 |
| Job Description | P26616 | | Confidence | 70.21% | Date | Thu Jan 5 11:43:01 GMT 2012 |
| Rank | 338 | Aligned Residues | 37 |
| % Identity | 19% | Template | c2hkoA_ |
| PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:lysine-specific histone demethylase 1; |
PDBTitle: crystal structure of lsd1
|
| Resolution | 2.80 Å |
|
|   |   |
291 | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | Q | L | S | E | K | K | I | V | F | L | G | A | G | S | A | G | C | G | I | A | E | M | I | I | S | Q | T | Q | R | E | G | L | S | E | E | A | A | R | Q | K | V | F | M | V | D | R | F |
| Query Conservation |   |
  |   |
|   |
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |
|   |   |
|
|   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   |
| Template Sequence |   |
P | T | K | K | T | G | K | V | I | I | I | G | S | G | V | S | G | L | A | A | A | R | Q | L | Q | S | F | G | M | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | T | L | L | E | A | R |
| Template Known Secondary structure |   |
| S | S |
| S |
|  |  |  |  |  |
|
| B |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
| S | S |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
274 | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 310 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|