Phyre 2 Results for P0AE78

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Email | l.a.kelley@imperial.ac.uk
Description | P0AE78
Date | Thu Jan 5 11:22:44 GMT 2012
Unique Job ID | f22426e3ab6aeee7

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ocmA_
Top template information
PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
Confidence and coverage
Confidence: | 100.0% | Coverage: | 50%
147 residues ( 50% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
243 residues ( 83%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | D | D | N | S | H | S | S | D | T | I | S | N | K | K | G | F | F | S | L | L | L | S | Q | L | F | H | G | E | P | K | N | R | D | E | L | L | A | L | I | R | D | S | G | Q | N | D | L | I | D | E | D | T | R | D | M | L | E | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | M | D | I | A | D | Q | R | V | R | D | I | M | I | P | R | S | Q | M | I | T | L | K | R | N | Q | T | L | D | E | C | L | D | V | I | I | E | S | A | H | S | R | F | P | V | I | S | E | D | K | D | H | I | E | G | I | L | M | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | L | L | P | F | M | R | S | D | A | E | A | F | S | M | D | K | V | L | R | Q | A | V | V | V | P | E | S | K | R | V | D | R | M | L | K | E | F | R | S | Q | R | Y | H | M | A | I | V | I | D | E | F | G | G | V | S | G | L | V | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | I | E | D | I | L | E | L | I | V | G | E | I | E | D | E | Y | D | E | E | D | D | I | D | F | R | Q | L | S | R | H | T | W | T | V | R | A | L | A | S | I | E | D | F | N | E | A | F | G | T | H | F | S | D | E | E | V | D | T | I | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | .
Sequence |  | G | L | V | M | Q | A | F | G | H | L | P | A | R | G | E | T | I | D | I | D | G | Y | Q | F | K | V | A | M | A | D | S | R | R | I | I | Q | V | H | V | K | I | P | D | D | S | P | Q | P | K | L | D | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ocmA_ |

### PDB 3ocm chain A

Region: 49 - 197
Aligned: 147
Modelled: 149
Confidence: 100.0%
Identity: 29%
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis

Phyre2
2 |
| c3ocmB_ |

### PDB 3ocm chain B

Region: 50 - 197
Aligned: 146
Modelled: 148
Confidence: 100.0%
Identity: 29%
PDB header:membrane protein
Chain: B: PDB Molecule:putative membrane protein;
PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis

Phyre2
3 |
| c3oi8B_ |

### PDB 3oi8 chain B

Region: 33 - 185
Aligned: 152
Modelled: 153
Confidence: 100.0%
Identity: 49%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of functionally unknown conserved protein domain2 from neisseria meningitidis mc58

Phyre2
4 |
| c3ocoB_ |

### PDB 3oco chain B

Region: 55 - 190
Aligned: 135
Modelled: 136
Confidence: 100.0%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains;
PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu

Phyre2
5 |
| c3lhhA_ |

### PDB 3lhh chain A

Region: 68 - 193
Aligned: 125
Modelled: 126
Confidence: 100.0%
Identity: 32%
PDB header:membrane protein
Chain: A: PDB Molecule:cbs domain protein;
PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1.

Phyre2
6 |
| c3lv9A_ |

### PDB 3lv9 chain A

Region: 62 - 192
Aligned: 130
Modelled: 131
Confidence: 100.0%
Identity: 33%
PDB header:membrane protein
Chain: A: PDB Molecule:putative transporter;
PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630

Phyre2
7 |
| c3i8nB_ |

### PDB 3i8n chain B

Region: 65 - 189
Aligned: 125
Modelled: 125
Confidence: 99.9%
Identity: 31%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp2912;
PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633.

Phyre2
8 |
| c3jtfB_ |

### PDB 3jtf chain B

Region: 66 - 192
Aligned: 125
Modelled: 127
Confidence: 99.9%
Identity: 53%
PDB header:transport protein
Chain: B: PDB Molecule:magnesium and cobalt efflux protein;
PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp

Phyre2
9 |
| c3hf7A_ |

### PDB 3hf7 chain A

Region: 66 - 190
Aligned: 125
Modelled: 125
Confidence: 99.9%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cbs-domain protein;
PDBTitle: the crystal structure of a cbs-domain pair with bound amp from2 klebsiella pneumoniae to 2.75a

Phyre2
10 |
| c3lfrB_ |

### PDB 3lfr chain B

Region: 65 - 193
Aligned: 128
Modelled: 129
Confidence: 99.9%
Identity: 56%
PDB header:transport protein
Chain: B: PDB Molecule:putative metal ion transporter;
PDBTitle: the crystal structure of a cbs domain from a putative metal2 ion transporter bound to amp from pseudomonas syringae to3 1.55a

Phyre2
11 |
| c3nqrD_ |

### PDB 3nqr chain D

Region: 67 - 189
Aligned: 123
Modelled: 123
Confidence: 99.9%
Identity: 93%
PDB header:transport protein
Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc;
PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2

Phyre2
12 |
| c3kxrA_ |

### PDB 3kxr chain A

Region: 32 - 188
Aligned: 151
Modelled: 157
Confidence: 99.9%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:magnesium transporter, putative;
PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1.

Phyre2
13 |
| c2yvxD_ |

### PDB 2yvx chain D

Region: 30 - 191
Aligned: 157
Modelled: 162
Confidence: 99.9%
Identity: 21%
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte

Phyre2
14 |
| c1yavB_ |

### PDB 1yav chain B

Region: 66 - 194
Aligned: 126
Modelled: 129
Confidence: 99.9%
Identity: 12%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14130;
PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis

Phyre2
15 |
| d2ooxe1 |

### PDB 2oox chain E domain 1

Region: 50 - 194
Aligned: 145
Modelled: 145
Confidence: 99.9%
Identity: 17%
Fold: CBS-domain pair
Superfamily: CBS-domain pair
Family: CBS-domain pair

Phyre2
16 |
| d2plia1 |

### PDB 2pli chain A domain 1

Region: 200 - 283
Aligned: 84
Modelled: 84
Confidence: 99.9%
Identity: 45%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
17 |
| c3ctuB_ |

### PDB 3ctu chain B

Region: 57 - 197
Aligned: 138
Modelled: 141
Confidence: 99.9%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cbs domain protein;
PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4

Phyre2
18 |
| c2ouxB_ |

### PDB 2oux chain B

Region: 33 - 188
Aligned: 144
Modelled: 156
Confidence: 99.9%
Identity: 18%
PDB header:transport protein
Chain: B: PDB Molecule:magnesium transporter;
PDBTitle: crystal structure of the soluble part of a magnesium transporter

Phyre2
19 |
| d2nyca1 |

### PDB 2nyc chain A domain 1

Region: 63 - 189
Aligned: 126
Modelled: 127
Confidence: 99.9%
Identity: 18%
Fold: CBS-domain pair
Superfamily: CBS-domain pair
Family: CBS-domain pair

Phyre2
20 |
| c2yvzA_ |

### PDB 2yvz chain A

Region: 48 - 188
Aligned: 136
Modelled: 141
Confidence: 99.9%
Identity: 20%
PDB header:transport protein
Chain: A: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form

Phyre2
21 |
| c3llbA_ |

### PDB 3llb chain A

Region: 202 - 282
Aligned: 81
Modelled: 81
Confidence: 99.9%
Identity: 43%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1

Phyre2
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105 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ocmA_ |
|  | 100.0 | 29 | PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
2 | c3ocmB_ |
|  | 100.0 | 29 | PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
3 | c3oi8B_ |
|  | 100.0 | 49 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of functionally unknown conserved protein domain2 from neisseria meningitidis mc58
4 | c3ocoB_ |
|  | 100.0 | 30 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains; PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu
5 | c3lhhA_ |
|  | 100.0 | 32 | PDB header:membrane protein Chain: A: PDB Molecule:cbs domain protein; PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1.
6 | c3lv9A_ |
|  | 100.0 | 33 | PDB header:membrane protein Chain: A: PDB Molecule:putative transporter; PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630
7 | c3i8nB_ |
|  | 99.9 | 31 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp2912; PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633.
8 | c3jtfB_ |
|  | 99.9 | 53 | PDB header:transport protein Chain: B: PDB Molecule:magnesium and cobalt efflux protein; PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp
9 | c3hf7A_ |
|  | 99.9 | 29 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cbs-domain protein; PDBTitle: the crystal structure of a cbs-domain pair with bound amp from2 klebsiella pneumoniae to 2.75a
10 | c3lfrB_ |
|  | 99.9 | 56 | PDB header:transport protein Chain: B: PDB Molecule:putative metal ion transporter; PDBTitle: the crystal structure of a cbs domain from a putative metal2 ion transporter bound to amp from pseudomonas syringae to3 1.55a
11 | c3nqrD_ |
|  | 99.9 | 93 | PDB header:transport protein Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc; PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2
12 | c3kxrA_ |
|  | 99.9 | 13 | PDB header:transport protein Chain: A: PDB Molecule:magnesium transporter, putative; PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1.
13 | c2yvxD_ |
|  | 99.9 | 21 | PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte
14 | c1yavB_ |
|  | 99.9 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14130; PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis
15 | d2ooxe1 |
|  | 99.9 | 17 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
16 | d2plia1 |
|  | 99.9 | 45 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
17 | c3ctuB_ |
|  | 99.9 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4
18 | c2ouxB_ |
|  | 99.9 | 18 | PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter
19 | d2nyca1 |
|  | 99.9 | 18 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
20 | c2yvzA_ |
|  | 99.9 | 20 | PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form
21 | c3llbA_ |
|  | 99.9 | 43 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
22 | c3dedB_ |
| not modelled | 99.9 | 22 | PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
23 | c3lqnA_ |
| not modelled | 99.9 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain-containing protein of2 unknown function from bacillus anthracis str. ames ancestor
24 | d3deda1 |
| not modelled | 99.9 | 22 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
25 | d2o1ra1 |
| not modelled | 99.9 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
26 | d2plsa1 |
| not modelled | 99.9 | 22 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
27 | d2nqwa1 |
| not modelled | 99.9 | 26 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
28 | d2p13a1 |
| not modelled | 99.8 | 27 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
29 | d2r2za1 |
| not modelled | 99.8 | 25 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
30 | c2emqA_ |
| not modelled | 99.8 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: hypothetical conserved protein (gk1048) from geobacillus kaustophilus
31 | c1zfjA_ |
| not modelled | 99.8 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
32 | d2d4za3 |
| not modelled | 99.8 | 22 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
33 | d1yava3 |
| not modelled | 99.8 | 14 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
34 | c2qh1B_ |
| not modelled | 99.8 | 19 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ta0289; PDBTitle: structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound2 state
35 | c2d4zB_ |
| not modelled | 99.8 | 17 | PDB header:transport protein Chain: B: PDB Molecule:chloride channel protein; PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0
36 | d2v8qe2 |
| not modelled | 99.8 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
37 | d2o3ga1 |
| not modelled | 99.8 | 20 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
38 | d2rk5a1 |
| not modelled | 99.8 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
39 | d3ddja1 |
| not modelled | 99.8 | 21 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
40 | c3fnaA_ |
| not modelled | 99.8 | 19 | PDB header:isomerase Chain: A: PDB Molecule:possible arabinose 5-phosphate isomerase; PDBTitle: crystal structure of the cbs pair of possible d-arabinose 5-phosphate2 isomerase yrbh from escherichia coli cft073
41 | d2ouxa2 |
| not modelled | 99.8 | 20 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
42 | c3pc3A_ |
| not modelled | 99.8 | 13 | PDB header:lyase Chain: A: PDB Molecule:cg1753, isoform a; PDBTitle: full length structure of cystathionine beta-synthase from drosophila2 in complex with aminoacrylate
43 | c3orgB_ |
| not modelled | 99.8 | 18 | PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter
44 | d2j9la1 |
| not modelled | 99.8 | 21 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
45 | d1vr9a3 |
| not modelled | 99.8 | 22 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
46 | c3fwrB_ |
| not modelled | 99.8 | 17 | PDB header:transcription Chain: B: PDB Molecule:yqzb protein; PDBTitle: crystal structure of the cbs domains from the bacillus subtilis ccpn2 repressor complexed with adp
47 | d2p3ha1 |
| not modelled | 99.8 | 20 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
48 | d2v8qe1 |
| not modelled | 99.8 | 17 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
49 | c1vr9B_ |
| not modelled | 99.8 | 22 | PDB header:unknown function Chain: B: PDB Molecule:cbs domain protein/act domain protein; PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution
50 | d2oaia1 |
| not modelled | 99.8 | 22 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
51 | d2yzqa1 |
| not modelled | 99.8 | 17 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
52 | d2ef7a1 |
| not modelled | 99.8 | 18 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
53 | d2rc3a1 |
| not modelled | 99.8 | 16 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
54 | d2yzia1 |
| not modelled | 99.8 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
55 | d1y5ha3 |
| not modelled | 99.8 | 20 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
56 | c2p9mD_ |
| not modelled | 99.8 | 20 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661
57 | c3gbyA_ |
| not modelled | 99.8 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ct1051; PDBTitle: crystal structure of a protein with unknown function ct10512 from chlorobium tepidum
58 | d1pvma4 |
| not modelled | 99.8 | 19 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
59 | c2pfiA_ |
| not modelled | 99.8 | 14 | PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka
60 | d1o50a3 |
| not modelled | 99.8 | 21 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
61 | d2riha1 |
| not modelled | 99.8 | 11 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
62 | d2yvxa2 |
| not modelled | 99.7 | 19 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
63 | d1pbja3 |
| not modelled | 99.7 | 20 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
64 | d2o16a3 |
| not modelled | 99.7 | 19 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
65 | c2qr1E_ |
| not modelled | 99.7 | 14 | PDB header:transferase Chain: E: PDB Molecule:protein c1556.08c; PDBTitle: crystal structure of the adenylate sensor from amp-activated protein2 kinase in complex with adp
66 | d1zfja4 |
| not modelled | 99.7 | 17 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
67 | d2ooxe2 |
| not modelled | 99.7 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
68 | c2qlvF_ |
| not modelled | 99.7 | 13 | PDB header:transferase/protein binding Chain: F: PDB Molecule:nuclear protein snf4; PDBTitle: crystal structure of the heterotrimer core of the s.2 cerevisiae ampk homolog snf1
69 | c2v8qE_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: E: PDB Molecule:5'-amp-activated protein kinase subunit gamma-1; PDBTitle: crystal structure of the regulatory fragment of mammalian2 ampk in complexes with amp
70 | c3kpbA_ |
| not modelled | 99.7 | 23 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine.
71 | c3ddjA_ |
| not modelled | 99.7 | 25 | PDB header:amp-binding protein Chain: A: PDB Molecule:cbs domain-containing protein; PDBTitle: crystal structure of a cbs domain-containing protein in complex with2 amp (sso3205) from sulfolobus solfataricus at 1.80 a resolution
72 | d3ddja2 |
| not modelled | 99.7 | 22 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
73 | c3fhmD_ |
| not modelled | 99.7 | 15 | PDB header:structural genomics, unknown function, n Chain: D: PDB Molecule:uncharacterized protein atu1752; PDBTitle: crystal structure of the cbs-domain containing protein atu1752 from2 agrobacterium tumefaciens
74 | d2p4pa1 |
| not modelled | 99.6 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
75 | c3kh5A_ |
| not modelled | 99.6 | 33 | PDB header:unknown function Chain: A: PDB Molecule:protein mj1225; PDBTitle: crystal structure of protein mj1225 from methanocaldococcus2 jannaschii, a putative archaeal homolog of g-ampk.
76 | c3l31B_ |
| not modelled | 99.6 | 28 | PDB header:hydrolase Chain: B: PDB Molecule:probable manganase-dependent inorganic PDBTitle: crystal structure of the cbs and drtgg domains of the2 regulatory region of clostridium perfringens3 pyrophosphatase complexed with the inhibitor, amp
77 | d2yzqa2 |
| not modelled | 99.5 | 26 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
78 | c2yzqA_ |
| not modelled | 99.5 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph1780; PDBTitle: crystal structure of uncharacterized conserved protein from2 pyrococcus horikoshii
79 | c3fioB_ |
| not modelled | 98.1 | 17 | PDB header:nucleotide binding protein, metal bindin Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain
80 | d1jcna4 |
| not modelled | 98.0 | 19 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
81 | d1jr1a4 |
| not modelled | 97.7 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
82 | d2pp6a1 |
| not modelled | 67.5 | 24 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like
83 | c3ce7A_ |
| not modelled | 42.7 | 17 | PDB header:biosynthetic protein Chain: A: PDB Molecule:specific mitochodrial acyl carrier protein; PDBTitle: crystal structure of toxoplasma specific mitochodrial acyl2 carrier protein, 59.m03510
84 | c3nwuB_ |
| not modelled | 39.9 | 27 | PDB header:hydrolase Chain: B: PDB Molecule:serine protease htra1; PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
85 | d1pbwa_ |
| not modelled | 39.5 | 7 | Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain)
86 | d1t3ta1 |
| not modelled | 39.0 | 20 | Fold:RuvA C-terminal domain-like Superfamily:FGAM synthase PurL, linker domain Family:FGAM synthase PurL, linker domain
87 | d1lcya2 |
| not modelled | 37.0 | 29 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
88 | c3nziA_ |
| not modelled | 36.9 | 27 | PDB header:hydrolase/hydrolase substrate Chain: A: PDB Molecule:serine protease htra1; PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
89 | d2a29a1 |
| not modelled | 36.7 | 17 | Fold:Metal cation-transporting ATPase, ATP-binding domain N Superfamily:Metal cation-transporting ATPase, ATP-binding domain N Family:Metal cation-transporting ATPase, ATP-binding domain N
90 | c2rceI_ |
| not modelled | 35.8 | 21 | PDB header:hydrolase Chain: I: PDB Molecule:protease degs; PDBTitle: dfp modified degs delta pdz
91 | d2qf3a1 |
| not modelled | 34.9 | 20 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
92 | c3k6zA_ |
| not modelled | 33.3 | 43 | PDB header:hydrolase Chain: A: PDB Molecule:possible membrane-associated serine protease; PDBTitle: crystal structure of rv3671c protease, inactive form
93 | d1p0za_ |
| not modelled | 32.6 | 33 | Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase
94 | c2l4bA_ |
| not modelled | 32.2 | 21 | PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a
95 | d1l1ja_ |
| not modelled | 30.7 | 29 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
96 | d1nq4a_ |
| not modelled | 30.6 | 19 | Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP)
97 | d1yj5a1 |
| not modelled | 29.9 | 18 | Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase
98 | c3stiC_ |
| not modelled | 29.5 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:protease degq; PDBTitle: crystal structure of the protease domain of degq from escherichia coli
99 | d1ky9a2 |
| not modelled | 29.1 | 21 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
100 | c3hczA_ |
| not modelled | 27.0 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible thiol-disulfide isomerase; PDBTitle: the crystal structure of a domain of possible thiol-disulfide2 isomerase from cytophaga hutchinsonii atcc 33406.
101 | c3lwaA_ |
| not modelled | 25.3 | 19 | PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a
102 | d1or5a_ |
| not modelled | 23.8 | 18 | Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP)
103 | d3by8a1 |
| not modelled | 22.9 | 25 | Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase
104 | d2z9ia2 |
| not modelled | 22.1 | 7 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
105 | d1tifa_ |
| not modelled | 21.8 | 28 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0