BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (85 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_B4TLR5 Putative uncharacterized protein n=1 Tax=Salmone...   129   3e-29
UniRef50_Q7BTW9 Replication protein n=17 Tax=root RepID=Q7BTW9_Y...    86   3e-16
UniRef50_P03847 Replication regulatory protein repA2 n=63 Tax=ro...    86   4e-16
UniRef50_P62536 Replication regulatory protein repA2 n=17 Tax=ro...    83   3e-15
UniRef50_O07483 RepB protein n=2 Tax=Enterobacteriaceae RepID=O0...    72   5e-12
UniRef50_Q7BQV5 CopB/RepC n=1 Tax=Serratia entomophila RepID=Q7B...    70   2e-11
UniRef50_Q9ZEW7 CopB (Fragment) n=1 Tax=Klebsiella pneumoniae Re...    57   3e-07
UniRef50_B2VB58 Putative plasmid copy control protein n=1 Tax=Er...    47   1e-04
UniRef50_Q65AF6 CopB protein n=1 Tax=Yersinia pestis RepID=Q65AF...    40   0.034

>UniRef50_B4TLR5 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188
          RepID=B4TLR5_SALET
          Length = 89

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 73/85 (85%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MS+TE+ VTSSS  KR YRKGNP+P +ERQ+AS+ARRS+THKAFHAVIQA LK++L E A
Sbjct: 5  MSKTEDTVTSSSKRKRGYRKGNPMPPKERQKASIARRSSTHKAFHAVIQANLKNKLREFA 64

Query: 61 DEEGITQAQMLEKLIESELKRRATL 85
          DEEGITQA+MLEKLIE E+ RR  L
Sbjct: 65 DEEGITQAKMLEKLIEEEIFRRNPL 89


>UniRef50_Q7BTW9 Replication protein n=17 Tax=root RepID=Q7BTW9_YERPE
          Length = 84

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 2/78 (2%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQ ENAVTSSS  KRAYRKGNP+   E+QR S++R+  THKA +  IQ  LK+ L +L 
Sbjct: 1  MSQIENAVTSSS--KRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLC 58

Query: 61 DEEGITQAQMLEKLIESE 78
          ++ G+TQ +M+E+ I+ E
Sbjct: 59 EDSGLTQTEMIERWIQRE 76


>UniRef50_P03847 Replication regulatory protein repA2 n=63 Tax=root
          RepID=COPB2_ECOLX
          Length = 84

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQTENAVTSSSG KRAYRKGNP+   E+QR S+AR+  + K     ++ + K  L ++ 
Sbjct: 1  MSQTENAVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEVKVFLEPKYKAMLMQMC 60

Query: 61 DEEGITQAQMLEKLIESELKRRA 83
           E+G+TQA++L  LI+SE ++R 
Sbjct: 61 HEDGLTQAEVLTALIKSEAQKRC 83


>UniRef50_P62536 Replication regulatory protein repA2 n=17 Tax=root
          RepID=COPB3_ECOLX
          Length = 86

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQTENAVTSS   KR  R+G P+   E+Q A++AR+  THK     ++  LKD + E  
Sbjct: 1  MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEIKVFVKNPLKDLMVEYC 60

Query: 61 DEEGITQAQMLEKLIESELKRRATL 85
          + EGITQAQ +EK+I+ EL+R   L
Sbjct: 61 EREGITQAQFVEKIIKDELQRLDIL 85


>UniRef50_O07483 RepB protein n=2 Tax=Enterobacteriaceae RepID=O07483_YEREN
          Length = 84

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%)

Query: 3  QTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADE 62
          Q  NAVTSSS  KR YRKG+P+ A ERQ++ +AR+  THK    ++   LK++  E+ + 
Sbjct: 8  QVGNAVTSSSNGKRIYRKGHPMSASERQQSFVARKRETHKEIKVLVPNALKNKFQEMCNA 67

Query: 63 EGITQAQMLEKLIE 76
           G++QA++  +LIE
Sbjct: 68 SGLSQAELFSRLIE 81


>UniRef50_Q7BQV5 CopB/RepC n=1 Tax=Serratia entomophila RepID=Q7BQV5_9ENTR
          Length = 90

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 49/78 (62%)

Query: 6  NAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGI 65
          N   S +  KR YRKG P+   E+Q  S  R+  THK     +   LK+ L EL +E+G+
Sbjct: 11 NIDDSFATGKRRYRKGAPLSGAEKQCVSTVRKKMTHKEIKIFVHNFLKEDLLELCNEDGL 70

Query: 66 TQAQMLEKLIESELKRRA 83
          TQA+++E+LIE E++RRA
Sbjct: 71 TQAELIERLIECEMERRA 88


>UniRef50_Q9ZEW7 CopB (Fragment) n=1 Tax=Klebsiella pneumoniae RepID=Q9ZEW7_KLEPN
          Length = 68

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 37/55 (67%)

Query: 21 GNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKLI 75
          GNP+ A ERQ++ LAR+  THK     + + +KD    + + +G+TQ++M+EKLI
Sbjct: 1  GNPMSAVERQQSHLARKKETHKEMRVYVTSEIKDEFRRMCEAQGVTQSEMIEKLI 55


>UniRef50_B2VB58 Putative plasmid copy control protein n=1 Tax=Erwinia
          tasmaniensis RepID=B2VB58_ERWT9
          Length = 79

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          M QT+N   S     R      P+ ARER+  S+AR+  TH   +  I    K +L E+ 
Sbjct: 1  MPQTDNPTQSEVNPSRKA----PLTARERKMRSVARKRETHSPLNVFIHNSTKQKLDEMC 56

Query: 61 DEEGITQAQMLEKLIE 76
           + G+TQA+ +E LI+
Sbjct: 57 KKSGLTQAEAIEHLIK 72


>UniRef50_Q65AF6 CopB protein n=1 Tax=Yersinia pestis RepID=Q65AF6_YERPE
          Length = 105

 Score = 39.7 bits (91), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 52 LKDRLSELADEEGITQAQMLEKLIESELKRRATL 85
          LKD +  + +EEG+TQAQ +E L+E EL  R  L
Sbjct: 65 LKDWMITICEEEGLTQAQFIETLLERELSERGVL 98


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q7BQV5 CopB/RepC n=1 Tax=Serratia entomophila RepID=Q7B...   107   2e-22
UniRef50_P62536 Replication regulatory protein repA2 n=17 Tax=ro...   104   7e-22
UniRef50_P03847 Replication regulatory protein repA2 n=63 Tax=ro...   103   2e-21
UniRef50_B4TLR5 Putative uncharacterized protein n=1 Tax=Salmone...   101   9e-21
UniRef50_O07483 RepB protein n=2 Tax=Enterobacteriaceae RepID=O0...    98   7e-20
UniRef50_Q7BTW9 Replication protein n=17 Tax=root RepID=Q7BTW9_Y...    96   3e-19
UniRef50_B2VB58 Putative plasmid copy control protein n=1 Tax=Er...    83   3e-15
UniRef50_Q9ZEW7 CopB (Fragment) n=1 Tax=Klebsiella pneumoniae Re...    72   6e-12

Sequences not found previously or not previously below threshold:

UniRef50_Q65AF6 CopB protein n=1 Tax=Yersinia pestis RepID=Q65AF...    46   4e-04
UniRef50_A1JUD2 Putative plasmid copy number control protein n=2...    39   0.043
UniRef50_C4NZV3 RepC n=4 Tax=Enterobacteriaceae RepID=C4NZV3_SALTY     38   0.090

>UniRef50_Q7BQV5 CopB/RepC n=1 Tax=Serratia entomophila RepID=Q7BQV5_9ENTR
          Length = 90

 Score =  107 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 1  MSQ-TENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSEL 59
          MSQ   N   S +  KR YRKG P+   E+Q  S  R+  THK     +   LK+ L EL
Sbjct: 5  MSQAIINIDDSFATGKRRYRKGAPLSGAEKQCVSTVRKKMTHKEIKIFVHNFLKEDLLEL 64

Query: 60 ADEEGITQAQMLEKLIESELKRRA 83
           +E+G+TQA+++E+LIE E++RRA
Sbjct: 65 CNEDGLTQAELIERLIECEMERRA 88


>UniRef50_P62536 Replication regulatory protein repA2 n=17 Tax=root
          RepID=COPB3_ECOLX
          Length = 86

 Score =  104 bits (260), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQTENAVTSS   KR  R+G P+   E+Q A++AR+  THK     ++  LKD + E  
Sbjct: 1  MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEIKVFVKNPLKDLMVEYC 60

Query: 61 DEEGITQAQMLEKLIESELKRRATL 85
          + EGITQAQ +EK+I+ EL+R   L
Sbjct: 61 EREGITQAQFVEKIIKDELQRLDIL 85


>UniRef50_P03847 Replication regulatory protein repA2 n=63 Tax=root
          RepID=COPB2_ECOLX
          Length = 84

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 59/83 (71%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQTENAVTSSSG KRAYRKGNP+   E+QR S+AR+  + K     ++ + K  L ++ 
Sbjct: 1  MSQTENAVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEVKVFLEPKYKAMLMQMC 60

Query: 61 DEEGITQAQMLEKLIESELKRRA 83
           E+G+TQA++L  LI+SE ++R 
Sbjct: 61 HEDGLTQAEVLTALIKSEAQKRC 83


>UniRef50_B4TLR5 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188
          RepID=B4TLR5_SALET
          Length = 89

 Score =  101 bits (251), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 62/85 (72%), Positives = 73/85 (85%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MS+TE+ VTSSS  KR YRKGNP+P +ERQ+AS+ARRS+THKAFHAVIQA LK++L E A
Sbjct: 5  MSKTEDTVTSSSKRKRGYRKGNPMPPKERQKASIARRSSTHKAFHAVIQANLKNKLREFA 64

Query: 61 DEEGITQAQMLEKLIESELKRRATL 85
          DEEGITQA+MLEKLIE E+ RR  L
Sbjct: 65 DEEGITQAKMLEKLIEEEIFRRNPL 89


>UniRef50_O07483 RepB protein n=2 Tax=Enterobacteriaceae RepID=O07483_YEREN
          Length = 84

 Score = 98.3 bits (243), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 50/76 (65%)

Query: 2  SQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELAD 61
           Q  NAVTSSS  KR YRKG+P+ A ERQ++ +AR+  THK    ++   LK++  E+ +
Sbjct: 7  PQVGNAVTSSSNGKRIYRKGHPMSASERQQSFVARKRETHKEIKVLVPNALKNKFQEMCN 66

Query: 62 EEGITQAQMLEKLIES 77
            G++QA++  +LIE 
Sbjct: 67 ASGLSQAELFSRLIEK 82


>UniRef50_Q7BTW9 Replication protein n=17 Tax=root RepID=Q7BTW9_YERPE
          Length = 84

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQ ENAVTSSS  KRAYRKGNP+   E+QR S++R+  THKA +  IQ  LK+ L +L 
Sbjct: 1  MSQIENAVTSSS--KRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLC 58

Query: 61 DEEGITQAQMLEKLIESELKRR 82
          ++ G+TQ +M+E+ I+ E   R
Sbjct: 59 EDSGLTQTEMIERWIQREKAAR 80


>UniRef50_B2VB58 Putative plasmid copy control protein n=1 Tax=Erwinia
          tasmaniensis RepID=B2VB58_ERWT9
          Length = 79

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          M QT+N   S     R      P+ ARER+  S+AR+  TH   +  I    K +L E+ 
Sbjct: 1  MPQTDNPTQSEVNPSRKA----PLTARERKMRSVARKRETHSPLNVFIHNSTKQKLDEMC 56

Query: 61 DEEGITQAQMLEKLIE 76
           + G+TQA+ +E LI+
Sbjct: 57 KKSGLTQAEAIEHLIK 72


>UniRef50_Q9ZEW7 CopB (Fragment) n=1 Tax=Klebsiella pneumoniae RepID=Q9ZEW7_KLEPN
          Length = 68

 Score = 71.7 bits (174), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 21 GNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKLIESELK 80
          GNP+ A ERQ++ LAR+  THK     + + +KD    + + +G+TQ++M+EKLI+  + 
Sbjct: 1  GNPMSAVERQQSHLARKKETHKEMRVYVTSEIKDEFRRMCEAQGVTQSEMIEKLIKDAVS 60

Query: 81 R 81
          +
Sbjct: 61 Q 61


>UniRef50_Q65AF6 CopB protein n=1 Tax=Yersinia pestis RepID=Q65AF6_YERPE
          Length = 105

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 33 SLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKLIESELKRRATL 85
          S   R+ T +    +    LKD +  + +EEG+TQAQ +E L+E EL  R  L
Sbjct: 46 STGSRAGTEERTGILHTNPLKDWMITICEEEGLTQAQFIETLLERELSERGVL 98


>UniRef50_A1JUD2 Putative plasmid copy number control protein n=2 Tax=Yersinia
          enterocolitica RepID=A1JUD2_YERE8
          Length = 81

 Score = 39.3 bits (90), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 15 KRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKL 74
          ++   KG        QR    RR  TH     V+   +K+ L  L+   G T+ +++E+L
Sbjct: 8  RKRRPKGPQKSNASYQRDFWERRKLTHSRIVMVVPNEVKEDLELLSSVYGKTKTEVIEQL 67

Query: 75 IE 76
          I+
Sbjct: 68 IK 69


>UniRef50_C4NZV3 RepC n=4 Tax=Enterobacteriaceae RepID=C4NZV3_SALTY
          Length = 82

 Score = 38.2 bits (87), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 15 KRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKL 74
          +R  +K NP    E QR    R   TH   +  +    K  L E+   + +TQA+++E L
Sbjct: 12 ERQEQKSNP----EFQREYRNRIRETHDQLNLYLPKDAKRMLIEITKVKKLTQAEVIEFL 67

Query: 75 IES 77
          ++S
Sbjct: 68 VKS 70


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q7BQV5 CopB/RepC n=1 Tax=Serratia entomophila RepID=Q7B...   105   4e-22
UniRef50_P62536 Replication regulatory protein repA2 n=17 Tax=ro...   105   5e-22
UniRef50_P03847 Replication regulatory protein repA2 n=63 Tax=ro...   101   7e-21
UniRef50_B4TLR5 Putative uncharacterized protein n=1 Tax=Salmone...    99   6e-20
UniRef50_O07483 RepB protein n=2 Tax=Enterobacteriaceae RepID=O0...    97   1e-19
UniRef50_Q7BTW9 Replication protein n=17 Tax=root RepID=Q7BTW9_Y...    97   1e-19
UniRef50_B2VB58 Putative plasmid copy control protein n=1 Tax=Er...    81   1e-14
UniRef50_Q9ZEW7 CopB (Fragment) n=1 Tax=Klebsiella pneumoniae Re...    74   2e-12
UniRef50_Q65AF6 CopB protein n=1 Tax=Yersinia pestis RepID=Q65AF...    70   2e-11

Sequences not found previously or not previously below threshold:

UniRef50_A1JUD2 Putative plasmid copy number control protein n=2...    39   0.056
UniRef50_C4NZV3 RepC n=4 Tax=Enterobacteriaceae RepID=C4NZV3_SALTY     38   0.088


CONVERGED!
>UniRef50_Q7BQV5 CopB/RepC n=1 Tax=Serratia entomophila RepID=Q7BQV5_9ENTR
          Length = 90

 Score =  105 bits (262), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 1  MSQ-TENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSEL 59
          MSQ   N   S +  KR YRKG P+   E+Q  S  R+  THK     +   LK+ L EL
Sbjct: 5  MSQAIINIDDSFATGKRRYRKGAPLSGAEKQCVSTVRKKMTHKEIKIFVHNFLKEDLLEL 64

Query: 60 ADEEGITQAQMLEKLIESELKRRA 83
           +E+G+TQA+++E+LIE E++RRA
Sbjct: 65 CNEDGLTQAELIERLIECEMERRA 88


>UniRef50_P62536 Replication regulatory protein repA2 n=17 Tax=root
          RepID=COPB3_ECOLX
          Length = 86

 Score =  105 bits (261), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQTENAVTSS   KR  R+G P+   E+Q A++AR+  THK     ++  LKD + E  
Sbjct: 1  MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEIKVFVKNPLKDLMVEYC 60

Query: 61 DEEGITQAQMLEKLIESELKRRATL 85
          + EGITQAQ +EK+I+ EL+R   L
Sbjct: 61 EREGITQAQFVEKIIKDELQRLDIL 85


>UniRef50_P03847 Replication regulatory protein repA2 n=63 Tax=root
          RepID=COPB2_ECOLX
          Length = 84

 Score =  101 bits (252), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 59/84 (70%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQTENAVTSSSG KRAYRKGNP+   E+QR S+AR+  + K     ++ + K  L ++ 
Sbjct: 1  MSQTENAVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEVKVFLEPKYKAMLMQMC 60

Query: 61 DEEGITQAQMLEKLIESELKRRAT 84
           E+G+TQA++L  LI+SE ++R  
Sbjct: 61 HEDGLTQAEVLTALIKSEAQKRCM 84


>UniRef50_B4TLR5 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188
          RepID=B4TLR5_SALET
          Length = 89

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/85 (72%), Positives = 73/85 (85%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MS+TE+ VTSSS  KR YRKGNP+P +ERQ+AS+ARRS+THKAFHAVIQA LK++L E A
Sbjct: 5  MSKTEDTVTSSSKRKRGYRKGNPMPPKERQKASIARRSSTHKAFHAVIQANLKNKLREFA 64

Query: 61 DEEGITQAQMLEKLIESELKRRATL 85
          DEEGITQA+MLEKLIE E+ RR  L
Sbjct: 65 DEEGITQAKMLEKLIEEEIFRRNPL 89


>UniRef50_O07483 RepB protein n=2 Tax=Enterobacteriaceae RepID=O07483_YEREN
          Length = 84

 Score = 97.5 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 50/77 (64%)

Query: 2  SQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELAD 61
           Q  NAVTSSS  KR YRKG+P+ A ERQ++ +AR+  THK    ++   LK++  E+ +
Sbjct: 7  PQVGNAVTSSSNGKRIYRKGHPMSASERQQSFVARKRETHKEIKVLVPNALKNKFQEMCN 66

Query: 62 EEGITQAQMLEKLIESE 78
            G++QA++  +LIE  
Sbjct: 67 ASGLSQAELFSRLIEKA 83


>UniRef50_Q7BTW9 Replication protein n=17 Tax=root RepID=Q7BTW9_YERPE
          Length = 84

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          MSQ ENAVTSSS  KRAYRKGNP+   E+QR S++R+  THKA +  IQ  LK+ L +L 
Sbjct: 1  MSQIENAVTSSS--KRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLC 58

Query: 61 DEEGITQAQMLEKLIESELKRR 82
          ++ G+TQ +M+E+ I+ E   R
Sbjct: 59 EDSGLTQTEMIERWIQREKAAR 80


>UniRef50_B2VB58 Putative plasmid copy control protein n=1 Tax=Erwinia
          tasmaniensis RepID=B2VB58_ERWT9
          Length = 79

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 1  MSQTENAVTSSSGNKRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELA 60
          M QT+N   S     R      P+ ARER+  S+AR+  TH   +  I    K +L E+ 
Sbjct: 1  MPQTDNPTQSEVNPSRKA----PLTARERKMRSVARKRETHSPLNVFIHNSTKQKLDEMC 56

Query: 61 DEEGITQAQMLEKLIE 76
           + G+TQA+ +E LI+
Sbjct: 57 KKSGLTQAEAIEHLIK 72


>UniRef50_Q9ZEW7 CopB (Fragment) n=1 Tax=Klebsiella pneumoniae RepID=Q9ZEW7_KLEPN
          Length = 68

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 21 GNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKLIESELK 80
          GNP+ A ERQ++ LAR+  THK     + + +KD    + + +G+TQ++M+EKLI+  + 
Sbjct: 1  GNPMSAVERQQSHLARKKETHKEMRVYVTSEIKDEFRRMCEAQGVTQSEMIEKLIKDAVS 60

Query: 81 R 81
          +
Sbjct: 61 Q 61


>UniRef50_Q65AF6 CopB protein n=1 Tax=Yersinia pestis RepID=Q65AF6_YERPE
          Length = 105

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 33 SLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKLIESELKRRATL 85
          S   R+ T +    +    LKD +  + +EEG+TQAQ +E L+E EL  R  L
Sbjct: 46 STGSRAGTEERTGILHTNPLKDWMITICEEEGLTQAQFIETLLERELSERGVL 98


>UniRef50_A1JUD2 Putative plasmid copy number control protein n=2 Tax=Yersinia
          enterocolitica RepID=A1JUD2_YERE8
          Length = 81

 Score = 38.9 bits (89), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 15 KRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKL 74
          ++   KG        QR    RR  TH     V+   +K+ L  L+   G T+ +++E+L
Sbjct: 8  RKRRPKGPQKSNASYQRDFWERRKLTHSRIVMVVPNEVKEDLELLSSVYGKTKTEVIEQL 67

Query: 75 IE 76
          I+
Sbjct: 68 IK 69


>UniRef50_C4NZV3 RepC n=4 Tax=Enterobacteriaceae RepID=C4NZV3_SALTY
          Length = 82

 Score = 38.2 bits (87), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 15 KRAYRKGNPVPARERQRASLARRSNTHKAFHAVIQARLKDRLSELADEEGITQAQMLEKL 74
          +R  +K NP    E QR    R   TH   +  +    K  L E+   + +TQA+++E L
Sbjct: 12 ERQEQKSNP----EFQREYRNRIRETHDQLNLYLPKDAKRMLIEITKVKKLTQAEVIEFL 67

Query: 75 IES 77
          ++S
Sbjct: 68 VKS 70


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.305    0.130    0.323 

Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,273,587
Number of Sequences: 3077464
Number of extensions: 9510070
Number of successful extensions: 40624
Number of sequences better than 1.0e-01: 14
Number of HSP's better than  0.1 without gapping: 35
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40584
Number of HSP's gapped (non-prelim): 37
length of query: 85
length of database: 1,040,396,356
effective HSP length: 55
effective length of query: 30
effective length of database: 871,135,836
effective search space: 26134075080
effective search space used: 26134075080
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 87 (38.2 bits)