18/01/2012 13:54:38 : INFO  : Run start: Wed Jan 18 13:54:38 GMT 2012
18/01/2012 13:54:38 : INFO  : Initialised job
18/01/2012 13:54:38 : INFO  : Renaming log file 'phyre2_20120118_135437.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/phyre_20120118_135437.log'
18/01/2012 13:54:38 : INFO  : Initialised job:
Sequence
>batch____
MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQAYEEALRIAQSPAKSV
WQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNYCSMEEIDELRWSLCTIAM
NTAHLSFECVVLLAERLRWLQEENTGEIDEEELESFLYAIAKGNVFNFQTILHLPVAVQN
DTIDFYQMFARIWSSHPQWLTLYLAQHRAVIIPDDAKLHRNLLRWYSAGRLDIPELLDYA
QSWRETEPDNEDAPYYEYAQRVYCGEGESLLAELCDYWREYPSTQADALMLQWCRQHRVD
YYPLLVMMIEARDLVNDQGKPLLYVPGDSARTRFHLYEILSDEKLSALGRSLVEMVLHKG
RKPRISLTRDTEHTLWPLYLVAKQLVQACQPTEESLMPIVSRLDAENRCPLEALIIRRLL
IQAANFTEKQTVEPEPQPQPMPVDDGGPGCLGIIKIIFYIFIFAGLIGKILHLFG

18/01/2012 13:54:38 : INFO  : Checked sequence
18/01/2012 13:54:39 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 13:54:39 : INFO  : PSI-BLAST 3 iterations
18/01/2012 13:56:43 : INFO  : PSI-BLAST 5 iterations
18/01/2012 13:59:23 : INFO  : Finished PSI-BLAST
18/01/2012 13:59:23 : INFO  : Running Buildali to generate a3m file
18/01/2012 14:02:19 : INFO  : Converting to HMM
18/01/2012 14:02:19 : INFO  : Calibrating HMM
18/01/2012 14:02:30 : INFO  : Searching HMM database
18/01/2012 14:11:05 : INFO  : Finished buildali
18/01/2012 14:11:05 : INFO  : Predicting secondary structure
18/01/2012 14:11:06 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 14:11:06 : INFO  : Predicting Disordered regions
18/01/2012 14:11:06 : INFO  : Predicted Disorder (Disopred)
18/01/2012 14:11:06 : INFO  : Running memsat_svm check
18/01/2012 14:13:18 : INFO  : Running memsat_svm full
18/01/2012 14:19:13 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f13a43100504e0ca'
18/01/2012 14:19:13 : INFO  : Initialising fold library search
18/01/2012 14:19:13 : INFO  : Initialised search input
18/01/2012 14:19:13 : INFO  : Building Ensemble models
18/01/2012 14:19:13 : INFO  : Building hh.c2pf4E_.model.1.pdb
18/01/2012 14:19:14 : INFO  : Building hh.d1gh6a_.model.2.pdb
18/01/2012 14:19:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.d1gh6a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/d1gh6a_.2.pdb
18/01/2012 14:19:14 : INFO  : Building hh.c3hhoA_.model.3.pdb
18/01/2012 14:19:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c3hhoA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c3hhoA_.4.pdb
18/01/2012 14:19:15 : INFO  : Building hh.c3apqB_.model.4.pdb
18/01/2012 14:19:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c3apqB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c3apqB_.5.pdb
18/01/2012 14:19:15 : INFO  : Building hh.c2ctqA_.model.5.pdb
18/01/2012 14:19:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c2ctqA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c2ctqA_.6.pdb
18/01/2012 14:19:16 : INFO  : Building hh.c2lgwA_.model.6.pdb
18/01/2012 14:19:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c2lgwA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c2lgwA_.8.pdb
18/01/2012 14:19:16 : INFO  : Building hh.d1iura_.model.7.pdb
18/01/2012 14:19:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.d1iura_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/d1iura_.13.pdb
18/01/2012 14:19:16 : INFO  : Building hh.c3beeB_.model.8.pdb
18/01/2012 14:19:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c3beeB_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c3beeB_.36.pdb
18/01/2012 14:19:17 : INFO  : Building hh.c3urzB_.model.9.pdb
18/01/2012 14:19:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c3urzB_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c3urzB_.38.pdb
18/01/2012 14:19:17 : INFO  : Building hh.c2r5sB_.model.10.pdb
18/01/2012 14:19:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/hh.c2r5sB_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f13a43100504e0ca/c2r5sB_.40.pdb
18/01/2012 14:19:17 : INFO  : Building c2pf4E_.1.pdb
18/01/2012 14:19:18 : INFO  : Building d1gh6a_.2.pdb
18/01/2012 14:19:20 : INFO  : Building c1fpoA_.3.pdb
18/01/2012 14:19:21 : INFO  : Building c3hhoA_.4.pdb
18/01/2012 14:19:21 : INFO  : Building c3apqB_.5.pdb
18/01/2012 14:19:21 : INFO  : Building c2ctqA_.6.pdb
18/01/2012 14:19:22 : INFO  : Building c3bvoA_.7.pdb
18/01/2012 14:19:22 : INFO  : Building c2lgwA_.8.pdb
18/01/2012 14:19:22 : INFO  : Building c2ys8A_.9.pdb
18/01/2012 14:19:22 : INFO  : Building c2kqxA_.10.pdb
18/01/2012 14:19:23 : INFO  : Building d1fafa_.11.pdb
18/01/2012 14:19:23 : INFO  : Building c2ctwA_.12.pdb
18/01/2012 14:19:23 : INFO  : Building d1iura_.13.pdb
18/01/2012 14:19:23 : INFO  : Building c2l6lA_.14.pdb
18/01/2012 14:19:24 : INFO  : Building c2ctrA_.15.pdb
18/01/2012 14:19:24 : INFO  : Building c2dmxA_.16.pdb
18/01/2012 14:19:24 : INFO  : Building c2yuaA_.17.pdb
18/01/2012 14:19:25 : INFO  : Building d1wjza_.18.pdb
18/01/2012 14:19:25 : INFO  : Building c2qsaA_.19.pdb
18/01/2012 14:19:25 : INFO  : Building d1xbla_.20.pdb
18/01/2012 14:19:34 : INFO  : Finished HH model building
18/01/2012 14:19:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 14:19:39 : INFO  : html domain output complete ID 'f13a43100504e0ca'
18/01/2012 14:29:55 : INFO  : Run end  : Wed Jan 18 14:29:55 GMT 2012
