417 KKRHRDTK 424 + + K Sbjct: 419 RAKPNPRK 426 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 154/440 (35%), Positives = 227/440 (51%), Gaps = 7/440 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+ TF E L + L A+ D G+ PT IQ AIP L+GRD++ +A TGTGKTAA+ LP Sbjct: 5 TIATFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 + L K P ++I+TPTRELAMQ+S+ +AK T+ + T+ GGV+Y + Sbjct: 65 TMDKLPYAG--KGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIK 122 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 DI++AT GRLL +++ D V+ L+LDEADRMLDMGF + I T Sbjct: 123 KLRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSE 182 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QTLLFSAT++ LL P + + + Q+ E K ALL Sbjct: 183 RQTLLFSATIDRSQ-DKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRRE-KPALLNA 240 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +++ R IVF + + L + GI + + Q +R A++R EG+ +V Sbjct: 241 FIREKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHV 300 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 +VATDV ARGID+P+V +V N+D+P + Y+HRIGRT RAG G A+S V LL Sbjct: 301 IVATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLR 360 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + ++I E I+ + S++ A + + + K +K K R Sbjct: 361 SIQKFIGEDIQVMEFKAGEDAYEPVGKDHALAASEEEHAPKRKDRDKKNGKKGGRKHDDR 420 Query: 422 DTKNIGKR---RKPSGTGVP 438 K G++ R+ + P Sbjct: 421 GGKKGGRKHDDREGARDDAP 440 >UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME Length = 703 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 126/395 (31%), Positives = 200/395 (50%), Gaps = 10/395 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+E +LE + GF++P+ IQ+ A P L G D++G A TGTGKT A+LLP + H Sbjct: 288 FAEY---PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 344 Query: 66 LLDF--PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 PR G +L+L PTRELA+Q+ ++ + + + GG Sbjct: 345 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGGGNRNMQISDL 403 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +I++ T GRL I D + L+LDEADRMLDMGF I + + R +Q Sbjct: 404 ERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQ 463 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLVHL 242 T++ SAT ++ A+ +++P++V + Q +D K + Sbjct: 464 TIMTSATWP-PGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSF 522 Query: 243 LKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 +K + I+F ++ R +L++ L G + G Q R +AI + G V + Sbjct: 523 VKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 582 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVA+RG+DI D++HV N+D P + + Y+HR+GRT RAGR+GT+IS D + Sbjct: 583 LVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAK 642 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 ++ ++E + V DEL R + + ++ Sbjct: 643 ELIEILQEA-EQEVPDELHNMARRFKAMKDKRAAE 676 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 150/430 (34%), Positives = 246/430 (57%), Gaps = 7/430 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F+ L++ +QD + PT IQ AIP ++G+D++G A TGTGKTAA++LP L Sbjct: 3 KSFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPIL 62 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L + R + LILTPTREL++Q++ +L KH ++++ ++ GG Sbjct: 63 NALDEGKR----DIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKL 118 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E IVV T GR+L ++K + + TL+LDEAD+M++MGF +D+E + T ++Q Sbjct: 119 KETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQ 178 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSAT+ D ++ A R ++ P + + ++I Q+YY + + KT LV +L Sbjct: 179 VLLFSATMP-DLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSD-KTDALVDVL 236 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +Q + +IVF + RV +L L+E G++ L G++ Q KR + +K+ E R L+ Sbjct: 237 EQEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLI 296 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARG+D+ V+HV N+D+P D+Y+HR+GRT RAG+KG AISL+ L+ + Sbjct: 297 ATDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARF 356 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + + I+ R++ E R A ++ + + RA++ K ++KEK + R+ Sbjct: 357 AKATKASIEERILQEGR-HLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSPVREA 415 Query: 424 KNIGKRRKPS 433 + KP Sbjct: 416 IKKKTKVKPG 425 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 140/410 (34%), Positives = 221/410 (53%), Gaps = 4/410 (0%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF+ ++L + ++ AL+ G+ PT IQA IP AL+G DV+G A TGTGKTA++++P L+ Sbjct: 13 TFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILE 72 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 L + + P+ LIL PTRELA+QV D +L++ ++ A + GG + + Sbjct: 73 LLDI--ERGAPTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLK 130 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 + +VV T GR+L +I D +E ++LDEADRMLD+GF DIE I +QT Sbjct: 131 KGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQT 190 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LL SAT+ I A+R + +P ++ +P+ I Q Y+ + + K LL+ LL Sbjct: 191 LLLSATVPPP-IAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTV-EHDRKFDLLMKLLL 248 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 + E ++IVF R + ++ L + N + G++ QG+R+ + +G V LVA Sbjct: 249 REEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVA 308 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDV RGID+ VSH+ NFD+P D Y+HR+GRT R GR+G A + V + L ++ Sbjct: 309 TDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIE 368 Query: 365 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 I + +K + + P + +V++ + P Sbjct: 369 ERINKLLKRDEMRDFEPVGYGERSARAPAAPTQVISGKYMHGGNASGVAP 418 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 143/417 (34%), Positives = 214/417 (51%), Gaps = 6/417 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 T F+ + +D + L G P+ IQ +IP + GRD+LG A TGTGKTAA+ LP L Sbjct: 67 TAFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPML 126 Query: 64 QHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LL+ R + R LIL PTRELA Q++++ A T + + GG + + Sbjct: 127 TRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQR 186 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 D+++AT GRL+ I+ D L+LDEAD+MLD+GF + IA + Sbjct: 187 LERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRER 246 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 QTLLFSAT+ +++ A+ L DP+ V+ NP + +KI Q + + + K LL Sbjct: 247 QTLLFSATMPK-LMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGD-KATLLAEY 304 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L + +IVF R + +L L + G + G QG+R A+ G VL Sbjct: 305 LSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVL 364 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+DIP V+HV+N+D+P + Y+HRIGRTARAGR G AI+ + L Sbjct: 365 VATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRA 424 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + ++ I A ++ G P+ + ++ + P+ +R Sbjct: 425 IEKAMKAKIAVV---GGEEPFEAAKIRERGGPAGRPAQGARKRPARRPSRAPKTAQR 478 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 154/409 (37%), Positives = 212/409 (51%), Gaps = 6/409 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F+ L + +LL L + G+ PT IQ AIP L GRD+LG A TGTGKTAA+ LP Sbjct: 6 SSASFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALP 65 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 LQ L P L+L PTRELAMQV++ + + + ++ GG + Sbjct: 66 LLQRLEIGGEP-PRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLR 124 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 +VVAT GR L +I + T++LDEAD MLDMGFA+ +E I T Sbjct: 125 ALRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGA 184 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRER---KKIHQWYYRADDLEHKTAL 238 +QT+LFSATL I A R L +PV V ++ Q Y HK+A Sbjct: 185 RQTVLFSATLP-PRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRA-HKSAA 242 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L +L + + +I+F R R V EL LR G L G Q R+ + R G Sbjct: 243 LTRVLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGT 302 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +LVATDVAARG+DI VSHV N+D+P + + Y+HRIGRT RAGR+G AI+LVE +H Sbjct: 303 AELLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHY 362 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK 407 L+ V R + I+A + + E + ++ AE+ + Sbjct: 363 LIRNVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFR 411 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 132/392 (33%), Positives = 194/392 (49%), Gaps = 14/392 (3%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 VT+F EL+L + + +TRPT +Q A+P + RD++ A TG+GKTAA+L+P Sbjct: 210 VTSFLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPL 269 Query: 63 LQHLLDFPRK--------KSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGV 114 L + K P LIL PTRELA+Q+ D AR+ + + + + GG Sbjct: 270 LSMMYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFSYRSLVRPCVVYGGR 329 Query: 115 AYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174 + S+ +++VAT GRL ++ + L+LDEADRMLDMGF I I Sbjct: 330 DIRGQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKI 389 Query: 175 AGET----RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD 230 +T ++QTL+FSAT + IQ A L+D + + + I Q D Sbjct: 390 VEQTNMPPPGQRQTLMFSATFPRE-IQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVD 448 Query: 231 DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 290 + E + LL L + +VFV + L +L G + G+ Q R A Sbjct: 449 ENEKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELA 508 Query: 291 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 350 ++ EG +LVAT VAARG+DIP+V V N+D+P + Y+HRIGRT R G G AIS Sbjct: 509 LQSFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAIS 568 Query: 351 LVEAHDHLLLGKVGRYIEEPIKARVIDELRPK 382 ++ + ++ + V D LR K Sbjct: 569 FYTDKNNNVAKELVDIL-LEANQIVPDWLRDK 599 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 166/432 (38%), Positives = 242/432 (56%), Gaps = 2/432 (0%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+ L LD L+ AL+ T PT +QA A+P L GRD++ SA TGTGKTAA+LL Sbjct: 1 MQTNAFAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNH 119 PAL LL P +S PRIL+L PTREL QV+ A+E + K +++A++ GG ++ Sbjct: 61 PALSRLLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQ 120 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 ++ + +++VAT GRL+ ++ D +E L+LDEADRMLDMGF++D+ IA + Sbjct: 121 NQMLTRPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLP 180 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT F+AT+ + DFA+ LL +P ++ T + + I Q DD++HK L+ Sbjct: 181 KARQTAFFTATMTR-RVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLV 239 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 H+L QP+ ++IVFV + LA+ L GI L G+M Q R + RL G+ Sbjct: 240 RHILSQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQT 299 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 VLVATDVAARGID+ +SHV NFD+PR + Y+HR+GRT RAG GTA+SLV D Sbjct: 300 EVLVATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFP 359 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 L K+ R+ + + I+ + + + ++ G K R Sbjct: 360 LKKIERFTGQKLIVTEIEGMIARFKPQERREGGGGRGGFGGKPRHGNGQGRSYGDRSSAP 419 Query: 420 HRDTKNIGKRRK 431 +RR+ Sbjct: 420 RGGFGGHQQRRE 431 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 120/400 (30%), Positives = 195/400 (48%), Gaps = 25/400 (6%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T+F +++L E + + + +PT +Q AIP ++GRD++ A TG+GKTAA+L+P Sbjct: 293 NITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVP 352 Query: 62 ALQHLLDFPR-----------KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATI 110 L + + ++ P L+L PTRELA Q+ + A++ A + + A + Sbjct: 353 ILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVL 412 Query: 111 TGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 GG ++VAT GRL I + L+LDEADRMLDMGF Sbjct: 413 YGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQ 472 Query: 171 IEHIAGE--TRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWY 226 I I + ++QTL+FSAT IQ+ A L + + ++ + I Q Sbjct: 473 IRRIVEQLNMPPTGQRQTLMFSATFPKQ-IQELASDFLSNYIFLAVGRVGSTSENITQTI 531 Query: 227 YRADDLEHKTALLVHLL------KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEG 280 + + ++ LL L + + + +++FV ++ L +L + + G Sbjct: 532 LWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHG 591 Query: 281 EMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTA 340 + Q +R EA++ G +LVAT VAARG+DIP V HV NFD+P + Y+HRIGRT Sbjct: 592 DRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG 651 Query: 341 RAGRKGTAISLVEAHDHLLLGKVGRYI---EEPIKARVID 377 R G G A S + + + + ++ I + + D Sbjct: 652 RMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMED 691 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 142/422 (33%), Positives = 211/422 (50%), Gaps = 2/422 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F L L + L+ A+ +G++ T IQ AIP L D+L A TGTGKTAA+ LP L Sbjct: 1 MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L K R LI+TPTRELA QV+ + ++ + GGV Sbjct: 61 QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E D+++AT GRLL ++ +E L+ DEADRMLD+GF D++ I ++Q Sbjct: 121 QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT I+ FA +L P + + + Q ++ + K+A L+ L+ Sbjct: 181 TLLFSATFSKQ-IKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQA-RKSAALIQLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 +Q ++++VF+R + L L +AGI + Q R +A+ G + VLV Sbjct: 239 QQHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ + V N+D+P + Y+HRIGRT RAG GTAISL + L + Sbjct: 299 ATDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSL 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 RY+++ +K + PK + K + +V + + E K K Sbjct: 359 ERYLDQHLKPSTLVGFAPKDQVTKSWSANKANTRVNSAEKPTSRNMENTKHVKGKPPAAK 418 Query: 424 KN 425 N Sbjct: 419 LN 420 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 141/388 (36%), Positives = 208/388 (53%), Gaps = 7/388 (1%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F L +L+ + + GF P+ IQ AIP L+G+D++ A TGTGKTAAY LP L Sbjct: 17 FQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNR 76 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 + K ++L+LTPTRELA+QVSD +L KH + TI GG +Y ++ Sbjct: 77 I-----KVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK 131 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 + VAT GRLL +K + +ILDEAD MLDMGF DIE I ++QTL Sbjct: 132 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 191 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 LFSAT+ + I+ A + P V + + K I Q YY D+ E + +V +L Sbjct: 192 LFSATMP-EPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAE-REIAVVRILDY 249 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 ++I+F + ++ +L + L G L G++ Q +R + +K L +GRV +LVAT Sbjct: 250 ENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVAT 309 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ D+S V N+ +P ++Y HRIGRT RAG+ G A++LV + L ++ Sbjct: 310 DVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKG 369 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGK 393 + + + + E K Sbjct: 370 TSGTNLTIAALPTKKEVHLSREEDFLKK 397 >UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/Metazoa group RepID=DBP2_ENCCU Length = 495 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 128/414 (30%), Positives = 202/414 (48%), Gaps = 6/414 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + F E ++ +L +KGF+ PTAIQ P AL GRD++G A TG+GKT +++LP Sbjct: 85 PIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILP 144 Query: 62 ALQHL-LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 AL H P ++ P +L+L PTREL MQ+ E +L + GG + Sbjct: 145 ALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQI 204 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E ++V+AT GRL+ + + V L+LDEADRMLDMGF + I +T Sbjct: 205 RALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNA 264 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALL 239 +QTL++SAT + ++ AE + + ++V + KI Q E K L Sbjct: 265 NRQTLMWSATWPRE-VRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGRE-KEDKL 322 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 + +L + + IVF + +L L +G L G+ Q R++ + GR Sbjct: 323 IGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRR 382 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHL 358 +L+AT+VA RG+D+ DV V NFD P S + Y+HRIGRTAR ++G + + D Sbjct: 383 PILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKA 442 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++ R + E V +L R +++ + ++ R + + Sbjct: 443 NARELIRMLREA-NQTVPSDLEDMVRVSNDRYGSRSTRHGYDYRGRAGRFPYRG 495 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 148/407 (36%), Positives = 220/407 (54%), Gaps = 7/407 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 ++ TF +L L +LEA++ G+ P+ IQA AIP L G ++LG+A TGTGKTAA+ LP Sbjct: 122 SLVTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLP 181 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA-KHTHLDIATITGGVAYMNHA 120 L + R+ S +L+LTPTRELA+QVSD ++ A K ++ + + GG Sbjct: 182 LLSRINFNGRETS----MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQL 237 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 IVVAT GRL+ +IK + AV+ ++LDEAD MLDMGF +D+E I E Sbjct: 238 RALKRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPA 297 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q LFSAT+ D+++ ++ L + E T + I Q Y EHK L Sbjct: 298 DAQRALFSATMP-DSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLV-KNEHKIEALA 355 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L+ E ++FVR ++ E+A L G N L G++ Q R I RL G+++ Sbjct: 356 RVLEGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLD 415 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 ++VATDVAARGID+ +S V N+D+P ++Y+HRIGRT RAGR G AI + + +L Sbjct: 416 IVVATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRML 475 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK 407 + + +PI + ++ + K V ++ K Sbjct: 476 KTIEKATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFK 522 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 154/401 (38%), Positives = 230/401 (57%), Gaps = 7/401 (1%) Query: 19 LQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFP----RKKS 74 + KG+ +PTAIQA AIP L GRD++ SA TGTGKTAA+ LP LQ L+D + K+ Sbjct: 40 VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99 Query: 75 GPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134 +L+L PTRELA+QV+ + + A +T + I GGV+ A + D++VAT Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159 Query: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGD 194 GRLL +++ + +E L+ DEADRMLDMGF +I I + ++QTLLFSAT Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSS- 218 Query: 195 AIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVF 254 AI + +++LL+ P+ + + + I Q Y D E KT LL HL+ + + +VF Sbjct: 219 AIFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVD-SERKTELLCHLINKSAWQQVLVF 277 Query: 255 VRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 314 RK++ +A + AGI G++ QG R + + +G++ LVATDVAARG+DI Sbjct: 278 SRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDI 337 Query: 315 PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKAR 374 ++ V N+++P + Y+HRIGRT RAG G AI+L D LLL +V I++ + + Sbjct: 338 VELKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQQ 397 Query: 375 VIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415 ++ P E T K SK +RA+K+ ++ R Sbjct: 398 WLEGFEPDL-TKLEPVTRKNSKAAQRQRAKKRALGADKRRR 437 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 134/406 (33%), Positives = 213/406 (52%), Gaps = 7/406 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPA 62 F +L + ES++E L +KGFT T IQ AIP LD DV+G A TGTGKT A+ +P Sbjct: 1 MEFRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPI 60 Query: 63 LQHLLD----FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 +Q + + RK + +ILTPTRELA+QV D + K L + T+ GG + Sbjct: 61 IQKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEK 120 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 DIV+ T GR++ ++ ++ L+LDEAD ML++GF D+E I + Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 + + LLFSATL +I + E + + + + Q YY + + K L Sbjct: 181 KEDCRKLLFSATLPK-SIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHD-KFEL 238 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L ++ + +VF + + V +L L + ++ L G+M Q +R A+ R + Sbjct: 239 LRRIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHK 298 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 +++++ATDVAARGIDI +++HV N+D+P++ + Y+HRIGRT RAG KGTAI+ VE + Sbjct: 299 IDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFR 358 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + + + K I ++ GK + + + +E Sbjct: 359 RFKYIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSE 404 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 149/401 (37%), Positives = 218/401 (54%), Gaps = 7/401 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T F L L + +A+++ G+ PTAIQ+ IP L GRD+LG A TGTGKTAA+ LP Sbjct: 7 TSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALP 66 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 L L P++L+LTPTRELA+QV++ + A ++ I GG Y Sbjct: 67 MLSRL----DPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQL 122 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 N ++V T GR++ +I+ ++ L+LDEAD ML+MGFA+DI+ I + Sbjct: 123 SQLKRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPA 182 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +Q LFSAT+ AI+ A+ L DPVEV ++ I Q + HK +L Sbjct: 183 ERQVALFSATMP-PAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRF-HKLDVLT 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +++ ++FVR + ELA+ L+ G L G+M Q R ++RL +G+++ Sbjct: 241 RIMELEPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLD 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDVAARG+D+ +SHV N+D+P Y+HRIGRT RAGR G AI LVE + LL Sbjct: 301 VLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 + R I PI + + + ++ G+ K + Sbjct: 361 KSIERVIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQ 401 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 5/375 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F + +L + K FT PT IQA P AL G+D++G A TG+GKT +++LPAL Sbjct: 127 VKFEHAPFENEVLNNFKLKAFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSFVLPAL 186 Query: 64 QHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 H P + P +L+L PTREL +Q+ D E + ++ + GGV+ Sbjct: 187 IHARAQIPLRSGDGPIVLVLAPTRELCLQIKDVFDEYCRFFNMRCTAVYGGVSSYTQKRD 246 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 S ++VV GRL+ ++ V L+LDEADRMLDMGF ++ I T + Sbjct: 247 ISMGCEVVVGCPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPDR 306 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALLVH 241 QTL++SAT + ++ AE +++ V+++ + KI Q D E K L Sbjct: 307 QTLMWSATWPKE-VRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHE-KANKLHE 364 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + + + I+F + L + L G + G+ Q R+ I G N+ Sbjct: 365 SLNEKKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNI 424 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLL 360 L+ATDVAARG+DI +V+ V N+D P + + Y+HRIGRTAR +G + S + + Sbjct: 425 LIATDVAARGLDIKNVALVINYDFPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACA 484 Query: 361 GKVGRYIEEPIKARV 375 ++ + ++E + Sbjct: 485 KELVKILKEANQDVP 499 >UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE69 Length = 610 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 117/394 (29%), Positives = 196/394 (49%), Gaps = 9/394 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F E L + ++ ++ + PT IQ+ P AL G++++G A TG+GKT ++LP Sbjct: 199 PIFSFEETGLADDVINIVRKLNYFAPTPIQSQGWPIALSGQNMVGIARTGSGKTLGFVLP 258 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P+ + G P L+L PTREL Q + A A+ + + + GG Sbjct: 259 AVIHIQHQPKLERGDGPIALVLAPTRELVQQTQNVAIPFARASGIRSVAVYGGSDKYGQD 318 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +I VAT GRLL ++ + L+LDEADRM DMGF I I + R Sbjct: 319 RHLRNGTEICVATPGRLLDFLNSGTTNLERCTYLVLDEADRMFDMGFEPQIRSIIDQIRP 378 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE-RKKIHQWYYRADDLEHKTAL- 238 +Q L++SAT + I+ AE L+D ++++ I+Q + K L Sbjct: 379 DRQVLMWSATWPKE-IKRLAEEYLKDYIQLNVGSQELTANPNINQIVHVCQSERDKKKLQ 437 Query: 239 -LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 ++ + + + ++++F +++ +A WL++ G L G Q R+ ++ G Sbjct: 438 NVLKEIGEQDEIKTLIFTATKQKSDSIAFWLQDLGYRCDSLHGGKTQKNRDFILR----G 493 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 R+ +LVATDVAARG+D+ D+ +V N+D P + + Y+HRIGRT R GT+ + + D Sbjct: 494 RIKILVATDVAARGLDVSDIRYVINYDYPNNMEDYIHRIGRTGRHNATGTSYTFLTDEDA 553 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQT 391 G + + E + D A K+ Sbjct: 554 SKAGDLISVLREANQNVDPDLENLAMSAARPKKG 587 >UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax=Brugia malayi RepID=A8P4I3_BRUMA Length = 754 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 130/457 (28%), Positives = 217/457 (47%), Gaps = 21/457 (4%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F++L+L + ++ G+ RPT +Q +IP ++ RD++ A TG+GKTAA+L+P + + Sbjct: 291 FADLKLHPWIEGNIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 350 Query: 66 LLD------------FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGG 113 +L ++ P LIL+PTREL++Q+ + +R+ A T + A + GG Sbjct: 351 VLQAGPEALYKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGG 410 Query: 114 -VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 172 Y I++AT GRL+ +++ L+LDEADRMLDMGF I Sbjct: 411 RENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQIR 470 Query: 173 HI--AGETRWRKQ--TLLFSATLEGDAIQDFAERL-LEDPVEVSANPSTRERKKIHQWYY 227 I + + Q T +FSAT + IQ A+ + + V ++ + I Q Sbjct: 471 QIVDLSKMPPKGQRVTAMFSATFPKE-IQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIV 529 Query: 228 RADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 287 ++ E K+ L+ L + ++VFV + +LA +L++ G N + G++ Q R Sbjct: 530 WVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDR 589 Query: 288 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 347 + ++ G +LVAT VAARG+DIP+V HV N+D+P D Y+HRIGRT R G G Sbjct: 590 EKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGL 649 Query: 348 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK 407 A S + + + + E + + E K A +++ +P + R + Sbjct: 650 ATSFFNDKNRNIARDLAELVVEANQE--LPEWLEKISADAQRYGTRPGRAKGGSRFGGRD 707 Query: 408 AKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE 444 + + +N + PQ T Sbjct: 708 HRVQYTGGSGGGGSHRQNGINYSPSNNQWNQPQRTAR 744 >UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=Gammaproteobacteria RepID=A0KXT6_SHESA Length = 491 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 151/432 (34%), Positives = 225/432 (52%), Gaps = 2/432 (0%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 FS+L L +L++A+ + G+T PT IQ AIP L G++VL +A TGTGKTA+++LP L Sbjct: 1 MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 D P+ + R +ILTPTRELA+QV ++ + AK+ L + GGV + Sbjct: 61 HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E D++VAT GRLL + V L+LDEADRMLDMGF +DI I + ++Q Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 LLFSATL ++ A+ + D +E+ + + I QW D + K+ALL HL+ Sbjct: 181 NLLFSATLSKQ-VKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDK-DKKSALLSHLI 238 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 ++ +++++F++ + +L + L + GI Q R + + G+V+ LV Sbjct: 239 QEQNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLV 298 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 AT VA+RGIDI ++ V N+D+P D Y+HRIGRT RAG +G AIS V D L + Sbjct: 299 ATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAI 358 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 R + I R I PK P P +R A+ + R + Sbjct: 359 ERRLGHVIVRREIAGFEPKKVVPISILDFVPKSASKTERKPNSPAETNLQSRPYSSGKPG 418 Query: 424 KNIGKRRKPSGT 435 + K + Sbjct: 419 TFEATQAKKHRS 430 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 156/393 (39%), Positives = 209/393 (53%), Gaps = 3/393 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T +F+ L L + LL LQD + PT +Q AIP L G+DV+ A TGTGKTA + LP Sbjct: 33 TSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALP 92 Query: 62 ALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 LQ L+ P S R+L+L PTRELA QV K L GGV+ Sbjct: 93 LLQRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQM 152 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + D++VAT GRLL ++ VETL+LDEADRMLD+GFA+++ + Sbjct: 153 MKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPV 212 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++QTLLFSAT D I+ A +L PV +S +P KI QW D +K L + Sbjct: 213 QRQTLLFSATF-TDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDK-RNKPDLFM 270 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 HL+ + ++VFV+ R V LA L EAG + G+ Q R A++R G V Sbjct: 271 HLVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQ 330 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+DI D+ V N D+P Y+HRIGRT RAG G A+SLV A + L Sbjct: 331 MLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQL 390 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGK 393 + I + ++ + R P TG+ Sbjct: 391 AAIEALIGQTLRREEEPGFEAEHRVPETSSTGQ 423 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 135/402 (33%), Positives = 206/402 (51%), Gaps = 8/402 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M + F++L + ++ AL+ GFT T IQ AIP + G D++G A TGTGKT A+ + Sbjct: 1 MAIL-FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 P ++ + LILTPTREL QV +L K L + TI GG +Y Sbjct: 60 PMVEK----TDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQ 115 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + I+VAT GR++ +I D + TL LDEAD ML MGF DIE I T Sbjct: 116 FKELDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSAT+ I+ A+ ++P + + +I Q Y+ + E K +LL Sbjct: 176 ETRQTVLFSATMPA-FIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKE-KQSLL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 LL + +I+FV + + L++AG L G++ Q +R + R ++ Sbjct: 234 ERLLDFENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQL 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++LVATDVAARG+D+ DV + N+D+P+ + Y+HRIGRT RAG+KG A + V + Sbjct: 294 SILVATDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRM 353 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK 401 L + Y + IK + + + K ++ + Sbjct: 354 LDMLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANE 395 >UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Proteobacteria RepID=C6E4K1_GEOSM Length = 490 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 147/443 (33%), Positives = 226/443 (51%), Gaps = 8/443 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F+EL++ + + + + GFT+ T IQ A+P AL G+DV G A TGTGKTA +L+ Sbjct: 1 MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 64 QHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 LL + PR LIL PTREL +Q+ A+ L K+T +I I GGV YM + Sbjct: 61 TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW-- 180 DIV+ T GRL+ Y+K++ + + VE L++DEADRM DMGF D+ I Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LLFSATL + + A + P +VS P +++ Q Y E K LL+ Sbjct: 181 KRQNLLFSATLNT-RVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKE-KFPLLL 238 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL++ R+++FV + L + L + G++ Q KR + + +G + Sbjct: 239 GLLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLP 298 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +++ATDVA+RGI I VSHV N+D+P+ + Y+HRIGRTARAG +G AIS + + Sbjct: 299 IMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYI 358 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 + +I++ I ++ K + + + +K R + Sbjct: 359 EPIEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELPHGRGGKPGDRGRSGDKGRPGDKG 418 Query: 421 RDTKNIGKRRKPSGTGVPPQTTE 443 R G+ R SG+ P + Sbjct: 419 RP---AGRSRSASGSDKPAGEKK 438 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 144/393 (36%), Positives = 218/393 (55%), Gaps = 7/393 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +FSEL L + +L AL D G+ +P+ IQ IP L G DVLG A TG+GKTAA+ LP L Sbjct: 7 SFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLN 66 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVF 123 ++ K P+I+ILTPTRELA+Q+ L+K+ ++I + GG Y + Sbjct: 67 NI----DLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSL 122 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 N IVV T GR+L + ++ + + + +LDEAD ML MGF +D+E+I ++ + Q Sbjct: 123 KRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQ 182 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T+LFSAT+ AI +R ++ P E+ S R I Q Y+ L K L+ L Sbjct: 183 TILFSATMPA-AIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGL-CKIEALLRFL 240 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + I+FVR + E+++ L + G N+ L G+M Q R + + R G +++LV Sbjct: 241 EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILV 300 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARG+D+ +S V N+D+P ++Y+HRIGRT RAGR G A+ VE + +L + Sbjct: 301 ATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNI 360 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 R I+E + + + + + K Sbjct: 361 ERNIKEKLSQIKLPSVELLCKKRLNNFSEKIKN 393 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 149/431 (34%), Positives = 225/431 (52%), Gaps = 5/431 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M ++++ L + AL+ + +P+ IQAA IP AL+GRDVLG A TGTGKTAA+ + Sbjct: 1 MADINYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P ++ L P S P+ LILTPTRELA+QV D +L +++ + GG + Sbjct: 61 PIIERLEHGP--NSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQM 118 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E IVV T GR++ + + T++LDEADRMLD+GF DIE I Sbjct: 119 EKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPE 178 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLL SAT+ I+ A+R + +P +V +P+ + I Q Y+ D K +LV Sbjct: 179 ERQTLLLSATVP-PTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHS-KKFDMLV 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LLK+ + ++IVF R + + L + + G+M QG RN A+ + Sbjct: 237 ELLKREQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFR 296 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDV RGIDI DVSH+ N+D+P D Y+HR+GRT R G++G A + V + L Sbjct: 297 VLVATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNEL 356 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420 ++ I++ + + P R + G P+ + +K+ E+P+ + Sbjct: 357 TRIEVRIDKLLIRDELPGFAPYERTDVDTGPG-PAATAIGPDGQKEVGMVTEEPKAEPPK 415 Query: 421 RDTKNIGKRRK 431 + RK Sbjct: 416 SLKSRAKRYRK 426 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 200/378 (52%), Gaps = 8/378 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPAL-DGRDVLGSAPTGTGKTAAYLLP 61 + TF EL + +L+A+++ G+ P +Q IP L +G DV+ A TGTGKTAA+ LP Sbjct: 1 MKTFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 +Q + K P+ LIL PTREL +Q++ + +K+ L I + GG + + Sbjct: 61 LIQKV----DVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQI 116 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + I+VAT GRL+ I+ + + +++DEAD ML+MGF I I + Sbjct: 117 RMLKTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPE 176 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + TL+FSAT+ I A++ L D E++ K ++ Y + K A L Sbjct: 177 DRNTLMFSATM-SPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLV-HAKDKYAALK 234 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 + I+F R R+ E+A+ L + G N L GE+ Q +R+ +++ + + Sbjct: 235 RIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQ 294 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ D++HV N+ +P ++Y HR GRT RAG+ G +I+++ + + Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKM 354 Query: 361 GKVGRYIEEPIKARVIDE 378 ++ R I + + Sbjct: 355 REIERIINKKFIMGEMPS 372 >UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA Length = 688 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 126/395 (31%), Positives = 204/395 (51%), Gaps = 10/395 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F+E LL + GF +P+ IQ+ A P L G D++G A TGTGKT A+LLP + H Sbjct: 273 FAEY---PDLLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 329 Query: 66 LLDF--PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 PR G +L+L PTRELA+Q+ ++ + ++ + GG Sbjct: 330 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYS-FRNMKAVCVYGGGDRRMQISDL 388 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +I++ T GRL ++ D + L+LDEADRMLDMGF I + + R +Q Sbjct: 389 ERGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQ 448 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLVHL 242 T++ SAT ++ A+ +++P++V + Q +D K + + Sbjct: 449 TIMTSATWP-PGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSF 507 Query: 243 LKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 ++ + I+F ++ R +L++ L G + G Q R +AI + G V++ Sbjct: 508 VRNMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHI 567 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVA+RG+DI D++HV N+D PR+ + Y+HR+GRT RAGRKGT+IS + D + Sbjct: 568 LVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAK 627 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSK 396 ++ ++E + V DEL R + + ++ Sbjct: 628 ELIDILQEA-EQEVPDELHNMARRFKAMKEKRAAE 661 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 137/410 (33%), Positives = 205/410 (50%), Gaps = 9/410 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG-RDVLGSAPTGTGKTAAYLLPA 62 +F L L E+ L A++ KGF++PT IQ IP L G D++G + TGTGKTAA+ LP Sbjct: 1 MSFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ + +K + +IL PTRELA+QV+D + L + + + GG Sbjct: 61 IEAI----DEKEKSVQAIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRA 116 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182 +VV T GR+L +I+ D V+ ILDEADRMLDMGF DIE I ET +K Sbjct: 117 LERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKK 176 Query: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242 + L+FSAT+ + I A R + D + + + Q Y K + L + Sbjct: 177 RVLMFSATMPRE-ILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPA-RKFSTLKKI 234 Query: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302 L IVF + EL+ LR+ G + L G+M Q R R R +L Sbjct: 235 LSDDFYG--IVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292 Query: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362 VATDVAARG+D+ D+SH+ N+ +P + + Y+HRIGRT R G+KG A++ + + L Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRY 352 Query: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 + I+ + E P+ K+ +P + R + + + Sbjct: 353 IASVAGVDIQKSELSEELPREYHERYKREERPQRYRKNGRRDYSRGYSRR 402 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 138/378 (36%), Positives = 209/378 (55%), Gaps = 7/378 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V TF E +L + L++ ++ +T PT IQ +IP GRD++ A TG+GKTAA+LLP Sbjct: 1011 PVKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLP 1070 Query: 62 ALQHLLDFP-RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L H+LD + G P+ +I++PTRELA+Q+ + AR+ A +++L I + GG + Sbjct: 1071 ILNHILDKGYELEIGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQN 1130 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE--T 178 E ++ I++AT GRLL +++ ++LDEADRMLDMGF++ + I Sbjct: 1131 ESITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTM 1190 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL 238 R QTL+FSAT + IQ A L D V V+ + Q Y D +K A Sbjct: 1191 RKEHQTLMFSATFP-EEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKF-NKRAK 1248 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L+ +L+ +IVFV + LA++ E + G+ +Q +R +A++ G+ Sbjct: 1249 LMEILRDGADG-TIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGK 1307 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV-EAHDH 357 + VL+AT VA+RG+DI +VSHV N+DMP + D Y+HRIGRT R G G A S D Sbjct: 1308 MKVLIATSVASRGLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSFFDSDKDR 1367 Query: 358 LLLGKVGRYIEEPIKARV 375 L G + + +E + Sbjct: 1368 ALAGDLVKILEGSGQEVP 1385 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 138/407 (33%), Positives = 211/407 (51%), Gaps = 11/407 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + +F+++ L +S+++ + +TRPT IQA A+P AL GRD+LG A TG+GKTAA+ +P Sbjct: 122 IESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPM 181 Query: 63 LQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHA 120 +QH L P + G P L+L PTRELA Q+ + ++ A + GG Sbjct: 182 IQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQR 241 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +IVVAT GR + +++E N + ++LDEADRMLDMGF I + Sbjct: 242 SELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQ 301 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 + QTLLFSAT+ + I+ A+ L +PV+V + + Q + + E LL Sbjct: 302 KHQTLLFSATMPME-IETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLA 360 Query: 241 HLLKQ--------PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292 L+++ +IVFV ++ R E+A L G+ L G Q +R A++ Sbjct: 361 LLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALR 420 Query: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352 G N+LVATDVA+RG+D+ V+HV N D+P++ + Y+HRIGRT RAG G A S Sbjct: 421 DFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFY 480 Query: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL 399 D L+ + + I + + K E++ K+ Sbjct: 481 TDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEAR 527 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 542 bits (1398), Expect = e-153, Method: Composition-based stats. Identities = 138/411 (33%), Positives = 220/411 (53%), Gaps = 8/411 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL + ++ +++L+ GF PT IQ +IP AL G D+LG A TGTGKT A+ +P Sbjct: 12 LQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 71 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ + LIL PTRELAMQV++ RE ++ + + T+ GG+ + Sbjct: 72 IEKVV-----GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 126 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW-R 181 + IVV T GR++ ++ + TLILDEAD M++MGF D+ I + + Sbjct: 127 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 186 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ AIQ ++ ++ P + + +I ++Y +LE K + Sbjct: 187 RQTMLFSATMPK-AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTN 244 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + +IVF R + RV EL + L G L G++ Q KR E +K+ ++N+ Sbjct: 245 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 304 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI VSHV+NFD+P+ ++Y HRIGRT RAG++G A++ V + + Sbjct: 305 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 364 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++ + A + +A + K + K + K E Sbjct: 365 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKKSESRLKRISTE 415 >UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=7 Tax=Fungi/Metazoa group RepID=C4QME8_SCHMA Length = 1544 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 127/431 (29%), Positives = 196/431 (45%), Gaps = 8/431 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + + + + LL L+ F +PT IQ A+P + GRD++G A TG+GKT A+L+P Sbjct: 848 PLRNWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVP 907 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++HL G P L+L PTRELA+Q+ ++L + + GG Sbjct: 908 LMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQI 967 Query: 121 EVFSENQDIVVATTGRLLQYIKE---ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +I+V T GR++ + + ++LDEADRM D+GF + I Sbjct: 968 AELKRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIEN 1027 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QTL+FSAT ++ A ++L P+E+ + + Q + + E Sbjct: 1028 CRPDRQTLMFSATFPRQ-MEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYK 1086 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 +L L E +VFV K+E EL L + G L G + Q R+ I G Sbjct: 1087 VLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1146 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + +L+AT VAARG+D+ D+ V N+D P + Y+HR GRT RAGRKG A + + Sbjct: 1147 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQE 1206 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEK--QTGKPSKKVLAKRAEKKKAKEKEKPR 415 G V R ++ + +EL A + GK R + E E Sbjct: 1207 RSAGDVVRAFKQS-GQKPPEELMNMWNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVEAQL 1265 Query: 416 VKKRHRDTKNI 426 ++ R K Sbjct: 1266 NSEKRRLQKAA 1276 >UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=Eukaryota RepID=RH24_ORYSJ Length = 770 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 135/382 (35%), Positives = 209/382 (54%), Gaps = 7/382 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F++ L+ A+ +G+ +PT IQ A+P L GRD++G A TG+GKTAA++LP Sbjct: 217 PIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLP 276 Query: 62 ALQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + H++D P +K P ++ PTRELA Q+ A++ AK +L +A + GGV+ + Sbjct: 277 MIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 336 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +IV+AT GRL+ +K + L+LDEADRM D+GF I I G+ R Sbjct: 337 KELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 396 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWY-YRADDLEHKTALL 239 +QTLLFSAT+ ++ A +L DP+ V+ + I Q D E LL Sbjct: 397 DRQTLLFSATMPYK-VERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLL 455 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L + +VF K+ RV E+ + L + G L G+ Q R E +++ G Sbjct: 456 EKLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVY 515 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHL 358 +VLVATDVAARG+DI + V NFD+ + D ++HRIGRT RAG + GTA +L+ + Sbjct: 516 HVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 575 Query: 359 LLGKVGRYI---EEPIKARVID 377 G++ + + + ++D Sbjct: 576 FAGELVHCLIAAGQDVPNELMD 597 >UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 n=1 Tax=Hydra magnipapillata RepID=UPI000192615D Length = 745 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 133/402 (33%), Positives = 208/402 (51%), Gaps = 9/402 (2%) Query: 2 TVTTFSELELD-ESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 V TF + D +L ++ FT P+ IQ A P L G D +G A TGTGKT A+LL Sbjct: 269 PVLTFDDAFYDYPEILSTIKSNNFTEPSPIQCQAWPVLLSGMDCIGIAQTGTGKTLAFLL 328 Query: 61 PALQHLLDFP--RKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 PA H+ P R K G P L+L+PTRELA Q+ ++ + + I GG Sbjct: 329 PAFIHIDGQPIPRDKRGGPSCLVLSPTRELAQQIEMEVKKF-HYRGIRSVCIYGGGDRSA 387 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 + + +I++ T GRL + F ++V L+LDEADRMLDMGF +I+ I + Sbjct: 388 QINLVRQGVEIIIGTPGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDI 447 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTA 237 R +QT++ SAT +Q A++ L DP+ ++ + + Q + E + Sbjct: 448 RPDRQTIMTSATWP-PGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDR 506 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAG--INNCYLEGEMVQGKRNEAIKRLT 295 ++ + + I+FV ++ ++++ L G I + G+ Q R +A++ + Sbjct: 507 VMDFISAMAPDGKLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMK 566 Query: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 355 G VL+ATDVA+RG+DI D++HV N+D PR + Y+HRIGRT RAGR G A++ V Sbjct: 567 TGAARVLIATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGCALTFVTRE 626 Query: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKK 397 D + + K+ +EE V +EL + Q + +K Sbjct: 627 DWMHVAKLIPIMEEA-GQEVPEELIEMAERWKKTQDRRDEEK 667 >UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax=Eukaryota RepID=DDX3_DICDI Length = 712 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 128/455 (28%), Positives = 209/455 (45%), Gaps = 24/455 (5%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + +F++++L + LL ++ +T+PT +Q +A+P L RD++ A TG+GKTAA+L P Sbjct: 245 PLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFP 304 Query: 62 ALQHLLDFPRKKSGP-----------PRILILTPTRELAMQVSDHARELAKHTHLDIATI 110 + +L ++ P PR L+L PTRELA Q+ D A + + + + I Sbjct: 305 IISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVI 364 Query: 111 TGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 GG + DI+VATTGRL+ + ++ L+LDEADRMLDMGF Sbjct: 365 YGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQ 424 Query: 171 IEHIAGE--TR--WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWY 226 I I E +QTL+FSAT IQ+ A L + + + + I Q Sbjct: 425 IRQIISEFDMPGCRDRQTLMFSATFPKQ-IQNLAADFLYNYIFLKVGVVGTT-QNITQRI 482 Query: 227 YRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 286 + + + LL +L ++FV + L +L + + G++ Q + Sbjct: 483 EYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPE 542 Query: 287 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 346 R A++ LVATD+A+RG+ I +V+ V NFD+P Y+HRIGRT RAG+KG Sbjct: 543 RENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKG 602 Query: 347 TAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRP------KTRAPSEKQTGKPSKKVLA 400 AIS + + ++ + ++ + D ++ PS ++ P K Sbjct: 603 LAISFFNEKNKPVGAELLKLMKAS-NQDIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYN 661 Query: 401 KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGT 435 + + + N RR+ Sbjct: 662 SHHNRDDNRGGYGGGGGGNGGYSNNRNDRREDKSD 696 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 136/411 (33%), Positives = 220/411 (53%), Gaps = 8/411 (1%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F EL + + ++ L+ GF PT IQ +IP AL+G D+LG A TGTGKT A+ +P Sbjct: 1 MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEV 122 ++ ++ + LIL PTRELAMQV++ RE +K + + T+ GG+ + Sbjct: 61 IEKVVGQ-----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKA 115 Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR- 181 IVV T GR++ ++ + + TLILDEAD M++MGF D+ I + Sbjct: 116 LKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ 175 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 +QT+LFSAT+ AIQ+ ++ ++ P + + +I ++Y +LE K + Sbjct: 176 RQTMLFSATMPK-AIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELE-KFDTFTN 233 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + +IVF R + RV EL + L G L G++ Q KR E +K+ ++++ Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATDVAARG+DI VSHV+NFD+P+ ++Y HRIGRT RAG++G A++ V + + Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412 ++ +KA + +A + + + + + + E Sbjct: 354 QIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSE 404 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 136/385 (35%), Positives = 203/385 (52%), Gaps = 9/385 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M FSE ++ + AL D GF T IQA +P LDG DV+G A TGTGKTAA+ + Sbjct: 1 MKGLEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L++L + P+ LI+ PTREL +QVS+ + + K+ + + + GG + N Sbjct: 61 PVLENL-----EAERVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 ++VAT GRL+ +I+ D + T++LDEAD ML+MGF DIE I Sbjct: 116 AQLRRGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPE 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 R+QT+LFSAT+ I A + + +P + KI ++Y++ + E K LL Sbjct: 176 RRQTMLFSATVSKP-ILRIARKYMRNPQVMRVEKKHS--PKIDEFYFKTRE-EDKVELLD 231 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +L ++F + RV L L G + + G++ Q KR ++R G + Sbjct: 232 WILSSNNIRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFS 291 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARGI +PDV V N+D+P + Y+HRIGRT RAG G + +LV + L Sbjct: 292 LLVATDVAARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRL 351 Query: 361 GKVGRYIEEPIKARVIDELRPKTRA 385 ++ + + IK + R Sbjct: 352 RRIQSFTGKRIKQSNMPSPEEIRRG 376 >UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyostelium discoideum RepID=DDX46_DICDI Length = 1151 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 213/430 (49%), Gaps = 10/430 (2%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 + ++++ L E + L+ + +PT+IQA IP ++GRD++G A TG+GKT A+LLP Sbjct: 507 PIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLP 566 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 +H+L P+ G LI++PTRELA+Q+ ++ +K L A + GG + Sbjct: 567 MFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQI 626 Query: 121 EVFSENQDIVVATTGRLLQYI---KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 DIVV T GR++ + + R V L+LDEADRM DMGF I I Sbjct: 627 AELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDS 686 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QT++FSAT +++ A+++L P+E+ A + I Q + E + Sbjct: 687 IRPDRQTIMFSATFP-PKVENVAKKILNKPLEIIAGGRSIVSSDIEQ-FVEVRPTETRFR 744 Query: 238 LLVHLLK-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 L+ LL + ++F ++E L L + L G Q R+E I Sbjct: 745 RLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKN 804 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 +L+AT +A+RG+DI D++ V NFD P + Y+HR+GRT RAG +GTA + + + Sbjct: 805 KVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDE 864 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKP---SKKVLAKRAEKKKAKEKEK 413 + + +E+ + + +++ GK + R K A E++K Sbjct: 865 ERFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEEDK 924 Query: 414 PRVKKRHRDT 423 ++++ + Sbjct: 925 KNIERKQQRK 934 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 142/446 (31%), Positives = 234/446 (52%), Gaps = 12/446 (2%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M+ T F + + L + LQ G T PT +Q AIP L G+DV+ A TGTGKT A+ L Sbjct: 1 MS-TEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTL 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P LQ + + + LILTPTRELA+Q++ ++LA + GG Sbjct: 60 PILQRIDIDKEQ----VQALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQI 115 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + + IVVAT GRL+ +++ E + ++ L+LDEAD+ML MGF ++++I +T Sbjct: 116 RKLNNSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPR 175 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QT+LFSAT+ D I+ AE ++ PV++ + I Q D + L+ Sbjct: 176 ARQTMLFSATMP-DQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTD-RGRQKALI 233 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 +++ +++F R + R +L L++ G + L G++ Q KR + +KR + ++ Sbjct: 234 SMIETQRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQ 293 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +LVATDVAARG+D+ V+HVFNFD+P + Y+HRIGRT RAG++GTAI++ +D + Sbjct: 294 ILVATDVAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAV 353 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK-----RAEKKKAKEKEKPR 415 + R I ++ R I+ + + + + + + +K + R Sbjct: 354 AHIERSINAILERRTIEADGTIVKNTAPRSSSEGKSYDKKPDRGGRGRGGRDSKPAQGGR 413 Query: 416 VKKRHRDTKNIGKRRKPSGTGVPPQT 441 + R+ + G R +G P+ Sbjct: 414 GGRGERNERGAGAGRSQAGGRGKPER 439 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 152/445 (34%), Positives = 240/445 (53%), Gaps = 12/445 (2%) Query: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 F EL+L++++L+AL D F T +Q IP L G+D+L A TGTGKTAAYLLP L Sbjct: 3 FDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSK 62 Query: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVA---YMNHAE 121 L D + LI++PTRELA Q+ + + + + + GG Y + Sbjct: 63 LADGGYPE-DAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIK 121 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + D+++AT GR + +I N D V +LDEADRMLDMGF++DI+ IA + Sbjct: 122 SLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPST 181 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 QT++FSAT+ I+D A+ LL++P V ++ +KI Q Y + K ++ Sbjct: 182 CQTIMFSATMPSK-IEDLAKTLLKEPEMVKL-AVSKPAEKIQQSAYVCYET-QKIEIIKD 238 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 + K + R I+F +++V ++A+ L IN + ++ Q +R++ + + G+++V Sbjct: 239 IFKAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDV 298 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 LVATD+ ARGIDI D++ V N+D+P + Y+HRIGRTARA R G AI+ V D Sbjct: 299 LVATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYYFQ 358 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 ++ ++E+ I+ + P K G+PSK AK + ++ K +R Sbjct: 359 QIESFLEKTIEKNRLP--EALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNYR 416 Query: 422 DTKNIGKRRKPSGTGV--PPQTTEE 444 KN ++ P+ PQT+E+ Sbjct: 417 RVKNRQEQPAPTDEKEQHKPQTSEK 441 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 150/374 (40%), Positives = 211/374 (56%), Gaps = 7/374 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF +L L + +L +++D GFT P+ IQAAAIP L GRD++G A TGTGKTAA+ LPAL Sbjct: 15 TFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALN 74 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 ++ IL++TPTRELA QVSD + ++ T+ GG +Y ++ Sbjct: 75 NINPN-----DGVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQ 129 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +VVAT GRLL +K+ A ++LDEAD MLDMGF DI I +QT Sbjct: 130 RGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQT 189 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ I+ AER+L++P +S I+Q YY ++ E + ++ L+ Sbjct: 190 LLFSATMPKP-IKLLAERILDNPEFISITKGETTNTDINQEYYVIEESE-RDDAIIRLMD 247 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +SIVF R + V L+N L AG L G+M Q +R IK V VLVA Sbjct: 248 AEACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVA 307 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVAARGI + ++SHVFN+ +P ++Y+HRIGRT RAG KG AI+L+ + L ++ Sbjct: 308 TDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIK 367 Query: 365 RYIEEPIKARVIDE 378 + + + Sbjct: 368 TKVGTTMTHAFVPS 381 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 214/414 (51%), Gaps = 8/414 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M + F +L + E +ALQ+ F T IQA IP + G DV+G A TGTGKT A+ + Sbjct: 1 MNIL-FEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGI 59 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNH 119 P ++ + K + LIL PTREL +QV + ++L ++ + IA + GG +Y Sbjct: 60 PIIEKIDY----KLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQ 115 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 +++AT GR++ +I+ D A++ L LDEAD ML MGF + +E I + Sbjct: 116 FRALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIP 175 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +QT+LFSATL +I+ A + ++ + I Q+Y+ + + K LL Sbjct: 176 EERQTVLFSATLP-PSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFD-KNKLL 233 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 V LL +I+F ++ V E+ ++L++ G + G++ Q +R + +G++ Sbjct: 234 VRLLDLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKI 293 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 +L+ATDVAARGIDI D+ V N+D+P + Y+HRIGRT RAG+KG A S + Sbjct: 294 KILIATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQ 353 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 L K+ Y++E +K I + + E K + E EK Sbjct: 354 LKKLEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEK 407 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 156/420 (37%), Positives = 225/420 (53%), Gaps = 11/420 (2%) Query: 22 KGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHL--LDFPRKKSGPPRI 79 + P+ IQ AIP + GRD+ G A TGTGKTAA+ LP LQ L D K + Sbjct: 1 MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60 Query: 80 LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQ 139 LIL PTRELA+Q+++ + +L A I GGV + + D+++AT GRL+ Sbjct: 61 LILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLID 120 Query: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDF 199 + D + VE L+LDEADRMLDMGF +DI I R QT+LFSATL + I+ Sbjct: 121 LYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDE-IKHL 179 Query: 200 AERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRE 259 LL DP+++ + +KI+Q Y D + +K LL+ LL+ P+ +IVFVR + Sbjct: 180 VSDLLNDPLKIMISSGNVTVEKINQSLYFVDKV-NKAKLLIKLLENPQIYNAIVFVRTKR 238 Query: 260 RVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSH 319 V L L +A I + G+ Q R A+ +V VLVA+D+AARGIDI +++H Sbjct: 239 NVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTH 298 Query: 320 VFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDEL 379 V NFD+P + Y+HRIGRTARAG G AI+ + LL + ++I + I Sbjct: 299 VINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNPYY 358 Query: 380 RPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV-------KKRHRDTKNIGKRRKP 432 K + EK+ K K +K K ++ + ++ KK + ++ KRR+P Sbjct: 359 PMKDLSIPEKKHKSKKKGETQKSRDKAKHLKQGQKKLSVRTNNIKKNSKTKRSNFKRRRP 418 >UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=3 Tax=Magnoliophyta RepID=B9SW84_RICCO Length = 1173 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 128/444 (28%), Positives = 206/444 (46%), Gaps = 6/444 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V T+ + L +LE ++ + +P IQA A+P + GRD +G A TG+GKT A++LP Sbjct: 525 PVKTWHQTGLASKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLP 584 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 L+H+ D P ++G P LI+ PTREL Q+ ++ AK + + GG Sbjct: 585 MLRHIKDQPLVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQI 644 Query: 121 EVFSENQDIVVATTGRLLQYI---KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +IVV T GR++ + + + R V L++DEADRM DMGF I I Sbjct: 645 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 704 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +QT+LFSAT ++ A ++L PVE+ + K I Q + E Sbjct: 705 IRPDRQTVLFSATFPRQ-VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESERFLR 763 Query: 238 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297 LL L + E + ++FV+ +++ L L + G L G Q R I Sbjct: 764 LLELLGEWNEKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 823 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 N+L+AT +AARG+D+ ++ V NFD+P + Y+HR+GRT RAGRKG AI+ + D Sbjct: 824 VCNLLIATSIAARGLDVKELDLVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 883 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVK 417 + + +E + V ++L+ K + +E+ + Sbjct: 884 RYAPDLVKALELS-EQVVPEDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKR 942 Query: 418 KRHRDTKNIGKRRKPSGTGVPPQT 441 + + + + + Sbjct: 943 IAAKKAQAKEYGFEEDKSDSEDED 966 >UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0K2_SCHJY Length = 1056 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 130/443 (29%), Positives = 208/443 (46%), Gaps = 21/443 (4%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 VT++S+ L L ++ GF P+AIQA AIP GRDV+G A TG+GKT A+LLP Sbjct: 457 PVTSWSQCGLSVQTLSVIRSLGFEEPSAIQAQAIPAITAGRDVIGVAKTGSGKTIAFLLP 516 Query: 62 ALQHLLDF-PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 +H++D P + P +I+TPTRELA+Q+ + AK L GG + Sbjct: 517 MFRHIMDQRPLRNGEGPVAVIMTPTRELAVQIFRECKPFAKALDLRATCAYGGAPIKDQI 576 Query: 121 EVFSENQDIVVATTGRLLQYIKEEN---FDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 +IVV T GR++ + + + ++LDEADRM D+GF + I Sbjct: 577 AELKRGAEIVVCTPGRMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNN 636 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 R +Q +LFSAT A++ A ++L+ P+E++ + ++ Q E K Sbjct: 637 IRPDRQVVLFSATFPR-AMEALARKVLKKPIEITVGGRSVVAAEVEQLV-EVRSEESKFP 694 Query: 238 LLVHLL----KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 293 L+ LL R++VFV + E L + L + G + + G Q R+ I Sbjct: 695 RLLELLGELYNTQPDVRTLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISD 754 Query: 294 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353 G +VL+AT VAARG+D+ + V N+D P + Y+HR+GRT RAG G A++ V Sbjct: 755 YKMGIFDVLIATSVAARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFVT 814 Query: 354 AHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEK 413 + + ++ + ++ ++GK +K A Sbjct: 815 PDQSRYAVGIAKALKMSKQPVPLELQNLANEFLKNVKSGK-----------EKAAGSGFG 863 Query: 414 PRVKKRHRDTKNIGKRRKPSGTG 436 + R +T+N ++ + G Sbjct: 864 GKGLSRLDETRNAERKMQRRAFG 886 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 148/375 (39%), Positives = 223/375 (59%), Gaps = 7/375 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 +F++L L ES+L+++ + GFT P+ IQ AIP L GRDV+ A TGTGKTAA+ LP + Sbjct: 23 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 82 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124 +L K + L++TPTRELAMQ+SD +L KHT + GG + E Sbjct: 83 NL-----KNNHTIEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIK 137 Query: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 +N +++AT GRLL ++K + + ++LDE+D MLDMGF DIE I Q Sbjct: 138 KNPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQI 197 Query: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 LLFSAT+ + I+ A+++LE+P+++ PS I Q +Y ++ E ++ ++HLL Sbjct: 198 LLFSATMP-EPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHE-RSEAIMHLLD 255 Query: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304 +SIVF R ++ EL +L + L G+M Q R +I + +VLVA Sbjct: 256 TQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 315 Query: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364 TDVA+RG+DI VSHVFN+ +P + ++Y+HRIGRT RAG+KG AI+LV ++ L ++ Sbjct: 316 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 375 Query: 365 RYIEEPIKARVIDEL 379 + I+ I+ I + Sbjct: 376 KEIDSEIELFEIPTI 390 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 144/435 (33%), Positives = 231/435 (53%), Gaps = 9/435 (2%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 +F +L + + LL A++D G+ +PT IQ AIP L DV +A TGTGKTAA+ L L Sbjct: 1 MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 Q L K R L++ PTREL++Q+ + + AK+ ++IA + GG + ++ Sbjct: 61 QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKIL 120 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 E DIV+AT GR+L+++ + VE +LDEADRMLDMGF ++I I R Q Sbjct: 121 KEGVDIVIATPGRVLEHVDKG-LSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQ 179 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TLLFSAT D ++ ++ +L P + + I+Q Y D E K LL +++ Sbjct: 180 TLLFSATF-SDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVD-TEKKAPLLAYII 237 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + +VF R + L L++ G+ + G+ Q R + + EG++ VLV Sbjct: 238 GSRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLV 297 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+A+RG+DI ++ V N+++P + Y+HR+GRT RAGR G AISL++ ++ + + Sbjct: 298 ATDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDI 357 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDT 423 + I I +I P + + + L ++E KK + K + + +K+ + Sbjct: 358 EKLIGMKIPQEIIAGFEP------DPTIRRLDQDELKLKSEHKKVEVKHERKPRKKEDGS 411 Query: 424 KNIGKRRKPSGTGVP 438 K +KP T Sbjct: 412 KKSANYKKPVTTKKR 426 >UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoeba RepID=C4LZM8_ENTHI Length = 578 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 140/412 (33%), Positives = 211/412 (51%), Gaps = 16/412 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T+ TF +++L E L + GF P +Q A IP LD RD++ A TG+GKTAA+L P Sbjct: 129 TIETFYDIDLGEELDHNIFKAGFYHPMPVQKATIPIVLDKRDLMSCAQTGSGKTAAFLFP 188 Query: 62 ALQHLLDFPRKKSGP---------PRILILTPTRELAMQVSDHARELAKHTHLDIATITG 112 + +L P P LIL PTREL Q+ + A + T + + G Sbjct: 189 IISDILKNPPMPRQSNFSHRVTVFPVALILAPTRELGQQIYEEAVRFTEDTPIRSVCVYG 248 Query: 113 GVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 172 G + + DI+VAT GRLL + +++ +V LI DEADRMLDMGF I Sbjct: 249 GSDSYTQIQEMGKGCDILVATPGRLLYFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIR 308 Query: 173 HIAG--ETRW--RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYR 228 I E ++QTL+FSAT IQ A L+D V ++ + + I Q Sbjct: 309 EICEDNEMPPVGKRQTLMFSATFPKQ-IQRLAADFLDDYVFITVGRAGSTVESIQQIILW 367 Query: 229 ADDLEHKTALLVHLLK-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 287 ++ + A+L L + + ++++FV + L N+L + G + G+ Q R Sbjct: 368 VEEEIKQEAILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGDRSQADR 427 Query: 288 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 347 + ++KR E + +LVATDVA+RG+DIPD+ V N+DMP ++Y+HR+GRT RAG+KGT Sbjct: 428 DFSLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNEIESYVHRVGRTGRAGKKGT 487 Query: 348 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL 399 AI+ + L+ + +EE K + D L K + + K +K Sbjct: 488 AITFINEKTQNLIPPLVSLLEEA-KQTIPDWLEEKAQEYRKPFGSKRGRKGG 538 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 132/409 (32%), Positives = 202/409 (49%), Gaps = 7/409 (1%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M F+EL L +L A+ GF IQAA IP L GRDV+G + TG+GKT A+ + Sbjct: 1 MEKRPFAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAI 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNH 119 PAL+ + K ++L+L PTRELA+QV++ LA+ + I GG +Y Sbjct: 61 PALERV----DPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQ 116 Query: 120 AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179 + +V+ T GR++ +++ A++ ++LDEADRMLDMGF +DIE I Sbjct: 117 YRALAAGSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVP 176 Query: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239 +Q L FSAT+ IQ+ +R DP + + ++ Q Y+ D K L Sbjct: 177 VPRQLLFFSATMPRP-IQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDR-RSKLEAL 234 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L+ + IVF + V +L L G L G++ Q +R+ + + Sbjct: 235 TRLIDVHDFRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGF 294 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 L+ATDVAARG+D+ D+ VFN+D+P + Y HRIGRT RAG+ G A + V + Sbjct: 295 EFLIATDVAARGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYK 354 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 L + R+ + ++ + L A + K + AK + Sbjct: 355 LQAMVRWAKLDLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDR 403 >UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9ETM9_ORYSJ Length = 468 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 128/405 (31%), Positives = 194/405 (47%), Gaps = 29/405 (7%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V F ++ E +L+ + GF PT IQ+ P AL GRD++G A TG+GKT AYLLP Sbjct: 89 PVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLP 148 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 A+ H+ P G P +L+L PTRELA+Q+ A + Sbjct: 149 AIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKF--------------------- 187 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 +IV+AT GRL+ I+ + + R V L+LDEADRMLDMGF I+ I + R Sbjct: 188 -----GVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRP 242 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPST-RERKKIHQWYYRADDLEHKTALL 239 +QTL +SAT + ++ A L DP +V + I Q + + L+ Sbjct: 243 DRQTLYWSATWPKE-VEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLV 301 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L + +R ++F+ ++ ++ LR G + G+ Q +R+ + G+ Sbjct: 302 NLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKS 361 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 ++ ATDVAARG+D+ DV +V N+D P S + Y+HRIGRT RAG KGTA + A + Sbjct: 362 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 421 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 + +EE + + AP + + Sbjct: 422 AKDLINILEEAGQKVSPELANMGRGAPPPSSGHRDRYRGYGGGRS 466 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 7/397 (1%) Query: 7 SELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHL 66 +EL L LL+A+ GF + IQAA IP L G DV+G + TG+GKTAA+ LPA++ + Sbjct: 1 AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERV 60 Query: 67 LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFSE 125 K ++LIL PTRELA+QV++ +LA + I GG +Y + Sbjct: 61 DT----KLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAA 116 Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 +V+ T GR++ +++ + +ILDE DRMLDMGF DIEHI ++Q+L Sbjct: 117 GAQVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSL 176 Query: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQ 245 FSAT+ + I+D R + +P V + ++ Q Y+ D K +L L+ Sbjct: 177 FFSATMPRE-IRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDR-RSKLEVLTRLIDL 234 Query: 246 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 305 + I+F + V EL L G L G++ Q +R +++ L+AT Sbjct: 235 NDFRYGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIAT 294 Query: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365 DVAARG+D+ D+ VFNFD+P + Y HRIGRT RAGRKG A + V + L + R Sbjct: 295 DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVR 354 Query: 366 YIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKR 402 + I+ + L A K + AK+ Sbjct: 355 FARLDIRRERVPSLDQVEEARENVFFEKLRATLDAKK 391 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 141/403 (34%), Positives = 219/403 (54%), Gaps = 5/403 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 T FS+L L++ +++ + G+ PT IQ AIP L GRDVLG A TGTGKTAA+ LP Sbjct: 5 TKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP 64 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHA 120 + ++ R P++L+L PTRELA+QV++ + AK+ +LD+A I GG Y + Sbjct: 65 LINNMDLESR--DRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +VV TTGR++ +I++ + L+LDEAD ML MGF D+ ++ Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD 182 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 Q LLFSAT+ D I D + L +P ++ T+ + Q + K L Sbjct: 183 ECQRLLFSATIPTD-IADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGF-RKIDALD 240 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 LL+ E I+FV+ + E+A+ L+ G + G+M Q +R + + + + Sbjct: 241 RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSD 300 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 VLVATDV ARGID+ +SHV N+DMP DTY+HRIGRT RAGR+G +ISLV + L Sbjct: 301 VLVATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFL 360 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRA 403 + R+ P++ + + ++ + + + + ++ Sbjct: 361 RTLERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKS 403 >UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QS74_9SPHI Length = 475 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 155/456 (33%), Positives = 225/456 (49%), Gaps = 16/456 (3%) Query: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 M +T+F + EL+ LL A+ + G+T PT IQ IP +L DVLG A TGTGKTAAYLL Sbjct: 1 MEITSFEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLL 60 Query: 61 PALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 P L + + PR LIL PTREL MQ++ EL K+T L + GG+ Sbjct: 61 PILMKV---KYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQI 117 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 E DI+VAT GR + + + + T++LDEAD+M+DMGF I I Sbjct: 118 ETLRNGVDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPT 177 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 ++Q LLFSAT G ++ + LE P++V P + Q Y A + K +L Sbjct: 178 KRQNLLFSATF-GGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLD 236 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGI---NNCYLEGEMVQGKRNEAIKRLTEG 297 +L++Q + R I+F R + + +L I + Q R A+ EG Sbjct: 237 YLMRQEDFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEG 296 Query: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 357 + VLV+TDVAARGID+ +VSHV NFD+P + Y+HRIGRT RA R G AI+ + + Sbjct: 297 NIQVLVSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEE 356 Query: 358 LLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE---------KKKA 408 + K+ R I+ I + + P E++ + +R E +KK Sbjct: 357 YHVQKIERIIKATIPRQPLPAGVVVAETPFEEEQAMLREIDEQRRKEDPTFLGAFHEKKI 416 Query: 409 KEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE 444 R + + + + K+ PSG G + Sbjct: 417 TNMAPGRERDKAQAKLSGAKKPSPSGPGTRSGSFSR 452 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 142/405 (35%), Positives = 216/405 (53%), Gaps = 7/405 (1%) Query: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64 TF++L L LL+ L G+ PT IQ+ AI LDG DVLG A TGTGKTAA+ LP L Sbjct: 6 TFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLS 65 Query: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF 123 + K P+ L+L PTRELA+QV++ + A+ + + I GG N Sbjct: 66 RIDTTKNK----PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRAL 121 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 +N ++V T GR++ +++ D ++ L+LDEAD ML MGF +DI+ I T KQ Sbjct: 122 KQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQ 181 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 T LFSAT+ I+ ++ +DPV++ S E ++I Q +RA L+ K L +L Sbjct: 182 TALFSATMPHQ-IKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLD-KLDGLTRIL 239 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + I+FVR R L+ L G L GE+ Q +R + + + +G++++++ Sbjct: 240 EIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIII 299 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATDVAARGIDI ++HV N+D+P TY HRIGRT RAGR G AI + + ++ + Sbjct: 300 ATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDI 359 Query: 364 GRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 R + + + + + + A + + KA Sbjct: 360 ERATKSELIDYPMPSAEKLGEHRAAAFKSTVVEHIEADKLDYFKA 404 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 136/402 (33%), Positives = 217/402 (53%), Gaps = 10/402 (2%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRD-VLGSAPTGTGKTAAYLLP 61 +T F ++ L +++L A+ KG+ PT IQ IP L G++ V+G A TGTGKTAA+ +P Sbjct: 1 MTKFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIP 60 Query: 62 ALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 ++ L +K+ + L+LTPTRELA+QV + L + L++ + GGV+ N Sbjct: 61 LIERL----DEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIR 116 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 D+VV T GR++ ++ D ++ L++DEAD MLDMGF +D+E I +T Sbjct: 117 ALKRRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKE 176 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSA---NPSTRERKKIHQWYYRADDLEHKTAL 238 KQ L+FSAT+ I A + + + V+ N KK Q YY + +K L Sbjct: 177 KQILMFSATMPQ-RIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISES-NKIEL 234 Query: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298 L L+ +VF + + + E+AN L + G L G++ Q +R + R R Sbjct: 235 LSRLIDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKR 294 Query: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 358 + +L++TDVAARGIDI ++ +V N+ +P++ + Y+HRIGRTARAG +GTAI+ V ++ Sbjct: 295 IKILISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYR 354 Query: 359 LLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA 400 + + I+ I + + A EK + + Sbjct: 355 RFMFIKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAK 396 >UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 Tax=Euteleostomi RepID=DDX43_HUMAN Length = 648 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 129/408 (31%), Positives = 208/408 (50%), Gaps = 7/408 (1%) Query: 5 TFSE-LELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 TF + + ++E ++ GF +PT IQ+ A P L G D++G A TGTGKT YL+P Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301 Query: 64 QHLLDFPRKK--SGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121 HL+ P K P +L+LTPTRELA+QV + + + L + GG E Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIE 360 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 + DI++AT GRL + + + L+LDEAD+MLDMGF I I + R Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTALLV 240 +QT++ SAT ++ A+ L++P+ V + Q + E + + Sbjct: 421 RQTVMTSATWPH-SVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQT 479 Query: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300 L + IVFV ++ L++ L I+ L G+ Q R +A++ G+V Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539 Query: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360 +L+ATD+A+RG+D+ DV+HV+NFD PR+ + Y+HRIGRT RAGR G +I+ + +D + Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599 Query: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKA 408 ++ +E + +EL Q + ++ + + + K Sbjct: 600 SELINILERA-NQSIPEELVSMAERFKAHQQKREMERKMERPQGRPKK 646 >UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Tax=Eukaryota RepID=DDX42_DICDI Length = 986 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 134/421 (31%), Positives = 207/421 (49%), Gaps = 3/421 (0%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 VT+F D+ LL+A+ + PT IQ AIP AL GRD++ A TG+GKTA ++ P Sbjct: 303 PVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWP 362 Query: 62 ALQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 ++ H++D P +K P L L PTRELA Q+ + +K+ L + GGV+ Sbjct: 363 SISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQC 422 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +I+VAT GRL+ IK + V L+LDEAD+M D GF + I R Sbjct: 423 KELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRP 482 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240 +QTLLFSAT +++FA +L DP+++S I Q K L Sbjct: 483 DRQTLLFSATF-KPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLT 541 Query: 241 -HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L ++FV + V +L++ L + G C L G+ Q +R++ I+ EG++ Sbjct: 542 NQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKI 601 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359 N+L+ATDVAARG+DIP + +V N+D R +++ HRIGRT RAG G A +L+ D Sbjct: 602 NILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHF 661 Query: 360 LGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKR 419 + + +E + + + P K+ + + + + Sbjct: 662 SVDLIKNLESASQFVPPELIDVAMNNPHFKRERGGGGGGSNRGRGRGGGGVGYRRNSRGG 721 Query: 420 H 420 Sbjct: 722 G 722 >UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=Embryophyta RepID=RH24_ARATH Length = 760 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 132/385 (34%), Positives = 199/385 (51%), Gaps = 5/385 (1%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 V TF + ++ A++ + + +PTAIQ A+P L GRDV+G A TG+GKTAA++LP Sbjct: 226 PVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLP 285 Query: 62 ALQHLLDFPR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + H++D P ++ P +I PTRELA Q+ A++ +K L ++ + GG++ Sbjct: 286 MIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 345 Query: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180 + +IVVAT GRL+ +K + L+LDEADRM D+GF + I G+ R Sbjct: 346 KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405 Query: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA-LL 239 +QTLLFSAT+ ++ A +L DP+ V+ + I Q K LL Sbjct: 406 DRQTLLFSATMP-WKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLL 464 Query: 240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299 L + +VF K+ V E+ L L G+ Q R E +++ G Sbjct: 465 EKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVH 524 Query: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHL 358 +VL+ATDVAARG+DI + V N+D+ + D ++HRIGRT RAG R G A +LV + Sbjct: 525 HVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREAR 584 Query: 359 LLGKVGRYIEEPIKARVIDELRPKT 383 G++ + V EL Sbjct: 585 FAGELVNSL-VAAGQNVPPELTDLA 608 >UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary for prespliceosome formation n=1 Tax=Pichia pastoris GS115 RepID=C4R557_PICPG Length = 784 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 133/452 (29%), Positives = 217/452 (48%), Gaps = 16/452 (3%) Query: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLP 61 +T + +L L + + ++D + PT IQ+ A+P + G+D++G A TG+GKT A+LLP Sbjct: 213 PITEWCQLALPQQFMSVIEDLKYEAPTPIQSEALPNLMSGKDLIGIAKTGSGKTLAFLLP 272 Query: 62 ALQHLLDFPRKKSG-PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120 + ++ P +SG P +ILTPTRELA+Q+ + K +L + GG + Sbjct: 273 MFRQIISQPDPESGEGPIGVILTPTRELALQIFKECKPFMKSLNLKGICVYGGASISQQI 332 Query: 121 EVFSENQDIVVATTGRLLQYI---KEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177 + V T GRL+ + + L+LDEADRM DMGF + I Sbjct: 333 SDIKKRVHFAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPN 392 Query: 178 TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTA 237 TR +QTL+FSAT ++ A+++L +P+EV + I Q + D E + Sbjct: 393 TRPDRQTLVFSATFP-PKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSK 451 Query: 238 LLVHLL---KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294 LL L + + +VFV +++ L L + G N L G Q R+ I+ Sbjct: 452 LLELLGTFKSKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDF 511 Query: 295 TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 354 G ++LVAT VAARG+D+ ++ V N+D P + Y+HR+GRT RAG G A++ + A Sbjct: 512 KTGNSDILVATSVAARGLDVKRLNLVINYDSPNHMEDYVHRVGRTGRAGSTGEAVTFLTA 571 Query: 355 HDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKP 414 D+ V R ++ K V D ++ E+ +K+ + + ++E+ Sbjct: 572 KDYRAAYDVSRALKVS-KQLVPDNVQAVANVFIEQLKTGSAKRGSGYGGKGLEKLQEERE 630 Query: 415 RVKKRHRD-------TKNIGKRRKPSGTGVPP 439 ++ + T + K T PP Sbjct: 631 LKRQLEKTTYGDEVATADPKKENTHGATATPP 662 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 206/414 (49%), Gaps = 6/414 (1%) Query: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63 F L+L +L + G+T PT IQ AIP L G D++GSA TGTGKTAA+ LP L Sbjct: 1 MPFKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPIL 60 Query: 64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123 L + PR+L+L PTRELA QV R+ A+ T L + GGV Y Sbjct: 61 TRLGAHA---ARAPRVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTEL 117 Query: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183 D++VAT GRL+ Y+ + + + VE L+LDE DRMLDMGF ++ I ++Q Sbjct: 118 KRGVDVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQ 177 Query: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLL 243 TL FSAT+ + IQ A L +P V + + + Y + K LL LL Sbjct: 178 TLFFSATVPPE-IQAVASFALRNPTRVEVGVNRSVNESVKHALYPVA-ADQKFELLEALL 235 Query: 244 KQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 + + +VF R + ++A L+ A + L Q +R EA+ G+ ++V Sbjct: 236 ARTDFDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMV 295 Query: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 ATD+AARGID+ VSHV N+D+P + Y+HRIGRT RA G A +LV + + + Sbjct: 296 ATDIAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDI 355 Query: 364 GRYIEEPIKARVIDELRPKT-RAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRV 416 R+I + I + + A + L + K + + + R Sbjct: 356 ERFIGQKIPELRLAGFSYRPFVARPPQVQPPRPPGSLPGQIRHKGSFNRYRGRR 409 >UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Nasonia vitripennis RepID=UPI00015B57D6 Length = 715 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 138/408 (33%), Positives = 217/408 (53%), Gaps = 9/408 (2%) Query: 2 TVTTFSE-LELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60 V TF + +L ++ + F +P+ IQ A P L G+D++G A TGTGKT A+LL Sbjct: 271 PVQTFEQAFRNYPDILVEIRKQNFEKPSPIQCQAWPILLSGKDMIGIAQTGTGKTLAFLL 330 Query: 61 PALQHLLDF--PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118 PAL H+ + PR + P +L++ PTRELA+Q+ + + + + GG Sbjct: 331 PALIHIDNQDTPRSERSGPTVLVMAPTRELALQIEKEVNKY-YYHGIKAVCVYGGGDRKK 389 Query: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178 + S+ +IV+AT GRL I+ E D + V L+LDEADRMLDMGF I + Sbjct: 390 QMNIVSKGVEIVIATPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDI 449 Query: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANP-STRERKKIHQWYYRADDLEHKTA 237 R +QT++ SAT ++ AE ++ P+ V + + Q + D+ E KT Sbjct: 450 RPDRQTVMTSATWP-PGVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEE-KTD 507 Query: 238 LLVHLLKQPEA-TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296 +L + IVF K+ +V ++ + L +G+ + G Q R +A++ + Sbjct: 508 VLKDFFHNMAPSDKVIVFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKT 567 Query: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356 G VN+L+ATDVA+RGIDI D++HVFN+D PR + Y+HR+GRT RAG+ G +ISLV D Sbjct: 568 GDVNILLATDVASRGIDIEDITHVFNYDFPRDIEEYVHRVGRTGRAGKTGESISLVTRRD 627 Query: 357 HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAE 404 L ++ + +EE + + EL + + + ++ R E Sbjct: 628 WGLTKELIKILEEA-EQEIPTELYSMSERYEAMKKKRDEERGDGDRRE 674 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 146/448 (32%), Positives = 226/448 (50%), Gaps = 26/448 (5%) Query: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62 + F L+++ESL +L FT+PT IQ AIP AL+G+D+LG+A TGTGKT A+ +P Sbjct: 1 MENFKLLKIEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPL 60 Query: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHAREL-AKHTHLDIATITGGVAYMNHAE 121 + L+ L++ PTRELA QV + + + + ++ A + GG + Sbjct: 61 INKLILDKNAF-----ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLR 115 Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWR 181 I+V T GR+ ++K ++ + A + L+LDE DRMLDMGF IE + Sbjct: 116 QLGNRSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKD 175 Query: 182 KQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH 241 QTLLFSATL + I +ER L P +S ++ KI Q + L+ Sbjct: 176 HQTLLFSATLPQN-ILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELIDQ 234 Query: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301 L + +VFV+ + ++ L+E G + + G++ Q KR+ I +G + Sbjct: 235 FLARK--GSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRI 292 Query: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361 L+ATDVAARG+DIP + HV N+D+P+ + Y+HRIGRTARAG +G+A++ + D + Sbjct: 293 LIATDVAARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWN 352 Query: 362 KVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHR 421 + + I P +A K K KK K +E+ R + R Sbjct: 353 SINKLI------------DPNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGR 400 Query: 422 DTKNIGKRRKP-----SGTGVPPQTTEE 444 ++ R KP S +G PP+ E+ Sbjct: 401 QDRSSSFRNKPKSYDKSRSGKPPRDGEK 428 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.198 0.735 Lambda K H 0.267 0.0605 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,876,012,579 Number of Sequences: 3077464 Number of extensions: 265345947 Number of successful extensions: 873170 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 8759 Number of HSP's successfully gapped in prelim test: 4107 Number of HSP's that attempted gapping in prelim test: 821228 Number of HSP's gapped (non-prelim): 26632 length of query: 444 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 312 effective length of database: 634,171,108 effective search space: 197861385696 effective search space used: 197861385696 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 96 (41.0 bits)