18/01/2012 16:24:45 : INFO  : Run start: Wed Jan 18 16:24:45 GMT 2012
18/01/2012 16:24:48 : INFO  : Initialised job
18/01/2012 16:24:49 : INFO  : Renaming log file 'phyre2_20120118_162444.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/phyre_20120118_162444.log'
18/01/2012 16:24:50 : INFO  : Initialised job:
Sequence
>batch____
MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDSGQNDLIDEDTRDMLEG
VMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK
DLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVT
IEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIG
GLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQVHVKIPDDSPQPKLDE

18/01/2012 16:24:50 : INFO  : Checked sequence
18/01/2012 16:24:52 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 16:24:53 : INFO  : PSI-BLAST 3 iterations
18/01/2012 16:27:09 : INFO  : PSI-BLAST 5 iterations
18/01/2012 16:29:40 : INFO  : Finished PSI-BLAST
18/01/2012 16:29:43 : INFO  : Running Buildali to generate a3m file
18/01/2012 16:42:16 : INFO  : Converting to HMM
18/01/2012 16:42:19 : INFO  : Calibrating HMM
18/01/2012 16:42:31 : INFO  : Searching HMM database
18/01/2012 16:48:39 : INFO  : Finished buildali
18/01/2012 16:48:41 : INFO  : Predicting secondary structure
18/01/2012 16:48:49 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 16:48:51 : INFO  : Predicting Disordered regions
18/01/2012 16:48:55 : INFO  : Predicted Disorder (Disopred)
18/01/2012 16:48:58 : INFO  : Running memsat_svm check
18/01/2012 16:53:29 : INFO  : Running memsat_svm full
18/01/2012 16:55:38 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f22426e3ab6aeee7'
18/01/2012 16:55:39 : INFO  : Initialising fold library search
18/01/2012 16:55:43 : INFO  : Initialised search input
18/01/2012 16:55:44 : INFO  : Building Ensemble models
18/01/2012 16:55:48 : INFO  : Building hh.c3oi8B_.model.1.pdb
18/01/2012 16:56:02 : INFO  : Building hh.c3jtfB_.model.2.pdb
18/01/2012 16:56:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/hh.c3jtfB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/c3jtfB_.8.pdb
18/01/2012 16:56:19 : INFO  : Building hh.c3lfrB_.model.3.pdb
18/01/2012 16:56:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/hh.c3lfrB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/c3lfrB_.10.pdb
18/01/2012 16:56:35 : INFO  : Building hh.c3nqrD_.model.4.pdb
18/01/2012 16:56:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/hh.c3nqrD_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/c3nqrD_.11.pdb
18/01/2012 16:56:51 : INFO  : Building hh.d2plia1.model.5.pdb
18/01/2012 16:57:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/hh.d2plia1.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/d2plia1.16.pdb
18/01/2012 16:57:05 : INFO  : Building hh.c3llbA_.model.6.pdb
18/01/2012 16:57:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/hh.c3llbA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f22426e3ab6aeee7/c3llbA_.21.pdb
18/01/2012 16:57:21 : INFO  : Building c3ocmA_.1.pdb
18/01/2012 16:57:36 : INFO  : Building c3ocmB_.2.pdb
18/01/2012 16:57:51 : INFO  : Building c3oi8B_.3.pdb
18/01/2012 16:58:05 : INFO  : Building c3ocoB_.4.pdb
18/01/2012 16:58:20 : INFO  : Building c3lhhA_.5.pdb
18/01/2012 16:58:34 : INFO  : Building c3lv9A_.6.pdb
18/01/2012 16:58:49 : INFO  : Building c3i8nB_.7.pdb
18/01/2012 16:59:03 : INFO  : Building c3jtfB_.8.pdb
18/01/2012 16:59:18 : INFO  : Building c3hf7A_.9.pdb
18/01/2012 16:59:31 : INFO  : Building c3lfrB_.10.pdb
18/01/2012 16:59:46 : INFO  : Building c3nqrD_.11.pdb
18/01/2012 17:00:00 : INFO  : Building c3kxrA_.12.pdb
18/01/2012 17:00:15 : INFO  : Building c2yvxD_.13.pdb
18/01/2012 17:00:29 : INFO  : Building c1yavB_.14.pdb
18/01/2012 17:00:43 : INFO  : Building d2ooxe1.15.pdb
18/01/2012 17:00:57 : INFO  : Building d2plia1.16.pdb
18/01/2012 17:01:10 : INFO  : Building c3ctuB_.17.pdb
18/01/2012 17:01:24 : INFO  : Building c2ouxB_.18.pdb
18/01/2012 17:01:40 : INFO  : Building d2nyca1.19.pdb
18/01/2012 17:01:53 : INFO  : Building c2yvzA_.20.pdb
18/01/2012 17:03:39 : INFO  : Finished HH model building
18/01/2012 17:03:40 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 17:04:39 : INFO  : html domain output complete ID 'f22426e3ab6aeee7'
18/01/2012 17:28:49 : INFO  : Run end  : Wed Jan 18 17:28:48 GMT 2012
