Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	L	P	P	L	S	K	I	P	L	I	L	R	P	Q	A	W	L	H	R	R	H	Y	G	E	V	L	S	P	I	R	W	W	G	R	I	P	F	I	F	Y	L	V	S	M	F	V	G	W	L	E	R	K	R	S	P	L	D	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																															?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	V	R	S	L	V	S	A	R	I	A	Q	M	C	L	C	E	F	C	V	D	I	T	S	M	K	V	A	E	R	T	G	S	S	D	K	L	L	A	V	A	D	W	R	Q	S	P	L	F	S	D	E	E	R	L	A	L	E	Y	A
Secondary structure
SS confidence
Disorder																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	A	A	S	V	T	P	P	T	V	D	D	A	L	R	T	R	L	A	A	H	F	D	A	Q	A	L	T	E	L	T	A	L	I	G	L	Q	N	L	S	A	R	F	N	S	A	M	D	I	P	A	Q	G	L	C	R	I	P	E	K
Secondary structure
SS confidence
Disorder																																																									?	?	?	?	?
Disorder confidence
		.	.
Sequence		R	S
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2prr chain A domain 1 Region: 2 - 178 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 19% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2pfx chain A domain 1 Region: 1 - 172 Aligned: 172 Modelled: 168 Confidence: 100.0% Identity: 15% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2oyo chain A domain 1 Region: 1 - 173 Aligned: 173 Modelled: 173 Confidence: 100.0% Identity: 23% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 3c1l chain B Region: 5 - 173 Aligned: 169 Modelled: 169 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105; PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution Phyre2 PDB 3lvy chain B Region: 2 - 173 Aligned: 170 Modelled: 172 Confidence: 100.0% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family; PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans Phyre2 PDB 2o4d chain A domain 1 Region: 31 - 172 Aligned: 140 Modelled: 142 Confidence: 100.0% Identity: 23% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2gmy chain A domain 1 Region: 31 - 171 Aligned: 139 Modelled: 141 Confidence: 100.0% Identity: 23% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2ouw chain A domain 1 Region: 2 - 172 Aligned: 121 Modelled: 121 Confidence: 99.9% Identity: 22% Fold: AhpD-like Superfamily: AhpD-like Family: TTHA0727-like Phyre2 PDB 2qeu chain A Region: 10 - 100 Aligned: 91 Modelled: 91 Confidence: 99.6% Identity: 13% PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution Phyre2 PDB 2cwq chain A domain 1 Region: 14 - 100 Aligned: 87 Modelled: 87 Confidence: 99.4% Identity: 18% Fold: AhpD-like Superfamily: AhpD-like Family: TTHA0727-like Phyre2 PDB 2q0t chain A domain 1 Region: 2 - 169 Aligned: 161 Modelled: 168 Confidence: 99.3% Identity: 18% Fold: AhpD-like Superfamily: AhpD-like Family: AhpD Phyre2 PDB 1p8c chain D Region: 32 - 100 Aligned: 68 Modelled: 69 Confidence: 99.3% Identity: 10% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima Phyre2 PDB 3bey chain C Region: 32 - 100 Aligned: 68 Modelled: 69 Confidence: 99.3% Identity: 16% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217 Phyre2 PDB 1vke chain A Region: 29 - 100 Aligned: 71 Modelled: 72 Confidence: 99.2% Identity: 10% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 3d7i chain B Region: 29 - 100 Aligned: 71 Modelled: 70 Confidence: 99.1% Identity: 11% PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein; PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution Phyre2 PDB 1vke chain B Region: 42 - 100 Aligned: 58 Modelled: 59 Confidence: 98.9% Identity: 10% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 1knc chain A Region: 55 - 100 Aligned: 46 Modelled: 46 Confidence: 98.8% Identity: 9% Fold: AhpD-like Superfamily: AhpD-like Family: AhpD Phyre2 PDB 2af7 chain A domain 1 Region: 37 - 100 Aligned: 64 Modelled: 64 Confidence: 97.6% Identity: 17% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 1a9x chain A domain 1 Region: 84 - 151 Aligned: 66 Modelled: 68 Confidence: 80.3% Identity: 12% Fold: Carbamoyl phosphate synthetase, large subunit connection domain Superfamily: Carbamoyl phosphate synthetase, large subunit connection domain Family: Carbamoyl phosphate synthetase, large subunit connection domain Phyre2 PDB 3bjx chain B Region: 1 - 160 Aligned: 109 Modelled: 112 Confidence: 75.1% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi; PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3 Phyre2 1 d2prra1 2 d2pfxa1 3 d2oyoa1 4 c3c1lB_ 5 c3lvyB_ 6 d2o4da1 7 d2gmya1 8 d2ouwa1 9 c2qeuA_ 10 d2cwqa1 11 d2q0ta1 12 c1p8cD_ 13 c3beyC_ 14 d1vkea_ 15 c3d7iB_ 16 d1vkeb_ 17 d1knca_ 18 d2af7a1 19 d1a9xa1 20 c3bjxB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2prra1 100.0 19 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 2 d2pfxa1 100.0 15 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 3 d2oyoa1 100.0 23 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 4 c3c1lB_ 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105; PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution 5 c3lvyB_ 100.0 15 PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family; PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans 6 d2o4da1 100.0 23 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 7 d2gmya1 100.0 23 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 8 d2ouwa1 99.9 22 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 9 c2qeuA_ 99.6 13 PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution 10 d2cwqa1 99.4 18 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 11 d2q0ta1 99.3 18 Fold:AhpD-like Superfamily:AhpD-like Family:AhpD 12 c1p8cD_ 99.3 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima 13 c3beyC_ 99.3 16 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217 14 d1vkea_ 99.2 10 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 15 c3d7iB_ 99.1 11 PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein; PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution 16 d1vkeb_ 98.9 10 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 17 d1knca_ 98.8 9 Fold:AhpD-like Superfamily:AhpD-like Family:AhpD 18 d2af7a1 97.6 17 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 19 d1a9xa1 80.3 12 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 20 c3bjxB_ 75.1 18 PDB header:hydrolase Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi; PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3 21 d2p7vb1 not modelled 33.9 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 22 c3gk0H_ not modelled 26.9 19 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 23 d1m5wa_ not modelled 24.4 15 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 24 c2k8sA_ not modelled 21.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6 25 d1khda1 not modelled 18.8 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 26 c2k9lA_ not modelled 18.6 13 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 27 d1wgla_ not modelled 17.2 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 28 c3l9vE_ not modelled 15.2 10 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 29 c1t3bA_ not modelled 13.4 22 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 30 c3dvwA_ not modelled 12.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis 31 c2k9mA_ not modelled 11.9 13 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 32 d1v8ga1 not modelled 11.8 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 33 d2fug21 not modelled 11.4 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 34 d1t3ba1 not modelled 11.4 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 35 c3f4tA_ not modelled 11.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a 36 c1jmtB_ not modelled 11.2 29 PDB header:rna binding protein Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer 37 d1beda_ not modelled 10.9 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 38 c2jvlA_ not modelled 10.5 20 PDB header:transcription Chain: A: PDB Molecule:trmbf1; PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei 39 c2dhyA_ not modelled 10.4 7 PDB header:immune system Chain: A: PDB Molecule:cue domain-containing protein 1; PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1) 40 c3gmfA_ not modelled 10.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans 41 d1ddfa_ not modelled 10.2 7 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 42 c1v57A_ not modelled 9.7 17 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 43 d1uoua1 not modelled 9.6 9 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 44 c2p0oA_ not modelled 9.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function 45 c1jzdA_ not modelled 9.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 46 d1eeja1 not modelled 9.3 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 47 c3bciA_ not modelled 9.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 48 c1hyuA_ not modelled 9.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: crystal structure of intact ahpf 49 d1u6pa_ not modelled 8.9 33 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains 50 c2yqfA_ not modelled 8.8 9 PDB header:protein binding Chain: A: PDB Molecule:ankyrin-1; PDBTitle: solution structure of the death domain of ankyrin-1 51 c1m6vE_ not modelled 8.7 12 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 52 d1uxda_ not modelled 8.6 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 53 d1dpua_ not modelled 8.6 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 54 c1dpuA_ not modelled 8.6 11 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 55 c3hd5A_ not modelled 8.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis 56 c3c7mB_ not modelled 8.4 19 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 57 c3gv1A_ not modelled 8.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 58 d1ngra_ not modelled 7.6 9 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 59 c3t72o_ not modelled 7.4 5 PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex 60 c2kw0A_ not modelled 7.4 0 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 61 c2jblC_ not modelled 7.4 17 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 62 c3feuA_ not modelled 7.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 63 c3h93A_ not modelled 7.3 17 PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba 64 c2hl7A_ not modelled 7.2 6 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 65 c3o6cA_ not modelled 7.1 16 PDB header:transferase Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni 66 c3msuA_ not modelled 7.1 16 PDB header:transferase Chain: A: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from francisella tularensis 67 c2remB_ not modelled 6.9 25 PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa 68 d1go3e2 not modelled 6.7 15 Fold:Dodecin subunit-like Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE) Family:N-terminal, heterodimerisation domain of RBP7 (RpoE) 69 d1fvka_ not modelled 6.5 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 70 d1t33a2 not modelled 6.5 6 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 71 d1abaa_ not modelled 6.5 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 72 c1eysC_ not modelled 6.4 19 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 73 d1eysc_ not modelled 6.4 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 74 d2c35b2 not modelled 6.4 19 Fold:Dodecin subunit-like Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE) Family:N-terminal, heterodimerisation domain of RBP7 (RpoE) 75 d1brwa1 not modelled 6.4 9 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 76 c3gykC_ not modelled 6.3 17 PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 77 c2w36B_ not modelled 6.3 11 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 78 c3thgA_ not modelled 6.3 11 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 79 c3oq9C_ not modelled 6.2 9 PDB header:apoptosis Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6; PDBTitle: structure of the fas/fadd death domain assembly 80 d2i5nc1 not modelled 6.2 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 81 d1pbwa_ not modelled 6.0 17 Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain) 82 d1eaka1 not modelled 6.0 12 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 83 d1x4pa1 not modelled 5.9 17 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 84 d1o17a1 not modelled 5.9 14 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 85 d2hsga1 not modelled 5.9 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 86 c3odnA_ not modelled 5.8 16 PDB header:membrane protein Chain: A: PDB Molecule:dally-like protein; PDBTitle: the crystal structure of drosophila dally-like protein core domain 87 d1ttya_ not modelled 5.8 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 88 c2qgpA_ not modelled 5.8 11 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 89 c1klsA_ not modelled 5.8 40 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of the zfy-6t[y10l] zinc finger 90 d1qpza1 not modelled 5.8 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 91 d1klra_ not modelled 5.7 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 92 c1klrA_ not modelled 5.7 40 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of the zfy-6t[y10f] zinc finger 93 d2cbia2 not modelled 5.7 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 94 c1xrzA_ not modelled 5.6 40 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of a zinc finger with cyclohexanylalanine2 substituted for the central aromatic residue 95 d2g7la2 not modelled 5.6 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 96 c2yx0A_ not modelled 5.6 43 PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 97 c2lcvA_ not modelled 5.5 10 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 98 c3ghaA_ not modelled 5.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 99 d2w6ka1 not modelled 5.2 15 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0