142 c1pjrA_ Probab=98.42   E-value=3.8e-06  Score=55.28  Aligned_columns=82  Identities=20%

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             97788999999999669989999289984789999999999985021035782799981828999999999999730138
Q batch____        25 TRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTH  104 (444)
Q Consensus        25 ~~~~~iQ~~ai~~il~g~~vii~apTGsGKTl~~~lpil~~i~~~~~~~~~~~~~lii~Pt~~L~~Q~~~~~~~~~~~~~  104 (444)
                      ..+++-|.+|+.+  ....++|.+|.|||||.+.+--+...+........   ++|+++||...+.++.+++.+.+....
T Consensus        10 ~~L~~~Q~~ai~~--~~~~~lV~GppGTGKT~~l~~~i~~ll~~~~~~~~---~ILv~s~tn~A~d~~~~ri~~~~~~~~   84 (623)
T c1pjrA_          10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPW---NILAITFTNKAAREMRERVQSLLGGAA   84 (623)
T ss_dssp             TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGG---GEEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred             HCCCHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHH---HEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             2038898999958--89978999488986779999999999980899977---878974698999999999999610110


Q ss_pred             CCEEEEE
Q ss_conf             8419998
Q batch____       105 LDIATIT  111 (444)
Q Consensus       105 ~~~~~~~  111 (444)
                      .....-+
T Consensus        85 ~~~~i~T   91 (623)
T c1pjrA_          85 EDVWIST   91 (623)
T ss_dssp             TTSEEEE
T ss_pred             CCCEEEE
T ss_conf             2768975