HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/f16854430ab674cf/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/f16854430ab674cf/query.hhm DATE Thu Jan 19 12:25:43 2012 LENG 35 match states, 35 columns in multiple alignment FILT 1 out of 3 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.4866 2.3786 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 97356318889999999999999999999987519 >Consensus mptkrfdkkhwkmvvvllaicgamlllrwaamiwg >batch____ MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 T 3 * * * * * * * * * * * * * * * * 0 * * * 3 0 * * * * * * 1000 0 0 K 4 * * * * * * * * 0 * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 0 * * * * * * 1000 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 D 7 * * 0 * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 K 8 * * * * * * * * 0 * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 K 9 * * * * * * * * 0 * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 H 10 * * * * * * 0 * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 W 11 * * * * * * * * * * * * * * * * * * 0 * 11 0 * * * * * * 1000 0 0 K 12 * * * * * * * * 0 * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 M 13 * * * * * * * * * * 0 * * * * * * * * * 13 0 * * * * * * 1000 0 0 V 14 * * * * * * * * * * * * * * * * * 0 * * 14 0 * * * * * * 1000 0 0 V 15 * * * * * * * * * * * * * * * * * 0 * * 15 0 * * * * * * 1000 0 0 V 16 * * * * * * * * * * * * * * * * * 0 * * 16 0 * * * * * * 1000 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 1000 0 0 L 18 * * * * * * * * * 0 * * * * * * * * * * 18 0 * * * * * * 1000 0 0 A 19 0 * * * * * * * * * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 I 20 * * * * * * * 0 * * * * * * * * * * * * 20 0 * * * * * * 1000 0 0 C 21 * 0 * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1000 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 A 23 0 * * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 M 24 * * * * * * * * * * 0 * * * * * * * * * 24 0 * * * * * * 1000 0 0 L 25 * * * * * * * * * 0 * * * * * * * * * * 25 0 * * * * * * 1000 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1000 0 0 L 27 * * * * * * * * * 0 * * * * * * * * * * 27 0 * * * * * * 1000 0 0 R 28 * * * * * * * * * * * * * * 0 * * * * * 28 0 * * * * * * 1000 0 0 W 29 * * * * * * * * * * * * * * * * * * 0 * 29 0 * * * * * * 1000 0 0 A 30 0 * * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 1000 0 0 A 31 0 * * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1000 0 0 M 32 * * * * * * * * * * 0 * * * * * * * * * 32 0 * * * * * * 1000 0 0 I 33 * * * * * * * 0 * * * * * * * * * * * * 33 0 * * * * * * 1000 0 0 W 34 * * * * * * * * * * * * * * * * * * 0 * 34 0 * * * * * * 1000 0 0 G 35 * * * * * 0 * * * * * * * * * * * * * * 35 0 * * 0 * * * 1000 0 0 //