BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (460 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organ... 924 0.0 UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobact... 558 e-157 UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria ... 506 e-142 UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira mul... 484 e-135 UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=... 434 e-120 UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacte... 430 e-119 UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicut... 426 e-117 UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteri... 421 e-116 UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae ... 412 e-113 UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termi... 412 e-113 UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bac... 405 e-111 UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas w... 394 e-108 UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridi... 392 e-107 UniRef50_B5AXB1 Protease (Fragment) n=171 Tax=cellular organisms... 390 e-107 UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteri... 390 e-107 UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C... 388 e-106 UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius t... 388 e-106 UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobac... 387 e-106 UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae ... 385 e-105 UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri... 384 e-105 UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma lingua... 384 e-105 UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=... 384 e-105 UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=... 384 e-105 UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succ... 382 e-104 UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus ... 381 e-104 UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=... 376 e-103 UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquifica... 375 e-102 UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteri... 375 e-102 UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C... 375 e-102 UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain pr... 375 e-102 UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B... 375 e-102 UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter ked... 373 e-102 UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum s... 373 e-102 UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloac... 372 e-101 UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobact... 371 e-101 UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum f... 370 e-101 UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocace... 369 e-100 UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickett... 369 e-100 UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium ... 367 e-100 UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae Re... 367 e-100 UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acet... 364 4e-99 UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae... 363 8e-99 UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickett... 363 1e-98 UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteri... 362 2e-98 UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacter... 360 6e-98 UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio ac... 358 2e-97 UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus ... 358 3e-97 UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales Re... 357 6e-97 UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria R... 357 6e-97 UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriacea... 356 1e-96 UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales... 355 2e-96 UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID... 355 3e-96 UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepI... 353 6e-96 UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisu... 353 9e-96 UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus Rep... 352 1e-95 UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacte... 352 2e-95 UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae... 352 2e-95 UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium m... 352 2e-95 UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteri... 352 2e-95 UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis ste... 350 5e-95 UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A... 350 6e-95 UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID... 349 1e-94 UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales ... 348 2e-94 UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales... 347 4e-94 UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A... 346 8e-94 UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candi... 345 2e-93 UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chrom... 343 9e-93 UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibac... 341 4e-92 UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilon... 339 1e-91 UniRef50_C7I4G6 DNA repair protein radA n=3 Tax=Bacteria RepID=C... 338 3e-91 UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales Re... 337 5e-91 UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio Re... 335 2e-90 UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1... 335 3e-90 UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibriona... 329 1e-88 UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vagi... 327 4e-88 UniRef50_A4SAK3 Predicted protein (Fragment) n=4 Tax=cellular or... 323 1e-86 UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp... 319 1e-85 UniRef50_B7GN99 DNA repair protein radA n=20 Tax=Bifidobacteriac... 317 6e-85 UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibri... 315 3e-84 UniRef50_Q9FK38 DNA repair protein-like n=8 Tax=rosids RepID=Q9F... 313 1e-83 UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium ... 313 1e-83 UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae R... 312 2e-83 UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID... 310 6e-83 UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thal... 310 8e-83 UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea may... 309 1e-82 UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms Rep... 308 3e-82 UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1... 307 6e-82 UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincen... 304 4e-81 UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinob... 302 2e-80 UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID... 302 2e-80 UniRef50_D1Y454 DNA repair protein radA n=1 Tax=Pyramidobacter p... 301 3e-80 UniRef50_C7RFC7 DNA repair protein radA n=1 Tax=Anaerococcus pre... 299 2e-79 UniRef50_C5CHP4 DNA repair protein radA n=1 Tax=Kosmotoga oleari... 298 3e-79 UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B... 296 1e-78 UniRef50_C1N8F6 DNA repair protein-related n=1 Tax=Micromonas pu... 293 8e-78 UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponem... 293 1e-77 UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae R... 290 8e-77 UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga letti... 284 6e-75 UniRef50_B8I5Q5 AAA ATPase n=13 Tax=Clostridiales RepID=B8I5Q5_C... 283 1e-74 UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltrans... 278 2e-73 UniRef50_B5W8S1 DNA repair protein radA n=2 Tax=Arthrospira RepI... 275 3e-72 UniRef50_C9M763 DNA repair protein RadA n=1 Tax=Jonquetella anth... 273 8e-72 UniRef50_B7FVI7 Predicted protein (Fragment) n=2 Tax=Bacillariop... 269 1e-70 UniRef50_D0N9B5 DNA repair protein radA n=1 Tax=Phytophthora inf... 218 4e-55 UniRef50_UPI0000382A4B COG1066: Predicted ATP-dependent serine p... 214 4e-54 UniRef50_B5Y8V7 DNA repair protein n=1 Tax=Coprothermobacter pro... 205 3e-51 UniRef50_C1TS01 Putative uncharacterized protein (Fragment) n=1 ... 180 9e-44 UniRef50_C0DC21 Putative uncharacterized protein (Fragment) n=1 ... 147 8e-34 UniRef50_C1TLA8 Putative uncharacterized protein n=1 Tax=Dethios... 146 1e-33 UniRef50_UPI00019062BC DNA repair protein RadA n=1 Tax=Rhizobium... 132 2e-29 UniRef50_C6NU33 DNA repair protein RadA (Fragment) n=1 Tax=Acidi... 131 6e-29 UniRef50_C0B7I7 Putative uncharacterized protein n=1 Tax=Coproco... 107 8e-22 UniRef50_UPI0001902794 DNA repair protein RadA n=1 Tax=Rhizobium... 96 4e-18 UniRef50_C0D1P1 Putative uncharacterized protein n=1 Tax=Clostri... 87 9e-16 UniRef50_A8I6M1 Predicted protein n=1 Tax=Chlamydomonas reinhard... 79 4e-13 UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selen... 72 4e-11 UniRef50_B0TA55 ATP-dependent lon protease n=22 Tax=Clostridia R... 70 2e-10 UniRef50_Q0SPS3 ATP-dependent protease n=25 Tax=Clostridia RepID... 68 6e-10 UniRef50_B5ISK3 KaiC domain protein n=5 Tax=Thermococcaceae RepI... 68 9e-10 UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium... 67 1e-09 UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepI... 64 1e-08 UniRef50_C6Q2E8 Peptidase S16 lon domain protein (Fragment) n=1 ... 62 3e-08 UniRef50_B6YWB4 ATPase n=3 Tax=Thermococcus RepID=B6YWB4_THEON 62 6e-08 UniRef50_Q58812 Putative protease La homolog n=5 Tax=Methanocald... 61 8e-08 UniRef50_C4V1V9 ATP-dependent protease n=2 Tax=Selenomonas RepID... 61 1e-07 UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC 60 1e-07 UniRef50_C9KM28 ATP-dependent protease, Lon family n=3 Tax=Clost... 60 2e-07 UniRef50_Q74NJ8 NEQ349 n=1 Tax=Nanoarchaeum equitans RepID=Q74NJ... 60 2e-07 UniRef50_Q2IEE4 Putative circadian clock protein, KaiC n=1 Tax=A... 58 8e-07 UniRef50_A4VNI0 Circadian oscillation regulator n=49 Tax=Bacteri... 57 2e-06 UniRef50_A6UPI7 Peptidase S16, Lon-like protease n=1 Tax=Methano... 57 2e-06 UniRef50_A6UWQ4 Peptidase S16, Lon-like protease n=6 Tax=Methano... 56 3e-06 UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=C... 56 4e-06 UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanoco... 55 5e-06 UniRef50_P42425 ATP-dependent protease La homolog n=146 Tax=Firm... 55 6e-06 UniRef50_Q0AB05 Putative circadian clock protein, KaiC n=1 Tax=A... 54 2e-05 UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=C... 53 2e-05 UniRef50_B2JVR0 Non-specific serine/threonine protein kinase n=6... 52 4e-05 UniRef50_Q48N05 Circadian oscillation regulator KaiC homolog n=6... 52 4e-05 UniRef50_C8W5T4 Sigma 54 interacting domain protein n=10 Tax=Fir... 52 5e-05 UniRef50_D2RH30 Putative circadian clock protein, KaiC n=1 Tax=A... 52 5e-05 UniRef50_C1VAG2 RecA-superfamily ATPase possibly involved in sig... 52 5e-05 UniRef50_O28184 DNA repair and recombination protein radB n=3 Ta... 52 7e-05 UniRef50_Q742I0 Putative uncharacterized protein n=1 Tax=Mycobac... 51 7e-05 UniRef50_D2RVL7 Putative circadian clock protein, KaiC n=1 Tax=H... 51 9e-05 UniRef50_Q1QT32 Putative circadian clock protein, KaiC n=1 Tax=C... 50 1e-04 UniRef50_Q9XW87 Protein Y75B8A.4, partially confirmed by transcr... 50 1e-04 UniRef50_C7NVJ6 Putative circadian clock protein, KaiC n=1 Tax=H... 50 1e-04 UniRef50_D2EGM1 Putative circadian clock protein, KaiC n=1 Tax=C... 50 2e-04 UniRef50_O26878 Putative protease La homolog type 1 n=30 Tax=Arc... 50 2e-04 UniRef50_A6TM65 Sporulation protease LonB n=3 Tax=Clostridiaceae... 50 2e-04 UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Ta... 50 2e-04 UniRef50_A5UNJ6 ATP-dependent protease La, LonB n=2 Tax=Methanob... 50 2e-04 UniRef50_A2BKH9 Putative RecA ATPase n=1 Tax=Hyperthermus butyli... 50 2e-04 UniRef50_A9W785 Non-specific serine/threonine protein kinase n=1... 50 2e-04 UniRef50_B5YK35 ATP-dependent protease La 1 n=1 Tax=Thermodesulf... 50 2e-04 UniRef50_C9M9C7 Putative DnaB helicase n=1 Tax=Jonquetella anthr... 50 2e-04 UniRef50_A9WC99 Non-specific serine/threonine protein kinase n=9... 50 3e-04 UniRef50_Q9UYC6 Pab lon intein n=1 Tax=Pyrococcus abyssi RepID=L... 50 3e-04 UniRef50_Q0W872 Predicted RecA-family ATPase n=2 Tax=Euryarchaeo... 50 3e-04 UniRef50_D0LT56 Putative circadian clock protein, KaiC n=1 Tax=H... 49 3e-04 UniRef50_C6A5H8 ATPase, RecA superfamily n=4 Tax=Thermococcus Re... 49 4e-04 UniRef50_C5A1G9 RecA family AAA ATPase n=3 Tax=Thermococcus RepI... 49 4e-04 UniRef50_Q3ADP9 Conserved domain protein n=3 Tax=Clostridia RepI... 49 4e-04 UniRef50_C7MB83 Mg chelatase-related protein n=18 Tax=Actinomyce... 49 4e-04 UniRef50_Q08YR0 Putative uncharacterized protein n=1 Tax=Stigmat... 49 5e-04 UniRef50_Q3IN66 Probable KaiC-like transcriptional regulator 1 n... 49 5e-04 UniRef50_Q2SRX5 ATP-dependent protease La n=4 Tax=Mollicutes Rep... 49 5e-04 UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprote... 49 5e-04 UniRef50_C7GBX2 Mg chelatase-like protein n=3 Tax=Clostridiales ... 49 6e-04 UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Ta... 49 6e-04 UniRef50_A1WZ80 Circadian clock protein KaiC n=1 Tax=Halorhodosp... 48 7e-04 UniRef50_Q7U9A8 Possible DNA repair protein sms homolog [truncat... 48 8e-04 UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y... 48 8e-04 UniRef50_UPI000185C693 conserved hypothetical protein n=1 Tax=Ca... 48 9e-04 UniRef50_C0BBH8 Putative uncharacterized protein n=1 Tax=Coproco... 48 0.001 UniRef50_Q5ZWH0 DNA integration/recombination/inversion protein ... 48 0.001 UniRef50_A6EJ04 Magnesium chelatase, subunit ChlI n=4 Tax=Bacter... 48 0.001 UniRef50_D2RXS1 Sigma 54 interacting domain protein n=7 Tax=Eury... 48 0.001 UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q... 47 0.001 UniRef50_P73860 KaiC-like protein 1 n=35 Tax=cellular organisms ... 47 0.001 UniRef50_B9L069 ATP-dependent protease La n=1 Tax=Thermomicrobiu... 47 0.001 UniRef50_D1CDU0 Non-specific serine/threonine protein kinase n=1... 47 0.002 UniRef50_B1C8C1 ATP-dependent protease La n=1 Tax=Anaerofustis s... 47 0.002 UniRef50_Q725X1 ATP-dependent protease La, truncation n=5 Tax=De... 46 0.002 UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 46 0.002 UniRef50_Q7NAM5 DnaB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 46 0.003 UniRef50_Q9ZJL3 ATP-dependent protease La n=17 Tax=Campylobacter... 46 0.003 UniRef50_Q5LLE1 Putative uncharacterized protein n=1 Tax=Ruegeri... 46 0.003 UniRef50_C5N2V2 Putative uncharacterized protein (Fragment) n=1 ... 46 0.003 UniRef50_B9WC87 DNA repair protein, putative n=1 Tax=Candida dub... 46 0.003 UniRef50_Q4UA75 DNA repair (Rad51 homologue) protein, putative n... 46 0.003 UniRef50_O67649 Putative uncharacterized protein n=1 Tax=Aquifex... 46 0.003 UniRef50_D2EGD6 Peptidase S16, Lon protease n=2 Tax=Euryarchaeot... 46 0.003 UniRef50_O27166 Conserved protein n=1 Tax=Methanothermobacter th... 46 0.003 UniRef50_D2RE70 Putative circadian clock protein, KaiC n=1 Tax=A... 46 0.003 UniRef50_O58221 Pho lon intein n=9 Tax=Archaea RepID=LONH_PYRHO 46 0.003 UniRef50_C7DGV1 Peptidase S16, Lon-like protease n=1 Tax=Candida... 46 0.004 UniRef50_D1YUH4 Putative uncharacterized protein n=1 Tax=Methano... 46 0.004 UniRef50_UPI00016C4483 putative circadian clock protein, KaiC n=... 46 0.004 UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukar... 46 0.004 UniRef50_B8GX12 ATP-dependent protease La n=79 Tax=cellular orga... 45 0.004 UniRef50_A8SNF0 ATP-dependent protease La n=3 Tax=Clostridiales ... 45 0.004 UniRef50_D2RQC1 Putative circadian clock protein, KaiC n=1 Tax=H... 45 0.004 UniRef50_D1CG88 DnaB domain protein helicase domain protein n=1 ... 45 0.004 UniRef50_Q4P2V5 Lon protease homolog n=4 Tax=cellular organisms ... 45 0.005 UniRef50_Q3ADU5 DNA repair protein RadA domain protein n=1 Tax=C... 45 0.005 UniRef50_A4JD21 DnaB domain protein helicase, C-terminal domain ... 45 0.005 UniRef50_A6XWS5 ATP-dependent protease La n=4 Tax=Bacteria RepID... 45 0.005 UniRef50_A9ETZ9 ATP-dependent protease La n=2 Tax=Bacteria RepID... 45 0.005 UniRef50_Q12XJ8 KaiC domain-containing protein n=5 Tax=Methanosa... 45 0.005 UniRef50_B4SN90 Non-specific serine/threonine protein kinase n=2... 45 0.005 UniRef50_D1Z1M4 Putative uncharacterized protein n=1 Tax=Methano... 45 0.005 UniRef50_C3X6V3 ATP-dependent protease La n=2 Tax=Oxalobacter fo... 45 0.005 UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borre... 45 0.005 UniRef50_A9KNG8 Mg chelatase, subunit ChlI n=4 Tax=Clostridiales... 45 0.006 UniRef50_C4WXJ0 ACYPI007384 protein n=2 Tax=Acyrthosiphon pisum ... 45 0.006 UniRef50_B1ZPK0 Putative circadian clock protein, KaiC n=3 Tax=B... 45 0.006 UniRef50_P43864 ATP-dependent protease La n=107 Tax=Bacteria Rep... 45 0.006 UniRef50_D2NTN4 Predicted ATPase with chaperone activity n=2 Tax... 45 0.006 UniRef50_A2BL46 Predicted ATPase n=17 Tax=Archaea RepID=A2BL46_H... 45 0.007 UniRef50_Q0W053 Putative ATPase (KaiC family) n=1 Tax=uncultured... 45 0.007 UniRef50_A9C2T7 DnaB domain protein helicase domain protein n=1 ... 45 0.007 UniRef50_C1AAM1 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 45 0.008 UniRef50_B5I9K2 KaiC domain protein n=1 Tax=Aciduliprofundum boo... 45 0.008 UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter m... 44 0.009 UniRef50_D0Y8T6 Endopeptidase La n=1 Tax=Dehalococcoides sp. GT ... 44 0.012 UniRef50_Q83FI8 Replicative DNA helicase n=2 Tax=Tropheryma whip... 44 0.012 UniRef50_D2RH64 Putative circadian clock protein, KaiC n=1 Tax=A... 44 0.012 UniRef50_P59966 Endonuclease PI-MboHIP n=20 Tax=Corynebacterinea... 44 0.012 UniRef50_B7FSL4 Lon protease homolog n=2 Tax=Bacillariophyta Rep... 44 0.013 UniRef50_Q17VK6 Putative uncharacterized protein Hac prophage II... 44 0.013 UniRef50_C1TMM3 ATP-dependent protease La n=2 Tax=Synergistaceae... 44 0.013 UniRef50_O69300 ATP-dependent protease La n=24 Tax=Epsilonproteo... 44 0.014 UniRef50_D2LZH6 Putative circadian clock protein, KaiC n=1 Tax=B... 44 0.014 UniRef50_A7U110 Circadian regulator n=5 Tax=Halobacteriaceae Rep... 44 0.014 UniRef50_O29797 Putative uncharacterized protein n=1 Tax=Archaeo... 44 0.014 UniRef50_Q12V32 Circadian clock protein kinase KaiC n=1 Tax=Meth... 44 0.014 UniRef50_C5AJW6 Rad553 n=1 Tax=Burkholderia glumae BGR1 RepID=C5... 44 0.015 UniRef50_P0A9M1 ATP-dependent protease La n=430 Tax=cellular org... 44 0.015 UniRef50_B9L019 ATP-dependent protease La n=8 Tax=Bacteria RepID... 44 0.015 UniRef50_Q4UJI0 ATP-dependent protease La, bacterial type n=1 Ta... 44 0.016 UniRef50_UPI00006CB33C hypothetical protein TTHERM_00459230 n=1 ... 44 0.018 UniRef50_A8ASU7 Gp113 n=2 Tax=Listeria phage A511 RepID=A8ASU7_B... 44 0.018 UniRef50_A9B3R2 ATP-dependent protease La n=8 Tax=Bacteria RepID... 44 0.019 UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=C... 43 0.020 UniRef50_C5A2Z8 RecA family AAA ATPase n=7 Tax=Thermococcaceae R... 43 0.021 UniRef50_B1AIY7 ATP-dependent protease La n=15 Tax=Ureaplasma Re... 43 0.021 UniRef50_A7VFF6 Putative uncharacterized protein n=2 Tax=Clostri... 43 0.021 UniRef50_Q5A2U1 Putative uncharacterized protein RAD57 n=1 Tax=C... 43 0.023 >UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organisms RepID=RADA_SALTY Length = 460 Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/460 (97%), Positives = 456/460 (99%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP VARNERLSGYAGSAGV Sbjct: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGV 60 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA Sbjct: 61 SKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +QMKTLYVTGEESLQQVAMRAHRLGLPT NLNMLSETSIEQICLIAEEEQPKLMVIDSIQ Sbjct: 121 EQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 VMHMAD+QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS Sbjct: 181 VMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV Sbjct: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM+DQDVFV Sbjct: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFV 360 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA Sbjct: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 KHGFRRAIVPAANVPKK PEGM +FGVKKL+DALSVFDDL Sbjct: 421 KHGFRRAIVPAANVPKKPPEGMLVFGVKKLADALSVFDDL 460 >UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobacteria RepID=B0RY20_XANCB Length = 463 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 279/462 (60%), Positives = 347/462 (75%), Gaps = 12/462 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL-------AASPMVARNERLSG 53 MAKA K A+VC ECGA+Y +WQGQC+ C WNT++E+ L ASP +R SG Sbjct: 1 MAKA-KTAYVCGECGAEYTKWQGQCTECGVWNTLSEIVLESATPAGKASPAASRR---SG 56 Query: 54 YAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 +AG K+ L D+ E R STG EFDRVLGGG+V G+ +LIGG+PG GKSTLLL Sbjct: 57 WAGKTEAPKITALKDVQQSEQARVSTGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLL 116 Query: 114 QTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKL 173 Q L +A + LYVTGEESL QVA RA RL LP + LN L+ET IE I A +PKL Sbjct: 117 QALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAETGIENILQHASVARPKL 176 Query: 174 MVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL 233 +V DS+Q + + ++PGSV+QVRE+AA L R+AK G A+ +VGHVTK+G +AGP+VL Sbjct: 177 IVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVL 236 Query: 234 EHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE 293 EH +D + +G++ SRFR LR+ KNRFGAVNELGVFAM E+GL+EVSNPSAIFLS G Sbjct: 237 EHMVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGST 296 Query: 294 VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM 353 GS VMV EGTRPL+VE+QALVD S ++NPRRVAVGLEQNRLA+LLAVLHRHGG+ + Sbjct: 297 HQPGSCVMVTREGTRPLMVEVQALVDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVV 356 Query: 354 ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 DQDVFVNVVGG++V ET+ADL +LLA++SSLRDRPL + + FGEVGL+GEIRPVP+G+ Sbjct: 357 GDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGEVGLSGEIRPVPNGE 416 Query: 414 ERISEAAKHGFRRAIVPAANVPKKAP-EGMQIFGVKKLSDAL 454 +R+ EAA HGF+RAIVP AN PK + +GM+I V++LS AL Sbjct: 417 DRLKEAATHGFKRAIVPKANAPKASSIKGMEIVAVERLSQAL 458 >UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria RepID=Q13X95_BURXL Length = 458 Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust. Identities = 262/459 (57%), Positives = 342/459 (74%), Gaps = 13/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK ++C+ECG P+W GQC +C+AWNT+ E +A +P R + L A Sbjct: 1 MAK-PKTVYICSECGGQSPKWAGQCPSCNAWNTLVE-SVAEAPSTHRFQSL------AKS 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A V++L+DI ++PRF+TG EFDRVLGGG+VPG +LIGG+PG GKSTLLLQ+L ++A Sbjct: 53 APVRRLADIEASDVPRFTTGVSEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIA 112 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGL-----PTDNLNMLSETSIEQICLIAEEEQPKLMV 175 + LY++GEES Q+A+RA RL L L +L+E +E+I E++P + V Sbjct: 113 ADKRALYISGEESAAQIALRAQRLSLLEPGSRASELQLLAEIQLEKIQATIAEQRPDVAV 172 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 IDSIQ ++ + S+PGSVAQVRE AA LTR AK G I+MVGHVTK+G+LAGP+VLEH Sbjct: 173 IDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEH 232 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +GD S +R +R+ KNRFGAVNELGVFAMTE+GLR V+NPSA+FLS+ ++ Sbjct: 233 IVDTVLYFEGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSV 292 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 +GS V+V EGTRPLLVE+QALVD + NPRR+AVGLEQNRLA+LLAVLHRH G+ D Sbjct: 293 AGSCVLVTQEGTRPLLVEVQALVDAANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFD 352 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 QDVF+N VGGVK+TE +ADLA+LLA+ SS+R++PLP+ LVVFGEVGLAGEIRP P GQER Sbjct: 353 QDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQER 412 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 + EAAK GF A++P AN PK+ EG+Q+ V+++ A+ Sbjct: 413 LKEAAKLGFSVAVIPRANAPKQPIEGLQVVAVERIEQAI 451 >UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y821_NITMU Length = 452 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 262/459 (57%), Positives = 331/459 (72%), Gaps = 14/459 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSG-YAGSAG 59 MAK+ K + C ECG +WQGQC C AWNT+ E A +E+ + + + Sbjct: 1 MAKS-KSTYSCTECGGQTLKWQGQCPHCQAWNTLVE---------AMSEKAAARFTPVSE 50 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK- 118 +VQ LS++ EE R+STG EFDRVLGGG+V G +L+GG+PG GKSTLLLQ LC Sbjct: 51 SREVQSLSEVEAEEEQRYSTGLLEFDRVLGGGLVQGGVVLLGGDPGIGKSTLLLQALCNM 110 Query: 119 --LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 L LYV+GEES +QVAMRA R+G+ L++L+E +E+I + E +P + VI Sbjct: 111 SLLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVLAERKPDVAVI 170 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ ++ +QS+PGSVAQVRE AA LTR AK G +++VGHVTK+G+LAGP+VLEH Sbjct: 171 DSIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHM 230 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +GD S FR +R+ KNRFGAVNELGVFAMTE+GLREVSNPSA+FLS Sbjct: 231 VDTVLYFEGDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVP 290 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS +MV EGTRPLLVEIQALVD + N RR++VGLEQNRLA+LLAVLHRH G+ DQ Sbjct: 291 GSCIMVTQEGTRPLLVEIQALVDEAHSPNARRLSVGLEQNRLAMLLAVLHRHAGIACFDQ 350 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DVFVN VGGVK+TE ADLA+LLA+VSSL++RPLP+ VVFGEVGLAGE+RPV G ER+ Sbjct: 351 DVFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEVRPVQRGLERL 410 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 EAAK GF +AIVP AN PK P G++I V+++ +A++ Sbjct: 411 REAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVA 449 >UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=B1YGS3_EXIS2 Length = 461 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/457 (48%), Positives = 304/457 (66%), Gaps = 17/457 (3%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV----- 60 K FVC CG + P+W G+CS C WNT+ E + E GSA V Sbjct: 8 KTKFVCQSCGTESPKWMGRCSGCGEWNTMVEEVV---------EEKKARRGSAFVHTTTK 58 Query: 61 -AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 K ++LS+I +E R TG EFDRVLGGG+VPGS +L+GG+PG GKST+LLQT +L Sbjct: 59 QLKPERLSNILSQEESRVFTGSGEFDRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSARL 118 Query: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 A + K LY++GEESL+Q +RA RLGLPT +L +LSET + I + +EE P ++IDS Sbjct: 119 AARGEKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIERVVDEENPAFLIIDS 178 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ +++ ++QS+PGSV QVRE A L + AK+RG+AI +VGHVTK GS+AGP++LEH +D Sbjct: 179 IQTVYIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVD 238 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +G+ FR LR+ KNRFG+ NE+G+F M E GL EV NPS IFL SGS Sbjct: 239 AVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERTSGVSGS 298 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +++ EGTR +LVE+QAL+ + NPRR+A G++QN++A+L+AVL + GL + QD Sbjct: 299 TIVASMEGTRTVLVELQALISPTSFGNPRRMATGIDQNKVALLMAVLEKRSGLLLQTQDA 358 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++ GGVK+ E + DLA+ +A+ SS RD+P VV GEVGL GE+R V ++R++E Sbjct: 359 YLKAAGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLTGEVRRVSRIEQRVAE 418 Query: 419 AAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDAL 454 AAK GF RAI+P N+ P G+ + GV+ + +AL Sbjct: 419 AAKLGFTRAIIPKNNLGGWTYPPGITVIGVESVDEAL 455 >UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacterium KB13 RepID=B6BU53_9PROT Length = 454 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 221/461 (47%), Positives = 322/461 (69%), Gaps = 17/461 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE--VRLAASPMVARNERLSGYAGSA 58 MAK+ K + C +CG +WQGQC C WN + E V+ + S + N++ Sbjct: 1 MAKS-KTLYQCQQCGGHSSKWQGQCPHCFEWNCLEEQAVQTSTSRFKSLNKK-------- 51 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 + + ++++ + E+ R T E DRVLGGG+VPG LIGG+PG GKSTLL+Q L Sbjct: 52 --SNLININEVEINEIFRHPTNNSELDRVLGGGLVPGGVTLIGGDPGIGKSTLLIQALSS 109 Query: 119 LA----QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLM 174 L Q++ +Y+TGEES++QVAMRA RL L +L +LSE ++ I + E+E+P ++ Sbjct: 110 LTKNPNQEITAIYITGEESIEQVAMRARRLDLEVSDLLVLSEINLGNIITVIEKEKPSVV 169 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDSIQ + ++ S+PGSV+QVRE AA LTR AK V+++ VGHVTK+GS+AGP+VLE Sbjct: 170 VIDSIQTLFSEELNSAPGSVSQVRECAAQLTRVAKANDVSMIFVGHVTKEGSIAGPRVLE 229 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +G+++S +R +RS KNR+GAVNELG+++MTE+GL+E+ NPSAIFLS Sbjct: 230 HIVDTVLYFEGESNSSYRLVRSIKNRYGAVNELGIYSMTEKGLKEILNPSAIFLSETSFD 289 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 +GS V V+ EGTRP+L+E+QALVD S ++P+R++VGLE NR++++LAVL++H GL Sbjct: 290 QAGSVVTVMQEGTRPILIELQALVDESKQSSPKRLSVGLENNRISMILAVLNKHLGLSCH 349 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DVF+N VGGVK++E DLA+L+A+ SSL+++ + ++FGEVGL GE+RPV GQE Sbjct: 350 SHDVFLNAVGGVKISEPGVDLAVLIAIASSLQEKQVHSKTLIFGEVGLGGEVRPVVRGQE 409 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 RI EA K GF+R I+P N+PKK + +++ V + +AL+ Sbjct: 410 RIQEAIKLGFKRIILPRKNLPKKTIDDVELIPVDNIKNALN 450 >UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicutes RepID=RADA_BACSU Length = 458 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 214/457 (46%), Positives = 306/457 (66%), Gaps = 8/457 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C CG + P+W G+C C AWNT+ E + +P N R + V Sbjct: 1 MAKT-KSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPA---NRRAAFSHSVQTV 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++ I E PR T EF+RVLGGGVV GS +LIGG+PG GKSTLLLQ +L+ Sbjct: 57 QKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLS 116 Query: 121 QQMKT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + LY++GEES++Q +RA RLG+ +L++LSET +E I +E P +V+DSI Sbjct: 117 GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSI 176 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ +D+ S+PGSV+QVRE A L + AKT+G+ I +VGHVTK+GS+AGP++LEH +D Sbjct: 177 QTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ FR LR+ KNRFG+ NE+G+F M E+GL EV NPS IFL ++GSS Sbjct: 237 VLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSS 296 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + EGTRP+LVEIQAL+ + NPRR+A G++ NR+++L+AVL + GL + +QD + Sbjct: 297 ITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAY 356 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPL-PQDLVVFGEVGLAGEIRPVPSGQERISE 418 + V GGVK+ E + DLA+++++ SS RD P P D + GEVGL GE+R V ++R+ E Sbjct: 357 LKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFI-GEVGLTGEVRRVSRIEQRVKE 415 Query: 419 AAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDAL 454 AAK GF+R I+PAAN+ P+G+++ GV +++AL Sbjct: 416 AAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEAL 452 >UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteria RepID=RADA_BACHD Length = 457 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/458 (45%), Positives = 305/458 (66%), Gaps = 7/458 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG + +W G+C C +WN++ E +R+ SG AG+ Sbjct: 1 MAKK-KTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSG----AGI 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 AK Q ++ + E+ PR T KE +RVLGGG+VPGS +L+GG+PG GKSTLLLQ +LA Sbjct: 56 AKPQPITKVEREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLA 115 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + + LY++GEES++Q +R+ RLG+ +D+L +L+ET +E+I E P L++IDSI Sbjct: 116 DLKQRVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIGEVDPTLVIIDSI 175 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ ++ S+PGSVAQVRE A R AKT GVAI +VGHVTK G++AGPK+LEH +D Sbjct: 176 QTVYQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDS 235 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ +R LR+ KNRFG+ NE+G+F M E GL EV+NPS IFL +GS+ Sbjct: 236 VLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGST 295 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+ EGTRP+LVE+QAL+ + NPRR+A G++ NR+++L+AVL + G+ + +QD + Sbjct: 296 VVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAY 355 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VNV GGV++ E + DL + +++ SS R++ VV GE+GL GE+R V +R++EA Sbjct: 356 VNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTGEVRRVSRIDQRVNEA 415 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALSV 456 AK GF+R I+P N+ P +++ GV + DAL V Sbjct: 416 AKLGFKRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEV 453 >UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae RepID=D2RJM6_ACIFE Length = 457 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/457 (45%), Positives = 295/457 (64%), Gaps = 7/457 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + +VC CG P+W G+C C W+T+ E A +P R Y Sbjct: 1 MAKT-QTHYVCQNCGYSTPKWLGKCPECGRWDTLVEETAAPAPSRQR----PSYLAVTEA 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + ++ R +TG EFDRVLGGG+VPGS IL+GG PG GKST+ L K A Sbjct: 56 PTPKTLKQVDRVKVQRMTTGIHEFDRVLGGGIVPGSLILLGGAPGIGKSTITLDVSMKAA 115 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + + LYV+GEES Q AMRA RLG TD L +++ T + I + A + +P+L+VIDSI Sbjct: 116 ARGARVLYVSGEESEAQTAMRAERLGQATDALQIMTATELGTILVQARQVKPRLLVIDSI 175 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q M+ +++S+ GSV QVRE A L FAK G+AI+++GHVTK+G++AGP++LEH +D Sbjct: 176 QTMYNQELESAAGSVGQVRECTAKLLTFAKETGIAIIIIGHVTKEGNIAGPRLLEHMVDV 235 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD +R LR+ KNRFG+ +E G+F+M E+GLREV+NPS +FL +E SGS Sbjct: 236 VLQFEGDRSYTYRVLRALKNRFGSTSECGIFSMEEEGLREVANPSGLFLEAREEAVSGSV 295 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + EG RP+L EIQALV H+ PRR VG++ NR+ +LLAVL + G+ DQD + Sbjct: 296 ITAAMEGNRPILTEIQALVSHTPFGLPRRTVVGVDFNRVNMLLAVLEKRCGMNFGDQDAY 355 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 V VGG+KV E +ADLA+L A+VSS R+RP+P ++ GEVGL GE+R V RI EA Sbjct: 356 VCAVGGMKVKEPAADLAILGALVSSYRNRPVPMGVLAMGEVGLTGELRRVGLTDRRIKEA 415 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 A+ GF+R IVP + P+ K P+G+ + + + +A++ Sbjct: 416 AQLGFKRFIVPKGSFPQGKEPKGVTVIQARTVEEAIA 452 >UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZI7_UNCTG Length = 455 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/454 (44%), Positives = 296/454 (65%), Gaps = 7/454 (1%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNER-LSGYAGSAGVA 61 K K F+C CG + +W G+C +C AWN+ E + + R L+G++ + Sbjct: 2 KKQKTRFLCQHCGYESVQWLGKCPSCGAWNSFAEEKFSLPVRTGSLSRQLTGFS-----S 56 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ 121 +V KL DIS+++ R+ T KEFD ++GGG+VPGS IL+GG PG GKSTL+L L+ Sbjct: 57 EVLKLKDISVKDFSRYQTAIKEFDNMIGGGIVPGSLILLGGAPGIGKSTLMLHISDSLSD 116 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 + LY++GEESL QV RA RL + DN+ + SET+++ I + PK +VIDSIQ Sbjct: 117 RGTVLYISGEESLSQVKARAERLKVKKDNIFLASETNLKNIIDAVNKIDPKFLVIDSIQT 176 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 + D+ S+PG+V QVRETAA L R AK++ +A+ ++GHVTK+G LAGP+VLEH +D + Sbjct: 177 TYHPDLSSAPGTVGQVRETAAELLRVAKSKSIAVFLLGHVTKEGDLAGPRVLEHIVDTVL 236 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 + + +R LR++KNRFG +E+G+F M GL EVSNPS IFL +G++V Sbjct: 237 YFENERRQTYRILRAYKNRFGPTSEIGIFEMDSSGLSEVSNPSLIFLGERVAEAAGNTVT 296 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 V EGTRP+L+E+QAL + PRR+ G + NR+ IL+AVL + L + QDVF+N Sbjct: 297 VAMEGTRPILLEVQALTARTTFGIPRRMVSGYDANRITILIAVLEKRLNLPLEMQDVFIN 356 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 + GGVK+ ETSADLA+ A++S+ P+D++VFGEVGLAGE+R V ER+SEA K Sbjct: 357 IAGGVKIKETSADLAVACAIMSANSGFICPKDIIVFGEVGLAGEVRSVTFTAERLSEAEK 416 Query: 422 HGFRRAIVPAANVPKKAPEG-MQIFGVKKLSDAL 454 GF++AI+P +N+ + +G + + G + L A+ Sbjct: 417 LGFKKAIIPKSNLKNLSYKGKIDVLGTETLRSAV 450 >UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJQ7_BDEBA Length = 463 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 220/467 (47%), Positives = 307/467 (65%), Gaps = 18/467 (3%) Query: 1 MAKAP-KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARN------ERLSG 53 MAK+ K + C CGA PRW+G+CS C AWN+ E L + R ER S Sbjct: 1 MAKSKTKTIYTCQNCGAQRPRWEGKCSDCGAWNSYVE-ELQMPEVKTRGWSTGSGERES- 58 Query: 54 YAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 GS VA Q+L ++ L+ RF T F+E +RVLGGG+ GS +L+GG+PG GKSTLLL Sbjct: 59 -TGSKPVALDQRLEEVKLD---RFDTSFEELNRVLGGGLAKGSFVLLGGSPGIGKSTLLL 114 Query: 114 QTLCKLAQ-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPK 172 Q LA + K LY++GEES+ Q RAHRLG+ + + + E+++ + +A ++P Sbjct: 115 QMAGGLANNKHKVLYISGEESVSQTGSRAHRLGIRSPLIEVGCESNLTAVMEMARFKKPD 174 Query: 173 LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 ++V+DSIQ M + D+Q++PGSV+QVRE A +L AK G+ ++++GHVTKDG++AGPKV Sbjct: 175 VLVVDSIQTMFLPDLQAAPGSVSQVRECAGHLMGLAKHDGITVILIGHVTKDGNIAGPKV 234 Query: 233 LEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL-SRG 291 LEH +DC + DGD FR LRS KNRFGA +ELGVF M +GL EVSNPS +FL RG Sbjct: 235 LEHMVDCVLSFDGDISYNFRLLRSLKNRFGAAHELGVFQMNSKGLEEVSNPSELFLEERG 294 Query: 292 DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGL 351 D++ GS+V EGTRPLL E+QAL S MA PRR A+G++ NRL +L AVL RH + Sbjct: 295 DQLI-GSAVFASMEGTRPLLCEVQALTLSSPMAMPRRTALGIDINRLHLLTAVLDRHLDV 353 Query: 352 QMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 ++A D+F+NVVGG+K+ E ++DLA+ A++S+ R L FGE+GL GE+R V Sbjct: 354 RLAHNDIFINVVGGLKLVEPASDLAVAAAILSTEHRRDLDAKTCYFGEIGLTGEVRGVSF 413 Query: 412 GQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 ++RI EA K GF+ ++P +N K+ E +++ KK+S +V D Sbjct: 414 VEQRIKEADKLGFKHFVIPFSN--KRHLEDVKLSKDKKISFVKNVHD 458 >UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUE9_SYNWW Length = 451 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/450 (44%), Positives = 293/450 (65%), Gaps = 12/450 (2%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 FVC+ECG + P+W G+C C AWN++ E ++ P+ ER++ L+ Sbjct: 8 FVCHECGYETPKWLGKCPGCSAWNSLLEESISNKPLRRTAERVAAIP----------LNQ 57 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK-TLY 127 +S E+ PRFS+G EFDRVLGGG+VPGS IL+GG+PG GKSTLLLQ +A K LY Sbjct: 58 LSAEDSPRFSSGLSEFDRVLGGGIVPGSLILLGGDPGIGKSTLLLQVAGLIAAAGKRILY 117 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 ++GEESLQQ+ +RA RLG+ D + +L+E I+ + + P L++IDSIQ ++ + + Sbjct: 118 LSGEESLQQIRLRASRLGINNDTIFLLNEQDIDLLHEYINDLDPDLIIIDSIQTVYSSKL 177 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 S PGSV+Q+RE+ A + + AK A+ +VGHVTKDGSLAGPKVLEH +D V +G+ Sbjct: 178 SSIPGSVSQLRESTAAVMQIAKKMDKAVFLVGHVTKDGSLAGPKVLEHIVDVVVYFEGEK 237 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 + FR LR+ KNRFGA +E+ + M+ QGL EV +PS +FLS G +++SG++++ EG+ Sbjct: 238 NFSFRLLRAAKNRFGATDEIALLEMSGQGLVEVPDPSYVFLSPGRDISSGTAIVASMEGS 297 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 RPLL+EIQALV PRR+ G++QNRL++++AVL + G ++ DV++ V GGV Sbjct: 298 RPLLIEIQALVSSLGAGYPRRMVSGIDQNRLSLIIAVLEKRRGYTLSACDVYLKVSGGVF 357 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 + + S DL + A++SS ++PL D V GE+ L+G+IRPV R+ E + G++R Sbjct: 358 LKDPSVDLGIAAAVLSSYLEKPLAMDTVFIGEISLSGQIRPVSFLDLRLREIDRMGYKRV 417 Query: 428 IVPAA-NVPKKAPEGMQIFGVKKLSDALSV 456 IVP + K+ M+I VK L + + Sbjct: 418 IVPTSPGRLAKSSHNMEILEVKSLDHFIDI 447 >UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34D2F Length = 485 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/485 (42%), Positives = 296/485 (61%), Gaps = 28/485 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNER---------- 50 MAKA AF C+ECG + +W GQC AC AWNT+ E +A + +R Sbjct: 1 MAKARATAFFCSECGYESAKWMGQCPACRAWNTMVEEPVAFQTAKSAGKRGLGAAAGILG 60 Query: 51 -------------LSGYAGSA---GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP 94 SG AG+A G + LS+I L R TGF E +RVLGGG+V Sbjct: 61 REGISASGKSPAGRSGLAGTASGLGAVCPKSLSEIELGREERTDTGFGELNRVLGGGIVK 120 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 GS +L+GG+PG GKSTLLLQ LA K LY++GEESL+Q+ +RA R+G +D+L Sbjct: 121 GSLVLVGGDPGIGKSTLLLQVCRNLAAGGQKVLYISGEESLKQIKIRASRIGEMSDSLCF 180 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 L ET++E I + P ++IDSIQ M++ ++ S+PGSV+QVRE L + AK G+ Sbjct: 181 LCETNLEMIQEVVRRTAPDTVIIDSIQTMYLEEITSAPGSVSQVRECTNVLMQIAKGLGI 240 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 + +VGHVTK+G +AGP+VLEH +D + +GD + +R LR KNRFG+ NE+GVF M Sbjct: 241 TVFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMR 300 Query: 274 EQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL 333 E+GL EV NPS L SG+ + EGTRPL++E+QALV S PRR A G Sbjct: 301 EEGLVEVKNPSEFMLEGRPAGASGAVAACLVEGTRPLMLEVQALVTRSNFGMPRRTAAGT 360 Query: 334 EQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD 393 + NR+ +L+AVL + + D +VN+ GG+K+ E + DLA+++A++SS +DR + + Sbjct: 361 DYNRVNLLMAVLEKRCRYDLGQMDAYVNIAGGLKMNEPALDLAIVMALISSYKDRAVDEK 420 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSD 452 VVFGEVGL+GE+R V ++R++EA K GF I+P + K K +++ GV + + Sbjct: 421 TVVFGEVGLSGEVRSVSMAEQRVNEAVKLGFEACILPRICLEKMKRRSDIRLIGVSSVKE 480 Query: 453 ALSVF 457 A+++ Sbjct: 481 AVAIL 485 >UniRef50_B5AXB1 Protease (Fragment) n=171 Tax=cellular organisms RepID=B5AXB1_ECOLX Length = 191 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 159 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV Sbjct: 1 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 60 Query: 219 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR Sbjct: 61 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 120 Query: 279 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 338 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL Sbjct: 121 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 180 Query: 339 AILLAVLHRHG 349 AILLAVLHRHG Sbjct: 181 AILLAVLHRHG 191 >UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteria RepID=RADA_LISMO Length = 457 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/457 (43%), Positives = 296/457 (64%), Gaps = 9/457 (1%) Query: 1 MAKAPKRA-FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MAKA + FVC CG + +W G+C C+ WN + E A P ++ R S + + Sbjct: 1 MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVE---ALEP--SKKSR-SAFNHTGE 54 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 +K ++ I+ E R T E +RVLGGGVVPGS +L+GG+PG GKSTLLLQ +L Sbjct: 55 PSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQL 114 Query: 120 A-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 K LY++GEES++Q +RA RL + DNL + +ET++E + + +P +VIDS Sbjct: 115 TLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFVKPDFVVIDS 174 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ +DV S+ GSV+QVRE A L R AK + +AI +VGHVTK+G++AGP++LEH +D Sbjct: 175 IQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVD 234 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +G+ +R LR+ KNRFG+ NE+G+F M + GL EV+NPS +FL E SGS Sbjct: 235 TVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V+ EGTRP+LVEIQALV +M N +R+A G++ N++++++AVL + GL + +QD Sbjct: 295 TVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDA 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++ GGVK+ E + DLA+ +++ SS RD+P GE+GL GEIR V ++R+ E Sbjct: 355 YLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQE 414 Query: 419 AAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDAL 454 AAK GF+R +P N K P+ +Q+ GV+ + +AL Sbjct: 415 AAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEAL 451 >UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C1A917_GEMAT Length = 465 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/462 (45%), Positives = 294/462 (63%), Gaps = 14/462 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + + C +CGA++P+W G+C +C AWNT+ E +A + ++R + A Sbjct: 1 MAKT-RTVYRCTDCGAEFPKWAGRCESCSAWNTLVEEVVAPTTT---SKRTAARAAGGVA 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL- 119 + L ++ + PR+ TG EFD VLGGG+VPGS +L+GG PG GKSTLLLQ +L Sbjct: 57 GRTVTLGSVTSSDTPRWRTGLDEFDFVLGGGIVPGSMVLVGGEPGIGKSTLLLQVAARLE 116 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQP-------K 172 A TLYV+GEES QV +RA RL +++L+ETS+E I +A QP + Sbjct: 117 AAGQATLYVSGEESALQVRLRAERLAEDASAVSLLTETSLETI--LATAAQPTGDGRPVR 174 Query: 173 LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 +++DSIQ +H ++ +PG+V QVRE AA L RFAK G + ++GHVTK G +AGPK Sbjct: 175 ALIVDSIQTVHTELLEGAPGNVGQVRECAARLMRFAKDSGTTVFVIGHVTKGGGIAGPKT 234 Query: 233 LEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD 292 LEH +D + +GD+ R LR+ KNRFG+V+E+GVF M GL V NPSA+F+ Sbjct: 235 LEHIVDTVLYFEGDSTLDHRVLRATKNRFGSVDEIGVFRMVSTGLIPVDNPSALFVGDRR 294 Query: 293 EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQ 352 EV SGS+V + EGTRP+LVE+QAL + P+RVA G++ RLA+LLAVL + GG Sbjct: 295 EVASGSAVCALMEGTRPVLVEVQALAAKAGFGTPQRVANGIDARRLALLLAVLDKRGGFS 354 Query: 353 MADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 A DVF NVVGG++V E S DLA++ A+ SS+ D+PLP V GE+GL GE+RPV Sbjct: 355 CAQLDVFCNVVGGMRVQEPSVDLAVVAALASSVVDKPLPSHAVFLGELGLGGEVRPVSQA 414 Query: 413 QERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 + R++EAAK G A + +P++ P + + GV+ L D L Sbjct: 415 ERRLAEAAKLGMTTAFMSDRAIPRRVPGDITVIGVRTLVDVL 456 >UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4A3_NATTJ Length = 456 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/450 (44%), Positives = 289/450 (64%), Gaps = 4/450 (0%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 ++C +CG +W G+C AC WNT + P +++ G + S ++V LS+ Sbjct: 8 YMCLDCGHTELKWLGKCPACSNWNTFQ--KKYQQPSDNKHKSNIGSSESEQSSQVITLSE 65 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQQMKTLY 127 I LE+ PR ST E DRVLGGG+VPGS +L GG+PG GKSTL+LQ L TLY Sbjct: 66 IDLEKEPRMSTSIDELDRVLGGGIVPGSVVLFGGDPGIGKSTLMLQASHNLDTLNFSTLY 125 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 V+GEESL Q+ +R RLGL +++L S T + ++ E++P++++IDSIQ ++ ++ Sbjct: 126 VSGEESLSQLKLRCERLGLNSESLLFASITDLRELENRLNEQKPQILIIDSIQSLYTPEI 185 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 ++ PGS++QV+ AA L AK +A ++VGHVTK G +AGPKVLEH +D + +GD Sbjct: 186 EAPPGSLSQVKHCAAVLHSVAKENEIACLIVGHVTKAGQIAGPKVLEHIVDTVLYFEGDH 245 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 +R LRS KNRFG + E+GVF M + GL+E++NPS +FL + + T GS+++ EGT Sbjct: 246 HQDYRILRSIKNRFGPI-EIGVFEMRQTGLQEITNPSKLFLRKRPDYTVGSAILPSLEGT 304 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 R LVEIQALV S + PRRV G++ NR A++ AVL + GL + D+F+NVVGG K Sbjct: 305 RAFLVEIQALVSTSQLGTPRRVVTGIDSNRAALITAVLEKKSGLHLVGDDIFINVVGGAK 364 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 V E +ADLA+ L+++SS +++ P DLVV GE+GL GEIR ++R+ EA + GF++A Sbjct: 365 VAEPAADLAVALSLISSFKEQGFPGDLVVMGEIGLTGEIRSCNQPEKRLLEAERMGFKKA 424 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 I+P A ++I+ V L D L + Sbjct: 425 ILPEACRLNHHQGNIEIYPVSYLKDVLEIL 454 >UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobacteria RepID=Q215U8_RHOPB Length = 503 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 213/435 (48%), Positives = 293/435 (67%), Gaps = 13/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL---AASPMVARNERLSGYAGS 57 MAKA +FVC CGA Y RWQG+C +C WNT+ E L A+ P R++R G A Sbjct: 17 MAKA-TLSFVCQNCGAAYNRWQGKCESCGEWNTLAEEDLTGAASMPASIRSKR-RGRA-- 72 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 K++ L+ S E+ PR S+G E DRV GGG V GS +L+GG+PG GKSTLL Q Sbjct: 73 ---FKLESLTGTS-EQAPRLSSGLGELDRVTGGGFVRGSVLLVGGDPGIGKSTLLTQATS 128 Query: 118 KLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQI-CLIAEEEQPKLMV 175 +A++ + +Y++GEE++ QV +RA RLGL + + +ETS+E I ++E P+L+V Sbjct: 129 LMAREGHRIVYISGEEAVAQVRLRATRLGLADAAVQLAAETSVEDIITTLSEGAVPRLIV 188 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 IDSIQ M V+S+PG+V QVR +A L RFAK G AI++VGHVTKDG +AGP+V+EH Sbjct: 189 IDSIQTMWTDTVESAPGTVTQVRASAQALIRFAKKSGAAIILVGHVTKDGQIAGPRVVEH 248 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +G+ +FR LR+ KNRFG +E+GVF MT GLREV+NPS +FLS D + Sbjct: 249 MVDAVLSFEGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVANPSELFLSERDLGS 308 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 G++V EGTRP+LVE+QALV + + PRR VG + +RL+++LAVL H G++++ Sbjct: 309 PGTAVFAGMEGTRPVLVELQALVVPTTLGTPRRAVVGWDSSRLSMVLAVLEAHCGVKLSG 368 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 DV+ NV GG+++ E +ADLA A+VSSL + PLP D V FGE+ L+G +RPV R Sbjct: 369 YDVYFNVAGGLRINEPAADLAAAAALVSSLANAPLPTDAVYFGEISLSGAVRPVAQSSAR 428 Query: 416 ISEAAKHGFRRAIVP 430 + EAAK GF RAI+P Sbjct: 429 LKEAAKLGFARAILP 443 >UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae RepID=A8MLV2_ALKOO Length = 456 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/459 (44%), Positives = 288/459 (62%), Gaps = 9/459 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K FVC ECG + +W G+C C+ WNT+ E L + R+ + Sbjct: 1 MAKI-KSKFVCQECGYESVKWLGKCPGCNNWNTMEEEMLESKKDFKRSPTI------VSQ 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +K Q + ++ R+ T E +RVLGGG+V GS LI G PG GKSTL+LQ +A Sbjct: 54 SKPQPIKEVKSGAYERYDTQINELNRVLGGGLVKGSLTLITGEPGIGKSTLILQASSTIA 113 Query: 121 QQM-KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + KTLYV+GEES +Q+ MR RL +D+L ++SET+++ I EE P ++IDSI Sbjct: 114 NRYGKTLYVSGEESEEQIKMRGERLNSLSDDLYIVSETNVDVIEKYIEEYAPVFIIIDSI 173 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + D+ S+PGSV+QV+E A L R K++ + + +V HVTK G LAGP+VLEH +D Sbjct: 174 QTLFKEDLSSAPGSVSQVKECANNLMRIGKSKNIPMFIVAHVTKQGELAGPRVLEHMVDT 233 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ FR LR+ KNRFG +E+GVF M E+GL EVSNPSA+FL G+ Sbjct: 234 VLHFEGERTQEFRILRALKNRFGTTSEIGVFEMREEGLVEVSNPSAMFLESLSTEAEGAI 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+V EGTRPLLVEIQALV + PRR AVG++ NRL +++AVL + GL + +QD++ Sbjct: 294 VVVTVEGTRPLLVEIQALVAPTNAGFPRRAAVGIDINRLNLIIAVLEKKIGLPLMNQDIY 353 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPL-PQDLVVFGEVGLAGEIRPVPSGQERISE 418 VNVVGG+K+ TSADL + +A+ SS+R P+ + +VV GE+ L GE+RP+ ++ + E Sbjct: 354 VNVVGGLKLEGTSADLGVAMAIYSSMRGIPIASRAMVVMGEISLTGELRPISHLEKMLKE 413 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A K GF R+++P N K M+ GV L DAL + Sbjct: 414 AEKMGFTRSVIPQKNKFKFDGIHMKCKGVDTLKDALEML 452 >UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri DSM 18205 RepID=D1P982_9BACT Length = 494 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/468 (44%), Positives = 290/468 (61%), Gaps = 37/468 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP--MVARNERLSGYAGSA 58 MAK K AFVC+ CG + +W G+C +C WNT E+R+AA A+N ++ G A Sbjct: 1 MAK-DKIAFVCSNCGQESAKWMGKCPSCGQWNTFKEIRIAADSGSQAAKNAVMTMRHGGA 59 Query: 59 GV----------AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGK 108 A KL DIS + PR +E +RVLGGG+VPGS L+GG PG GK Sbjct: 60 ATMFGGQHSEHDAAPMKLRDISAIDEPRIDMRDEELNRVLGGGMVPGSITLLGGEPGIGK 119 Query: 109 STLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLG--------------LPT------ 148 STL LQT+ + + + LYV+GEES Q+ +RA RL L T Sbjct: 120 STLTLQTILNMTDR-RILYVSGEESAHQIKLRADRLAKGQAMLREGSSADTLKTASLSSE 178 Query: 149 ---DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 D++ +L ET +E+I +E P+L+VIDSIQ + +V SSPGSV+QVRE AA L Sbjct: 179 GAFDHITVLCETQLEKIFSHIQEVAPQLIVIDSIQTIAAEEVDSSPGSVSQVRECAASLL 238 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 RFAKT G+ ++++GH+ K+G+LAGPK+LEH +D + +GD +R LRS KNRFG+ + Sbjct: 239 RFAKTSGIPVILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTS 298 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMAN 325 ELG++ M + GLR+VSNPS + L+ + SG ++ EG RP LVE QALV + Sbjct: 299 ELGIYEMMQGGLRQVSNPSELLLTEDHDGLSGVAISAAIEGVRPFLVETQALVSTAAYGT 358 Query: 326 PRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSL 385 P+R A G +Q RL +LLAVL + G ++ +DVF+N+ GG++VT+ + DL++L A++SS Sbjct: 359 PQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDPAMDLSVLAAVLSSN 418 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN 433 D P+ Q + GEVGL+GE+RPV ++RI+EA K GF+ I+P N Sbjct: 419 VDTPIEQGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFQHIIIPKYN 466 >UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QF93_9SPHI Length = 461 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/436 (44%), Positives = 276/436 (63%), Gaps = 4/436 (0%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE--VRLAASPMVARNERLSGYAGSA 58 MAK K F C CG +W G+C AC WNTI E V+ SG G Sbjct: 1 MAKL-KTTFFCQSCGNQSAKWMGRCPACGEWNTIVEEVVQKDEPEKGGWRSPSSGPGGLK 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 AK + + I+ EE PR +T E +RVLGGG+V GS +LIGG PG GKSTLLLQ Sbjct: 60 IAAKPKAIHAINYEEQPRVTTTDGELNRVLGGGIVAGSLVLIGGEPGIGKSTLLLQIALS 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 LA ++ LYV+GEES QQ+ MRA RL PT + ++++ETS + I + E +P++++IDS Sbjct: 120 LAG-LRVLYVSGEESEQQIKMRAERLDAPTSDCHVMTETSTQNIFRVVEHFEPEVLIIDS 178 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ M + V+S GSV+QVRE A ++AK GV + M+GH+TK+GSLAGPKVLEH +D Sbjct: 179 IQTMQSSLVESGAGSVSQVRECTAEFMKYAKESGVPVFMIGHITKEGSLAGPKVLEHMVD 238 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +GD + +R LR+ KNRFG+ +ELG++ M GLR+V+NPS I +S+ DE SG Sbjct: 239 TVLTFEGDRHTTYRILRTTKNRFGSTDELGIYEMLGSGLRQVTNPSEILISQRDEALSGV 298 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ + EG RPL++E QALV + P+R + G + RL +LLAVL + GG ++ QDV Sbjct: 299 TIGSMLEGNRPLMIESQALVSVATYGTPQRSSTGFDAKRLNMLLAVLEKRGGFRLGQQDV 358 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 F+N+ GG++V + + DLA+ A+VSS D +P + E+GL GE+R V + RI+E Sbjct: 359 FLNIAGGLRVEDPAIDLAVCAAIVSSYEDIAIPPSVAFAAEIGLGGEVRAVSRIESRIAE 418 Query: 419 AAKHGFRRAIVPAANV 434 A K GF++ + N+ Sbjct: 419 AEKLGFKKMFISKYNL 434 >UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=B0K5E6_THEPX Length = 457 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/463 (40%), Positives = 288/463 (62%), Gaps = 18/463 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ + FVC ECG + +W G+C C +WN+ E + +S + + Sbjct: 1 MAKSTTK-FVCRECGFESSKWMGRCPNCDSWNSFEEEAIESS---------KNFRKTKDR 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +++ L D++ E R TG +EFDRVLGGG+V GS +LIGG+PG GKSTLLLQ ++ Sbjct: 51 SQIYLLEDVTFSEEERIRTGIEEFDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVAGNIS 110 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LYV+GEES+QQ+ +RA R+ + +L ET+IE+I +E +P ++IDSIQ Sbjct: 111 DSRKVLYVSGEESVQQIKLRADRILKEKQRIYLLCETNIEEIERKIDENKPDFVIIDSIQ 170 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ + ++ PGSV+Q+R+ L AK + ++I ++GHVTK+G++AGPKVLEH +D Sbjct: 171 TIYTEESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVTKEGAIAGPKVLEHMVDTV 230 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD FR LR+ KNRFGA +E+GVF M E GL E+SNPS LS + SG++V Sbjct: 231 LYFEGDRTQSFRILRAVKNRFGATHEIGVFDMEEDGLCEISNPSEFILSNKPKDVSGTAV 290 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + +GTRP+L+E+Q+L+ + PRR+A G + NR +LLAV+ + G+ ++ D +V Sbjct: 291 VSSIQGTRPILMEVQSLICKTTFGVPRRMATGFDYNRFILLLAVIEKRLGINLSQFDAYV 350 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NV GG+K+ E +ADL ++ + +S + P+P+D+ GEVGL GE+R V + +RI EA Sbjct: 351 NVAGGMKIQEPAADLGIIASSLSGYFNIPIPEDVCFIGEVGLTGEVRGVSNIDKRIGEAQ 410 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFG---VKKLSDALSVFDDL 460 K GF + +P + ++ FG V K+ D + D L Sbjct: 411 KMGFSQVFIPEMKTKE-----IKKFGNIKVTKIKDIKDIMDFL 448 >UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=B7KLK4_CYAP7 Length = 520 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/492 (42%), Positives = 309/492 (62%), Gaps = 42/492 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS-PMVAR-----NERLSGY 54 MAK+ K ++CN CG++ P+W G+C +C + ++ E ++ + P++AR N R +G Sbjct: 1 MAKS-KTIYICNACGSESPQWFGKCPSCGVYGSLEEQIISQNNPLIARGGWQSNSRQNGK 59 Query: 55 AGSAGVAKVQ-KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 A ++ + S I+ EE RF++G+ E DRVLGGG+VPGS +LIGG+PG GKSTLLL Sbjct: 60 ASGPAQPRISLRFSQITQEEQARFASGYGELDRVLGGGIVPGSLVLIGGDPGIGKSTLLL 119 Query: 114 QTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGL-------------------------- 146 Q +L+Q++ + LYV+ EES QQV +RA RLG+ Sbjct: 120 QVANRLSQRLPRILYVSAEESGQQVKLRAQRLGVGVVETPPEESENGKGKKRNKSTQKDL 179 Query: 147 --PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 +NL +L ET +E+I E +P+ VIDSIQ ++ A + S+PGSVAQVRE + L Sbjct: 180 NNADNNLYVLPETDLEEILRELESLKPQAAVIDSIQTLYFAALTSAPGSVAQVRECTSAL 239 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAV 264 + AK + + +VGHVTK+G++AGP+VLEH +D + +GD + R LRS KNRFGA Sbjct: 240 MQVAKRENITLFIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGAT 299 Query: 265 NELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMA 324 +E+G+F M ++GL EV NPS +FL DE+ G++ +V EGTRP++VE+QALV + + Sbjct: 300 HEIGIFEMVDKGLVEVENPSELFLGNRDELIPGTATIVACEGTRPIVVELQALVSPTSYS 359 Query: 325 NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSS 384 +PRR G++ NRL +LAVL + G+ ++ D +V GG+ V E +ADL + +A+V+S Sbjct: 360 SPRRSTTGVDYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLGMAIAVVAS 419 Query: 385 LRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--GM 442 RDR + ++ GEVGL G++R V + R+ EA K GF+RAIVP + PE G+ Sbjct: 420 FRDRVVDPRTILIGEVGLGGQVRLVSQMELRLKEATKLGFKRAIVPKG---QSYPEDIGL 476 Query: 443 QIFGVKKLSDAL 454 ++ V K+ DA+ Sbjct: 477 EVVAVGKVIDAI 488 >UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKL6_FIBSS Length = 463 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/458 (43%), Positives = 289/458 (63%), Gaps = 16/458 (3%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG------VAK 62 ++C ECG P+W G+C C AW+++ E + ER++ AG G V K Sbjct: 13 YLCTECGNTTPKWAGKCPFCGAWSSLKEHVI---------ERITDGAGRTGRGLGGPVHK 63 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQ 121 V L D++ E+ R ST EFDRVLGGG PGS +LIGG+PG GKSTL+L TL + A Sbjct: 64 VVLLKDVAAEDTRRLSTANSEFDRVLGGGFAPGSLVLIGGDPGIGKSTLVLTTLATMNAA 123 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 +K LYV+GEES QV +R+ RL + ++ +L ET++E+I A+E +P+++VIDSIQ Sbjct: 124 GVKALYVSGEESACQVKLRSERLNVSGSDMMLLCETNLEKILEQAKEVKPQVLVIDSIQT 183 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 ++ +D+ +PG Q+RE L FAK G +++GHVTKDG +AGP++LEH +D V Sbjct: 184 VYKSDLSGTPGCATQLRECTLDLMVFAKNSGCITILIGHVTKDGQIAGPRILEHMVDTVV 243 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 +GD + ++R LR+ KNRFGA +E+GVF MT GL V NPS +FL G T GS+V Sbjct: 244 YFEGDRNHQYRLLRTIKNRFGATDEIGVFEMTSHGLNPVLNPSKVFLQEGVPPTPGSAVC 303 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 EG+R LL E QALV+ + A P+RVA G++ RL I+LA+L + GG+ + DVF + Sbjct: 304 CTMEGSRALLFETQALVNQTNFAVPQRVAAGIDPKRLTIILALLEKFGGVTIGASDVFAS 363 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 + GG+KV + S+DLAL LA+ S+ PL + + GE+GL+GE+R V +R+ EA++ Sbjct: 364 IAGGMKVNDASSDLALALAVASNHLGIPLSRQTIAIGELGLSGEVRGVSLLDQRLKEASR 423 Query: 422 HGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 G A+VPA+ + M++ V LS+A+S D Sbjct: 424 LGMTEAVVPASCKLSENMGSMKVVRVHSLSEAISWLMD 461 >UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE34_9FIRM Length = 456 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/437 (44%), Positives = 283/437 (64%), Gaps = 8/437 (1%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 +VC +CG +W G+C C AW+++ E +P+ + Y +A + L + Sbjct: 10 YVCQKCGYASVKWLGKCPECGAWDSLVEE--VDAPV---DRHRPSYLKTAEHVAPKTLRE 64 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLY 127 + ++ R TG EFDRVLGGG+VPGS IL+GG PG GKST+ L K A + + LY Sbjct: 65 VDKVKVNRIPTGITEFDRVLGGGIVPGSLILLGGAPGIGKSTITLDVSMKAANRGIPVLY 124 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 V+GEES Q AMRA RLG +D L +++ T + I + A ++ PKL+VIDSIQ M+ +++ Sbjct: 125 VSGEESEAQTAMRAERLGTASDALKVMTATELGTILVEARKDAPKLLVIDSIQTMYNSEL 184 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 +++ GSV QVRE A L FAK +AI+++GHVTK+G++AGP++LEH +D + +GD Sbjct: 185 ETAAGSVGQVRECTAKLLNFAKESNIAIIIIGHVTKEGNIAGPRLLEHMVDVVLQFEGDR 244 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 +R LR+ KNRFG+ +E G+F+M +GL+EVSNPS +FL ++ GS + EG Sbjct: 245 SYTYRVLRALKNRFGSTSECGIFSMEAEGLQEVSNPSGLFLETKEKPVPGSVITATIEGN 304 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 RP+L EIQAL H+ PRR AVG++ NR+ +L+A+L + G+ DQD +V+ VGG+K Sbjct: 305 RPILAEIQALAAHTPFGMPRRTAVGVDYNRVNMLIAILEKRMGMNFGDQDAYVSAVGGMK 364 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 +TE + DLA++ A+VSS R+ P+ ++ GEVGL GE+R V RI EAA+ GF+R Sbjct: 365 ITEPAVDLAIVGALVSSYRNVPVGAGILCLGEVGLTGELRRVGLTDRRIKEAAQLGFKRF 424 Query: 428 IVPAANV--PKKAPEGM 442 IVP + KKAP G+ Sbjct: 425 IVPRGSFMNGKKAPAGV 441 >UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=Q31N87_SYNE7 Length = 478 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/471 (45%), Positives = 296/471 (62%), Gaps = 20/471 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS---------PMVARNERL 51 MA++ + +VC CG PR+ G+C AC +WN++ E +A + P R +RL Sbjct: 1 MARS-RSEYVCQNCGHRAPRYVGRCPACESWNSLVEEAIAPTAKTAIATVLPSRQRRDRL 59 Query: 52 SGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 + A A Q LS I+ R ++G EFDRVLGGG+VPGS +LIGG+PG GKSTL Sbjct: 60 AEAPPQAVAA--QPLSAIADVSQQRIASGSGEFDRVLGGGLVPGSLVLIGGDPGIGKSTL 117 Query: 112 LLQTLCKLAQQMKTLYVTGEESLQQVAMR-----AHRLGLPTDN-LNMLSETSIEQICLI 165 LLQT L+QQ LYV EES QQV +R AHR D +L E ++ I Sbjct: 118 LLQTATALSQQQPILYVCAEESGQQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAE 177 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 E +P + +IDSIQ ++ + S+PGSVAQVRE A L R AK + +++VGHVTKDG Sbjct: 178 LETLRPPVAIIDSIQALYSPALGSAPGSVAQVRECTAALMRVAKQLTITLLIVGHVTKDG 237 Query: 226 SLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 ++AGPKVLEH +D + +GD + R LRS KNRFGA ELG+F M ++GL EV NPSA Sbjct: 238 AIAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGASQELGIFEMVDRGLEEVGNPSA 297 Query: 286 IFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 +FL D+ TSG++ +V EGTRPLLVE+QALV S ++PRR G+E NRL +LAVL Sbjct: 298 LFLGSRDQATSGTATIVACEGTRPLLVELQALVSPSSYSSPRRAGTGIEYNRLLQILAVL 357 Query: 346 HRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGE 405 + GL ++ D +V GG+ V E +ADL + +A+V+S RDR L D V+ GE+GL G+ Sbjct: 358 EKRLGLPLSKFDAYVASAGGLNVAEPAADLGIAIALVASFRDRCLRPDTVLIGEIGLGGQ 417 Query: 406 IRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 +RPV + R+ EAAK GF+RA++P ++ +++ V +L DA+ + Sbjct: 418 VRPVSQVELRLKEAAKLGFQRALLPKGQ--ERCESDLELVPVSRLVDAIGL 466 >UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquificales RepID=RADA_AQUAE Length = 444 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/452 (43%), Positives = 286/452 (63%), Gaps = 13/452 (2%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K A+VC ECG +W G+C +C WNT+ E S + + E + V Sbjct: 5 KTAYVCQECGYKSVKWLGKCPSCGEWNTLVEEFEPQSFSLVKKEP----------SLVLP 54 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 ++D EE R +TGF+ D LGGG+V G ILI G PG GKSTLLLQ ++A K Sbjct: 55 VTDWEKEEHERETTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVANGKKV 114 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185 LYV+GEES Q+A+RA RLG+ +NL + E ++E+I E+E+P L+V+DS+Q + Sbjct: 115 LYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPSLLVLDSVQTIFSE 174 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245 ++SS GSV+QVRE +T F K + V +VG +TK+GS+AGPKVLEH +D + +G Sbjct: 175 RLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPKVLEHIVDTVLQFEG 234 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE 305 + + +R ++ KNRFG+ E+ VF MT++GL EV PSA F+S GS V E Sbjct: 235 ERFNFYRIVKVIKNRFGSTGEIAVFKMTDKGLEEVPEPSAFFISEKAN-APGSVVFPHTE 293 Query: 306 GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGG 365 G++P+L+E+QALV ++ P+R G + NRLA++LAVL + + DQDVFVNV GG Sbjct: 294 GSKPVLLEVQALVIPALYTTPQRRTQGFDPNRLALILAVLEKEAKIFTRDQDVFVNVAGG 353 Query: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 + V E +ADLA+ +A+VSS +++ +P+D V+FGEVGL+GEIR V G R+ EA + GF+ Sbjct: 354 MSVKEPAADLAVAMAVVSSKKEKEVPKDFVIFGEVGLSGEIRAVHFGDLRLKEAKRFGFK 413 Query: 426 RAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 +A++P + + +GM+I+ V + +A+ V Sbjct: 414 KALIPKS--LEIEIDGMEIYPVSHIQEAIEVL 443 >UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteria RepID=RADA_SYNY3 Length = 505 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/480 (42%), Positives = 301/480 (62%), Gaps = 26/480 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA + FVC+ CGAD+ +W G+C CH + ++ E + A + L + Sbjct: 1 MAKA-RTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSRSSK 59 Query: 61 AKVQK------LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 K + S I E RF +G+ E DRVLGGG+VPG+ ILIGG+PG GKSTLLLQ Sbjct: 60 VKTGQPQAALTFSQIRQENQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQ 119 Query: 115 TLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGL-----PTD------------NLNMLSE 156 +LA ++ + LYV+ EES QQ+ +RA RLG+ P+ NL +L E Sbjct: 120 VAFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLFVLPE 179 Query: 157 TSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIV 216 T+++ I E QP++ +IDSIQ ++ + S+PGSV+QVRE L + AK +++ Sbjct: 180 TNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLF 239 Query: 217 MVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG 276 +VGHVTK+G++AGPKVLEH +D + GD + R LRS KNRFGA E+G+F M + G Sbjct: 240 IVGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSG 299 Query: 277 LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQN 336 L+EV NPS +FL +E SG+++ V EGTRPL+VE+QALV + A+PRR G++ N Sbjct: 300 LQEVLNPSQLFLGSREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYN 359 Query: 337 RLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 RL +LAVL + G+ ++ D +++V GG++V E + DLA+ +A+V+S RDR + +++ Sbjct: 360 RLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRVVDPTMII 419 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 GE+GL G+IRPV + R+ EAAK GF++AIVP ++ G+++ V K+ A++V Sbjct: 420 LGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKGQTGIESA-GIKLIPVGKVFAAIAV 478 >UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C9Y705_9BURK Length = 665 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 211/371 (56%), Positives = 268/371 (72%), Gaps = 8/371 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K + CNECG P+W G+C C+AWNT+ E +A+S A+N +A A Sbjct: 1 MAKD-KTIYTCNECGGTSPKWLGKCPHCNAWNTLIE-SVASSDGPAKNR----FASLAKT 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A+V LSDI +++ R TG +E DRVLGGG+V G +LIGG+PG GKSTLLLQ L L Sbjct: 55 AEVTVLSDIEAQDVERTPTGHEELDRVLGGGMVEGGVVLIGGDPGIGKSTLLLQALDSLQ 114 Query: 121 QQMK-TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K TLYVTGEES QVA+R+ RLGL + +L+E +E+I E +P + VIDSI Sbjct: 115 RSGKNTLYVTGEESGAQVALRSRRLGLDHSQVKVLAEIQLEKILATLEANRPDVAVIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+PGSVAQVRE AA+LTR AK G AIV+VGHVTK+G+LAGP+VLEH +D Sbjct: 175 QTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDT 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD S+FR +R+ KNRFGAVNE+GVFAMTE+GL+ VSNPSAIFLS+ E GS Sbjct: 235 VLYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHAEPVPGSC 294 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 VMV EGTRPLLVEIQALVD +PRR++VGL+++RLA+LLAVLHRH G+ DQDVF Sbjct: 295 VMVTLEGTRPLLVEIQALVDMG-GPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVF 353 Query: 360 VNVVGGVKVTE 370 +N VGGV++ E Sbjct: 354 INAVGGVRIGE 364 >UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain protein n=1 Tax=uncultured marine microorganism HF4000_APKG7H23 RepID=B3T9S3_9ZZZZ Length = 459 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/434 (45%), Positives = 275/434 (63%), Gaps = 7/434 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 +AKA K ++C ECG PRW+G+C C+AW++ A+ P + Sbjct: 4 LAKA-KTLYLCRECGHTSPRWEGRCPLCNAWDSY-----ASFPDSKAAHLPQSTRATTTE 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +KL + + PR S G E DR+LGGG VPGS +LI G PG GKSTLLLQ LA Sbjct: 58 TTARKLREYEASDQPRVSVGLAEVDRLLGGGAVPGSLLLIAGEPGIGKSTLLLQMASHLA 117 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 LY++GEES QV +RA RLG+ + ++ L+ET+ E+I E +P++ ++DSI Sbjct: 118 GTGAPVLYISGEESAAQVRLRAQRLGVSSAEVHFLAETNGERILNELEALRPEMAMVDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + V S+ GSVAQVRE L R+AK RG I + GHVTKDG++AGP+VLEH +D Sbjct: 178 QTLSSDGVPSAAGSVAQVRECTQMLLRWAKERGCPIFLAGHVTKDGAIAGPRVLEHMVDV 237 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + L+G++ S +R LR KNRFGA N++ + M G+ EV +PSA+ L TSGS+ Sbjct: 238 VISLEGESLSSYRLLRCTKNRFGATNDVALLEMRGDGMAEVPDPSAVLLGERQPGTSGSA 297 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V V EGTRPL+ E+QAL + S+ + PRR A G+E +R+ ++ AVL R GG+ + +QD+ Sbjct: 298 VTVTLEGTRPLMAEVQALTNPSLFSPPRRTANGMEFSRVMMIAAVLGRRGGVNLGNQDLI 357 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 V+V GG+++ E +ADLA L++ SSLRD PL VV GEVGL GE+R VP + R+ EA Sbjct: 358 VSVAGGLRIREPAADLATALSIASSLRDIPLDSQAVVLGEVGLNGEVRSVPQLERRLVEA 417 Query: 420 AKHGFRRAIVPAAN 433 +HGF RA+VP N Sbjct: 418 VRHGFTRALVPKNN 431 >UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B3QT35_CHLT3 Length = 459 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/433 (43%), Positives = 276/433 (63%), Gaps = 4/433 (0%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA R +VC+ CGA ++QG+C C +W T+TE + +P + +++ Sbjct: 1 MAKAKTR-YVCSNCGAVSIKYQGKCFECGSWGTLTEESVEPAPTFS--QKIHSKHSPNVR 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++ S++ E R ST +E DRVLGGG++ S +L+GG PG GKSTL+LQ L Sbjct: 58 VKPKRFSELEDIEEERLSTRIEELDRVLGGGLMTASVVLVGGEPGIGKSTLMLQLAANLV 117 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LY++ EESL Q+ RA+R+ + ++++ ++SET +E I E+P ++++DSIQ Sbjct: 118 GK-SILYISAEESLHQIRNRAYRMNIRSEDILLVSETQLENILDTVAAEKPDVLIVDSIQ 176 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + +SSPG+V QVRE + L AK G+ + ++GH+TK+G++AGPKVLEH +D Sbjct: 177 TIFSIGFESSPGTVTQVRECTSKLMHLAKREGITVFIIGHITKEGTIAGPKVLEHIVDTV 236 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD R+R LR+ KNRFG+ NE+GVF MTE GL EV+NPS FL+ SGS V Sbjct: 237 LQFEGDNHYRYRILRALKNRFGSTNEIGVFEMTEMGLSEVTNPSEAFLAERSFGVSGSCV 296 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG RPLLVEIQALV + P+R++ G +Q RL++LLAVL + GL M QDVF+ Sbjct: 297 CASLEGARPLLVEIQALVSKTNYTVPQRISSGFDQRRLSLLLAVLEKRIGLSMWSQDVFL 356 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N GG+++ E + +LA+ +A+ S +RD P V GE+GLAGE+R V + RI EA Sbjct: 357 NAAGGLRLLEPAVELAVCVAIASGMRDIPADSATVAIGEIGLAGELRAVSHIERRIIEAE 416 Query: 421 KHGFRRAIVPAAN 433 K GF R I+P +N Sbjct: 417 KLGFERVILPKSN 429 >UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BB82_SANKS Length = 473 Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 278/447 (62%), Gaps = 9/447 (2%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 + C ECG +W G+C C W ++TE AAS + A + VA Q + + Sbjct: 20 YRCTECGWTTSKWVGRCGECQEWGSVTEAAAAAS-----GPKTVASAPTRSVA--QPIGE 72 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLY 127 I ++ TG EFDRVLGGG+VPG+ +L+ G PG GKSTLLL A+ + LY Sbjct: 73 IDVDSAQAAPTGISEFDRVLGGGIVPGAVVLLAGEPGVGKSTLLLDVASTTARAGRRVLY 132 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 +TGEES QV +RA R+ L + +ET + Q+ E P L+++DS+Q + A V Sbjct: 133 ITGEESAGQVRLRAERIDALAPTLLLAAETDLGQVLGQIEATDPDLLIVDSVQTVASAQV 192 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 SPG V QVRE A+ L AK R + +V+VGHVTKDG++AGP+ LEH +D + +GD Sbjct: 193 DGSPGGVGQVREVASALIAAAKGRNMPVVLVGHVTKDGAVAGPRTLEHLVDVVLQFEGDR 252 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 SR R +R+ KNR+G +E+G F +TE G+ +++PS +FLS + G+ V V EG Sbjct: 253 HSRLRMVRAVKNRYGPTDEVGCFELTEDGIAGLADPSGLFLSHINLAVPGTCVTVTLEGR 312 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 RPL +EIQ+LV S +ANPRR G++ +RLA++LAV+HRH G ++ D DV+V+ +GG + Sbjct: 313 RPLALEIQSLVVASPLANPRRTTSGIDSSRLAMILAVIHRHLGARLTDADVYVSTIGGAR 372 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 VTE +ADLA+ LA +S+L ++P+P + GEVGLAGE+R V R+SEAA+ GF RA Sbjct: 373 VTEPAADLAIALATLSALENKPVPVGTIAIGEVGLAGELRAVSGISRRLSEAARLGFTRA 432 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDAL 454 +VP AP GM + L++A+ Sbjct: 433 VVPPGT-SGPAPAGMTLLPAANLAEAV 458 >UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum sp. Group II RepID=A3EUB1_9BACT Length = 461 Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/456 (44%), Positives = 282/456 (61%), Gaps = 11/456 (2%) Query: 8 AFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA-GVAKVQKL 66 ++ C CG +W G C +C E P+V+ + RL G + ++ Sbjct: 9 SYECPACGYRSAKWMGFCPSCQ------EAPEGLVPVVSASSRLESLLSEGDGTPRALRM 62 Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL 126 D+ + R S+GF+EFDRVLGGG V GS IL+GG+PG GKSTL LQ + +A K L Sbjct: 63 EDVGKVAVERTSSGFREFDRVLGGGFVRGSFILLGGDPGVGKSTLALQAVAHMANGHKVL 122 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD 186 Y GEES +QV MR RLG +L +L ET +E I + P+ +V+DSIQ + M Sbjct: 123 YAAGEESPEQVRMRYDRLGRKGGDLFILPETDLEAIVREVKRLSPEFLVVDSIQTVTMGA 182 Query: 187 VQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGD 246 S GSV +RE+A+ L AK V +++VGHVTK+G +AGP+VLEH +D + L+GD Sbjct: 183 DGPSSGSVGLLRESASVLLELAKRASVTVLIVGHVTKEGVIAGPRVLEHLVDTVLYLEGD 242 Query: 247 ADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEG 306 R LR+ KNRFG ELG+F M+ GLREV N S+ FL E SGS V+ EG Sbjct: 243 RSHPVRLLRTVKNRFGPTRELGIFEMSPDGLREVENASSFFLEGRKERLSGSVVVSSLEG 302 Query: 307 TRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGV 366 TRPLLVE+Q+LV + NPRRVA G+ +RL+IL AVL R GL ++ +D++VNV GGV Sbjct: 303 TRPLLVELQSLVSPTTFPNPRRVAQGVPVSRLSILAAVLERRAGLSLSSRDIYVNVAGGV 362 Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 + ET++DL L+L++ SL+D L D+VVFGEVGL GE+R V + R++EA +HGF Sbjct: 363 SLEETASDLGLVLSLAGSLKDISLSPDVVVFGEVGLGGEVRRVQEMESRLTEARRHGFSH 422 Query: 427 AIVPAANVPKKAPE--GMQIFGVKKLSDALSVFDDL 460 A++PA+ KK P+ G+ + V+++ +AL + L Sbjct: 423 AVLPASG--KKYPDVSGLSLHPVREVGEALELLKKL 456 >UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEX2_9BACT Length = 444 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/447 (41%), Positives = 289/447 (64%), Gaps = 9/447 (2%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 F C ECG + +W G+C AC AW T+ E ++ + +N + + ++K +++ D Sbjct: 5 FFCTECGFETGKWSGKCPACGAWGTLKE----STRVTGKNNK---PVETLPLSKPERIID 57 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLY 127 + +E R TG KEFD VLGGG+V G ILIGG PG GKSTL+LQ + +Q KTLY Sbjct: 58 LEYDEFSRLLTGIKEFDLVLGGGIVKGMLILIGGEPGIGKSTLMLQLSEWMGKQNKKTLY 117 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 +GEES +Q+ +R+ L + ++N+ +L + E I E+ +P L ++DSIQ + + + Sbjct: 118 CSGEESAEQIRLRSKHLKVTSENIYLLCTNNAEHIIEAIEDNKPDLAIVDSIQSVSIPSL 177 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 + PG+V Q+RET + L R K G+ + +VGHVTK+G +AGPK++EH +D + +G+ Sbjct: 178 DALPGTVTQLRETTSRLLRTVKNLGIPLFLVGHVTKEGLVAGPKIIEHMVDTVLYFEGEQ 237 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 S+++ LR+ KNRFG+ NE+G+F MT GL EVSNP+ IFLS ++ G+++ + EG+ Sbjct: 238 RSQYKILRAVKNRFGSTNEIGLFEMTHLGLIEVSNPNNIFLSH-EQNNIGTAISCIMEGS 296 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 R +VE+Q LV+ S P+RVAVGL+Q +LA+LLA+L ++ L + + DVFVN+ GG++ Sbjct: 297 RSFIVEVQTLVNASNYGTPQRVAVGLDQKKLAMLLAILEKNLSLYLRNCDVFVNLTGGIR 356 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 T+ S DLA+L A++SS++D+PL + V GEVGL GE+RPV + IS+ K G+ + Sbjct: 357 STDPSLDLAILAALISSMKDQPLIEKAVFIGEVGLNGEVRPVSQLDKHISQTLKLGYEKI 416 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDAL 454 + + K P+ +++ +K L AL Sbjct: 417 FISSYAKVKANPKVVKVKDIKALYSAL 443 >UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C33601 Length = 484 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/487 (41%), Positives = 306/487 (62%), Gaps = 40/487 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE---VRLAASPMVARNERLSGYAGS 57 MAK + +VCN CG + +W G+C +C + ++ E V ++S + R ER S Y+ Sbjct: 1 MAKK-RNVYVCNICGTESVQWFGKCESCQTYGSLEEKIVVTPSSSDNILRRER-SLYSNK 58 Query: 58 AGVAKVQKLSDISL-------EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKST 110 ++ +IS E +F +G+ E DRVLGGGVVPGS +LIGG+PG GKST Sbjct: 59 ENNSRATPKPNISNYFDEIVDNEKMQFQSGYDELDRVLGGGVVPGSLVLIGGDPGIGKST 118 Query: 111 LLLQTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGL----------------PTDNLNM 153 LLLQ KLAQ++ + LY++ EES QQ+ +RA RL + NL + Sbjct: 119 LLLQVANKLAQKLPRILYISAEESAQQIKLRASRLMMLGTEEKHIERKELERCNRKNLFI 178 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 LSET++E+I E QP++ +IDSIQ ++++ + S+PGSV+QV+E + L R AK + Sbjct: 179 LSETNLEEILRELESLQPQVAIIDSIQTLYLSTLNSAPGSVSQVKECTSVLMRLAKRDNI 238 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 +++VGHVTK+G++AGP+VLEH +D + +GD + R LRS KNRFGA +E+G+F M Sbjct: 239 TLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRVLRSVKNRFGATHEIGIFEMI 298 Query: 274 EQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL 333 E GL EV NPS +F+ +E+ G++++V EGTRPL+VE+QALV + +PRR G+ Sbjct: 299 ESGLVEVKNPSELFMGNQNELVPGTAIVVACEGTRPLVVELQALVSPTSYPSPRRSTTGI 358 Query: 334 EQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD 393 +RL +LAVL + G+ ++ DV+V+ GG+ V E +ADL + +A+ +S++D+ + + Sbjct: 359 AYSRLQQILAVLEKRVGIPLSKLDVYVSSTGGLGVEEPAADLGIAIAITASVKDKVIIPN 418 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA-----NVPKKAPEGMQIFGVK 448 ++ GEVGL G++R VP + R+ EA K GF RAIVP + NV +++ V Sbjct: 419 TILIGEVGLGGQVRSVPQLELRLKEAVKLGFTRAIVPNSKNYTFNV------NLKVIPVG 472 Query: 449 KLSDALS 455 K++DA++ Sbjct: 473 KVTDAIN 479 >UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX97_9BACT Length = 478 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 285/467 (61%), Gaps = 15/467 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGY----AG 56 MAK + ++ C CG P+W G C ACH E P + R+ Y AG Sbjct: 1 MAKKDQESYRCPACGYRSPKWMGFCPACH------EAPEGLVPEESPGGRVERYVREAAG 54 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 A ++ +S + + +LPR STG EFDRVLGGG+VPGS IL+GG+PG GKSTL+LQT+ Sbjct: 55 GAAESRALPISGVVVGDLPRSSTGLSEFDRVLGGGIVPGSFILLGGDPGIGKSTLVLQTV 114 Query: 117 CKLAQQMKTLYVTGEESLQQVAMRAHRL---GLPTDNLNMLSETSIEQICLIAEEEQPKL 173 LA++ L V GEES +Q+ MR RL T L +L ET + + A P + Sbjct: 115 ANLAREKTVLVVCGEESPEQIRMRFDRLEAGKKKTSGLFLLPETDLSLVLAEAARLSPDI 174 Query: 174 MVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL 233 +++DSIQ + + + S GSV Q+RETAA L FAK V +++GHVTKDG++AGP+VL Sbjct: 175 LIVDSIQTVFLPEWTQSAGSVIQLRETAATLLEFAKRSRVTTLVIGHVTKDGTIAGPRVL 234 Query: 234 EHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE 293 EH +D + L+G+ R LR+ KNRFG E+G+F M E GL EV+NPSA FL D Sbjct: 235 EHLVDTVLYLEGERGQPLRILRTAKNRFGPTQEVGLFEMEEGGLVEVTNPSAFFLEGRDP 294 Query: 294 VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM 353 GS+V+ EG+RP+LVE+QAL + + PRRV G+ NRLA+L AVL R GL + Sbjct: 295 GRPGSTVVCGMEGSRPILVELQALAAPTSLPMPRRVTQGVSSNRLALLTAVLVRRIGLDL 354 Query: 354 ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 + D+++NVVGGV++ ET+ DL + L +VSS+R+ LP VV GEVGLAGE+R +P Sbjct: 355 SGMDLYLNVVGGVEIEETALDLGIALGVVSSVRELILPAGWVVVGEVGLAGEVRRIPGII 414 Query: 414 ERISEAAKHGFRRAIVPA--ANVPKKAPEGMQIFGVKKLSDALSVFD 458 ER++EAA+ GF + P + + P G+ V L AL+ + Sbjct: 415 ERMAEAARLGFSHMVGPVLPSGKSRPLPRGIVYHPVSDLRQALAFLE 461 >UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocaceae RepID=UPI0001C1683A Length = 522 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/511 (40%), Positives = 301/511 (58%), Gaps = 68/511 (13%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK F+C+ CG+++ +W G+CS C ++++ E A + + G+ + Sbjct: 1 MAK-PKTIFICSNCGSEFSQWFGKCSNCDTYDSLVEQN-------ANSFGVGGWHSAQPS 52 Query: 61 AKVQKLS---------DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 AK K S IS ++ R+ +G+ E DRVLGGGVVPGS +LIGG+PG GKSTL Sbjct: 53 AKSTKPSKPRASLTFDQISDRQIARWESGYSELDRVLGGGVVPGSMVLIGGDPGIGKSTL 112 Query: 112 LLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGL------------------------- 146 LLQ +L+Q+ + LYVTGEES QQV +RA RLG+ Sbjct: 113 LLQVSNELSQRYRILYVTGEESGQQVKLRASRLGMSKPLQVVSMEDSNTSSESSHPLPET 172 Query: 147 -PTDN---------------------LNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 P +N L +L ET +E+I + +P L VIDSIQ + Sbjct: 173 DPGNNVGDAVEDNHRVTVEHHTISSDLYVLPETDLEEILREIDSLKPNLAVIDSIQTVFF 232 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 + S+PGSVAQVRE A L + AK + +++VGHVTK+G++AGP+VLEH +D + + Sbjct: 233 PALTSAPGSVAQVRECTAALMKVAKHEDITMLIVGHVTKEGTIAGPRVLEHLVDTVLYFE 292 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 GD + R LR+ KNRFGA +E+G+F M GLREV NPS +FL DE + G++++V Sbjct: 293 GDRFASHRLLRTVKNRFGATHEIGIFEMVSNGLREVPNPSELFLGNRDEPSPGTAIVVAC 352 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EGTRP++VE+QALV + +PRR G++ NRL +LAVL + G+ M+ D +V G Sbjct: 353 EGTRPIVVELQALVSPTSYPSPRRAGTGVDFNRLVQILAVLEKRVGVPMSKLDSYVASAG 412 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G+ V E + DL + +A+V+S RDR + V+ GEVGL G++R V + R+ EAAK GF Sbjct: 413 GLSVEEPAVDLGIAVAIVASFRDRIVDPQTVLIGEVGLGGQVRSVSQMELRLKEAAKLGF 472 Query: 425 RRAIVPAANVPKKAPE-GMQIFGVKKLSDAL 454 +RAI+P +K P+ ++I V K+ DA+ Sbjct: 473 KRAIIPKG---QKFPDLKIEILEVSKVIDAI 500 >UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickettsiales RepID=RADA_RICBR Length = 448 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/426 (44%), Positives = 277/426 (65%), Gaps = 13/426 (3%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K+ ++C+ CG P+W GQC C W +I E ++ ++ +A+ GS ++ Sbjct: 5 KKHYICSNCGNTSPKWSGQCFDCGVWGSIIEEKVISNKNIAK-------IGSK--QDFEQ 55 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC-KLAQQMK 124 LS ++ + R ST E DRVLGGG+V GSAILIGG+PG GKSTLLLQ + A ++K Sbjct: 56 LSS-NVTDQVRISTPIGELDRVLGGGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASKVK 114 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQI--CLIAEEEQPKLMVIDSIQVM 182 LY+TGEESL Q+ +RA RL L D N+L+ ++E I L A + L+VIDSIQ + Sbjct: 115 CLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQTI 174 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ S PG+V+Q+R A L +AK + I++ HVTKDG LAGPK+LEH +D + Sbjct: 175 ATRELTSPPGTVSQIRTCAHELVNYAKQNNIIILLSCHVTKDGQLAGPKLLEHLVDTVLY 234 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +GD ++ FR LRS+KNRFG V E+GVF M+ GL EV+NPS +FL + ++ G+++ Sbjct: 235 FEGDHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPSELFLMKREQNVIGTAIFA 294 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EG+RPLL+E+QAL+ S M PRR AVG + NRL+++LAVL GL +A+ +V++++ Sbjct: 295 GIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRIGLNLANYEVYLSI 354 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GG+K+ E ++DLA+ +++S+ ++PLP+ V FGE+ L+GEIR + RI EA K Sbjct: 355 AGGLKINEPASDLAVAASLISAATNKPLPEHSVFFGEISLSGEIRKTAKAEARIKEALKL 414 Query: 423 GFRRAI 428 GF I Sbjct: 415 GFNNII 420 >UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L030_THERP Length = 470 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/451 (45%), Positives = 298/451 (66%), Gaps = 9/451 (1%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 + +VC CG + + G+C +C AW T+ E + A+P +G A G A VQ+ Sbjct: 9 RTVWVCQSCGLESSGYYGRCPSCGAWGTMVEQAVDATPA-------TGDAKGTG-APVQE 60 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MK 124 LS ++ E R S EFDRVLGGG+VPG+ +L+GG+PG GKSTLLLQ +LA + ++ Sbjct: 61 LSRVTSAERTRLSLRSPEFDRVLGGGLVPGALVLLGGDPGIGKSTLLLQAALRLASEGLR 120 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 LYV EES +Q+ +RA RLG +D + +L+ET++++ IA+E P ++++DSIQ + + Sbjct: 121 VLYVAAEESPEQIRLRADRLGKTSDGVLILAETALDRAIEIAQELDPAILIVDSIQTVFL 180 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 + +SSPGSV+QVR+ A L +FAK + +VGHVTK+G +AGP+V+EH +D + L+ Sbjct: 181 SSSESSPGSVSQVRDCTAQLLQFAKRARTPVFLVGHVTKEGLIAGPRVVEHMVDVVLYLE 240 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 G+ + R LR+ KNRFG+ NE+GVF MT+ GL +VSNPSA+FL+ +GS+V+V Sbjct: 241 GERFHQHRLLRAAKNRFGSTNEIGVFEMTDSGLLDVSNPSALFLAERASHAAGSAVVVTL 300 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EGTRP+L+E+QAL + PRR+A G + RL +L+AVL +H GL++ +QDVFVNV G Sbjct: 301 EGTRPILIEVQALTSSAGYGTPRRIATGFDATRLQVLVAVLSKHAGLKLGEQDVFVNVTG 360 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G ++ E +ADL + LA+ SS PL D V GE+GLAGE+R V + R+ EAA+ GF Sbjct: 361 GYRLVEPAADLGVALAIASSASGLPLDDDAVFIGELGLAGEVRSVHGLERRLQEAARLGF 420 Query: 425 RRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 R A VPA+ G++I V ++ A+S Sbjct: 421 RSAYVPASARISSPVSGLRIVAVGSIAQAVS 451 >UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae RepID=B4SGR3_PELPB Length = 457 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 288/462 (62%), Gaps = 12/462 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA++ R ++C+ CGA ++QG+C C +W T+ E R+ R+ + GV Sbjct: 1 MARSSTR-YICSNCGAISLKYQGKCFECQSWGTLQESRVEPEQKKQRD------GSTRGV 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A ++ L D E R TG E DRVLGGG++ GSA+L+GG PG GKSTL+LQ +LA Sbjct: 54 AVMENLHDSVPSEFQRVMTGIGELDRVLGGGLMQGSAVLVGGEPGIGKSTLMLQLAPRLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LY++GEES Q+ RA RL + NL ++ E ++E I I E+P L++IDSIQ Sbjct: 114 P-AKVLYISGEESPNQIRERAQRLSIKAPNLWLIPEVNLESILAIIAHEKPALVIIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 +H + QSS G++ Q+RE AA L R AK + V ++++GH+TK+G+LAGPK LEH +D Sbjct: 173 TVHSDEYQSSAGTITQIRECAATLIRAAKQQNVILMIIGHITKEGALAGPKALEHMVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ R+R +RS KNRFG+ NE+GVF M E GL EVSNPS F+S G+S+ Sbjct: 233 LQFEGEGYQRYRIIRSVKNRFGSTNEIGVFRMDESGLEEVSNPSEFFISGRRTDVPGNSI 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EGTR LLVE+QALV + + P+R++ G + R++I+LAVL ++ QDVFV Sbjct: 293 LAAIEGTRALLVEVQALVSKTNYSMPQRISTGFDLKRMSIILAVLENRLRIETWGQDVFV 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 + GG+K+ E +ADLA+ A+ S L +RP+ V GE+GLAGE+R + + RI EAA Sbjct: 353 KIAGGLKLAEPAADLAIAAAIASGLMNRPVDPATVCCGEIGLAGELRAISDSERRIREAA 412 Query: 421 KHGFRRAIVPAANVPKKAPE----GMQIFGVKKLSDALSVFD 458 GF++ ++P AN + P + I G K L +AL + Sbjct: 413 HLGFKQIVLPEANTRELKPSLKNLPIIITGCKTLQNALDELN 454 >UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acetobutylicum RepID=Q97EC5_CLOAB Length = 450 Score = 364 bits (934), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 192/459 (41%), Positives = 279/459 (60%), Gaps = 16/459 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+K K FVC ECG +W G+C +C++WN+ E ER+ S Sbjct: 1 MSKV-KSFFVCQECGYQSVKWLGKCPSCNSWNSFVE-----------EERVENKKASKIT 48 Query: 61 --AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 ++ + +++I + R+ T E +RVLGGG+V GS LI G PG GKSTLLLQ Sbjct: 49 LNSEPKCINNIKSGQYERYDTNNTELNRVLGGGLVKGSITLISGAPGIGKSTLLLQICQD 108 Query: 119 LAQQM-KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 +A + K LYV+GEES Q+ MR RLG+ + N+ +L+ET++E I E +P ++ID Sbjct: 109 IALKYGKVLYVSGEESEHQIKMRGDRLGVTSANIYILAETNMESIERHVENIKPAFVIID 168 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ ++ + S+PGSV+QVRE A + R AKT + +V HVTK G LAGP+VLEH + Sbjct: 169 SIQTLYKDQITSAPGSVSQVRECANDIMRIAKTDNIPFFIVAHVTKQGELAGPRVLEHIV 228 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + +G FR LR+ KNRFG +E+GVF M E+GL ++ NPS++FL + G Sbjct: 229 DTVLTFEGQRTEEFRILRTVKNRFGTTSEIGVFEMKEEGLEQIHNPSSLFLEETNFNQEG 288 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S V+ + EGTRP+LVEIQALV + PRR +VG++ +RL ++LAVL + + + D Sbjct: 289 SVVIGIMEGTRPILVEIQALVSKTNAVMPRRTSVGIDSSRLNLILAVLEKKLKVPFYNCD 348 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD-LVVFGEVGLAGEIRPVPSGQERI 416 V+VNVVGG+ + T DL L LA+VSS++ + D ++V GE+GL GE+RPV + Sbjct: 349 VYVNVVGGLNIEGTYGDLGLALALVSSVKGVSIKLDKMIVVGEIGLTGEVRPVSFSDRIV 408 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 +EA K GF+ ++P N+ + I GV L +A++ Sbjct: 409 NEADKLGFKNILMPQKNIKNDKNIAINIIGVSYLKEAVN 447 >UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae RepID=D1ALG8_SEBTE Length = 450 Score = 363 bits (932), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 172/444 (38%), Positives = 275/444 (61%), Gaps = 15/444 (3%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITE---VRLAASPMVARNERLSGYAGSAGV 60 A K ++C+ECG +W G+C C +W T E ++ S + A + Sbjct: 2 ASKSGYICSECGYTSKKWLGKCPNCESWGTFEEEVDIKKTLSKISAED------------ 49 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL +I L + R T F EFDRVLGGG+V G +LI GNPG GKST LLQ + + + Sbjct: 50 VEIVKLEEIELGKEFRMVTKFSEFDRVLGGGLVKGEVVLISGNPGIGKSTFLLQLIDEYS 109 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + Y++GEESL+Q+ RA RLG+ + +L + +ET++E+I I ++ PK++VIDSIQ Sbjct: 110 KTGNVFYISGEESLRQIKQRADRLGVKSKSLYLANETNLEKIESIILKDNPKIVVIDSIQ 169 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ +V S PGS+ Q+RET + AK+R ++ +VGH+TKDG +AGPK+LEH +D Sbjct: 170 TLYSENVNSIPGSMTQIRETTLKIIEMAKSREISFFIVGHITKDGKVAGPKMLEHMVDAV 229 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + ++G+ +S +R +R+ KNRFG+ NE+ +F M E G+ E++NPS F+ +E GS + Sbjct: 230 IQIEGEENSFYRIIRTLKNRFGSTNEISIFDMKEDGISEITNPSEFFIGEREEKNVGSII 289 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EG+R L E+Q+L+ ++ PRR+ G ++NR+ IL AVL + L ++ +D+F+ Sbjct: 290 TPILEGSRVFLFEVQSLLTNTTFGLPRRIIEGYDKNRVEILGAVLSKFLKLDLSSKDIFI 349 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N+ GG+ + + S+DLA++ +++SS+ + Q + GE+GL GEIR V + RI E Sbjct: 350 NIPGGLTLKDRSSDLAVIFSLISSINALAVSQKIAAVGELGLRGEIRRVAFIKNRIKELE 409 Query: 421 KHGFRRAIVPAANVPKKAPEGMQI 444 + GF+ +P AN E +I Sbjct: 410 RLGFKGVYLPTANKKDLESEDFKI 433 >UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickettsia RepID=RADA_RICFE Length = 446 Score = 363 bits (931), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 185/426 (43%), Positives = 270/426 (63%), Gaps = 13/426 (3%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K+ ++C+ CG P+W GQC C W +I E ++ + + + + K Sbjct: 5 KKHYICSNCGNTSPKWSGQCFDCGVWGSIVEEIVSTNKAIVK---------TGSKQDFDK 55 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMK 124 LS E+L R T E +RVLGGG+V GSAILIGG+PG GKSTLLLQ A +M Sbjct: 56 LSGHVAEQL-RIPTPIGELNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMN 114 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQI--CLIAEEEQPKLMVIDSIQVM 182 LY+TGEESL Q+ +RA RL L N ++L+ T++E I + A + L+VIDSIQ + Sbjct: 115 CLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNIDLVVIDSIQTI 174 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ S PG+V+Q+R A L +AK + I++ HVTKDG LAGPK+LEH +D + Sbjct: 175 TTKELSSPPGTVSQIRICANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTVLY 234 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +GD ++ FR LRS+KNRFG V E+GVF M GL EV+NPS +FL + ++ G+S+ Sbjct: 235 FEGDHNNHFRILRSYKNRFGGVGEIGVFEMCGSGLIEVTNPSELFLMKREQNVIGTSIFA 294 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EG+RPLL+E+QAL+ S M PRR AVG + NRL+++LAVL GL +A+ +V++++ Sbjct: 295 GIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDANRLSMILAVLSSRIGLNLANYEVYLSI 354 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GG+K+ + ++DLA+ +++S+ +P+P+ V FGE+ L+GEIR + RI EA K Sbjct: 355 AGGLKIADPASDLAVAASLISAATGKPVPEHSVFFGEISLSGEIRKTAKAETRIKEAVKL 414 Query: 423 GFRRAI 428 GF + I Sbjct: 415 GFNKII 420 >UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteria RepID=RADA_STRP6 Length = 453 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 190/444 (42%), Positives = 276/444 (62%), Gaps = 12/444 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG P++ G+C C AW++ E +N R+S + Sbjct: 1 MAKK-KATFICQECGYQSPKYLGRCPNCSAWSSFVE---EVEVKEVKNARVSLAGEKSRP 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K++ + +IS R T EF+RVLGGGVVPGS ILIGG+PG GKSTLLLQ +LA Sbjct: 57 VKLKDVDNISYH---RTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LYV+GEES +Q+ +R+ RLG + + +ET+++ I E +P ++IDSIQ Sbjct: 114 NKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFLIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + D+ GSV+QVRE A L + AKT +A +VGHVTK+G+LAGP++LEH +D Sbjct: 174 TIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ FR LR+ KNRFG+ NE+G+F M GL EV NPS +FL + +GS+V Sbjct: 234 LYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAV 293 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 +V EG+RP+L E+Q+LV ++ N RR GL+ NR+++++AVL + GL + +QD ++ Sbjct: 294 VVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL 353 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GGVK+ E + DLA+ +A+ SS +++P GE+GL GEIR V ++RI+EAA Sbjct: 354 KSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAA 413 Query: 421 KHGFRRAIVPAANVPKKAPEGMQI 444 K GF + PK A +G+ I Sbjct: 414 KLGFTKVY-----APKNALQGIDI 432 >UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacteria RepID=RADA_STRP3 Length = 453 Score = 360 bits (924), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 189/444 (42%), Positives = 275/444 (61%), Gaps = 12/444 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG P++ G+C C AW++ E +N R+S + Sbjct: 1 MAKK-KATFICQECGYQSPKYLGRCPNCSAWSSFVE---EVEVKEVKNARVSLAGEKSRP 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K++ + +IS R T EF+RVLGGGVVPGS ILIGG+PG GKSTLLLQ +LA Sbjct: 57 VKLKDVDNISYH---RTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LY +GEES +Q+ +R+ RLG + + +ET+++ I E +P ++IDSIQ Sbjct: 114 NKGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFLIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + D+ GSV+QVRE A L + AKT +A +VGHVTK+G+LAGP++LEH +D Sbjct: 174 TIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ FR LR+ KNRFG+ NE+G+F M GL EV NPS +FL + +GS+V Sbjct: 234 LYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAV 293 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 +V EG+RP+L E+Q+LV ++ N RR GL+ NR+++++AVL + GL + +QD ++ Sbjct: 294 VVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL 353 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GGVK+ E + DLA+ +A+ SS +++P GE+GL GEIR V ++RI+EAA Sbjct: 354 KSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAA 413 Query: 421 KHGFRRAIVPAANVPKKAPEGMQI 444 K GF + PK A +G+ I Sbjct: 414 KLGFTKVY-----APKNALQGIDI 432 >UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL59_9BACT Length = 445 Score = 358 bits (919), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 187/431 (43%), Positives = 271/431 (62%), Gaps = 11/431 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K +VC CG P W G+C C++W++ E + A +R++ Sbjct: 1 MAKK-KAKYVCQSCGYVSPGWIGKCPECNSWSSFVEEIQVDAATTAIGKRIAK------- 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 AK L D+ E R TG E D+VLGGG+V GS +L+GG PG GKST++LQ L+ Sbjct: 53 AKPVSLKDVKGLETERTPTGMPELDQVLGGGLVKGSVLLVGGEPGIGKSTIMLQCAGILS 112 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + ++K LYV+GEES Q+ +R+ RLG+ + +++LS S+E + EEE+P +++DSI Sbjct: 113 RDRLKVLYVSGEESAAQLRLRSDRLGVSENEIDILSTNSLEDVLQACEEEKPDYIILDSI 172 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + D+ S+ G+V QV+ L AK+RG+ +++VG VTKDG +AGPKVLEH +D Sbjct: 173 QTIASDDLNSAAGTVGQVKHVTYRLVELAKSRGITVMIVGQVTKDGYIAGPKVLEHLVDT 232 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD R LRS KNRFG NE+G+F MT++GL E+S+ S F+ + ++G Sbjct: 233 VLYFEGDYSRGVRILRSVKNRFGPTNEVGLFEMTDKGLLELSSYS--FVDDRADNSAGRV 290 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EGTR L+E+QALV + P+R +G + NRL +LLAVL + GG+ +A D++ Sbjct: 291 FVPVMEGTRAFLIEVQALVAPTFYQFPKRNCMGFDLNRLNMLLAVLEKKGGVNLAGSDIY 350 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV GG+K+TETSADLA+ A+VSS RDRP+ GEVGL G IRPV + R+SE+ Sbjct: 351 INVAGGMKITETSADLAICAAIVSSFRDRPIDPHSTFIGEVGLTGVIRPVSNMGSRLSES 410 Query: 420 AKHGFRRAIVP 430 K G R+ +P Sbjct: 411 YKMGIRKYYLP 421 >UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus marinus RepID=A8G2D8_PROM2 Length = 453 Score = 358 bits (918), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 172/427 (40%), Positives = 275/427 (64%), Gaps = 16/427 (3%) Query: 8 AFVCNECGADYPRWQGQCSACHAWNTITE-VRLAASPMVARNERLSGYAGSAGVAKVQK- 65 F+C CG++ ++ G+C C++WN+I E +++ + S Y + +K Sbjct: 7 TFICQNCGSETSQYFGRCLNCNSWNSIVEEIKI----------KRSKYQDLKDIKNSKKS 56 Query: 66 --LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 ++IS +++ RF++GFKE DRVLGGG+VPGS +L+GG PG GKST++LQ+ K++ Sbjct: 57 IPFNEISSKKISRFTSGFKEIDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNE 116 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 K LYVT EESL+QV +R RL ++ L + +ET++ I + P +IDSIQ +H Sbjct: 117 KVLYVTAEESLEQVKIRWERLNQDSNELKIFAETNLSLIMEEIKSVNPSFAIIDSIQAIH 176 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 +++SSPGSV+QVR ++ L AK ++++++GHVTKDG+LAGPK LEH +D + Sbjct: 177 NHEMESSPGSVSQVRACSSELQNLAKNNNISLLIIGHVTKDGALAGPKTLEHLVDVVINF 236 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD S R LRS KNRFG+ E+G+F M E+GL EV NPS+IF ++ E SG + + Sbjct: 237 EGDKVSSHRLLRSIKNRFGSTFEIGIFEMLEKGLVEVKNPSSIFTNK--ENISGVTTTIT 294 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EG+RP V+IQALV+ + +NPRR G+ NRL +LAV+ +H G+++++ D ++ Sbjct: 295 NEGSRPFAVDIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYIATG 354 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG ++ + S+DL + ++++SSL++ P GE+GL+G++R + + +I EA + G Sbjct: 355 GGFEINDPSSDLGVAISILSSLKNLPPLASTSFIGELGLSGQVRKSNNLRTKIEEAVRMG 414 Query: 424 FRRAIVP 430 + +VP Sbjct: 415 IKNIVVP 421 >UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales RepID=Q3AH17_SYNSC Length = 465 Score = 357 bits (915), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 200/424 (47%), Positives = 274/424 (64%), Gaps = 7/424 (1%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 FVC CGA ++ G+C C +WN++ E + P R S A + + Sbjct: 8 FVCQVCGARARQFFGRCPECASWNSLVE---QSQPADDGRRRRSAPDPEVAAAPRRSTAM 64 Query: 69 ISLEELP--RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL 126 SLE+ P R +TG EFDRVLGGG+VPGS +L+GG+PG GKSTLLLQ+ +A L Sbjct: 65 ASLEDQPLQRLATGSAEFDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQSASAMAAGASVL 124 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD 186 YV+ EES QQV +R RL L +L+ET +E + E +P + +IDSIQ +H A+ Sbjct: 125 YVSAEESAQQVKLRWQRLAGGASELQLLAETDLELVLEELEALRPAVAIIDSIQALHDAN 184 Query: 187 VQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGD 246 + S+PGSV QVRE AA L R AK + +++++VGHVTK+G LAGPKVLEH +D + +GD Sbjct: 185 LTSAPGSVGQVRECAAALQRLAKRQNISLLLVGHVTKEGMLAGPKVLEHLVDAVLTFEGD 244 Query: 247 ADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEG 306 + R LR+ KNRFGA +ELG+F M GL EV NPS +FLS D SG + +V EG Sbjct: 245 RFASHRLLRAVKNRFGATHELGLFEMQSGGLAEVGNPSELFLS--DARASGVATIVACEG 302 Query: 307 TRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGV 366 TR L+V++QALV+ + A+PRR A G+ NRL +LAVL +H GL ++ D ++ V GG+ Sbjct: 303 TRSLVVDLQALVNVTSYASPRRTATGIGTNRLHQILAVLEKHMGLPLSRFDCYLAVAGGL 362 Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 +V E +ADL + A+V+S RD LP V+ GE+GL G++RPV + RI EAA+ GF+R Sbjct: 363 EVEEPAADLGVAAAVVASFRDLTLPAGTVLIGELGLGGQLRPVGQLELRIQEAARLGFQR 422 Query: 427 AIVP 430 A+VP Sbjct: 423 AVVP 426 >UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria RepID=Q0BVC8_GRABC Length = 460 Score = 357 bits (915), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 206/457 (45%), Positives = 290/457 (63%), Gaps = 17/457 (3%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPM-VARNERLSGYAGSAGVAKVQKLS 67 +VC CGA YP+W G+C AC WN+I E +++P+ V RL+ + A S Sbjct: 8 YVCQACGAVYPKWAGRCEACGEWNSIVEEAPSSAPVRVTPGRRLAFVSLPA--------S 59 Query: 68 DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL- 126 PR +TG +E DRVLGGG+VPGS IL+GG+PG GKSTL+LQ LA+ Sbjct: 60 GADAAPPPRIATGIEELDRVLGGGLVPGSVILVGGDPGIGKSTLMLQAAAALARAGGRAL 119 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMVIDSIQVMHMA 185 YV+GEE+++QV +RA RL L L + + + I E + L+VIDSIQ M + Sbjct: 120 YVSGEEAVEQVRLRARRLHLADAPLELAASGHVRDIAATLETARDAALVVIDSIQTMWLD 179 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245 + S+PG+VAQVR L R AK+ G A+V+VGHVTK+G++AGP+VLEH +D + +G Sbjct: 180 SLDSAPGTVAQVRACGFELIRLAKSVGFALVLVGHVTKEGAIAGPRVLEHMVDAVLYFEG 239 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE 305 D +FR LR KNRFGA +E+GVF MT+ GL EV+NPSA+FL+ +GS+V E Sbjct: 240 DRGHQFRILRGVKNRFGATDEIGVFEMTDLGLSEVANPSALFLAERRGNIAGSAVFAGME 299 Query: 306 GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGG 365 G+RP+L+E+QAL+ + +PRR VG + RL +LLAVL GL++A DV++N+ GG Sbjct: 300 GSRPVLLEVQALLAPNAGGSPRRAVVGWDSARLGMLLAVLEARCGLKLAQNDVYLNIAGG 359 Query: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 +++TE +ADLA+ A++S+ ++P+ + V FGEVGL+GEIR VP + R+ EAAK GF Sbjct: 360 LRITEPAADLAVAAALISAATEQPVAANEVFFGEVGLSGEIRQVPQTEARLKEAAKLGFE 419 Query: 426 RAIVP-----AANVPKKAPEGMQIFGVKKLSDALSVF 457 A P N P PEG+++ + LSD + F Sbjct: 420 AACRPRRVARGKNRPSP-PEGLKLEEIGHLSDLVRRF 455 >UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriaceae RepID=C7NB45_LEPBD Length = 452 Score = 356 bits (913), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/433 (39%), Positives = 274/433 (63%), Gaps = 11/433 (2%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE-VRLAASPMVARNERLSGYAGSAGV 60 K K ++C+ECG +W G+C C +W T E + + ++ ++ +S Sbjct: 3 VKKGKTKYICSECGYSSLKWMGKCPNCDSWGTFEEEIDIKSTFKNVESQEVS-------- 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++K+++I +E+ R T F+EFDRVLGGG++ G +LI G+PG GKST LLQ + A Sbjct: 55 --IKKITEIEIEKEFRMVTPFEEFDRVLGGGLIKGEVVLITGSPGIGKSTFLLQLSQEYA 112 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + YV+GEES +Q+ RA R+ + ++NL +L++T+IE+I + +E+PK++VIDSIQ Sbjct: 113 KIGNVFYVSGEESPRQIKQRAERVNVKSENLYILNDTNIEKIESVILKEKPKVVVIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ +V S PGSV Q+RET + AK +A +VGHVTKDG LAGPK+LEH +D Sbjct: 173 TLYSENVNSIPGSVTQIRETTLKIIEIAKKNEIAFYIVGHVTKDGKLAGPKLLEHMVDAV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + ++G+ +S FR +RS KNR+G+ NE+ +F M E G+ EV NPS F+S +E GS + Sbjct: 233 LQIEGEENSYFRIIRSIKNRYGSTNEISIFDMKENGISEVKNPSEFFISDREEKNVGSII 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + ++EG+R L E+Q+L+ PRR G ++ R+ IL AVL R + + +D+++ Sbjct: 293 VPIFEGSRVFLFEVQSLLGTPNFGMPRRTVEGYDKTRVEILSAVLSRSLKVDVNSKDIYI 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N+ GG+ + + S+DLA++ +++SS++ P+ Q + GE+GL GE+R V + R++E Sbjct: 353 NIPGGIDLNDRSSDLAVVFSLLSSIKGIPISQKIAAIGELGLRGEVRKVSFIKNRVTELE 412 Query: 421 KHGFRRAIVPAAN 433 K GF +P ++ Sbjct: 413 KLGFAGVYLPKSH 425 >UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales RepID=D0L455_GORB4 Length = 461 Score = 355 bits (911), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 193/455 (42%), Positives = 277/455 (60%), Gaps = 16/455 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK F C CG +W G+C C W ++ EV + + A +G + +A V Sbjct: 1 MAK-PKSTFRCTACGRQVAKWVGRCPDCGEWGSVDEV----TTLFA-----AGTSATAAV 50 Query: 61 AK---VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 A +++++I TG EFDRVLG GVVPGS IL+ G PG GKSTLLL+T+ Sbjct: 51 APSSPARRITEIDAASSAAVPTGIGEFDRVLGRGVVPGSVILLAGEPGVGKSTLLLETVK 110 Query: 118 KLAQQMKT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 A +T LY+TGEES QV MRA R G +N+ + +E+ + I + +P LM++ Sbjct: 111 HWAGLGRTALYITGEESAGQVRMRAERTGAVHENVYLAAESDLATILGQVDAVRPSLMIV 170 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DS+Q + G V Q+R L AK RG+A+++VGHVTKDG++AGP+ LEH Sbjct: 171 DSVQTVVATGADGVTGGVTQIRAVTTALVSLAKNRGIAVILVGHVTKDGAVAGPRSLEHL 230 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +GD S R +R KNRFG +E+G F + G+ +V++PS IFL + D S Sbjct: 231 VDVVLSFEGDRHSTLRMVRGIKNRFGPADEVGCFEQRDDGIHQVTDPSGIFLHQRDSDVS 290 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGL-QMAD 355 G++ MV +G RPL+ E+Q+L + S MA PRR G++ R+A++LAVL GL Q+A Sbjct: 291 GTATMVTMDGKRPLVGEVQSLANGSQMATPRRAVSGMDSARVAMVLAVLQSRMGLEQIAK 350 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 +++V VGG++VTE +ADLA+ LA+ S++ RP+P + GEVGLAGE+R V + R Sbjct: 351 NEIYVATVGGMRVTEPAADLAIALAVHSAMTKRPVPATTIAIGEVGLAGEVRRVSAVSRR 410 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL 450 I+EA + GFR AI+P +K P+GM+I V L Sbjct: 411 IAEAQRLGFRHAIIPGGT-DEKLPKGMRITRVGDL 444 >UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID=Q04QR6_LEPBJ Length = 459 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 191/463 (41%), Positives = 276/463 (59%), Gaps = 14/463 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEV----RLAASPMVARNERLSGYAG 56 M K R F+C CG DY RW G+C +C WN+I E R A S +R + Y Sbjct: 1 MKKRLTRTFICQSCGQDYSRWAGKCESCGNWNSIVEEIGGERFAPSGGNSRKNK--SYQE 58 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 + +V++ E L R TG KE D VLGGG+VPGS LIGG PG GKSTL+L+ Sbjct: 59 PIPLDRVEE------ESLERMGTGLKELDLVLGGGLVPGSLTLIGGEPGVGKSTLVLEVS 112 Query: 117 CKLAQ-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 L Q K LY++GEES Q+ MRA R+G + NL + SET E I + E +P + Sbjct: 113 RYLTQANKKVLYISGEESPSQIRMRAERMGFRSSNLLLTSETYAENISAMIEGARPTAVF 172 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DSIQ + + + G+V Q+RE L AK G+ I+M GH+TK+G++AGPK+LEH Sbjct: 173 VDSIQTIAREALPNQAGTVTQLRECTQILLETAKRSGIPILMTGHITKEGTIAGPKILEH 232 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +GD + +R LR+ KNRFGAV +L +F M GLREV + ++IF+S G E Sbjct: 233 LVDTVLYFEGDRLNYYRLLRAVKNRFGAVGDLAIFEMFSGGLREVGDRNSIFVSAGAEER 292 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 SGS + V EG+R L VE+QALV + A RR+A G + R+ +L AV+ ++ +++ + Sbjct: 293 SGSVISAVLEGSRALTVEVQALVSKTGFAQARRMAEGPDTRRVILLAAVIEKYIKIKLGE 352 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+F N+ GG+ E + DLA+ +++SS D+PLP+ V GEVGL+GE+R + R Sbjct: 353 CDLFSNLAGGLNADEPALDLAICTSIISSYLDQPLPKGTCVLGEVGLSGEVRSIGQANLR 412 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDALSVF 457 I E A G ++ I+P N+ + +QI G++ L+D +F Sbjct: 413 IKELAGVGMKKVILPEGNLSELVQNTDIQIQGIRSLNDLRLLF 455 >UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepID=C0R005_BRAHW Length = 462 Score = 353 bits (907), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 186/460 (40%), Positives = 278/460 (60%), Gaps = 11/460 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTI---TEVRLAASPMVARNERLSGYAGS 57 MAK FVC+ CG W G+C +C +WN++ TE ++ + ER S S Sbjct: 1 MAKKNNTIFVCDNCGESTINWMGKCPSCGSWNSLKPFTEPSQDSNKSI--RERTS--TSS 56 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 + A + L I + R ST E +RVLGGG+V GS ILIGG PG GKSTLLLQT Sbjct: 57 SDKASLTPLKKIKTNDRTRISTNIDELNRVLGGGIVQGSVILIGGEPGIGKSTLLLQTAS 116 Query: 118 KLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 +A+ K Y TGEESL+Q+ +RA RL L + + SE++ + I ++ P L +ID Sbjct: 117 NIAKNEKVYYFTGEESLEQIKLRADRLTLEDSDFLISSESNCDNIINTLLDDTPSLAIID 176 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ ++ S GS AQ++ A L + AK + + I +VGH+TK+G++AGPK+LEH + Sbjct: 177 SIQTIYSPSTNSIAGSPAQIKNCAWALMQTAKLKNITIFLVGHITKEGTIAGPKILEHIV 236 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG--DEVT 295 DC + +GD +R LR+ KNR+GAV+E+G+F M E+GL EV +PS +F +RG + V Sbjct: 237 DCVLYFEGDDKGIYRILRAVKNRYGAVDEVGIFEMAEKGLMEVKDPSRVF-TRGVNETVF 295 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 +G+ V V EG+R VE +ALV S PRR+ +G +Q RL I++A+L + L +++ Sbjct: 296 AGNVVTPVIEGSRVFCVEQEALVGSSAFGYPRRLTIGYDQYRLLIIIAILEKRAHLNLSN 355 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 QDV++NV G+ V ET++DLA+ +A+ SS+ + + GE+GL+GE+RPV + R Sbjct: 356 QDVYINVANGLNVKETASDLAIAMAIASSMSGISIQRTTAYIGELGLSGEVRPVRFIERR 415 Query: 416 ISEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDAL 454 I E K + + V + K P ++I G+ +S+A+ Sbjct: 416 IKEMQKFSLKEVYISKRAVKEIKNPGDIKIIGIDHISEAV 455 >UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKY5_9FIRM Length = 466 Score = 353 bits (905), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 182/435 (41%), Positives = 266/435 (61%), Gaps = 8/435 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M K F+C+ CGA+ P+W G+C C WN++ E + P R LS +G Sbjct: 1 MNSKTKTKFICHNCGAETPKWMGKCPNCGEWNSLEEKIEESIPKSIRT--LSFQSGKEPT 58 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L+DI +++ R G E DR LGGG+V S IL GG PG GKSTL+LQ Sbjct: 59 S----LTDIEIKDTDRVKLGITELDRPLGGGIVSDSVILWGGEPGIGKSTLILQICDSFT 114 Query: 121 QQMKT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + KT LY +GEES Q+ MRA RL + T+ + +E+++E I ++ P +++IDSI Sbjct: 115 KMGKTVLYCSGEESDIQIKMRAERLSVNTEECFVFAESNLETILAEVDKLHPDMVIIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+ GS Q+R+ A L + AK G+ ++++GHVTK+G++AGP++LEH +D Sbjct: 175 QTTYLPNSSSAMGSPTQIRDCTAILVKMAKESGIIVMIIGHVTKEGNIAGPRILEHMVDV 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV-TSGS 298 L+GD + +FR LR+ KNRFG+ +E G+F M +GL+ + +PS L E SGS Sbjct: 235 VFYLEGDRNYQFRVLRTVKNRFGSTSESGLFVMGRKGLKGIDDPSKYLLKGIQEAPVSGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V EG RP+L+E+QAL HS++A PRR+A G + NRL ILLAVL + G + + DV Sbjct: 295 TVAACMEGLRPILIEVQALTVHSVLAVPRRIASGYDFNRLVILLAVLEKKGKIPFSADDV 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++NV GG K+ ET+ADL++ LA+ S D PL + + GE+GL GEI PV R+ E Sbjct: 355 YLNVAGGYKLKETAADLSVALALFSVKYDIPLKKFCMALGEIGLTGEILPVSKLSLRLKE 414 Query: 419 AAKHGFRRAIVPAAN 433 A K F ++PA N Sbjct: 415 AVKMNFTEFVLPARN 429 >UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus RepID=B5YF80_DICT6 Length = 457 Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 185/460 (40%), Positives = 272/460 (59%), Gaps = 15/460 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVAR--NERLSGYAGSA 58 M+K K FVC CG + RW G+C C +WN+ E+ + R E L Y Sbjct: 1 MSKV-KSKFVCQVCGYESVRWLGRCPNCQSWNSFIEIVEDKGKVDKRVNKEELEVY---- 55 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +L I E R TG FD ++GGG+V GS L+ G PG GKSTLLLQ Sbjct: 56 ------RLDQILNYEPVRLKTGLTGFDYIIGGGIVEGSVTLLAGEPGIGKSTLLLQLAIS 109 Query: 119 LAQQM-KTLYVTGEESLQQVAMRAHRLGLPTD-NLNMLSETSIEQICLIAEEEQPKLMVI 176 L+++ + LY++ EESL QV +R RL +++ +SE IE I E+ L+++ Sbjct: 110 LSKESSRVLYISAEESLSQVGLRLKRLTSKDRLDIDFVSERDIENILPELEKFNYSLIIV 169 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ ++ ++ +SPG+V QVRE + L FAK VA+++VGHVTK+G +AGPK+LEH Sbjct: 170 DSIQTIYSSEFPTSPGNVVQVRECTSKLVDFAKKNNVAVILVGHVTKEGDIAGPKILEHL 229 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + L+G+ R LR KNRFG N+ ++ M E GL EV + SA + + + Sbjct: 230 VDVVLYLEGERYHDLRVLRVVKNRFGPTNDFILYEMKESGLFEVEDISAKMIENRNINVA 289 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS ++ V EGT+PLL+E+QALV + + PRR+A G++ N+L +LLA+L + +D+ Sbjct: 290 GSIIVPVMEGTKPLLIELQALVSKTNTSYPRRIASGVDFNKLVLLLAILEKKLRTNFSDK 349 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DVFVNVVGG+K+ E + DL L A++S+L D+P P D++ GE+GL GE+R VP + R+ Sbjct: 350 DVFVNVVGGIKINEPAVDLGLAFALLSALMDKPFPSDMIAVGEIGLGGEVRTVPHIERRL 409 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 EA K GF +A++P K M I V + + + + Sbjct: 410 KEARKFGFIKALIPKDKKIKLNEYNMNILPVSDIEEGIKL 449 >UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacteria RepID=A1SXY3_PSYIN Length = 470 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 196/475 (41%), Positives = 287/475 (60%), Gaps = 25/475 (5%) Query: 1 MAKAP-KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPM------VARNERLSG 53 MAKA K A+VC++CGA+Y +WQGQC C AWNTITE R A+S V RN+ +G Sbjct: 1 MAKAKTKIAYVCSDCGANYQKWQGQCGECKAWNTITEFREASSTTKSVNAAVTRNKN-AG 59 Query: 54 YAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 Y G+ VQ++S + +E R STG E DRVLGGG+ GS +LI G+PG+GK+TLL Sbjct: 60 YTGALSNG-VQRISGVQIENATRVSTGLSELDRVLGGGITLGSVVLISGDPGSGKTTLLT 118 Query: 114 QTLCKLAQQMKTLYVTGEESLQQVAMRA---HRLGLPTDNLNMLSETS-IEQICLIAEEE 169 + ++Q M TLYVT EESL Q A R +L DN +LS+T IE I E Sbjct: 119 KVAEVMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNF-LLSDTDCIEDIVDQCLEN 177 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAG 229 + ++ DSIQ + + G V QV+ A L R K G+ +++VG V K+ +AG Sbjct: 178 NVRFLIADSIQAFESNQAEGTAGGVTQVKICAKILNRLCKQHGITLILVGQVNKNSQMAG 237 Query: 230 PKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLS 289 P+ L+H ID ++ ++ + D+ R LR+ KNRFG ++G+F MTE+G+ V NPS +FLS Sbjct: 238 PQTLKHIIDTAIHIEVN-DASVRILRADKNRFGDTEQVGIFQMTEKGMFSVDNPSRLFLS 296 Query: 290 RGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHG 349 +E GS++ V+ +G R LL+EIQAL R +G+ +RL+++ AVL +HG Sbjct: 297 GSEEHFEGSAISVIKDGARNLLIEIQALATEVEGEKSIRNCIGISYSRLSLITAVLKKHG 356 Query: 350 GLQMADQDVFVNVVGGVKV--TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR 407 G++ D+ +++VGG+K+ +ETS D+A++ A++SS+ +P+PQD V GE+ L GEIR Sbjct: 357 GIRTY-YDINISLVGGLKMSDSETSTDMAVMAALLSSINSKPVPQDSVFIGEIALTGEIR 415 Query: 408 PVPSGQERISEAAKHGFRRAIVPAANVPKK----APEGMQIF---GVKKLSDALS 455 +P R+ EA HG ++ +PA K +G I +K+L +ALS Sbjct: 416 QIPQIVPRVREALSHGKKQIYIPAVAYHKSMQQFVKKGQSIHPLKNIKELIEALS 470 >UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae RepID=C6JJB8_FUSVA Length = 463 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/436 (39%), Positives = 266/436 (61%), Gaps = 9/436 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTI---TEVRLAASPMVARNERLSGYAGS 57 MAK K +VC+ECG +W G+C C+ W T E+ A +P+V+ S + Sbjct: 1 MAKN-KSFYVCSECGYKSSKWLGKCPQCNEWGTFEEEIEIISAGAPVVS-----SVISVK 54 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 KV SDI +E++ R+ TG +EFDRVLGGG++ G +L+ GNPG GKSTLLLQ Sbjct: 55 ETAEKVYSFSDIKMEDMYRYKTGIEEFDRVLGGGLLQGEVVLVTGNPGIGKSTLLLQVAD 114 Query: 118 KLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 + +Y++GEES QV R RL + +L +++ET + I ++PK++++D Sbjct: 115 RYTSYGTVIYISGEESPSQVKNRGERLKISAKDLFLMAETDVSNIYEYLIAKKPKVVIVD 174 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ ++ + + S PG+ Q+RE + AK ++ +VGH+TKDG +AGPK+LEH + Sbjct: 175 SIQTLYNSSIDSIPGTPTQIRECTLKIIELAKKYNISFFIVGHITKDGKVAGPKMLEHMV 234 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D +G+ +R LRS KNRFG+ NEL VF+M E G++E+ N S FLS DE +G Sbjct: 235 DAVFNFEGEEGLFYRILRSTKNRFGSTNELAVFSMEEDGMKEIKNSSEYFLSERDEKNAG 294 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S V+ V EGT+ L+EIQ L+ S + P+R+ G ++NR+ IL A+ + + +A +D Sbjct: 295 SMVVPVLEGTKVFLLEIQTLLTESNIGIPKRIVQGFDRNRIQILTAIAEKKMHMSLAMKD 354 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 +FVN+ GG+ + + +ADLA+L++++S R + Q + GE+GL GEIR V ++R+ Sbjct: 355 MFVNIPGGLSIEDPAADLAVLISLLSVYRGVEISQKIAAIGELGLRGEIRKVFFIEKRLR 414 Query: 418 EAAKHGFRRAIVPAAN 433 E K GF+ +P AN Sbjct: 415 ELEKLGFKGVYIPEAN 430 >UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD3_ELUMP Length = 454 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/423 (42%), Positives = 263/423 (62%), Gaps = 7/423 (1%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K FVC CG P+W GQC C WNT+ E AA A + ++ +++ Sbjct: 4 KTVFVCQSCGFKAPKWTGQCPDCSEWNTMVEEVEAAPSKTASKSKSF----TSFSSEIIN 59 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 LSD R TG E DR+LGGG+V G IL+ G PG GKSTL+LQT L++ K Sbjct: 60 LSDTKTLREERELTGISELDRLLGGGIVKGQLILLAGAPGIGKSTLMLQTAASLSKGKKV 119 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185 LY++GEESL Q++ RA RLG+ N+ +LSET+++ I ++ +P++++IDSIQ ++ Sbjct: 120 LYISGEESLNQISSRALRLGVEGKNIFLLSETNMQNIIEALDKVKPEVLIIDSIQTVYHP 179 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245 + SSPG++ QVRE AA L R K +G + ++GHVTKDG LAGPKVLEH +D + D Sbjct: 180 EFSSSPGTIGQVRECAAELLRLCKPKGTVLFILGHVTKDGELAGPKVLEHMVDTVLYFDT 239 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL--SRGDEVTSGSSVMVV 303 + D+ R LR HKNRFG+ +E+G+F MT GL V + S F SR + G + + Sbjct: 240 EKDNILRLLRPHKNRFGSTHEIGLFQMTGHGLTPVEDASVYFAGNSRNKPLI-GRAYSIA 298 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EGTRP+L E+QALV + PRRV+ G++ NR +LLA + ++ G+ + ++D+++++ Sbjct: 299 LEGTRPILTEVQALVVPTRYPFPRRVSTGIDLNRCQVLLASIEKNAGISLENKDIYISLA 358 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GGVK+ + + DLAL A++SS++D P+ V EVG+ G + VP RI+EA + G Sbjct: 359 GGVKIKDPALDLALSAAVISSVKDIPISNTDVFLAEVGILGPLAKVPLADRRIAEAGRLG 418 Query: 424 FRR 426 F+R Sbjct: 419 FKR 421 >UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteria RepID=RADA_CHLMU Length = 455 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 190/453 (41%), Positives = 282/453 (62%), Gaps = 12/453 (2%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K + C+ECG+ P+W GQC C WNT+ E + +S + + S Y S+ Sbjct: 7 KTQWACSECGSYSPKWLGQCPGCFQWNTLVE-EIHSSKL-----KTSSYPLSSTTPV--P 58 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MK 124 L+ + +E R ST K ++R+LGGG V GS L+GG PG GKSTLLLQ + A+Q K Sbjct: 59 LNTVKFQEEIRISTRSKGWNRLLGGGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQGYK 118 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 LYV GEES+ Q ++RA RL + + N+ + ET++E I + P +++IDSIQ++ Sbjct: 119 VLYVCGEESVSQTSLRAQRLQISSSNIFLFPETNLEDIKQQISDLAPDILIIDSIQIIFS 178 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 + S+PGSVAQVRET A L AK + + ++GHVTK G +AGP++LEH +D + + Sbjct: 179 PSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFE 238 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 G+A + +R +RS KNRFG NEL + +M GL EV NPS FL T+GS+++ + Sbjct: 239 GNAHTNYRMIRSVKNRFGPTNELLILSMQTDGLHEVENPSGFFLQEKVVETTGSTIIPIV 298 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EG+ LLVE+QALV S +NP R G + NR ++LLAVL + +++ DVF+++ G Sbjct: 299 EGSETLLVEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAG 358 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G+K+T+ SADL +L++VSSL +R LP++ GE+GL GEIR V + RI E+ GF Sbjct: 359 GLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIRHVTHIEHRIKESIIMGF 418 Query: 425 RRAIVPAANV---PKKAPEGMQIFGVKKLSDAL 454 + ++P+ + PK+ + + I GVK + DA+ Sbjct: 419 KGIVMPSGQIKGLPKEYLDQIDIIGVKTIKDAV 451 >UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8K3_9FIRM Length = 469 Score = 350 bits (899), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 181/426 (42%), Positives = 267/426 (62%), Gaps = 8/426 (1%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K+ FVC+ECG + P++ G+C C WNT +E +V N + S + KV Sbjct: 18 KKIFVCSECGYESPKYWGKCPDCGNWNTFSEFSKKELDLV--NSKSSVFT-----PKVTN 70 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK- 124 L D+ +E RF+T E D VLGGG+V S +L+GG PG GKSTLL+QT ++ K Sbjct: 71 LKDVDTKEDMRFTTSISELDNVLGGGIVASSLVLVGGEPGIGKSTLLMQTAHNVSMIGKR 130 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 LY + EESL Q+ +R RL L ++ +LS T IEQI A+E + L++IDSIQ + Sbjct: 131 VLYASSEESLSQLKLRLDRLDLKGSDILVLSNTDIEQIIESAKENKADLLIIDSIQTVRS 190 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 A++ S+PG++ QVRE L FAK ++ +VGH+TK G++AGPK +EH +D + + Sbjct: 191 ANIPSAPGTITQVRECTNLLMNFAKATNTSVFIVGHITKQGTIAGPKTIEHMVDTVMYFE 250 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 +++S R LR KNRFG+ E+GVF MT +GL V+NPS + L + + GS + + Sbjct: 251 SESNSSLRILRLSKNRFGSSEEIGVFEMTRKGLECVTNPSKLLLEDRENRSYGSVICSIM 310 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EG R +L+EIQAL S PRRV+ G E NR +LAV+ + +++ DV++NVVG Sbjct: 311 EGNRSVLIEIQALAMMSSFQVPRRVSTGFEYNRFVQILAVIEKMTNVKIHSTDVYLNVVG 370 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 GV+V ET++DLA+ A++SS+ + +P + ++ GEVGL GEIR + + +RI EA GF Sbjct: 371 GVRVKETASDLAVACAVISSMLKKEIPINTIIIGEVGLCGEIRKINNIFKRIKEANSLGF 430 Query: 425 RRAIVP 430 ++AI+P Sbjct: 431 KKAIIP 436 >UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A7NKT5_ROSCS Length = 464 Score = 350 bits (898), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 204/454 (44%), Positives = 290/454 (63%), Gaps = 15/454 (3%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTI---TEVRLAASPMVARNERLSGYAGSAGVAK 62 + FVC +CG+ RW G+C C W+++ TE R AAS A SG+ G + Sbjct: 5 RTVFVCQQCGSQQSRWMGRCPDCGTWDSLVEQTERRDAASRSRAIT---SGFQG-----R 56 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 L D+++ R +EF VLGGG+VPGS +LIGG PG GKS+LLLQ A Sbjct: 57 PVGLRDVAIGGFTRLPVLGREFVGVLGGGLVPGSVVLIGGEPGIGKSSLLLQVAAHFADH 116 Query: 123 M-KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 + LYV+ EES+QQ+ +RA R+GL + L + SET++ I +P+L+V+DSIQ Sbjct: 117 VGPALYVSAEESVQQIKLRAARMGLEPERLLVYSETNLNAILDQVAAIKPQLVVVDSIQT 176 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 +++ ++ S+ GSV+QVRE A L R AK + + +VGHVTK+G++AGP+VLEH +D + Sbjct: 177 VYLEELSSAAGSVSQVREGALRLLRVAKEHAIPMFLVGHVTKEGAIAGPRVLEHIVDVVL 236 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 L+GD ++R LR KNRFG+ +E+GVF MT GLREV NPS FLS GS+V Sbjct: 237 YLEGDRFHQYRLLRGVKNRFGSTDEVGVFEMTAHGLREVPNPSQAFLSERTVNAPGSAVA 296 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 V EGTRP+LVE+QAL HS A PRR A G + NRL +L+AVL + GL + +QDV+VN Sbjct: 297 VTMEGTRPILVEVQALTAHSAGAQPRRTANGFDMNRLLMLVAVLTKRVGLPLFNQDVYVN 356 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 +VGG+++ E + DLA+ +A+ SS R+ + QDL + GEVGLAGE+R + R++EA+ Sbjct: 357 IVGGLRIDEPAVDLAVAVAIASSFRNMRVRQDLAMVGEVGLAGELRSAGQLERRLTEASG 416 Query: 422 HGFRRAIVP-AANVPKKAPEGMQIFGVKKLSDAL 454 GF A+ P A++P EG+ + + L+DA+ Sbjct: 417 LGFTCALCPETAHLP--CIEGLGVITARALADAI 448 >UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID=Q1IZ25_DEIGD Length = 449 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 202/431 (46%), Positives = 263/431 (61%), Gaps = 7/431 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK R +VC CG + G+C C AWN+ E AA P R GY G Sbjct: 1 MAKVTTR-YVCTSCGYQSAKPLGRCPNCQAWNSFEEELPAAVPGKTRMGGSGGYGGVV-G 58 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K+ LS + E PR +G E DRVLGGG+V GS LIGG PG GKSTLLLQ +LA Sbjct: 59 GKLTPLSTVGRREEPRLPSGIPELDRVLGGGLVAGSVTLIGGEPGIGKSTLLLQVADRLA 118 Query: 121 QQMKT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + +T LYV GEESL+Q+ +RA RL + T + + +T E I + +E +P L ++DSI Sbjct: 119 RNGQTVLYVAGEESLEQIRLRADRLNV-TAEIQLTRDTRAEHIAALMQEHRPALCIVDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + + +PG VAQVRE A LTR AK G A V+VGHVTK+G++AGPKV+EH +D Sbjct: 178 QTVTV-EAEGAPGGVAQVREGTALLTRAAKETGTATVLVGHVTKEGTVAGPKVMEHIVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 +V L+ FR LRS KNRFG ELGVF M +GL V NPSA FL+ GS Sbjct: 237 TVFLE--TVGAFRLLRSVKNRFGQAGELGVFEMRGEGLVAVENPSAAFLAERPVGVPGSV 294 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V +G RP+L+E+QAL + NPRRV VGL+ R+ ++LAVL R L + DV+ Sbjct: 295 VAATIDGQRPMLLEVQALAAKTPYPNPRRVVVGLDPRRVDVVLAVLERRLDLTLGGLDVY 354 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VN+ GG+KV + DL + LA+ S++ R LP ++ VFGEVGLAGE+R R EA Sbjct: 355 VNLAGGLKVPDPGLDLPVALAVYSAVVGRALPGNVAVFGEVGLAGEVRSTQGALRRAEEA 414 Query: 420 AKHGFRRAIVP 430 A+ G+R IVP Sbjct: 415 ARAGYRSLIVP 425 >UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales RepID=D1BVG5_XYLCX Length = 498 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 202/470 (42%), Positives = 283/470 (60%), Gaps = 24/470 (5%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 AKA + A+ C ECG +W G+C C AW T+ E AAS R ++ +A Sbjct: 26 AKAARPAYRCTECGWAAAKWVGRCGECQAWGTVAEDGPAASG--PRTVAVTPVRSAA--- 80 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ 121 + +++I +E TG E DRVLGGG+VPG+ +L+ G PG GKSTLLL+ + A+ Sbjct: 81 --RPIAEIDVESARSAPTGVDELDRVLGGGLVPGAVVLMAGEPGVGKSTLLLEVASQYAR 138 Query: 122 --------------QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 + LYVTGEES QV +RA R+G L + +ET + + E Sbjct: 139 GVGAPKGGLRAVGGERTVLYVTGEESAGQVRLRAERVGALAPTLLLAAETDLGTVLGHVE 198 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 P L+V+DS+Q + A+V G V+QVRE AA L AK R V +++VGHVTKDG++ Sbjct: 199 ATSPALLVVDSVQTIASAEVDGVAGGVSQVREVAAALIAVAKERQVPVLLVGHVTKDGTV 258 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+ LEH +D +GD SR R +R+ KNRFG +E+G F +TE G+ +++PS +F Sbjct: 259 AGPRTLEHLVDVVCQFEGDRHSRLRMVRAVKNRFGPTDEVGCFELTETGITGLTDPSGLF 318 Query: 288 LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHR 347 LS GS V V EG RPL +EIQ+LV S +ANPRR G+E +RLA +LAVLHR Sbjct: 319 LSHLGAGVPGSCVTVTLEGRRPLALEIQSLVAPSPLANPRRTTNGMESSRLAQILAVLHR 378 Query: 348 HGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR 407 H L++ADQDV+++ VGG + E +ADLA LA+VS+ LP V FGEVGLAG++R Sbjct: 379 HASLRLADQDVYLSTVGGARAGEPAADLAAALAIVSARTGDALPAGTVAFGEVGLAGDVR 438 Query: 408 PVPSGQERISEAAKHGFRRAIVPA---ANVPKKAPEGMQIFGVKKLSDAL 454 PV R+SEAA+ GF RA+VP A + ++ G+++ +++A+ Sbjct: 439 PVTGIDRRLSEAARLGFVRAVVPPGTRAGLSARSAAGLELLESAHVAEAV 488 >UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales RepID=Q487B6_COLP3 Length = 462 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 187/465 (40%), Positives = 280/465 (60%), Gaps = 12/465 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL--AASPMVARNERLSGYAGSA 58 M KA K FVC +CG ++ RWQGQC C AWNT+ E+++ AAS A +G Sbjct: 1 MVKAAKIEFVCTDCGMNHTRWQGQCR-CGAWNTLVEMKIPKAASKNAATRTTSTGGYAGL 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +K+++I + + STG E DRVL GGV GS +I G+PGAGK+TLL + + Sbjct: 60 TGGGSKKINEIESIDAEKRSTGIGELDRVLCGGVTTGSVNIISGDPGAGKTTLLSDLVAR 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTD--NLNMLSETSIEQICLIAEEEQPKLMVI 176 +++ +LY T EESL Q R HRL L D NL +L+ETS+E I ++ + K VI Sbjct: 120 MSKTHASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLLAETSVEAIIDELDKNKIKFAVI 179 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ + + SPGS +QV+ +A LT++ K V + ++ HV K+ +AGP+ L H Sbjct: 180 DSIQAVVTENANGSPGSPSQVKSSAQSLTQYCKQNNVTMFIIAHVNKNNEIAGPQTLVHI 239 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +D + D + RTLR++KNRFG ++ +G+F M E+G+ V NPS IFLS + Sbjct: 240 VDALLHIDTN-DGQIRTLRANKNRFGDIDTVGIFKMCERGMLSVDNPSEIFLSGSSTESP 298 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS++ + +G R LL+EIQ L + P+RV VGL NR+ +L +L +H ++ Sbjct: 299 GSTITCIRKGNRNLLLEIQCLTTETEAEFPQRVCVGLNMNRIKMLTGILRKHTKTKIF-H 357 Query: 357 DVFVNVVGGVKV--TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D F N+VGG+K+ +ET DLAL+ A++SSL D +P++ + GE+ L G++RP+ SG Sbjct: 358 DTFFNIVGGLKIDESETCIDLALVTALLSSLNDFVIPRNTCIMGELSLNGDVRPIDSGVP 417 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGM--QIFGVKKLSDALSVF 457 R+ EAA+HGF +P N K+ EG+ I VK + + + + Sbjct: 418 RVKEAAQHGFTEIFIPYRNY-HKSMEGLGANIKAVKTIHELIELI 461 >UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A5FVJ6_ACICJ Length = 466 Score = 346 bits (888), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 214/465 (46%), Positives = 293/465 (63%), Gaps = 27/465 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ R FVCNECGA P+W G+C AC AWNT+ + + G+ Sbjct: 1 MAKSATR-FVCNECGAVAPKWAGRCEACGAWNTLEPQAVVPT-------------GTGRK 46 Query: 61 AKVQKLSDISLEEL-------PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 A VQ I L PR G +EFDRVLGGG+VP SAIL+GG+PG GKSTLLL Sbjct: 47 AAVQAGRGIDFVGLAGETPPPPRIPLGIEEFDRVLGGGMVPASAILVGGDPGIGKSTLLL 106 Query: 114 QTLCKLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQIC-LIAEEEQP 171 Q +LA + LYV+GEES+ Q+ +RA RL L T +N+ S T + I + E Sbjct: 107 QAAARLAASGRRVLYVSGEESVAQIRLRAERLDLKTAPVNLASATVLADILGSLRAERDA 166 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 L+VIDSIQ + V+S+PG+V+QVR A L + AKT+G A+++VGHVTK+G+LAGP+ Sbjct: 167 ALVVIDSIQTIWDETVESAPGTVSQVRANAFALIQAAKTQGFALMLVGHVTKEGALAGPR 226 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG 291 VLEH +D + +GD +FR LR KNRFGA +E+GVF MT +GL EV+NPSA+FL+ Sbjct: 227 VLEHMVDVVLHFEGDRGHQFRILRGAKNRFGATDEIGVFEMTGRGLAEVANPSALFLAER 286 Query: 292 DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGL 351 +GS+V EG+RP+L+E+QAL+ + + RR +G +Q RL++LLAVL GL Sbjct: 287 HGNVTGSAVFAGLEGSRPVLMEVQALLSANGAGSARRSVIGWDQGRLSMLLAVLDARCGL 346 Query: 352 QMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 ++ DV++NV GG++V+E +ADLA+ A++S+ P + V FGE+GL+GE+R V Sbjct: 347 KLGGHDVYLNVAGGLRVSEPAADLAVAAALISAASGVPADPETVFFGEIGLSGELRQVAQ 406 Query: 412 GQERISEAAKHGFRRAIVP---AANVPK-KAPEGMQIFGVKKLSD 452 + R+ EAAK GF RA +P A + APEGM + LSD Sbjct: 407 VELRLKEAAKLGFGRAALPRRVAGGTRRLSAPEGMVLAEYGHLSD 451 >UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD6_9BACT Length = 440 Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 183/424 (43%), Positives = 264/424 (62%), Gaps = 6/424 (1%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K + C CG +W GQC C+ WN+ E ++ + +++ + + + V+ Sbjct: 5 KTVYTCKNCGYTSYQWIGQCPNCNEWNSFVEDVIS----LKESKKTESSSSKSHIEPVKL 60 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 S S R S+G EFDRVLGGG VPG +L+ G PG GKST+L + + K + +K Sbjct: 61 SSVSSSVPPRRVSSGIGEFDRVLGGGFVPGQVVLLAGEPGIGKSTILTE-IAKNLKDLKV 119 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQIC-LIAEEEQPKLMVIDSIQVMHM 184 LYV GEES+ Q+ +R R+G +NL +L ET+++ I I E+++ L+++DS+Q + Sbjct: 120 LYVCGEESVDQIKIRVSRMGYNAENLLVLPETNVDIIVDNIDEKKEIGLVIVDSVQTLFS 179 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 ++ SPGS+ QVR + LT AK + IV+VGHVTK G +AGPKVLEH +D + L+ Sbjct: 180 EELLGSPGSLVQVRGCSQILTNTAKKTNIPIVLVGHVTKGGVVAGPKVLEHIVDTILYLE 239 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 GD+ FR LR+ KNRFGAV+E+G+F M + G+REV NPS +FL + + GS V VV Sbjct: 240 GDSQHLFRILRTSKNRFGAVSEVGIFEMVDNGIREVKNPSELFLKQRLLKSPGSCVTVVM 299 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EG RPLL EIQAL + PRR + G RL +L+AVL + GL + + DV+VNV G Sbjct: 300 EGNRPLLFEIQALTVPTSFGYPRRTSSGFSNTRLQVLIAVLEKRAGLSLNNYDVYVNVAG 359 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G KV+E + DLA+ LA+ SSL ++P+ +D+ FGE GL GE+R V +R+ EA K G+ Sbjct: 360 GFKVSEYATDLAVCLAIASSLINKPIKEDVAAFGECGLNGELRQVTYQDKRMEEARKMGY 419 Query: 425 RRAI 428 + I Sbjct: 420 EKII 423 >UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chromatophora RepID=B1X477_PAUCH Length = 470 Score = 343 bits (879), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 189/436 (43%), Positives = 268/436 (61%), Gaps = 18/436 (4%) Query: 8 AFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLS 67 ++C CGA ++ G+C C+ W++ AS R +L +AK K Sbjct: 7 TYICQNCGAQSRQFFGRCPRCNNWDSFVT---QASSSNHRATKLYEEISDLPIAKYSKPI 63 Query: 68 DISLEEL--PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 D ++EL R S+G+ EFDRVLGGG VPGS +L+GG PG GKSTLLLQ+ +++ Sbjct: 64 D-QVKELFVERLSSGYNEFDRVLGGGFVPGSLVLVGGEPGIGKSTLLLQSAMIMSRYSSI 122 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE-----------QPKLM 174 LYV+ EES QQV +R RL + N E Q+ L+AE E +P + Sbjct: 123 LYVSAEESAQQVKLRWRRLNECKNLTNFHQENKTSQLHLMAETELEIILQELQSFRPAVA 182 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDSIQ ++ + + S+PGS++QVRE + L + AK +G AI++VGHVTK+G+ AGPKVLE Sbjct: 183 VIDSIQAIYTSGLSSAPGSLSQVRECSLALQKLAKQQGTAILLVGHVTKEGTFAGPKVLE 242 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +GD R LR+ KNRFGA ELGVF M QGL E++NP IFL R ++ Sbjct: 243 HLVDAVITFEGDRFGNNRLLRAIKNRFGANYELGVFEMGNQGLVELTNPFEIFLGR-NKA 301 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 T+G + +V +EGTRPLLVE+QAL++ + NPRR+ +G+ NRL +LAVL +H G +++ Sbjct: 302 TTGVATIVAYEGTRPLLVEVQALINTANYGNPRRITIGISTNRLHQILAVLEKHMGFRLS 361 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D ++ V GGV V E +ADL A+V+S LP V GE+GL+G++RPV Sbjct: 362 SFDCYLAVAGGVTVQEPAADLGAAAAIVASYNTLILPPKTVFIGELGLSGKLRPVTQIPL 421 Query: 415 RISEAAKHGFRRAIVP 430 R+ E A+ GF + ++P Sbjct: 422 RLRECARLGFDKVVMP 437 >UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312A2 Length = 466 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 202/455 (44%), Positives = 276/455 (60%), Gaps = 20/455 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE------VRLAASPMVARNERLSGY 54 MA+ P VC++CG + RW G+C C AWNT+ E A + G Sbjct: 1 MAR-PTTVHVCSDCGHEALRWAGRCPGCGAWNTLVEEVRSGGSNGAGGAGRGARAGVGGS 59 Query: 55 AGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 G VA V +L ++ E+ R TG E DRVLGGG+VPGS +LIGG+PG GKSTL Sbjct: 60 RGGTAVAPV-RLGEVQASEVERLPTGIGELDRVLGGGIVPGSLVLIGGSPGIGKSTLTTM 118 Query: 115 TLCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKL 173 + L KTLYV+ EES Q+ +RA RL + +++ET + + E E+P + Sbjct: 119 AVANLTGAGRKTLYVSAEESAAQIKLRAERLPGAALEIPVIAETDLGAVLATLERERPDV 178 Query: 174 MVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL 233 VIDS+Q +H A++ +PGSV QVRE A + R AK +A+++VGHVTK+G+LAGP+VL Sbjct: 179 CVIDSVQTLHAAELTGAPGSVGQVREVAGEIMRVAKQHRIAVLLVGHVTKEGALAGPRVL 238 Query: 234 EHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE 293 EH +DC + +G+ + +RTLR+ KNRFG+ +E GVF M + GL EV + SA F+ Sbjct: 239 EHLVDCVLQFEGERERTYRTLRALKNRFGSTSEAGVFEMRQGGLVEVLDASARFVGEATH 298 Query: 294 VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM 353 GS V+ EG+RPLLVE+QALV S + PRRV G+++NRLA++LAVL RH G+ + Sbjct: 299 -APGSVVLCAMEGSRPLLVEVQALVSPSELVPPRRVVSGIDRNRLALVLAVLTRHAGVAV 357 Query: 354 ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPL-------PQD---LVVFGEVGLA 403 DVFVNVVGGV+V E ADLA+ LA+ S+ R L +D L FGE+GL Sbjct: 358 GSADVFVNVVGGVRVDEPGADLAVALAVASAARGVALRGGNGADGEDGPPLACFGELGLT 417 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA 438 GE+R V + R +EAAK G + P A ++A Sbjct: 418 GELRSVAHPERRTAEAAKFGLGTIVTPEAGTLRRA 452 >UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilonproteobacteria RepID=RADA_HELPJ Length = 448 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 175/426 (41%), Positives = 258/426 (60%), Gaps = 13/426 (3%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK--- 65 F C CG P+W G+C C+AW + E+ ++ A + +VQK Sbjct: 8 FECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLN--------ALKKPLPQVQKSVS 59 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMK 124 +++I EE+ +FS+ E D VLGGG+ G L+GG+PG GKSTLLL+ LA+ Q K Sbjct: 60 IAEIEHEEVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQK 119 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 LYV+GEESL Q+ MRA RL + L +L+E + I E E VIDSIQ ++ Sbjct: 120 VLYVSGEESLSQIKMRATRLDCIEEELYLLNEINWPVIKANMESENYFACVIDSIQTLYS 179 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 ++ S+PGS++QVRE L R AKTR +AI ++GH+TK+GS+AGP+VLEH +D + + Sbjct: 180 PEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFE 239 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 GD R LRS KNRFG +E+G+F M EQGL S++F S+ +E GS++ + Sbjct: 240 GDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSK-EEPMEGSAITITL 298 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EG+R L++EIQALV P+R+A G + NRL +L+A+L + + + DVF+NV G Sbjct: 299 EGSRALILEIQALVSECSFGAPKRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSG 358 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G+K++E + DLA++ +++SS ++R + GEV L G I P+ R+ E +GF Sbjct: 359 GIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRILEAPNLNARLKEMENYGF 418 Query: 425 RRAIVP 430 +AI+P Sbjct: 419 LKAILP 424 >UniRef50_C7I4G6 DNA repair protein radA n=3 Tax=Bacteria RepID=C7I4G6_THIIN Length = 520 Score = 338 bits (866), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 179/291 (61%), Positives = 224/291 (76%), Gaps = 3/291 (1%) Query: 173 LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 + VIDSIQ ++ + S+PGSV+QVRE AA LTR AK G+ +V+VGHVTK+G+LAGP+V Sbjct: 229 IAVIDSIQTVYTEALSSAPGSVSQVRECAAQLTRAAKASGITLVLVGHVTKEGALAGPRV 288 Query: 233 LEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD 292 LEH +D + +GD SRFR +R+ KNRFGAVNELGVFAMTE GL+ VSNPSAIFLS Sbjct: 289 LEHMVDTVLYFEGDTQSRFRLIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLSTHA 348 Query: 293 EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQ 352 E G+ V+ EGTRPLLVE+QALVD++ +PRR++VGL+ RLA+LLAVLHRH G+ Sbjct: 349 EPVPGTCVLATLEGTRPLLVEVQALVDNAAAPSPRRLSVGLDAARLAMLLAVLHRHAGVA 408 Query: 353 MADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 DQDVFVN VGGV++TE +ADLA+LLA+ SSLR+RPLP+ L+ FGEVGLAGEIRP P G Sbjct: 409 SGDQDVFVNAVGGVRITEPAADLAVLLAIQSSLRNRPLPRGLLAFGEVGLAGEIRPAPRG 468 Query: 413 QERISEAAKHGFRRAIVPAANVPK---KAPEGMQIFGVKKLSDALSVFDDL 460 QER+ EAAK GF AI+PAAN PK K EG+++ V ++ +AL V L Sbjct: 469 QERLREAAKLGFSAAIIPAANAPKGAGKQFEGLELHPVSRIEEALDVVRGL 519 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 14/170 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL----AASPMVARNERLSGYAG 56 MAK P+ ++C+ECG +WQGQC C AWNT+ E AA P + +AG Sbjct: 1 MAK-PQTVYICSECGGKSAKWQGQCPHCQAWNTLVETAERSTDAARPGARHGAAAAQFAG 59 Query: 57 SAGVAKVQK------LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKST 110 G+ L+++ E ++G E DRVLGGG+VPG +L+GG+PG GKST Sbjct: 60 RGGL---TAASGPVLLTEVQAERHAHRTSGIDELDRVLGGGLVPGGVLLLGGDPGIGKST 116 Query: 111 LLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE 160 LLLQ L L+ ++ LY++GEES QVA+RA RLGL + +++ET +E Sbjct: 117 LLLQVLANLSAELPVLYISGEESAAQVALRAQRLGLKDAPVRLMAETQLE 166 >UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales RepID=B9KHP2_ANAMF Length = 456 Score = 337 bits (865), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 177/435 (40%), Positives = 266/435 (61%), Gaps = 9/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M + K + C CG RW G+C AC AW++I E + AR ++ Sbjct: 5 MWVSTKVIYACQTCGNSSHRWTGRCVACGAWDSIVEEVAPKNKHTARTQQKEP------- 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 V + S+E + R G E DRVLGGG+V GS+ILIGG PG GKSTL+LQ LA Sbjct: 58 PLVMPICGSSVEPVHRLCVGNDELDRVLGGGIVAGSSILIGGEPGIGKSTLMLQVFASLA 117 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 Q LYV+GEES+ Q+ RA RL + + +++ +S+ + A + +VIDSI Sbjct: 118 GQSHSCLYVSGEESVAQIRARATRLNVSEPQIKLVATSSLSSVLNAACADNFAFLVIDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q MH ++ SSPG+V QVR A L AK R + + ++G +TKDG++AGPK LEH +D Sbjct: 178 QTMHDEEIPSSPGTVLQVRMCAHKLIMLAKQRNIGLFLLGQITKDGAIAGPKTLEHLVDT 237 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD-EVTSGS 298 + +G ++ R LR+ KNRFG NE+GVF M+ GL V +PS +FL + + +G+ Sbjct: 238 VLYFEGSNGNQLRILRTIKNRFGPANEMGVFEMSGSGLLPVQDPSMLFLGQSPRKGITGN 297 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 V EG+RP+LVE+Q+L+ ++ +PRR VG + NRLA+++AVL+ + +AD++V Sbjct: 298 VVFAGMEGSRPILVEVQSLIANTYSPSPRRAVVGWDINRLAMVVAVLNARCDMPLADKEV 357 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++++ GG+K+ E ++DLA+ +++SS+ P P V+FGEV L+GEIR V + R+ E Sbjct: 358 YLSIAGGLKICEPASDLAIAASLMSSITRSPTPASTVIFGEVALSGEIRSVANVGPRLRE 417 Query: 419 AAKHGFRRAIVPAAN 433 A K GF++AI P+ + Sbjct: 418 ACKLGFKQAIAPSGS 432 >UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio RepID=B8J0Q7_DESDA Length = 458 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 184/435 (42%), Positives = 261/435 (60%), Gaps = 10/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + ++C+ CGA +W+GQC CH WNT+ A S R A V Sbjct: 1 MAKL-REIYICSSCGAQTMQWRGQCPGCHEWNTLEASVQARSSGKTRTSLGDSSASGRPV 59 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A Q + D E + +G + DRVLG G+VPG+AIL+GG PG GKSTLLLQ +A Sbjct: 60 ALCQ-VEDAGHEP---YGSGLQALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGLVA 115 Query: 121 QQMKT-----LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 QM + LY +GEESL Q+ RA RLG+ NL L+ + +E + A + P L+V Sbjct: 116 AQMASAGRPVLYASGEESLPQIKGRAERLGMLDPNLLALATSRVEDVVEAANAQNPALLV 175 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DS+Q + + + PG+V+QVR A L + G +++VGHVTKDG LAGP++LEH Sbjct: 176 VDSVQTLTSLEAEGLPGNVSQVRAVATSLLELCRRLGCTLILVGHVTKDGVLAGPRLLEH 235 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + L+GD FR LR KNRFG EL VF M ++G+ V +PS FL + D Sbjct: 236 MVDTVISLEGDRRQMFRLLRVFKNRFGPNEELLVFRMGQRGMEVVDDPSTFFLGQRDASL 295 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 SG++V++ +G RPL VE+QALV + ++ PRR A+G + RL +LLAVL + L A Sbjct: 296 SGTAVVMAVDGQRPLAVEVQALVSRTFLSIPRRAALGFDVGRLHLLLAVLEKRLKLNFAQ 355 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D++ V GG+K+ E DLAL+ A++SS D PLP+ V++GEV L G++RPV + R Sbjct: 356 VDIYAKVGGGMKLNEPGLDLALVAAVLSSYYDVPLPEKSVLWGEVDLNGQVRPVAAQDLR 415 Query: 416 ISEAAKHGFRRAIVP 430 +++A + GF + P Sbjct: 416 LTQARRLGFDPIVHP 430 >UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1c RepID=D1V789_9ACTO Length = 507 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 205/471 (43%), Positives = 280/471 (59%), Gaps = 30/471 (6%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV----- 63 F C+ECGA+ RW G+C C AW+T+ + A P R + AGS A Sbjct: 46 FRCSECGAESIRWAGRCPRCQAWSTLEAQK--APP------RRAAVAGSGATAPATVTTP 97 Query: 64 -QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 + ++++ R STG E DRVLGGGVVPG+ IL+ G PG GKSTLLL+ + AQ Sbjct: 98 AKPVTEVDPSPAARRSTGVDELDRVLGGGVVPGAVILLAGEPGVGKSTLLLEVAARSAQA 157 Query: 123 -MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 + L VTGEES+ QV +RA R G +L + +ET + + EE QP L+V+DS+Q Sbjct: 158 GHRALVVTGEESVAQVRLRAGRTGTLHADLWLAAETDLGALLGHVEEVQPTLLVVDSVQT 217 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 + A V G V QVRE AA L R AK G+A ++VGHVTKDGS+AGP++LEH +D + Sbjct: 218 ISAAGVDGVAGGVTQVREVAAALIRAAKALGLATILVGHVTKDGSVAGPRLLEHLVDVVL 277 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS--GSS 299 +GD + R +RS KNR+G +E+G F M E G+ +++PS +FLSRG ++ G Sbjct: 278 HFEGDQQTALRMIRSVKNRYGPTDEVGCFEMNENGIWGIADPSGLFLSRGATASAVPGVC 337 Query: 300 VMVVWEGTRPLLVEIQALV----------DHSMMANPRRVAVGLEQNRLAILLAVLHRHG 349 V V+ EG RPL+ E+QALV PRR GL+ +R+A++ AVL + Sbjct: 338 VTVMVEGRRPLVAEVQALVAPQSYGRGGAGAPAPPPPRRAVSGLDGSRVAMITAVLQKRS 397 Query: 350 GLQM-ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 G M D+F VGGVK+ E +ADLA+ LAMVSS +DR +P DL+ GEVGL GEIR Sbjct: 398 GFGMLGGADIFTASVGGVKLHEPAADLAVALAMVSSAQDRGVPSDLIALGEVGLTGEIRS 457 Query: 409 VPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 V + R++ AA+ GFRRA+VP + PEGM + L+ A++ D Sbjct: 458 VSGIERRLAAAARLGFRRALVP--RLSGLVPEGMTVTEATDLNAAIANMYD 506 >UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibrionales RepID=B8DKJ9_DESVM Length = 492 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 181/451 (40%), Positives = 262/451 (58%), Gaps = 11/451 (2%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 + +VC CGA P+W+GQC AC WNT+ L +P + G + ++ Q Sbjct: 4 RETYVCTACGARAPQWRGQCPACKEWNTL---ELTVAPREGKAGARPGASSVGAQSRAQP 60 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L D++ F +G DRVLG G+VPG+AIL+GG PG GKSTLLLQ +A + Sbjct: 61 LKDVADHGAEPFGSGLDALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGAVAAAGRG 120 Query: 126 -LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-EEQPKLMVIDSIQVMH 183 LY++GEESL Q+ RA RLG+ D L ++ T ++ + E E P L+++DS+Q + Sbjct: 121 VLYLSGEESLPQLKARAARLGVLHDELMAVATTRLDDVLPHLEGPEAPALLIVDSVQTVS 180 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 + PG+V+QVR + + K G +++VGHVTKDG+LAGP++LEH +D + + Sbjct: 181 SDRAEGLPGNVSQVRAVSTEIVEACKRSGTTVLLVGHVTKDGALAGPRLLEHLVDTVISI 240 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD FR LR KNRFG EL VF M EQG+ V +PS FL D SG+++++ Sbjct: 241 EGDRRQMFRLLRVLKNRFGPNQELLVFRMVEQGMEVVEDPSTFFLGARDPALSGTALVMA 300 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 +G RPL VE+QALV S +A PRR +G + NRL +LLAVL + L D++ + Sbjct: 301 VDGQRPLAVEVQALVTRSYLAIPRRTGLGFDVNRLHLLLAVLEKRLRLNFGQVDIYAKIG 360 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG+K+ + DL L+ A++SS D PLP+ V +GEV L G++RPV + R +A + G Sbjct: 361 GGMKLQDPGMDLGLVAAVLSSFYDLPLPERAVFWGEVDLNGQVRPVAAHTIRRDQARRLG 420 Query: 424 FRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 + + PA + + P V L DAL Sbjct: 421 YTPILHPADDAARGVPT------VAALQDAL 445 >UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R3_GARVA Length = 495 Score = 327 bits (839), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 183/498 (36%), Positives = 266/498 (53%), Gaps = 46/498 (9%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVR--------------------LA 40 MA ++C+ECG +W G+C C W T+ E R A Sbjct: 1 MASKSTLHYLCSECGWSGSKWYGRCPECGEWGTVNEFREARVSGLSRTTRTPRATTASRA 60 Query: 41 ASP-MVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 SP + + R ++ Q +S+I ++ R TGF EFDRVLGGG+VPGS L Sbjct: 61 YSPDSITTSNRNIAHSTLDSATSAQPISEIQADDAMRIHTGFSEFDRVLGGGLVPGSVTL 120 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 I G PG GKSTLLL+ +++Q K LY++GEES QV +RA R+ D L + Sbjct: 121 IAGEPGIGKSTLLLKAAAYVSKQSKESNTPPVLYISGEESAAQVKLRASRINAVNDYLLL 180 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 + ++ + + E P L ++DS Q + +V G QVRE A+ L AK + Sbjct: 181 ATTGDLDTVLDLIETHHPTLAIVDSAQTISAQEVDGITGGSTQVREVASALIDVAKANNI 240 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 I++VGHVTKDGS+AGP+ LEH +D +GD + R LR+ KNRFG +E+G F M+ Sbjct: 241 PILLVGHVTKDGSIAGPRTLEHLVDTVCQFEGDTQTALRMLRAVKNRFGPTDEVGCFDMS 300 Query: 274 EQGLREVSNPSAIFLSRG----------DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMM 323 +G+ EV +PS +FLS D G+ V EG R L +EIQALV S + Sbjct: 301 GEGIEEVPDPSGLFLSSTENANQGKNAQDCTNDGTCVTFTLEGHRSLPIEIQALVTQSAL 360 Query: 324 ANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVS 383 PRR G++ NRLA+L AVL+RHG + + +D++V+ + G E S DLA++ A+ S Sbjct: 361 PTPRRAVSGVDSNRLAMLTAVLYRHGRVNLLAKDLYVSTIAGALAKEPSCDLAIVAALAS 420 Query: 384 SLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIV----PAANVPKKAP 439 + + + GE+ L G++RPVP + R+ EAA+ G++RAIV N+P Sbjct: 421 TAAGKAVTPKTCAIGEMSLTGQVRPVPRIEPRLREAARIGYKRAIVCHMWKNVNIP---- 476 Query: 440 EGMQIFGVKKLSDALSVF 457 G++I V + +AL Sbjct: 477 -GLEIIEVSTVREALKAL 493 >UniRef50_A4SAK3 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAK3_OSTLU Length = 478 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 203/484 (41%), Positives = 290/484 (59%), Gaps = 48/484 (9%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K A+VC ECG D +W GQC AC +W+T+ + LA P + G AG Q Sbjct: 4 KTAYVCAECGEDSRQWLGQCPACKSWDTMKAIALA--PTSGGGAGKASAGGGAGARARQT 61 Query: 66 LSDISL-EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK 124 + + L EEL KE +RVLGGGVVPG IL+GG+PG GKST+LLQ L + + Sbjct: 62 MPRMRLREEL------GKEIERVLGGGVVPGGMILVGGDPGVGKSTILLQLAGLLGARGE 115 Query: 125 -----------------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 LY +GEES++QVA RA R+G+ + + + S T +E I Sbjct: 116 EREGEEDGANESIAAGGVLYASGEESVEQVAGRAERMGIDPNGIYLYSATRLENILEAVS 175 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 +P +V+DSIQ + + D SPGSV+QVRE A L AKT G+ + ++GHVTK G + Sbjct: 176 TLKPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKTTGMPVFIIGHVTKSGDI 235 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+VLEH +D + L+GDAD R LR HKNR+G+ +E+GVF M++ G++ V++PSA+F Sbjct: 236 AGPRVLEHIVDVVLYLEGDADRAVRILRGHKNRYGSTDEVGVFQMSDGGMKPVASPSALF 295 Query: 288 LSR---GDEVTSGSSVMVVWEGTRPLLVEIQALVDH--------SMMANPRRVAVGLEQN 336 L +V++ +V V +G+RP ++E+QAL + M A P R AVGL Sbjct: 296 LGERILSPDVSAAPTVTV--QGSRPFMLEVQALTNERADAGEGGGMSAPPIRTAVGLRFE 353 Query: 337 RLAILLAVLHRHG-GLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLV 395 R+ +LLAVL + G ++ DVF+N+VGG+K+ + S D+A+ LA+ SS ++PLP D+ Sbjct: 354 RMQLLLAVLAKFVLGRRLQKHDVFINIVGGMKLEDPSTDVAVALAIASSFVEKPLPPDMC 413 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE-----GMQIFGVKKL 450 FGEVGL GE+RPV + RI+EAA GF+R ++P A +PE G+++ L Sbjct: 414 FFGEVGLGGELRPVMQAERRIAEAATMGFKRVLLPEAG---SSPEMGKKTGIELVRCNTL 470 Query: 451 SDAL 454 +DAL Sbjct: 471 ADAL 474 >UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7W6_9DELT Length = 447 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 184/435 (42%), Positives = 248/435 (57%), Gaps = 10/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA PKR F C ECG P W+GQC C WNT+ E VA R G Sbjct: 1 MATKPKRVFTCTECGGVSPTWRGQCPRCGVWNTLVE-------SVAGAGRKGHSLGEPSG 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 V L E+ F T F DRVLGGG+ PG A+L+GG PG GKSTLLLQ A Sbjct: 54 VPV-PLGSHPNEDFRPFPTAFSGLDRVLGGGLTPGGAVLLGGEPGIGKSTLLLQLAGLAA 112 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSI-EQICLIAEEEQPKLMVIDS 178 + +Y++ EESL Q+ RA RLG+ + L S T + ++ P L+++DS Sbjct: 113 VAGRRVVYLSAEESLPQLKARAERLGVLHEGLLAASTTDAGAAVDVLGATPAPDLVIVDS 172 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q MHMA ++ + GSV+QVR AA AK +V+VGHVTK+G +AGPK+LEH +D Sbjct: 173 VQTMHMAGIEGAAGSVSQVRSVAAACVEAAKRGQACLVLVGHVTKEGQIAGPKLLEHMVD 232 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+G+ FR LR KNR+G +EL V M E GL EV +PS FL D SGS Sbjct: 233 TVLYLEGERRHLFRILRVLKNRYGPTDELLVMEMREAGLIEVPDPSTFFLGDRDPAVSGS 292 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V++ EG RP VE QAL S ++ PRR A+GL+ RL +LLAVL + L + D+ Sbjct: 293 AVVMAVEGRRPFAVEAQALAAKSFLSVPRRAALGLDVGRLHLLLAVLEKRLRLNLGQADI 352 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + + GG+K+ + DL + A++SS DRPLP V +GEV L+G IRPV + R+ + Sbjct: 353 YAKIGGGLKIQDPGLDLGIAAAVLSSFYDRPLPAGAVFWGEVDLSGRIRPVAAHDTRLKQ 412 Query: 419 AAKHGFRRAIVPAAN 433 A + G+ + P+A Sbjct: 413 AERLGYGPVLCPSAG 427 >UniRef50_B7GN99 DNA repair protein radA n=20 Tax=Bifidobacteriaceae RepID=B7GN99_BIFLI Length = 512 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 183/513 (35%), Positives = 279/513 (54%), Gaps = 61/513 (11%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEV---------RLAASPMVARNERL 51 MAK+ + +VC+ECG + P+W G+C C W T+ E R AA +R + + Sbjct: 1 MAKSSVQ-YVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSV 59 Query: 52 SGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 + + A+ ++++ E + R TGF EFDRVLGGGVVPGS LI G PG GKSTL Sbjct: 60 TVANNARSAAR--PITEVGTESVERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTL 117 Query: 112 LLQTLCKLAQQM----------------------------------------KTLYVTGE 131 LLQT +A+ + LY++GE Sbjct: 118 LLQTAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQDNTASTHANTVLYISGE 177 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSP 191 ES QV +RA R+ NL + S T + + + E+ +P L ++DS Q + +V Sbjct: 178 ESQAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGIS 237 Query: 192 GSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRF 251 G QVRE A+ L AKT + + +VGHVTKDGS+AGP+ LEH +D +GD+++ Sbjct: 238 GGSTQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETAL 297 Query: 252 RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD-------EVTSGSSVMVVW 304 R LR+ KNRFG +E+G F M+ +G+ EV++P+ +FLS GD G+ V Sbjct: 298 RMLRAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLS-GDGPDAANVAPVEGTCVTFTL 356 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 +G R L +E+QALV S++ PRR G++ +R+A+L+AVL+RH L + D++++ + Sbjct: 357 DGHRSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIA 416 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G + E +DLA++ A+ S+ +P+ + GE+ L G++RPVP + R+ EAA+ GF Sbjct: 417 GGQAKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGF 476 Query: 425 RRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A++P P EG+++ LSDAL Sbjct: 477 TTAVIPPLRKPVHV-EGLRLVESNTLSDALDAL 508 >UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9H8_THEAS Length = 450 Score = 315 bits (806), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 182/440 (41%), Positives = 256/440 (58%), Gaps = 23/440 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLS-GYAGSAG 59 MA + C+ C G+C +C +W T+ R E L A S G Sbjct: 1 MAPKTSSRYRCSNCDFVSLTLVGRCPSCGSWGTME-----------REEILPVSSAPSGG 49 Query: 60 VAKVQKLSDISLEELP---RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 + K+ ++LEE P R +G + D VLGGG +PG +L+GG PG GKSTLLLQ+ Sbjct: 50 LPKL-----VTLEEAPPERRILSGLPDLDLVLGGGWLPGGVVLLGGEPGVGKSTLLLQSC 104 Query: 117 CKLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPT-DNLNMLSETSIEQICLIAEEEQPKLM 174 +AQ K +YV+GEE+ Q+A RA RL L +N +L + + AE +L+ Sbjct: 105 SAVAQGGTKVVYVSGEETPSQIASRAKRLQLTLGENFKVLVCDDVMKAIGAAEAHGAELL 164 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 V+DS+Q + D PGS QVR A + FAK G + VM+GH+TK G++AGPK LE Sbjct: 165 VVDSVQALRHPDASGWPGSPNQVRAVAENVIGFAKRTGASAVMIGHITKQGAIAGPKALE 224 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D ++ G+ SR R LR+ KNRFG ELG+F M E+GL VS+PSA+F DE Sbjct: 225 HLVDVVLVFFGERTSRNRLLRAEKNRFGGTEELGIFQMCERGLVPVSDPSALFWGE-DEG 283 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 +G ++ V EG+RP+L EIQAL S P+R + G+E NRL +L+AV+ R G+ + Sbjct: 284 VAGVAMGVPMEGSRPILSEIQALTCQSPYPYPKRASKGIELNRLQLLMAVMDRRCGMSLR 343 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DV++NV GG+ + + + DLA+ A+ SS+ D PL GEVGLAGE+RPVP + Sbjct: 344 TSDVYLNVAGGLAIQDPAVDLAVCAAIASSVEDVPLDMKACFIGEVGLAGEVRPVPRMAQ 403 Query: 415 RISEAAKHGFRRAIVPAANV 434 R+ EA + GFRR +V A ++ Sbjct: 404 RVREAERFGFRRFVVSAKDL 423 >UniRef50_Q9FK38 DNA repair protein-like n=8 Tax=rosids RepID=Q9FK38_ARATH Length = 484 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 180/474 (37%), Positives = 277/474 (58%), Gaps = 28/474 (5%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPM------------VARNERLSG 53 K +VC CG +W G C ACH T+ + + LS Sbjct: 10 KTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLGFTEGKGLSW 69 Query: 54 YAGSAGVAKVQKLSDIS---LEELPRFST-GF--KEFDRVLGGGVVPGSAILIGGNPGAG 107 A V + +L+D+ ++ R S G E RVLGGG+ PGS ILIGG+PG G Sbjct: 70 LPEQATV-QPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLILIGGDPGIG 128 Query: 108 KSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 KSTLLLQ +LA+ LY++GEES++Q+ RA R+ + T+ L + S + ++ I A Sbjct: 129 KSTLLLQG-SELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYLFSSSDLQDILNKAH 187 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 P+ ++IDSIQ +++ DV S G + QV+E + L RFAK + + +VGHVTK G + Sbjct: 188 RLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNIPVFLVGHVTKAGDI 247 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+VLEH +D + L+G+ S +R LRS KNRFG+ +ELGVF M GL VSNPS I+ Sbjct: 248 AGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMANSGLEVVSNPSGIY 307 Query: 288 LSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAV 344 LS+ + +V +G +V VV +G+R L+E+QAL S + R G++ +R +++AV Sbjct: 308 LSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALC--SPGSTVSRHVNGVQASRADMIIAV 365 Query: 345 LHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAG 404 L + GL++ + +F+NV G+ ++ET+ DLA+ A+ SS + P+P + GE+GL G Sbjct: 366 LMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPIPHGVAFIGEIGLGG 425 Query: 405 EIRPVPSGQERISEAAKHGFRRAIVPAA---NVPKKAPEGMQIFGVKKLSDALS 455 E+R VP ++R+S AK GF + +VP + ++ + + ++I G K L + ++ Sbjct: 426 EVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKNLKELIN 479 >UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium jeikeium RepID=Q4JXK0_CORJK Length = 454 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 164/378 (43%), Positives = 238/378 (62%), Gaps = 2/378 (0%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT-LYVTGEESLQQV 137 TG E DRVLGGG+VPGSA+L+ G PG GKSTLLL+ A++ T L +T EES+ QV Sbjct: 72 TGIGELDRVLGGGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVGQV 131 Query: 138 AMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQV 197 RA R G D L + SE +E + P+L+++DS+Q M V+ G VAQ Sbjct: 132 RHRAERTGALHDKLYLASENDLENGLAQVDALNPELIIVDSLQTMQATGVEGVAGGVAQT 191 Query: 198 RETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSH 257 R + LT AK G ++ VGHVTK+G++AGP+ +EH +D + +GD S R LR Sbjct: 192 RAVTSTLTTLAKMSGTPVIAVGHVTKEGTVAGPRTIEHLVDVVLNFEGDKHSSMRFLRGI 251 Query: 258 KNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQAL 317 KNRFGA +E+G F T G++EV++PS +FL E +G++V VV +G R ++ E+Q L Sbjct: 252 KNRFGATDEVGCFEQTAHGIQEVADPSGLFLHHRTESVTGTAVTVVMDGRRAMVGELQTL 311 Query: 318 VDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLAL 377 +S NP+R G++ +R++++LAVL GL +AD++V+ VGG+K+ E SADLA Sbjct: 312 ALNSEFKNPKRYMTGMDASRVSMVLAVLSERCGLPLADKEVYAATVGGMKILEPSADLAT 371 Query: 378 LLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKK 437 LA+ S+ + PLP L+ GEVGL GE+R +P +R++EA + GF A+VP N + Sbjct: 372 GLALASTAKRSPLPLGLIALGEVGLGGEVRRIPQLTQRLAEAHRLGFHTALVP-KNCHYE 430 Query: 438 APEGMQIFGVKKLSDALS 455 AP+GM++ V L A++ Sbjct: 431 APKGMKVKEVSTLCQAVN 448 >UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae RepID=B1L9V3_THESQ Length = 441 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 176/452 (38%), Positives = 267/452 (59%), Gaps = 24/452 (5%) Query: 7 RAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKL 66 + FVC+ CG P+W G+C C ++T EV V R + G + ++ Sbjct: 2 KKFVCSNCGYVSPKWFGRCPQCGEYDTAEEV-------VQRRKNREG--SPSLFLNLEDA 52 Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL 126 +ISLE R STGF E DR GG+VPG IL+ G PG GKST+ LQ + A++ + Sbjct: 53 GEISLE---RLSTGFSELDRAFRGGIVPGQVILLSGEPGIGKSTIALQIAERFAERGLVV 109 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLS-ETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185 YV+GEES QQ+ +RA RL L +L+ E I++I + ++ MV+DSIQ + + Sbjct: 110 YVSGEESPQQLKLRADRLLLKRKKDILLTLENDIDEIISSLQNKRVSFMVVDSIQTVFSS 169 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245 D+ SSPGS++QV+ FAK RGV +++VGHVTK+G +AGPK++EH +D +G Sbjct: 170 DLGSSPGSISQVKNVTMKTIDFAKRRGVPVLLVGHVTKEGEIAGPKLVEHMVDTVAYFEG 229 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE 305 D + R L+ KNRFG +E+ VF + E G +V NPS + GD G+ + V+E Sbjct: 230 DRRTGLRLLKITKNRFGPSDEVAVFELKENGFVQVENPS---FTEGDADLPGNVLTCVFE 286 Query: 306 GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGG 365 GT+P +V+IQALV + +P+RV G++ NR+ +L+AV+ ++ L + DV+VNVVGG Sbjct: 287 GTKPFVVQIQALVSKNRTFSPKRVCKGVDANRVMLLIAVISKYLKLPIETHDVYVNVVGG 346 Query: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 ++VT+ +ADLA+ L++VSS + L + GE+GL G++R V + R++ G Sbjct: 347 LRVTDPAADLAIALSIVSSYLEVSL-HNTAAVGEIGLDGKVRKVYNINRRLNSLKSSG-- 403 Query: 426 RAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 R IVP +K +F V+ L +A+S+ Sbjct: 404 RIIVPPIEEEQKG-----VFEVRDLKEAVSII 430 >UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID=Q76B91_ORYSJ Length = 619 Score = 310 bits (795), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 263/448 (58%), Gaps = 22/448 (4%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP--MVARNERLSGYAGSAG 59 A + ++VC CG + +W G C C A T+T+ + P V + + Sbjct: 141 AGKERASYVCGNCGEGFSQWWGTCRHCEAMGTLTKYVPGSDPGASVGSHHAFRSWIPQKS 200 Query: 60 -------VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 + +V K D S +P E RVLGGGVVPGS IL+GG+PG GKS+L+ Sbjct: 201 KEMVPQSLQQVTKGVDQSEWRIPLSGNFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLI 260 Query: 113 LQTLCKLAQQM------KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIA 166 LQ +++ + +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 261 LQLASIMSENIGAGESSAIVYVSGEESIEQIGNRADRMSIKSRNLYLYSSTDIEDILDKI 320 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 + P+ ++IDSIQ +++ S G++ QV+E + L RFAK + ++++GHVTK G Sbjct: 321 QPLSPRALIIDSIQTVYLRGFAGSAGNMTQVKECTSALLRFAKLTNIPVILIGHVTKTGD 380 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 +AGP++LEH +D + ++G+ R LRS KNRFG+ +ELGVF M+ GL+ V NP+ + Sbjct: 381 IAGPRLLEHIVDVVLYMEGERCLSHRLLRSVKNRFGSTDELGVFEMSGYGLQPVLNPTEM 440 Query: 287 FLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRR-VAVGLEQNRLAILL 342 FL+ D E+ +G +V VV +G+R +E+QAL + +PR VG+ +NR I++ Sbjct: 441 FLTEHDLDSEILAGLAVAVVLDGSRTFAIEVQALC---VSGSPRNGEVVGIPRNRADIII 497 Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +VL + GL++ D VF+NVV G +TET+ DLA+ ++ SS + P+P D+ GEVGL Sbjct: 498 SVLMKQAGLKLQDNAVFLNVVSGFMLTETAGDLAIAASICSSFLEYPIPNDIAFIGEVGL 557 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVP 430 GE+R VP +R+ AK G+++ +VP Sbjct: 558 GGELRTVPRMDKRVLAIAKLGYKKCVVP 585 >UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thaliana RepID=Q0WVW9_ARATH Length = 587 Score = 310 bits (793), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 174/479 (36%), Positives = 272/479 (56%), Gaps = 31/479 (6%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSG---YAGSAGVAK 62 K +VC CG +W G C ACH T+ + + + G++ Sbjct: 106 KTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLGFTEGKGLSW 165 Query: 63 VQKLSDISLEELPRFSTGF--------------KEFDRVLGGGVVPGSAILIGGNPGAGK 108 + + + + L G E RVLGGG+ PGS ILIGG+PG GK Sbjct: 166 LPEQATVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLILIGGDPGIGK 225 Query: 109 STLLLQTLC------KLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQI 162 STLLLQ +LA+ LY++GEES++Q+ RA R+ + T+ L + S + ++ I Sbjct: 226 STLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYLFSSSDLQDI 285 Query: 163 CLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT 222 A P+ ++IDSIQ +++ DV S G + QV+E + L RFAK + + +VGHVT Sbjct: 286 LNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNIPVFLVGHVT 345 Query: 223 KDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSN 282 K G +AGP+VLEH +D + L+G+ S +R LRS KNRFG+ +ELGVF M GL VSN Sbjct: 346 KAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMANSGLEVVSN 405 Query: 283 PSAIFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLA 339 PS I+LS+ + +V +G +V VV +G+R L+E+QAL S + R G++ +R Sbjct: 406 PSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALC--SPGSTVSRHVNGVQASRAD 463 Query: 340 ILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 +++AVL + GL++ + +F+NV G+ ++ET+ DLA+ A+ SS + P+P + GE Sbjct: 464 MIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPIPHGVAFIGE 523 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA---NVPKKAPEGMQIFGVKKLSDALS 455 +GL GE+R VP ++R+S AK GF + +VP + ++ + + ++I G K L + ++ Sbjct: 524 IGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKNLKELIN 582 >UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4J073_MAIZE Length = 641 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 168/447 (37%), Positives = 269/447 (60%), Gaps = 24/447 (5%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVAR-NERLSGYAGSAGVA-KV 63 + ++VC+ CG +W G+C C+A T+ + A P + S + G + + K Sbjct: 163 RSSYVCSNCGEGDSQWWGKCRHCNAMGTVDKYVGVAGPESGGVDVEWSHHIGRSWMPQKA 222 Query: 64 QKLSDISLEE-----------LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 +++ SL+E +P + + E RVLGGG+VPGS IL+GG+PG GKS+L+ Sbjct: 223 KEVVPQSLQEVNKGVDQAQWRIPLWGSFGMEISRVLGGGIVPGSLILVGGDPGVGKSSLM 282 Query: 113 LQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIA 166 LQ + + K +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 283 LQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGTDIEDILDKI 342 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 + P+ ++IDSIQ +++ S G+++QV+E + L RFAK + + ++GHVTK G Sbjct: 343 QPLSPRALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFLIGHVTKTGD 402 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 +AGP++LEH +D + ++G+ S R LRS KNRFG+ +ELGVF M E GL+ V NPS + Sbjct: 403 IAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSADELGVFEMAEFGLQAVLNPSQM 462 Query: 287 FLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 FL+ D E+ +G +V V+ +G+R +E+QAL + + VG+ Q+R ++++ Sbjct: 463 FLTEHDSDSEIMAGLAVAVILDGSRTFALEVQALCVSGYHRSGQ--VVGIPQSRADVIIS 520 Query: 344 VLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLA 403 VL + GL++ D VF+NVV G K+TET+ DLA+ ++ SS + P+P D+ GEVGL Sbjct: 521 VLIKQAGLKLQDNIVFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAFIGEVGLG 580 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVP 430 GE+R VP +R+ +K G+++ +VP Sbjct: 581 GELRTVPRMDKRVIAISKLGYKKCVVP 607 >UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms RepID=A9RTQ6_PHYPA Length = 610 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 184/458 (40%), Positives = 276/458 (60%), Gaps = 34/458 (7%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVR----------------------LAASP 43 K +VC +CG Y +W GQC C A N++ E + A+ Sbjct: 120 KTHWVCEDCGESYTQWWGQCRNCKAMNSMKEFKEHTGNAGKRGGAGARAVENLVLSQANG 179 Query: 44 MVARNERLSGYAGSAGVAK-VQKLSDISL------EELPRFSTGFKEFDRVLGGGVVPGS 96 V ++ R G A V Q+LSD++ LP +E RVLGGG+VPGS Sbjct: 180 TVKKSPRAGGRAWLESVGGGPQRLSDVAAGHSQLHWRLPLQGDTGQEIGRVLGGGLVPGS 239 Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSE 156 IL+GG+PG GKSTLLLQ + LYV+GEES++Q++ RA RL + L + S Sbjct: 240 LILVGGDPGVGKSTLLLQGTDEQGPG-PVLYVSGEESVEQISNRADRLNITAHELFLYSA 298 Query: 157 TSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQ-VRETAAYLTRFAKTRGVAI 215 T +E + E QP+ +++DSIQ +++A+ S GSV+Q VRE A L R AK + I Sbjct: 299 TDLELVIGSITEIQPRAVIVDSIQTVYLAEANGSAGSVSQQVRECATALLRAAKETKIPI 358 Query: 216 VMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQ 275 +VGHVTK G +AGPK+LEH +D + ++G+ R LR KNR+G+ +E+GVF M ++ Sbjct: 359 FLVGHVTKGGDIAGPKILEHVVDVVLYMEGERLQSHRLLRVVKNRYGSTDEVGVFEMVQE 418 Query: 276 GLREVSNPSAIFLS-RGDEVTSGSS--VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG 332 GL V++PS +FLS R + +T+ +S V V EG+RP+L+E+QAL RR A G Sbjct: 419 GLAAVASPSELFLSARNENLTNAASAAVAVTMEGSRPILLEVQALTSSVGQQPGRRTANG 478 Query: 333 LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ 392 ++ RL++LLAVL + L++++QDVF+NVVGG+++ E +AD+A+ +A+ SS ++ + + Sbjct: 479 VDAQRLSLLLAVLVKQASLRLSNQDVFINVVGGLQLREPAADVAIAVAICSSYFEKAVDR 538 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP 430 ++ GE+GL GE+R V + R+ EAAK GF++ +VP Sbjct: 539 EMAFIGEIGLGGELRSVGQMERRLLEAAKLGFKKCVVP 576 >UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1 Tax=Sorghum bicolor RepID=C5Z4B1_SORBI Length = 673 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 264/449 (58%), Gaps = 28/449 (6%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNE-RLSGYAGSAGVAKVQ 64 K ++VC+ CG +W G C C A T+ E ++ A E S + G + + Q Sbjct: 195 KNSYVCSNCGEGNSQWWGICRHCGAVGTVVEYVAGSNSGGASAEGSHSHHIGRSWIP--Q 252 Query: 65 KLSDISLEELPRFSTGFK--------------EFDRVLGGGVVPGSAILIGGNPGAGKST 110 K ++ + LP + G E RVLGGG+VPGS +L+GG+PG GKS+ Sbjct: 253 KAKEMVPQSLPEVNKGVDQAEWRIPLWGSFGMEISRVLGGGIVPGSLVLVGGDPGVGKSS 312 Query: 111 LLLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICL 164 L+LQ + + K +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 313 LMLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGTDIEDILD 372 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 + PK ++IDSIQ +++ S G+++QV+E + L RFAK + + ++GHVTK Sbjct: 373 KIQPLSPKALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFLIGHVTKT 432 Query: 225 GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPS 284 G +AGP++LEH +D + ++G+ S R LRS KNRFG+ +ELGVF M E GL+ V NPS Sbjct: 433 GDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSTDELGVFEMAEFGLQAVLNPS 492 Query: 285 AIFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL 341 +FL+ D E+ +G +V V+ +G+R +E+QAL + + VG+ +R ++ Sbjct: 493 QMFLTEHDSDSEILAGLAVAVILDGSRTFALEVQALCVSGSHRSGQ--VVGIPPSRADVI 550 Query: 342 LAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 ++VL + G+++ D +F+NVV G K+TET+ DLA+ ++ SS + P+P D+ GEVG Sbjct: 551 ISVLMKQAGVKLQDSTIFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAFIGEVG 610 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVP 430 L GE+R VP +R+ AK G+++ +VP Sbjct: 611 LGGELRAVPRMDKRVMAIAKLGYKKCVVP 639 >UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQ08_9SPIO Length = 464 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 178/445 (40%), Positives = 259/445 (58%), Gaps = 17/445 (3%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA-GVA 61 KA R F C+ CG P+W G+C C WNT E + G+A SA V Sbjct: 5 KAGGRIFRCSSCGYSQPKWLGRCPGCGEWNTFEE-------QFQEADFTPGFASSAVSVR 57 Query: 62 KVQKLSDISLEEL-----PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 + + + LE++ R +TG EFDRVLGGG V SA+LIGG PG GKSTLL+Q Sbjct: 58 QTDEAHPVPLEQVEVHDTARITTGISEFDRVLGGGAVKRSAVLIGGEPGIGKSTLLMQAA 117 Query: 117 CKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 Q +TLYV+GEES Q+ RA RLG+P N+ +L S+E I + P +++I Sbjct: 118 AAAGQ--RTLYVSGEESAGQIRGRADRLGVPLKNIELLCTNSVENIEKVLNNINPLVVII 175 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DS+Q + + PG++ Q++ A L ++ K R + + HVTK+G +AGPKVLEH Sbjct: 176 DSVQTLFSPQAGTIPGTINQLKYCANELVQWVKERDAVLFLTAHVTKEGIIAGPKVLEHI 235 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL-SRGDEVT 295 +D + + + D R LR+ KNRFG+V+ELG+F M E+GL V +P+A+F+ R E+ Sbjct: 236 VDTVISFERNEDD-VRFLRALKNRFGSVDELGIFRMDEKGLAAVQDPAALFIIQRQGELP 294 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 +GS+ + V+EG+R +VEIQAL + R + ++ R++ + AVL + GL+ +D Sbjct: 295 AGSATVPVFEGSRVFMVEIQALTVPAKGTMTRVFSDKVDSARVSRVAAVLEKRIGLRFSD 354 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 QD+++NV GG+++ E + DLAL LA+ S+ D P ++ GE+ LAGEIRPV + Sbjct: 355 QDIYINVAGGIRLREPAIDLALALALYSARTDIPAHKNEAFIGELSLAGEIRPVRRLKPL 414 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPE 440 I A GF + VPAA PE Sbjct: 415 IKTAQSLGFTQLYVPAAAGDGDEPE 439 >UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinobacteria (class) RepID=RADA_MYCBO Length = 480 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 168/431 (38%), Positives = 258/431 (59%), Gaps = 10/431 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA A + + C+EC +W G+C C W T+ EV + ++ R ++ +G+ Sbjct: 1 MANA-RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAV-- 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +S + TG E DRVLGGG+VPGS L+ G+PG GKSTLLL+ + A Sbjct: 58 ----PISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWA 113 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTD--NLNMLSETSIEQICLIAEEEQPKLMVID 177 Q + LYV+GEES Q+ +RA R+G T+ + + +++ + + E QP L+++D Sbjct: 114 QSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVD 173 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 S+Q M ++ G V QVR A LT AK VA+++VGHVTKDG++AGP+ LEH + Sbjct: 174 SVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLV 233 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + +GD + R +R KNRFGA +E+G F + + G+ + +PS +FL + +G Sbjct: 234 DVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAG 293 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 +++ V +G RPL+ E+QAL+ +PRR G+ Q R A++ AVL +H L +A D Sbjct: 294 TAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVND 353 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 ++++ VGG+++TE SADLA+ +A+ S+ + PLP V+ GEVGLAG+IR V R+S Sbjct: 354 IYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLS 413 Query: 418 EAAKHGFRRAI 428 EAA+ GF A+ Sbjct: 414 EAARQGFTIAL 424 >UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID=C2BUU2_9ACTO Length = 505 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 189/492 (38%), Positives = 267/492 (54%), Gaps = 37/492 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE-VRLAASPMVARNERLSGYAGSAG 59 MAK K +VC+ CG ++P+W GQC +C W T+ E V LA S + GS G Sbjct: 1 MAKE-KTVYVCSSCGEEWPKWTGQCRSCGQWGTLEENVVLAKSSARTTGSGTTRSTGSYG 59 Query: 60 --VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 + + + S E R TG EFDRVL GG+VPG+ IL+ G PG GKSTLLL+ Sbjct: 60 RPASPAKPIGHYSTERAVRLPTGVGEFDRVLSGGIVPGAVILLAGEPGIGKSTLLLEVAA 119 Query: 118 KLAQ-------------------------------QMKT-LYVTGEESLQQVAMRAHRLG 145 ++AQ + KT LY+TGEE+ + V RA R+G Sbjct: 120 RIAQGTAPRSPRVSENSPGLRLVSADSETPATVDTEGKTVLYLTGEETAEAVLSRAKRIG 179 Query: 146 LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 +NL + +ET + Q E P + ++DSIQ + + +S G AQVRE A L Sbjct: 180 GVAENLYLAAETQVSQALAQIETTSPDVTIVDSIQTLTDPTMDTSIGGPAQVREVTARLI 239 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 AK+R +A+++VGHVTKDG++AGP+ LEH +D +G+ R LR+ KNR+G + Sbjct: 240 DAAKSRHMALILVGHVTKDGAVAGPRTLEHLVDVVCQFEGERTGELRLLRAVKNRYGPTD 299 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMAN 325 +G F M E G+ + +PS +FLS+ E G+ V + EG R L +EI+AL + Sbjct: 300 AVGFFQMVESGIEGIEDPSGLFLSKTAEPVPGACVTMSLEGRRALPIEIEALTTPIAGGS 359 Query: 326 PRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSL 385 PRR GL+ +R A++LAVL L D +V+ VGG + E + DLA+ LA S++ Sbjct: 360 PRRTVSGLDYSRTAMMLAVLQARLKLPFGTLDAYVSTVGGARAVEPAVDLAVALAAASAV 419 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQI 444 + + LV FGEV L GEIR + R++EAA+ GF AIVPAA K P G +I Sbjct: 420 TGQVIDPGLVAFGEVSLTGEIRSCTAVSRRVAEAARLGFTGAIVPAAATRDLKTPRGFKI 479 Query: 445 FGVKKLSDALSV 456 L +A+S+ Sbjct: 480 QAAANLREAMSL 491 >UniRef50_D1Y454 DNA repair protein radA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y454_9BACT Length = 451 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 185/457 (40%), Positives = 268/457 (58%), Gaps = 15/457 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + + C ECG G+C C AW T+ E A M A AG Sbjct: 1 MAKKDGKRYCCIECGYVSLVPSGKCPRCGAWGTLEEEIPVAPSMAA-----------AGT 49 Query: 61 AKVQKLSDISLEELP-RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 AK+ DIS E P R ++GF E DRVLGGG VPG +L+GG PG GKSTLLLQ + Sbjct: 50 AKILTPVDISTLEPPGRLASGFGELDRVLGGGWVPGGVVLLGGQPGIGKSTLLLQVCGHI 109 Query: 120 -AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 A + LY++GEES Q+ +RA RL + D L++ T I+ +A++ L+V+DS Sbjct: 110 SAAGRRVLYISGEESPSQLGLRAKRLKILHDGLDVCCHTVIDDALALAKDHS--LIVVDS 167 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q M + + PG+ QVR TA +AK GV +V+VGH+TK+G +AGP +LEH +D Sbjct: 168 VQAMRTSQAEGWPGTPTQVRATAQVCVNYAKEHGVPMVLVGHITKEGRIAGPMLLEHMVD 227 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 ++ D S +RTLR+ KNR+G +E+G+F M GL EV +PS ++ +R D SG Sbjct: 228 AVIMFADDNSSVYRTLRASKNRYGGTDEMGIFEMRSDGLTEVPDPSYLYWNRSDGAVSGV 287 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 + V+ EG+RPL+ EIQ L S A P+R +GL N++ +LLAVL L D+ Sbjct: 288 VMTVIMEGSRPLVAEIQTLASESSFAYPKRAGIGLGANKIGMLLAVLQSRCALPSLRDDI 347 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + NV GG+++ + ADLAL +M S+L + + + + GEVGLAGE+RPV +R+ E Sbjct: 348 YCNVAGGLEIHDPGADLALAASMASALTGKNVLSECCLIGEVGLAGEVRPVSGLAQRLRE 407 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 AA+ GF+RA+V + + +++ V +S+AL+ Sbjct: 408 AARLGFKRAVVSSREEKPQLDAEIELIRVLSVSEALA 444 >UniRef50_C7RFC7 DNA repair protein radA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RFC7_ANAPD Length = 456 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 266/467 (56%), Gaps = 22/467 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEV---RLAASPMVARNERLSGYAGS 57 MAKA K+A+ C CG W GQC C W ++ EV + A+ + ++ Sbjct: 1 MAKA-KKAYECTSCGHTQGVWAGQCPECGKWGSMHEVIVDKKASKQNIVVEDK------- 52 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 +KL I+L+E R + + EFDR +GGG+V S ++ PGAGKSTLLLQ Sbjct: 53 ----NAKKLKSIALDESERIKSTYSEFDRAVGGGLVRDSVSILTARPGAGKSTLLLQLSK 108 Query: 118 KLAQQ-MKTLYVTGEESLQQVAMRAHR-LGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 A + +K +Y++GEES Q+ RA R + ++N+ +LS S++ + ++ Sbjct: 109 SYADKGLKVIYISGEESESQIKSRADRIMSELSENIWILSTNSMDLAIKEIKNVDADIVF 168 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKT--RGVAIVMVGHVTKDGSLAGPKVL 233 +DSIQ +A++ + GS Q E A AK R A++M+GH+TK G +AG + L Sbjct: 169 LDSIQTFSLAELDNKQGSPTQTIEVANKAVDIAKDSERKRAVIMIGHMTKKGEMAGLRTL 228 Query: 234 EHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE 293 EH +D ++LDG+++ R L S KNRFG E+G+F+M E GL E++NPS F++ E Sbjct: 229 EHLVDTVLVLDGESEEDLRILTSTKNRFGRTGEIGLFSMDEDGLNEITNPSEYFITERSE 288 Query: 294 VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM 353 GS++ V EG+R L VEI++LV S M P+R+ L ++ L L+++L GL + Sbjct: 289 DIEGSAISVTKEGSRLLEVEIESLVSKSFMPYPQRIGDSLRRDDLNTLISILQERAGLNL 348 Query: 354 ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 D +V + GG+K++E S +LA+++++ SSL P+ V EVGL GE++ VP + Sbjct: 349 YDYNVIIKTTGGIKLSEPSVNLAIMVSIASSLMKHPVSDKSVFIAEVGLTGELKKVPQIK 408 Query: 414 ERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 +R+ E + G+++A V ++ K + ++I+ +L++ V D++ Sbjct: 409 QRLKEIERLGYKKAFVAKNSIDSKDFKELKIY---QLANIRQVIDEV 452 >UniRef50_C5CHP4 DNA repair protein radA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHP4_KOSOT Length = 442 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 164/435 (37%), Positives = 265/435 (60%), Gaps = 13/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M++ +R +VC+ CG + P W G+C +C WN+ + + ++ ++ V Sbjct: 1 MSRKKRRIYVCDACGYESPAWFGRCPSCGTWNSAISMSVDNHAIIETSKE---------V 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A ++ LSDI +E+ R TG EFDR LGGGVVPGS +L+ G PG GKSTL+LQ ++ Sbjct: 52 ANIRSLSDIKVEDSHRLFTGLNEFDRALGGGVVPGSVVLVSGEPGIGKSTLMLQVAERMV 111 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGL-PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 K LY++GEES +Q+ +RA RL L T+N+ + + T ++ + + + + L++ DS+ Sbjct: 112 SYGKVLYISGEESQRQIKLRARRLKLGKTENIEVSATTELDFLEKL-DLKDYSLLIFDSL 170 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + +++V S PGS QVRE A ++ AK VA V+VGHVTK G +AGPK++EH +D Sbjct: 171 QTLRLSNVASLPGSFVQVRECANFVVSKAKESNVAAVIVGHVTKGGQIAGPKLVEHIVDT 230 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + D + S +R LR+ KNRFG +E+ VF MT GL EV + S +F+ + V G+ Sbjct: 231 VLYFDTNK-SGYRFLRTVKNRFGPSDEIAVFEMTSDGLAEVPDISDLFV-KDFIVAPGNV 288 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG++ LVE+Q+LV + PRR+A G+ +R+ ++ AVL + + + + D++ Sbjct: 289 ITAVSEGSKTFLVEVQSLVSKPIYGTPRRLATGVPIDRVLLVAAVLSKRANIPLDNLDLY 348 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG++V + DLA+ L+++SS ++ +PQ + FGE+GL G +R V +RI Sbjct: 349 INIAGGIQVDDPGTDLAIALSLLSSFTNKAVPQGMAAFGEIGLDGTVRNVTGSSKRIDRL 408 Query: 420 AKHGFRRAIVPAANV 434 + GF + P N+ Sbjct: 409 KESGFSEVLSPNGNI 423 >UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B2S0C8_BORHD Length = 466 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 261/445 (58%), Gaps = 13/445 (2%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK 62 K K + C CG +W G+C C +W ++ P + LS ++ Sbjct: 4 KKDKEIYKCLNCGYKSLKWLGKCPECFSWESLEHY---VEPKSSYGANLS-----KSKSE 55 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 + L D + R+ TG +EFDRVLG G+V GSAILI G PG GKST LLQ L+ Sbjct: 56 IFSLKDFKQVDNVRYLTGIEEFDRVLGAGIVIGSAILISGEPGIGKSTFLLQISSILSLD 115 Query: 123 MKT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 K LY+ GEES+ Q+ +RA+RL + +D L + +E ++ + + + MV+DSIQ Sbjct: 116 GKNVLYLAGEESIPQIKLRANRLKISSDIL-ITNEIDVDALIEMLANIELDFMVVDSIQT 174 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 ++ +VQ S G VAQ++ L +AK + + + +VGHVTKDG LAGPK++EH +D SV Sbjct: 175 LNSREVQGSLGGVAQLKHCVYKLVEWAKGKNITLCLVGHVTKDGILAGPKIIEHMVD-SV 233 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 +A R LR+ KNRFG +NE+G+F MT GL E+ +PS+IFL R +E++SG ++ Sbjct: 234 FYFEEAKKSLRMLRATKNRFGTINEIGIFEMTSLGLVEIKDPSSIFLERKEEISSGIAIG 293 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 ++ EG+R L VEIQAL+ + M R + ++ +++ +LAV+ ++ L + D++VN Sbjct: 294 IINEGSRVLFVEIQALITRTGMNISRIFSEKIDSKKISRILAVISKYLNLNFNNDDIYVN 353 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 V GG+++ + +LA+L+A+ S+ + + Q+L+ GE+ L+GEI+ + + ++ A K Sbjct: 354 VSGGLRIDDVEIELAVLVALFSAKTNVIISQELIFTGEISLSGEIKVSSNIESKVIAALK 413 Query: 422 HGFRRAIVPAANVPKKAPEGMQIFG 446 GF+ V AN+ G + G Sbjct: 414 AGFKS--VFGANLRDNHYNGYESIG 436 >UniRef50_C1N8F6 DNA repair protein-related n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N8F6_9CHLO Length = 720 Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 177/442 (40%), Positives = 254/442 (57%), Gaps = 71/442 (16%) Query: 83 EFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM------------------- 123 E +RVLGGG+VPG+ +L+GG+PG GKSTL+LQ L ++ Sbjct: 241 EVERVLGGGIVPGALMLVGGDPGVGKSTLVLQIAGLLGERALKNANAAKEDAEDAEDAED 300 Query: 124 --------------KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE 169 +YV+GEES++Q+A RA RLG+ D L + S T +E I E Sbjct: 301 GTSTVIASASPPPPSVMYVSGEESVEQLAGRAERLGVHPDGLVVYSATRLEAILEAVVRE 360 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAG 229 +P +V+DSIQ + + D SPGSV+QVRE A L AK+ G+ ++GHVTK G +AG Sbjct: 361 RPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKSAGMPTFIIGHVTKSGDIAG 420 Query: 230 PKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLS 289 P+VLEH +D + L+GDAD R LR HKNR+G+ +E+GVF M + GLR V +PSA+F+ Sbjct: 421 PRVLEHIVDVVLYLEGDADRAVRVLRGHKNRYGSTDEVGVFEMIDAGLRPVPSPSALFM- 479 Query: 290 RGDEVTS---GSSVMVVWEGTRPLLVEIQALVDH------------SMMANPRRVAVGLE 334 G+ V + ++ V +G+RP ++E+QAL MMA R AVG++ Sbjct: 480 -GERVLTPDVSAAPTVTVQGSRPFMLEVQALCAERAGADDAENGGGGMMAPAVRTAVGIK 538 Query: 335 QNRL---AILLAVLHRHG-GLQMADQDVFVNVVGGVK---------------VTETSADL 375 R+ ++LLAVL + G ++ DVFVNVVGG+K + + SAD+ Sbjct: 539 PERMQARSLLLAVLAKFVLGSRVHRHDVFVNVVGGLKARSISHWSPYDRVGALEDPSADV 598 Query: 376 ALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP 435 A+ LA+ SS +R LP D+ FGEVGL GE+RPV + R+ EAA GF R ++PAA Sbjct: 599 AVALAIASSFVERALPADMAFFGEVGLGGELRPVAQAERRLQEAATMGFTRVLMPAAGST 658 Query: 436 KKAP--EGMQIFGVKKLSDALS 455 K A +G+++ L++AL+ Sbjct: 659 KDAGKRQGVEVVLCNTLAEALT 680 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 25/41 (60%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS 42 +KA K+ ++C +CG DY ++ G+C C AW + +A S Sbjct: 106 SKAAKQRYLCQDCGEDYNQFHGRCPNCKAWESFKTFTIAPS 146 >UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponema RepID=RADA_TREPA Length = 455 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 163/432 (37%), Positives = 248/432 (57%), Gaps = 11/432 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK +RAF C CG +P+W G+C C WN+ E +P ++ + + S+ Sbjct: 1 MAKKTERAFSCVGCGYVHPKWLGRCPECGEWNSFEE-----TPSLSSGDVRAVKKASSSP 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + ++ R S G EFDRVLGGG V SAI+IGG PG GKSTLLLQ Sbjct: 56 VQAFPLCAVRAQDAQRISCGIAEFDRVLGGGAVRRSAIMIGGEPGIGKSTLLLQIAAACG 115 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + + LYV+GEES Q+ RA RL +P N+ +L T +E + + P +++DSIQ Sbjct: 116 KSV--LYVSGEESPGQIRGRADRLNIPIQNIELLCATRVEDVERVLNTRCPTFVIVDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + + + P ++ Q++ A L + K R + HVTKDG++AGPKV+EH +D Sbjct: 174 TVFSPEAGAIPMTINQLKYCANELIAWVKERDSVLFFTAHVTKDGNIAGPKVVEHMVDTV 233 Query: 241 VLLD-GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLS-RGDEVTSGS 298 + + + D RF LR+ KNRFG+V+ELG+F M E GL V + + F+S R GS Sbjct: 234 ISFERNEEDIRF--LRALKNRFGSVDELGIFTMGENGLSAVQDTAGFFISTRQGMFPVGS 291 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 + + V EG+R +VEIQAL + + R + ++ R++ + AV+ + GL+ +DQD+ Sbjct: 292 ATVPVCEGSRVFMVEIQALTVPAKSSVTRVFSDRIDSARVSRVAAVIEKRVGLKFSDQDI 351 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +VNV GG+++ E + D+AL +A+ S+ ++ P+ + GEV L+GEIRPV + R+ Sbjct: 352 YVNVAGGIRLYEPAVDVALAMALYSARQNTPVKTNAAFIGEVSLSGEIRPVRRLKTRLKT 411 Query: 419 AAKHGFRRAIVP 430 A GF VP Sbjct: 412 AYGLGFSTIYVP 423 >UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae RepID=A7HJZ5_FERNB Length = 465 Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 265/467 (56%), Gaps = 20/467 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K +VC++CG + P+W G+C C WN+ E L +E S A AG+ Sbjct: 1 MAKA-KTIYVCDKCGYESPKWFGKCPVCGEWNSAKEFSLKD-----HSETKSIRANEAGM 54 Query: 61 -AKVQKLSDIS----LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT 115 A + DI+ L E R TG D +L GG++ G IL+GG PG GKST+ LQ Sbjct: 55 EAPHPRFFDINSATKLLEEERIKTGINSIDELLSGGLIKGQVILLGGEPGVGKSTIALQI 114 Query: 116 LCKLAQQ----MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQP 171 +A+ + Y++GEES+ QV +RA RLG+ + L + SET IE I + + Sbjct: 115 CDSIARNSNNDKRIYYISGEESVGQVGLRAKRLGINNEKLLISSETQIEDILNEIDPNKA 174 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 +L+V+DSIQ + D+ S G + Q++ + F+K G+ +++ HVTK+G++AGPK Sbjct: 175 QLIVVDSIQTLCSVDIDSPVGGIVQIKAVVEKVRIFSKKYGIPSILIAHVTKEGTIAGPK 234 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG 291 ++EH +D + +G+ + +R LR KNR+G E+ VF MT GL+ +S + FL+ Sbjct: 235 LVEHVVDTVIYFEGERTTDYRILRVQKNRYGPSGEITVFQMTSNGLQGLSEDT--FLTYS 292 Query: 292 DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGL 351 + T G+ ++EGTRP V+IQALV M + RR++ G++ ++ I+ AVL +H L Sbjct: 293 N--TPGNIFTSIYEGTRPFNVQIQALVSRVKMTSGRRISHGVDVRKVIIISAVLSKHLNL 350 Query: 352 QMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + D+++NV GGV +T+ +LA+ A++SS D + ++ + GE+GL G IRP + Sbjct: 351 PLDFHDIYMNVSGGVNITDPGCELAIAGAILSSFLDAYI-GNVFMAGEIGLDGSIRPAVN 409 Query: 412 GQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 Q+R+ A K ++P A++ + Q ++ + + +F+ Sbjct: 410 IQKRVENAKKLPIDLIVIPKASIKNTNVKSTQNIKIETVDNIRQLFN 456 >UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga lettingae TMO RepID=A8F5C2_THELT Length = 441 Score = 284 bits (726), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 162/457 (35%), Positives = 257/457 (56%), Gaps = 24/457 (5%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K F+C CG + +W G+C C WNT E + P+ ER+ V K Sbjct: 4 KERFICKSCGYESIKWFGKCPQCGEWNTAVEA--TSKPL----ERIVDLVNLKDVLKSVN 57 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MK 124 + R +TGF E D L G+VPG +L+GG PG GKSTL L+ ++ K Sbjct: 58 ST--------RLTTGFTELDASLCSGIVPGQVLLLGGEPGVGKSTLALEICAWFSKNGYK 109 Query: 125 TLYVTGEESLQQVAMRAHRLGLPT-DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 +LYV+ EES+ Q+A+RA RL D + + S+ I+ + I E+ L+V+DS+Q M+ Sbjct: 110 SLYVSAEESVDQLAIRARRLACENLDGITVCSDNDIDSVLQIINEDY-SLIVVDSLQTMY 168 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 +V + PGSV QVR A + K + +++ H+TK G ++GPK++EH +D + Sbjct: 169 SEEVGTYPGSVVQVRVCAEKIISKCKELSIPSILIAHITKSGEISGPKLVEHLVDTVIYF 228 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +G+ + R LR KNRFG E+ VF M + GL+++ +P +F D++ G+ + V Sbjct: 229 EGEKTTELRILRVIKNRFGPSGEIAVFEMRDDGLKQLCDP--VFFDLTDQL-PGNCLSCV 285 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EG+R +V+IQALV S PRRV+ G + RL +L+A + +H L + DV+VNV+ Sbjct: 286 IEGSRAFVVQIQALVSRSRSNMPRRVSNGFDMTRLLLLIATIGKHMRLPVESHDVYVNVL 345 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG+++T+T+ D A++ A++SS+ ++P+ + V+ GEV L G I+PV + RI + G Sbjct: 346 GGLRITDTAVDAAVVGAILSSMMEKPIEKTSVI-GEVSLDGRIKPVYRMRSRIDSLKRAG 404 Query: 424 FRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV--FD 458 + IVP + V ++I ++ + D L V FD Sbjct: 405 IQSVIVPKS-VDLSDKNLVKIDSLQDMGDVLGVKLFD 440 >UniRef50_B8I5Q5 AAA ATPase n=13 Tax=Clostridiales RepID=B8I5Q5_CLOCE Length = 466 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 153/426 (35%), Positives = 240/426 (56%), Gaps = 14/426 (3%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K F C+ CG P+W G+C C WNT E + +N++ S A + + + Sbjct: 12 KTVFKCSNCGYVSPKWVGRCPECDNWNTFEEREI-------QNQKNSRSASARITKPLVR 64 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MK 124 L+ + R TG EF+RV+GGG+V S +I PGAGKSTLLLQ +A + +K Sbjct: 65 LTQVKAGNSDRIVTGINEFNRVMGGGIVKDSITIITAKPGAGKSTLLLQVAGDVASKGLK 124 Query: 125 TLYVTGEESLQQVAMRAHRL-GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 LY +GEES Q+ RA R+ D + + S+ S++ + + + P L+++DSIQ Sbjct: 125 VLYASGEESESQIKSRADRIFNKIEDGVWVYSDNSMDNVLNVVSQVDPDLLIVDSIQTFI 184 Query: 184 MADVQSS-PGSVAQVRETAAYLTRFAK--TRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + S GS Q E A L + AK R A+ +VG + K +AG + LEH +D Sbjct: 185 LEGFPGSRAGSPTQTMECANELLKLAKDPVRPRAVFLVGQMNKSEEIAGLRALEHLVDTV 244 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD--EVTSGS 298 ++LDGD + R L KNRFG+ E G F+MTE GL + NPS F++ D E SG Sbjct: 245 LILDGDNEEELRGLSVSKNRFGSTWERGYFSMTENGLESIDNPSEYFMTSRDKNEKVSGC 304 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ VV +G+RP++VEI++LV + P R+ + + +L L+++L + G + + D+DV Sbjct: 305 ALTVVKDGSRPIIVEIESLVSKTYTPYPSRIGECVRREQLNTLISILEQRGRISLYDKDV 364 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + GG+K E + +L++++++VSS+ D+ +P D +VGL GE++ VPS + RI E Sbjct: 365 VIKTTGGLKFKEPAVNLSIIMSIVSSVYDKEIPNDTAFISDVGLTGELKKVPSLELRIRE 424 Query: 419 AAKHGF 424 + GF Sbjct: 425 LDRRGF 430 >UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltransferase n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF42_PETMO Length = 423 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 242/385 (62%), Gaps = 17/385 (4%) Query: 65 KLSDISL--EELP---RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 K+ DI +ELP + T F+E D VL GG+V G+ L+ G+PG GKSTLL Q + Sbjct: 24 KVPDIVFLDQELPPAKKIPTNFQEIDNVLNGGLVEGAVYLLSGDPGIGKSTLLAQ----I 79 Query: 120 AQQMKT-----LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPK-- 172 A+ ++T YV+GEES +QV R +RL + N+ ++ E +++ I E+ K Sbjct: 80 AKSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIFENNVDVILNALEKSNMKSS 139 Query: 173 LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 ++ IDS+Q + + + SSPGS+ QVRE+ + +AK + + +V+VGHV K+G++AGPKV Sbjct: 140 VIFIDSVQTLKIDSIDSSPGSILQVRESTRKMVEYAKKKNIPVVLVGHVNKEGAIAGPKV 199 Query: 233 LEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD 292 LEH +DC + ++ + S R L+ KNR+G +E+ +F +T++GL+ + N ++ FLS Sbjct: 200 LEHMVDCVLQMELEGGSGLRLLKVTKNRYGPTDEVVLFEITQKGLKPIDNINSFFLSDYS 259 Query: 293 EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQ 352 SG+++ +V G + L +EIQALV + + +PRRV G+ +RL +++AVL + L Sbjct: 260 N-ESGNTLTIVKVGQKLLPIEIQALVSNPVYGSPRRVTSGIPLDRLLMIIAVLSKKLKLP 318 Query: 353 MADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 + +D+FV+ GG+++ ++S D+A+ L+++SS+ D PL + FGE+GL G IR +P Sbjct: 319 LESKDIFVSSAGGLRINDSSMDVAIALSLISSIFDTPLSSSTIAFGEIGLDGRIRGIPLL 378 Query: 413 QERISEAAKHGFRRAIVPAANVPKK 437 ++R+ + K GF ++P P+K Sbjct: 379 EKRLELSQKIGFNNIVIPKNLSPRK 403 >UniRef50_B5W8S1 DNA repair protein radA n=2 Tax=Arthrospira RepID=B5W8S1_SPIMA Length = 573 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/305 (47%), Positives = 203/305 (66%), Gaps = 2/305 (0%) Query: 150 NLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209 +L +L ET +E I E +P L +IDSIQ ++ A + S+PGSVAQVRE + L + AK Sbjct: 245 DLFLLPETDLEVILRELESLKPTLAIIDSIQTIYFASLTSAPGSVAQVRECTSALMQVAK 304 Query: 210 TRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGV 269 + +++VGHVTKDGSLAGP+VLEH +D + +GD + R LRS KNRFGA +E+GV Sbjct: 305 RENITLLIVGHVTKDGSLAGPRVLEHLVDTVLYFEGDRFASHRLLRSMKNRFGATHEIGV 364 Query: 270 FAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRV 329 F M GL+EVSNPS +FL D+ + G++ +V EGTRP++VEIQALV + + RR Sbjct: 365 FEMVSHGLQEVSNPSELFLGNRDDCSPGTATIVSMEGTRPIVVEIQALVSPASYGSARRT 424 Query: 330 AVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRP 389 G++ +RL +LAVL + G+ ++ D V VGG+KV E +ADL + +A+V+S RDR Sbjct: 425 TTGVDSSRLMQILAVLEKRVGIPLSKLDAIVASVGGLKVDEPAADLGVAIAIVASFRDRL 484 Query: 390 LPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKK 449 + ++ GEVGL G++RPV + R+ EAAK GF+RAIVP P+ GMQI V + Sbjct: 485 VDPRTILIGEVGLGGQVRPVSQLELRLREAAKLGFKRAIVPKGQKPEDL--GMQILPVGR 542 Query: 450 LSDAL 454 + DA+ Sbjct: 543 VIDAI 547 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 14/153 (9%) Query: 5 PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQ 64 P+ +VC ECGA++ ++ G+CS C AWN++ E + SP + +R S +G+ + Sbjct: 4 PRTLYVCRECGAEFSQYFGRCSNCQAWNSLVEQVVEPSPTPSL-QRFSWSELGSGLTEDT 62 Query: 65 -------------KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 KLS IS + R +G+ E DRVLGGG+VPGS +LIGG PG GKSTL Sbjct: 63 VNKPNQGQPRLSFKLSQISDQTQSRIPSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTL 122 Query: 112 LLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL 144 LLQ L+ + LYV+ EES QQV +R+ RL Sbjct: 123 LLQVANSLSHHARVLYVSAEESGQQVKLRSQRL 155 >UniRef50_C9M763 DNA repair protein RadA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M763_9BACT Length = 441 Score = 273 bits (699), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 172/394 (43%), Positives = 245/394 (62%), Gaps = 9/394 (2%) Query: 66 LSDISLEELP---RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQ 121 L+ S+ ++P R +G E DRVLGGG VPG +L+GG PG GKSTLLLQ + A Sbjct: 20 LTPESIRDIPAPVRTPSGIGELDRVLGGGWVPGGVVLLGGQPGIGKSTLLLQVCGAMTAA 79 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 K +YV+GEES Q+ +RA RLG+ D L + T I++ + + L+V+DS+Q Sbjct: 80 GSKVIYVSGEESAGQLGLRAARLGVLHDGLEVCCHTVIDEALQLVSDH--ALLVVDSVQA 137 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 M D PG+ QVR A FAKT GV V+VGH+TK+G LAGP +LEH +D + Sbjct: 138 MRAQDEDGWPGTPTQVRAVAQRCLDFAKTSGVPTVLVGHITKEGRLAGPMLLEHMVDTVI 197 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 + G+ S +RTLR+ KNR+G +ELG+F M +GL EVS+PS ++ +R D SG ++ Sbjct: 198 MFSGEKTSLYRTLRASKNRYGGTDELGIFEMGGEGLVEVSDPSYLYWNRSDSTVSGVAMT 257 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 V+ EG+RPL+ EIQAL S A PRR+ +G+ N+L +LLAVL GL D++ N Sbjct: 258 VLLEGSRPLVAEIQALAAQSEFAYPRRMGMGVGANKLQLLLAVLESRCGLPAGKSDLYCN 317 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 V GG++V + +ADLA+ A+ S++ P+ D + EVGLAGE+RPV + R+ EA + Sbjct: 318 VAGGLEVRDPAADLAVAAALASAVSGVPIGPDCCLLAEVGLAGELRPVTALGSRLKEAER 377 Query: 422 HGFRRAIVPAANVPKKAPEG-MQIFGVKKLSDAL 454 GFRR I+ + K+AP G +++ + L D L Sbjct: 378 LGFRRVIISSRE--KEAPCGQLELIRLATLGDVL 409 >UniRef50_B7FVI7 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7FVI7_PHATR Length = 500 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 178/490 (36%), Positives = 258/490 (52%), Gaps = 66/490 (13%) Query: 7 RAFVCNECGADYPRWQGQCSACHAWNTITE--VRL----AASPMVARN---------ERL 51 R +C CG+++ +W G+C C WNT+ E VR A+ P+ N L Sbjct: 10 RIHICGNCGSEFVKWMGRCPTCREWNTLQEHAVRREPASASRPVFGTNISSSGARPASWL 69 Query: 52 SGYAGSAGVAKVQKLSDI------SLEELPRFSTGFK-------EFDRVLGGGVVPGSAI 98 G GS G +++D+ S L R + + E + VLGGG++PGS Sbjct: 70 DGIPGSLGSNAPVRITDLVSSDDGSTNTLSRLHSSQRVTIPNDDELNVVLGGGIMPGSLN 129 Query: 99 LIGGNPGAGKSTLLLQTLCKLA----------------QQMKT-----------LYVTGE 131 LIGG+PG GKSTL+LQ +A +T YV+GE Sbjct: 130 LIGGDPGVGKSTLMLQIAGAVASLAIPTPGIGMGLPDSNNTRTKSSTDGTGGPVWYVSGE 189 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM-ADVQSS 190 E+ Q+A RA RLG+ L +L ET ++ +C P L+VIDSIQ M + SS Sbjct: 190 ENPDQIASRASRLGILQSELWLLGETHVDTLCQQVVVHAPALIVIDSIQTMVCDSGGSSS 249 Query: 191 PGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADS- 249 G + QVRE A L R AK+ + I +VGHVTK+G +AGP+ +EH +DC + L+G A + Sbjct: 250 AGGITQVRECVALLLRLAKSTRIPIFLVGHVTKNGDVAGPRTVEHMVDCVLYLEGSAHND 309 Query: 250 --RFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR--GDEVTSGSSVMVVWE 305 R LR+ KNRFG+ +E+GV+ MT L VS+PS++FL+ E G ++ + E Sbjct: 310 GLNLRMLRASKNRFGSSDEVGVYEMTAGRLLPVSDPSSLFLAHRVTQEDAEGCAIAIALE 369 Query: 306 GTRPLLVEIQALV--DHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 G R + VE+QAL S RR G+ +RL +L+ VL + G+ M QDV++NV Sbjct: 370 GMRAMTVEVQALATPSGSTTGYGRRTVEGIAMSRLNLLIGVLQKRCGVFMFKQDVYINVA 429 Query: 364 GGVKVTE---TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 G +++ + DL + +A+VSSL + D GEVGL GE+R V + +R++EA Sbjct: 430 GRIRLDRGEGNAVDLGVAVALVSSLATIAVRSDTAFVGEVGLLGELRSVAALPKRLAEAR 489 Query: 421 KHGFRRAIVP 430 + GF R I P Sbjct: 490 RMGFSRVITP 499 >UniRef50_D0N9B5 DNA repair protein radA n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9B5_PHYIN Length = 412 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 191/356 (53%), Gaps = 52/356 (14%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRL---------AASPMVARNERLSGYAGSA- 58 F C CG + +WQGQCSAC W ++ + AAS R +R ++ ++ Sbjct: 39 FRCQNCGQSFVKWQGQCSACSHWGSVESSKPSEPLFRQSNAASFTKNRPKRSVAWSRTSH 98 Query: 59 -----GVAKVQKLSDISLEEL-PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 + +++++ L+ R +E + VLGGG+V GS L+ GNPG GKST Sbjct: 99 ETFEENPPRALRMNEVELDTFVERIQLPERELNWVLGGGLVAGSLTLVAGNPGVGKST-- 156 Query: 113 LQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPK 172 + LYV+GEES+ QV MRA RLG +D+L + SET+++ + + E + Sbjct: 157 ---------ERGVLYVSGEESVLQVRMRAERLGSVSDSLFVASETNLDSVFQLLEGGSRR 207 Query: 173 LM-----------VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV 221 + V+DSIQ ++ D+ S G+V QV+E L R AK+R V ++++GHV Sbjct: 208 AVGDEGYHGFGAVVVDSIQTVYAEDILSPAGTVNQVKECTLRLLRLAKSRNVPVILIGHV 267 Query: 222 TKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVS 281 TK G +AGPKVLEH +D V L+GD S R LR KNRFG +E+GVF MT++GL+ + Sbjct: 268 TKSGDIAGPKVLEHIVDTVVQLEGDPQSARRFLRCQKNRFGNTSEVGVFNMTDEGLQPLP 327 Query: 282 NPSAIFLSRGDEVT--------------SGSSVMVVWEGTRPLLVEIQALVDHSMM 323 NP F+S DE G SV + EG RP+ +EIQAL + + Sbjct: 328 NPLTAFVSSHDEDDENPETREETELEPLDGCSVTIAMEGKRPIPLEIQALANRTQY 383 >UniRef50_UPI0000382A4B COG1066: Predicted ATP-dependent serine protease n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382A4B Length = 305 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 112/244 (45%), Positives = 162/244 (66%) Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 + LYVTGEES QV +RA R+G L + +ET + + E +P L+V+DS+Q + Sbjct: 33 RVLYVTGEESAGQVRLRAERVGALAPGLLLAAETDLATVLGHIEATEPDLLVVDSVQTIA 92 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 A V+ +PG V+QVRE AA L AK R + +++VGHVTKDGS+AGP+ LEH +D Sbjct: 93 SAQVEGAPGGVSQVREVAASLIAAAKARDLPVILVGHVTKDGSVAGPRTLEHLVDVVCQF 152 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD SR R +R+ KNR+G +E+G F +TE G+ +++PS +FLS G+ V V Sbjct: 153 EGDRHSRLRLVRAVKNRYGPTDEVGCFDLTENGIVGLADPSGLFLSHTGAGVPGTCVTVT 212 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EG RPL +EIQ+LV S + NPRR G++ +RLA++LAV+HRH G+++ DQDV+ + V Sbjct: 213 LEGRRPLALEIQSLVVPSSLTNPRRTTSGVDSSRLAMILAVMHRHAGVRLVDQDVYASTV 272 Query: 364 GGVK 367 GG + Sbjct: 273 GGAQ 276 >UniRef50_B5Y8V7 DNA repair protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8V7_COPPD Length = 407 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 225/419 (53%), Gaps = 35/419 (8%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 K + C+ CG G+C C + T + P +A ER ++ + K QK Sbjct: 4 KSQYECSNCGYVSSVKLGRCPQCGQFGTF----IVRKP-IAEQERKVNFSYTK---KPQK 55 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 + P F E + VLGGG+ GS +L+GG PG GKSTL LQ L Sbjct: 56 TT-------PTF---LPELNFVLGGGLKSGSVLLLGGEPGIGKSTLALQILGN--ADTDA 103 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185 +YV+ EE+ +QV RA R+GL N+N++SE+ + + L + L+ +DS+Q + Sbjct: 104 VYVSSEETREQVLERAERIGL--RNINVVSESDLGAVDL----DNYGLICVDSLQTIRFG 157 Query: 186 DVQSSPGSVAQVRETAAYLTRFAK-TRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 D+ +PGS A V+E A YL ++AK + G+A++ V HVTK+G +AGP+ +EH +D + L+ Sbjct: 158 DM-GAPGSPAMVKEIAGYLVKWAKESNGIALI-VAHVTKEGVIAGPRTVEHMVDVVLYLE 215 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 GD S R L+ KNRFG + + M GL PS + +S D +G + V Sbjct: 216 GDRTSDKRLLKLVKNRFGPSTDQILLEMQSSGL----TPSEVEVSGLDRNQTGLVLSAVN 271 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 GTR V++ ALV S P+R++ NRL +L AV+ ++ L + D++V++ Sbjct: 272 TGTRFEFVQVHALVTDSYGQIPKRLSSRYPNNRLLLLTAVMQKYLRLPLYKYDIYVDLTT 331 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR-PVPSGQ-ERISEAAK 421 V + D A++ A+ SSL++ P+ + +V+GEV L G+IR P P Q +R+ A+ Sbjct: 332 DFFVNDYGVDAAIVAAVYSSLKEMPISGNTLVYGEVLLTGDIRSPHPETQLDRLVRGAQ 390 >UniRef50_C1TS01 Putative uncharacterized protein (Fragment) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS01_9BACT Length = 222 Score = 180 bits (457), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 142/218 (65%), Gaps = 1/218 (0%) Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D +L GD S +RTLR+ KNR+G +E+G+F M E+GL V +PS ++ RGD+ G Sbjct: 1 DTVLLFSGDDGSPYRTLRATKNRYGGTDEVGLFQMGERGLNPVDDPSGLYWDRGDQSVPG 60 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 ++ VV EG+R L+ E+QAL + A PRR A G N+L +LLAVL + GL + D Sbjct: 61 VALTVVMEGSRALVAEVQALAASTSFAYPRRTARGTSVNKLHLLLAVLQKRCGLTSSGLD 120 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 V+VNV GG+ + + ADLAL L++ SS DR LP D + GEVGL GEIRPV +R+ Sbjct: 121 VYVNVAGGMDLRDPGADLALALSLASSAMDRALPSDCCLLGEVGLVGEIRPVGRTGQRLR 180 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 EAA+ GFR A+V +A ++AP GM + V+ L++A++ Sbjct: 181 EAARLGFRSAVV-SAREKEEAPRGMDVMAVRSLAEAMA 217 >UniRef50_C0DC21 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DC21_9CLOT Length = 172 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 41 ASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILI 100 +SP A + +G A K LS+I L+E R STGFKE DRVLG G+V GS +L+ Sbjct: 9 SSPSGAASSLGAGRRSLAPAVKPALLSEIDLQEQDRISTGFKELDRVLGDGIVNGSLVLV 68 Query: 101 GGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSI 159 GG+PG GKSTLLLQ LA + + LY++GEESL+Q+ MRA+R+G +L L ET++ Sbjct: 69 GGDPGIGKSTLLLQVCRHLAGAEHRVLYISGEESLKQIKMRANRIGQVQGDLRFLCETNL 128 Query: 160 EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAA 202 ++I E E+P+++VIDSIQ M+ +V S+PGSV+QVRE+ + Sbjct: 129 DRIDRTIEAEKPEIVVIDSIQTMYREEVSSAPGSVSQVRESTS 171 >UniRef50_C1TLA8 Putative uncharacterized protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLA8_9BACT Length = 242 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 139/254 (54%), Gaps = 13/254 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + +VC+ECG G+C C W T+ L+ V+ R SG + Sbjct: 1 MAKKNEVRYVCSECGYVSLSPMGRCPGCGEWGTVEAEVLS----VSTEGRKSGSS----- 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + S + L+ R +G E DRV+GGG V G +L+GG PG GKSTLLLQ LA Sbjct: 52 -PLSPRSILGLKPPKRLPSGIGELDRVMGGGWVEGGVVLLGGQPGIGKSTLLLQVCGNLA 110 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LYV+GEES QVA+RA RLG ++ L +L +E + L+VIDS+ Sbjct: 111 RSGSKVLYVSGEESASQVALRASRLGADSEGLELLCIADVEMA--LGSLNDHGLVVIDSV 168 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q M PG+ +QVR TA AK++G+ +V+VGH+TK+G +AGP +LEH +D Sbjct: 169 QAMKDPGEGGWPGTPSQVRATAQRCIDTAKSKGIPMVLVGHITKEGRIAGPMLLEHMVDT 228 Query: 240 SVLLDGDADSRFRT 253 +L G +RT Sbjct: 229 VLLFSGRRRVSYRT 242 >UniRef50_UPI00019062BC DNA repair protein RadA n=1 Tax=Rhizobium etli IE4771 RepID=UPI00019062BC Length = 188 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 2/151 (1%) Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 + G++V EGTRP+LVE+QALV + + PRR VG + RL+++LAVL H G+++ Sbjct: 2 SPGAAVFAGMEGTRPVLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRLG 61 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DV++NV GG +++E +ADLA+ A+VSSL LP D V FGEV L+G IRPV + Sbjct: 62 QHDVYLNVAGGYRISEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGAIRPVAHTAQ 121 Query: 415 RISEAAKHGFRRAIVPAAN--VPKKAPEGMQ 443 R+ EA K GF A++P+A+ +PK + M+ Sbjct: 122 RLKEAEKLGFSTALLPSASAELPKGSGGAME 152 >UniRef50_C6NU33 DNA repair protein RadA (Fragment) n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU33_9GAMM Length = 189 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 106/190 (55%), Gaps = 14/190 (7%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV-- 63 K FVC ECG P+W G+C C AWN++ E R+ER AGS+ A Sbjct: 5 KALFVCQECGGTSPKWLGRCPDCGAWNSLVE---------QRSERSQVRAGSSAYAVASS 55 Query: 64 -QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 + L+ I+++ R TG E DRVLGGG+V G+AIL+GG PG GKSTL+LQ L++ Sbjct: 56 PEYLNAIAVDATTRQHTGLGELDRVLGGGLVAGAAILLGGEPGIGKSTLMLQIAEGLSRS 115 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV- 181 + LYVTGEES QVA+RA RL + + + +++E E I + + I S Sbjct: 116 QRVLYVTGEESSAQVALRARRLRVQAETIRVVAENRWELIADFWSRKPSVVWWIHSTSTH 175 Query: 182 -MHMADVQSS 190 +H D+ S+ Sbjct: 176 SLHRPDLASA 185 >UniRef50_C0B7I7 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7I7_9FIRM Length = 154 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 8/129 (6%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K F C CG + +W GQC C WN+ E + S A +A Sbjct: 1 MAKAKKSVFFCQNCGHEESKWLGQCPMCKEWNSFVEECVTTSNTAA--------VKAAKE 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ LS++ E R +T KE DRVLGGG+VPGS IL+GG+PG GKSTLLLQ KLA Sbjct: 53 IRIVPLSEVKTENEERVTTEIKELDRVLGGGIVPGSLILVGGDPGIGKSTLLLQVCQKLA 112 Query: 121 QQMKTLYVT 129 ++ + T Sbjct: 113 KKKNERFCT 121 >UniRef50_UPI0001902794 DNA repair protein RadA n=1 Tax=Rhizobium etli 8C-3 RepID=UPI0001902794 Length = 125 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 75/132 (56%), Gaps = 11/132 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA + F+C CGA + RW G+C C WNTI E PM SG + Sbjct: 2 MAKA-RTQFICQNCGAVHNRWAGKCDNCGEWNTIVE----EDPMGGIG---SGPGKTPKK 53 Query: 61 AKVQKLSDIS--LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 + L+ +S +EE PR T E DR LGGG V GSA+LIGG+PG GKSTLL+Q Sbjct: 54 GRPVALTALSGEIEEAPRIHTAMSELDRTLGGGFVRGSAVLIGGDPGIGKSTLLMQAAAA 113 Query: 119 LAQQ-MKTLYVT 129 L+++ + +YV+ Sbjct: 114 LSRRGHRIIYVS 125 >UniRef50_C0D1P1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1P1_9CLOT Length = 99 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 70/99 (70%), Gaps = 1/99 (1%) Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG+K+ E + DLA+++A++SS +DRP+ +++FGEVGL+GE+R V ++R+ EA Sbjct: 1 MNIAGGMKMNEPALDLAIVMALMSSYKDRPVDPRMLIFGEVGLSGEVRAVSQAEQRVREA 60 Query: 420 AKHGFRRAIVPAANVPKKAP-EGMQIFGVKKLSDALSVF 457 AK GF I+P + K P EG+++ GV+ + +A+ + Sbjct: 61 AKLGFTACILPQVCLEKMKPVEGIKLHGVRNVREAIGLL 99 >UniRef50_A8I6M1 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I6M1_CHLRE Length = 536 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 139/353 (39%), Gaps = 130/353 (36%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLG 145 +VLGGGVVPG+ +L+GG+PG GKST+ LQ V M Sbjct: 208 QVLGGGVVPGALVLLGGDPGVGKSTITLQV-----------------RPDAVVM------ 244 Query: 146 LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 D++N + S+ Q +PG+V Q+RE L Sbjct: 245 ---DSINTVYLGSLPQ----------------------------APGTVTQIRECGQLLL 273 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 R AK +A+ ++GH S L +SR + + Sbjct: 274 RLAKDHRIALFIIGH-------------------SALF---LESRMADAEGGADGADDLA 311 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVD------ 319 V +T QG R + LVE+QALV Sbjct: 312 ASSVVGVTMQGSRAI------------------------------LVEVQALVSPLGERA 341 Query: 320 -HSMMANPRRVAVGLEQNRLAILLAVLHRH-GGLQMADQDVFVNVVGGVKVTETSADLAL 377 + A R A G+++ RLA L A+L +H L++A+ V VNV V + ++DLA+ Sbjct: 342 AAAASALSYRSATGVDKGRLATLCAILDKHVPTLELANCSVIVNV-----VRDVASDLAI 396 Query: 378 LLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP 430 +A+ +S + +P+DL V GE R+ EAAK GFRR ++P Sbjct: 397 AVAVAASYYNVAVPRDLAVCGE-----------RLDVRVREAAKLGFRRVVIP 438 >UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYM2_9FIRM Length = 684 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +VL G + D DV +NV+GG + SA A+L A+VS++ ++PL QD+ V GE+ L Sbjct: 521 SVLRHLTGKSIHDYDVHINVIGGGNIDGPSAGTAILAALVSAVTEKPLRQDVAVTGEISL 580 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE---GMQIFGVKKLSDALSVF 457 AG +RPV E+ A + G R ++P N K PE G+ I V+ +A +V Sbjct: 581 AGRVRPVGGVFEKAYGAKQAGIRTLVIPKEN-DKDIPEGHLGLDIHAVETAEEAFAVL 637 >UniRef50_B0TA55 ATP-dependent lon protease n=22 Tax=Clostridia RepID=B0TA55_HELMI Length = 658 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 4/119 (3%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V R G ++AD D+ VNVVGG + SA LA+ L++ S++++ PL QD+ V GE+ L Sbjct: 529 SVFRRLAGKELADFDLHVNVVGGGNIDGPSAGLAIFLSVYSAIQEIPLWQDVAVTGEISL 588 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE---GMQIFGVKKLSDALSVFD 458 G ++ V E+I A + G RR ++P N K P G+++ V+ + +AL++ + Sbjct: 589 RGGVKAVGGIFEKIYGARQAGIRRVLIPKEN-EKDVPSDLTGIEVIPVETVDEALALIE 646 >UniRef50_Q0SPS3 ATP-dependent protease n=25 Tax=Clostridia RepID=Q0SPS3_CLOPS Length = 619 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 1/109 (0%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V+ R + D D+ VNV+GG K+ SA A+ + ++S+L ++P+ QDL + GE+ L Sbjct: 501 SVIKRLTDKDINDYDIHVNVIGGGKIDGPSAGAAITICIMSALLEKPIRQDLAITGEISL 560 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLS 451 G+I+PV E+I A + G + VP N + P+G++ VK +S Sbjct: 561 RGKIKPVGGIFEKIYGARRKGIKLVTVPKDN-ENEIPKGLEDIEVKAIS 608 >UniRef50_B5ISK3 KaiC domain protein n=5 Tax=Thermococcaceae RepID=B5ISK3_9EURY Length = 452 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 24/155 (15%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESL 134 + STG KE D +L GGV GS LI G G GK+T L + Q K +Y++ EES+ Sbjct: 236 KISTGIKELDAILDGGVYRGSITLIVGMTGTGKTTFGLHFAIANALQGRKAIYISFEESV 295 Query: 135 QQVAMRAHRLGLPTD-----NLNMLS-----ETSIE---QICLIAEEEQPKLMVIDSIQV 181 Q+ A R G+P D L M S +T + +I I +E +P+++VIDS+ Sbjct: 296 GQLKRAARRYGMPVDEVLDKTLKMFSWVPEAKTPVHTFLKIREIIDEHKPEVLVIDSLTS 355 Query: 182 M--HMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 + HM + ++ + YL+ K GVA Sbjct: 356 LREHMNE--------TELEKMLRYLSLIIKQYGVA 382 >UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LV6_SYMTH Length = 466 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 31/224 (13%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK-TLYVTGEESL 134 R STG + D VLGGG+ P SA L+ G PG GK+TL +Q LC+ A++ + Y T EE Sbjct: 4 RLSTGVEGLDSVLGGGLFPASATLVRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEEFP 63 Query: 135 QQVAMRAHRLGLPTDNLNM---LSETSIEQICLIAEEEQP-------------KLMVIDS 178 +Q+ A LG L L +++ + E +P + +V+DS Sbjct: 64 EQIYRDARELGFDLQALEQAGKLQVITLDPGAFLDEAIRPGGLLEELKREIGLRRVVVDS 123 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 + ++ +A + R T YL R A R A ++ V + GP E+ +D Sbjct: 124 VTLLELALAEKGG------RRT-LYLLRNALHRMGATSLL--VEEGAPAEGPSAAEYMVD 174 Query: 239 CSVLLDGD--ADSRFRTLRSHKNRFGAVNELG--VFAMTEQGLR 278 + L D +R R L K+R G+ G VF ++ +G+R Sbjct: 175 TVLHLTYDDFEVNRLRHLEVRKHR-GSPFRTGKHVFVISRRGIR 217 >UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepID=C5A470_THEGJ Length = 449 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 19/196 (9%) Query: 65 KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-M 123 + ++ +++ R TG +FD +LGGG GS LI G G+GK+ L +A+Q Sbjct: 227 RFAERNIQTKERIKTGIPKFDELLGGGFYKGSINLIAGPTGSGKTIFALTIASNMAKQGF 286 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDN--LNMLSE--TSIEQICLIA---EEEQPKLMVI 176 + LY+T EE+L + LGL D ++++ E T I+ LI E +++ I Sbjct: 287 RVLYMTFEEALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEILFI 346 Query: 177 DSIQVM--HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 DSI M HM + + +R YL +K + + ++M +++++ +L Sbjct: 347 DSISAMQSHMEE----EDFIKAIR----YLQLLSKEKNITLIMT-YLSQNSNLLQSTGFS 397 Query: 235 HCIDCSVLLDGDADSR 250 +D +L + SR Sbjct: 398 TLMDTITILSYELPSR 413 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 16/120 (13%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC-KLAQQMKTLYVTGEESLQQV 137 TG D+ L GG G++ILI GNPG GK+ L + L + + +K Y++ E+ +Q Sbjct: 6 TGIPGLDKALSGGFSRGTSILIAGNPGTGKTHLAVHVLFNNMKKGLKGAYISFAETKRQF 65 Query: 138 AMRAHRLGLP------------TDNLNMLSETSIEQICLIAE---EEQPKLMVIDSIQVM 182 A GL D L M E + + + + E +P ++V DSI V+ Sbjct: 66 YQNAMESGLNFEEAEKKGVFKFYDMLTMPKEEMKDFLDFLIQDLVEWKPDIIVFDSITVL 125 >UniRef50_C6Q2E8 Peptidase S16 lon domain protein (Fragment) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2E8_9CLOT Length = 225 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 80/154 (51%), Gaps = 4/154 (2%) Query: 307 TRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAI--LLAVLHRHGGLQMADQDVFVNVVG 364 TR +++I +V+ ++N R + R ++ ++ V+ R+ GL + D+ +N G Sbjct: 44 TRKGVLKITGIVEEEEISNQNRKMIRTSTARCSVENVITVIERNFGLNCDEYDIHINFSG 103 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G V SA +++ A+ S++ + P+ ++ + GE+ + G++R V ++ A K G Sbjct: 104 GAPVDGPSAGISIATAVYSAINNIPVSNEVAMTGELSIHGDVRAVGGVNAKVQAAKKAGA 163 Query: 425 RRAIVPAANVPKKAP--EGMQIFGVKKLSDALSV 456 + I+P N + +G+++ VK + + + + Sbjct: 164 KVVIIPDENWQQSFSKLDGIKVITVKNIKEVIKI 197 >UniRef50_B6YWB4 ATPase n=3 Tax=Thermococcus RepID=B6YWB4_THEON Length = 234 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEE 132 + R STG K D++L GG++PG L+ G PG GK+TL +Q L + + LYVT EE Sbjct: 1 MERISTGIKGLDKMLEGGLIPGRTYLVKGGPGTGKTTLTIQFLTEGVKNGEDVLYVTLEE 60 Query: 133 SLQQVAMRAHRLGLPTDN 150 SL+ + +LG D+ Sbjct: 61 SLKTLKEDMSKLGFNLDD 78 >UniRef50_Q58812 Putative protease La homolog n=5 Tax=Methanocaldococcus RepID=LONH_METJA Length = 649 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 K+ SA A+ LA++S+L D PL QD + G + L+G + + E+I A ++GF+R Sbjct: 545 KIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKR 604 Query: 427 AIVPAAN-VPKKAPEGMQIFGVKKLSDALSVFDDL 460 I+P AN + EG++I VK L + + + DL Sbjct: 605 VIIPEANMIDVIETEGIEIIPVKTLDEIVPLVFDL 639 >UniRef50_C4V1V9 ATP-dependent protease n=2 Tax=Selenomonas RepID=C4V1V9_9FIRM Length = 713 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V+ R G + D D+ VNV+GG + SA A+L A+VS++ + Q++ V GE+ L Sbjct: 587 SVMRRLTGRDLHDYDLHVNVIGGGNIDGPSAGTAILTAIVSAVTGAAVQQNVAVTGEISL 646 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE---GMQIFGVKKLSDALSVF 457 GEIRPV E+ A + G I+P N K PE G+ I +K +A +V Sbjct: 647 QGEIRPVGGVFEKAYGARQAGISTLIIPWEN-KKDIPEDHLGLTIHRLKTAEEAFAVL 703 >UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC Length = 482 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 19/168 (11%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQ 135 R STG + D +L GG++ SA L+ G PG GK+TL L L Q L++ +E + Sbjct: 7 RVSTGLEALDHILSGGLIKQSAYLVRGGPGQGKTTLGLHFLAAADGQSSPLFIGFQEPEE 66 Query: 136 QVAMRAHRLGLPTDNLNMLSETSIEQ---------ICLIAEEEQPKLM--VIDSIQ---- 180 Q+ + A +G+ N LS T E + A+ EQ L V+++++ Sbjct: 67 QLRVNAESVGIDISNFRFLSLTPEEHFFTEQQSYDVFAAADVEQEPLAKSVMETVERAIP 126 Query: 181 ----VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 V M ++ V Q R+ R+ + RG I+ ++ + Sbjct: 127 THVFVDSMTQLRFLSADVYQYRKQVLSFLRYFRERGATILFTSELSAE 174 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 20/170 (11%) Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKT 125 +++ +E R+STG ++ D++LGGG+ G+ LI G G GKSTL + + A Q K Sbjct: 234 ANLGEDERWRWSTGIEKLDKILGGGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKA 293 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQI-----------CLIA---EEEQP 171 EE + + RA L + N + +EQ+ L++ EEE Sbjct: 294 AIYLFEEEIDALLHRASSLSIDLKNPLREGQIKLEQVEPLRYLTDEFATLVSQEVEEEGV 353 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV 221 +L+V+DSI A + + G + + L + RG ++++V + Sbjct: 354 ELIVLDSI-----AGFELTLGGDEEAKRALHALAKSLSRRGASVLLVNEI 398 >UniRef50_C9KM28 ATP-dependent protease, Lon family n=3 Tax=Clostridiales RepID=C9KM28_9FIRM Length = 651 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V+ + G + D DV +NV+GG + SA A+L +VS++ R + QD+ V GE+ L Sbjct: 531 SVMRQLTGKDIHDYDVHINVIGGGNIDGPSAGTAILACIVSAVTGRRIRQDVAVTGEISL 590 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE---GMQIFGVKKLSDALSVF 457 AG +RPV E+ A + G + ++P N + PE G+ I V+ +A + Sbjct: 591 AGRVRPVGGVFEKAYGARQAGIKTLVIPKEN-ERDIPEDLLGLDIHAVETAEEAFQLI 647 >UniRef50_Q74NJ8 NEQ349 n=1 Tax=Nanoarchaeum equitans RepID=Q74NJ8_NANEQ Length = 600 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%) Query: 350 GLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 G + + D++V V + E SA LA+ LA +S+L PL Q V+ G + + G + P Sbjct: 481 GKDIKEYDIYVQFVQTYEEIEGDSASLAIALATISALTKTPLDQSFVITGSIDVKGRVLP 540 Query: 409 VPSGQERISEAAKHGFRRAIVPAAN---VPKKAPEGMQIFGVKKLSDALSV 456 V +I A + GF+ I+P N VPK+ + I+GV + +AL++ Sbjct: 541 VGGIIPKIEGAIEEGFKNIIIPKQNLKDVPKEYFNNINIYGVSTIDEALNL 591 >UniRef50_Q2IEE4 Putative circadian clock protein, KaiC n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEE4_ANADE Length = 494 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 25/138 (18%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK-TLYVT--G 130 L R STG + D+VLGGG+ S ++ G PG+GK+ L LQ L A+Q K +LY T Sbjct: 10 LERVSTGVEGLDQVLGGGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKRSLYFTTLS 69 Query: 131 EESLQQVAMRAHRLGLPTDNLNMLSE-----------------TSIEQICLIAEEEQPKL 173 E SL+ V H G + +L E ++ + EE +P L Sbjct: 70 EPSLKLV---RHMQGFRFFDPRLLDEKVRIVDLGSRLRAHDPAAALATVVERVEESEPDL 126 Query: 174 MVIDSIQVMHMADVQSSP 191 +VIDS + +H D+ P Sbjct: 127 VVIDSFKALH--DLSREP 142 >UniRef50_A4VNI0 Circadian oscillation regulator n=49 Tax=Bacteria RepID=A4VNI0_PSEU5 Length = 508 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 32/179 (17%) Query: 72 EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTG 130 +E R STG + D +LGGG+ P L G+PG+GK+T+ LQ L + + + + LYVT Sbjct: 13 DEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLYVTL 72 Query: 131 EESLQQVAMRAHRLGLPTDNLNM-------------------------LSETSIEQICLI 165 E+ ++ + A R G D +++ LSET+ +Q+ Sbjct: 73 SETKAELELVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETT-QQVFDR 131 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 E P ++ DS+ M + + SP + R L F TR ++++ T + Sbjct: 132 VSETNPTRVIFDSLSEMRL--LAQSP---LRYRRQVLALKHFFTTRRCTVILLDDQTSE 185 >UniRef50_A6UPI7 Peptidase S16, Lon-like protease n=1 Tax=Methanococcus vannielii SB RepID=A6UPI7_METVS Length = 685 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 342 LAVLHRHGGLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 L + L +A+ ++++ K+ SA A L+++SSL + PL QD + G + Sbjct: 564 LNITKTKEDLDLAEHEIYIQFSQSYSKIDGDSATAAACLSIISSLLNIPLKQDFCITGSL 623 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVFDD 459 L G+I + E+I+ A ++GF+R I+P +N+ E +++ V+KL + + + + Sbjct: 624 DLNGDILAIGGVNEKINAAKEYGFKRVIIPKSNLEDVIDTESIRVIAVEKLEEIIPLVFE 683 Query: 460 L 460 L Sbjct: 684 L 684 >UniRef50_A6UWQ4 Peptidase S16, Lon-like protease n=6 Tax=Methanococcus RepID=A6UWQ4_META3 Length = 703 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%) Query: 351 LQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPV 409 L + +D+F+ K+ SA A+ L ++SSL PL QD + G + L G+I + Sbjct: 592 LDLDTKDIFIQFSQSYSKIDGDSATTAVCLCILSSLLKIPLKQDFAITGSLDLNGDILAI 651 Query: 410 PSGQERISEAAKHGFRRAIVPAANVPKKAP-EGMQIFGVKKLSDALS-VFD 458 E+I+ A ++GF+R IVP +N+ EG+++ K L + + VFD Sbjct: 652 GGVNEKINAAKEYGFKRVIVPQSNMIDVIDVEGIEVIPAKTLGEIIPIVFD 702 >UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G8K6_CHLAD Length = 565 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 20/190 (10%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT--LYVTGE 131 +P+ TG + FD + GGGV G LI G PG GK+ +TL A Q L+V+ E Sbjct: 6 IPKAPTGIRGFDEITGGGVPRGRPTLICGGPGCGKTLFAFETLVHGAAQHDEPGLFVSFE 65 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICL-------IAEEEQPKLMV-----IDSI 179 ES + G +L IEQI L + E + L + ID I Sbjct: 66 ESPNDLRTNFASFGFNITDLEQRGALLIEQIPLDQSDWAEVGEYDLEGLFIRLGLLIDRI 125 Query: 180 QVMHMA-----DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 +A + S+ + + +R L R+ + RG+ ++ + + +L+ + E Sbjct: 126 GAKRIALDTIEALFSAFRNESLLRSELQRLFRWLRQRGLTALITAE-SNNTNLSRFGIEE 184 Query: 235 HCIDCSVLLD 244 DC +LLD Sbjct: 185 FVADCVILLD 194 >UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12XV7_METBU Length = 301 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 15/121 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEE 132 + R STG D +L GGV GS++++ G PG GK+TL +Q L + + K L+ + EE Sbjct: 59 IKRVSTGVAGLDDMLEGGVPKGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFEE 118 Query: 133 SLQQVAMRAHRLG-----------LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 + Q+ R G L ++ML + E+I I E +P+ +V DS+ V Sbjct: 119 RIPQLIQHFMRFGWDLGSHIDDGYLEIFGMSML---TFEEIGEIIETYKPQRIVFDSLNV 175 Query: 182 M 182 Sbjct: 176 F 176 >UniRef50_P42425 ATP-dependent protease La homolog n=146 Tax=Firmicutes RepID=LON2_BACSU Length = 552 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 7/130 (5%) Query: 327 RRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLR 386 + +A G +N L +L R G++ +D D+ +N GG+ + SA +A+ + S++ Sbjct: 405 KSMAKGSVENVLTVL-----RTMGMKPSDYDIHINFPGGIPIDGPSAGIAMAAGIFSAIH 459 Query: 387 DRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK--KAPEGMQI 444 P+ + + GE+ L G ++P+ +I A + G ++ I+P N K +G++I Sbjct: 460 KIPIDNTVAMTGEISLNGLVKPIGGVIPKIKAAKQSGAKKVIIPYENQQAILKQIDGIEI 519 Query: 445 FGVKKLSDAL 454 VK + L Sbjct: 520 IAVKTFQEVL 529 >UniRef50_Q0AB05 Putative circadian clock protein, KaiC n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AB05_ALHEH Length = 492 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 35/203 (17%) Query: 74 LP-RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEE 132 LP R S+G D++L GG++ L+ G PG GK+TL L L + +TL++ +E Sbjct: 15 LPERVSSGVAGLDQILDGGLIARRGYLLRGGPGLGKTTLGLSFLTAAGEGERTLFIGFQE 74 Query: 133 SLQQVAMRAHRLGLPTDNLNMLS------------------ETSIEQICLI------AEE 168 ++ A +GL T + LS + +EQ +I E Sbjct: 75 LEAELRANAATVGLDTRGIEFLSLAPTEEFFAGSETYDVFAASDVEQAPMIDTVVEAVER 134 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 QP + IDS+ + + Q R+ L RF RG +V T + S+ Sbjct: 135 IQPHRVFIDSLTHLRLVSADR-----YQFRQQVVSLLRFLVERGATVVF----TSESSME 185 Query: 229 GP-KVLEHCIDCSVLLDGDADSR 250 P L+ D + L+ SR Sbjct: 186 NPDDDLQFLADGVINLEAGPSSR 208 >UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSF7_CHLT3 Length = 574 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 37/233 (15%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM--KTLYVTGE 131 LP+ TG K D VL GG+ G + ++ GN G GK+ L ++ L + QQ L+V+ E Sbjct: 18 LPKCPTGIKGLDEVLFGGIPKGRSTMVLGNAGCGKTLLAMEFLVQGIQQFGAHGLFVSFE 77 Query: 132 ESLQQVAMRAHRLG-----------LPTDNLNMLSETSIE-----------QICLIAEEE 169 E + + G L +L++ +E ++ ++ Sbjct: 78 EKKEDLLEDMQSFGWNLEAAEQSGALLIKHLDLGDSEFLESGEYDLGGLFVRLEFAIDKI 137 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAG 229 K +V+D+++ + ++ +V +R L R+ K++GV +++ G G Sbjct: 138 GAKRVVLDTVETLF-----TTYKNVGALRTEFRRLIRWLKSKGVTVIITGETDSYGK-TR 191 Query: 230 PKVLEHCIDCSVLLDGDADS-----RFRTLRSHKNRFGAVNELGVFAMTEQGL 277 + DC V LD + R R L+ ++ F NE F ++EQGL Sbjct: 192 HGIEAFVSDCVVQLDNRIQNQVPTRRLRVLK-YRGSFHGTNEYP-FIISEQGL 242 Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 29/169 (17%) Query: 68 DISLEELPRFSTGFKEFDRVLGG-GVVPGSAILIGGNPGAGKSTL---LLQTLCKLAQQM 123 D++ + +P +G D +LGG G GS++L+ G G GKS+L Q C + Sbjct: 255 DVATDFVP---SGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACGRGE-- 309 Query: 124 KTLYVTGEESLQQVAMRAHRLGL--------------PTDNLNMLSETSIEQICLIAEEE 169 K LY+ EES+ Q+ +G+ PT + E + ++ + E Sbjct: 310 KCLYLNMEESVWQIVRNMRSIGVELEPFIEKGLLLFEPTRSTMCGLEYHLVKLIKLLETY 369 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 +P+ ++ID + + G +V+ + L + K R + +M Sbjct: 370 EPQHLIIDPVSSF------LAVGESIEVKSMMSRLIDYLKMRHITTIMT 412 >UniRef50_B2JVR0 Non-specific serine/threonine protein kinase n=6 Tax=Burkholderia RepID=B2JVR0_BURP8 Length = 504 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 26/159 (16%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESLQQ 136 STG KE D +LGGG++PG++ L+ G G GK+T ++ L L + Y+ +E+L+ Sbjct: 259 STGVKELDALLGGGLIPGTSTLLVGPSGVGKTTTSVRCALTALQRGEAVKYLLFDETLRT 318 Query: 137 VAMRAHRLGLPTDNLNMLSETSIEQIC--------------LIAEEEQPKLMVIDSIQVM 182 + R+ +L + D + S++QI E++ ++V+DS+ Sbjct: 319 LMSRSRQLDMALDGYIDNGQLSLQQIDPAEMSPGQFATVVREAVEQDGASMVVLDSLN-- 376 Query: 183 HMADVQSSPGS---VAQVRETAAYLTRFAKTRGVAIVMV 218 A +Q+ PG + Q+ E +YL + +GV ++V Sbjct: 377 --AYMQAMPGHRYLLLQMHELLSYLNQ----QGVTTLLV 409 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT-LYV 128 S +E R STG D VL GG++P L+ G PGAGK+TL L L ++ ++ LY+ Sbjct: 11 STDEPGRISTGVAGLDDVLNGGLIPNRIYLVEGVPGAGKTTLGLHFLLDGIRRGESGLYI 70 Query: 129 TGEESLQQVA--MRAHRLGL 146 T E+ ++A R+H L Sbjct: 71 TLSETAVELAAVARSHHWSL 90 >UniRef50_Q48N05 Circadian oscillation regulator KaiC homolog n=6 Tax=Gammaproteobacteria RepID=Q48N05_PSE14 Length = 515 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 30/173 (17%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT-LYVTGEES 133 P STG FD +L GG+ L+ G PGAGK+TL LQ L + ++ LY+T E+ Sbjct: 22 PIVSTGNAGFDSILKGGLPNNRLYLLEGTPGAGKTTLGLQFLLDGVKAGESVLYITLSET 81 Query: 134 LQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE------------------------ 169 +++ AH G D +++ +S E++ E+ Sbjct: 82 SEELESAAHSHGWSLDGIDLFEFSSTEEVLGDEYEQSILHPWEAELGDTIKLIQQRVDKL 141 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT 222 QP+ +V DS+ M + + P + R L ++ R + +++V +T Sbjct: 142 QPRRLVFDSLSEMRL--LAQDP---LRYRRQVLALKQYFAGRDITVLLVDDLT 189 >UniRef50_C8W5T4 Sigma 54 interacting domain protein n=10 Tax=Firmicutes RepID=C8W5T4_DESAS Length = 575 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 333 LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ 392 + +N + +L VL R + D D+ VN GG + SA +A+ +A+ S++ P+ Sbjct: 413 MARNSVENVLTVLQRVTEVDPRDYDIHVNFPGGGPIDGPSAGVAIAVAVYSAITCLPVDN 472 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK--KAPEGMQIFGVKKL 450 L + GEV + G ++PV ++ A G + +P N+ ++ +G++I V++L Sbjct: 473 KLAITGEVSIRGMVKPVGGVMAKVEAACLAGAEKVFIPKENLHDIYRSIDGIEIIAVERL 532 Query: 451 SDAL 454 + L Sbjct: 533 EEVL 536 >UniRef50_D2RH30 Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RH30_ARCPR Length = 471 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 30/167 (17%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R S+G + D +L GG +P + LI G PG+GK+T L L + + L++T E Sbjct: 4 RISSGIESLDIILNGGFLPKRSYLIRGGPGSGKTTFCLHFLIEGVKNNENVLFITFGEPS 63 Query: 135 QQVAMRAHRLGL-----------PTDNLNMLSET-------------SIEQICLIAEEEQ 170 +++ A +GL P++ + +T +++ I E+ + Sbjct: 64 EKIKENAKAIGLSPEGIVFLDLAPSEEFFVKDQTYDIFSPADVERGPTVKTIVETVEKVK 123 Query: 171 PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVM 217 P +VIDS+ + +P V Q R+ L F RG ++ Sbjct: 124 PSRVVIDSVTYLRFL----AP-DVYQYRKQVLSLIDFLTDRGATVLF 165 Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 40/188 (21%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL-YVTGEESL 134 + STG KE D + GG+ + +I G G GK+TL ++ + A + + + Y EE Sbjct: 243 KISTGIKELDEMTNGGINRQTITVISGAAGTGKTTLAMRIAYEAALRGENVTYYAFEEDP 302 Query: 135 QQVAMRAHRLGLPTDNLNMLSETSIEQICL-----IAEEE------------QPKLMVID 177 + RA ++G+ + + L E S+ +I A EE KL++ID Sbjct: 303 AIILSRAKKVGM--ERIRELVEKSLIKIVFAESLKFAPEEALHITLKDLRERNTKLVIID 360 Query: 178 SIQVMHMA---------DVQSSPGSVAQVRETAAYLTRF-AKTRGVA----------IVM 217 S+ +A +Q+ ++ T + F A +RG I++ Sbjct: 361 SLNGAELALVGAEDKRRPIQAILRNLVANGATVILIDEFEANSRGFTRLGVSYLADNIIV 420 Query: 218 VGHVTKDG 225 +GH KDG Sbjct: 421 LGHYVKDG 428 >UniRef50_C1VAG2 RecA-superfamily ATPase possibly involved in signal transduction n=2 Tax=Halobacteriaceae RepID=C1VAG2_9EURY Length = 248 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 74 LPRF-STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT--LYVTG 130 +P F TG + D +L GG+V +A+LI GNPG GKS L LQ L + +Y+T Sbjct: 1 MPEFVKTGVEGLDSILNGGIVKNAAVLISGNPGTGKSILGLQYLYNGVDKYDEGGIYLTF 60 Query: 131 EESLQQVAMRAHRLGL 146 EE+ + A +G Sbjct: 61 EEAEDDIQEAAESIGF 76 >UniRef50_O28184 DNA repair and recombination protein radB n=3 Tax=Archaeoglobaceae RepID=RADB_ARCFU Length = 221 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 25/200 (12%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGE----ESL 134 TG K D +LGGGV G+ I G+ G GK+TL L A+Q K Y+ E E + Sbjct: 8 TGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFKVAYIDTEGLSGERV 67 Query: 135 QQVAMRAHRL--GLPTDNLNMLSETSI-----EQICLIAEEEQPKLMVIDSIQVMHMADV 187 +Q+ RL + + + + E++C E+ KL+++D ++ +++ Sbjct: 68 RQI-FGDERLFSNVFVYEVYRFRQQGVAIQEAEKLC---RSEKVKLVIVDCFTSLYRSEL 123 Query: 188 QSSPGSVAQVRETAAYLTRF---AKTRGVAIVMVGHVTKD-GS-----LAGPKVLEHCID 238 + + RE + LT A+ VA+V+ + D GS L GP LEH Sbjct: 124 EDDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFTDVGSGVDRPLGGPS-LEHLSK 182 Query: 239 CSVLLDGDADSRFRTLRSHK 258 + L+ + R TL H+ Sbjct: 183 VIIALERSNELRKATLIKHR 202 >UniRef50_Q742I0 Putative uncharacterized protein n=1 Tax=Mycobacterium avium subsp. paratuberculosis RepID=Q742I0_MYCPA Length = 314 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 43/242 (17%) Query: 69 ISLEEL------PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 I+L+EL R S G+ D +L GG+ +I G PG GKSTL ++ C A+ Sbjct: 48 ITLDELSAPRPTKRISVGWA--DGLLNGGMPARKFAMIYGQPGVGKSTLTVEFACAAAKM 105 Query: 123 MKTLYVTGEESLQQVAMR--------AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLM 174 + T+Y + +R AHR+ P + +++ +I+ A E +++ Sbjct: 106 VTTVYAASPDEHDPPDVRSPGDIVRLAHRIDAPLAGVYVVTVDTIDDAIAAATEVGARML 165 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 V+DS+ D + + ++R + + A + VG G AG + Sbjct: 166 VVDSVNACADFDARRMKAGMRKLRA-------WCRDNDAAAMGVGMYDTAGRRAGGYSVA 218 Query: 235 HCIDCSVLLDGD-------------------ADSRFRTLRSHKNRFGAVNELGVFAMTEQ 275 + D + LD + D R L K RFG V + V MT Sbjct: 219 YGADAILDLDVEQTPERDKLAELLVDEEIPTEDLSLRRLTLWKCRFGPVGQQ-VLRMTGG 277 Query: 276 GL 277 GL Sbjct: 278 GL 279 >UniRef50_D2RVL7 Putative circadian clock protein, KaiC n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RVL7_9EURY Length = 362 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 25/190 (13%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGE 131 +LPR G + DR++ GGV S ++ G+ G GK+T LQ L LA+ +++T E Sbjct: 131 DLPRLELGIEGLDRMIQGGVPERSLLVAMGSAGTGKTTFGLQFLEHGLARGENAVFITLE 190 Query: 132 ESLQQVAMRAHRLGLPTDNL-----------------NMLSETSIEQICLIAEEEQPKLM 174 ES ++V A G P D N L + E LI E + +L Sbjct: 191 ESRRRVIDSATEKGYPFDEYLAEDRLAVVDVDPIEMANSLQSITNELPTLIEEFDAARL- 249 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK-VL 233 V+DS+ ++ M A R TR K GV ++ +++ A ++ Sbjct: 250 VLDSVSLLEMM-----YEDRATRRNEIYDFTRSLKEAGVTALLTSEASEESPYASRYGIV 304 Query: 234 EHCIDCSVLL 243 E+ D +L Sbjct: 305 EYLTDAVFVL 314 >UniRef50_Q1QT32 Putative circadian clock protein, KaiC n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT32_CHRSD Length = 483 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 40/233 (17%) Query: 72 EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTG 130 EELP G E DR+ GGG+ G+ +I G G GK++L LQ + + A++ +++ T Sbjct: 239 EELP---CGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTF 295 Query: 131 EESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLI--------------AEEEQPKLMVI 176 EES+ + R +G+P ++ SI+++ + E++ +++++ Sbjct: 296 EESIGTLRTRCEAIGIPVSDMMAKGSLSIDEVEPLHYSPDEFAWRVRTEVEQQGARMVML 355 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV---- 232 DS+ QS G + A L + GV +++ V + ++AG ++ Sbjct: 356 DSLAGFR----QSVRGD--DITAHAHALCHYLSNMGVTVLL---VNEQSAIAGEELRPSE 406 Query: 233 --LEHCIDCSVL-----LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 + + D VL LDG L+ F L F +T +GLR Sbjct: 407 DDINYLADTIVLLRYMELDGGLRKAIGILKKRTGDF--EKTLREFQITREGLR 457 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQ 135 R S +R+L GG +PG + L+ G PG GK+TL LQ L A L G ES + Sbjct: 8 RISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADGNGLLISLG-ESER 66 Query: 136 QVAMRAHRLGLPTDNLNML 154 + A R+GL D +++ Sbjct: 67 NLRADALRIGLSLDGTSVI 85 >UniRef50_Q9XW87 Protein Y75B8A.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q9XW87_CAEEL Length = 773 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 353 MADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + DQD+ V++ G V SA L A+VS + PL D V GE+ L G + P+ Sbjct: 652 LEDQDIHVHLPAGAVNKDGPSAGTGLACALVSLATNIPLRSDAAVTGEISLTGHVLPIGG 711 Query: 412 GQERISEAAKHGFRRAIVPAAN 433 +E++ A + G RR ++P +N Sbjct: 712 VKEKVLAAQREGLRRVVLPKSN 733 >UniRef50_C7NVJ6 Putative circadian clock protein, KaiC n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NVJ6_HALUD Length = 489 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGE 131 +L R STG D VL GG+V G +L+ G PGAGK+ L L +A ++LYV Sbjct: 2 QLSRLSTGVAGLDAVLDGGLVRGRNVLVRGTPGAGKTIFGLYFLSAGIAADERSLYVNLG 61 Query: 132 ESLQQVAMRAHRLGLPTD-----NLNMLSETSIEQ----ICLIAEEEQPKLM-----VID 177 E V A L T+ NL+ SE EQ + AE +QP + V+D Sbjct: 62 EPQAYVEETADAFDLQTEGIHFHNLSPTSEQFAEQESYDVFESAEVDQPDFIDSLRTVVD 121 Query: 178 SIQ-----VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 ++ + + + + Q R+ L + K G +++ G + Sbjct: 122 EVEPDRVLLDPITEFRYLTSDERQFRKGILGLLDYLKDVGATVMLTSQA---GETVTDED 178 Query: 233 LEHCIDCSVLLDGDADSR------FR--TLRSHKNRFGAVNE 266 L+ +D V L+ DSR FR + R K+ +G +E Sbjct: 179 LQFLVDGVVSLEVVQDSRAVQVSKFRGSSFRRGKHFYGIDDE 220 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 23/161 (14%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQ 135 S+G E D +LGGG+ G+ ++ G GAGK+T +Q L + A + + + EE+ + Sbjct: 242 LSSGVPELDSLLGGGIDRGTVTILSGPTGAGKTTTGVQFLTEAALDKTEGVLFQFEEAER 301 Query: 136 QVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI------------DSIQVMH 183 + RA +G+P T IE+ CL E +P + D ++++ Sbjct: 302 TIRKRADAIGIPL-------RTVIEEGCLSIVEIEPDEYTVGEFEQLIREAVDDGVELVM 354 Query: 184 MADVQSSPGSVAQVRE-TAAYLT--RFAKTRGVAIVMVGHV 221 + Q ++ + + TAA L R+ ++ GV+ ++V V Sbjct: 355 IDGTQGFKQNLRGLEDPTAALLRVGRYLRSAGVSTILVNEV 395 >UniRef50_D2EGM1 Putative circadian clock protein, KaiC n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGM1_9EURY Length = 237 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 30/168 (17%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGE 131 E+ R +TG D L GG S + + G PGAGK+T Q L + A++ K LY T E Sbjct: 9 EIERETTGIPGLDEALNGGFPKSSVVFLTGTPGAGKTTFSFQFLLEGAKKGEKGLYFTLE 68 Query: 132 ES----LQQVAMRAHRLG------------LPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 ES +QQ M ++ +P + + + E ++ +A K +V Sbjct: 69 ESQDDLMQQFMMVDSKIKDYIEKGLIKIVTIPLVDYDSMKEFISSELDAMA----AKRLV 124 Query: 176 IDSIQVMHM--ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV 221 +DSI + M +D+ S +R+ L+ K R + +G + Sbjct: 125 VDSITYLQMFFSDIMS-------IRKAVIELSNIIKARDCTAIFIGEM 165 >UniRef50_O26878 Putative protease La homolog type 1 n=30 Tax=Archaea RepID=LONH1_METTH Length = 644 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 A++ ++ G +++ D+ + + E SA +++ A++S+L + P+ Q + + G + Sbjct: 494 ALIKKYTGTDISNYDIHIQFLQAYDGVEGDSASVSVATAVISALEEIPVDQSVALTGSLS 553 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-----VPKKAPEGMQIFGVKKLSDAL 454 + G++ PV +I AA+ G R+ ++PA+N + KK + ++I V+ L D L Sbjct: 554 IRGDVLPVGGVTGKIEAAAEAGIRKVLIPASNMGDVMIEKKYEDMVEIVPVETLGDVL 611 >UniRef50_A6TM65 Sporulation protease LonB n=3 Tax=Clostridiaceae RepID=A6TM65_ALKMQ Length = 564 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 54/100 (54%) Query: 341 LLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 +L V+ ++ + D D+ +N GG+ + SA + ++ A+ S++++ + L + GE+ Sbjct: 415 VLTVIRKYLNVDPRDYDIHLNFPGGIPIDGPSAGITMVTAIFSAIKNLSIDSQLAMTGEI 474 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE 440 + G+++PV +I A + G R ++P N ++ E Sbjct: 475 SIRGKVKPVGGITAKIEAAKEAGCTRVLIPKDNYQERFKE 514 >UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Tax=Methanomicrobiales RepID=RADB_METMJ Length = 224 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 25/225 (11%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL-LLQTLCKLAQQMKTLYVTGE--- 131 R STG FD +LGGG+ + I G P +GKSTL L+ + L +Y+ E Sbjct: 5 RVSTGSTAFDDLLGGGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYIDTEGFS 64 Query: 132 -ESLQQVAMRAHRLGLPTDNLNMLSETSI-EQICLIAEEE-------QP-KLMVIDSIQV 181 E Q+A G D L + +Q +IA+ E P L+V+DS Sbjct: 65 VERFTQIA--GENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDSATA 122 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD------GSLAGPKVLEH 235 ++ ++ ++ ++ L AK + +++ + D L G LEH Sbjct: 123 LYRTELDLGREAIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDVERDRVAGLGGT-ALEH 181 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREV 280 + L+ +R LR H++R ++ F +TE G+R V Sbjct: 182 LSKAIIRLEKKDSARRAMLRKHRSRPEGLSF--DFTITEDGIRTV 224 >UniRef50_A5UNJ6 ATP-dependent protease La, LonB n=2 Tax=Methanobrevibacter smithii RepID=A5UNJ6_METS3 Length = 659 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 A++ ++ ++D D+ V + E SA +++ A++S++ D P+ Q + + G + Sbjct: 503 ALIKKYTNKDISDYDIHVQFIQTYDGVEGDSASVSIATAVISAVEDIPIDQTVALTGSLN 562 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP-----KKAPEGMQIFGVKKLSDAL 454 + G++ P+ +I AA+ G ++ ++P +N+ KK + ++I + LSD L Sbjct: 563 VRGDVMPIGGATAKIEAAAESGIKKVLIPKSNMKDVMLEKKYEDMIEIVPTETLSDVL 620 >UniRef50_A2BKH9 Putative RecA ATPase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BKH9_HYPBU Length = 478 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 6/85 (7%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA--QQMKTLYVTGEESL 134 F G + D++L G + PG+ +LI GNPGAGK T+L ++C + + + LYV+ +ES Sbjct: 13 FVWGVRALDKMLVGSLRPGTTVLIAGNPGAGK-TILAASICYVNAFRGVPCLYVSLQESR 71 Query: 135 QQVAMRAHRLGLPTDNLNMLSETSI 159 ++ RLG+ N + L E + Sbjct: 72 EKFLWYMARLGM---NFSELEEKGL 93 >UniRef50_A9W785 Non-specific serine/threonine protein kinase n=12 Tax=Bacteria RepID=A9W785_METEP Length = 520 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R STG D VL GG+ P L+ G PG GK+TL LQ L + A++ ++LYVT E+ Sbjct: 29 RISTGISGLDEVLCGGLTPDRLYLLEGTPGTGKTTLALQFLLEGAARKGRSLYVTLSETA 88 Query: 135 QQVAMRAHRLGLPTDNLNM 153 ++ A G D + + Sbjct: 89 DELRAAALSHGWSLDGIEL 107 >UniRef50_B5YK35 ATP-dependent protease La 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK35_THEYD Length = 667 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 6/89 (6%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + +A++S +RP +D+ V GE+ L+G I PV +E+I A + G + IVP Sbjct: 574 SAGATIAMALISLFTNRPARRDVAVTGELTLSGRILPVGGIKEKILAAKRAGVKTVIVPY 633 Query: 432 ------ANVPKKAPEGMQIFGVKKLSDAL 454 N+P +G++I ++K+ D + Sbjct: 634 RNKVDIENLPDDFKKGVEIIFIEKIEDVI 662 >UniRef50_C9M9C7 Putative DnaB helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9C7_9BACT Length = 454 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 12/105 (11%) Query: 38 RLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSA 97 RL P ++ E L YA + + ++LP TG KE DR +GGG++PG Sbjct: 146 RLGGVPDTSQEEALEEYAATVK----------AWDDLPLARTGIKELDRAIGGGLLPGEM 195 Query: 98 ILIGGNPGAGKSTLLLQTLCKLAQQMK--TLYVTGEESLQQVAMR 140 + + G G+ K+++ L+ + +++ TLY++ + ++AMR Sbjct: 196 MALIGGEGSMKTSVALKIVDTYLREVHQPTLYISLDMRKHRIAMR 240 >UniRef50_A9WC99 Non-specific serine/threonine protein kinase n=9 Tax=cellular organisms RepID=A9WC99_CHLAA Length = 482 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R +TG D + GGG+VP A L+ G PG GK+TL L L A TL+++ EE+ Sbjct: 8 RLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLFISLEETE 67 Query: 135 QQVAMRAHRLGLPTDNLNML 154 ++ A + G+ + +++L Sbjct: 68 SKIRWNAAQTGINLNQVHIL 87 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 29/163 (17%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEESLQQV 137 +G E D +L GGV G+ LI G G GK+TL Q + + A + +++ + EE ++ + Sbjct: 247 SGVPELDELLNGGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFEEEIEIM 306 Query: 138 AMRAHRLGLPTDNLNMLSETSIEQI--------------CLIAEEEQPKLMVIDSIQ--- 180 R + +P + IE+I E+EQ K+++IDS+ Sbjct: 307 QQRCEAVNIPVRAMQKQQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMIDSVTGYR 366 Query: 181 -VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT 222 MH D+ ++Q+ + YL ++RGV + ++ T Sbjct: 367 LCMHGEDL------ISQLHALSKYL----QSRGVTVFLIMDTT 399 >UniRef50_Q9UYC6 Pab lon intein n=1 Tax=Pyrococcus abyssi RepID=LONH_PYRAB Length = 998 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 8/121 (6%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 A++ R+ G ++ D+ V + + E SA +++ A++S+L + P+ QD+ + G + Sbjct: 829 AIIKRYKGEDISRYDIHVQFLQTYEGVEGDSASISVATAVISALEEIPVRQDVAMTGSLS 888 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 + GE+ PV +I A + G ++ I+P AN P K E ++I V+++ + L Sbjct: 889 VRGEVLPVGGVTPKIEAAIEAGIKKVIIPKANEKDVFLSPDKR-EKIEIIPVERIDEVLE 947 Query: 456 V 456 V Sbjct: 948 V 948 >UniRef50_Q0W872 Predicted RecA-family ATPase n=2 Tax=Euryarchaeota RepID=Q0W872_UNCMA Length = 241 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEE 132 + R STG E D+ + GG G ++L+ G PG+GK+ + + + + Q K +Y+ EE Sbjct: 1 MERVSTGIDELDQFISGGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKCVYIATEE 60 Query: 133 SLQQVAMRAHRLG 145 L+ + +A +G Sbjct: 61 ELEDILHQAESIG 73 >UniRef50_D0LT56 Putative circadian clock protein, KaiC n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT56_HALO1 Length = 474 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%) Query: 71 LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG 130 ++ + RFS G K D + GGG + S +L+ G G+GK+ L C A + + ++ G Sbjct: 246 VQRMERFSCGTKGLDEMTGGGWLRDSIVLVRGPTGSGKTILSGMYACAGAARDERVFYYG 305 Query: 131 EESLQQVAMRAHR-LGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 E + + +R ++ LGLP + E I I E P+ M+I+ Sbjct: 306 FEETESMLLRNYQALGLPVK--KYVDEGKIRLIARFPEATSPEDMIIE 351 >UniRef50_C6A5H8 ATPase, RecA superfamily n=4 Tax=Thermococcus RepID=C6A5H8_THESM Length = 241 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MK 124 + + SL R STG K D ++GGG++PG ++ G PG+GK+TL +Q L + A+ K Sbjct: 6 MENKSLPIYSRVSTGVKGLDNLIGGGLIPGRVYVVTGPPGSGKTTLGIQFLVEGAKNGEK 65 Query: 125 TLYVT 129 +Y++ Sbjct: 66 GIYIS 70 >UniRef50_C5A1G9 RecA family AAA ATPase n=3 Tax=Thermococcus RepID=C5A1G9_THEGJ Length = 237 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESL 134 R STG D +LGGG++ G A L+ G PGAGK+ L + + + LYVT EE Sbjct: 7 RVSTGIAGLDEMLGGGLIAGRAYLVEGPPGAGKTILATHFAMAGVDRGENALYVTLEEPA 66 Query: 135 QQVAMRAHRLGLP--TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 Q+ RLG + N ++ T + + E P + +S + Sbjct: 67 DQLKEDMARLGFNVGSGNFKIVDATPVNPERSVVFSESPDIEFGESFE 114 >UniRef50_Q3ADP9 Conserved domain protein n=3 Tax=Clostridia RepID=Q3ADP9_CARHZ Length = 296 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 28/207 (13%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEE 132 + R TG + FD VLGGG+ S +I GNPG+GK+ L+ L A++ +K+LY T Sbjct: 1 MERLVTGIENFDEVLGGGIPLYSINIIAGNPGSGKTILVQNILFNAARRGLKSLYFTTVS 60 Query: 133 SLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE----------------QPKLMVI 176 Q +R DN + + + LI ++E +P ++VI Sbjct: 61 ESQFKMVRNLADFEFFDNSFLGEQIIYRDLGLILKKEGLNGAFAAVDDLMKKFRPDILVI 120 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DS + + + V S A V E A+ L + T +VG ++ + E Sbjct: 121 DSFKALR-SLVDSEKEFRAMVFELASKLAVWETT----TFLVGEYIEE---ELSTLSEFA 172 Query: 237 I-DCSVLLDGDADSRF--RTLRSHKNR 260 I D + L G + +F R LR K R Sbjct: 173 IADGIIYLYGQQERKFQKRYLRILKMR 199 >UniRef50_C7MB83 Mg chelatase-related protein n=18 Tax=Actinomycetales RepID=C7MB83_BRAFD Length = 514 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 390 LPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVK 448 +P DLV+ GE+GL G +RP+P + A HG RA+VPA N+ + + +G++ G++ Sbjct: 100 VPSDLVLLGELGLDGRVRPIPGVLPALLAARDHGVTRAVVPAENLHEARLVDGLESDGIE 159 Query: 449 KLSDALSVF 457 L+ L F Sbjct: 160 DLTALLHRF 168 >UniRef50_Q08YR0 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08YR0_STIAU Length = 429 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 14/118 (11%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R +TG K D +L GGV GS+ LI G G+GK+TL LQ + + L + LYV +E+ Sbjct: 213 RLATGVKGLDTMLQGGVWAGSSTLIEGRTGSGKTTLALQFILEGLKRGEPGLYVNFQENP 272 Query: 135 QQVAMRAHRLGLPTDN-----LNMLSETSIE--------QICLIAEEEQPKLMVIDSI 179 Q+A LG L++L + +E ++ I EE+ K + +D++ Sbjct: 273 TQLARIIQSLGWDVAEAQRMGLHLLYHSPVELQIDSILVKLFRIIEEKHIKRVAVDAV 330 >UniRef50_Q3IN66 Probable KaiC-like transcriptional regulator 1 n=2 Tax=Halobacteriaceae RepID=Q3IN66_NATPD Length = 496 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVT-GEESLQQ 136 +TG E D + GGG G+ I G PG GK+T+ L AQQ +T V EE ++ Sbjct: 250 ATGVGELDSLTGGGFEHGTTTFISGPPGVGKTTVGAYFLFWAAQQGETAAVYLFEERIET 309 Query: 137 VAMRAHRLGLPTDNL---NMLSETSIEQICLIAEE 168 R +GLP D L L T IE + AEE Sbjct: 310 FEKRCRAIGLPIDALRDDGRLKLTRIEPNAMSAEE 344 >UniRef50_Q2SRX5 ATP-dependent protease La n=4 Tax=Mollicutes RepID=Q2SRX5_MYCCT Length = 779 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 352 QMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVP 410 + D D+ ++V G V SA + L A++S+L +P+ +D + GE+ L G + P+ Sbjct: 661 KFDDIDIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIG 720 Query: 411 SGQERISEAAKHGFRRAIVPAANV------PKKAPEGMQIFGVKKLSDALSVF 457 +E+ AA+ G + ++P+ NV P++ + ++I V K D + Sbjct: 721 GLREKSISAARSGLKHILIPSKNVKDIEDIPQEVQDVLKITPVSKYEDVYEII 773 >UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprotei RepID=Q977U1_SULAC Length = 198 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R STG EFD+++ GG+ G + + G PG GK+ L + + L + +YVT EES Sbjct: 3 RLSTGIYEFDKLIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESR 62 Query: 135 QQVAMRAHRLG 145 + +A + G Sbjct: 63 DSIVKQAKQFG 73 >UniRef50_C7GBX2 Mg chelatase-like protein n=3 Tax=Clostridiales RepID=C7GBX2_9FIRM Length = 490 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 4/116 (3%) Query: 347 RHGGLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLR--DRPLPQDLVVFGEVGLA 403 ++ G + + + +N ++ + + DL + +A++++ + + ++ V GEVGL Sbjct: 34 KNCGFALPPKHITINFTPANIRKSGSGFDLPVAVAVLTAFGYIRQEMVREYFVAGEVGLN 93 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVFD 458 G+++PV ++EA + G ++ +VP N + A MQ+F VK L+DA+++ + Sbjct: 94 GKVQPVNGILPMVAEAKERGMKKCMVPWKNAGEAALVSDMQVFAVKNLADAVNILN 149 >UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=RADB_METST Length = 232 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 32/223 (14%) Query: 63 VQKLSDISLEEL-PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ 121 ++ LSDIS L P S+ D++LGGG+ G G PG+GK+ + L+ L + + Sbjct: 1 MKTLSDISESVLIPTNSS----LDKLLGGGIEKGCITQFYGPPGSGKTNIALKILYEATK 56 Query: 122 Q-MKTLYVTGE-----ESLQQVAMRAHRLGLPTDNLNMLSETSI-EQIC-------LIAE 167 K +Y+ E E +QQ+A G + N+ +L S EQI ++ + Sbjct: 57 NGSKAIYMDTEGGLSLERIQQIA--GTDFGSISKNIYILEPKSFDEQILDIQNIEDILKK 114 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSV-AQVRETAAYLTRFAKTRGVAIVMVGHV----T 222 ++ +++IDSI ++ + P + ++ A L R ++ VAIV+ + Sbjct: 115 DKSIDMLIIDSIVALYRVE-DGDPSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFD 173 Query: 223 KDGSLAGP---KVLEHCIDCSVLLDGDADS--RFRTLRSHKNR 260 D + P VL++ + ++ DS R TL+ HK + Sbjct: 174 SDDLIIEPIGGTVLKYWSKIIIEIEKSVDSLKRTATLQRHKTK 216 >UniRef50_A1WZ80 Circadian clock protein KaiC n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZ80_HALHL Length = 484 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 97/241 (40%), Gaps = 40/241 (16%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESLQQV 137 TG + D +L GG+ G L+ G PGAGK+ + L C L Q ++ T +ES + Sbjct: 22 TGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLEQGEPSVLATFDESPAAL 81 Query: 138 AMRAHRLGLP----------------TDNLNMLSETSIEQICLIA------EEEQPKLMV 175 A LG P D ++S IE L+A + K +V Sbjct: 82 TRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIELTALLARIGHALDALGAKRLV 141 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +D+I M D +PGS + T + + + R A ++ G + ++ Sbjct: 142 VDAIDGM---DESFAPGSSLRAELTRVF--DWIRERD-ATTLITSGEHSGFSERFGLEDY 195 Query: 236 CIDCSVLLDGD-ADSRF-RTLRSHKNRFGA--VNEL-------GVFAMTEQGLREVSNPS 284 DC +LL + D R R LR K R G+ NE GVF G R + PS Sbjct: 196 IADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGVFLAPITGTRLEAYPS 255 Query: 285 A 285 A Sbjct: 256 A 256 >UniRef50_Q7U9A8 Possible DNA repair protein sms homolog [truncated] n=2 Tax=Synechococcus RepID=Q7U9A8_SYNPX Length = 88 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 33/50 (66%) Query: 381 MVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP 430 M S D LP V+ GE+GL G++RPV + R+ EAA+ GFRRA+VP Sbjct: 1 MHCSAGDLTLPPGTVLVGELGLGGQLRPVGQLELRLQEAARLGFRRAVVP 50 >UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y8Q8_COPPD Length = 768 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + + AM+S+L+ P+P DL + GE+ + G++ P+ +E++ A + G R I+P Sbjct: 672 SAGITIATAMISALKKEPVPNDLAMTGEITITGKVLPIGGVKEKVLAAHRIGLDRVILPK 731 Query: 432 AN 433 N Sbjct: 732 DN 733 >UniRef50_UPI000185C693 conserved hypothetical protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185C693 Length = 221 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Query: 90 GGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEES-LQQVAMRAHRLGLPT 148 G V +LI G+ G GK+T LQ + +L Q+ K LY + EE + + + R GL Sbjct: 37 GEVERSGTLLIYGDSGHGKTTYALQLMKELCQKEKVLYNSLEEYGSKSLLVNLDRYGLKQ 96 Query: 149 DNLNM-LSETSIEQICL-IAEEEQPKLMVIDSIQ 180 N L + SI+++ L + +QPK++ IDSIQ Sbjct: 97 YNKRYNLQKESIDKMMLRLDRPQQPKIVFIDSIQ 130 >UniRef50_C0BBH8 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BBH8_9FIRM Length = 518 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 4/110 (3%) Query: 347 RHGGLQMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLP--QDLVVFGEVGLA 403 R+ G M + + +N+ V+ + DL + +A++ ++ P +D+++ GE+GL Sbjct: 64 RNAGYTMPAKKIVINLSPACVRKKGSVFDLPIAVAVLGAMGIFPEKAVEDILLAGELGLD 123 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSD 452 G+++PV + EA K GFR ++P +N + + +G+QIFG + L + Sbjct: 124 GKLQPVEGILPIVLEAKKAGFRYCVIPKSNEDEGRLAQGIQIFGAETLEE 173 >UniRef50_Q5ZWH0 DNA integration/recombination/inversion protein n=3 Tax=Legionella pneumophila RepID=Q5ZWH0_LEGPH Length = 558 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 54/253 (21%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT----LYVTGEESL 134 TG K D +L GG + L+ G+PG GK+ TL +Q+K+ +YVT +ES Sbjct: 16 TGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIF---TLFFTHEQLKSNNSVIYVTCDESP 72 Query: 135 QQVAMRAHRLGLPTDNLNMLS-------------------ETSIEQICLIAEEEQPKL-- 173 +Q+ AH G ++ L E +I + L E+ Q K+ Sbjct: 73 EQII--AHMDGFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLRIEQAQQKIKA 130 Query: 174 --MVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 ++IDS+Q + + P L F R + ++ + + ++ + Sbjct: 131 DTLIIDSLQSILLGIKNYDPN--------YELLRLFQWARQKNLTVLTTMAETQTILQTE 182 Query: 232 VL-EHCIDCSVLLDGDA--DSRFRTLRSHKNRFGA--VNELGVFAMTEQGLREV------ 280 + E+ +DC++ L D R LR KNR + NE F++T G+ + Sbjct: 183 IYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYP-FSITHNGISLLPITSTK 241 Query: 281 --SNPSAIFLSRG 291 + SA +LS G Sbjct: 242 LNTTTSAAYLSTG 254 >UniRef50_A6EJ04 Magnesium chelatase, subunit ChlI n=4 Tax=Bacteroidetes RepID=A6EJ04_9SPHI Length = 393 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Query: 350 GLQMADQDVFVNVV-GGVKVTETSADLAL---LLAMVSSLRDRPLPQDLVVFGEVGLAGE 405 GL+M Q + +N+ ++ +S DLA+ +LA + + L QD ++ GE+ L G Sbjct: 82 GLKMPRQKIVINLAPADIRKEGSSYDLAIAIGILAASGQIENEEL-QDYLIMGELSLDGG 140 Query: 406 IRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVF 457 ++P+ EA GFR ++PA N + A E +Q++G+ L + +S F Sbjct: 141 LQPIKGVLPIAIEAKNAGFRGFLLPADNSREAAIVEDLQVYGMHNLIEVISFF 193 >UniRef50_D2RXS1 Sigma 54 interacting domain protein n=7 Tax=Euryarchaeota RepID=D2RXS1_9EURY Length = 731 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 7/121 (5%) Query: 343 AVLHRHGGLQMADQDVFVNVV--GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 A++ + + ++++D+ + V G V SA + + A++S+L D P+ Q + + G + Sbjct: 572 AIIKKFSDVDLSEKDIHIQFVQAGQQGVDGDSASITVATAVISALEDIPVDQTVAMTGSL 631 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-----VPKKAPEGMQIFGVKKLSDALS 455 + G++ PV +I AAK G + I+P AN + + E ++I +S+ L Sbjct: 632 SVRGDVLPVGGVTHKIEAAAKAGCTKVIIPKANEQDVMIEDEYEEMIEIIPCSNISEVLD 691 Query: 456 V 456 V Sbjct: 692 V 692 >UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q6C269_YARLI Length = 421 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 56/252 (22%) Query: 20 RWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLS---------DIS 70 +++ Q A + T L A P RL G G V K +L+ IS Sbjct: 19 KYEDQFEAFVKYQVSTCDLLTADP------RLVGAWGEQKVLKCHQLATDLESRLSEHIS 72 Query: 71 LEE------------LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC- 117 +E L STG ++ D V+ GG G+ + G AGKS LLQ LC Sbjct: 73 MERVDFDVDSERERPLDAISTGVRKIDTVMNGGFPTGTLCEVAGESAAGKSHFLLQ-LCV 131 Query: 118 --KLAQ-----QMKTLYVTGEESLQQ---VAMRAHRLGLPTDNLNM-----LSETSIEQI 162 +LA+ K ++++ E L+ V M H + L DN+++ ++ +EQ Sbjct: 132 NVQLARGEGGLGKKAVFISTESGLETRRLVQMMDHVIKLGHDNISLHHVSFIACKDLEQQ 191 Query: 163 CLIAEEEQPKLM--------VIDSIQVMHMADVQSSPGSVA----QVRETAAYLTRFAKT 210 + + P L+ VIDS+ + ++ +S G + ++ T +L A+ Sbjct: 192 DRVFQYNLPNLLEDSSYGLVVIDSLAAHYRSEELTSKGDFSSRDKRLLRTLHHLKGLARK 251 Query: 211 RGVAIVMVGHVT 222 VA+V ++ Sbjct: 252 HNVAVVFANQIS 263 >UniRef50_P73860 KaiC-like protein 1 n=35 Tax=cellular organisms RepID=KACL1_SYNY3 Length = 568 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 32/164 (19%) Query: 76 RFSTGFKEFDRVLGG-GVVPGSAILIGGNPGAGKSTL---LLQTLCKLAQQMKTLYVTGE 131 R STG + D + GG G GS+IL+ G G GK+TL Q C + + LY+ E Sbjct: 252 RISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAFFAQATCLRGE--RCLYLATE 309 Query: 132 ESLQQVAMRAHRLGL-----------------PTDNLNMLSETSIEQICLIAEEEQPKLM 174 ES QQ+ + +GL PT N N+ E + +I +P L+ Sbjct: 310 ESPQQICRNLNSIGLDLSPYLDSQLLQFDATRPT-NYNL--EMRLFKIHSWVRNFKPSLV 366 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 V+D M+++ +S G++ Q + L + K++ + + + Sbjct: 367 VVDP-----MSNLITS-GNLNQTKNFFMRLIDYLKSQKITVFLT 404 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 30/190 (15%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT--LYVTGEESLQQ 136 TG + FD + GG+ G LI G+ G GK+ ++ L + A + + V+ EES ++ Sbjct: 15 TGIQGFDEITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVEYGEPGVLVSFEESAKE 74 Query: 137 VAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQP----------------------KLM 174 + LG +L + I+ I + A E Q K + Sbjct: 75 IIQNVASLGWNLQDLVAEEKILIDHIYVEASEIQETGEYDLEALFIRLGYAINKIGAKRI 134 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 ++D+I+V+ S + VR L + K +GV V+ G D +L + E Sbjct: 135 LLDTIEVLF-----SGLENTNIVRAELRRLFHWLKQKGVTAVITGE-RGDKNLTRQGLEE 188 Query: 235 HCIDCSVLLD 244 + DC + LD Sbjct: 189 YVSDCVIKLD 198 >UniRef50_B9L069 ATP-dependent protease La n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L069_THERP Length = 772 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 357 DVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+ V++ G E SA LAL++A+VS+L RP+ DL + GE+ L G + PV +++ Sbjct: 657 DIHVHLPEGALPKEGPSAGLALVVALVSALSARPVRSDLALTGEITLRGRVLPVGDLRQK 716 Query: 416 ISEAAKHGFRRAIVPAAN 433 + G R + PAAN Sbjct: 717 ALAVQRAGLRELVAPAAN 734 >UniRef50_D1CDU0 Non-specific serine/threonine protein kinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDU0_THET1 Length = 461 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEES 133 + + STG FD +LGGG+ GS +L+GG PG GK+ L+ Q A Q K + + + Sbjct: 1 MDKISTGIPGFDVLLGGGIPKGSFVLVGGPPGVGKTILVTQMAFHHASQGKKVVMLTALT 60 Query: 134 LQQVAMRAH 142 + AH Sbjct: 61 ETNAKLIAH 69 >UniRef50_B1C8C1 ATP-dependent protease La n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8C1_9FIRM Length = 770 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 58/109 (53%), Gaps = 7/109 (6%) Query: 356 QDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 +D+ ++V G + SA + L A++S+L +P+D+ + GE+ L+G++ P+ +E Sbjct: 658 KDIHIHVPEGATPKDGPSAGITLATAIISALTKMSVPEDIAMTGEITLSGDVLPIGGLRE 717 Query: 415 RISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVF 457 ++ A++ ++ ++P N VP + ++I VK + D + Sbjct: 718 KLLAASRARVKKVLIPKENIKDLEEVPDDIKDTLEIVPVKHMMDVYKII 766 >UniRef50_Q725X1 ATP-dependent protease La, truncation n=5 Tax=Desulfovibrio RepID=Q725X1_DESVH Length = 702 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 357 DVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+ +++ G V SA + + A+VS L RP D+ + GE+ L G + PV +E+ Sbjct: 580 DIHIHIPAGDVAKDGPSAGVTIAAALVSRLAGRPARADVALSGELSLGGSLLPVSGIREK 639 Query: 416 ISEAAKHGFRRAIVPAANVPKKA 438 + AA+ G R I+P AN P A Sbjct: 640 VLAAARGGARTVILPRANAPDVA 662 >UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TWK1_METKA Length = 316 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 30/149 (20%) Query: 56 GSAGVAKVQKLSDISLEELPR--FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 S G+ + + L+D+ EE R TG + FD +GGG+ G + + G PGAGKS Sbjct: 66 ASKGIMEAKTLADLLEEEKKRDVIPTGIQGFDERMGGGLPTGVIVGMYGPPGAGKSQFAT 125 Query: 114 QTLCK-LAQQMKTLYVTGEESLQQVAMRAHRL----GLPTDNLNMLSETSI--------- 159 Q L + LY+ E A R RL G D L +S+ + Sbjct: 126 QVAAHALKEGESVLYIDTEN-----AFRPQRLLEIGGFKKDELKEVSDRFVLRRIIDAAA 180 Query: 160 -------EQICLIAE--EEQPKLMVIDSI 179 ++ I+E E PK++VIDSI Sbjct: 181 LRQYFDEKEGEFISEAYELTPKVVVIDSI 209 >UniRef50_Q7NAM5 DnaB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAM5_MYCGA Length = 539 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 10/78 (12%) Query: 63 VQKLSDISLEELPR---------FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 + K++D LE++ +STG+ D+ L G +VPG+ ++I PG GK+ + Sbjct: 224 IDKIADSFLEKINNLVINKHNNIYSTGYPGLDKYLSG-LVPGNLLVIAARPGRGKTAFAI 282 Query: 114 QTLCKLAQQMKTLYVTGE 131 L LAQ++K+L + E Sbjct: 283 NILYNLAQELKSLKLQRE 300 >UniRef50_Q9ZJL3 ATP-dependent protease La n=17 Tax=Campylobacterales RepID=LON_HELPJ Length = 831 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 7/91 (7%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA +A+ M S L DR + ++ + GE+ L+GE+ P+ +E++ A K G + A++P Sbjct: 737 SAGIAMASVMASILCDRAIRSEVAMTGELTLSGEVLPIGGLKEKLIAAFKAGIKTALIPV 796 Query: 432 AN-------VPKKAPEGMQIFGVKKLSDALS 455 N +P + E + I VK +++ L Sbjct: 797 KNYERDLDEIPTEVRENLNIVAVKNIAEVLE 827 >UniRef50_Q5LLE1 Putative uncharacterized protein n=1 Tax=Ruegeria pomeroyi RepID=Q5LLE1_SILPO Length = 603 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 21/147 (14%) Query: 99 LIGGNPGAGKSTLLLQTLC------------KLAQQMKTLYVTGEESLQQVAM-RAHRLG 145 L+ GNPG GKS L+ + + + A + K L ++ E++ Q+V + R G Sbjct: 298 LLAGNPGMGKSLLVSRLIAAVTSGSPWPLSDECAPKGKVLLLSAEDNWQRVTLGRLLEHG 357 Query: 146 LPTDNLNMLSETSI------EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRE 199 + M+ I E + +EE+PKL+VID++ +M + +V E Sbjct: 358 ADISQIRMMQRFKILCPDNLEAMARYIDEERPKLVVIDTL-TAYMGSGRDM-NRQNEVGE 415 Query: 200 TAAYLTRFAKTRGVAIVMVGHVTKDGS 226 LT A+ G A++ +GH+ K S Sbjct: 416 FLGRLTEIAEDAGCAVLAIGHLNKQSS 442 >UniRef50_C5N2V2 Putative uncharacterized protein (Fragment) n=1 Tax=Staphylococcus aureus subsp. aureus USA300_TCH959 RepID=C5N2V2_STAA3 Length = 65 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 10/68 (14%) Query: 14 CGADYPRWQGQCSACHAWNTITE-VRLAASPMVA-RNERLSGYAGSAGVAKVQKLSDISL 71 CG P+W G+C C AWN + E V AA+P + + L+G KVQKL+ I Sbjct: 3 CGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAG--------KVQKLNSIKH 54 Query: 72 EELPRFST 79 E PR T Sbjct: 55 ETTPRVLT 62 >UniRef50_B9WC87 DNA repair protein, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9WC87_CANDC Length = 512 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 29/126 (23%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM---KTLYVTGEESL 134 STG DR LGGG+ G I G G GKS L Q L ++ K +Y++ E L Sbjct: 86 STGLPSIDRELGGGIPIGEITEIFGASGCGKSHFLFQLLSNCRKEFPTSKNIYISTESFL 145 Query: 135 QQVAMRAHRLGLPTDNLNMLSETSIEQICLI---------------------AEEEQPKL 173 + ++ +G + N+ +T ++ I I +++E+ KL Sbjct: 146 ETKRLKDF-IGTTSSNI----DTDLDSISYIYCQDLESQDHILFTQLPLKLDSDKEKTKL 200 Query: 174 MVIDSI 179 +VIDSI Sbjct: 201 LVIDSI 206 >UniRef50_Q4UA75 DNA repair (Rad51 homologue) protein, putative n=1 Tax=Theileria annulata RepID=Q4UA75_THEAN Length = 369 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL--LQTLCKLAQQM-----KTL 126 L +F+TG + D++L GGV GS I G GKS L L C+L + K L Sbjct: 102 LIKFTTGSSQLDKLLQGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCL 161 Query: 127 YVTGEESL--QQVAMRAHRLGL-PTDNLNML----SETSIEQICLIAE------EEQPKL 173 +V E + +++ A R GL P+D L+ + + + Q+ L+ E + + L Sbjct: 162 WVDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFAL 221 Query: 174 MVIDSIQVMHMADVQSSPGSVA----QVRETAAYLTRFAKTRGVAIVMVGHV 221 +++DS ++ +D S G +A + + L R A T GVA+V+ V Sbjct: 222 LIVDSATSLYRSDY-SGRGELASRQMHLCKFLRALQRIADTFGVAVVITNQV 272 >UniRef50_O67649 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67649_AQUAE Length = 246 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 18/181 (9%) Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ 121 KV+ LS++ E+P FD + GG +P + I I G GAGK+ L++ + +A+ Sbjct: 7 KVKTLSEVRDYEIPILKETV--FD-IFGG--LPQAFIGISGEAGAGKTQTLMRLMADIAK 61 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE--EEQPKLMVIDSI 179 + L V E+S + + +N+ ++ + ++Q I E + + +++VIDSI Sbjct: 62 REPVLVVLTEQSPHRWKAIFKKYDTNHENVRVVFKYYMDQ-DFIKELSQREERIIVIDSI 120 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 S S + R+ A L + + +V V K+G +AG + +EH I+ Sbjct: 121 ---------SGAVSEQKARQVAKDLRSLVEWKNKWLVGALQVRKEG-VAGGEGVEHMIEV 170 Query: 240 S 240 S Sbjct: 171 S 171 >UniRef50_D2EGD6 Peptidase S16, Lon protease n=2 Tax=Euryarchaeota RepID=D2EGD6_9EURY Length = 641 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 75/155 (48%), Gaps = 14/155 (9%) Query: 290 RGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRR-----VAVG----LEQNRLAI 340 +G + + + V+ L++ I+A+V SM RR +A G + Q + Sbjct: 440 KGSRIGRVNGLAVIENSDSGLMLPIEAIVTKSM----RRGSGEIIATGKLGEIAQEAVKN 495 Query: 341 LLAVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGE 399 + A++ + + D D+ + + E SA +++ ++++S+L + P+ Q + + G Sbjct: 496 VSAIVKLYSNKPLTDYDIHIQFLQAYSGVEGDSASVSVAISILSALTNIPIKQSIAMTGS 555 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV 434 + + GE+ PV ++ A G + I+PA+N+ Sbjct: 556 LSIWGEVLPVGGVSAKVEAAINAGIKEVIIPASNI 590 >UniRef50_O27166 Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27166_METTH Length = 470 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL---CKLAQQMKTLYVTGEESL 134 STG D +LGGGV GSA+L+ G GAGK++LL + C+ + + L+ + EE Sbjct: 247 STGIPTLDEMLGGGVYRGSAVLVSGTTGAGKTSLLSKFAYESCRRGE--RCLFFSNEEPA 304 Query: 135 QQVAMRAHRLGL 146 Q+ +G+ Sbjct: 305 DQIVRNMESIGI 316 >UniRef50_D2RE70 Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RE70_ARCPR Length = 444 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEESL 134 R +TG + D + GG GS +I G G GK+T L + A + + ++VT EES+ Sbjct: 229 RVTTGIAKLDVLTDGGFYKGSITVIAGQTGTGKTTFGLHFVYTNALRGHRAVFVTLEESV 288 Query: 135 QQVAMRAHRLGLP----TDNLNML-----SETSIE---QICLIAEEEQPKLMVIDSIQVM 182 + + G+ D LN++ SE+ + ++ I E E+P +VIDS + Sbjct: 289 GDILRSMNNYGMKYESVKDRLNIISIVPESESPVSIFVKLKEIIENEKPVALVIDSYTAL 348 Query: 183 --HMADVQSS 190 HM V+ S Sbjct: 349 EEHMDRVELS 358 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 12/109 (11%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESLQQVAMRAHRL 144 R++ GG GS ILI G PG GK+TL+ + ++ + K L+V+ E + Sbjct: 10 RIIPGGFPRGSMILIAGEPGTGKTTLVSAIAINEIKKGKKVLFVSLNEPKEDYFGTIEGF 69 Query: 145 GLPTD-------NLNMLSETSIE-QICLIAEE---EQPKLMVIDSIQVM 182 G D +L + ++E Q+ LI EE +P L+VIDSI + Sbjct: 70 GWEIDESKFKFVDLFTVGREALEAQLKLITEEIFNFKPDLIVIDSITAL 118 >UniRef50_O58221 Pho lon intein n=9 Tax=Archaea RepID=LONH_PYRHO Length = 1127 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 A++ R+ G ++ D+ V + + E SA +++ A++S+L + P+ QD+ + G + Sbjct: 960 AIIKRYKGEDISKYDIHVQFLQTYEGVEGDSASISVATAVISALEEIPVRQDVAMTGSLS 1019 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 + GE+ PV +I A + G + I+P +N P K + ++I V+++ + L Sbjct: 1020 VRGEVLPVGGVTPKIEAAIEAGIKTVIIPKSNEKDVFLSPDKRKK-IKIIPVERIDEVLE 1078 Query: 456 V 456 V Sbjct: 1079 V 1079 >UniRef50_C7DGV1 Peptidase S16, Lon-like protease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGV1_9EURY Length = 644 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 A++ +H G +A D+ V + + E SA +++ ++++S++ + P+ Q + + G + Sbjct: 504 AIIKKHIGRDVASYDIHVQFLQTYEGIEGDSASISVAISVLSAMENLPIDQSIAMTGSLS 563 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-----VPKKAPEGMQIFGVKKLSDAL 454 + G + PV ++ A G RR I+P +N + K + ++I V+ L+D + Sbjct: 564 VRGTVLPVGGVTSKVEAAIAAGMRRVIIPQSNADDVYLSKSMRKRIKIIPVRTLADVI 621 >UniRef50_D1YUH4 Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1YUH4_METPS Length = 237 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 23/159 (14%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT--LYVTGEESLQ 135 STG D +L GG+ PGSA+L+ G PG+GKS +Q + A+ L V EE+ + Sbjct: 9 STGVPGADTILNGGIYPGSAVLVSGPPGSGKSIFGMQFVYAGARDHGEGGLIVAIEETDR 68 Query: 136 QVAMRAHRLGLPT-DNL------NMLSET---------SIEQICLIAEEEQPKLMVIDSI 179 ++ A +GL D+L M+++ S+E I + + + MVID + Sbjct: 69 SLSEYAGSIGLEAWDSLVEKGAITMMTDDYFARTDLPGSLEGIMEVLGRTEARRMVIDPM 128 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 + P V + R ++ R K RG+ +++ Sbjct: 129 NLFK----YYFPQDVDRRRYLLKFI-RILKRRGITSLII 162 >UniRef50_UPI00016C4483 putative circadian clock protein, KaiC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4483 Length = 506 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 72 EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTG 130 + LP STG D VL GG+ G L+ G+ GAGK+TL LQ L + ++ KTL+++ Sbjct: 6 DSLPLVSTGVPGLDDVLCGGLPKGHLYLVEGDAGAGKTTLGLQFLLEGKRRGEKTLWISL 65 Query: 131 EESLQQVAMRA--HRLGLPTDNLNMLSET 157 E+ Q+ A HR L + L++T Sbjct: 66 SETESQLRATAASHRWDLSGVEIRNLTQT 94 >UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukaryota RepID=Q4N2W2_THEPA Length = 343 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL--LQTLCKLAQQM-----KTL 126 L +F+TG + D++L GGV GS I G GKS L L C+L + K L Sbjct: 102 LIKFTTGSAQLDKLLQGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCL 161 Query: 127 YVTGEESL--QQVAMRAHRLGL-PTDNLNML----SETSIEQICLIAE------EEQPKL 173 +V E + +++ A R GL P+D L+ + + + Q+ L+ E + + L Sbjct: 162 WVDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFAL 221 Query: 174 MVIDSIQVMHMADVQSSPGSVA----QVRETAAYLTRFAKTRGVAIVMVGHV 221 +++DS ++ +D S G +A + + L R A T GVA+V+ V Sbjct: 222 LIVDSATSLYRSDY-SGRGELASRQMHLCKFLRALQRIADTFGVAVVITNQV 272 >UniRef50_B8GX12 ATP-dependent protease La n=79 Tax=cellular organisms RepID=LON_CAUCN Length = 799 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 7/106 (6%) Query: 357 DVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 DV ++V G + SA +A+ LAMVS L P+ +D+ + GE+ L G + + +E+ Sbjct: 658 DVHIHVPDGATPKDGPSAGIAMALAMVSVLTGIPIRKDIAMTGEITLRGRVTAIGGLKEK 717 Query: 416 ISEAAKHGFRRAIVPA------ANVPKKAPEGMQIFGVKKLSDALS 455 + A + G + ++P A+VP+ +G++I V + + L Sbjct: 718 LLAALRSGVKTVLIPQENEKDLADVPQTVKDGLEIIPVSTVDEVLK 763 >UniRef50_A8SNF0 ATP-dependent protease La n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=A8SNF0_9FIRM Length = 782 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%) Query: 355 DQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 ++D+ ++V G V SA + + A+VS+L +R + + + GEV L G + + + Sbjct: 668 EKDIHIHVPEGAVPKDGPSAGITMTTAIVSALTNRKVNRQFAMTGEVTLRGRVLAIGGLK 727 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 E+I A ++G + I+P N +P++ E ++I+ V SD V D Sbjct: 728 EKILAANRYGIKNIIIPKENEVDIDEIPQEIRETLKIYTV---SDVCEVLD 775 >UniRef50_D2RQC1 Putative circadian clock protein, KaiC n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RQC1_9EURY Length = 492 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 29/227 (12%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEESLQQV 137 +G D ++G G + I G GAGK++ Q + K A+ +K+ EE +Q Sbjct: 247 SGIDGLDELIGRGFDQRTVTFISGPTGAGKTSTGTQFMAKAAENGLKSTIYLFEEDVQTY 306 Query: 138 AMRAHRLGLPTDNLN---MLSETSIEQICLIAEE-----------EQPKLMVIDSIQVMH 183 R+ +G+P L LS T IE L +EE + +++ID I Sbjct: 307 EHRSESIGIPVSRLREEGTLSTTEIEPRALSSEEFAHTVKRQIDRQGTDIVMIDGIGGYT 366 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG--SLAGPKVLEHCID--- 238 + S G + LTR+ K+RGV +++ + + S A L + D Sbjct: 367 V----SIRGDETDLIRDLHGLTRYLKSRGVTVLITNEIAEITGISSATDSNLSYVADNIA 422 Query: 239 --CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNP 283 V +DG L+ K G + L F +TE G+R V +P Sbjct: 423 FLSYVEMDGSLRKVIGVLK--KRTGGFEHTLREFEITEDGIR-VGDP 466 >UniRef50_D1CG88 DnaB domain protein helicase domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG88_THET1 Length = 341 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQ 135 + TG + DR + GG+ G+ L+GG GAGK+T LQ +A + + +Y+ E S + Sbjct: 36 YPTGIRALDRRIAGGLRRGNLFLLGGGEGAGKTTFALQIARNMAIEGVDVIYICYEHSEE 95 Query: 136 QVAMR 140 ++ +R Sbjct: 96 ELMLR 100 >UniRef50_Q4P2V5 Lon protease homolog n=4 Tax=cellular organisms RepID=Q4P2V5_USTMA Length = 1129 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 339 AILLAVLHRHGGLQMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 A L ++H + D+ +++ G + SA +A+ A+VS P+ L + Sbjct: 964 AFQLGIMHTRDS-EFPKNDIHLHLPSGAIPKDGPSAGVAMTCALVSLFTKTPISPYLAMT 1022 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP-------AANVPKKAPEGMQIFGVKKL 450 GEV L G + PV +E+++ A++ G R+ ++P A++PKK + ++I VK + Sbjct: 1023 GEVTLRGVVMPVGGIREKLTAASRAGIRKVLLPHRNRKDVEADLPKKVRDELEIKYVKTV 1082 Query: 451 SDAL 454 +A+ Sbjct: 1083 WEAM 1086 >UniRef50_Q3ADU5 DNA repair protein RadA domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADU5_CARHZ Length = 547 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 22/170 (12%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-----------QQMKT 125 T F E ++ G + G +L+ G P GKS L L C L+ + +KT Sbjct: 168 METDFPEPSWLIPGILPEGGLVLLAGKPKVGKSWLALNMACGLSNGGAVCGIPAEKAVKT 227 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSET--SIEQICLIAEEEQPKLMVIDSIQVMH 183 LY+ E++ +++ R + GL + +++S T + + L EE K I + + Sbjct: 228 LYLALEDTTRRLKTRIQQAGLTPNENSLISTTWPKLNEKGLTLLEETIKQAGIQVVIIDT 287 Query: 184 MADVQSSPGSVAQV-------RETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 +A V+ P S ++V E L A G+ +V+V H+ K S Sbjct: 288 LAKVK--PSSKSKVVSLYDNDYEMLGSLKELADRLGITVVIVHHLRKSES 335 >UniRef50_A4JD21 DnaB domain protein helicase, C-terminal domain protein n=6 Tax=Burkholderia cepacia complex RepID=A4JD21_BURVG Length = 455 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGE 131 STG+ + DR L GG+ PG ++++ PG GK++L L A L+++ E Sbjct: 183 ISTGYDDLDRALNGGLRPGWSLILAARPGMGKTSLALNIATHAAADHGVLFLSME 237 >UniRef50_A6XWS5 ATP-dependent protease La n=4 Tax=Bacteria RepID=A6XWS5_VIBCH Length = 170 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 356 QDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 +D+ V+V G + SA +A+ A+VSSL P+ ++ + GE+ L GE+ P+ +E Sbjct: 45 KDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKE 104 Query: 415 RISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 ++ A + G + ++P N +P +Q+ V+ + + L V Sbjct: 105 KLLAAHRGGIKTVLIPKDNERDLEEIPDNVIADLQVLPVQWIDEVLKV 152 >UniRef50_A9ETZ9 ATP-dependent protease La n=2 Tax=Bacteria RepID=A9ETZ9_SORC5 Length = 811 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 7/111 (6%) Query: 352 QMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVP 410 ++ +DV ++V G V SA + + +A+VS+L RP+ D+ + GE+ L G + P+ Sbjct: 679 RLQRRDVHIHVPAGAVPKDGPSAGVTMAVALVSALSGRPVRSDIAMTGEITLRGTVLPIG 738 Query: 411 SGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 +E++ A + G ++PA N +P + ++ + V L +AL+ Sbjct: 739 GIKEKVLGAHRAGIFEILLPADNEADLDDLPAEVRSSLEFYLVNTLDEALA 789 >UniRef50_Q12XJ8 KaiC domain-containing protein n=5 Tax=Methanosarcinaceae RepID=Q12XJ8_METBU Length = 239 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEE 132 + R STG K D L GG G ILI G PG+GK+ L L + K + V EE Sbjct: 1 MERISTGIKYLDDKLDGGYPKGKGILITGVPGSGKTIFGLHALDQGCIDGKKCVMVATEE 60 Query: 133 SLQQVAMRAHRLGL 146 S + + ++A LGL Sbjct: 61 SPEDILVQAEMLGL 74 >UniRef50_B4SN90 Non-specific serine/threonine protein kinase n=2 Tax=Proteobacteria RepID=B4SN90_STRM5 Length = 498 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R TG + D +LGGG+ L+ G PG+GK+TL LQ L + L + + LY+T E+ Sbjct: 6 RTVTGVEGLDSILGGGLPQARLYLLEGPPGSGKTTLSLQFLLEGLRRGERCLYITLSETA 65 Query: 135 QQVAMRAHRLGLPTDNLNMLSETSIE 160 +++ A G D L++ S E Sbjct: 66 EELREVAAAHGWSLDGLHLFELGSAE 91 >UniRef50_D1Z1M4 Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1M4_METPS Length = 254 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R TG D++ GGG + G L+ G PG GK+T LQ L + + ++VT EE+ Sbjct: 5 RLKTGIPGLDKMTGGGFLKGDTTLVTGPPGTGKTTFGLQFLMHGVLESQSGVFVTVEETP 64 Query: 135 QQVAMRAHRLG 145 +++A A G Sbjct: 65 EKIANDALNFG 75 >UniRef50_C3X6V3 ATP-dependent protease La n=2 Tax=Oxalobacter formigenes RepID=C3X6V3_OXAFO Length = 815 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 7/107 (6%) Query: 355 DQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 + ++ V+V G + SA +A+ LA+ S + ++P+ D + GE+ L G + PV + Sbjct: 691 NSEIHVHVPAGAIPKDGPSAGVAMFLALASVMMNKPVASDHAMTGEISLRGLVLPVGGIK 750 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 E++ A + G + ++PA N +P++A +Q ++ + DA+ Sbjct: 751 EKVLAALRAGIKTVMLPARNKRDLDDIPEEARNQLQFVFLETVDDAI 797 >UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borrelia RepID=LON2_BORBU Length = 813 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + + A+ S L D+ +P DL + GEV L G + PV +E++ A ++G + I+P Sbjct: 719 SAGITIATAIASILSDKKVPLDLAMTGEVTLKGFVLPVGGIKEKVLAAYRNGISKVILPK 778 Query: 432 ANVP--KKAPEGMQI-FGVKKLSDALSVFDDL 460 N K PE ++ VK +S VFD L Sbjct: 779 DNKKDYSKLPEEVKDNIDVKFVSSLEEVFDYL 810 >UniRef50_A9KNG8 Mg chelatase, subunit ChlI n=4 Tax=Clostridiales RepID=A9KNG8_CLOPH Length = 512 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 347 RHGGLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSS---LRDRPLPQDLVVFGEVGL 402 R+ G + + + +N+ VK T+ DLA+ +A++++ + + L Q L + GE+ L Sbjct: 53 RNSGYSLPPKHITINLSPADVKKEGTAFDLAIAIAILTASGYIPNDYLEQTLFI-GELSL 111 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLS 451 G+I V I A K GF+R IVP N + A G+++ GV+ LS Sbjct: 112 DGKIHRVNGILPLICTAQKQGFKRCIVPKDNAKEGAVVSGIEVIGVENLS 161 >UniRef50_C4WXJ0 ACYPI007384 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WXJ0_ACYPI Length = 191 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG+ SA + ++ A++S PL + + GE+ L G + PV +E+I A Sbjct: 71 GGIPKDGPSAGITIVCALISLFWKIPLRPMITMTGEISLNGYVLPVGGVKEKILAAYNSN 130 Query: 424 FRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 R I+P N +P E + I VK L + L + Sbjct: 131 IRTVIIPDHNMKDLKTIPNNIREDLNIIPVKHLEEVLDI 169 >UniRef50_B1ZPK0 Putative circadian clock protein, KaiC n=3 Tax=Bacteria RepID=B1ZPK0_OPITP Length = 518 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 18/140 (12%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGEESL 134 R S G E D ++GGG++ G ++LI G G GKS L Q + L + V EE Sbjct: 265 RLSVGVVELDTLMGGGILEGDSVLIAGPSGTGKSVLATQFIDTGLQAGEAGIIVVFEERP 324 Query: 135 QQVAMRAHRLGL---PTDN-----------LNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 A RA LGL P + L++ + ++++I + + +VIDS+ Sbjct: 325 AGYARRAASLGLNFQPALDAGTLEILYLRPLDLSVDETMQEILDAVKRTGAQRLVIDSLV 384 Query: 181 VMHMADVQSSPGSVAQVRET 200 MA +PG A RE+ Sbjct: 385 GFEMA---LAPGFRADFRES 401 >UniRef50_P43864 ATP-dependent protease La n=107 Tax=Bacteria RepID=LON_HAEIN Length = 803 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 38/262 (14%) Query: 203 YLTRFAKTRGVA--IVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSH-KN 259 Y TR A RG+ I + L PK+ ++ L D RF ++ +N Sbjct: 534 YYTREAGVRGLEREISKICRKAVKNLLVNPKLKSITVNSDNLHDYLGVKRFEFGKADTQN 593 Query: 260 RFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVD 319 R G V L A TE G ++ +A + +G +GS V+ E + + ++A D Sbjct: 594 RIGEVTGL---AWTEVGGDLLTIETASVVGKGKLSFTGSLGDVMKESIQAAMTVVRARAD 650 Query: 320 HSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALL 378 +G+ A H +D+ ++V G + SA +A+ Sbjct: 651 K----------LGIN--------AEFHEK-------RDIHIHVPDGATPKDGPSAGIAMC 685 Query: 379 LAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV---- 434 A++S L P+ D+ + GE+ L G++ P+ +E++ A + G + ++P NV Sbjct: 686 TALISCLTGNPVRADVAMTGEISLRGKVLPIGGLKEKLLAAHRGGIKTVLIPKENVKDLE 745 Query: 435 --PKKAPEGMQIFGVKKLSDAL 454 P+ + + I V+ + + L Sbjct: 746 EIPENVKQNLAIHAVETIDEVL 767 >UniRef50_D2NTN4 Predicted ATPase with chaperone activity n=2 Tax=Rothia mucilaginosa RepID=D2NTN4_9MICC Length = 512 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 347 RHGGLQMADQDVFVNVVGGVKVTETSA-DLALLLAMVSSLRDRPLPQDLVVFGEVGLAGE 405 ++ G+ + + VN+ SA DLA+++A + + + D V GE+GL G Sbjct: 54 KNTGITLTQHRLTVNLTPATLPKRGSAFDLAIVVAALQAEKKLHPSGDSVFLGELGLDGT 113 Query: 406 IRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVF 457 +RPVP + A G R IVPA N + A G Q+ G + L++ + Sbjct: 114 LRPVPGILPAVKAAVDAGHHRVIVPAENAEEAALIPGAQVSGFRCLAEVFAAL 166 >UniRef50_A2BL46 Predicted ATPase n=17 Tax=Archaea RepID=A2BL46_HYPBU Length = 274 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYV 128 S+E LP TG FD+++ GG+ G + + G PG GK+ + + + + Q K +YV Sbjct: 7 SIERLP---TGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYV 63 Query: 129 TGEESLQQVAMRAHRLGL 146 T EE+ + + +A G Sbjct: 64 TTEETRESIIKQAAMFGF 81 >UniRef50_Q0W053 Putative ATPase (KaiC family) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W053_UNCMA Length = 254 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEE 132 L + TG D +L GG V GS ILI G+ G+GK+ L LQ AQ+ K LYV+ E Sbjct: 10 LEQVKTGVDGLDILLSGGFVKGSTILISGSYGSGKTLLALQYAFYQAQRGDKVLYVSTSE 69 Query: 133 SLQQVAMRAHRLGLPTDNL 151 + ++ A L ++L Sbjct: 70 PVFKIRQFAGNLAFFDESL 88 >UniRef50_A9C2T7 DnaB domain protein helicase domain protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2T7_DELAS Length = 454 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L D+S + P +TG D++L GG+ G ++IG P GK+ L L +A+ Sbjct: 166 LQDLSEGKNPAIATGIGGLDKLLNGGMRRGEVMVIGARPKHGKTALALAMARNMARDNSV 225 Query: 126 LYVTGEESLQQVAMR 140 LY++ E + Q+ R Sbjct: 226 LYLSQEMPVNQLMHR 240 >UniRef50_C1AAM1 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAM1_GEMAT Length = 847 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA +A+ A+VS L +R + +D+ + GE+ L G + P+ +E++ A + G + I+P Sbjct: 742 SAGIAIATALVSELSNRKVRRDVSMTGEITLRGRVLPIGGVKEKVLGAHRAGIKEVIIPK 801 Query: 432 AN------VPKKAPEGMQIFGVKKLSDALSV 456 AN VP + + V+ LS+ L++ Sbjct: 802 ANEADLEDVPDEVRAQLTFHPVETLSEVLAI 832 >UniRef50_B5I9K2 KaiC domain protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5I9K2_9EURY Length = 266 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 43/219 (19%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEE-- 132 R TG + D +L GG+ G+ ILI G+ G GK+TL L+ L + A +++Y++ E Sbjct: 25 RCKTGIEGLDNILNGGIPRGNTILITGSCGTGKTTLSLEFLTRGALMGERSMYISVTEVP 84 Query: 133 --------------------------SLQQVAMR--AHRLGLPTDNLNMLSETSIEQICL 164 LQ++ ++ +L +++N+L +EQI Sbjct: 85 EKLIENMSTYEFFDKNLVKEKKLIFVDLQEIYVKLGLEKLEFTLEDVNIL----VEQIIK 140 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 + +E K +VIDSI + S Q+RE L + G ++V + Sbjct: 141 MVKELGIKRLVIDSI-----TSICYRLTSREQIREFILQLGKALSDMGCTTLLVSELLPS 195 Query: 225 GSLAGPKVLEHCIDCSVLLDGDADSR---FRTLRSHKNR 260 + +E I ++L G+ + R RT++ K R Sbjct: 196 AAGYSQYGVEEAIADGIILMGNLERRGDLLRTIQVIKMR 234 >UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DA89_9PROT Length = 774 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 7/91 (7%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + + A+ S ++ + D+ + GE+ L+G++ P+ +E++ A K ++ ++P Sbjct: 679 SAGITMATAIASIFSEKKVHSDVAMTGEITLSGDVLPIGGLKEKLIAAYKAKIKKVLIPQ 738 Query: 432 AN-------VPKKAPEGMQIFGVKKLSDALS 455 N VP + EG++I VK++ + L Sbjct: 739 KNYEKDLDDVPNEVKEGLEIVPVKRIEEVLD 769 >UniRef50_D0Y8T6 Endopeptidase La n=1 Tax=Dehalococcoides sp. GT RepID=D0Y8T6_9CHLR Length = 680 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + ++ +VSSL+ P+ DL + GE+ + G++ PV Q+++ A G + I+PA Sbjct: 582 SAGITIVTGIVSSLKKVPVRNDLAMTGEITIMGKVLPVGGIQQKVRAAYDAGVKEVILPA 641 Query: 432 ANV 434 N+ Sbjct: 642 DNL 644 >UniRef50_Q83FI8 Replicative DNA helicase n=2 Tax=Tropheryma whipplei RepID=Q83FI8_TROWT Length = 441 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL--CKLAQQMKTLYVTGEESLQQ 136 TGF FD L G+ PG ++I P GKSTL L + Q++ T++ + E Q Sbjct: 185 TGFTRFDS-LTNGLHPGQMVIIAARPSMGKSTLALDFARSAAIKQRVPTVFFSLEMGRQD 243 Query: 137 VAMR--AHRLGLPTDNL 151 +AMR + G+P N+ Sbjct: 244 IAMRLLSAETGIPLQNI 260 >UniRef50_D2RH64 Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RH64_ARCPR Length = 236 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 71 LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT-LYVT 129 E++P TG + D +L GG++ G LI G PG GK+ L + L + A++ + +Y+T Sbjct: 8 FEKIP---TGVEGLDVMLKGGLIKGRTYLIKGGPGTGKTILSMHFLVEGAKRGENVVYIT 64 Query: 130 GEESLQQVAMRAHRLGLPTDNLNM--LSETS 158 EE +V LG N+ + LS TS Sbjct: 65 LEEPENEVRENMETLGFDLSNVTIVDLSPTS 95 >UniRef50_P59966 Endonuclease PI-MboHIP n=20 Tax=Corynebacterineae RepID=DNAB_MYCBO Length = 874 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL--CKLAQQMKTLYVTGEESLQ 135 +TGF E D V G + PG +++ PG GKSTL L + C + +M ++ + E S Sbjct: 203 ATGFTELDEVTNG-LHPGQMVIVAARPGVGKSTLGLDFMRSCSIRHRMASVIFSLEMSKS 261 Query: 136 QVAMR 140 ++ MR Sbjct: 262 EIVMR 266 >UniRef50_B7FSL4 Lon protease homolog n=2 Tax=Bacillariophyta RepID=B7FSL4_PHATR Length = 882 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + ++ +M+S DRP+ DL + GEV L G++ V +E+I A + G + I+PA Sbjct: 784 SAGVTMVTSMLSLALDRPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGARRAGIKCVILPA 843 Query: 432 AN 433 AN Sbjct: 844 AN 845 >UniRef50_Q17VK6 Putative uncharacterized protein Hac prophage II orf8 n=1 Tax=Helicobacter acinonychis str. Sheeba RepID=Q17VK6_HELAH Length = 383 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVT 129 ++E++P TG + D + GG G +L+ G+P AGK+ L +Q L + Q K Y Sbjct: 146 AIEKIP---TGLRFLDDLTEGGFEVGQMVLLSGDPEAGKTLLGVQVLVQAMQTSKVTYFG 202 Query: 130 GEESLQQVAMRAHRLGLPTDNLN-MLSETSIEQICLIAE-----EEQPKLMVIDSIQVMH 183 E S+++ + G N + + S E LIA+ +E KL +IDS Sbjct: 203 FEFSVRKHMETLKKQGFQIHGRNYFIDDQSYEMNDLIAQIRSLTKEGHKLFLIDS----- 257 Query: 184 MADVQSSPGSVAQVRETAAY--LTRFAKTRGVAIVMVGHVTK 223 +Q+ A+ ET + L+ A+ V I+ + +K Sbjct: 258 QMKIQAPLLRTAEEAETIKFTSLSELARRLQVVILFIIQNSK 299 >UniRef50_C1TMM3 ATP-dependent protease La n=2 Tax=Synergistaceae RepID=C1TMM3_9BACT Length = 771 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 342 LAVLHRHGG------LQMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 + L HGG + + DV ++V G + SA + + +A++S L R D+ Sbjct: 639 MGYLKGHGGQLGLKDVDWSGLDVHLHVPEGAIPKDGPSAGITMAVAILSVLAGRRYLPDV 698 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP 435 + GE+ L G++ P+ +E+I A ++G +R IVP N P Sbjct: 699 AMTGEISLLGQVLPIGGIREKILAAKRNGIKRIIVPEGNRP 739 >UniRef50_O69300 ATP-dependent protease La n=24 Tax=Epsilonproteobacteria RepID=LON_CAMJE Length = 791 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + + A+ S D+ + D+ + GE+ L G++ P+ +E++ A K + A++P Sbjct: 697 SAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEKLIAAYKADIKTALIPR 756 Query: 432 AN-------VPKKAPEGMQIFGVKKLSDALS 455 N +P + + M+I V SD L Sbjct: 757 KNYERDLKDIPSEVRDNMEIIAVDTFSDVLE 787 >UniRef50_D2LZH6 Putative circadian clock protein, KaiC n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZH6_BACS4 Length = 476 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK--LAQQMKTLYVTGEESLQ 135 ++G + D +L GG GS+IL+ G PG GK+ L +Q L L +Y+T EE Sbjct: 6 TSGIEGLDYILNGGFPTGSSILLEGAPGTGKTILGMQFLYDGALNNNESGIYITFEEFPD 65 Query: 136 QVAMRAHRLGLPTDNLNMLSETSIEQICL 164 Q+ G +L E + IC+ Sbjct: 66 QIYNDMDSFGWDIKSLE--KENKLRVICI 92 >UniRef50_A7U110 Circadian regulator n=5 Tax=Halobacteriaceae RepID=A7U110_9EURY Length = 243 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 30/163 (18%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM--KTLYVTGEESLQ 135 STG + D +L GG+ S +L+ GNPG GKS +Q L + + +YV+ EE Sbjct: 6 STGVEGLDSILTGGITQRSTVLVSGNPGTGKSIFGIQYLHHGVSEHGERGVYVSFEEDEA 65 Query: 136 QVAMRAHRLGLP-------------TDNLNMLSE----TSIEQICLIAEEEQPKLMVIDS 178 + A +G D ML E T+++++ E+ +V+DS Sbjct: 66 DIRGAAESVGFEGFDEMVDDGDIVILDKREMLRETDFSTAVDRLLDTVEDGDFDRLVLDS 125 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFA---KTRGVAIVMV 218 + + + +E YL +F+ K G+ +++ Sbjct: 126 LSMFQLF--------FDAEQEKRTYLLKFSDILKANGLTSLLI 160 >UniRef50_O29797 Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus RepID=O29797_ARCFU Length = 443 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM--KTLYVTGEESLQQ 136 TG + FD + GG G ILI GNPG+GK+T + L + A++ LY++ ES ++ Sbjct: 6 TGIEGFDDIFGG-FYRGQIILIAGNPGSGKTTFCAKFLYEGARRFGENGLYISIGESKEE 64 Query: 137 VAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLM 174 +LG+ + L S + + ++A + LM Sbjct: 65 FYEYMKKLGMDFEKLE--KTGSFKYVEMLAPTSEDALM 100 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL-YVTGEESL 134 + +TG FD +LGGG++ G+A G G GK+ L+L +A + + Y++ EE Sbjct: 239 KIATGIDGFDELLGGGIIRGTATAFVGPSGGGKTVLMLSAAANVAINGENVTYISFEEPR 298 Query: 135 QQVAMRAHRLGL-PTDNLNMLS 155 QQ+ LG + L +LS Sbjct: 299 QQIEETLKFLGYGEVEGLEILS 320 >UniRef50_Q12V32 Circadian clock protein kinase KaiC n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12V32_METBU Length = 454 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT-LYVTG-E 131 + + S+ D +L GG SAILI G G+GK+TL +Q++ +++ + +YVT Sbjct: 1 MKQMSSEIDALDTILKGGFPKPSAILIAGPAGSGKTTLAMQSIFSASEKKEVCMYVTSLN 60 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-------------EEQPKLMVIDS 178 E + V +L N+++LS ++ I + E EE + + D Sbjct: 61 EPITMVNKFMSKLNFY--NISLLSSGTMNYIPIGTESLDKGIYTFMWNLEESIEKIKPDR 118 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 I + + + S+ A+ R R K + ++ G T+D L L H D Sbjct: 119 IVIDPITTIGSTLDEEAKRRFYYDLFLRMKKWDAL-VIATGEFTEDELLKSD--LSHVAD 175 Query: 239 CSVLLDGDADSRFRT--LRSHKNR-FGAVNELGVFAMTEQGL 277 + L D +++ R L K R G ++ F++TE+G+ Sbjct: 176 GVIYLSNDENNKRRVHHLEVLKLRGQGYISGKQPFSITEEGI 217 >UniRef50_C5AJW6 Rad553 n=1 Tax=Burkholderia glumae BGR1 RepID=C5AJW6_BURGB Length = 499 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGEESL 134 R TG D++LGGG V GS + G G GK+ L LQ L +A+ K +Y+ ES Sbjct: 255 RLDTGLPHLDQLLGGGFVRGSTTTVMGPSGVGKTLLALQFLQAGVARGEKAVYLGFYESP 314 Query: 135 QQVAMRAHRLGL 146 Q++ +A +G+ Sbjct: 315 QRLIGKAETVGI 326 >UniRef50_P0A9M1 ATP-dependent protease La n=430 Tax=cellular organisms RepID=LON_ECOL6 Length = 784 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 356 QDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 +D+ V+V G + SA +A+ A+VS L P+ D+ + GE+ L G++ P+ +E Sbjct: 662 RDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKE 721 Query: 415 RISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 ++ A + G + ++P N +P + I VK++ + L++ Sbjct: 722 KLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTL 769 >UniRef50_B9L019 ATP-dependent protease La n=8 Tax=Bacteria RepID=B9L019_THERP Length = 832 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 7/109 (6%) Query: 353 MADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 M D D+ ++V G + SA + L+ A+VS L P+ +D+ + GE+ L G++ PV Sbjct: 691 MKDSDIHIHVPSGAIPKDGPSAGVTLVTALVSLLTGIPVREDVAMTGEITLRGQVLPVGG 750 Query: 412 GQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 +E+ A + G + I+P N +P E M+ V+ + D L Sbjct: 751 IKEKALAAQRAGIKVFILPKRNEMDLDELPPTLRENMRFVLVETIDDVL 799 >UniRef50_Q4UJI0 ATP-dependent protease La, bacterial type n=1 Tax=Rickettsia felis RepID=Q4UJI0_RICFE Length = 815 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + + A+ S L ++ + QD+ + GE+ L G + + +E+++ A + G + I+P Sbjct: 690 SAGITIYTALYSLLSNKKIRQDIAMTGEITLKGRVLEIGGLKEKLTAAVREGIKEVIIPK 749 Query: 432 AN------VPKKAPEGMQIFGVKKLSDALS-VFD 458 N +P++ + + I V S+ L VFD Sbjct: 750 DNERDLAEIPEEIKQALIIHTVSNTSEILRIVFD 783 >UniRef50_UPI00006CB33C hypothetical protein TTHERM_00459230 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB33C Length = 356 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 36/218 (16%) Query: 41 ASPMVAR--NERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAI 98 AS ++AR N RL G +Q+ S I R STG K D +L GG+ S Sbjct: 78 ASEILARSENSRLFSSEFVLGTTVLQRRSQIR-----RISTGSKALDDILNGGIESQSIT 132 Query: 99 LIGGNPGAGKSTLLLQTLCKLAQQM-------KTLYVTGEESL--QQVAMRAHRLGLPTD 149 G +GK T + T C LAQ K LY+ E + +++ A G+ + Sbjct: 133 EFYGEYRSGK-TQIAHTACVLAQSQDHCQSPGKVLYIDTEGTFRPERICQIASHYGMEGE 191 Query: 150 ------------NLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQV 197 N++ + I+ L+ EE L+V+DSI D S G +++ Sbjct: 192 YALSNIIYGRAYNVDQQNTLLIKGAQLMVEENCFALLVVDSIMANFRCDF-SGRGDLSER 250 Query: 198 RET----AAYLTRFAKTRGVAIVMVGHVTKD--GSLAG 229 ++ + L R A +A+++ V D G++ G Sbjct: 251 QQALGKFMSRLQRMAAEFNIAVIITNQVMADPSGAMTG 288 >UniRef50_A8ASU7 Gp113 n=2 Tax=Listeria phage A511 RepID=A8ASU7_BPA51 Length = 487 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL-QTLCKLAQQMKTLYVTGEESL 134 +FSTGF + D + GG+ G L+ G GK+ + Q +AQ + LYV EE L Sbjct: 178 KFSTGFTDLDVIAEGGIGRGELGLVIAPTGGGKTMWAVNQAKNYVAQGLNVLYVVLEERL 237 Query: 135 QQVAMRAHR--LGLPTDNL---NMLSETSIEQICLIAE 167 +++ +R + +G+P L N L E + +++ I + Sbjct: 238 ERMILRFEQNMMGIPKSRLMPDNELDEEAFDKLQTIYD 275 >UniRef50_A9B3R2 ATP-dependent protease La n=8 Tax=Bacteria RepID=A9B3R2_HERA2 Length = 815 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 357 DVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+ ++V GGV SA + L +++S+L RPL +D+ + GE+ L G + P+ +++ Sbjct: 672 DIHIHVPEGGVPKDGPSAGITLACSVISALTHRPLRRDVAMTGEITLRGRVLPIGGLRDK 731 Query: 416 ISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 I A + G ++P N VP + + V+ + + L + Sbjct: 732 ILGAYRAGITTMLIPKKNLRDLEEVPNNVRRQITVVAVEHMDEVLPI 778 >UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=Chlamydomonas reinhardtii RepID=A8I670_CHLRE Length = 415 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 8/142 (5%) Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 G + +LSD + F +G D LGGG G I + G +GK+TL + + Sbjct: 78 GDGSIMRLSDSVTANIETFPSGSLTLDAALGGGYPRGRIIEVYGPEASGKTTLAMHACAE 137 Query: 119 LAQQMKTL-YVTGEESLQQVAMRAHRLGLPTDNL----NMLSETSIEQICLIAEEEQPKL 173 + + T+ Y+ E + + A RLG+ +N M E ++E + + L Sbjct: 138 IQRLGGTVAYIDVEHAFDRTY--AERLGINLNNFWYAQPMTGEEALEVMDELCRSNVCDL 195 Query: 174 MVIDSIQVM-HMADVQSSPGSV 194 +VIDS+ + A+++ GSV Sbjct: 196 VVIDSVAALVPRAELEGDIGSV 217 >UniRef50_C5A2Z8 RecA family AAA ATPase n=7 Tax=Thermococcaceae RepID=C5A2Z8_THEGJ Length = 236 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVT 129 R STG D ++ GG++PG LI G PG+GK+T+ + L + A++ K YV+ Sbjct: 7 RISTGIPGLDELIEGGLIPGKVYLITGPPGSGKTTMGMHFLIEGARKNEKVAYVS 61 >UniRef50_B1AIY7 ATP-dependent protease La n=15 Tax=Ureaplasma RepID=B1AIY7_UREP2 Length = 791 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%) Query: 357 DVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+ V+V GG+ SA +A+ A++SSL RP+ L + GE+ L G + + +E+ Sbjct: 680 DIHVHVPSGGIPKDGPSAGIAITTAIISSLSQRPVRTTLSMTGEIMLRGNVGIIGGVKEK 739 Query: 416 ISEAAKHGFRRAIVPA------ANVPKKAPEGMQIFGVKKLSDALSV 456 + A + G R I+P +VPK + ++I VK + ++ Sbjct: 740 VISAYRAGVREIILPIDDERYLEDVPKYILDDIKIHLVKHYDEVYNI 786 >UniRef50_A7VFF6 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VFF6_9CLOT Length = 333 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 48/237 (20%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQ------QMKT------LYVTGEESLQQVAMRAH 142 G +I G+PG GK+TL+L +L++ MK +Y T E+ L Sbjct: 39 GKLTIIQGDPGDGKTTLILNIAARLSKGEGLDNDMKVTEPVNIIYQTAEDGLADTV--KP 96 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ---------VMHMADVQSSPGS 193 RL L+E E+I +I E E+ M+ + ++ V+ + +Q+ G Sbjct: 97 RLE--------LAEAVCERIMVIDETEKSLSMIDERLETAIKRTGARVLILDPIQAYLGG 148 Query: 194 VA------QVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC-----SVL 242 + R+ L+ A+ AI+++GH+ K G ID SVL Sbjct: 149 TMDMNRANEARDMTKRLSLLAEKYKCAILLIGHMNKAGGNKAAYRGMGSIDFFAVARSVL 208 Query: 243 LDG--DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 L G + ++ R + KN A F +TE G + + + DEV G Sbjct: 209 LVGRIEGETDLRAVVQIKNNLAAFGHSKAFRLTETGFEWIGD----YEITADEVLGG 261 >UniRef50_Q5A2U1 Putative uncharacterized protein RAD57 n=1 Tax=Candida albicans RepID=Q5A2U1_CANAL Length = 511 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 32/166 (19%) Query: 38 RLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSA 97 RL PM N+ Y +V S SL + STG DR LGGG+ G Sbjct: 49 RLVDRPMKEINDY---YRNLKKDLQVDPTSVNSLLDSEFISTGLPSIDRELGGGIPIGEV 105 Query: 98 ILIGGNPGAGKSTLLLQTLCKLAQQM---KTLYVTGEESLQQVAMRAHRLGLPTDNLNML 154 I G G GKS L Q L ++ K +Y++ E L+ ++ +G + N+ Sbjct: 106 TEIFGASGCGKSHFLFQLLSNCGKEFSTSKNIYISTESFLETKRLKDF-IGRNSSNI--- 161 Query: 155 SETSIEQICLI---------------------AEEEQPKLMVIDSI 179 +T +++I I +++ + KL+V+DSI Sbjct: 162 -DTDLDRISYIYCQDLESQDHILFTQLPLKLDSDKGKTKLLVLDSI 206 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organ... 674 0.0 UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicut... 618 e-175 UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteri... 606 e-172 UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteri... 603 e-171 UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=... 600 e-170 UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae ... 589 e-167 UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobact... 588 e-166 UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=... 587 e-166 UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae ... 584 e-165 UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridi... 581 e-164 UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termi... 578 e-163 UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B... 574 e-162 UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria ... 573 e-162 UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma lingua... 569 e-161 UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteri... 567 e-160 UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocace... 566 e-160 UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas w... 564 e-159 UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacter... 563 e-159 UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=... 563 e-159 UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteri... 562 e-159 UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acet... 562 e-158 UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus ... 561 e-158 UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri... 561 e-158 UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquifica... 561 e-158 UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius t... 559 e-158 UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira mul... 558 e-157 UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bac... 555 e-156 UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepI... 551 e-155 UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae... 551 e-155 UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobact... 550 e-155 UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=... 546 e-154 UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succ... 545 e-153 UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacte... 544 e-153 UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio ac... 541 e-152 UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloac... 540 e-152 UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus Rep... 536 e-151 UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vagi... 536 e-151 UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain pr... 536 e-151 UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisu... 533 e-150 UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriacea... 533 e-150 UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickett... 532 e-150 UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis ste... 532 e-150 UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus ... 532 e-149 UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae... 532 e-149 UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickett... 531 e-149 UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteri... 531 e-149 UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C... 529 e-148 UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum f... 528 e-148 UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter ked... 527 e-148 UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium ... 527 e-148 UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A... 525 e-148 UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium m... 525 e-147 UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae Re... 523 e-147 UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum s... 519 e-146 UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID... 518 e-145 UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales Re... 517 e-145 UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candi... 516 e-145 UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilon... 514 e-144 UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales... 512 e-144 UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales Re... 510 e-143 UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria R... 510 e-143 UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobac... 507 e-142 UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thal... 507 e-142 UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID... 505 e-141 UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1... 504 e-141 UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chrom... 502 e-141 UniRef50_Q9FK38 DNA repair protein-like n=8 Tax=rosids RepID=Q9F... 502 e-140 UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio Re... 500 e-140 UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponem... 499 e-139 UniRef50_C7I4G6 DNA repair protein radA n=3 Tax=Bacteria RepID=C... 497 e-139 UniRef50_B7GN99 DNA repair protein radA n=20 Tax=Bifidobacteriac... 497 e-139 UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibriona... 497 e-139 UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea may... 495 e-138 UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID... 495 e-138 UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibri... 493 e-138 UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincen... 492 e-138 UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales ... 489 e-136 UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae R... 488 e-136 UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales... 488 e-136 UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp... 484 e-135 UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms Rep... 483 e-135 UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae R... 483 e-135 UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinob... 479 e-134 UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A... 477 e-133 UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID... 476 e-133 UniRef50_B8I5Q5 AAA ATPase n=13 Tax=Clostridiales RepID=B8I5Q5_C... 476 e-132 UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium ... 475 e-132 UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1... 474 e-132 UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacte... 474 e-132 UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibac... 470 e-131 UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C... 465 e-129 UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B... 461 e-128 UniRef50_D1Y454 DNA repair protein radA n=1 Tax=Pyramidobacter p... 461 e-128 UniRef50_C7RFC7 DNA repair protein radA n=1 Tax=Anaerococcus pre... 458 e-127 UniRef50_C5CHP4 DNA repair protein radA n=1 Tax=Kosmotoga oleari... 454 e-126 UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga letti... 454 e-126 UniRef50_A4SAK3 Predicted protein (Fragment) n=4 Tax=cellular or... 453 e-126 UniRef50_B7FVI7 Predicted protein (Fragment) n=2 Tax=Bacillariop... 438 e-121 UniRef50_C1N8F6 DNA repair protein-related n=1 Tax=Micromonas pu... 433 e-120 UniRef50_B5W8S1 DNA repair protein radA n=2 Tax=Arthrospira RepI... 415 e-114 UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltrans... 413 e-114 UniRef50_C9M763 DNA repair protein RadA n=1 Tax=Jonquetella anth... 392 e-107 UniRef50_B5Y8V7 DNA repair protein n=1 Tax=Coprothermobacter pro... 384 e-105 UniRef50_D0N9B5 DNA repair protein radA n=1 Tax=Phytophthora inf... 335 2e-90 UniRef50_UPI0000382A4B COG1066: Predicted ATP-dependent serine p... 289 1e-76 UniRef50_B5AXB1 Protease (Fragment) n=171 Tax=cellular organisms... 280 5e-74 UniRef50_C1TS01 Putative uncharacterized protein (Fragment) n=1 ... 254 4e-66 UniRef50_C1TLA8 Putative uncharacterized protein n=1 Tax=Dethios... 240 1e-61 UniRef50_C6NU33 DNA repair protein RadA (Fragment) n=1 Tax=Acidi... 203 1e-50 UniRef50_UPI00019062BC DNA repair protein RadA n=1 Tax=Rhizobium... 190 9e-47 UniRef50_A8I6M1 Predicted protein n=1 Tax=Chlamydomonas reinhard... 188 3e-46 UniRef50_C0DC21 Putative uncharacterized protein (Fragment) n=1 ... 187 1e-45 UniRef50_C0B7I7 Putative uncharacterized protein n=1 Tax=Coproco... 174 6e-42 UniRef50_C6Q2E8 Peptidase S16 lon domain protein (Fragment) n=1 ... 151 6e-35 UniRef50_UPI0001902794 DNA repair protein RadA n=1 Tax=Rhizobium... 145 3e-33 UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium... 140 1e-31 UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Ta... 136 1e-30 UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=C... 133 2e-29 UniRef50_C8W5T4 Sigma 54 interacting domain protein n=10 Tax=Fir... 133 2e-29 UniRef50_A6TM65 Sporulation protease LonB n=3 Tax=Clostridiaceae... 133 2e-29 UniRef50_P42425 ATP-dependent protease La homolog n=146 Tax=Firm... 130 9e-29 UniRef50_B0TA55 ATP-dependent lon protease n=22 Tax=Clostridia R... 129 2e-28 UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=C... 128 5e-28 UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selen... 127 7e-28 UniRef50_A4VNI0 Circadian oscillation regulator n=49 Tax=Bacteri... 127 8e-28 UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC 126 2e-27 UniRef50_Q5ZWH0 DNA integration/recombination/inversion protein ... 125 3e-27 UniRef50_A1WZ80 Circadian clock protein KaiC n=1 Tax=Halorhodosp... 125 4e-27 UniRef50_Q742I0 Putative uncharacterized protein n=1 Tax=Mycobac... 124 7e-27 UniRef50_C0D1P1 Putative uncharacterized protein n=1 Tax=Clostri... 124 9e-27 UniRef50_Q0SPS3 ATP-dependent protease n=25 Tax=Clostridia RepID... 124 1e-26 UniRef50_Q1QT32 Putative circadian clock protein, KaiC n=1 Tax=C... 123 1e-26 UniRef50_C7NVJ6 Putative circadian clock protein, KaiC n=1 Tax=H... 123 1e-26 UniRef50_C9KM28 ATP-dependent protease, Lon family n=3 Tax=Clost... 123 1e-26 UniRef50_A9W785 Non-specific serine/threonine protein kinase n=1... 123 2e-26 UniRef50_D2RXS1 Sigma 54 interacting domain protein n=7 Tax=Eury... 122 2e-26 UniRef50_O28184 DNA repair and recombination protein radB n=3 Ta... 122 2e-26 UniRef50_Q9UYC6 Pab lon intein n=1 Tax=Pyrococcus abyssi RepID=L... 122 3e-26 UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepI... 121 4e-26 UniRef50_Q58812 Putative protease La homolog n=5 Tax=Methanocald... 120 1e-25 UniRef50_D2EGM1 Putative circadian clock protein, KaiC n=1 Tax=C... 119 2e-25 UniRef50_Q0AB05 Putative circadian clock protein, KaiC n=1 Tax=A... 119 2e-25 UniRef50_C4V1V9 ATP-dependent protease n=2 Tax=Selenomonas RepID... 119 3e-25 UniRef50_A9WC99 Non-specific serine/threonine protein kinase n=9... 118 6e-25 UniRef50_P73860 KaiC-like protein 1 n=35 Tax=cellular organisms ... 117 1e-24 UniRef50_O26878 Putative protease La homolog type 1 n=30 Tax=Arc... 116 3e-24 UniRef50_D2RH30 Putative circadian clock protein, KaiC n=1 Tax=A... 115 3e-24 UniRef50_C5A1G9 RecA family AAA ATPase n=3 Tax=Thermococcus RepI... 115 4e-24 UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanoco... 115 4e-24 UniRef50_A6UPI7 Peptidase S16, Lon-like protease n=1 Tax=Methano... 114 6e-24 UniRef50_B5ISK3 KaiC domain protein n=5 Tax=Thermococcaceae RepI... 114 6e-24 UniRef50_A5UNJ6 ATP-dependent protease La, LonB n=2 Tax=Methanob... 114 8e-24 UniRef50_D2RVL7 Putative circadian clock protein, KaiC n=1 Tax=H... 113 1e-23 UniRef50_Q3ADP9 Conserved domain protein n=3 Tax=Clostridia RepI... 113 1e-23 UniRef50_A6UWQ4 Peptidase S16, Lon-like protease n=6 Tax=Methano... 111 4e-23 UniRef50_Q74NJ8 NEQ349 n=1 Tax=Nanoarchaeum equitans RepID=Q74NJ... 111 5e-23 UniRef50_B6YWB4 ATPase n=3 Tax=Thermococcus RepID=B6YWB4_THEON 111 5e-23 UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Ta... 110 1e-22 UniRef50_Q48N05 Circadian oscillation regulator KaiC homolog n=6... 110 1e-22 UniRef50_B2JVR0 Non-specific serine/threonine protein kinase n=6... 109 3e-22 UniRef50_Q9XW87 Protein Y75B8A.4, partially confirmed by transcr... 106 2e-21 UniRef50_B5YK35 ATP-dependent protease La 1 n=1 Tax=Thermodesulf... 105 4e-21 UniRef50_Q2IEE4 Putative circadian clock protein, KaiC n=1 Tax=A... 103 1e-20 UniRef50_Q3IN66 Probable KaiC-like transcriptional regulator 1 n... 103 2e-20 UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q... 101 8e-20 UniRef50_D0LT56 Putative circadian clock protein, KaiC n=1 Tax=H... 100 1e-19 UniRef50_A2BKH9 Putative RecA ATPase n=1 Tax=Hyperthermus butyli... 99 2e-19 UniRef50_Q0W872 Predicted RecA-family ATPase n=2 Tax=Euryarchaeo... 99 2e-19 UniRef50_Q08YR0 Putative uncharacterized protein n=1 Tax=Stigmat... 99 4e-19 UniRef50_C7GBX2 Mg chelatase-like protein n=3 Tax=Clostridiales ... 99 4e-19 UniRef50_Q2SRX5 ATP-dependent protease La n=4 Tax=Mollicutes Rep... 98 5e-19 UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprote... 98 7e-19 UniRef50_C1VAG2 RecA-superfamily ATPase possibly involved in sig... 96 2e-18 UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y... 96 3e-18 UniRef50_C6A5H8 ATPase, RecA superfamily n=4 Tax=Thermococcus Re... 96 3e-18 Sequences not found previously or not previously below threshold: UniRef50_O58221 Pho lon intein n=9 Tax=Archaea RepID=LONH_PYRHO 120 9e-26 UniRef50_D1Z1M4 Putative uncharacterized protein n=1 Tax=Methano... 112 3e-23 UniRef50_UPI0001C41E3C ATP-dependent protease S16 family n=1 Tax... 111 4e-23 UniRef50_D2RH64 Putative circadian clock protein, KaiC n=1 Tax=A... 111 8e-23 UniRef50_UPI00016C4483 putative circadian clock protein, KaiC n=... 109 2e-22 UniRef50_Q6L8L1 Circadian clock protein kinase kaiC n=127 Tax=Ba... 109 2e-22 UniRef50_C8SDE7 Putative circadian clock protein, KaiC n=1 Tax=M... 109 3e-22 UniRef50_B5I9Z9 KaiC domain protein n=3 Tax=Aciduliprofundum boo... 109 3e-22 UniRef50_B9XHU6 Putative circadian clock protein, KaiC n=1 Tax=b... 108 4e-22 UniRef50_C7DGV1 Peptidase S16, Lon-like protease n=1 Tax=Candida... 107 7e-22 UniRef50_B4SN90 Non-specific serine/threonine protein kinase n=2... 107 9e-22 UniRef50_D2EGD6 Peptidase S16, Lon protease n=2 Tax=Euryarchaeot... 107 1e-21 UniRef50_C1VBQ7 RecA-superfamily ATPase possibly involved in sig... 106 1e-21 UniRef50_A5D488 RecA-superfamily ATPase n=1 Tax=Pelotomaculum th... 106 3e-21 UniRef50_A2BJC1 RecA-like ATPase (KaiC-like) n=1 Tax=Hyperthermu... 105 4e-21 UniRef50_D2LZH6 Putative circadian clock protein, KaiC n=1 Tax=B... 103 1e-20 UniRef50_B1ZPK0 Putative circadian clock protein, KaiC n=3 Tax=B... 103 2e-20 UniRef50_UPI0001C334A3 circadian clock protein KaiC n=1 Tax=cyan... 103 2e-20 UniRef50_D2RQC1 Putative circadian clock protein, KaiC n=1 Tax=H... 103 2e-20 UniRef50_Q0W7M8 Putative uncharacterized protein n=1 Tax=uncultu... 101 4e-20 UniRef50_O27166 Conserved protein n=1 Tax=Methanothermobacter th... 101 4e-20 UniRef50_C1AB48 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 101 4e-20 UniRef50_C6HYB7 ATP-dependent protease La n=1 Tax=Leptospirillum... 101 5e-20 UniRef50_B6YV41 ATPase n=7 Tax=Thermococcaceae RepID=B6YV41_THEON 100 1e-19 UniRef50_A9B3R2 ATP-dependent protease La n=8 Tax=Bacteria RepID... 100 1e-19 UniRef50_Q1IWD7 ATP-dependent protease La n=9 Tax=Deinococci Rep... 99 2e-19 UniRef50_B4UAX6 ATP-dependent protease La n=18 Tax=Bacteria RepI... 99 2e-19 UniRef50_B8GX12 ATP-dependent protease La n=79 Tax=cellular orga... 99 2e-19 UniRef50_D2RE70 Putative circadian clock protein, KaiC n=1 Tax=A... 99 2e-19 UniRef50_C4FZN4 ATP-dependent protease La n=1 Tax=Abiotrophia de... 100 2e-19 UniRef50_B1C8C1 ATP-dependent protease La n=1 Tax=Anaerofustis s... 100 2e-19 UniRef50_D2M297 Putative circadian clock protein, KaiC n=1 Tax=B... 100 2e-19 UniRef50_Q65GJ6 ATP-dependent protease La n=16 Tax=Bacteria RepI... 99 3e-19 UniRef50_P43864 ATP-dependent protease La n=107 Tax=Bacteria Rep... 99 3e-19 UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Ta... 99 3e-19 UniRef50_A6XWS5 ATP-dependent protease La n=4 Tax=Bacteria RepID... 99 3e-19 UniRef50_C3XNB5 ATP-dependent protease La n=4 Tax=Campylobactera... 99 3e-19 UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter m... 99 4e-19 UniRef50_C9XRQ1 ATP-dependent protease La n=12 Tax=Clostridiales... 99 4e-19 UniRef50_C5A2Z8 RecA family AAA ATPase n=7 Tax=Thermococcaceae R... 98 5e-19 UniRef50_UPI00016C08DB Endopeptidase La n=1 Tax=Epulopiscium sp.... 98 5e-19 UniRef50_B3PN08 Heat shock ATP-dependent protease n=2 Tax=Mycopl... 98 7e-19 UniRef50_Q1CWG1 Putative uncharacterized protein n=2 Tax=Cystoba... 98 7e-19 UniRef50_C7NAE3 Endopeptidase La n=1 Tax=Leptotrichia buccalis C... 98 7e-19 UniRef50_A8SNF0 ATP-dependent protease La n=3 Tax=Clostridiales ... 98 7e-19 UniRef50_C5NYU5 ATP-dependent protease La n=1 Tax=Gemella haemol... 98 8e-19 UniRef50_P0A9M1 ATP-dependent protease La n=430 Tax=cellular org... 98 8e-19 UniRef50_B5CKS9 ATP-dependent protease La n=1 Tax=Ruminococcus l... 98 8e-19 UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Ta... 98 9e-19 UniRef50_Q2YPX3 ATP-dependent protease La n=377 Tax=Bacteria Rep... 98 9e-19 UniRef50_C4ZGF6 ATP-dependent protease La n=5 Tax=Bacteria RepID... 97 1e-18 UniRef50_Q2NEP8 Putative ATP-dependent protease La n=1 Tax=Metha... 97 1e-18 UniRef50_A7HK39 ATP-dependent protease La n=11 Tax=Thermotogacea... 97 1e-18 UniRef50_A9KH99 ATP-dependent protease La n=1 Tax=Clostridium ph... 97 2e-18 UniRef50_Q6MH16 ATP-dependent protease La n=1 Tax=Bdellovibrio b... 96 2e-18 UniRef50_Q5V5J9 RecA/helicase-like n=1 Tax=Haloarcula marismortu... 96 2e-18 UniRef50_B0VJ87 ATP-dependent protease La n=1 Tax=Candidatus Clo... 96 3e-18 UniRef50_A2BL46 Predicted ATPase n=17 Tax=Archaea RepID=A2BL46_H... 96 3e-18 UniRef50_C4WXJ0 ACYPI007384 protein n=2 Tax=Acyrthosiphon pisum ... 96 3e-18 UniRef50_A0BE69 Lon protease homolog n=3 Tax=Paramecium tetraure... 95 4e-18 UniRef50_C0R248 ATP-dependent protease La n=3 Tax=Brachyspira Re... 95 5e-18 UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borre... 95 6e-18 UniRef50_Q469F5 ATP-dependent protease La n=11 Tax=cellular orga... 95 7e-18 UniRef50_C4PZ87 Lon protease homolog n=1 Tax=Schistosoma mansoni... 95 7e-18 UniRef50_C6D886 ATP-dependent protease La n=5 Tax=Bacteria RepID... 95 7e-18 UniRef50_B9LMB1 ATP-dependent protease La n=3 Tax=Chloroflexi (c... 95 8e-18 UniRef50_O66605 ATP-dependent protease La n=4 Tax=Aquificales Re... 94 8e-18 UniRef50_B1AIY7 ATP-dependent protease La n=15 Tax=Ureaplasma Re... 94 9e-18 UniRef50_A8STA7 ATP-dependent protease La n=1 Tax=Coprococcus eu... 94 1e-17 UniRef50_Q4UJI0 ATP-dependent protease La, bacterial type n=1 Ta... 94 1e-17 UniRef50_Q9ZD92 ATP-dependent protease La n=15 Tax=Rickettsieae ... 94 1e-17 UniRef50_C1AAM1 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 94 1e-17 UniRef50_D1CFP7 ATP-dependent protease La n=4 Tax=Bacteria RepID... 94 1e-17 UniRef50_C1AAY4 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 94 1e-17 UniRef50_B6AMK4 ATP-dependent protease La n=2 Tax=Leptospirillum... 94 1e-17 >UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organisms RepID=RADA_SALTY Length = 460 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 450/460 (97%), Positives = 456/460 (99%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP VARNERLSGYAGSAGV Sbjct: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGV 60 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA Sbjct: 61 SKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +QMKTLYVTGEESLQQVAMRAHRLGLPT NLNMLSETSIEQICLIAEEEQPKLMVIDSIQ Sbjct: 121 EQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 VMHMAD+QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS Sbjct: 181 VMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV Sbjct: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM+DQDVFV Sbjct: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFV 360 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA Sbjct: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 KHGFRRAIVPAANVPKK PEGM +FGVKKL+DALSVFDDL Sbjct: 421 KHGFRRAIVPAANVPKKPPEGMLVFGVKKLADALSVFDDL 460 >UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicutes RepID=RADA_BACSU Length = 458 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 212/456 (46%), Positives = 302/456 (66%), Gaps = 6/456 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C CG + P+W G+C C AWNT+ E + +P N R + V Sbjct: 1 MAK-TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPA---NRRAAFSHSVQTV 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++ I E PR T EF+RVLGGGVV GS +LIGG+PG GKSTLLLQ +L+ Sbjct: 57 QKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLS 116 Query: 121 QQMK-TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 LY++GEES++Q +RA RLG+ +L++LSET +E I +E P +V+DSI Sbjct: 117 GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSI 176 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ +D+ S+PGSV+QVRE A L + AKT+G+ I +VGHVTK+GS+AGP++LEH +D Sbjct: 177 QTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ FR LR+ KNRFG+ NE+G+F M E+GL EV NPS IFL ++GSS Sbjct: 237 VLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSS 296 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + EGTRP+LVEIQAL+ + NPRR+A G++ NR+++L+AVL + GL + +QD + Sbjct: 297 ITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAY 356 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 + V GGVK+ E + DLA+++++ SS RD P GEVGL GE+R V ++R+ EA Sbjct: 357 LKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEA 416 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDAL 454 AK GF+R I+PAAN+ P+G+++ GV +++AL Sbjct: 417 AKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEAL 452 >UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteria RepID=RADA_BACHD Length = 457 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 209/458 (45%), Positives = 305/458 (66%), Gaps = 7/458 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG + +W G+C C +WN++ E +R+ SG AG+ Sbjct: 1 MAKK-KTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSG----AGI 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 AK Q ++ + E+ PR T KE +RVLGGG+VPGS +L+GG+PG GKSTLLLQ +LA Sbjct: 56 AKPQPITKVEREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLA 115 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + + LY++GEES++Q +R+ RLG+ +D+L +L+ET +E+I E P L++IDSI Sbjct: 116 DLKQRVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIGEVDPTLVIIDSI 175 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ ++ S+PGSVAQVRE A R AKT GVAI +VGHVTK G++AGPK+LEH +D Sbjct: 176 QTVYQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDS 235 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ +R LR+ KNRFG+ NE+G+F M E GL EV+NPS IFL +GS+ Sbjct: 236 VLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGST 295 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+ EGTRP+LVE+QAL+ + NPRR+A G++ NR+++L+AVL + G+ + +QD + Sbjct: 296 VVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAY 355 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VNV GGV++ E + DL + +++ SS R++ VV GE+GL GE+R V +R++EA Sbjct: 356 VNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTGEVRRVSRIDQRVNEA 415 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALSV 456 AK GF+R I+P N+ P +++ GV + DAL V Sbjct: 416 AKLGFKRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEV 453 >UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteria RepID=RADA_LISMO Length = 457 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 197/458 (43%), Positives = 292/458 (63%), Gaps = 9/458 (1%) Query: 1 MAKAPKRA-FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MAKA + FVC CG + +W G+C C+ WN + E + S + + Sbjct: 1 MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKS------RSAFNHTGE 54 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 +K ++ I+ E R T E +RVLGGGVVPGS +L+GG+PG GKSTLLLQ +L Sbjct: 55 PSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQL 114 Query: 120 A-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 K LY++GEES++Q +RA RL + DNL + +ET++E + + +P +VIDS Sbjct: 115 TLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFVKPDFVVIDS 174 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ +DV S+ GSV+QVRE A L R AK + +AI +VGHVTK+G++AGP++LEH +D Sbjct: 175 IQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVD 234 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +G+ +R LR+ KNRFG+ NE+G+F M + GL EV+NPS +FL E SGS Sbjct: 235 TVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V+ EGTRP+LVEIQALV +M N +R+A G++ N++++++AVL + GL + +QD Sbjct: 295 TVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDA 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++ GGVK+ E + DLA+ +++ SS RD+P GE+GL GEIR V ++R+ E Sbjct: 355 YLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQE 414 Query: 419 AAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 AAK GF+R +P N K P+ +Q+ GV+ + +AL Sbjct: 415 AAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALK 452 >UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=B1YGS3_EXIS2 Length = 461 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 215/453 (47%), Positives = 301/453 (66%), Gaps = 5/453 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K FVC CG + P+W G+CS C WNT+ E + + + K Sbjct: 6 KIKTKFVCQSCGTESPKWMGRCSGCGEWNTMVEEVVEEKKA---RRGSAFVHTTTKQLKP 62 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 ++LS+I +E R TG EFDRVLGGG+VPGS +L+GG+PG GKST+LLQT +LA + Sbjct: 63 ERLSNILSQEESRVFTGSGEFDRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSARLAARG 122 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 K LY++GEESL+Q +RA RLGLPT +L +LSET + I + +EE P ++IDSIQ + Sbjct: 123 EKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIERVVDEENPAFLIIDSIQTV 182 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ ++QS+PGSV QVRE A L + AK+RG+AI +VGHVTK GS+AGP++LEH +D + Sbjct: 183 YIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVDAVLY 242 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +G+ FR LR+ KNRFG+ NE+G+F M E GL EV NPS IFL SGS+++ Sbjct: 243 FEGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERTSGVSGSTIVA 302 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTR +LVE+QAL+ + NPRR+A G++QN++A+L+AVL + GL + QD ++ Sbjct: 303 SMEGTRTVLVELQALISPTSFGNPRRMATGIDQNKVALLMAVLEKRSGLLLQTQDAYLKA 362 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGVK+ E + DLA+ +A+ SS RD+P VV GEVGL GE+R V ++R++EAAK Sbjct: 363 AGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLTGEVRRVSRIEQRVAEAAKL 422 Query: 423 GFRRAIVPAANVPK-KAPEGMQIFGVKKLSDAL 454 GF RAI+P N+ P G+ + GV+ + +AL Sbjct: 423 GFTRAIIPKNNLGGWTYPPGITVIGVESVDEAL 455 >UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae RepID=D2RJM6_ACIFE Length = 457 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 7/457 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + +VC CG P+W G+C C W+T+ E A +P R Y Sbjct: 1 MAK-TQTHYVCQNCGYSTPKWLGKCPECGRWDTLVEETAAPAPSRQR----PSYLAVTEA 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT-LCKL 119 + L + ++ R +TG EFDRVLGGG+VPGS IL+GG PG GKST+ L + Sbjct: 56 PTPKTLKQVDRVKVQRMTTGIHEFDRVLGGGIVPGSLILLGGAPGIGKSTITLDVSMKAA 115 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 A+ + LYV+GEES Q AMRA RLG TD L +++ T + I + A + +P+L+VIDSI Sbjct: 116 ARGARVLYVSGEESEAQTAMRAERLGQATDALQIMTATELGTILVQARQVKPRLLVIDSI 175 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q M+ +++S+ GSV QVRE A L FAK G+AI+++GHVTK+G++AGP++LEH +D Sbjct: 176 QTMYNQELESAAGSVGQVRECTAKLLTFAKETGIAIIIIGHVTKEGNIAGPRLLEHMVDV 235 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD +R LR+ KNRFG+ +E G+F+M E+GLREV+NPS +FL +E SGS Sbjct: 236 VLQFEGDRSYTYRVLRALKNRFGSTSECGIFSMEEEGLREVANPSGLFLEAREEAVSGSV 295 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + EG RP+L EIQALV H+ PRR VG++ NR+ +LLAVL + G+ DQD + Sbjct: 296 ITAAMEGNRPILTEIQALVSHTPFGLPRRTVVGVDFNRVNMLLAVLEKRCGMNFGDQDAY 355 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 V VGG+KV E +ADLA+L A+VSS R+RP+P ++ GEVGL GE+R V RI EA Sbjct: 356 VCAVGGMKVKEPAADLAILGALVSSYRNRPVPMGVLAMGEVGLTGELRRVGLTDRRIKEA 415 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 A+ GF+R IVP + P+ K P+G+ + + + +A++ Sbjct: 416 AQLGFKRFIVPKGSFPQGKEPKGVTVIQARTVEEAIA 452 >UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobacteria RepID=B0RY20_XANCB Length = 463 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 276/460 (60%), Positives = 346/460 (75%), Gaps = 6/460 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNE----RLSGYAG 56 MAKA K A+VC ECGA+Y +WQGQC+ C WNT++E+ L ++ + R SG+AG Sbjct: 1 MAKA-KTAYVCGECGAEYTKWQGQCTECGVWNTLSEIVLESATPAGKASPAASRRSGWAG 59 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 K+ L D+ E R STG EFDRVLGGG+V G+ +LIGG+PG GKSTLLLQ L Sbjct: 60 KTEAPKITALKDVQQSEQARVSTGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQAL 119 Query: 117 CKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 +A + LYVTGEESL QVA RA RL LP + LN L+ET IE I A +PKL+V Sbjct: 120 ASMASTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAETGIENILQHASVARPKLIVA 179 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DS+Q + + ++PGSV+QVRE+AA L R+AK G A+ +VGHVTK+G +AGP+VLEH Sbjct: 180 DSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHM 239 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +G++ SRFR LR+ KNRFGAVNELGVFAM E+GL+EVSNPSAIFLS G Sbjct: 240 VDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTHQP 299 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS VMV EGTRPL+VE+QALVD S ++NPRRVAVGLEQNRLA+LLAVLHRHGG+ + DQ Sbjct: 300 GSCVMVTREGTRPLMVEVQALVDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQ 359 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DVFVNVVGG++V ET+ADL +LLA++SSLRDRPL + + FGEVGL+GEIRPVP+G++R+ Sbjct: 360 DVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGEVGLSGEIRPVPNGEDRL 419 Query: 417 SEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 EAA HGF+RAIVP AN PK + +GM+I V++LS AL Sbjct: 420 KEAATHGFKRAIVPKANAPKASSIKGMEIVAVERLSQALE 459 >UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=B0K5E6_THEPX Length = 457 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 185/460 (40%), Positives = 286/460 (62%), Gaps = 11/460 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ FVC ECG + +W G+C C +WN+ E + +S + + Sbjct: 1 MAKST-TKFVCRECGFESSKWMGRCPNCDSWNSFEEEAIESSKN---------FRKTKDR 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +++ L D++ E R TG +EFDRVLGGG+V GS +LIGG+PG GKSTLLLQ ++ Sbjct: 51 SQIYLLEDVTFSEEERIRTGIEEFDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVAGNIS 110 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LYV+GEES+QQ+ +RA R+ + +L ET+IE+I +E +P ++IDSIQ Sbjct: 111 DSRKVLYVSGEESVQQIKLRADRILKEKQRIYLLCETNIEEIERKIDENKPDFVIIDSIQ 170 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ + ++ PGSV+Q+R+ L AK + ++I ++GHVTK+G++AGPKVLEH +D Sbjct: 171 TIYTEESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVTKEGAIAGPKVLEHMVDTV 230 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD FR LR+ KNRFGA +E+GVF M E GL E+SNPS LS + SG++V Sbjct: 231 LYFEGDRTQSFRILRAVKNRFGATHEIGVFDMEEDGLCEISNPSEFILSNKPKDVSGTAV 290 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + +GTRP+L+E+Q+L+ + PRR+A G + NR +LLAV+ + G+ ++ D +V Sbjct: 291 VSSIQGTRPILMEVQSLICKTTFGVPRRMATGFDYNRFILLLAVIEKRLGINLSQFDAYV 350 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NV GG+K+ E +ADL ++ + +S + P+P+D+ GEVGL GE+R V + +RI EA Sbjct: 351 NVAGGMKIQEPAADLGIIASSLSGYFNIPIPEDVCFIGEVGLTGEVRGVSNIDKRIGEAQ 410 Query: 421 KHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALSVFDD 459 K GF + +P + K +++ +K + D + + Sbjct: 411 KMGFSQVFIPEMKTKEIKKFGNIKVTKIKDIKDIMDFLRE 450 >UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae RepID=A8MLV2_ALKOO Length = 456 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 205/459 (44%), Positives = 288/459 (62%), Gaps = 9/459 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K FVC ECG + +W G+C C+ WNT+ E L + R+ + Sbjct: 1 MAK-IKSKFVCQECGYESVKWLGKCPGCNNWNTMEEEMLESKKDFKRSPTIV------SQ 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +K Q + ++ R+ T E +RVLGGG+V GS LI G PG GKSTL+LQ +A Sbjct: 54 SKPQPIKEVKSGAYERYDTQINELNRVLGGGLVKGSLTLITGEPGIGKSTLILQASSTIA 113 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + KTLYV+GEES +Q+ MR RL +D+L ++SET+++ I EE P ++IDSI Sbjct: 114 NRYGKTLYVSGEESEEQIKMRGERLNSLSDDLYIVSETNVDVIEKYIEEYAPVFIIIDSI 173 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + D+ S+PGSV+QV+E A L R K++ + + +V HVTK G LAGP+VLEH +D Sbjct: 174 QTLFKEDLSSAPGSVSQVKECANNLMRIGKSKNIPMFIVAHVTKQGELAGPRVLEHMVDT 233 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ FR LR+ KNRFG +E+GVF M E+GL EVSNPSA+FL G+ Sbjct: 234 VLHFEGERTQEFRILRALKNRFGTTSEIGVFEMREEGLVEVSNPSAMFLESLSTEAEGAI 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+V EGTRPLLVEIQALV + PRR AVG++ NRL +++AVL + GL + +QD++ Sbjct: 294 VVVTVEGTRPLLVEIQALVAPTNAGFPRRAAVGIDINRLNLIIAVLEKKIGLPLMNQDIY 353 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPL-PQDLVVFGEVGLAGEIRPVPSGQERISE 418 VNVVGG+K+ TSADL + +A+ SS+R P+ + +VV GE+ L GE+RP+ ++ + E Sbjct: 354 VNVVGGLKLEGTSADLGVAMAIYSSMRGIPIASRAMVVMGEISLTGELRPISHLEKMLKE 413 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A K GF R+++P N K M+ GV L DAL + Sbjct: 414 AEKMGFTRSVIPQKNKFKFDGIHMKCKGVDTLKDALEML 452 >UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34D2F Length = 485 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 205/485 (42%), Positives = 293/485 (60%), Gaps = 28/485 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLA-------------------- 40 MAKA AF C+ECG + +W GQC AC AWNT+ E +A Sbjct: 1 MAKARATAFFCSECGYESAKWMGQCPACRAWNTMVEEPVAFQTAKSAGKRGLGAAAGILG 60 Query: 41 ------ASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP 94 + A L+G A G + LS+I L R TGF E +RVLGGG+V Sbjct: 61 REGISASGKSPAGRSGLAGTASGLGAVCPKSLSEIELGREERTDTGFGELNRVLGGGIVK 120 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 GS +L+GG+PG GKSTLLLQ LA K LY++GEESL+Q+ +RA R+G +D+L Sbjct: 121 GSLVLVGGDPGIGKSTLLLQVCRNLAAGGQKVLYISGEESLKQIKIRASRIGEMSDSLCF 180 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 L ET++E I + P ++IDSIQ M++ ++ S+PGSV+QVRE L + AK G+ Sbjct: 181 LCETNLEMIQEVVRRTAPDTVIIDSIQTMYLEEITSAPGSVSQVRECTNVLMQIAKGLGI 240 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 + +VGHVTK+G +AGP+VLEH +D + +GD + +R LR KNRFG+ NE+GVF M Sbjct: 241 TVFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMR 300 Query: 274 EQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL 333 E+GL EV NPS L SG+ + EGTRPL++E+QALV S PRR A G Sbjct: 301 EEGLVEVKNPSEFMLEGRPAGASGAVAACLVEGTRPLMLEVQALVTRSNFGMPRRTAAGT 360 Query: 334 EQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD 393 + NR+ +L+AVL + + D +VN+ GG+K+ E + DLA+++A++SS +DR + + Sbjct: 361 DYNRVNLLMAVLEKRCRYDLGQMDAYVNIAGGLKMNEPALDLAIVMALISSYKDRAVDEK 420 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSD 452 VVFGEVGL+GE+R V ++R++EA K GF I+P + K K +++ GV + + Sbjct: 421 TVVFGEVGLSGEVRSVSMAEQRVNEAVKLGFEACILPRICLEKMKRRSDIRLIGVSSVKE 480 Query: 453 ALSVF 457 A+++ Sbjct: 481 AVAIL 485 >UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZI7_UNCTG Length = 455 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 202/456 (44%), Positives = 292/456 (64%), Gaps = 5/456 (1%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK 62 K K F+C CG + +W G+C +C AWN+ E + + R + ++ Sbjct: 2 KKQKTRFLCQHCGYESVQWLGKCPSCGAWNSFAEEKFSLPVRTGSLSR----QLTGFSSE 57 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 V KL DIS+++ R+ T KEFD ++GGG+VPGS IL+GG PG GKSTL+L L+ + Sbjct: 58 VLKLKDISVKDFSRYQTAIKEFDNMIGGGIVPGSLILLGGAPGIGKSTLMLHISDSLSDR 117 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 LY++GEESL QV RA RL + DN+ + SET+++ I + PK +VIDSIQ Sbjct: 118 GTVLYISGEESLSQVKARAERLKVKKDNIFLASETNLKNIIDAVNKIDPKFLVIDSIQTT 177 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + D+ S+PG+V QVRETAA L R AK++ +A+ ++GHVTK+G LAGP+VLEH +D + Sbjct: 178 YHPDLSSAPGTVGQVRETAAELLRVAKSKSIAVFLLGHVTKEGDLAGPRVLEHIVDTVLY 237 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 + + +R LR++KNRFG +E+G+F M GL EVSNPS IFL +G++V V Sbjct: 238 FENERRQTYRILRAYKNRFGPTSEIGIFEMDSSGLSEVSNPSLIFLGERVAEAAGNTVTV 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTRP+L+E+QAL + PRR+ G + NR+ IL+AVL + L + QDVF+N+ Sbjct: 298 AMEGTRPILLEVQALTARTTFGIPRRMVSGYDANRITILIAVLEKRLNLPLEMQDVFINI 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGVK+ ETSADLA+ A++S+ P+D++VFGEVGLAGE+R V ER+SEA K Sbjct: 358 AGGVKIKETSADLAVACAIMSANSGFICPKDIIVFGEVGLAGEVRSVTFTAERLSEAEKL 417 Query: 423 GFRRAIVPAANVPKKAPEG-MQIFGVKKLSDALSVF 457 GF++AI+P +N+ + +G + + G + L A+ Sbjct: 418 GFKKAIIPKSNLKNLSYKGKIDVLGTETLRSAVKFL 453 >UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B3QT35_CHLT3 Length = 459 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 195/461 (42%), Positives = 285/461 (61%), Gaps = 8/461 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K +VC+ CGA ++QG+C C +W T+TE + +P + +++ Sbjct: 1 MAKA-KTRYVCSNCGAVSIKYQGKCFECGSWGTLTEESVEPAPTFS--QKIHSKHSPNVR 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++ S++ E R ST +E DRVLGGG++ S +L+GG PG GKSTL+LQ L Sbjct: 58 VKPKRFSELEDIEEERLSTRIEELDRVLGGGLMTASVVLVGGEPGIGKSTLMLQLAANLV 117 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 LY++ EESL Q+ RA+R+ + ++++ ++SET +E I E+P ++++DSIQ Sbjct: 118 -GKSILYISAEESLHQIRNRAYRMNIRSEDILLVSETQLENILDTVAAEKPDVLIVDSIQ 176 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + +SSPG+V QVRE + L AK G+ + ++GH+TK+G++AGPKVLEH +D Sbjct: 177 TIFSIGFESSPGTVTQVRECTSKLMHLAKREGITVFIIGHITKEGTIAGPKVLEHIVDTV 236 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD R+R LR+ KNRFG+ NE+GVF MTE GL EV+NPS FL+ SGS V Sbjct: 237 LQFEGDNHYRYRILRALKNRFGSTNEIGVFEMTEMGLSEVTNPSEAFLAERSFGVSGSCV 296 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG RPLLVEIQALV + P+R++ G +Q RL++LLAVL + GL M QDVF+ Sbjct: 297 CASLEGARPLLVEIQALVSKTNYTVPQRISSGFDQRRLSLLLAVLEKRIGLSMWSQDVFL 356 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N GG+++ E + +LA+ +A+ S +RD P V GE+GLAGE+R V + RI EA Sbjct: 357 NAAGGLRLLEPAVELAVCVAIASGMRDIPADSATVAIGEIGLAGELRAVSHIERRIIEAE 416 Query: 421 KHGFRRAIVPAANVPK----KAPEGMQIFGVKKLSDALSVF 457 K GF R I+P +N + + ++I L+ AL F Sbjct: 417 KLGFERVILPKSNRENLKASRVNKQIEIVFSPTLNHALDAF 457 >UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria RepID=Q13X95_BURXL Length = 458 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 262/465 (56%), Positives = 342/465 (73%), Gaps = 13/465 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK ++C+ECG P+W GQC +C+AWNT+ E +A +P R + A Sbjct: 1 MAK-PKTVYICSECGGQSPKWAGQCPSCNAWNTLVE-SVAEAPSTHR------FQSLAKS 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A V++L+DI ++PRF+TG EFDRVLGGG+VPG +LIGG+PG GKSTLLLQ+L ++A Sbjct: 53 APVRRLADIEASDVPRFTTGVSEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIA 112 Query: 121 QQMKTLYVTGEESLQQVAMRAHRL-----GLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 + LY++GEES Q+A+RA RL G L +L+E +E+I E++P + V Sbjct: 113 ADKRALYISGEESAAQIALRAQRLSLLEPGSRASELQLLAEIQLEKIQATIAEQRPDVAV 172 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 IDSIQ ++ + S+PGSVAQVRE AA LTR AK G I+MVGHVTK+G+LAGP+VLEH Sbjct: 173 IDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEH 232 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +GD S +R +R+ KNRFGAVNELGVFAMTE+GLR V+NPSA+FLS+ ++ Sbjct: 233 IVDTVLYFEGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSV 292 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 +GS V+V EGTRPLLVE+QALVD + NPRR+AVGLEQNRLA+LLAVLHRH G+ D Sbjct: 293 AGSCVLVTQEGTRPLLVEVQALVDAANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFD 352 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 QDVF+N VGGVK+TE +ADLA+LLA+ SS+R++PLP+ LVVFGEVGLAGEIRP P GQER Sbjct: 353 QDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQER 412 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 + EAAK GF A++P AN PK+ EG+Q+ V+++ A+ L Sbjct: 413 LKEAAKLGFSVAVIPRANAPKQPIEGLQVVAVERIEQAIDRVRTL 457 >UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QF93_9SPHI Length = 461 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 282/459 (61%), Gaps = 6/459 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP--MVARNERLSGYAGSA 58 MAK K F C CG +W G+C AC WNTI E + SG G Sbjct: 1 MAK-LKTTFFCQSCGNQSAKWMGRCPACGEWNTIVEEVVQKDEPEKGGWRSPSSGPGGLK 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 AK + + I+ EE PR +T E +RVLGGG+V GS +LIGG PG GKSTLLLQ Sbjct: 60 IAAKPKAIHAINYEEQPRVTTTDGELNRVLGGGIVAGSLVLIGGEPGIGKSTLLLQIALS 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 LA ++ LYV+GEES QQ+ MRA RL PT + ++++ETS + I + E +P++++IDS Sbjct: 120 LA-GLRVLYVSGEESEQQIKMRAERLDAPTSDCHVMTETSTQNIFRVVEHFEPEVLIIDS 178 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ M + V+S GSV+QVRE A ++AK GV + M+GH+TK+GSLAGPKVLEH +D Sbjct: 179 IQTMQSSLVESGAGSVSQVRECTAEFMKYAKESGVPVFMIGHITKEGSLAGPKVLEHMVD 238 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +GD + +R LR+ KNRFG+ +ELG++ M GLR+V+NPS I +S+ DE SG Sbjct: 239 TVLTFEGDRHTTYRILRTTKNRFGSTDELGIYEMLGSGLRQVTNPSEILISQRDEALSGV 298 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ + EG RPL++E QALV + P+R + G + RL +LLAVL + GG ++ QDV Sbjct: 299 TIGSMLEGNRPLMIESQALVSVATYGTPQRSSTGFDAKRLNMLLAVLEKRGGFRLGQQDV 358 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 F+N+ GG++V + + DLA+ A+VSS D +P + E+GL GE+R V + RI+E Sbjct: 359 FLNIAGGLRVEDPAIDLAVCAAIVSSYEDIAIPPSVAFAAEIGLGGEVRAVSRIESRIAE 418 Query: 419 AAKHGFRRAIVPAANVPKKAPEG--MQIFGVKKLSDALS 455 A K GF++ + N+ + + I V +L + Sbjct: 419 AEKLGFKKMFISKYNLKGLDTKSYKIDINPVSRLDEVFQ 457 >UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteria RepID=RADA_STRP6 Length = 453 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 187/444 (42%), Positives = 273/444 (61%), Gaps = 8/444 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG P++ G+C C AW++ E AR + + Sbjct: 1 MAKK-KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNAR------VSLAGEK 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL D+ R T EF+RVLGGGVVPGS ILIGG+PG GKSTLLLQ +LA Sbjct: 54 SRPVKLKDVDNISYHRTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LYV+GEES +Q+ +R+ RLG + + +ET+++ I E +P ++IDSIQ Sbjct: 114 NKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFLIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + D+ GSV+QVRE A L + AKT +A +VGHVTK+G+LAGP++LEH +D Sbjct: 174 TIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ FR LR+ KNRFG+ NE+G+F M GL EV NPS +FL + +GS+V Sbjct: 234 LYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAV 293 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 +V EG+RP+L E+Q+LV ++ N RR GL+ NR+++++AVL + GL + +QD ++ Sbjct: 294 VVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL 353 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GGVK+ E + DLA+ +A+ SS +++P GE+GL GEIR V ++RI+EAA Sbjct: 354 KSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAA 413 Query: 421 KHGFRRAIVPAANVPK-KAPEGMQ 443 K GF + P + P+G++ Sbjct: 414 KLGFTKVYAPKNALQGIDIPQGIE 437 >UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocaceae RepID=UPI0001C1683A Length = 522 Score = 566 bits (1458), Expect = e-160, Method: Composition-based stats. Identities = 202/504 (40%), Positives = 296/504 (58%), Gaps = 54/504 (10%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK F+C+ CG+++ +W G+CS C ++++ E + + + + Sbjct: 1 MAK-PKTIFICSNCGSEFSQWFGKCSNCDTYDSLVEQNANSFGVGGWHSAQPSAKSTKPS 59 Query: 61 AKVQKLS--DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 L+ IS ++ R+ +G+ E DRVLGGGVVPGS +LIGG+PG GKSTLLLQ + Sbjct: 60 KPRASLTFDQISDRQIARWESGYSELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNE 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLP------------------------------- 147 L+Q+ + LYVTGEES QQV +RA RLG+ Sbjct: 120 LSQRYRILYVTGEESGQQVKLRASRLGMSKPLQVVSMEDSNTSSESSHPLPETDPGNNVG 179 Query: 148 ----------------TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSP 191 + +L +L ET +E+I + +P L VIDSIQ + + S+P Sbjct: 180 DAVEDNHRVTVEHHTISSDLYVLPETDLEEILREIDSLKPNLAVIDSIQTVFFPALTSAP 239 Query: 192 GSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRF 251 GSVAQVRE A L + AK + +++VGHVTK+G++AGP+VLEH +D + +GD + Sbjct: 240 GSVAQVRECTAALMKVAKHEDITMLIVGHVTKEGTIAGPRVLEHLVDTVLYFEGDRFASH 299 Query: 252 RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLL 311 R LR+ KNRFGA +E+G+F M GLREV NPS +FL DE + G++++V EGTRP++ Sbjct: 300 RLLRTVKNRFGATHEIGIFEMVSNGLREVPNPSELFLGNRDEPSPGTAIVVACEGTRPIV 359 Query: 312 VEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTET 371 VE+QALV + +PRR G++ NRL +LAVL + G+ M+ D +V GG+ V E Sbjct: 360 VELQALVSPTSYPSPRRAGTGVDFNRLVQILAVLEKRVGVPMSKLDSYVASAGGLSVEEP 419 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 + DL + +A+V+S RDR + V+ GEVGL G++R V + R+ EAAK GF+RAI+P Sbjct: 420 AVDLGIAVAIVASFRDRIVDPQTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIIPK 479 Query: 432 ANVPKKAPE-GMQIFGVKKLSDAL 454 +K P+ ++I V K+ DA+ Sbjct: 480 G---QKFPDLKIEILEVSKVIDAI 500 >UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUE9_SYNWW Length = 451 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 198/455 (43%), Positives = 293/455 (64%), Gaps = 12/455 (2%) Query: 7 RAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKL 66 FVC+ECG + P+W G+C C AWN++ E ++ P+ ER++ L Sbjct: 6 SKFVCHECGYETPKWLGKCPGCSAWNSLLEESISNKPLRRTAERVA----------AIPL 55 Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKT 125 + +S E+ PRFS+G EFDRVLGGG+VPGS IL+GG+PG GKSTLLLQ A + Sbjct: 56 NQLSAEDSPRFSSGLSEFDRVLGGGIVPGSLILLGGDPGIGKSTLLLQVAGLIAAAGKRI 115 Query: 126 LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185 LY++GEESLQQ+ +RA RLG+ D + +L+E I+ + + P L++IDSIQ ++ + Sbjct: 116 LYLSGEESLQQIRLRASRLGINNDTIFLLNEQDIDLLHEYINDLDPDLIIIDSIQTVYSS 175 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245 + S PGSV+Q+RE+ A + + AK A+ +VGHVTKDGSLAGPKVLEH +D V +G Sbjct: 176 KLSSIPGSVSQLRESTAAVMQIAKKMDKAVFLVGHVTKDGSLAGPKVLEHIVDVVVYFEG 235 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE 305 + + FR LR+ KNRFGA +E+ + M+ QGL EV +PS +FLS G +++SG++++ E Sbjct: 236 EKNFSFRLLRAAKNRFGATDEIALLEMSGQGLVEVPDPSYVFLSPGRDISSGTAIVASME 295 Query: 306 GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGG 365 G+RPLL+EIQALV PRR+ G++QNRL++++AVL + G ++ DV++ V GG Sbjct: 296 GSRPLLIEIQALVSSLGAGYPRRMVSGIDQNRLSLIIAVLEKRRGYTLSACDVYLKVSGG 355 Query: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 V + + S DL + A++SS ++PL D V GE+ L+G+IRPV R+ E + G++ Sbjct: 356 VFLKDPSVDLGIAAAVLSSYLEKPLAMDTVFIGEISLSGQIRPVSFLDLRLREIDRMGYK 415 Query: 426 RAIVPAA-NVPKKAPEGMQIFGVKKLSDALSVFDD 459 R IVP + K+ M+I VK L + + + Sbjct: 416 RVIVPTSPGRLAKSSHNMEILEVKSLDHFIDIVLE 450 >UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacteria RepID=RADA_STRP3 Length = 453 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 185/444 (41%), Positives = 271/444 (61%), Gaps = 8/444 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG P++ G+C C AW++ E AR + + Sbjct: 1 MAKK-KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNAR------VSLAGEK 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL D+ R T EF+RVLGGGVVPGS ILIGG+PG GKSTLLLQ +LA Sbjct: 54 SRPVKLKDVDNISYHRTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LY +GEES +Q+ +R+ RLG + + +ET+++ I E +P ++IDSIQ Sbjct: 114 NKGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFLIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + D+ GSV+QVRE A L + AKT +A +VGHVTK+G+LAGP++LEH +D Sbjct: 174 TIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ FR LR+ KNRFG+ NE+G+F M GL EV NPS +FL + +GS+V Sbjct: 234 LYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAV 293 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 +V EG+RP+L E+Q+LV ++ N RR GL+ NR+++++AVL + GL + +QD ++ Sbjct: 294 VVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL 353 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GGVK+ E + DLA+ +A+ SS +++P GE+GL GEIR V ++RI+EAA Sbjct: 354 KSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAA 413 Query: 421 KHGFRRAIVPAANVPK-KAPEGMQ 443 K GF + P + +G++ Sbjct: 414 KLGFTKVYAPKNALQGIDISQGIE 437 >UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=B7KLK4_CYAP7 Length = 520 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 205/490 (41%), Positives = 307/490 (62%), Gaps = 38/490 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS-PMVAR-----NERLSGY 54 MAK+ K ++CN CG++ P+W G+C +C + ++ E ++ + P++AR N R +G Sbjct: 1 MAKS-KTIYICNACGSESPQWFGKCPSCGVYGSLEEQIISQNNPLIARGGWQSNSRQNGK 59 Query: 55 AGSAGVAKV-QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 A ++ + S I+ EE RF++G+ E DRVLGGG+VPGS +LIGG+PG GKSTLLL Sbjct: 60 ASGPAQPRISLRFSQITQEEQARFASGYGELDRVLGGGIVPGSLVLIGGDPGIGKSTLLL 119 Query: 114 QTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGLPT------------------------ 148 Q +L+Q++ + LYV+ EES QQV +RA RLG+ Sbjct: 120 QVANRLSQRLPRILYVSAEESGQQVKLRAQRLGVGVVETPPEESENGKGKKRNKSTQKDL 179 Query: 149 ----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 +NL +L ET +E+I E +P+ VIDSIQ ++ A + S+PGSVAQVRE + L Sbjct: 180 NNADNNLYVLPETDLEEILRELESLKPQAAVIDSIQTLYFAALTSAPGSVAQVRECTSAL 239 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAV 264 + AK + + +VGHVTK+G++AGP+VLEH +D + +GD + R LRS KNRFGA Sbjct: 240 MQVAKRENITLFIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGAT 299 Query: 265 NELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMA 324 +E+G+F M ++GL EV NPS +FL DE+ G++ +V EGTRP++VE+QALV + + Sbjct: 300 HEIGIFEMVDKGLVEVENPSELFLGNRDELIPGTATIVACEGTRPIVVELQALVSPTSYS 359 Query: 325 NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSS 384 +PRR G++ NRL +LAVL + G+ ++ D +V GG+ V E +ADL + +A+V+S Sbjct: 360 SPRRSTTGVDYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLGMAIAVVAS 419 Query: 385 LRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQI 444 RDR + ++ GEVGL G++R V + R+ EA K GF+RAIVP + G+++ Sbjct: 420 FRDRVVDPRTILIGEVGLGGQVRLVSQMELRLKEATKLGFKRAIVPKGQSYPEDI-GLEV 478 Query: 445 FGVKKLSDAL 454 V K+ DA+ Sbjct: 479 VAVGKVIDAI 488 >UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteria RepID=RADA_SYNY3 Length = 505 Score = 562 bits (1450), Expect = e-159, Method: Composition-based stats. Identities = 203/480 (42%), Positives = 298/480 (62%), Gaps = 26/480 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA + FVC+ CGAD+ +W G+C CH + ++ E + A + L + Sbjct: 1 MAKA-RTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSRSSK 59 Query: 61 AK------VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 K S I E RF +G+ E DRVLGGG+VPG+ ILIGG+PG GKSTLLLQ Sbjct: 60 VKTGQPQAALTFSQIRQENQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQ 119 Query: 115 TLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGLPTD-----------------NLNMLSE 156 +LA ++ + LYV+ EES QQ+ +RA RLG+ NL +L E Sbjct: 120 VAFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLFVLPE 179 Query: 157 TSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIV 216 T+++ I E QP++ +IDSIQ ++ + S+PGSV+QVRE L + AK +++ Sbjct: 180 TNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLF 239 Query: 217 MVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG 276 +VGHVTK+G++AGPKVLEH +D + GD + R LRS KNRFGA E+G+F M + G Sbjct: 240 IVGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSG 299 Query: 277 LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQN 336 L+EV NPS +FL +E SG+++ V EGTRPL+VE+QALV + A+PRR G++ N Sbjct: 300 LQEVLNPSQLFLGSREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYN 359 Query: 337 RLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 RL +LAVL + G+ ++ D +++V GG++V E + DLA+ +A+V+S RDR + +++ Sbjct: 360 RLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRVVDPTMII 419 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 GE+GL G+IRPV + R+ EAAK GF++AIVP ++ G+++ V K+ A++V Sbjct: 420 LGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKGQTGIES-AGIKLIPVGKVFAAIAV 478 >UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acetobutylicum RepID=Q97EC5_CLOAB Length = 450 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 190/457 (41%), Positives = 278/457 (60%), Gaps = 12/457 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+K K FVC ECG +W G+C +C++WN+ E + ++ S Sbjct: 1 MSKV-KSFFVCQECGYQSVKWLGKCPSCNSWNSFVEEERVENKKASKITLNS-------- 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + +++I + R+ T E +RVLGGG+V GS LI G PG GKSTLLLQ +A Sbjct: 52 -EPKCINNIKSGQYERYDTNNTELNRVLGGGLVKGSITLISGAPGIGKSTLLLQICQDIA 110 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LYV+GEES Q+ MR RLG+ + N+ +L+ET++E I E +P ++IDSI Sbjct: 111 LKYGKVLYVSGEESEHQIKMRGDRLGVTSANIYILAETNMESIERHVENIKPAFVIIDSI 170 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+PGSV+QVRE A + R AKT + +V HVTK G LAGP+VLEH +D Sbjct: 171 QTLYKDQITSAPGSVSQVRECANDIMRIAKTDNIPFFIVAHVTKQGELAGPRVLEHIVDT 230 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G FR LR+ KNRFG +E+GVF M E+GL ++ NPS++FL + GS Sbjct: 231 VLTFEGQRTEEFRILRTVKNRFGTTSEIGVFEMKEEGLEQIHNPSSLFLEETNFNQEGSV 290 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+ + EGTRP+LVEIQALV + PRR +VG++ +RL ++LAVL + + + DV+ Sbjct: 291 VIGIMEGTRPILVEIQALVSKTNAVMPRRTSVGIDSSRLNLILAVLEKKLKVPFYNCDVY 350 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD-LVVFGEVGLAGEIRPVPSGQERISE 418 VNVVGG+ + T DL L LA+VSS++ + D ++V GE+GL GE+RPV ++E Sbjct: 351 VNVVGGLNIEGTYGDLGLALALVSSVKGVSIKLDKMIVVGEIGLTGEVRPVSFSDRIVNE 410 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 A K GF+ ++P N+ + I GV L +A++ Sbjct: 411 ADKLGFKNILMPQKNIKNDKNIAINIIGVSYLKEAVN 447 >UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE34_9FIRM Length = 456 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 192/458 (41%), Positives = 284/458 (62%), Gaps = 7/458 (1%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 AK+ +VC +CG +W G+C C AW+++ E A + Y +A Sbjct: 4 AKSV-TKYVCQKCGYASVKWLGKCPECGAWDSLVEEVDAPV-----DRHRPSYLKTAEHV 57 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA- 120 + L ++ ++ R TG EFDRVLGGG+VPGS IL+GG PG GKST+ L K A Sbjct: 58 APKTLREVDKVKVNRIPTGITEFDRVLGGGIVPGSLILLGGAPGIGKSTITLDVSMKAAN 117 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + + LYV+GEES Q AMRA RLG +D L +++ T + I + A ++ PKL+VIDSIQ Sbjct: 118 RGIPVLYVSGEESEAQTAMRAERLGTASDALKVMTATELGTILVEARKDAPKLLVIDSIQ 177 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 M+ ++++++ GSV QVRE A L FAK +AI+++GHVTK+G++AGP++LEH +D Sbjct: 178 TMYNSELETAAGSVGQVRECTAKLLNFAKESNIAIIIIGHVTKEGNIAGPRLLEHMVDVV 237 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD +R LR+ KNRFG+ +E G+F+M +GL+EVSNPS +FL ++ GS + Sbjct: 238 LQFEGDRSYTYRVLRALKNRFGSTSECGIFSMEAEGLQEVSNPSGLFLETKEKPVPGSVI 297 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG RP+L EIQAL H+ PRR AVG++ NR+ +L+A+L + G+ DQD +V Sbjct: 298 TATIEGNRPILAEIQALAAHTPFGMPRRTAVGVDYNRVNMLIAILEKRMGMNFGDQDAYV 357 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 + VGG+K+TE + DLA++ A+VSS R+ P+ ++ GEVGL GE+R V RI EAA Sbjct: 358 SAVGGMKITEPAVDLAIVGALVSSYRNVPVGAGILCLGEVGLTGELRRVGLTDRRIKEAA 417 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 + GF+R IVP + + + + +A+ Sbjct: 418 QLGFKRFIVPRGSFMNGKKAPAGVVECRTVEEAIGAMF 455 >UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri DSM 18205 RepID=D1P982_9BACT Length = 494 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 206/496 (41%), Positives = 293/496 (59%), Gaps = 39/496 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLS-------- 52 MAK K AFVC+ CG + +W G+C +C WNT E+R+AA + Sbjct: 1 MAK-DKIAFVCSNCGQESAKWMGKCPSCGQWNTFKEIRIAADSGSQAAKNAVMTMRHGGA 59 Query: 53 ----GYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGK 108 G S A KL DIS + PR +E +RVLGGG+VPGS L+GG PG GK Sbjct: 60 ATMFGGQHSEHDAAPMKLRDISAIDEPRIDMRDEELNRVLGGGMVPGSITLLGGEPGIGK 119 Query: 109 STLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGL---------------------- 146 STL LQT+ + + + LYV+GEES Q+ +RA RL Sbjct: 120 STLTLQTILNMTDR-RILYVSGEESAHQIKLRADRLAKGQAMLREGSSADTLKTASLSSE 178 Query: 147 -PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 D++ +L ET +E+I +E P+L+VIDSIQ + +V SSPGSV+QVRE AA L Sbjct: 179 GAFDHITVLCETQLEKIFSHIQEVAPQLIVIDSIQTIAAEEVDSSPGSVSQVRECAASLL 238 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 RFAKT G+ ++++GH+ K+G+LAGPK+LEH +D + +GD +R LRS KNRFG+ + Sbjct: 239 RFAKTSGIPVILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTS 298 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMAN 325 ELG++ M + GLR+VSNPS + L+ + SG ++ EG RP LVE QALV + Sbjct: 299 ELGIYEMMQGGLRQVSNPSELLLTEDHDGLSGVAISAAIEGVRPFLVETQALVSTAAYGT 358 Query: 326 PRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSL 385 P+R A G +Q RL +LLAVL + G ++ +DVF+N+ GG++VT+ + DL++L A++SS Sbjct: 359 PQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDPAMDLSVLAAVLSSN 418 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP--KKAPEGMQ 443 D P+ Q + GEVGL+GE+RPV ++RI+EA K GF+ I+P N ++ Sbjct: 419 VDTPIEQGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFQHIIIPKYNNHGFDHKKYKIE 478 Query: 444 IFGVKKLSDALSVFDD 459 I V+K+ +A Sbjct: 479 IHPVRKVEEAFRCLFG 494 >UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquificales RepID=RADA_AQUAE Length = 444 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 195/455 (42%), Positives = 286/455 (62%), Gaps = 13/455 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K A+VC ECG +W G+C +C WNT+ E S + + E + V Sbjct: 3 KNKTAYVCQECGYKSVKWLGKCPSCGEWNTLVEEFEPQSFSLVKKE----------PSLV 52 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 ++D EE R +TGF+ D LGGG+V G ILI G PG GKSTLLLQ ++A Sbjct: 53 LPVTDWEKEEHERETTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVANGK 112 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 K LYV+GEES Q+A+RA RLG+ +NL + E ++E+I E+E+P L+V+DS+Q + Sbjct: 113 KVLYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPSLLVLDSVQTIF 172 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 ++SS GSV+QVRE +T F K + V +VG +TK+GS+AGPKVLEH +D + Sbjct: 173 SERLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPKVLEHIVDTVLQF 232 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +G+ + +R ++ KNRFG+ E+ VF MT++GL EV PSA F+S GS V Sbjct: 233 EGERFNFYRIVKVIKNRFGSTGEIAVFKMTDKGLEEVPEPSAFFISEK-ANAPGSVVFPH 291 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EG++P+L+E+QALV ++ P+R G + NRLA++LAVL + + DQDVFVNV Sbjct: 292 TEGSKPVLLEVQALVIPALYTTPQRRTQGFDPNRLALILAVLEKEAKIFTRDQDVFVNVA 351 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG+ V E +ADLA+ +A+VSS +++ +P+D V+FGEVGL+GEIR V G R+ EA + G Sbjct: 352 GGMSVKEPAADLAVAMAVVSSKKEKEVPKDFVIFGEVGLSGEIRAVHFGDLRLKEAKRFG 411 Query: 424 FRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 F++A++P + + +GM+I+ V + +A+ V Sbjct: 412 FKKALIPKS--LEIEIDGMEIYPVSHIQEAIEVLF 444 >UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4A3_NATTJ Length = 456 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 199/456 (43%), Positives = 290/456 (63%), Gaps = 4/456 (0%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK 62 K ++C +CG +W G+C AC WNT + P +++ G + S ++ Sbjct: 2 KKSTIYYMCLDCGHTELKWLGKCPACSNWNTF--QKKYQQPSDNKHKSNIGSSESEQSSQ 59 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQ 121 V LS+I LE+ PR ST E DRVLGGG+VPGS +L GG+PG GKSTL+LQ L Sbjct: 60 VITLSEIDLEKEPRMSTSIDELDRVLGGGIVPGSVVLFGGDPGIGKSTLMLQASHNLDTL 119 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 TLYV+GEESL Q+ +R RLGL +++L S T + ++ E++P++++IDSIQ Sbjct: 120 NFSTLYVSGEESLSQLKLRCERLGLNSESLLFASITDLRELENRLNEQKPQILIIDSIQS 179 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 ++ ++++ PGS++QV+ AA L AK +A ++VGHVTK G +AGPKVLEH +D + Sbjct: 180 LYTPEIEAPPGSLSQVKHCAAVLHSVAKENEIACLIVGHVTKAGQIAGPKVLEHIVDTVL 239 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 +GD +R LRS KNRFG + E+GVF M + GL+E++NPS +FL + + T GS+++ Sbjct: 240 YFEGDHHQDYRILRSIKNRFGPI-EIGVFEMRQTGLQEITNPSKLFLRKRPDYTVGSAIL 298 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 EGTR LVEIQALV S + PRRV G++ NR A++ AVL + GL + D+F+N Sbjct: 299 PSLEGTRAFLVEIQALVSTSQLGTPRRVVTGIDSNRAALITAVLEKKSGLHLVGDDIFIN 358 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 VVGG KV E +ADLA+ L+++SS +++ P DLVV GE+GL GEIR ++R+ EA + Sbjct: 359 VVGGAKVAEPAADLAVALSLISSFKEQGFPGDLVVMGEIGLTGEIRSCNQPEKRLLEAER 418 Query: 422 HGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 GF++AI+P A ++I+ V L D L + Sbjct: 419 MGFKKAILPEACRLNHHQGNIEIYPVSYLKDVLEIL 454 >UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y821_NITMU Length = 452 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 259/460 (56%), Positives = 329/460 (71%), Gaps = 12/460 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ K + C ECG +WQGQC C AWNT+ E + + + + Sbjct: 1 MAKS-KSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAM--------SEKAAARFTPVSES 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +VQ LS++ EE R+STG EFDRVLGGG+V G +L+GG+PG GKSTLLLQ LC ++ Sbjct: 52 REVQSLSEVEAEEEQRYSTGLLEFDRVLGGGLVQGGVVLLGGDPGIGKSTLLLQALCNMS 111 Query: 121 Q---QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 LYV+GEES +QVAMRA R+G+ L++L+E +E+I + E +P + VID Sbjct: 112 LLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVLAERKPDVAVID 171 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ ++ +QS+PGSVAQVRE AA LTR AK G +++VGHVTK+G+LAGP+VLEH + Sbjct: 172 SIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMV 231 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + +GD S FR +R+ KNRFGAVNELGVFAMTE+GLREVSNPSA+FLS G Sbjct: 232 DTVLYFEGDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPG 291 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S +MV EGTRPLLVEIQALVD + N RR++VGLEQNRLA+LLAVLHRH G+ DQD Sbjct: 292 SCIMVTQEGTRPLLVEIQALVDEAHSPNARRLSVGLEQNRLAMLLAVLHRHAGIACFDQD 351 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 VFVN VGGVK+TE ADLA+LLA+VSSL++RPLP+ VVFGEVGLAGE+RPV G ER+ Sbjct: 352 VFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEVRPVQRGLERLR 411 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 EAAK GF +AIVP AN PK P G++I V+++ +A++ Sbjct: 412 EAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVARM 451 >UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJQ7_BDEBA Length = 463 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 212/463 (45%), Positives = 297/463 (64%), Gaps = 10/463 (2%) Query: 1 MAK-APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMV---ARNERLSGYAG 56 MAK K + C CGA PRW+G+CS C AWN+ E + G Sbjct: 1 MAKSKTKTIYTCQNCGAQRPRWEGKCSDCGAWNSYVEELQMPEVKTRGWSTGSGERESTG 60 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 S VA Q+L ++ L+ RF T F+E +RVLGGG+ GS +L+GG+PG GKSTLLLQ Sbjct: 61 SKPVALDQRLEEVKLD---RFDTSFEELNRVLGGGLAKGSFVLLGGSPGIGKSTLLLQMA 117 Query: 117 CKLAQ-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 LA + K LY++GEES+ Q RAHRLG+ + + + E+++ + +A ++P ++V Sbjct: 118 GGLANNKHKVLYISGEESVSQTGSRAHRLGIRSPLIEVGCESNLTAVMEMARFKKPDVLV 177 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DSIQ M + D+Q++PGSV+QVRE A +L AK G+ ++++GHVTKDG++AGPKVLEH Sbjct: 178 VDSIQTMFLPDLQAAPGSVSQVRECAGHLMGLAKHDGITVILIGHVTKDGNIAGPKVLEH 237 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +DC + DGD FR LRS KNRFGA +ELGVF M +GL EVSNPS +FL + Sbjct: 238 MVDCVLSFDGDISYNFRLLRSLKNRFGAAHELGVFQMNSKGLEEVSNPSELFLEERGDQL 297 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 GS+V EGTRPLL E+QAL S MA PRR A+G++ NRL +L AVL RH +++A Sbjct: 298 IGSAVFASMEGTRPLLCEVQALTLSSPMAMPRRTALGIDINRLHLLTAVLDRHLDVRLAH 357 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+F+NVVGG+K+ E ++DLA+ A++S+ R L FGE+GL GE+R V ++R Sbjct: 358 NDIFINVVGGLKLVEPASDLAVAAAILSTEHRRDLDAKTCYFGEIGLTGEVRGVSFVEQR 417 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 I EA K GF+ ++P +N K+ E +++ KK+S +V D Sbjct: 418 IKEADKLGFKHFVIPFSN--KRHLEDVKLSKDKKISFVKNVHD 458 >UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepID=C0R005_BRAHW Length = 462 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 181/459 (39%), Positives = 271/459 (59%), Gaps = 3/459 (0%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK FVC+ CG W G+C +C +WN++ S ++ R S+ Sbjct: 1 MAKKNNTIFVCDNCGESTINWMGKCPSCGSWNSLKPFTE-PSQDSNKSIRERTSTSSSDK 59 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A + L I + R ST E +RVLGGG+V GS ILIGG PG GKSTLLLQT +A Sbjct: 60 ASLTPLKKIKTNDRTRISTNIDELNRVLGGGIVQGSVILIGGEPGIGKSTLLLQTASNIA 119 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + K Y TGEESL+Q+ +RA RL L + + SE++ + I ++ P L +IDSIQ Sbjct: 120 KNEKVYYFTGEESLEQIKLRADRLTLEDSDFLISSESNCDNIINTLLDDTPSLAIIDSIQ 179 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ S GS AQ++ A L + AK + + I +VGH+TK+G++AGPK+LEH +DC Sbjct: 180 TIYSPSTNSIAGSPAQIKNCAWALMQTAKLKNITIFLVGHITKEGTIAGPKILEHIVDCV 239 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT-SGSS 299 + +GD +R LR+ KNR+GAV+E+G+F M E+GL EV +PS +F +E +G+ Sbjct: 240 LYFEGDDKGIYRILRAVKNRYGAVDEVGIFEMAEKGLMEVKDPSRVFTRGVNETVFAGNV 299 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V V EG+R VE +ALV S PRR+ +G +Q RL I++A+L + L +++QDV+ Sbjct: 300 VTPVIEGSRVFCVEQEALVGSSAFGYPRRLTIGYDQYRLLIIIAILEKRAHLNLSNQDVY 359 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV G+ V ET++DLA+ +A+ SS+ + + GE+GL+GE+RPV + RI E Sbjct: 360 INVANGLNVKETASDLAIAMAIASSMSGISIQRTTAYIGELGLSGEVRPVRFIERRIKEM 419 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALSVF 457 K + + V + K P ++I G+ +S+A+ Sbjct: 420 QKFSLKEVYISKRAVKEIKNPGDIKIIGIDHISEAVKRL 458 >UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae RepID=C6JJB8_FUSVA Length = 463 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 175/463 (37%), Positives = 270/463 (58%), Gaps = 7/463 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K +VC+ECG +W G+C C+ W T E S S + Sbjct: 1 MAK-NKSFYVCSECGYKSSKWLGKCPQCNEWGTFEEEIEIIS--AGAPVVSSVISVKETA 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 KV SDI +E++ R+ TG +EFDRVLGGG++ G +L+ GNPG GKSTLLLQ + Sbjct: 58 EKVYSFSDIKMEDMYRYKTGIEEFDRVLGGGLLQGEVVLVTGNPGIGKSTLLLQVADRYT 117 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +Y++GEES QV R RL + +L +++ET + I ++PK++++DSIQ Sbjct: 118 SYGTVIYISGEESPSQVKNRGERLKISAKDLFLMAETDVSNIYEYLIAKKPKVVIVDSIQ 177 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ + + S PG+ Q+RE + AK ++ +VGH+TKDG +AGPK+LEH +D Sbjct: 178 TLYNSSIDSIPGTPTQIRECTLKIIELAKKYNISFFIVGHITKDGKVAGPKMLEHMVDAV 237 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 +G+ +R LRS KNRFG+ NEL VF+M E G++E+ N S FLS DE +GS V Sbjct: 238 FNFEGEEGLFYRILRSTKNRFGSTNELAVFSMEEDGMKEIKNSSEYFLSERDEKNAGSMV 297 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + V EGT+ L+EIQ L+ S + P+R+ G ++NR+ IL A+ + + +A +D+FV Sbjct: 298 VPVLEGTKVFLLEIQTLLTESNIGIPKRIVQGFDRNRIQILTAIAEKKMHMSLAMKDMFV 357 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N+ GG+ + + +ADLA+L++++S R + Q + GE+GL GEIR V ++R+ E Sbjct: 358 NIPGGLSIEDPAADLAVLISLLSVYRGVEISQKIAAIGELGLRGEIRKVFFIEKRLRELE 417 Query: 421 KHGFRRAIVPAANVPKKAPEG----MQIFGVKKLSDALSVFDD 459 K GF+ +P AN + +++ +K L + L + Sbjct: 418 KLGFKGVYIPEANRKEIEKNSYKYKLKLIYLKNLEELLERMNK 460 >UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C33601 Length = 484 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 194/481 (40%), Positives = 298/481 (61%), Gaps = 28/481 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE--VRLAASPMVARNERLSGYAGSA 58 MAK + +VCN CG + +W G+C +C + ++ E V +S S Y+ Sbjct: 1 MAKK-RNVYVCNICGTESVQWFGKCESCQTYGSLEEKIVVTPSSSDNILRRERSLYSNKE 59 Query: 59 GVAKVQK-------LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 ++ +I E +F +G+ E DRVLGGGVVPGS +LIGG+PG GKSTL Sbjct: 60 NNSRATPKPNISNYFDEIVDNEKMQFQSGYDELDRVLGGGVVPGSLVLIGGDPGIGKSTL 119 Query: 112 LLQTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGL----------------PTDNLNML 154 LLQ KLAQ++ + LY++ EES QQ+ +RA RL + NL +L Sbjct: 120 LLQVANKLAQKLPRILYISAEESAQQIKLRASRLMMLGTEEKHIERKELERCNRKNLFIL 179 Query: 155 SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 SET++E+I E QP++ +IDSIQ ++++ + S+PGSV+QV+E + L R AK + Sbjct: 180 SETNLEEILRELESLQPQVAIIDSIQTLYLSTLNSAPGSVSQVKECTSVLMRLAKRDNIT 239 Query: 215 IVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTE 274 +++VGHVTK+G++AGP+VLEH +D + +GD + R LRS KNRFGA +E+G+F M E Sbjct: 240 LLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRVLRSVKNRFGATHEIGIFEMIE 299 Query: 275 QGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE 334 GL EV NPS +F+ +E+ G++++V EGTRPL+VE+QALV + +PRR G+ Sbjct: 300 SGLVEVKNPSELFMGNQNELVPGTAIVVACEGTRPLVVELQALVSPTSYPSPRRSTTGIA 359 Query: 335 QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 +RL +LAVL + G+ ++ DV+V+ GG+ V E +ADL + +A+ +S++D+ + + Sbjct: 360 YSRLQQILAVLEKRVGIPLSKLDVYVSSTGGLGVEEPAADLGIAIAITASVKDKVIIPNT 419 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 ++ GEVGL G++R VP + R+ EA K GF RAIVP + +++ V K++DA+ Sbjct: 420 ILIGEVGLGGQVRSVPQLELRLKEAVKLGFTRAIVPNS-KNYTFNVNLKVIPVGKVTDAI 478 Query: 455 S 455 + Sbjct: 479 N 479 >UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=Q31N87_SYNE7 Length = 478 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 212/471 (45%), Positives = 294/471 (62%), Gaps = 20/471 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS---------PMVARNERL 51 MA++ + +VC CG PR+ G+C AC +WN++ E +A + P R +RL Sbjct: 1 MARS-RSEYVCQNCGHRAPRYVGRCPACESWNSLVEEAIAPTAKTAIATVLPSRQRRDRL 59 Query: 52 SGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 + A A Q LS I+ R ++G EFDRVLGGG+VPGS +LIGG+PG GKSTL Sbjct: 60 AEAPPQAVAA--QPLSAIADVSQQRIASGSGEFDRVLGGGLVPGSLVLIGGDPGIGKSTL 117 Query: 112 LLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------GLPTDNLNMLSETSIEQICLI 165 LLQT L+QQ LYV EES QQV +R R+ +L E ++ I Sbjct: 118 LLQTATALSQQQPILYVCAEESGQQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAE 177 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 E +P + +IDSIQ ++ + S+PGSVAQVRE A L R AK + +++VGHVTKDG Sbjct: 178 LETLRPPVAIIDSIQALYSPALGSAPGSVAQVRECTAALMRVAKQLTITLLIVGHVTKDG 237 Query: 226 SLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 ++AGPKVLEH +D + +GD + R LRS KNRFGA ELG+F M ++GL EV NPSA Sbjct: 238 AIAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGASQELGIFEMVDRGLEEVGNPSA 297 Query: 286 IFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 +FL D+ TSG++ +V EGTRPLLVE+QALV S ++PRR G+E NRL +LAVL Sbjct: 298 LFLGSRDQATSGTATIVACEGTRPLLVELQALVSPSSYSSPRRAGTGIEYNRLLQILAVL 357 Query: 346 HRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGE 405 + GL ++ D +V GG+ V E +ADL + +A+V+S RDR L D V+ GE+GL G+ Sbjct: 358 EKRLGLPLSKFDAYVASAGGLNVAEPAADLGIAIALVASFRDRCLRPDTVLIGEIGLGGQ 417 Query: 406 IRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 +RPV + R+ EAAK GF+RA++P ++ +++ V +L DA+ + Sbjct: 418 VRPVSQVELRLKEAAKLGFQRALLPKG--QERCESDLELVPVSRLVDAIGL 466 >UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKL6_FIBSS Length = 463 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 288/459 (62%), Gaps = 5/459 (1%) Query: 3 KAPKRA-FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 K+ K ++C ECG P+W G+C C AW+++ E + + +G V Sbjct: 6 KSKKEIEYLCTECGNTTPKWAGKCPFCGAWSSLKEHVIE---RITDGAGRTGRGLGGPVH 62 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-A 120 KV L D++ E+ R ST EFDRVLGGG PGS +LIGG+PG GKSTL+L TL + A Sbjct: 63 KVVLLKDVAAEDTRRLSTANSEFDRVLGGGFAPGSLVLIGGDPGIGKSTLVLTTLATMNA 122 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +K LYV+GEES QV +R+ RL + ++ +L ET++E+I A+E +P+++VIDSIQ Sbjct: 123 AGVKALYVSGEESACQVKLRSERLNVSGSDMMLLCETNLEKILEQAKEVKPQVLVIDSIQ 182 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ +D+ +PG Q+RE L FAK G +++GHVTKDG +AGP++LEH +D Sbjct: 183 TVYKSDLSGTPGCATQLRECTLDLMVFAKNSGCITILIGHVTKDGQIAGPRILEHMVDTV 242 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 V +GD + ++R LR+ KNRFGA +E+GVF MT GL V NPS +FL G T GS+V Sbjct: 243 VYFEGDRNHQYRLLRTIKNRFGATDEIGVFEMTSHGLNPVLNPSKVFLQEGVPPTPGSAV 302 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG+R LL E QALV+ + A P+RVA G++ RL I+LA+L + GG+ + DVF Sbjct: 303 CCTMEGSRALLFETQALVNQTNFAVPQRVAAGIDPKRLTIILALLEKFGGVTIGASDVFA 362 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 ++ GG+KV + S+DLAL LA+ S+ PL + + GE+GL+GE+R V +R+ EA+ Sbjct: 363 SIAGGMKVNDASSDLALALAVASNHLGIPLSRQTIAIGELGLSGEVRGVSLLDQRLKEAS 422 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 + G A+VPA+ + M++ V LS+A+S D Sbjct: 423 RLGMTEAVVPASCKLSENMGSMKVVRVHSLSEAISWLMD 461 >UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacterium KB13 RepID=B6BU53_9PROT Length = 454 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 220/459 (47%), Positives = 318/459 (69%), Gaps = 13/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ K + C +CG +WQGQC C WN + E + S S + Sbjct: 1 MAKS-KTLYQCQQCGGHSSKWQGQCPHCFEWNCLEEQAVQTS--------TSRFKSLNKK 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + ++++ + E+ R T E DRVLGGG+VPG LIGG+PG GKSTLL+Q L L Sbjct: 52 SNLININEVEINEIFRHPTNNSELDRVLGGGLVPGGVTLIGGDPGIGKSTLLIQALSSLT 111 Query: 121 ----QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 Q++ +Y+TGEES++QVAMRA RL L +L +LSE ++ I + E+E+P ++VI Sbjct: 112 KNPNQEITAIYITGEESIEQVAMRARRLDLEVSDLLVLSEINLGNIITVIEKEKPSVVVI 171 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ + ++ S+PGSV+QVRE AA LTR AK V+++ VGHVTK+GS+AGP+VLEH Sbjct: 172 DSIQTLFSEELNSAPGSVSQVRECAAQLTRVAKANDVSMIFVGHVTKEGSIAGPRVLEHI 231 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +G+++S +R +RS KNR+GAVNELG+++MTE+GL+E+ NPSAIFLS + Sbjct: 232 VDTVLYFEGESNSSYRLVRSIKNRYGAVNELGIYSMTEKGLKEILNPSAIFLSETSFDQA 291 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS V V+ EGTRP+L+E+QALVD S ++P+R++VGLE NR++++LAVL++H GL Sbjct: 292 GSVVTVMQEGTRPILIELQALVDESKQSSPKRLSVGLENNRISMILAVLNKHLGLSCHSH 351 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DVF+N VGGVK++E DLA+L+A+ SSL+++ + ++FGEVGL GE+RPV GQERI Sbjct: 352 DVFLNAVGGVKISEPGVDLAVLIAIASSLQEKQVHSKTLIFGEVGLGGEVRPVVRGQERI 411 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 EA K GF+R I+P N+PKK + +++ V + +AL+ Sbjct: 412 QEAIKLGFKRIILPRKNLPKKTIDDVELIPVDNIKNALN 450 >UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL59_9BACT Length = 445 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 274/446 (61%), Gaps = 12/446 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K +VC CG P W G+C C++W++ E + A +R++ Sbjct: 1 MAKK-KAKYVCQSCGYVSPGWIGKCPECNSWSSFVEEIQVDAATTAIGKRIA-------K 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 AK L D+ E R TG E D+VLGGG+V GS +L+GG PG GKST++LQ L+ Sbjct: 53 AKPVSLKDVKGLETERTPTGMPELDQVLGGGLVKGSVLLVGGEPGIGKSTIMLQCAGILS 112 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + ++K LYV+GEES Q+ +R+ RLG+ + +++LS S+E + EEE+P +++DSI Sbjct: 113 RDRLKVLYVSGEESAAQLRLRSDRLGVSENEIDILSTNSLEDVLQACEEEKPDYIILDSI 172 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + D+ S+ G+V QV+ L AK+RG+ +++VG VTKDG +AGPKVLEH +D Sbjct: 173 QTIASDDLNSAAGTVGQVKHVTYRLVELAKSRGITVMIVGQVTKDGYIAGPKVLEHLVDT 232 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD R LRS KNRFG NE+G+F MT++GL E+S S F+ + ++G Sbjct: 233 VLYFEGDYSRGVRILRSVKNRFGPTNEVGLFEMTDKGLLELS--SYSFVDDRADNSAGRV 290 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EGTR L+E+QALV + P+R +G + NRL +LLAVL + GG+ +A D++ Sbjct: 291 FVPVMEGTRAFLIEVQALVAPTFYQFPKRNCMGFDLNRLNMLLAVLEKKGGVNLAGSDIY 350 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV GG+K+TETSADLA+ A+VSS RDRP+ GEVGL G IRPV + R+SE+ Sbjct: 351 INVAGGMKITETSADLAICAAIVSSFRDRPIDPHSTFIGEVGLTGVIRPVSNMGSRLSES 410 Query: 420 AKHGFRRAIVP-AANVPKKAPEGMQI 444 K G R+ +P K G+ I Sbjct: 411 YKMGIRKYYLPEKVEFDKTIEIGLSI 436 >UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEX2_9BACT Length = 444 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 186/455 (40%), Positives = 287/455 (63%), Gaps = 13/455 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA F C ECG + +W G+C AC AW T+ E + + + + Sbjct: 1 MA----TIFFCTECGFETGKWSGKCPACGAWGTLKE-------STRVTGKNNKPVETLPL 49 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +K +++ D+ +E R TG KEFD VLGGG+V G ILIGG PG GKSTL+LQ + Sbjct: 50 SKPERIIDLEYDEFSRLLTGIKEFDLVLGGGIVKGMLILIGGEPGIGKSTLMLQLSEWMG 109 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 +Q KTLY +GEES +Q+ +R+ L + ++N+ +L + E I E+ +P L ++DSI Sbjct: 110 KQNKKTLYCSGEESAEQIRLRSKHLKVTSENIYLLCTNNAEHIIEAIEDNKPDLAIVDSI 169 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + + PG+V Q+RET + L R K G+ + +VGHVTK+G +AGPK++EH +D Sbjct: 170 QSVSIPSLDALPGTVTQLRETTSRLLRTVKNLGIPLFLVGHVTKEGLVAGPKIIEHMVDT 229 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ S+++ LR+ KNRFG+ NE+G+F MT GL EVSNP+ IFLS ++ G++ Sbjct: 230 VLYFEGEQRSQYKILRAVKNRFGSTNEIGLFEMTHLGLIEVSNPNNIFLSH-EQNNIGTA 288 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + + EG+R +VE+Q LV+ S P+RVAVGL+Q +LA+LLA+L ++ L + + DVF Sbjct: 289 ISCIMEGSRSFIVEVQTLVNASNYGTPQRVAVGLDQKKLAMLLAILEKNLSLYLRNCDVF 348 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VN+ GG++ T+ S DLA+L A++SS++D+PL + V GEVGL GE+RPV + IS+ Sbjct: 349 VNLTGGIRSTDPSLDLAILAALISSMKDQPLIEKAVFIGEVGLNGEVRPVSQLDKHISQT 408 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 K G+ + + + K P+ +++ +K L AL Sbjct: 409 LKLGYEKIFISSYAKVKANPKVVKVKDIKALYSAL 443 >UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus RepID=B5YF80_DICT6 Length = 457 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 183/459 (39%), Positives = 272/459 (59%), Gaps = 11/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+K K FVC CG + RW G+C C +WN+ E+ + R + Sbjct: 1 MSKV-KSKFVCQVCGYESVRWLGRCPNCQSWNSFIEIVEDKGKVDKRVNKEE-------- 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +V +L I E R TG FD ++GGG+V GS L+ G PG GKSTLLLQ L+ Sbjct: 52 LEVYRLDQILNYEPVRLKTGLTGFDYIIGGGIVEGSVTLLAGEPGIGKSTLLLQLAISLS 111 Query: 121 QQM-KTLYVTGEESLQQVAMRAHRLGLPTD-NLNMLSETSIEQICLIAEEEQPKLMVIDS 178 ++ + LY++ EESL QV +R RL +++ +SE IE I E+ L+++DS Sbjct: 112 KESSRVLYISAEESLSQVGLRLKRLTSKDRLDIDFVSERDIENILPELEKFNYSLIIVDS 171 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ ++ +SPG+V QVRE + L FAK VA+++VGHVTK+G +AGPK+LEH +D Sbjct: 172 IQTIYSSEFPTSPGNVVQVRECTSKLVDFAKKNNVAVILVGHVTKEGDIAGPKILEHLVD 231 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+G+ R LR KNRFG N+ ++ M E GL EV + SA + + +GS Sbjct: 232 VVLYLEGERYHDLRVLRVVKNRFGPTNDFILYEMKESGLFEVEDISAKMIENRNINVAGS 291 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ V EGT+PLL+E+QALV + + PRR+A G++ N+L +LLA+L + +D+DV Sbjct: 292 IIVPVMEGTKPLLIELQALVSKTNTSYPRRIASGVDFNKLVLLLAILEKKLRTNFSDKDV 351 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 FVNVVGG+K+ E + DL L A++S+L D+P P D++ GE+GL GE+R VP + R+ E Sbjct: 352 FVNVVGGIKINEPAVDLGLAFALLSALMDKPFPSDMIAVGEIGLGGEVRTVPHIERRLKE 411 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A K GF +A++P K M I V + + + + Sbjct: 412 ARKFGFIKALIPKDKKIKLNEYNMNILPVSDIEEGIKLV 450 >UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R3_GARVA Length = 495 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 178/494 (36%), Positives = 262/494 (53%), Gaps = 38/494 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLA-------------------- 40 MA ++C+ECG +W G+C C W T+ E R A Sbjct: 1 MASKSTLHYLCSECGWSGSKWYGRCPECGEWGTVNEFREARVSGLSRTTRTPRATTASRA 60 Query: 41 -ASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 + + + R ++ Q +S+I ++ R TGF EFDRVLGGG+VPGS L Sbjct: 61 YSPDSITTSNRNIAHSTLDSATSAQPISEIQADDAMRIHTGFSEFDRVLGGGLVPGSVTL 120 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 I G PG GKSTLLL+ +++Q K LY++GEES QV +RA R+ D L + Sbjct: 121 IAGEPGIGKSTLLLKAAAYVSKQSKESNTPPVLYISGEESAAQVKLRASRINAVNDYLLL 180 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 + ++ + + E P L ++DS Q + +V G QVRE A+ L AK + Sbjct: 181 ATTGDLDTVLDLIETHHPTLAIVDSAQTISAQEVDGITGGSTQVREVASALIDVAKANNI 240 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 I++VGHVTKDGS+AGP+ LEH +D +GD + R LR+ KNRFG +E+G F M+ Sbjct: 241 PILLVGHVTKDGSIAGPRTLEHLVDTVCQFEGDTQTALRMLRAVKNRFGPTDEVGCFDMS 300 Query: 274 EQGLREVSNPSAIFLSRGDEV----------TSGSSVMVVWEGTRPLLVEIQALVDHSMM 323 +G+ EV +PS +FLS + G+ V EG R L +EIQALV S + Sbjct: 301 GEGIEEVPDPSGLFLSSTENANQGKNAQDCTNDGTCVTFTLEGHRSLPIEIQALVTQSAL 360 Query: 324 ANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVS 383 PRR G++ NRLA+L AVL+RHG + + +D++V+ + G E S DLA++ A+ S Sbjct: 361 PTPRRAVSGVDSNRLAMLTAVLYRHGRVNLLAKDLYVSTIAGALAKEPSCDLAIVAALAS 420 Query: 384 SLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQ 443 + + + GE+ L G++RPVP + R+ EAA+ G++RAIV G++ Sbjct: 421 TAAGKAVTPKTCAIGEMSLTGQVRPVPRIEPRLREAARIGYKRAIV-CHMWKNVNIPGLE 479 Query: 444 IFGVKKLSDALSVF 457 I V + +AL Sbjct: 480 IIEVSTVREALKAL 493 >UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain protein n=1 Tax=uncultured marine microorganism HF4000_APKG7H23 RepID=B3T9S3_9ZZZZ Length = 459 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 202/459 (44%), Positives = 283/459 (61%), Gaps = 9/459 (1%) Query: 1 MAK--APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA 58 MA K ++C ECG PRW+G+C C+AW++ A+ P + Sbjct: 1 MASLAKAKTLYLCRECGHTSPRWEGRCPLCNAWDSY-----ASFPDSKAAHLPQSTRATT 55 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +KL + + PR S G E DR+LGGG VPGS +LI G PG GKSTLLLQ Sbjct: 56 TETTARKLREYEASDQPRVSVGLAEVDRLLGGGAVPGSLLLIAGEPGIGKSTLLLQMASH 115 Query: 119 LAQ-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 LA LY++GEES QV +RA RLG+ + ++ L+ET+ E+I E +P++ ++D Sbjct: 116 LAGTGAPVLYISGEESAAQVRLRAQRLGVSSAEVHFLAETNGERILNELEALRPEMAMVD 175 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ + V S+ GSVAQVRE L R+AK RG I + GHVTKDG++AGP+VLEH + Sbjct: 176 SIQTLSSDGVPSAAGSVAQVRECTQMLLRWAKERGCPIFLAGHVTKDGAIAGPRVLEHMV 235 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + L+G++ S +R LR KNRFGA N++ + M G+ EV +PSA+ L TSG Sbjct: 236 DVVISLEGESLSSYRLLRCTKNRFGATNDVALLEMRGDGMAEVPDPSAVLLGERQPGTSG 295 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S+V V EGTRPL+ E+QAL + S+ + PRR A G+E +R+ ++ AVL R GG+ + +QD Sbjct: 296 SAVTVTLEGTRPLMAEVQALTNPSLFSPPRRTANGMEFSRVMMIAAVLGRRGGVNLGNQD 355 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 + V+V GG+++ E +ADLA L++ SSLRD PL VV GEVGL GE+R VP + R+ Sbjct: 356 LIVSVAGGLRIREPAADLATALSIASSLRDIPLDSQAVVLGEVGLNGEVRSVPQLERRLV 415 Query: 418 EAAKHGFRRAIVPAAN-VPKKAPEGMQIFGVKKLSDALS 455 EA +HGF RA+VP N + + A M++ V + A+ Sbjct: 416 EAVRHGFTRALVPKNNALGELAAFEMEVVPVVSVQQAME 454 >UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKY5_9FIRM Length = 466 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 181/469 (38%), Positives = 270/469 (57%), Gaps = 17/469 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M K F+C+ CGA+ P+W G+C C WN++ E + P R Sbjct: 1 MNSKTKTKFICHNCGAETPKWMGKCPNCGEWNSLEEKIEESIPKSIRT------LSFQSG 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L+DI +++ R G E DR LGGG+V S IL GG PG GKSTL+LQ Sbjct: 55 KEPTSLTDIEIKDTDRVKLGITELDRPLGGGIVSDSVILWGGEPGIGKSTLILQICDSFT 114 Query: 121 QQMK-TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LY +GEES Q+ MRA RL + T+ + +E+++E I ++ P +++IDSI Sbjct: 115 KMGKTVLYCSGEESDIQIKMRAERLSVNTEECFVFAESNLETILAEVDKLHPDMVIIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+ GS Q+R+ A L + AK G+ ++++GHVTK+G++AGP++LEH +D Sbjct: 175 QTTYLPNSSSAMGSPTQIRDCTAILVKMAKESGIIVMIIGHVTKEGNIAGPRILEHMVDV 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR-GDEVTSGS 298 L+GD + +FR LR+ KNRFG+ +E G+F M +GL+ + +PS L + SGS Sbjct: 235 VFYLEGDRNYQFRVLRTVKNRFGSTSESGLFVMGRKGLKGIDDPSKYLLKGIQEAPVSGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V EG RP+L+E+QAL HS++A PRR+A G + NRL ILLAVL + G + + DV Sbjct: 295 TVAACMEGLRPILIEVQALTVHSVLAVPRRIASGYDFNRLVILLAVLEKKGKIPFSADDV 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++NV GG K+ ET+ADL++ LA+ S D PL + + GE+GL GEI PV R+ E Sbjct: 355 YLNVAGGYKLKETAADLSVALALFSVKYDIPLKKFCMALGEIGLTGEILPVSKLSLRLKE 414 Query: 419 AAKHGFRRAIVPAAN-------VPKKAPEGM--QIFGVKKLSDALSVFD 458 A K F ++PA N E + + + L +A+ F Sbjct: 415 AVKMNFTEFVLPARNQEEAENYFKDNHREELLSHVVFINHLEEAIHFFK 463 >UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriaceae RepID=C7NB45_LEPBD Length = 452 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 173/461 (37%), Positives = 280/461 (60%), Gaps = 12/461 (2%) Query: 1 MA-KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MA K K ++C+ECG +W G+C C +W T E S + Sbjct: 1 MAVKKGKTKYICSECGYSSLKWMGKCPNCDSWGTFEEEIDIKSTFKNVESQEVS------ 54 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 ++K+++I +E+ R T F+EFDRVLGGG++ G +LI G+PG GKST LLQ + Sbjct: 55 ---IKKITEIEIEKEFRMVTPFEEFDRVLGGGLIKGEVVLITGSPGIGKSTFLLQLSQEY 111 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 A+ YV+GEES +Q+ RA R+ + ++NL +L++T+IE+I + +E+PK++VIDSI Sbjct: 112 AKIGNVFYVSGEESPRQIKQRAERVNVKSENLYILNDTNIEKIESVILKEKPKVVVIDSI 171 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ +V S PGSV Q+RET + AK +A +VGHVTKDG LAGPK+LEH +D Sbjct: 172 QTLYSENVNSIPGSVTQIRETTLKIIEIAKKNEIAFYIVGHVTKDGKLAGPKLLEHMVDA 231 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + ++G+ +S FR +RS KNR+G+ NE+ +F M E G+ EV NPS F+S +E GS Sbjct: 232 VLQIEGEENSYFRIIRSIKNRYGSTNEISIFDMKENGISEVKNPSEFFISDREEKNVGSI 291 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 ++ ++EG+R L E+Q+L+ PRR G ++ R+ IL AVL R + + +D++ Sbjct: 292 IVPIFEGSRVFLFEVQSLLGTPNFGMPRRTVEGYDKTRVEILSAVLSRSLKVDVNSKDIY 351 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG+ + + S+DLA++ +++SS++ P+ Q + GE+GL GE+R V + R++E Sbjct: 352 INIPGGIDLNDRSSDLAVVFSLLSSIKGIPISQKIAAIGELGLRGEVRKVSFIKNRVTEL 411 Query: 420 AKHGFRRAIVPAANVP--KKAPEGMQIFGVKKLSDALSVFD 458 K GF +P ++ +K +++ + +S+ + Sbjct: 412 EKLGFAGVYLPKSHKADFEKEKTKIKLNYISNISELVERVK 452 >UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickettsiales RepID=RADA_RICBR Length = 448 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 184/432 (42%), Positives = 272/432 (62%), Gaps = 13/432 (3%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K+ ++C+ CG P+W GQC C W +I E ++ ++ +A+ + + Sbjct: 3 KEKKHYICSNCGNTSPKWSGQCFDCGVWGSIIEEKVISNKNIAKIGSKQDFEQLSS---- 58 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQ 122 ++ + R ST E DRVLGGG+V GSAILIGG+PG GKSTLLLQ A + Sbjct: 59 ------NVTDQVRISTPIGELDRVLGGGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASK 112 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ--PKLMVIDSIQ 180 +K LY+TGEESL Q+ +RA RL L D N+L+ ++E I E + L+VIDSIQ Sbjct: 113 VKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + ++ S PG+V+Q+R A L +AK + I++ HVTKDG LAGPK+LEH +D Sbjct: 173 TIATRELTSPPGTVSQIRTCAHELVNYAKQNNIIILLSCHVTKDGQLAGPKLLEHLVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD ++ FR LRS+KNRFG V E+GVF M+ GL EV+NPS +FL + ++ G+++ Sbjct: 233 LYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPSELFLMKREQNVIGTAI 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG+RPLL+E+QAL+ S M PRR AVG + NRL+++LAVL GL +A+ +V++ Sbjct: 293 FAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRIGLNLANYEVYL 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 ++ GG+K+ E ++DLA+ +++S+ ++PLP+ V FGE+ L+GEIR + RI EA Sbjct: 353 SIAGGLKINEPASDLAVAASLISAATNKPLPEHSVFFGEISLSGEIRKTAKAEARIKEAL 412 Query: 421 KHGFRRAIVPAA 432 K GF I + Sbjct: 413 KLGFNNIICSKS 424 >UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8K3_9FIRM Length = 469 Score = 532 bits (1371), Expect = e-150, Method: Composition-based stats. Identities = 182/461 (39%), Positives = 277/461 (60%), Gaps = 12/461 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K+ FVC+ECG + P++ G+C C WNT +E + L S KV Sbjct: 16 KDKKIFVCSECGYESPKYWGKCPDCGNWNTFSEFS-------KKELDLVNSKSSVFTPKV 68 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-Q 122 L D+ +E RF+T E D VLGGG+V S +L+GG PG GKSTLL+QT ++ Sbjct: 69 TNLKDVDTKEDMRFTTSISELDNVLGGGIVASSLVLVGGEPGIGKSTLLMQTAHNVSMIG 128 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 + LY + EESL Q+ +R RL L ++ +LS T IEQI A+E + L++IDSIQ + Sbjct: 129 KRVLYASSEESLSQLKLRLDRLDLKGSDILVLSNTDIEQIIESAKENKADLLIIDSIQTV 188 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 A++ S+PG++ QVRE L FAK ++ +VGH+TK G++AGPK +EH +D + Sbjct: 189 RSANIPSAPGTITQVRECTNLLMNFAKATNTSVFIVGHITKQGTIAGPKTIEHMVDTVMY 248 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 + +++S R LR KNRFG+ E+GVF MT +GL V+NPS + L + + GS + Sbjct: 249 FESESNSSLRILRLSKNRFGSSEEIGVFEMTRKGLECVTNPSKLLLEDRENRSYGSVICS 308 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 + EG R +L+EIQAL S PRRV+ G E NR +LAV+ + +++ DV++NV Sbjct: 309 IMEGNRSVLIEIQALAMMSSFQVPRRVSTGFEYNRFVQILAVIEKMTNVKIHSTDVYLNV 368 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 VGGV+V ET++DLA+ A++SS+ + +P + ++ GEVGL GEIR + + +RI EA Sbjct: 369 VGGVRVKETASDLAVACAVISSMLKKEIPINTIIIGEVGLCGEIRKINNIFKRIKEANSL 428 Query: 423 GFRRAIVPAANVPKKAPE---GMQIFGVKKLSD-ALSVFDD 459 GF++AI+P ++ + ++I + L + +F++ Sbjct: 429 GFKKAIIPRNSLDEHEDISNLNIEIIEISTLKECVFKLFNN 469 >UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus marinus RepID=A8G2D8_PROM2 Length = 453 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 173/457 (37%), Positives = 279/457 (61%), Gaps = 11/457 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+ F+C CG++ ++ G+C C++WN+I E + + Sbjct: 1 MSSKLST-FICQNCGSETSQYFGRCLNCNSWNSIVEEI------KIKRSKYQDLKDIKNS 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++IS +++ RF++GFKE DRVLGGG+VPGS +L+GG PG GKST++LQ+ K++ Sbjct: 54 KKSIPFNEISSKKISRFTSGFKEIDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKIS 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LYVT EESL+QV +R RL ++ L + +ET++ I + P +IDSIQ Sbjct: 114 LNEKVLYVTAEESLEQVKIRWERLNQDSNELKIFAETNLSLIMEEIKSVNPSFAIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 +H +++SSPGSV+QVR ++ L AK ++++++GHVTKDG+LAGPK LEH +D Sbjct: 174 AIHNHEMESSPGSVSQVRACSSELQNLAKNNNISLLIIGHVTKDGALAGPKTLEHLVDVV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD S R LRS KNRFG+ E+G+F M E+GL EV NPS+IF ++ E SG + Sbjct: 234 INFEGDKVSSHRLLRSIKNRFGSTFEIGIFEMLEKGLVEVKNPSSIFTNK--ENISGVTT 291 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EG+RP V+IQALV+ + +NPRR G+ NRL +LAV+ +H G+++++ D ++ Sbjct: 292 TITNEGSRPFAVDIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYI 351 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GG ++ + S+DL + ++++SSL++ P GE+GL+G++R + + +I EA Sbjct: 352 ATGGGFEINDPSSDLGVAISILSSLKNLPPLASTSFIGELGLSGQVRKSNNLRTKIEEAV 411 Query: 421 KHGFRRAIVPA--ANVPKKAPEGMQIFGVKKLSDALS 455 + G + +VP + + I + + +A+ Sbjct: 412 RMGIKNIVVPKLEEELNNNFQNLINIKEISNIKEAVD 448 >UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae RepID=D1ALG8_SEBTE Length = 450 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 173/461 (37%), Positives = 281/461 (60%), Gaps = 13/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA K ++C+ECG +W G+C C +W T E + + + SA Sbjct: 1 MA--SKSGYICSECGYTSKKWLGKCPNCESWGTFEEEV---------DIKKTLSKISAED 49 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL +I L + R T F EFDRVLGGG+V G +LI GNPG GKST LLQ + + + Sbjct: 50 VEIVKLEEIELGKEFRMVTKFSEFDRVLGGGLVKGEVVLISGNPGIGKSTFLLQLIDEYS 109 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + Y++GEESL+Q+ RA RLG+ + +L + +ET++E+I I ++ PK++VIDSIQ Sbjct: 110 KTGNVFYISGEESLRQIKQRADRLGVKSKSLYLANETNLEKIESIILKDNPKIVVIDSIQ 169 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ +V S PGS+ Q+RET + AK+R ++ +VGH+TKDG +AGPK+LEH +D Sbjct: 170 TLYSENVNSIPGSMTQIRETTLKIIEMAKSREISFFIVGHITKDGKVAGPKMLEHMVDAV 229 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + ++G+ +S +R +R+ KNRFG+ NE+ +F M E G+ E++NPS F+ +E GS + Sbjct: 230 IQIEGEENSFYRIIRTLKNRFGSTNEISIFDMKEDGISEITNPSEFFIGEREEKNVGSII 289 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EG+R L E+Q+L+ ++ PRR+ G ++NR+ IL AVL + L ++ +D+F+ Sbjct: 290 TPILEGSRVFLFEVQSLLTNTTFGLPRRIIEGYDKNRVEILGAVLSKFLKLDLSSKDIFI 349 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N+ GG+ + + S+DLA++ +++SS+ + Q + GE+GL GEIR V + RI E Sbjct: 350 NIPGGLTLKDRSSDLAVIFSLISSINALAVSQKIAAVGELGLRGEIRRVAFIKNRIKELE 409 Query: 421 KHGFRRAIVPAANVPKKAPEG--MQIFGVKKLSDALSVFDD 459 + GF+ +P AN E +++ +K + + + Sbjct: 410 RLGFKGVYLPTANKKDLESEDFKIKLIYLKNIEELIERVKK 450 >UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickettsia RepID=RADA_RICFE Length = 446 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 190/458 (41%), Positives = 276/458 (60%), Gaps = 19/458 (4%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K+ ++C+ CG P+W GQC C W +I E ++ + + + + Sbjct: 3 KDKKHYICSNCGNTSPKWSGQCFDCGVWGSIVEEIVSTNKAIVKTGSKQDF--------- 53 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC-KLAQQ 122 KLS E+L R T E +RVLGGG+V GSAILIGG+PG GKSTLLLQ A + Sbjct: 54 DKLSGHVAEQL-RIPTPIGELNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFASK 112 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ--PKLMVIDSIQ 180 M LY+TGEESL Q+ +RA RL L N ++L+ T++E I E + L+VIDSIQ Sbjct: 113 MNCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNIDLVVIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + ++ S PG+V+Q+R A L +AK + I++ HVTKDG LAGPK+LEH +D Sbjct: 173 TITTKELSSPPGTVSQIRICANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD ++ FR LRS+KNRFG V E+GVF M GL EV+NPS +FL + ++ G+S+ Sbjct: 233 LYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMCGSGLIEVTNPSELFLMKREQNVIGTSI 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG+RPLL+E+QAL+ S M PRR AVG + NRL+++LAVL GL +A+ +V++ Sbjct: 293 FAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDANRLSMILAVLSSRIGLNLANYEVYL 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 ++ GG+K+ + ++DLA+ +++S+ +P+P+ V FGE+ L+GEIR + RI EA Sbjct: 353 SIAGGLKIADPASDLAVAASLISAATGKPVPEHSVFFGEISLSGEIRKTAKAETRIKEAV 412 Query: 421 KHGFRRAIVPA-ANVPKKAPEGMQIFGVKKLSDALSVF 457 K GF + I N+ I V L D + Sbjct: 413 KLGFNKIICSKLENLTYDF-----ISSVSHLKDLKEII 445 >UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteria RepID=RADA_CHLMU Length = 455 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 187/458 (40%), Positives = 277/458 (60%), Gaps = 12/458 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K + C+ECG+ P+W GQC C WNT+ E + +L + Sbjct: 5 KIKTQWACSECGSYSPKWLGQCPGCFQWNTLVEEI--------HSSKLKTSSYPLSSTTP 56 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 L+ + +E R ST K ++R+LGGG V GS L+GG PG GKSTLLLQ + A Q Sbjct: 57 VPLNTVKFQEEIRISTRSKGWNRLLGGGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQG 116 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 K LYV GEES+ Q ++RA RL + + N+ + ET++E I + P +++IDSIQ++ Sbjct: 117 YKVLYVCGEESVSQTSLRAQRLQISSSNIFLFPETNLEDIKQQISDLAPDILIIDSIQII 176 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + S+PGSVAQVRET A L AK + + ++GHVTK G +AGP++LEH +D + Sbjct: 177 FSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLY 236 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +G+A + +R +RS KNRFG NEL + +M GL EV NPS FL T+GS+++ Sbjct: 237 FEGNAHTNYRMIRSVKNRFGPTNELLILSMQTDGLHEVENPSGFFLQEKVVETTGSTIIP 296 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 + EG+ LLVE+QALV S +NP R G + NR ++LLAVL + +++ DVF+++ Sbjct: 297 IVEGSETLLVEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSI 356 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GG+K+T+ SADL +L++VSSL +R LP++ GE+GL GEIR V + RI E+ Sbjct: 357 AGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIRHVTHIEHRIKESIIM 416 Query: 423 GFRRAIVPAA---NVPKKAPEGMQIFGVKKLSDALSVF 457 GF+ ++P+ +PK+ + + I GVK + DA+ + Sbjct: 417 GFKGIVMPSGQIKGLPKEYLDQIDIIGVKTIKDAVRLL 454 >UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C1A917_GEMAT Length = 465 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 209/461 (45%), Positives = 291/461 (63%), Gaps = 10/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + + C +CGA++P+W G+C +C AWNT+ E +A ++R + A Sbjct: 1 MAK-TRTVYRCTDCGAEFPKWAGRCESCSAWNTLVEEVVAP---TTTSKRTAARAAGGVA 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL- 119 + L ++ + PR+ TG EFD VLGGG+VPGS +L+GG PG GKSTLLLQ +L Sbjct: 57 GRTVTLGSVTSSDTPRWRTGLDEFDFVLGGGIVPGSMVLVGGEPGIGKSTLLLQVAARLE 116 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEE-----EQPKLM 174 A TLYV+GEES QV +RA RL +++L+ETS+E I A + + + Sbjct: 117 AAGQATLYVSGEESALQVRLRAERLAEDASAVSLLTETSLETILATAAQPTGDGRPVRAL 176 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 ++DSIQ +H ++ +PG+V QVRE AA L RFAK G + ++GHVTK G +AGPK LE Sbjct: 177 IVDSIQTVHTELLEGAPGNVGQVRECAARLMRFAKDSGTTVFVIGHVTKGGGIAGPKTLE 236 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +GD+ R LR+ KNRFG+V+E+GVF M GL V NPSA+F+ EV Sbjct: 237 HIVDTVLYFEGDSTLDHRVLRATKNRFGSVDEIGVFRMVSTGLIPVDNPSALFVGDRREV 296 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 SGS+V + EGTRP+LVE+QAL + P+RVA G++ RLA+LLAVL + GG A Sbjct: 297 ASGSAVCALMEGTRPVLVEVQALAAKAGFGTPQRVANGIDARRLALLLAVLDKRGGFSCA 356 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DVF NVVGG++V E S DLA++ A+ SS+ D+PLP V GE+GL GE+RPV + Sbjct: 357 QLDVFCNVVGGMRVQEPSVDLAVVAALASSVVDKPLPSHAVFLGELGLGGEVRPVSQAER 416 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 R++EAAK G A + +P++ P + + GV+ L D L Sbjct: 417 RLAEAAKLGMTTAFMSDRAIPRRVPGDITVIGVRTLVDVLQ 457 >UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX97_9BACT Length = 478 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 207/468 (44%), Positives = 285/468 (60%), Gaps = 15/468 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGY----AG 56 MAK + ++ C CG P+W G C ACH E P + R+ Y AG Sbjct: 1 MAKKDQESYRCPACGYRSPKWMGFCPACH------EAPEGLVPEESPGGRVERYVREAAG 54 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 A ++ +S + + +LPR STG EFDRVLGGG+VPGS IL+GG+PG GKSTL+LQT+ Sbjct: 55 GAAESRALPISGVVVGDLPRSSTGLSEFDRVLGGGIVPGSFILLGGDPGIGKSTLVLQTV 114 Query: 117 CKLAQQMKTLYVTGEESLQQVAMRAHRL---GLPTDNLNMLSETSIEQICLIAEEEQPKL 173 LA++ L V GEES +Q+ MR RL T L +L ET + + A P + Sbjct: 115 ANLAREKTVLVVCGEESPEQIRMRFDRLEAGKKKTSGLFLLPETDLSLVLAEAARLSPDI 174 Query: 174 MVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL 233 +++DSIQ + + + S GSV Q+RETAA L FAK V +++GHVTKDG++AGP+VL Sbjct: 175 LIVDSIQTVFLPEWTQSAGSVIQLRETAATLLEFAKRSRVTTLVIGHVTKDGTIAGPRVL 234 Query: 234 EHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE 293 EH +D + L+G+ R LR+ KNRFG E+G+F M E GL EV+NPSA FL D Sbjct: 235 EHLVDTVLYLEGERGQPLRILRTAKNRFGPTQEVGLFEMEEGGLVEVTNPSAFFLEGRDP 294 Query: 294 VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM 353 GS+V+ EG+RP+LVE+QAL + + PRRV G+ NRLA+L AVL R GL + Sbjct: 295 GRPGSTVVCGMEGSRPILVELQALAAPTSLPMPRRVTQGVSSNRLALLTAVLVRRIGLDL 354 Query: 354 ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 + D+++NVVGGV++ ET+ DL + L +VSS+R+ LP VV GEVGLAGE+R +P Sbjct: 355 SGMDLYLNVVGGVEIEETALDLGIALGVVSSVRELILPAGWVVVGEVGLAGEVRRIPGII 414 Query: 414 ERISEAAKHGFRRAIVP--AANVPKKAPEGMQIFGVKKLSDALSVFDD 459 ER++EAA+ GF + P + + P G+ V L AL+ + Sbjct: 415 ERMAEAARLGFSHMVGPVLPSGKSRPLPRGIVYHPVSDLRQALAFLEK 462 >UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BB82_SANKS Length = 473 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 195/448 (43%), Positives = 278/448 (62%), Gaps = 9/448 (2%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 + C ECG +W G+C C W ++TE AAS + A + VA Q + + Sbjct: 20 YRCTECGWTTSKWVGRCGECQEWGSVTEAAAAAS-----GPKTVASAPTRSVA--QPIGE 72 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLY 127 I ++ TG EFDRVLGGG+VPG+ +L+ G PG GKSTLLL A+ + LY Sbjct: 73 IDVDSAQAAPTGISEFDRVLGGGIVPGAVVLLAGEPGVGKSTLLLDVASTTARAGRRVLY 132 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 +TGEES QV +RA R+ L + +ET + Q+ E P L+++DS+Q + A V Sbjct: 133 ITGEESAGQVRLRAERIDALAPTLLLAAETDLGQVLGQIEATDPDLLIVDSVQTVASAQV 192 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 SPG V QVRE A+ L AK R + +V+VGHVTKDG++AGP+ LEH +D + +GD Sbjct: 193 DGSPGGVGQVREVASALIAAAKGRNMPVVLVGHVTKDGAVAGPRTLEHLVDVVLQFEGDR 252 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 SR R +R+ KNR+G +E+G F +TE G+ +++PS +FLS + G+ V V EG Sbjct: 253 HSRLRMVRAVKNRYGPTDEVGCFELTEDGIAGLADPSGLFLSHINLAVPGTCVTVTLEGR 312 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 RPL +EIQ+LV S +ANPRR G++ +RLA++LAV+HRH G ++ D DV+V+ +GG + Sbjct: 313 RPLALEIQSLVVASPLANPRRTTSGIDSSRLAMILAVIHRHLGARLTDADVYVSTIGGAR 372 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 VTE +ADLA+ LA +S+L ++P+P + GEVGLAGE+R V R+SEAA+ GF RA Sbjct: 373 VTEPAADLAIALATLSALENKPVPVGTIAIGEVGLAGELRAVSGISRRLSEAARLGFTRA 432 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDALS 455 +VP AP GM + L++A+ Sbjct: 433 VVPPG-TSGPAPAGMTLLPAANLAEAVQ 459 >UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L030_THERP Length = 470 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 200/453 (44%), Positives = 295/453 (65%), Gaps = 9/453 (1%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 + +VC CG + + G+C +C AW T+ E + A+P + A VQ+ Sbjct: 9 RTVWVCQSCGLESSGYYGRCPSCGAWGTMVEQAVDATPATGDAKGTG--------APVQE 60 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQQMK 124 LS ++ E R S EFDRVLGGG+VPG+ +L+GG+PG GKSTLLLQ +L ++ ++ Sbjct: 61 LSRVTSAERTRLSLRSPEFDRVLGGGLVPGALVLLGGDPGIGKSTLLLQAALRLASEGLR 120 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 LYV EES +Q+ +RA RLG +D + +L+ET++++ IA+E P ++++DSIQ + + Sbjct: 121 VLYVAAEESPEQIRLRADRLGKTSDGVLILAETALDRAIEIAQELDPAILIVDSIQTVFL 180 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 + +SSPGSV+QVR+ A L +FAK + +VGHVTK+G +AGP+V+EH +D + L+ Sbjct: 181 SSSESSPGSVSQVRDCTAQLLQFAKRARTPVFLVGHVTKEGLIAGPRVVEHMVDVVLYLE 240 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 G+ + R LR+ KNRFG+ NE+GVF MT+ GL +VSNPSA+FL+ +GS+V+V Sbjct: 241 GERFHQHRLLRAAKNRFGSTNEIGVFEMTDSGLLDVSNPSALFLAERASHAAGSAVVVTL 300 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EGTRP+L+E+QAL + PRR+A G + RL +L+AVL +H GL++ +QDVFVNV G Sbjct: 301 EGTRPILIEVQALTSSAGYGTPRRIATGFDATRLQVLVAVLSKHAGLKLGEQDVFVNVTG 360 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G ++ E +ADL + LA+ SS PL D V GE+GLAGE+R V + R+ EAA+ GF Sbjct: 361 GYRLVEPAADLGVALAIASSASGLPLDDDAVFIGELGLAGEVRSVHGLERRLQEAARLGF 420 Query: 425 RRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 R A VPA+ G++I V ++ A+S Sbjct: 421 RSAYVPASARISSPVSGLRIVAVGSIAQAVSSL 453 >UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A7NKT5_ROSCS Length = 464 Score = 525 bits (1354), Expect = e-148, Method: Composition-based stats. Identities = 196/453 (43%), Positives = 279/453 (61%), Gaps = 7/453 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + FVC +CG+ RW G+C C W+++ E SG+ G + Sbjct: 3 KVRTVFVCQQCGSQQSRWMGRCPDCGTWDSLVEQTERRDAASRSRAITSGFQG-----RP 57 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ- 122 L D+++ R +EF VLGGG+VPGS +LIGG PG GKS+LLLQ A Sbjct: 58 VGLRDVAIGGFTRLPVLGREFVGVLGGGLVPGSVVLIGGEPGIGKSSLLLQVAAHFADHV 117 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 LYV+ EES+QQ+ +RA R+GL + L + SET++ I +P+L+V+DSIQ + Sbjct: 118 GPALYVSAEESVQQIKLRAARMGLEPERLLVYSETNLNAILDQVAAIKPQLVVVDSIQTV 177 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ ++ S+ GSV+QVRE A L R AK + + +VGHVTK+G++AGP+VLEH +D + Sbjct: 178 YLEELSSAAGSVSQVREGALRLLRVAKEHAIPMFLVGHVTKEGAIAGPRVLEHIVDVVLY 237 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 L+GD ++R LR KNRFG+ +E+GVF MT GLREV NPS FLS GS+V V Sbjct: 238 LEGDRFHQYRLLRGVKNRFGSTDEVGVFEMTAHGLREVPNPSQAFLSERTVNAPGSAVAV 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTRP+LVE+QAL HS A PRR A G + NRL +L+AVL + GL + +QDV+VN+ Sbjct: 298 TMEGTRPILVEVQALTAHSAGAQPRRTANGFDMNRLLMLVAVLTKRVGLPLFNQDVYVNI 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 VGG+++ E + DLA+ +A+ SS R+ + QDL + GEVGLAGE+R + R++EA+ Sbjct: 358 VGGLRIDEPAVDLAVAVAIASSFRNMRVRQDLAMVGEVGLAGELRSAGQLERRLTEASGL 417 Query: 423 GFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 GF A+ P EG+ + + L+DA+ Sbjct: 418 GFTCALCPET-AHLPCIEGLGVITARALADAIE 449 >UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD3_ELUMP Length = 454 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 181/455 (39%), Positives = 273/455 (60%), Gaps = 10/455 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K FVC CG P+W GQC C WNT+ E AA A + ++ +++ Sbjct: 2 KLKTVFVCQSCGFKAPKWTGQCPDCSEWNTMVEEVEAAPSKTA----SKSKSFTSFSSEI 57 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 LSD R TG E DR+LGGG+V G IL+ G PG GKSTL+LQT L++ Sbjct: 58 INLSDTKTLREERELTGISELDRLLGGGIVKGQLILLAGAPGIGKSTLMLQTAASLSKGK 117 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 K LY++GEESL Q++ RA RLG+ N+ +LSET+++ I ++ +P++++IDSIQ ++ Sbjct: 118 KVLYISGEESLNQISSRALRLGVEGKNIFLLSETNMQNIIEALDKVKPEVLIIDSIQTVY 177 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 + SSPG++ QVRE AA L R K +G + ++GHVTKDG LAGPKVLEH +D + Sbjct: 178 HPEFSSSPGTIGQVRECAAELLRLCKPKGTVLFILGHVTKDGELAGPKVLEHMVDTVLYF 237 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR-GDEVTSGSSVMV 302 D + D+ R LR HKNRFG+ +E+G+F MT GL V + S F ++ G + + Sbjct: 238 DTEKDNILRLLRPHKNRFGSTHEIGLFQMTGHGLTPVEDASVYFAGNSRNKPLIGRAYSI 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTRP+L E+QALV + PRRV+ G++ NR +LLA + ++ G+ + ++D+++++ Sbjct: 298 ALEGTRPILTEVQALVVPTRYPFPRRVSTGIDLNRCQVLLASIEKNAGISLENKDIYISL 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGVK+ + + DLAL A++SS++D P+ V EVG+ G + VP RI+EA + Sbjct: 358 AGGVKIKDPALDLALSAAVISSVKDIPISNTDVFLAEVGILGPLAKVPLADRRIAEAGRL 417 Query: 423 GFRRA---IVPAANVPKKAPEGMQIFGVKKLSDAL 454 GF+R I+ P Q+ ++ ++D + Sbjct: 418 GFKRVFTSIISKNEEPSDNKT--QVLQLESIADLV 450 >UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae RepID=B4SGR3_PELPB Length = 457 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 198/462 (42%), Positives = 287/462 (62%), Gaps = 12/462 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA++ ++C+ CGA ++QG+C C +W T+ E R+ R+ + GV Sbjct: 1 MARSS-TRYICSNCGAISLKYQGKCFECQSWGTLQESRVEPEQKKQRD------GSTRGV 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A ++ L D E R TG E DRVLGGG++ GSA+L+GG PG GKSTL+LQ +LA Sbjct: 54 AVMENLHDSVPSEFQRVMTGIGELDRVLGGGLMQGSAVLVGGEPGIGKSTLMLQLAPRLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LY++GEES Q+ RA RL + NL ++ E ++E I I E+P L++IDSIQ Sbjct: 114 P-AKVLYISGEESPNQIRERAQRLSIKAPNLWLIPEVNLESILAIIAHEKPALVIIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 +H + QSS G++ Q+RE AA L R AK + V ++++GH+TK+G+LAGPK LEH +D Sbjct: 173 TVHSDEYQSSAGTITQIRECAATLIRAAKQQNVILMIIGHITKEGALAGPKALEHMVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ R+R +RS KNRFG+ NE+GVF M E GL EVSNPS F+S G+S+ Sbjct: 233 LQFEGEGYQRYRIIRSVKNRFGSTNEIGVFRMDESGLEEVSNPSEFFISGRRTDVPGNSI 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EGTR LLVE+QALV + + P+R++ G + R++I+LAVL ++ QDVFV Sbjct: 293 LAAIEGTRALLVEVQALVSKTNYSMPQRISTGFDLKRMSIILAVLENRLRIETWGQDVFV 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 + GG+K+ E +ADLA+ A+ S L +RP+ V GE+GLAGE+R + + RI EAA Sbjct: 353 KIAGGLKLAEPAADLAIAAAIASGLMNRPVDPATVCCGEIGLAGELRAISDSERRIREAA 412 Query: 421 KHGFRRAIVPAANVPKKAPE----GMQIFGVKKLSDALSVFD 458 GF++ ++P AN + P + I G K L +AL + Sbjct: 413 HLGFKQIVLPEANTRELKPSLKNLPIIITGCKTLQNALDELN 454 >UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum sp. Group II RepID=A3EUB1_9BACT Length = 461 Score = 519 bits (1337), Expect = e-146, Method: Composition-based stats. Identities = 202/462 (43%), Positives = 280/462 (60%), Gaps = 8/462 (1%) Query: 1 MAKAPKR-AFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA- 58 M K ++ C CG +W G C +C E P+V+ + RL Sbjct: 1 MKKKSVPDSYECPACGYRSAKWMGFCPSCQ------EAPEGLVPVVSASSRLESLLSEGD 54 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 G + ++ D+ + R S+GF+EFDRVLGGG V GS IL+GG+PG GKSTL LQ + Sbjct: 55 GTPRALRMEDVGKVAVERTSSGFREFDRVLGGGFVRGSFILLGGDPGVGKSTLALQAVAH 114 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 +A K LY GEES +QV MR RLG +L +L ET +E I + P+ +V+DS Sbjct: 115 MANGHKVLYAAGEESPEQVRMRYDRLGRKGGDLFILPETDLEAIVREVKRLSPEFLVVDS 174 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ + M S GSV +RE+A+ L AK V +++VGHVTK+G +AGP+VLEH +D Sbjct: 175 IQTVTMGADGPSSGSVGLLRESASVLLELAKRASVTVLIVGHVTKEGVIAGPRVLEHLVD 234 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+GD R LR+ KNRFG ELG+F M+ GLREV N S+ FL E SGS Sbjct: 235 TVLYLEGDRSHPVRLLRTVKNRFGPTRELGIFEMSPDGLREVENASSFFLEGRKERLSGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 V+ EGTRPLLVE+Q+LV + NPRRVA G+ +RL+IL AVL R GL ++ +D+ Sbjct: 295 VVVSSLEGTRPLLVELQSLVSPTTFPNPRRVAQGVPVSRLSILAAVLERRAGLSLSSRDI 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +VNV GGV + ET++DL L+L++ SL+D L D+VVFGEVGL GE+R V + R++E Sbjct: 355 YVNVAGGVSLEETASDLGLVLSLAGSLKDISLSPDVVVFGEVGLGGEVRRVQEMESRLTE 414 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 A +HGF A++PA+ G+ + V+++ +AL + L Sbjct: 415 ARRHGFSHAVLPASGKKYPDVSGLSLHPVREVGEALELLKKL 456 >UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID=Q04QR6_LEPBJ Length = 459 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 186/459 (40%), Positives = 268/459 (58%), Gaps = 6/459 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M K R F+C CG DY RW G+C +C WN+I E + Sbjct: 1 MKKRLTRTFICQSCGQDYSRWAGKCESCGNWNSIVEEIGGERFAPSGGNSRKN----KSY 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + E L R TG KE D VLGGG+VPGS LIGG PG GKSTL+L+ L Sbjct: 57 QEPIPLDRVEEESLERMGTGLKELDLVLGGGLVPGSLTLIGGEPGVGKSTLVLEVSRYLT 116 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 Q K LY++GEES Q+ MRA R+G + NL + SET E I + E +P + +DSI Sbjct: 117 QANKKVLYISGEESPSQIRMRAERMGFRSSNLLLTSETYAENISAMIEGARPTAVFVDSI 176 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + G+V Q+RE L AK G+ I+M GH+TK+G++AGPK+LEH +D Sbjct: 177 QTIAREALPNQAGTVTQLRECTQILLETAKRSGIPILMTGHITKEGTIAGPKILEHLVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD + +R LR+ KNRFGAV +L +F M GLREV + ++IF+S G E SGS Sbjct: 237 VLYFEGDRLNYYRLLRAVKNRFGAVGDLAIFEMFSGGLREVGDRNSIFVSAGAEERSGSV 296 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG+R L VE+QALV + A RR+A G + R+ +L AV+ ++ +++ + D+F Sbjct: 297 ISAVLEGSRALTVEVQALVSKTGFAQARRMAEGPDTRRVILLAAVIEKYIKIKLGECDLF 356 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 N+ GG+ E + DLA+ +++SS D+PLP+ V GEVGL+GE+R + RI E Sbjct: 357 SNLAGGLNADEPALDLAICTSIISSYLDQPLPKGTCVLGEVGLSGEVRSIGQANLRIKEL 416 Query: 420 AKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDALSVF 457 A G ++ I+P N+ + +QI G++ L+D +F Sbjct: 417 AGVGMKKVILPEGNLSELVQNTDIQIQGIRSLNDLRLLF 455 >UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales RepID=B9KHP2_ANAMF Length = 456 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 179/459 (38%), Positives = 274/459 (59%), Gaps = 10/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M + K + C CG RW G+C AC AW++I E + AR ++ Sbjct: 5 MWVSTKVIYACQTCGNSSHRWTGRCVACGAWDSIVEEVAPKNKHTARTQQKE-------P 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 V + S+E + R G E DRVLGGG+V GS+ILIGG PG GKSTL+LQ LA Sbjct: 58 PLVMPICGSSVEPVHRLCVGNDELDRVLGGGIVAGSSILIGGEPGIGKSTLMLQVFASLA 117 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 Q LYV+GEES+ Q+ RA RL + + +++ +S+ + A + +VIDSI Sbjct: 118 GQSHSCLYVSGEESVAQIRARATRLNVSEPQIKLVATSSLSSVLNAACADNFAFLVIDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q MH ++ SSPG+V QVR A L AK R + + ++G +TKDG++AGPK LEH +D Sbjct: 178 QTMHDEEIPSSPGTVLQVRMCAHKLIMLAKQRNIGLFLLGQITKDGAIAGPKTLEHLVDT 237 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE-VTSGS 298 + +G ++ R LR+ KNRFG NE+GVF M+ GL V +PS +FL + +G+ Sbjct: 238 VLYFEGSNGNQLRILRTIKNRFGPANEMGVFEMSGSGLLPVQDPSMLFLGQSPRKGITGN 297 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 V EG+RP+LVE+Q+L+ ++ +PRR VG + NRLA+++AVL+ + +AD++V Sbjct: 298 VVFAGMEGSRPILVEVQSLIANTYSPSPRRAVVGWDINRLAMVVAVLNARCDMPLADKEV 357 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++++ GG+K+ E ++DLA+ +++SS+ P P V+FGEV L+GEIR V + R+ E Sbjct: 358 YLSIAGGLKICEPASDLAIAASLMSSITRSPTPASTVIFGEVALSGEIRSVANVGPRLRE 417 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A K GF++AI P+ + + +++ V + + +F Sbjct: 418 ACKLGFKQAIAPSGSKKGNSLP-IEVREVAHIRELKGLF 455 >UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD6_9BACT Length = 440 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 186/453 (41%), Positives = 269/453 (59%), Gaps = 20/453 (4%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K + C CG +W GQC C+ WN+ E + + +++ + + + V Sbjct: 3 KFKTVYTCKNCGYTSYQWIGQCPNCNEWNSFVEDVI----SLKESKKTESSSSKSHIEPV 58 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 + S S R S+G EFDRVLGGG VPG +L+ G PG GKST+L + L + + Sbjct: 59 KLSSVSSSVPPRRVSSGIGEFDRVLGGGFVPGQVVLLAGEPGIGKSTILTEIAKNL-KDL 117 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMVIDSIQVM 182 K LYV GEES+ Q+ +R R+G +NL +L ET+++ I +E++ L+++DS+Q + Sbjct: 118 KVLYVCGEESVDQIKIRVSRMGYNAENLLVLPETNVDIIVDNIDEKKEIGLVIVDSVQTL 177 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ SPGS+ QVR + LT AK + IV+VGHVTK G +AGPKVLEH +D + Sbjct: 178 FSEELLGSPGSLVQVRGCSQILTNTAKKTNIPIVLVGHVTKGGVVAGPKVLEHIVDTILY 237 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 L+GD+ FR LR+ KNRFGAV+E+G+F M + G+REV NPS +FL + + GS V V Sbjct: 238 LEGDSQHLFRILRTSKNRFGAVSEVGIFEMVDNGIREVKNPSELFLKQRLLKSPGSCVTV 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 V EG RPLL EIQAL + PRR + G RL +L+AVL + GL + + DV+VNV Sbjct: 298 VMEGNRPLLFEIQALTVPTSFGYPRRTSSGFSNTRLQVLIAVLEKRAGLSLNNYDVYVNV 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GG KV+E + DLA+ LA+ SSL ++P+ +D+ FGE GL GE+R V +R+ EA K Sbjct: 358 AGGFKVSEYATDLAVCLAIASSLINKPIKEDVAAFGECGLNGELRQVTYQDKRMEEARKM 417 Query: 423 GFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 G+ + I + VK +S+A+ Sbjct: 418 GYEKIISSDS--------------VKNISEAIK 436 >UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilonproteobacteria RepID=RADA_HELPJ Length = 448 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 179/453 (39%), Positives = 267/453 (58%), Gaps = 8/453 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK F C CG P+W G+C C+AW + E+ ++ ++ V Sbjct: 1 MAKKT-SLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNALKK-----PLPQV 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K +++I EE+ +FS+ E D VLGGG+ G L+GG+PG GKSTLLL+ LA Sbjct: 55 QKSVSIAEIEHEEVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLA 114 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + Q K LYV+GEESL Q+ MRA RL + L +L+E + I E E VIDSI Sbjct: 115 KNQQKVLYVSGEESLSQIKMRATRLDCIEEELYLLNEINWPVIKANMESENYFACVIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ ++ S+PGS++QVRE L R AKTR +AI ++GH+TK+GS+AGP+VLEH +D Sbjct: 175 QTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDS 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD R LRS KNRFG +E+G+F M EQGL S++F S+ +E GS+ Sbjct: 235 VLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSK-EEPMEGSA 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + + EG+R L++EIQALV P+R+A G + NRL +L+A+L + + + DVF Sbjct: 294 ITITLEGSRALILEIQALVSECSFGAPKRLANGFDTNRLNMLIALLEKKLEIPLNRHDVF 353 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV GG+K++E + DLA++ +++SS ++R + GEV L G I P+ R+ E Sbjct: 354 INVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRILEAPNLNARLKEM 413 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSD 452 +GF +AI+P K + + + V K+ + Sbjct: 414 ENYGFLKAILPKKPSQKTSIKCYEANVVGKIVE 446 >UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales RepID=D0L455_GORB4 Length = 461 Score = 512 bits (1320), Expect = e-144, Method: Composition-based stats. Identities = 189/452 (41%), Positives = 269/452 (59%), Gaps = 10/452 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK F C CG +W G+C C W ++ EV S A A Sbjct: 1 MAK-PKSTFRCTACGRQVAKWVGRCPDCGEWGSVDEV------TTLFAAGTSATAAVAPS 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + +++++I TG EFDRVLG GVVPGS IL+ G PG GKSTLLL+T+ A Sbjct: 54 SPARRITEIDAASSAAVPTGIGEFDRVLGRGVVPGSVILLAGEPGVGKSTLLLETVKHWA 113 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 LY+TGEES QV MRA R G +N+ + +E+ + I + +P LM++DS+ Sbjct: 114 GLGRTALYITGEESAGQVRMRAERTGAVHENVYLAAESDLATILGQVDAVRPSLMIVDSV 173 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + G V Q+R L AK RG+A+++VGHVTKDG++AGP+ LEH +D Sbjct: 174 QTVVATGADGVTGGVTQIRAVTTALVSLAKNRGIAVILVGHVTKDGAVAGPRSLEHLVDV 233 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD S R +R KNRFG +E+G F + G+ +V++PS IFL + D SG++ Sbjct: 234 VLSFEGDRHSTLRMVRGIKNRFGPADEVGCFEQRDDGIHQVTDPSGIFLHQRDSDVSGTA 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQ-MADQDV 358 MV +G RPL+ E+Q+L + S MA PRR G++ R+A++LAVL GL+ +A ++ Sbjct: 294 TMVTMDGKRPLVGEVQSLANGSQMATPRRAVSGMDSARVAMVLAVLQSRMGLEQIAKNEI 353 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +V VGG++VTE +ADLA+ LA+ S++ RP+P + GEVGLAGE+R V + RI+E Sbjct: 354 YVATVGGMRVTEPAADLAIALAVHSAMTKRPVPATTIAIGEVGLAGEVRRVSAVSRRIAE 413 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL 450 A + GFR AI+P +K P+GM+I V L Sbjct: 414 AQRLGFRHAIIP-GGTDEKLPKGMRITRVGDL 444 >UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales RepID=Q3AH17_SYNSC Length = 465 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 199/453 (43%), Positives = 281/453 (62%), Gaps = 5/453 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 FVC CGA ++ G+C C +WN++ E A R +A + Sbjct: 3 KSTAVFVCQVCGARARQFFGRCPECASWNSLVEQSQPADDGRRRRSAPDPEVAAAP-RRS 61 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 ++ + + L R +TG EFDRVLGGG+VPGS +L+GG+PG GKSTLLLQ+ +A Sbjct: 62 TAMASLEDQPLQRLATGSAEFDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQSASAMAAGA 121 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 LYV+ EES QQV +R RL L +L+ET +E + E +P + +IDSIQ +H Sbjct: 122 SVLYVSAEESAQQVKLRWQRLAGGASELQLLAETDLELVLEELEALRPAVAIIDSIQALH 181 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 A++ S+PGSV QVRE AA L R AK + +++++VGHVTK+G LAGPKVLEH +D + Sbjct: 182 DANLTSAPGSVGQVRECAAALQRLAKRQNISLLLVGHVTKEGMLAGPKVLEHLVDAVLTF 241 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD + R LR+ KNRFGA +ELG+F M GL EV NPS +FLS D SG + +V Sbjct: 242 EGDRFASHRLLRAVKNRFGATHELGLFEMQSGGLAEVGNPSELFLS--DARASGVATIVA 299 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EGTR L+V++QALV+ + A+PRR A G+ NRL +LAVL +H GL ++ D ++ V Sbjct: 300 CEGTRSLVVDLQALVNVTSYASPRRTATGIGTNRLHQILAVLEKHMGLPLSRFDCYLAVA 359 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG++V E +ADL + A+V+S RD LP V+ GE+GL G++RPV + RI EAA+ G Sbjct: 360 GGLEVEEPAADLGVAAAVVASFRDLTLPAGTVLIGELGLGGQLRPVGQLELRIQEAARLG 419 Query: 424 FRRAIVPAANVPKKAPEGMQ--IFGVKKLSDAL 454 F+RA+VP + G+ + +++AL Sbjct: 420 FQRAVVPRGSGLGDLASGLDLALLEADSVTEAL 452 >UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria RepID=Q0BVC8_GRABC Length = 460 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 204/463 (44%), Positives = 288/463 (62%), Gaps = 14/463 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M K + +VC CGA YP+W G+C AC WN+I E +++P+ R + Sbjct: 1 MVK-DRARYVCQACGAVYPKWAGRCEACGEWNSIVEEAPSSAPVRVTPGRRLAFVS---- 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 S PR +TG +E DRVLGGG+VPGS IL+GG+PG GKSTL+LQ LA Sbjct: 56 ---LPASGADAAPPPRIATGIEELDRVLGGGLVPGSVILVGGDPGIGKSTLMLQAAAALA 112 Query: 121 QQMKTL-YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMVIDS 178 + YV+GEE+++QV +RA RL L L + + + I E + L+VIDS Sbjct: 113 RAGGRALYVSGEEAVEQVRLRARRLHLADAPLELAASGHVRDIAATLETARDAALVVIDS 172 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ M + + S+PG+VAQVR L R AK+ G A+V+VGHVTK+G++AGP+VLEH +D Sbjct: 173 IQTMWLDSLDSAPGTVAQVRACGFELIRLAKSVGFALVLVGHVTKEGAIAGPRVLEHMVD 232 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +GD +FR LR KNRFGA +E+GVF MT+ GL EV+NPSA+FL+ +GS Sbjct: 233 AVLYFEGDRGHQFRILRGVKNRFGATDEIGVFEMTDLGLSEVANPSALFLAERRGNIAGS 292 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V EG+RP+L+E+QAL+ + +PRR VG + RL +LLAVL GL++A DV Sbjct: 293 AVFAGMEGSRPVLLEVQALLAPNAGGSPRRAVVGWDSARLGMLLAVLEARCGLKLAQNDV 352 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++N+ GG+++TE +ADLA+ A++S+ ++P+ + V FGEVGL+GEIR VP + R+ E Sbjct: 353 YLNIAGGLRITEPAADLAVAAALISAATEQPVAANEVFFGEVGLSGEIRQVPQTEARLKE 412 Query: 419 AAKHGFRRAIVPAANVPKKA----PEGMQIFGVKKLSDALSVF 457 AAK GF A P K PEG+++ + LSD + F Sbjct: 413 AAKLGFEAACRPRRVARGKNRPSPPEGLKLEEIGHLSDLVRRF 455 >UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobacteria RepID=Q215U8_RHOPB Length = 503 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 215/457 (47%), Positives = 295/457 (64%), Gaps = 14/457 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL---AASPMVARNERLSGYAGS 57 MAKA +FVC CGA Y RWQG+C +C WNT+ E L A+ P R++R Sbjct: 17 MAKAT-LSFVCQNCGAAYNRWQGKCESCGEWNTLAEEDLTGAASMPASIRSKRR------ 69 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 K++ L+ S E+ PR S+G E DRV GGG V GS +L+GG+PG GKSTLL Q Sbjct: 70 GRAFKLESLTGTS-EQAPRLSSGLGELDRVTGGGFVRGSVLLVGGDPGIGKSTLLTQATS 128 Query: 118 KLAQ-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMV 175 +A+ + +Y++GEE++ QV +RA RLGL + + +ETS+E I E P+L+V Sbjct: 129 LMAREGHRIVYISGEEAVAQVRLRATRLGLADAAVQLAAETSVEDIITTLSEGAVPRLIV 188 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 IDSIQ M V+S+PG+V QVR +A L RFAK G AI++VGHVTKDG +AGP+V+EH Sbjct: 189 IDSIQTMWTDTVESAPGTVTQVRASAQALIRFAKKSGAAIILVGHVTKDGQIAGPRVVEH 248 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +G+ +FR LR+ KNRFG +E+GVF MT GLREV+NPS +FLS D + Sbjct: 249 MVDAVLSFEGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVANPSELFLSERDLGS 308 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 G++V EGTRP+LVE+QALV + + PRR VG + +RL+++LAVL H G++++ Sbjct: 309 PGTAVFAGMEGTRPVLVELQALVVPTTLGTPRRAVVGWDSSRLSMVLAVLEAHCGVKLSG 368 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 DV+ NV GG+++ E +ADLA A+VSSL + PLP D V FGE+ L+G +RPV R Sbjct: 369 YDVYFNVAGGLRINEPAADLAAAAALVSSLANAPLPTDAVYFGEISLSGAVRPVAQSSAR 428 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLS 451 + EAAK GF RAI+P + G+ + V LS Sbjct: 429 LKEAAKLGFARAILPETARGDAGGDAGLTLNTVGGLS 465 >UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thaliana RepID=Q0WVW9_ARATH Length = 587 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 274/492 (55%), Gaps = 35/492 (7%) Query: 1 MAK----APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA---------- 46 M K K +VC CG +W G C ACH T+ + + Sbjct: 97 MNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLG 156 Query: 47 -RNERLSGYAGSAGVAKVQKLSDIS---LEELPRFSTGF---KEFDRVLGGGVVPGSAIL 99 + + + +L+D+ ++ R S E RVLGGG+ PGS IL Sbjct: 157 FTEGKGLSWLPEQATVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLIL 216 Query: 100 IGGNPGAGKSTLLLQTLC------KLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 IGG+PG GKSTLLLQ +LA+ LY++GEES++Q+ RA R+ + T+ L + Sbjct: 217 IGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYL 276 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 S + ++ I A P+ ++IDSIQ +++ DV S G + QV+E + L RFAK + Sbjct: 277 FSSSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNI 336 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 + +VGHVTK G +AGP+VLEH +D + L+G+ S +R LRS KNRFG+ +ELGVF M Sbjct: 337 PVFLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMA 396 Query: 274 EQGLREVSNPSAIFLSRGDEVT---SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVA 330 GL VSNPS I+LS+ + + +G +V VV +G+R L+E+QAL + R Sbjct: 397 NSGLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSP--GSTVSRHV 454 Query: 331 VGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPL 390 G++ +R +++AVL + GL++ + +F+NV G+ ++ET+ DLA+ A+ SS + P+ Sbjct: 455 NGVQASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPI 514 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA---NVPKKAPEGMQIFGV 447 P + GE+GL GE+R VP ++R+S AK GF + +VP + ++ + + ++I G Sbjct: 515 PHGVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGC 574 Query: 448 KKLSDALSVFDD 459 K L + ++ Sbjct: 575 KNLKELINAVFK 586 >UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID=Q1IZ25_DEIGD Length = 449 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 201/458 (43%), Positives = 269/458 (58%), Gaps = 15/458 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK +VC CG + G+C C AWN+ E AA P R G G Sbjct: 1 MAKVT-TRYVCTSCGYQSAKPLGRCPNCQAWNSFEEELPAAVPGKTRMGGSGG-YGGVVG 58 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K+ LS + E PR +G E DRVLGGG+V GS LIGG PG GKSTLLLQ +LA Sbjct: 59 GKLTPLSTVGRREEPRLPSGIPELDRVLGGGLVAGSVTLIGGEPGIGKSTLLLQVADRLA 118 Query: 121 QQMK-TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + + LYV GEESL+Q+ +RA RL + + + + +T E I + +E +P L ++DSI Sbjct: 119 RNGQTVLYVAGEESLEQIRLRADRLNVTAE-IQLTRDTRAEHIAALMQEHRPALCIVDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + +PG VAQVRE A LTR AK G A V+VGHVTK+G++AGPKV+EH +D Sbjct: 178 QTV-TVEAEGAPGGVAQVREGTALLTRAAKETGTATVLVGHVTKEGTVAGPKVMEHIVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 +V L+ FR LRS KNRFG ELGVF M +GL V NPSA FL+ GS Sbjct: 237 TVFLE--TVGAFRLLRSVKNRFGQAGELGVFEMRGEGLVAVENPSAAFLAERPVGVPGSV 294 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V +G RP+L+E+QAL + NPRRV VGL+ R+ ++LAVL R L + DV+ Sbjct: 295 VAATIDGQRPMLLEVQALAAKTPYPNPRRVVVGLDPRRVDVVLAVLERRLDLTLGGLDVY 354 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VN+ GG+KV + DL + LA+ S++ R LP ++ VFGEVGLAGE+R R EA Sbjct: 355 VNLAGGLKVPDPGLDLPVALAVYSAVVGRALPGNVAVFGEVGLAGEVRSTQGALRRAEEA 414 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A+ G+R IVP ++ GV+ + +A+ + Sbjct: 415 ARAGYRSLIVPPGLEGRE--------GVRSVEEAVGLV 444 >UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1 Tax=Sorghum bicolor RepID=C5Z4B1_SORBI Length = 673 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 169/478 (35%), Positives = 273/478 (57%), Gaps = 26/478 (5%) Query: 5 PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERL-SGYAGSAGVAK- 62 K ++VC+ CG +W G C C A T+ E ++ A E S + G + + + Sbjct: 194 EKNSYVCSNCGEGNSQWWGICRHCGAVGTVVEYVAGSNSGGASAEGSHSHHIGRSWIPQK 253 Query: 63 -----VQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 Q L ++ + +P + + E RVLGGG+VPGS +L+GG+PG GKS+L Sbjct: 254 AKEMVPQSLPEVNKGVDQAEWRIPLWGSFGMEISRVLGGGIVPGSLVLVGGDPGVGKSSL 313 Query: 112 LLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLI 165 +LQ + + K +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 314 MLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGTDIEDILDK 373 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 + PK ++IDSIQ +++ S G+++QV+E + L RFAK + + ++GHVTK G Sbjct: 374 IQPLSPKALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFLIGHVTKTG 433 Query: 226 SLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 +AGP++LEH +D + ++G+ S R LRS KNRFG+ +ELGVF M E GL+ V NPS Sbjct: 434 DIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSTDELGVFEMAEFGLQAVLNPSQ 493 Query: 286 IFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILL 342 +FL+ D E+ +G +V V+ +G+R +E+QAL + + VG+ +R +++ Sbjct: 494 MFLTEHDSDSEILAGLAVAVILDGSRTFALEVQALCVSGSHRSGQ--VVGIPPSRADVII 551 Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +VL + G+++ D +F+NVV G K+TET+ DLA+ ++ SS + P+P D+ GEVGL Sbjct: 552 SVLMKQAGVKLQDSTIFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAFIGEVGL 611 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP--EGMQIFGVKKLSDALSVFD 458 GE+R VP +R+ AK G+++ +VP + P ++I L ++ Sbjct: 612 GGELRAVPRMDKRVMAIAKLGYKKCVVPKTSEKLLRPLDLDIEILPCSNLKQVINTVF 669 >UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chromatophora RepID=B1X477_PAUCH Length = 470 Score = 502 bits (1294), Expect = e-141, Method: Composition-based stats. Identities = 186/462 (40%), Positives = 276/462 (59%), Gaps = 18/462 (3%) Query: 7 RAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK-VQK 65 ++C CGA ++ G+C C+ W++ AS R +L +AK + Sbjct: 6 TTYICQNCGAQSRQFFGRCPRCNNWDSFV---TQASSSNHRATKLYEEISDLPIAKYSKP 62 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 + + + R S+G+ EFDRVLGGG VPGS +L+GG PG GKSTLLLQ+ +++ Sbjct: 63 IDQVKELFVERLSSGYNEFDRVLGGGFVPGSLVLVGGEPGIGKSTLLLQSAMIMSRYSSI 122 Query: 126 LYVTGEESLQQVAMRAHRLGL-----------PTDNLNMLSETSIEQICLIAEEEQPKLM 174 LYV+ EES QQV +R RL T L++++ET +E I + +P + Sbjct: 123 LYVSAEESAQQVKLRWRRLNECKNLTNFHQENKTSQLHLMAETELEIILQELQSFRPAVA 182 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDSIQ ++ + + S+PGS++QVRE + L + AK +G AI++VGHVTK+G+ AGPKVLE Sbjct: 183 VIDSIQAIYTSGLSSAPGSLSQVRECSLALQKLAKQQGTAILLVGHVTKEGTFAGPKVLE 242 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +GD R LR+ KNRFGA ELGVF M QGL E++NP IFL ++ Sbjct: 243 HLVDAVITFEGDRFGNNRLLRAIKNRFGANYELGVFEMGNQGLVELTNPFEIFLG-RNKA 301 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 T+G + +V +EGTRPLLVE+QAL++ + NPRR+ +G+ NRL +LAVL +H G +++ Sbjct: 302 TTGVATIVAYEGTRPLLVEVQALINTANYGNPRRITIGISTNRLHQILAVLEKHMGFRLS 361 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D ++ V GGV V E +ADL A+V+S LP V GE+GL+G++RPV Sbjct: 362 SFDCYLAVAGGVTVQEPAADLGAAAAIVASYNTLILPPKTVFIGELGLSGKLRPVTQIPL 421 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQI--FGVKKLSDAL 454 R+ E A+ GF + ++P + + I V+ + +A+ Sbjct: 422 RLRECARLGFDKVVMPKIEGLENIAIDLNISLLQVETVMEAI 463 >UniRef50_Q9FK38 DNA repair protein-like n=8 Tax=rosids RepID=Q9FK38_ARATH Length = 484 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 175/486 (36%), Positives = 274/486 (56%), Gaps = 30/486 (6%) Query: 1 MAK----APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA---------- 46 M K K +VC CG +W G C ACH T+ + + Sbjct: 1 MNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLG 60 Query: 47 -RNERLSGYAGSAGVAKVQKLSDIS---LEELPRFSTGF---KEFDRVLGGGVVPGSAIL 99 + + + +L+D+ ++ R S E RVLGGG+ PGS IL Sbjct: 61 FTEGKGLSWLPEQATVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLIL 120 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSI 159 IGG+PG GKSTLLLQ +LA+ LY++GEES++Q+ RA R+ + T+ L + S + + Sbjct: 121 IGGDPGIGKSTLLLQG-SELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYLFSSSDL 179 Query: 160 EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVG 219 + I A P+ ++IDSIQ +++ DV S G + QV+E + L RFAK + + +VG Sbjct: 180 QDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNIPVFLVG 239 Query: 220 HVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLRE 279 HVTK G +AGP+VLEH +D + L+G+ S +R LRS KNRFG+ +ELGVF M GL Sbjct: 240 HVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMANSGLEV 299 Query: 280 VSNPSAIFLSRGDEVT---SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQN 336 VSNPS I+LS+ + + +G +V VV +G+R L+E+QAL + R G++ + Sbjct: 300 VSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSP--GSTVSRHVNGVQAS 357 Query: 337 RLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 R +++AVL + GL++ + +F+NV G+ ++ET+ DLA+ A+ SS + P+P + Sbjct: 358 RADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPIPHGVAF 417 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA---NVPKKAPEGMQIFGVKKLSDA 453 GE+GL GE+R VP ++R+S AK GF + +VP + ++ + + ++I G K L + Sbjct: 418 IGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKNLKEL 477 Query: 454 LSVFDD 459 ++ Sbjct: 478 INAVFK 483 >UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio RepID=B8J0Q7_DESDA Length = 458 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 180/435 (41%), Positives = 256/435 (58%), Gaps = 10/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + ++C+ CGA +W+GQC CH WNT+ A S R A V Sbjct: 1 MAK-LREIYICSSCGAQTMQWRGQCPGCHEWNTLEASVQARSSGKTRTSLGDSSASGRPV 59 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A L + + +G + DRVLG G+VPG+AIL+GG PG GKSTLLLQ +A Sbjct: 60 A----LCQVEDAGHEPYGSGLQALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGLVA 115 Query: 121 Q-----QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 LY +GEESL Q+ RA RLG+ NL L+ + +E + A + P L+V Sbjct: 116 AQMASAGRPVLYASGEESLPQIKGRAERLGMLDPNLLALATSRVEDVVEAANAQNPALLV 175 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DS+Q + + + PG+V+QVR A L + G +++VGHVTKDG LAGP++LEH Sbjct: 176 VDSVQTLTSLEAEGLPGNVSQVRAVATSLLELCRRLGCTLILVGHVTKDGVLAGPRLLEH 235 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + L+GD FR LR KNRFG EL VF M ++G+ V +PS FL + D Sbjct: 236 MVDTVISLEGDRRQMFRLLRVFKNRFGPNEELLVFRMGQRGMEVVDDPSTFFLGQRDASL 295 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 SG++V++ +G RPL VE+QALV + ++ PRR A+G + RL +LLAVL + L A Sbjct: 296 SGTAVVMAVDGQRPLAVEVQALVSRTFLSIPRRAALGFDVGRLHLLLAVLEKRLKLNFAQ 355 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D++ V GG+K+ E DLAL+ A++SS D PLP+ V++GEV L G++RPV + R Sbjct: 356 VDIYAKVGGGMKLNEPGLDLALVAAVLSSYYDVPLPEKSVLWGEVDLNGQVRPVAAQDLR 415 Query: 416 ISEAAKHGFRRAIVP 430 +++A + GF + P Sbjct: 416 LTQARRLGFDPIVHP 430 >UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponema RepID=RADA_TREPA Length = 455 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 165/459 (35%), Positives = 254/459 (55%), Gaps = 10/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK +RAF C CG +P+W G+C C WN+ E +P ++ + + S+ Sbjct: 1 MAKKTERAFSCVGCGYVHPKWLGRCPECGEWNSFEE-----TPSLSSGDVRAVKKASSSP 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + ++ R S G EFDRVLGGG V SAI+IGG PG GKSTLLLQ A Sbjct: 56 VQAFPLCAVRAQDAQRISCGIAEFDRVLGGGAVRRSAIMIGGEPGIGKSTLLLQIAA--A 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 LYV+GEES Q+ RA RL +P N+ +L T +E + + P +++DSIQ Sbjct: 114 CGKSVLYVSGEESPGQIRGRADRLNIPIQNIELLCATRVEDVERVLNTRCPTFVIVDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + + + P ++ Q++ A L + K R + HVTKDG++AGPKV+EH +D Sbjct: 174 TVFSPEAGAIPMTINQLKYCANELIAWVKERDSVLFFTAHVTKDGNIAGPKVVEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS-GSS 299 + + + + R LR+ KNRFG+V+ELG+F M E GL V + + F+S + GS+ Sbjct: 234 ISFERNEE-DIRFLRALKNRFGSVDELGIFTMGENGLSAVQDTAGFFISTRQGMFPVGSA 292 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG+R +VEIQAL + + R + ++ R++ + AV+ + GL+ +DQD++ Sbjct: 293 TVPVCEGSRVFMVEIQALTVPAKSSVTRVFSDRIDSARVSRVAAVIEKRVGLKFSDQDIY 352 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VNV GG+++ E + D+AL +A+ S+ ++ P+ + GEV L+GEIRPV + R+ A Sbjct: 353 VNVAGGIRLYEPAVDVALAMALYSARQNTPVKTNAAFIGEVSLSGEIRPVRRLKTRLKTA 412 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 GF VP V P + V L+ ++ Sbjct: 413 YGLGFSTIYVP-IGVEHDTPPPYTLRVVGTLAQTIAEIF 450 >UniRef50_C7I4G6 DNA repair protein radA n=3 Tax=Bacteria RepID=C7I4G6_THIIN Length = 520 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 248/520 (47%), Positives = 324/520 (62%), Gaps = 61/520 (11%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNER-------LSG 53 MAK P+ ++C+ECG +WQGQC C AWNT+ E ++ R +G Sbjct: 1 MAK-PQTVYICSECGGKSAKWQGQCPHCQAWNTLVETAERSTDAARPGARHGAAAAQFAG 59 Query: 54 YAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 G + L+++ E ++G E DRVLGGG+VPG +L+GG+PG GKSTLLL Sbjct: 60 RGGLTAASGPVLLTEVQAERHAHRTSGIDELDRVLGGGLVPGGVLLLGGDPGIGKSTLLL 119 Query: 114 QTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE---- 169 Q L L+ ++ LY++GEES QVA+RA RLGL + +++ET +E + Sbjct: 120 QVLANLSAELPVLYISGEESAAQVALRAQRLGLKDAPVRLMAETQLEVMLDELARGPGAG 179 Query: 170 ----------------------------------------------QPKLMVIDSIQVMH 183 + VIDSIQ ++ Sbjct: 180 PPQGGRFPLPTSPTERGRSNHSLPTGGEGRGGDALLGGQRANANVGAYSIAVIDSIQTVY 239 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 + S+PGSV+QVRE AA LTR AK G+ +V+VGHVTK+G+LAGP+VLEH +D + Sbjct: 240 TEALSSAPGSVSQVRECAAQLTRAAKASGITLVLVGHVTKEGALAGPRVLEHMVDTVLYF 299 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD SRFR +R+ KNRFGAVNELGVFAMTE GL+ VSNPSAIFLS E G+ V+ Sbjct: 300 EGDTQSRFRLIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLSTHAEPVPGTCVLAT 359 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EGTRPLLVE+QALVD++ +PRR++VGL+ RLA+LLAVLHRH G+ DQDVFVN V Sbjct: 360 LEGTRPLLVEVQALVDNAAAPSPRRLSVGLDAARLAMLLAVLHRHAGVASGDQDVFVNAV 419 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GGV++TE +ADLA+LLA+ SSLR+RPLP+ L+ FGEVGLAGEIRP P GQER+ EAAK G Sbjct: 420 GGVRITEPAADLAVLLAIQSSLRNRPLPRGLLAFGEVGLAGEIRPAPRGQERLREAAKLG 479 Query: 424 FRRAIVPAANVPK---KAPEGMQIFGVKKLSDALSVFDDL 460 F AI+PAAN PK K EG+++ V ++ +AL V L Sbjct: 480 FSAAIIPAANAPKGAGKQFEGLELHPVSRIEEALDVVRGL 519 >UniRef50_B7GN99 DNA repair protein radA n=20 Tax=Bifidobacteriaceae RepID=B7GN99_BIFLI Length = 512 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 179/510 (35%), Positives = 272/510 (53%), Gaps = 55/510 (10%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ +VC+ECG + P+W G+C C W T+ E A +R + + V Sbjct: 1 MAKSS-VQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSV 59 Query: 61 -------AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 + + ++++ E + R TGF EFDRVLGGGVVPGS LI G PG GKSTLLL Sbjct: 60 TVANNARSAARPITEVGTESVERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLL 119 Query: 114 QTLCKLAQ----------------------------------------QMKTLYVTGEES 133 QT +A+ LY++GEES Sbjct: 120 QTAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQDNTASTHANTVLYISGEES 179 Query: 134 LQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGS 193 QV +RA R+ NL + S T + + + E+ +P L ++DS Q + +V G Sbjct: 180 QAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGG 239 Query: 194 VAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRT 253 QVRE A+ L AKT + + +VGHVTKDGS+AGP+ LEH +D +GD+++ R Sbjct: 240 STQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRM 299 Query: 254 LRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE------VTSGSSVMVVWEGT 307 LR+ KNRFG +E+G F M+ +G+ EV++P+ +FLS G+ V +G Sbjct: 300 LRAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGH 359 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 R L +E+QALV S++ PRR G++ +R+A+L+AVL+RH L + D++++ + G + Sbjct: 360 RSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQ 419 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 E +DLA++ A+ S+ +P+ + GE+ L G++RPVP + R+ EAA+ GF A Sbjct: 420 AKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTA 479 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 ++P P EG+++ LSDAL Sbjct: 480 VIPPLRKP-VHVEGLRLVESNTLSDALDAL 508 >UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibrionales RepID=B8DKJ9_DESVM Length = 492 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 181/453 (39%), Positives = 262/453 (57%), Gaps = 11/453 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + +VC CGA P+W+GQC AC WNT+ L +P + G + ++ Sbjct: 2 KLRETYVCTACGARAPQWRGQCPACKEWNTLE---LTVAPREGKAGARPGASSVGAQSRA 58 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 Q L D++ F +G DRVLG G+VPG+AIL+GG PG GKSTLLLQ +A Sbjct: 59 QPLKDVADHGAEPFGSGLDALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGAVAAAG 118 Query: 124 KT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-EEQPKLMVIDSIQV 181 + LY++GEESL Q+ RA RLG+ D L ++ T ++ + E E P L+++DS+Q Sbjct: 119 RGVLYLSGEESLPQLKARAARLGVLHDELMAVATTRLDDVLPHLEGPEAPALLIVDSVQT 178 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 + + PG+V+QVR + + K G +++VGHVTKDG+LAGP++LEH +D + Sbjct: 179 VSSDRAEGLPGNVSQVRAVSTEIVEACKRSGTTVLLVGHVTKDGALAGPRLLEHLVDTVI 238 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 ++GD FR LR KNRFG EL VF M EQG+ V +PS FL D SG++++ Sbjct: 239 SIEGDRRQMFRLLRVLKNRFGPNQELLVFRMVEQGMEVVEDPSTFFLGARDPALSGTALV 298 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 + +G RPL VE+QALV S +A PRR +G + NRL +LLAVL + L D++ Sbjct: 299 MAVDGQRPLAVEVQALVTRSYLAIPRRTGLGFDVNRLHLLLAVLEKRLRLNFGQVDIYAK 358 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 + GG+K+ + DL L+ A++SS D PLP+ V +GEV L G++RPV + R +A + Sbjct: 359 IGGGMKLQDPGMDLGLVAAVLSSFYDLPLPERAVFWGEVDLNGQVRPVAAHTIRRDQARR 418 Query: 422 HGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 G+ + PA + + P V L DAL Sbjct: 419 LGYTPILHPADDAARGVPT------VAALQDAL 445 >UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4J073_MAIZE Length = 641 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 169/479 (35%), Positives = 272/479 (56%), Gaps = 26/479 (5%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMV-------ARNERLSGYAG 56 + ++VC+ CG +W G+C C+A T+ + A P + + S Sbjct: 161 KERSSYVCSNCGEGDSQWWGKCRHCNAMGTVDKYVGVAGPESGGVDVEWSHHIGRSWMPQ 220 Query: 57 SAGVAKVQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKST 110 A Q L ++ + +P + + E RVLGGG+VPGS IL+GG+PG GKS+ Sbjct: 221 KAKEVVPQSLQEVNKGVDQAQWRIPLWGSFGMEISRVLGGGIVPGSLILVGGDPGVGKSS 280 Query: 111 LLLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICL 164 L+LQ + + K +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 281 LMLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGTDIEDILD 340 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 + P+ ++IDSIQ +++ S G+++QV+E + L RFAK + + ++GHVTK Sbjct: 341 KIQPLSPRALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFLIGHVTKT 400 Query: 225 GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPS 284 G +AGP++LEH +D + ++G+ S R LRS KNRFG+ +ELGVF M E GL+ V NPS Sbjct: 401 GDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSADELGVFEMAEFGLQAVLNPS 460 Query: 285 AIFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL 341 +FL+ D E+ +G +V V+ +G+R +E+QAL + + VG+ Q+R ++ Sbjct: 461 QMFLTEHDSDSEIMAGLAVAVILDGSRTFALEVQALCVSGYHRSGQ--VVGIPQSRADVI 518 Query: 342 LAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 ++VL + GL++ D VF+NVV G K+TET+ DLA+ ++ SS + P+P D+ GEVG Sbjct: 519 ISVLIKQAGLKLQDNIVFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAFIGEVG 578 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP--EGMQIFGVKKLSDALSVFD 458 L GE+R VP +R+ +K G+++ +VP + P ++I L ++ Sbjct: 579 LGGELRTVPRMDKRVIAISKLGYKKCVVPKTSEKLLRPLDIDIEILPCSNLKQLINTVF 637 >UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID=Q76B91_ORYSJ Length = 619 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 171/478 (35%), Positives = 270/478 (56%), Gaps = 24/478 (5%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAG----- 56 A + ++VC CG + +W G C C A T+T+ + P + + + Sbjct: 141 AGKERASYVCGNCGEGFSQWWGTCRHCEAMGTLTKYVPGSDPGASVGSHHAFRSWIPQKS 200 Query: 57 ----SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 + +V K D S +P E RVLGGGVVPGS IL+GG+PG GKS+L+ Sbjct: 201 KEMVPQSLQQVTKGVDQSEWRIPLSGNFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLI 260 Query: 113 LQTLCKLAQQ------MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIA 166 LQ +++ +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 261 LQLASIMSENIGAGESSAIVYVSGEESIEQIGNRADRMSIKSRNLYLYSSTDIEDILDKI 320 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 + P+ ++IDSIQ +++ S G++ QV+E + L RFAK + ++++GHVTK G Sbjct: 321 QPLSPRALIIDSIQTVYLRGFAGSAGNMTQVKECTSALLRFAKLTNIPVILIGHVTKTGD 380 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 +AGP++LEH +D + ++G+ R LRS KNRFG+ +ELGVF M+ GL+ V NP+ + Sbjct: 381 IAGPRLLEHIVDVVLYMEGERCLSHRLLRSVKNRFGSTDELGVFEMSGYGLQPVLNPTEM 440 Query: 287 FLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRR-VAVGLEQNRLAILL 342 FL+ D E+ +G +V VV +G+R +E+QAL +PR VG+ +NR I++ Sbjct: 441 FLTEHDLDSEILAGLAVAVVLDGSRTFAIEVQALCVS---GSPRNGEVVGIPRNRADIII 497 Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +VL + GL++ D VF+NVV G +TET+ DLA+ ++ SS + P+P D+ GEVGL Sbjct: 498 SVLMKQAGLKLQDNAVFLNVVSGFMLTETAGDLAIAASICSSFLEYPIPNDIAFIGEVGL 557 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEG--MQIFGVKKLSDALSVFD 458 GE+R VP +R+ AK G+++ +VP + P ++I L + ++ Sbjct: 558 GGELRTVPRMDKRVLAIAKLGYKKCVVPKTSEKLLRPLNLELEILPCSNLKEVINTVF 615 >UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9H8_THEAS Length = 450 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 179/461 (38%), Positives = 259/461 (56%), Gaps = 17/461 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA + C+ C G+C +C +W T+ + A S G+ Sbjct: 1 MAPKTSSRYRCSNCDFVSLTLVGRCPSCGSWGTMEREEILP----------VSSAPSGGL 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K+ L + E R +G + D VLGGG +PG +L+GG PG GKSTLLLQ+ +A Sbjct: 51 PKLVTLEEAPPER--RILSGLPDLDLVLGGGWLPGGVVLLGGEPGVGKSTLLLQSCSAVA 108 Query: 121 QQM-KTLYVTGEESLQQVAMRAHRLGLPT-DNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 Q K +YV+GEE+ Q+A RA RL L +N +L + + AE +L+V+DS Sbjct: 109 QGGTKVVYVSGEETPSQIASRAKRLQLTLGENFKVLVCDDVMKAIGAAEAHGAELLVVDS 168 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q + D PGS QVR A + FAK G + VM+GH+TK G++AGPK LEH +D Sbjct: 169 VQALRHPDASGWPGSPNQVRAVAENVIGFAKRTGASAVMIGHITKQGAIAGPKALEHLVD 228 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 ++ G+ SR R LR+ KNRFG ELG+F M E+GL VS+PSA+F DE +G Sbjct: 229 VVLVFFGERTSRNRLLRAEKNRFGGTEELGIFQMCERGLVPVSDPSALFWGE-DEGVAGV 287 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ V EG+RP+L EIQAL S P+R + G+E NRL +L+AV+ R G+ + DV Sbjct: 288 AMGVPMEGSRPILSEIQALTCQSPYPYPKRASKGIELNRLQLLMAVMDRRCGMSLRTSDV 347 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++NV GG+ + + + DLA+ A+ SS+ D PL GEVGLAGE+RPVP +R+ E Sbjct: 348 YLNVAGGLAIQDPAVDLAVCAAIASSVEDVPLDMKACFIGEVGLAGEVRPVPRMAQRVRE 407 Query: 419 AAKHGFRRAIVPAANVPKKAPEGM--QIFGVKKLSDALSVF 457 A + GFRR +V A ++ + I V+ + + + + Sbjct: 408 AERFGFRRFVVSAKDLKADGLDCSRDDIIPVRNVREMVKLV 448 >UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQ08_9SPIO Length = 464 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 176/460 (38%), Positives = 259/460 (56%), Gaps = 9/460 (1%) Query: 1 MAKAP--KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA 58 MAK R F C+ CG P+W G+C C WNT E A + Sbjct: 1 MAKKKAGGRIFRCSSCGYSQPKWLGRCPGCGEWNTFEEQFQEADFTPGFASSAVSVRQT- 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 A L + + + R +TG EFDRVLGGG V SA+LIGG PG GKSTLL+Q Sbjct: 60 DEAHPVPLEQVEVHDTARITTGISEFDRVLGGGAVKRSAVLIGGEPGIGKSTLLMQAAA- 118 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 A +TLYV+GEES Q+ RA RLG+P N+ +L S+E I + P +++IDS Sbjct: 119 -AAGQRTLYVSGEESAGQIRGRADRLGVPLKNIELLCTNSVENIEKVLNNINPLVVIIDS 177 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q + + PG++ Q++ A L ++ K R + + HVTK+G +AGPKVLEH +D Sbjct: 178 VQTLFSPQAGTIPGTINQLKYCANELVQWVKERDAVLFLTAHVTKEGIIAGPKVLEHIVD 237 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS-G 297 + + + D R LR+ KNRFG+V+ELG+F M E+GL V +P+A+F+ + G Sbjct: 238 TVISFERNED-DVRFLRALKNRFGSVDELGIFRMDEKGLAAVQDPAALFIIQRQGELPAG 296 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S+ + V+EG+R +VEIQAL + R + ++ R++ + AVL + GL+ +DQD Sbjct: 297 SATVPVFEGSRVFMVEIQALTVPAKGTMTRVFSDKVDSARVSRVAAVLEKRIGLRFSDQD 356 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 +++NV GG+++ E + DLAL LA+ S+ D P ++ GE+ LAGEIRPV + I Sbjct: 357 IYINVAGGIRLREPAIDLALALALYSARTDIPAHKNEAFIGELSLAGEIRPVRRLKPLIK 416 Query: 418 EAAKHGFRRAIVPAANVPKKAPE-GMQ-IFGVKKLSDALS 455 A GF + VPAA PE +Q + V+ L++ + Sbjct: 417 TAQSLGFTQLYVPAAAGDGDEPEPAIQGVSRVENLAETIK 456 >UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales RepID=D1BVG5_XYLCX Length = 498 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 202/473 (42%), Positives = 279/473 (58%), Gaps = 24/473 (5%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 AKA + A+ C ECG +W G+C C AW T+ E AAS R A Sbjct: 26 AKAARPAYRCTECGWAAAKWVGRCGECQAWGTVAEDGPAAS-----GPRTVAVTPVRSAA 80 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ 121 + +++I +E TG E DRVLGGG+VPG+ +L+ G PG GKSTLLL+ + A+ Sbjct: 81 R--PIAEIDVESARSAPTGVDELDRVLGGGLVPGAVVLMAGEPGVGKSTLLLEVASQYAR 138 Query: 122 Q--------------MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 LYVTGEES QV +RA R+G L + +ET + + E Sbjct: 139 GVGAPKGGLRAVGGERTVLYVTGEESAGQVRLRAERVGALAPTLLLAAETDLGTVLGHVE 198 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 P L+V+DS+Q + A+V G V+QVRE AA L AK R V +++VGHVTKDG++ Sbjct: 199 ATSPALLVVDSVQTIASAEVDGVAGGVSQVREVAAALIAVAKERQVPVLLVGHVTKDGTV 258 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+ LEH +D +GD SR R +R+ KNRFG +E+G F +TE G+ +++PS +F Sbjct: 259 AGPRTLEHLVDVVCQFEGDRHSRLRMVRAVKNRFGPTDEVGCFELTETGITGLTDPSGLF 318 Query: 288 LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHR 347 LS GS V V EG RPL +EIQ+LV S +ANPRR G+E +RLA +LAVLHR Sbjct: 319 LSHLGAGVPGSCVTVTLEGRRPLALEIQSLVAPSPLANPRRTTNGMESSRLAQILAVLHR 378 Query: 348 HGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR 407 H L++ADQDV+++ VGG + E +ADLA LA+VS+ LP V FGEVGLAG++R Sbjct: 379 HASLRLADQDVYLSTVGGARAGEPAADLAAALAIVSARTGDALPAGTVAFGEVGLAGDVR 438 Query: 408 PVPSGQERISEAAKHGFRRAIVP---AANVPKKAPEGMQIFGVKKLSDALSVF 457 PV R+SEAA+ GF RA+VP A + ++ G+++ +++A+ Sbjct: 439 PVTGIDRRLSEAARLGFVRAVVPPGTRAGLSARSAAGLELLESAHVAEAVDAV 491 >UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae RepID=B1L9V3_THESQ Length = 441 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 174/452 (38%), Positives = 261/452 (57%), Gaps = 24/452 (5%) Query: 7 RAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKL 66 + FVC+ CG P+W G+C C ++T EV R + G L Sbjct: 2 KKFVCSNCGYVSPKWFGRCPQCGEYDTAEEVV-------QRRKNREGSPSL-----FLNL 49 Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL 126 D L R STGF E DR GG+VPG IL+ G PG GKST+ LQ + A++ + Sbjct: 50 EDAGEISLERLSTGFSELDRAFRGGIVPGQVILLSGEPGIGKSTIALQIAERFAERGLVV 109 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLS-ETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185 YV+GEES QQ+ +RA RL L +L+ E I++I + ++ MV+DSIQ + + Sbjct: 110 YVSGEESPQQLKLRADRLLLKRKKDILLTLENDIDEIISSLQNKRVSFMVVDSIQTVFSS 169 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245 D+ SSPGS++QV+ FAK RGV +++VGHVTK+G +AGPK++EH +D +G Sbjct: 170 DLGSSPGSISQVKNVTMKTIDFAKRRGVPVLLVGHVTKEGEIAGPKLVEHMVDTVAYFEG 229 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE 305 D + R L+ KNRFG +E+ VF + E G +V NPS + GD G+ + V+E Sbjct: 230 DRRTGLRLLKITKNRFGPSDEVAVFELKENGFVQVENPS---FTEGDADLPGNVLTCVFE 286 Query: 306 GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGG 365 GT+P +V+IQALV + +P+RV G++ NR+ +L+AV+ ++ L + DV+VNVVGG Sbjct: 287 GTKPFVVQIQALVSKNRTFSPKRVCKGVDANRVMLLIAVISKYLKLPIETHDVYVNVVGG 346 Query: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 ++VT+ +ADLA+ L++VSS + L + GE+GL G++R V + R++ G Sbjct: 347 LRVTDPAADLAIALSIVSSYLEVSL-HNTAAVGEIGLDGKVRKVYNINRRLNSLKSSG-- 403 Query: 426 RAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 R IVP +K +F V+ L +A+S+ Sbjct: 404 RIIVPPIEEEQKG-----VFEVRDLKEAVSII 430 >UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales RepID=Q487B6_COLP3 Length = 462 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 186/465 (40%), Positives = 276/465 (59%), Gaps = 10/465 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL--AASPMVARNERLSGYAGSA 58 M KA K FVC +CG ++ RWQGQC C AWNT+ E+++ AAS A +G Sbjct: 1 MVKAAKIEFVCTDCGMNHTRWQGQCR-CGAWNTLVEMKIPKAASKNAATRTTSTGGYAGL 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +K+++I + + STG E DRVL GGV GS +I G+PGAGK+TLL + + Sbjct: 60 TGGGSKKINEIESIDAEKRSTGIGELDRVLCGGVTTGSVNIISGDPGAGKTTLLSDLVAR 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTD--NLNMLSETSIEQICLIAEEEQPKLMVI 176 +++ +LY T EESL Q R HRL L D NL +L+ETS+E I ++ + K VI Sbjct: 120 MSKTHASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLLAETSVEAIIDELDKNKIKFAVI 179 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ + + SPGS +QV+ +A LT++ K V + ++ HV K+ +AGP+ L H Sbjct: 180 DSIQAVVTENANGSPGSPSQVKSSAQSLTQYCKQNNVTMFIIAHVNKNNEIAGPQTLVHI 239 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +D + D + RTLR++KNRFG ++ +G+F M E+G+ V NPS IFLS + Sbjct: 240 VDALLHIDTN-DGQIRTLRANKNRFGDIDTVGIFKMCERGMLSVDNPSEIFLSGSSTESP 298 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS++ + +G R LL+EIQ L + P+RV VGL NR+ +L +L +H ++ Sbjct: 299 GSTITCIRKGNRNLLLEIQCLTTETEAEFPQRVCVGLNMNRIKMLTGILRKHTKTKIF-H 357 Query: 357 DVFVNVVGGVKVT--ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D F N+VGG+K+ ET DLAL+ A++SSL D +P++ + GE+ L G++RP+ SG Sbjct: 358 DTFFNIVGGLKIDESETCIDLALVTALLSSLNDFVIPRNTCIMGELSLNGDVRPIDSGVP 417 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDALSVFD 458 R+ EAA+HGF +P N K G I VK + + + + Sbjct: 418 RVKEAAQHGFTEIFIPYRNYHKSMEGLGANIKAVKTIHELIELIK 462 >UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7W6_9DELT Length = 447 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 181/444 (40%), Positives = 247/444 (55%), Gaps = 10/444 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA PKR F C ECG P W+GQC C WNT+ E A G++ Sbjct: 1 MATKPKRVFTCTECGGVSPTWRGQCPRCGVWNTLVESVAGA--------GRKGHSLGEPS 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 L E+ F T F DRVLGGG+ PG A+L+GG PG GKSTLLLQ A Sbjct: 53 GVPVPLGSHPNEDFRPFPTAFSGLDRVLGGGLTPGGAVLLGGEPGIGKSTLLLQLAGLAA 112 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE-QPKLMVIDS 178 + +Y++ EESL Q+ RA RLG+ + L S T + P L+++DS Sbjct: 113 VAGRRVVYLSAEESLPQLKARAERLGVLHEGLLAASTTDAGAAVDVLGATPAPDLVIVDS 172 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q MHMA ++ + GSV+QVR AA AK +V+VGHVTK+G +AGPK+LEH +D Sbjct: 173 VQTMHMAGIEGAAGSVSQVRSVAAACVEAAKRGQACLVLVGHVTKEGQIAGPKLLEHMVD 232 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+G+ FR LR KNR+G +EL V M E GL EV +PS FL D SGS Sbjct: 233 TVLYLEGERRHLFRILRVLKNRYGPTDELLVMEMREAGLIEVPDPSTFFLGDRDPAVSGS 292 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V++ EG RP VE QAL S ++ PRR A+GL+ RL +LLAVL + L + D+ Sbjct: 293 AVVMAVEGRRPFAVEAQALAAKSFLSVPRRAALGLDVGRLHLLLAVLEKRLRLNLGQADI 352 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + + GG+K+ + DL + A++SS DRPLP V +GEV L+G IRPV + R+ + Sbjct: 353 YAKIGGGLKIQDPGLDLGIAAAVLSSFYDRPLPAGAVFWGEVDLSGRIRPVAAHDTRLKQ 412 Query: 419 AAKHGFRRAIVPAANVPKKAPEGM 442 A + G+ + P+A + + Sbjct: 413 AERLGYGPVLCPSAGSLGPDVDNL 436 >UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms RepID=A9RTQ6_PHYPA Length = 610 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 183/491 (37%), Positives = 280/491 (57%), Gaps = 37/491 (7%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL----------------------AA 41 K +VC +CG Y +W GQC C A N++ E + A Sbjct: 118 KTKTHWVCEDCGESYTQWWGQCRNCKAMNSMKEFKEHTGNAGKRGGAGARAVENLVLSQA 177 Query: 42 SPMVARNERLSGYAGSAGVAK-VQKLSDISL------EELPRFSTGFKEFDRVLGGGVVP 94 + V ++ R G A V Q+LSD++ LP +E RVLGGG+VP Sbjct: 178 NGTVKKSPRAGGRAWLESVGGGPQRLSDVAAGHSQLHWRLPLQGDTGQEIGRVLGGGLVP 237 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNML 154 GS IL+GG+PG GKSTLLLQ + LYV+GEES++Q++ RA RL + L + Sbjct: 238 GSLILVGGDPGVGKSTLLLQGTDEQGPG-PVLYVSGEESVEQISNRADRLNITAHELFLY 296 Query: 155 SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQ-VRETAAYLTRFAKTRGV 213 S T +E + E QP+ +++DSIQ +++A+ S GSV+Q VRE A L R AK + Sbjct: 297 SATDLELVIGSITEIQPRAVIVDSIQTVYLAEANGSAGSVSQQVRECATALLRAAKETKI 356 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 I +VGHVTK G +AGPK+LEH +D + ++G+ R LR KNR+G+ +E+GVF M Sbjct: 357 PIFLVGHVTKGGDIAGPKILEHVVDVVLYMEGERLQSHRLLRVVKNRYGSTDEVGVFEMV 416 Query: 274 EQGLREVSNPSAIFLSRGDEVT---SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVA 330 ++GL V++PS +FLS +E + ++V V EG+RP+L+E+QAL RR A Sbjct: 417 QEGLAAVASPSELFLSARNENLTNAASAAVAVTMEGSRPILLEVQALTSSVGQQPGRRTA 476 Query: 331 VGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPL 390 G++ RL++LLAVL + L++++QDVF+NVVGG+++ E +AD+A+ +A+ SS ++ + Sbjct: 477 NGVDAQRLSLLLAVLVKQASLRLSNQDVFINVVGGLQLREPAADVAIAVAICSSYFEKAV 536 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN---VPKKAPEGMQIFGV 447 +++ GE+GL GE+R V + R+ EAAK GF++ +VP + + A Sbjct: 537 DREMAFIGEIGLGGELRSVGQMERRLLEAAKLGFKKCVVPRSAAKTLKGLAGAAFVTIPC 596 Query: 448 KKLSDALSVFD 458 + + + Sbjct: 597 ADIKEVIEKLF 607 >UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae RepID=A7HJZ5_FERNB Length = 465 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 158/463 (34%), Positives = 260/463 (56%), Gaps = 12/463 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K +VC++CG + P+W G+C C WN+ E L ++ R + A Sbjct: 1 MAKA-KTIYVCDKCGYESPKWFGKCPVCGEWNSAKEFSLKDH-SETKSIRANEAGMEAPH 58 Query: 61 AKVQKL-SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 + + S L E R TG D +L GG++ G IL+GG PG GKST+ LQ + Sbjct: 59 PRFFDINSATKLLEEERIKTGINSIDELLSGGLIKGQVILLGGEPGVGKSTIALQICDSI 118 Query: 120 AQQ----MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 A+ + Y++GEES+ QV +RA RLG+ + L + SET IE I + + +L+V Sbjct: 119 ARNSNNDKRIYYISGEESVGQVGLRAKRLGINNEKLLISSETQIEDILNEIDPNKAQLIV 178 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DSIQ + D+ S G + Q++ + F+K G+ +++ HVTK+G++AGPK++EH Sbjct: 179 VDSIQTLCSVDIDSPVGGIVQIKAVVEKVRIFSKKYGIPSILIAHVTKEGTIAGPKLVEH 238 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +G+ + +R LR KNR+G E+ VF MT GL+ +S + FL+ T Sbjct: 239 VVDTVIYFEGERTTDYRILRVQKNRYGPSGEITVFQMTSNGLQGLSEDT--FLTYS--NT 294 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 G+ ++EGTRP V+IQALV M + RR++ G++ ++ I+ AVL +H L + Sbjct: 295 PGNIFTSIYEGTRPFNVQIQALVSRVKMTSGRRISHGVDVRKVIIISAVLSKHLNLPLDF 354 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+++NV GGV +T+ +LA+ A++SS D + ++ + GE+GL G IRP + Q+R Sbjct: 355 HDIYMNVSGGVNITDPGCELAIAGAILSSFLDAYI-GNVFMAGEIGLDGSIRPAVNIQKR 413 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 + A K ++P A++ + Q ++ + + +F+ Sbjct: 414 VENAKKLPIDLIVIPKASIKNTNVKSTQNIKIETVDNIRQLFN 456 >UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinobacteria (class) RepID=RADA_MYCBO Length = 480 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 173/463 (37%), Positives = 264/463 (57%), Gaps = 12/463 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA A + + C+EC +W G+C C W T+ EV + ++ R ++ +G Sbjct: 1 MANA-RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASG---- 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +S + TG E DRVLGGG+VPGS L+ G+PG GKSTLLL+ + A Sbjct: 56 --AVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWA 113 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLG--LPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 Q + LYV+GEES Q+ +RA R+G + + + +++ + + E QP L+++D Sbjct: 114 QSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVD 173 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 S+Q M ++ G V QVR A LT AK VA+++VGHVTKDG++AGP+ LEH + Sbjct: 174 SVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLV 233 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + +GD + R +R KNRFGA +E+G F + + G+ + +PS +FL + +G Sbjct: 234 DVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAG 293 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 +++ V +G RPL+ E+QAL+ +PRR G+ Q R A++ AVL +H L +A D Sbjct: 294 TAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVND 353 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 ++++ VGG+++TE SADLA+ +A+ S+ + PLP V+ GEVGLAG+IR V R+S Sbjct: 354 IYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLS 413 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 EAA+ GF A+ P GM + AL D+ Sbjct: 414 EAARQGFTIAL--VPPSDDPVPPGMHALRASTIVAALQYMVDI 454 >UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A5FVJ6_ACICJ Length = 466 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 210/467 (44%), Positives = 291/467 (62%), Gaps = 21/467 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS----PMVARNERLSGYAG 56 MAK+ FVCNECGA P+W G+C AC AWNT+ + + + R + G Sbjct: 1 MAKSA-TRFVCNECGAVAPKWAGRCEACGAWNTLEPQAVVPTGTGRKAAVQAGRGIDFVG 59 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 AG PR G +EFDRVLGGG+VP SAIL+GG+PG GKSTLLLQ Sbjct: 60 LAGETPPP----------PRIPLGIEEFDRVLGGGMVPASAILVGGDPGIGKSTLLLQAA 109 Query: 117 CKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLM 174 +LA + LYV+GEES+ Q+ +RA RL L T +N+ S T + I E+ L+ Sbjct: 110 ARLAASGRRVLYVSGEESVAQIRLRAERLDLKTAPVNLASATVLADILGSLRAERDAALV 169 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDSIQ + V+S+PG+V+QVR A L + AKT+G A+++VGHVTK+G+LAGP+VLE Sbjct: 170 VIDSIQTIWDETVESAPGTVSQVRANAFALIQAAKTQGFALMLVGHVTKEGALAGPRVLE 229 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +GD +FR LR KNRFGA +E+GVF MT +GL EV+NPSA+FL+ Sbjct: 230 HMVDVVLHFEGDRGHQFRILRGAKNRFGATDEIGVFEMTGRGLAEVANPSALFLAERHGN 289 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 +GS+V EG+RP+L+E+QAL+ + + RR +G +Q RL++LLAVL GL++ Sbjct: 290 VTGSAVFAGLEGSRPVLMEVQALLSANGAGSARRSVIGWDQGRLSMLLAVLDARCGLKLG 349 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DV++NV GG++V+E +ADLA+ A++S+ P + V FGE+GL+GE+R V + Sbjct: 350 GHDVYLNVAGGLRVSEPAADLAVAAALISAASGVPADPETVFFGEIGLSGELRQVAQVEL 409 Query: 415 RISEAAKHGFRRAIVPA----ANVPKKAPEGMQIFGVKKLSDALSVF 457 R+ EAAK GF RA +P APEGM + LSD ++ Sbjct: 410 RLKEAAKLGFGRAALPRRVAGGTRRLSAPEGMVLAEYGHLSDLVAAM 456 >UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID=C2BUU2_9ACTO Length = 505 Score = 476 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 181/492 (36%), Positives = 260/492 (52%), Gaps = 37/492 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAG---S 57 MAK K +VC+ CG ++P+W GQC +C W T+ E + A + + Sbjct: 1 MAK-EKTVYVCSSCGEEWPKWTGQCRSCGQWGTLEENVVLAKSSARTTGSGTTRSTGSYG 59 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 + + + S E R TG EFDRVL GG+VPG+ IL+ G PG GKSTLLL+ Sbjct: 60 RPASPAKPIGHYSTERAVRLPTGVGEFDRVLSGGIVPGAVILLAGEPGIGKSTLLLEVAA 119 Query: 118 KLAQQ--------------------------------MKTLYVTGEESLQQVAMRAHRLG 145 ++AQ LY+TGEE+ + V RA R+G Sbjct: 120 RIAQGTAPRSPRVSENSPGLRLVSADSETPATVDTEGKTVLYLTGEETAEAVLSRAKRIG 179 Query: 146 LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 +NL + +ET + Q E P + ++DSIQ + + +S G AQVRE A L Sbjct: 180 GVAENLYLAAETQVSQALAQIETTSPDVTIVDSIQTLTDPTMDTSIGGPAQVREVTARLI 239 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 AK+R +A+++VGHVTKDG++AGP+ LEH +D +G+ R LR+ KNR+G + Sbjct: 240 DAAKSRHMALILVGHVTKDGAVAGPRTLEHLVDVVCQFEGERTGELRLLRAVKNRYGPTD 299 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMAN 325 +G F M E G+ + +PS +FLS+ E G+ V + EG R L +EI+AL + Sbjct: 300 AVGFFQMVESGIEGIEDPSGLFLSKTAEPVPGACVTMSLEGRRALPIEIEALTTPIAGGS 359 Query: 326 PRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSL 385 PRR GL+ +R A++LAVL L D +V+ VGG + E + DLA+ LA S++ Sbjct: 360 PRRTVSGLDYSRTAMMLAVLQARLKLPFGTLDAYVSTVGGARAVEPAVDLAVALAAASAV 419 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQI 444 + + LV FGEV L GEIR + R++EAA+ GF AIVPAA K P G +I Sbjct: 420 TGQVIDPGLVAFGEVSLTGEIRSCTAVSRRVAEAARLGFTGAIVPAAATRDLKTPRGFKI 479 Query: 445 FGVKKLSDALSV 456 L +A+S+ Sbjct: 480 QAAANLREAMSL 491 >UniRef50_B8I5Q5 AAA ATPase n=13 Tax=Clostridiales RepID=B8I5Q5_CLOCE Length = 466 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 156/464 (33%), Positives = 253/464 (54%), Gaps = 15/464 (3%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K F C+ CG P+W G+C C WNT E + +N++ S A + + Sbjct: 10 KNKTVFKCSNCGYVSPKWVGRCPECDNWNTFEEREI-------QNQKNSRSASARITKPL 62 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 +L+ + R TG EF+RV+GGG+V S +I PGAGKSTLLLQ +A + Sbjct: 63 VRLTQVKAGNSDRIVTGINEFNRVMGGGIVKDSITIITAKPGAGKSTLLLQVAGDVASKG 122 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPT-DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 +K LY +GEES Q+ RA R+ D + + S+ S++ + + + P L+++DSIQ Sbjct: 123 LKVLYASGEESESQIKSRADRIFNKIEDGVWVYSDNSMDNVLNVVSQVDPDLLIVDSIQT 182 Query: 182 MHMADVQSS-PGSVAQVRETAAYLTRFAKT--RGVAIVMVGHVTKDGSLAGPKVLEHCID 238 + S GS Q E A L + AK R A+ +VG + K +AG + LEH +D Sbjct: 183 FILEGFPGSRAGSPTQTMECANELLKLAKDPVRPRAVFLVGQMNKSEEIAGLRALEHLVD 242 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD--EVTS 296 ++LDGD + R L KNRFG+ E G F+MTE GL + NPS F++ D E S Sbjct: 243 TVLILDGDNEEELRGLSVSKNRFGSTWERGYFSMTENGLESIDNPSEYFMTSRDKNEKVS 302 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 G ++ VV +G+RP++VEI++LV + P R+ + + +L L+++L + G + + D+ Sbjct: 303 GCALTVVKDGSRPIIVEIESLVSKTYTPYPSRIGECVRREQLNTLISILEQRGRISLYDK 362 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DV + GG+K E + +L++++++VSS+ D+ +P D +VGL GE++ VPS + RI Sbjct: 363 DVVIKTTGGLKFKEPAVNLSIIMSIVSSVYDKEIPNDTAFISDVGLTGELKKVPSLELRI 422 Query: 417 SEAAKHGFRRAIVPAANVPKK-APEGMQIFGVKKLSDALSVFDD 459 E + GF V + + + +++ VK + + + + Sbjct: 423 RELDRRGFGHVYVAKNALIRSLDIKNIEVHEVKSIQEVIGMVFK 466 >UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium jeikeium RepID=Q4JXK0_CORJK Length = 454 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 173/449 (38%), Positives = 253/449 (56%), Gaps = 16/449 (3%) Query: 22 QGQCSACHAWNTITEV--------------RLAASPMVARNERLSGYAGSAGVAKVQKLS 67 G+C C W ++ E R G G A Q ++ Sbjct: 1 MGRCPQCGEWGSLEERDARSLGLGAMGLAGVAGPGGSARRRGGGRGSGGLVPGASAQPVT 60 Query: 68 DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK-TL 126 + TG E DRVLGGG+VPGSA+L+ G PG GKSTLLL+ A++ L Sbjct: 61 QVDPTIAKHRPTGIGELDRVLGGGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVL 120 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD 186 +T EES+ QV RA R G D L + SE +E + P+L+++DS+Q M Sbjct: 121 ILTAEESVGQVRHRAERTGALHDKLYLASENDLENGLAQVDALNPELIIVDSLQTMQATG 180 Query: 187 VQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGD 246 V+ G VAQ R + LT AK G ++ VGHVTK+G++AGP+ +EH +D + +GD Sbjct: 181 VEGVAGGVAQTRAVTSTLTTLAKMSGTPVIAVGHVTKEGTVAGPRTIEHLVDVVLNFEGD 240 Query: 247 ADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEG 306 S R LR KNRFGA +E+G F T G++EV++PS +FL E +G++V VV +G Sbjct: 241 KHSSMRFLRGIKNRFGATDEVGCFEQTAHGIQEVADPSGLFLHHRTESVTGTAVTVVMDG 300 Query: 307 TRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGV 366 R ++ E+Q L +S NP+R G++ +R++++LAVL GL +AD++V+ VGG+ Sbjct: 301 RRAMVGELQTLALNSEFKNPKRYMTGMDASRVSMVLAVLSERCGLPLADKEVYAATVGGM 360 Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 K+ E SADLA LA+ S+ + PLP L+ GEVGL GE+R +P +R++EA + GF Sbjct: 361 KILEPSADLATGLALASTAKRSPLPLGLIALGEVGLGGEVRRIPQLTQRLAEAHRLGFHT 420 Query: 427 AIVPAANVPKKAPEGMQIFGVKKLSDALS 455 A+VP N +AP+GM++ V L A++ Sbjct: 421 ALVPK-NCHYEAPKGMKVKEVSTLCQAVN 448 >UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1c RepID=D1V789_9ACTO Length = 507 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 201/465 (43%), Positives = 275/465 (59%), Gaps = 18/465 (3%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 F C+ECGA+ RW G+C C AW+T+ + A P A A + + +++ Sbjct: 46 FRCSECGAESIRWAGRCPRCQAWSTLEAQK--APPRRAAVAGSGATAPATVTTPAKPVTE 103 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLY 127 + R STG E DRVLGGGVVPG+ IL+ G PG GKSTLLL+ + AQ + L Sbjct: 104 VDPSPAARRSTGVDELDRVLGGGVVPGAVILLAGEPGVGKSTLLLEVAARSAQAGHRALV 163 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 VTGEES+ QV +RA R G +L + +ET + + EE QP L+V+DS+Q + A V Sbjct: 164 VTGEESVAQVRLRAGRTGTLHADLWLAAETDLGALLGHVEEVQPTLLVVDSVQTISAAGV 223 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 G V QVRE AA L R AK G+A ++VGHVTKDGS+AGP++LEH +D + +GD Sbjct: 224 DGVAGGVTQVREVAAALIRAAKALGLATILVGHVTKDGSVAGPRLLEHLVDVVLHFEGDQ 283 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE--VTSGSSVMVVWE 305 + R +RS KNR+G +E+G F M E G+ +++PS +FLSRG G V V+ E Sbjct: 284 QTALRMIRSVKNRYGPTDEVGCFEMNENGIWGIADPSGLFLSRGATASAVPGVCVTVMVE 343 Query: 306 GTRPLLVEIQALVDHSMM----------ANPRRVAVGLEQNRLAILLAVLHRHGGLQ-MA 354 G RPL+ E+QALV PRR GL+ +R+A++ AVL + G + Sbjct: 344 GRRPLVAEVQALVAPQSYGRGGAGAPAPPPPRRAVSGLDGSRVAMITAVLQKRSGFGMLG 403 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D+F VGGVK+ E +ADLA+ LAMVSS +DR +P DL+ GEVGL GEIR V + Sbjct: 404 GADIFTASVGGVKLHEPAADLAVALAMVSSAQDRGVPSDLIALGEVGLTGEIRSVSGIER 463 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 R++ AA+ GFRRA+VP + PEGM + L+ A++ D Sbjct: 464 RLAAAARLGFRRALVPR--LSGLVPEGMTVTEATDLNAAIANMYD 506 >UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacteria RepID=A1SXY3_PSYIN Length = 470 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 189/472 (40%), Positives = 282/472 (59%), Gaps = 18/472 (3%) Query: 1 MAK-APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA-----RNERLSGY 54 MAK K A+VC++CGA+Y +WQGQC C AWNTITE R A+S + + +GY Sbjct: 1 MAKAKTKIAYVCSDCGANYQKWQGQCGECKAWNTITEFREASSTTKSVNAAVTRNKNAGY 60 Query: 55 AGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 G+ VQ++S + +E R STG E DRVLGGG+ GS +LI G+PG+GK+TLL + Sbjct: 61 TGALSNG-VQRISGVQIENATRVSTGLSELDRVLGGGITLGSVVLISGDPGSGKTTLLTK 119 Query: 115 TLCKLAQQMKTLYVTGEESLQQVAMRA-HRLGLPTDNLN-MLSETS-IEQICLIAEEEQP 171 ++Q M TLYVT EESL Q A R RL L + N +LS+T IE I E Sbjct: 120 VAEVMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNFLLSDTDCIEDIVDQCLENNV 179 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 + ++ DSIQ + + G V QV+ A L R K G+ +++VG V K+ +AGP+ Sbjct: 180 RFLIADSIQAFESNQAEGTAGGVTQVKICAKILNRLCKQHGITLILVGQVNKNSQMAGPQ 239 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG 291 L+H ID ++ ++ + D+ R LR+ KNRFG ++G+F MTE+G+ V NPS +FLS Sbjct: 240 TLKHIIDTAIHIEVN-DASVRILRADKNRFGDTEQVGIFQMTEKGMFSVDNPSRLFLSGS 298 Query: 292 DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGL 351 +E GS++ V+ +G R LL+EIQAL R +G+ +RL+++ AVL +HGG+ Sbjct: 299 EEHFEGSAISVIKDGARNLLIEIQALATEVEGEKSIRNCIGISYSRLSLITAVLKKHGGI 358 Query: 352 QMADQDVFVNVVGGVKV--TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPV 409 + D+ +++VGG+K+ +ETS D+A++ A++SS+ +P+PQD V GE+ L GEIR + Sbjct: 359 RTY-YDINISLVGGLKMSDSETSTDMAVMAALLSSINSKPVPQDSVFIGEIALTGEIRQI 417 Query: 410 PSGQERISEAAKHGFRRAIVPAANVPKK----APEGMQIFGVKKLSDALSVF 457 P R+ EA HG ++ +PA K +G I +K + + + Sbjct: 418 PQIVPRVREALSHGKKQIYIPAVAYHKSMQQFVKKGQSIHPLKNIKELIEAL 469 >UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312A2 Length = 466 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 196/454 (43%), Positives = 270/454 (59%), Gaps = 18/454 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGY-----A 55 MA+ P VC++CG + RW G+C C AWNT+ E + A + Sbjct: 1 MAR-PTTVHVCSDCGHEALRWAGRCPGCGAWNTLVEEVRSGGSNGAGGAGRGARAGVGGS 59 Query: 56 GSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT 115 +L ++ E+ R TG E DRVLGGG+VPGS +LIGG+PG GKSTL Sbjct: 60 RGGTAVAPVRLGEVQASEVERLPTGIGELDRVLGGGIVPGSLVLIGGSPGIGKSTLTTMA 119 Query: 116 LCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLM 174 + L KTLYV+ EES Q+ +RA RL + +++ET + + E E+P + Sbjct: 120 VANLTGAGRKTLYVSAEESAAQIKLRAERLPGAALEIPVIAETDLGAVLATLERERPDVC 179 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDS+Q +H A++ +PGSV QVRE A + R AK +A+++VGHVTK+G+LAGP+VLE Sbjct: 180 VIDSVQTLHAAELTGAPGSVGQVREVAGEIMRVAKQHRIAVLLVGHVTKEGALAGPRVLE 239 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +DC + +G+ + +RTLR+ KNRFG+ +E GVF M + GL EV + SA F+ Sbjct: 240 HLVDCVLQFEGERERTYRTLRALKNRFGSTSEAGVFEMRQGGLVEVLDASARFVGE-ATH 298 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 GS V+ EG+RPLLVE+QALV S + PRRV G+++NRLA++LAVL RH G+ + Sbjct: 299 APGSVVLCAMEGSRPLLVEVQALVSPSELVPPRRVVSGIDRNRLALVLAVLTRHAGVAVG 358 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD----------LVVFGEVGLAG 404 DVFVNVVGGV+V E ADLA+ LA+ S+ R L L FGE+GL G Sbjct: 359 SADVFVNVVGGVRVDEPGADLAVALAVASAARGVALRGGNGADGEDGPPLACFGELGLTG 418 Query: 405 EIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA 438 E+R V + R +EAAK G + P A ++A Sbjct: 419 ELRSVAHPERRTAEAAKFGLGTIVTPEAGTLRRA 452 >UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C9Y705_9BURK Length = 665 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 206/372 (55%), Positives = 263/372 (70%), Gaps = 8/372 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K + CNECG P+W G+C C+AWNT+ E ++ + +A A Sbjct: 1 MAK-DKTIYTCNECGGTSPKWLGKCPHCNAWNTLIESVASSD-----GPAKNRFASLAKT 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A+V LSDI +++ R TG +E DRVLGGG+V G +LIGG+PG GKSTLLLQ L L Sbjct: 55 AEVTVLSDIEAQDVERTPTGHEELDRVLGGGMVEGGVVLIGGDPGIGKSTLLLQALDSLQ 114 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + TLYVTGEES QVA+R+ RLGL + +L+E +E+I E +P + VIDSI Sbjct: 115 RSGKNTLYVTGEESGAQVALRSRRLGLDHSQVKVLAEIQLEKILATLEANRPDVAVIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+PGSVAQVRE AA+LTR AK G AIV+VGHVTK+G+LAGP+VLEH +D Sbjct: 175 QTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDT 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD S+FR +R+ KNRFGAVNE+GVFAMTE+GL+ VSNPSAIFLS+ E GS Sbjct: 235 VLYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHAEPVPGSC 294 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 VMV EGTRPLLVEIQALVD +PRR++VGL+++RLA+LLAVLHRH G+ DQDVF Sbjct: 295 VMVTLEGTRPLLVEIQALVDM-GGPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVF 353 Query: 360 VNVVGGVKVTET 371 +N VGGV++ E Sbjct: 354 INAVGGVRIGEP 365 >UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B2S0C8_BORHD Length = 466 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 162/448 (36%), Positives = 259/448 (57%), Gaps = 14/448 (3%) Query: 1 MAKA-PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MAK K + C CG +W G+C C +W ++ S G S Sbjct: 1 MAKKKDKEIYKCLNCGYKSLKWLGKCPECFSWESLEHYVEPKSS--------YGANLSKS 52 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 +++ L D + R+ TG +EFDRVLG G+V GSAILI G PG GKST LLQ L Sbjct: 53 KSEIFSLKDFKQVDNVRYLTGIEEFDRVLGAGIVIGSAILISGEPGIGKSTFLLQISSIL 112 Query: 120 A-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 + LY+ GEES+ Q+ +RA+RL + +D L + +E ++ + + + MV+DS Sbjct: 113 SLDGKNVLYLAGEESIPQIKLRANRLKISSDIL-ITNEIDVDALIEMLANIELDFMVVDS 171 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ +VQ S G VAQ++ L +AK + + + +VGHVTKDG LAGPK++EH +D Sbjct: 172 IQTLNSREVQGSLGGVAQLKHCVYKLVEWAKGKNITLCLVGHVTKDGILAGPKIIEHMVD 231 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +A R LR+ KNRFG +NE+G+F MT GL E+ +PS+IFL R +E++SG Sbjct: 232 SVFYFE-EAKKSLRMLRATKNRFGTINEIGIFEMTSLGLVEIKDPSSIFLERKEEISSGI 290 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ ++ EG+R L VEIQAL+ + M R + ++ +++ +LAV+ ++ L + D+ Sbjct: 291 AIGIINEGSRVLFVEIQALITRTGMNISRIFSEKIDSKKISRILAVISKYLNLNFNNDDI 350 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +VNV GG+++ + +LA+L+A+ S+ + + Q+L+ GE+ L+GEI+ + + ++ Sbjct: 351 YVNVSGGLRIDDVEIELAVLVALFSAKTNVIISQELIFTGEISLSGEIKVSSNIESKVIA 410 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFG 446 A K GF+ AN+ G + G Sbjct: 411 ALKAGFKSVF--GANLRDNHYNGYESIG 436 >UniRef50_D1Y454 DNA repair protein radA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y454_9BACT Length = 451 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 185/460 (40%), Positives = 269/460 (58%), Gaps = 15/460 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + + C ECG G+C C AW T+ E A M A AG Sbjct: 1 MAKKDGKRYCCIECGYVSLVPSGKCPRCGAWGTLEEEIPVAPSMAA-----------AGT 49 Query: 61 AKVQKLSDISLEELP-RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 AK+ DIS E P R ++GF E DRVLGGG VPG +L+GG PG GKSTLLLQ + Sbjct: 50 AKILTPVDISTLEPPGRLASGFGELDRVLGGGWVPGGVVLLGGQPGIGKSTLLLQVCGHI 109 Query: 120 -AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 A + LY++GEES Q+ +RA RL + D L++ T I+ +A++ L+V+DS Sbjct: 110 SAAGRRVLYISGEESPSQLGLRAKRLKILHDGLDVCCHTVIDDALALAKDHS--LIVVDS 167 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q M + + PG+ QVR TA +AK GV +V+VGH+TK+G +AGP +LEH +D Sbjct: 168 VQAMRTSQAEGWPGTPTQVRATAQVCVNYAKEHGVPMVLVGHITKEGRIAGPMLLEHMVD 227 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 ++ D S +RTLR+ KNR+G +E+G+F M GL EV +PS ++ +R D SG Sbjct: 228 AVIMFADDNSSVYRTLRASKNRYGGTDEMGIFEMRSDGLTEVPDPSYLYWNRSDGAVSGV 287 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 + V+ EG+RPL+ EIQ L S A P+R +GL N++ +LLAVL L D+ Sbjct: 288 VMTVIMEGSRPLVAEIQTLASESSFAYPKRAGIGLGANKIGMLLAVLQSRCALPSLRDDI 347 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + NV GG+++ + ADLAL +M S+L + + + + GEVGLAGE+RPV +R+ E Sbjct: 348 YCNVAGGLEIHDPGADLALAASMASALTGKNVLSECCLIGEVGLAGEVRPVSGLAQRLRE 407 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 AA+ GF+RA+V + + +++ V +S+AL+ + Sbjct: 408 AARLGFKRAVVSSREEKPQLDAEIELIRVLSVSEALARAN 447 >UniRef50_C7RFC7 DNA repair protein radA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RFC7_ANAPD Length = 456 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 160/459 (34%), Positives = 259/459 (56%), Gaps = 13/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K A+ C CG W GQC C W ++ EV + +++ S Sbjct: 1 MAKAKK-AYECTSCGHTQGVWAGQCPECGKWGSMHEVIV--------DKKASKQNIVVED 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +KL I+L+E R + + EFDR +GGG+V S ++ PGAGKSTLLLQ A Sbjct: 52 KNAKKLKSIALDESERIKSTYSEFDRAVGGGLVRDSVSILTARPGAGKSTLLLQLSKSYA 111 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRL-GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 + +K +Y++GEES Q+ RA R+ ++N+ +LS S++ + ++ +DS Sbjct: 112 DKGLKVIYISGEESESQIKSRADRIMSELSENIWILSTNSMDLAIKEIKNVDADIVFLDS 171 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAK--TRGVAIVMVGHVTKDGSLAGPKVLEHC 236 IQ +A++ + GS Q E A AK R A++M+GH+TK G +AG + LEH Sbjct: 172 IQTFSLAELDNKQGSPTQTIEVANKAVDIAKDSERKRAVIMIGHMTKKGEMAGLRTLEHL 231 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D ++LDG+++ R L S KNRFG E+G+F+M E GL E++NPS F++ E Sbjct: 232 VDTVLVLDGESEEDLRILTSTKNRFGRTGEIGLFSMDEDGLNEITNPSEYFITERSEDIE 291 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS++ V EG+R L VEI++LV S M P+R+ L ++ L L+++L GL + D Sbjct: 292 GSAISVTKEGSRLLEVEIESLVSKSFMPYPQRIGDSLRRDDLNTLISILQERAGLNLYDY 351 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 +V + GG+K++E S +LA+++++ SSL P+ V EVGL GE++ VP ++R+ Sbjct: 352 NVIIKTTGGIKLSEPSVNLAIMVSIASSLMKHPVSDKSVFIAEVGLTGELKKVPQIKQRL 411 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 E + G+++A V ++ K + ++I+ + + + Sbjct: 412 KEIERLGYKKAFVAKNSIDSKDFKELKIYQLANIRQVID 450 >UniRef50_C5CHP4 DNA repair protein radA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHP4_KOSOT Length = 442 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 164/443 (37%), Positives = 264/443 (59%), Gaps = 13/443 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M++ +R +VC+ CG + P W G+C +C WN+ + + ++ ++ V Sbjct: 1 MSRKKRRIYVCDACGYESPAWFGRCPSCGTWNSAISMSVDNHAIIETSKE---------V 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A ++ LSDI +E+ R TG EFDR LGGGVVPGS +L+ G PG GKSTL+LQ ++ Sbjct: 52 ANIRSLSDIKVEDSHRLFTGLNEFDRALGGGVVPGSVVLVSGEPGIGKSTLMLQVAERMV 111 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGL-PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 K LY++GEES +Q+ +RA RL L T+N+ + + T ++ + + L++ DS+ Sbjct: 112 SYGKVLYISGEESQRQIKLRARRLKLGKTENIEVSATTELDF-LEKLDLKDYSLLIFDSL 170 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + +++V S PGS QVRE A ++ AK VA V+VGHVTK G +AGPK++EH +D Sbjct: 171 QTLRLSNVASLPGSFVQVRECANFVVSKAKESNVAAVIVGHVTKGGQIAGPKLVEHIVDT 230 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + D + S +R LR+ KNRFG +E+ VF MT GL EV + S +F+ V G+ Sbjct: 231 VLYFDTNK-SGYRFLRTVKNRFGPSDEIAVFEMTSDGLAEVPDISDLFVKD-FIVAPGNV 288 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG++ LVE+Q+LV + PRR+A G+ +R+ ++ AVL + + + + D++ Sbjct: 289 ITAVSEGSKTFLVEVQSLVSKPIYGTPRRLATGVPIDRVLLVAAVLSKRANIPLDNLDLY 348 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG++V + DLA+ L+++SS ++ +PQ + FGE+GL G +R V +RI Sbjct: 349 INIAGGIQVDDPGTDLAIALSLLSSFTNKAVPQGMAAFGEIGLDGTVRNVTGSSKRIDRL 408 Query: 420 AKHGFRRAIVPAANVPKKAPEGM 442 + GF + P N+ + + Sbjct: 409 KESGFSEVLSPNGNIRIQNIADL 431 >UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga lettingae TMO RepID=A8F5C2_THELT Length = 441 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 157/456 (34%), Positives = 250/456 (54%), Gaps = 24/456 (5%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K F+C CG + +W G+C C WNT E + + + Sbjct: 2 KEKERFICKSCGYESIKWFGKCPQCGEWNTAVE---------------ATSKPLERIVDL 46 Query: 64 QKLSDI-SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ- 121 L D+ R +TGF E D L G+VPG +L+GG PG GKSTL L+ ++ Sbjct: 47 VNLKDVLKSVNSTRLTTGFTELDASLCSGIVPGQVLLLGGEPGVGKSTLALEICAWFSKN 106 Query: 122 QMKTLYVTGEESLQQVAMRAHRLG-LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K+LYV+ EES+ Q+A+RA RL D + + S+ I+ + I E+ L+V+DS+Q Sbjct: 107 GYKSLYVSAEESVDQLAIRARRLACENLDGITVCSDNDIDSVLQIINED-YSLIVVDSLQ 165 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 M+ +V + PGSV QVR A + K + +++ H+TK G ++GPK++EH +D Sbjct: 166 TMYSEEVGTYPGSVVQVRVCAEKIISKCKELSIPSILIAHITKSGEISGPKLVEHLVDTV 225 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ + R LR KNRFG E+ VF M + GL+++ +P +F D+ G+ + Sbjct: 226 IYFEGEKTTELRILRVIKNRFGPSGEIAVFEMRDDGLKQLCDP--VFFDLTDQ-LPGNCL 282 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 V EG+R +V+IQALV S PRRV+ G + RL +L+A + +H L + DV+V Sbjct: 283 SCVIEGSRAFVVQIQALVSRSRSNMPRRVSNGFDMTRLLLLIATIGKHMRLPVESHDVYV 342 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NV+GG+++T+T+ D A++ A++SS+ ++P+ + V GEV L G I+PV + RI Sbjct: 343 NVLGGLRITDTAVDAAVVGAILSSMMEKPI-EKTSVIGEVSLDGRIKPVYRMRSRIDSLK 401 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 + G + IVP + V ++I ++ + D L V Sbjct: 402 RAGIQSVIVPKS-VDLSDKNLVKIDSLQDMGDVLGV 436 >UniRef50_A4SAK3 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAK3_OSTLU Length = 478 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 196/480 (40%), Positives = 281/480 (58%), Gaps = 36/480 (7%) Query: 5 PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQ 64 K A+VC ECG D +W GQC AC +W+T+ +A +P + G AG Q Sbjct: 3 TKTAYVCAECGEDSRQWLGQCPACKSWDTMK--AIALAPTSGGGAGKASAGGGAGARARQ 60 Query: 65 KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA---- 120 + + L E KE +RVLGGGVVPG IL+GG+PG GKST+LLQ L Sbjct: 61 TMPRMRLREEL-----GKEIERVLGGGVVPGGMILVGGDPGVGKSTILLQLAGLLGARGE 115 Query: 121 -------------QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 LY +GEES++QVA RA R+G+ + + + S T +E I Sbjct: 116 EREGEEDGANESIAAGGVLYASGEESVEQVAGRAERMGIDPNGIYLYSATRLENILEAVS 175 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 +P +V+DSIQ + + D SPGSV+QVRE A L AKT G+ + ++GHVTK G + Sbjct: 176 TLKPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKTTGMPVFIIGHVTKSGDI 235 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+VLEH +D + L+GDAD R LR HKNR+G+ +E+GVF M++ G++ V++PSA+F Sbjct: 236 AGPRVLEHIVDVVLYLEGDADRAVRILRGHKNRYGSTDEVGVFQMSDGGMKPVASPSALF 295 Query: 288 LSRG-DEVTSGSSVMVVWEGTRPLLVEIQALVDH--------SMMANPRRVAVGLEQNRL 338 L ++ V +G+RP ++E+QAL + M A P R AVGL R+ Sbjct: 296 LGERILSPDVSAAPTVTVQGSRPFMLEVQALTNERADAGEGGGMSAPPIRTAVGLRFERM 355 Query: 339 AILLAVLHRH-GGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 +LLAVL + G ++ DVF+N+VGG+K+ + S D+A+ LA+ SS ++PLP D+ F Sbjct: 356 QLLLAVLAKFVLGRRLQKHDVFINIVGGMKLEDPSTDVAVALAIASSFVEKPLPPDMCFF 415 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--GMQIFGVKKLSDALS 455 GEVGL GE+RPV + RI+EAA GF+R ++P A + + G+++ L+DAL Sbjct: 416 GEVGLGGELRPVMQAERRIAEAATMGFKRVLLPEAGSSPEMGKKTGIELVRCNTLADALE 475 >UniRef50_B7FVI7 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7FVI7_PHATR Length = 500 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 251/494 (50%), Gaps = 66/494 (13%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARN--------------- 48 + R +C CG+++ +W G+C C WNT+ E + P A Sbjct: 7 STARIHICGNCGSEFVKWMGRCPTCREWNTLQEHAVRREPASASRPVFGTNISSSGARPA 66 Query: 49 ERLSGYAGSAGVAKVQKLSDI------SLEELPRFSTGFK-------EFDRVLGGGVVPG 95 L G GS G +++D+ S L R + + E + VLGGG++PG Sbjct: 67 SWLDGIPGSLGSNAPVRITDLVSSDDGSTNTLSRLHSSQRVTIPNDDELNVVLGGGIMPG 126 Query: 96 SAILIGGNPGAGKSTLLLQTLCKLAQ---------------------------QMKTLYV 128 S LIGG+PG GKSTL+LQ +A YV Sbjct: 127 SLNLIGGDPGVGKSTLMLQIAGAVASLAIPTPGIGMGLPDSNNTRTKSSTDGTGGPVWYV 186 Query: 129 TGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQ 188 +GEE+ Q+A RA RLG+ L +L ET ++ +C P L+VIDSIQ M Sbjct: 187 SGEENPDQIASRASRLGILQSELWLLGETHVDTLCQQVVVHAPALIVIDSIQTMVCDSGG 246 Query: 189 SSPGS-VAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 SS + QVRE A L R AK+ + I +VGHVTK+G +AGP+ +EH +DC + L+G A Sbjct: 247 SSSAGGITQVRECVALLLRLAKSTRIPIFLVGHVTKNGDVAGPRTVEHMVDCVLYLEGSA 306 Query: 248 DS---RFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG--DEVTSGSSVMV 302 + R LR+ KNRFG+ +E+GV+ MT L VS+PS++FL+ E G ++ + Sbjct: 307 HNDGLNLRMLRASKNRFGSSDEVGVYEMTAGRLLPVSDPSSLFLAHRVTQEDAEGCAIAI 366 Query: 303 VWEGTRPLLVEIQALVDH--SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG R + VE+QAL S RR G+ +RL +L+ VL + G+ M QDV++ Sbjct: 367 ALEGMRAMTVEVQALATPSGSTTGYGRRTVEGIAMSRLNLLIGVLQKRCGVFMFKQDVYI 426 Query: 361 NVVGGVKVT---ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 NV G +++ + DL + +A+VSSL + D GEVGL GE+R V + +R++ Sbjct: 427 NVAGRIRLDRGEGNAVDLGVAVALVSSLATIAVRSDTAFVGEVGLLGELRSVAALPKRLA 486 Query: 418 EAAKHGFRRAIVPA 431 EA + GF R I P Sbjct: 487 EARRMGFSRVITPR 500 >UniRef50_C1N8F6 DNA repair protein-related n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N8F6_9CHLO Length = 720 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 197/574 (34%), Positives = 288/574 (50%), Gaps = 121/574 (21%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLA--------------------- 40 +KA K+ ++C +CG DY ++ G+C C AW + +A Sbjct: 106 SKAAKQRYLCQDCGEDYNQFHGRCPNCKAWESFKTFTIAPSGGGGKAPGGGAGARALASA 165 Query: 41 ----ASPMVARN-------------------ERLSGYAGSAGVAKVQKLSDISLEELP-- 75 +SP+ N S A ++L+ + + Sbjct: 166 TETASSPVTTSNVLPASSRRRNAAAADDAFAASASRSGWVEASAAPRRLAAVLAPDATGK 225 Query: 76 -------RFSTGFK-EFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM---- 123 R T E +RVLGGG+VPG+ +L+GG+PG GKSTL+LQ L ++ Sbjct: 226 NVRGARLRVPTELGAEVERVLGGGIVPGALMLVGGDPGVGKSTLVLQIAGLLGERALKNA 285 Query: 124 -----------------------------KTLYVTGEESLQQVAMRAHRLGLPTDNLNML 154 +YV+GEES++Q+A RA RLG+ D L + Sbjct: 286 NAAKEDAEDAEDAEDGTSTVIASASPPPPSVMYVSGEESVEQLAGRAERLGVHPDGLVVY 345 Query: 155 SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 S T +E I E+P +V+DSIQ + + D SPGSV+QVRE A L AK+ G+ Sbjct: 346 SATRLEAILEAVVRERPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKSAGMP 405 Query: 215 IVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTE 274 ++GHVTK G +AGP+VLEH +D + L+GDAD R LR HKNR+G+ +E+GVF M + Sbjct: 406 TFIIGHVTKSGDIAGPRVLEHIVDVVLYLEGDADRAVRVLRGHKNRYGSTDEVGVFEMID 465 Query: 275 QGLREVSNPSAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDH------------S 321 GLR V +PSA+F+ ++ V +G+RP ++E+QAL Sbjct: 466 AGLRPVPSPSALFMGERVLTPDVSAAPTVTVQGSRPFMLEVQALCAERAGADDAENGGGG 525 Query: 322 MMANPRRVAVGLEQNRL---AILLAVLHRH-GGLQMADQDVFVNVVGGVK---------- 367 MMA R AVG++ R+ ++LLAVL + G ++ DVFVNVVGG+K Sbjct: 526 MMAPAVRTAVGIKPERMQARSLLLAVLAKFVLGSRVHRHDVFVNVVGGLKARSISHWSPY 585 Query: 368 -----VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 + + SAD+A+ LA+ SS +R LP D+ FGEVGL GE+RPV + R+ EAA Sbjct: 586 DRVGALEDPSADVAVALAIASSFVERALPADMAFFGEVGLGGELRPVAQAERRLQEAATM 645 Query: 423 GFRRAIVPAANVPKKAPE--GMQIFGVKKLSDAL 454 GF R ++PAA K A + G+++ L++AL Sbjct: 646 GFTRVLMPAAGSTKDAGKRQGVEVVLCNTLAEAL 679 >UniRef50_B5W8S1 DNA repair protein radA n=2 Tax=Arthrospira RepID=B5W8S1_SPIMA Length = 573 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 144/306 (47%), Positives = 203/306 (66%), Gaps = 2/306 (0%) Query: 149 DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFA 208 +L +L ET +E I E +P L +IDSIQ ++ A + S+PGSVAQVRE + L + A Sbjct: 244 ADLFLLPETDLEVILRELESLKPTLAIIDSIQTIYFASLTSAPGSVAQVRECTSALMQVA 303 Query: 209 KTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELG 268 K + +++VGHVTKDGSLAGP+VLEH +D + +GD + R LRS KNRFGA +E+G Sbjct: 304 KRENITLLIVGHVTKDGSLAGPRVLEHLVDTVLYFEGDRFASHRLLRSMKNRFGATHEIG 363 Query: 269 VFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRR 328 VF M GL+EVSNPS +FL D+ + G++ +V EGTRP++VEIQALV + + RR Sbjct: 364 VFEMVSHGLQEVSNPSELFLGNRDDCSPGTATIVSMEGTRPIVVEIQALVSPASYGSARR 423 Query: 329 VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDR 388 G++ +RL +LAVL + G+ ++ D V VGG+KV E +ADL + +A+V+S RDR Sbjct: 424 TTTGVDSSRLMQILAVLEKRVGIPLSKLDAIVASVGGLKVDEPAADLGVAIAIVASFRDR 483 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVK 448 + ++ GEVGL G++RPV + R+ EAAK GF+RAIVP P+ GMQI V Sbjct: 484 LVDPRTILIGEVGLGGQVRPVSQLELRLREAAKLGFKRAIVPKGQKPEDL--GMQILPVG 541 Query: 449 KLSDAL 454 ++ DA+ Sbjct: 542 RVIDAI 547 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 64/153 (41%), Positives = 84/153 (54%), Gaps = 12/153 (7%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPM------------VARNERL 51 P+ +VC ECGA++ ++ G+CS C AWN++ E + SP E Sbjct: 3 KPRTLYVCRECGAEFSQYFGRCSNCQAWNSLVEQVVEPSPTPSLQRFSWSELGSGLTEDT 62 Query: 52 SGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 KLS IS + R +G+ E DRVLGGG+VPGS +LIGG PG GKSTL Sbjct: 63 VNKPNQGQPRLSFKLSQISDQTQSRIPSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTL 122 Query: 112 LLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL 144 LLQ L+ + LYV+ EES QQV +R+ RL Sbjct: 123 LLQVANSLSHHARVLYVSAEESGQQVKLRSQRL 155 >UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltransferase n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF42_PETMO Length = 423 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 146/435 (33%), Positives = 248/435 (57%), Gaps = 18/435 (4%) Query: 28 CHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRV 87 C+ + E A + N ++ D L + T F+E D V Sbjct: 2 CNELESAVEYNTADVTIDTGNIKVPDIV----------FLDQELPPAKKIPTNFQEIDNV 51 Query: 88 LGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQQMKTLYVTGEESLQQVAMRAHRLGL 146 L GG+V G+ L+ G+PG GKSTLL Q + + YV+GEES +QV R +RL + Sbjct: 52 LNGGLVEGAVYLLSGDPGIGKSTLLAQIAKSIQTAEGYIFYVSGEESTEQVVQRFNRLEI 111 Query: 147 PTDNLNMLSETSIEQICLIAEEEQPK--LMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 N+ ++ E +++ I E+ K ++ IDS+Q + + + SSPGS+ QVRE+ + Sbjct: 112 KNKNIGLIFENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGSILQVRESTRKM 171 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAV 264 +AK + + +V+VGHV K+G++AGPKVLEH +DC + ++ + S R L+ KNR+G Sbjct: 172 VEYAKKKNIPVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPT 231 Query: 265 NELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMA 324 +E+ +F +T++GL+ + N ++ FLS SG+++ +V G + L +EIQALV + + Sbjct: 232 DEVVLFEITQKGLKPIDNINSFFLSDYSNE-SGNTLTIVKVGQKLLPIEIQALVSNPVYG 290 Query: 325 NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSS 384 +PRRV G+ +RL +++AVL + L + +D+FV+ GG+++ ++S D+A+ L+++SS Sbjct: 291 SPRRVTSGIPLDRLLMIIAVLSKKLKLPLESKDIFVSSAGGLRINDSSMDVAIALSLISS 350 Query: 385 LRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQI 444 + D PL + FGE+GL G IR +P ++R+ + K GF ++P P+K I Sbjct: 351 IFDTPLSSSTIAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLSPRKNS----I 406 Query: 445 FGVKKLSDALSVFDD 459 + + D + +F Sbjct: 407 IVAESVKDLIKLFKK 421 >UniRef50_C9M763 DNA repair protein RadA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M763_9BACT Length = 441 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 174/415 (41%), Positives = 246/415 (59%), Gaps = 7/415 (1%) Query: 46 ARNERLSGYAGSAGVAKVQKLSDISLEELP-RFSTGFKEFDRVLGGGVVPGSAILIGGNP 104 A + G +V I P R +G E DRVLGGG VPG +L+GG P Sbjct: 2 AEERPTVVQNRAGGAPRVLTPESIRDIPAPVRTPSGIGELDRVLGGGWVPGGVVLLGGQP 61 Query: 105 GAGKSTLLLQTLCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQIC 163 G GKSTLLLQ + A K +YV+GEES Q+ +RA RLG+ D L + T I++ Sbjct: 62 GIGKSTLLLQVCGAMTAAGSKVIYVSGEESAGQLGLRAARLGVLHDGLEVCCHTVIDEAL 121 Query: 164 LIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTK 223 + + L+V+DS+Q M D PG+ QVR A FAKT GV V+VGH+TK Sbjct: 122 QLVSDH--ALLVVDSVQAMRAQDEDGWPGTPTQVRAVAQRCLDFAKTSGVPTVLVGHITK 179 Query: 224 DGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNP 283 +G LAGP +LEH +D ++ G+ S +RTLR+ KNR+G +ELG+F M +GL EVS+P Sbjct: 180 EGRLAGPMLLEHMVDTVIMFSGEKTSLYRTLRASKNRYGGTDELGIFEMGGEGLVEVSDP 239 Query: 284 SAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 S ++ +R D SG ++ V+ EG+RPL+ EIQAL S A PRR+ +G+ N+L +LLA Sbjct: 240 SYLYWNRSDSTVSGVAMTVLLEGSRPLVAEIQALAAQSEFAYPRRMGMGVGANKLQLLLA 299 Query: 344 VLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLA 403 VL GL D++ NV GG++V + +ADLA+ A+ S++ P+ D + EVGLA Sbjct: 300 VLESRCGLPAGKSDLYCNVAGGLEVRDPAADLAVAAALASAVSGVPIGPDCCLLAEVGLA 359 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEG-MQIFGVKKLSDALSVF 457 GE+RPV + R+ EA + GFRR I+ ++ K+AP G +++ + L D L Sbjct: 360 GELRPVTALGSRLKEAERLGFRRVII--SSREKEAPCGQLELIRLATLGDVLREL 412 >UniRef50_B5Y8V7 DNA repair protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8V7_COPPD Length = 407 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 134/420 (31%), Positives = 210/420 (50%), Gaps = 34/420 (8%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + K + C+ CG G+C C + T +A ER ++ + K Sbjct: 2 SEKSQYECSNCGYVSSVKLGRCPQCGQFGTFI-----VRKPIAEQERKVNFSYTKKPQKT 56 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 T E + VLGGG+ GS +L+GG PG GKSTL LQ L Sbjct: 57 TP-------------TFLPELNFVLGGGLKSGSVLLLGGEPGIGKSTLALQILGNA--DT 101 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 +YV+ EE+ +QV RA R+GL N+N++SE+ + + + L+ +DS+Q + Sbjct: 102 DAVYVSSEETREQVLERAERIGLR--NINVVSESDL----GAVDLDNYGLICVDSLQTIR 155 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 D+ +PGS A V+E A YL ++AK ++V HVTK+G +AGP+ +EH +D + L Sbjct: 156 FGDM-GAPGSPAMVKEIAGYLVKWAKESNGIALIVAHVTKEGVIAGPRTVEHMVDVVLYL 214 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD S R L+ KNRFG + + M GL PS + +S D +G + V Sbjct: 215 EGDRTSDKRLLKLVKNRFGPSTDQILLEMQSSGL----TPSEVEVSGLDRNQTGLVLSAV 270 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 GTR V++ ALV S P+R++ NRL +L AV+ ++ L + D++V++ Sbjct: 271 NTGTRFEFVQVHALVTDSYGQIPKRLSSRYPNNRLLLLTAVMQKYLRLPLYKYDIYVDLT 330 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR---PVPSGQERISEAA 420 V + D A++ A+ SSL++ P+ + +V+GEV L G+IR P + A Sbjct: 331 TDFFVNDYGVDAAIVAAVYSSLKEMPISGNTLVYGEVLLTGDIRSPHPETQLDRLVRGAQ 390 >UniRef50_D0N9B5 DNA repair protein radA n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9B5_PHYIN Length = 412 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 131/356 (36%), Positives = 190/356 (53%), Gaps = 52/356 (14%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRL---------AASPMVARNERLSGYAGSA- 58 F C CG + +WQGQCSAC W ++ + AAS R +R ++ ++ Sbjct: 39 FRCQNCGQSFVKWQGQCSACSHWGSVESSKPSEPLFRQSNAASFTKNRPKRSVAWSRTSH 98 Query: 59 -----GVAKVQKLSDISLEEL-PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 + +++++ L+ R +E + VLGGG+V GS L+ GNPG GKST Sbjct: 99 ETFEENPPRALRMNEVELDTFVERIQLPERELNWVLGGGLVAGSLTLVAGNPGVGKST-- 156 Query: 113 LQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----- 167 + LYV+GEES+ QV MRA RLG +D+L + SET+++ + + E Sbjct: 157 ---------ERGVLYVSGEESVLQVRMRAERLGSVSDSLFVASETNLDSVFQLLEGGSRR 207 Query: 168 ------EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV 221 +V+DSIQ ++ D+ S G+V QV+E L R AK+R V ++++GHV Sbjct: 208 AVGDEGYHGFGAVVVDSIQTVYAEDILSPAGTVNQVKECTLRLLRLAKSRNVPVILIGHV 267 Query: 222 TKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVS 281 TK G +AGPKVLEH +D V L+GD S R LR KNRFG +E+GVF MT++GL+ + Sbjct: 268 TKSGDIAGPKVLEHIVDTVVQLEGDPQSARRFLRCQKNRFGNTSEVGVFNMTDEGLQPLP 327 Query: 282 NPSAIFLSRGD--------------EVTSGSSVMVVWEGTRPLLVEIQALVDHSMM 323 NP F+S D E G SV + EG RP+ +EIQAL + + Sbjct: 328 NPLTAFVSSHDEDDENPETREETELEPLDGCSVTIAMEGKRPIPLEIQALANRTQY 383 >UniRef50_UPI0000382A4B COG1066: Predicted ATP-dependent serine protease n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382A4B Length = 305 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 112/248 (45%), Positives = 162/248 (65%) Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 + LYVTGEES QV +RA R+G L + +ET + + E +P L+V+DS+Q + Sbjct: 32 RRVLYVTGEESAGQVRLRAERVGALAPGLLLAAETDLATVLGHIEATEPDLLVVDSVQTI 91 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 A V+ +PG V+QVRE AA L AK R + +++VGHVTKDGS+AGP+ LEH +D Sbjct: 92 ASAQVEGAPGGVSQVREVAASLIAAAKARDLPVILVGHVTKDGSVAGPRTLEHLVDVVCQ 151 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +GD SR R +R+ KNR+G +E+G F +TE G+ +++PS +FLS G+ V V Sbjct: 152 FEGDRHSRLRLVRAVKNRYGPTDEVGCFDLTENGIVGLADPSGLFLSHTGAGVPGTCVTV 211 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EG RPL +EIQ+LV S + NPRR G++ +RLA++LAV+HRH G+++ DQDV+ + Sbjct: 212 TLEGRRPLALEIQSLVVPSSLTNPRRTTSGVDSSRLAMILAVMHRHAGVRLVDQDVYAST 271 Query: 363 VGGVKVTE 370 VGG + Sbjct: 272 VGGAQGDR 279 >UniRef50_B5AXB1 Protease (Fragment) n=171 Tax=cellular organisms RepID=B5AXB1_ECOLX Length = 191 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 159 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV Sbjct: 1 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 60 Query: 219 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR Sbjct: 61 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 120 Query: 279 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 338 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL Sbjct: 121 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 180 Query: 339 AILLAVLHRHG 349 AILLAVLHRHG Sbjct: 181 AILLAVLHRHG 191 >UniRef50_C1TS01 Putative uncharacterized protein (Fragment) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS01_9BACT Length = 222 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 100/220 (45%), Positives = 142/220 (64%), Gaps = 1/220 (0%) Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D +L GD S +RTLR+ KNR+G +E+G+F M E+GL V +PS ++ RGD+ G Sbjct: 1 DTVLLFSGDDGSPYRTLRATKNRYGGTDEVGLFQMGERGLNPVDDPSGLYWDRGDQSVPG 60 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 ++ VV EG+R L+ E+QAL + A PRR A G N+L +LLAVL + GL + D Sbjct: 61 VALTVVMEGSRALVAEVQALAASTSFAYPRRTARGTSVNKLHLLLAVLQKRCGLTSSGLD 120 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 V+VNV GG+ + + ADLAL L++ SS DR LP D + GEVGL GEIRPV +R+ Sbjct: 121 VYVNVAGGMDLRDPGADLALALSLASSAMDRALPSDCCLLGEVGLVGEIRPVGRTGQRLR 180 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 EAA+ GFR A+V +A ++AP GM + V+ L++A++ Sbjct: 181 EAARLGFRSAVV-SAREKEEAPRGMDVMAVRSLAEAMARL 219 >UniRef50_C1TLA8 Putative uncharacterized protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLA8_9BACT Length = 242 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 100/254 (39%), Positives = 138/254 (54%), Gaps = 13/254 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + +VC+ECG G+C C W T+ L V+ R SG Sbjct: 1 MAKKNEVRYVCSECGYVSLSPMGRCPGCGEWGTVEAEVL----SVSTEGRKSGS------ 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + S + L+ R +G E DRV+GGG V G +L+GG PG GKSTLLLQ LA Sbjct: 51 SPLSPRSILGLKPPKRLPSGIGELDRVMGGGWVEGGVVLLGGQPGIGKSTLLLQVCGNLA 110 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LYV+GEES QVA+RA RLG ++ L +L +E + L+VIDS+ Sbjct: 111 RSGSKVLYVSGEESASQVALRASRLGADSEGLELLCIADVEMALGSLNDHG--LVVIDSV 168 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q M PG+ +QVR TA AK++G+ +V+VGH+TK+G +AGP +LEH +D Sbjct: 169 QAMKDPGEGGWPGTPSQVRATAQRCIDTAKSKGIPMVLVGHITKEGRIAGPMLLEHMVDT 228 Query: 240 SVLLDGDADSRFRT 253 +L G +RT Sbjct: 229 VLLFSGRRRVSYRT 242 >UniRef50_C6NU33 DNA repair protein RadA (Fragment) n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU33_9GAMM Length = 189 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 109/192 (56%), Gaps = 9/192 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M++ K FVC ECG P+W G+C C AWN++ E R R++ +G + A Sbjct: 1 MSR-DKALFVCQECGGTSPKWLGRCPDCGAWNSLVEQRSE------RSQVRAGSSAYAVA 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + L+ I+++ R TG E DRVLGGG+V G+AIL+GG PG GKSTL+LQ L+ Sbjct: 54 SSPEYLNAIAVDATTRQHTGLGELDRVLGGGLVAGAAILLGGEPGIGKSTLMLQIAEGLS 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + + LYVTGEES QVA+RA RL + + + +++E E I + + I S Sbjct: 114 RSQRVLYVTGEESSAQVALRARRLRVQAETIRVVAENRWELIADFWSRKPSVVWWIHSTS 173 Query: 181 V--MHMADVQSS 190 +H D+ S+ Sbjct: 174 THSLHRPDLASA 185 >UniRef50_UPI00019062BC DNA repair protein RadA n=1 Tax=Rhizobium etli IE4771 RepID=UPI00019062BC Length = 188 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 67/148 (45%), Positives = 96/148 (64%) Query: 294 VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM 353 + G++V EGTRP+LVE+QALV + + PRR VG + RL+++LAVL H G+++ Sbjct: 1 KSPGAAVFAGMEGTRPVLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRL 60 Query: 354 ADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 DV++NV GG +++E +ADLA+ A+VSSL LP D V FGEV L+G IRPV Sbjct: 61 GQHDVYLNVAGGYRISEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGAIRPVAHTA 120 Query: 414 ERISEAAKHGFRRAIVPAANVPKKAPEG 441 +R+ EA K GF A++P+A+ G Sbjct: 121 QRLKEAEKLGFSTALLPSASAELPKGSG 148 >UniRef50_A8I6M1 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I6M1_CHLRE Length = 536 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 91/354 (25%), Positives = 141/354 (39%), Gaps = 130/354 (36%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLG 145 +VLGGGVVPG+ +L+GG+PG GKST+ LQ V Sbjct: 208 QVLGGGVVPGALVLLGGDPGVGKSTITLQV-----------------RPDAV-------- 242 Query: 146 LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 V+DSI +++ + +PG+V Q+RE L Sbjct: 243 -----------------------------VMDSINTVYLGSLPQAPGTVTQIRECGQLLL 273 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 R AK +A+ ++GH ++ L+ SR + + Sbjct: 274 RLAKDHRIALFIIGH------------------SALFLE----SRMADAEGGADGADDLA 311 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH----- 320 V +T +G+R +LVE+QALV Sbjct: 312 ASSVVGVT------------------------------MQGSRAILVEVQALVSPLGERA 341 Query: 321 --SMMANPRRVAVGLEQNRLAILLAVLHRHG-GLQMADQDVFVNVVGGVKVTETSADLAL 377 + A R A G+++ RLA L A+L +H L++A+ V VNV V + ++DLA+ Sbjct: 342 AAAASALSYRSATGVDKGRLATLCAILDKHVPTLELANCSVIVNV-----VRDVASDLAI 396 Query: 378 LLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 +A+ +S + +P+DL V GE R+ EAAK GFRR ++P Sbjct: 397 AVAVAASYYNVAVPRDLAVCGE-----------RLDVRVREAAKLGFRRVVIPR 439 >UniRef50_C0DC21 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DC21_9CLOT Length = 172 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 114/170 (67%), Gaps = 1/170 (0%) Query: 34 ITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVV 93 + E +SP A + +G A K LS+I L+E R STGFKE DRVLG G+V Sbjct: 2 VEEPIAKSSPSGAASSLGAGRRSLAPAVKPALLSEIDLQEQDRISTGFKELDRVLGDGIV 61 Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLN 152 GS +L+GG+PG GKSTLLLQ LA + + LY++GEESL+Q+ MRA+R+G +L Sbjct: 62 NGSLVLVGGDPGIGKSTLLLQVCRHLAGAEHRVLYISGEESLKQIKMRANRIGQVQGDLR 121 Query: 153 MLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAA 202 L ET++++I E E+P+++VIDSIQ M+ +V S+PGSV+QVRE+ + Sbjct: 122 FLCETNLDRIDRTIEAEKPEIVVIDSIQTMYREEVSSAPGSVSQVRESTS 171 >UniRef50_C0B7I7 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7I7_9FIRM Length = 154 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 76/145 (52%), Gaps = 13/145 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K F C CG + +W GQC C WN+ E + S + +A Sbjct: 1 MAKAKKSVFFCQNCGHEESKWLGQCPMCKEWNSFVEECVTTS--------NTAAVKAAKE 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ LS++ E R +T KE DRVLGGG+VPGS IL+GG+PG GKSTLLLQ KLA Sbjct: 53 IRIVPLSEVKTENEERVTTEIKELDRVLGGGIVPGSLILVGGDPGIGKSTLLLQVCQKLA 112 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLG 145 ++ + T Q R RL Sbjct: 113 KKKNERFCTY-----QGKNRFARLN 132 >UniRef50_C6Q2E8 Peptidase S16 lon domain protein (Fragment) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2E8_9CLOT Length = 225 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 92/188 (48%), Gaps = 14/188 (7%) Query: 281 SNPSAIFLSRGDEVTSGSSVMVVWE--------GTRPLLVEIQALVDHSMMANPRRVAVG 332 NP+ +++ GS++ V E TR +++I +V+ ++N R + Sbjct: 12 DNPAVGYVNGL--AVYGSNIGAVMEIEATAKKSNTRKGVLKITGIVEEEEISNQNRKMIR 69 Query: 333 LEQNRLAI--LLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPL 390 R ++ ++ V+ R+ GL + D+ +N GG V SA +++ A+ S++ + P+ Sbjct: 70 TSTARCSVENVITVIERNFGLNCDEYDIHINFSGGAPVDGPSAGISIATAVYSAINNIPV 129 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP--EGMQIFGVK 448 ++ + GE+ + G++R V ++ A K G + I+P N + +G+++ VK Sbjct: 130 SNEVAMTGELSIHGDVRAVGGVNAKVQAAKKAGAKVVIIPDENWQQSFSKLDGIKVITVK 189 Query: 449 KLSDALSV 456 + + + + Sbjct: 190 NIKEVIKI 197 >UniRef50_UPI0001902794 DNA repair protein RadA n=1 Tax=Rhizobium etli 8C-3 RepID=UPI0001902794 Length = 125 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 55/130 (42%), Positives = 69/130 (53%), Gaps = 7/130 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA + F+C CGA + RW G+C C WNTI E PM Sbjct: 2 MAKA-RTQFICQNCGAVHNRWAGKCDNCGEWNTIVEE----DPMGGIGSGPGKTPKKGRP 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + LS +EE PR T E DR LGGG V GSA+LIGG+PG GKSTLL+Q L+ Sbjct: 57 VALTALSG-EIEEAPRIHTAMSELDRTLGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALS 115 Query: 121 -QQMKTLYVT 129 + + +YV+ Sbjct: 116 RRGHRIIYVS 125 >UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LV6_SYMTH Length = 466 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 31/227 (13%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK-TLYVTGEESL 134 R STG + D VLGGG+ P SA L+ G PG GK+TL +Q LC+ A++ + Y T EE Sbjct: 4 RLSTGVEGLDSVLGGGLFPASATLVRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEEFP 63 Query: 135 QQVAMRAHRLGLPTDNLNM---LSETSIEQICLIAEEEQP-------------KLMVIDS 178 +Q+ A LG L L +++ + E +P + +V+DS Sbjct: 64 EQIYRDARELGFDLQALEQAGKLQVITLDPGAFLDEAIRPGGLLEELKREIGLRRVVVDS 123 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 + ++ +A + R T L G ++ V + GP E+ +D Sbjct: 124 VTLLELALAEKGG------RRTLYLLRNALHRMGATSLL---VEEGAPAEGPSAAEYMVD 174 Query: 239 CSVLLDGD--ADSRFRTLRSHKNRFGAVNELG--VFAMTEQGLREVS 281 + L D +R R L K+R G+ G VF ++ +G+R + Sbjct: 175 TVLHLTYDDFEVNRLRHLEVRKHR-GSPFRTGKHVFVISRRGIRVLP 220 >UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Tax=Methanomicrobiales RepID=RADB_METMJ Length = 224 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 23/225 (10%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGE-- 131 R STG FD +LGGG+ + I G P +GKSTL L L +Y+ E Sbjct: 4 DRVSTGSTAFDDLLGGGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYIDTEGF 63 Query: 132 --ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ---------PKLMVIDSIQ 180 E Q+A G D L + Q + + + L+V+DS Sbjct: 64 SVERFTQIA--GENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDSAT 121 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL-----AGPKVLEH 235 ++ ++ ++ ++ L AK + +++ + D G LEH Sbjct: 122 ALYRTELDLGREAIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDVERDRVAGLGGTALEH 181 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREV 280 + L+ +R LR H++R ++ F +TE G+R V Sbjct: 182 LSKAIIRLEKKDSARRAMLRKHRSRPEGLSF--DFTITEDGIRTV 224 >UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSF7_CHLT3 Length = 574 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 35/239 (14%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM--KTLYVTGE 131 LP+ TG K D VL GG+ G + ++ GN G GK+ L ++ L + QQ L+V+ E Sbjct: 18 LPKCPTGIKGLDEVLFGGIPKGRSTMVLGNAGCGKTLLAMEFLVQGIQQFGAHGLFVSFE 77 Query: 132 ESLQQVAMRAHRLGLPTD-----------NLNMLSETSIE-----------QICLIAEEE 169 E + + G + +L++ +E ++ ++ Sbjct: 78 EKKEDLLEDMQSFGWNLEAAEQSGALLIKHLDLGDSEFLESGEYDLGGLFVRLEFAIDKI 137 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAG 229 K +V+D+++ + +V +R L R+ K++GV +++ G G Sbjct: 138 GAKRVVLDTVETLFTT-----YKNVGALRTEFRRLIRWLKSKGVTVIITGETDSYGKT-R 191 Query: 230 PKVLEHCIDCSVLLDGDADSR--FRTLRSHKNR--FGAVNELGVFAMTEQGLREVSNPS 284 + DC V LD ++ R LR K R F NE F ++EQGL + S Sbjct: 192 HGIEAFVSDCVVQLDNRIQNQVPTRRLRVLKYRGSFHGTNEYP-FIISEQGLSLLPITS 249 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 28/222 (12%) Query: 77 FSTGFKEFDRVLGG-GVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESL 134 +G D +LGG G GS++L+ G G GKS+L Q + K LY+ EES+ Sbjct: 261 VPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACGRGEKCLYLNMEESV 320 Query: 135 QQVAMRAHRLGLPTDN-----LNMLSETS---------IEQICLIAEEEQPKLMVIDSIQ 180 Q+ +G+ + L + T + ++ + E +P+ ++ID + Sbjct: 321 WQIVRNMRSIGVELEPFIEKGLLLFEPTRSTMCGLEYHLVKLIKLLETYEPQHLIIDPVS 380 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVG--HVTKDGSLAGPKVLEHCID 238 + G +V+ + L + K R + +M + + +D Sbjct: 381 SFL------AVGESIEVKSMMSRLIDYLKMRHITTIMTNLSDTNAQNEITQMDISS-LMD 433 Query: 239 C--SVLLDGDADSRFRTLRSHKNRF-GAVNELGVFAMTEQGL 277 +V + + + + R + K+R G N++ F +T +G+ Sbjct: 434 TWMTVQMVRNQNEQNRLIYIIKSRGMGHSNQMREFLITSEGI 475 >UniRef50_C8W5T4 Sigma 54 interacting domain protein n=10 Tax=Firmicutes RepID=C8W5T4_DESAS Length = 575 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Query: 312 VEIQALVDHSMMANPRRVAVG--LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVT 369 V + +V+ + + R + +N + +L VL R + D D+ VN GG + Sbjct: 390 VTVTGVVEEEELGSKSRTIRRKSMARNSVENVLTVLQRVTEVDPRDYDIHVNFPGGGPID 449 Query: 370 ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIV 429 SA +A+ +A+ S++ P+ L + GEV + G ++PV ++ A G + + Sbjct: 450 GPSAGVAIAVAVYSAITCLPVDNKLAITGEVSIRGMVKPVGGVMAKVEAACLAGAEKVFI 509 Query: 430 PAANVPK--KAPEGMQIFGVKKLSDALS 455 P N+ ++ +G++I V++L + L Sbjct: 510 PKENLHDIYRSIDGIEIIAVERLEEVLE 537 >UniRef50_A6TM65 Sporulation protease LonB n=3 Tax=Clostridiaceae RepID=A6TM65_ALKMQ Length = 564 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 315 QALVDHSMMANPRRVAVG--LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETS 372 +VD P R + + +L V+ ++ + D D+ +N GG+ + S Sbjct: 387 TGIVDREETNTPGRTVKRRSTALDSVDNVLTVIRKYLNVDPRDYDIHLNFPGGIPIDGPS 446 Query: 373 ADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA 432 A + ++ A+ S++++ + L + GE+ + G+++PV +I A + G R ++P Sbjct: 447 AGITMVTAIFSAIKNLSIDSQLAMTGEISIRGKVKPVGGITAKIEAAKEAGCTRVLIPKD 506 Query: 433 NVPKKAPE-GMQIFGVKKLSDALSV 456 N ++ E +++ V + + + + Sbjct: 507 NYQERFKEFKIEVIPVDTIEEVVRL 531 >UniRef50_P42425 ATP-dependent protease La homolog n=146 Tax=Firmicutes RepID=LON2_BACSU Length = 552 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 13/154 (8%) Query: 312 VEIQALVDHSMMANP----RR--VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGG 365 + I + + + + RR +A G +N L +L R G++ +D D+ +N GG Sbjct: 384 INITGIAEEESIGSQSKSIRRKSMAKGSVENVLTVL-----RTMGMKPSDYDIHINFPGG 438 Query: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 + + SA +A+ + S++ P+ + + GE+ L G ++P+ +I A + G + Sbjct: 439 IPIDGPSAGIAMAAGIFSAIHKIPIDNTVAMTGEISLNGLVKPIGGVIPKIKAAKQSGAK 498 Query: 426 RAIVPAANVPK--KAPEGMQIFGVKKLSDALSVF 457 + I+P N K +G++I VK + L Sbjct: 499 KVIIPYENQQAILKQIDGIEIIAVKTFQEVLDEI 532 >UniRef50_B0TA55 ATP-dependent lon protease n=22 Tax=Clostridia RepID=B0TA55_HELMI Length = 658 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V R G ++AD D+ VNVVGG + SA LA+ L++ S++++ PL QD+ V GE+ L Sbjct: 529 SVFRRLAGKELADFDLHVNVVGGGNIDGPSAGLAIFLSVYSAIQEIPLWQDVAVTGEISL 588 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--GMQIFGVKKLSDALSVFDDL 460 G ++ V E+I A + G RR ++P N + G+++ V+ + +AL++ + + Sbjct: 589 RGGVKAVGGIFEKIYGARQAGIRRVLIPKENEKDVPSDLTGIEVIPVETVDEALALIEAV 648 >UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G8K6_CHLAD Length = 565 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 25/234 (10%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ--MKTLYVTGE 131 +P+ TG + FD + GGGV G LI G PG GK+ +TL A Q L+V+ E Sbjct: 6 IPKAPTGIRGFDEITGGGVPRGRPTLICGGPGCGKTLFAFETLVHGAAQHDEPGLFVSFE 65 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQI----CLIAEEEQPKL--------MVIDSI 179 ES + G +L IEQI AE + L ++ID I Sbjct: 66 ESPNDLRTNFASFGFNITDLEQRGALLIEQIPLDQSDWAEVGEYDLEGLFIRLGLLIDRI 125 Query: 180 QVMH-----MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 + + S+ + + +R L R+ + RG+ ++ + + +L+ + E Sbjct: 126 GAKRIALDTIEALFSAFRNESLLRSELQRLFRWLRQRGLTALITAE-SNNTNLSRFGIEE 184 Query: 235 HCIDCSVLLDG--DADSRFRTLRSHKNR--FGAVNELGVFAMTEQGLREVSNPS 284 DC +LLD R R K R VNE F + G+ + S Sbjct: 185 FVADCVILLDYRISEHVLTRYARIVKYRGSAHGVNEYP-FTIGPHGITILPITS 237 Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 35/247 (14%) Query: 75 PRFSTGFKEFDRVLGGG-VVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGEE 132 S+GF + D +L GG GS ILI G G+GK++L L A+ + EE Sbjct: 247 EHISSGFPDLDSLLDGGSYYRGSTILISGPTGSGKTSLGALFLNAACARGEPAILFGFEE 306 Query: 133 SLQQVAMRAHRLGLPTDN------LNMLS--------ETSIEQICLIAEEEQPKLMVIDS 178 S Q+ +G+ L ++S ET + I E+ +++VID Sbjct: 307 SADQIMRNMRSIGVDLHQWYERGLLQIVSSRPTLTGLETHLITILSTVEQSGARVVVIDP 366 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV-LEHCI 237 I H S P + L K+ G + T +V + + Sbjct: 367 ITGFHT---ISRPADIT---AMLFRLFDGLKSLGATTLATSLTTAGADPTQSEVNISSLV 420 Query: 238 DCSVLLD-----GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD 292 D ++L G+ + L+S R N++ M QGL+ V L+ GD Sbjct: 421 DTWIVLRHHEANGERNRSLLVLKSRGMR--HSNQVRELVMDRQGLKLVE-----ILTAGD 473 Query: 293 EVTSGSS 299 V G++ Sbjct: 474 TVLVGAA 480 >UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYM2_9FIRM Length = 684 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 13/207 (6%) Query: 264 VNELGVFAMTEQGLREVSNPSAI--FLSRGDEVTS--GSSVMVVWEGTRPLLVEIQALV- 318 E +++ + EV+ S + F+++ G + G ++EI+A+V Sbjct: 433 TKEGEDVKISKGDIYEVAQVSRLYQFVTKKASKKPEVGHVFGLGVAGFLGSVIEIEAVVF 492 Query: 319 -DHSMMANPRR---VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSAD 374 R A + ++ + +VL G + D DV +NV+GG + SA Sbjct: 493 PAEEKGKGQVRFNETAGSMAKDSVFNAASVLRHLTGKSIHDYDVHINVIGGGNIDGPSAG 552 Query: 375 LALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV 434 A+L A+VS++ ++PL QD+ V GE+ LAG +RPV E+ A + G R ++P N Sbjct: 553 TAILAALVSAVTEKPLRQDVAVTGEISLAGRVRPVGGVFEKAYGAKQAGIRTLVIPKEN- 611 Query: 435 PKKAPE---GMQIFGVKKLSDALSVFD 458 K PE G+ I V+ +A +V Sbjct: 612 DKDIPEGHLGLDIHAVETAEEAFAVLF 638 >UniRef50_A4VNI0 Circadian oscillation regulator n=49 Tax=Bacteria RepID=A4VNI0_PSEU5 Length = 508 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 33/234 (14%) Query: 72 EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTG 130 +E R STG + D +LGGG+ P L G+PG+GK+T+ LQ L + + + + LYVT Sbjct: 13 DEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLYVTL 72 Query: 131 EESLQQVAMRAHRLGLPTDNLNMLS----ETSIE--------------------QICLIA 166 E+ ++ + A R G D +++ ETS++ Q+ Sbjct: 73 SETKAELELVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETTQQVFDRV 132 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 E P ++ DS+ M + S + R L F TR ++++ T + Sbjct: 133 SETNPTRVIFDSLSEMRL-----LAQSPLRYRRQVLALKHFFTTRRCTVILLDDQTSEMG 187 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELG--VFAMTEQGLR 278 + H + L D + R LR K R G G F + + GL+ Sbjct: 188 DLQLHSISHGVVLLEQLAIDYGAERRRLRVIKMR-GIQFRGGYHDFVIRKGGLQ 240 Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 25/229 (10%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQ 136 S+G + DR+LGGG+ G+ L+ G G GKS+L L + + + +E++ Sbjct: 260 SSGNEMLDRMLGGGLERGTNALLVGAAGVGKSSLALTYAYAACQRGEQVAFFVFDENIGT 319 Query: 137 VAMRAHRLGLPTDNLNMLSETSIEQICLI--------------AEEEQPKLMVIDSIQVM 182 + R LG+ + ++Q+ E + L+V+DS+ Sbjct: 320 LLTRGRALGMDIEPWIERGLLHLQQVDPAELSPGEFTAAVRHSVEMQGAGLVVLDSLNG- 378 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV-GHVTKDGSLAGPKVLEHCIDCSV 241 ++ + V Q+ E L + +GV +MV G + P + + D + Sbjct: 379 YLHAMPDGKFLVLQMHE----LLSYLGQKGVVTIMVLAQHGLVGVMDTPIDISYLSDAVI 434 Query: 242 LLDGDADSRF--RTLRSHKNRFGA-VNELGVFAMTEQGLREVSNPSAIF 287 + + R L K R G N + + + G++ V P + F Sbjct: 435 MQRYFEHAGIIRRALSVVKKRSGRHENTIREYRFSPTGIQ-VGPPLSHF 482 >UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC Length = 482 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 37/235 (15%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESL 134 R STG + D +L GG++ SA L+ G PG GK+TL L L Q L++ +E Sbjct: 6 ERVSTGLEALDHILSGGLIKQSAYLVRGGPGQGKTTLGLHFLAAADGQSSPLFIGFQEPE 65 Query: 135 QQVAMRAHRLGLPTDNLNMLSETSIEQ------------------------ICLIAEEEQ 170 +Q+ + A +G+ N LS T E + E Sbjct: 66 EQLRVNAESVGIDISNFRFLSLTPEEHFFTEQQSYDVFAAADVEQEPLAKSVMETVERAI 125 Query: 171 PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGP 230 P + +DS M ++ V Q R+ R+ + RG I+ ++ + Sbjct: 126 PTHVFVDS-----MTQLRFLSADVYQYRKQVLSFLRYFRERGATILFTSELSAELP---D 177 Query: 231 KVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT--EQGLREVSNP 283 + L+ D + LD + F L+ K R G+ G M +GL P Sbjct: 178 EDLQFIADGVITLDTAPNGSF--LQVSKFR-GSNFLRGPHQMRVGNRGLEIFPRP 229 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 29/230 (12%) Query: 50 RLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKS 109 R+ + +++ +E R+STG ++ D++LGGG+ G+ LI G G GKS Sbjct: 217 RVGNRGLEIFPRPLPPKANLGEDERWRWSTGIEKLDKILGGGLEAGTISLITGPSGTGKS 276 Query: 110 TLL-LQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQIC----- 163 TL L AQ K EE + + RA L + N + +EQ+ Sbjct: 277 TLASLFVAQAAAQGRKAAIYLFEEEIDALLHRASSLSIDLKNPLREGQIKLEQVEPLRYL 336 Query: 164 ---------LIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 EEE +L+V+DSI + G + + L + RG + Sbjct: 337 TDEFATLVSQEVEEEGVELIVLDSIAGFELTL-----GGDEEAKRALHALAKSLSRRGAS 391 Query: 215 IVMVGHV---TKDGSLAGPKVLEHCIDCSVLL-----DGDADSRFRTLRS 256 +++V + T ++G K + + D + L +G L+ Sbjct: 392 VLLVNEIEALTGQFKISG-KGISYLSDNVIFLRFMEIEGALKKSLGVLKK 440 >UniRef50_Q5ZWH0 DNA integration/recombination/inversion protein n=3 Tax=Legionella pneumophila RepID=Q5ZWH0_LEGPH Length = 558 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 48/253 (18%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 + TG K D +L GG + L+ G+PG GK+ L + L +YVT +ES Sbjct: 13 KAKTGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIFTLFFTHEQLKSNNSVIYVTCDESP 72 Query: 135 QQVAMRAHRLGLPTDNLNMLSET-------------------SIEQICLIAE----EEQP 171 +Q+ AH G ++ L E +I + L E + + Sbjct: 73 EQII--AHMDGFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLRIEQAQQKIKA 130 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 ++IDS+Q + + P L ++A+ + + ++ + + ++ + Sbjct: 131 DTLIIDSLQSILLGIKNYDPN------YELLRLFQWARQKNLTVLTT--MAETQTILQTE 182 Query: 232 VL-EHCIDCSVLLDG--DADSRFRTLRSHKNRF--GAVNELGVFAMTEQGLREVS----- 281 + E+ +DC++ L D R LR KNR NE F++T G+ + Sbjct: 183 IYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYP-FSITHNGISLLPITSTK 241 Query: 282 ---NPSAIFLSRG 291 SA +LS G Sbjct: 242 LNTTTSAAYLSTG 254 Score = 81.1 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 31/223 (13%) Query: 77 FSTGFKEFDRVLGG-GVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGEESL 134 STG K D +LG G GS I+I G G K+ + Q K L+++ EES Sbjct: 251 LSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRKVLFISFEESP 310 Query: 135 QQVAMRAHRLGLPT------DNLNMLS----ETSIEQ----ICLIAEEEQPKLMVIDSIQ 180 + + + L++ S E +E I + EE+Q ++++D I Sbjct: 311 NDLIRHVKSINIDLMKYITKKKLHINSRRSVEMGLEDHIISIIELTEEKQFDVLILDPIS 370 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIV---MVGHVTKDGSLAGPKVLEHCI 237 + G+ +V+ + K+ ++ ++ +K+ ++ G L Sbjct: 371 ALLDL------GNTMEVKRLFIRFISYMKSLNKTLLFTELIPDYSKELTILG---LSSLT 421 Query: 238 DCSVLLDG-DADSRF-RTLRSHKNRFGAV-NELGVFAMTEQGL 277 + + L +++ F R + K R N++ F +T++G+ Sbjct: 422 ETWIRLSNVESNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGI 464 >UniRef50_A1WZ80 Circadian clock protein KaiC n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZ80_HALHL Length = 484 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 96/254 (37%), Gaps = 43/254 (16%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESLQQ 136 TG + D +L GG+ G L+ G PGAGK+ + L C L Q ++ T +ES Sbjct: 21 PTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLEQGEPSVLATFDESPAA 80 Query: 137 VAMRAHRLGLPT----------------DNLNMLSETSIE------QICLIAEEEQPKLM 174 + A LG P D ++S IE +I + K + Sbjct: 81 LTRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIELTALLARIGHALDALGAKRL 140 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 V+D+I M D +PGS +R + + + R ++ G + + Sbjct: 141 VVDAIDGM---DESFAPGSS--LRAELTRVFDWIRERDATTLITS-GEHSGFSERFGLED 194 Query: 235 HCIDCSVLLDGD--ADSRFRTLRSHKNRFGA--VNEL-------GVFAMTEQGLREVSNP 283 + DC +LL + R LR K R G+ NE GVF G R + P Sbjct: 195 YIADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGVFLAPITGTRLEAYP 254 Query: 284 SAIFLSRGDEVTSG 297 SA R +G Sbjct: 255 SA---ERHRTGVAG 265 Score = 88.8 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 25/226 (11%) Query: 74 LPRFSTGFKEFDRVLGGGVV-PGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGE 131 R TG D +LGGG GSA++I G G GK++ + + LY++ E Sbjct: 256 AERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAGDRVLYLSFE 315 Query: 132 ESLQQVAMRAHRLGLPTDN--------------LNMLSETSIEQICLIAEEEQPKLMVID 177 E+ ++ +G+ + + E + ++ +E+ P ++++D Sbjct: 316 EATDELLRNQRSVGVDLAPHIESGRLVLEPLLAVELGWEEHLLRVMRAVKEKLPAVVILD 375 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 M Q +E L K GV +V + + + Sbjct: 376 PASAMSDRQKD------RQGKEMLLRLFYMLKREGVTVVATELLPDYSDGFSTMDVSSIV 429 Query: 238 DCSVLLDGDAD--SRFRTLRSHKNRFGAV-NELGVFAMTEQGLREV 280 D + L D R L K R + + + ++ G+ V Sbjct: 430 DVWIKLRRDERDGKLRRLLNVVKARGLPTSDRIQEYYLSSDGVHVV 475 >UniRef50_Q742I0 Putative uncharacterized protein n=1 Tax=Mycobacterium avium subsp. paratuberculosis RepID=Q742I0_MYCPA Length = 314 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 38/256 (14%) Query: 56 GSAGVAKVQKLSDISLEE-LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 G + V + L ++S R S G+ D +L GG+ +I G PG GKSTL ++ Sbjct: 40 GMSYVVRRITLDELSAPRPTKRISVGWA--DGLLNGGMPARKFAMIYGQPGVGKSTLTVE 97 Query: 115 TLCKLAQQMKTLYVTGEESLQQVAMR--------AHRLGLPTDNLNMLSETSIEQICLIA 166 C A+ + T+Y + +R AHR+ P + +++ +I+ A Sbjct: 98 FACAAAKMVTTVYAASPDEHDPPDVRSPGDIVRLAHRIDAPLAGVYVVTVDTIDDAIAAA 157 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 E +++V+DS+ D + + ++R + + A + VG G Sbjct: 158 TEVGARMLVVDSVNACADFDARRMKAGMRKLRA-------WCRDNDAAAMGVGMYDTAGR 210 Query: 227 LAGPKVLEHCIDCSVLLDGD-------------------ADSRFRTLRSHKNRFGAVNEL 267 AG + + D + LD + D R L K RFG V + Sbjct: 211 RAGGYSVAYGADAILDLDVEQTPERDKLAELLVDEEIPTEDLSLRRLTLWKCRFGPVGQQ 270 Query: 268 GVFAMTEQGLREVSNP 283 V MT GL P Sbjct: 271 -VLRMTGGGLVPHERP 285 >UniRef50_C0D1P1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1P1_9CLOT Length = 99 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 70/99 (70%), Gaps = 1/99 (1%) Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG+K+ E + DLA+++A++SS +DRP+ +++FGEVGL+GE+R V ++R+ EA Sbjct: 1 MNIAGGMKMNEPALDLAIVMALMSSYKDRPVDPRMLIFGEVGLSGEVRAVSQAEQRVREA 60 Query: 420 AKHGFRRAIVPAANVPKKAP-EGMQIFGVKKLSDALSVF 457 AK GF I+P + K P EG+++ GV+ + +A+ + Sbjct: 61 AKLGFTACILPQVCLEKMKPVEGIKLHGVRNVREAIGLL 99 >UniRef50_Q0SPS3 ATP-dependent protease n=25 Tax=Clostridia RepID=Q0SPS3_CLOPS Length = 619 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 83/439 (18%), Positives = 162/439 (36%), Gaps = 84/439 (19%) Query: 98 ILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------G 145 I++ G PG GK+T + + A+++K+ ++ + + + L G Sbjct: 183 IILYGPPGVGKTT-AARIALETAKKLKS--TPFDDRSKFIEVNGTTLRWDPREITNPLLG 239 Query: 146 LPTDNLNMLSETSIEQI------CLIAEEEQPKLMVIDSIQVM--------------HMA 185 D + S+ + +I + E ++ ID I + Sbjct: 240 SVHDPIYQGSKRDLAEIGVPEPKPGLVTEAHGGILFIDEIGELDEILQNKLLKVLEDKRV 299 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAI--VMVGHVTKDGSLAGP------------- 230 + SS E ++ +G V++G T++ P Sbjct: 300 EFSSSYYDPDD--ENTPKYIKYLFDKGAPADFVLIGATTREPGEINPALRSRCTEVYFEP 357 Query: 231 ---KVLEHCI-----DCSVLLDGDADSRFRTLRSHKNR-------------FGAVNELG- 268 + +E + +V L+ + + + R +G E+ Sbjct: 358 LSSRDIEKIVLNAAKKLNVKLEEGLEKKIASYTIEGRRAVNILADAYGHAIYGLEGEVPE 417 Query: 269 VFAMTEQGLREVSNPSAI----FLSRGDEVTSGSSVMVVWEG--TRPLLVEIQALVDHSM 322 +T + L EV + L +E G + G + +E A Sbjct: 418 DLEITSKDLNEVVSIGRFTPYEILENLEEKEVGHVYGLGVSGFLGSTIEIEATAFKAKKK 477 Query: 323 MANPRR---VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLL 379 A R A + ++ + +V+ R + D D+ VNV+GG K+ SA A+ + Sbjct: 478 GAGKIRFNDTAGSMAKDSVFNAASVIKRLTDKDINDYDIHVNVIGGGKIDGPSAGAAITI 537 Query: 380 AMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP 439 ++S+L ++P+ QDL + GE+ L G+I+PV E+I A + G + VP N + P Sbjct: 538 CIMSALLEKPIRQDLAITGEISLRGKIKPVGGIFEKIYGARRKGIKLVTVPKDN-ENEIP 596 Query: 440 EGMQIFGVKKLSDALSVFD 458 +G++ VK +S + + Sbjct: 597 KGLEDIEVKAISSIEELME 615 >UniRef50_Q1QT32 Putative circadian clock protein, KaiC n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT32_CHRSD Length = 483 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 37/265 (13%) Query: 40 AASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 + + G G ++ G E DR+ GGG+ G+ + Sbjct: 204 GSGFSEGEHTLRLGDHGMQVFERLMPGEHRRTYVAEELPCGIGELDRLSGGGITRGTVTI 263 Query: 100 IGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETS 158 I G G GK++L LQ + + A + +++ T EES+ + R +G+P ++ S Sbjct: 264 ISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEESIGTLRTRCEAIGIPVSDMMAKGSLS 323 Query: 159 IEQICLI--------------AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 I+++ + E++ +++++DS+ QS G + A L Sbjct: 324 IDEVEPLHYSPDEFAWRVRTEVEQQGARMVMLDSLAGFR----QSVRGD--DITAHAHAL 377 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKV------LEHCIDCSVL-----LDGDADSRFRT 253 + GV +++V + ++AG ++ + + D VL LDG Sbjct: 378 CHYLSNMGVTVLLVN---EQSAIAGEELRPSEDDINYLADTIVLLRYMELDGGLRKAIGI 434 Query: 254 LRSHKNRFGAVNELGVFAMTEQGLR 278 L+ F L F +T +GLR Sbjct: 435 LKKRTGDFEKT--LREFQITREGLR 457 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 35/215 (16%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESL 134 R S +R+L GG +PG + L+ G PG GK+TL LQ L A L ++ ES Sbjct: 7 ERISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADG-NGLLISLGESE 65 Query: 135 QQVAMRAHRLGLPTDNLNMLSE------------TSIEQ-----------ICLIAEEEQP 171 + + A R+GL D +++ T +E I + + P Sbjct: 66 RNLRADALRIGLSLDGTSVIDLSPGADAEPEAAYTLLEPWEAEGVDIRSRIGALLPDGPP 125 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 + + ID++ + ++ Q R+ L + + G ++ T + + Sbjct: 126 ERVFIDAL-----SQLRQLMPDAYQFRKQVMGLLEYLNSAGTTVL----YTAEQGSSADT 176 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNE 266 L + D + L+ + R LR K R +E Sbjct: 177 DLRYLGDGILELEHRENR--RILRVLKFRGSGFSE 209 >UniRef50_C7NVJ6 Putative circadian clock protein, KaiC n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NVJ6_HALUD Length = 489 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 31/222 (13%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGE 131 +L R STG D VL GG+V G +L+ G PGAGK+ L L +A ++LYV Sbjct: 2 QLSRLSTGVAGLDAVLDGGLVRGRNVLVRGTPGAGKTIFGLYFLSAGIAADERSLYVNLG 61 Query: 132 ESLQQVAMRAHRLGLPTDNLNM---------LSETSIEQICLIAEEEQPKLM-----VID 177 E V A L T+ ++ +E + AE +QP + V+D Sbjct: 62 EPQAYVEETADAFDLQTEGIHFHNLSPTSEQFAEQESYDVFESAEVDQPDFIDSLRTVVD 121 Query: 178 SIQVMH-----MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 ++ + + + Q R+ L + K G +++ G + Sbjct: 122 EVEPDRVLLDPITEFRYLTSDERQFRKGILGLLDYLKDVGATVMLTSQA---GETVTDED 178 Query: 233 LEHCIDCSVLLDGDADSR------FR--TLRSHKNRFGAVNE 266 L+ +D V L+ DSR FR + R K+ +G +E Sbjct: 179 LQFLVDGVVSLEVVQDSRAVQVSKFRGSSFRRGKHFYGIDDE 220 Score = 89.2 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 19/227 (8%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGE 131 E S+G E D +LGGG+ G+ ++ G GAGK+T +Q L + A + + + E Sbjct: 238 EDETLSSGVPELDSLLGGGIDRGTVTILSGPTGAGKTTTGVQFLTEAALDKTEGVLFQFE 297 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-----EEQPKLMVIDSIQVMHMAD 186 E+ + + RA +G+P + SI +I E+ + V D ++++ + Sbjct: 298 EAERTIRKRADAIGIPLRTVIEEGCLSIVEIEPDEYTVGEFEQLIREAVDDGVELVMIDG 357 Query: 187 VQSSPGSVAQVRETAAYLT---RFAKTRGVAIVMVGHV--TKDGSLAGPKVLEHCIDCSV 241 Q ++ + + A L R+ ++ GV+ ++V V A + + D V Sbjct: 358 TQGFKQNLRGLEDPTAALLRVGRYLRSAGVSTILVNEVHNITGDFRATEERTSNLADNLV 417 Query: 242 LL-----DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNP 283 L G+ L+ + F + L +T G+ V +P Sbjct: 418 FLRHVEYRGELRKVIGALKMRTSDFE--HSLRELEITTDGI-CVGDP 461 >UniRef50_C9KM28 ATP-dependent protease, Lon family n=3 Tax=Clostridiales RepID=C9KM28_9FIRM Length = 651 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V+ + G + D DV +NV+GG + SA A+L +VS++ R + QD+ V GE+ L Sbjct: 531 SVMRQLTGKDIHDYDVHINVIGGGNIDGPSAGTAILACIVSAVTGRRIRQDVAVTGEISL 590 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--GMQIFGVKKLSDALSVFDD 459 AG +RPV E+ A + G + ++P N + G+ I V+ +A + + Sbjct: 591 AGRVRPVGGVFEKAYGARQAGIKTLVIPKENERDIPEDLLGLDIHAVETAEEAFQLIFE 649 >UniRef50_A9W785 Non-specific serine/threonine protein kinase n=12 Tax=Bacteria RepID=A9W785_METEP Length = 520 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 29/234 (12%) Query: 51 LSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKST 110 S A S + + + R STG D VL GG+ P L+ G PG GK+T Sbjct: 4 NSTGAASEPMNEAMSTTSTRSGSETRISTGISGLDEVLCGGLTPDRLYLLEGTPGTGKTT 63 Query: 111 LLLQTLCK-LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETS----------- 158 L LQ L + A++ ++LYVT E+ ++ A G D + + + Sbjct: 64 LALQFLLEGAARKGRSLYVTLSETADELRAAALSHGWSLDGIELYELVNEMGLDPDSEQS 123 Query: 159 ------------IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTR 206 + ++ E +P+ +V DS+ + + + + R L + Sbjct: 124 ILHPSEIELGETVREVMARVESLKPERVVFDSLSELRL-----LAQNPLRYRRQILALKQ 178 Query: 207 FAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNR 260 F R ++M+ T + + H + + S R LR K R Sbjct: 179 FFAKRACTVLMLDDRTSEAGDLQLHSIAHGVISLDQNPREFGSERRRLRIVKMR 232 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 87/220 (39%), Gaps = 24/220 (10%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESLQQ 136 STG E D +LGGG+VPG+ L+ G G GK+T L+ L L + Y +E L Sbjct: 271 STGSDELDLLLGGGLVPGTNTLLLGPSGVGKTTTGLRCMLAALERGETATYYLFDEGLAT 330 Query: 137 VAMRAHRLGLPTDNLNMLSETSIEQIC--------------LIAEEEQPKLMVIDSIQVM 182 + RA LG+ +I QI EE + +DS+ Sbjct: 331 MIARATLLGMDLRPHLGTGRLTIMQIDPAELSPGEFAAIVRQAVEERGSTFVAVDSLNA- 389 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV-GHVTKDGSLAGPKVLEHCIDCSV 241 ++ + + Q+ E L + +GV ++V G G + L + DC + Sbjct: 390 YLHAMPGEEHLILQMHE----LLSYLNQKGVTTLLVLGQHGVIGEVRTDIDLSYLSDCIL 445 Query: 242 LL-DGDADSRFRT-LRSHKNRFGA-VNELGVFAMTEQGLR 278 L +A RT L K+R + ++ GLR Sbjct: 446 LFRFFEASGEIRTALSVVKSRVNPHERTIRELRLSTDGLR 485 >UniRef50_D2RXS1 Sigma 54 interacting domain protein n=7 Tax=Euryarchaeota RepID=D2RXS1_9EURY Length = 731 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 83/179 (46%), Gaps = 15/179 (8%) Query: 289 SRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG----LEQNRLAILLAV 344 + +G +VM G +++ + A + + + +A G + + + + A+ Sbjct: 518 GGVEGRVNGLAVMGEDSG---IMLPVMAEIAPAQGG-GQVIATGKLKEMAEESVQNVSAI 573 Query: 345 LHRHGGLQMADQDVFVNV--VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 + + + ++++D+ + G V SA + + A++S+L D P+ Q + + G + + Sbjct: 574 IKKFSDVDLSEKDIHIQFVQAGQQGVDGDSASITVATAVISALEDIPVDQTVAMTGSLSV 633 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAAN-----VPKKAPEGMQIFGVKKLSDALSV 456 G++ PV +I AAK G + I+P AN + + E ++I +S+ L V Sbjct: 634 RGDVLPVGGVTHKIEAAAKAGCTKVIIPKANEQDVMIEDEYEEMIEIIPCSNISEVLDV 692 >UniRef50_O28184 DNA repair and recombination protein radB n=3 Tax=Archaeoglobaceae RepID=RADB_ARCFU Length = 221 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGE----E 132 TG K D +LGGGV G+ I G+ G GK+TL L A+Q K Y+ E E Sbjct: 6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFKVAYIDTEGLSGE 65 Query: 133 SLQQVAMRAHRLGLPTDNLNML----SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQ 188 ++Q+ RL + +I++ + E+ KL+++D ++ ++++ Sbjct: 66 RVRQI-FGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLYRSELE 124 Query: 189 SSPGSVAQVRETAAYLTRF---AKTRGVAIVMVGHVTK------DGSLAGPKVLEHCIDC 239 + RE + LT A+ VA+V+ + D L GP LEH Sbjct: 125 DDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFTDVGSGVDRPLGGPS-LEHLSKV 183 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLRE 279 + L+ + R TL K+R+ + + +T++G+ Sbjct: 184 IIALERSNELRKATL--IKHRWMKEGKSCFYRITDRGIEP 221 >UniRef50_Q9UYC6 Pab lon intein n=1 Tax=Pyrococcus abyssi RepID=LONH_PYRAB Length = 998 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 85/173 (49%), Gaps = 14/173 (8%) Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMM-ANPRRVAVG----LEQNRLAILLAVLHRHG 349 +G +++ G +++ I+A+V + + + G + + + + A++ R+ Sbjct: 779 VNGLAIIGEQSG---IVLPIEAIVAPAASKEEGKIIVTGKLGEIAREAVLNVSAIIKRYK 835 Query: 350 GLQMADQDVFVNVVGGVK-VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 G ++ D+ V + + V SA +++ A++S+L + P+ QD+ + G + + GE+ P Sbjct: 836 GEDISRYDIHVQFLQTYEGVEGDSASISVATAVISALEEIPVRQDVAMTGSLSVRGEVLP 895 Query: 409 VPSGQERISEAAKHGFRRAIVPAANVPK-----KAPEGMQIFGVKKLSDALSV 456 V +I A + G ++ I+P AN E ++I V+++ + L V Sbjct: 896 VGGVTPKIEAAIEAGIKKVIIPKANEKDVFLSPDKREKIEIIPVERIDEVLEV 948 >UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepID=C5A470_THEGJ Length = 449 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 25/230 (10%) Query: 65 KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM- 123 + ++ +++ R TG +FD +LGGG GS LI G G+GK+ L +A+Q Sbjct: 227 RFAERNIQTKERIKTGIPKFDELLGGGFYKGSINLIAGPTGSGKTIFALTIASNMAKQGF 286 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDN--LNMLSE--TSIE---QICLIAEEEQPKLMVI 176 + LY+T EE+L + LGL D ++++ E T I+ I + E +++ I Sbjct: 287 RVLYMTFEEALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEILFI 346 Query: 177 DSIQVM--HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 DSI M HM + + +R YL +K + + ++M +++++ +L Sbjct: 347 DSISAMQSHMEEEDF----IKAIR----YLQLLSKEKNITLIMT-YLSQNSNLLQSTGFS 397 Query: 235 HCIDCSVLLDGDADSR-----FRTLRSHKNRFGAVNEL-GVFAMTEQGLR 278 +D +L + SR R L K R + F +T G+ Sbjct: 398 TLMDTITILSYELPSRPGEFLKRYLMVLKARHSEHKAVLRKFKITLGGIE 447 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 30/239 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC-KLAQQMKTLYVTGEE 132 + TG D+ L GG G++ILI GNPG GK+ L + L + + +K Y++ E Sbjct: 1 MELIPTGIPGLDKALSGGFSRGTSILIAGNPGTGKTHLAVHVLFNNMKKGLKGAYISFAE 60 Query: 133 SLQQVAMRAHRLGLPTD---------NLNMLS------ETSIEQICLIAEEEQPKLMVID 177 + +Q A GL + +ML+ + ++ + E +P ++V D Sbjct: 61 TKRQFYQNAMESGLNFEEAEKKGVFKFYDMLTMPKEEMKDFLDFLIQDLVEWKPDIIVFD 120 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SI V+ + + + + L +++ + G V E + Sbjct: 121 SITVL--GQIFGAAMMRSFLHSIIGRLVNAL---NSLAILIDEIPYGERRVGFGVEEFVV 175 Query: 238 DCSVLLDGDADSRF--RTLRSHKNR----FGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 D ++L+ + R L K R + E + +T+ G+ + P F R Sbjct: 176 DGVIVLEMERQREVIKRYLTIPKMRGRYIARSTYE---YVITDYGIDVIPIPDLRFAER 231 >UniRef50_O58221 Pho lon intein n=9 Tax=Archaea RepID=LONH_PYRHO Length = 1127 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 84/173 (48%), Gaps = 14/173 (8%) Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMM-ANPRRVAVG----LEQNRLAILLAVLHRHG 349 +G +++ G +++ I+A+V + + + G + + + + A++ R+ Sbjct: 910 VNGLAIIGEQSG---IVLPIEAIVAPAASKEEGKIIVTGKLGEIAKEAVLNVSAIIKRYK 966 Query: 350 GLQMADQDVFVNVVGGVK-VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 G ++ D+ V + + V SA +++ A++S+L + P+ QD+ + G + + GE+ P Sbjct: 967 GEDISKYDIHVQFLQTYEGVEGDSASISVATAVISALEEIPVRQDVAMTGSLSVRGEVLP 1026 Query: 409 VPSGQERISEAAKHGFRRAIVPAANVPK-----KAPEGMQIFGVKKLSDALSV 456 V +I A + G + I+P +N + ++I V+++ + L V Sbjct: 1027 VGGVTPKIEAAIEAGIKTVIIPKSNEKDVFLSPDKRKKIKIIPVERIDEVLEV 1079 >UniRef50_Q58812 Putative protease La homolog n=5 Tax=Methanocaldococcus RepID=LONH_METJA Length = 649 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%) Query: 344 VLHRHG-----GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 V + + + ++++++ K+ SA A+ LA++S+L D PL QD + Sbjct: 516 VAEKKLPLPKKDIDLNNKEIYIQFSQSYSKIDGDSATAAVCLAIISALLDIPLKQDFAIT 575 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP-EGMQIFGVKKLSDALSV 456 G + L+G + + E+I A ++GF+R I+P AN+ EG++I VK L + + + Sbjct: 576 GSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANMIDVIETEGIEIIPVKTLDEIVPL 635 Query: 457 FDDL 460 DL Sbjct: 636 VFDL 639 >UniRef50_D2EGM1 Putative circadian clock protein, KaiC n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGM1_9EURY Length = 237 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 21/204 (10%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGE 131 E+ R +TG D L GG S + + G PGAGK+T Q L + A + K LY T E Sbjct: 9 EIERETTGIPGLDEALNGGFPKSSVVFLTGTPGAGKTTFSFQFLLEGAKKGEKGLYFTLE 68 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSI------------EQICLIAEEEQPKLMVIDSI 179 ES + + + + I E I + K +V+DSI Sbjct: 69 ESQDDLMQQFMMVDSKIKDYIEKGLIKIVTIPLVDYDSMKEFISSELDAMAAKRLVVDSI 128 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV-TKDGSLAGPKVLEHCID 238 + M + +R+ L+ K R + +G + + L+ V E D Sbjct: 129 TYLQMF-----FSDIMSIRKAVIELSNIIKARDCTAIFIGEMPYGENKLSSFGVEEFASD 183 Query: 239 CSVLLD-GDADSRF-RTLRSHKNR 260 V L + S F R LR K R Sbjct: 184 GVVALYMVERQSSFIRALRIIKMR 207 >UniRef50_Q0AB05 Putative circadian clock protein, KaiC n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AB05_ALHEH Length = 492 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 37/227 (16%) Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL 126 + ++ R S+G D++L GG++ L+ G PG GK+TL L L + +TL Sbjct: 9 ASVAAGLPERVSSGVAGLDQILDGGLIARRGYLLRGGPGLGKTTLGLSFLTAAGEGERTL 68 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETS------------------------IEQI 162 ++ +E ++ A +GL T + LS I+ + Sbjct: 69 FIGFQELEAELRANAATVGLDTRGIEFLSLAPTEEFFAGSETYDVFAASDVEQAPMIDTV 128 Query: 163 CLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT 222 E QP + IDS+ + + Q R+ L RF RG +V T Sbjct: 129 VEAVERIQPHRVFIDSLTHLRLVSADR-----YQFRQQVVSLLRFLVERGATVVF----T 179 Query: 223 KDGSLAGP-KVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELG 268 + S+ P L+ D + L+ S RT+ K R G+ + G Sbjct: 180 SESSMENPDDDLQFLADGVINLEAGPSS--RTIEVSKLR-GSAAQRG 223 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 96/262 (36%), Gaps = 32/262 (12%) Query: 47 RNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGA 106 R ++ + V ++L+D + R +G FD +L GG+ G+ LI G G Sbjct: 228 RVDKSGIHVFPRTVPPTRRLTDGAGTVQFR--SGNAAFDEMLHGGLENGTITLITGPSGI 285 Query: 107 GKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTD--------------NL 151 GKST+ A + EE L R L + D L Sbjct: 286 GKSTVAAMIAAAAAHDGHRASVFQFEEELDGYLRRLRALDVDVDGPLQSRGLVVEQIEPL 345 Query: 152 NMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTR 211 L++ + + E+E+ ++VIDS+ MA Q V+ L + R Sbjct: 346 RYLADEFMGDLLQRVEDEEIDVVVIDSVTGFDMALNQDEA-----VQRPLHTLAKSLSRR 400 Query: 212 GVAIVMV--GHVTKDGSLAGPKVLEHCIDCSVLLD----GDA-DSRFRTLRSHKNRFGAV 264 GV +++V H + + + H D + GD + L+ + F Sbjct: 401 GVTVLLVNENHSFGEELQISSREISHLADNVIFFRYVHGGDRLEKLVGILKKRMSDFD-- 458 Query: 265 NELGVFAMTEQGLREVSNPSAI 286 + F + G R V P+++ Sbjct: 459 RQQRRFEIAPGGFR-VGEPASV 479 >UniRef50_C4V1V9 ATP-dependent protease n=2 Tax=Selenomonas RepID=C4V1V9_9FIRM Length = 713 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +V+ R G + D D+ VNV+GG + SA A+L A+VS++ + Q++ V GE+ L Sbjct: 587 SVMRRLTGRDLHDYDLHVNVIGGGNIDGPSAGTAILTAIVSAVTGAAVQQNVAVTGEISL 646 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--GMQIFGVKKLSDALSVFD 458 GEIRPV E+ A + G I+P N + G+ I +K +A +V Sbjct: 647 QGEIRPVGGVFEKAYGARQAGISTLIIPWENKKDIPEDHLGLTIHRLKTAEEAFAVLF 704 >UniRef50_A9WC99 Non-specific serine/threonine protein kinase n=9 Tax=cellular organisms RepID=A9WC99_CHLAA Length = 482 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 40/232 (17%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEES 133 R +TG D + GGG+VP A L+ G PG GK+TL L L A TL+++ EE+ Sbjct: 7 QRLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLFISLEET 66 Query: 134 LQQVAMRAHRLGLPTDNLNMLS------------------------ETSIEQICLIAEEE 169 ++ A + G+ + +++L E QI + Sbjct: 67 ESKIRWNAAQTGINLNQVHILDLSPSSDFFANTQIYDIFSPAEVEREPITRQIVETVQRL 126 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAG 229 QP + +DSI + Q R+ RF + +V + + S A Sbjct: 127 QPTRVFLDSI-----TQFRYLTPDTFQFRKQVISFLRFLAEQRTTVVF----SAENSAAF 177 Query: 230 P-KVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAM--TEQGLR 278 P L++ D + L+ + R L K R G+ G AM T QGL+ Sbjct: 178 PDDDLQYIADGIISLE--LTNTGRYLTVSKMR-GSSFVSGRHAMRLTTQGLQ 226 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 110/273 (40%), Gaps = 44/273 (16%) Query: 35 TEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP 94 +S + R+ G ++ ++ +G E D +L GGV Sbjct: 203 VSKMRGSSFVSGRHAMRLTTQGLQVFPRIIPTPLVAGHAFTLIPSGVPELDELLNGGVER 262 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 G+ LI G G GK+TL Q + + A + +++ + EE ++ + R + +P + Sbjct: 263 GTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFEEEIEIMQQRCEAVNIPVRAMQK 322 Query: 154 LSETSIEQICLI--------------AEEEQPKLMVIDSIQ----VMHMADVQSSPGSVA 195 IE+I + E+EQ K+++IDS+ MH D+ ++ Sbjct: 323 QQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMIDSVTGYRLCMHGEDL------IS 376 Query: 196 QVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAG-PKVLE----HCIDCSVLL-----DG 245 Q+ L+++ ++RGV + ++ T + G KV E + D + L +G Sbjct: 377 QL----HALSKYLQSRGVTVFLIMDTT---DIVGDFKVTEIGASYLGDNIIFLRFLEIEG 429 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 + L+ F L FA++ G++ Sbjct: 430 ELRKAIGVLKKRLGDFEKT--LREFAISRYGIK 460 >UniRef50_P73860 KaiC-like protein 1 n=35 Tax=cellular organisms RepID=KACL1_SYNY3 Length = 568 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 34/233 (14%) Query: 74 LPRFSTGFKEFDRVLGG-GVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGE 131 R STG + D + GG G GS+IL+ G G GK+TL + + LY+ E Sbjct: 250 QERISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAFFAQATCLRGERCLYLATE 309 Query: 132 ESLQQVAMRAHRLGLPTDNL--------------NMLSETSIEQICLIAEEEQPKLMVID 177 ES QQ+ + +GL N E + +I +P L+V+D Sbjct: 310 ESPQQICRNLNSIGLDLSPYLDSQLLQFDATRPTNYNLEMRLFKIHSWVRNFKPSLVVVD 369 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVM-------VGHVTKDGSLAGP 230 + + + G++ Q + L + K++ + + + VG+ + + Sbjct: 370 PMSNLITS------GNLNQTKNFFMRLIDYLKSQKITVFLTDLTGGNVGYDNEQTEVGVS 423 Query: 231 KVLEHCIDC-SVLLDGDADSRFRTLRSHKNRFGA-VNELGVFAMTEQGLREVS 281 +++ ++ ++ ++G+ + R L K+R A N++ F ++ G+ + Sbjct: 424 SLMDTWLELQTLRINGERN---RILYILKSRGMAHSNQVREFILSNDGVDLIE 473 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 35/237 (14%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTLYVTGEES 133 + TG + FD + GG+ G LI G+ G GK+ ++ L + A + V+ EES Sbjct: 12 KCPTGIQGFDEITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVEYGEPGVLVSFEES 71 Query: 134 LQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ----------------------P 171 +++ LG +L + I+ I + A E Q Sbjct: 72 AKEIIQNVASLGWNLQDLVAEEKILIDHIYVEASEIQETGEYDLEALFIRLGYAINKIGA 131 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 K +++D+I+V+ S + VR L + K +GV V+ G D +L Sbjct: 132 KRILLDTIEVLF-----SGLENTNIVRAELRRLFHWLKQKGVTAVITGE-RGDKNLTRQG 185 Query: 232 VLEHCIDCSVLLDGD--ADSRFRTLRSHKNRF--GAVNELGVFAMTEQGLREVSNPS 284 + E+ DC + LD + RT++ K R + NE F + E G+ + S Sbjct: 186 LEEYVSDCVIKLDQKTVEEVATRTIQVVKYRGSRHSNNEYP-FLIEENGISVLPITS 241 >UniRef50_O26878 Putative protease La homolog type 1 n=30 Tax=Archaea RepID=LONH1_METTH Length = 644 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 73/139 (52%), Gaps = 10/139 (7%) Query: 327 RRVAVG----LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK-VTETSADLALLLAM 381 R +A G + + + + A++ ++ G +++ D+ + + V SA +++ A+ Sbjct: 474 RIIATGKLGEIAREAVQNVSALIKKYTGTDISNYDIHIQFLQAYDGVEGDSASVSVATAV 533 Query: 382 VSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-----VPK 436 +S+L + P+ Q + + G + + G++ PV +I AA+ G R+ ++PA+N + K Sbjct: 534 ISALEEIPVDQSVALTGSLSIRGDVLPVGGVTGKIEAAAEAGIRKVLIPASNMGDVMIEK 593 Query: 437 KAPEGMQIFGVKKLSDALS 455 K + ++I V+ L D L Sbjct: 594 KYEDMVEIVPVETLGDVLE 612 >UniRef50_D2RH30 Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RH30_ARCPR Length = 471 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 36/215 (16%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGEESL 134 R S+G + D +L GG +P + LI G PG+GK+T L L + + L++T E Sbjct: 4 RISSGIESLDIILNGGFLPKRSYLIRGGPGSGKTTFCLHFLIEGVKNNENVLFITFGEPS 63 Query: 135 QQVAMRAHRLGLPTDNLNMLSETSIEQ------------------------ICLIAEEEQ 170 +++ A +GL + + L E+ I E+ + Sbjct: 64 EKIKENAKAIGLSPEGIVFLDLAPSEEFFVKDQTYDIFSPADVERGPTVKTIVETVEKVK 123 Query: 171 PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGP 230 P +VIDS+ + V Q R+ L F RG ++ T + + Sbjct: 124 PSRVVIDSVTYLR-----FLAPDVYQYRKQVLSLIDFLTDRGATVLF----TSESGVIPD 174 Query: 231 KVLEHCIDCSVLLDGDADSR--FRTLRSHKNRFGA 263 L+ D + L + +R L K R + Sbjct: 175 DDLQFIADGVIDLIMEMIGVDIYRRLSVKKFRGSS 209 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 28/265 (10%) Query: 35 TEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP 94 + +S + + G+ G ++ + STG KE D + GG+ Sbjct: 202 VKKFRGSSFLPGYHLIRIGHGGIRIYPRILPQKIERKHIGEKISTGIKELDEMTNGGINR 261 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLP------ 147 + +I G G GK+TL ++ + A + Y EE + RA ++G+ Sbjct: 262 QTITVISGAAGTGKTTLAMRIAYEAALRGENVTYYAFEEDPAIILSRAKKVGMERIRELV 321 Query: 148 ---------TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVR 198 ++L E ++ E KL++IDS+ +A V + R Sbjct: 322 EKSLIKIVFAESLKFAPEEALHITLKDLRERNTKLVIIDSLNGAELALVGAE-----DKR 376 Query: 199 ETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL--DGDADSRFRTLRS 256 + R G ++++ + + + D ++L + +R Sbjct: 377 RPIQAILRNLVANGATVILIDEFEANSRGFTRLGVSYLADNIIVLGHYVKDGVTRKYIRV 436 Query: 257 HKNR---FGAVNELGVFAMTEQGLR 278 K R F E+ F +T +G++ Sbjct: 437 VKMRLSKFSP--EIRDFEITSEGIK 459 >UniRef50_C5A1G9 RecA family AAA ATPase n=3 Tax=Thermococcus RepID=C5A1G9_THEGJ Length = 237 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 31/230 (13%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEE 132 + R STG D +LGGG++ G A L+ G PGAGK+ L + + LYVT EE Sbjct: 5 VKRVSTGIAGLDEMLGGGLIAGRAYLVEGPPGAGKTILATHFAMAGVDRGENALYVTLEE 64 Query: 133 SLQQVAMRAHRLGLP--TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSS 190 Q+ RLG + N ++ T + + E P + +S + + + Sbjct: 65 PADQLKEDMARLGFNVGSGNFKIVDATPVNPERSVVFSESPDIEFGESFERLLNSLSAEL 124 Query: 191 PGSVAQ-------------------VRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 Q R+ + + V ++M V K Sbjct: 125 RKRDYQRVVIDPITMVKLTVPNELEYRKIFLAFLKTLRRYNVTVLMTAEVEKS------D 178 Query: 232 VLEHCIDCSVLLDG--DADSRFRTLRSHKNRFGAVNEL-GVFAMTEQGLR 278 V ++ + + L D R ++ K R A +E+ + +T QG++ Sbjct: 179 VEKYLVSGVIRLLRVESGDKIVRAIQITKFRGSAFDEVMRPYKITNQGIQ 228 >UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12XV7_METBU Length = 301 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 26/222 (11%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEE 132 + R STG D +L GGV GS++++ G PG GK+TL +Q L + + K L+ + EE Sbjct: 59 IKRVSTGVAGLDDMLEGGVPKGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFEE 118 Query: 133 SLQQVAMRAHRLGLPTD--------NLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 + Q+ R G + +S + E+I I E +P+ +V DS+ V Sbjct: 119 RIPQLIQHFMRFGWDLGSHIDDGYLEIFGMSMLTFEEIGEIIETYKPQRIVFDSLNVFTD 178 Query: 185 ADVQSSPGSVAQVRETAA--YLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + + R++ + L + K + +V + D + Sbjct: 179 PE---------EFRKSISWRSLHKLLKKLNITTFLVTEKENGMEKKVYDKYDFVGDGIIF 229 Query: 243 LDGDADSRFR-----TLRSHKNRFGAVNELGV-FAMTEQGLR 278 LD + L K R V+ F T++G+ Sbjct: 230 LDKMQINEVEPTLTPVLAVQKMRATKVDTTPQPFRFTDKGIS 271 >UniRef50_A6UPI7 Peptidase S16, Lon-like protease n=1 Tax=Methanococcus vannielii SB RepID=A6UPI7_METVS Length = 685 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 342 LAVLHRHGGLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 L + L +A+ ++++ K+ SA A L+++SSL + PL QD + G + Sbjct: 564 LNITKTKEDLDLAEHEIYIQFSQSYSKIDGDSATAAACLSIISSLLNIPLKQDFCITGSL 623 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVFDD 459 L G+I + E+I+ A ++GF+R I+P +N+ E +++ V+KL + + + + Sbjct: 624 DLNGDILAIGGVNEKINAAKEYGFKRVIIPKSNLEDVIDTESIRVIAVEKLEEIIPLVFE 683 Query: 460 L 460 L Sbjct: 684 L 684 >UniRef50_B5ISK3 KaiC domain protein n=5 Tax=Thermococcaceae RepID=B5ISK3_9EURY Length = 452 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 25/232 (10%) Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQ 121 + + + STG KE D +L GGV GS LI G G GK+T L Q Sbjct: 223 PELIRGQGDASEEKISTGIKELDAILDGGVYRGSITLIVGMTGTGKTTFGLHFAIANALQ 282 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNML----------SETSIE---QICLIAEE 168 K +Y++ EES+ Q+ A R G+P D + ++T + +I I +E Sbjct: 283 GRKAIYISFEESVGQLKRAARRYGMPVDEVLDKTLKMFSWVPEAKTPVHTFLKIREIIDE 342 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 +P+++VIDS+ + + ++ + YL+ K GVA + + D Sbjct: 343 HKPEVLVIDSLTSLREH------MNETELEKMLRYLSLIIKQYGVATYITLNAETDFETV 396 Query: 229 GPKVLEHCIDCSVLLDGDADSRF--RTLRSHKNRFGAVNELGV--FAMTEQG 276 D + L + R L K R G+ + + + +T++G Sbjct: 397 PFTKASTLSDNIIGLKYVIKNELIERRLAVIKAR-GSNHSRKIHKYDITDKG 447 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 26/228 (11%) Query: 77 FSTGFKEFDR-VLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTLYVTGEES 133 TG + FD ++ G GS I++ G PG GK+ + + K +Y++ E+ Sbjct: 1 MKTGIEFFDETIIREGFPEGSLIIVAGEPGTGKTIFTSTIIHNGLEKFGEKGMYISLSET 60 Query: 134 LQQVAMRAHRLGLPTDNLN---------------MLSETSIEQICLIAEEEQPKLMVIDS 178 + RLG+ + + E IE I +PK +VIDS Sbjct: 61 KEDFYDEMKRLGMDFEKYEKSGLFRFMDLVTVTPDVIEKEIELIMKEILSFRPKRIVIDS 120 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 I + G+ L RF K+ G ++ G V E +D Sbjct: 121 ITA-----LTQLLGTEKTRIFLHTTLGRFIKSFGAVAFLIAEKPLGKETIGHGVEEFVVD 175 Query: 239 CSVLLDGDA--DSRFRTLRSHKNRFGAVNELG-VFAMTEQGLREVSNP 283 ++L + + R R + K R ++ + + +T++G+ ++ P Sbjct: 176 GVIVLKYISLGEVRRRVMEIPKMRKRSIEKSQYEYVITDRGIEFLAIP 223 >UniRef50_A5UNJ6 ATP-dependent protease La, LonB n=2 Tax=Methanobrevibacter smithii RepID=A5UNJ6_METS3 Length = 659 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 66/131 (50%), Gaps = 6/131 (4%) Query: 333 LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK-VTETSADLALLLAMVSSLRDRPLP 391 + + + A++ ++ ++D D+ V + V SA +++ A++S++ D P+ Sbjct: 493 IANESVQNVSALIKKYTNKDISDYDIHVQFIQTYDGVEGDSASVSIATAVISAVEDIPID 552 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP-----KKAPEGMQIFG 446 Q + + G + + G++ P+ +I AA+ G ++ ++P +N+ KK + ++I Sbjct: 553 QTVALTGSLNVRGDVMPIGGATAKIEAAAESGIKKVLIPKSNMKDVMLEKKYEDMIEIVP 612 Query: 447 VKKLSDALSVF 457 + LSD L Sbjct: 613 TETLSDVLENI 623 >UniRef50_D2RVL7 Putative circadian clock protein, KaiC n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RVL7_9EURY Length = 362 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 28/236 (11%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMK 124 + +LPR G + DR++ GGV S ++ G+ G GK+T LQ L LA+ Sbjct: 124 FDEAVDSDLPRLELGIEGLDRMIQGGVPERSLLVAMGSAGTGKTTFGLQFLEHGLARGEN 183 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNL---NMLSETSIEQICL-------------IAEE 168 +++T EES ++V A G P D + L+ ++ I + + EE Sbjct: 184 AVFITLEESRRRVIDSATEKGYPFDEYLAEDRLAVVDVDPIEMANSLQSITNELPTLIEE 243 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 +V+DS+ ++ M + R TR K GV ++ +++ A Sbjct: 244 FDAARLVLDSVSLLEMMYEDRATR-----RNEIYDFTRSLKEAGVTALLTSEASEESPYA 298 Query: 229 GPK-VLEHCIDCSVLLDGDADSRFRTLR----SHKNR-FGAVNELGVFAMTEQGLR 278 ++E+ D +L FR R K R E + +T+ G+ Sbjct: 299 SRYGIVEYLTDAVFVLQYIRPDDFRETRLAVEIQKIRDANHSREKKPYEITDDGIS 354 >UniRef50_Q3ADP9 Conserved domain protein n=3 Tax=Clostridia RepID=Q3ADP9_CARHZ Length = 296 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGEE 132 + R TG + FD VLGGG+ S +I GNPG+GK+ L+ L A++ K+LY T Sbjct: 1 MERLVTGIENFDEVLGGGIPLYSINIIAGNPGSGKTILVQNILFNAARRGLKSLYFTTVS 60 Query: 133 SLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE----------------QPKLMVI 176 Q +R DN + + + LI ++E +P ++VI Sbjct: 61 ESQFKMVRNLADFEFFDNSFLGEQIIYRDLGLILKKEGLNGAFAAVDDLMKKFRPDILVI 120 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH- 235 DS + + + V S A V E A+ L + +VG ++ + E Sbjct: 121 DSFKALR-SLVDSEKEFRAMVFELASKLAVW----ETTTFLVGEYIEE---ELSTLSEFA 172 Query: 236 CIDCSVLLDGDADSRF--RTLRSHKNRFGAVNELG---VFAMTEQGLR 278 D + L G + +F R LR K R + +F + + G++ Sbjct: 173 IADGIIYLYGQQERKFQKRYLRILKMR--GTGTIPGEHIFLIGKDGIK 218 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 80 GFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK 124 G + D +LGGG+ GS+ L+ G G GK+ L+ + AQ+ + Sbjct: 247 GIEGLDNLLGGGIYRGSSTLLAGATGTGKTLFSLKFALEAAQRGE 291 >UniRef50_D1Z1M4 Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1M4_METPS Length = 254 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 106/248 (42%), Gaps = 36/248 (14%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R TG D++ GGG + G L+ G PG GK+T LQ L + + ++VT EE+ Sbjct: 5 RLKTGIPGLDKMTGGGFLKGDTTLVTGPPGTGKTTFGLQFLMHGVLESQSGVFVTVEETP 64 Query: 135 QQVAMRAHRLGLPTDNLN---------MLSET------SIEQICLIAEEEQPKLMVIDSI 179 +++A A G L + SE I Q + + + +VID I Sbjct: 65 EKIANDALNFGWDLRKLEAEGRLRLYQLRSEMLQSGGAPIMQCLDVINSVKAERVVIDPI 124 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV----TKDGSLAGPKVLEH 235 ++ +V +R + K G+ +++ V ++ ++ LE Sbjct: 125 S-LYSMNVH----DPNDLRRELYAFVNYMKENGLTLLLTHEVPDIMSRTSKIS-DYGLEF 178 Query: 236 CIDCSVLLDG-DADSRF-RTLRSHKNRFGAVNELGV--FAMTEQGLREVSNPSAIFLSRG 291 +D ++L + +S R++ K R G+ +++ + + ++ +G+ E+ P Sbjct: 179 IVDSIIMLQYVEIESAISRSINVLKMR-GSSHDMAIRRYRISGKGI-EIEAP----FEGY 232 Query: 292 DEVTSGSS 299 + + SG++ Sbjct: 233 EGIMSGTA 240 >UniRef50_UPI0001C41E3C ATP-dependent protease S16 family n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41E3C Length = 724 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 333 LEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK-VTETSADLALLLAMVSSLRDRPLP 391 + + + + A++ ++ + +++ D+ V + V SA +++ A++S++ P+ Sbjct: 567 IALDSVQNVSAIIKKYTQVDISNHDIHVQFLQSYDGVEGDSASVSITAAVISAVEGIPID 626 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-----VPKKAPEGMQIFG 446 Q + + G + + G++ P+ +I AA+ G ++ ++P +N + KK + ++I Sbjct: 627 QSIALTGSLSVRGDVMPIGGATAKIEAAAEAGIKKVLLPKSNMEDVMLEKKYEDMIEIVP 686 Query: 447 VKKLSDALSVF 457 ++ + D L Sbjct: 687 IETIEDVLENI 697 >UniRef50_A6UWQ4 Peptidase S16, Lon-like protease n=6 Tax=Methanococcus RepID=A6UWQ4_META3 Length = 703 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%) Query: 350 GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 L + +D+F+ K+ SA A+ L ++SSL PL QD + G + L G+I Sbjct: 591 DLDLDTKDIFIQFSQSYSKIDGDSATTAVCLCILSSLLKIPLKQDFAITGSLDLNGDILA 650 Query: 409 VPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVFDD 459 + E+I+ A ++GF+R IVP +N+ EG+++ K L + + + D Sbjct: 651 IGGVNEKINAAKEYGFKRVIVPQSNMIDVIDVEGIEVIPAKTLGEIIPIVFD 702 >UniRef50_Q74NJ8 NEQ349 n=1 Tax=Nanoarchaeum equitans RepID=Q74NJ8_NANEQ Length = 600 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 8/144 (5%) Query: 322 MMANPRRVAVGLEQNRLAILLAVLHRHG----GLQMADQDVFVNVVGGVK-VTETSADLA 376 N + + G+ + + + G + + D++V V + + SA LA Sbjct: 449 AYGNGKIITSGILGKIAEQAIKTIEGYVKSVFGKDIKEYDIYVQFVQTYEEIEGDSASLA 508 Query: 377 LLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV-- 434 + LA +S+L PL Q V+ G + + G + PV +I A + GF+ I+P N+ Sbjct: 509 IALATISALTKTPLDQSFVITGSIDVKGRVLPVGGIIPKIEGAIEEGFKNIIIPKQNLKD 568 Query: 435 -PKKAPEGMQIFGVKKLSDALSVF 457 PK+ + I+GV + +AL++ Sbjct: 569 VPKEYFNNINIYGVSTIDEALNLV 592 >UniRef50_B6YWB4 ATPase n=3 Tax=Thermococcus RepID=B6YWB4_THEON Length = 234 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 44/247 (17%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGEE 132 + R STG K D++L GG++PG L+ G PG GK+TL +Q L + + LYVT EE Sbjct: 1 MERISTGIKGLDKMLEGGLIPGRTYLVKGGPGTGKTTLTIQFLTEGVKNGEDVLYVTLEE 60 Query: 133 SLQQVAMRAHRLGLPTDNLNMLS--------------------------ETSIEQICLIA 166 SL+ + +LG D+ + E I Sbjct: 61 SLKTLKEDMSKLGFNLDDPKFDAIDATPVTDKAHNIFAGTFYETFGKSFEKLTSAIQDKV 120 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 + + + ID + ++ + R T + G +++ Sbjct: 121 KSKHYSRVAIDPLTMLKLT-----VKDELDYRTTFIGFLKSLSELGATVILT------SD 169 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRFRTLRSH---KNRFGAVNE-LGVFAMTEQGLREVSN 282 L V E+ + + L + R LR K R + +E + + +T G++ V N Sbjct: 170 LKTSDVEEYLVSGVIELKTLEVNG-RLLRGIMIRKFRGSSFDEQIRPYRITTGGIK-VYN 227 Query: 283 PSAIFLS 289 IF+ Sbjct: 228 NENIFVE 234 >UniRef50_D2RH64 Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RH64_ARCPR Length = 236 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 91/239 (38%), Gaps = 38/239 (15%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEE 132 + TG + D +L GG++ G LI G PG GK+ L + L + A + +Y+T EE Sbjct: 8 FEKIPTGVEGLDVMLKGGLIKGRTYLIKGGPGTGKTILSMHFLVEGAKRGENVVYITLEE 67 Query: 133 SLQQVAMRAHRLGLPTDNLNMLSET---------------------SIEQICLIAEEEQP 171 +V LG N+ ++ + + E I + Sbjct: 68 PENEVRENMETLGFDLSNVTIVDLSPTSGHPIFSSLMGFESGIDVKTFENILQDIIGDNI 127 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTR-GVAIVMVGHVTKDGSLAGP 230 +VIDSI ++ + + + + R + L R K + V++ + G Sbjct: 128 DRVVIDSITMLKV-----ATPTETEYRASLLRLMRTLKVKFNATTVLISEL-------GN 175 Query: 231 KVLEHCIDCSVLLDG--DADSRFRTLRSHKNRFGAVNE-LGVFAMTEQGLREVSNPSAI 286 V ++ ++ + L R ++ K R +E + + +T +G+ + S Sbjct: 176 GVEDYLVNGMIELRTIEVKGRAVRGIKIVKMRGSDFDETIRPYRITNRGIEVYPDLSVF 234 >UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=RADB_METST Length = 232 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 26/236 (11%) Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 ++ LSDIS L T D++LGGG+ G G PG+GK+ + L+ L + + Sbjct: 1 MKTLSDISESVL--IPTNSS-LDKLLGGGIEKGCITQFYGPPGSGKTNIALKILYEATKN 57 Query: 123 M-KTLYVTGE-----ESLQQVAMRAHRLGLPTDNLNMLSE-------TSIEQICLIAEEE 169 K +Y+ E E +QQ+A G + N+ +L I+ I I +++ Sbjct: 58 GSKAIYMDTEGGLSLERIQQIA--GTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKD 115 Query: 170 Q-PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV----TKD 224 + +++IDSI ++ + ++ A L R ++ VAIV+ + D Sbjct: 116 KSIDMLIIDSIVALYRVEDGDPSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFDSD 175 Query: 225 GSLAGP---KVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGL 277 + P VL++ + ++ DS RT +++ A + F + ++G+ Sbjct: 176 DLIIEPIGGTVLKYWSKIIIEIEKSVDSLKRTATLQRHKTKAPGQSIKFEIIDRGI 231 >UniRef50_Q48N05 Circadian oscillation regulator KaiC homolog n=6 Tax=Gammaproteobacteria RepID=Q48N05_PSE14 Length = 515 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 37/234 (15%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT-LCKLAQQMKTLYVTGEES 133 P STG FD +L GG+ L+ G PGAGK+TL LQ L + LY+T E+ Sbjct: 22 PIVSTGNAGFDSILKGGLPNNRLYLLEGTPGAGKTTLGLQFLLDGVKAGESVLYITLSET 81 Query: 134 LQQVAMRAHRLGLPTDNLNMLSETSIEQ------------------------ICLIAEEE 169 +++ AH G D +++ +S E+ I ++ Sbjct: 82 SEELESAAHSHGWSLDGIDLFEFSSTEEVLGDEYEQSILHPWEAELGDTIKLIQQRVDKL 141 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT-KDGSLA 228 QP+ +V DS+ M + + R L ++ R + +++V +T G Sbjct: 142 QPRRLVFDSLSEMRL-----LAQDPLRYRRQVLALKQYFAGRDITVLLVDDLTASTGERD 196 Query: 229 GP-KVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELG---VFAMTEQGLR 278 L H + L D + R L+ K R V+ + F + GL Sbjct: 197 NHLHSLCHGVITLERLTLDFGAARRRLQVQKLR--GVDFVAGFHDFTIRRGGLE 248 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 24/244 (9%) Query: 54 YAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 G ++ + + +G KE D +L GG + G++ L+ G G+GK+T+ L Sbjct: 244 RGGLEVYPRLIAATHHVPFKAEPVPSGVKELDDLLVGGPLRGTSTLVTGPAGSGKTTVTL 303 Query: 114 QTLCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLI------- 165 L A+ K +E + + RA +G+ + I+QI Sbjct: 304 AYLAAACARGEKCTIYEFDERIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEF 363 Query: 166 -------AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 EE ++V+DS+ +MA + + Q+ E +YL++ GV ++ Sbjct: 364 AWRVRTEVEERGSTMIVVDSLNG-YMAAMPQEQQLILQMHELLSYLSQL----GVVTFLI 418 Query: 219 G-HVTKDGSLAGPKVLEHCIDCSVLL-DGDADSRFRTLRSH-KNRFGA-VNELGVFAMTE 274 GS++ + + D +L+ +A R R S K+R GA + + + Sbjct: 419 NPQHGLVGSMSTNLNISYVADSVILIRFFEAQGRLRKAISVLKHRTGAHEDAIRELRIDS 478 Query: 275 QGLR 278 +G+R Sbjct: 479 RGIR 482 >UniRef50_UPI00016C4483 putative circadian clock protein, KaiC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4483 Length = 506 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 83/216 (38%), Gaps = 33/216 (15%) Query: 72 EELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTG 130 + LP STG D VL GG+ G L+ G+ GAGK+TL LQ L + + KTL+++ Sbjct: 6 DSLPLVSTGVPGLDDVLCGGLPKGHLYLVEGDAGAGKTTLGLQFLLEGKRRGEKTLWISL 65 Query: 131 EESLQQVAMRAHRL-----------------GLPTDNLNMLSETSIE------QICLIAE 167 E+ Q+ A G P + + S IE + + + Sbjct: 66 SETESQLRATAASHRWDLSGVEIRNLTQTGSGAPDEQYSFFSPADIELNEITKAVKRVVD 125 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 P +V D +D++ + R L + R +++V T D S Sbjct: 126 AVAPDRVVFDPF-----SDIKLLARDPLRYRRQVLELREYFVGRKCTVLLVQERTSDNSS 180 Query: 228 AGPKVLEHCIDCSVLLDG---DADSRFRTLRSHKNR 260 P E + + L D + R LR HK R Sbjct: 181 RDPSA-EGVVQGVLALYQASPDFGRQRRRLRVHKLR 215 Score = 91.1 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 31/235 (13%) Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT-LCKL 119 ++ + STG D +LGGGV G+++LI G G GKST+ Q + + Sbjct: 237 PRLVAADHTEAPQDEEVSTGLPPLDAMLGGGVDRGASLLILGPAGVGKSTIASQLSVSAV 296 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLI-------------- 165 A+ +E+ + R LG+ L + QI Sbjct: 297 ARGEPVAVFLFDETARAYVARGEGLGMGVSELIRGGRLRVRQIDPAEFTPGELAHTVRRD 356 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 E +L+VIDS+ + P + L + + V V+ + +DG Sbjct: 357 VETSGVRLVVIDSLNGY----LSGMP-DERHLSMHLHELLTYLSYQNVVTVLT--MNQDG 409 Query: 226 ----SLAGPKVLEHCIDCSV---LLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 S+A P + + D ++ + + R R K R G +E+ + MT Sbjct: 410 FMGDSVAAPVDVSYLTDAALMLRYFESEGVVR-RAASVMKRRCGP-HEVHIREMT 462 >UniRef50_Q6L8L1 Circadian clock protein kinase kaiC n=127 Tax=Bacteria RepID=KAIC_ACAM1 Length = 522 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 39/242 (16%) Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK--LAQQMK 124 +D + E+ + T + FD + GG+ G L+ G G GK+ +Q L + Sbjct: 12 NDKNKVEVTKILTRIEGFDDISHGGIPLGRTTLVSGTSGTGKTMFAIQFLYHGIVHFDDP 71 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLN------------------MLSETS----IEQI 162 ++VT EES + + A G L + E IE+I Sbjct: 72 AVFVTFEESPKDIIQNALSFGWDLQQLMDDGKLFILDASPDPEGQDIAGEFDLSALIERI 131 Query: 163 CLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGH-V 221 + Q K + IDS+ + Q +V VR LT K GV VM V Sbjct: 132 QYAISKYQAKRVGIDSVTAIFQ---QYDAATV--VRREIFRLTARLKQIGVTTVMTTERV 186 Query: 222 TKDGSLAGPKVLEHCIDCSVL----LDGDADSRFRTLRSHKNRFGAVNELGV--FAMTEQ 275 + G +A V E D V+ L+G+ R RTL K R G + G F +T+ Sbjct: 187 DEYGPVARYGVEEFVSDNVVIVRNVLEGER--RRRTLEILKLR-GTSHMKGEYPFTITDD 243 Query: 276 GL 277 G+ Sbjct: 244 GI 245 Score = 91.9 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 37/263 (14%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGEESL 134 R S+G + D + GGG S IL+ G G GK+ L+ + L + + + EES Sbjct: 263 RVSSGVQTLDEMCGGGFFKDSIILVTGATGTGKTLLVSKFLEDACKNGDRAILFAYEESR 322 Query: 135 QQVAMRAHRLGLPTDN------LNMLS--------ETSIEQICLIAEEEQPKLMVIDSIQ 180 Q++ A+ G+ + L +L E ++QI E +P + IDS+ Sbjct: 323 AQLSRNAYSWGIDFEEMEQKGLLKILCTYPESAGLEDHLQQIKSEIAEFKPSRISIDSLS 382 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE-HCI-- 237 + ++ R+ +T FAK + T D L + E H Sbjct: 383 ALARGVSNNA------FRQFVIGVTGFAKQEEITGFFTN--TTDHFLGSHSITESHISTI 434 Query: 238 -DCSVLLDGDA--DSRFRTLRSHKNRFGAVNELGV--FAMTEQGLREVSNPSAIFLSRGD 292 D ++L R + K R G+ ++ G+ +++++ G E+ N F + Sbjct: 435 TDTILMLQYVEILGEMSRAINVFKMR-GSWHDKGIREYSISQHG-PEIKNAFHNF----E 488 Query: 293 EVTSGSSVMVVWEGTRPLLVEIQ 315 + SG+ V + R L +Q Sbjct: 489 GIISGTPTRVSLDEKRDLSRIVQ 511 >UniRef50_B2JVR0 Non-specific serine/threonine protein kinase n=6 Tax=Burkholderia RepID=B2JVR0_BURP8 Length = 504 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 36/257 (14%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESLQQ 136 STG KE D +LGGG++PG++ L+ G G GK+T ++ L L + Y+ +E+L+ Sbjct: 259 STGVKELDALLGGGLIPGTSTLLVGPSGVGKTTTSVRCALTALQRGEAVKYLLFDETLRT 318 Query: 137 VAMRAHRLGLPTDNLNMLSETSIEQIC--------------LIAEEEQPKLMVIDSIQVM 182 + R+ +L + D + S++QI E++ ++V+DS+ Sbjct: 319 LMSRSRQLDMALDGYIDNGQLSLQQIDPAEMSPGQFATVVREAVEQDGASMVVLDSLNAY 378 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV-GHVTKDGSLAGPKVLEHCIDCSV 241 +Q+ PG + L + +GV ++V G G++A L + D + Sbjct: 379 ----MQAMPGHRYLL-LQMHELLSYLNQQGVTTLLVLGQHGLIGNVASEVDLSYLSDALL 433 Query: 242 LLD-----GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 L G+ S L+S + + F + GLR V P L + V + Sbjct: 434 LFRFFESAGEVLSALSVLKSRTSEHERT--IREFRVDSGGLR-VGPP----LKDFEGVLT 486 Query: 297 GSSVMVVWEGTRPLLVE 313 G + G +PLL E Sbjct: 487 GL---PSYRGAQPLLGE 500 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 31/224 (13%) Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT-LCKLA 120 + + S S +E R STG D VL GG++P L+ G PGAGK+TL L L + Sbjct: 3 RSEPASLNSTDEPGRISTGVAGLDDVLNGGLIPNRIYLVEGVPGAGKTTLGLHFLLDGIR 62 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNM------------------------LSE 156 + LY+T E+ ++A A + L++ L E Sbjct: 63 RGESGLYITLSETAVELAAVARSHHWSLEGLSIHELVSEDGLAADAGQSVLHPSEVELGE 122 Query: 157 TSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIV 216 T ++++ + P+ +V DS+ + + + R L +F TRG + Sbjct: 123 T-VDEVRRKVLDLNPRRIVFDSLSELRL-----LAQDALKYRRQVLALKQFFSTRGCTVW 176 Query: 217 MVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNR 260 ++ T + H + + + R LR K R Sbjct: 177 LLDDKTSQLGDLQLHSITHGVIELDQRVQEYGAEQRRLRVVKMR 220 >UniRef50_C8SDE7 Putative circadian clock protein, KaiC n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SDE7_9RHIZ Length = 495 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 33/240 (13%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA--QQMKTLYVTGE 131 L R TG + FD ++ GG+ G ++GG PG+GK+ Q L + ++VT E Sbjct: 13 LERVRTGIEAFDDLVMGGLPRGRTTIVGGTPGSGKTVFATQFLAHGITMRDEPGVFVTFE 72 Query: 132 ESLQQVAMRAHRLGLPT------DNLNMLSETS----------------IEQICLIAEEE 169 ES ++ + G + L + + + ++ A Sbjct: 73 ESPAEIEVNMASFGWDIRGWRENNKLVFVDASPRDHDQMIIGNFDLSGLLTRVLHAARHA 132 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD-GSLA 228 K +V+DS+ + V VR + K G+ ++M + G ++ Sbjct: 133 AAKRIVLDSVTQLFDHFVA----EQTSVRRELLRIATALKREGLTVLMTAERNSEYGDIS 188 Query: 229 GPKVLEHCIDCSVLLDG--DADSRFRTLRSHKNRF--GAVNELGVFAMTEQGLREVSNPS 284 ++ E D V+L D + R RT+ K R E+ + + +QG+ V S Sbjct: 189 RHRIEEFVADNVVILRNALDRERRRRTIEVLKMRGSRHVEGEVPITLVVKQGIVAVPLSS 248 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 31/239 (12%) Query: 63 VQKLSDISLEEL---PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CK 118 LS + LE+ R ++G E DR+ GGG S L+ G G GK+ L+ L Sbjct: 243 AVPLSSLRLEQQSSTKRVTSGNPELDRMCGGGFFRDSVTLVSGATGTGKTLLVTNFLAGG 302 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLN----------MLSETSIEQ----ICL 164 A + L V EES Q+ A G+ + + ++ + Sbjct: 303 AAAGERALLVGYEESRGQLFRNARGWGVDFEAMEADGRLKIVCIYPEAQNLPDHLLMVRE 362 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 + EE +P + IDS+ + S RE LT F K +A + K Sbjct: 363 LVEEFKPDRIAIDSLSALERIA------SETGFREFLISLTSFIKKHEIAGLCTA-TNKS 415 Query: 225 ---GSLAGPKVLEHCIDCSVLLD--GDADSRFRTLRSHKNRFGAVN-ELGVFAMTEQGL 277 G A + + D +LL + D R + K R + ++ FA+ G+ Sbjct: 416 LVGGQSASEQHISTLTDSIILLRYIQEGDFMHRGIMVLKMRGSEHDKQIRRFAIDGAGM 474 >UniRef50_B5I9Z9 KaiC domain protein n=3 Tax=Aciduliprofundum boonei T469 RepID=B5I9Z9_9EURY Length = 227 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 27/223 (12%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R TG + D +L GG+ G + + G G GK+T +Q + + L + ++++ EE Sbjct: 2 RIKTGIEGLDDMLNGGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 61 Query: 135 QQVAMRAHRLGLPTDNL--NMLSETSIE-------------QICLIAEEEQPKLMVIDSI 179 V A + G + L ++ I + +E + + +DSI Sbjct: 62 DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 121 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT-KDGSLAGPKVLEHCID 238 ++ M S+ + R+ L + K G V V K+ ++ ++E+ +D Sbjct: 122 SLITM-----MYDSIDEKRKVVFKLAKSIKESGATAVFTAEVDPKNPKVSRDGIVEYVVD 176 Query: 239 CSV---LLDGDADSRFRTLRSHKNRFGA-VNELGVFAMTEQGL 277 + L+ + + T+R K R E+ ++ + E G+ Sbjct: 177 GVILLSFLEENNVLKL-TIRVLKMRRTQHSREVKLYEIGEGGI 218 >UniRef50_B9XHU6 Putative circadian clock protein, KaiC n=1 Tax=bacterium Ellin514 RepID=B9XHU6_9BACT Length = 336 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 38/235 (16%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESLQQ 136 +TG FD + GGG+ L+ G PG+GKS LQ + ++ + + V+ +ES +Q Sbjct: 14 ATGIPGFDEITGGGLPENRTTLVMGGPGSGKSVFALQSLVEEVRRGEAGVLVSFQESPRQ 73 Query: 137 VAMRAHRLGLPT-----DNLNMLSE-------TSIEQ--------ICLIAEEEQPKLMVI 176 + A G D L +L SIE I ++A E + K +V Sbjct: 74 IVENAATFGWDLAELEKDKLVILDARIRPNTFNSIELYLSGMLAGIRVVANEMRAKRIVF 133 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK--VLE 234 DS + G R A L + G+ V+ + P+ ++ Sbjct: 134 DSFDAFL-----ALLGDRTTERHEIARLRDWLLESGLTSVITSQSEVEDMFLTPRQTSMQ 188 Query: 235 HCIDCSVLLDGD--ADSRFRTLRSHKNRFGA--VNELGVF------AMTEQGLRE 279 DC V LD + R+LR K R NE V +T G+ E Sbjct: 189 FMADCVVRLDYRITNHTSSRSLRVLKYRGSGFIENEFPVVIGDKGMELTSTGIVE 243 >UniRef50_C7DGV1 Peptidase S16, Lon-like protease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGV1_9EURY Length = 644 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 7/154 (4%) Query: 309 PLLVEIQALVDHSMMA-NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 P++ E+ S P + + + A++ +H G +A D+ V + + Sbjct: 469 PIVAEVTPASSRSEGKFIPTGKLGKIANEAVKNVSAIIKKHIGRDVASYDIHVQFLQTYE 528 Query: 368 -VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 + SA +++ ++++S++ + P+ Q + + G + + G + PV ++ A G RR Sbjct: 529 GIEGDSASISVAISVLSAMENLPIDQSIAMTGSLSVRGTVLPVGGVTSKVEAAIAAGMRR 588 Query: 427 AIVPAANVPKKAP-----EGMQIFGVKKLSDALS 455 I+P +N + ++I V+ L+D + Sbjct: 589 VIIPQSNADDVYLSKSMRKRIKIIPVRTLADVIK 622 >UniRef50_B4SN90 Non-specific serine/threonine protein kinase n=2 Tax=Proteobacteria RepID=B4SN90_STRM5 Length = 498 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 30/181 (16%) Query: 71 LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVT 129 ++ R TG + D +LGGG+ L+ G PG+GK+TL LQ L + L + + LY+T Sbjct: 1 MQAYMRTVTGVEGLDSILGGGLPQARLYLLEGPPGSGKTTLSLQFLLEGLRRGERCLYIT 60 Query: 130 GEESLQQVAMRAHRLGLPTDNLNMLSETSIE------------------------QICLI 165 E+ +++ A G D L++ S E I Sbjct: 61 LSETAEELREVAAAHGWSLDGLHLFELGSAEGAMGNGRLQSVLHSWEMELDETVNLIMSK 120 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 + P +V DS+ + + S + R L +F + +++V +T G Sbjct: 121 VDSIGPTRVVFDSLSELRLLAQDSL-----RYRRQILALKQFFAPKSATVILVDDLTSTG 175 Query: 226 S 226 Sbjct: 176 E 176 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 29/246 (11%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQ 135 S+G E DR+LGGG + G++ L+ G G+GK+ + LQ + + + +E + Sbjct: 250 VSSGVDEIDRLLGGGPLRGTSTLLTGPAGSGKTNVALQYVWAACERGERCCIFEFDERIG 309 Query: 136 QVAMRAHRLGLPTDN------LNMLSETSIE--------QICLIAEEEQPKLMVIDSIQV 181 + RA L + D L +L E + + E+ ++VIDS+ Sbjct: 310 TLLARASALDIDLDKHLHSGLLEILQMDPAEVSPGEFSWNLRKVVEQRNCSVLVIDSLNG 369 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVG--HVTKDGSLAGPKVLEHCIDC 239 ++ + + Q+ E +YL +GVA ++ H G + + D Sbjct: 370 -YVTAMPQEKQLMLQLHEMLSYLN----QKGVATFLINPQHGLVGTMSTGSLNVSYIADA 424 Query: 240 SVLL-DGDADSRFRTLRSH-KNRFGA-VNELGVFAMTEQGLREVSNPSAIF---LSRGDE 293 VL +A R R S KNR GA + + + +G+ VS P A F L+ E Sbjct: 425 VVLFRFFEAKGRIRKAISVIKNRGGAHEDTIRELKIDGRGI-TVSAPLADFQGILTGTPE 483 Query: 294 VTSGSS 299 S+ Sbjct: 484 FVGDSA 489 >UniRef50_D2EGD6 Peptidase S16, Lon protease n=2 Tax=Euryarchaeota RepID=D2EGD6_9EURY Length = 641 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 75/155 (48%), Gaps = 9/155 (5%) Query: 310 LLVEIQALVDHSMM-ANPRRVAVG----LEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 L++ I+A+V SM + +A G + Q + + A++ + + D D+ + + Sbjct: 460 LMLPIEAIVTKSMRRGSGEIIATGKLGEIAQEAVKNVSAIVKLYSNKPLTDYDIHIQFLQ 519 Query: 365 GVK-VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 V SA +++ ++++S+L + P+ Q + + G + + GE+ PV ++ A G Sbjct: 520 AYSGVEGDSASVSVAISILSALTNIPIKQSIAMTGSLSIWGEVLPVGGVSAKVEAAINAG 579 Query: 424 FRRAIVPAANVPK---KAPEGMQIFGVKKLSDALS 455 + I+PA+N+ P+ ++I + D + Sbjct: 580 IKEVIIPASNIDDLVLSDPKVIKITAADSIIDVIE 614 >UniRef50_C1VBQ7 RecA-superfamily ATPase possibly involved in signal transduction n=9 Tax=Halobacteriaceae RepID=C1VBQ7_9EURY Length = 420 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 24/243 (9%) Query: 32 NTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLE-ELPRFSTGFKEFDRVLGG 90 N +E A S + + D E ++ R G + D ++ G Sbjct: 147 NPFSEDFADAMGSAPAFGGESEGGQNPPDTSTESFDDEEFESDIDRLDIGIEGLDEMILG 206 Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESLQQVAMRAHRLGLPTD 149 GV S ++ G G GK+T LQ L L K +Y+T EES ++ A G P Sbjct: 207 GVPKRSLMVTIGTAGTGKTTFGLQFLNHALENGEKAVYITLEESRDRIFDTAEEKGWPFR 266 Query: 150 NL---NMLSETSIEQI-----CLIAEEEQPKLM--------VIDSIQVMHMADVQSSPGS 193 + L+ ++ + + + P+L+ V+DS+ ++ M Sbjct: 267 KYADEDRLAIIDLDPVEMANSLASIQNDLPRLVADFGAERLVLDSVSLLEM-----MYDH 321 Query: 194 VAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL-AGPKVLEHCIDCSVLLDGDADSRFR 252 ++ R R K GV ++ ++ + ++E+ D +L S FR Sbjct: 322 PSKRRSQVFDFARALKDAGVTTLLTSEAKENNPYSSRHGLVEYLADAVFVLQYVRPSDFR 381 Query: 253 TLR 255 R Sbjct: 382 ETR 384 >UniRef50_Q9XW87 Protein Y75B8A.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q9XW87_CAEEL Length = 773 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 74/454 (16%), Positives = 145/454 (31%), Gaps = 102/454 (22%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLA-----------------QQMKTLYVT------ 129 V G + G PG GK+++ + + + YV Sbjct: 327 VKGMILCFTGPPGIGKTSIAKAIAESMGRKFQRVSLGGIRDESDIRGHRRTYVAAMPGRI 386 Query: 130 ---------------------------GEESLQQVAM---------RAHRLGLPTDNLNM 153 G S + + H L +P D + Sbjct: 387 IEALKTCKTNNPVFLLDEVDKLYSGNQGSPSAALLELLDPEQNSTFHDHYLNIPFDVSKI 446 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT--RFAK-T 210 + + I + + +L +I+ + + + + R+ + + K Sbjct: 447 MFIATANDIDRLEPALRDRLEIIE-MSGYSLKEKVKICENHLLTRQLTKHCISHDYVKLE 505 Query: 211 RGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFG----AVNE 266 R + M+ T + AG + LE + + R + + G V E Sbjct: 506 RQAIVAMIEEYTME---AGVRQLERNVGAIC-----RNVALRLAEALNSDPGADVLPVME 557 Query: 267 LGVFAMTEQGLREVSNPSAI----FLSRGDEVTSGSS--VMVVWEGTRPLLVEIQALVDH 320 L + ++ + ++ + + + + +G + V G R + +E Sbjct: 558 LPI-QISASNIHKILKNKHMKRVKIVEKMRPLPAGVCFGLSVTTIGGRVMPIE-----AS 611 Query: 321 SMMANPRRVAVGLEQNRLAILLAVLH-------RHGGL-QMADQDVFVNV-VGGVKVTET 371 + V G L + V GL + DQD+ V++ G V Sbjct: 612 KSKGTGKIVTTGHLGKVLKESILVAKGWLSANSERLGLGTLEDQDIHVHLPAGAVNKDGP 671 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA L A+VS + PL D V GE+ L G + P+ +E++ A + G RR ++P Sbjct: 672 SAGTGLACALVSLATNIPLRSDAAVTGEISLTGHVLPIGGVKEKVLAAQREGLRRVVLPK 731 Query: 432 AN------VPKKAPEGMQIFGVKKLSDALSVFDD 459 +N + + M + + + D + D Sbjct: 732 SNEEEYLKMDEDIRLEMDVVLAETIEDVIGAMMD 765 >UniRef50_A5D488 RecA-superfamily ATPase n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D488_PELTS Length = 460 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 27/225 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTLYVTGE 131 + + TG K FD +L GG+V G+A+L+ G PGAGK+T ++ + + + VT E Sbjct: 1 MDKVPTGIKGFDELLLGGIVRGNAVLVEGVPGAGKTTFGIEFIYRGITEFGEPGVIVTCE 60 Query: 132 ESLQQVAMRAHRLGLPTDNL-------------NMLSETSIEQICLIAEEEQPKLMVIDS 178 + Q + A G L +L++ + + +A E + +++DS Sbjct: 61 QLPQSMYRDALNFGWDLRALEEAGKLRILCTSPEVLADPEVNLVEEVAREVGARRILVDS 120 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 I S +R + G+ ++V +G+ E+ +D Sbjct: 121 ISHFR-----SVFDDPLSLRRLVYGFCNGLRRLGLTALLVKERENEGNRE-YAFEEYVVD 174 Query: 239 CSVLLDGDAD---SRFRTLRSHKNRFGAVNELG--VFAMTEQGLR 278 + L+ R R L K R G + G F +T++G++ Sbjct: 175 AVIRLENKERPGLHRHRVLEISKTR-GQEHIPGKHTFRITDEGIK 218 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 26/228 (11%) Query: 71 LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTLYV 128 E TG D +L GG+ G+ + + G G GK+ L +Q L + A K +++ Sbjct: 232 AHENELLHTGVPGLDNLLRGGLPRGACVTVVGGSGTGKTLLGMQFLARGALDYGEKGIFL 291 Query: 129 TGEESLQQVAMRAHRLGLPTDNL----------NMLSETSI-EQICLIAEE---EQPKLM 174 + EE + A L LSE I E I + E+ + Sbjct: 292 SLEEIPSHIMANARHFNWDLHTLQEQGMIKIIYMPLSEMEIDETIIGLGEQAGTFGASRL 351 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDSI + ++ + E L + +++ + + +V+ Sbjct: 352 VIDSIYGLLSRIDNAAV-----LHEKLYSLVTHLNSLNCTTLLISPAWETAAGGKAEVIH 406 Query: 235 HCIDCSVLLDGD--ADSRFRTLRSHKNRFGAVNELG--VFAMTEQGLR 278 + ++LL + + R R L +K R G + G + + + G++ Sbjct: 407 SVVQGTILLKSNMLQNRRVRQLEIYKMR-GVNHATGNHLLEIGDSGMQ 453 >UniRef50_A2BJC1 RecA-like ATPase (KaiC-like) n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BJC1_HYPBU Length = 497 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 25/212 (11%) Query: 75 PRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEES 133 +G + D++L GG G+ +L+ GNPG GKST + + + + +++Y+ E Sbjct: 16 ETVPSGIEGLDKILLGGFPRGAVVLLAGNPGTGKSTFAARFVYEGCRRGERSIYLNFVEP 75 Query: 134 LQQVAMRAHRLGLPTDNLN------------MLSE----TSIEQICLIAEEEQPKLMVID 177 + LG+ + + E T +E + + E + K + ID Sbjct: 76 RRDFYDHMTMLGMDFEECERKGLFHYMEAVTIADEDALITQLEDLVKLVMETKAKRVAID 135 Query: 178 SIQVMHMADVQSSPGSVAQVRETAA-YLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 SI M ++VRE K V V++ + G + E Sbjct: 136 SITAML-----QIVKVPSRVRELLQNIFVNGFKPHQVTTVLIAEHPYGAKVVGYGIEEFI 190 Query: 237 IDCSVLLDGDADSRF--RTLRSHKNRFGAVNE 266 +D +L R L K R+ +++ Sbjct: 191 VDAVFILKYRLSRGKIQRVLEIRKARWAPIHQ 222 >UniRef50_B5YK35 ATP-dependent protease La 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK35_THEYD Length = 667 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Query: 353 MADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 D+ +++ G + + SA + +A++S +RP +D+ V GE+ L+G I PV Sbjct: 554 FDAFDIHIHIPQGAILKDGPSAGATIAMALISLFTNRPARRDVAVTGELTLSGRILPVGG 613 Query: 412 GQERISEAAKHGFRRAIVPA------ANVPKKAPEGMQIFGVKKLSDALSVF 457 +E+I A + G + IVP N+P +G++I ++K+ D + Sbjct: 614 IKEKILAAKRAGVKTVIVPYRNKVDIENLPDDFKKGVEIIFIEKIEDVIDTI 665 >UniRef50_D2LZH6 Putative circadian clock protein, KaiC n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZH6_BACS4 Length = 476 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 104/269 (38%), Gaps = 46/269 (17%) Query: 78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA--QQMKTLYVTGEESLQ 135 ++G + D +L GG GS+IL+ G PG GK+ L +Q L A +Y+T EE Sbjct: 6 TSGIEGLDYILNGGFPTGSSILLEGAPGTGKTILGMQFLYDGALNNNESGIYITFEEFPD 65 Query: 136 QVAMRAHRLGLPTDNLNMLSETSIEQIC------------------LIAEEEQPKLMVID 177 Q+ G +L E + IC + +E K +VID Sbjct: 66 QIYNDMDSFGWDIKSLE--KENKLRVICISPDVLLEQMKKSNGIFDQVIKEINCKRIVID 123 Query: 178 SIQVMH--MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 S+ + M + + + ++ +R + ++ +++ T P + + Sbjct: 124 SLSLFSFGMENQKEARDNIYTIRN-------ILRKHRLSSILIHEQTNKSEEEIP-FVSY 175 Query: 236 CIDCSVLLDGDADS---RFRTLRSHKNRFGAVNE-LGVFAMTEQGLREVSNPS-----AI 286 +D + L R RTL K R + E ++ + G+ + + S AI Sbjct: 176 VLDGVIRLSLQGHHTIYRKRTLEVLKMRGCCIKEGEHIYRINNAGIDLIPSLSMVEDKAI 235 Query: 287 FLSRGDEVTSGSSVMVVWEGTRPLLVEIQ 315 L +++G + + R LL IQ Sbjct: 236 TLHEDTTISTG---VPALD--RLLLGGIQ 259 >UniRef50_Q2IEE4 Putative circadian clock protein, KaiC n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEE4_ANADE Length = 494 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 31/228 (13%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK-TLYVTGE 131 L R STG + D+VLGGG+ S ++ G PG+GK+ L LQ L A+Q K +LY T Sbjct: 9 RLERVSTGVEGLDQVLGGGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKRSLYFTTL 68 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSET-----------------SIEQICLIAEEEQPKLM 174 + + H G + +L E ++ + EE +P L+ Sbjct: 69 SEPS-LKLVRHMQGFRFFDPRLLDEKVRIVDLGSRLRAHDPAAALATVVERVEESEPDLV 127 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDS + +H D+ P + R + G ++VG + P+ Sbjct: 128 VIDSFKALH--DLSREPE---RERTLTYDFAVQMASWGATTLLVGEYAAADAGQLPEFA- 181 Query: 235 HCIDCSVLLDG--DADSRFRTLRSHKNRFGAVNELGV--FAMTEQGLR 278 D V L +R R L K R G+ GV F + G+ Sbjct: 182 -IADGIVRLGTAPQDLNRIRELEIQKLR-GSAFVPGVHLFEIGGDGIS 227 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 26/210 (12%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQ 135 STG + D + GG+ P S+ + G G GK+ L L L + A + + T EE+ Sbjct: 252 LSTGVAQLDALFHGGIPPASSTTVMGGTGTGKTLLGLHFLVEGARRGEPGVLFTLEETPD 311 Query: 136 QVAMRAHRLGLPTD--------------NLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 Q+ A + + + ++ + ++ E + +VIDS+ Sbjct: 312 QLRDIASKFPFGFAGLEEQGLVHLRYAPPIELSTDRFLHEVRREVERLGARRVVIDSLTS 371 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTK---DGSLAGPKVLEHCID 238 + + V S + RE L + + G +VM +T+ G L+G V D Sbjct: 372 LALGAV-----SERRYRELVYALAKHLRGAGATLVMTLEITELLGTGQLSGHGV-SFASD 425 Query: 239 CSVLLDG-DADSRF-RTLRSHKNRFGAVNE 266 V L + R R + K R VN Sbjct: 426 NVVQLRYVELGGRLDRAVSGIKARGVDVNT 455 >UniRef50_Q3IN66 Probable KaiC-like transcriptional regulator 1 n=2 Tax=Halobacteriaceae RepID=Q3IN66_NATPD Length = 496 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 96/262 (36%), Gaps = 19/262 (7%) Query: 35 TEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEE-LPRFSTGFKEFDRVLGGGVV 93 E + G K+ + L +TG E D + GGG Sbjct: 206 VEKNRGRGQQSGTHGVEIRAHGVEVFPKLTPPESPAERRGLDPVATGVGELDSLTGGGFE 265 Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVT-GEESLQQVAMRAHRLGLPTDNLN 152 G+ I G PG GK+T+ L AQQ +T V EE ++ R +GLP D L Sbjct: 266 HGTTTFISGPPGVGKTTVGAYFLFWAAQQGETAAVYLFEERIETFEKRCRAIGLPIDALR 325 Query: 153 ---MLSETSIEQICLIAEEEQ--PKLMVIDSIQVMHMADVQSSPGSVAQ-----VRETAA 202 L T IE + AEE + V+D M D S + Q ++ Sbjct: 326 DDGRLKLTRIEPNAMSAEEFANIVRTDVVDGGVTTAMIDGFSGYTTSIQGEQDTLKRDLH 385 Query: 203 YLTRFAKTRGVAIVMVG--HVTKDGSLAGPKVLEHCIDCSVLLDG-DADSRF-RTLRSHK 258 L R VA+ M H + A + + D + L + R + K Sbjct: 386 ALLRHLNELDVAVFMTEAVHQITGLTSATSRNISPLADNLLFLTYVELGGSLGRVIGMLK 445 Query: 259 NRFGAVNELGV--FAMTEQGLR 278 R G+ E G+ F +T++G++ Sbjct: 446 KRTGS-FESGIREFEITDEGVQ 466 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 71/207 (34%), Gaps = 34/207 (16%) Query: 79 TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESLQQV 137 +G +++L GG + LI G G GK+TL + L L+V GEES ++ Sbjct: 13 SGVVGLNQLLRGGYLRNRMYLIVGTHGTGKTTLCSHFVEAGLDAGETALFVHGEESASEL 72 Query: 138 AMRAHRLGLPTDNLNMLSETS------------------------IEQICLIAEEEQPKL 173 A + G+ L EQI E P Sbjct: 73 RENAAQFGIDIAGAEFLDLGPDSAFFEKDETYDLVDASEVEGKRYTEQIREAITEIDPDR 132 Query: 174 MVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL 233 +VID I + + S R+ L RF K + ++ V+ S A ++L Sbjct: 133 LVIDPITQLRYIEA-----SDYHYRKRVLSLIRFLKEHEITVLGTTSVSDTHSTA-SEIL 186 Query: 234 EHCIDCSVLLDGDADSRFRTLRSHKNR 260 D V L R + KNR Sbjct: 187 S-ISDGVVRLSRSETG--RRIEVEKNR 210 >UniRef50_B1ZPK0 Putative circadian clock protein, KaiC n=3 Tax=Bacteria RepID=B1ZPK0_OPITP Length = 518 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 23/226 (10%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R S G E D ++GGG++ G ++LI G G GKS L Q + L + V EE Sbjct: 265 RLSVGVVELDTLMGGGILEGDSVLIAGPSGTGKSVLATQFIDTGLQAGEAGIIVVFEERP 324 Query: 135 QQVAMRAHRLGLPTD--------------NLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 A RA LGL L++ + ++++I + + +VIDS+ Sbjct: 325 AGYARRAASLGLNFQPALDAGTLEILYLRPLDLSVDETMQEILDAVKRTGAQRLVIDSLV 384 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGP--KVLEHCID 238 ++ +PG A RE+ + GV ++ + + + D Sbjct: 385 GF---EMALAPGFRADFRESLYRMIAALTGAGVTVLSTVEIEDSFTSFQFSHYAISFLTD 441 Query: 239 CSVLLDG-DADSRFR-TLRSHKNRFGA-VNELGVFAMTEQGLREVS 281 + L + D + R L K R G ++ + ++E GL VS Sbjct: 442 DIIRLRYVEIDGQLRKILAVVKMRGGNHSKDIREYVISETGLLLVS 487 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 28/252 (11%) Query: 49 ERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGK 108 ++ + + K + +++ +LP TG + D +LGGG+ S LI G PG GK Sbjct: 2 KKRADRSSRTVPTKPRPAGKVAIRQLP---TGVRGLDEILGGGLPEYSFNLIAGTPGCGK 58 Query: 109 STLLLQTL-CKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNM--------LSETSI 159 +TL Q + LY T +R + D M LSE + Sbjct: 59 TTLAHQIAFANATAERPALYFTVLGEPALKMLRYQQQYSFFDETKMGTAIRFINLSEVLL 118 Query: 160 EQ--------ICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTR 211 EQ I P ++V+DS + + + + + G+ +++ L + Sbjct: 119 EQDLDGVLKEITQQVVAANPGVVVVDSFRTV-LRKIPAHDGAEMELQAFVQRLAMLLTSF 177 Query: 212 GVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG--DADSRFRTLRSHKNRFGAVNELGV 269 +VG T+ P + D + L + +S R L+ K R G + G+ Sbjct: 178 QATTFLVGEYTEGEMRDNP--VFTVADGLLWLSQIVERNSVVRKLQVIKLR-GQASVPGL 234 Query: 270 --FAMTEQGLRE 279 F + GL+ Sbjct: 235 HTFRIGSYGLQA 246 >UniRef50_UPI0001C334A3 circadian clock protein KaiC n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C334A3 Length = 504 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 30/198 (15%) Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTL 126 ++L+ + + T D + GG+ G L+ G G GK+ L +Q L + L Sbjct: 14 LALKGVRKIRTMIDGLDEITHGGLPLGRTTLVSGTSGTGKTLLAIQFLYNGIKYFDYPGL 73 Query: 127 YVTGEESLQQVAMRAHRLGLPTD------NLNMLSETS----------------IEQICL 164 +VT EES + A+ G L +L + IE+I Sbjct: 74 FVTFEESPDDIIENAYSFGWDLQKLVDDGYLFILDASPNPEGQEIFENFDLSALIERIQY 133 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGH-VTK 223 + + KL+ IDS+ + +VA +R L K + ++ V + Sbjct: 134 AIHKYKAKLVSIDSVTAVFQQ-----YNAVAVIRREIFRLVARLKQLEITSILTTERVEE 188 Query: 224 DGSLAGPKVLEHCIDCSV 241 G +A + E D + Sbjct: 189 YGQIARFGIEEFVSDNVI 206 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 33/232 (14%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESL 134 R S+G + D + GGG + S IL+ G G GK+ LL + L + Q+ +T+ EES Sbjct: 263 RISSGVQTLDEMCGGGFLKDSIILVTGITGTGKTLLLSKFLEEGCHQEERTILFAYEESK 322 Query: 135 QQVAMRAHRLGLPTDN------LNMLS--------ETSIEQICLIAEEEQPKLMVIDSIQ 180 Q++ A G+ L +L E ++ I + +P + IDS+ Sbjct: 323 AQLSRNAMSWGIDFGKMEQKGLLKLLCTYPESASLEDHLQIIKSEISKFKPSRIAIDSLS 382 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE----HC 236 + +++ R+ +T + K + + T D + + E Sbjct: 383 ALARGVTKNA------FRQFIIGITGYVKQEEITVFFTN--TTDQFIESHSITESHVSTI 434 Query: 237 IDCSVLLDG--DADSRFRTLRSHKNRFGA--VNELGVFAMTEQGLREVSNPS 284 D ++L + + + + K R G+ + + + G + N S Sbjct: 435 TDTILMLKYIENNEKMSKIINVFKMR-GSWHDKSIREYTINHNGFI-IENSS 484 >UniRef50_D2RQC1 Putative circadian clock protein, KaiC n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RQC1_9EURY Length = 492 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 25/231 (10%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGE 131 E +G D ++G G + I G GAGK++ Q + K A+ K+ E Sbjct: 241 ESNLLRSGIDGLDELIGRGFDQRTVTFISGPTGAGKTSTGTQFMAKAAENGLKSTIYLFE 300 Query: 132 ESLQQVAMRAHRLGLPTDNLN--------------MLSETSIEQICLIAEEEQPKLMVID 177 E +Q R+ +G+P L + SE + + + +++ID Sbjct: 301 EDVQTYEHRSESIGIPVSRLREEGTLSTTEIEPRALSSEEFAHTVKRQIDRQGTDIVMID 360 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL--AGPKVLEH 235 I + S G + LTR+ K+RGV +++ + + + A L + Sbjct: 361 GIGGYTV----SIRGDETDLIRDLHGLTRYLKSRGVTVLITNEIAEITGISSATDSNLSY 416 Query: 236 CIDCSVLLDG-DADSRFRTLRSH-KNRFGA-VNELGVFAMTEQGLREVSNP 283 D L + D R + K R G + L F +TE G+R V +P Sbjct: 417 VADNIAFLSYVEMDGSLRKVIGVLKKRTGGFEHTLREFEITEDGIR-VGDP 466 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 37/229 (16%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEESLQ 135 +G D +L GG+V G L+ G PG GK+ L + L + + L++ GEES + Sbjct: 8 IRSGVDGLDELLCGGLVTGRMYLVQGKPGTGKTLLGMHFLEEGLRNDETVLFIHGEESRE 67 Query: 136 QVAMRAHRLGLPTDN------------------LNMLSETSIE------QICLIAEEEQP 171 ++ +G+ + +++ + IE I E P Sbjct: 68 EILANGEAVGVDISDAAFLDLGPDSEFFTEDYSYDLVDPSDIERERYTQDIHDAIREIDP 127 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 +VID I + + Q R+ RF K V ++ + + Sbjct: 128 DRVVIDPITQLRYVEAND-----HQFRKRILSFMRFLKQGEVTVITTATPSPEQEY--DT 180 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGV--FAMTEQGLR 278 + D + LD R ++ K+R E G + + G+ Sbjct: 181 EIRSLSDGIIELDRGEGG--RRIQVSKHRALGQRE-GDHGMEIRDDGIE 226 >UniRef50_Q0W7M8 Putative uncharacterized protein n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W7M8_UNCMA Length = 231 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 29/237 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEE 132 + STG + D +L GG I++ G G GKSTL LQ L L K++Y++ EE Sbjct: 1 MKLLSTGVQGLDELLQGGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLEE 60 Query: 133 SLQQVAMRAHRLGLPTDN--------LNMLSETSIEQICLIAEEEQPKLM--------VI 176 ++ A G L L I+ + E P+L+ VI Sbjct: 61 RESEIVESAEGYGWDLQTYIDNNSLILIRLDPNDIKTTLTRIKNEMPRLIKTFGATRLVI 120 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTK-DGSLAGPKVLEH 235 DSI + M A+ R + K GV ++ ++ D + ++E+ Sbjct: 121 DSITLFEM-----MFSDEAERRLNLFEIFAILKETGVTALITSEASRADAYSSRYGLVEY 175 Query: 236 CIDCSVLLDGDADSRFRTLR----SHKNRFGAVNE-LGVFAMTEQGLREVSNPSAIF 287 D ++L + R ++ K R + + + +T++G+ V + S +F Sbjct: 176 VADGVIILRYVRPDQLRDVKLAVEVVKMRRHKHSRSIKPYEITDEGI-AVHSESEVF 231 >UniRef50_O27166 Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27166_METTH Length = 470 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 26/224 (11%) Query: 57 SAGVAKVQKLSDISLE---ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 + A + ++ ISL+ STG D +LGGGV GSA+L+ G GAGK++LL Sbjct: 223 TRRGASIFPITSISLDYSVSRELVSTGIPTLDEMLGGGVYRGSAVLVSGTTGAGKTSLLS 282 Query: 114 QTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPT-----DNLNMLS--------ETSI 159 + + + + L+ + EE Q+ +G+ D L + S E + Sbjct: 283 KFAYESCRRGERCLFFSNEEPADQIVRNMESIGIKLGEFLGDKLLIHSDRPTSLGLEAHL 342 Query: 160 EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQ-VRETAAYLTRFAKTRGVAIVMV 218 + + + P +++D + + A SP + + + LT F K RG+ + Sbjct: 343 TYMQDLIMDFNPDSVLVDPVTGL--AGAGGSPETRNENAKHLFIRLTDFLKGRGITSIFS 400 Query: 219 GHVTKDGSLAGPKV-LEHCIDCSVLLD-----GDADSRFRTLRS 256 + + ++ L ID ++L+ G+ R L+S Sbjct: 401 YLIASPFTATTTELKLSSLIDTWIVLESIRANGEYRRSLRILKS 444 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 94/263 (35%), Gaps = 48/263 (18%) Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTL 126 + E + + TG K D + GG G LI G PG GK+ + ++ L K A + Sbjct: 1 MDFENIEKAPTGIKGLDMITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGV 60 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQ--------------------ICLIA 166 V+ +E+++ + + L IE + Sbjct: 61 MVSFDEAMENLIENFRSSDRLLERLIDEGLLFIEDASRGMDPDAGSYSLEALKLRLEDAI 120 Query: 167 EEEQPKLMVIDSIQVMHM-ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 + +V+D + + + Q G +RE L R+ GV V G Sbjct: 121 RRTGARRVVLDKVDNLFDGTERQGMIGFE--LRE----LIRWLNGMGVTSVFT-----SG 169 Query: 226 SLAGP---KVLEHCIDCSVL----LDGDADSRFRTLRSHKNR--FGAVNELGVFAMTEQG 276 G ++ E+ DC + +G + R LR K R +N F +T +G Sbjct: 170 DYGGSPTHRLEEYISDCVIHLTHTFEGQVGT--RHLRIVKYRGSGHGLNRYP-FIITRRG 226 Query: 277 --LREVSNPSAIFLSRGDEVTSG 297 + +++ S + + V++G Sbjct: 227 ASIFPITSISLDYSVSRELVSTG 249 >UniRef50_C1AB48 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB48_GEMAT Length = 813 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 153/451 (33%), Gaps = 75/451 (16%) Query: 71 LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG 130 E R RV G GS + + G PG GK++L L ++ + + G Sbjct: 326 EEVKERILDHIAVLGRV---GTQQGSILCLVGPPGVGKTSLGRSIAKALGRRFVRMALGG 382 Query: 131 EESLQQVA--------------MRAHRLGLPTDNLNMLSETS-------IEQICLIAEEE 169 ++ ++A R + + +L E + + E Sbjct: 383 VRDEAEIRGHRRTYIGSMPGRILQAMRRAESMNPVILLDEIDKLGSDWRGDPAAALLEVL 442 Query: 170 QPKL----------MVIDSIQVMHMADVQSSPGSVAQVR--------------ETAAYLT 205 P+ + D QV+ + S G +R E A Sbjct: 443 DPEQNKAFNDHYLEVDYDLSQVLFVTTANSLSGIPEALRDRMEIIRLPGYLEGEKLAIAR 502 Query: 206 RFA--KTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLR---SHKNR 260 R+ K G V V VT VL I G D R R R Sbjct: 503 RYLVPKQLGANGVPVAQVT-----LADDVLPAMIRGWTRESGVRDLERRIARLSRKLARR 557 Query: 261 FGAVNELGVFAMTEQGLREVSNPSAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVD 319 A + + L + P E G + + + T L+EI+ V Sbjct: 558 SWADHTQ--VTVVRDELPALLGPIQHLDDEHALEDQVGVASGLAYTSTGGELLEIEVSVV 615 Query: 320 HSMMANPRRVAVG--LEQNRLAILLAVLHRHGGLQMA-----DQDVFVNVVGGVKVTE-T 371 +G ++++ A L V R L ++ ++D+ V++ G + Sbjct: 616 PGRGRVQLTGTLGDVIKESAAAALSYVRARASALGLSPDFYRERDIHVHLPAGATPKDGP 675 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA +AL A+ S+L P+ D+ + GEV L G + P+ +E+ A +H + I+P Sbjct: 676 SAGIALATALTSALTGIPVRGDIAMTGEVTLRGRVLPIGGVREKGVAAHRHRLKHVIIPQ 735 Query: 432 AN------VPKKAPEGMQIFGVKKLSDALSV 456 N +P+ G++ VK + + L + Sbjct: 736 GNAKDLSELPEDVRNGVEWHIVKTMDEVLEL 766 >UniRef50_C6HYB7 ATP-dependent protease La n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYB7_9BACT Length = 825 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 18/141 (12%) Query: 328 RVAVGLEQNRLAILLAVLHRHGGLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVS 383 R A+ Q+R + G+ + ++ ++V GG + SA + + A++S Sbjct: 670 RTALSFAQSR--------SKTLGIPPEFFSKNEIHIHVPGGAIPKDGPSAGITMTTAILS 721 Query: 384 SLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKK 437 P+P + + GE+ L+G + PV +E++ A + G +PA N +P + Sbjct: 722 LATGIPVPSTVAMTGEISLSGRVLPVGGIKEKLIGAREAGITTIYLPAKNLKDTVELPDE 781 Query: 438 APEGMQIFGVKKLSDALSVFD 458 + I V+ + + + VF Sbjct: 782 VKRDLAIHPVETMDELIRVFF 802 >UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q6C269_YARLI Length = 421 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 54/251 (21%) Query: 20 RWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLS---------DIS 70 +++ Q A + T L A P RL G G V K +L+ IS Sbjct: 19 KYEDQFEAFVKYQVSTCDLLTADP------RLVGAWGEQKVLKCHQLATDLESRLSEHIS 72 Query: 71 LEE------------LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +E L STG ++ D V+ GG G+ + G AGKS LLQ Sbjct: 73 MERVDFDVDSERERPLDAISTGVRKIDTVMNGGFPTGTLCEVAGESAAGKSHFLLQLCVN 132 Query: 119 --LAQQM-----KTLYVTGE---ESLQQVAMRAHRLGLPTDNLNM-----LSETSIEQ-- 161 LA+ K ++++ E E+ + V M H + L DN+++ ++ +EQ Sbjct: 133 VQLARGEGGLGKKAVFISTESGLETRRLVQMMDHVIKLGHDNISLHHVSFIACKDLEQQD 192 Query: 162 ------ICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVA----QVRETAAYLTRFAKTR 211 + + E+ L+VIDS+ + ++ +S G + ++ T +L A+ Sbjct: 193 RVFQYNLPNLLEDSSYGLVVIDSLAAHYRSEELTSKGDFSSRDKRLLRTLHHLKGLARKH 252 Query: 212 GVAIVMVGHVT 222 VA+V ++ Sbjct: 253 NVAVVFANQIS 263 >UniRef50_B6YV41 ATPase n=7 Tax=Thermococcaceae RepID=B6YV41_THEON Length = 249 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 44/253 (17%) Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ--QMKTL 126 ++ + R +G FD ++ GG G+ +L+ G G+GK+T +Q + K A+ + Sbjct: 2 VTKYTIKRVKSGIPGFDDLIEGGFPVGTTVLVTGPTGSGKTTFGVQFVYKGAELYNEPGV 61 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNL----------------------------NMLSETS 158 VT EE Q + G + N+ +E Sbjct: 62 IVTLEERAQDLRREMRAFGWDLERYERERKIAIVDGVSAVVGLPSEEQYVLEGNLNAEDF 121 Query: 159 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 + I + + K +VIDSI + +++RE L GV ++ Sbjct: 122 LRYIYRVVKSINAKRLVIDSI-----PSIAFRLKEESRIREVLLQLNTILLEMGVTSILT 176 Query: 219 GHV--TKDGSLAGPKVLEHCIDCSVLLD--GDADSRFRTLRSHKNR--FGAVNELGVFAM 272 G ++ + E+ +LLD R L K R ++ + F + Sbjct: 177 TEAPDPSRGRISRYGMEEYIARGVILLDFVEKEVELKRYLLIRKMRETKHSMKKYP-FEI 235 Query: 273 TEQGLREVSNPSA 285 E+G+ V PS Sbjct: 236 NEEGI--VVYPSG 246 >UniRef50_A9B3R2 ATP-dependent protease La n=8 Tax=Bacteria RepID=A9B3R2_HERA2 Length = 815 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 350 GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 G + D+ ++V GGV SA + L +++S+L RPL +D+ + GE+ L G + P Sbjct: 665 GKRFEKIDIHIHVPEGGVPKDGPSAGITLACSVISALTHRPLRRDVAMTGEITLRGRVLP 724 Query: 409 VPSGQERISEAAKHGFRRAIVPAANV------PKKAPEGMQIFGVKKLSDALSV 456 + +++I A + G ++P N+ P + + V+ + + L + Sbjct: 725 IGGLRDKILGAYRAGITTMLIPKKNLRDLEEVPNNVRRQITVVAVEHMDEVLPI 778 >UniRef50_D0LT56 Putative circadian clock protein, KaiC n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT56_HALO1 Length = 474 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 17/231 (7%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL-LLQTLCKLAQQMKTLYV 128 ++ + RFS G K D + GGG + S +L+ G G+GK+ L + A+ + Y Sbjct: 245 DVQRMERFSCGTKGLDEMTGGGWLRDSIVLVRGPTGSGKTILSGMYACAGAARDERVFYY 304 Query: 129 TGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-------V 181 EE+ + LGLP + E I I E P+ M+I+ Sbjct: 305 GFEETESMLLRNYQALGLPVK--KYVDEGKIRLIARFPEATSPEDMIIELRSVLDQHKPT 362 Query: 182 MHMADVQSSPGSVAQV---RETAAYLTRFAKTRGVAIVMVGHVTKDGSL-AGPKVLEHCI 237 + + D S+ V R+ +T + G + ++ + S+ + L Sbjct: 363 LIVIDSISAIEHVTSYDSFRQFIVGITSALRHHGRSALLTQSAAIELSIDSQAPYLSTLA 422 Query: 238 DCSVLLDGD--ADSRFRTLRSHKNRFGA-VNELGVFAMTEQGLREVSNPSA 285 D ++L D D R + K R A + + GL+ S+P Sbjct: 423 DAILMLGYDIRKDGLERHAQVLKMRGSAHSSAARALTIGRGGLQVASDPHE 473 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 37/198 (18%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGLPTDNL 151 G A L+ G G GK+ + LQ C LA++ + ++ T EE+ + + LG D+ Sbjct: 22 PRGRATLLAGRSGTGKTMMSLQIACNLARRGVRCVFATIEENPRDLLRAGDELGF--DSS 79 Query: 152 NMLSETSIEQICLIAE--------------------------EEQPKLMVIDSIQVMHMA 185 + +E I + + E+ +++++DSI + Sbjct: 80 RLANEGDCLHIVDLVQVPSAPVLVSGDFDLSGLASRLVFEAHEQNAEIIILDSITALLSP 139 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD-GSLAGPKVLEHCIDCSVLLD 244 +R L A G + ++ D G + + ++ D V+L Sbjct: 140 -----VEKPRALRHLFFQLCVAALEDGRSFLVTAEADVDYGPITRLGMEDYVCDAVVILR 194 Query: 245 G--DADSRFRTLRSHKNR 260 D R R++ HK R Sbjct: 195 NVVDGKRRRRSVEVHKYR 212 >UniRef50_A2BKH9 Putative RecA ATPase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BKH9_HYPBU Length = 478 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 27/236 (11%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC-KLAQQMKTLYV 128 + F G + D++L G + PG+ +LI GNPGAGK+ L + + LYV Sbjct: 6 KASDPNSFVWGVRALDKMLVGSLRPGTTVLIAGNPGAGKTILAASICYVNAFRGVPCLYV 65 Query: 129 TGEESLQQVAMRAHRLGLPTDNLNMLSETS----------------IEQICLIAEEEQPK 172 + +ES ++ RLG+ L +E I + Sbjct: 66 SLQESREKFLWYMARLGMNFSELEEKGLFEYRDVPLIVDRAAVGHVLEDIISAVTSHGHR 125 Query: 173 LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT-RFAKTRGVAIVMVGHVTKDGSLAGPK 231 ++VIDS + + G + RE A+ +V+V V Sbjct: 126 VIVIDSFTPIGL-----LVGGTVEAREVLQNFFYNLARLTKGLVVIVAEVPYGSEKIELG 180 Query: 232 VLEHCIDCSVLLDGDADSRF--RTLRSHKNRFGA--VNELGVFAMTEQGLREVSNP 283 +E D ++L ++ F R + K R E+ + +GL P Sbjct: 181 GIEFVADIVIMLKQKVENGFITRLMEVRKIRGAPITTAEIPFTIVEGKGLVACPPP 236 >UniRef50_Q1IWD7 ATP-dependent protease La n=9 Tax=Deinococci RepID=Q1IWD7_DEIGD Length = 813 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 355 DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 D+ V+ G SA + + A++S++ RP+ D+ + GE+ L G + P+ + Sbjct: 679 KLDLHVHFPDGATPKDGPSAGITIATAVISAVTGRPVRLDVAMTGEISLRGRVLPIGGVK 738 Query: 414 ERISEAAKHGFRRAIVPAANVP--KKAPEGM----QIFGVKKLSDALSVF 457 E++ A + G R I+P N P ++ PE + +I V+++ + L + Sbjct: 739 EKLLAAHQGGIREVIIPKDNEPNLQEVPESIRGELRIHAVERVDEVLDLV 788 >UniRef50_B4UAX6 ATP-dependent protease La n=18 Tax=Bacteria RepID=B4UAX6_ANASK Length = 819 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 12/133 (9%) Query: 329 VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRD 387 A+ ++R +L L + + + D+ V+V G + SA + + +VS+L Sbjct: 660 AAMSYVRSRAELLG--LDKRF---LENVDIHVHVPEGAIPKDGPSAGITMATTLVSALCR 714 Query: 388 RPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEG 441 P+ +D+ + GE+ L G + P+ +E++ A + G ++ ++P N +P++ E Sbjct: 715 IPVRKDVAMTGEITLRGRVLPIGGLKEKVLAAHRGGIKKVLIPKENQKDIREIPRRVREK 774 Query: 442 MQIFGVKKLSDAL 454 +QI V + L Sbjct: 775 LQIVPVDHADEVL 787 >UniRef50_B8GX12 ATP-dependent protease La n=79 Tax=cellular organisms RepID=LON_CAUCN Length = 799 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 353 MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 DV ++V G SA +A+ LAMVS L P+ +D+ + GE+ L G + + Sbjct: 654 FEKTDVHIHVPDGATPKDGPSAGIAMALAMVSVLTGIPIRKDIAMTGEITLRGRVTAIGG 713 Query: 412 GQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 +E++ A + G + ++P N VP+ +G++I V + + L Sbjct: 714 LKEKLLAALRSGVKTVLIPQENEKDLADVPQTVKDGLEIIPVSTVDEVLK 763 >UniRef50_Q0W872 Predicted RecA-family ATPase n=2 Tax=Euryarchaeota RepID=Q0W872_UNCMA Length = 241 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 30/232 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGEE 132 + R STG E D+ + GG G ++L+ G PG+GK+ + + + + Q K +Y+ EE Sbjct: 1 MERVSTGIDELDQFISGGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKCVYIATEE 60 Query: 133 SLQQVAMRAHRLGLPTDNLNMLSETSI-----EQICLIAEEEQPKLMVIDSIQVMHMADV 187 L+ + +A +G + I E+ + IDS+Q ++ V Sbjct: 61 ELEDILHQAESIGRDIRPFYESGQLKIIKLYEERAYTTIQTMSLGFEKIDSLQSDIISLV 120 Query: 188 QSSPG-----------------SVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGP 230 + PG S+ + R+ L + + + T + G Sbjct: 121 EKIPGETDLVVIDNLGVFTLNMSMDEFRKQLDTLNLLLGKQHYTSLYIMDDTSNRRTEG- 179 Query: 231 KVLEHCIDCSVLLDGDA----DSRFRTLRSHKNRFGAVN-ELGVFAMTEQGL 277 V + + L + R R L K R ++ E F +T +G+ Sbjct: 180 -VASYSAYGVIRLSIKENPYTNLRERHLEISKMRATSIPLESYAFNITSEGI 230 >UniRef50_D2RE70 Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RE70_ARCPR Length = 444 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 29/240 (12%) Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLA 120 +V +L + R +TG + D + GG GS +I G G GK+T L + Sbjct: 215 EVPELERTEVVTRERVTTGIAKLDVLTDGGFYKGSITVIAGQTGTGKTTFGLHFVYTNAL 274 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPT----DNLNML-----SETSIE---QICLIAEE 168 + + ++VT EES+ + + G+ D LN++ SE+ + ++ I E Sbjct: 275 RGHRAVFVTLEESVGDILRSMNNYGMKYESVKDRLNIISIVPESESPVSIFVKLKEIIEN 334 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 E+P +VIDS + ++ + YL K +A ++ + +G + Sbjct: 335 EKPVALVIDSYTALEEH------MDRVELSKMVRYLQLAVKNNQIATILT--MNMEGGIE 386 Query: 229 --GPKVLEHCIDCSVLLDGDADSRFRTLRS---HKNRFGAVNE-LGVFAMTEQGLREVSN 282 P L D +LL D + R ++ K+R + F +T +G E+S+ Sbjct: 387 CLPPTGLSTLADNIILLGYDFEDG-RMVKKMLILKSRASNHARKIYKFDITSKG-VEISD 444 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 26/235 (11%) Query: 84 FDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGEESLQQVAMRAH 142 R++ GG GS ILI G PG GK+TL+ ++ + K L+V+ E + Sbjct: 8 LTRIIPGGFPRGSMILIAGEPGTGKTTLVSAIAINEIKKGKKVLFVSLNEPKEDYFGTIE 67 Query: 143 RLGLPTDNLNM-----------LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSP 191 G D E ++ I +P L+VIDSI + +S Sbjct: 68 GFGWEIDESKFKFVDLFTVGREALEAQLKLITEEIFNFKPDLIVIDSITAL------TSL 121 Query: 192 GSVAQVRETAAY-LTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSR 250 S VR L K+ G ++V G V E +D ++L Sbjct: 122 MSPDAVRSFLHASLGTLVKSIGAVALLVAEKPMGKEELGFGVEEFVVDGVIILRYIKYGE 181 Query: 251 F--RTLRSHKNRFGAVNELGVFA--MTEQGLR--EVSNPSAIFLSRGDEVTSGSS 299 R + K R + E + +T++G+ EV + + VT+G + Sbjct: 182 HYRRVMEIPKMRRRKI-EKPQYEYAITDKGIELFEVPELERTEVVTRERVTTGIA 235 >UniRef50_C4FZN4 ATP-dependent protease La n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZN4_ABIDE Length = 801 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 76/424 (17%), Positives = 151/424 (35%), Gaps = 71/424 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG--EES-------------LQQVA 138 GS IL G PG GK+++ L ++ + + G +E+ ++ Sbjct: 337 AGSIILFTGAPGTGKTSMGKAIAEALGRKYIRISLGGIKDEAEVRGHRRTYIGAMPGRIM 396 Query: 139 MRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQV 197 R G+ + + + + E L V+D Q + D + P +++V Sbjct: 397 ESIKRSGVNNPVIVLDEIDKLGYGSFNGDPESALLEVLDPEQNVTFTDHYMNVPYDLSKV 456 Query: 198 -RETAA----YLTRFAKTRGVAIVMVG-------HVTKDGSLAGPKVLEH---------C 236 A ++ R I + G H+ K+ +A K LE Sbjct: 457 LFICTANNIDEMSDPLLDRMEIIELSGYTAEEKFHIAKEHLMA--KSLEEAGLLKKNIGI 514 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREV-----------SNPSA 285 D + + +R K + + + E+ + +V N A Sbjct: 515 SDAVLKNIIANYTMEAGVRGLKKQIDKLMRQAAVKILEKEIEKVVIKKEDLPKLLGNKKA 574 Query: 286 IFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGL--EQNRLAIL 341 + G + W G L +E AL + V G + + + Sbjct: 575 LHDKVLKHNIPGVVTGLAWTQAGGEILFIETTAL-----SGTGQIVITGQLGDVMKESAT 629 Query: 342 LAV-LHRHG----GLQMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLV 395 +AV L + + D+D+ ++V G V SA + + A+ S + + +L Sbjct: 630 IAVNLAKSLLFDKKIDFRDKDIHIHVPSGSVPKDGPSAGITMFTAITSLVLGIKVNPELA 689 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKK 449 + GE+ L G++ P+ E++ A + G ++ ++P N VP+ + ++I V Sbjct: 690 MTGEISLRGQVLPIGGLPEKLMAAERAGIKKVLIPLTNKEDLIDVPESTKKSLEIVLVDT 749 Query: 450 LSDA 453 ++D Sbjct: 750 VTDV 753 >UniRef50_B1C8C1 ATP-dependent protease La n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8C1_9FIRM Length = 770 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 355 DQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 +D+ ++V G + SA + L A++S+L +P+D+ + GE+ L+G++ P+ + Sbjct: 657 KKDIHIHVPEGATPKDGPSAGITLATAIISALTKMSVPEDIAMTGEITLSGDVLPIGGLR 716 Query: 414 ERISEAAKHGFRRAIVPAANV------PKKAPEGMQIFGVKKLSDALSVFDD 459 E++ A++ ++ ++P N+ P + ++I VK + D + Sbjct: 717 EKLLAASRARVKKVLIPKENIKDLEEVPDDIKDTLEIVPVKHMMDVYKIIFK 768 >UniRef50_D2M297 Putative circadian clock protein, KaiC n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M297_BACS4 Length = 513 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 34/224 (15%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQ 135 +TG D +L GG+ G+ I++ G PG GK+T+ +Q L A LY++ +E Sbjct: 49 VTTGINGLDSLLNGGIPKGNGIIVEGAPGTGKTTMGIQFLYHGALNGENGLYLSFQEFPD 108 Query: 136 QVAMRAHRLGLPTDNLN---------MLSETSIEQIC-------LIAEEEQPKLMVIDSI 179 Q+ G L + E +E++ + EE K +VIDS+ Sbjct: 109 QIYSDMSNFGFNIKELEKQKLLKIVLLSPEVLLEEMFIPSGLFEELVEEYGCKRIVIDSL 168 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGH-VTKDGSLAGPKVLEH-CI 237 + + V ++R+ + +++ T + L EH Sbjct: 169 SIFKHLE-----EDVHKLRKLIYSFKNILGKYRLTSLIISERYTNNQELP----FEHFIF 219 Query: 238 DCSVLL---DGDADSRFRTLRSHKNRFGAVNELGV--FAMTEQG 276 D + L + + + RTL K R G E G + +T++G Sbjct: 220 DGLIQLNYREKFDEYKERTLEILKMR-GTKIEEGEHTYRLTDEG 262 >UniRef50_Q65GJ6 ATP-dependent protease La n=16 Tax=Bacteria RepID=Q65GJ6_BACLD Length = 774 Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query: 355 DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 D+ ++V G V SA + + A+VS+L RP+ +++ + GE+ L G + P+ + Sbjct: 659 KHDIHIHVPEGAVPKDGPSAGITMATALVSALTGRPVSRNVGMTGEITLRGRVLPIGGLK 718 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 E+ A + G + I+P N +P EG+ V L + L Sbjct: 719 EKALGAHRAGLKTVIMPKDNEKDIEDIPNSVREGLTFIPVAHLDEVLK 766 >UniRef50_P43864 ATP-dependent protease La n=107 Tax=Bacteria RepID=LON_HAEIN Length = 803 Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 355 DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 +D+ ++V G SA +A+ A++S L P+ D+ + GE+ L G++ P+ + Sbjct: 661 KRDIHIHVPDGATPKDGPSAGIAMCTALISCLTGNPVRADVAMTGEISLRGKVLPIGGLK 720 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 E++ A + G + ++P N +P+ + + I V+ + + L Sbjct: 721 EKLLAAHRGGIKTVLIPKENVKDLEEIPENVKQNLAIHAVETIDEVLGF 769 >UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Tax=Archaea RepID=RADB_METBU Length = 225 Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 20/213 (9%) Query: 84 FDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGE----ESLQQVA 138 D +LGGG G I G G+GK+ + LQ + + + K +++ E + +Q+A Sbjct: 15 LDELLGGGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEGLSADRFKQIA 74 Query: 139 MRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPK-----LMVIDSIQVMHMADVQSSPGS 193 R + D + + EQ + E E+ ++++DS + ++ S Sbjct: 75 GENAR-KIAQDIIIFEPHSFEEQYSAVRETEKISTENVGVIIVDSATAYYRFELDDEDSS 133 Query: 194 VAQVRETAAY---LTRFAKTRGVAIVMVGHVTKDGSL-----AGPKVLEHCIDCSVLLDG 245 + RE + L A+ R + +V+ V D G LEH + L+ Sbjct: 134 IRTRRELSNQIGFLHSLARKRDIVVVITNQVYSDIKSNSLKPIGGSSLEHISKTIIQLEK 193 Query: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 R + K+R F +T G+R Sbjct: 194 TGTGSRR-AKIWKHRSRPEGTTCEFTITADGVR 225 >UniRef50_A6XWS5 ATP-dependent protease La n=4 Tax=Bacteria RepID=A6XWS5_VIBCH Length = 170 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 355 DQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 +D+ V+V G + SA +A+ A+VSSL P+ ++ + GE+ L GE+ P+ + Sbjct: 44 KKDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLK 103 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 E++ A + G + ++P N +P +Q+ V+ + + L V Sbjct: 104 EKLLAAHRGGIKTVLIPKDNERDLEEIPDNVIADLQVLPVQWIDEVLKV 152 >UniRef50_C3XNB5 ATP-dependent protease La n=4 Tax=Campylobacterales RepID=C3XNB5_9HELI Length = 819 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 8/111 (7%) Query: 355 DQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 D+ +++ G + SA +A+ A+ S L +R + D+ + GE+ L G++ P+ Q Sbjct: 707 RFDIHLHIPEGATPKDGPSAGIAIASALSSLLTNRKVRGDVAMTGELTLRGKVLPIGGLQ 766 Query: 414 ERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQIFGVKKLSDALSVF 457 E++ A K G + ++P N +P++ G++I V + L++ Sbjct: 767 EKLIAAYKSGMQEVLIPKKNFERDLEEIPQEVKNGLKIRPVSDFKEVLAII 817 >UniRef50_Q08YR0 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08YR0_STIAU Length = 429 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 24/223 (10%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R +TG K D +L GGV GS+ LI G G+GK+TL LQ + + L + LYV +E+ Sbjct: 213 RLATGVKGLDTMLQGGVWAGSSTLIEGRTGSGKTTLALQFILEGLKRGEPGLYVNFQENP 272 Query: 135 QQVAMRAHRLGLPTDN-----LNMLSETSIE--------QICLIAEEEQPKLMVIDSIQV 181 Q+A LG L++L + +E ++ I EE+ K + +D++ Sbjct: 273 TQLARIIQSLGWDVAEAQRMGLHLLYHSPVELQIDSILVKLFRIIEEKHIKRVAVDAV-- 330 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 D+ S+ + ++ L + V+ V+ T + + D + Sbjct: 331 ---GDLISAASDLQRLFGYLYALAQHFSVMRVSSVLTLETTGLTTNPLEGQISALSDAIL 387 Query: 242 LLDGDA--DSRFRTLRSHKNRFGAVNELGV--FAMTEQGLREV 280 L + + RTL+ K R G ++L V +T +G V Sbjct: 388 SLQVERPQNRSMRTLQVVKAR-GTDHDLNVRELRITSKGAEVV 429 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 67/199 (33%), Gaps = 29/199 (14%) Query: 102 GNPGAGKSTLL--LQTLCKLAQQMKTLYVTG-EESLQQVAMRAHRLGLPTDNLNMLSETS 158 G PG+GK+ L L Q LY+T E L++V + G + Sbjct: 2 GEPGSGKTILAERLIFANAEVGQRPILYLTTLSEPLEKVVRYLQQFGFYDEEKLTSGAIV 61 Query: 159 IEQICLIAEEE----------------QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAA 202 E I EE+ P ++VIDS + +H D+ + SV +R Sbjct: 62 YESIAQELEEQGIAAVVPKLKEIIKTLSPSIIVIDSFKAVH--DLST---SVPDMRRMLY 116 Query: 203 YLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRF--RTLRSHKNR 260 ++ VG ++ P+ D V L R LR K R Sbjct: 117 EVSGLLTAYETTAFFVGEYSEAQISIYPEFA--VADGMVELARKKQGTRDERYLRVLKLR 174 Query: 261 FGAVNE-LGVFAMTEQGLR 278 E L F +T GL Sbjct: 175 GSNYLEGLHAFRITSDGLE 193 >UniRef50_C7GBX2 Mg chelatase-like protein n=3 Tax=Clostridiales RepID=C7GBX2_9FIRM Length = 490 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 65/117 (55%), Gaps = 4/117 (3%) Query: 347 RHGGLQMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLR--DRPLPQDLVVFGEVGLA 403 ++ G + + + +N ++ + + DL + +A++++ + + ++ V GEVGL Sbjct: 34 KNCGFALPPKHITINFTPANIRKSGSGFDLPVAVAVLTAFGYIRQEMVREYFVAGEVGLN 93 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVFDD 459 G+++PV ++EA + G ++ +VP N + A MQ+F VK L+DA+++ + Sbjct: 94 GKVQPVNGILPMVAEAKERGMKKCMVPWKNAGEAALVSDMQVFAVKNLADAVNILNG 150 >UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DA89_9PROT Length = 774 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 354 ADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 +V ++V G + SA + + A+ S ++ + D+ + GE+ L+G++ P+ Sbjct: 660 YKYNVHIHVPEGAIPKDGPSAGITMATAIASIFSEKKVHSDVAMTGEITLSGDVLPIGGL 719 Query: 413 QERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQIFGVKKLSDALS 455 +E++ A K ++ ++P N VP + EG++I VK++ + L Sbjct: 720 KEKLIAAYKAKIKKVLIPQKNYEKDLDDVPNEVKEGLEIVPVKRIEEVLD 769 >UniRef50_C9XRQ1 ATP-dependent protease La n=12 Tax=Clostridiales RepID=C9XRQ1_CLODC Length = 789 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 356 QDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D+ +++ G V SA + + LA++S+L RP+P ++ + GE+ L G + V +E Sbjct: 671 NDIHIHIPEGAVPKDGPSAGITMALAVISALTKRPVPGNIAMTGEITLRGRVLAVGGVKE 730 Query: 415 RISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 ++ A + G + ++P +P+ E M+ V+ + + L Sbjct: 731 KLLAAHRAGITKVLIPKECEADLDEIPENVKEKMEFVLVEHMDEVLE 777 >UniRef50_C5A2Z8 RecA family AAA ATPase n=7 Tax=Thermococcaceae RepID=C5A2Z8_THEGJ Length = 236 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 37/232 (15%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEE 132 R STG D ++ GG++PG LI G PG+GK+T+ + L + A++ K YV+ + Sbjct: 5 QDRISTGIPGLDELIEGGLIPGKVYLITGPPGSGKTTMGMHFLIEGARKNEKVAYVSLIQ 64 Query: 133 SLQQVAMRAHRLG------LPTDNLNMLSETS---------------IEQICLIAEEEQP 171 + R T L + + +I IAE+E+ Sbjct: 65 DPHEAVKDMMRFDPSVQVYAGTKRLLLFDLGPVLWRESAHVPTWRSVLLRIREIAEDEKI 124 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 +VID + + + S + A+ + A R + GV ++ +T Sbjct: 125 SRLVIDPLTAI-----EFSMENPAEKKAELARFVRGLEDLGVTTYLIAEMTD----LNRY 175 Query: 232 VLEH-CIDCSV--LLDGDADSRFRTLRSHKNRFGAVNELGVFAM--TEQGLR 278 EH + + R ++ K R +E G+F M T++GL Sbjct: 176 TEEHYLVSGVIMLHYFLLEKKMVRAIQILKMR-RTKHETGLFRMEFTQRGLV 226 >UniRef50_Q2SRX5 ATP-dependent protease La n=4 Tax=Mollicutes RepID=Q2SRX5_MYCCT Length = 779 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 352 QMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVP 410 + D D+ ++V G V SA + L A++S+L +P+ +D + GE+ L G + P+ Sbjct: 661 KFDDIDIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIG 720 Query: 411 SGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFDD 459 +E+ AA+ G + ++P+ N +P++ + ++I V K D + + Sbjct: 721 GLREKSISAARSGLKHILIPSKNVKDIEDIPQEVQDVLKITPVSKYEDVYEIIFN 775 >UniRef50_UPI00016C08DB Endopeptidase La n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C08DB Length = 548 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 312 VEIQALVDHSMMANPRRVA--VGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVT 369 ++I +V+ + + ++ L +L + + + D + + Sbjct: 383 IKISGIVEEEEIQKSNSSVKRTSMAKSSLDTVLTIFKTMFDIPIEDYYIHLTFPNSTPTD 442 Query: 370 ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIV 429 +SA +A+ + S L +P+ ++V GE+ + GE+ PV +I A G ++ + Sbjct: 443 GSSAGIAIFCVIYSVLFKKPINSNIVFTGELTIYGEVYPVGGVSNKIQAAIDAGAKKIFI 502 Query: 430 PAANVPKKAPE-GMQIFGVKKLSDALSVFDDL 460 P N+ + + I+ V + + + + Sbjct: 503 PEENISTLYNDYDIDIYPVNNIQEIIEEIFSM 534 >UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprotei RepID=Q977U1_SULAC Length = 198 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 32/203 (15%) Query: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESL 134 R STG EFD+++ GG+ G + + G PG GK+ L + + L + +YVT EES Sbjct: 3 RLSTGIYEFDKLIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESR 62 Query: 135 QQVAMRAHRLGLPTDN----------------------LNMLSETSIEQICLIAEE--EQ 170 + +A + G + + +E I ++ L ++ Sbjct: 63 DSIVKQAKQFGWDFEEHLDKKLIIIDALMKEKDDEWSLTELTAEELINKVILAKQKLGHG 122 Query: 171 PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGP 230 +VIDS+ + + A R+ + YL R I S Sbjct: 123 YARLVIDSVSALFLDK-------PALARKISYYLKRVLNKWKFTIYATSQYAITTSQPLD 175 Query: 231 KVLEHCIDCSVLLDGDADSRFRT 253 V EH D + T Sbjct: 176 LVSEHVADGIIRFRRSVKDGMAT 198 >UniRef50_B3PN08 Heat shock ATP-dependent protease n=2 Tax=Mycoplasma RepID=B3PN08_MYCA5 Length = 835 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 75/432 (17%), Positives = 152/432 (35%), Gaps = 77/432 (17%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG--EES-------------LQQVAMRA 141 LI G PG GK+TL L +Q + + G +ES ++ Sbjct: 408 LTLI-GPPGTGKTTLAKSIAEALGRQFVKISLGGVKDESEIRGHRRTYVGALPGKIISGI 466 Query: 142 HRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD--------------- 186 + G+ ++ + +L E + L V+D Q + D Sbjct: 467 KKAGV-SNPVILLDEIDKMSSDFRGDPLSALLEVLDPEQNTNFQDHYLDLEYDLSKVLFI 525 Query: 187 -----VQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVM-VGHVTKDGSLAGPKV 232 S P + R L TR A+T ++ ++ + +T+ +V Sbjct: 526 ATANSFDSIPAPLYD-RVEFLELSTYTLIEKTRIARTHLLSKILSLNALTEKQYQITDEV 584 Query: 233 LEHCIDCSVLLDGDADSRFRTL----RSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL 288 L + I G + + R L R R F + + +RE P ++ Sbjct: 585 LAYIIKNYTRESGVRNLQ-RLLDSIARKIVVRILDKKVDKEFVIDKAIVREFLGP-ELYN 642 Query: 289 SRGDEVTSGSSVMVVWE----GTRPLLVEIQALVDHSMMANPRRVAVG----LEQNRLAI 340 +GDE + V+ G + +E+ + A G + + I Sbjct: 643 EKGDETQPKAGVVNALAYTAYGGTSMTIEVTTFPTTAKGAL---NLTGQLKDVMRESATI 699 Query: 341 LLAVLHRHG------GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQD 393 LA + + + + ++V G ++ SA + A++S+L + +P Sbjct: 700 SLAYVRSNAEKFGIKDFDFENTSIHIHVPEGAIQKDGPSAGVTFTTAIISALSKKAVPNT 759 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGV 447 + + GE+ L G++ P+ +E+ A++ G + +P N VP++ + ++ V Sbjct: 760 IAMTGEITLRGKVLPIGGLKEKSLAASQIGIKTIFIPKDNEKNLIDVPEEVKKDIKFVPV 819 Query: 448 KKLSDALSVFDD 459 + + + Sbjct: 820 EYYDEIFKYIFE 831 >UniRef50_Q1CWG1 Putative uncharacterized protein n=2 Tax=Cystobacterineae RepID=Q1CWG1_MYXXD Length = 514 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 31/242 (12%) Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 +L + R + G D +L GG+V S+ L+ G PG GK+ L L L + A +Q Sbjct: 237 TRLPTRTPSTDARLTFGIPALDEMLSGGLVRDSSTLVAGPPGCGKTQLGLHFLAEGARRQ 296 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDN----------LNMLSETS----IEQICLIAEE 168 LY+ E ++ +A RLGL + +ET E++ ++ Sbjct: 297 EPGLYLGFVEPPARLVHKAERLGLELGAHVEAGRVHLVSRVAAETQPDALAEELFGWVKQ 356 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 + +V+D ++ ++ S + + L GV +++ +LA Sbjct: 357 HGIQRLVLDGLES-FCQELTDSERTPQFLAALMHELLNL----GVTPLVLQQ---TRALA 408 Query: 229 GPKV-----LEHCIDCSVLLD--GDADSRFRTLRSHKNRFGAVNE-LGVFAMTEQGLREV 280 P+ +E +D ++L +R L K R + +F+MT +G+ Sbjct: 409 TPEADARPDVEALVDNVLVLRMVALRSRNYRVLSVLKARESDHDTAQRLFSMTPRGIEVA 468 Query: 281 SN 282 ++ Sbjct: 469 AD 470 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 35/235 (14%) Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKT 125 S+ E R +G D +L GG + G +I G PG GK+ L Q +AQ + Sbjct: 5 SERPDEPDARVPSGVPGLDALLRGGFLRGGTYIITGAPGTGKTILGNQFCFATVAQGGRA 64 Query: 126 LYVT-GEESLQQVAMRAHRLGLPTDNLNMLSETSIE----------------QICLIAEE 168 +Y+T ES ++ + + + S E I E Sbjct: 65 IYLTVLGESHARMMLHLRSMRFFHAE-EVGRALSYESGSAALKAEGLAGLSKLIFRAVRE 123 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 ++V+D + M RE L G +++ G Sbjct: 124 HGATVLVVDGLVAMEERS-----EDPLSFREFLHGLCVHNALAGCTTLLLT-----GQRG 173 Query: 229 GPKVLEH-CIDCSVLLDGDADS--RFRTLRSHKNRFGA--VNELGVFAMTEQGLR 278 P + +D V L + R K R G G F +++ GL Sbjct: 174 DPSDPRYAMVDGVVALAQERVGVKSVRLAEVTKFRGGPQVPGRHG-FEISDNGLS 227 >UniRef50_C7NAE3 Endopeptidase La n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7NAE3_LEPBD Length = 541 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 354 ADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 +QD+ ++ + SA +A+ A++S+L + QD GE+ L+GEI + Sbjct: 428 YNQDIHIHFDDNSIPKDGPSAGIAITTAILSALTKLEIRQDTGFTGEITLSGEILAIGGV 487 Query: 413 QERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFDDL 460 +I K G R I+P N + KK E +++ V + + ++ Sbjct: 488 TSKIEGGYKAGIRNFIIPKENEAQLLRIDKKILEDIKVHLVSDYKEVFEILKNI 541 >UniRef50_A8SNF0 ATP-dependent protease La n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=A8SNF0_9FIRM Length = 782 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 355 DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 ++D+ ++V G V SA + + A+VS+L +R + + + GEV L G + + + Sbjct: 668 EKDIHIHVPEGAVPKDGPSAGITMTTAIVSALTNRKVNRQFAMTGEVTLRGRVLAIGGLK 727 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFDD 459 E+I A ++G + I+P N +P++ E ++I+ V + + L + + Sbjct: 728 EKILAANRYGIKNIIIPKENEVDIDEIPQEIRETLKIYTVSDVCEVLDLVLE 779 >UniRef50_C5NYU5 ATP-dependent protease La n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYU5_9BACL Length = 765 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 7/117 (5%) Query: 350 GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRP 408 G+ ++ D+ ++V G V SA + + ++ S+L +P+ ++ + GE+ L G++ P Sbjct: 648 GVNFSEIDIHLHVPEGAVPKDGPSAGITITTSVYSALTKKPVDNNIAMTGEMTLHGKVLP 707 Query: 409 VPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFDD 459 + +E+I + K I+P N +P++ E + I V + + + Sbjct: 708 IGGVKEKILSSEKMNINTIIIPTKNKKDLIDIPEEVLEKLTIHTVDNIQEVFKIVFG 764 >UniRef50_P0A9M1 ATP-dependent protease La n=430 Tax=cellular organisms RepID=LON_ECOL6 Length = 784 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 355 DQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 +D+ V+V G + SA +A+ A+VS L P+ D+ + GE+ L G++ P+ + Sbjct: 661 KRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLK 720 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 E++ A + G + ++P N +P + I VK++ + L++ Sbjct: 721 EKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTL 769 >UniRef50_B5CKS9 ATP-dependent protease La n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKS9_9FIRM Length = 755 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Query: 353 MADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + D D+ ++V G V SA + L A+ S L + + + + GEV L G + P+ Sbjct: 642 LDDHDLHIHVPAGAVPKDGPSAGITLTTALASLLTGKKVSPEYAMTGEVSLRGGVMPIGG 701 Query: 412 GQERISEAAKHGFRRAIVPAANVP------KKAPEGMQIFGVKKLSDALSVF 457 E++ A + G + ++PA N + ++I VKK+++ L + Sbjct: 702 LPEKLMAAQRAGITKVLIPADNEQDLDDVADEVKNKLEIIPVKKVTEVLKLV 753 >UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Tax=Methanobrevibacter RepID=RADB_METS3 Length = 234 Score = 97.6 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 22/229 (9%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYV 128 + E+ + T D +L GGV G+ I G PG+GKS + L +A+Q K +YV Sbjct: 6 NFEDNHKIPTN-SGIDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYV 64 Query: 129 TGEE--SLQQVAMRA-HRLGLPTDNLNMLSET-------SIEQICLIAEEE--QPKLMVI 176 E S+ ++ A +N+ + T +++ I L + L V+ Sbjct: 65 DTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVL 124 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV-------TKDGSLA- 228 DS ++ D S ++ + L + A+ VA+V+ + KD A Sbjct: 125 DSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDDDNKDVVKAV 184 Query: 229 GPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGL 277 G +L++ + L+ + + R ++R + F + E+G+ Sbjct: 185 GGTILQYWSKTIIQLERNDEFNKRVATLKRHRSIGEGKQATFKIVERGI 233 >UniRef50_Q2YPX3 ATP-dependent protease La n=377 Tax=Bacteria RepID=LON_BRUA2 Length = 812 Score = 97.6 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 7/110 (6%) Query: 353 MADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 +D+ V+V G + SA +A++ A+VS L P+ +D+ + GEV L G + P+ Sbjct: 669 FDKRDIHVHVPEGATPKDGPSAGIAMVTAIVSVLTGIPVRKDIAMTGEVTLRGRVLPIGG 728 Query: 412 GQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 +E++ + G ++ ++P N +P ++I V ++ + L Sbjct: 729 LKEKLLATLRGGIKKVLIPEENAKDLAEIPDNVKNNLEIVPVSRVGEVLK 778 >UniRef50_C4ZGF6 ATP-dependent protease La n=5 Tax=Bacteria RepID=C4ZGF6_EUBR3 Length = 770 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 355 DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 D+ +++ G V SA + + AM+S++ DR + D+ + GE+ L G + P+ + Sbjct: 658 KHDIHIHIPEGAVPKDGPSAGITMATAMLSAITDRAVRADVAMTGEITLRGRVLPIGGLK 717 Query: 414 ERISEAAKHGFRRAIVPAANVP------KKAPEGMQIFGVKKLSDA 453 E++ A G + +P N K+ +GM+I V++ S Sbjct: 718 EKLLAAKVIGIKTVCIPKDNEKDLEEISKEITDGMEIVPVERFSQV 763 >UniRef50_Q2NEP8 Putative ATP-dependent protease La n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEP8_METST Length = 825 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 13/133 (9%) Query: 329 VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRD 387 +A L ++RLA +L + +D+ ++V G + SA + LL + S + + Sbjct: 673 IAQSLIKSRLATVL------KDSDIEKRDIHIHVPAGSIPKDGPSAGVTLLTTIASLVTN 726 Query: 388 RPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEG 441 P+ L + GE+ L G++ PV +E++ A + G + ++P N+ + + Sbjct: 727 TPVDSTLAMTGEISLRGKVLPVGGIKEKVIAAHRSGIKTVLLPEENMKDLDDVPCEVKDD 786 Query: 442 MQIFGVKKLSDAL 454 M +K + + L Sbjct: 787 MTFKPMKTVDEVL 799 >UniRef50_A7HK39 ATP-dependent protease La n=11 Tax=Thermotogaceae RepID=A7HK39_FERNB Length = 810 Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 352 QMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVP 410 + D+ V+V G V SA + + A+VS +++ P+ D+ + GE+ L G + PV Sbjct: 676 KFTKNDIHVHVPEGAVPKDGPSAGVTITTALVSVVKNIPVRNDIAMTGEITLRGRVLPVG 735 Query: 411 SGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 +E++ A + G I+P N VP+ M+ V+ + + L V Sbjct: 736 GIKEKVMAAYRKGIYHVILPKKNEVDIEKVPEVVRTKMKFTFVETIEEVLEV 787 >UniRef50_A9KH99 ATP-dependent protease La n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KH99_CLOPH Length = 809 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%) Query: 353 MADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 D+ +++ G + SA + + AM+S++ + + + + GE+ L G + P+ Sbjct: 696 FQKNDIHIHIPEGATPKDGPSAGITMATAMLSAITGKKVHAKVAMTGEITLRGRVLPIGG 755 Query: 412 GQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALS 455 +E++ A G ++ ++P N P + EGM++ V + + L Sbjct: 756 LKEKLLAAKNTGIKKVLIPEKNRPDLEELEQEITEGMEVICVATMDEVLK 805 >UniRef50_Q6MH16 ATP-dependent protease La n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH16_BDEBA Length = 831 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 353 MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 ++ DV +++ G V SA +AL ++VS++ P+ + + + GEV L G + + Sbjct: 688 FSNIDVHIHLPEGAVPKDGPSAGIALTTSIVSAIMKVPVKRTVAMTGEVSLRGRVMAIGG 747 Query: 412 GQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 +E+I A + G + I P N +PK + +++ V + L Sbjct: 748 LKEKILAAHRGGIKLIICPKENEKDLKDIPKDVMKDLKVILVDHVDQVL 796 >UniRef50_C1VAG2 RecA-superfamily ATPase possibly involved in signal transduction n=2 Tax=Halobacteriaceae RepID=C1VAG2_9EURY Length = 248 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 27/224 (12%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ--MKTLYVTGEESL 134 TG + D +L GG+V +A+LI GNPG GKS L LQ L + +Y+T EE+ Sbjct: 5 VKTGVEGLDSILNGGIVKNAAVLISGNPGTGKSILGLQYLYNGVDKYDEGGIYLTFEEAE 64 Query: 135 QQVAMRAHRLGLP-------------TDNLNMLSETS----IEQICLIAEEEQPKLMVID 177 + A +G D +L + +++I ++ +V+D Sbjct: 65 DDIQEAAESIGFDRWSEYVEEGKIKVYDKRTLLRDGDFSSTLDRILGDLQDTSYDRLVLD 124 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 S+ + + + R+ K + ++ + + Sbjct: 125 SLTMFQLF-----FEDEKEQRQYLLKFIDILKDSDLTSLLTTEQSAIFPETEIGLENFLT 179 Query: 238 DCSVLLDGDADSRF--RTLRSHKNRFGAV-NELGVFAMTEQGLR 278 D ++ L R + K R ++ N + + E G++ Sbjct: 180 DGNIYLIQSPAGATSNRYVWVAKMRKQSIKNSMFPLEINEGGIQ 223 >UniRef50_Q5V5J9 RecA/helicase-like n=1 Tax=Haloarcula marismortui RepID=Q5V5J9_HALMA Length = 496 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 72/216 (33%), Gaps = 34/216 (15%) Query: 70 SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYV 128 S + + S+G D +L GG+V G L+ G PG GK+ L Q L L L++ Sbjct: 4 SERQFTQLSSGISGLDSLLRGGLVEGRLYLVIGPPGTGKTLLGTQFLEAGLEAGDDVLFI 63 Query: 129 TGEESLQQVAMRAHRLGLPTDNLNMLSETS------------------------IEQICL 164 EES + LG+ N L I I Sbjct: 64 HAEESASDLRANTAELGIDISNATFLDVGPDSEFFEEAESYDVVKPRDVEDGHLISDIRE 123 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 E P ++ID I + + Q R+ RF + R ++ TK Sbjct: 124 AIERVDPDRVLIDPITHFQYLEP-----TEYQFRKRVISFARFLQDRETTVL----ATKT 174 Query: 225 GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNR 260 S L D + L + R +R K+R Sbjct: 175 PSNQMDTQLRSLSDGIISLSYGDEKAGRRIRLRKHR 210 Score = 94.2 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 25/232 (10%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGE 131 + +FS G E D +L GG+ G+ ++ G G GKST + L A L + Sbjct: 244 DPTQFSAGVPELDSLLDGGLERGTVTILSGPSGVGKSTTATEFLASAAADGSPALAYLFD 303 Query: 132 ESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLI--------------AEEEQPKLMVID 177 ES+ + R G+P L +E++ + AEE +L+VID Sbjct: 304 ESIDTFSHRCETFGIPLSELRDEGTLLVEEVESLALSPEEFANRVKTQAEERGAELVVID 363 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV--LEH 235 I + ++ V ++R LT+ A+V++ L P + + Sbjct: 364 GIAG-YKNAIKRGQDDV-ELRRRLHALTQQLTRGNTAVVLIDQRRDVTGLHEPTSENVSY 421 Query: 236 CIDCSV---LLDGDADSRFRTLRSHKNRFGAVNELG-VFAMTEQGLREVSNP 283 D V ++ + + R + + K R G + F +T GL+ V +P Sbjct: 422 LADNIVFQNYIEVAGELQ-RVVGALKKRVGGFETVPRRFEITADGLQ-VGDP 471 >UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y8Q8_COPPD Length = 768 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 10/123 (8%) Query: 347 RHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 + G+ D+ V+ G + SA + + AM+S+L+ P+P DL + GE+ + Sbjct: 643 KQLGIDEEFYKKYDIHVHAPEGAIPKDGPSAGITIATAMISALKKEPVPNDLAMTGEITI 702 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 G++ P+ +E++ A + G R I+P N + + + ++ + V + + + Sbjct: 703 TGKVLPIGGVKEKVLAAHRIGLDRVILPKDNKINMEEIGDEVKKKLRFYFVDTMDQVVEI 762 Query: 457 FDD 459 Sbjct: 763 VFG 765 >UniRef50_B0VJ87 ATP-dependent protease La n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ87_9BACT Length = 786 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Query: 353 MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 D+ ++ G V SA L L +A+ S + + D+ + GE+ L G++ + Sbjct: 657 FETSDIHIHFPSGAVPKDGPSAGLTLTVALASLFTGQKVRHDIAMTGEITLEGKVLAIGG 716 Query: 412 GQERISEAAKHGFRRAIVPAANV------PKKAPEGMQIFGVKKLSDALSVF 457 +E++ A + G +R ++P N P GM+I V+++ +A+ + Sbjct: 717 LKEKLLAAKRAGIKRVVIPEENRETLSDFPADILAGMEITYVQEIQEAIRIL 768 >UniRef50_A2BL46 Predicted ATPase n=17 Tax=Archaea RepID=A2BL46_HYPBU Length = 274 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 35/215 (16%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGEE 132 + R TG FD+++ GG+ G + + G PG GK+ + + + +Q K +YVT EE Sbjct: 8 IERLPTGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYVTTEE 67 Query: 133 SLQQVAMRAHRLGLP-------------------TDNLNMLSETSIEQICL-IAEEEQP- 171 + + + +A G D+ L+E +E + I E ++ Sbjct: 68 TRESIIKQAAMFGFDFEKAIDDGKLVIIDALMGRHDDPWSLTELDVETLVNKIIEAKRYL 127 Query: 172 ----KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 +VIDS+ + A R + Y+ R ++ SL Sbjct: 128 GYGRARLVIDSMSAFWLDK-------PAMARRYSYYVKRILARWDFTALLTSQYAVTTSL 180 Query: 228 AGPKVLEHCIDCSVLLDGD--ADSRFRTLRSHKNR 260 +EH D + R + K R Sbjct: 181 GFGFGIEHVADGIIRFRKAVVRGELRRYVIIEKMR 215 >UniRef50_C6A5H8 ATPase, RecA superfamily n=4 Tax=Thermococcus RepID=C6A5H8_THESM Length = 241 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 38/240 (15%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMK 124 + + SL R STG K D ++GGG++PG ++ G PG+GK+TL +Q L + A+ K Sbjct: 6 MENKSLPIYSRVSTGVKGLDNLIGGGLIPGRVYVVTGPPGSGKTTLGIQFLVEGAKNGEK 65 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETS-------------------------I 159 +Y++ + + + + N+LS + Sbjct: 66 GIYISLVDDSKTIIQ-----DMLYYRFNLLSHIRSKKIVIYDLGAVLSQGGKKPTWKEIL 120 Query: 160 EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVG 219 ++I I E K +VIDS ++ R+ L + T + +++ Sbjct: 121 KEIKRIILHENAKRVVIDSFTP-----LEFMVQDPENKRKEVVGLIKLLSTMEITAIVIT 175 Query: 220 HVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNE-LGVFAMTEQGLR 278 + + + + + + R L+ K R + + L +TE G+ Sbjct: 176 EMIESEKYTDDYYVASGV-VIMHHFMRQYNMIRALQILKMRGTSHDSNLKKIKITENGIE 234 >UniRef50_C4WXJ0 ACYPI007384 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WXJ0_ACYPI Length = 191 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 347 RHGGLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGE 405 + + + + V V++ GG+ SA + ++ A++S PL + + GE+ L G Sbjct: 53 KKNEVNIDNFCVHVHLPTGGIPKDGPSAGITIVCALISLFWKIPLRPMITMTGEISLNGY 112 Query: 406 IRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVF 457 + PV +E+I A R I+P N +P E + I VK L + L + Sbjct: 113 VLPVGGVKEKILAAYNSNIRTVIIPDHNMKDLKTIPNNIREDLNIIPVKHLEEVLDIV 170 >UniRef50_A0BE69 Lon protease homolog n=3 Tax=Paramecium tetraurelia RepID=A0BE69_PARTE Length = 791 Score = 95.3 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%) Query: 342 LAVLHR-HGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGE 399 + +L + + + D+ ++ G + SA +A+ A+VS L + D+ + GE Sbjct: 652 IKILSKSNTNINFDALDIHIHFPAGATPKDGPSAGVAITTAIVSLLTGLKVKSDIAMTGE 711 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVP---AANVPKKAP---EGMQIFGVKKLSDA 453 + L G + PV +E+I A + G I+P AN+ P E M I VK + Sbjct: 712 ITLTGRVLPVGGIKEKILGAFESGIFSVIIPHRNKANLVDVEPEIREKMSIHLVKTIDQV 771 Query: 454 LSV 456 L + Sbjct: 772 LQI 774 >UniRef50_C0R248 ATP-dependent protease La n=3 Tax=Brachyspira RepID=C0R248_BRAHW Length = 841 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 358 VFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 + +++ G + SA + + A++S ++ + D + GE+ L G++ P+ +E+ Sbjct: 708 IHLHIPEGATPKDGPSAGITMATALLSLSMNKVIRNDTAMTGELSLNGKVLPIGGLKEKT 767 Query: 417 SEAAKHGF-RRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFDDL 460 A + GF + I+P N +P+ +G+ VK + + L Sbjct: 768 IAAKRLGFIKHIIIPHENIRDLDEIPENVKKGLTFHPVKDVKEVFDFMFKL 818 >UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borrelia RepID=LON2_BORBU Length = 813 Score = 94.9 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 357 DVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 ++ ++ G + SA + + A+ S L D+ +P DL + GEV L G + PV +E+ Sbjct: 703 EIHLHFPEGATPKDGPSAGITIATAIASILSDKKVPLDLAMTGEVTLKGFVLPVGGIKEK 762 Query: 416 ISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 + A ++G + I+P N +P++ + + + V L + + Sbjct: 763 VLAAYRNGISKVILPKDNKKDYSKLPEEVKDNIDVKFVSSLEEVFDYLN 811 >UniRef50_Q469F5 ATP-dependent protease La n=11 Tax=cellular organisms RepID=Q469F5_METBF Length = 802 Score = 94.6 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 7/111 (6%) Query: 351 LQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPV 409 D+ ++V G + SA + L A+ S + + + L + GE+ L+G + PV Sbjct: 664 FDFTSSDIHIHVPSGATPKDGPSAGVTLFTALTSLIIGKAVDPKLAMTGEITLSGAVLPV 723 Query: 410 PSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 +E++ A + G ++ I+P N VP+ A +Q V+ + + L Sbjct: 724 GGIKEKVLAAHRAGIKKIILPKENERDLEDVPEDARNELQFVPVETIEEVL 774 >UniRef50_C4PZ87 Lon protease homolog n=1 Tax=Schistosoma mansoni RepID=C4PZ87_SCHMA Length = 1036 Score = 94.6 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 348 HGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEI 406 L + + D+ ++V G + SA + ++ A++S +P+ +L + GE+ L G++ Sbjct: 918 KAALFLQESDIHLHVPQGATPKDGPSAGVTMVTALLSLACGKPVRPNLAMTGEISLTGKV 977 Query: 407 RPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALSV 456 PV +E++ A + G I+P N E +Q++ V+ + V Sbjct: 978 LPVGGIKEKVIAAKRGGITTIILPETNRKDYDDLAPFIKEDLQVYFVQHYKEIFPV 1033 >UniRef50_C6D886 ATP-dependent protease La n=5 Tax=Bacteria RepID=C6D886_PAESJ Length = 836 Score = 94.6 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 355 DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 ++D+ +++ G + SA + + A++S+L +R + +++ + GE+ L G + P+ + Sbjct: 712 NKDIHIHIPEGAIPKDGPSAGITMATALISALTNRYVSKEVAMTGEITLRGRVLPIGGLK 771 Query: 414 ERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 E+ A + G R+ ++P N +P M V + + L Sbjct: 772 EKSLAAHRAGIRKVLLPKDNERDLSDIPDSVRSAMTFVPVSHMDEVLQ 819 >UniRef50_B9LMB1 ATP-dependent protease La n=3 Tax=Chloroflexi (class) RepID=B9LMB1_CHLSY Length = 825 Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 7/111 (6%) Query: 353 MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + ++ +++ G V SA + L A++S+L P+ +D+ + GEV L G++ P+ Sbjct: 684 FEETNIHIHIPEGSVPKDGPSAGITLTTALISALTGTPVRRDVAMTGEVTLRGKVLPIGG 743 Query: 412 GQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 +E+ A + G R I+P N +P+K + + V + + L + Sbjct: 744 LKEKTLAAHRAGIRTFILPKENAKDISELPEKVRRELNLIPVSSMDEVLQI 794 >UniRef50_O66605 ATP-dependent protease La n=4 Tax=Aquificales RepID=LON_AQUAE Length = 795 Score = 94.2 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 353 MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + DV V+V G V SA +A+ A++S D P+ D+ + GE+ L G + PV Sbjct: 672 FSQVDVHVHVPEGAVPKDGPSAGVAIATALLSLFTDIPVRMDVAMTGEITLRGRVLPVGG 731 Query: 412 GQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQIFGVKKLSDALSV 456 +E+I A + I+PA N +P+ E M + V L + + Sbjct: 732 LKEKILAAKRAEIYEVILPAKNKDEVMEELPEYVREKMTLHFVDNLEEVFKI 783 >UniRef50_B1AIY7 ATP-dependent protease La n=15 Tax=Ureaplasma RepID=B1AIY7_UREP2 Length = 791 Score = 94.2 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 77/454 (16%), Positives = 151/454 (33%), Gaps = 107/454 (23%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG--EES-------------LQQV 137 + G I + G PG GK++L+ L ++ + + G +ES ++ Sbjct: 356 LKGPIICLVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEIRGHRKTYVGAMPGRI 415 Query: 138 AMRAHRLGLPTDNLNMLSETS-------IEQICLIAEEEQPK------------------ 172 + G+ + L +L E + + E P+ Sbjct: 416 IKGMKKAGV-INPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSK 474 Query: 173 --------------LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK--------T 210 +ID ++V+ ++ + + AK T Sbjct: 475 VMFMATANYYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFT 534 Query: 211 RGVAIVMVGHVTKDGSL------AGPKVLEHCIDCS--------VLLDGDADSRFRTLRS 256 ++ H TK+ + G V ++ ++ + L D + L Sbjct: 535 DDALDFIINHYTKEAGVRELDRQLGHIVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGK 594 Query: 257 HKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQA 316 K F E + + G+ + + + T+G V G Sbjct: 595 IKFDFNKKEETTIPGIV-NGMAYTAAGGDLLPIEVNHSTNGKGGNVTITGN--------- 644 Query: 317 LVDHSMMANPRRVAVGLEQNRLAILLAVLHRHG----GLQMADQDVFVNVV-GGVKVTET 371 M VA+G + A ++G + + D+ V+V GG+ Sbjct: 645 --LEKTMNESVSVALGFVK-------ANADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGP 695 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP- 430 SA +A+ A++SSL RP+ L + GE+ L G + + +E++ A + G R I+P Sbjct: 696 SAGIAITTAIISSLSQRPVRTTLSMTGEIMLRGNVGIIGGVKEKVISAYRAGVREIILPI 755 Query: 431 -----AANVPKKAPEGMQIFGVKKLSDALSVFDD 459 +VPK + ++I VK + ++ Sbjct: 756 DDERYLEDVPKYILDDIKIHLVKHYDEVYNIVFG 789 >UniRef50_A8STA7 ATP-dependent protease La n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8STA7_9FIRM Length = 767 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 7/110 (6%) Query: 353 MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 D +++ G V SA + + A+ S++ P+ + GE+ L GE+ P+ Sbjct: 653 FTKHDFHIHIPEGAVPKDGPSAGITMATALYSAIFSAPVDGKTAMTGEITLRGEVLPIGG 712 Query: 412 GQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALS 455 +E++ A G +R ++PAAN G++I V K+ L Sbjct: 713 LKEKLLAAKLQGVKRVLIPAANESDYLQLDFDIVSGLEIHLVDKMRQVLD 762 >UniRef50_Q4UJI0 ATP-dependent protease La, bacterial type n=1 Tax=Rickettsia felis RepID=Q4UJI0_RICFE Length = 815 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 353 MADQDVFVNVVGGVKVT-ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + D+ +++ G SA + + A+ S L ++ + QD+ + GE+ L G + + Sbjct: 670 LKTHDIHIHLPAGATPKNGPSAGITIYTALYSLLSNKKIRQDIAMTGEITLKGRVLEIGG 729 Query: 412 GQERISEAAKHGFRRAIVPAANVPK--KAPEGMQ----IFGVKKLSDALSVFDD 459 +E+++ A + G + I+P N + PE ++ I V S+ L + D Sbjct: 730 LKEKLTAAVREGIKEVIIPKDNERDLAEIPEEIKQALIIHTVSNTSEILRIVFD 783 >UniRef50_Q9ZD92 ATP-dependent protease La n=15 Tax=Rickettsieae RepID=LON_RICPR Length = 784 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 355 DQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQ 413 D D+ ++V G + SA AL +VS + P+ + + + GE+ L G + P+ + Sbjct: 661 DFDIHIHVPAGAIPKDGPSAGCALFTTIVSLMTKIPVHRTVAMTGEITLRGNVLPIGGLK 720 Query: 414 ERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALS 455 E++ A++ G + ++P NV E ++I V + L Sbjct: 721 EKLLAASRGGIKTVLIPEENVKDLKDIPPNIKENLEIISVSNIDQVLK 768 >UniRef50_C1AAM1 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAM1_GEMAT Length = 847 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 7/110 (6%) Query: 354 ADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 + + ++V G + SA +A+ A+VS L +R + +D+ + GE+ L G + P+ Sbjct: 723 SASEAHIHVPAGAIPKDGPSAGIAIATALVSELSNRKVRRDVSMTGEITLRGRVLPIGGV 782 Query: 413 QERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 +E++ A + G + I+P AN VP + + V+ LS+ L++ Sbjct: 783 KEKVLGAHRAGIKEVIIPKANEADLEDVPDEVRAQLTFHPVETLSEVLAI 832 >UniRef50_D1CFP7 ATP-dependent protease La n=4 Tax=Bacteria RepID=D1CFP7_THET1 Length = 846 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 353 MADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPS 411 + + V ++V G + + SA + + A+ S+ +P+ D+ + GE+ L G++ PV Sbjct: 723 LDHKTVHIHVPAGAQPKDGPSAGVTMATALASAAIGKPVRSDVAMTGEITLRGKVLPVGG 782 Query: 412 GQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 +E++ A + G R I+P N +P++ + M+ V + L Sbjct: 783 IKEKVLAAHRAGIRTVILPKRNERDLEDLPEELRKEMEFVFVDSVDQVLQ 832 >UniRef50_C1AAY4 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAY4_GEMAT Length = 835 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 142/408 (34%), Gaps = 60/408 (14%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL- 144 R L GG G + G PG GK++L + + + V G ++ Sbjct: 353 RKLRGGDPTGPILCFVGPPGTGKTSLGEAIAKSIDRAFYRISVGGVRDEAEIRGHRRTYV 412 Query: 145 ----GLPTDNLNMLSETS----IEQICLI------AEEEQPKLMVIDSIQ--VMHMADVQ 188 G+ L + I++I + + L V+D Q + Sbjct: 413 GAMPGMLIQALRRVEVRDPVIMIDEIDKMSSGGSGGDPTAAMLEVLDPSQNTTFVDHYLN 472 Query: 189 SSPGSVAQVRETAAY-LTRF---AKTRGVAIVMVGHVTKDG-SLAG----PKVLE----- 234 + + A L + R I + G+ ++ +A P++LE Sbjct: 473 LPFDLSSTLFICTANNLFDIPGPLRDRMEVIRIAGYTIEEKVEIAQRYLIPRLLEDHGLT 532 Query: 235 ----HCIDCSVLLDGDADSRFRTLRSH----------KNRFGAVNELGVFAMTEQGLREV 280 H + + SR LR+ + R A + + + ++ Sbjct: 533 ESDLHIPESVLGFITSRYSREAGLRTFERSIASIMRKRARAKADGDDTAWEINAVRTEDI 592 Query: 281 SNPSAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL--EQNR 337 + + E G+ + W T L+ I+AL N + G + R Sbjct: 593 LGAPRFPMEEAEKEPEIGAVTGLAWTSTGGELMTIEALRMP---GNGKLTVTGQLGDVMR 649 Query: 338 LAILLA---VLHRHGGL-----QMADQDVFVNV-VGGVKVTETSADLALLLAMVSSLRDR 388 ++ A V R L + + D+ ++ G + SA +A+ LA+ S+L R Sbjct: 650 ESVDAAYSFVRSRAQALGIEETEFREADLHLHFPAGSIPKDGPSAGIAVTLALASALSRR 709 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK 436 P+ +DL + GEV L G + + +E++ A + G R I+P N Sbjct: 710 PVRRDLALTGEVTLRGRVLEIGGVKEKVLAAYRAGLREVILPKGNEKD 757 >UniRef50_B6AMK4 ATP-dependent protease La n=2 Tax=Leptospirillum sp. Group II RepID=B6AMK4_9BACT Length = 816 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 354 ADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 + +D+ ++V G + SA + + +AM S+ +RP+ D+ + GE+ L G I P+ Sbjct: 695 SRKDIHLHVPEGAIPKDGPSAGITMAVAMASAATNRPVRGDIAMTGEITLRGRILPIGGL 754 Query: 413 QERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 +E++ A + + ++P N +P + ++I V+++ Sbjct: 755 KEKLLAARRFSMKEVLIPEENERDLSEIPAEVKNALRITPVQRMEQVFDRVF 806 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organ... 568 e-160 UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicut... 551 e-155 UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteri... 544 e-153 UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteri... 541 e-152 UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=... 540 e-152 UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae ... 529 e-148 UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridi... 526 e-147 UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=... 524 e-147 UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termi... 521 e-146 UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobact... 521 e-146 UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquifica... 520 e-146 UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae ... 518 e-145 UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B... 514 e-144 UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma lingua... 511 e-143 UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria ... 511 e-143 UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius t... 508 e-142 UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocace... 507 e-142 UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri... 506 e-142 UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus ... 505 e-142 UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=... 505 e-141 UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae... 505 e-141 UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acet... 504 e-141 UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteri... 503 e-141 UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteri... 503 e-141 UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacter... 499 e-140 UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas w... 499 e-139 UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepI... 497 e-139 UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bac... 497 e-139 UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira mul... 497 e-139 UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobact... 495 e-138 UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=... 494 e-138 UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriacea... 492 e-138 UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisu... 490 e-137 UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio ac... 489 e-136 UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae... 488 e-136 UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacte... 487 e-136 UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium m... 485 e-135 UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succ... 485 e-135 UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus Rep... 484 e-135 UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain pr... 482 e-134 UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vagi... 480 e-134 UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus ... 480 e-134 UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C... 480 e-134 UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis ste... 478 e-133 UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium ... 477 e-133 UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickett... 477 e-133 UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID... 475 e-132 UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum s... 475 e-132 UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A... 474 e-132 UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickett... 472 e-131 UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter ked... 472 e-131 UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum f... 471 e-131 UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloac... 471 e-131 UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candi... 469 e-130 UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio Re... 467 e-130 UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales Re... 466 e-130 UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteri... 465 e-129 UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1... 463 e-129 UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID... 462 e-128 UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponem... 460 e-128 UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales... 460 e-128 UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincen... 460 e-128 UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales Re... 460 e-128 UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea may... 457 e-127 UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilon... 455 e-126 UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria R... 455 e-126 UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chrom... 454 e-126 UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobac... 453 e-126 UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibriona... 453 e-126 UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibri... 447 e-124 UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID... 447 e-124 UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thal... 444 e-123 UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinob... 443 e-123 UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae Re... 443 e-123 UniRef50_B7GN99 DNA repair protein radA n=20 Tax=Bifidobacteriac... 443 e-123 UniRef50_C7I4G6 DNA repair protein radA n=3 Tax=Bacteria RepID=C... 442 e-122 UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms Rep... 441 e-122 UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae R... 441 e-122 UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp... 440 e-122 UniRef50_Q9FK38 DNA repair protein-like n=8 Tax=rosids RepID=Q9F... 438 e-121 UniRef50_B8I5Q5 AAA ATPase n=13 Tax=Clostridiales RepID=B8I5Q5_C... 438 e-121 UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales ... 437 e-121 UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1... 435 e-120 UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium ... 433 e-120 UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae R... 432 e-119 UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales... 431 e-119 UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID... 431 e-119 UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A... 426 e-118 UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacte... 425 e-117 UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibac... 418 e-115 UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B... 418 e-115 UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga letti... 417 e-115 UniRef50_C5CHP4 DNA repair protein radA n=1 Tax=Kosmotoga oleari... 415 e-114 UniRef50_D1Y454 DNA repair protein radA n=1 Tax=Pyramidobacter p... 414 e-114 UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C... 407 e-112 UniRef50_A4SAK3 Predicted protein (Fragment) n=4 Tax=cellular or... 407 e-112 UniRef50_C7RFC7 DNA repair protein radA n=1 Tax=Anaerococcus pre... 406 e-111 UniRef50_B7FVI7 Predicted protein (Fragment) n=2 Tax=Bacillariop... 403 e-111 UniRef50_C1N8F6 DNA repair protein-related n=1 Tax=Micromonas pu... 390 e-107 UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltrans... 372 e-101 UniRef50_B5W8S1 DNA repair protein radA n=2 Tax=Arthrospira RepI... 371 e-101 UniRef50_B5Y8V7 DNA repair protein n=1 Tax=Coprothermobacter pro... 348 3e-94 UniRef50_C9M763 DNA repair protein RadA n=1 Tax=Jonquetella anth... 341 2e-92 UniRef50_D0N9B5 DNA repair protein radA n=1 Tax=Phytophthora inf... 294 5e-78 UniRef50_UPI0000382A4B COG1066: Predicted ATP-dependent serine p... 242 2e-62 UniRef50_C1TLA8 Putative uncharacterized protein n=1 Tax=Dethios... 235 3e-60 UniRef50_B5AXB1 Protease (Fragment) n=171 Tax=cellular organisms... 219 2e-55 UniRef50_C1TS01 Putative uncharacterized protein (Fragment) n=1 ... 207 9e-52 UniRef50_B3PN08 Heat shock ATP-dependent protease n=2 Tax=Mycopl... 198 2e-49 UniRef50_C1AB48 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 198 4e-49 UniRef50_A5IYF2 Heat shock ATP dependent protease n=3 Tax=Bacter... 195 3e-48 UniRef50_C6NU33 DNA repair protein RadA (Fragment) n=1 Tax=Acidi... 195 3e-48 UniRef50_B9LMB1 ATP-dependent protease La n=3 Tax=Chloroflexi (c... 191 5e-47 UniRef50_O84348 ATP-dependent protease La n=15 Tax=Chlamydiales ... 190 6e-47 UniRef50_P43864 ATP-dependent protease La n=107 Tax=Bacteria Rep... 190 8e-47 UniRef50_D1CFP7 ATP-dependent protease La n=4 Tax=Bacteria RepID... 187 1e-45 UniRef50_O66605 ATP-dependent protease La n=4 Tax=Aquificales Re... 185 4e-45 UniRef50_A7HK39 ATP-dependent protease La n=11 Tax=Thermotogacea... 185 4e-45 UniRef50_Q1IWD7 ATP-dependent protease La n=9 Tax=Deinococci Rep... 185 4e-45 UniRef50_P0A9M1 ATP-dependent protease La n=430 Tax=cellular org... 185 4e-45 UniRef50_Q1NXJ5 Peptidase S16, ATP-dependent protease La n=2 Tax... 184 5e-45 UniRef50_B1AIY7 ATP-dependent protease La n=15 Tax=Ureaplasma Re... 184 5e-45 UniRef50_Q04VA7 ATP-dependent protease La n=6 Tax=Leptospira Rep... 184 7e-45 UniRef50_C1AAY4 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 182 2e-44 UniRef50_Q3JBB6 ATP-dependent protease La n=2 Tax=Nitrosococcus ... 182 2e-44 UniRef50_C9XRQ1 ATP-dependent protease La n=12 Tax=Clostridiales... 181 5e-44 UniRef50_B4UAX6 ATP-dependent protease La n=18 Tax=Bacteria RepI... 181 6e-44 UniRef50_A9B3R2 ATP-dependent protease La n=8 Tax=Bacteria RepID... 180 8e-44 UniRef50_P36774 ATP-dependent protease La 2 n=51 Tax=Bacteria Re... 180 1e-43 UniRef50_D1N951 ATP-dependent protease La n=1 Tax=Victivallis va... 179 2e-43 UniRef50_Q2NEP8 Putative ATP-dependent protease La n=1 Tax=Metha... 179 2e-43 UniRef50_Q469F5 ATP-dependent protease La n=11 Tax=cellular orga... 179 2e-43 UniRef50_Q2SRX5 ATP-dependent protease La n=4 Tax=Mollicutes Rep... 179 2e-43 UniRef50_B1C8C1 ATP-dependent protease La n=1 Tax=Anaerofustis s... 178 3e-43 UniRef50_Q2YPX3 ATP-dependent protease La n=377 Tax=Bacteria Rep... 178 3e-43 UniRef50_Q8RHK0 ATP-dependent protease La n=11 Tax=cellular orga... 178 4e-43 UniRef50_C4FZN4 ATP-dependent protease La n=1 Tax=Abiotrophia de... 178 5e-43 UniRef50_A3ESL4 ATP-dependent protease La n=2 Tax=Leptospirillum... 178 5e-43 UniRef50_C0R248 ATP-dependent protease La n=3 Tax=Brachyspira Re... 178 5e-43 UniRef50_B9L019 ATP-dependent protease La n=8 Tax=Bacteria RepID... 178 5e-43 UniRef50_C5NYU5 ATP-dependent protease La n=1 Tax=Gemella haemol... 177 6e-43 UniRef50_Q65GJ6 ATP-dependent protease La n=16 Tax=Bacteria RepI... 177 7e-43 UniRef50_C0DC21 Putative uncharacterized protein (Fragment) n=1 ... 177 1e-42 UniRef50_A0BE69 Lon protease homolog n=3 Tax=Paramecium tetraure... 177 1e-42 UniRef50_B8GX12 ATP-dependent protease La n=79 Tax=cellular orga... 176 1e-42 UniRef50_Q4A9G0 Heat shock ATP-dependent protease n=7 Tax=Bacter... 176 2e-42 UniRef50_D1B1C1 ATP-dependent protease La n=7 Tax=Epsilonproteob... 176 2e-42 UniRef50_B2KCC0 ATP-dependent protease La n=2 Tax=Bacteria RepID... 176 2e-42 UniRef50_B8DJE4 ATP-dependent protease La n=60 Tax=Bacteria RepI... 176 2e-42 UniRef50_Q3A334 ATP-dependent protease La n=5 Tax=Bacteria RepID... 175 2e-42 UniRef50_B0VJ87 ATP-dependent protease La n=1 Tax=Candidatus Clo... 175 2e-42 UniRef50_A9B5N1 ATP-dependent protease La n=1 Tax=Herpetosiphon ... 175 3e-42 UniRef50_D1C5L6 ATP-dependent protease La n=2 Tax=Bacteria RepID... 175 3e-42 UniRef50_A8Z5Z0 ATP-dependent protease La n=7 Tax=Flavobacteria ... 174 5e-42 UniRef50_A7NPJ3 ATP-dependent protease La n=4 Tax=Roseiflexus Re... 174 5e-42 UniRef50_C1TMM3 ATP-dependent protease La n=2 Tax=Synergistaceae... 174 5e-42 UniRef50_Q31FD3 ATP-dependent protease La n=46 Tax=Bacteria RepI... 174 5e-42 UniRef50_C6HYB7 ATP-dependent protease La n=1 Tax=Leptospirillum... 174 6e-42 UniRef50_B5YK35 ATP-dependent protease La 1 n=1 Tax=Thermodesulf... 174 6e-42 UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y... 174 7e-42 UniRef50_B9XB79 ATP-dependent protease La n=2 Tax=Verrucomicrobi... 174 7e-42 UniRef50_Q4A696 Heat shock ATP-dependent protease n=1 Tax=Mycopl... 173 1e-41 UniRef50_C7RG14 ATP-dependent protease La n=3 Tax=Anaerococcus R... 173 1e-41 UniRef50_B6AMK4 ATP-dependent protease La n=2 Tax=Leptospirillum... 173 1e-41 UniRef50_Q01QV2 ATP-dependent protease La n=6 Tax=Bacteria RepID... 172 2e-41 UniRef50_C4ZGF6 ATP-dependent protease La n=5 Tax=Bacteria RepID... 171 4e-41 UniRef50_Q0SPS3 ATP-dependent protease n=25 Tax=Clostridia RepID... 171 4e-41 UniRef50_C0B7I7 Putative uncharacterized protein n=1 Tax=Coproco... 171 6e-41 UniRef50_C7NAL8 ATP-dependent protease La n=9 Tax=Fusobacteriace... 170 1e-40 UniRef50_C0HA85 Lon protease homolog n=1 Tax=Salmo salar RepID=C... 170 1e-40 UniRef50_Q59185 ATP-dependent protease La n=20 Tax=Borrelia RepI... 170 1e-40 UniRef50_Q9ZD92 ATP-dependent protease La n=15 Tax=Rickettsieae ... 169 2e-40 UniRef50_C5RPE3 ATP-dependent protease La n=1 Tax=Clostridium ce... 168 3e-40 UniRef50_Q6ML73 ATP-dependent protease La n=1 Tax=Bdellovibrio b... 168 3e-40 UniRef50_A9KH99 ATP-dependent protease La n=1 Tax=Clostridium ph... 168 3e-40 UniRef50_Q4P2V5 Lon protease homolog n=4 Tax=cellular organisms ... 168 4e-40 UniRef50_C1AAM1 ATP-dependent protease La n=1 Tax=Gemmatimonas a... 168 4e-40 UniRef50_P37945 ATP-dependent protease La 1 n=26 Tax=Firmicutes ... 168 5e-40 UniRef50_Q1J1A4 ATP-dependent protease La n=8 Tax=Deinococci Rep... 167 6e-40 UniRef50_B7FSL4 Lon protease homolog n=2 Tax=Bacillariophyta Rep... 167 7e-40 UniRef50_A8SNF0 ATP-dependent protease La n=3 Tax=Clostridiales ... 167 8e-40 UniRef50_Q9XW87 Protein Y75B8A.4, partially confirmed by transcr... 167 1e-39 UniRef50_C9RQZ9 ATP-dependent protease La n=1 Tax=Fibrobacter su... 166 2e-39 UniRef50_C0EJ55 ATP-dependent protease La n=4 Tax=Clostridiales ... 165 3e-39 UniRef50_Q7KUT2 Lon protease homolog n=10 Tax=Coelomata RepID=Q7... 165 3e-39 UniRef50_C4Z1T4 ATP-dependent protease La n=25 Tax=Bacteria RepI... 165 3e-39 UniRef50_UPI00006CFDB8 ATP-dependent protease La family protein ... 165 3e-39 UniRef50_C3YBR1 Lon protease homolog n=2 Tax=Eumetazoa RepID=C3Y... 165 3e-39 UniRef50_Q2NJE3 ATP-dependent protease La n=4 Tax=Candidatus Phy... 165 4e-39 UniRef50_B2RII6 ATP-dependent protease La n=52 Tax=Bacteria RepI... 165 5e-39 UniRef50_P36776 Lon protease homolog, mitochondrial n=33 Tax=Coe... 164 6e-39 UniRef50_B3KXS5 Lon protease homolog n=22 Tax=cellular organisms... 164 7e-39 UniRef50_UPI00019062BC DNA repair protein RadA n=1 Tax=Rhizobium... 164 7e-39 UniRef50_Q6MH16 ATP-dependent protease La n=1 Tax=Bdellovibrio b... 164 7e-39 UniRef50_P42425 ATP-dependent protease La homolog n=146 Tax=Firm... 163 1e-38 UniRef50_UPI000180C54F PREDICTED: similar to Lon n=1 Tax=Ciona i... 163 1e-38 UniRef50_Q98Q49 HEAT SHOCK ATP-DEPENDENT PROTEASE n=2 Tax=Mycopl... 163 2e-38 UniRef50_O64948 Lon protease homolog 1, mitochondrial n=39 Tax=c... 162 2e-38 UniRef50_B5CKS9 ATP-dependent protease La n=1 Tax=Ruminococcus l... 162 2e-38 UniRef50_A4S6Y4 Lon protease homolog n=4 Tax=cellular organisms ... 162 2e-38 UniRef50_A8Q0K7 Putative uncharacterized protein n=1 Tax=Malasse... 162 3e-38 UniRef50_O83536 ATP-dependent protease La n=4 Tax=Treponema RepI... 162 3e-38 UniRef50_B3S7Y4 Lon protease homolog n=1 Tax=Trichoplax adhaeren... 162 3e-38 UniRef50_D1BA81 ATP-dependent protease La n=2 Tax=Synergistaceae... 161 3e-38 UniRef50_C5LQP8 Lon protease homolog n=3 Tax=Perkinsus marinus A... 161 4e-38 UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borre... 161 4e-38 UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter m... 161 5e-38 UniRef50_C3X6V3 ATP-dependent protease La n=2 Tax=Oxalobacter fo... 160 7e-38 UniRef50_B3ERM8 ATP-dependent protease La n=1 Tax=Candidatus Amo... 160 8e-38 UniRef50_C8VQK2 Mitochondrial ATP-dependent protease (Eurofung) ... 160 8e-38 UniRef50_A8STA7 ATP-dependent protease La n=1 Tax=Coprococcus eu... 160 9e-38 UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selen... 160 1e-37 UniRef50_Q02HT1 ATP-dependent protease La n=8 Tax=Proteobacteria... 160 1e-37 UniRef50_C3XNB5 ATP-dependent protease La n=4 Tax=Campylobactera... 160 1e-37 UniRef50_D0LIP5 ATP-dependent protease La n=1 Tax=Haliangium och... 160 1e-37 UniRef50_B0S2N4 ATP-dependent protease La n=11 Tax=Bacteria RepI... 160 1e-37 UniRef50_Q0CW39 ATP-dependent protease La 2 n=30 Tax=Leotiomycet... 159 2e-37 UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium... 159 2e-37 UniRef50_D2VDX6 Lon protease n=1 Tax=Naegleria gruberi RepID=D2V... 159 2e-37 UniRef50_A9F8L0 ATP-dependent protease La n=3 Tax=Proteobacteria... 158 4e-37 UniRef50_O69300 ATP-dependent protease La n=24 Tax=Epsilonproteo... 158 5e-37 UniRef50_P78025 ATP-dependent protease La n=4 Tax=Mycoplasma Rep... 157 6e-37 UniRef50_A6GAZ5 ATP-dependent protease La n=1 Tax=Plesiocystis p... 156 1e-36 UniRef50_A9ETZ9 ATP-dependent protease La n=2 Tax=Bacteria RepID... 156 1e-36 UniRef50_C6Q2E8 Peptidase S16 lon domain protein (Fragment) n=1 ... 156 2e-36 UniRef50_C6BWX1 Response regulator receiver protein n=1 Tax=Desu... 155 3e-36 UniRef50_C4JRY8 ATP-dependent protease La n=1 Tax=Uncinocarpus r... 155 3e-36 UniRef50_C6XS66 ATP-dependent protease La n=31 Tax=Bacteroidetes... 155 4e-36 UniRef50_C9KM28 ATP-dependent protease, Lon family n=3 Tax=Clost... 155 4e-36 UniRef50_O31147 ATP-dependent protease La n=52 Tax=Bacteria RepI... 154 6e-36 UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=C... 154 8e-36 UniRef50_D1Z1M4 Putative uncharacterized protein n=1 Tax=Methano... 153 9e-36 UniRef50_C2KUM8 ATP-dependent protease La n=4 Tax=Firmicutes Rep... 153 1e-35 UniRef50_A6TM65 Sporulation protease LonB n=3 Tax=Clostridiaceae... 153 1e-35 UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=C... 153 2e-35 UniRef50_D2EGM1 Putative circadian clock protein, KaiC n=1 Tax=C... 153 2e-35 UniRef50_B2TFQ5 ATP-dependent protease La n=11 Tax=Proteobacteri... 152 2e-35 UniRef50_B9L069 ATP-dependent protease La n=1 Tax=Thermomicrobiu... 151 3e-35 UniRef50_Q9ZJL3 ATP-dependent protease La n=17 Tax=Campylobacter... 151 3e-35 UniRef50_Q550C8 Peptidase S16, Lon protease family protein n=1 T... 151 4e-35 UniRef50_B3QSJ7 ATP-dependent protease La n=1 Tax=Chloroherpeton... 151 4e-35 UniRef50_C1VBQ7 RecA-superfamily ATPase possibly involved in sig... 151 5e-35 UniRef50_A8NIR1 Lon protease homolog n=4 Tax=Agaricomycetes RepI... 151 5e-35 UniRef50_C8W5T4 Sigma 54 interacting domain protein n=10 Tax=Fir... 151 5e-35 UniRef50_Q0W7M8 Putative uncharacterized protein n=1 Tax=uncultu... 151 5e-35 UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanoco... 151 5e-35 UniRef50_A9W785 Non-specific serine/threonine protein kinase n=1... 151 6e-35 UniRef50_A8I6M1 Predicted protein n=1 Tax=Chlamydomonas reinhard... 150 7e-35 UniRef50_D2LZH6 Putative circadian clock protein, KaiC n=1 Tax=B... 150 8e-35 UniRef50_B7PSX0 Lon protease homolog n=1 Tax=Ixodes scapularis R... 150 8e-35 Sequences not found previously or not previously below threshold: >UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organisms RepID=RADA_SALTY Length = 460 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 450/460 (97%), Positives = 456/460 (99%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP VARNERLSGYAGSAGV Sbjct: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGV 60 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA Sbjct: 61 SKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +QMKTLYVTGEESLQQVAMRAHRLGLPT NLNMLSETSIEQICLIAEEEQPKLMVIDSIQ Sbjct: 121 EQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 VMHMAD+QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS Sbjct: 181 VMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV Sbjct: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM+DQDVFV Sbjct: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFV 360 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA Sbjct: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 KHGFRRAIVPAANVPKK PEGM +FGVKKL+DALSVFDDL Sbjct: 421 KHGFRRAIVPAANVPKKPPEGMLVFGVKKLADALSVFDDL 460 >UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicutes RepID=RADA_BACSU Length = 458 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 212/457 (46%), Positives = 302/457 (66%), Gaps = 6/457 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C CG + P+W G+C C AWNT+ E + +P N R + V Sbjct: 1 MAK-TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPA---NRRAAFSHSVQTV 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++ I E PR T EF+RVLGGGVV GS +LIGG+PG GKSTLLLQ +L+ Sbjct: 57 QKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLS 116 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 LY++GEES++Q +RA RLG+ +L++LSET +E I +E P +V+DSI Sbjct: 117 GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSI 176 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ +D+ S+PGSV+QVRE A L + AKT+G+ I +VGHVTK+GS+AGP++LEH +D Sbjct: 177 QTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ FR LR+ KNRFG+ NE+G+F M E+GL EV NPS IFL ++GSS Sbjct: 237 VLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSS 296 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + EGTRP+LVEIQAL+ + NPRR+A G++ NR+++L+AVL + GL + +QD + Sbjct: 297 ITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAY 356 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 + V GGVK+ E + DLA+++++ SS RD P GEVGL GE+R V ++R+ EA Sbjct: 357 LKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEA 416 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 AK GF+R I+PAAN+ P+G+++ GV +++AL Sbjct: 417 AKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALR 453 >UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteria RepID=RADA_LISMO Length = 457 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 197/458 (43%), Positives = 292/458 (63%), Gaps = 9/458 (1%) Query: 1 MAKAPKR-AFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MAKA + FVC CG + +W G+C C+ WN + E + S + + Sbjct: 1 MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKS------RSAFNHTGE 54 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 +K ++ I+ E R T E +RVLGGGVVPGS +L+GG+PG GKSTLLLQ +L Sbjct: 55 PSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQL 114 Query: 120 A-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 K LY++GEES++Q +RA RL + DNL + +ET++E + + +P +VIDS Sbjct: 115 TLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFVKPDFVVIDS 174 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ +DV S+ GSV+QVRE A L R AK + +AI +VGHVTK+G++AGP++LEH +D Sbjct: 175 IQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVD 234 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +G+ +R LR+ KNRFG+ NE+G+F M + GL EV+NPS +FL E SGS Sbjct: 235 TVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V+ EGTRP+LVEIQALV +M N +R+A G++ N++++++AVL + GL + +QD Sbjct: 295 TVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDA 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++ GGVK+ E + DLA+ +++ SS RD+P GE+GL GEIR V ++R+ E Sbjct: 355 YLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQE 414 Query: 419 AAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 AAK GF+R +P N K P+ +Q+ GV+ + +AL Sbjct: 415 AAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALK 452 >UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteria RepID=RADA_BACHD Length = 457 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 209/458 (45%), Positives = 305/458 (66%), Gaps = 7/458 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG + +W G+C C +WN++ E +R+ SG AG+ Sbjct: 1 MAKK-KTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSG----AGI 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 AK Q ++ + E+ PR T KE +RVLGGG+VPGS +L+GG+PG GKSTLLLQ +LA Sbjct: 56 AKPQPITKVEREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLA 115 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + + LY++GEES++Q +R+ RLG+ +D+L +L+ET +E+I E P L++IDSI Sbjct: 116 DLKQRVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIGEVDPTLVIIDSI 175 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ ++ S+PGSVAQVRE A R AKT GVAI +VGHVTK G++AGPK+LEH +D Sbjct: 176 QTVYQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDS 235 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ +R LR+ KNRFG+ NE+G+F M E GL EV+NPS IFL +GS+ Sbjct: 236 VLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGST 295 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+ EGTRP+LVE+QAL+ + NPRR+A G++ NR+++L+AVL + G+ + +QD + Sbjct: 296 VVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAY 355 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VNV GGV++ E + DL + +++ SS R++ VV GE+GL GE+R V +R++EA Sbjct: 356 VNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTGEVRRVSRIDQRVNEA 415 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALSV 456 AK GF+R I+P N+ P +++ GV + DAL V Sbjct: 416 AKLGFKRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEV 453 >UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=B1YGS3_EXIS2 Length = 461 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 215/454 (47%), Positives = 301/454 (66%), Gaps = 5/454 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K FVC CG + P+W G+CS C WNT+ E + + + K Sbjct: 6 KIKTKFVCQSCGTESPKWMGRCSGCGEWNTMVEEVVEEKKA---RRGSAFVHTTTKQLKP 62 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 ++LS+I +E R TG EFDRVLGGG+VPGS +L+GG+PG GKST+LLQT +LA + Sbjct: 63 ERLSNILSQEESRVFTGSGEFDRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSARLAARG 122 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 K LY++GEESL+Q +RA RLGLPT +L +LSET + I + +EE P ++IDSIQ + Sbjct: 123 EKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIERVVDEENPAFLIIDSIQTV 182 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ ++QS+PGSV QVRE A L + AK+RG+AI +VGHVTK GS+AGP++LEH +D + Sbjct: 183 YIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVDAVLY 242 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +G+ FR LR+ KNRFG+ NE+G+F M E GL EV NPS IFL SGS+++ Sbjct: 243 FEGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERTSGVSGSTIVA 302 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTR +LVE+QAL+ + NPRR+A G++QN++A+L+AVL + GL + QD ++ Sbjct: 303 SMEGTRTVLVELQALISPTSFGNPRRMATGIDQNKVALLMAVLEKRSGLLLQTQDAYLKA 362 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGVK+ E + DLA+ +A+ SS RD+P VV GEVGL GE+R V ++R++EAAK Sbjct: 363 AGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLTGEVRRVSRIEQRVAEAAKL 422 Query: 423 GFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 GF RAI+P N+ P G+ + GV+ + +AL Sbjct: 423 GFTRAIIPKNNLGGWTYPPGITVIGVESVDEALR 456 >UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae RepID=D2RJM6_ACIFE Length = 457 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 7/457 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + +VC CG P+W G+C C W+T+ E A +P R Y Sbjct: 1 MAK-TQTHYVCQNCGYSTPKWLGKCPECGRWDTLVEETAAPAPSRQR----PSYLAVTEA 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT-LCKL 119 + L + ++ R +TG EFDRVLGGG+VPGS IL+GG PG GKST+ L + Sbjct: 56 PTPKTLKQVDRVKVQRMTTGIHEFDRVLGGGIVPGSLILLGGAPGIGKSTITLDVSMKAA 115 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 A+ + LYV+GEES Q AMRA RLG TD L +++ T + I + A + +P+L+VIDSI Sbjct: 116 ARGARVLYVSGEESEAQTAMRAERLGQATDALQIMTATELGTILVQARQVKPRLLVIDSI 175 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q M+ +++S+ GSV QVRE A L FAK G+AI+++GHVTK+G++AGP++LEH +D Sbjct: 176 QTMYNQELESAAGSVGQVRECTAKLLTFAKETGIAIIIIGHVTKEGNIAGPRLLEHMVDV 235 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD +R LR+ KNRFG+ +E G+F+M E+GLREV+NPS +FL +E SGS Sbjct: 236 VLQFEGDRSYTYRVLRALKNRFGSTSECGIFSMEEEGLREVANPSGLFLEAREEAVSGSV 295 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + EG RP+L EIQALV H+ PRR VG++ NR+ +LLAVL + G+ DQD + Sbjct: 296 ITAAMEGNRPILTEIQALVSHTPFGLPRRTVVGVDFNRVNMLLAVLEKRCGMNFGDQDAY 355 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 V VGG+KV E +ADLA+L A+VSS R+RP+P ++ GEVGL GE+R V RI EA Sbjct: 356 VCAVGGMKVKEPAADLAILGALVSSYRNRPVPMGVLAMGEVGLTGELRRVGLTDRRIKEA 415 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALS 455 A+ GF+R IVP + P+ K P+G+ + + + +A++ Sbjct: 416 AQLGFKRFIVPKGSFPQGKEPKGVTVIQARTVEEAIA 452 >UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34D2F Length = 485 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 205/485 (42%), Positives = 293/485 (60%), Gaps = 28/485 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLA-------------------- 40 MAKA AF C+ECG + +W GQC AC AWNT+ E +A Sbjct: 1 MAKARATAFFCSECGYESAKWMGQCPACRAWNTMVEEPVAFQTAKSAGKRGLGAAAGILG 60 Query: 41 ------ASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP 94 + A L+G A G + LS+I L R TGF E +RVLGGG+V Sbjct: 61 REGISASGKSPAGRSGLAGTASGLGAVCPKSLSEIELGREERTDTGFGELNRVLGGGIVK 120 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQM-KTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 GS +L+GG+PG GKSTLLLQ LA K LY++GEESL+Q+ +RA R+G +D+L Sbjct: 121 GSLVLVGGDPGIGKSTLLLQVCRNLAAGGQKVLYISGEESLKQIKIRASRIGEMSDSLCF 180 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 L ET++E I + P ++IDSIQ M++ ++ S+PGSV+QVRE L + AK G+ Sbjct: 181 LCETNLEMIQEVVRRTAPDTVIIDSIQTMYLEEITSAPGSVSQVRECTNVLMQIAKGLGI 240 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 + +VGHVTK+G +AGP+VLEH +D + +GD + +R LR KNRFG+ NE+GVF M Sbjct: 241 TVFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMR 300 Query: 274 EQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL 333 E+GL EV NPS L SG+ + EGTRPL++E+QALV S PRR A G Sbjct: 301 EEGLVEVKNPSEFMLEGRPAGASGAVAACLVEGTRPLMLEVQALVTRSNFGMPRRTAAGT 360 Query: 334 EQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD 393 + NR+ +L+AVL + + D +VN+ GG+K+ E + DLA+++A++SS +DR + + Sbjct: 361 DYNRVNLLMAVLEKRCRYDLGQMDAYVNIAGGLKMNEPALDLAIVMALISSYKDRAVDEK 420 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSD 452 VVFGEVGL+GE+R V ++R++EA K GF I+P + K K +++ GV + + Sbjct: 421 TVVFGEVGLSGEVRSVSMAEQRVNEAVKLGFEACILPRICLEKMKRRSDIRLIGVSSVKE 480 Query: 453 ALSVF 457 A+++ Sbjct: 481 AVAIL 485 >UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=B0K5E6_THEPX Length = 457 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 184/460 (40%), Positives = 285/460 (61%), Gaps = 11/460 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ FVC ECG + +W G+C C +WN+ E + +S + + Sbjct: 1 MAKST-TKFVCRECGFESSKWMGRCPNCDSWNSFEEEAIESSK---------NFRKTKDR 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +++ L D++ E R TG +EFDRVLGGG+V GS +LIGG+PG GKSTLLLQ ++ Sbjct: 51 SQIYLLEDVTFSEEERIRTGIEEFDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVAGNIS 110 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LYV+GEES+QQ+ +RA R+ + +L ET+IE+I +E +P ++IDSIQ Sbjct: 111 DSRKVLYVSGEESVQQIKLRADRILKEKQRIYLLCETNIEEIERKIDENKPDFVIIDSIQ 170 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ + ++ PGSV+Q+R+ L AK + ++I ++GHVTK+G++AGPKVLEH +D Sbjct: 171 TIYTEESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVTKEGAIAGPKVLEHMVDTV 230 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD FR LR+ KNRFGA +E+GVF M E GL E+SNPS LS + SG++V Sbjct: 231 LYFEGDRTQSFRILRAVKNRFGATHEIGVFDMEEDGLCEISNPSEFILSNKPKDVSGTAV 290 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + +GTRP+L+E+Q+L+ + PRR+A G + NR +LLAV+ + G+ ++ D +V Sbjct: 291 VSSIQGTRPILMEVQSLICKTTFGVPRRMATGFDYNRFILLLAVIEKRLGINLSQFDAYV 350 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NV GG+K+ E +ADL ++ + +S + P+P+D+ GEVGL GE+R V + +RI EA Sbjct: 351 NVAGGMKIQEPAADLGIIASSLSGYFNIPIPEDVCFIGEVGLTGEVRGVSNIDKRIGEAQ 410 Query: 421 KHGFRRAIVPAANVPKKAP-EGMQIFGVKKLSDALSVFDD 459 K GF + +P + +++ +K + D + + Sbjct: 411 KMGFSQVFIPEMKTKEIKKFGNIKVTKIKDIKDIMDFLRE 450 >UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZI7_UNCTG Length = 455 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 201/458 (43%), Positives = 291/458 (63%), Gaps = 5/458 (1%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK 62 K K F+C CG + +W G+C +C AWN+ E + + ++ Sbjct: 2 KKQKTRFLCQHCGYESVQWLGKCPSCGAWNSFAEE----KFSLPVRTGSLSRQLTGFSSE 57 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ 122 V KL DIS+++ R+ T KEFD ++GGG+VPGS IL+GG PG GKSTL+L L+ + Sbjct: 58 VLKLKDISVKDFSRYQTAIKEFDNMIGGGIVPGSLILLGGAPGIGKSTLMLHISDSLSDR 117 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 LY++GEESL QV RA RL + DN+ + SET+++ I + PK +VIDSIQ Sbjct: 118 GTVLYISGEESLSQVKARAERLKVKKDNIFLASETNLKNIIDAVNKIDPKFLVIDSIQTT 177 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + D+ S+PG+V QVRETAA L R AK++ +A+ ++GHVTK+G LAGP+VLEH +D + Sbjct: 178 YHPDLSSAPGTVGQVRETAAELLRVAKSKSIAVFLLGHVTKEGDLAGPRVLEHIVDTVLY 237 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 + + +R LR++KNRFG +E+G+F M GL EVSNPS IFL +G++V V Sbjct: 238 FENERRQTYRILRAYKNRFGPTSEIGIFEMDSSGLSEVSNPSLIFLGERVAEAAGNTVTV 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTRP+L+E+QAL + PRR+ G + NR+ IL+AVL + L + QDVF+N+ Sbjct: 298 AMEGTRPILLEVQALTARTTFGIPRRMVSGYDANRITILIAVLEKRLNLPLEMQDVFINI 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGVK+ ETSADLA+ A++S+ P+D++VFGEVGLAGE+R V ER+SEA K Sbjct: 358 AGGVKIKETSADLAVACAIMSANSGFICPKDIIVFGEVGLAGEVRSVTFTAERLSEAEKL 417 Query: 423 GFRRAIVPAANVPKKAPEG-MQIFGVKKLSDALSVFDD 459 GF++AI+P +N+ + +G + + G + L A+ + Sbjct: 418 GFKKAIIPKSNLKNLSYKGKIDVLGTETLRSAVKFLRN 455 >UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobacteria RepID=B0RY20_XANCB Length = 463 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 276/460 (60%), Positives = 344/460 (74%), Gaps = 6/460 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAA----SPMVARNERLSGYAG 56 MAKA K A+VC ECGA+Y +WQGQC+ C WNT++E+ L + R SG+AG Sbjct: 1 MAKA-KTAYVCGECGAEYTKWQGQCTECGVWNTLSEIVLESATPAGKASPAASRRSGWAG 59 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 K+ L D+ E R STG EFDRVLGGG+V G+ +LIGG+PG GKSTLLLQ L Sbjct: 60 KTEAPKITALKDVQQSEQARVSTGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQAL 119 Query: 117 CKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 +A + LYVTGEESL QVA RA RL LP + LN L+ET IE I A +PKL+V Sbjct: 120 ASMASTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAETGIENILQHASVARPKLIVA 179 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DS+Q + + ++PGSV+QVRE+AA L R+AK G A+ +VGHVTK+G +AGP+VLEH Sbjct: 180 DSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHM 239 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +G++ SRFR LR+ KNRFGAVNELGVFAM E+GL+EVSNPSAIFLS G Sbjct: 240 VDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTHQP 299 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS VMV EGTRPL+VE+QALVD S ++NPRRVAVGLEQNRLA+LLAVLHRHGG+ + DQ Sbjct: 300 GSCVMVTREGTRPLMVEVQALVDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQ 359 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DVFVNVVGG++V ET+ADL +LLA++SSLRDRPL + + FGEVGL+GEIRPVP+G++R+ Sbjct: 360 DVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGEVGLSGEIRPVPNGEDRL 419 Query: 417 SEAAKHGFRRAIVPAANVPKK-APEGMQIFGVKKLSDALS 455 EAA HGF+RAIVP AN PK + +GM+I V++LS AL Sbjct: 420 KEAATHGFKRAIVPKANAPKASSIKGMEIVAVERLSQALE 459 >UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquificales RepID=RADA_AQUAE Length = 444 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 194/455 (42%), Positives = 285/455 (62%), Gaps = 13/455 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K A+VC ECG +W G+C +C WNT+ E S + + + V Sbjct: 3 KNKTAYVCQECGYKSVKWLGKCPSCGEWNTLVEEFEPQSFSLVK----------KEPSLV 52 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 ++D EE R +TGF+ D LGGG+V G ILI G PG GKSTLLLQ ++A Sbjct: 53 LPVTDWEKEEHERETTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVANGK 112 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 K LYV+GEES Q+A+RA RLG+ +NL + E ++E+I E+E+P L+V+DS+Q + Sbjct: 113 KVLYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPSLLVLDSVQTIF 172 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 ++SS GSV+QVRE +T F K + V +VG +TK+GS+AGPKVLEH +D + Sbjct: 173 SERLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPKVLEHIVDTVLQF 232 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +G+ + +R ++ KNRFG+ E+ VF MT++GL EV PSA F+S GS V Sbjct: 233 EGERFNFYRIVKVIKNRFGSTGEIAVFKMTDKGLEEVPEPSAFFISEK-ANAPGSVVFPH 291 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EG++P+L+E+QALV ++ P+R G + NRLA++LAVL + + DQDVFVNV Sbjct: 292 TEGSKPVLLEVQALVIPALYTTPQRRTQGFDPNRLALILAVLEKEAKIFTRDQDVFVNVA 351 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG+ V E +ADLA+ +A+VSS +++ +P+D V+FGEVGL+GEIR V G R+ EA + G Sbjct: 352 GGMSVKEPAADLAVAMAVVSSKKEKEVPKDFVIFGEVGLSGEIRAVHFGDLRLKEAKRFG 411 Query: 424 FRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 F++A++P + + +GM+I+ V + +A+ V Sbjct: 412 FKKALIPKS--LEIEIDGMEIYPVSHIQEAIEVLF 444 >UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae RepID=A8MLV2_ALKOO Length = 456 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 205/459 (44%), Positives = 288/459 (62%), Gaps = 9/459 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K FVC ECG + +W G+C C+ WNT+ E L + R+ + Sbjct: 1 MAK-IKSKFVCQECGYESVKWLGKCPGCNNWNTMEEEMLESKKDFKRSPTIVS------Q 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +K Q + ++ R+ T E +RVLGGG+V GS LI G PG GKSTL+LQ +A Sbjct: 54 SKPQPIKEVKSGAYERYDTQINELNRVLGGGLVKGSLTLITGEPGIGKSTLILQASSTIA 113 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + KTLYV+GEES +Q+ MR RL +D+L ++SET+++ I EE P ++IDSI Sbjct: 114 NRYGKTLYVSGEESEEQIKMRGERLNSLSDDLYIVSETNVDVIEKYIEEYAPVFIIIDSI 173 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + D+ S+PGSV+QV+E A L R K++ + + +V HVTK G LAGP+VLEH +D Sbjct: 174 QTLFKEDLSSAPGSVSQVKECANNLMRIGKSKNIPMFIVAHVTKQGELAGPRVLEHMVDT 233 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ FR LR+ KNRFG +E+GVF M E+GL EVSNPSA+FL G+ Sbjct: 234 VLHFEGERTQEFRILRALKNRFGTTSEIGVFEMREEGLVEVSNPSAMFLESLSTEAEGAI 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+V EGTRPLLVEIQALV + PRR AVG++ NRL +++AVL + GL + +QD++ Sbjct: 294 VVVTVEGTRPLLVEIQALVAPTNAGFPRRAAVGIDINRLNLIIAVLEKKIGLPLMNQDIY 353 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPL-PQDLVVFGEVGLAGEIRPVPSGQERISE 418 VNVVGG+K+ TSADL + +A+ SS+R P+ + +VV GE+ L GE+RP+ ++ + E Sbjct: 354 VNVVGGLKLEGTSADLGVAMAIYSSMRGIPIASRAMVVMGEISLTGELRPISHLEKMLKE 413 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A K GF R+++P N K M+ GV L DAL + Sbjct: 414 AEKMGFTRSVIPQKNKFKFDGIHMKCKGVDTLKDALEML 452 >UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B3QT35_CHLT3 Length = 459 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 195/461 (42%), Positives = 285/461 (61%), Gaps = 8/461 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K +VC+ CGA ++QG+C C +W T+TE + +P + +++ Sbjct: 1 MAKA-KTRYVCSNCGAVSIKYQGKCFECGSWGTLTEESVEPAPTFS--QKIHSKHSPNVR 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++ S++ E R ST +E DRVLGGG++ S +L+GG PG GKSTL+LQ L Sbjct: 58 VKPKRFSELEDIEEERLSTRIEELDRVLGGGLMTASVVLVGGEPGIGKSTLMLQLAANLV 117 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 LY++ EESL Q+ RA+R+ + ++++ ++SET +E I E+P ++++DSIQ Sbjct: 118 -GKSILYISAEESLHQIRNRAYRMNIRSEDILLVSETQLENILDTVAAEKPDVLIVDSIQ 176 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + +SSPG+V QVRE + L AK G+ + ++GH+TK+G++AGPKVLEH +D Sbjct: 177 TIFSIGFESSPGTVTQVRECTSKLMHLAKREGITVFIIGHITKEGTIAGPKVLEHIVDTV 236 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD R+R LR+ KNRFG+ NE+GVF MTE GL EV+NPS FL+ SGS V Sbjct: 237 LQFEGDNHYRYRILRALKNRFGSTNEIGVFEMTEMGLSEVTNPSEAFLAERSFGVSGSCV 296 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG RPLLVEIQALV + P+R++ G +Q RL++LLAVL + GL M QDVF+ Sbjct: 297 CASLEGARPLLVEIQALVSKTNYTVPQRISSGFDQRRLSLLLAVLEKRIGLSMWSQDVFL 356 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N GG+++ E + +LA+ +A+ S +RD P V GE+GLAGE+R V + RI EA Sbjct: 357 NAAGGLRLLEPAVELAVCVAIASGMRDIPADSATVAIGEIGLAGELRAVSHIERRIIEAE 416 Query: 421 KHGFRRAIVPAANVPK----KAPEGMQIFGVKKLSDALSVF 457 K GF R I+P +N + + ++I L+ AL F Sbjct: 417 KLGFERVILPKSNRENLKASRVNKQIEIVFSPTLNHALDAF 457 >UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QF93_9SPHI Length = 461 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 282/459 (61%), Gaps = 6/459 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASP--MVARNERLSGYAGSA 58 MAK K F C CG +W G+C AC WNTI E + SG G Sbjct: 1 MAK-LKTTFFCQSCGNQSAKWMGRCPACGEWNTIVEEVVQKDEPEKGGWRSPSSGPGGLK 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 AK + + I+ EE PR +T E +RVLGGG+V GS +LIGG PG GKSTLLLQ Sbjct: 60 IAAKPKAIHAINYEEQPRVTTTDGELNRVLGGGIVAGSLVLIGGEPGIGKSTLLLQIALS 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 LA ++ LYV+GEES QQ+ MRA RL PT + ++++ETS + I + E +P++++IDS Sbjct: 120 LA-GLRVLYVSGEESEQQIKMRAERLDAPTSDCHVMTETSTQNIFRVVEHFEPEVLIIDS 178 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ M + V+S GSV+QVRE A ++AK GV + M+GH+TK+GSLAGPKVLEH +D Sbjct: 179 IQTMQSSLVESGAGSVSQVRECTAEFMKYAKESGVPVFMIGHITKEGSLAGPKVLEHMVD 238 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +GD + +R LR+ KNRFG+ +ELG++ M GLR+V+NPS I +S+ DE SG Sbjct: 239 TVLTFEGDRHTTYRILRTTKNRFGSTDELGIYEMLGSGLRQVTNPSEILISQRDEALSGV 298 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ + EG RPL++E QALV + P+R + G + RL +LLAVL + GG ++ QDV Sbjct: 299 TIGSMLEGNRPLMIESQALVSVATYGTPQRSSTGFDAKRLNMLLAVLEKRGGFRLGQQDV 358 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 F+N+ GG++V + + DLA+ A+VSS D +P + E+GL GE+R V + RI+E Sbjct: 359 FLNIAGGLRVEDPAIDLAVCAAIVSSYEDIAIPPSVAFAAEIGLGGEVRAVSRIESRIAE 418 Query: 419 AAKHGFRRAIVPAANVPKKAPE--GMQIFGVKKLSDALS 455 A K GF++ + N+ + + I V +L + Sbjct: 419 AEKLGFKKMFISKYNLKGLDTKSYKIDINPVSRLDEVFQ 457 >UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria RepID=Q13X95_BURXL Length = 458 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 260/465 (55%), Positives = 338/465 (72%), Gaps = 13/465 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK ++C+ECG P+W GQC +C+AWNT+ E A + A Sbjct: 1 MAK-PKTVYICSECGGQSPKWAGQCPSCNAWNTLVESVAEAPS-------THRFQSLAKS 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A V++L+DI ++PRF+TG EFDRVLGGG+VPG +LIGG+PG GKSTLLLQ+L ++A Sbjct: 53 APVRRLADIEASDVPRFTTGVSEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIA 112 Query: 121 QQMKTLYVTGEESLQQVAMRAHRL-----GLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 + LY++GEES Q+A+RA RL G L +L+E +E+I E++P + V Sbjct: 113 ADKRALYISGEESAAQIALRAQRLSLLEPGSRASELQLLAEIQLEKIQATIAEQRPDVAV 172 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 IDSIQ ++ + S+PGSVAQVRE AA LTR AK G I+MVGHVTK+G+LAGP+VLEH Sbjct: 173 IDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEH 232 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +GD S +R +R+ KNRFGAVNELGVFAMTE+GLR V+NPSA+FLS+ ++ Sbjct: 233 IVDTVLYFEGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSV 292 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 +GS V+V EGTRPLLVE+QALVD + NPRR+AVGLEQNRLA+LLAVLHRH G+ D Sbjct: 293 AGSCVLVTQEGTRPLLVEVQALVDAANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFD 352 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 QDVF+N VGGVK+TE +ADLA+LLA+ SS+R++PLP+ LVVFGEVGLAGEIRP P GQER Sbjct: 353 QDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQER 412 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 + EAAK GF A++P AN PK+ EG+Q+ V+++ A+ L Sbjct: 413 LKEAAKLGFSVAVIPRANAPKQPIEGLQVVAVERIEQAIDRVRTL 457 >UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4A3_NATTJ Length = 456 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 199/458 (43%), Positives = 290/458 (63%), Gaps = 4/458 (0%) Query: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK 62 K ++C +CG +W G+C AC WNT + P +++ G + S ++ Sbjct: 2 KKSTIYYMCLDCGHTELKWLGKCPACSNWNTF--QKKYQQPSDNKHKSNIGSSESEQSSQ 59 Query: 63 VQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQ 121 V LS+I LE+ PR ST E DRVLGGG+VPGS +L GG+PG GKSTL+LQ L Sbjct: 60 VITLSEIDLEKEPRMSTSIDELDRVLGGGIVPGSVVLFGGDPGIGKSTLMLQASHNLDTL 119 Query: 122 QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 TLYV+GEESL Q+ +R RLGL +++L S T + ++ E++P++++IDSIQ Sbjct: 120 NFSTLYVSGEESLSQLKLRCERLGLNSESLLFASITDLRELENRLNEQKPQILIIDSIQS 179 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 ++ ++++ PGS++QV+ AA L AK +A ++VGHVTK G +AGPKVLEH +D + Sbjct: 180 LYTPEIEAPPGSLSQVKHCAAVLHSVAKENEIACLIVGHVTKAGQIAGPKVLEHIVDTVL 239 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 +GD +R LRS KNRFG + E+GVF M + GL+E++NPS +FL + + T GS+++ Sbjct: 240 YFEGDHHQDYRILRSIKNRFGPI-EIGVFEMRQTGLQEITNPSKLFLRKRPDYTVGSAIL 298 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 EGTR LVEIQALV S + PRRV G++ NR A++ AVL + GL + D+F+N Sbjct: 299 PSLEGTRAFLVEIQALVSTSQLGTPRRVVTGIDSNRAALITAVLEKKSGLHLVGDDIFIN 358 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 VVGG KV E +ADLA+ L+++SS +++ P DLVV GE+GL GEIR ++R+ EA + Sbjct: 359 VVGGAKVAEPAADLAVALSLISSFKEQGFPGDLVVMGEIGLTGEIRSCNQPEKRLLEAER 418 Query: 422 HGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 GF++AI+P A ++I+ V L D L + Sbjct: 419 MGFKKAILPEACRLNHHQGNIEIYPVSYLKDVLEILSG 456 >UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocaceae RepID=UPI0001C1683A Length = 522 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 200/503 (39%), Positives = 292/503 (58%), Gaps = 52/503 (10%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK F+C+ CG+++ +W G+CS C ++++ E + + + + Sbjct: 1 MAK-PKTIFICSNCGSEFSQWFGKCSNCDTYDSLVEQNANSFGVGGWHSAQPSAKSTKPS 59 Query: 61 AKVQKLS--DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 L+ IS ++ R+ +G+ E DRVLGGGVVPGS +LIGG+PG GKSTLLLQ + Sbjct: 60 KPRASLTFDQISDRQIARWESGYSELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNE 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLP------------------------------- 147 L+Q+ + LYVTGEES QQV +RA RLG+ Sbjct: 120 LSQRYRILYVTGEESGQQVKLRASRLGMSKPLQVVSMEDSNTSSESSHPLPETDPGNNVG 179 Query: 148 ----------------TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSP 191 + +L +L ET +E+I + +P L VIDSIQ + + S+P Sbjct: 180 DAVEDNHRVTVEHHTISSDLYVLPETDLEEILREIDSLKPNLAVIDSIQTVFFPALTSAP 239 Query: 192 GSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRF 251 GSVAQVRE A L + AK + +++VGHVTK+G++AGP+VLEH +D + +GD + Sbjct: 240 GSVAQVRECTAALMKVAKHEDITMLIVGHVTKEGTIAGPRVLEHLVDTVLYFEGDRFASH 299 Query: 252 RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLL 311 R LR+ KNRFGA +E+G+F M GLREV NPS +FL DE + G++++V EGTRP++ Sbjct: 300 RLLRTVKNRFGATHEIGIFEMVSNGLREVPNPSELFLGNRDEPSPGTAIVVACEGTRPIV 359 Query: 312 VEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTET 371 VE+QALV + +PRR G++ NRL +LAVL + G+ M+ D +V GG+ V E Sbjct: 360 VELQALVSPTSYPSPRRAGTGVDFNRLVQILAVLEKRVGVPMSKLDSYVASAGGLSVEEP 419 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 + DL + +A+V+S RDR + V+ GEVGL G++R V + R+ EAAK GF+RAI+P Sbjct: 420 AVDLGIAVAIVASFRDRIVDPQTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIIPK 479 Query: 432 ANVPKKAPEGMQIFGVKKLSDAL 454 ++I V K+ DA+ Sbjct: 480 GQKFPDLK--IEILEVSKVIDAI 500 >UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri DSM 18205 RepID=D1P982_9BACT Length = 494 Score = 506 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 206/496 (41%), Positives = 292/496 (58%), Gaps = 39/496 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLS-------- 52 MAK K AFVC+ CG + +W G+C +C WNT E+R+AA + Sbjct: 1 MAK-DKIAFVCSNCGQESAKWMGKCPSCGQWNTFKEIRIAADSGSQAAKNAVMTMRHGGA 59 Query: 53 ----GYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGK 108 G S A KL DIS + PR +E +RVLGGG+VPGS L+GG PG GK Sbjct: 60 ATMFGGQHSEHDAAPMKLRDISAIDEPRIDMRDEELNRVLGGGMVPGSITLLGGEPGIGK 119 Query: 109 STLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGL---------------------- 146 STL LQT+ + + LYV+GEES Q+ +RA RL Sbjct: 120 STLTLQTILNMT-DRRILYVSGEESAHQIKLRADRLAKGQAMLREGSSADTLKTASLSSE 178 Query: 147 -PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 D++ +L ET +E+I +E P+L+VIDSIQ + +V SSPGSV+QVRE AA L Sbjct: 179 GAFDHITVLCETQLEKIFSHIQEVAPQLIVIDSIQTIAAEEVDSSPGSVSQVRECAASLL 238 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 RFAKT G+ ++++GH+ K+G+LAGPK+LEH +D + +GD +R LRS KNRFG+ + Sbjct: 239 RFAKTSGIPVILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTS 298 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMAN 325 ELG++ M + GLR+VSNPS + L+ + SG ++ EG RP LVE QALV + Sbjct: 299 ELGIYEMMQGGLRQVSNPSELLLTEDHDGLSGVAISAAIEGVRPFLVETQALVSTAAYGT 358 Query: 326 PRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSL 385 P+R A G +Q RL +LLAVL + G ++ +DVF+N+ GG++VT+ + DL++L A++SS Sbjct: 359 PQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDPAMDLSVLAAVLSSN 418 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP--KKAPEGMQ 443 D P+ Q + GEVGL+GE+RPV ++RI+EA K GF+ I+P N ++ Sbjct: 419 VDTPIEQGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFQHIIIPKYNNHGFDHKKYKIE 478 Query: 444 IFGVKKLSDALSVFDD 459 I V+K+ +A Sbjct: 479 IHPVRKVEEAFRCLFG 494 >UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE34_9FIRM Length = 456 Score = 505 bits (1302), Expect = e-142, Method: Composition-based stats. Identities = 190/456 (41%), Positives = 281/456 (61%), Gaps = 6/456 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 +VC +CG +W G+C C AW+++ E A + Y +A Sbjct: 5 KSVTKYVCQKCGYASVKWLGKCPECGAWDSLVEEVDAPV-----DRHRPSYLKTAEHVAP 59 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 + L ++ ++ R TG EFDRVLGGG+VPGS IL+GG PG GKST+ L K A + Sbjct: 60 KTLREVDKVKVNRIPTGITEFDRVLGGGIVPGSLILLGGAPGIGKSTITLDVSMKAANRG 119 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 + LYV+GEES Q AMRA RLG +D L +++ T + I + A ++ PKL+VIDSIQ M Sbjct: 120 IPVLYVSGEESEAQTAMRAERLGTASDALKVMTATELGTILVEARKDAPKLLVIDSIQTM 179 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + ++++++ GSV QVRE A L FAK +AI+++GHVTK+G++AGP++LEH +D + Sbjct: 180 YNSELETAAGSVGQVRECTAKLLNFAKESNIAIIIIGHVTKEGNIAGPRLLEHMVDVVLQ 239 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +GD +R LR+ KNRFG+ +E G+F+M +GL+EVSNPS +FL ++ GS + Sbjct: 240 FEGDRSYTYRVLRALKNRFGSTSECGIFSMEAEGLQEVSNPSGLFLETKEKPVPGSVITA 299 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EG RP+L EIQAL H+ PRR AVG++ NR+ +L+A+L + G+ DQD +V+ Sbjct: 300 TIEGNRPILAEIQALAAHTPFGMPRRTAVGVDYNRVNMLIAILEKRMGMNFGDQDAYVSA 359 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 VGG+K+TE + DLA++ A+VSS R+ P+ ++ GEVGL GE+R V RI EAA+ Sbjct: 360 VGGMKITEPAVDLAIVGALVSSYRNVPVGAGILCLGEVGLTGELRRVGLTDRRIKEAAQL 419 Query: 423 GFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 GF+R IVP + + + + +A+ Sbjct: 420 GFKRFIVPRGSFMNGKKAPAGVVECRTVEEAIGAMF 455 >UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=B7KLK4_CYAP7 Length = 520 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 203/491 (41%), Positives = 304/491 (61%), Gaps = 40/491 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS-PMVARNERLSGYAGSAG 59 MAK+ K ++CN CG++ P+W G+C +C + ++ E ++ + P++AR S + Sbjct: 1 MAKS-KTIYICNACGSESPQWFGKCPSCGVYGSLEEQIISQNNPLIARGGWQSNSRQNGK 59 Query: 60 VAKV------QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 + + S I+ EE RF++G+ E DRVLGGG+VPGS +LIGG+PG GKSTLLL Sbjct: 60 ASGPAQPRISLRFSQITQEEQARFASGYGELDRVLGGGIVPGSLVLIGGDPGIGKSTLLL 119 Query: 114 QTLCKLAQQMK-TLYVTGEESLQQVAMRAHRLGL-------------------------- 146 Q +L+Q++ LYV+ EES QQV +RA RLG+ Sbjct: 120 QVANRLSQRLPRILYVSAEESGQQVKLRAQRLGVGVVETPPEESENGKGKKRNKSTQKDL 179 Query: 147 --PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 +NL +L ET +E+I E +P+ VIDSIQ ++ A + S+PGSVAQVRE + L Sbjct: 180 NNADNNLYVLPETDLEEILRELESLKPQAAVIDSIQTLYFAALTSAPGSVAQVRECTSAL 239 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAV 264 + AK + + +VGHVTK+G++AGP+VLEH +D + +GD + R LRS KNRFGA Sbjct: 240 MQVAKRENITLFIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGAT 299 Query: 265 NELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMA 324 +E+G+F M ++GL EV NPS +FL DE+ G++ +V EGTRP++VE+QALV + + Sbjct: 300 HEIGIFEMVDKGLVEVENPSELFLGNRDELIPGTATIVACEGTRPIVVELQALVSPTSYS 359 Query: 325 NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSS 384 +PRR G++ NRL +LAVL + G+ ++ D +V GG+ V E +ADL + +A+V+S Sbjct: 360 SPRRSTTGVDYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLGMAIAVVAS 419 Query: 385 LRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA-NVPKKAPEGMQ 443 RDR + ++ GEVGL G++R V + R+ EA K GF+RAIVP + P+ G++ Sbjct: 420 FRDRVVDPRTILIGEVGLGGQVRLVSQMELRLKEATKLGFKRAIVPKGQSYPEDI--GLE 477 Query: 444 IFGVKKLSDAL 454 + V K+ DA+ Sbjct: 478 VVAVGKVIDAI 488 >UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae RepID=C6JJB8_FUSVA Length = 463 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 175/463 (37%), Positives = 270/463 (58%), Gaps = 7/463 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K +VC+ECG +W G+C C+ W T E S S + Sbjct: 1 MAK-NKSFYVCSECGYKSSKWLGKCPQCNEWGTFEEEIEIIS--AGAPVVSSVISVKETA 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 KV SDI +E++ R+ TG +EFDRVLGGG++ G +L+ GNPG GKSTLLLQ + Sbjct: 58 EKVYSFSDIKMEDMYRYKTGIEEFDRVLGGGLLQGEVVLVTGNPGIGKSTLLLQVADRYT 117 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +Y++GEES QV R RL + +L +++ET + I ++PK++++DSIQ Sbjct: 118 SYGTVIYISGEESPSQVKNRGERLKISAKDLFLMAETDVSNIYEYLIAKKPKVVIVDSIQ 177 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ + + S PG+ Q+RE + AK ++ +VGH+TKDG +AGPK+LEH +D Sbjct: 178 TLYNSSIDSIPGTPTQIRECTLKIIELAKKYNISFFIVGHITKDGKVAGPKMLEHMVDAV 237 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 +G+ +R LRS KNRFG+ NEL VF+M E G++E+ N S FLS DE +GS V Sbjct: 238 FNFEGEEGLFYRILRSTKNRFGSTNELAVFSMEEDGMKEIKNSSEYFLSERDEKNAGSMV 297 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + V EGT+ L+EIQ L+ S + P+R+ G ++NR+ IL A+ + + +A +D+FV Sbjct: 298 VPVLEGTKVFLLEIQTLLTESNIGIPKRIVQGFDRNRIQILTAIAEKKMHMSLAMKDMFV 357 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N+ GG+ + + +ADLA+L++++S R + Q + GE+GL GEIR V ++R+ E Sbjct: 358 NIPGGLSIEDPAADLAVLISLLSVYRGVEISQKIAAIGELGLRGEIRKVFFIEKRLRELE 417 Query: 421 KHGFRRAIVPAANVPK----KAPEGMQIFGVKKLSDALSVFDD 459 K GF+ +P AN + +++ +K L + L + Sbjct: 418 KLGFKGVYIPEANRKEIEKNSYKYKLKLIYLKNLEELLERMNK 460 >UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acetobutylicum RepID=Q97EC5_CLOAB Length = 450 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 190/460 (41%), Positives = 278/460 (60%), Gaps = 12/460 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+K K FVC ECG +W G+C +C++WN+ E + ++ S Sbjct: 1 MSKV-KSFFVCQECGYQSVKWLGKCPSCNSWNSFVEEERVENKKASKITLNS-------- 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + +++I + R+ T E +RVLGGG+V GS LI G PG GKSTLLLQ +A Sbjct: 52 -EPKCINNIKSGQYERYDTNNTELNRVLGGGLVKGSITLISGAPGIGKSTLLLQICQDIA 110 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LYV+GEES Q+ MR RLG+ + N+ +L+ET++E I E +P ++IDSI Sbjct: 111 LKYGKVLYVSGEESEHQIKMRGDRLGVTSANIYILAETNMESIERHVENIKPAFVIIDSI 170 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+PGSV+QVRE A + R AKT + +V HVTK G LAGP+VLEH +D Sbjct: 171 QTLYKDQITSAPGSVSQVRECANDIMRIAKTDNIPFFIVAHVTKQGELAGPRVLEHIVDT 230 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G FR LR+ KNRFG +E+GVF M E+GL ++ NPS++FL + GS Sbjct: 231 VLTFEGQRTEEFRILRTVKNRFGTTSEIGVFEMKEEGLEQIHNPSSLFLEETNFNQEGSV 290 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V+ + EGTRP+LVEIQALV + PRR +VG++ +RL ++LAVL + + + DV+ Sbjct: 291 VIGIMEGTRPILVEIQALVSKTNAVMPRRTSVGIDSSRLNLILAVLEKKLKVPFYNCDVY 350 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD-LVVFGEVGLAGEIRPVPSGQERISE 418 VNVVGG+ + T DL L LA+VSS++ + D ++V GE+GL GE+RPV ++E Sbjct: 351 VNVVGGLNIEGTYGDLGLALALVSSVKGVSIKLDKMIVVGEIGLTGEVRPVSFSDRIVNE 410 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 A K GF+ ++P N+ + I GV L +A++ Sbjct: 411 ADKLGFKNILMPQKNIKNDKNIAINIIGVSYLKEAVNKVF 450 >UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteria RepID=RADA_SYNY3 Length = 505 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 202/480 (42%), Positives = 297/480 (61%), Gaps = 26/480 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARN------ERLSGY 54 MAKA + FVC+ CGAD+ +W G+C CH + ++ E + A + + S Sbjct: 1 MAKA-RTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSRSSK 59 Query: 55 AGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 + S I E RF +G+ E DRVLGGG+VPG+ ILIGG+PG GKSTLLLQ Sbjct: 60 VKTGQPQAALTFSQIRQENQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQ 119 Query: 115 TLCKLAQQMK-TLYVTGEESLQQVAMRAHRLGLP-----------------TDNLNMLSE 156 +LA ++ LYV+ EES QQ+ +RA RLG+ NL +L E Sbjct: 120 VAFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLFVLPE 179 Query: 157 TSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIV 216 T+++ I E QP++ +IDSIQ ++ + S+PGSV+QVRE L + AK +++ Sbjct: 180 TNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLF 239 Query: 217 MVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG 276 +VGHVTK+G++AGPKVLEH +D + GD + R LRS KNRFGA E+G+F M + G Sbjct: 240 IVGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSG 299 Query: 277 LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQN 336 L+EV NPS +FL +E SG+++ V EGTRPL+VE+QALV + A+PRR G++ N Sbjct: 300 LQEVLNPSQLFLGSREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYN 359 Query: 337 RLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 RL +LAVL + G+ ++ D +++V GG++V E + DLA+ +A+V+S RDR + +++ Sbjct: 360 RLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRVVDPTMII 419 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 GE+GL G+IRPV + R+ EAAK GF++AIVP ++ G+++ V K+ A++V Sbjct: 420 LGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKGQTGIES-AGIKLIPVGKVFAAIAV 478 >UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteria RepID=RADA_STRP6 Length = 453 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 184/444 (41%), Positives = 274/444 (61%), Gaps = 8/444 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG P++ G+C C AW++ + + + + + + Sbjct: 1 MAKK-KATFICQECGYQSPKYLGRCPNCSAWSSF------VEEVEVKEVKNARVSLAGEK 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL D+ R T EF+RVLGGGVVPGS ILIGG+PG GKSTLLLQ +LA Sbjct: 54 SRPVKLKDVDNISYHRTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LYV+GEES +Q+ +R+ RLG + + +ET+++ I E +P ++IDSIQ Sbjct: 114 NKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFLIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + D+ GSV+QVRE A L + AKT +A +VGHVTK+G+LAGP++LEH +D Sbjct: 174 TIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ FR LR+ KNRFG+ NE+G+F M GL EV NPS +FL + +GS+V Sbjct: 234 LYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAV 293 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 +V EG+RP+L E+Q+LV ++ N RR GL+ NR+++++AVL + GL + +QD ++ Sbjct: 294 VVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL 353 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GGVK+ E + DLA+ +A+ SS +++P GE+GL GEIR V ++RI+EAA Sbjct: 354 KSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAA 413 Query: 421 KHGFRRAIVPAANVPK-KAPEGMQ 443 K GF + P + P+G++ Sbjct: 414 KLGFTKVYAPKNALQGIDIPQGIE 437 >UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacteria RepID=RADA_STRP3 Length = 453 Score = 499 bits (1285), Expect = e-140, Method: Composition-based stats. Identities = 182/444 (40%), Positives = 272/444 (61%), Gaps = 8/444 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K F+C ECG P++ G+C C AW++ + + + + + + Sbjct: 1 MAKK-KATFICQECGYQSPKYLGRCPNCSAWSSF------VEEVEVKEVKNARVSLAGEK 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL D+ R T EF+RVLGGGVVPGS ILIGG+PG GKSTLLLQ +LA Sbjct: 54 SRPVKLKDVDNISYHRTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + LY +GEES +Q+ +R+ RLG + + +ET+++ I E +P ++IDSIQ Sbjct: 114 NKGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFLIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + D+ GSV+QVRE A L + AKT +A +VGHVTK+G+LAGP++LEH +D Sbjct: 174 TIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ FR LR+ KNRFG+ NE+G+F M GL EV NPS +FL + +GS+V Sbjct: 234 LYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAV 293 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 +V EG+RP+L E+Q+LV ++ N RR GL+ NR+++++AVL + GL + +QD ++ Sbjct: 294 VVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL 353 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GGVK+ E + DLA+ +A+ SS +++P GE+GL GEIR V ++RI+EAA Sbjct: 354 KSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAA 413 Query: 421 KHGFRRAIVPAANVPK-KAPEGMQ 443 K GF + P + +G++ Sbjct: 414 KLGFTKVYAPKNALQGIDISQGIE 437 >UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUE9_SYNWW Length = 451 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 198/458 (43%), Positives = 293/458 (63%), Gaps = 12/458 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 FVC+ECG + P+W G+C C AWN++ E ++ P+ ER++ Sbjct: 3 KIISKFVCHECGYETPKWLGKCPGCSAWNSLLEESISNKPLRRTAERVA----------A 52 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQ 122 L+ +S E+ PRFS+G EFDRVLGGG+VPGS IL+GG+PG GKSTLLLQ A Sbjct: 53 IPLNQLSAEDSPRFSSGLSEFDRVLGGGIVPGSLILLGGDPGIGKSTLLLQVAGLIAAAG 112 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 + LY++GEESLQQ+ +RA RLG+ D + +L+E I+ + + P L++IDSIQ + Sbjct: 113 KRILYLSGEESLQQIRLRASRLGINNDTIFLLNEQDIDLLHEYINDLDPDLIIIDSIQTV 172 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + + + S PGSV+Q+RE+ A + + AK A+ +VGHVTKDGSLAGPKVLEH +D V Sbjct: 173 YSSKLSSIPGSVSQLRESTAAVMQIAKKMDKAVFLVGHVTKDGSLAGPKVLEHIVDVVVY 232 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +G+ + FR LR+ KNRFGA +E+ + M+ QGL EV +PS +FLS G +++SG++++ Sbjct: 233 FEGEKNFSFRLLRAAKNRFGATDEIALLEMSGQGLVEVPDPSYVFLSPGRDISSGTAIVA 292 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EG+RPLL+EIQALV PRR+ G++QNRL++++AVL + G ++ DV++ V Sbjct: 293 SMEGSRPLLIEIQALVSSLGAGYPRRMVSGIDQNRLSLIIAVLEKRRGYTLSACDVYLKV 352 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGV + + S DL + A++SS ++PL D V GE+ L+G+IRPV R+ E + Sbjct: 353 SGGVFLKDPSVDLGIAAAVLSSYLEKPLAMDTVFIGEISLSGQIRPVSFLDLRLREIDRM 412 Query: 423 GFRRAIVPAA-NVPKKAPEGMQIFGVKKLSDALSVFDD 459 G++R IVP + K+ M+I VK L + + + Sbjct: 413 GYKRVIVPTSPGRLAKSSHNMEILEVKSLDHFIDIVLE 450 >UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepID=C0R005_BRAHW Length = 462 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 181/459 (39%), Positives = 271/459 (59%), Gaps = 3/459 (0%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK FVC+ CG W G+C +C +WN++ S ++ R S+ Sbjct: 1 MAKKNNTIFVCDNCGESTINWMGKCPSCGSWNSLKPFTE-PSQDSNKSIRERTSTSSSDK 59 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A + L I + R ST E +RVLGGG+V GS ILIGG PG GKSTLLLQT +A Sbjct: 60 ASLTPLKKIKTNDRTRISTNIDELNRVLGGGIVQGSVILIGGEPGIGKSTLLLQTASNIA 119 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + K Y TGEESL+Q+ +RA RL L + + SE++ + I ++ P L +IDSIQ Sbjct: 120 KNEKVYYFTGEESLEQIKLRADRLTLEDSDFLISSESNCDNIINTLLDDTPSLAIIDSIQ 179 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ S GS AQ++ A L + AK + + I +VGH+TK+G++AGPK+LEH +DC Sbjct: 180 TIYSPSTNSIAGSPAQIKNCAWALMQTAKLKNITIFLVGHITKEGTIAGPKILEHIVDCV 239 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV-TSGSS 299 + +GD +R LR+ KNR+GAV+E+G+F M E+GL EV +PS +F +E +G+ Sbjct: 240 LYFEGDDKGIYRILRAVKNRYGAVDEVGIFEMAEKGLMEVKDPSRVFTRGVNETVFAGNV 299 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V V EG+R VE +ALV S PRR+ +G +Q RL I++A+L + L +++QDV+ Sbjct: 300 VTPVIEGSRVFCVEQEALVGSSAFGYPRRLTIGYDQYRLLIIIAILEKRAHLNLSNQDVY 359 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV G+ V ET++DLA+ +A+ SS+ + + GE+GL+GE+RPV + RI E Sbjct: 360 INVANGLNVKETASDLAIAMAIASSMSGISIQRTTAYIGELGLSGEVRPVRFIERRIKEM 419 Query: 420 AKHGFRRAIVPAANVPK-KAPEGMQIFGVKKLSDALSVF 457 K + + V + K P ++I G+ +S+A+ Sbjct: 420 QKFSLKEVYISKRAVKEIKNPGDIKIIGIDHISEAVKRL 458 >UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJQ7_BDEBA Length = 463 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 210/466 (45%), Positives = 291/466 (62%), Gaps = 12/466 (2%) Query: 1 MAK-APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMV---ARNERLSGYAG 56 MAK K + C CGA PRW+G+CS C AWN+ E + G Sbjct: 1 MAKSKTKTIYTCQNCGAQRPRWEGKCSDCGAWNSYVEELQMPEVKTRGWSTGSGERESTG 60 Query: 57 SAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116 S VA Q+L ++ L RF T F+E +RVLGGG+ GS +L+GG+PG GKSTLLLQ Sbjct: 61 SKPVALDQRLEEVK---LDRFDTSFEELNRVLGGGLAKGSFVLLGGSPGIGKSTLLLQMA 117 Query: 117 CKLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 LA K LY++GEES+ Q RAHRLG+ + + + E+++ + +A ++P ++V Sbjct: 118 GGLANNKHKVLYISGEESVSQTGSRAHRLGIRSPLIEVGCESNLTAVMEMARFKKPDVLV 177 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DSIQ M + D+Q++PGSV+QVRE A +L AK G+ ++++GHVTKDG++AGPKVLEH Sbjct: 178 VDSIQTMFLPDLQAAPGSVSQVRECAGHLMGLAKHDGITVILIGHVTKDGNIAGPKVLEH 237 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +DC + DGD FR LRS KNRFGA +ELGVF M +GL EVSNPS +FL + Sbjct: 238 MVDCVLSFDGDISYNFRLLRSLKNRFGAAHELGVFQMNSKGLEEVSNPSELFLEERGDQL 297 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 GS+V EGTRPLL E+QAL S MA PRR A+G++ NRL +L AVL RH +++A Sbjct: 298 IGSAVFASMEGTRPLLCEVQALTLSSPMAMPRRTALGIDINRLHLLTAVLDRHLDVRLAH 357 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+F+NVVGG+K+ E ++DLA+ A++S+ R L FGE+GL GE+R V ++R Sbjct: 358 NDIFINVVGGLKLVEPASDLAVAAAILSTEHRRDLDAKTCYFGEIGLTGEVRGVSFVEQR 417 Query: 416 ISEAAKHGFRRAIVPAANVPK----KAPEGMQIFGVKKLSDALSVF 457 I EA K GF+ ++P +N K + +I VK + D + Sbjct: 418 IKEADKLGFKHFVIPFSNKRHLEDVKLSKDKKISFVKNVHDLNKII 463 >UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y821_NITMU Length = 452 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 259/461 (56%), Positives = 329/461 (71%), Gaps = 12/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ K + C ECG +WQGQC C AWNT+ E + + + + Sbjct: 1 MAKS-KSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAM--------SEKAAARFTPVSES 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +VQ LS++ EE R+STG EFDRVLGGG+V G +L+GG+PG GKSTLLLQ LC ++ Sbjct: 52 REVQSLSEVEAEEEQRYSTGLLEFDRVLGGGLVQGGVVLLGGDPGIGKSTLLLQALCNMS 111 Query: 121 Q---QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 LYV+GEES +QVAMRA R+G+ L++L+E +E+I + E +P + VID Sbjct: 112 LLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVLAERKPDVAVID 171 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ ++ +QS+PGSVAQVRE AA LTR AK G +++VGHVTK+G+LAGP+VLEH + Sbjct: 172 SIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMV 231 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + +GD S FR +R+ KNRFGAVNELGVFAMTE+GLREVSNPSA+FLS G Sbjct: 232 DTVLYFEGDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPG 291 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S +MV EGTRPLLVEIQALVD + N RR++VGLEQNRLA+LLAVLHRH G+ DQD Sbjct: 292 SCIMVTQEGTRPLLVEIQALVDEAHSPNARRLSVGLEQNRLAMLLAVLHRHAGIACFDQD 351 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 VFVN VGGVK+TE ADLA+LLA+VSSL++RPLP+ VVFGEVGLAGE+RPV G ER+ Sbjct: 352 VFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEVRPVQRGLERLR 411 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 EAAK GF +AIVP AN PK P G++I V+++ +A++ Sbjct: 412 EAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVARMR 452 >UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C33601 Length = 484 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 194/485 (40%), Positives = 297/485 (61%), Gaps = 30/485 (6%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL--AASPMVARNERLSGYAGSA 58 MAK + +VCN CG + +W G+C +C + ++ E + +S S Y+ Sbjct: 1 MAKK-RNVYVCNICGTESVQWFGKCESCQTYGSLEEKIVVTPSSSDNILRRERSLYSNKE 59 Query: 59 GVAKVQK-------LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 ++ +I E +F +G+ E DRVLGGGVVPGS +LIGG+PG GKSTL Sbjct: 60 NNSRATPKPNISNYFDEIVDNEKMQFQSGYDELDRVLGGGVVPGSLVLIGGDPGIGKSTL 119 Query: 112 LLQTLCKLAQQMK-TLYVTGEESLQQVAMRAHRLGL----------------PTDNLNML 154 LLQ KLAQ++ LY++ EES QQ+ +RA RL + NL +L Sbjct: 120 LLQVANKLAQKLPRILYISAEESAQQIKLRASRLMMLGTEEKHIERKELERCNRKNLFIL 179 Query: 155 SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 SET++E+I E QP++ +IDSIQ ++++ + S+PGSV+QV+E + L R AK + Sbjct: 180 SETNLEEILRELESLQPQVAIIDSIQTLYLSTLNSAPGSVSQVKECTSVLMRLAKRDNIT 239 Query: 215 IVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTE 274 +++VGHVTK+G++AGP+VLEH +D + +GD + R LRS KNRFGA +E+G+F M E Sbjct: 240 LLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRVLRSVKNRFGATHEIGIFEMIE 299 Query: 275 QGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE 334 GL EV NPS +F+ +E+ G++++V EGTRPL+VE+QALV + +PRR G+ Sbjct: 300 SGLVEVKNPSELFMGNQNELVPGTAIVVACEGTRPLVVELQALVSPTSYPSPRRSTTGIA 359 Query: 335 QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 +RL +LAVL + G+ ++ DV+V+ GG+ V E +ADL + +A+ +S++D+ + + Sbjct: 360 YSRLQQILAVLEKRVGIPLSKLDVYVSSTGGLGVEEPAADLGIAIAITASVKDKVIIPNT 419 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDA 453 ++ GEVGL G++R VP + R+ EA K GF RAIVP N +++ V K++DA Sbjct: 420 ILIGEVGLGGQVRSVPQLELRLKEAVKLGFTRAIVP--NSKNYTFNVNLKVIPVGKVTDA 477 Query: 454 LSVFD 458 ++ Sbjct: 478 INAAF 482 >UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=Q31N87_SYNE7 Length = 478 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 208/469 (44%), Positives = 288/469 (61%), Gaps = 16/469 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYA----- 55 MA++ + +VC CG PR+ G+C AC +WN++ E +A + A L Sbjct: 1 MARS-RSEYVCQNCGHRAPRYVGRCPACESWNSLVEEAIAPTAKTAIATVLPSRQRRDRL 59 Query: 56 --GSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 Q LS I+ R ++G EFDRVLGGG+VPGS +LIGG+PG GKSTLLL Sbjct: 60 AEAPPQAVAAQPLSAIADVSQQRIASGSGEFDRVLGGGLVPGSLVLIGGDPGIGKSTLLL 119 Query: 114 QTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------GLPTDNLNMLSETSIEQICLIAE 167 QT L+QQ LYV EES QQV +R R+ +L E ++ I E Sbjct: 120 QTATALSQQQPILYVCAEESGQQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAELE 179 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 +P + +IDSIQ ++ + S+PGSVAQVRE A L R AK + +++VGHVTKDG++ Sbjct: 180 TLRPPVAIIDSIQALYSPALGSAPGSVAQVRECTAALMRVAKQLTITLLIVGHVTKDGAI 239 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGPKVLEH +D + +GD + R LRS KNRFGA ELG+F M ++GL EV NPSA+F Sbjct: 240 AGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGASQELGIFEMVDRGLEEVGNPSALF 299 Query: 288 LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHR 347 L D+ TSG++ +V EGTRPLLVE+QALV S ++PRR G+E NRL +LAVL + Sbjct: 300 LGSRDQATSGTATIVACEGTRPLLVELQALVSPSSYSSPRRAGTGIEYNRLLQILAVLEK 359 Query: 348 HGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR 407 GL ++ D +V GG+ V E +ADL + +A+V+S RDR L D V+ GE+GL G++R Sbjct: 360 RLGLPLSKFDAYVASAGGLNVAEPAADLGIAIALVASFRDRCLRPDTVLIGEIGLGGQVR 419 Query: 408 PVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 PV + R+ EAAK GF+RA++P ++ +++ V +L DA+ + Sbjct: 420 PVSQVELRLKEAAKLGFQRALLPKG--QERCESDLELVPVSRLVDAIGL 466 >UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriaceae RepID=C7NB45_LEPBD Length = 452 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 173/461 (37%), Positives = 280/461 (60%), Gaps = 12/461 (2%) Query: 1 MA-KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MA K K ++C+ECG +W G+C C +W T E S + Sbjct: 1 MAVKKGKTKYICSECGYSSLKWMGKCPNCDSWGTFEEEIDIKSTFKNVESQEVS------ 54 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 ++K+++I +E+ R T F+EFDRVLGGG++ G +LI G+PG GKST LLQ + Sbjct: 55 ---IKKITEIEIEKEFRMVTPFEEFDRVLGGGLIKGEVVLITGSPGIGKSTFLLQLSQEY 111 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 A+ YV+GEES +Q+ RA R+ + ++NL +L++T+IE+I + +E+PK++VIDSI Sbjct: 112 AKIGNVFYVSGEESPRQIKQRAERVNVKSENLYILNDTNIEKIESVILKEKPKVVVIDSI 171 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ +V S PGSV Q+RET + AK +A +VGHVTKDG LAGPK+LEH +D Sbjct: 172 QTLYSENVNSIPGSVTQIRETTLKIIEIAKKNEIAFYIVGHVTKDGKLAGPKLLEHMVDA 231 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + ++G+ +S FR +RS KNR+G+ NE+ +F M E G+ EV NPS F+S +E GS Sbjct: 232 VLQIEGEENSYFRIIRSIKNRYGSTNEISIFDMKENGISEVKNPSEFFISDREEKNVGSI 291 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 ++ ++EG+R L E+Q+L+ PRR G ++ R+ IL AVL R + + +D++ Sbjct: 292 IVPIFEGSRVFLFEVQSLLGTPNFGMPRRTVEGYDKTRVEILSAVLSRSLKVDVNSKDIY 351 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG+ + + S+DLA++ +++SS++ P+ Q + GE+GL GE+R V + R++E Sbjct: 352 INIPGGIDLNDRSSDLAVVFSLLSSIKGIPISQKIAAIGELGLRGEVRKVSFIKNRVTEL 411 Query: 420 AKHGFRRAIVPAANVP--KKAPEGMQIFGVKKLSDALSVFD 458 K GF +P ++ +K +++ + +S+ + Sbjct: 412 EKLGFAGVYLPKSHKADFEKEKTKIKLNYISNISELVERVK 452 >UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKY5_9FIRM Length = 466 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 178/469 (37%), Positives = 266/469 (56%), Gaps = 17/469 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M K F+C+ CGA+ P+W G+C C WN++ E + P R Sbjct: 1 MNSKTKTKFICHNCGAETPKWMGKCPNCGEWNSLEEKIEESIPKSIRTL------SFQSG 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L+DI +++ R G E DR LGGG+V S IL GG PG GKSTL+LQ Sbjct: 55 KEPTSLTDIEIKDTDRVKLGITELDRPLGGGIVSDSVILWGGEPGIGKSTLILQICDSFT 114 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + LY +GEES Q+ MRA RL + T+ + +E+++E I ++ P +++IDSI Sbjct: 115 KMGKTVLYCSGEESDIQIKMRAERLSVNTEECFVFAESNLETILAEVDKLHPDMVIIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+ GS Q+R+ A L + AK G+ ++++GHVTK+G++AGP++LEH +D Sbjct: 175 QTTYLPNSSSAMGSPTQIRDCTAILVKMAKESGIIVMIIGHVTKEGNIAGPRILEHMVDV 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 L+GD + +FR LR+ KNRFG+ +E G+F M +GL+ + +PS L E S Sbjct: 235 VFYLEGDRNYQFRVLRTVKNRFGSTSESGLFVMGRKGLKGIDDPSKYLLKGIQEAPVSGS 294 Query: 300 VMVV-WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 + EG RP+L+E+QAL HS++A PRR+A G + NRL ILLAVL + G + + DV Sbjct: 295 TVAACMEGLRPILIEVQALTVHSVLAVPRRIASGYDFNRLVILLAVLEKKGKIPFSADDV 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++NV GG K+ ET+ADL++ LA+ S D PL + + GE+GL GEI PV R+ E Sbjct: 355 YLNVAGGYKLKETAADLSVALALFSVKYDIPLKKFCMALGEIGLTGEILPVSKLSLRLKE 414 Query: 419 AAKHGFRRAIVPAAN-------VPKKAPEGM--QIFGVKKLSDALSVFD 458 A K F ++PA N E + + + L +A+ F Sbjct: 415 AVKMNFTEFVLPARNQEEAENYFKDNHREELLSHVVFINHLEEAIHFFK 463 >UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL59_9BACT Length = 445 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 191/446 (42%), Positives = 273/446 (61%), Gaps = 12/446 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K +VC CG P W G+C C++W++ E + A +R++ Sbjct: 1 MAKK-KAKYVCQSCGYVSPGWIGKCPECNSWSSFVEEIQVDAATTAIGKRIA-------K 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 AK L D+ E R TG E D+VLGGG+V GS +L+GG PG GKST++LQ L+ Sbjct: 53 AKPVSLKDVKGLETERTPTGMPELDQVLGGGLVKGSVLLVGGEPGIGKSTIMLQCAGILS 112 Query: 121 QQM-KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LYV+GEES Q+ +R+ RLG+ + +++LS S+E + EEE+P +++DSI Sbjct: 113 RDRLKVLYVSGEESAAQLRLRSDRLGVSENEIDILSTNSLEDVLQACEEEKPDYIILDSI 172 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + D+ S+ G+V QV+ L AK+RG+ +++VG VTKDG +AGPKVLEH +D Sbjct: 173 QTIASDDLNSAAGTVGQVKHVTYRLVELAKSRGITVMIVGQVTKDGYIAGPKVLEHLVDT 232 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD R LRS KNRFG NE+G+F MT++GL E+S S F+ + ++G Sbjct: 233 VLYFEGDYSRGVRILRSVKNRFGPTNEVGLFEMTDKGLLELS--SYSFVDDRADNSAGRV 290 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EGTR L+E+QALV + P+R +G + NRL +LLAVL + GG+ +A D++ Sbjct: 291 FVPVMEGTRAFLIEVQALVAPTFYQFPKRNCMGFDLNRLNMLLAVLEKKGGVNLAGSDIY 350 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV GG+K+TETSADLA+ A+VSS RDRP+ GEVGL G IRPV + R+SE+ Sbjct: 351 INVAGGMKITETSADLAICAAIVSSFRDRPIDPHSTFIGEVGLTGVIRPVSNMGSRLSES 410 Query: 420 AKHGFRRAIVPAANVPKKAPE-GMQI 444 K G R+ +P K E G+ I Sbjct: 411 YKMGIRKYYLPEKVEFDKTIEIGLSI 436 >UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae RepID=D1ALG8_SEBTE Length = 450 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 173/461 (37%), Positives = 281/461 (60%), Gaps = 13/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA K ++C+ECG +W G+C C +W T E + + + SA Sbjct: 1 MA--SKSGYICSECGYTSKKWLGKCPNCESWGTFEEEV---------DIKKTLSKISAED 49 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ KL +I L + R T F EFDRVLGGG+V G +LI GNPG GKST LLQ + + + Sbjct: 50 VEIVKLEEIELGKEFRMVTKFSEFDRVLGGGLVKGEVVLISGNPGIGKSTFLLQLIDEYS 109 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + Y++GEESL+Q+ RA RLG+ + +L + +ET++E+I I ++ PK++VIDSIQ Sbjct: 110 KTGNVFYISGEESLRQIKQRADRLGVKSKSLYLANETNLEKIESIILKDNPKIVVIDSIQ 169 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ +V S PGS+ Q+RET + AK+R ++ +VGH+TKDG +AGPK+LEH +D Sbjct: 170 TLYSENVNSIPGSMTQIRETTLKIIEMAKSREISFFIVGHITKDGKVAGPKMLEHMVDAV 229 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + ++G+ +S +R +R+ KNRFG+ NE+ +F M E G+ E++NPS F+ +E GS + Sbjct: 230 IQIEGEENSFYRIIRTLKNRFGSTNEISIFDMKEDGISEITNPSEFFIGEREEKNVGSII 289 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EG+R L E+Q+L+ ++ PRR+ G ++NR+ IL AVL + L ++ +D+F+ Sbjct: 290 TPILEGSRVFLFEVQSLLTNTTFGLPRRIIEGYDKNRVEILGAVLSKFLKLDLSSKDIFI 349 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 N+ GG+ + + S+DLA++ +++SS+ + Q + GE+GL GEIR V + RI E Sbjct: 350 NIPGGLTLKDRSSDLAVIFSLISSINALAVSQKIAAVGELGLRGEIRRVAFIKNRIKELE 409 Query: 421 KHGFRRAIVPAANVPKKAPEG--MQIFGVKKLSDALSVFDD 459 + GF+ +P AN E +++ +K + + + Sbjct: 410 RLGFKGVYLPTANKKDLESEDFKIKLIYLKNIEELIERVKK 450 >UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacterium KB13 RepID=B6BU53_9PROT Length = 454 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 219/459 (47%), Positives = 316/459 (68%), Gaps = 13/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ K + C +CG +WQGQC C WN + E + S S + Sbjct: 1 MAKS-KTLYQCQQCGGHSSKWQGQCPHCFEWNCLEEQAVQTS--------TSRFKSLNKK 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + ++++ + E+ R T E DRVLGGG+VPG LIGG+PG GKSTLL+Q L L Sbjct: 52 SNLININEVEINEIFRHPTNNSELDRVLGGGLVPGGVTLIGGDPGIGKSTLLIQALSSLT 111 Query: 121 QQMK----TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 + +Y+TGEES++QVAMRA RL L +L +LSE ++ I + E+E+P ++VI Sbjct: 112 KNPNQEITAIYITGEESIEQVAMRARRLDLEVSDLLVLSEINLGNIITVIEKEKPSVVVI 171 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ + ++ S+PGSV+QVRE AA LTR AK V+++ VGHVTK+GS+AGP+VLEH Sbjct: 172 DSIQTLFSEELNSAPGSVSQVRECAAQLTRVAKANDVSMIFVGHVTKEGSIAGPRVLEHI 231 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +G+++S +R +RS KNR+GAVNELG+++MTE+GL+E+ NPSAIFLS + Sbjct: 232 VDTVLYFEGESNSSYRLVRSIKNRYGAVNELGIYSMTEKGLKEILNPSAIFLSETSFDQA 291 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS V V+ EGTRP+L+E+QALVD S ++P+R++VGLE NR++++LAVL++H GL Sbjct: 292 GSVVTVMQEGTRPILIELQALVDESKQSSPKRLSVGLENNRISMILAVLNKHLGLSCHSH 351 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DVF+N VGGVK++E DLA+L+A+ SSL+++ + ++FGEVGL GE+RPV GQERI Sbjct: 352 DVFLNAVGGVKISEPGVDLAVLIAIASSLQEKQVHSKTLIFGEVGLGGEVRPVVRGQERI 411 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 EA K GF+R I+P N+PKK + +++ V + +AL+ Sbjct: 412 QEAIKLGFKRIILPRKNLPKKTIDDVELIPVDNIKNALN 450 >UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD3_ELUMP Length = 454 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 181/455 (39%), Positives = 274/455 (60%), Gaps = 10/455 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K FVC CG P+W GQC C WNT+ E AA A + ++ +++ Sbjct: 2 KLKTVFVCQSCGFKAPKWTGQCPDCSEWNTMVEEVEAAPSKTASKSKSF----TSFSSEI 57 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 LSD R TG E DR+LGGG+V G IL+ G PG GKSTL+LQT L++ Sbjct: 58 INLSDTKTLREERELTGISELDRLLGGGIVKGQLILLAGAPGIGKSTLMLQTAASLSKGK 117 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 K LY++GEESL Q++ RA RLG+ N+ +LSET+++ I ++ +P++++IDSIQ ++ Sbjct: 118 KVLYISGEESLNQISSRALRLGVEGKNIFLLSETNMQNIIEALDKVKPEVLIIDSIQTVY 177 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 + SSPG++ QVRE AA L R K +G + ++GHVTKDG LAGPKVLEH +D + Sbjct: 178 HPEFSSSPGTIGQVRECAAELLRLCKPKGTVLFILGHVTKDGELAGPKVLEHMVDTVLYF 237 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL-SRGDEVTSGSSVMV 302 D + D+ R LR HKNRFG+ +E+G+F MT GL V + S F + ++ G + + Sbjct: 238 DTEKDNILRLLRPHKNRFGSTHEIGLFQMTGHGLTPVEDASVYFAGNSRNKPLIGRAYSI 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTRP+L E+QALV + PRRV+ G++ NR +LLA + ++ G+ + ++D+++++ Sbjct: 298 ALEGTRPILTEVQALVVPTRYPFPRRVSTGIDLNRCQVLLASIEKNAGISLENKDIYISL 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GGVK+ + + DLAL A++SS++D P+ V EVG+ G + VP RI+EA + Sbjct: 358 AGGVKIKDPALDLALSAAVISSVKDIPISNTDVFLAEVGILGPLAKVPLADRRIAEAGRL 417 Query: 423 GFRRA---IVPAANVPKKAPEGMQIFGVKKLSDAL 454 GF+R I+ P Q+ ++ ++D + Sbjct: 418 GFKRVFTSIISKNEEPSDNKT--QVLQLESIADLV 450 >UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKL6_FIBSS Length = 463 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 288/459 (62%), Gaps = 5/459 (1%) Query: 3 KAPKRA-FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 K+ K ++C ECG P+W G+C C AW+++ E + + +G V Sbjct: 6 KSKKEIEYLCTECGNTTPKWAGKCPFCGAWSSLKEHVIER---ITDGAGRTGRGLGGPVH 62 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-A 120 KV L D++ E+ R ST EFDRVLGGG PGS +LIGG+PG GKSTL+L TL + A Sbjct: 63 KVVLLKDVAAEDTRRLSTANSEFDRVLGGGFAPGSLVLIGGDPGIGKSTLVLTTLATMNA 122 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 +K LYV+GEES QV +R+ RL + ++ +L ET++E+I A+E +P+++VIDSIQ Sbjct: 123 AGVKALYVSGEESACQVKLRSERLNVSGSDMMLLCETNLEKILEQAKEVKPQVLVIDSIQ 182 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 ++ +D+ +PG Q+RE L FAK G +++GHVTKDG +AGP++LEH +D Sbjct: 183 TVYKSDLSGTPGCATQLRECTLDLMVFAKNSGCITILIGHVTKDGQIAGPRILEHMVDTV 242 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 V +GD + ++R LR+ KNRFGA +E+GVF MT GL V NPS +FL G T GS+V Sbjct: 243 VYFEGDRNHQYRLLRTIKNRFGATDEIGVFEMTSHGLNPVLNPSKVFLQEGVPPTPGSAV 302 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG+R LL E QALV+ + A P+RVA G++ RL I+LA+L + GG+ + DVF Sbjct: 303 CCTMEGSRALLFETQALVNQTNFAVPQRVAAGIDPKRLTIILALLEKFGGVTIGASDVFA 362 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 ++ GG+KV + S+DLAL LA+ S+ PL + + GE+GL+GE+R V +R+ EA+ Sbjct: 363 SIAGGMKVNDASSDLALALAVASNHLGIPLSRQTIAIGELGLSGEVRGVSLLDQRLKEAS 422 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 + G A+VPA+ + M++ V LS+A+S D Sbjct: 423 RLGMTEAVVPASCKLSENMGSMKVVRVHSLSEAISWLMD 461 >UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus RepID=B5YF80_DICT6 Length = 457 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 183/461 (39%), Positives = 272/461 (59%), Gaps = 11/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+K K FVC CG + RW G+C C +WN+ E+ + R + Sbjct: 1 MSKV-KSKFVCQVCGYESVRWLGRCPNCQSWNSFIEIVEDKGKVDKRVNKE--------E 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +V +L I E R TG FD ++GGG+V GS L+ G PG GKSTLLLQ L+ Sbjct: 52 LEVYRLDQILNYEPVRLKTGLTGFDYIIGGGIVEGSVTLLAGEPGIGKSTLLLQLAISLS 111 Query: 121 QQM-KTLYVTGEESLQQVAMRAHRLGLPTD-NLNMLSETSIEQICLIAEEEQPKLMVIDS 178 ++ + LY++ EESL QV +R RL +++ +SE IE I E+ L+++DS Sbjct: 112 KESSRVLYISAEESLSQVGLRLKRLTSKDRLDIDFVSERDIENILPELEKFNYSLIIVDS 171 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ ++ +SPG+V QVRE + L FAK VA+++VGHVTK+G +AGPK+LEH +D Sbjct: 172 IQTIYSSEFPTSPGNVVQVRECTSKLVDFAKKNNVAVILVGHVTKEGDIAGPKILEHLVD 231 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+G+ R LR KNRFG N+ ++ M E GL EV + SA + + +GS Sbjct: 232 VVLYLEGERYHDLRVLRVVKNRFGPTNDFILYEMKESGLFEVEDISAKMIENRNINVAGS 291 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ V EGT+PLL+E+QALV + + PRR+A G++ N+L +LLA+L + +D+DV Sbjct: 292 IIVPVMEGTKPLLIELQALVSKTNTSYPRRIASGVDFNKLVLLLAILEKKLRTNFSDKDV 351 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 FVNVVGG+K+ E + DL L A++S+L D+P P D++ GE+GL GE+R VP + R+ E Sbjct: 352 FVNVVGGIKINEPAVDLGLAFALLSALMDKPFPSDMIAVGEIGLGGEVRTVPHIERRLKE 411 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 A K GF +A++P K M I V + + + + Sbjct: 412 ARKFGFIKALIPKDKKIKLNEYNMNILPVSDIEEGIKLVWG 452 >UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain protein n=1 Tax=uncultured marine microorganism HF4000_APKG7H23 RepID=B3T9S3_9ZZZZ Length = 459 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 202/459 (44%), Positives = 283/459 (61%), Gaps = 9/459 (1%) Query: 1 MAK--APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA 58 MA K ++C ECG PRW+G+C C+AW++ A+ P + Sbjct: 1 MASLAKAKTLYLCRECGHTSPRWEGRCPLCNAWDSY-----ASFPDSKAAHLPQSTRATT 55 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +KL + + PR S G E DR+LGGG VPGS +LI G PG GKSTLLLQ Sbjct: 56 TETTARKLREYEASDQPRVSVGLAEVDRLLGGGAVPGSLLLIAGEPGIGKSTLLLQMASH 115 Query: 119 LA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 LA LY++GEES QV +RA RLG+ + ++ L+ET+ E+I E +P++ ++D Sbjct: 116 LAGTGAPVLYISGEESAAQVRLRAQRLGVSSAEVHFLAETNGERILNELEALRPEMAMVD 175 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ + V S+ GSVAQVRE L R+AK RG I + GHVTKDG++AGP+VLEH + Sbjct: 176 SIQTLSSDGVPSAAGSVAQVRECTQMLLRWAKERGCPIFLAGHVTKDGAIAGPRVLEHMV 235 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + L+G++ S +R LR KNRFGA N++ + M G+ EV +PSA+ L TSG Sbjct: 236 DVVISLEGESLSSYRLLRCTKNRFGATNDVALLEMRGDGMAEVPDPSAVLLGERQPGTSG 295 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S+V V EGTRPL+ E+QAL + S+ + PRR A G+E +R+ ++ AVL R GG+ + +QD Sbjct: 296 SAVTVTLEGTRPLMAEVQALTNPSLFSPPRRTANGMEFSRVMMIAAVLGRRGGVNLGNQD 355 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 + V+V GG+++ E +ADLA L++ SSLRD PL VV GEVGL GE+R VP + R+ Sbjct: 356 LIVSVAGGLRIREPAADLATALSIASSLRDIPLDSQAVVLGEVGLNGEVRSVPQLERRLV 415 Query: 418 EAAKHGFRRAIVPAAN-VPKKAPEGMQIFGVKKLSDALS 455 EA +HGF RA+VP N + + A M++ V + A+ Sbjct: 416 EAVRHGFTRALVPKNNALGELAAFEMEVVPVVSVQQAME 454 >UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R3_GARVA Length = 495 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 178/494 (36%), Positives = 262/494 (53%), Gaps = 38/494 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLA-------------------- 40 MA ++C+ECG +W G+C C W T+ E R A Sbjct: 1 MASKSTLHYLCSECGWSGSKWYGRCPECGEWGTVNEFREARVSGLSRTTRTPRATTASRA 60 Query: 41 -ASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 + + + R ++ Q +S+I ++ R TGF EFDRVLGGG+VPGS L Sbjct: 61 YSPDSITTSNRNIAHSTLDSATSAQPISEIQADDAMRIHTGFSEFDRVLGGGLVPGSVTL 120 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 I G PG GKSTLLL+ +++Q K LY++GEES QV +RA R+ D L + Sbjct: 121 IAGEPGIGKSTLLLKAAAYVSKQSKESNTPPVLYISGEESAAQVKLRASRINAVNDYLLL 180 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 + ++ + + E P L ++DS Q + +V G QVRE A+ L AK + Sbjct: 181 ATTGDLDTVLDLIETHHPTLAIVDSAQTISAQEVDGITGGSTQVREVASALIDVAKANNI 240 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 I++VGHVTKDGS+AGP+ LEH +D +GD + R LR+ KNRFG +E+G F M+ Sbjct: 241 PILLVGHVTKDGSIAGPRTLEHLVDTVCQFEGDTQTALRMLRAVKNRFGPTDEVGCFDMS 300 Query: 274 EQGLREVSNPSAIFLSRGDE----------VTSGSSVMVVWEGTRPLLVEIQALVDHSMM 323 +G+ EV +PS +FLS + G+ V EG R L +EIQALV S + Sbjct: 301 GEGIEEVPDPSGLFLSSTENANQGKNAQDCTNDGTCVTFTLEGHRSLPIEIQALVTQSAL 360 Query: 324 ANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVS 383 PRR G++ NRLA+L AVL+RHG + + +D++V+ + G E S DLA++ A+ S Sbjct: 361 PTPRRAVSGVDSNRLAMLTAVLYRHGRVNLLAKDLYVSTIAGALAKEPSCDLAIVAALAS 420 Query: 384 SLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQ 443 + + + GE+ L G++RPVP + R+ EAA+ G++RAIV G++ Sbjct: 421 TAAGKAVTPKTCAIGEMSLTGQVRPVPRIEPRLREAARIGYKRAIVCHM-WKNVNIPGLE 479 Query: 444 IFGVKKLSDALSVF 457 I V + +AL Sbjct: 480 IIEVSTVREALKAL 493 >UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus marinus RepID=A8G2D8_PROM2 Length = 453 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 173/458 (37%), Positives = 279/458 (60%), Gaps = 11/458 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M+ F+C CG++ ++ G+C C++WN+I E + + Sbjct: 1 MSSKLST-FICQNCGSETSQYFGRCLNCNSWNSIVEEI------KIKRSKYQDLKDIKNS 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K ++IS +++ RF++GFKE DRVLGGG+VPGS +L+GG PG GKST++LQ+ K++ Sbjct: 54 KKSIPFNEISSKKISRFTSGFKEIDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKIS 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LYVT EESL+QV +R RL ++ L + +ET++ I + P +IDSIQ Sbjct: 114 LNEKVLYVTAEESLEQVKIRWERLNQDSNELKIFAETNLSLIMEEIKSVNPSFAIIDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 +H +++SSPGSV+QVR ++ L AK ++++++GHVTKDG+LAGPK LEH +D Sbjct: 174 AIHNHEMESSPGSVSQVRACSSELQNLAKNNNISLLIIGHVTKDGALAGPKTLEHLVDVV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD S R LRS KNRFG+ E+G+F M E+GL EV NPS+IF ++ E SG + Sbjct: 234 INFEGDKVSSHRLLRSIKNRFGSTFEIGIFEMLEKGLVEVKNPSSIFTNK--ENISGVTT 291 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 + EG+RP V+IQALV+ + +NPRR G+ NRL +LAV+ +H G+++++ D ++ Sbjct: 292 TITNEGSRPFAVDIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYI 351 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 GG ++ + S+DL + ++++SSL++ P GE+GL+G++R + + +I EA Sbjct: 352 ATGGGFEINDPSSDLGVAISILSSLKNLPPLASTSFIGELGLSGQVRKSNNLRTKIEEAV 411 Query: 421 KHGFRRAIVPA--ANVPKKAPEGMQIFGVKKLSDALSV 456 + G + +VP + + I + + +A+ Sbjct: 412 RMGIKNIVVPKLEEELNNNFQNLINIKEISNIKEAVDY 449 >UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C1A917_GEMAT Length = 465 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 209/461 (45%), Positives = 291/461 (63%), Gaps = 10/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + + C +CGA++P+W G+C +C AWNT+ E +A ++R + A Sbjct: 1 MAK-TRTVYRCTDCGAEFPKWAGRCESCSAWNTLVEEVVAP---TTTSKRTAARAAGGVA 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL- 119 + L ++ + PR+ TG EFD VLGGG+VPGS +L+GG PG GKSTLLLQ +L Sbjct: 57 GRTVTLGSVTSSDTPRWRTGLDEFDFVLGGGIVPGSMVLVGGEPGIGKSTLLLQVAARLE 116 Query: 120 AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIA-----EEEQPKLM 174 A TLYV+GEES QV +RA RL +++L+ETS+E I A + + + Sbjct: 117 AAGQATLYVSGEESALQVRLRAERLAEDASAVSLLTETSLETILATAAQPTGDGRPVRAL 176 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 ++DSIQ +H ++ +PG+V QVRE AA L RFAK G + ++GHVTK G +AGPK LE Sbjct: 177 IVDSIQTVHTELLEGAPGNVGQVRECAARLMRFAKDSGTTVFVIGHVTKGGGIAGPKTLE 236 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +GD+ R LR+ KNRFG+V+E+GVF M GL V NPSA+F+ EV Sbjct: 237 HIVDTVLYFEGDSTLDHRVLRATKNRFGSVDEIGVFRMVSTGLIPVDNPSALFVGDRREV 296 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 SGS+V + EGTRP+LVE+QAL + P+RVA G++ RLA+LLAVL + GG A Sbjct: 297 ASGSAVCALMEGTRPVLVEVQALAAKAGFGTPQRVANGIDARRLALLLAVLDKRGGFSCA 356 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DVF NVVGG++V E S DLA++ A+ SS+ D+PLP V GE+GL GE+RPV + Sbjct: 357 QLDVFCNVVGGMRVQEPSVDLAVVAALASSVVDKPLPSHAVFLGELGLGGEVRPVSQAER 416 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 R++EAAK G A + +P++ P + + GV+ L D L Sbjct: 417 RLAEAAKLGMTTAFMSDRAIPRRVPGDITVIGVRTLVDVLQ 457 >UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8K3_9FIRM Length = 469 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 182/461 (39%), Positives = 277/461 (60%), Gaps = 12/461 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K+ FVC+ECG + P++ G+C C WNT +E + L S KV Sbjct: 16 KDKKIFVCSECGYESPKYWGKCPDCGNWNTFSEF-------SKKELDLVNSKSSVFTPKV 68 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-Q 122 L D+ +E RF+T E D VLGGG+V S +L+GG PG GKSTLL+QT ++ Sbjct: 69 TNLKDVDTKEDMRFTTSISELDNVLGGGIVASSLVLVGGEPGIGKSTLLMQTAHNVSMIG 128 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 + LY + EESL Q+ +R RL L ++ +LS T IEQI A+E + L++IDSIQ + Sbjct: 129 KRVLYASSEESLSQLKLRLDRLDLKGSDILVLSNTDIEQIIESAKENKADLLIIDSIQTV 188 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 A++ S+PG++ QVRE L FAK ++ +VGH+TK G++AGPK +EH +D + Sbjct: 189 RSANIPSAPGTITQVRECTNLLMNFAKATNTSVFIVGHITKQGTIAGPKTIEHMVDTVMY 248 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 + +++S R LR KNRFG+ E+GVF MT +GL V+NPS + L + + GS + Sbjct: 249 FESESNSSLRILRLSKNRFGSSEEIGVFEMTRKGLECVTNPSKLLLEDRENRSYGSVICS 308 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 + EG R +L+EIQAL S PRRV+ G E NR +LAV+ + +++ DV++NV Sbjct: 309 IMEGNRSVLIEIQALAMMSSFQVPRRVSTGFEYNRFVQILAVIEKMTNVKIHSTDVYLNV 368 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 VGGV+V ET++DLA+ A++SS+ + +P + ++ GEVGL GEIR + + +RI EA Sbjct: 369 VGGVRVKETASDLAVACAVISSMLKKEIPINTIIIGEVGLCGEIRKINNIFKRIKEANSL 428 Query: 423 GFRRAIVPAANVPKKAPE---GMQIFGVKKLSD-ALSVFDD 459 GF++AI+P ++ + ++I + L + +F++ Sbjct: 429 GFKKAIIPRNSLDEHEDISNLNIEIIEISTLKECVFKLFNN 469 >UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L030_THERP Length = 470 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 200/453 (44%), Positives = 295/453 (65%), Gaps = 9/453 (1%) Query: 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65 + +VC CG + + G+C +C AW T+ E + A+P + A VQ+ Sbjct: 9 RTVWVCQSCGLESSGYYGRCPSCGAWGTMVEQAVDATPATGDAKGTG--------APVQE 60 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQQMK 124 LS ++ E R S EFDRVLGGG+VPG+ +L+GG+PG GKSTLLLQ +L ++ ++ Sbjct: 61 LSRVTSAERTRLSLRSPEFDRVLGGGLVPGALVLLGGDPGIGKSTLLLQAALRLASEGLR 120 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 LYV EES +Q+ +RA RLG +D + +L+ET++++ IA+E P ++++DSIQ + + Sbjct: 121 VLYVAAEESPEQIRLRADRLGKTSDGVLILAETALDRAIEIAQELDPAILIVDSIQTVFL 180 Query: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244 + +SSPGSV+QVR+ A L +FAK + +VGHVTK+G +AGP+V+EH +D + L+ Sbjct: 181 SSSESSPGSVSQVRDCTAQLLQFAKRARTPVFLVGHVTKEGLIAGPRVVEHMVDVVLYLE 240 Query: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304 G+ + R LR+ KNRFG+ NE+GVF MT+ GL +VSNPSA+FL+ +GS+V+V Sbjct: 241 GERFHQHRLLRAAKNRFGSTNEIGVFEMTDSGLLDVSNPSALFLAERASHAAGSAVVVTL 300 Query: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 EGTRP+L+E+QAL + PRR+A G + RL +L+AVL +H GL++ +QDVFVNV G Sbjct: 301 EGTRPILIEVQALTSSAGYGTPRRIATGFDATRLQVLVAVLSKHAGLKLGEQDVFVNVTG 360 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G ++ E +ADL + LA+ SS PL D V GE+GLAGE+R V + R+ EAA+ GF Sbjct: 361 GYRLVEPAADLGVALAIASSASGLPLDDDAVFIGELGLAGEVRSVHGLERRLQEAARLGF 420 Query: 425 RRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 R A VPA+ G++I V ++ A+S Sbjct: 421 RSAYVPASARISSPVSGLRIVAVGSIAQAVSSL 453 >UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickettsia RepID=RADA_RICFE Length = 446 Score = 477 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 187/459 (40%), Positives = 273/459 (59%), Gaps = 19/459 (4%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K+ ++C+ CG P+W GQC C W +I E ++ + + + + +G Sbjct: 3 KDKKHYICSNCGNTSPKWSGQCFDCGVWGSIVEEIVSTNKAIVKTGSKQDFDKLSGHVA- 61 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC-KLAQQ 122 E R T E +RVLGGG+V GSAILIGG+PG GKSTLLLQ A + Sbjct: 62 ---------EQLRIPTPIGELNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFASK 112 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE--EEQPKLMVIDSIQ 180 M LY+TGEESL Q+ +RA RL L N ++L+ T++E I E + L+VIDSIQ Sbjct: 113 MNCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNIDLVVIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + ++ S PG+V+Q+R A L +AK + I++ HVTKDG LAGPK+LEH +D Sbjct: 173 TITTKELSSPPGTVSQIRICANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD ++ FR LRS+KNRFG V E+GVF M GL EV+NPS +FL + ++ G+S+ Sbjct: 233 LYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMCGSGLIEVTNPSELFLMKREQNVIGTSI 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG+RPLL+E+QAL+ S M PRR AVG + NRL+++LAVL GL +A+ +V++ Sbjct: 293 FAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDANRLSMILAVLSSRIGLNLANYEVYL 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 ++ GG+K+ + ++DLA+ +++S+ +P+P+ V FGE+ L+GEIR + RI EA Sbjct: 353 SIAGGLKIADPASDLAVAASLISAATGKPVPEHSVFFGEISLSGEIRKTAKAETRIKEAV 412 Query: 421 KHGFRRAIVPA-ANVPKKAPEGMQIFGVKKLSDALSVFD 458 K GF + I N+ I V L D + Sbjct: 413 KLGFNKIICSKLENLTYDF-----ISSVSHLKDLKEIIR 446 >UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID=Q04QR6_LEPBJ Length = 459 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 186/460 (40%), Positives = 268/460 (58%), Gaps = 7/460 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M K R F+C CG DY RW G+C +C WN+I E + Sbjct: 1 MKKRLTRTFICQSCGQDYSRWAGKCESCGNWNSIVEEIGGERFAPSGGNSRKN----KSY 56 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + E L R TG KE D VLGGG+VPGS LIGG PG GKSTL+L+ L Sbjct: 57 QEPIPLDRVEEESLERMGTGLKELDLVLGGGLVPGSLTLIGGEPGVGKSTLVLEVSRYLT 116 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 Q K LY++GEES Q+ MRA R+G + NL + SET E I + E +P + +DSI Sbjct: 117 QANKKVLYISGEESPSQIRMRAERMGFRSSNLLLTSETYAENISAMIEGARPTAVFVDSI 176 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + G+V Q+RE L AK G+ I+M GH+TK+G++AGPK+LEH +D Sbjct: 177 QTIAREALPNQAGTVTQLRECTQILLETAKRSGIPILMTGHITKEGTIAGPKILEHLVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD + +R LR+ KNRFGAV +L +F M GLREV + ++IF+S G E SGS Sbjct: 237 VLYFEGDRLNYYRLLRAVKNRFGAVGDLAIFEMFSGGLREVGDRNSIFVSAGAEERSGSV 296 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG+R L VE+QALV + A RR+A G + R+ +L AV+ ++ +++ + D+F Sbjct: 297 ISAVLEGSRALTVEVQALVSKTGFAQARRMAEGPDTRRVILLAAVIEKYIKIKLGECDLF 356 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 N+ GG+ E + DLA+ +++SS D+PLP+ V GEVGL+GE+R + RI E Sbjct: 357 SNLAGGLNADEPALDLAICTSIISSYLDQPLPKGTCVLGEVGLSGEVRSIGQANLRIKEL 416 Query: 420 AKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDALSVFD 458 A G ++ I+P N+ + +QI G++ L+D L + Sbjct: 417 AGVGMKKVILPEGNLSELVQNTDIQIQGIRSLND-LRLLF 455 >UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum sp. Group II RepID=A3EUB1_9BACT Length = 461 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 202/462 (43%), Positives = 280/462 (60%), Gaps = 8/462 (1%) Query: 1 MAKAPKR-AFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA- 58 M K ++ C CG +W G C +C E P+V+ + RL Sbjct: 1 MKKKSVPDSYECPACGYRSAKWMGFCPSCQ------EAPEGLVPVVSASSRLESLLSEGD 54 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 G + ++ D+ + R S+GF+EFDRVLGGG V GS IL+GG+PG GKSTL LQ + Sbjct: 55 GTPRALRMEDVGKVAVERTSSGFREFDRVLGGGFVRGSFILLGGDPGVGKSTLALQAVAH 114 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 +A K LY GEES +QV MR RLG +L +L ET +E I + P+ +V+DS Sbjct: 115 MANGHKVLYAAGEESPEQVRMRYDRLGRKGGDLFILPETDLEAIVREVKRLSPEFLVVDS 174 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ + M S GSV +RE+A+ L AK V +++VGHVTK+G +AGP+VLEH +D Sbjct: 175 IQTVTMGADGPSSGSVGLLRESASVLLELAKRASVTVLIVGHVTKEGVIAGPRVLEHLVD 234 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+GD R LR+ KNRFG ELG+F M+ GLREV N S+ FL E SGS Sbjct: 235 TVLYLEGDRSHPVRLLRTVKNRFGPTRELGIFEMSPDGLREVENASSFFLEGRKERLSGS 294 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 V+ EGTRPLLVE+Q+LV + NPRRVA G+ +RL+IL AVL R GL ++ +D+ Sbjct: 295 VVVSSLEGTRPLLVELQSLVSPTTFPNPRRVAQGVPVSRLSILAAVLERRAGLSLSSRDI 354 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +VNV GGV + ET++DL L+L++ SL+D L D+VVFGEVGL GE+R V + R++E Sbjct: 355 YVNVAGGVSLEETASDLGLVLSLAGSLKDISLSPDVVVFGEVGLGGEVRRVQEMESRLTE 414 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 A +HGF A++PA+ G+ + V+++ +AL + L Sbjct: 415 ARRHGFSHAVLPASGKKYPDVSGLSLHPVREVGEALELLKKL 456 >UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A7NKT5_ROSCS Length = 464 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 196/453 (43%), Positives = 279/453 (61%), Gaps = 7/453 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + FVC +CG+ RW G+C C W+++ E SG+ G + Sbjct: 3 KVRTVFVCQQCGSQQSRWMGRCPDCGTWDSLVEQTERRDAASRSRAITSGFQG-----RP 57 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ- 122 L D+++ R +EF VLGGG+VPGS +LIGG PG GKS+LLLQ A Sbjct: 58 VGLRDVAIGGFTRLPVLGREFVGVLGGGLVPGSVVLIGGEPGIGKSSLLLQVAAHFADHV 117 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 LYV+ EES+QQ+ +RA R+GL + L + SET++ I +P+L+V+DSIQ + Sbjct: 118 GPALYVSAEESVQQIKLRAARMGLEPERLLVYSETNLNAILDQVAAIKPQLVVVDSIQTV 177 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ ++ S+ GSV+QVRE A L R AK + + +VGHVTK+G++AGP+VLEH +D + Sbjct: 178 YLEELSSAAGSVSQVREGALRLLRVAKEHAIPMFLVGHVTKEGAIAGPRVLEHIVDVVLY 237 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 L+GD ++R LR KNRFG+ +E+GVF MT GLREV NPS FLS GS+V V Sbjct: 238 LEGDRFHQYRLLRGVKNRFGSTDEVGVFEMTAHGLREVPNPSQAFLSERTVNAPGSAVAV 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 EGTRP+LVE+QAL HS A PRR A G + NRL +L+AVL + GL + +QDV+VN+ Sbjct: 298 TMEGTRPILVEVQALTAHSAGAQPRRTANGFDMNRLLMLVAVLTKRVGLPLFNQDVYVNI 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 VGG+++ E + DLA+ +A+ SS R+ + QDL + GEVGLAGE+R + R++EA+ Sbjct: 358 VGGLRIDEPAVDLAVAVAIASSFRNMRVRQDLAMVGEVGLAGELRSAGQLERRLTEASGL 417 Query: 423 GFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 GF A+ P EG+ + + L+DA+ Sbjct: 418 GFTCALCPET-AHLPCIEGLGVITARALADAIE 449 >UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickettsiales RepID=RADA_RICBR Length = 448 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 187/454 (41%), Positives = 275/454 (60%), Gaps = 19/454 (4%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K+ ++C+ CG P+W GQC C W +I E ++ ++ +A+ + + Sbjct: 3 KEKKHYICSNCGNTSPKWSGQCFDCGVWGSIIEEKVISNKNIAKIGSKQDFEQLSS---- 58 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ-TLCKLAQQ 122 ++ + R ST E DRVLGGG+V GSAILIGG+PG GKSTLLLQ A + Sbjct: 59 ------NVTDQVRISTPIGELDRVLGGGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASK 112 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE--QPKLMVIDSIQ 180 +K LY+TGEESL Q+ +RA RL L D N+L+ ++E I E L+VIDSIQ Sbjct: 113 VKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + ++ S PG+V+Q+R A L +AK + I++ HVTKDG LAGPK+LEH +D Sbjct: 173 TIATRELTSPPGTVSQIRTCAHELVNYAKQNNIIILLSCHVTKDGQLAGPKLLEHLVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +GD ++ FR LRS+KNRFG V E+GVF M+ GL EV+NPS +FL + ++ G+++ Sbjct: 233 LYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPSELFLMKREQNVIGTAI 292 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG+RPLL+E+QAL+ S M PRR AVG + NRL+++LAVL GL +A+ +V++ Sbjct: 293 FAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRIGLNLANYEVYL 352 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 ++ GG+K+ E ++DLA+ +++S+ ++PLP+ V FGE+ L+GEIR + RI EA Sbjct: 353 SIAGGLKINEPASDLAVAASLISAATNKPLPEHSVFFGEISLSGEIRKTAKAEARIKEAL 412 Query: 421 KHGFRRAIVPA-ANVPKKAPEGMQIFGVKKLSDA 453 K GF I N+ + L D Sbjct: 413 KLGFNNIICSKSENLTHDFISSI-----AHLKDL 441 >UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BB82_SANKS Length = 473 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 192/448 (42%), Positives = 274/448 (61%), Gaps = 9/448 (2%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 + C ECG +W G+C C W ++TE AAS + Q + + Sbjct: 20 YRCTECGWTTSKWVGRCGECQEWGSVTEAAAAASGPKTVASAPTRSV-------AQPIGE 72 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLY 127 I ++ TG EFDRVLGGG+VPG+ +L+ G PG GKSTLLL A+ + LY Sbjct: 73 IDVDSAQAAPTGISEFDRVLGGGIVPGAVVLLAGEPGVGKSTLLLDVASTTARAGRRVLY 132 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 +TGEES QV +RA R+ L + +ET + Q+ E P L+++DS+Q + A V Sbjct: 133 ITGEESAGQVRLRAERIDALAPTLLLAAETDLGQVLGQIEATDPDLLIVDSVQTVASAQV 192 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 SPG V QVRE A+ L AK R + +V+VGHVTKDG++AGP+ LEH +D + +GD Sbjct: 193 DGSPGGVGQVREVASALIAAAKGRNMPVVLVGHVTKDGAVAGPRTLEHLVDVVLQFEGDR 252 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGT 307 SR R +R+ KNR+G +E+G F +TE G+ +++PS +FLS + G+ V V EG Sbjct: 253 HSRLRMVRAVKNRYGPTDEVGCFELTEDGIAGLADPSGLFLSHINLAVPGTCVTVTLEGR 312 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 RPL +EIQ+LV S +ANPRR G++ +RLA++LAV+HRH G ++ D DV+V+ +GG + Sbjct: 313 RPLALEIQSLVVASPLANPRRTTSGIDSSRLAMILAVIHRHLGARLTDADVYVSTIGGAR 372 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 VTE +ADLA+ LA +S+L ++P+P + GEVGLAGE+R V R+SEAA+ GF RA Sbjct: 373 VTEPAADLAIALATLSALENKPVPVGTIAIGEVGLAGELRAVSGISRRLSEAARLGFTRA 432 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDALS 455 +VP AP GM + L++A+ Sbjct: 433 VVPPG-TSGPAPAGMTLLPAANLAEAVQ 459 >UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX97_9BACT Length = 478 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 205/464 (44%), Positives = 283/464 (60%), Gaps = 7/464 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + ++ C CG P+W G C ACH + SP + AG A Sbjct: 1 MAKKDQESYRCPACGYRSPKWMGFCPACHE--APEGLVPEESPGGRVERYVREAAGGAAE 58 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ +S + + +LPR STG EFDRVLGGG+VPGS IL+GG+PG GKSTL+LQT+ LA Sbjct: 59 SRALPISGVVVGDLPRSSTGLSEFDRVLGGGIVPGSFILLGGDPGIGKSTLVLQTVANLA 118 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGL---PTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 ++ L V GEES +Q+ MR RL T L +L ET + + A P ++++D Sbjct: 119 REKTVLVVCGEESPEQIRMRFDRLEAGKKKTSGLFLLPETDLSLVLAEAARLSPDILIVD 178 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 SIQ + + + S GSV Q+RETAA L FAK V +++GHVTKDG++AGP+VLEH + Sbjct: 179 SIQTVFLPEWTQSAGSVIQLRETAATLLEFAKRSRVTTLVIGHVTKDGTIAGPRVLEHLV 238 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + L+G+ R LR+ KNRFG E+G+F M E GL EV+NPSA FL D G Sbjct: 239 DTVLYLEGERGQPLRILRTAKNRFGPTQEVGLFEMEEGGLVEVTNPSAFFLEGRDPGRPG 298 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S+V+ EG+RP+LVE+QAL + + PRRV G+ NRLA+L AVL R GL ++ D Sbjct: 299 STVVCGMEGSRPILVELQALAAPTSLPMPRRVTQGVSSNRLALLTAVLVRRIGLDLSGMD 358 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 +++NVVGGV++ ET+ DL + L +VSS+R+ LP VV GEVGLAGE+R +P ER++ Sbjct: 359 LYLNVVGGVEIEETALDLGIALGVVSSVRELILPAGWVVVGEVGLAGEVRRIPGIIERMA 418 Query: 418 EAAKHGFRRAIVP--AANVPKKAPEGMQIFGVKKLSDALSVFDD 459 EAA+ GF + P + + P G+ V L AL+ + Sbjct: 419 EAARLGFSHMVGPVLPSGKSRPLPRGIVYHPVSDLRQALAFLEK 462 >UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEX2_9BACT Length = 444 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 186/456 (40%), Positives = 287/456 (62%), Gaps = 13/456 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA F C ECG + +W G+C AC AW T+ E + + + + Sbjct: 1 MA----TIFFCTECGFETGKWSGKCPACGAWGTLKE-------STRVTGKNNKPVETLPL 49 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +K +++ D+ +E R TG KEFD VLGGG+V G ILIGG PG GKSTL+LQ + Sbjct: 50 SKPERIIDLEYDEFSRLLTGIKEFDLVLGGGIVKGMLILIGGEPGIGKSTLMLQLSEWMG 109 Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 +Q KTLY +GEES +Q+ +R+ L + ++N+ +L + E I E+ +P L ++DSI Sbjct: 110 KQNKKTLYCSGEESAEQIRLRSKHLKVTSENIYLLCTNNAEHIIEAIEDNKPDLAIVDSI 169 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + + PG+V Q+RET + L R K G+ + +VGHVTK+G +AGPK++EH +D Sbjct: 170 QSVSIPSLDALPGTVTQLRETTSRLLRTVKNLGIPLFLVGHVTKEGLVAGPKIIEHMVDT 229 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +G+ S+++ LR+ KNRFG+ NE+G+F MT GL EVSNP+ IFLS ++ G++ Sbjct: 230 VLYFEGEQRSQYKILRAVKNRFGSTNEIGLFEMTHLGLIEVSNPNNIFLSH-EQNNIGTA 288 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + + EG+R +VE+Q LV+ S P+RVAVGL+Q +LA+LLA+L ++ L + + DVF Sbjct: 289 ISCIMEGSRSFIVEVQTLVNASNYGTPQRVAVGLDQKKLAMLLAILEKNLSLYLRNCDVF 348 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VN+ GG++ T+ S DLA+L A++SS++D+PL + V GEVGL GE+RPV + IS+ Sbjct: 349 VNLTGGIRSTDPSLDLAILAALISSMKDQPLIEKAVFIGEVGLNGEVRPVSQLDKHISQT 408 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALS 455 K G+ + + + K P+ +++ +K L AL Sbjct: 409 LKLGYEKIFISSYAKVKANPKVVKVKDIKALYSALR 444 >UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD6_9BACT Length = 440 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 183/442 (41%), Positives = 267/442 (60%), Gaps = 8/442 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K + C CG +W GQC C+ WN+ E + + +++ + + + V Sbjct: 3 KFKTVYTCKNCGYTSYQWIGQCPNCNEWNSFVEDVI----SLKESKKTESSSSKSHIEPV 58 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 + S S R S+G EFDRVLGGG VPG +L+ G PG GKST+L + L + + Sbjct: 59 KLSSVSSSVPPRRVSSGIGEFDRVLGGGFVPGQVVLLAGEPGIGKSTILTEIAKNL-KDL 117 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMVIDSIQVM 182 K LYV GEES+ Q+ +R R+G +NL +L ET+++ I +E++ L+++DS+Q + Sbjct: 118 KVLYVCGEESVDQIKIRVSRMGYNAENLLVLPETNVDIIVDNIDEKKEIGLVIVDSVQTL 177 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 ++ SPGS+ QVR + LT AK + IV+VGHVTK G +AGPKVLEH +D + Sbjct: 178 FSEELLGSPGSLVQVRGCSQILTNTAKKTNIPIVLVGHVTKGGVVAGPKVLEHIVDTILY 237 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 L+GD+ FR LR+ KNRFGAV+E+G+F M + G+REV NPS +FL + + GS V V Sbjct: 238 LEGDSQHLFRILRTSKNRFGAVSEVGIFEMVDNGIREVKNPSELFLKQRLLKSPGSCVTV 297 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 V EG RPLL EIQAL + PRR + G RL +L+AVL + GL + + DV+VNV Sbjct: 298 VMEGNRPLLFEIQALTVPTSFGYPRRTSSGFSNTRLQVLIAVLEKRAGLSLNNYDVYVNV 357 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GG KV+E + DLA+ LA+ SSL ++P+ +D+ FGE GL GE+R V +R+ EA K Sbjct: 358 AGGFKVSEYATDLAVCLAIASSLINKPIKEDVAAFGECGLNGELRQVTYQDKRMEEARKM 417 Query: 423 GFRRAIVPAA--NVPKKAPEGM 442 G+ + I + N+ + + + Sbjct: 418 GYEKIISSDSVKNISEAIKKSL 439 >UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio RepID=B8J0Q7_DESDA Length = 458 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 178/435 (40%), Positives = 255/435 (58%), Gaps = 10/435 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + ++C+ CGA +W+GQC CH WNT+ A S R A Sbjct: 1 MAK-LREIYICSSCGAQTMQWRGQCPGCHEWNTLEASVQARSSGKTRTSLGDSSAS---- 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + + +G + DRVLG G+VPG+AIL+GG PG GKSTLLLQ +A Sbjct: 56 GRPVALCQVEDAGHEPYGSGLQALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGLVA 115 Query: 121 Q-----QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 LY +GEESL Q+ RA RLG+ NL L+ + +E + A + P L+V Sbjct: 116 AQMASAGRPVLYASGEESLPQIKGRAERLGMLDPNLLALATSRVEDVVEAANAQNPALLV 175 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DS+Q + + + PG+V+QVR A L + G +++VGHVTKDG LAGP++LEH Sbjct: 176 VDSVQTLTSLEAEGLPGNVSQVRAVATSLLELCRRLGCTLILVGHVTKDGVLAGPRLLEH 235 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + L+GD FR LR KNRFG EL VF M ++G+ V +PS FL + D Sbjct: 236 MVDTVISLEGDRRQMFRLLRVFKNRFGPNEELLVFRMGQRGMEVVDDPSTFFLGQRDASL 295 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 SG++V++ +G RPL VE+QALV + ++ PRR A+G + RL +LLAVL + L A Sbjct: 296 SGTAVVMAVDGQRPLAVEVQALVSRTFLSIPRRAALGFDVGRLHLLLAVLEKRLKLNFAQ 355 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D++ V GG+K+ E DLAL+ A++SS D PLP+ V++GEV L G++RPV + R Sbjct: 356 VDIYAKVGGGMKLNEPGLDLALVAAVLSSYYDVPLPEKSVLWGEVDLNGQVRPVAAQDLR 415 Query: 416 ISEAAKHGFRRAIVP 430 +++A + GF + P Sbjct: 416 LTQARRLGFDPIVHP 430 >UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales RepID=B9KHP2_ANAMF Length = 456 Score = 466 bits (1199), Expect = e-130, Method: Composition-based stats. Identities = 179/459 (38%), Positives = 274/459 (59%), Gaps = 10/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M + K + C CG RW G+C AC AW++I E + AR ++ Sbjct: 5 MWVSTKVIYACQTCGNSSHRWTGRCVACGAWDSIVEEVAPKNKHTARTQQKE-------P 57 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 V + S+E + R G E DRVLGGG+V GS+ILIGG PG GKSTL+LQ LA Sbjct: 58 PLVMPICGSSVEPVHRLCVGNDELDRVLGGGIVAGSSILIGGEPGIGKSTLMLQVFASLA 117 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 Q LYV+GEES+ Q+ RA RL + + +++ +S+ + A + +VIDSI Sbjct: 118 GQSHSCLYVSGEESVAQIRARATRLNVSEPQIKLVATSSLSSVLNAACADNFAFLVIDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q MH ++ SSPG+V QVR A L AK R + + ++G +TKDG++AGPK LEH +D Sbjct: 178 QTMHDEEIPSSPGTVLQVRMCAHKLIMLAKQRNIGLFLLGQITKDGAIAGPKTLEHLVDT 237 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV-TSGS 298 + +G ++ R LR+ KNRFG NE+GVF M+ GL V +PS +FL + +G+ Sbjct: 238 VLYFEGSNGNQLRILRTIKNRFGPANEMGVFEMSGSGLLPVQDPSMLFLGQSPRKGITGN 297 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 V EG+RP+LVE+Q+L+ ++ +PRR VG + NRLA+++AVL+ + +AD++V Sbjct: 298 VVFAGMEGSRPILVEVQSLIANTYSPSPRRAVVGWDINRLAMVVAVLNARCDMPLADKEV 357 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++++ GG+K+ E ++DLA+ +++SS+ P P V+FGEV L+GEIR V + R+ E Sbjct: 358 YLSIAGGLKICEPASDLAIAASLMSSITRSPTPASTVIFGEVALSGEIRSVANVGPRLRE 417 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A K GF++AI P+ + + +++ V + + +F Sbjct: 418 ACKLGFKQAIAPSGSKKGNSLP-IEVREVAHIRELKGLF 455 >UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteria RepID=RADA_CHLMU Length = 455 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 187/458 (40%), Positives = 277/458 (60%), Gaps = 12/458 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K + C+ECG+ P+W GQC C WNT+ E + +L + Sbjct: 5 KIKTQWACSECGSYSPKWLGQCPGCFQWNTLVEEI--------HSSKLKTSSYPLSSTTP 56 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 L+ + +E R ST K ++R+LGGG V GS L+GG PG GKSTLLLQ + A Q Sbjct: 57 VPLNTVKFQEEIRISTRSKGWNRLLGGGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQG 116 Query: 123 MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM 182 K LYV GEES+ Q ++RA RL + + N+ + ET++E I + P +++IDSIQ++ Sbjct: 117 YKVLYVCGEESVSQTSLRAQRLQISSSNIFLFPETNLEDIKQQISDLAPDILIIDSIQII 176 Query: 183 HMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + S+PGSVAQVRET A L AK + + ++GHVTK G +AGP++LEH +D + Sbjct: 177 FSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLY 236 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMV 302 +G+A + +R +RS KNRFG NEL + +M GL EV NPS FL T+GS+++ Sbjct: 237 FEGNAHTNYRMIRSVKNRFGPTNELLILSMQTDGLHEVENPSGFFLQEKVVETTGSTIIP 296 Query: 303 VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNV 362 + EG+ LLVE+QALV S +NP R G + NR ++LLAVL + +++ DVF+++ Sbjct: 297 IVEGSETLLVEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSI 356 Query: 363 VGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 GG+K+T+ SADL +L++VSSL +R LP++ GE+GL GEIR V + RI E+ Sbjct: 357 AGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIRHVTHIEHRIKESIIM 416 Query: 423 GFRRAIVPAA---NVPKKAPEGMQIFGVKKLSDALSVF 457 GF+ ++P+ +PK+ + + I GVK + DA+ + Sbjct: 417 GFKGIVMPSGQIKGLPKEYLDQIDIIGVKTIKDAVRLL 454 >UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1 Tax=Sorghum bicolor RepID=C5Z4B1_SORBI Length = 673 Score = 463 bits (1191), Expect = e-129, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 269/478 (56%), Gaps = 26/478 (5%) Query: 5 PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVAR-------NERLSGYAGS 57 K ++VC+ CG +W G C C A T+ E ++ A + S Sbjct: 194 EKNSYVCSNCGEGNSQWWGICRHCGAVGTVVEYVAGSNSGGASAEGSHSHHIGRSWIPQK 253 Query: 58 AGVAKVQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 A Q L ++ + +P + + E RVLGGG+VPGS +L+GG+PG GKS+L Sbjct: 254 AKEMVPQSLPEVNKGVDQAEWRIPLWGSFGMEISRVLGGGIVPGSLVLVGGDPGVGKSSL 313 Query: 112 LLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLI 165 +LQ + + K +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 314 MLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGTDIEDILDK 373 Query: 166 AEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225 + PK ++IDSIQ +++ S G+++QV+E + L RFAK + + ++GHVTK G Sbjct: 374 IQPLSPKALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFLIGHVTKTG 433 Query: 226 SLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 +AGP++LEH +D + ++G+ S R LRS KNRFG+ +ELGVF M E GL+ V NPS Sbjct: 434 DIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSTDELGVFEMAEFGLQAVLNPSQ 493 Query: 286 IFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILL 342 +FL+ D E+ +G +V V+ +G+R +E+QAL + + VG+ +R +++ Sbjct: 494 MFLTEHDSDSEILAGLAVAVILDGSRTFALEVQALCVSGSHRSGQ--VVGIPPSRADVII 551 Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +VL + G+++ D +F+NVV G K+TET+ DLA+ ++ SS + P+P D+ GEVGL Sbjct: 552 SVLMKQAGVKLQDSTIFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAFIGEVGL 611 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVP--KKAPEGMQIFGVKKLSDALSVFD 458 GE+R VP +R+ AK G+++ +VP + + ++I L ++ Sbjct: 612 GGELRAVPRMDKRVMAIAKLGYKKCVVPKTSEKLLRPLDLDIEILPCSNLKQVINTVF 669 >UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID=Q1IZ25_DEIGD Length = 449 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 201/458 (43%), Positives = 269/458 (58%), Gaps = 15/458 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK +VC CG + G+C C AWN+ E AA P R GY Sbjct: 1 MAKVT-TRYVCTSCGYQSAKPLGRCPNCQAWNSFEEELPAAVPGKTRMGGSGGYG-GVVG 58 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K+ LS + E PR +G E DRVLGGG+V GS LIGG PG GKSTLLLQ +LA Sbjct: 59 GKLTPLSTVGRREEPRLPSGIPELDRVLGGGLVAGSVTLIGGEPGIGKSTLLLQVADRLA 118 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + LYV GEESL+Q+ +RA RL + + + + +T E I + +E +P L ++DSI Sbjct: 119 RNGQTVLYVAGEESLEQIRLRADRLNVTAE-IQLTRDTRAEHIAALMQEHRPALCIVDSI 177 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + + + + +PG VAQVRE A LTR AK G A V+VGHVTK+G++AGPKV+EH +D Sbjct: 178 QTVTV-EAEGAPGGVAQVREGTALLTRAAKETGTATVLVGHVTKEGTVAGPKVMEHIVDT 236 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 +V L+ FR LRS KNRFG ELGVF M +GL V NPSA FL+ GS Sbjct: 237 TVFLETV--GAFRLLRSVKNRFGQAGELGVFEMRGEGLVAVENPSAAFLAERPVGVPGSV 294 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 V +G RP+L+E+QAL + NPRRV VGL+ R+ ++LAVL R L + DV+ Sbjct: 295 VAATIDGQRPMLLEVQALAAKTPYPNPRRVVVGLDPRRVDVVLAVLERRLDLTLGGLDVY 354 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VN+ GG+KV + DL + LA+ S++ R LP ++ VFGEVGLAGE+R R EA Sbjct: 355 VNLAGGLKVPDPGLDLPVALAVYSAVVGRALPGNVAVFGEVGLAGEVRSTQGALRRAEEA 414 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 A+ G+R IVP ++ GV+ + +A+ + Sbjct: 415 ARAGYRSLIVPPGLEGRE--------GVRSVEEAVGLV 444 >UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponema RepID=RADA_TREPA Length = 455 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 165/459 (35%), Positives = 254/459 (55%), Gaps = 10/459 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK +RAF C CG +P+W G+C C WN+ E +P ++ + + S+ Sbjct: 1 MAKKTERAFSCVGCGYVHPKWLGRCPECGEWNSFEE-----TPSLSSGDVRAVKKASSSP 55 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + L + ++ R S G EFDRVLGGG V SAI+IGG PG GKSTLLLQ A Sbjct: 56 VQAFPLCAVRAQDAQRISCGIAEFDRVLGGGAVRRSAIMIGGEPGIGKSTLLLQIAA--A 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 LYV+GEES Q+ RA RL +P N+ +L T +E + + P +++DSIQ Sbjct: 114 CGKSVLYVSGEESPGQIRGRADRLNIPIQNIELLCATRVEDVERVLNTRCPTFVIVDSIQ 173 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 + + + P ++ Q++ A L + K R + HVTKDG++AGPKV+EH +D Sbjct: 174 TVFSPEAGAIPMTINQLKYCANELIAWVKERDSVLFFTAHVTKDGNIAGPKVVEHMVDTV 233 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS-GSS 299 + + + + R LR+ KNRFG+V+ELG+F M E GL V + + F+S + GS+ Sbjct: 234 ISFERNEE-DIRFLRALKNRFGSVDELGIFTMGENGLSAVQDTAGFFISTRQGMFPVGSA 292 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG+R +VEIQAL + + R + ++ R++ + AV+ + GL+ +DQD++ Sbjct: 293 TVPVCEGSRVFMVEIQALTVPAKSSVTRVFSDRIDSARVSRVAAVIEKRVGLKFSDQDIY 352 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 VNV GG+++ E + D+AL +A+ S+ ++ P+ + GEV L+GEIRPV + R+ A Sbjct: 353 VNVAGGIRLYEPAVDVALAMALYSARQNTPVKTNAAFIGEVSLSGEIRPVRRLKTRLKTA 412 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 GF VP V P + V L+ ++ Sbjct: 413 YGLGFSTIYVPIG-VEHDTPPPYTLRVVGTLAQTIAEIF 450 >UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales RepID=D0L455_GORB4 Length = 461 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 189/452 (41%), Positives = 269/452 (59%), Gaps = 10/452 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK PK F C CG +W G+C C W ++ EV S A A Sbjct: 1 MAK-PKSTFRCTACGRQVAKWVGRCPDCGEWGSVDEV------TTLFAAGTSATAAVAPS 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + +++++I TG EFDRVLG GVVPGS IL+ G PG GKSTLLL+T+ A Sbjct: 54 SPARRITEIDAASSAAVPTGIGEFDRVLGRGVVPGSVILLAGEPGVGKSTLLLETVKHWA 113 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 LY+TGEES QV MRA R G +N+ + +E+ + I + +P LM++DS+ Sbjct: 114 GLGRTALYITGEESAGQVRMRAERTGAVHENVYLAAESDLATILGQVDAVRPSLMIVDSV 173 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + G V Q+R L AK RG+A+++VGHVTKDG++AGP+ LEH +D Sbjct: 174 QTVVATGADGVTGGVTQIRAVTTALVSLAKNRGIAVILVGHVTKDGAVAGPRSLEHLVDV 233 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD S R +R KNRFG +E+G F + G+ +V++PS IFL + D SG++ Sbjct: 234 VLSFEGDRHSTLRMVRGIKNRFGPADEVGCFEQRDDGIHQVTDPSGIFLHQRDSDVSGTA 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQ-MADQDV 358 MV +G RPL+ E+Q+L + S MA PRR G++ R+A++LAVL GL+ +A ++ Sbjct: 294 TMVTMDGKRPLVGEVQSLANGSQMATPRRAVSGMDSARVAMVLAVLQSRMGLEQIAKNEI 353 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +V VGG++VTE +ADLA+ LA+ S++ RP+P + GEVGLAGE+R V + RI+E Sbjct: 354 YVATVGGMRVTEPAADLAIALAVHSAMTKRPVPATTIAIGEVGLAGEVRRVSAVSRRIAE 413 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL 450 A + GFR AI+P +K P+GM+I V L Sbjct: 414 AQRLGFRHAIIP-GGTDEKLPKGMRITRVGDL 444 >UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQ08_9SPIO Length = 464 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 176/466 (37%), Positives = 258/466 (55%), Gaps = 13/466 (2%) Query: 1 MAKAPK--RAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSA 58 MAK R F C+ CG P+W G+C C WNT E A + Sbjct: 1 MAKKKAGGRIFRCSSCGYSQPKWLGRCPGCGEWNTFEEQFQEADFTPGFASSAVSVRQT- 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 A L + + + R +TG EFDRVLGGG V SA+LIGG PG GKSTLL+Q Sbjct: 60 DEAHPVPLEQVEVHDTARITTGISEFDRVLGGGAVKRSAVLIGGEPGIGKSTLLMQAAA- 118 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 A +TLYV+GEES Q+ RA RLG+P N+ +L S+E I + P +++IDS Sbjct: 119 -AAGQRTLYVSGEESAGQIRGRADRLGVPLKNIELLCTNSVENIEKVLNNINPLVVIIDS 177 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q + + PG++ Q++ A L ++ K R + + HVTK+G +AGPKVLEH +D Sbjct: 178 VQTLFSPQAGTIPGTINQLKYCANELVQWVKERDAVLFLTAHVTKEGIIAGPKVLEHIVD 237 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + + + D R LR+ KNRFG+V+ELG+F M E+GL V +P+A+F+ + Sbjct: 238 TVISFERNED-DVRFLRALKNRFGSVDELGIFRMDEKGLAAVQDPAALFIIQRQGELPAG 296 Query: 299 SVMV-VWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 S V V+EG+R +VEIQAL + R + ++ R++ + AVL + GL+ +DQD Sbjct: 297 SATVPVFEGSRVFMVEIQALTVPAKGTMTRVFSDKVDSARVSRVAAVLEKRIGLRFSDQD 356 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 +++NV GG+++ E + DLAL LA+ S+ D P ++ GE+ LAGEIRPV + I Sbjct: 357 IYINVAGGIRLREPAIDLALALALYSARTDIPAHKNEAFIGELSLAGEIRPVRRLKPLIK 416 Query: 418 EAAKHGFRRAIVPAAN----VPKKAPEGMQIFGVKKLSDALSVFDD 459 A GF + VPAA P+ A +G + V+ L++ + Sbjct: 417 TAQSLGFTQLYVPAAAGDGDEPEPAIQG--VSRVENLAETIKQAFG 460 >UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales RepID=Q3AH17_SYNSC Length = 465 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 199/453 (43%), Positives = 281/453 (62%), Gaps = 5/453 (1%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 FVC CGA ++ G+C C +WN++ E A R +A + Sbjct: 3 KSTAVFVCQVCGARARQFFGRCPECASWNSLVEQSQPADDGRRRRSAPDPEVAAAP-RRS 61 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 ++ + + L R +TG EFDRVLGGG+VPGS +L+GG+PG GKSTLLLQ+ +A Sbjct: 62 TAMASLEDQPLQRLATGSAEFDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQSASAMAAGA 121 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 LYV+ EES QQV +R RL L +L+ET +E + E +P + +IDSIQ +H Sbjct: 122 SVLYVSAEESAQQVKLRWQRLAGGASELQLLAETDLELVLEELEALRPAVAIIDSIQALH 181 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 A++ S+PGSV QVRE AA L R AK + +++++VGHVTK+G LAGPKVLEH +D + Sbjct: 182 DANLTSAPGSVGQVRECAAALQRLAKRQNISLLLVGHVTKEGMLAGPKVLEHLVDAVLTF 241 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD + R LR+ KNRFGA +ELG+F M GL EV NPS +FLS D SG + +V Sbjct: 242 EGDRFASHRLLRAVKNRFGATHELGLFEMQSGGLAEVGNPSELFLS--DARASGVATIVA 299 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EGTR L+V++QALV+ + A+PRR A G+ NRL +LAVL +H GL ++ D ++ V Sbjct: 300 CEGTRSLVVDLQALVNVTSYASPRRTATGIGTNRLHQILAVLEKHMGLPLSRFDCYLAVA 359 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG++V E +ADL + A+V+S RD LP V+ GE+GL G++RPV + RI EAA+ G Sbjct: 360 GGLEVEEPAADLGVAAAVVASFRDLTLPAGTVLIGELGLGGQLRPVGQLELRIQEAARLG 419 Query: 424 FRRAIVPAANVPKKAPEGMQ--IFGVKKLSDAL 454 F+RA+VP + G+ + +++AL Sbjct: 420 FQRAVVPRGSGLGDLASGLDLALLEADSVTEAL 452 >UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4J073_MAIZE Length = 641 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 168/479 (35%), Positives = 271/479 (56%), Gaps = 26/479 (5%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA-------RNERLSGYAG 56 + ++VC+ CG +W G+C C+A T+ + A P + S Sbjct: 161 KERSSYVCSNCGEGDSQWWGKCRHCNAMGTVDKYVGVAGPESGGVDVEWSHHIGRSWMPQ 220 Query: 57 SAGVAKVQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKST 110 A Q L ++ + +P + + E RVLGGG+VPGS IL+GG+PG GKS+ Sbjct: 221 KAKEVVPQSLQEVNKGVDQAQWRIPLWGSFGMEISRVLGGGIVPGSLILVGGDPGVGKSS 280 Query: 111 LLLQTLCKLAQQMK------TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICL 164 L+LQ + + K +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 281 LMLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGTDIEDILD 340 Query: 165 IAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKD 224 + P+ ++IDSIQ +++ S G+++QV+E + L RFAK + + ++GHVTK Sbjct: 341 KIQPLSPRALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFLIGHVTKT 400 Query: 225 GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPS 284 G +AGP++LEH +D + ++G+ S R LRS KNRFG+ +ELGVF M E GL+ V NPS Sbjct: 401 GDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSADELGVFEMAEFGLQAVLNPS 460 Query: 285 AIFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL 341 +FL+ D E+ +G +V V+ +G+R +E+QAL + + VG+ Q+R ++ Sbjct: 461 QMFLTEHDSDSEIMAGLAVAVILDGSRTFALEVQALCVSGYHRSGQ--VVGIPQSRADVI 518 Query: 342 LAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 ++VL + GL++ D VF+NVV G K+TET+ DLA+ ++ SS + P+P D+ GEVG Sbjct: 519 ISVLIKQAGLKLQDNIVFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAFIGEVG 578 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP--KKAPEGMQIFGVKKLSDALSVFD 458 L GE+R VP +R+ +K G+++ +VP + + ++I L ++ Sbjct: 579 LGGELRTVPRMDKRVIAISKLGYKKCVVPKTSEKLLRPLDIDIEILPCSNLKQLINTVF 637 >UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilonproteobacteria RepID=RADA_HELPJ Length = 448 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 179/453 (39%), Positives = 265/453 (58%), Gaps = 8/453 (1%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK F C CG P+W G+C C+AW + E+ + + V Sbjct: 1 MAKKT-SLFECQHCGFTSPKWLGKCVQCNAWESFIELNQ-----TQKEVLNALKKPLPQV 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K +++I EE+ +FS+ E D VLGGG+ G L+GG+PG GKSTLLL+ LA Sbjct: 55 QKSVSIAEIEHEEVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLA 114 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + Q K LYV+GEESL Q+ MRA RL + L +L+E + I E E VIDSI Sbjct: 115 KNQQKVLYVSGEESLSQIKMRATRLDCIEEELYLLNEINWPVIKANMESENYFACVIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ ++ S+PGS++QVRE L R AKTR +AI ++GH+TK+GS+AGP+VLEH +D Sbjct: 175 QTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDS 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD R LRS KNRFG +E+G+F M EQGL S++F S+ +E GS+ Sbjct: 235 VLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSK-EEPMEGSA 293 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + + EG+R L++EIQALV P+R+A G + NRL +L+A+L + + + DVF Sbjct: 294 ITITLEGSRALILEIQALVSECSFGAPKRLANGFDTNRLNMLIALLEKKLEIPLNRHDVF 353 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +NV GG+K++E + DLA++ +++SS ++R + GEV L G I P+ R+ E Sbjct: 354 INVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRILEAPNLNARLKEM 413 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSD 452 +GF +AI+P K + + + V K+ + Sbjct: 414 ENYGFLKAILPKKPSQKTSIKCYEANVVGKIVE 446 >UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria RepID=Q0BVC8_GRABC Length = 460 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 203/461 (44%), Positives = 286/461 (62%), Gaps = 15/461 (3%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + +VC CGA YP+W G+C AC WN+I E +++P+ R + Sbjct: 3 KDRARYVCQACGAVYPKWAGRCEACGEWNSIVEEAPSSAPVRVTPGRRLAFVSL------ 56 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 S PR +TG +E DRVLGGG+VPGS IL+GG+PG GKSTL+LQ LA+ Sbjct: 57 -PASGADAAPPPRIATGIEELDRVLGGGLVPGSVILVGGDPGIGKSTLMLQAAAALARAG 115 Query: 124 KTL-YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-EEQPKLMVIDSIQV 181 YV+GEE+++QV +RA RL L L + + + I E L+VIDSIQ Sbjct: 116 GRALYVSGEEAVEQVRLRARRLHLADAPLELAASGHVRDIAATLETARDAALVVIDSIQT 175 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 M + + S+PG+VAQVR L R AK+ G A+V+VGHVTK+G++AGP+VLEH +D + Sbjct: 176 MWLDSLDSAPGTVAQVRACGFELIRLAKSVGFALVLVGHVTKEGAIAGPRVLEHMVDAVL 235 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 +GD +FR LR KNRFGA +E+GVF MT+ GL EV+NPSA+FL+ +GS+V Sbjct: 236 YFEGDRGHQFRILRGVKNRFGATDEIGVFEMTDLGLSEVANPSALFLAERRGNIAGSAVF 295 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 EG+RP+L+E+QAL+ + +PRR VG + RL +LLAVL GL++A DV++N Sbjct: 296 AGMEGSRPVLLEVQALLAPNAGGSPRRAVVGWDSARLGMLLAVLEARCGLKLAQNDVYLN 355 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 + GG+++TE +ADLA+ A++S+ ++P+ + V FGEVGL+GEIR VP + R+ EAAK Sbjct: 356 IAGGLRITEPAADLAVAAALISAATEQPVAANEVFFGEVGLSGEIRQVPQTEARLKEAAK 415 Query: 422 HGFRRAIVPAA-----NVPKKAPEGMQIFGVKKLSDALSVF 457 GF A P N P PEG+++ + LSD + F Sbjct: 416 LGFEAACRPRRVARGKNRPSP-PEGLKLEEIGHLSDLVRRF 455 >UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chromatophora RepID=B1X477_PAUCH Length = 470 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 187/468 (39%), Positives = 277/468 (59%), Gaps = 20/468 (4%) Query: 7 RAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAK-VQK 65 ++C CGA ++ G+C C+ W++ AS R +L +AK + Sbjct: 6 TTYICQNCGAQSRQFFGRCPRCNNWDSFVTQ---ASSSNHRATKLYEEISDLPIAKYSKP 62 Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 + + + R S+G+ EFDRVLGGG VPGS +L+GG PG GKSTLLLQ+ +++ Sbjct: 63 IDQVKELFVERLSSGYNEFDRVLGGGFVPGSLVLVGGEPGIGKSTLLLQSAMIMSRYSSI 122 Query: 126 LYVTGEESLQQVAMRAHRLGL-----------PTDNLNMLSETSIEQICLIAEEEQPKLM 174 LYV+ EES QQV +R RL T L++++ET +E I + +P + Sbjct: 123 LYVSAEESAQQVKLRWRRLNECKNLTNFHQENKTSQLHLMAETELEIILQELQSFRPAVA 182 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDSIQ ++ + + S+PGS++QVRE + L + AK +G AI++VGHVTK+G+ AGPKVLE Sbjct: 183 VIDSIQAIYTSGLSSAPGSLSQVRECSLALQKLAKQQGTAILLVGHVTKEGTFAGPKVLE 242 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +D + +GD R LR+ KNRFGA ELGVF M QGL E++NP IFL ++ Sbjct: 243 HLVDAVITFEGDRFGNNRLLRAIKNRFGANYELGVFEMGNQGLVELTNPFEIFL-GRNKA 301 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 T+G + +V +EGTRPLLVE+QAL++ + NPRR+ +G+ NRL +LAVL +H G +++ Sbjct: 302 TTGVATIVAYEGTRPLLVEVQALINTANYGNPRRITIGISTNRLHQILAVLEKHMGFRLS 361 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D ++ V GGV V E +ADL A+V+S LP V GE+GL+G++RPV Sbjct: 362 SFDCYLAVAGGVTVQEPAADLGAAAAIVASYNTLILPPKTVFIGELGLSGKLRPVTQIPL 421 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQI--FGVKKLSDALSVFDDL 460 R+ E A+ GF + ++P + + I V+ + +A+ L Sbjct: 422 RLRECARLGFDKVVMPKIEGLENIAIDLNISLLQVETVMEAI--IFGL 467 >UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobacteria RepID=Q215U8_RHOPB Length = 503 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 211/457 (46%), Positives = 289/457 (63%), Gaps = 14/457 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVR---LAASPMVARNERLSGYAGS 57 MAKA FVC CGA Y RWQG+C +C WNT+ E A+ P R++R Sbjct: 17 MAKATLS-FVCQNCGAAYNRWQGKCESCGEWNTLAEEDLTGAASMPASIRSKRRGRAFKL 75 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 + + E+ PR S+G E DRV GGG V GS +L+GG+PG GKSTLL Q Sbjct: 76 ESLTG-------TSEQAPRLSSGLGELDRVTGGGFVRGSVLLVGGDPGIGKSTLLTQATS 128 Query: 118 KLAQ-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMV 175 +A+ + +Y++GEE++ QV +RA RLGL + + +ETS+E I E P+L+V Sbjct: 129 LMAREGHRIVYISGEEAVAQVRLRATRLGLADAAVQLAAETSVEDIITTLSEGAVPRLIV 188 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 IDSIQ M V+S+PG+V QVR +A L RFAK G AI++VGHVTKDG +AGP+V+EH Sbjct: 189 IDSIQTMWTDTVESAPGTVTQVRASAQALIRFAKKSGAAIILVGHVTKDGQIAGPRVVEH 248 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +G+ +FR LR+ KNRFG +E+GVF MT GLREV+NPS +FLS D + Sbjct: 249 MVDAVLSFEGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVANPSELFLSERDLGS 308 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 G++V EGTRP+LVE+QALV + + PRR VG + +RL+++LAVL H G++++ Sbjct: 309 PGTAVFAGMEGTRPVLVELQALVVPTTLGTPRRAVVGWDSSRLSMVLAVLEAHCGVKLSG 368 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 DV+ NV GG+++ E +ADLA A+VSSL + PLP D V FGE+ L+G +RPV R Sbjct: 369 YDVYFNVAGGLRINEPAADLAAAAALVSSLANAPLPTDAVYFGEISLSGAVRPVAQSSAR 428 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLS 451 + EAAK GF RAI+P + G+ + V LS Sbjct: 429 LKEAAKLGFARAILPETARGDAGGDAGLTLNTVGGLS 465 >UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibrionales RepID=B8DKJ9_DESVM Length = 492 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 181/453 (39%), Positives = 262/453 (57%), Gaps = 11/453 (2%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + +VC CGA P+W+GQC AC WNT+ L +P + G + ++ Sbjct: 2 KLRETYVCTACGARAPQWRGQCPACKEWNTLE---LTVAPREGKAGARPGASSVGAQSRA 58 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 Q L D++ F +G DRVLG G+VPG+AIL+GG PG GKSTLLLQ +A Sbjct: 59 QPLKDVADHGAEPFGSGLDALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGAVAAAG 118 Query: 124 KT-LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-EEQPKLMVIDSIQV 181 + LY++GEESL Q+ RA RLG+ D L ++ T ++ + E E P L+++DS+Q Sbjct: 119 RGVLYLSGEESLPQLKARAARLGVLHDELMAVATTRLDDVLPHLEGPEAPALLIVDSVQT 178 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSV 241 + + PG+V+QVR + + K G +++VGHVTKDG+LAGP++LEH +D + Sbjct: 179 VSSDRAEGLPGNVSQVRAVSTEIVEACKRSGTTVLLVGHVTKDGALAGPRLLEHLVDTVI 238 Query: 242 LLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVM 301 ++GD FR LR KNRFG EL VF M EQG+ V +PS FL D SG++++ Sbjct: 239 SIEGDRRQMFRLLRVLKNRFGPNQELLVFRMVEQGMEVVEDPSTFFLGARDPALSGTALV 298 Query: 302 VVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVN 361 + +G RPL VE+QALV S +A PRR +G + NRL +LLAVL + L D++ Sbjct: 299 MAVDGQRPLAVEVQALVTRSYLAIPRRTGLGFDVNRLHLLLAVLEKRLRLNFGQVDIYAK 358 Query: 362 VVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 + GG+K+ + DL L+ A++SS D PLP+ V +GEV L G++RPV + R +A + Sbjct: 359 IGGGMKLQDPGMDLGLVAAVLSSFYDLPLPERAVFWGEVDLNGQVRPVAAHTIRRDQARR 418 Query: 422 HGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454 G+ + PA + + P V L DAL Sbjct: 419 LGYTPILHPADDAARGVPT------VAALQDAL 445 >UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9H8_THEAS Length = 450 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 179/463 (38%), Positives = 259/463 (55%), Gaps = 17/463 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA + C+ C G+C +C +W T+ + A S G+ Sbjct: 1 MAPKTSSRYRCSNCDFVSLTLVGRCPSCGSWGTMEREEILP----------VSSAPSGGL 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 K+ L + E R +G + D VLGGG +PG +L+GG PG GKSTLLLQ+ +A Sbjct: 51 PKLVTLEEAPPER--RILSGLPDLDLVLGGGWLPGGVVLLGGEPGVGKSTLLLQSCSAVA 108 Query: 121 QQM-KTLYVTGEESLQQVAMRAHRLGLPT-DNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 Q K +YV+GEE+ Q+A RA RL L +N +L + + AE +L+V+DS Sbjct: 109 QGGTKVVYVSGEETPSQIASRAKRLQLTLGENFKVLVCDDVMKAIGAAEAHGAELLVVDS 168 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q + D PGS QVR A + FAK G + VM+GH+TK G++AGPK LEH +D Sbjct: 169 VQALRHPDASGWPGSPNQVRAVAENVIGFAKRTGASAVMIGHITKQGAIAGPKALEHLVD 228 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 ++ G+ SR R LR+ KNRFG ELG+F M E+GL VS+PSA+F DE +G Sbjct: 229 VVLVFFGERTSRNRLLRAEKNRFGGTEELGIFQMCERGLVPVSDPSALFWGE-DEGVAGV 287 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ V EG+RP+L EIQAL S P+R + G+E NRL +L+AV+ R G+ + DV Sbjct: 288 AMGVPMEGSRPILSEIQALTCQSPYPYPKRASKGIELNRLQLLMAVMDRRCGMSLRTSDV 347 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++NV GG+ + + + DLA+ A+ SS+ D PL GEVGLAGE+RPVP +R+ E Sbjct: 348 YLNVAGGLAIQDPAVDLAVCAAIASSVEDVPLDMKACFIGEVGLAGEVRPVPRMAQRVRE 407 Query: 419 AAKHGFRRAIVPAANVPKKAPEGM--QIFGVKKLSDALSVFDD 459 A + GFRR +V A ++ + I V+ + + + + Sbjct: 408 AERFGFRRFVVSAKDLKADGLDCSRDDIIPVRNVREMVKLVLG 450 >UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID=Q76B91_ORYSJ Length = 619 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 170/478 (35%), Positives = 269/478 (56%), Gaps = 24/478 (5%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 A + ++VC CG + +W G C C A T+T+ + P + + + + Sbjct: 141 AGKERASYVCGNCGEGFSQWWGTCRHCEAMGTLTKYVPGSDPGASVGSHHAFRSWIPQKS 200 Query: 62 K---VQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 K Q L + S +P E RVLGGGVVPGS IL+GG+PG GKS+L+ Sbjct: 201 KEMVPQSLQQVTKGVDQSEWRIPLSGNFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLI 260 Query: 113 LQTLC----KLAQQMKT--LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIA 166 LQ + + +YV+GEES++Q+ RA R+ + + NL + S T IE I Sbjct: 261 LQLASIMSENIGAGESSAIVYVSGEESIEQIGNRADRMSIKSRNLYLYSSTDIEDILDKI 320 Query: 167 EEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGS 226 + P+ ++IDSIQ +++ S G++ QV+E + L RFAK + ++++GHVTK G Sbjct: 321 QPLSPRALIIDSIQTVYLRGFAGSAGNMTQVKECTSALLRFAKLTNIPVILIGHVTKTGD 380 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 +AGP++LEH +D + ++G+ R LRS KNRFG+ +ELGVF M+ GL+ V NP+ + Sbjct: 381 IAGPRLLEHIVDVVLYMEGERCLSHRLLRSVKNRFGSTDELGVFEMSGYGLQPVLNPTEM 440 Query: 287 FLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRV-AVGLEQNRLAILL 342 FL+ D E+ +G +V VV +G+R +E+QAL +PR VG+ +NR I++ Sbjct: 441 FLTEHDLDSEILAGLAVAVVLDGSRTFAIEVQALCV---SGSPRNGEVVGIPRNRADIII 497 Query: 343 AVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 +VL + GL++ D VF+NVV G +TET+ DLA+ ++ SS + P+P D+ GEVGL Sbjct: 498 SVLMKQAGLKLQDNAVFLNVVSGFMLTETAGDLAIAASICSSFLEYPIPNDIAFIGEVGL 557 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVP--KKAPEGMQIFGVKKLSDALSVFD 458 GE+R VP +R+ AK G+++ +VP + + ++I L + ++ Sbjct: 558 GGELRTVPRMDKRVLAIAKLGYKKCVVPKTSEKLLRPLNLELEILPCSNLKEVINTVF 615 >UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thaliana RepID=Q0WVW9_ARATH Length = 587 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 172/492 (34%), Positives = 269/492 (54%), Gaps = 35/492 (7%) Query: 1 MAK----APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA---------- 46 M K K +VC CG +W G C ACH T+ + + Sbjct: 97 MNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLG 156 Query: 47 -RNERLSGYAGSAGVAKVQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 + + + +L+D+ + E RVLGGG+ PGS IL Sbjct: 157 FTEGKGLSWLPEQATVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLIL 216 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQM------KTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 IGG+PG GKSTLLLQ +A+ LY++GEES++Q+ RA R+ + T+ L + Sbjct: 217 IGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYL 276 Query: 154 LSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGV 213 S + ++ I A P+ ++IDSIQ +++ DV S G + QV+E + L RFAK + Sbjct: 277 FSSSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNI 336 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 + +VGHVTK G +AGP+VLEH +D + L+G+ S +R LRS KNRFG+ +ELGVF M Sbjct: 337 PVFLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMA 396 Query: 274 EQGLREVSNPSAIFLSRGDEVT---SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVA 330 GL VSNPS I+LS+ + + +G +V VV +G+R L+E+QAL + R Sbjct: 397 NSGLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSP--GSTVSRHV 454 Query: 331 VGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPL 390 G++ +R +++AVL + GL++ + +F+NV G+ ++ET+ DLA+ A+ SS + P+ Sbjct: 455 NGVQASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPI 514 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA---ANVPKKAPEGMQIFGV 447 P + GE+GL GE+R VP ++R+S AK GF + +VP ++ + + ++I G Sbjct: 515 PHGVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGC 574 Query: 448 KKLSDALSVFDD 459 K L + ++ Sbjct: 575 KNLKELINAVFK 586 >UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinobacteria (class) RepID=RADA_MYCBO Length = 480 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 173/463 (37%), Positives = 262/463 (56%), Gaps = 12/463 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA A + + C+EC +W G+C C W T+ EV + ++ R A Sbjct: 1 MANA-RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRR------SVAPA 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + +S + TG E DRVLGGG+VPGS L+ G+PG GKSTLLL+ + A Sbjct: 54 SGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWA 113 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLG--LPTDNLNMLSETSIEQICLIAEEEQPKLMVID 177 Q + LYV+GEES Q+ +RA R+G + + + +++ + + E QP L+++D Sbjct: 114 QSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVD 173 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 S+Q M ++ G V QVR A LT AK VA+++VGHVTKDG++AGP+ LEH + Sbjct: 174 SVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLV 233 Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D + +GD + R +R KNRFGA +E+G F + + G+ + +PS +FL + +G Sbjct: 234 DVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAG 293 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 +++ V +G RPL+ E+QAL+ +PRR G+ Q R A++ AVL +H L +A D Sbjct: 294 TAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVND 353 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 ++++ VGG+++TE SADLA+ +A+ S+ + PLP V+ GEVGLAG+IR V R+S Sbjct: 354 IYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLS 413 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460 EAA+ GF A+ P GM + AL D+ Sbjct: 414 EAARQGFTIAL--VPPSDDPVPPGMHALRASTIVAALQYMVDI 454 >UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae RepID=B4SGR3_PELPB Length = 457 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 193/470 (41%), Positives = 282/470 (60%), Gaps = 28/470 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA++ ++C+ CGA ++QG+C C +W T+ E R+ R+ + GV Sbjct: 1 MARSS-TRYICSNCGAISLKYQGKCFECQSWGTLQESRVEPEQKKQRDG------STRGV 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A ++ L D E R TG E DRVLGGG++ GSA+L+GG PG GKSTL+LQ +LA Sbjct: 54 AVMENLHDSVPSEFQRVMTGIGELDRVLGGGLMQGSAVLVGGEPGIGKSTLMLQLAPRLA 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K LY++GEES Q+ RA RL + NL ++ E ++E I I E+P L++IDSIQ Sbjct: 114 P-AKVLYISGEESPNQIRERAQRLSIKAPNLWLIPEVNLESILAIIAHEKPALVIIDSIQ 172 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 +H + QSS G++ Q+RE AA L R AK + V ++++GH+TK+G+LAGPK LEH +D Sbjct: 173 TVHSDEYQSSAGTITQIRECAATLIRAAKQQNVILMIIGHITKEGALAGPKALEHMVDTV 232 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGV--------FAMTEQGLREVSNPSAIFLSRGD 292 + +G+ R+R +RS KNRFG+ NE+GV EVSNPS F+S Sbjct: 233 LQFEGEGYQRYRIIRSVKNRFGSTNEIGVFRMDESGL--------EEVSNPSEFFISGRR 284 Query: 293 EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQ 352 G+S++ EGTR LLVE+QALV + + P+R++ G + R++I+LAVL ++ Sbjct: 285 TDVPGNSILAAIEGTRALLVEVQALVSKTNYSMPQRISTGFDLKRMSIILAVLENRLRIE 344 Query: 353 MADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSG 412 QDVFV + GG+K+ E +ADLA+ A+ S L +RP+ V GE+GLAGE+R + Sbjct: 345 TWGQDVFVKIAGGLKLAEPAADLAIAAAIASGLMNRPVDPATVCCGEIGLAGELRAISDS 404 Query: 413 QERISEAAKHGFRRAIVPAANVPKKAPE----GMQIFGVKKLSDALSVFD 458 + RI EAA GF++ ++P AN + P + I G K L +AL + Sbjct: 405 ERRIREAAHLGFKQIVLPEANTRELKPSLKNLPIIITGCKTLQNALDELN 454 >UniRef50_B7GN99 DNA repair protein radA n=20 Tax=Bifidobacteriaceae RepID=B7GN99_BIFLI Length = 512 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 178/510 (34%), Positives = 272/510 (53%), Gaps = 55/510 (10%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ +VC+ECG + P+W G+C C W T+ E A +R + + V Sbjct: 1 MAKSS-VQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSV 59 Query: 61 -------AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 + + ++++ E + R TGF EFDRVLGGGVVPGS LI G PG GKSTLLL Sbjct: 60 TVANNARSAARPITEVGTESVERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLL 119 Query: 114 QTLCKLAQ----------------------------------------QMKTLYVTGEES 133 QT +A+ LY++GEES Sbjct: 120 QTAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQDNTASTHANTVLYISGEES 179 Query: 134 LQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGS 193 QV +RA R+ NL + S T + + + E+ +P L ++DS Q + +V G Sbjct: 180 QAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGG 239 Query: 194 VAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRT 253 QVRE A+ L AKT + + +VGHVTKDGS+AGP+ LEH +D +GD+++ R Sbjct: 240 STQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRM 299 Query: 254 LRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG------SSVMVVWEGT 307 LR+ KNRFG +E+G F M+ +G+ EV++P+ +FLS + + V +G Sbjct: 300 LRAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGH 359 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVK 367 R L +E+QALV S++ PRR G++ +R+A+L+AVL+RH L + D++++ + G + Sbjct: 360 RSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQ 419 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 E +DLA++ A+ S+ +P+ + GE+ L G++RPVP + R+ EAA+ GF A Sbjct: 420 AKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTA 479 Query: 428 IVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 ++P P EG+++ LSDAL Sbjct: 480 VIPPLRKP-VHVEGLRLVESNTLSDALDAL 508 >UniRef50_C7I4G6 DNA repair protein radA n=3 Tax=Bacteria RepID=C7I4G6_THIIN Length = 520 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 248/520 (47%), Positives = 324/520 (62%), Gaps = 61/520 (11%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERL-------SG 53 MAK P+ ++C+ECG +WQGQC C AWNT+ E ++ R +G Sbjct: 1 MAK-PQTVYICSECGGKSAKWQGQCPHCQAWNTLVETAERSTDAARPGARHGAAAAQFAG 59 Query: 54 YAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113 G + L+++ E ++G E DRVLGGG+VPG +L+GG+PG GKSTLLL Sbjct: 60 RGGLTAASGPVLLTEVQAERHAHRTSGIDELDRVLGGGLVPGGVLLLGGDPGIGKSTLLL 119 Query: 114 QTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE---- 169 Q L L+ ++ LY++GEES QVA+RA RLGL + +++ET +E + Sbjct: 120 QVLANLSAELPVLYISGEESAAQVALRAQRLGLKDAPVRLMAETQLEVMLDELARGPGAG 179 Query: 170 ----------------------------------------------QPKLMVIDSIQVMH 183 + VIDSIQ ++ Sbjct: 180 PPQGGRFPLPTSPTERGRSNHSLPTGGEGRGGDALLGGQRANANVGAYSIAVIDSIQTVY 239 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 + S+PGSV+QVRE AA LTR AK G+ +V+VGHVTK+G+LAGP+VLEH +D + Sbjct: 240 TEALSSAPGSVSQVRECAAQLTRAAKASGITLVLVGHVTKEGALAGPRVLEHMVDTVLYF 299 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD SRFR +R+ KNRFGAVNELGVFAMTE GL+ VSNPSAIFLS E G+ V+ Sbjct: 300 EGDTQSRFRLIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLSTHAEPVPGTCVLAT 359 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EGTRPLLVE+QALVD++ +PRR++VGL+ RLA+LLAVLHRH G+ DQDVFVN V Sbjct: 360 LEGTRPLLVEVQALVDNAAAPSPRRLSVGLDAARLAMLLAVLHRHAGVASGDQDVFVNAV 419 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GGV++TE +ADLA+LLA+ SSLR+RPLP+ L+ FGEVGLAGEIRP P GQER+ EAAK G Sbjct: 420 GGVRITEPAADLAVLLAIQSSLRNRPLPRGLLAFGEVGLAGEIRPAPRGQERLREAAKLG 479 Query: 424 FRRAIVPAANVPK---KAPEGMQIFGVKKLSDALSVFDDL 460 F AI+PAAN PK K EG+++ V ++ +AL V L Sbjct: 480 FSAAIIPAANAPKGAGKQFEGLELHPVSRIEEALDVVRGL 519 >UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms RepID=A9RTQ6_PHYPA Length = 610 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 183/491 (37%), Positives = 280/491 (57%), Gaps = 37/491 (7%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL----------------------AA 41 K +VC +CG Y +W GQC C A N++ E + A Sbjct: 118 KTKTHWVCEDCGESYTQWWGQCRNCKAMNSMKEFKEHTGNAGKRGGAGARAVENLVLSQA 177 Query: 42 SPMVARNERLSGYAGSAGV-AKVQKLSDISL------EELPRFSTGFKEFDRVLGGGVVP 94 + V ++ R G A V Q+LSD++ LP +E RVLGGG+VP Sbjct: 178 NGTVKKSPRAGGRAWLESVGGGPQRLSDVAAGHSQLHWRLPLQGDTGQEIGRVLGGGLVP 237 Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNML 154 GS IL+GG+PG GKSTLLLQ + LYV+GEES++Q++ RA RL + L + Sbjct: 238 GSLILVGGDPGVGKSTLLLQGTDEQGPG-PVLYVSGEESVEQISNRADRLNITAHELFLY 296 Query: 155 SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVA-QVRETAAYLTRFAKTRGV 213 S T +E + E QP+ +++DSIQ +++A+ S GSV+ QVRE A L R AK + Sbjct: 297 SATDLELVIGSITEIQPRAVIVDSIQTVYLAEANGSAGSVSQQVRECATALLRAAKETKI 356 Query: 214 AIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT 273 I +VGHVTK G +AGPK+LEH +D + ++G+ R LR KNR+G+ +E+GVF M Sbjct: 357 PIFLVGHVTKGGDIAGPKILEHVVDVVLYMEGERLQSHRLLRVVKNRYGSTDEVGVFEMV 416 Query: 274 EQGLREVSNPSAIFLSRGDEVTSG---SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVA 330 ++GL V++PS +FLS +E + ++V V EG+RP+L+E+QAL RR A Sbjct: 417 QEGLAAVASPSELFLSARNENLTNAASAAVAVTMEGSRPILLEVQALTSSVGQQPGRRTA 476 Query: 331 VGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPL 390 G++ RL++LLAVL + L++++QDVF+NVVGG+++ E +AD+A+ +A+ SS ++ + Sbjct: 477 NGVDAQRLSLLLAVLVKQASLRLSNQDVFINVVGGLQLREPAADVAIAVAICSSYFEKAV 536 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN---VPKKAPEGMQIFGV 447 +++ GE+GL GE+R V + R+ EAAK GF++ +VP + + A Sbjct: 537 DREMAFIGEIGLGGELRSVGQMERRLLEAAKLGFKKCVVPRSAAKTLKGLAGAAFVTIPC 596 Query: 448 KKLSDALSVFD 458 + + + Sbjct: 597 ADIKEVIEKLF 607 >UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae RepID=A7HJZ5_FERNB Length = 465 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 158/468 (33%), Positives = 260/468 (55%), Gaps = 15/468 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K +VC++CG + P+W G+C C WN+ E L ++ R + A Sbjct: 1 MAKA-KTIYVCDKCGYESPKWFGKCPVCGEWNSAKEFSLKDH-SETKSIRANEAGMEAPH 58 Query: 61 AKVQKLSDI-SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 + ++ L E R TG D +L GG++ G IL+GG PG GKST+ LQ + Sbjct: 59 PRFFDINSATKLLEEERIKTGINSIDELLSGGLIKGQVILLGGEPGVGKSTIALQICDSI 118 Query: 120 AQQ----MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMV 175 A+ + Y++GEES+ QV +RA RLG+ + L + SET IE I + + +L+V Sbjct: 119 ARNSNNDKRIYYISGEESVGQVGLRAKRLGINNEKLLISSETQIEDILNEIDPNKAQLIV 178 Query: 176 IDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH 235 +DSIQ + D+ S G + Q++ + F+K G+ +++ HVTK+G++AGPK++EH Sbjct: 179 VDSIQTLCSVDIDSPVGGIVQIKAVVEKVRIFSKKYGIPSILIAHVTKEGTIAGPKLVEH 238 Query: 236 CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT 295 +D + +G+ + +R LR KNR+G E+ VF MT GL+ +S FL+ + Sbjct: 239 VVDTVIYFEGERTTDYRILRVQKNRYGPSGEITVFQMTSNGLQGLSE--DTFLTYSNT-- 294 Query: 296 SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMAD 355 G+ ++EGTRP V+IQALV M + RR++ G++ ++ I+ AVL +H L + Sbjct: 295 PGNIFTSIYEGTRPFNVQIQALVSRVKMTSGRRISHGVDVRKVIIISAVLSKHLNLPLDF 354 Query: 356 QDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQER 415 D+++NV GGV +T+ +LA+ A++SS D + ++ + GE+GL G IRP + Q+R Sbjct: 355 HDIYMNVSGGVNITDPGCELAIAGAILSSFLDAYI-GNVFMAGEIGLDGSIRPAVNIQKR 413 Query: 416 ISEAAKHGFRRAIVPAANVPKKAPE---GMQIFGVKKLSDALSVFDDL 460 + A K ++P A++ + ++I V + ++ DL Sbjct: 414 VENAKKLPIDLIVIPKASIKNTNVKSTQNIKIETVDNIRQLFNLILDL 461 >UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7W6_9DELT Length = 447 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 185/460 (40%), Positives = 249/460 (54%), Gaps = 18/460 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MA PKR F C ECG P W+GQC C WNT+ E A G++ Sbjct: 1 MATKPKRVFTCTECGGVSPTWRGQCPRCGVWNTLVESVAGA--------GRKGHSLGEPS 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 L E+ F T F DRVLGGG+ PG A+L+GG PG GKSTLLLQ A Sbjct: 53 GVPVPLGSHPNEDFRPFPTAFSGLDRVLGGGLTPGGAVLLGGEPGIGKSTLLLQLAGLAA 112 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEE-QPKLMVIDS 178 + +Y++ EESL Q+ RA RLG+ + L S T + P L+++DS Sbjct: 113 VAGRRVVYLSAEESLPQLKARAERLGVLHEGLLAASTTDAGAAVDVLGATPAPDLVIVDS 172 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q MHMA ++ + GSV+QVR AA AK +V+VGHVTK+G +AGPK+LEH +D Sbjct: 173 VQTMHMAGIEGAAGSVSQVRSVAAACVEAAKRGQACLVLVGHVTKEGQIAGPKLLEHMVD 232 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + L+G+ FR LR KNR+G +EL V M E GL EV +PS FL D SGS Sbjct: 233 TVLYLEGERRHLFRILRVLKNRYGPTDELLVMEMREAGLIEVPDPSTFFLGDRDPAVSGS 292 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V++ EG RP VE QAL S ++ PRR A+GL+ RL +LLAVL + L + D+ Sbjct: 293 AVVMAVEGRRPFAVEAQALAAKSFLSVPRRAALGLDVGRLHLLLAVLEKRLRLNLGQADI 352 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + + GG+K+ + DL + A++SS DRPLP V +GEV L+G IRPV + R+ + Sbjct: 353 YAKIGGGLKIQDPGLDLGIAAAVLSSFYDRPLPAGAVFWGEVDLSGRIRPVAAHDTRLKQ 412 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 A + G+ + P+A V LSD Sbjct: 413 AERLGYGPVLCPSAGSLGPD--------VDNLSDLSRFLF 444 >UniRef50_Q9FK38 DNA repair protein-like n=8 Tax=rosids RepID=Q9FK38_ARATH Length = 484 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 173/486 (35%), Positives = 270/486 (55%), Gaps = 30/486 (6%) Query: 1 MAK----APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA---------- 46 M K K +VC CG +W G C ACH T+ + + Sbjct: 1 MNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLG 60 Query: 47 -RNERLSGYAGSAGVAKVQKLSDI------SLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 + + + +L+D+ + E RVLGGG+ PGS IL Sbjct: 61 FTEGKGLSWLPEQATVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLIL 120 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSI 159 IGG+PG GKSTLLLQ +LA+ LY++GEES++Q+ RA R+ + T+ L + S + + Sbjct: 121 IGGDPGIGKSTLLLQ-GSELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYLFSSSDL 179 Query: 160 EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVG 219 + I A P+ ++IDSIQ +++ DV S G + QV+E + L RFAK + + +VG Sbjct: 180 QDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNIPVFLVG 239 Query: 220 HVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLRE 279 HVTK G +AGP+VLEH +D + L+G+ S +R LRS KNRFG+ +ELGVF M GL Sbjct: 240 HVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMANSGLEV 299 Query: 280 VSNPSAIFLSRGDEVT---SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQN 336 VSNPS I+LS+ + + +G +V VV +G+R L+E+QAL + R G++ + Sbjct: 300 VSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSP--GSTVSRHVNGVQAS 357 Query: 337 RLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 R +++AVL + GL++ + +F+NV G+ ++ET+ DLA+ A+ SS + P+P + Sbjct: 358 RADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPIPHGVAF 417 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA---ANVPKKAPEGMQIFGVKKLSDA 453 GE+GL GE+R VP ++R+S AK GF + +VP ++ + + ++I G K L + Sbjct: 418 IGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKNLKEL 477 Query: 454 LSVFDD 459 ++ Sbjct: 478 INAVFK 483 >UniRef50_B8I5Q5 AAA ATPase n=13 Tax=Clostridiales RepID=B8I5Q5_CLOCE Length = 466 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 156/464 (33%), Positives = 251/464 (54%), Gaps = 15/464 (3%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K F C+ CG P+W G+C C WNT E +N++ S A + + Sbjct: 10 KNKTVFKCSNCGYVSPKWVGRCPECDNWNTFEE-------REIQNQKNSRSASARITKPL 62 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQ 122 +L+ + R TG EF+RV+GGG+V S +I PGAGKSTLLLQ +A + Sbjct: 63 VRLTQVKAGNSDRIVTGINEFNRVMGGGIVKDSITIITAKPGAGKSTLLLQVAGDVASKG 122 Query: 123 MKTLYVTGEESLQQVAMRAHR-LGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV 181 +K LY +GEES Q+ RA R D + + S+ S++ + + + P L+++DSIQ Sbjct: 123 LKVLYASGEESESQIKSRADRIFNKIEDGVWVYSDNSMDNVLNVVSQVDPDLLIVDSIQT 182 Query: 182 MHMADVQSS-PGSVAQVRETAAYLTRFAKT--RGVAIVMVGHVTKDGSLAGPKVLEHCID 238 + S GS Q E A L + AK R A+ +VG + K +AG + LEH +D Sbjct: 183 FILEGFPGSRAGSPTQTMECANELLKLAKDPVRPRAVFLVGQMNKSEEIAGLRALEHLVD 242 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD--EVTS 296 ++LDGD + R L KNRFG+ E G F+MTE GL + NPS F++ D E S Sbjct: 243 TVLILDGDNEEELRGLSVSKNRFGSTWERGYFSMTENGLESIDNPSEYFMTSRDKNEKVS 302 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 G ++ VV +G+RP++VEI++LV + P R+ + + +L L+++L + G + + D+ Sbjct: 303 GCALTVVKDGSRPIIVEIESLVSKTYTPYPSRIGECVRREQLNTLISILEQRGRISLYDK 362 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 DV + GG+K E + +L++++++VSS+ D+ +P D +VGL GE++ VPS + RI Sbjct: 363 DVVIKTTGGLKFKEPAVNLSIIMSIVSSVYDKEIPNDTAFISDVGLTGELKKVPSLELRI 422 Query: 417 SEAAKHGFRRAIVPAANVPKKA-PEGMQIFGVKKLSDALSVFDD 459 E + GF V + + + +++ VK + + + + Sbjct: 423 RELDRRGFGHVYVAKNALIRSLDIKNIEVHEVKSIQEVIGMVFK 466 >UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales RepID=D1BVG5_XYLCX Length = 498 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 202/473 (42%), Positives = 279/473 (58%), Gaps = 24/473 (5%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVA 61 AKA + A+ C ECG +W G+C C AW T+ E AAS R A Sbjct: 26 AKAARPAYRCTECGWAAAKWVGRCGECQAWGTVAEDGPAAS-----GPRTVAVTPVRSAA 80 Query: 62 KVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ 121 + +++I +E TG E DRVLGGG+VPG+ +L+ G PG GKSTLLL+ + A+ Sbjct: 81 R--PIAEIDVESARSAPTGVDELDRVLGGGLVPGAVVLMAGEPGVGKSTLLLEVASQYAR 138 Query: 122 Q--------------MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 LYVTGEES QV +RA R+G L + +ET + + E Sbjct: 139 GVGAPKGGLRAVGGERTVLYVTGEESAGQVRLRAERVGALAPTLLLAAETDLGTVLGHVE 198 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 P L+V+DS+Q + A+V G V+QVRE AA L AK R V +++VGHVTKDG++ Sbjct: 199 ATSPALLVVDSVQTIASAEVDGVAGGVSQVREVAAALIAVAKERQVPVLLVGHVTKDGTV 258 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+ LEH +D +GD SR R +R+ KNRFG +E+G F +TE G+ +++PS +F Sbjct: 259 AGPRTLEHLVDVVCQFEGDRHSRLRMVRAVKNRFGPTDEVGCFELTETGITGLTDPSGLF 318 Query: 288 LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHR 347 LS GS V V EG RPL +EIQ+LV S +ANPRR G+E +RLA +LAVLHR Sbjct: 319 LSHLGAGVPGSCVTVTLEGRRPLALEIQSLVAPSPLANPRRTTNGMESSRLAQILAVLHR 378 Query: 348 HGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR 407 H L++ADQDV+++ VGG + E +ADLA LA+VS+ LP V FGEVGLAG++R Sbjct: 379 HASLRLADQDVYLSTVGGARAGEPAADLAAALAIVSARTGDALPAGTVAFGEVGLAGDVR 438 Query: 408 PVPSGQERISEAAKHGFRRAIVP---AANVPKKAPEGMQIFGVKKLSDALSVF 457 PV R+SEAA+ GF RA+VP A + ++ G+++ +++A+ Sbjct: 439 PVTGIDRRLSEAARLGFVRAVVPPGTRAGLSARSAAGLELLESAHVAEAVDAV 491 >UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1c RepID=D1V789_9ACTO Length = 507 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 201/465 (43%), Positives = 275/465 (59%), Gaps = 18/465 (3%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSD 68 F C+ECGA+ RW G+C C AW+T+ A P A A + + +++ Sbjct: 46 FRCSECGAESIRWAGRCPRCQAWSTL--EAQKAPPRRAAVAGSGATAPATVTTPAKPVTE 103 Query: 69 ISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLY 127 + R STG E DRVLGGGVVPG+ IL+ G PG GKSTLLL+ + AQ + L Sbjct: 104 VDPSPAARRSTGVDELDRVLGGGVVPGAVILLAGEPGVGKSTLLLEVAARSAQAGHRALV 163 Query: 128 VTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV 187 VTGEES+ QV +RA R G +L + +ET + + EE QP L+V+DS+Q + A V Sbjct: 164 VTGEESVAQVRLRAGRTGTLHADLWLAAETDLGALLGHVEEVQPTLLVVDSVQTISAAGV 223 Query: 188 QSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDA 247 G V QVRE AA L R AK G+A ++VGHVTKDGS+AGP++LEH +D + +GD Sbjct: 224 DGVAGGVTQVREVAAALIRAAKALGLATILVGHVTKDGSVAGPRLLEHLVDVVLHFEGDQ 283 Query: 248 DSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVT--SGSSVMVVWE 305 + R +RS KNR+G +E+G F M E G+ +++PS +FLSRG + G V V+ E Sbjct: 284 QTALRMIRSVKNRYGPTDEVGCFEMNENGIWGIADPSGLFLSRGATASAVPGVCVTVMVE 343 Query: 306 GTRPLLVEIQALVDHSMM----------ANPRRVAVGLEQNRLAILLAVLHRHGGL-QMA 354 G RPL+ E+QALV PRR GL+ +R+A++ AVL + G + Sbjct: 344 GRRPLVAEVQALVAPQSYGRGGAGAPAPPPPRRAVSGLDGSRVAMITAVLQKRSGFGMLG 403 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D+F VGGVK+ E +ADLA+ LAMVSS +DR +P DL+ GEVGL GEIR V + Sbjct: 404 GADIFTASVGGVKLHEPAADLAVALAMVSSAQDRGVPSDLIALGEVGLTGEIRSVSGIER 463 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDD 459 R++ AA+ GFRRA+VP + PEGM + L+ A++ D Sbjct: 464 RLAAAARLGFRRALVPR--LSGLVPEGMTVTEATDLNAAIANMYD 506 >UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium jeikeium RepID=Q4JXK0_CORJK Length = 454 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 173/450 (38%), Positives = 252/450 (56%), Gaps = 16/450 (3%) Query: 22 QGQCSACHAWNTITEV--------------RLAASPMVARNERLSGYAGSAGVAKVQKLS 67 G+C C W ++ E R G G A Q ++ Sbjct: 1 MGRCPQCGEWGSLEERDARSLGLGAMGLAGVAGPGGSARRRGGGRGSGGLVPGASAQPVT 60 Query: 68 DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTL 126 + TG E DRVLGGG+VPGSA+L+ G PG GKSTLLL+ A+ L Sbjct: 61 QVDPTIAKHRPTGIGELDRVLGGGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVL 120 Query: 127 YVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD 186 +T EES+ QV RA R G D L + SE +E + P+L+++DS+Q M Sbjct: 121 ILTAEESVGQVRHRAERTGALHDKLYLASENDLENGLAQVDALNPELIIVDSLQTMQATG 180 Query: 187 VQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGD 246 V+ G VAQ R + LT AK G ++ VGHVTK+G++AGP+ +EH +D + +GD Sbjct: 181 VEGVAGGVAQTRAVTSTLTTLAKMSGTPVIAVGHVTKEGTVAGPRTIEHLVDVVLNFEGD 240 Query: 247 ADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEG 306 S R LR KNRFGA +E+G F T G++EV++PS +FL E +G++V VV +G Sbjct: 241 KHSSMRFLRGIKNRFGATDEVGCFEQTAHGIQEVADPSGLFLHHRTESVTGTAVTVVMDG 300 Query: 307 TRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGV 366 R ++ E+Q L +S NP+R G++ +R++++LAVL GL +AD++V+ VGG+ Sbjct: 301 RRAMVGELQTLALNSEFKNPKRYMTGMDASRVSMVLAVLSERCGLPLADKEVYAATVGGM 360 Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 K+ E SADLA LA+ S+ + PLP L+ GEVGL GE+R +P +R++EA + GF Sbjct: 361 KILEPSADLATGLALASTAKRSPLPLGLIALGEVGLGGEVRRIPQLTQRLAEAHRLGFHT 420 Query: 427 AIVPAANVPKKAPEGMQIFGVKKLSDALSV 456 A+VP N +AP+GM++ V L A++ Sbjct: 421 ALVPK-NCHYEAPKGMKVKEVSTLCQAVNY 449 >UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae RepID=B1L9V3_THESQ Length = 441 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 173/451 (38%), Positives = 262/451 (58%), Gaps = 24/451 (5%) Query: 8 AFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLS 67 FVC+ CG P+W G+C C ++T EV R + G L Sbjct: 3 KFVCSNCGYVSPKWFGRCPQCGEYDTAEEVVQ-------RRKNREGSPSLF-----LNLE 50 Query: 68 DISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLY 127 D L R STGF E DR GG+VPG IL+ G PG GKST+ LQ + A++ +Y Sbjct: 51 DAGEISLERLSTGFSELDRAFRGGIVPGQVILLSGEPGIGKSTIALQIAERFAERGLVVY 110 Query: 128 VTGEESLQQVAMRAHRLGLP-TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD 186 V+GEES QQ+ +RA RL L ++ + E I++I + ++ MV+DSIQ + +D Sbjct: 111 VSGEESPQQLKLRADRLLLKRKKDILLTLENDIDEIISSLQNKRVSFMVVDSIQTVFSSD 170 Query: 187 VQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGD 246 + SSPGS++QV+ FAK RGV +++VGHVTK+G +AGPK++EH +D +GD Sbjct: 171 LGSSPGSISQVKNVTMKTIDFAKRRGVPVLLVGHVTKEGEIAGPKLVEHMVDTVAYFEGD 230 Query: 247 ADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEG 306 + R L+ KNRFG +E+ VF + E G +V NPS + GD G+ + V+EG Sbjct: 231 RRTGLRLLKITKNRFGPSDEVAVFELKENGFVQVENPS---FTEGDADLPGNVLTCVFEG 287 Query: 307 TRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGV 366 T+P +V+IQALV + +P+RV G++ NR+ +L+AV+ ++ L + DV+VNVVGG+ Sbjct: 288 TKPFVVQIQALVSKNRTFSPKRVCKGVDANRVMLLIAVISKYLKLPIETHDVYVNVVGGL 347 Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 +VT+ +ADLA+ L++VSS + L + GE+GL G++R V + R++ G R Sbjct: 348 RVTDPAADLAIALSIVSSYLEVSL-HNTAAVGEIGLDGKVRKVYNINRRLNSLKSSG--R 404 Query: 427 AIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 IVP ++ +G +F V+ L +A+S+ Sbjct: 405 IIVPP---IEEEQKG--VFEVRDLKEAVSII 430 >UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales RepID=Q487B6_COLP3 Length = 462 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 185/465 (39%), Positives = 275/465 (59%), Gaps = 10/465 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL--AASPMVARNERLSGYAGSA 58 M KA K FVC +CG ++ RWQGQC C AWNT+ E+++ AAS A +G Sbjct: 1 MVKAAKIEFVCTDCGMNHTRWQGQCR-CGAWNTLVEMKIPKAASKNAATRTTSTGGYAGL 59 Query: 59 GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK 118 +K+++I + + STG E DRVL GGV GS +I G+PGAGK+TLL + + Sbjct: 60 TGGGSKKINEIESIDAEKRSTGIGELDRVLCGGVTTGSVNIISGDPGAGKTTLLSDLVAR 119 Query: 119 LAQQMKTLYVTGEESLQQVAMRAHRL--GLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 +++ +LY T EESL Q R HRL DNL +L+ETS+E I ++ + K VI Sbjct: 120 MSKTHASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLLAETSVEAIIDELDKNKIKFAVI 179 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DSIQ + + SPGS +QV+ +A LT++ K V + ++ HV K+ +AGP+ L H Sbjct: 180 DSIQAVVTENANGSPGSPSQVKSSAQSLTQYCKQNNVTMFIIAHVNKNNEIAGPQTLVHI 239 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D + +D + D + RTLR++KNRFG ++ +G+F M E+G+ V NPS IFLS + Sbjct: 240 VDALLHIDTN-DGQIRTLRANKNRFGDIDTVGIFKMCERGMLSVDNPSEIFLSGSSTESP 298 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS++ + +G R LL+EIQ L + P+RV VGL NR+ +L +L +H ++ Sbjct: 299 GSTITCIRKGNRNLLLEIQCLTTETEAEFPQRVCVGLNMNRIKMLTGILRKHTKTKIF-H 357 Query: 357 DVFVNVVGGVKVT--ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 D F N+VGG+K+ ET DLAL+ A++SSL D +P++ + GE+ L G++RP+ SG Sbjct: 358 DTFFNIVGGLKIDESETCIDLALVTALLSSLNDFVIPRNTCIMGELSLNGDVRPIDSGVP 417 Query: 415 RISEAAKHGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDALSVFD 458 R+ EAA+HGF +P N K G I VK + + + + Sbjct: 418 RVKEAAQHGFTEIFIPYRNYHKSMEGLGANIKAVKTIHELIELIK 462 >UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID=C2BUU2_9ACTO Length = 505 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 181/492 (36%), Positives = 260/492 (52%), Gaps = 37/492 (7%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAG---S 57 MAK K +VC+ CG ++P+W GQC +C W T+ E + A + + Sbjct: 1 MAK-EKTVYVCSSCGEEWPKWTGQCRSCGQWGTLEENVVLAKSSARTTGSGTTRSTGSYG 59 Query: 58 AGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117 + + + S E R TG EFDRVL GG+VPG+ IL+ G PG GKSTLLL+ Sbjct: 60 RPASPAKPIGHYSTERAVRLPTGVGEFDRVLSGGIVPGAVILLAGEPGIGKSTLLLEVAA 119 Query: 118 KLAQQ--------------------------------MKTLYVTGEESLQQVAMRAHRLG 145 ++AQ LY+TGEE+ + V RA R+G Sbjct: 120 RIAQGTAPRSPRVSENSPGLRLVSADSETPATVDTEGKTVLYLTGEETAEAVLSRAKRIG 179 Query: 146 LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 +NL + +ET + Q E P + ++DSIQ + + +S G AQVRE A L Sbjct: 180 GVAENLYLAAETQVSQALAQIETTSPDVTIVDSIQTLTDPTMDTSIGGPAQVREVTARLI 239 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 AK+R +A+++VGHVTKDG++AGP+ LEH +D +G+ R LR+ KNR+G + Sbjct: 240 DAAKSRHMALILVGHVTKDGAVAGPRTLEHLVDVVCQFEGERTGELRLLRAVKNRYGPTD 299 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMAN 325 +G F M E G+ + +PS +FLS+ E G+ V + EG R L +EI+AL + Sbjct: 300 AVGFFQMVESGIEGIEDPSGLFLSKTAEPVPGACVTMSLEGRRALPIEIEALTTPIAGGS 359 Query: 326 PRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSL 385 PRR GL+ +R A++LAVL L D +V+ VGG + E + DLA+ LA S++ Sbjct: 360 PRRTVSGLDYSRTAMMLAVLQARLKLPFGTLDAYVSTVGGARAVEPAVDLAVALAAASAV 419 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-KAPEGMQI 444 + + LV FGEV L GEIR + R++EAA+ GF AIVPAA K P G +I Sbjct: 420 TGQVIDPGLVAFGEVSLTGEIRSCTAVSRRVAEAARLGFTGAIVPAAATRDLKTPRGFKI 479 Query: 445 FGVKKLSDALSV 456 L +A+S+ Sbjct: 480 QAAANLREAMSL 491 >UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A5FVJ6_ACICJ Length = 466 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 207/463 (44%), Positives = 288/463 (62%), Gaps = 13/463 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK+ FVCNECGA P+W G+C AC AWNT+ + + + +G Sbjct: 1 MAKSA-TRFVCNECGAVAPKWAGRCEACGAWNTLEPQAVVPTGTGRKAAVQAGRGIDFVG 59 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 PR G +EFDRVLGGG+VP SAIL+GG+PG GKSTLLLQ +LA Sbjct: 60 LA------GETPPPPRIPLGIEEFDRVLGGGMVPASAILVGGDPGIGKSTLLLQAAARLA 113 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ-PKLMVIDS 178 + LYV+GEES+ Q+ +RA RL L T +N+ S T + I E+ L+VIDS Sbjct: 114 ASGRRVLYVSGEESVAQIRLRAERLDLKTAPVNLASATVLADILGSLRAERDAALVVIDS 173 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ + V+S+PG+V+QVR A L + AKT+G A+++VGHVTK+G+LAGP+VLEH +D Sbjct: 174 IQTIWDETVESAPGTVSQVRANAFALIQAAKTQGFALMLVGHVTKEGALAGPRVLEHMVD 233 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +GD +FR LR KNRFGA +E+GVF MT +GL EV+NPSA+FL+ +GS Sbjct: 234 VVLHFEGDRGHQFRILRGAKNRFGATDEIGVFEMTGRGLAEVANPSALFLAERHGNVTGS 293 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 +V EG+RP+L+E+QAL+ + + RR +G +Q RL++LLAVL GL++ DV Sbjct: 294 AVFAGLEGSRPVLMEVQALLSANGAGSARRSVIGWDQGRLSMLLAVLDARCGLKLGGHDV 353 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 ++NV GG++V+E +ADLA+ A++S+ P + V FGE+GL+GE+R V + R+ E Sbjct: 354 YLNVAGGLRVSEPAADLAVAAALISAASGVPADPETVFFGEIGLSGELRQVAQVELRLKE 413 Query: 419 AAKHGFRRAIVPA----ANVPKKAPEGMQIFGVKKLSDALSVF 457 AAK GF RA +P APEGM + LSD ++ Sbjct: 414 AAKLGFGRAALPRRVAGGTRRLSAPEGMVLAEYGHLSDLVAAM 456 >UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacteria RepID=A1SXY3_PSYIN Length = 470 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 184/472 (38%), Positives = 278/472 (58%), Gaps = 18/472 (3%) Query: 1 MAK-APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVA-----RNERLSGY 54 MAK K A+VC++CGA+Y +WQGQC C AWNTITE R A+S + + +GY Sbjct: 1 MAKAKTKIAYVCSDCGANYQKWQGQCGECKAWNTITEFREASSTTKSVNAAVTRNKNAGY 60 Query: 55 AGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQ 114 G+ VQ++S + +E R STG E DRVLGGG+ GS +LI G+PG+GK+TLL + Sbjct: 61 TGALSNG-VQRISGVQIENATRVSTGLSELDRVLGGGITLGSVVLISGDPGSGKTTLLTK 119 Query: 115 TLCKLAQQMKTLYVTGEESLQQVAMRA---HRLGLPTDNLNMLSETSIEQICLIAEEEQP 171 ++Q M TLYVT EESL Q A R +L DN + IE I E Sbjct: 120 VAEVMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNFLLSDTDCIEDIVDQCLENNV 179 Query: 172 KLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPK 231 + ++ DSIQ + + G V QV+ A L R K G+ +++VG V K+ +AGP+ Sbjct: 180 RFLIADSIQAFESNQAEGTAGGVTQVKICAKILNRLCKQHGITLILVGQVNKNSQMAGPQ 239 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG 291 L+H ID ++ ++ D+ R LR+ KNRFG ++G+F MTE+G+ V NPS +FLS Sbjct: 240 TLKHIIDTAIHIE-VNDASVRILRADKNRFGDTEQVGIFQMTEKGMFSVDNPSRLFLSGS 298 Query: 292 DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGL 351 +E GS++ V+ +G R LL+EIQAL R +G+ +RL+++ AVL +HGG+ Sbjct: 299 EEHFEGSAISVIKDGARNLLIEIQALATEVEGEKSIRNCIGISYSRLSLITAVLKKHGGI 358 Query: 352 QMADQDVFVNVVGGVKV--TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPV 409 + D+ +++VGG+K+ +ETS D+A++ A++SS+ +P+PQD V GE+ L GEIR + Sbjct: 359 RTY-YDINISLVGGLKMSDSETSTDMAVMAALLSSINSKPVPQDSVFIGEIALTGEIRQI 417 Query: 410 PSGQERISEAAKHGFRRAIVPA----ANVPKKAPEGMQIFGVKKLSDALSVF 457 P R+ EA HG ++ +PA ++ + +G I +K + + + Sbjct: 418 PQIVPRVREALSHGKKQIYIPAVAYHKSMQQFVKKGQSIHPLKNIKELIEAL 469 >UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312A2 Length = 466 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 195/448 (43%), Positives = 267/448 (59%), Gaps = 18/448 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGY-----A 55 MA+ P VC++CG + RW G+C C AWNT+ E + A + Sbjct: 1 MAR-PTTVHVCSDCGHEALRWAGRCPGCGAWNTLVEEVRSGGSNGAGGAGRGARAGVGGS 59 Query: 56 GSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT 115 +L ++ E+ R TG E DRVLGGG+VPGS +LIGG+PG GKSTL Sbjct: 60 RGGTAVAPVRLGEVQASEVERLPTGIGELDRVLGGGIVPGSLVLIGGSPGIGKSTLTTMA 119 Query: 116 LCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLM 174 + L KTLYV+ EES Q+ +RA RL + +++ET + + E E+P + Sbjct: 120 VANLTGAGRKTLYVSAEESAAQIKLRAERLPGAALEIPVIAETDLGAVLATLERERPDVC 179 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 VIDS+Q +H A++ +PGSV QVRE A + R AK +A+++VGHVTK+G+LAGP+VLE Sbjct: 180 VIDSVQTLHAAELTGAPGSVGQVREVAGEIMRVAKQHRIAVLLVGHVTKEGALAGPRVLE 239 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 H +DC + +G+ + +RTLR+ KNRFG+ +E GVF M + GL EV + SA F+ Sbjct: 240 HLVDCVLQFEGERERTYRTLRALKNRFGSTSEAGVFEMRQGGLVEVLDASARFVGE-ATH 298 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 GS V+ EG+RPLLVE+QALV S + PRRV G+++NRLA++LAVL RH G+ + Sbjct: 299 APGSVVLCAMEGSRPLLVEVQALVSPSELVPPRRVVSGIDRNRLALVLAVLTRHAGVAVG 358 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQD----------LVVFGEVGLAG 404 DVFVNVVGGV+V E ADLA+ LA+ S+ R L L FGE+GL G Sbjct: 359 SADVFVNVVGGVRVDEPGADLAVALAVASAARGVALRGGNGADGEDGPPLACFGELGLTG 418 Query: 405 EIRPVPSGQERISEAAKHGFRRAIVPAA 432 E+R V + R +EAAK G + P A Sbjct: 419 ELRSVAHPERRTAEAAKFGLGTIVTPEA 446 >UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B2S0C8_BORHD Length = 466 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 161/448 (35%), Positives = 259/448 (57%), Gaps = 14/448 (3%) Query: 1 MAKA-PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAG 59 MAK K + C CG +W G+C C +W ++ S G S Sbjct: 1 MAKKKDKEIYKCLNCGYKSLKWLGKCPECFSWESLEHYVEPKSS--------YGANLSKS 52 Query: 60 VAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 +++ L D + R+ TG +EFDRVLG G+V GSAILI G PG GKST LLQ L Sbjct: 53 KSEIFSLKDFKQVDNVRYLTGIEEFDRVLGAGIVIGSAILISGEPGIGKSTFLLQISSIL 112 Query: 120 A-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 + LY+ GEES+ Q+ +RA+RL + +D + + +E ++ + + + MV+DS Sbjct: 113 SLDGKNVLYLAGEESIPQIKLRANRLKISSD-ILITNEIDVDALIEMLANIELDFMVVDS 171 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 IQ ++ +VQ S G VAQ++ L +AK + + + +VGHVTKDG LAGPK++EH +D Sbjct: 172 IQTLNSREVQGSLGGVAQLKHCVYKLVEWAKGKNITLCLVGHVTKDGILAGPKIIEHMVD 231 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 + +A R LR+ KNRFG +NE+G+F MT GL E+ +PS+IFL R +E++SG Sbjct: 232 SVFYFE-EAKKSLRMLRATKNRFGTINEIGIFEMTSLGLVEIKDPSSIFLERKEEISSGI 290 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 ++ ++ EG+R L VEIQAL+ + M R + ++ +++ +LAV+ ++ L + D+ Sbjct: 291 AIGIINEGSRVLFVEIQALITRTGMNISRIFSEKIDSKKISRILAVISKYLNLNFNNDDI 350 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +VNV GG+++ + +LA+L+A+ S+ + + Q+L+ GE+ L+GEI+ + + ++ Sbjct: 351 YVNVSGGLRIDDVEIELAVLVALFSAKTNVIISQELIFTGEISLSGEIKVSSNIESKVIA 410 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFG 446 A K GF+ AN+ G + G Sbjct: 411 ALKAGFKSVF--GANLRDNHYNGYESIG 436 >UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga lettingae TMO RepID=A8F5C2_THELT Length = 441 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 158/460 (34%), Positives = 250/460 (54%), Gaps = 25/460 (5%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 K F+C CG + +W G+C C WNT E + + + Sbjct: 2 KEKERFICKSCGYESIKWFGKCPQCGEWNTAVE---------------ATSKPLERIVDL 46 Query: 64 QKLSDI-SLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ- 121 L D+ R +TGF E D L G+VPG +L+GG PG GKSTL L+ ++ Sbjct: 47 VNLKDVLKSVNSTRLTTGFTELDASLCSGIVPGQVLLLGGEPGVGKSTLALEICAWFSKN 106 Query: 122 QMKTLYVTGEESLQQVAMRAHRLG-LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 K+LYV+ EES+ Q+A+RA RL D + + S+ I+ + I E L+V+DS+Q Sbjct: 107 GYKSLYVSAEESVDQLAIRARRLACENLDGITVCSDNDIDSVLQIINE-DYSLIVVDSLQ 165 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 M+ +V + PGSV QVR A + K + +++ H+TK G ++GPK++EH +D Sbjct: 166 TMYSEEVGTYPGSVVQVRVCAEKIISKCKELSIPSILIAHITKSGEISGPKLVEHLVDTV 225 Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300 + +G+ + R LR KNRFG E+ VF M + GL+++ +P +F D+ G+ + Sbjct: 226 IYFEGEKTTELRILRVIKNRFGPSGEIAVFEMRDDGLKQLCDP--VFFDLTDQ-LPGNCL 282 Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 V EG+R +V+IQALV S PRRV+ G + RL +L+A + +H L + DV+V Sbjct: 283 SCVIEGSRAFVVQIQALVSRSRSNMPRRVSNGFDMTRLLLLIATIGKHMRLPVESHDVYV 342 Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 NV+GG+++T+T+ D A++ A++SS+ ++P+ + V GEV L G I+PV + RI Sbjct: 343 NVLGGLRITDTAVDAAVVGAILSSMMEKPI-EKTSVIGEVSLDGRIKPVYRMRSRIDSLK 401 Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSV-FDD 459 + G + IVP + V ++I ++ + D L V D Sbjct: 402 RAGIQSVIVPKS-VDLSDKNLVKIDSLQDMGDVLGVKLFD 440 >UniRef50_C5CHP4 DNA repair protein radA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHP4_KOSOT Length = 442 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 167/453 (36%), Positives = 269/453 (59%), Gaps = 14/453 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M++ +R +VC+ CG + P W G+C +C WN+ + + ++ ++ V Sbjct: 1 MSRKKRRIYVCDACGYESPAWFGRCPSCGTWNSAISMSVDNHAIIETSK---------EV 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A ++ LSDI +E+ R TG EFDR LGGGVVPGS +L+ G PG GKSTL+LQ ++ Sbjct: 52 ANIRSLSDIKVEDSHRLFTGLNEFDRALGGGVVPGSVVLVSGEPGIGKSTLMLQVAERMV 111 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGL-PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 K LY++GEES +Q+ +RA RL L T+N+ + + T ++ + + L++ DS+ Sbjct: 112 SYGKVLYISGEESQRQIKLRARRLKLGKTENIEVSATTELDF-LEKLDLKDYSLLIFDSL 170 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q + +++V S PGS QVRE A ++ AK VA V+VGHVTK G +AGPK++EH +D Sbjct: 171 QTLRLSNVASLPGSFVQVRECANFVVSKAKESNVAAVIVGHVTKGGQIAGPKLVEHIVDT 230 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + D + S +R LR+ KNRFG +E+ VF MT GL EV + S +F+ V G+ Sbjct: 231 VLYFDTNK-SGYRFLRTVKNRFGPSDEIAVFEMTSDGLAEVPDISDLFVKDF-IVAPGNV 288 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 + V EG++ LVE+Q+LV + PRR+A G+ +R+ ++ AVL + + + + D++ Sbjct: 289 ITAVSEGSKTFLVEVQSLVSKPIYGTPRRLATGVPIDRVLLVAAVLSKRANIPLDNLDLY 348 Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419 +N+ GG++V + DLA+ L+++SS ++ +PQ + FGE+GL G +R V +RI Sbjct: 349 INIAGGIQVDDPGTDLAIALSLLSSFTNKAVPQGMAAFGEIGLDGTVRNVTGSSKRIDRL 408 Query: 420 AKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSD 452 + GF + P N+ + + + V +SD Sbjct: 409 KESGFSEVLSPNGNIRIQNIADL-VRFVGGMSD 440 >UniRef50_D1Y454 DNA repair protein radA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y454_9BACT Length = 451 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 185/460 (40%), Positives = 269/460 (58%), Gaps = 15/460 (3%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + + C ECG G+C C AW T+ E A M A AG Sbjct: 1 MAKKDGKRYCCIECGYVSLVPSGKCPRCGAWGTLEEEIPVAPSMAA-----------AGT 49 Query: 61 AKVQKLSDISLEELP-RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119 AK+ DIS E P R ++GF E DRVLGGG VPG +L+GG PG GKSTLLLQ + Sbjct: 50 AKILTPVDISTLEPPGRLASGFGELDRVLGGGWVPGGVVLLGGQPGIGKSTLLLQVCGHI 109 Query: 120 -AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 A + LY++GEES Q+ +RA RL + D L++ T I+ +A++ L+V+DS Sbjct: 110 SAAGRRVLYISGEESPSQLGLRAKRLKILHDGLDVCCHTVIDDALALAKDHS--LIVVDS 167 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 +Q M + + PG+ QVR TA +AK GV +V+VGH+TK+G +AGP +LEH +D Sbjct: 168 VQAMRTSQAEGWPGTPTQVRATAQVCVNYAKEHGVPMVLVGHITKEGRIAGPMLLEHMVD 227 Query: 239 CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGS 298 ++ D S +RTLR+ KNR+G +E+G+F M GL EV +PS ++ +R D SG Sbjct: 228 AVIMFADDNSSVYRTLRASKNRYGGTDEMGIFEMRSDGLTEVPDPSYLYWNRSDGAVSGV 287 Query: 299 SVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDV 358 + V+ EG+RPL+ EIQ L S A P+R +GL N++ +LLAVL L D+ Sbjct: 288 VMTVIMEGSRPLVAEIQTLASESSFAYPKRAGIGLGANKIGMLLAVLQSRCALPSLRDDI 347 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 + NV GG+++ + ADLAL +M S+L + + + + GEVGLAGE+RPV +R+ E Sbjct: 348 YCNVAGGLEIHDPGADLALAASMASALTGKNVLSECCLIGEVGLAGEVRPVSGLAQRLRE 407 Query: 419 AAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFD 458 AA+ GF+RA+V + + +++ V +S+AL+ + Sbjct: 408 AARLGFKRAVVSSREEKPQLDAEIELIRVLSVSEALARAN 447 >UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C9Y705_9BURK Length = 665 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 206/372 (55%), Positives = 263/372 (70%), Gaps = 8/372 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK K + CNECG P+W G+C C+AWNT+ E ++ + +A A Sbjct: 1 MAK-DKTIYTCNECGGTSPKWLGKCPHCNAWNTLIESVASSD-----GPAKNRFASLAKT 54 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 A+V LSDI +++ R TG +E DRVLGGG+V G +LIGG+PG GKSTLLLQ L L Sbjct: 55 AEVTVLSDIEAQDVERTPTGHEELDRVLGGGMVEGGVVLIGGDPGIGKSTLLLQALDSLQ 114 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + TLYVTGEES QVA+R+ RLGL + +L+E +E+I E +P + VIDSI Sbjct: 115 RSGKNTLYVTGEESGAQVALRSRRLGLDHSQVKVLAEIQLEKILATLEANRPDVAVIDSI 174 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q ++ + S+PGSVAQVRE AA+LTR AK G AIV+VGHVTK+G+LAGP+VLEH +D Sbjct: 175 QTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDT 234 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299 + +GD S+FR +R+ KNRFGAVNE+GVFAMTE+GL+ VSNPSAIFLS+ E GS Sbjct: 235 VLYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHAEPVPGSC 294 Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359 VMV EGTRPLLVEIQALVD +PRR++VGL+++RLA+LLAVLHRH G+ DQDVF Sbjct: 295 VMVTLEGTRPLLVEIQALVDMG-GPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVF 353 Query: 360 VNVVGGVKVTET 371 +N VGGV++ E Sbjct: 354 INAVGGVRIGEP 365 >UniRef50_A4SAK3 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAK3_OSTLU Length = 478 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 195/480 (40%), Positives = 280/480 (58%), Gaps = 36/480 (7%) Query: 5 PKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQ 64 K A+VC ECG D +W GQC AC +W+T+ +A +P + G AG Q Sbjct: 3 TKTAYVCAECGEDSRQWLGQCPACKSWDTMK--AIALAPTSGGGAGKASAGGGAGARARQ 60 Query: 65 KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC------- 117 + + L E KE +RVLGGGVVPG IL+GG+PG GKST+LLQ Sbjct: 61 TMPRMRLREELG-----KEIERVLGGGVVPGGMILVGGDPGVGKSTILLQLAGLLGARGE 115 Query: 118 ----------KLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE 167 + LY +GEES++QVA RA R+G+ + + + S T +E I Sbjct: 116 EREGEEDGANESIAAGGVLYASGEESVEQVAGRAERMGIDPNGIYLYSATRLENILEAVS 175 Query: 168 EEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL 227 +P +V+DSIQ + + D SPGSV+QVRE A L AKT G+ + ++GHVTK G + Sbjct: 176 TLKPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKTTGMPVFIIGHVTKSGDI 235 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 AGP+VLEH +D + L+GDAD R LR HKNR+G+ +E+GVF M++ G++ V++PSA+F Sbjct: 236 AGPRVLEHIVDVVLYLEGDADRAVRILRGHKNRYGSTDEVGVFQMSDGGMKPVASPSALF 295 Query: 288 LSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDH--------SMMANPRRVAVGLEQNRL 338 L ++ V +G+RP ++E+QAL + M A P R AVGL R+ Sbjct: 296 LGERILSPDVSAAPTVTVQGSRPFMLEVQALTNERADAGEGGGMSAPPIRTAVGLRFERM 355 Query: 339 AILLAVLHRH-GGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 +LLAVL + G ++ DVF+N+VGG+K+ + S D+A+ LA+ SS ++PLP D+ F Sbjct: 356 QLLLAVLAKFVLGRRLQKHDVFINIVGGMKLEDPSTDVAVALAIASSFVEKPLPPDMCFF 415 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKA--PEGMQIFGVKKLSDALS 455 GEVGL GE+RPV + RI+EAA GF+R ++P A + G+++ L+DAL Sbjct: 416 GEVGLGGELRPVMQAERRIAEAATMGFKRVLLPEAGSSPEMGKKTGIELVRCNTLADALE 475 >UniRef50_C7RFC7 DNA repair protein radA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RFC7_ANAPD Length = 456 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 160/461 (34%), Positives = 258/461 (55%), Gaps = 13/461 (2%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K A+ C CG W GQC C W ++ EV + +++ S Sbjct: 1 MAKAKK-AYECTSCGHTQGVWAGQCPECGKWGSMHEVIV--------DKKASKQNIVVED 51 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 +KL I+L+E R + + EFDR +GGG+V S ++ PGAGKSTLLLQ A Sbjct: 52 KNAKKLKSIALDESERIKSTYSEFDRAVGGGLVRDSVSILTARPGAGKSTLLLQLSKSYA 111 Query: 121 -QQMKTLYVTGEESLQQVAMRAHRLGLPT-DNLNMLSETSIEQICLIAEEEQPKLMVIDS 178 + +K +Y++GEES Q+ RA R+ +N+ +LS S++ + ++ +DS Sbjct: 112 DKGLKVIYISGEESESQIKSRADRIMSELSENIWILSTNSMDLAIKEIKNVDADIVFLDS 171 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAK--TRGVAIVMVGHVTKDGSLAGPKVLEHC 236 IQ +A++ + GS Q E A AK R A++M+GH+TK G +AG + LEH Sbjct: 172 IQTFSLAELDNKQGSPTQTIEVANKAVDIAKDSERKRAVIMIGHMTKKGEMAGLRTLEHL 231 Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296 +D ++LDG+++ R L S KNRFG E+G+F+M E GL E++NPS F++ E Sbjct: 232 VDTVLVLDGESEEDLRILTSTKNRFGRTGEIGLFSMDEDGLNEITNPSEYFITERSEDIE 291 Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356 GS++ V EG+R L VEI++LV S M P+R+ L ++ L L+++L GL + D Sbjct: 292 GSAISVTKEGSRLLEVEIESLVSKSFMPYPQRIGDSLRRDDLNTLISILQERAGLNLYDY 351 Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416 +V + GG+K++E S +LA+++++ SSL P+ V EVGL GE++ VP ++R+ Sbjct: 352 NVIIKTTGGIKLSEPSVNLAIMVSIASSLMKHPVSDKSVFIAEVGLTGELKKVPQIKQRL 411 Query: 417 SEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 E + G+++A V ++ K + ++I+ + + + Sbjct: 412 KEIERLGYKKAFVAKNSIDSKDFKELKIYQLANIRQVIDEV 452 >UniRef50_B7FVI7 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7FVI7_PHATR Length = 500 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 170/494 (34%), Positives = 248/494 (50%), Gaps = 66/494 (13%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARN--------------- 48 + R +C CG+++ +W G+C C WNT+ E + P A Sbjct: 7 STARIHICGNCGSEFVKWMGRCPTCREWNTLQEHAVRREPASASRPVFGTNISSSGARPA 66 Query: 49 ERLSGYAGSAGVAKVQKLSDISLEELPRFST-------------GFKEFDRVLGGGVVPG 95 L G GS G +++D+ + +T E + VLGGG++PG Sbjct: 67 SWLDGIPGSLGSNAPVRITDLVSSDDGSTNTLSRLHSSQRVTIPNDDELNVVLGGGIMPG 126 Query: 96 SAILIGGNPGAGKSTLLLQTLCKLAQ---------------------------QMKTLYV 128 S LIGG+PG GKSTL+LQ +A YV Sbjct: 127 SLNLIGGDPGVGKSTLMLQIAGAVASLAIPTPGIGMGLPDSNNTRTKSSTDGTGGPVWYV 186 Query: 129 TGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQ 188 +GEE+ Q+A RA RLG+ L +L ET ++ +C P L+VIDSIQ M Sbjct: 187 SGEENPDQIASRASRLGILQSELWLLGETHVDTLCQQVVVHAPALIVIDSIQTMVCDSGG 246 Query: 189 SSPGS-VAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG-- 245 SS + QVRE A L R AK+ + I +VGHVTK+G +AGP+ +EH +DC + L+G Sbjct: 247 SSSAGGITQVRECVALLLRLAKSTRIPIFLVGHVTKNGDVAGPRTVEHMVDCVLYLEGSA 306 Query: 246 -DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG--DEVTSGSSVMV 302 + R LR+ KNRFG+ +E+GV+ MT L VS+PS++FL+ E G ++ + Sbjct: 307 HNDGLNLRMLRASKNRFGSSDEVGVYEMTAGRLLPVSDPSSLFLAHRVTQEDAEGCAIAI 366 Query: 303 VWEGTRPLLVEIQALVDHSMM--ANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360 EG R + VE+QAL S RR G+ +RL +L+ VL + G+ M QDV++ Sbjct: 367 ALEGMRAMTVEVQALATPSGSTTGYGRRTVEGIAMSRLNLLIGVLQKRCGVFMFKQDVYI 426 Query: 361 NVVGGVKVT---ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 NV G +++ + DL + +A+VSSL + D GEVGL GE+R V + +R++ Sbjct: 427 NVAGRIRLDRGEGNAVDLGVAVALVSSLATIAVRSDTAFVGEVGLLGELRSVAALPKRLA 486 Query: 418 EAAKHGFRRAIVPA 431 EA + GF R I P Sbjct: 487 EARRMGFSRVITPR 500 >UniRef50_C1N8F6 DNA repair protein-related n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N8F6_9CHLO Length = 720 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 194/574 (33%), Positives = 284/574 (49%), Gaps = 121/574 (21%) Query: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLS--------- 52 +KA K+ ++C +CG DY ++ G+C C AW + +A S + Sbjct: 106 SKAAKQRYLCQDCGEDYNQFHGRCPNCKAWESFKTFTIAPSGGGGKAPGGGAGARALASA 165 Query: 53 -----------------------------------GYAGSAGVAKVQKLSDISLEELP-- 75 A ++L+ + + Sbjct: 166 TETASSPVTTSNVLPASSRRRNAAAADDAFAASASRSGWVEASAAPRRLAAVLAPDATGK 225 Query: 76 -------RFSTGFK-EFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM---- 123 R T E +RVLGGG+VPG+ +L+GG+PG GKSTL+LQ L ++ Sbjct: 226 NVRGARLRVPTELGAEVERVLGGGIVPGALMLVGGDPGVGKSTLVLQIAGLLGERALKNA 285 Query: 124 -----------------------------KTLYVTGEESLQQVAMRAHRLGLPTDNLNML 154 +YV+GEES++Q+A RA RLG+ D L + Sbjct: 286 NAAKEDAEDAEDAEDGTSTVIASASPPPPSVMYVSGEESVEQLAGRAERLGVHPDGLVVY 345 Query: 155 SETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 S T +E I E+P +V+DSIQ + + D SPGSV+QVRE A L AK+ G+ Sbjct: 346 SATRLEAILEAVVRERPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKSAGMP 405 Query: 215 IVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTE 274 ++GHVTK G +AGP+VLEH +D + L+GDAD R LR HKNR+G+ +E+GVF M + Sbjct: 406 TFIIGHVTKSGDIAGPRVLEHIVDVVLYLEGDADRAVRVLRGHKNRYGSTDEVGVFEMID 465 Query: 275 QGLREVSNPSAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDH------------S 321 GLR V +PSA+F+ ++ V +G+RP ++E+QAL Sbjct: 466 AGLRPVPSPSALFMGERVLTPDVSAAPTVTVQGSRPFMLEVQALCAERAGADDAENGGGG 525 Query: 322 MMANPRRVAVGLEQNRL---AILLAVLHRH-GGLQMADQDVFVNVVGGVK---------- 367 MMA R AVG++ R+ ++LLAVL + G ++ DVFVNVVGG+K Sbjct: 526 MMAPAVRTAVGIKPERMQARSLLLAVLAKFVLGSRVHRHDVFVNVVGGLKARSISHWSPY 585 Query: 368 -----VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKH 422 + + SAD+A+ LA+ SS +R LP D+ FGEVGL GE+RPV + R+ EAA Sbjct: 586 DRVGALEDPSADVAVALAIASSFVERALPADMAFFGEVGLGGELRPVAQAERRLQEAATM 645 Query: 423 GFRRAIVPAANVPKKA--PEGMQIFGVKKLSDAL 454 GF R ++PAA K A +G+++ L++AL Sbjct: 646 GFTRVLMPAAGSTKDAGKRQGVEVVLCNTLAEAL 679 >UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltransferase n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF42_PETMO Length = 423 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 144/435 (33%), Positives = 245/435 (56%), Gaps = 18/435 (4%) Query: 28 CHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRV 87 C+ + E A + N ++ D L + T F+E D V Sbjct: 2 CNELESAVEYNTADVTIDTGNIKVPDIVFL----------DQELPPAKKIPTNFQEIDNV 51 Query: 88 LGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGL 146 L GG+V G+ L+ G+PG GKSTLL Q + + YV+GEES +QV R +RL + Sbjct: 52 LNGGLVEGAVYLLSGDPGIGKSTLLAQIAKSIQTAEGYIFYVSGEESTEQVVQRFNRLEI 111 Query: 147 PTDNLNMLSETSIEQICLIAEEEQPK--LMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 N+ ++ E +++ I E+ K ++ IDS+Q + + + SSPGS+ QVRE+ + Sbjct: 112 KNKNIGLIFENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGSILQVRESTRKM 171 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAV 264 +AK + + +V+VGHV K+G++AGPKVLEH +DC + ++ + S R L+ KNR+G Sbjct: 172 VEYAKKKNIPVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPT 231 Query: 265 NELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMA 324 +E+ +F +T++GL+ + N ++ FLS + + +V G + L +EIQALV + + Sbjct: 232 DEVVLFEITQKGLKPIDNINSFFLSDYSNESGNTLTIVKV-GQKLLPIEIQALVSNPVYG 290 Query: 325 NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSS 384 +PRRV G+ +RL +++AVL + L + +D+FV+ GG+++ ++S D+A+ L+++SS Sbjct: 291 SPRRVTSGIPLDRLLMIIAVLSKKLKLPLESKDIFVSSAGGLRINDSSMDVAIALSLISS 350 Query: 385 LRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQI 444 + D PL + FGE+GL G IR +P ++R+ + K GF ++P P+K I Sbjct: 351 IFDTPLSSSTIAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLSPRKN----SI 406 Query: 445 FGVKKLSDALSVFDD 459 + + D + +F Sbjct: 407 IVAESVKDLIKLFKK 421 >UniRef50_B5W8S1 DNA repair protein radA n=2 Tax=Arthrospira RepID=B5W8S1_SPIMA Length = 573 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 146/324 (45%), Positives = 207/324 (63%), Gaps = 2/324 (0%) Query: 131 EESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSS 190 E S + + +L +L ET +E I E +P L +IDSIQ ++ A + S+ Sbjct: 226 ELSPESENGKNSHDSREEADLFLLPETDLEVILRELESLKPTLAIIDSIQTIYFASLTSA 285 Query: 191 PGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSR 250 PGSVAQVRE + L + AK + +++VGHVTKDGSLAGP+VLEH +D + +GD + Sbjct: 286 PGSVAQVRECTSALMQVAKRENITLLIVGHVTKDGSLAGPRVLEHLVDTVLYFEGDRFAS 345 Query: 251 FRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPL 310 R LRS KNRFGA +E+GVF M GL+EVSNPS +FL D+ + G++ +V EGTRP+ Sbjct: 346 HRLLRSMKNRFGATHEIGVFEMVSHGLQEVSNPSELFLGNRDDCSPGTATIVSMEGTRPI 405 Query: 311 LVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTE 370 +VEIQALV + + RR G++ +RL +LAVL + G+ ++ D V VGG+KV E Sbjct: 406 VVEIQALVSPASYGSARRTTTGVDSSRLMQILAVLEKRVGIPLSKLDAIVASVGGLKVDE 465 Query: 371 TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP 430 +ADL + +A+V+S RDR + ++ GEVGL G++RPV + R+ EAAK GF+RAIVP Sbjct: 466 PAADLGVAIAIVASFRDRLVDPRTILIGEVGLGGQVRPVSQLELRLREAAKLGFKRAIVP 525 Query: 431 AANVPKKAPEGMQIFGVKKLSDAL 454 P+ GMQI V ++ DA+ Sbjct: 526 KGQKPEDL--GMQILPVGRVIDAI 547 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPM------------VARNERL 51 P+ +VC ECGA++ ++ G+CS C AWN++ E + SP E Sbjct: 3 KPRTLYVCRECGAEFSQYFGRCSNCQAWNSLVEQVVEPSPTPSLQRFSWSELGSGLTEDT 62 Query: 52 SGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTL 111 KLS IS + R +G+ E DRVLGGG+VPGS +LIGG PG GKSTL Sbjct: 63 VNKPNQGQPRLSFKLSQISDQTQSRIPSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTL 122 Query: 112 LLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQIC 163 LLQ L+ + LYV+ EES QQV +R+ RL ++ +++ + Sbjct: 123 LLQVANSLSHHARVLYVSAEESGQQVKLRSQRL-WNAPSVASVADDDAHDLQ 173 >UniRef50_B5Y8V7 DNA repair protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8V7_COPPD Length = 407 Score = 348 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 134/420 (31%), Positives = 210/420 (50%), Gaps = 34/420 (8%) Query: 4 APKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKV 63 + K + C+ CG G+C C + T +A ER ++ + K Sbjct: 2 SEKSQYECSNCGYVSSVKLGRCPQCGQFGTFI-----VRKPIAEQERKVNFSYTKKPQKT 56 Query: 64 QKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQM 123 T E + VLGGG+ GS +L+GG PG GKSTL LQ L Sbjct: 57 TP-------------TFLPELNFVLGGGLKSGSVLLLGGEPGIGKSTLALQILGNA--DT 101 Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 +YV+ EE+ +QV RA R+GL N+N++SE+ + + + L+ +DS+Q + Sbjct: 102 DAVYVSSEETREQVLERAERIGL--RNINVVSESDL----GAVDLDNYGLICVDSLQTIR 155 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 D+ +PGS A V+E A YL ++AK ++V HVTK+G +AGP+ +EH +D + L Sbjct: 156 FGDM-GAPGSPAMVKEIAGYLVKWAKESNGIALIVAHVTKEGVIAGPRTVEHMVDVVLYL 214 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD S R L+ KNRFG + + M GL PS + +S D +G + V Sbjct: 215 EGDRTSDKRLLKLVKNRFGPSTDQILLEMQSSGL----TPSEVEVSGLDRNQTGLVLSAV 270 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 GTR V++ ALV S P+R++ NRL +L AV+ ++ L + D++V++ Sbjct: 271 NTGTRFEFVQVHALVTDSYGQIPKRLSSRYPNNRLLLLTAVMQKYLRLPLYKYDIYVDLT 330 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIR---PVPSGQERISEAA 420 V + D A++ A+ SSL++ P+ + +V+GEV L G+IR P + A Sbjct: 331 TDFFVNDYGVDAAIVAAVYSSLKEMPISGNTLVYGEVLLTGDIRSPHPETQLDRLVRGAQ 390 >UniRef50_C9M763 DNA repair protein RadA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M763_9BACT Length = 441 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 170/414 (41%), Positives = 241/414 (58%), Gaps = 5/414 (1%) Query: 46 ARNERLSGYAGSAGVAKVQKLSDISLEELP-RFSTGFKEFDRVLGGGVVPGSAILIGGNP 104 A + G +V I P R +G E DRVLGGG VPG +L+GG P Sbjct: 2 AEERPTVVQNRAGGAPRVLTPESIRDIPAPVRTPSGIGELDRVLGGGWVPGGVVLLGGQP 61 Query: 105 GAGKSTLLLQTLCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQIC 163 G GKSTLLLQ + A K +YV+GEES Q+ +RA RLG+ D L + T I++ Sbjct: 62 GIGKSTLLLQVCGAMTAAGSKVIYVSGEESAGQLGLRAARLGVLHDGLEVCCHTVIDEAL 121 Query: 164 LIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTK 223 + + L+V+DS+Q M D PG+ QVR A FAKT GV V+VGH+TK Sbjct: 122 QLVSDHA--LLVVDSVQAMRAQDEDGWPGTPTQVRAVAQRCLDFAKTSGVPTVLVGHITK 179 Query: 224 DGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNP 283 +G LAGP +LEH +D ++ G+ S +RTLR+ KNR+G +ELG+F M +GL EVS+P Sbjct: 180 EGRLAGPMLLEHMVDTVIMFSGEKTSLYRTLRASKNRYGGTDELGIFEMGGEGLVEVSDP 239 Query: 284 SAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 S ++ +R D SG ++ V+ EG+RPL+ EIQAL S A PRR+ +G+ N+L +LLA Sbjct: 240 SYLYWNRSDSTVSGVAMTVLLEGSRPLVAEIQALAAQSEFAYPRRMGMGVGANKLQLLLA 299 Query: 344 VLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLA 403 VL GL D++ NV GG++V + +ADLA+ A+ S++ P+ D + EVGLA Sbjct: 300 VLESRCGLPAGKSDLYCNVAGGLEVRDPAADLAVAAALASAVSGVPIGPDCCLLAEVGLA 359 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 GE+RPV + R+ EA + GFRR I+ + + +++ + L D L Sbjct: 360 GELRPVTALGSRLKEAERLGFRRVIISSR-EKEAPCGQLELIRLATLGDVLREL 412 >UniRef50_D0N9B5 DNA repair protein radA n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9B5_PHYIN Length = 412 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 130/357 (36%), Positives = 188/357 (52%), Gaps = 52/357 (14%) Query: 9 FVCNECGADYPRWQGQCSACHAWNTITE---------VRLAASPMVARNERLSGYAGS-- 57 F C CG + +WQGQCSAC W ++ AAS R +R ++ + Sbjct: 39 FRCQNCGQSFVKWQGQCSACSHWGSVESSKPSEPLFRQSNAASFTKNRPKRSVAWSRTSH 98 Query: 58 ----AGVAKVQKLSDISLEE-LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL 112 + +++++ L+ + R +E + VLGGG+V GS L+ GNPG GKST Sbjct: 99 ETFEENPPRALRMNEVELDTFVERIQLPERELNWVLGGGLVAGSLTLVAGNPGVGKST-- 156 Query: 113 LQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEE---- 168 + LYV+GEES+ QV MRA RLG +D+L + SET+++ + + E Sbjct: 157 ---------ERGVLYVSGEESVLQVRMRAERLGSVSDSLFVASETNLDSVFQLLEGGSRR 207 Query: 169 -------EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV 221 +V+DSIQ ++ D+ S G+V QV+E L R AK+R V ++++GHV Sbjct: 208 AVGDEGYHGFGAVVVDSIQTVYAEDILSPAGTVNQVKECTLRLLRLAKSRNVPVILIGHV 267 Query: 222 TKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVS 281 TK G +AGPKVLEH +D V L+GD S R LR KNRFG +E+GVF MT++GL+ + Sbjct: 268 TKSGDIAGPKVLEHIVDTVVQLEGDPQSARRFLRCQKNRFGNTSEVGVFNMTDEGLQPLP 327 Query: 282 NPSAIFLSRGDEVTSG--------------SSVMVVWEGTRPLLVEIQALVDHSMMA 324 NP F+S DE SV + EG RP+ +EIQAL + + Sbjct: 328 NPLTAFVSSHDEDDENPETREETELEPLDGCSVTIAMEGKRPIPLEIQALANRTQYN 384 >UniRef50_UPI0000382A4B COG1066: Predicted ATP-dependent serine protease n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382A4B Length = 305 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 112/246 (45%), Positives = 162/246 (65%) Query: 124 KTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183 + LYVTGEES QV +RA R+G L + +ET + + E +P L+V+DS+Q + Sbjct: 33 RVLYVTGEESAGQVRLRAERVGALAPGLLLAAETDLATVLGHIEATEPDLLVVDSVQTIA 92 Query: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 A V+ +PG V+QVRE AA L AK R + +++VGHVTKDGS+AGP+ LEH +D Sbjct: 93 SAQVEGAPGGVSQVREVAASLIAAAKARDLPVILVGHVTKDGSVAGPRTLEHLVDVVCQF 152 Query: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303 +GD SR R +R+ KNR+G +E+G F +TE G+ +++PS +FLS G+ V V Sbjct: 153 EGDRHSRLRLVRAVKNRYGPTDEVGCFDLTENGIVGLADPSGLFLSHTGAGVPGTCVTVT 212 Query: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 EG RPL +EIQ+LV S + NPRR G++ +RLA++LAV+HRH G+++ DQDV+ + V Sbjct: 213 LEGRRPLALEIQSLVVPSSLTNPRRTTSGVDSSRLAMILAVMHRHAGVRLVDQDVYASTV 272 Query: 364 GGVKVT 369 GG + Sbjct: 273 GGAQGD 278 >UniRef50_C1TLA8 Putative uncharacterized protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLA8_9BACT Length = 242 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 98/254 (38%), Positives = 138/254 (54%), Gaps = 13/254 (5%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAK + +VC+ECG G+C C W T+ L+ S ++ G Sbjct: 1 MAKKNEVRYVCSECGYVSLSPMGRCPGCGEWGTVEAEVLSVSTEGRKS----------GS 50 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + S + L+ R +G E DRV+GGG V G +L+GG PG GKSTLLLQ LA Sbjct: 51 SPLSPRSILGLKPPKRLPSGIGELDRVMGGGWVEGGVVLLGGQPGIGKSTLLLQVCGNLA 110 Query: 121 Q-QMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179 + K LYV+GEES QVA+RA RLG ++ L +L +E + L+VIDS+ Sbjct: 111 RSGSKVLYVSGEESASQVALRASRLGADSEGLELLCIADVEMALGSLNDHG--LVVIDSV 168 Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239 Q M PG+ +QVR TA AK++G+ +V+VGH+TK+G +AGP +LEH +D Sbjct: 169 QAMKDPGEGGWPGTPSQVRATAQRCIDTAKSKGIPMVLVGHITKEGRIAGPMLLEHMVDT 228 Query: 240 SVLLDGDADSRFRT 253 +L G +RT Sbjct: 229 VLLFSGRRRVSYRT 242 >UniRef50_B5AXB1 Protease (Fragment) n=171 Tax=cellular organisms RepID=B5AXB1_ECOLX Length = 191 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 190/190 (100%), Positives = 190/190 (100%) Query: 159 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV Sbjct: 1 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 60 Query: 219 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR Sbjct: 61 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 120 Query: 279 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 338 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL Sbjct: 121 EVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 180 Query: 339 AILLAVLHRH 348 AILLAVLHRH Sbjct: 181 AILLAVLHRH 190 >UniRef50_C1TS01 Putative uncharacterized protein (Fragment) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS01_9BACT Length = 222 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 100/220 (45%), Positives = 141/220 (64%), Gaps = 1/220 (0%) Query: 238 DCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSG 297 D +L GD S +RTLR+ KNR+G +E+G+F M E+GL V +PS ++ RGD+ G Sbjct: 1 DTVLLFSGDDGSPYRTLRATKNRYGGTDEVGLFQMGERGLNPVDDPSGLYWDRGDQSVPG 60 Query: 298 SSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD 357 ++ VV EG+R L+ E+QAL + A PRR A G N+L +LLAVL + GL + D Sbjct: 61 VALTVVMEGSRALVAEVQALAASTSFAYPRRTARGTSVNKLHLLLAVLQKRCGLTSSGLD 120 Query: 358 VFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 V+VNV GG+ + + ADLAL L++ SS DR LP D + GEVGL GEIRPV +R+ Sbjct: 121 VYVNVAGGMDLRDPGADLALALSLASSAMDRALPSDCCLLGEVGLVGEIRPVGRTGQRLR 180 Query: 418 EAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVF 457 EAA+ GFR A+V A ++AP GM + V+ L++A++ Sbjct: 181 EAARLGFRSAVVSAR-EKEEAPRGMDVMAVRSLAEAMARL 219 >UniRef50_B3PN08 Heat shock ATP-dependent protease n=2 Tax=Mycoplasma RepID=B3PN08_MYCA5 Length = 835 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 72/428 (16%), Positives = 148/428 (34%), Gaps = 69/428 (16%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------GL 146 LI G PG GK+TL L +Q + + G + ++ G+ Sbjct: 408 LTLI-GPPGTGKTTLAKSIAEALGRQFVKISLGGVKDESEIRGHRRTYVGALPGKIISGI 466 Query: 147 P----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD---------------- 186 ++ + +L E + L V+D Q + D Sbjct: 467 KKAGVSNPVILLDEIDKMSSDFRGDPLSALLEVLDPEQNTNFQDHYLDLEYDLSKVLFIA 526 Query: 187 ----VQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVM-VGHVTKDGSLAGPKVL 233 S P + R L TR A+T ++ ++ + +T+ +VL Sbjct: 527 TANSFDSIPAPLYD-RVEFLELSTYTLIEKTRIARTHLLSKILSLNALTEKQYQITDEVL 585 Query: 234 EHCIDCSVLLDGDADSRFRTL----RSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLS 289 + I G + + R L R R F + + +RE P ++ Sbjct: 586 AYIIKNYTRESGVRNLQ-RLLDSIARKIVVRILDKKVDKEFVIDKAIVREFLGP-ELYNE 643 Query: 290 RGDEVTSGSSVMVVW----EGTRPLLVEIQALVDHSMM-----ANPRRVAVGLEQNRLAI 340 +GDE + V+ G + +E+ + + V LA Sbjct: 644 KGDETQPKAGVVNALAYTAYGGTSMTIEVTTFPTTAKGALNLTGQLKDVMRESATISLAY 703 Query: 341 LLAVLHRHG--GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 + + + G + + ++V G ++ SA + A++S+L + +P + + Sbjct: 704 VRSNAEKFGIKDFDFENTSIHIHVPEGAIQKDGPSAGVTFTTAIISALSKKAVPNTIAMT 763 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GE+ L G++ P+ +E+ A++ G + +P N VP++ + ++ V+ Sbjct: 764 GEITLRGKVLPIGGLKEKSLAASQIGIKTIFIPKDNEKNLIDVPEEVKKDIKFVPVEYYD 823 Query: 452 DALSVFDD 459 + + Sbjct: 824 EIFKYIFE 831 >UniRef50_C1AB48 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB48_GEMAT Length = 813 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 146/449 (32%), Gaps = 71/449 (15%) Query: 71 LEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG 130 E R RV G GS + + G PG GK++L L ++ + + G Sbjct: 326 EEVKERILDHIAVLGRV---GTQQGSILCLVGPPGVGKTSLGRSIAKALGRRFVRMALGG 382 Query: 131 EESLQQVAMR--------------AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176 ++ A R + + +L E + L V+ Sbjct: 383 VRDEAEIRGHRRTYIGSMPGRILQAMRRAESMNPVILLDEIDKLGSDWRGDPAAALLEVL 442 Query: 177 DSIQV-----------------MHMADVQSSPGSVAQVR--ETAAYLTRFA--------- 208 D Q + + S G +R L + Sbjct: 443 DPEQNKAFNDHYLEVDYDLSQVLFVTTANSLSGIPEALRDRMEIIRLPGYLEGEKLAIAR 502 Query: 209 -----KTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLR-SHKNRFG 262 K G V V VT VL I G D R R S K Sbjct: 503 RYLVPKQLGANGVPVAQVT-----LADDVLPAMIRGWTRESGVRDLERRIARLSRKLARR 557 Query: 263 AVNELGVFAMTEQGLREVSNPSAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHS 321 + + + L + P E G + + + T L+EI+ V Sbjct: 558 SWADHTQVTVVRDELPALLGPIQHLDDEHALEDQVGVASGLAYTSTGGELLEIEVSVVPG 617 Query: 322 MMANPRRVAVG--LEQNRLAILLAVLHRHGGLQMA-----DQDVFVNVVGGV-KVTETSA 373 +G ++++ A L V R L ++ ++D+ V++ G SA Sbjct: 618 RGRVQLTGTLGDVIKESAAAALSYVRARASALGLSPDFYRERDIHVHLPAGATPKDGPSA 677 Query: 374 DLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN 433 +AL A+ S+L P+ D+ + GEV L G + P+ +E+ A +H + I+P N Sbjct: 678 GIALATALTSALTGIPVRGDIAMTGEVTLRGRVLPIGGVREKGVAAHRHRLKHVIIPQGN 737 Query: 434 ------VPKKAPEGMQIFGVKKLSDALSV 456 +P+ G++ VK + + L + Sbjct: 738 AKDLSELPEDVRNGVEWHIVKTMDEVLEL 766 >UniRef50_A5IYF2 Heat shock ATP dependent protease n=3 Tax=Bacteria RepID=A5IYF2_MYCAP Length = 996 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 68/424 (16%), Positives = 135/424 (31%), Gaps = 61/424 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------GL 146 + + G PG GK++L L + L + G ++ GL Sbjct: 555 ILTLVGPPGTGKTSLARSIAEALDKSYVKLSLGGLHDESEIRGHRKTYVGAMPGKIIKGL 614 Query: 147 PT----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV---- 197 + + L +L E + + L V+D Q + +++V Sbjct: 615 QSAGVSNPLILLDEIDKMSSDIKGDPTSAMLEVLDPEQNTKFQDNYIEHEYDLSKVLFIA 674 Query: 198 --------------RETAAYL--------TRFAKTRGVAIVMVGHVTK-DGSLAGPKVLE 234 R L + AK V +V+ K D + K LE Sbjct: 675 TANYYENIPAPLLDRVEIIELNSYTINEKIKIAKEHLVEVVLAQAGLKPDQFIIDDKALE 734 Query: 235 HCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREV---SNPSAIFL 288 I G + + R + + ++ F + + + E+ S Sbjct: 735 FIIKHYTAEAGVRSLKRNLDKIARKIVTKIVSGEKIDKFVIDQNNIPELLGTPKISESEK 794 Query: 289 SRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMM----ANPRRVAVGLEQNRLAILLAV 344 ++ S + + G L +E+ + V + L+ + A Sbjct: 795 EMQPQIGSVNGLAFTSIGGTTLQIEVSWFKSKQPGIRLTGQLKEVMQESAKIALSYVRAN 854 Query: 345 LHRHG--GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 + G + ++ V+V G V SA + A++S+L P+ Q++ + GE+ Sbjct: 855 AEKFGIKNVDFDTTEIHVHVPEGAVPKDGPSAGVTFTTALISALAKIPVSQEVAMTGEIT 914 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 L G++ + +E+ A K G + +P N +P++ E + V Sbjct: 915 LRGKVLEIGGLKEKSFAAFKKGIKTVFIPKNNEKNLSDIPEEVKEAINFIPVSHYEQIWE 974 Query: 456 VFDD 459 Sbjct: 975 HLFK 978 >UniRef50_C6NU33 DNA repair protein RadA (Fragment) n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU33_9GAMM Length = 189 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 109/192 (56%), Gaps = 9/192 (4%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 M++ K FVC ECG P+W G+C C AWN++ E R R++ +G + A Sbjct: 1 MSR-DKALFVCQECGGTSPKWLGRCPDCGAWNSLVEQR------SERSQVRAGSSAYAVA 53 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 + + L+ I+++ R TG E DRVLGGG+V G+AIL+GG PG GKSTL+LQ L+ Sbjct: 54 SSPEYLNAIAVDATTRQHTGLGELDRVLGGGLVAGAAILLGGEPGIGKSTLMLQIAEGLS 113 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180 + + LYVTGEES QVA+RA RL + + + +++E E I + + I S Sbjct: 114 RSQRVLYVTGEESSAQVALRARRLRVQAETIRVVAENRWELIADFWSRKPSVVWWIHSTS 173 Query: 181 V--MHMADVQSS 190 +H D+ S+ Sbjct: 174 THSLHRPDLASA 185 >UniRef50_B9LMB1 ATP-dependent protease La n=3 Tax=Chloroflexi (class) RepID=B9LMB1_CHLSY Length = 825 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 147/434 (33%), Gaps = 65/434 (14%) Query: 88 LGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------- 140 L G + G + G PG GK++L L ++ + G ++ Sbjct: 361 LAGNKMRGPILCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGA 420 Query: 141 -------AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPG 192 A + + +L E I + L V+D Q P Sbjct: 421 LPGRIIQAMKTAKSRSPVYILDEVDKIGIDFRGDPTSALLEVLDPEQNNAFSDHYLELPF 480 Query: 193 SVAQV--RETAAYLTRF---AKTRGVAIVMVGHVTKD-GSLAGP--------------KV 232 +++V TA L + R I + G+ + +A Sbjct: 481 DLSKVIFIATANQLEPIPLPLRDRMEIIEISGYTEDEKMEIARGFLIPKQREFHGLREDQ 540 Query: 233 LEHCIDCSVLL--DGDADSRFRTL--------RSHKNRFGAVNE-----LGVFAMTEQGL 277 +E + L + ++ R L R + +E + F + E + Sbjct: 541 IEFTDGAIIKLIREYTREAGVRGLEREIASLCRKVARKVAEQSEATDGSVQKFVIDEAAV 600 Query: 278 REVSNPSAI---FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE 334 E P + DEV + V G L +E+ + ++ ++ Sbjct: 601 LEYLGPERFTFGLVEEKDEVGVATGVAWTSAGGDILNIEVLPFKGKGQLQLTGQLGEVMK 660 Query: 335 QNRLAILLAVLHRHGGLQ-----MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDR 388 ++ A + V R + ++ +++ G V SA + L A++S+L Sbjct: 661 ESAQAAVSYVRSRAADFGIDPAIFEETNIHIHIPEGSVPKDGPSAGITLTTALISALTGT 720 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGM 442 P+ +D+ + GEV L G++ P+ +E+ A + G R I+P N +P+K + Sbjct: 721 PVRRDVAMTGEVTLRGKVLPIGGLKEKTLAAHRAGIRTFILPKENAKDISELPEKVRREL 780 Query: 443 QIFGVKKLSDALSV 456 + V + + L + Sbjct: 781 NLIPVSSMDEVLQI 794 >UniRef50_O84348 ATP-dependent protease La n=15 Tax=Chlamydiales RepID=LON_CHLTR Length = 819 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 78/461 (16%), Positives = 157/461 (34%), Gaps = 75/461 (16%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L DI L S G ++ G + GS I + G PG GK+++ L ++ Sbjct: 363 LEDIKQRILELISVG-----KLANG--MKGSIICLVGPPGVGKTSIGRSIAKVLHRKFFR 415 Query: 126 LYVTGEESLQQVAMRAHRL--GLPTDNLNMLSETSIEQICLIAEEE------------QP 171 V G ++ +P + L ++ I ++ +E Sbjct: 416 FSVGGMRDEAEIKGHRRTYIGAMPGKLVQALKQSQIMNPVIMIDEVDKIGSSYHGDPASA 475 Query: 172 KLMVIDSIQV-------------------MHMADVQSSPGSVAQVRETAAYLTRFA---K 209 L V+D Q + A+V S R L+ + K Sbjct: 476 LLEVLDPEQNKDFLDHYLDVRVDLSNVLFILTANVLDSIPDPLLDRMEVLRLSGYILEEK 535 Query: 210 TRGVAIVMVGHVTKDGSLA------GPKVLEHCIDCSVLLDGDA------DSRFR--TLR 255 + +V K+ L+ P+ L+H I+ G R L+ Sbjct: 536 LQIATKYLVPRARKEMGLSAQNVTFQPEALKHMINNYAREAGVRTLNENIKKVLRKVALK 595 Query: 256 SHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR-GDEVTSGSSVMVVWEGTRPLLVEI 314 +N+ +++ F +T + L++ R ++ G + + W + I Sbjct: 596 IVQNQEKNLSKKSRFTITPKNLQDYLGKPVFSSDRFYEKTPVGVATGLAWTSLGGATLYI 655 Query: 315 QALVDHSMMANPRRVAVGLEQNRLA--------ILLAVLHRHG-GLQMADQD-VFVNVVG 364 +++ S G + + L + L R+ G ++ V +++ Sbjct: 656 ESVQVPSSSGKADMHLTGQAGDVMKESSQIAWTYLHSALERYAPGQPFFEKSQVHIHIPE 715 Query: 365 GV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 G SA + ++ +++S L D P+ +L + GE+ L G + + +E++ A + Sbjct: 716 GATPKDGPSAGITMVTSLLSLLLDVPVLNNLGMTGELTLTGRVLGIGGIREKLIAARRSK 775 Query: 424 FRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 I P N +P +G+++ V D + Sbjct: 776 LNILIFPEDNRRDYDELPAYLKKGLKVHFVTHYDDVFKIAF 816 >UniRef50_P43864 ATP-dependent protease La n=107 Tax=Bacteria RepID=LON_HAEIN Length = 803 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 69/425 (16%), Positives = 151/425 (35%), Gaps = 63/425 (14%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------ 140 V G + + G PG GK++L ++ + + G ++ Sbjct: 347 VKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAEIRGHRKTYIGALPGKL 406 Query: 141 ---AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV----MHMADVQSSPGS 193 ++G+ + L +L E + + L V+D Q H +V Sbjct: 407 IQKMAKVGVK-NPLFLLDEIDKMASDMRGDPASALLEVLDPEQNTTFNDHYLEVDYDLSD 465 Query: 194 VAQV--------------RETAAYLTRFAK--TRGVAI--VMVGHVTKDGSLAGPKVLEH 235 V V R L+ + + +A+ ++ + ++G G +E Sbjct: 466 VMFVATSNSMNIPGPLLDRMEVIRLSGYTEDEKLNIAMRHLLAKQIERNGLKKGELTVEE 525 Query: 236 CIDCSVLLDGDADSRFRTL---------RSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 ++ ++ R L ++ KN +L + L + Sbjct: 526 SAILDIIRYYTREAGVRGLEREISKICRKAVKN-LLVNPKLKSITVNSDNLHDYLGVKRF 584 Query: 287 -FLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 F + G + W G L +E ++V ++ + ++++ A + Sbjct: 585 EFGKADTQNRIGEVTGLAWTEVGGDLLTIETASVVGKGKLSFTGSLGDVMKESIQAAMTV 644 Query: 344 VLHR--HGGLQMA---DQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 V R G+ +D+ ++V G SA +A+ A++S L P+ D+ + Sbjct: 645 VRARADKLGINAEFHEKRDIHIHVPDGATPKDGPSAGIAMCTALISCLTGNPVRADVAMT 704 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GE+ L G++ P+ +E++ A + G + ++P N +P+ + + I V+ + Sbjct: 705 GEISLRGKVLPIGGLKEKLLAAHRGGIKTVLIPKENVKDLEEIPENVKQNLAIHAVETID 764 Query: 452 DALSV 456 + L Sbjct: 765 EVLGF 769 >UniRef50_D1CFP7 ATP-dependent protease La n=4 Tax=Bacteria RepID=D1CFP7_THET1 Length = 846 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 70/424 (16%), Positives = 142/424 (33%), Gaps = 60/424 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------ 144 + G PG GK++L L ++ + + G ++ Sbjct: 414 ILCFVGPPGVGKTSLGQSIAKALGRKFVRMSLGGIRDEAEIRGHRRTYIGAMPGRIIQSI 473 Query: 145 --GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV---- 197 +D + ML E + + L V+D Q + P +++V Sbjct: 474 MRAESSDPVFMLDEVDKISVGFQGDPAAALLEVLDPAQNHTFRDNYLDIPFDLSKVMFIA 533 Query: 198 --------------RETAAYLTRFAKTRGVAI---VMVGHVTKDGSL------AGPKVLE 234 R L+ + + + I ++ K L + ++ Sbjct: 534 TANTLDTIPAPLRDRMEIIELSGYTEDEKIHIARQYLIPRQLKANGLKPEEVDFTDEAIK 593 Query: 235 HCIDCSVLLDGDADSRFRTLRSHK--NRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGD 292 I G + + R A E G F +T+ L E + Sbjct: 594 SIIRGYTREAGVRNLERHIASVLRKLARRIAEGEAGPFQVTQDNLGEFLRRPYFEYETAE 653 Query: 293 E-VTSGSSVMVVWEGTRPLLVEIQALVDHSMMA---NPRRVAVGLEQNRLAILLAVL--H 346 G + +VW +V ++A + S ++ + ++ A L + Sbjct: 654 RIDRPGIATGLVWTPVGGDIVYVEASITPSEEDRLILTGQLGDVMRESAQAALTYIRASM 713 Query: 347 RHGGLQ---MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 GL+ + + V ++V G SA + + A+ S+ +P+ D+ + GE+ L Sbjct: 714 SMLGLESSALDHKTVHIHVPAGAQPKDGPSAGVTMATALASAAIGKPVRSDVAMTGEITL 773 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 G++ PV +E++ A + G R I+P N +P++ + M+ V + L Sbjct: 774 RGKVLPVGGIKEKVLAAHRAGIRTVILPKRNERDLEDLPEELRKEMEFVFVDSVDQVLQT 833 Query: 457 FDDL 460 +L Sbjct: 834 ALNL 837 >UniRef50_O66605 ATP-dependent protease La n=4 Tax=Aquificales RepID=LON_AQUAE Length = 795 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 75/425 (17%), Positives = 143/425 (33%), Gaps = 69/425 (16%) Query: 96 SAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------- 144 + G PG GK++L L ++ + + G ++ Sbjct: 364 QILAFVGPPGVGKTSLGRSIAEALGRKFVRIALGGIRDEAEIRGHRRTYVGAMPGRIIQA 423 Query: 145 ---GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADV-QSSPGSVAQV--- 197 + + ML E I + L V+D Q D+ P +++V Sbjct: 424 IKQAGTKNPVIMLDEIDKLAISFQGDPAAALLEVLDPEQNKKFTDLYIGIPFDLSEVIFI 483 Query: 198 ---------------RETAAYLTRF--------AKTRGVAIVMVGHVTKDGSLAGPK--V 232 R L+ + AK + ++ H + + Sbjct: 484 CTGNRADTIPTPLLDRMELIMLSGYSEEEKLFIAKKHLIPKLIPLHGFSPEEIEFTDEAI 543 Query: 233 LEHCIDCSVLLDGDADSRF------RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 LE I G + + R + K + E G F +T + +R++ Sbjct: 544 LE-IIRGYTREAGVRNLQRQISAVLRKIAVKKLQG----EKGPFNITPELVRKLLGVPRY 598 Query: 287 FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG--LEQNRLAILLAV 344 R + G + + W ++ I+A + ++G ++++ A L + Sbjct: 599 RPEREKKPLVGVATGLAWTEVGGEIMFIEATKMKGKGSLVLTGSLGDIMKESAQAALSYI 658 Query: 345 LHRHGGLQ-----MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFG 398 + + DV V+V G V SA +A+ A++S D P+ D+ + G Sbjct: 659 RSKAEDYGIDPDIFSQVDVHVHVPEGAVPKDGPSAGVAIATALLSLFTDIPVRMDVAMTG 718 Query: 399 EVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQIFGVKKLS 451 E+ L G + PV +E+I A + I+PA N +P+ E M + V L Sbjct: 719 EITLRGRVLPVGGLKEKILAAKRAEIYEVILPAKNKDEVMEELPEYVREKMTLHFVDNLE 778 Query: 452 DALSV 456 + + Sbjct: 779 EVFKI 783 >UniRef50_A7HK39 ATP-dependent protease La n=11 Tax=Thermotogaceae RepID=A7HK39_FERNB Length = 810 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 73/419 (17%), Positives = 148/419 (35%), Gaps = 61/419 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR---------------A 141 I G PG GK++L + ++ + + G ++ Sbjct: 371 IICFVGPPGVGKTSLAKSIARAMNRKFGRMSLGGLRDEAEIRGHRRTYVGAMPGRIMQLI 430 Query: 142 HRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV--- 197 +LG+ + + +L E I + L V+D Q + P +++V Sbjct: 431 RKLGVK-NPVILLDEIDKMGISFQGDPASALLEVLDPEQNKEFVDHYIELPYDLSEVLFV 489 Query: 198 ---------------RETAAYLTRF--------AKTRGVAIVMVGHVTKDGSLAGPK--V 232 R ++ + AK + + V K + K Sbjct: 490 TTANVLYTIPPALRDRMEVIEISSYTDVEKFYIAKNYIIPKIESEFVEKADEIFSFKDTA 549 Query: 233 LEHCIDCSVLLDGDADSRFRTLR--SHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 ++ I+ L G + R +R K A+ ++ + + E PS I Sbjct: 550 IKKIINEYTLEPGVRELE-REIRSVVRKATLDAIKTGKKIVISPEKVTEYLGPSKIKDED 608 Query: 291 G-DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVLHRH 348 ++ G + + W + I++ + +G + + + I L++ + Sbjct: 609 KLEKPMIGVTTGLAWTPNGGTTLYIESTLIPGNGGLIITGQLGDVMKESVRIALSLARKI 668 Query: 349 GG----LQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLA 403 G + D+ V+V G V SA + + A+VS +++ P+ D+ + GE+ L Sbjct: 669 VGDEYAEKFTKNDIHVHVPEGAVPKDGPSAGVTITTALVSVVKNIPVRNDIAMTGEITLR 728 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 G + PV +E++ A + G I+P N VP+ M+ V+ + + L V Sbjct: 729 GRVLPVGGIKEKVMAAYRKGIYHVILPKKNEVDIEKVPEVVRTKMKFTFVETIEEVLEV 787 >UniRef50_Q1IWD7 ATP-dependent protease La n=9 Tax=Deinococci RepID=Q1IWD7_DEIGD Length = 813 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 67/425 (15%), Positives = 138/425 (32%), Gaps = 59/425 (13%) Query: 92 VVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR----------- 140 V+ +++ G PG GK++L L ++ + + G ++ Sbjct: 364 VLRAPILVLVGPPGVGKTSLGKSIARSLNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGR 423 Query: 141 ---AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQ 196 A + T+ + +L E + L V+D Q D P ++Q Sbjct: 424 IIQAMKTAGVTNPIILLDEIDKMSSDWRGDPSSAMLEVLDPEQNHTFQDHYLEVPYDLSQ 483 Query: 197 V------------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGP 230 V R + A+ V + H Sbjct: 484 VMFITTANTLQTIPRPLLDRMEVINIPGYTQAEKVEIARRYRVPRQLRSHGLTGKLEITD 543 Query: 231 KVLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLRE-VSNPSAI 286 L ++ G + + R GV + + + P Sbjct: 544 AALNRIVEEYTAESGVRNLDRQISKLARKAARELLEHPWEGVKVIDAADIPAYLGVPLHR 603 Query: 287 FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVL 345 E G + + W ++ ++AL ++G + + + +A L Sbjct: 604 PDRMEKEPQVGVAQGLAWTSVGGTMLLVEALATPGSGKISMTGSLGDVMKESVQAAVAYL 663 Query: 346 HRHGGL-----QMADQ-DVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFG 398 H + + D+ V+ G SA + + A++S++ RP+ D+ + G Sbjct: 664 RAHAHQYGADPEFHKKLDLHVHFPDGATPKDGPSAGITIATAVISAVTGRPVRLDVAMTG 723 Query: 399 EVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSD 452 E+ L G + P+ +E++ A + G R I+P N VP+ ++I V+++ + Sbjct: 724 EISLRGRVLPIGGVKEKLLAAHQGGIREVIIPKDNEPNLQEVPESIRGELRIHAVERVDE 783 Query: 453 ALSVF 457 L + Sbjct: 784 VLDLV 788 >UniRef50_P0A9M1 ATP-dependent protease La n=430 Tax=cellular organisms RepID=LON_ECOL6 Length = 784 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 143/428 (33%), Gaps = 69/428 (16%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------ 140 + G + + G PG GK++L ++ + + G ++ Sbjct: 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKL 406 Query: 141 ---AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMA----DVQSSPGS 193 ++G+ + L +L E + + L V+D Q + + +V Sbjct: 407 IQKMAKVGVK-NPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 Query: 194 VAQV--------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPK 231 V V R L AK ++ + ++ G Sbjct: 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRH----LLPKQIERNALKKGEL 521 Query: 232 VLEHCIDCSVLLDGDADSRFRTLR--SHKNRFGAVNEL------GVFAMTEQGLREVSNP 283 ++ ++ ++ R L K AV +L + L + Sbjct: 522 TVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 Query: 284 SAI-FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAIL 341 + +E G + W L+ I+ ++G + Q + Sbjct: 582 QRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAA 641 Query: 342 LAVLHRH---GGLQ---MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDL 394 L V+ G+ +D+ V+V G SA +A+ A+VS L P+ D+ Sbjct: 642 LTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADV 701 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVK 448 + GE+ L G++ P+ +E++ A + G + ++P N +P + I VK Sbjct: 702 AMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVK 761 Query: 449 KLSDALSV 456 ++ + L++ Sbjct: 762 RIEEVLTL 769 >UniRef50_Q1NXJ5 Peptidase S16, ATP-dependent protease La n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NXJ5_9DELT Length = 827 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 78/422 (18%), Positives = 148/422 (35%), Gaps = 59/422 (13%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH----------- 142 G + G PG GK++L + + + + G ++ Sbjct: 398 RGPILCFVGPPGVGKTSLGQSIARSMGRNFVRISLGGVRDEAEIRGHRRTYIGALPGRII 457 Query: 143 ---RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD--VQSSPGSVAQV 197 R + L ML E + + L V+D Q +D ++ + + Sbjct: 458 QSLRKAGAHNPLFMLDEVDKLGMDFRGDPSSALLEVLDPEQNFSFSDHYLEIAFDLSKVM 517 Query: 198 RETAAYLTRF----AKTRGVAIVMVGHVTKDG-SLAG----PKVLEHCIDCSVLLDGDAD 248 T A L K R I + G+ + +A PK LE + L + D Sbjct: 518 FITTANLLDNIPGPLKDRMEVIELTGYTEDEKLHIARRHLLPKQLEANALSADDLQINDD 577 Query: 249 SRFRTLRSHKNRFGAVN-------------------ELGVFAMTEQGLREVSNPSAIFLS 289 +RS+ G N G + L + P F Sbjct: 578 GLRGIIRSYTREAGVRNLEREIGGVCRGVARQIVEGHSGRLEVGPDDLAQYLGPLKFFAE 637 Query: 290 RGDEV-TSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 G + + W G L +E + + ++ ++++ A L + Sbjct: 638 TKARTWGPGLATGLAWTPVGGDLLFIETARMQGKGELTLTGKLGEVMKESATAALTYIRS 697 Query: 347 --RHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 + G+ A D V+V G + A +A+++++VS L R + +++ + GE+ Sbjct: 698 HAKELGIDEELFAKSDFHVHVPEGAIPKDGPLAGVAMVVSLVSQLTGRAVSREVAMTGEI 757 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G++ PV +E++ A + G R I+P N +P E +++ V +++AL Sbjct: 758 TLRGDVLPVGGVKEKVVAAVRAGIPRVILPRLNDKDLDELPAGTREQLEVHLVNDINEAL 817 Query: 455 SV 456 V Sbjct: 818 EV 819 >UniRef50_B1AIY7 ATP-dependent protease La n=15 Tax=Ureaplasma RepID=B1AIY7_UREP2 Length = 791 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 77/452 (17%), Positives = 141/452 (31%), Gaps = 105/452 (23%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G I + G PG GK++L+ L ++ + + G ++ Sbjct: 357 KGPIICLVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEIRGHRKTYVGAMPGRII 416 Query: 145 -GLP----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 G+ + L +L E + L V+D Q + +++V Sbjct: 417 KGMKKAGVINPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSKVM 476 Query: 198 -----------------RETAAYL--------TRFAKTR--------------------G 212 R L AK+ Sbjct: 477 FMATANYYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFTDD 536 Query: 213 VAIVMVGHVTKD-GSLAGPKVLEHCIDCSV-------------LLDGDADSRFRTLRSHK 258 ++ H TK+ G + L H + + L D + L K Sbjct: 537 ALDFIINHYTKEAGVRELDRQLGHIVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGKIK 596 Query: 259 NRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALV 318 F E + + G+ + + + T+G V G Sbjct: 597 FDFNKKEETTIPGIV-NGMAYTAAGGDLLPIEVNHSTNGKGGNVTITGN----------- 644 Query: 319 DHSMMANPRRVAVGLEQNRLAILLAVLHRHG----GLQMADQDVFVNVV-GGVKVTETSA 373 M VA+G + A ++G + + D+ V+V GG+ SA Sbjct: 645 LEKTMNESVSVALGFVK-------ANADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGPSA 697 Query: 374 DLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA-- 431 +A+ A++SSL RP+ L + GE+ L G + + +E++ A + G R I+P Sbjct: 698 GIAITTAIISSLSQRPVRTTLSMTGEIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDD 757 Query: 432 ----ANVPKKAPEGMQIFGVKKLSDALSVFDD 459 +VPK + ++I VK + ++ Sbjct: 758 ERYLEDVPKYILDDIKIHLVKHYDEVYNIVFG 789 >UniRef50_Q04VA7 ATP-dependent protease La n=6 Tax=Leptospira RepID=Q04VA7_LEPBJ Length = 825 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 68/422 (16%), Positives = 136/422 (32%), Gaps = 55/422 (13%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------ 140 G+ +L+ G PG GK+++ + ++ V G ++ Sbjct: 363 EKGTILLLVGPPGVGKTSIARSIAEAMGRKFFRFSVGGMRDEAEIKGHRRTYIGSMPGKI 422 Query: 141 --AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV 197 A R+ D + +L E + + L V+D Q P ++ V Sbjct: 423 ISALRITKEKDCVILLDEIDKLATGIQGDPASAFLEVLDPEQNKNFRDHYLDLPFDISNV 482 Query: 198 R-----ETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL---------------EHCI 237 T ++R R I + G++T + + L E Sbjct: 483 FFIATANTLDSISRILLDRMEIINLSGYITDEKVQIFQRYLWKKVLAKNGVTSYGIEFDK 542 Query: 238 DCSVLL--DGDADSRFRTLRSHKNRFGAVNELGVFA-------MTEQGLREVSNPSAIFL 288 V L +S R L ++ + + + E+ L Sbjct: 543 KAVVSLIDSYSRESGVRGLEKVTDKLVRKIAMKIVKKEPFPKVILEKDLETFLGVPKFTN 602 Query: 289 SRG-DEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL-LAVLH 346 R G+++ + W + I+AL +G + + L+ + Sbjct: 603 ERMIRTSVPGTALGLAWTSVGGATLLIEALFVKGKGGILLTGMIGKTMEESSNIALSYIK 662 Query: 347 RHGGLQ--MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLA 403 D+ + ++V G SA + + A++S + + + GE+ L Sbjct: 663 NFLSKDELFKDRMIHLHVPDGATPKDGPSAGITMATAILSLALNTKVKAGYGMTGELTLT 722 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVF 457 GE+ + +E+I A + G + I P N +P +GM F V + + ++ Sbjct: 723 GEVLAIGGLREKIVAAKRVGIYKIIYPKDNLQHLEEIPDYVKKGMSFFPVSRYEEVAAMV 782 Query: 458 DD 459 D Sbjct: 783 FD 784 >UniRef50_C1AAY4 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAY4_GEMAT Length = 835 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 81/434 (18%), Positives = 152/434 (35%), Gaps = 66/434 (15%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL- 144 R L GG G + G PG GK++L + + + V G ++ Sbjct: 353 RKLRGGDPTGPILCFVGPPGTGKTSLGEAIAKSIDRAFYRISVGGVRDEAEIRGHRRTYV 412 Query: 145 ----GLPTDNLNMLSETS----IEQICLI------AEEEQPKLMVIDSIQ-VMHMADVQS 189 G+ L + I++I + + L V+D Q + + Sbjct: 413 GAMPGMLIQALRRVEVRDPVIMIDEIDKMSSGGSGGDPTAAMLEVLDPSQNTTFVDHYLN 472 Query: 190 SPGSVA-QVRETAAY-LTRF---AKTRGVAIVMVGHVTKD-----GSLAGPKVLE----- 234 P ++ + A L + R I + G+ ++ P++LE Sbjct: 473 LPFDLSSTLFICTANNLFDIPGPLRDRMEVIRIAGYTIEEKVEIAQRYLIPRLLEDHGLT 532 Query: 235 ----HCIDCSVLLDGDADSRFRTLRSH----------KNRFGAVNELGVFAMTEQGLREV 280 H + + SR LR+ + R A + + + ++ Sbjct: 533 ESDLHIPESVLGFITSRYSREAGLRTFERSIASIMRKRARAKADGDDTAWEINAVRTEDI 592 Query: 281 SNPSAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL--EQNR 337 + + E G+ + W T L+ I+AL N + G + R Sbjct: 593 LGAPRFPMEEAEKEPEIGAVTGLAWTSTGGELMTIEALRMP---GNGKLTVTGQLGDVMR 649 Query: 338 LAILLA---VLHRHGGL-----QMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDR 388 ++ A V R L + + D+ ++ G + SA +A+ LA+ S+L R Sbjct: 650 ESVDAAYSFVRSRAQALGIEETEFREADLHLHFPAGSIPKDGPSAGIAVTLALASALSRR 709 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGM 442 P+ +DL + GEV L G + + +E++ A + G R I+P N VP++ M Sbjct: 710 PVRRDLALTGEVTLRGRVLEIGGVKEKVLAAYRAGLREVILPKGNEKDVRDVPQEVRAKM 769 Query: 443 QIFGVKKLSDALSV 456 + + L + Sbjct: 770 AFTFANSMDEVLHL 783 >UniRef50_Q3JBB6 ATP-dependent protease La n=2 Tax=Nitrosococcus oceani RepID=Q3JBB6_NITOC Length = 772 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 67/420 (15%), Positives = 143/420 (34%), Gaps = 63/420 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG--EES-------------LQQVAMRA 141 + G PG GK+++ L ++ + + + G +ES ++ Sbjct: 347 ILCFVGPPGVGKTSVGQSMARALGRKFERMSLGGLHDESELRGHRRTYIGAMPGRIIRAI 406 Query: 142 HRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV--- 197 R G + L ML E + L ++D Q + P ++++ Sbjct: 407 RRTGYQ-NPLLMLDEIDKLGRDFRGDPAAALLEILDPAQNAEFHDNYLDLPFDLSKIFFV 465 Query: 198 ---------------RETAAYL---TRFAKTRGVAIVMVGHVTKDGSLAG------PKVL 233 R L + K ++G ++ L+ + L Sbjct: 466 TTANTLDTIPRPLLDRMEILRLPGYSDEEKQHIARRYLIGRQIREAGLSEIQLSIPDETL 525 Query: 234 EHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 + I G + R R + A + +T Q L E+ P F Sbjct: 526 SYLIRRYTREAGVRELERMLGRIARKVATQV-ATGQTQPVTVTPQDLVELLGPERFFAEE 584 Query: 291 -GDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVLHRH 348 ++ G + + W ++ ++A + +G + Q + L Sbjct: 585 MRQQLAPGVAAGLAWTEAGGDVLYVEAALLPEGKGMTLTGQLGSIMQESAKAAQSYLWSR 644 Query: 349 GG------LQMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 + + V ++V G + SA + + A+ S+ +P+ D + GE+ Sbjct: 645 AEELNIDQKTIRESGVHIHVPAGAIPKDGPSAGVTMASALTSAYAHQPVRSDTAMTGEIT 704 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 L+G + PV +E++ A + G +R I+P N +P+ + +Q +++ + L+ Sbjct: 705 LSGLVLPVGGIKEKVLAAHRSGIQRIILPKENEKDLREIPEHVRQSIQFILARRIEEVLA 764 >UniRef50_C9XRQ1 ATP-dependent protease La n=12 Tax=Clostridiales RepID=C9XRQ1_CLODC Length = 789 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 63/424 (14%), Positives = 146/424 (34%), Gaps = 64/424 (15%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G I + G PG GK++++ L ++ + + G ++ Sbjct: 356 KGPIICLVGPPGTGKTSIVKSIARALNRKFVRISLGGVRDEAEIRGHRRTYVGSIPGRII 415 Query: 145 -GLPT----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 G+ + + + E + L V+D Q + P ++++ Sbjct: 416 NGVKEAQTKNPVFLFDEIDKMAADYKGDPASAMLEVLDPEQNKDFVDHYLEIPFDLSKIL 475 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSL-AGPK 231 R + A+ + + H K+ + + Sbjct: 476 FVTTANSLGNIPRPLLDRMEVIEVSGYIEEEKLNIARKYLLPKQIKEHALKENFIKIDDE 535 Query: 232 VLEHCIDCSVLLDGDADSRFRTL----RSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 L I+ G RT+ R ++ L + + L E +F Sbjct: 536 TLRSIINHYTREAGVRTLE-RTIGKICRKVAKKYVEDPTLEEVVINKSDL-ETYLGKDMF 593 Query: 288 LSRGDEVTSGSSVMVVWE----GTRPLLVEIQALVDHSMMANPRRVAVGLEQNR---LAI 340 + EV ++ G L VE+ L + ++ ++++ ++ Sbjct: 594 KYQLAEVNPQIGLVNGLAWTAVGGVTLEVEVNVLKGKGEIVLTGKLGDVMKESAKTGISY 653 Query: 341 LLAVLHRH-GGLQMAD-QDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 + +++ + + D+ +++ G V SA + + LA++S+L RP+P ++ + Sbjct: 654 IRSIVDKFDIDPEFYKTNDIHIHIPEGAVPKDGPSAGITMALAVISALTKRPVPGNIAMT 713 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GE+ L G + V +E++ A + G + ++P +P+ E M+ V+ + Sbjct: 714 GEITLRGRVLAVGGVKEKLLAAHRAGITKVLIPKECEADLDEIPENVKEKMEFVLVEHMD 773 Query: 452 DALS 455 + L Sbjct: 774 EVLE 777 >UniRef50_B4UAX6 ATP-dependent protease La n=18 Tax=Bacteria RepID=B4UAX6_ANASK Length = 819 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 65/434 (14%), Positives = 147/434 (33%), Gaps = 72/434 (16%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-------- 144 + G + G PG GK++L + ++ + + G ++ Sbjct: 356 IRGPILCFVGPPGVGKTSLAKSIARSMNRRFVRISLGGVRDEAEIRGHRRTYIGALPGKI 415 Query: 145 ------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM---------------- 182 + + +L E + L V+D Q Sbjct: 416 IQSLKKAGSGNPVFLLDEVDKMSTDFRGDPSAALLEVLDPEQNFNFNDHYLDLDYDLSKV 475 Query: 183 -HMADVQSSPGSVA--QVRETAAYL--------TRFAKTRGVA----IVMVGHVTKDGSL 227 + + G Q R L A+ + + + HV + Sbjct: 476 MFICTANTMAGIPLPLQDRMEVIRLAGYTDLEKLSIAQRYLIPKQKEVNGLEHVPVEFKR 535 Query: 228 AGPKVLEHC---IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPS 284 + + L H L+ + + R + + G V+ + +TE+ +++ P Sbjct: 536 SAMRALVHKYTKESGVRSLEREIGAICRKIAKDVLKTGQVDGKT-YVVTERMVQKYLGPP 594 Query: 285 AI-FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH-----SMMANPRRVAVG----LE 334 + + ++ G + + W L+ ++A V ++ + G + Sbjct: 595 RYRYGTAEEQDQVGLTTGLAWTELGGELLTVEAQVMPGKGKLTITGKGKLTITGKLGEVM 654 Query: 335 QNRLAILLAVLHRHGGL------QMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRD 387 Q ++ + L + + D+ V+V G + SA + + +VS+L Sbjct: 655 QESAQAAMSYVRSRAELLGLDKRFLENVDIHVHVPEGAIPKDGPSAGITMATTLVSALCR 714 Query: 388 RPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEG 441 P+ +D+ + GE+ L G + P+ +E++ A + G ++ ++P N +P++ E Sbjct: 715 IPVRKDVAMTGEITLRGRVLPIGGLKEKVLAAHRGGIKKVLIPKENQKDIREIPRRVREK 774 Query: 442 MQIFGVKKLSDALS 455 +QI V + L Sbjct: 775 LQIVPVDHADEVLR 788 >UniRef50_A9B3R2 ATP-dependent protease La n=8 Tax=Bacteria RepID=A9B3R2_HERA2 Length = 815 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 71/433 (16%), Positives = 139/433 (32%), Gaps = 61/433 (14%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL- 144 R+L G + G PG GK++L L ++ L + G ++ Sbjct: 349 RMLAGDSTKSPILCFVGPPGVGKTSLGRSVAEALGREFVRLSLGGVHDEAEIRGHRRTYI 408 Query: 145 -------------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSS 190 + + ML E + L V+D Q Sbjct: 409 GAMPGRIIQTMKDAGTINPVFMLDEIDKLGNDFRGDPAAALLEVLDPEQNNTFADHYLDL 468 Query: 191 PGSVAQV------------------RETAAYLTRFAKTRGVAI----VMVGHVTKDGSLA 228 P ++++ R L + + V I ++ + +G Sbjct: 469 PYDLSKIMFITTANMLDPIDEPLLDRMEIVELPGYIEEEKVQIARKFLIPKQIEANGLKQ 528 Query: 229 GPKVLEHCIDCSVLLDGDADSRFRTL--------RSHKNRFGAVNELGVFAMTEQGLRE- 279 P + ++ ++ R L R R +T L + Sbjct: 529 HPITISDEALRQIIRTYTWEAGVRNLEREIGGICRKIARRVAEKKRYPR-RITPTMLTDF 587 Query: 280 VSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRL 338 + P + D G + +VW +V I+ + +G + Q Sbjct: 588 LGQPPFDYSRANDRDEIGVATGMVWSSNGGDVVAIETAIVDGKGTTTLTGQLGDVMQESA 647 Query: 339 AILLAVLH---RHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLP 391 L+ R G+ D+ ++V GGV SA + L +++S+L RPL Sbjct: 648 QAALSYARASSRRLGIDGKRFEKIDIHIHVPEGGVPKDGPSAGITLACSVISALTHRPLR 707 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV------PKKAPEGMQIF 445 +D+ + GE+ L G + P+ +++I A + G ++P N+ P + + Sbjct: 708 RDVAMTGEITLRGRVLPIGGLRDKILGAYRAGITTMLIPKKNLRDLEEVPNNVRRQITVV 767 Query: 446 GVKKLSDALSVFD 458 V+ + + L + Sbjct: 768 AVEHMDEVLPIAF 780 >UniRef50_P36774 ATP-dependent protease La 2 n=51 Tax=Bacteria RepID=LON2_MYXXA Length = 827 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 68/425 (16%), Positives = 132/425 (31%), Gaps = 67/425 (15%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + + G PG GK++L ++ L + G ++ Sbjct: 371 RGPILCLVGPPGVGKTSLGQSVAKATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFI 430 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD------------- 186 + + ML E + L V+D Q +D Sbjct: 431 QSMKKAGTKNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNNTFSDHYLDVPFDLSKVM 490 Query: 187 -------VQSSPGSVAQVRETAAYLTRFA---KTRGVAIVMVGHVTKDGSLA------GP 230 + PG + R LT + K I +V K+ L+ Sbjct: 491 FVATANQLDPIPG-PLRDRMEIIELTGYTFEEKQSIARIHLVPKQLKEHGLSPDHIDITD 549 Query: 231 KVLEHCIDCSVLLDGDADSRFRTLRS-----HKNRFGAVNELGVFAMTEQGLREVSNPSA 285 + L G + R + G + + ++E+ P Sbjct: 550 EALLTLTTAYTREAGVRNLERRIADICRAVAVEVAGGKTEKQ---TINADRVKEILGPEM 606 Query: 286 IFLS---RGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILL 342 + R + + + G L +E + M ++ ++++ A L Sbjct: 607 FYSEVAERTEVPGVATGLAWTAAGGDLLFIEATKMAGKGGMTLTGQLGDVMKESATAALS 666 Query: 343 AVLHR--HGGLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 + + G+ + D+ ++ G + SA + +L A+ S L + D + Sbjct: 667 YLRSKAEQLGISPNFLEKTDLHLHFPAGSIPKDGPSAGVTILTALTSLLTGIRVRHDTAM 726 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKL 450 GE L G + PV +E++ A + G +R I+P VP +A ++ V + Sbjct: 727 TGEATLRGLVLPVGGIKEKVLAAHRAGIKRVILPERCRKDLIDVPDQARNELEFIFVTHM 786 Query: 451 SDALS 455 D L Sbjct: 787 DDVLK 791 >UniRef50_D1N951 ATP-dependent protease La n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N951_9BACT Length = 805 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 138/426 (32%), Gaps = 66/426 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------ 144 + + G PG GK++L + + + + G ++ Sbjct: 377 ILCLVGPPGVGKTSLGQSIARAMNRNFVRVSLGGVRDEAEIRGHRRTYVGAMPGRIVQNL 436 Query: 145 --GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD---------------- 186 + + ML E + L V+D Q D Sbjct: 437 KKAGTANPVFMLDEIDKLANDFRGDPASALLEVLDPAQNYAFNDHYLEVDCDLSKVFFIA 496 Query: 187 ----VQSSPGSVAQVRETAAYL---TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC--I 237 + + PG + R L T F K +V K L +V H + Sbjct: 497 TANLLDTIPG-PLRDRMEIIRLPGYTSFEKREIARRYLVPRQLKASGLTAKQVRFHLSGV 555 Query: 238 DCSVLLDGDADSRFR--------TLRSHKNRF--GAVNELGVFAMTEQGLREVSNPSAIF 287 D + ++ R LR R G + ++T + ++E+ P Sbjct: 556 DELID-YYTREAGVRDLERTVGQVLRKIARRIVEGKIEAGAPVSVTPKLVQELLGPRKFL 614 Query: 288 LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAV--GLEQNRLAILLAVL 345 L + G + + W +++ I+ + + + Q +++ Sbjct: 615 LDEAENAGPGYATGMAWTSCGGVILPIEVIAIPGGKGALKLTGSLGKVMQESAETAFSLI 674 Query: 346 HRHGGL------QMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFG 398 H + D ++V G SA + L LA++S L R L L + G Sbjct: 675 RAHAAEWKIEPAYFNEHDFHIHVPDGATPKDGPSAGITLTLALISLLTGRSLIPRLSMTG 734 Query: 399 EVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSD 452 E+ L G + V +E++ A + G R+ I+P N +P++ + ++ V + + Sbjct: 735 EITLRGRVTAVGGIREKVIAALRAGIRQVILPEENRKDTLEIPEEVRKKLEFHFVSEFHE 794 Query: 453 ALSVFD 458 AL + Sbjct: 795 ALKIAF 800 >UniRef50_Q2NEP8 Putative ATP-dependent protease La n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEP8_METST Length = 825 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 69/423 (16%), Positives = 139/423 (32%), Gaps = 65/423 (15%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 GS +L G PG GK++L L + + + G ++ Sbjct: 380 QGSILLFVGPPGTGKTSLGKSIAAALERPYVRVSLGGVNDESEIRGHRRTYLGALPGRII 439 Query: 145 -GLP----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 G+ T+ + +L E L L V+D Q + P ++ V Sbjct: 440 NGMKKAGKTNPVFVLDEIDKMTESLNGNPTSALLEVLDPEQNDSFSDNYLEVPYDLSDVF 499 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGH-VTKDGSLAGPK 231 R L A + V++ H +T+D Sbjct: 500 FIGTANSLQDIPGPLRDRLEIIELDSYTNTEKHHIADEHLIKEVLLEHGLTEDDLKITYD 559 Query: 232 VLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSN-PSAIF 287 ++ I+ G + R + N + + E L ++ + + Sbjct: 560 AIDCLIEKYTRESGVRGLKREIAAIARYVTEKIVVDNVERPYVVDENMLYDILGHEKSHY 619 Query: 288 LSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL------- 338 D G + W G L +E L + ++ ++++ Sbjct: 620 DKVPDSNPPGVVTGLAWTPIGGDILFIEAVLLPGEEKLKLTGQLGDVMKESAQIAQSLIK 679 Query: 339 AILLAVLHRHGGLQMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 + L VL + +D+ ++V G + SA + LL + S + + P+ L + Sbjct: 680 SRLATVLK---DSDIEKRDIHIHVPAGSIPKDGPSAGVTLLTTIASLVTNTPVDSTLAMT 736 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLS 451 GE+ L G++ PV +E++ A + G + ++P N+ + + M +K + Sbjct: 737 GEISLRGKVLPVGGIKEKVIAAHRSGIKTVLLPEENMKDLDDVPCEVKDDMTFKPMKTVD 796 Query: 452 DAL 454 + L Sbjct: 797 EVL 799 >UniRef50_Q469F5 ATP-dependent protease La n=11 Tax=cellular organisms RepID=Q469F5_METBF Length = 802 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 139/426 (32%), Gaps = 59/426 (13%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH----------- 142 GS +L+ G PG GK++L L ++ + + G + ++ Sbjct: 355 QGSILLLIGPPGTGKTSLGKSIADALGRKYIRISLGGVKDEAEIRGHRRTYIGALPGRII 414 Query: 143 ---RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 R + + +L E + L V+D Q P ++ V Sbjct: 415 QGMRKAGTKNPVFILDEVDKLSASYSGDPASALLEVLDPEQNSTFSDHYLEIPYDLSDVL 474 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGH-VTKDGSLAGPK 231 R + AK V ++ H + + + Sbjct: 475 FIATANSMANIPWPLLDRMETIEISGYTKNEKLAIAKDHLVPCILEDHGLDAEKLKIEDE 534 Query: 232 VLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL 288 L+ ID G + +T R + + + + L+E+ I Sbjct: 535 ALKVIIDKYTREAGVRGLKKQLAKTARFVSEKIVSGKADLPYVVRADMLKEILGKEIIRQ 594 Query: 289 SR-GDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 E G + W G L +E + + ++ ++++ L V Sbjct: 595 EEARKENVPGVVTGLAWTPVGGDILFIEGTFMPGSGKLTLTGQLGDVMKESAKISLSLVR 654 Query: 346 HRHGG----LQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 R D+ ++V G SA + L A+ S + + + L + GE+ Sbjct: 655 SRLANTANSFDFTSSDIHIHVPSGATPKDGPSAGVTLFTALTSLIIGKAVDPKLAMTGEI 714 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L+G + PV +E++ A + G ++ I+P N VP+ A +Q V+ + + L Sbjct: 715 TLSGAVLPVGGIKEKVLAAHRAGIKKIILPKENERDLEDVPEDARNELQFVPVETIEEVL 774 Query: 455 SVFDDL 460 D+ Sbjct: 775 REALDI 780 >UniRef50_Q2SRX5 ATP-dependent protease La n=4 Tax=Mollicutes RepID=Q2SRX5_MYCCT Length = 779 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 141/426 (33%), Gaps = 61/426 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G I G PG GK++L L ++ + + G + ++ Sbjct: 351 KGPIITFVGPPGVGKTSLARSIAEALGKKFVKVSLGGVKDESEIRGHRKTYVGSMPGRII 410 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 + L +L E + L V+D Q P ++ V Sbjct: 411 QALKRAKVKNPLFLLDEIDKMASDNRGDPASAMLEVLDPEQNKEFSDHYIEEPYDLSTVM 470 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVG-HVTKDGSLAGPK 231 R L AK ++ +T+D + Sbjct: 471 FIATANYIENIPEALYDRMEIINLSSYTEIEKMHIAKDYLTKKILEEDQLTEDELKFTDE 530 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGA---VNELGVFAMTEQGLREVSNPSAI-F 287 + I G R L + +F E+ +T + + E Sbjct: 531 AYDEIIKYYTREAGVRQLE-RHLATIARKFIVKLLNGEISNLVVTREVVVEYLGKHIFEH 589 Query: 288 LSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 S+ +E G + + G L +E+ + ++ ++++ L V Sbjct: 590 TSKEEESQVGVVTGLAYTQFGGDILPIEVSTYAGKGNLTLTGKLGEVMKESASIALTYVK 649 Query: 346 HRHGGL-----QMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 H + D D+ ++V G V SA + L A++S+L +P+ +D + GE Sbjct: 650 ANHEKFGITKEKFDDIDIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGE 709 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + L G + P+ +E+ AA+ G + ++P+ N +P++ + ++I V K D Sbjct: 710 ITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEDIPQEVQDVLKITPVSKYEDV 769 Query: 454 LSVFDD 459 + + Sbjct: 770 YEIIFN 775 >UniRef50_B1C8C1 ATP-dependent protease La n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8C1_9FIRM Length = 770 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 68/427 (15%), Positives = 140/427 (32%), Gaps = 63/427 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G I + G PG GK+++ ++ L V G ++ Sbjct: 344 KGPIICLVGPPGVGKTSIAKAIAKASDRKFVRLSVGGTRDEAEITGHRRTYIGAMPGRII 403 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 L +L E + L V+D Q P +++V Sbjct: 404 TGIAQAKSNTPLFLLDEIDKIGSDFKGDPASALLEVLDPEQNSNFSDHYLEIPFDLSEVL 463 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGH-VTKDGSLAGPK 231 R + AK + M H +TK+ Sbjct: 464 FVATANNIATIPPALLDRMEVIEIPGYLPKEKVEIAKRHLIKKEMEEHGLTKENLSFTTA 523 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAV----NELGVFAMTEQGLREVSNPSAI- 286 L + L G + R A +E G +T + L E + Sbjct: 524 ALTKIVTDYTLESGVRQLERLIAKI--CRKCAKKIVADEEGKIEVTVKNLHEFLGKELLT 581 Query: 287 FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMM-----ANPRRVAVGLEQNRLAIL 341 F +G++ G + + ++I+A++ + V + L + Sbjct: 582 FDKQGNKKHVGKVTGLAYTSYGGDTLKIEAVITDGKGHIELTGSLGDVMQESAKTALTYV 641 Query: 342 LAVLHR-HGGLQMA-DQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFG 398 ++ + +D+ ++V G SA + L A++S+L +P+D+ + G Sbjct: 642 RTIVDKLKVDKDFYEKKDIHIHVPEGATPKDGPSAGITLATAIISALTKMSVPEDIAMTG 701 Query: 399 EVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV------PKKAPEGMQIFGVKKLSD 452 E+ L+G++ P+ +E++ A++ ++ ++P N+ P + ++I VK + D Sbjct: 702 EITLSGDVLPIGGLREKLLAASRARVKKVLIPKENIKDLEEVPDDIKDTLEIVPVKHMMD 761 Query: 453 ALSVFDD 459 + Sbjct: 762 VYKIIFK 768 >UniRef50_Q2YPX3 ATP-dependent protease La n=377 Tax=Bacteria RepID=LON_BRUA2 Length = 812 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 66/429 (15%), Positives = 137/429 (31%), Gaps = 74/429 (17%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-------- 144 + G + + G PG GK++L ++ + + G ++ Sbjct: 358 IKGPILCLVGPPGVGKTSLARSIAKATGREYVRMSLGGVRDEAEIRGHRRTYIGSMPGKV 417 Query: 145 ------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV 197 ++ L +L E + L V+D Q M ++ V Sbjct: 418 IQSMKKAKKSNPLFLLDEIDKMGQDFRGDPSSAMLEVLDPEQNATFMDHYLEVEYDLSNV 477 Query: 198 RETAAYLTRFAKTRGVAIVMVG--HVTKDGSLAGPKVLE----HC--------------- 236 A T + + ++ + + + LE H Sbjct: 478 -----MFVTTANTMNIPVPLLDRMEIIRIAGYTEDEKLEIAKRHLLPKAIKDHALQPKEF 532 Query: 237 -----IDCSVLLDGDADSRFRTLRSHKN---RFGAVN----ELGVFAMTEQGLREVSNPS 284 +V+ ++ R+L R + +T++ L + Sbjct: 533 SVTEDALRNVIRHYTREAGVRSLEREVMTLARKAVTEILKTKKKSVKITDKNLSDYLGVE 592 Query: 285 AI-FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-----LEQNRL 338 F E G + W L+ I+ ++ R G ++++ Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVGGELLTIEGVMMP---GKGRMTVTGNLRDVMKESIS 649 Query: 339 AILLAVLHRHGGLQ-----MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQ 392 A V R +D+ V+V G SA +A++ A+VS L P+ + Sbjct: 650 AAASYVRSRAIDFGIEPPLFDKRDIHVHVPEGATPKDGPSAGIAMVTAIVSVLTGIPVRK 709 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFG 446 D+ + GEV L G + P+ +E++ + G ++ ++P N +P ++I Sbjct: 710 DIAMTGEVTLRGRVLPIGGLKEKLLATLRGGIKKVLIPEENAKDLAEIPDNVKNNLEIVP 769 Query: 447 VKKLSDALS 455 V ++ + L Sbjct: 770 VSRVGEVLK 778 >UniRef50_Q8RHK0 ATP-dependent protease La n=11 Tax=cellular organisms RepID=Q8RHK0_FUSNN Length = 768 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 64/425 (15%), Positives = 137/425 (32%), Gaps = 61/425 (14%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR-------------- 140 G + + G PG GK++L+ + ++ + + G ++ Sbjct: 342 GVILCLSGPPGIGKTSLVKSIAESMGRKFVRVSLGGVRDEAEIRGHRRTYVGSMPGKIMK 401 Query: 141 AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV-- 197 A + + + +L E + L V+D Q P +++V Sbjct: 402 AMKEAGTNNPVMLLDEIDKMSNDFKGDPASAMLEVLDPEQNKNFEDHYIDMPFDLSKVFF 461 Query: 198 ----------------RETAAYLTRFA---KTRGVAIVMVGHVTKDGSLAG------PKV 232 R L+ + K ++ K+ LA KV Sbjct: 462 VATANDLRNVSAPLRDRMDILQLSSYTEFEKLHIAQKFLLKQAQKENGLANIDIKIPDKV 521 Query: 233 LEHCIDCSVLLDGDADSRFRTLRS-HKN-RFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 + ID G + + + K R + F + L + + + Sbjct: 522 MFKLIDEYTREAGVRNLKREIITICRKLAREVVEKDTKKFNLKPTDLEKYLGKAKFRPEK 581 Query: 291 GDEVTSGSSV--MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILL-----A 343 + T V + W + +++Q + +G A + A Sbjct: 582 SRKATGKIGVVNGLAWTAVGGVTLDVQGVDTPGKGEVTLTGTLGNVMKESASVAMTYVKA 641 Query: 344 VLHRHGGLQ---MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 L ++ D+ + ++ G SA + + A+VS L ++ + QD+ + GE Sbjct: 642 NLKKYPPKDKDFFKDRTIHLHFPEGATPKDGPSAGITITTAIVSVLTNKKVRQDIAMTGE 701 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + + G++ + +E++ A + G + I+P N +P + M+I K D Sbjct: 702 ITITGDVLAIGGVREKVIGAHRAGIKEVILPEDNRVDTDEIPDELKSTMKIHFAKTYDDV 761 Query: 454 LSVFD 458 + Sbjct: 762 SKLVF 766 >UniRef50_C4FZN4 ATP-dependent protease La n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZN4_ABIDE Length = 801 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 73/431 (16%), Positives = 144/431 (33%), Gaps = 87/431 (20%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQ-----------------QMKTLYVTGEESLQQV 137 GS IL G PG GK+++ L + + Y+ ++ Sbjct: 338 GSIILFTGAPGTGKTSMGKAIAEALGRKYIRISLGGIKDEAEVRGHRRTYIGAM--PGRI 395 Query: 138 AMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQ 196 R G+ + + + + E L V+D Q + D + P +++ Sbjct: 396 MESIKRSGVNNPVIVLDEIDKLGYGSFNGDPESALLEVLDPEQNVTFTDHYMNVPYDLSK 455 Query: 197 V------------------RETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH--- 235 V R L+ + H+ K+ +A K LE Sbjct: 456 VLFICTANNIDEMSDPLLDRMEIIELSGYTAEEKF------HIAKEHLMA--KSLEEAGL 507 Query: 236 ------CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVS-------- 281 D + + +R K + + + E+ + +V Sbjct: 508 LKKNIGISDAVLKNIIANYTMEAGVRGLKKQIDKLMRQAAVKILEKEIEKVVIKKEDLPK 567 Query: 282 ---NPSAIFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGL--E 334 N A+ G + W G L +E AL + V G + Sbjct: 568 LLGNKKALHDKVLKHNIPGVVTGLAWTQAGGEILFIETTAL-----SGTGQIVITGQLGD 622 Query: 335 QNRLAILLAV-LHRHG----GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDR 388 + + +AV L + + D+D+ ++V G V SA + + A+ S + Sbjct: 623 VMKESATIAVNLAKSLLFDKKIDFRDKDIHIHVPSGSVPKDGPSAGITMFTAITSLVLGI 682 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGM 442 + +L + GE+ L G++ P+ E++ A + G ++ ++P N VP+ + + Sbjct: 683 KVNPELAMTGEISLRGQVLPIGGLPEKLMAAERAGIKKVLIPLTNKEDLIDVPESTKKSL 742 Query: 443 QIFGVKKLSDA 453 +I V ++D Sbjct: 743 EIVLVDTVTDV 753 >UniRef50_A3ESL4 ATP-dependent protease La n=2 Tax=Leptospirillum sp. Group II RepID=A3ESL4_9BACT Length = 813 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 69/429 (16%), Positives = 141/429 (32%), Gaps = 62/429 (14%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH-------- 142 GV G + + G PG GK+TL + ++ + + G ++ Sbjct: 356 GVYQGPVLCLIGPPGVGKTTLGQSIARAMGREFVRVSLGGVRDEAEIRGHRRTYVGAMPG 415 Query: 143 ------RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVA 195 R + + ML E + L V+D Q P ++ Sbjct: 416 RIIQGMRKAGTRNPVFMLDEIDKVGGDYRGDPASALLEVLDRAQNKDFRDHYLDLPFDLS 475 Query: 196 QVRETAAY---------------LTRFA------KTRGVAIVMVGHVTKDGSLAGPK--- 231 +V L R A K ++ K+ L + Sbjct: 476 KVFFITTANVFQTIPPPLLDRMDLIRLAGYTWEEKRHIARSYLIPRTMKEIRLEEGEFDL 535 Query: 232 VLEHCIDCSVLLDGDADSR--FRTL-----RSHKNRFGAVNELGVFAMTEQGLREVSNPS 284 E + +A R R + + + R + + +T + L + Sbjct: 536 TDEALVRLIRSFTREAGVRSLERKISTILRKVLRARTEQKRKRRIV-VTAESLEKYLGNE 594 Query: 285 AIFLSRG-DEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL 341 + + E G + W G L +E ++ ++ ++++ A L Sbjct: 595 YVEPPKRLSEAAPGVVTGLAWTPNGGDVLFIESVSIPGQKGFILTGQLGDVMKESARASL 654 Query: 342 LAVLHR--HGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLV 395 V R GL + ++ ++V G + SA + + A+ S + P+P + Sbjct: 655 SFVQSRSEKLGLSKEYFSKHEIHIHVPSGAIPKDGPSAGITMASAIASLVTGIPVPATIA 714 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKK 449 + GE+ L+G + PV +E++ A + G + +P N +P++ + + I V Sbjct: 715 MTGEIALSGRVLPVGGIKEKLIGAREAGIQEVFIPVDNEKDLEEIPEEVRKDLTIHVVHH 774 Query: 450 LSDALSVFD 458 + + L Sbjct: 775 MDELLDRLF 783 >UniRef50_C0R248 ATP-dependent protease La n=3 Tax=Brachyspira RepID=C0R248_BRAHW Length = 841 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 136/432 (31%), Gaps = 65/432 (15%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPT 148 S + G PG GK+++ L + + G ++ G Sbjct: 387 KSSILCFVGPPGVGKTSIGKSIAEALDRPFFRFSLGGMRDEAEIKGHRRTYIGAMPGKII 446 Query: 149 DNLNM---------LSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV- 197 + L + L E + L V+D Q P ++ V Sbjct: 447 EALKIVKVKNPVLMLDEIDKLGTSFQGDPSSALLEVLDPEQNASFRDHYLDLPFDLSNVL 506 Query: 198 -----------------RETAAYLTRFA--KTRGVAI--VMVGHVTKDGSLA-----GPK 231 R L+ + + +A ++ V G K Sbjct: 507 FITTANTLDTIPRPLLDRMEVIRLSGYIMEEKLKIASKYIIPRQVKAHGLDIKNINFTNK 566 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRS-HKNRFG---AVNELGVFAMTEQGLRE-VSNPSAI 286 + ID G + R R K + + + E+ L + + P Sbjct: 567 AISAIIDGYAREAGVRNFERRIERICRKIAADIVEHNKKTYSYIVDEKDLEKYLKKPIFT 626 Query: 287 FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 ++ G+S+ + W + I+++ + G + ++ + + + Sbjct: 627 EDFTEKDLKPGNSIGLAWTSLGGATLTIESIKVSEKKDSGNIQVTGQLGDVMSESVEIAY 686 Query: 347 RHG-------GLQ---MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLV 395 + G+ D + +++ G SA + + A++S ++ + D Sbjct: 687 SYVKSVAKDYGVPENYFNDAMIHLHIPEGATPKDGPSAGITMATALLSLSMNKVIRNDTA 746 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGF-RRAIVPAAN------VPKKAPEGMQIFGVK 448 + GE+ L G++ P+ +E+ A + GF + I+P N +P+ +G+ VK Sbjct: 747 MTGELSLNGKVLPIGGLKEKTIAAKRLGFIKHIIIPHENIRDLDEIPENVKKGLTFHPVK 806 Query: 449 KLSDALSVFDDL 460 + + L Sbjct: 807 DVKEVFDFMFKL 818 >UniRef50_B9L019 ATP-dependent protease La n=8 Tax=Bacteria RepID=B9L019_THERP Length = 832 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 76/421 (18%), Positives = 135/421 (32%), Gaps = 64/421 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR--------------AH 142 + G PG GK++L L + + + G ++ A Sbjct: 382 ILCFVGPPGVGKTSLAQSIARALGRAFTRMSLGGVRDEAEIRGHRRTYIGAMPGRIIQAI 441 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV---- 197 R D + +L E + L V+D Q P +++V Sbjct: 442 RRAGTNDPVFVLDEIDKVGTDWRGDPASALLEVLDPEQNSTFRDHYLDVPFDLSKVMFIA 501 Query: 198 --------------RETAAYL--------TRFAKTRGVAIVMVGHV--TKDGSLAGPKVL 233 R L + A+ + H +D + +L Sbjct: 502 TANVLDTIPPALRDRMEILVLSGYTDEEKLQIARRYLIPKQFRRHALNPEDFVFSDEAIL 561 Query: 234 EHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 E I G + R R E+ +T + E Sbjct: 562 E-IIQHYTREAGVRNLEREIAAIARKLATRLAEGQEIPR-EITVDVVHEFLGKRRYHYEE 619 Query: 291 GDEVT----SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 E T V V G + +E + + ++ + ++ A L V Sbjct: 620 LSERTSQPGVAIGVGVTPVGGDIMFIEATRMPGRGNLIITGQLGEVMRESAQAALSIVRS 679 Query: 347 R--HGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 R G++ M D D+ ++V G + SA + L+ A+VS L P+ +D+ + GE+ Sbjct: 680 RAEQFGIEPDFMKDSDIHIHVPSGAIPKDGPSAGVTLVTALVSLLTGIPVREDVAMTGEI 739 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G++ PV +E+ A + G + I+P N +P E M+ V+ + D L Sbjct: 740 TLRGQVLPVGGIKEKALAAQRAGIKVFILPKRNEMDLDELPPTLRENMRFVLVETIDDVL 799 Query: 455 S 455 Sbjct: 800 R 800 >UniRef50_C5NYU5 ATP-dependent protease La n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYU5_9BACL Length = 765 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 66/424 (15%), Positives = 140/424 (33%), Gaps = 64/424 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHR-LGL--------- 146 + + G PG GKS+L + + + + G ++ LG Sbjct: 344 ILCLSGPPGVGKSSLAKSIAASMGRSFVRISLGGVHDEAEIRGHRRTYLGALPGKIIQSL 403 Query: 147 ----PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV---- 197 + + +L E + + L VID Q + P +++V Sbjct: 404 KKIKTKNPVILLDEIDKMASDIKGDPAAAMLEVIDPAQNNEFVDHYLDIPFDLSKVLFIA 463 Query: 198 --------------RETAAYLTRFA---KTRGVAIVMVGHVTKD-GSLAGPKVLEHCIDC 239 R L + K A ++ TK+ G G Sbjct: 464 TANNLSLIPAPLRDRMEVIELESYTIKEKENIAAKYLIPRQTKENGLKKGQITFSKQAIN 523 Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAM--TEQGLREVSNPSAIFLSRGDEVTSG 297 ++ ++ R L FGA+ + E+ ++ N F Sbjct: 524 KIINGYTYEAGVRNLERV---FGAICRKAALKVLQGEEKIKVGVNNLEDFAGPEKYSAKD 580 Query: 298 SSVMVVW---EGTRPLLVEIQALVDHSMM--ANPRRVAVG----LEQNRLAILLAVLHRH 348 +V G +V L + + + + G + + + ++ L + Sbjct: 581 KNVKPEIGLVNGLAYTVVGGDTLEIETSISKGTGKIILTGKLGDVMKESAQMAISFLRSN 640 Query: 349 G------GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 G+ ++ D+ ++V G V SA + + ++ S+L +P+ ++ + GE+ Sbjct: 641 AEKLGIEGVNFSEIDIHLHVPEGAVPKDGPSAGITITTSVYSALTKKPVDNNIAMTGEMT 700 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 L G++ P+ +E+I + K I+P N +P++ E + I V + + Sbjct: 701 LHGKVLPIGGVKEKILSSEKMNINTIIIPTKNKKDLIDIPEEVLEKLTIHTVDNIQEVFK 760 Query: 456 VFDD 459 + Sbjct: 761 IVFG 764 >UniRef50_Q65GJ6 ATP-dependent protease La n=16 Tax=Bacteria RepID=Q65GJ6_BACLD Length = 774 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 67/422 (15%), Positives = 140/422 (33%), Gaps = 61/422 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + + G PG GK++L L ++ + + G ++ Sbjct: 346 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRII 405 Query: 145 -GLP----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 G+ + + +L E + L V+D Q +++V Sbjct: 406 QGMKKAGKNNPVFLLDEIDKMASDFRGDPASAMLEVLDPEQNHTFSDHYIEETFDLSKVL 465 Query: 198 -RETAAYLTRF---AKTRGVAIVMVGHVTKDG-SLAGPKVL-----EHC----------- 236 TA L + R I + G+ + + +L EH Sbjct: 466 FIATANNLATIPGPLRDRMEIITIAGYTEVEKVEIVKDHLLPKQLKEHGLKKSNLQIREQ 525 Query: 237 -IDCSVLLDGDADSRFRTLRSH-------KNRFGAVNELGVFAMTEQGLREVSNPSAIFL 288 + + ++ R L + E +T++ L + Sbjct: 526 AVLDVIR-YYTREAGVRNLERQIAAICRKAAKLIVSGERKRITVTDKNLEDYLGKRMFRY 584 Query: 289 SRGD-EVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 + + + G + + G L +E+ + ++ + ++ A V Sbjct: 585 GQAELDDQIGVVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVR 644 Query: 346 HRHGGLQMA-----DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 + L ++ D+ ++V G V SA + + A+VS+L RP+ +++ + GE Sbjct: 645 SKAEELNISPDFHEKHDIHIHVPEGAVPKDGPSAGITMATALVSALTGRPVSRNVGMTGE 704 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + L G + P+ +E+ A + G + I+P N +P EG+ V L + Sbjct: 705 ITLRGRVLPIGGLKEKALGAHRAGLKTVIMPKDNEKDIEDIPNSVREGLTFIPVAHLDEV 764 Query: 454 LS 455 L Sbjct: 765 LK 766 >UniRef50_C0DC21 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DC21_9CLOT Length = 172 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 114/170 (67%), Gaps = 1/170 (0%) Query: 34 ITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVV 93 + E +SP A + +G A K LS+I L+E R STGFKE DRVLG G+V Sbjct: 2 VEEPIAKSSPSGAASSLGAGRRSLAPAVKPALLSEIDLQEQDRISTGFKELDRVLGDGIV 61 Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLN 152 GS +L+GG+PG GKSTLLLQ LA + + LY++GEESL+Q+ MRA+R+G +L Sbjct: 62 NGSLVLVGGDPGIGKSTLLLQVCRHLAGAEHRVLYISGEESLKQIKMRANRIGQVQGDLR 121 Query: 153 MLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAA 202 L ET++++I E E+P+++VIDSIQ M+ +V S+PGSV+QVRE+ + Sbjct: 122 FLCETNLDRIDRTIEAEKPEIVVIDSIQTMYREEVSSAPGSVSQVRESTS 171 >UniRef50_A0BE69 Lon protease homolog n=3 Tax=Paramecium tetraurelia RepID=A0BE69_PARTE Length = 791 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 142/489 (29%), Gaps = 76/489 (15%) Query: 31 WNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGG 90 WN E L+ + + ++ + + R Sbjct: 299 WNQQVEESLSIEKCK-ETLDADHFGLTKVKERILQFLAVKKLRKERKVADSNG------- 350 Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----G 145 GS I G PG GK++L L + + + G Q+ G Sbjct: 351 ---QGSIICFFGPPGVGKTSLGQSIAKSLNRPFYRIALGGVSDEAQIRGHRRTYVGAFPG 407 Query: 146 LPTDNL---------NMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVA 195 + +L E + L V+D Q M + + ++ Sbjct: 408 SFIQAIKKVKCKNPVILLDEIDKLTSNHRGDPSSALLEVLDPEQNSHFMDNYLNIEFDLS 467 Query: 196 QV------------------RETAAYLTRFAKTRGVAI--------------VMVGHVTK 223 V R + + AI ++ VT Sbjct: 468 SVLFIATANQLETIQPALRDRLELIEIVGYTVKEKAAIANSYLIPKQLQKNGLVNEQVTI 527 Query: 224 DGSLAGPKVLEHCID-CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSN 282 + + +H + L+ +R + + K N + + ++ L E+ Sbjct: 528 PQEIIHKIIKQHTSEAGVRQLERVIAKIYRNI-ALKYVTDQQNFKTIV-VDQESLIEILG 585 Query: 283 PSAIFLSRGDE--VTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAV----GLE 334 PS G + W G + L++E + G Sbjct: 586 PSIHSDKHTTPLISIPGVCKGLAWTPAGGKVLMIESVKMEGKGKFEITGMKVQEQQFGWI 645 Query: 335 QNRLAILLAVLHRHGGLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQD 393 + + + + + D+ ++ G SA +A+ A+VS L + D Sbjct: 646 KAYWPQIKILSKSNTNINFDALDIHIHFPAGATPKDGPSAGVAITTAIVSLLTGLKVKSD 705 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGV 447 + + GE+ L G + PV +E+I A + G I+P N V + E M I V Sbjct: 706 IAMTGEITLTGRVLPVGGIKEKILGAFESGIFSVIIPHRNKANLVDVEPEIREKMSIHLV 765 Query: 448 KKLSDALSV 456 K + L + Sbjct: 766 KTIDQVLQI 774 >UniRef50_B8GX12 ATP-dependent protease La n=79 Tax=cellular organisms RepID=LON_CAUCN Length = 799 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 139/431 (32%), Gaps = 80/431 (18%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + + G PG GK++L ++ + + G ++ Sbjct: 344 KGPILCLVGPPGVGKTSLGKSIAKATGREFVRMSLGGVRDEAEIRGHRRTYIGSMPGKVV 403 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 T+ +L E + L V+D Q ++QV Sbjct: 404 QSMKKAKTTNAFVLLDEIDKMGSDYRGDPASALLEVLDPSQNSTFGDHYLEVDYDLSQVM 463 Query: 198 ----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPKVL 233 R + AK + + H G K Sbjct: 464 FVTTANSLNMPQPLLDRMEIIRIPGYTEDEKLEIAKRHILPKLAKDH--------GLKPA 515 Query: 234 EHCI-DCSVL---LDGDADSRFRTLR------SHKN-RFGAVNELGVFAMTEQGLREVSN 282 E + D ++ ++ R+L + K R A ++ + ++ L + + Sbjct: 516 EFIVPDKAIRDLIRYYTREAGVRSLERELGALARKTVRDLAREKVASITIDDERLAKYAG 575 Query: 283 PSAIFLSRGDE-VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL 341 DE G + W ++ I+A+ R G ++ + Sbjct: 576 VKKYRYGETDEVDQVGIVTGLAWTEFGGDILTIEAVKMP---GKGRMQITGNLKDVMKES 632 Query: 342 LAVLHRHGGLQ----------MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPL 390 +A + + + DV ++V G SA +A+ LAMVS L P+ Sbjct: 633 IAAANSYVRSRALQFGIKPPVFEKTDVHIHVPDGATPKDGPSAGIAMALAMVSVLTGIPI 692 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQI 444 +D+ + GE+ L G + + +E++ A + G + ++P N VP+ +G++I Sbjct: 693 RKDIAMTGEITLRGRVTAIGGLKEKLLAALRSGVKTVLIPQENEKDLADVPQTVKDGLEI 752 Query: 445 FGVKKLSDALS 455 V + + L Sbjct: 753 IPVSTVDEVLK 763 >UniRef50_Q4A9G0 Heat shock ATP-dependent protease n=7 Tax=Bacteria RepID=Q4A9G0_MYCHJ Length = 870 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 60/430 (13%), Positives = 134/430 (31%), Gaps = 75/430 (17%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------ 144 + + G PG GK+++ + + ++ + + G ++ Sbjct: 449 ILTLVGPPGTGKTSIAMAVAEAIGKEFVKISLGGIRDEAEIRGHRRTYVGALPGKIIQAL 508 Query: 145 ---GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV--- 197 G+ ++ L +L E + L V+D Q ++QV Sbjct: 509 KKVGV-SNPLILLDEIDKMGADFKGDPSAAMLEVLDPEQNRFFQDHYLELEYDLSQVLFV 567 Query: 198 ---------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSL------A 228 R L + AK+ + V+ K+ +L Sbjct: 568 ATANEIYDIPEPLLDRVEIIELSSYTFIEKIQIAKSHLIPAVL-----KENALDPKYFPI 622 Query: 229 GPKVLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 + ++ I G + + +R + F + + +RE+ Sbjct: 623 QDQTIDFLIRHYTREAGVRGLKRVIDKIVRKIIVKLLEKTLDQNFVIDIEFVRELLGIEK 682 Query: 286 IFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG----LEQNRLAIL 341 + +S V G PL + ++ G + Q I Sbjct: 683 Y--DPDNVDSSPQIGTVTGLGYSPLGGSTLQIEVSTIPGRGDIKLTGSLKDVMQESARIA 740 Query: 342 LAVLHRHG-----GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLV 395 L+ + + + ++V G + SA + A++S+L +P+ ++ Sbjct: 741 LSYVQSKAKDFGINFDFENTLIHIHVPEGAIPKDGPSAGITFATAIISALSQKPVSHNIA 800 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKK 449 + GE+ L G++ + +E+ A K+G + +P AN +P++ + +Q V Sbjct: 801 MTGEITLRGKVLAIGGLKEKTMGAYKNGIKIIFIPKANEKNLVDIPQEVKDVIQFIPVDT 860 Query: 450 LSDALSVFDD 459 Sbjct: 861 YQQIYDFIFK 870 >UniRef50_D1B1C1 ATP-dependent protease La n=7 Tax=Epsilonproteobacteria RepID=D1B1C1_SULD5 Length = 807 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/445 (16%), Positives = 153/445 (34%), Gaps = 83/445 (18%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPTD 149 G+ + G PG GK++L L +++ + + G E + ++ G Sbjct: 359 GAILCFAGPPGVGKTSLANSIAKALKRKLVRIALGGLEDVNELRGHRRTYIGAMPGRIVQ 418 Query: 150 NLNMLSETS----IEQICLIAEEEQPK-----LMVIDSIQVMHM---------------- 184 + E + +++I +A + L V+D Q Sbjct: 419 GIIEAGEMNPVVVLDEIDKVARSFRGDPTAVLLEVLDPEQNNKFRDYYLNFNIDLSKVIF 478 Query: 185 ----ADVQSSPGSVAQVRETA-------AYLTRFAKTRGVAIVMVGHVTKDGSLAGPK-V 232 +V S P + E AK + + H K+ +A K Sbjct: 479 IATANEVGSIPAPLRDRMEFIFVNSYTPQEKYEIAKKYLIPQELKKHGLKNSEVAISKPT 538 Query: 233 LEHCIDCSVLLDGDADSRFRT---LRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLS 289 L+ I G + R R LR + L ++ L+E + + Sbjct: 539 LQLIISNYTRESGVRNLRRRIADILRKVAKQLLINPTLEKVNISNANLKEYLPKTVFEID 598 Query: 290 RGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVLH- 346 D E + G + W +++++A+ ++G + + I L+V+ Sbjct: 599 EVDKENSVGIVNGLAWTSVGGDVLKVEAIRIQGKGGIQITGSLGDVMKESAKIALSVVKV 658 Query: 347 ----RHGGLQMA-----------------------DQDVFVNVVGGV-KVTETSADLALL 378 + + ++ D+ ++V G SA + + Sbjct: 659 LIDNKKIDVPLSIVPTSGLDKEECSKPIEASDVYRRYDLHIHVPEGATPKDGPSAGITMA 718 Query: 379 LAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN----- 433 A+ S L D+ + D+ + GE+ L+G++ P+ +E++ A K + A++P N Sbjct: 719 TAIASILCDKKVKSDVAMTGELTLSGKVLPIGGLKEKLIAAYKAKIKTALIPKKNYEKDL 778 Query: 434 --VPKKAPEGMQIFGVKKLSDALSV 456 +P++ E M I V ++ + L Sbjct: 779 DEIPEEVKEKMAIIPVSRIEEVLEF 803 >UniRef50_B2KCC0 ATP-dependent protease La n=2 Tax=Bacteria RepID=B2KCC0_ELUMP Length = 830 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 66/426 (15%), Positives = 135/426 (31%), Gaps = 64/426 (15%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + G PG GK++L + ++ + + G ++ Sbjct: 359 KGPILCFAGPPGVGKTSLAKSIASAVGRKFVRMSLGGVRDESEIRGHRRTYIGSMPGRII 418 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 + + +L E + L ++D Q P V++V Sbjct: 419 QGISKAKSNNPVFLLDEIDKMGSDWRGDPAAALLELLDPEQNKDFSDHYLDVPFDVSKVM 478 Query: 198 -----------------RETAAYLTRF--------AKTRGVAIVMVGHVTKDGSLA-GPK 231 R + + A+ + M H K+GSL G Sbjct: 479 FITTANSLSSIPVTLRDRLEIIDFSGYTEYEKEAIAQNHLIPRQMKEHGLKEGSLEIGLP 538 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRS----HKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 ++ + V G + K N +T+ L + Sbjct: 539 AVKLIMRDYVREAGVRNFEREISTICRKAAKM--YVENCGKTVTVTKDNLHDFLGVPRYT 596 Query: 288 LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL--EQNRLAILLAVL 345 +E G S + W + I+A R + G + + ++ A+ Sbjct: 597 NFTTEENGVGISTGLAWTSVGGETLSIEA--SEISDGKGRIMLTGKLGDVMKESVHAALT 654 Query: 346 HRHG-----GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 + G+ D ++ G V SA A+ A++S L P+ ++L + GE Sbjct: 655 YARSKGYGKGIDFNKTDFHIHFPEGAVPKDGPSAGTAVTTALISLLTKNPVKKNLAMTGE 714 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 V + G + P+ +E+ A + G + + P N VP+ + +++ VK + + Sbjct: 715 VTITGRVLPIGGVKEKFMAAYREGVKTILYPHTNEKDVSEVPEVIRKQLKLIPVKHMDEI 774 Query: 454 LSVFDD 459 + + + Sbjct: 775 VKIAFE 780 >UniRef50_B8DJE4 ATP-dependent protease La n=60 Tax=Bacteria RepID=B8DJE4_DESVM Length = 898 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/432 (17%), Positives = 145/432 (33%), Gaps = 75/432 (17%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPT----- 148 G + G PG GK++L + ++ + + + G ++ Sbjct: 471 KGPILCFAGPPGVGKTSLGRSIARAMGRKFQRISLGGMRDEAEIRGHRRTYIGAMPGRIV 530 Query: 149 ---------DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH---------------- 183 + + ML E + L V+D Q Sbjct: 531 QSLKQLGTRNPVLMLDEIDKIGSDFRGDPSSALLEVLDPEQNFSFSDHYLNVPFDLSKVM 590 Query: 184 -----------------MADVQSSPGSVAQVRETAAY---LTRFAKTRGVAI--VMVGHV 221 +V S PG Q + A L R A+ G++ V V Sbjct: 591 FICTANQLDTIPPPLRDRMEVISIPGYTMQEKLAIARRYLLPRQARENGLSPREVTVPDA 650 Query: 222 TKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVS 281 + + G L+ + S R + K A E G F +T + L ++ Sbjct: 651 LIERIITGYTREA----GLRNLEREIGSLCRKVARRK----AEGEKGPFRVTPRMLEKLL 702 Query: 282 NPSAIFLSRGD-EVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRL 338 + E+ G ++ + W G L VE+ + + ++ ++++ Sbjct: 703 GAPRFIDEEKEAELLPGVALGLAWTPYGGEVLHVEVTPMKGKGGVTMTGQLGDVMKESAQ 762 Query: 339 AILLAVLHR--HGGL--QMADQ-DVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQ 392 A + R G+ +++ D+ ++V G SA + ++ A++S++ + + Sbjct: 763 AAISYARSRAEQLGIEPDFSEKLDLHIHVPAGATPKDGPSAGVTMVTALLSAITGKSVRS 822 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFG 446 DL + GE+ L G + PV +E+I G + I+P NV +Q+ Sbjct: 823 DLCMTGEITLRGRVLPVGGIKEKILAGVARGMQHVIIPRQNVKDLEDIPADLLRRIQVHP 882 Query: 447 VKKLSDALSVFD 458 V + D L + Sbjct: 883 VAHIDDLLPLAF 894 >UniRef50_Q3A334 ATP-dependent protease La n=5 Tax=Bacteria RepID=Q3A334_PELCD Length = 796 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 67/424 (15%), Positives = 141/424 (33%), Gaps = 65/424 (15%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH----------- 142 G + G PG GK++L L ++ + + G + ++ Sbjct: 348 KGPILCFVGPPGVGKTSLGRSIARSLGRKFIRISLGGMKDEAEIRGHRRTYIGAMPGRII 407 Query: 143 ----RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQV 197 R G + + ML E + L V+D Q D P ++ V Sbjct: 408 QEICRAGAN-NPVFMLDEVDKIGQDFRGDPAAALLEVLDPEQNYSFTDHYLDVPFDLSHV 466 Query: 198 ------------------RETAAYLTRFAKTRGVAI----VMVGHVTKDGSLAGPKVLEH 235 R L ++ + I ++ V+++G P E Sbjct: 467 MFITTANVMDTVPPPLRDRMEVLRLPGYSDEEKLQIAFKYLIPKQVSENGLDKHPLQFEE 526 Query: 236 CIDCSVLLDGDADSRFRTL---------RSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 ++ + ++ R++ + K A + + + ++ P Sbjct: 527 QAVLKIIKNYTREAGVRSIDRQIASVCRKVAK--AVAQGKDAPEVIRSDQVEKMLGPRKY 584 Query: 287 FLS-RGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 F +E G + W G + VE+ + + + ++++ L Sbjct: 585 FSDVAAEEDRVGVVTGLAWTESGGDIIFVEVSTMAGRKDLTLTGSLGNVMQESAKTALSY 644 Query: 344 VLHRHGGLQ-----MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 V H + D+ ++V G + SA + + A++S L RP +++ + Sbjct: 645 VRAHHADFGIDAQVFENLDIHLHVPSGAIPKDGPSAGVTIATALISQLTRRPARRNVAMT 704 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GE+ L G I P+ +E++ A + G ++P N + M + V LS Sbjct: 705 GELTLTGRILPIGGVKEKVLAARRAGVTTVLLPERNRENLKELDDHILAEMTVLLVDNLS 764 Query: 452 DALS 455 + ++ Sbjct: 765 EVVA 768 >UniRef50_B0VJ87 ATP-dependent protease La n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ87_9BACT Length = 786 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 65/426 (15%), Positives = 147/426 (34%), Gaps = 59/426 (13%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------ 144 G + G + G PG GK+++ L+++ + + G ++ Sbjct: 343 GNLKGPILCFVGPPGTGKTSIGKSVARALSRKFIRMSLGGIHDEAEIRGHRRTYIGAMPG 402 Query: 145 --------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVA 195 + + ML E + L V+D Q + + + P ++ Sbjct: 403 KIIMEIKRQGTANPVFMLDEIDKVGRDFRGDPSSALLEVLDPEQNNSFVDNYINLPFDLS 462 Query: 196 QV------------------RETAAYLTRFAKTRGVAI---VMVGHVTKDGSLAGPKV-- 232 +V R T + + + I ++ ++ LA K+ Sbjct: 463 EVLFITTANTLDTVPPALRDRMEIIEFTSYLENDKIEIAKHFLIPREKENNGLAKEKITF 522 Query: 233 ----LEHCIDCSVLLDGDADSRFRTLRSHK--NRFGAVNELGVFAMTEQGLREVSNPSAI 286 L+ I V G + + R + + A+ + + + + + P + Sbjct: 523 TKAALQEIIRYYVREAGVRNLQRRIGSISRKIAKEVAMGTHQKWIIKAEDIAKYLGPRKL 582 Query: 287 FLSRGDEVT-SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAV 344 L + G + + W G ++ + L +G + + I ++ Sbjct: 583 TLEMANRKPEIGVATGLAWTGYGGEILFCETLRMPGKGNIILTGLLGEVMKESARIAVSY 642 Query: 345 LHRHGGLQ------MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 L + + D+ ++ G V SA L L +A+ S + + D+ + Sbjct: 643 LKANHSVFIIPPKLFETSDIHIHFPSGAVPKDGPSAGLTLTVALASLFTGQKVRHDIAMT 702 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANV------PKKAPEGMQIFGVKKLS 451 GE+ L G++ + +E++ A + G +R ++P N P GM+I V+++ Sbjct: 703 GEITLEGKVLAIGGLKEKLLAAKRAGIKRVVIPEENRETLSDFPADILAGMEITYVQEIQ 762 Query: 452 DALSVF 457 +A+ + Sbjct: 763 EAIRIL 768 >UniRef50_A9B5N1 ATP-dependent protease La n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5N1_HERA2 Length = 815 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 139/423 (32%), Gaps = 61/423 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------- 140 G+ + G PG GK++L + ++ L + G ++ Sbjct: 362 RGAILCFVGPPGVGKTSLGRSIAKAMNREFVRLSLGGVHDEAEIRGHRRTYIGAMPGSLI 421 Query: 141 --AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV 197 R G+ + + +L E + L V+D Q ++ V Sbjct: 422 QAIRRSGVN-NPVVLLDEIDKLSSDHRGDPTSAMLEVLDPAQNTNFRDHYLDVAWDLSPV 480 Query: 198 ------------------RETAAYLTRFA--KTRGVAI-VMVGHVTKDGSLAGPKVL-EH 235 R L + + +A +V + SLA +V +H Sbjct: 481 MFIATANTLQTIPAPLRDRLEIIQLGSYTMREKYEIASRYLVPEQREQHSLAPNEVEIDH 540 Query: 236 CIDCSVLLDGDADSRFRTLR------SHKN-RFGAVNELGVFAMTEQGLREVSNPSAIFL 288 + + ++ R L K R A+ + RE F Sbjct: 541 EALLVAIEEYTREAGVRNLEQQIGTLMRKAARQVALGSATPIVLDPAKTREYLGKRRYFS 600 Query: 289 SRGD-EVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 + G +VW G + +E + A ++ ++++ A L V Sbjct: 601 EIHERTDRPGIVTGLVWTPVGGDIIFIEATKMTGRGNFALSGQLGDVMKESARAALSWVR 660 Query: 346 HRHGGLQMA-----DQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 + D+ V+V G SA +A+ A+VS L R L D+ + GE Sbjct: 661 AEGEAYGIDPNFAQHYDLHVHVPAGAQPKDGPSAGIAMATALVSLLTGRVLRDDVAMTGE 720 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + L G++ P+ +E++ A + G R I+P N +P +Q GV+ + Sbjct: 721 ITLRGKVLPIGGVREKVLAAHRAGIRTIILPQRNLADLDEIPADVLAEVQFHGVEHVGQV 780 Query: 454 LSV 456 + + Sbjct: 781 IEL 783 >UniRef50_D1C5L6 ATP-dependent protease La n=2 Tax=Bacteria RepID=D1C5L6_SPHTD Length = 815 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 67/427 (15%), Positives = 140/427 (32%), Gaps = 60/427 (14%) Query: 89 GGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR-------- 140 G G + + + G PG GK++L + +++ + + G ++ Sbjct: 345 GRGAIGAQILCLVGPPGVGKTSLGRSIATAMGRKLVRVSLGGVRDEAEIRGHRRTYIGAF 404 Query: 141 ------AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGS 193 A + + + +L E + L V+D Q P Sbjct: 405 PGRIIGAMKTAGTINPVIVLDEIDKMASDYRGDPAAAMLEVLDPEQNHAFNDHYLDVPYD 464 Query: 194 VAQV-----RETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL------EH------- 235 +++V + + + + R I + G+ + G + L H Sbjct: 465 LSKVMFIATANSLYAIPKPLRDRMEIIEISGYTEHEKIEIGRRHLLPKQLDAHGLAPDQI 524 Query: 236 ---------CIDCSVLLDGDADSRFRTL---RSHKNRFGAVNELGVFAMTEQGLREVSNP 283 I G + + R +T L + P Sbjct: 525 EIPQKVWMRIIRGYTREAGVRNLERQIASICRKVARDVVVKGRTKRVRLTLARLEDYLGP 584 Query: 284 SAI-FLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAI 340 F + E G ++ + G + VE+ + + R ++++ A Sbjct: 585 ERYGFDPKIGESQVGVAIGLGTTEVGGELIPVEVAVMPGRGSLTITGRAGDVMQESARAA 644 Query: 341 LLAVLHRHGGLQMA-----DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 L R L + D+ +++ G + SA + + A++S+L P+ D+ Sbjct: 645 LSYARSRADALGIEPDFQEKHDLHIHLPEGAIPKDGPSAGITMATALISALTKHPVRSDI 704 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVK 448 + GE+ L G + P+ +E+ A + G RR I P N VP++ M+ V+ Sbjct: 705 AMTGEITLRGRVLPIGGLKEKTIAAHRVGIRRLIAPEDNRRDLVTVPEQIAADMEFIWVE 764 Query: 449 KLSDALS 455 + ++ Sbjct: 765 NMDQVIA 771 >UniRef50_A8Z5Z0 ATP-dependent protease La n=7 Tax=Flavobacteria RepID=A8Z5Z0_SULMW Length = 855 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 62/425 (14%), Positives = 139/425 (32%), Gaps = 60/425 (14%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------ 144 G + + G PG GK++L L ++ + + G ++ Sbjct: 428 GDLRSPILCFYGPPGVGKTSLGRSIASALNRKYVRISLGGLNDEAEIRGHRKTYIGAMPG 487 Query: 145 --------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPG-SVA 195 ++ + +L E + L V+D Q D G ++ Sbjct: 488 RVLQSIKKAGTSNPVFVLDEIDKMGLGSQGNPSSAMLEVLDPEQNKEFYDNFLEMGYDLS 547 Query: 196 QV------------------RETAAYLTRFAKTRGVAI----VMVGHVTKDGS-----LA 228 +V R + + + I ++ + ++G + Sbjct: 548 KVIFIATANSLYTINIALLDRMEIIDMNGYTVEEKIEISKKHLIPKQLKENGLKSKDIIL 607 Query: 229 GPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVF--AMTEQGLREVSNPSAI 286 G K +E I+ G + + + + + + EV P Sbjct: 608 GVKQIEKIIESYTRESGVRSLEKNISKIVRYAAKNIAMNKKYLKRINMSKIEEVLGPPND 667 Query: 287 FLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAV 344 G + W G + +E L ++ V ++++ I Sbjct: 668 PEKYELIQVPGVVTGLAWTIVGGEIIYIESTLLKGRGNLSITGNVGEVMKESAT-IAFKY 726 Query: 345 LHRH---GGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 + H G+ ++ ++ GG+ SA + +L +++SS + + L + Sbjct: 727 IKAHNYEFGIDEKMFELYNIHIHAPEGGIHKDGPSAGITMLTSIISSFLKKKIRPYLAMT 786 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GE+ L G++ PV +E+I A + + I+ AN + K +G++ V K++ Sbjct: 787 GEITLRGKVLPVGGIKEKILAAKRANIKEIILSKANKKDIDDIKKVYLKGLKFHFVSKMN 846 Query: 452 DALSV 456 + + + Sbjct: 847 EVIDL 851 >UniRef50_A7NPJ3 ATP-dependent protease La n=4 Tax=Roseiflexus RepID=A7NPJ3_ROSCS Length = 836 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 76/457 (16%), Positives = 146/457 (31%), Gaps = 92/457 (20%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR----- 140 R+L G + I G PG GK++L L ++ + + G ++ Sbjct: 359 RMLAGSRLKSPIICFVGPPGVGKTSLGRSIAEALGRRFVRISLGGVHDEAEIRGHRRTYI 418 Query: 141 ---------AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSS 190 A + + + ML E + L V+D Q + Sbjct: 419 GAMPGRIVKAMKDAGTINPVFMLDEIDKLGSDFRGDPASALLEVLDPEQNVAFTDHYLDL 478 Query: 191 PGSVAQV------------------RETAAYLTRFAKTRGVAI---VMVGHVTKDGSLAG 229 P +++V R +L + + + I +V + LA Sbjct: 479 PYDLSRVLFITTANLLDPIPPALRDRMEVIHLPGYTEEEKLEIARRFLVPRQLEANGLAS 538 Query: 230 PKVLEHCIDCSVLLDGDA--------------DSRFRTL--------------------- 254 P E+ ++ L D DS R + Sbjct: 539 P---EYVAQSAIALMKDPVALSKMPGTVLRFSDSALRQIIRGYTYEAGVRNLEREIGAIC 595 Query: 255 RSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL---SRGDEVTSGSSVMVVWEGTRPLL 311 R R A + L P + DEV + + G + Sbjct: 596 RKVARRL-AEGRNYAHIIQASALNRYLGPPRYLYGLAEQQDEVGVATGMSWTANGGDVMA 654 Query: 312 VEIQALVDHSMMANPRRVAVGLEQNRLAILL---AVLHRHGGLQ---MADQDVFVNVV-G 364 VE+ + +++ ++ + ++ A L A G++ D+ ++V G Sbjct: 655 VEVSLMKGRGVLSLTGQLGEVMRESAQAALSFARANAEA-LGIKPKRFETTDIHIHVPVG 713 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 V SA + + A++S+ RP+ +D+ + GE+ L G + PV +E++ A + G Sbjct: 714 AVPKDGPSAGITMATALISAFTGRPVRRDVAMTGEITLRGRVLPVGGIKEKVLGAHRAGI 773 Query: 425 RRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 I+P N VP + V + + ++ Sbjct: 774 LTIILPRRNAVDLEEVPAHVKRRLNFVYVDHMMEVIA 810 >UniRef50_C1TMM3 ATP-dependent protease La n=2 Tax=Synergistaceae RepID=C1TMM3_9BACT Length = 771 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 78/441 (17%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLG 145 R L G G + + G PG GK++L + ++ ++ + G ++ Sbjct: 332 RKLAGDQARGGILCLVGPPGVGKTSLGRSVADAMGRKFVSMSLGGVRDEAEIRGHRKTYI 391 Query: 146 LPT--------------DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSS 190 + + ++ E + L V+D Q D Sbjct: 392 GSMPGRIMQKIKQVGTKNPVLLMDEIDKLGNDFRGDPASALLEVLDPSQNDRFVDHYLEV 451 Query: 191 PGSVAQV------------------RETAAYL--------TRFAKTRGVAIVMVGHVTKD 224 P +++V R L R AK + ++ ++ Sbjct: 452 PFDLSKVLFITTANVTHTIPSALLDRMEVIELSGYVMEEKLRIAKKHLLPKLL-----RE 506 Query: 225 GSLAGPKVLEHCIDCS---VLLDGDADSRFRTL--------RSHKNRF----GAVNELGV 269 L+ + D ++ + ++ R L R + + ++G Sbjct: 507 NGLSRKDL--TISDGVYRKIVGEYTREAGVRNLERNIASLCRKAAMKIVESENSDEKVGP 564 Query: 270 FAMTEQGLRE-VSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRR 328 +T + L++ + P L G ++ + W ++ I+A+ Sbjct: 565 IKVTAKNLKDYLGAPKRYDLRLPKSPRRGVALGLAWTQAGGEVLVIEAISTEGKGQVTLT 624 Query: 329 VAVG-LEQNRLAILLAVLHRHGG------LQMADQDVFVNVV-GGVKVTETSADLALLLA 380 +G + Q + L HGG + + DV ++V G + SA + + +A Sbjct: 625 GNLGSIMQESAQTAMGYLKGHGGQLGLKDVDWSGLDVHLHVPEGAIPKDGPSAGITMAVA 684 Query: 381 MVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP----- 435 ++S L R D+ + GE+ L G++ P+ +E+I A ++G +R IVP N P Sbjct: 685 ILSVLAGRRYLPDVAMTGEISLLGQVLPIGGIREKILAAKRNGIKRIIVPEGNRPDVEEL 744 Query: 436 -KKAPEGMQIFGVKKLSDALS 455 + +G++ V D Sbjct: 745 EEWVKDGLRFVFVSSAKDVFK 765 >UniRef50_Q31FD3 ATP-dependent protease La n=46 Tax=Bacteria RepID=Q31FD3_THICR Length = 878 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 77/456 (16%), Positives = 142/456 (31%), Gaps = 71/456 (15%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L D+ L + G L G + GS I + G PG GK+++ L ++ Sbjct: 405 LDDVKDRILEFLAVG------ALKGEI-SGSIICLVGPPGVGKTSIGRSIADTLGRKFYR 457 Query: 126 LYVTGEESLQQVAMRAHRL-----GLPTDNL---------NMLSETSIEQICLIAEEEQP 171 V G ++ G L ML E + Sbjct: 458 FSVGGMRDEAEIKGHRRTYIGAMPGKFVQALKDCETANPVIMLDEIDKIGSSYQGDPASA 517 Query: 172 KLMVIDSIQVMHMAD--------------------VQSSPGSVAQVRETAAYL------- 204 L V+D Q D + S PG + R L Sbjct: 518 LLEVLDPEQNSEFMDHYMDVRFDLSKTLFVCTANTLDSIPGPLLD-RMEVIRLSGYITEE 576 Query: 205 -TRFAKTRGVAIVMVGH-VTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFG 262 + AK ++ + K P + H I+ G + + + + + + Sbjct: 577 KIQIAKHHLWPSLLEDAGLNKKQIQITPATIRHVIEGYAREAGVRNLKKQLAKLIR-KLA 635 Query: 263 AVNELGVFAMTE---QGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVD 319 G T L E+ + ++ G+ + W + I+A Sbjct: 636 IKFVNGDMEQTTLHVNDLEEMLGQPRFTPEKTNQQM-GTVTGLAWTSMGGATLTIEASRV 694 Query: 320 HSM------MANPRRVAVGLEQNRLAILLAVLHRHGGLQ--MADQDVFVNVVGGV-KVTE 370 H++ V + + + L ++ V ++V G Sbjct: 695 HTLNRGFKLSGQLGDVMQESASIAYSYIASNLDKYKADPEFFDKAFVHLHVPDGATPKDG 754 Query: 371 TSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVP 430 SA + + A++S R+ + + L + GE+ L G++ PV +E++ A + G + I+P Sbjct: 755 PSAGVTMATALLSLARNEAIKKPLAMTGELSLTGQVLPVGGIREKVIAARRVGIKELILP 814 Query: 431 AAN------VPKKAPEGMQIFGVKKLSDALSVFDDL 460 N +P EGM + K D + + Sbjct: 815 DENRKDYDELPDYLKEGMTLHFAKHFDDVAKLTFHI 850 >UniRef50_C6HYB7 ATP-dependent protease La n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYB7_9BACT Length = 825 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 72/431 (16%), Positives = 143/431 (33%), Gaps = 64/431 (14%) Query: 89 GGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH------ 142 GG G + + G PG GK+TL + ++ + + G ++ Sbjct: 375 EGG--RGPILCLLGPPGVGKTTLGQSIARAMGREFVRVSLGGVRDEAEIRGHRRTYVGAM 432 Query: 143 --------RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGS 193 R + + ML E + L V+D+ Q Sbjct: 433 PGRIIAGLRKAQTKNPVFMLDEIDKVGADYRGDPSAALLEVLDTAQNKDFRDHYLDLAFD 492 Query: 194 VAQV------------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSL 227 +++V R L A++ + M G ++ D Sbjct: 493 LSRVFFLTTANVAQTIPPPLLDRMDLIPLSGYTWEEKLHIARSHLIPRAM-GELSLDARE 551 Query: 228 --AGPKVLEHCIDCSVLLDGDADSRFRT---LR-SHKNRFGAVNELGVFAMTEQGLREVS 281 L+ I G + LR ++R + + R + Sbjct: 552 FDLPDATLKKIIREFTREAGVRSLDRKITSILRKIVRDRALQSRKKKIVVKGPDLARYLG 611 Query: 282 NPSAIFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQN-RL 338 N +R + G + W G L VE A+ ++ ++++ R Sbjct: 612 NEYIEPETRLRKSGPGIVTGLAWTPNGGEVLFVESVAIPGSKGFILTGQLGDVMKESART 671 Query: 339 AILLA-VLHRHGGLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQD 393 A+ A + G+ + ++ ++V GG + SA + + A++S P+P Sbjct: 672 ALSFAQSRSKTLGIPPEFFSKNEIHIHVPGGAIPKDGPSAGITMTTAILSLATGIPVPST 731 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGV 447 + + GE+ L+G + PV +E++ A + G +PA N +P + + I V Sbjct: 732 VAMTGEISLSGRVLPVGGIKEKLIGAREAGITTIYLPAKNLKDTVELPDEVKRDLAIHPV 791 Query: 448 KKLSDALSVFD 458 + + + + VF Sbjct: 792 ETMDELIRVFF 802 >UniRef50_B5YK35 ATP-dependent protease La 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK35_THEYD Length = 667 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 71/431 (16%), Positives = 150/431 (34%), Gaps = 73/431 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTG--EES-------------LQQVA 138 GS + G PG GK+++ L ++ + + G +E+ ++ Sbjct: 241 KGSILCFAGPPGTGKTSIGKSIADALGRKFARISLGGIKDEAEIRGHRRTYAGAKPGRII 300 Query: 139 MRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV 197 R G+ + + ML E + L +D Q + P ++ V Sbjct: 301 EEIRRAGV-ANPVLMLDEIDKICQDFKGDPASALLEALDPEQNYAFIDHYLDVPFDLSGV 359 Query: 198 ------------------RETAAYLTRFAKT--RGVAI--VMVGHVTKDGSLAGPKVLEH 235 R + + + + +A+ ++ +T+ G P Sbjct: 360 MFIVTANIPDNIQHALLDRMEVIEFSGYTEEEKKNIALKHLIPKQITEQGLTEFPPEFSE 419 Query: 236 CIDCSVLLDGDADSRFRTLR--------------SHKNRFGAVNELGVFAMTEQGLREVS 281 ++ + ++ R L +N+ + +T + + + Sbjct: 420 ETILKIIQEYTREAGIRNLERMIATICRKIATEVVRENKPKNSIK-----VTPEVVEKYL 474 Query: 282 NPSAIFLSRGDE-VTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLA 339 P F D G +VW T ++ I+A ++G + + Sbjct: 475 GPRRYFFEVTDAKNRVGVVTGLVWTETGGDIIFIEAAKMRGKRELILTGSLGNIMKESAQ 534 Query: 340 ILLAVLHRHGGLQ------MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQ 392 L+ + + L D+ +++ G + SA + +A++S +RP + Sbjct: 535 AALSYVRSNSSLFGISEEAFDAFDIHIHIPQGAILKDGPSAGATIAMALISLFTNRPARR 594 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA------ANVPKKAPEGMQIFG 446 D+ V GE+ L+G I PV +E+I A + G + IVP N+P +G++I Sbjct: 595 DVAVTGELTLSGRILPVGGIKEKILAAKRAGVKTVIVPYRNKVDIENLPDDFKKGVEIIF 654 Query: 447 VKKLSDALSVF 457 ++K+ D + Sbjct: 655 IEKIEDVIDTI 665 >UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y8Q8_COPPD Length = 768 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 65/436 (14%), Positives = 145/436 (33%), Gaps = 79/436 (18%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-------- 144 + + G PG GK++L L +++ + + G ++ Sbjct: 340 PKAPILCLVGPPGVGKTSLAKAIATALNRKLVRISLGGIRDEAEIRGHRRTYVGAMPGRI 399 Query: 145 --GLPT----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV 197 G+ + + + +L E + + L +D Q P +++V Sbjct: 400 IQGIRSAGTKNPVFVLDEIDKLSSDFLGDPSAALLEALDPEQNYAFQDHYLEVPFDLSEV 459 Query: 198 ------------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPK 231 R + AK + + + S P+ Sbjct: 460 FFITTANNLYTIPPALLDRMEVIRVPGYTEEEKLHIAKDFILPKL------YEQSGLNPE 513 Query: 232 VLEHCIDCSVL-------------LDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278 + + L+ + S R L K G +T + + Sbjct: 514 EVSFSDQAIIRIIREYTREAGVRNLERNLLSILRKLAVEKLEKG----FSRVRITVKNVE 569 Query: 279 E-VSNPSAIFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQ 335 + + P + ++ G + W G +L+E Q + + + L++ Sbjct: 570 DYLGVPKFRYGKALEKPEIGVVAGLAWTEFGGETMLIECQVVKGKGQLILTGSLGQTLKE 629 Query: 336 NRLAILLAVLH--RHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRP 389 + +A L V + G+ D+ V+ G + SA + + AM+S+L+ P Sbjct: 630 SAMAALTYVRSRAKQLGIDEEFYKKYDIHVHAPEGAIPKDGPSAGITIATAMISALKKEP 689 Query: 390 LPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQ 443 +P DL + GE+ + G++ P+ +E++ A + G R I+P N + + + ++ Sbjct: 690 VPNDLAMTGEITITGKVLPIGGVKEKVLAAHRIGLDRVILPKDNKINMEEIGDEVKKKLR 749 Query: 444 IFGVKKLSDALSVFDD 459 + V + + + Sbjct: 750 FYFVDTMDQVVEIVFG 765 >UniRef50_B9XB79 ATP-dependent protease La n=2 Tax=Verrucomicrobiales RepID=B9XB79_9BACT Length = 833 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 73/425 (17%), Positives = 138/425 (32%), Gaps = 71/425 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------- 140 G + G PG GK++L L ++ + + G ++ Sbjct: 383 RGPILCFLGPPGVGKTSLGQSIADALGRKFARMSLGGIRDEAEIRGHRRTYIGSMPGRII 442 Query: 141 --AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV----------------- 181 R+G + + ML E + L V+D Q Sbjct: 443 QEMRRVGTK-NPVIMLDEIDKLGADFRGDPASALLEVLDPRQNNAFVDRYIDVPFDLSEV 501 Query: 182 --MHMADVQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPK 231 + A+ + + + R L AK ++V + ++G Sbjct: 502 IFIATANYMDAVPAPLRDRMEVIELPGYTEREKLEIAKNY----LVVRQLEENGLKPEQC 557 Query: 232 VLEHCIDCSVLLDGDADSRFRTL--------RSHKNRFGAVNELGVFAMTEQGLREVSNP 283 E V+ D ++ R L R R A E+ +T Q ++E+ P Sbjct: 558 QWEKSALSRVIEDYTREAGVRELERQIGAVCRGIAARV-ARGEIQAMTVTPQIVQEMLGP 616 Query: 284 SAIFLSRG-DEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAI 340 G + + G L +E + ++ + ++ A Sbjct: 617 PRYIRETRLKTSKPGVVTGLAYTPIGGEVLFIEATRYPGKGNITLTGQIGNVMRESVQAA 676 Query: 341 LLAVLH--RHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 L V + G+ D D+ V+V G V SA +A+ A+ S D P+ ++ Sbjct: 677 LSLVRSRVKELGISADAFRDMDIHVHVPSGAVPKDGPSAGVAMFTAIASLFSDTPVRSEV 736 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVK 448 + GEV L G + P+ +E+ A + G I+P N +P++ ++ + Sbjct: 737 AMTGEVTLRGLVLPIGGLKEKTLAALRAGIEEVIIPKLNEKDLFDLPEEVKNKLKFTLAE 796 Query: 449 KLSDA 453 + D Sbjct: 797 NVDDV 801 >UniRef50_Q4A696 Heat shock ATP-dependent protease n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A696_MYCS5 Length = 890 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 62/425 (14%), Positives = 128/425 (30%), Gaps = 65/425 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------GL 146 + + G PG GK+TL L ++ + + G + ++ G+ Sbjct: 456 ILALVGPPGTGKTTLAKAISEALNKKYVKISLGGVKDESEIRGHRRTYVGAMPGKIVKGV 515 Query: 147 P----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD---------------- 186 ++ + +L E + L V+D Q D Sbjct: 516 AKAGVSNAVFLLDEIDKMASDHKGDPASAMLEVLDPEQNAQFQDHYLEQEYDLSKIIFIA 575 Query: 187 ----VQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAG--PKV 232 Q+ P ++ R L + A+ + V + V D L + Sbjct: 576 TANYFQNIPEALID-RVEVIELDPYTLNEKVQIAQKHLIPKV-INEVYLDEKLFNIPEET 633 Query: 233 LEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLRE---VSNPSAI 286 L I+ G + + R + +L F ++ L E V+ Sbjct: 634 LRFIINRYTREAGVRGLKRILDKIARKIVIKRVLEPDLKSFDISLNNLEELLGVAPYKTD 693 Query: 287 FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 + + + G L +E+ + + I L + Sbjct: 694 EDKHDEIPGIATGLAYSTHGGSDLEIEVNVFKSEKGGIQLTGSLKDVMKESAQIALTYVR 753 Query: 347 RHGG------LQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 + + ++V G SA + A++S+L P+P + + GE Sbjct: 754 SNAKYFGIHSFDFDKHTIHIHVPEGATPKDGPSAGVTFTTAIISALTRLPVPNNYAMTGE 813 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + L G++ P+ +E+ A + +P AN +P + + VK+ + Sbjct: 814 ITLQGKVLPIGGLKEKSFAAYWKKIKYVFIPHANIDNLQKIPDEIKREITYIPVKRYDEI 873 Query: 454 LSVFD 458 + Sbjct: 874 FQILF 878 >UniRef50_C7RG14 ATP-dependent protease La n=3 Tax=Anaerococcus RepID=C7RG14_ANAPD Length = 776 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 140/421 (33%), Gaps = 60/421 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR--------AHRLG 145 GS I + G PG GK+++ L ++ ++ + G ++ A R+ Sbjct: 353 KGSVICLVGPPGVGKTSIAKSIARALDRKFVSMRLGGVTDESEIRGHRRTYVGAMAGRVL 412 Query: 146 LPTDNL------NMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 D + +L E + L V+D Q + P ++ V Sbjct: 413 ANIDRINVKNPVFLLDEIDKLGSDFRGDPSSALLEVLDPEQNDKFIDRYLDIPFDLSDVF 472 Query: 198 -----------------RETAAYLT--------RFAKTRGVAIVMVGHVTKDGSL-AGPK 231 R L+ AK VA M + K+ + Sbjct: 473 FITTANDANEIPDALYDRLEVIDLSGYTISEKESIAKKYLVAKEMENNGLKEDEITISDA 532 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGV--FAMTEQGLREVSNPSAIFLS 289 V+E I G + R + R G ++ Q + Sbjct: 533 VIEKIIKNYTREAGVRELE-RLIAKICRRAVKEILAGKDKVRVSMQNYTKYLGRERFLDD 591 Query: 290 RGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVLHR 347 + E G + W ++ ++A V ++G + + + +A + Sbjct: 592 AIEKEDQVGLVNGLAWTSVGGTMLSVEANVMEGKGNVEMTGSLGDVMKESGQVAMAYIRS 651 Query: 348 HG------GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 + G ++D+ V+ G SA + + AMVS+L + + D+ + GEV Sbjct: 652 NQADLGIRGKFYENKDIHVHFPEGATPKDGPSAGITMTTAMVSALTGKKVRSDIAMTGEV 711 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 + G + + +E+ A +G + I+P N +PK+ + + V K+S+ + Sbjct: 712 TIRGNVLAIGGLKEKALAAYSYGIKNVIIPKENERDTEDIPKEIRDKINFITVSKVSEVI 771 Query: 455 S 455 Sbjct: 772 E 772 >UniRef50_B6AMK4 ATP-dependent protease La n=2 Tax=Leptospirillum sp. Group II RepID=B6AMK4_9BACT Length = 816 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 134/421 (31%), Gaps = 59/421 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH-------------- 142 + G PG GK++L L + L + G ++ Sbjct: 386 ILCFVGPPGVGKTSLGESVAKALGRPFVRLSLGGIRDEAEIRGHRRTYVGSLPGRILQGM 445 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV---- 197 R TD + ML E + L V+D Q + P ++ V Sbjct: 446 RQAGVTDPVFMLDEIDKMAADFRGDPYSALLEVLDPRQNKNFSDHYLNLPYDLSHVLFLA 505 Query: 198 -RETAAYLTRFAKTRGVAIVMVGHVTKD----------------------GSLAGPKVLE 234 L R I + G+ ++ + LE Sbjct: 506 TANVLDTLPSPLLDRLEVIEIPGYTEEEKKGIARQHLWPRQRKENGISSKQADLTDAALE 565 Query: 235 HCIDCSVLLDGDADSRFRTLRS-HKNRFGA-VNELGVFAM-TEQGLREVSNPSAIFLSRG 291 I G R K G + F + +E + + P Sbjct: 566 RLIREYTRESGVRSLERRLGSLCRKMAVGILEGKKKTFRIGSETLVDWLGQPLYRETPDE 625 Query: 292 DEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH--R 347 ++ G + W G L VE + + ++ ++++ A L V Sbjct: 626 EKPLVGVVRGLAWTPTGGDLLFVEATLMKGRGNLKVTGKLGDVMQESAQAALTYVRSHAE 685 Query: 348 HGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLA 403 G+ + +D+ ++V G + SA + + +AM S+ +RP+ D+ + GE+ L Sbjct: 686 STGVPVDFWSRKDIHLHVPEGAIPKDGPSAGITMAVAMASAATNRPVRGDIAMTGEITLR 745 Query: 404 GEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVF 457 G I P+ +E++ A + + ++P N +P + ++I V+++ Sbjct: 746 GRILPIGGLKEKLLAARRFSMKEVLIPEENERDLSEIPAEVKNALRITPVQRMEQVFDRV 805 Query: 458 D 458 Sbjct: 806 F 806 >UniRef50_Q01QV2 ATP-dependent protease La n=6 Tax=Bacteria RepID=Q01QV2_SOLUE Length = 790 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 74/433 (17%), Positives = 148/433 (34%), Gaps = 72/433 (16%) Query: 92 VVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR----------- 140 V+ G + G PG GK++L L ++ + + G ++ Sbjct: 355 VLKGPILCFVGAPGVGKTSLGRSIARSLGRKFARISMGGMHDEAEIRGHRRTYIGALPGQ 414 Query: 141 ---AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQ 196 A R D + ML E + L V+D Q + P +++ Sbjct: 415 IVQALRRAGSNDPVFMLDEVDKLGRDFRGDPASALLEVLDPEQNSTFRDNYLDVPFDLSK 474 Query: 197 V------------------RETAAYLTRFAKTRGVAI---VMVGHVTKDGSLAGPKVLEH 235 V R L + + V I ++ T + L G + +E Sbjct: 475 VLFITTANVLDPIPDALRDRMEIITLEGYTEQEKVIIAFRYLIPRQTAENGLDGTQDIEF 534 Query: 236 CIDCS--VLLDGDADSRFRTLRSH-------KNRFGAVNELGVFAMTEQGLRE-VSNPSA 285 D ++ ++ R L + R A +T + + + + P Sbjct: 535 GDDAVRHIVRRYTREAGVRNLERLIGTICRKQARRIAEGTREKMTVTPELVEKDLGAPRY 594 Query: 286 IFLSRGDEVTSGSSVMVVWE----GTRPLLVEIQALVDHSMMANPRRVAVG----LEQNR 337 + + TS V V G L +E + N + G + Q Sbjct: 595 RTDTEVADRTSRPGVAVGLAWTPVGGDVLFIEAGRM----PGGNKGLIMTGQLGPVMQES 650 Query: 338 LAILLAVLHRHG---GLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPL 390 + L + + G+ D+ ++V G + SA + + A++S L +R + Sbjct: 651 VQAALTWVRGNATKYGIDPDLFKTSDIHIHVPAGAIPKDGPSAGITMATALLSMLTERRV 710 Query: 391 PQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQ 443 +L + GE+ L G++ P+ +E++ A + G R I+P N + + + +Q Sbjct: 711 RTNLAMTGEITLTGQVLPIGGIKEKVLAAKRSGVREVILPFENEVNVIEDLKSEQIDDIQ 770 Query: 444 IFGVKKLSDALSV 456 + VK + + + + Sbjct: 771 LHYVKAMEEVVEL 783 >UniRef50_C4ZGF6 ATP-dependent protease La n=5 Tax=Bacteria RepID=C4ZGF6_EUBR3 Length = 770 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 73/427 (17%), Positives = 139/427 (32%), Gaps = 71/427 (16%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH-------------- 142 I + G PG GK+++ L ++ + + G ++ Sbjct: 348 IICLVGPPGTGKTSIARSIASALEKKYVRISLGGVRDEAEIRGHRKTYIGAMPGRIVNGL 407 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV---- 197 R ++ L +L E + L V+DS Q P +++V Sbjct: 408 RQAGVSNPLMLLDEIDKVSSDYKGDTSAALLEVLDSEQNCRFRDHYIEMPVDLSEVLFIA 467 Query: 198 --------------RETAAYL--------TRFAKTRGVAIVMV------GHVTKDGSLAG 229 R + AK +V + K+ Sbjct: 468 TANEVSGIPKPLLDRMELIEVSSYTENEKFHIAKEH-----LVEKQKSKNGIKKEQLTIT 522 Query: 230 PKVLEHCIDCSVLLDGDADSRFRTLRSH---KNRFGAVNELGVFAMTEQGLRE-VSNPSA 285 L+ I G S RT+ R + +T+ L+ + NP Sbjct: 523 DGALKDIIRLYTREAGVR-SLERTIGKLCRKAAREIFKDSEAAVKVTKTNLKTYLGNPKY 581 Query: 286 IFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 + D G + W G L VE+ L + ++ ++++ A L Sbjct: 582 SPEKKNDHAEVGIVRGLAWTSVGGVTLEVEVNVLPGKGELVLTGKLGDVMKESAQAALSY 641 Query: 344 VLHRHGGLQMA-----DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 V G + D+ +++ G V SA + + AM+S++ DR + D+ + Sbjct: 642 VRSISEGYGIDAEFYTKHDIHIHIPEGAVPKDGPSAGITMATAMLSAITDRAVRADVAMT 701 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLS 451 GE+ L G + P+ +E++ A G + +P N + +GM+I V++ S Sbjct: 702 GEITLRGRVLPIGGLKEKLLAAKVIGIKTVCIPKDNEKDLEEISKEITDGMEIVPVERFS 761 Query: 452 DALSVFD 458 + Sbjct: 762 QVEKIAF 768 >UniRef50_Q0SPS3 ATP-dependent protease n=25 Tax=Clostridia RepID=Q0SPS3_CLOPS Length = 619 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 79/442 (17%), Positives = 161/442 (36%), Gaps = 85/442 (19%) Query: 98 ILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLP---------- 147 I++ G PG GK+T + + A+++K+ ++ + + + L Sbjct: 183 IILYGPPGVGKTT-AARIALETAKKLKS--TPFDDRSKFIEVNGTTLRWDPREITNPLLG 239 Query: 148 --TDNLNMLSETSIEQIC------LIAEEEQPKLMVIDSIQVM--------------HMA 185 D + S+ + +I + E ++ ID I + Sbjct: 240 SVHDPIYQGSKRDLAEIGVPEPKPGLVTEAHGGILFIDEIGELDEILQNKLLKVLEDKRV 299 Query: 186 DVQSSPGSVAQVRETAAYLTRFAKTRGVAI--VMVGHVTKDGSLAGP------------- 230 + SS E ++ +G V++G T++ P Sbjct: 300 EFSSSYYDPDD--ENTPKYIKYLFDKGAPADFVLIGATTREPGEINPALRSRCTEVYFEP 357 Query: 231 ---KVLEHCIDCS-----VLLDGDADSRFRTLRSHKNR-------------FGAVNELGV 269 + +E + + V L+ + + + R +G E+ Sbjct: 358 LSSRDIEKIVLNAAKKLNVKLEEGLEKKIASYTIEGRRAVNILADAYGHAIYGLEGEVPE 417 Query: 270 -FAMTEQGLREVSNPSAI----FLSRGDEVTSGSSVMVVWEG--TRPLLVEIQALVDHSM 322 +T + L EV + L +E G + G + +E A Sbjct: 418 DLEITSKDLNEVVSIGRFTPYEILENLEEKEVGHVYGLGVSGFLGSTIEIEATAFKAKKK 477 Query: 323 MANPRR---VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLL 379 A R A + ++ + +V+ R + D D+ VNV+GG K+ SA A+ + Sbjct: 478 GAGKIRFNDTAGSMAKDSVFNAASVIKRLTDKDINDYDIHVNVIGGGKIDGPSAGAAITI 537 Query: 380 AMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK--K 437 ++S+L ++P+ QDL + GE+ L G+I+PV E+I A + G + VP N + K Sbjct: 538 CIMSALLEKPIRQDLAITGEISLRGKIKPVGGIFEKIYGARRKGIKLVTVPKDNENEIPK 597 Query: 438 APEGMQIFGVKKLSDALSVFDD 459 E +++ + + + + + + Sbjct: 598 GLEDIEVKAISSIEELMEIAFN 619 >UniRef50_C0B7I7 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7I7_9FIRM Length = 154 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 76/145 (52%), Gaps = 13/145 (8%) Query: 1 MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60 MAKA K F C CG + +W GQC C WN+ E + S + +A Sbjct: 1 MAKAKKSVFFCQNCGHEESKWLGQCPMCKEWNSFVEECVTTS--------NTAAVKAAKE 52 Query: 61 AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120 ++ LS++ E R +T KE DRVLGGG+VPGS IL+GG+PG GKSTLLLQ KLA Sbjct: 53 IRIVPLSEVKTENEERVTTEIKELDRVLGGGIVPGSLILVGGDPGIGKSTLLLQVCQKLA 112 Query: 121 QQMKTLYVTGEESLQQVAMRAHRLG 145 ++ + T Q R RL Sbjct: 113 KKKNERFCTY-----QGKNRFARLN 132 >UniRef50_C7NAL8 ATP-dependent protease La n=9 Tax=Fusobacteriaceae RepID=C7NAL8_LEPBD Length = 798 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 72/464 (15%), Positives = 153/464 (32%), Gaps = 87/464 (18%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L ++ L + K+ + L GS I + G PG GK++L + ++ Sbjct: 323 LEEVKERILEFLA--IKKLNNTL-----KGSIICLVGPPGVGKTSLAHSVARSMNRKFTR 375 Query: 126 LYVTGEESLQQVAMRAHRL---------------GLPTDNLNMLSETSIEQICLIAEEEQ 170 + + G ++ G+ + + + E + Sbjct: 376 ISLGGVRDEAEIRGHRRTYVGAMPGRIINSLKQVGVN-NPVMLFDEIDKMASDFRGDPAS 434 Query: 171 PKLMVIDSIQVMHMAD--------------------VQSSPGSVAQVRETAAYL------ 204 L V+D Q D + PG + R + Sbjct: 435 AMLEVLDPAQNNSFEDHYIDHTFDLSNVFFICTANDLGGIPG-PLRDRMEIISIESYTEF 493 Query: 205 --TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL---LDGDADSRFRTLR---- 255 AK ++ ++ L K+ D +++ + ++ R LR Sbjct: 494 EKLNIAKRY-----LIPQTQEENGLKEFKI--SFSDKAIMKIINEYTREAGVRNLRREIG 546 Query: 256 -----SHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV--MVVWEGTR 308 K + ++ +++E +++ + + + E V + W Sbjct: 547 KLFRKIAKEILVSKSDSKKISVSEAKIKKYLGNAKFRVDKVKEKEGKIGVVNGLAWTAVG 606 Query: 309 PLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ-------DVFVN 361 +E+QA+ +G A + RH ++ + DV ++ Sbjct: 607 GTTLEVQAVKMEGKGILQLTGKLGDVMQESARVAYSYVRHIKNELGIKEKFNEITDVHLH 666 Query: 362 VV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420 G V SA + + A++S L ++ + QD+ + GE+ + GE+ V +E++ A Sbjct: 667 FPEGAVPKDGPSAGITITTAIISVLTNKEVRQDVAMTGEITITGEVLAVGGIKEKVIGAH 726 Query: 421 KHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 + G R ++P N +PK+ + M+ + K D V Sbjct: 727 RVGIRDVVLPFDNKVDTEELPKEIADQMKFYFAKTYDDVKKVVF 770 >UniRef50_C0HA85 Lon protease homolog n=1 Tax=Salmo salar RepID=C0HA85_SALSA Length = 1014 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/440 (16%), Positives = 144/440 (32%), Gaps = 73/440 (16%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPT 148 G G + G PG GK+++ L ++ V G + ++ +P Sbjct: 573 GSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPG 632 Query: 149 DNLNMLSETSIEQICLIAEEE------------QPKLMVIDSIQVM-HMADVQSSPGSVA 195 + L +T E ++ +E L ++D Q + P ++ Sbjct: 633 KIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLDPEQNFNFLDHYLDVPVDLS 692 Query: 196 QV------------------RETAAYLTRFAKTRGVAI---VMVGHV------TKDGSLA 228 +V R ++ + +AI +V + T+D + Sbjct: 693 KVLFICTANVTDTIPEPLRDRMEMINVSGYVAQEKLAIAEKYLVPQLRTQCGLTEDTTNI 752 Query: 229 GPKVLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLRE-VSNPS 284 P+ L I G + + + R R + E V +T L++ V P Sbjct: 753 SPEALNLLIRQYCRESGVRNLQKQVEKVFRKVAFRIVSGEETAV-QVTPDNLQDYVGKPI 811 Query: 285 AIFLSRGDEVTSGSSVMVVWE--GTRPLLVEI-------QALVDHSMMANPRRVAVGLEQ 335 D G + + W G L +E D + G Sbjct: 812 FTVDRMYDVTPPGVVMGLAWTAMGGTTLFIETSLRRPRDTGGKDKDGPRDGSLEVTGQLG 871 Query: 336 NRLAILLAV--------LHRHG--GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSS 384 + + + L + + + ++V G SA ++ A++S Sbjct: 872 DVMKESSKIACTFARTFLMKQQPDNDFFSGAHLHLHVPEGATPKDGPSAGCTIVTALLSL 931 Query: 385 LRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKA 438 + P+ +++ + GEV L G+I PV +E+ A + G I+PA N +P+ Sbjct: 932 ATNTPVRENVAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCMILPAENKKDFSDLPEFI 991 Query: 439 PEGMQIFGVKKLSDALSVFD 458 EG+++ V S + Sbjct: 992 TEGLEVHFVDHYSKMYPIVF 1011 >UniRef50_Q59185 ATP-dependent protease La n=20 Tax=Borrelia RepID=LON1_BORBU Length = 806 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 61/426 (14%), Positives = 125/426 (29%), Gaps = 61/426 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH----------- 142 G+ IL+ G PG GK+++ L + V G ++ Sbjct: 381 KGAIILLVGPPGVGKTSIGAAIAKVLRTKFFRFSVGGMRDESEIKGHRRTYVGALPGKII 440 Query: 143 ---RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 R+ + ++ E + L V+D Q + P ++ V Sbjct: 441 QGLRITKTNSPVFLIDEVDKISASSYGDPFSVLLEVLDPEQNVRFRDHYLDLPFDISNVF 500 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMV-GHVTKDGSLAGPK 231 R + A+ + V+ V KD Sbjct: 501 FILTANSVETIPRPLLNRMEIIEISGYIDNEKIEIARKYLIPKVLSENGVDKDSLKFQSS 560 Query: 232 VLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL 288 L +G + + +R + E+ + ++ L E Sbjct: 561 SLVQIAQEYARDNGVRNFEKYLNKIVRKVARKLIENTEVKSYQISNDNLEEYVGVPVFRK 620 Query: 289 SRGDEVTSGSSV-MVVWEGTRPLLVEIQALVDHSMMA---NPRRVAVGLEQNRLAILLAV 344 V + W + I+ + S + R+ ++++ V Sbjct: 621 ESMPNAMYSGMVMGLAWTNYGGSTLMIETVKTESKVGGIKLTGRLGDVMKESANIAYTYV 680 Query: 345 LHRHGGLQ-----MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFG 398 G L + +++ G SA + + A +S ++ + L + G Sbjct: 681 NSIKGDLSISKSFFEKNIIHLHIPEGATPKDGPSAGITIASAFISLALNKVVRPHLAMTG 740 Query: 399 EVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSD 452 E+ L G + + +E+I A + G IVP AN +P G+ + V + + Sbjct: 741 ELSLTGNVMMIGGLKEKIIAAKRSGVEHIIVPKANRVDLEEIPTNIKSGINFYLVDNMRE 800 Query: 453 ALSVFD 458 + + Sbjct: 801 VIKLLF 806 >UniRef50_Q9ZD92 ATP-dependent protease La n=15 Tax=Rickettsieae RepID=LON_RICPR Length = 784 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 69/425 (16%), Positives = 147/425 (34%), Gaps = 65/425 (15%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHR-LGL----- 146 + G + + G PG GK++L+ + ++ + G ++ LG Sbjct: 347 IRGPILCLIGPPGVGKTSLVKSIAEGMGRKYTKFSLGGVRDEAEIRGHRKTYLGSMPGKI 406 Query: 147 --------PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV----MHMADVQSSPGSV 194 ++ + +L E + L V+D Q H +V+ +V Sbjct: 407 LGQLKKIKTSNPVMLLDEIDKMSSDFRGDPASALLEVLDPEQNSHFVDHYLEVEYDLSNV 466 Query: 195 AQVR-ETAAYLTRFAKTRGVAIVMVGHVTKD--------------------------GSL 227 + + L R R I + G+V ++ Sbjct: 467 VFIATANSHDLPRALSDRMEKIYISGYVEEEKLQIAKNYLVPKQFKMHKIKEDEITISEA 526 Query: 228 AGPKVLEHCID--CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 A ++ + L+ + + R ++ K + A + ++ L E Sbjct: 527 AILDLIRYYTKESGVRALEREICALTR--KALK-QILANKTVKHISIDSNNLEEFLGAKK 583 Query: 286 I-FLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILL 342 F E GS+ + + G L +E A + ++ ++++ +A Sbjct: 584 YNFGLAEKEDQIGSTTGLAYTEVGGELLTIEALAFSGKGEIKTTGKLGDVMKESAMAAYS 643 Query: 343 AVLHR--HGGLQMADQ---DVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVV 396 R + GL+ + D+ ++V G + SA AL +VS + P+ + + + Sbjct: 644 CFRSRATNFGLKYDNYKDFDIHIHVPAGAIPKDGPSAGCALFTTIVSLMTKIPVHRTVAM 703 Query: 397 FGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKL 450 GE+ L G + P+ +E++ A++ G + ++P NV E ++I V + Sbjct: 704 TGEITLRGNVLPIGGLKEKLLAASRGGIKTVLIPEENVKDLKDIPPNIKENLEIISVSNI 763 Query: 451 SDALS 455 L Sbjct: 764 DQVLK 768 >UniRef50_C5RPE3 ATP-dependent protease La n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPE3_CLOCL Length = 786 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 63/421 (14%), Positives = 132/421 (31%), Gaps = 59/421 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------- 140 G + + G PG GK+++ + + + + G + Sbjct: 355 KGPILCLVGPPGVGKTSIARSIANTIGRNFVRISLGGVTDEADIRGHRKTYVGAMPGRIA 414 Query: 141 -AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 A + + L +L E L V+DS Q ++Q+ Sbjct: 415 YALKQAKTKNPLILLDEIDKMSGNYKGNPADALLEVLDSEQNSSFRDHYLEVDLDLSQIL 474 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLA-GPK 231 R + +K + + H +D S+ Sbjct: 475 FITTANSLETIPRPLLDRMEIIEVSGYTNEEKFNISKKYLIPKQLKEHTIEDKSIIFSDN 534 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT---EQGLREVSNPSAIFL 288 + + ID G + + + G +T ++ + F Sbjct: 535 AIYYIIDHYTRESGVRSLERNIAAVVRKSITYIVKTGKNKVTINVNTVMKYLGKEKYTFD 594 Query: 289 SRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 E G + W G L VE+ + + ++ ++++ A V Sbjct: 595 KVLKEDKIGVVTGMAWTAYGGDTLPVEVATMKGSGKLQLTGQLGDVMKESANAGFSYVRS 654 Query: 347 RHGGLQMADQ-----DVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 + + D+ ++V G V SA + ++ A+VS L + P+ ++ + GE+ Sbjct: 655 NSFKYNIDENFYKERDIHIHVPEGAVPKDGPSAGVTMITALVSVLTNTPVRHNVAMTGEI 714 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G + P+ +E+ A + G I+P N VPK +++ + + L Sbjct: 715 SLTGRVLPIGGLKEKTLAAYRAGVDTIIIPKDNEKDLEKVPKTVLSKLKVVIAEHVDTVL 774 Query: 455 S 455 + Sbjct: 775 N 775 >UniRef50_Q6ML73 ATP-dependent protease La n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML73_BDEBA Length = 793 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 69/433 (15%), Positives = 142/433 (32%), Gaps = 74/433 (17%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 GS ++ G PG GK++L L ++ + + G ++ Sbjct: 346 QGSILMFIGPPGVGKTSLGKSIARALGKKYVRVALGGVRDDAEIRGHRRTYIGALPGRII 405 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-----------------M 182 D + +L E + L V+D Q Sbjct: 406 AGIKKAGENDPVFILDEIDKLTRGFGGDPASAMLEVLDPEQNNTFQDHYLDTPFDLSKVF 465 Query: 183 HMADVQSSPGSVAQV--RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSL-AGPK 231 +A S G + R L + A++ + H ++ L + Sbjct: 466 FIATANSLEGIPLPLLDRMEVIDLSGYTVDEKRQIARSHLWPKQLKEHGLEENQLQITDQ 525 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGL---REVSNPSAIFL 288 L + G D + + K+ + + + +GL E + IF Sbjct: 526 ALTKLLTHYTREAGVRDLQRKIASICKH-------MSLKIIKSEGLPLLVEEQDLEDIFG 578 Query: 289 SRGDEV-------TSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLA 339 + G + W G L +E + + ++ + Q Sbjct: 579 AERFSADMIGSLLPPGVVTGLAWTPVGGDILFIESAQMPGKGNLLLTGQLGE-VMQESAK 637 Query: 340 ILLAVLHRHGGLQ-----MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQD 393 I L +L L A +D+ V+V G + SA + +L +M S L ++P+ Sbjct: 638 IALTLLKSRLPLLDPLLDFAKKDIHVHVPAGAIPKDGPSAGITMLTSMASMLLNKPVDPK 697 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGV 447 + + GE+ L G + PV +E++ A + G + ++ N +P+ + ++ V Sbjct: 698 VAMTGEISLRGSVMPVGGIKEKVIAAHRAGVQEILLCKRNEKDLREIPEDIRKDLRFHFV 757 Query: 448 KKLSDALSVFDDL 460 + +++ L + + Sbjct: 758 EDVNEVLKITLGV 770 >UniRef50_A9KH99 ATP-dependent protease La n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KH99_CLOPH Length = 809 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 68/460 (14%), Positives = 150/460 (32%), Gaps = 104/460 (22%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------GL 146 I + G PG GK+++ L ++ + + G ++ GL Sbjct: 349 IICLVGPPGTGKTSIARSIAKALNKEYVRISLGGVRDEAEIRGHRRTYVGALPGRIITGL 408 Query: 147 PT----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV---- 197 + L +L E + L V+DS Q + P +++V Sbjct: 409 KQAKVKNPLMLLDEIDKMSSDYKGDTASAMLEVLDSEQNCNFVDHYVEIPVDLSEVMFIA 468 Query: 198 --------------RETAAYLTRF----------------------AKTRGVAIV----- 216 R ++ + K ++I Sbjct: 469 TANTTQTIPKPLLDRMEIIEVSSYTENEKFHIAKNHLLNKQIEKNGLKKSQISISEKALR 528 Query: 217 -MVGHVTKDGSLAGPKVLEHCIDCSVL------LDGDADSRFRTLRSHKNRFGAVNELG- 268 ++ T++ AG + LE I L+ ++ ++S KN+ N+ Sbjct: 529 KIISDYTRE---AGVRGLERKISEVCRKIARELLEQESKENQNLIKSAKNKSNNKNQSHS 585 Query: 269 ------------------VFAMTEQGLREVSNPSAI---FLSRGDEVTSGSSVMVVWEGT 307 +TE+ + S+ DEV + G Sbjct: 586 EVAAAVEAEEISVTTKPSKIKVTEKNITTYLGKPKFRNEIASQKDEVGIVCGLAWTSVGG 645 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAV--LHRHGGLQ---MADQDVFVNV 362 L +E+ +L + ++ ++++ + + L + + D+ +++ Sbjct: 646 TTLQIEVNSLPGKGALILTGQMGDVMKESAQLGISYIRSLSKEYKISEEYFQKNDIHIHI 705 Query: 363 VGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 G SA + + AM+S++ + + + + GE+ L G + P+ +E++ A Sbjct: 706 PEGATPKDGPSAGITMATAMLSAITGKKVHAKVAMTGEITLRGRVLPIGGLKEKLLAAKN 765 Query: 422 HGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALS 455 G ++ ++P N P + EGM++ V + + L Sbjct: 766 TGIKKVLIPEKNRPDLEELEQEITEGMEVICVATMDEVLK 805 >UniRef50_Q4P2V5 Lon protease homolog n=4 Tax=cellular organisms RepID=Q4P2V5_USTMA Length = 1129 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 71/447 (15%), Positives = 155/447 (34%), Gaps = 83/447 (18%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPT 148 G +L+ G PG GK+++ L + L + G ++ G Sbjct: 647 KGPILLLVGPPGTGKTSIAKSLASALQRPFTRLSLGGVRDEAEIRGHRRTYVGAMPGSIV 706 Query: 149 DNLNMLSETS----IEQICLIA-------EEEQPKLMVIDSIQVM-HMADVQSSPGSVAQ 196 +L + + ++++ + + L V+D Q + P +++ Sbjct: 707 SSLRKVGVSDPVILLDEVDKLGSGNGLHGDPMAAMLEVLDPEQNHTFSDHYINVPIDLSR 766 Query: 197 V------------------RETAAYLTRFAKTRGVAI----VMVGHVTKDGSLAGPKVLE 234 V R +++ + AI ++ + G + V+ Sbjct: 767 VLFIATANSLDTISPPLLDRTEVIHISGYTHDEKTAIARQYLLPKQIKAQGLTSDQLVVT 826 Query: 235 HCIDCSVLLDGDADSRFRTLR--------------------SHKNRFGAVNELGVFAMTE 274 + V + ++ RTL + ++ G E + E Sbjct: 827 DEVLLKVAMGYTREAGVRTLEREIGALARAKAVEYSQSKKGTLRDEHGKPIEYDPV-IRE 885 Query: 275 QGLREVSNPSAIFLSRGDEV-TSGSSVMVVWEGTR-PLLVEIQALVDHSMMANPRRVAVG 332 L + P + G S + ++G+ ++ I++L+ + Sbjct: 886 ADLEKYLGPDTYEPEVAEANARPGVSTGLAYQGSGSGGILHIESLLLPPGSGYLKLTGSL 945 Query: 333 LEQNRLAILLA------------VLHRHGGLQMADQDVFVNVV-GGVKVTETSADLALLL 379 + R + LA ++H + D+ +++ G + SA +A+ Sbjct: 946 GDVIRESAELALSWVKGNAFQLGIMHTR-DSEFPKNDIHLHLPSGAIPKDGPSAGVAMTC 1004 Query: 380 AMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------ 433 A+VS P+ L + GEV L G + PV +E+++ A++ G R+ ++P N Sbjct: 1005 ALVSLFTKTPISPYLAMTGEVTLRGVVMPVGGIREKLTAASRAGIRKVLLPHRNRKDVEA 1064 Query: 434 -VPKKAPEGMQIFGVKKLSDALSVFDD 459 +PKK + ++I VK + +A+ Sbjct: 1065 DLPKKVRDELEIKYVKTVWEAMEAAFG 1091 >UniRef50_C1AAM1 ATP-dependent protease La n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAM1_GEMAT Length = 847 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 74/441 (16%), Positives = 148/441 (33%), Gaps = 79/441 (17%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G +L G PG GK+++ L ++ + + G + Sbjct: 393 RGPILLFNGPPGVGKTSIAKSIARSLGREYVRVALGGARDEADIRGHRRTYVGAMPGRII 452 Query: 145 -GLPT----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQV- 197 G+ + + +L E + L V+D Q D P +++V Sbjct: 453 QGMKQAGSRNPVFLLDEVDKLGQSYQGDPSSALLEVLDPAQNDSFTDHYLGVPFDLSEVL 512 Query: 198 -----------------RETAAYLTRFA---KTRGVAIVMVGHVTKDGSLAGPKVLEHCI 237 R + + K ++ ++ LAG + L Sbjct: 513 FIATSNFIQNIPGPLLDRMEVVDFSGYTEREKKEIALSYLIPRQLEESGLAG-RGLSFTD 571 Query: 238 DCSVLL--DGDADSRFRTL--------RSHKNR--FGAVNELGVFAMTEQGLREVSNPSA 285 D + + + +S R L R R G + ++ +RE+ Sbjct: 572 DAVMKVISEYTRESGVRQLERQLGAVARKVARRVAMGDSGTIDDKVISADEVRELLGRPK 631 Query: 286 IFLSRGDEVTSGSSVMVVWE---GTRPLLVEIQ---ALVDHSMMANPRRVA------VGL 333 + R +E ++ G + VE + S P RV G Sbjct: 632 VHPERANEHDEVGISTGMYYTPMGGDIMFVEASIRRGITRSSDEEEPTRVGPIALILTGQ 691 Query: 334 --EQNRLAILLAVLHRHGGLQM---------ADQDVFVNVVGG-VKVTETSADLALLLAM 381 + + + A+ + + + + ++V G + SA +A+ A+ Sbjct: 692 LGDVMKESARAALTYATNNADLLGIPRERMQSASEAHIHVPAGAIPKDGPSAGIAIATAL 751 Query: 382 VSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VP 435 VS L +R + +D+ + GE+ L G + P+ +E++ A + G + I+P AN VP Sbjct: 752 VSELSNRKVRRDVSMTGEITLRGRVLPIGGVKEKVLGAHRAGIKEVIIPKANEADLEDVP 811 Query: 436 KKAPEGMQIFGVKKLSDALSV 456 + + V+ LS+ L++ Sbjct: 812 DEVRAQLTFHPVETLSEVLAI 832 >UniRef50_P37945 ATP-dependent protease La 1 n=26 Tax=Firmicutes RepID=LON1_BACSU Length = 774 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 67/421 (15%), Positives = 138/421 (32%), Gaps = 59/421 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + + G PG GK++L L ++ + + G ++ Sbjct: 346 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRII 405 Query: 145 -GLP----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 G+ + + +L E + L V+D Q +++V Sbjct: 406 QGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 465 Query: 198 -RETAAYLTRF---AKTRGVAIVMVGHVTKDG-SLAGPKVL-----EHC----------- 236 TA L + R I + G+ + + +L EH Sbjct: 466 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQ 525 Query: 237 IDCSVLLDGDADSRFRTLRSH-------KNRFGAVNELGVFAMTEQGLREVSNPSAIFLS 289 ++ ++ R+L + E +TE+ L++ Sbjct: 526 AILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRYG 585 Query: 290 RGD-EVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 + + E G + + G L +E+ + ++ + ++ A V Sbjct: 586 QAETEDQVGVVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRS 645 Query: 347 RHGGLQMA-----DQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 + L + D+ ++V G V SA + + A+VS+L R + +++ + GE+ Sbjct: 646 KTEELGIEPDFHEKYDIHIHVPEGAVPKDGPSAGITMATALVSALTGRAVSREVGMTGEI 705 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G + P+ +E+ A + G I P N +P+ EG+ L + L Sbjct: 706 TLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVL 765 Query: 455 S 455 Sbjct: 766 E 766 >UniRef50_Q1J1A4 ATP-dependent protease La n=8 Tax=Deinococci RepID=Q1J1A4_DEIGD Length = 820 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 70/422 (16%), Positives = 133/422 (31%), Gaps = 60/422 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH----------- 142 G ++ G PG GK+++ L ++ + + G + Sbjct: 363 KGPILVFTGPPGVGKTSIAQSIAKALGRKYVRIALGGARDESDIRGHRRTYIGAMPGRII 422 Query: 143 ---RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 R + + +L E + L V+D Q P +++V Sbjct: 423 QGIRTAGTKNPVILLDEVDKLGSSYQGDPSAALLEVLDPAQNQHFTDHYLGVPFDLSEVM 482 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLA-GPK 231 R AK + + + K ++ Sbjct: 483 FIATANYPEQIPAALMDRMEVIDFSSYIEQEKLEIAKRYLLPRQITANGLKPNQISFTDA 542 Query: 232 VLEHCIDCSVLLDGDADSRFRT---LRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL 288 LE I G + R R A E+ +T++ L Sbjct: 543 ALERLISHYTREAGVRNLEREIGTVARKVARRI-ATGEVKRVKVTDKELDRYLGQHRYLP 601 Query: 289 S-RGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA-V 344 G E G S + + G L VE + ++ + V E R A+ A Sbjct: 602 ETEGQEDKVGVSTGMFYTPVGGDILFVETSVMPGKGLVLTGQLGDVMKESARAALTYAKS 661 Query: 345 LHRHGGLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 L + + ++ ++V G + SA A++ +++S+L P+ D+ + GE+ Sbjct: 662 NAERFHLDRDRIDNSEIHIHVPAGAIPKEGPSAGGAMVTSLISALSGIPVRHDVAMTGEM 721 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G P+ +E++ A + G + I+P AN +P M+ + + L Sbjct: 722 TLTGRYLPIGGLKEKVLGARRAGIKHIIMPKANEGDLRDIPLHLRASMRFHPCETVDQVL 781 Query: 455 SV 456 V Sbjct: 782 DV 783 >UniRef50_B7FSL4 Lon protease homolog n=2 Tax=Bacillariophyta RepID=B7FSL4_PHATR Length = 882 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 145/453 (32%), Gaps = 85/453 (18%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------ 144 G V G + + G PG GK+++ L +Q V G + ++ Sbjct: 424 GSVQGKILCLSGPPGTGKTSIAKSVADALGRQFFRFSVGGLSDVSEIKGHRRTYIGAMPG 483 Query: 145 --------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVA 195 T+ + ++ E + L V+D Q P ++ Sbjct: 484 KLIQCLKATGTTNPVVLIDEIDKLGTGFRGDPASALLEVLDPGQNSTFRDYFLDVPVDIS 543 Query: 196 QV------------------RETAAYLTRFAKTRGVAI---VMVGHVTKDGSLAG-PKVL 233 +V R L+ + VAI +V +D L G P+ L Sbjct: 544 KVLFICTANELERIPGPLLDRMEVIRLSGYDLPEKVAIAEQYLVPKSMRDSGLLGVPETL 603 Query: 234 EHCIDCSVLL---------------DGDADSRFRTLRSHKNRFGAV------NELGVFAM 272 + ID L D +R L+ GA + + + Sbjct: 604 KLTIDAVRSLARWYAREAGVRNLAKYIDRITRKLALQVVAESEGATLTDKSSRKSNTWEI 663 Query: 273 TEQGLRE-VSNPSAIFLSRGDEVTSGSSVMVVWE----GTRPLLVEIQALV-----DHSM 322 TE L E V P ++ +++ G L +E Q++ + Sbjct: 664 TEDNLHEYVGKPVFTSDRLYEDGPLPHGIVMGLAYTSMGGSALYIETQSIRRGLDSEGKT 723 Query: 323 MANPRRVAVGL--EQNRLAILLAVLHRHGGLQ--------MADQDVFVNVVGGV-KVTET 371 G + + + +A L D+ ++V G Sbjct: 724 RGGGTLKVTGQLGDVMKESTQIASTVARARLSDIKPESNFFDINDIHMHVPEGATPKDGP 783 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA + ++ +M+S DRP+ DL + GEV L G++ V +E+I A + G + I+PA Sbjct: 784 SAGVTMVTSMLSLALDRPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGARRAGIKCVILPA 843 Query: 432 AN------VPKKAPEGMQIFGVKKLSDALSVFD 458 AN +P E +++ V Sbjct: 844 ANKRDYDEIPDYLKEDLEVHYADTFDKVYEVAF 876 >UniRef50_A8SNF0 ATP-dependent protease La n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=A8SNF0_9FIRM Length = 782 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 67/431 (15%), Positives = 152/431 (35%), Gaps = 71/431 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPTDNL 151 GS I + G PG GK+++ L ++ ++ + G ++ +P L Sbjct: 355 KGSIICLVGPPGVGKTSIAKSIAKSLNREFVSMRLGGLHDESEIRGHRRTYVGAMPGKIL 414 Query: 152 NMLSE-------TSIEQICLI-----AEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 +L + +++I + + L V+D Q + + P +++V Sbjct: 415 TLLEQCKVNNPVMLLDEIDKVSNDFRGDPSSALLEVLDPEQNNKFTDNYINIPFDLSKVM 474 Query: 198 -----------------RETAAYLTRFA---KTRGVAIVMVGH----------VTKDGSL 227 R ++ + K + + + H +TK Sbjct: 475 FITTANTTSTIPSPLLDRMEIIPVSSYTYDEKEK----IAINHLIPKAFKNFSMTKKMLD 530 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGA----VNELGVFAMTEQGLREVSNP 283 + + I G + R + R A E + + L + Sbjct: 531 IKAEAVRDIIRYYTRESGVRNLE-RMIEKI-IRKAAVILVSKERKKVTVNSKNLVDFLGK 588 Query: 284 SAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG--LEQNRLAI 340 + E G + W L+ I+ + + +G ++++ + Sbjct: 589 KKFQDDILEKEDKVGLVNGLAWTEVGGELLTIETDIVNGTGKIQLTGQLGDVMKESAMTA 648 Query: 341 LLAVLHRHGGLQMAD-----QDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 + V + + + +D+ ++V G V SA + + A+VS+L +R + + Sbjct: 649 ISFVRSKADKFNIKEDFYKEKDIHIHVPEGAVPKDGPSAGITMTTAIVSALTNRKVNRQF 708 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVK 448 + GEV L G + + +E+I A ++G + I+P N +P++ E ++I+ V Sbjct: 709 AMTGEVTLRGRVLAIGGLKEKILAANRYGIKNIIIPKENEVDIDEIPQEIRETLKIYTVS 768 Query: 449 KLSDALSVFDD 459 + + L + + Sbjct: 769 DVCEVLDLVLE 779 >UniRef50_Q9XW87 Protein Y75B8A.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q9XW87_CAEEL Length = 773 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 70/443 (15%), Positives = 142/443 (32%), Gaps = 80/443 (18%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR-----AHRLGLP 147 V G + G PG GK+++ + ++ + + + G + A G Sbjct: 327 VKGMILCFTGPPGIGKTSIAKAIAESMGRKFQRVSLGGIRDESDIRGHRRTYVAAMPGRI 386 Query: 148 TDNL---------NMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV 197 + L +L E L ++D Q + P V+++ Sbjct: 387 IEALKTCKTNNPVFLLDEVDKLYSGNQGSPSAALLELLDPEQNSTFHDHYLNIPFDVSKI 446 Query: 198 ------------------RETAAYLTRFAKTRGVAI----VMVGHVTK----------DG 225 R ++ ++ V I ++ +TK + Sbjct: 447 MFIATANDIDRLEPALRDRLEIIEMSGYSLKEKVKICENHLLTRQLTKHCISHDYVKLER 506 Query: 226 SLAGPKVLEH-CIDCSVLLDGD-----ADSRFRTLRSHKNRFG----AVNELGVFAMTEQ 275 + E+ L+ + + R + + G V EL + ++ Sbjct: 507 QAIVAMIEEYTMEAGVRQLERNVGAICRNVALRLAEALNSDPGADVLPVMELPI-QISAS 565 Query: 276 GLREVSNPSAI----FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAV 331 + ++ + + + + +G + ++ I+A + V Sbjct: 566 NIHKILKNKHMKRVKIVEKMRPLPAGVCFGLSVTTIGGRVMPIEASKSK---GTGKIVTT 622 Query: 332 GLEQNRLAILLAVLH-------RHGGL-QMADQDVFVNVVGG-VKVTETSADLALLLAMV 382 G L + V GL + DQD+ V++ G V SA L A+V Sbjct: 623 GHLGKVLKESILVAKGWLSANSERLGLGTLEDQDIHVHLPAGAVNKDGPSAGTGLACALV 682 Query: 383 SSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEG- 441 S + PL D V GE+ L G + P+ +E++ A + G RR ++P +N + Sbjct: 683 SLATNIPLRSDAAVTGEISLTGHVLPIGGVKEKVLAAQREGLRRVVLPKSNEEEYLKMDE 742 Query: 442 -----MQIFGVKKLSDALSVFDD 459 M + + + D + D Sbjct: 743 DIRLEMDVVLAETIEDVIGAMMD 765 >UniRef50_C9RQZ9 ATP-dependent protease La n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQZ9_FIBSS Length = 789 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 67/425 (15%), Positives = 140/425 (32%), Gaps = 64/425 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR--------------AH 142 + + G PG GK+TL+ + + + + G ++ A Sbjct: 350 ILCLVGPPGVGKTTLVESIATAMQRNFVRITLGGVRDEAEIRGHRRTYIGAMPGRFIHAL 409 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAA 202 R + + +L E + L V+D Q D G + Sbjct: 410 RRAKCMNPVILLDEIDKMASDFRGDPASAMLEVLDPEQNHDFTDHFMEVG--LDLSRVLF 467 Query: 203 --------YLTRFAKTRGVAIVMVGHVTKD-----GSLAGPKVLEH-------------- 235 + + R + + G+ + G P++ E Sbjct: 468 IATANSEGEIPEALRDRMEVVRLPGYYPHEKLQIAGKYLLPRICERTGVKLGEQVSFSDE 527 Query: 236 CIDCSVLLDGDADSRF---RTLR-SHKNRFGA--VNELGVFAMTEQGLREVSNPSAIFLS 289 I+ + R L + ++R + + +T + L++ + Sbjct: 528 MINAVMRGWTREAGVRELERVLESAVRHRAKDIVMGKKIKPEVTAKVLQDYLGAPRFLDN 587 Query: 290 RGDEV-TSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 + E G + W G L +E L + ++ ++++ + V Sbjct: 588 QLPEPGRPGVVTGLAWTSVGGEILPIECMLLSGKGQLILTGKLGDVMKESAQIAVSLVRE 647 Query: 347 R--HGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 R G+ + D+ ++V G V SA +AL L ++S+ +P+ D+ GEV Sbjct: 648 RLQRFGIDPAIVRKTDIHIHVPEGAVPKDGPSAGIALTLCLLSAFTKQPISPDIAFTGEV 707 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G P+ E+ A G + +P N +P+ A +G++I+ K + + + Sbjct: 708 SLTGACLPIGGLNEKALAALAAGVKTLRLPEGNKKDVAELPEPAKKGLKIYTHKHIDEIV 767 Query: 455 SVFDD 459 + Sbjct: 768 KILFK 772 >UniRef50_C0EJ55 ATP-dependent protease La n=4 Tax=Clostridiales RepID=C0EJ55_9CLOT Length = 834 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 74/427 (17%), Positives = 131/427 (30%), Gaps = 69/427 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G I G PG GK+++ L ++ + + G + Sbjct: 381 KGQIICFVGPPGVGKTSVAKSIATALGRKYVRIALGGISDESDIRGHRKTYIGAMPGRII 440 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV------------------ 181 + L +L E + L V+D Q Sbjct: 441 TAIKQAKSRNPLILLDEIDKMGSSFKGDPSSAMLEVLDGEQNSTFVDHYVEIPFDLSDCL 500 Query: 182 -MHMADVQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 + A+ S+ R L K ++ K G A Sbjct: 501 FVTTANTLSTIPDPLLDRMEVIELSSYTLEEKFNICKKY----LIPKQRKKHGLTAKQIK 556 Query: 233 LEHCIDCSVLLDGDADSRFRTLRSH-------KNRFGAVNELGVFAMTEQGLREVSNPSA 285 + +++ +S R L + A NE+ T + L + P Sbjct: 557 ISDDAIYALIDSYTRESGVRKLERIVATLCRKTAKLLAENEIESVRFTAKNLEKHLGPKK 616 Query: 286 IFLSR-GDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMM-----ANPRRVAVGLEQNRLA 339 R D G + W L++I+A V N V L+ Sbjct: 617 YLGERIADSDQVGLVNGLAWTSVGGELLQIEASVMDGKGQLQLTGNLGNVMKESANTALS 676 Query: 340 ILLAVLHRHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLV 395 + +V ++ G+ +D+ ++V G V SA +AL +VS+L P+ +D+ Sbjct: 677 YVRSVATQY-GIDPGFYQQKDIHIHVPEGAVPKDGPSAGVALATVLVSALSGIPIRRDVA 735 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKK 449 + GE+ L G P+ +E+ A K G + ++P N + + K Sbjct: 736 MTGEITLRGRDLPIGGLKEKAIAAFKSGVKTVLIPDENKSDLEEIDSAVRDSLTFIPCKT 795 Query: 450 LSDALSV 456 + LSV Sbjct: 796 AEEVLSV 802 >UniRef50_Q7KUT2 Lon protease homolog n=10 Tax=Coelomata RepID=Q7KUT2_DROME Length = 1024 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 143/439 (32%), Gaps = 72/439 (16%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPT 148 G G + G PG GK+++ L ++ V G + ++ +P Sbjct: 553 GSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPG 612 Query: 149 DNLNMLSETSIEQICLIAEEE------------QPKLMVIDSIQ-VMHMADVQSSPGSVA 195 + L +T IE ++ +E L ++D Q + P ++ Sbjct: 613 KLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALLELLDPEQNANFLDHYLDVPVDLS 672 Query: 196 QV-RETAAYLTRF----AKTRGVAIVMVGHVTKDG-SLAGPKVL-----------EHC-- 236 +V A + + R I M G+V ++ ++A ++ +H Sbjct: 673 RVLFICTANVIDTIPEPLRDRMELIEMSGYVAEEKIAIARQYLMPQAMKDCGLTDKHINI 732 Query: 237 ---IDCSVLLDGDADSRFRTLR------SHKNRFGAVNELGV-FAMTEQGLREVSNPSAI 286 ++ +S R L+ K F V + G F + L I Sbjct: 733 SEDALNMLIRSYCRESGVRNLQKHIEKVIRKVAFRVVKKEGEHFPVNADNLTTFLG-KQI 791 Query: 287 FLSRG--DEVTSGSSVMVVWE--GTRPLLVEI------QALVDHSMMANPRRVAVG---- 332 F S G + + W G L +E Q G Sbjct: 792 FSSDRMYATTPVGVVMGLAWTAMGGSSLYIETSRRHIRQGAKTDPNTVAGSLHITGNLGD 851 Query: 333 LEQNRLAILLAVLHRHG------GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSL 385 + + I L V L + + + ++V G SA + ++ A+VS Sbjct: 852 VMKESAQIALTVARNFLYSLEPNNLFLEQEHIHLHVPEGATPKDGPSAGITIITALVSLA 911 Query: 386 RDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAP 439 +P+ QD+ + GEV L G++ PV +E+ A + G I+P N Sbjct: 912 TGKPVRQDIAMTGEVSLKGKVLPVGGIKEKTIAARRSGVNCLILPVDNKKDFEELPTYIT 971 Query: 440 EGMQIFGVKKLSDALSVFD 458 +G+++ D + Sbjct: 972 DGLEVHFATTYEDVYKIAF 990 >UniRef50_C4Z1T4 ATP-dependent protease La n=25 Tax=Bacteria RepID=C4Z1T4_EUBE2 Length = 784 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 59/439 (13%), Positives = 137/439 (31%), Gaps = 87/439 (19%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLA-----------------QQMKTLYVTGEESLQQVAM 139 I + G PG GK+++ L + + Y+ ++ Sbjct: 348 VICLAGPPGTGKTSIARSVAKALGKEYVRICLGGVRDEAEIRGHRKTYIGAM--PGRIIE 405 Query: 140 RAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 G+ + L +L E + L V+DS Q + + P ++ V Sbjct: 406 GLKSAGVN-NPLMLLDEIDKISSDYKGDTSAALLEVLDSEQNVNFVDHYIEMPVDLSNVL 464 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLA---- 228 R + AK ++ + ++G L Sbjct: 465 FIATANDLSNISRPLLDRMEIIEVGSYTANEKFHIAKEH----LIKKQIKENGLLVSDVK 520 Query: 229 -GPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFA--------------MT 273 KV+ I+ G + + + + + GVF ++ Sbjct: 521 FTDKVIRTIINSYTREAGVRGLERQIAKIVRKAVRELYKAGVFTSDGTRDKTVKKTVNIS 580 Query: 274 EQGLREVSNPSAIFLSRGD---EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVA 330 ++ + + + + EV + G L +E+ + + Sbjct: 581 DKNITDYLGKVKYRPDKKNTKGEVGIVRGLAWTQAGGDTLEIEVITMPGKGEFKLTGNMG 640 Query: 331 VGLEQNR---LAILLAVLHR-HGGLQ---MADQDVFVNVVGGV-KVTETSADLALLLAMV 382 ++++ ++ + +V + + + +++ G SA + + A++ Sbjct: 641 DVMKESASIAVSYIRSVTEKGRYKVDAEYFQNHAFHLHIPEGATPKDGPSAGITMATAVL 700 Query: 383 SSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------ 436 S++ P+ D+ + GE+ L G++ P+ +E++ + G VP N Sbjct: 701 SAVTGIPVRADVAMTGELTLRGKVLPIGGLKEKLLASKTAGITNVFVPRDNRSDVEELDT 760 Query: 437 KAPEGMQIFGVKKLSDALS 455 + EGM I V + + Sbjct: 761 EITEGMNIIYVNNAIEVFA 779 >UniRef50_UPI00006CFDB8 ATP-dependent protease La family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CFDB8 Length = 829 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 68/457 (14%), Positives = 141/457 (30%), Gaps = 102/457 (22%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPT 148 G+ I + G PG GK++L L ++ + + + G +V G+ Sbjct: 361 KGTIICLCGPPGVGKTSLGKSIADSLGRKFERISLGGVRDEAEVRGHRRTYVGALPGVII 420 Query: 149 DNL---------NMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 L +L E + L V+D Q + P ++ V Sbjct: 421 QALRKCQSKNPVILLDEIDKINRDYRGDPSSALLEVLDPNQNSTFTDHYLALPFDLSNVM 480 Query: 198 -----------------RETAAYL--------TRFAKTRGVAI----------------- 215 R + A + Sbjct: 481 FIATANQLDTIQGPLLDRMEVIQIPGYTLDEKKDIAHKYLIPKQIEENGINQSIIDLDKE 540 Query: 216 ---VMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAM 272 +++ T++ AG + LE I S + +SHK++ + E + Sbjct: 541 SVDLIIKAYTRE---AGVRQLERNIGSVCRSVAVKYSTHK--QSHKDKPN-LPEFQKVKI 594 Query: 273 TEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE----GTRPLLVEIQALVDHSMMANPRR 328 T +R+V + + + V G + L++E + + Sbjct: 595 TPDYVRDVLGIEIYDEEEIKDRINSPGIAVGMAYTAVGGKTLIIE-----ASMSQGSGKI 649 Query: 329 VAVGL--EQNRLAILLAV------------LHRHGGLQ-----MADQDVFVNVVGGV-KV 368 G + + ++ A+ + + + + D+ V+ Sbjct: 650 NLTGQLGDVMKESVQTAIGWIKSNWQNIQFMMKDPDIFKAEKLFDNIDIHVHFPAAATPK 709 Query: 369 TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAI 428 SA + + A++S L R + D+ + GE+ L G + PV +E++ A +G + I Sbjct: 710 DGPSAGITITTALLSLLSMRKIRSDIAMTGEITLKGLVLPVGGIKEKVLAAYANGIKTII 769 Query: 429 VPAANVPK------KAPEGMQIFGVKKLSDALSVFDD 459 +P N + + + VK + + L + D Sbjct: 770 LPYKNRKDTEDITPEIKKNIDFKFVKNIFEVLDIAFD 806 >UniRef50_C3YBR1 Lon protease homolog n=2 Tax=Eumetazoa RepID=C3YBR1_BRAFL Length = 997 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 138/433 (31%), Gaps = 65/433 (15%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPT 148 G V G + G PG GK+++ L+++ V G + ++ +P Sbjct: 564 GSVQGKILCFYGPPGVGKTSIARSIARALSREYFRFSVGGMTDVAEIKGHRRTYVGAMPG 623 Query: 149 DNLNMLSETSIEQICLIAEEE------------QPKLMVIDSIQV--------------- 181 + L +T E ++ +E L ++D Q Sbjct: 624 KVIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVSVDLS 683 Query: 182 ----MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAI---VMV------GHVTKDGSLA 228 + A++ + + R ++ + +AI +V V+++ Sbjct: 684 KVLFICTANIIDTIPEPLRDRMEMIDVSGYVAQEKLAIAEKYLVPKARLDAGVSEEKVSL 743 Query: 229 GPKVLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 + I G + + R + + V M E V P Sbjct: 744 DEDAISALIKSYCRESGVRNLEKQIQKVFRKAAYKLVNGDAEHVTVMAENLQDYVGKPIF 803 Query: 286 IFLSRGDEVTSGSSVMVVWE---GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILL 342 G + + W G+ + L S G + + Sbjct: 804 TSERMYANTPPGVVMGLAWTSLGGSTLYIETSLRLPRDSEFKEGSLELTGQLGDVMKESG 863 Query: 343 AVLHRHGGLQMADQD----------VFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLP 391 + + + ++D + ++V G SA ++ A++S +P+ Sbjct: 864 KIAYTFAKSFLTEKDPDNNFLSTSHLHLHVPEGATPKDGPSAGCTIVTALLSLAVGKPIR 923 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIF 445 Q++ + GE+ L G++ PV +E+ A + G I+PA N +P EG+++ Sbjct: 924 QNVAMTGELSLTGKVLPVGGIKEKTIAARRAGVDCIILPAENRKDFSDLPGFITEGLEVH 983 Query: 446 GVKKLSDALSVFD 458 V+ D + Sbjct: 984 FVEHYKDIYGIVF 996 >UniRef50_Q2NJE3 ATP-dependent protease La n=4 Tax=Candidatus Phytoplasma RepID=Q2NJE3_AYWBP Length = 791 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 63/442 (14%), Positives = 142/442 (32%), Gaps = 95/442 (21%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNM 153 P + + + G PG GK++L L +Q + G + ++ + Sbjct: 366 PQNILCLVGPPGVGKTSLASSIAKALGRQFVRQSLGGLKEESEIRGHRRTYIGAMPGRIL 425 Query: 154 LSETS---------IEQICLIAEEEQPK-----LMVIDSIQVM-HMADVQSSPGSVAQV- 197 +++I + L V+D Q + M S P ++QV Sbjct: 426 AGIRDAKTVNPVFLLDEIDKLVTNYNFDPASALLEVLDPQQNINFMDHFLSEPFDLSQVL 485 Query: 198 -----------------RETAAY-----------------LTRFAKTRGVA--------- 214 R L + K G+ Sbjct: 486 FIATANYLDNVPEALKDRMEIIEVSSYTEKDKINIASKYLLKKQLKNHGITDTNLVIDND 545 Query: 215 --IVMVGHVTKD-GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFA 271 + ++ H TK+ G ++L ++ K E + Sbjct: 546 TILYLIRHYTKEAGVRELDRILAELAR----------------KTVKECLIKKKEQVI-- 587 Query: 272 MTEQGLREVSNPS---AIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRR 328 +T + + + + + +++ S + + + G L VE+ + + Sbjct: 588 ITTKNVTKYLGKEKYLNLLDEQKEKIGSTNGLAYTYFGGDLLPVEVTYYKGKGQLVLTGK 647 Query: 329 VAVGLEQNRLAILLAVLH--RHGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMV 382 + L+++ L + ++ G+ A+ D +++ + SA + + ++V Sbjct: 648 LGEVLKESAYTALSFIKANCQNLGIDANIFAENDFHIHLPEAAIPKDGPSAGITIATSLV 707 Query: 383 SSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPK 436 S++ + + + L + GE+ L G I + +E+ A + G +P N +P+ Sbjct: 708 SAITQKYIKKGLGMTGEITLRGNILAIGGLKEKAIAANRSGLDTIFIPQENLKDIEDIPE 767 Query: 437 KAPEGMQIFGVKKLSDALSVFD 458 + + I V +SD S Sbjct: 768 EVRNKLNIIPVSNISDVFSQVF 789 >UniRef50_B2RII6 ATP-dependent protease La n=52 Tax=Bacteria RepID=B2RII6_PORG3 Length = 845 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 63/427 (14%), Positives = 133/427 (31%), Gaps = 64/427 (14%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------ 144 G + I + G PG GK++L L ++ + + G ++ Sbjct: 382 GDMKSPIICLYGPPGVGKTSLGKSIAESLGRKYVRISLGGLHDEAEIRGHRRTYIGAMCG 441 Query: 145 --------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV--------------- 181 ++ + +L E + L V+D Q Sbjct: 442 RIIQSLQRAGTSNPVFVLDEIDKIDSDYKGDPSSALLEVLDPEQNNAFHDNYLDIDFDLS 501 Query: 182 ----MHMADVQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAG 229 + A+ SS R + A + +V H + + Sbjct: 502 HVLFIATANSLSSISRPLLDRMELIDVSGYIIEEKVEIAARHLIPKQLVEHGFRKNDIKF 561 Query: 230 P-KVLEHCIDCSVLLDGDADSRFRTLRSHK--NRFGAVNELGVFAMTEQGLRE-VSNPSA 285 K +E ID G + + + A+N + + L + P Sbjct: 562 SKKTIEKLIDDYTRESGVRTLEKQIAAVIRKITKEAAMNVVHTTKVEPSDLVTFLGAPRY 621 Query: 286 IFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGL--EQNRLAILLA 343 +G + + W ++ I+ P+ G + + + ++A Sbjct: 622 TRDRYQGNGDAGVVIGLAWTSVGGEILFIE--TSLHRGREPKLTLTGNLGDVMKESAVIA 679 Query: 344 VLHRHGGLQ--------MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDL 394 + + + V V+V G + SA + ++ ++VS+L R + + Sbjct: 680 LDYIRAHSDELGISQEIFNNWQVHVHVPEGAIPKDGPSAGITMVTSLVSALTRRKVRAGI 739 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP------KKAPEGMQIFGVK 448 + GE+ L G++ PV +E+I A + G I+ N +G++ V Sbjct: 740 AMTGEITLRGKVLPVGGIKEKILAAKRSGITEIILCEENRKDIEEINDIYLKGLKFHYVS 799 Query: 449 KLSDALS 455 +++ L Sbjct: 800 NINEVLK 806 >UniRef50_P36776 Lon protease homolog, mitochondrial n=33 Tax=Coelomata RepID=LONM_HUMAN Length = 959 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 75/436 (17%), Positives = 141/436 (32%), Gaps = 68/436 (15%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPT 148 G G + G PG GK+++ L ++ V G + ++ +P Sbjct: 512 GSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPG 571 Query: 149 DNLNMLSETSIEQICLIAEEE------------QPKLMVIDSIQ-VMHMADVQSSPGSVA 195 + L +T E ++ +E L ++D Q + P ++ Sbjct: 572 KIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDLS 631 Query: 196 QV-RETAAYLTRF----AKTRGVAIVMVGHVTKDGSLAGPKVL----------------- 233 +V A +T + R I + G+V ++ + L Sbjct: 632 KVLFICTANVTDTIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARALCGLDESKAKL 691 Query: 234 EHCIDCSVLLDGDADSRFRTLR--SHK-NRFGA----VNELGVFAMTEQGLREVSNPSAI 286 + ++ +S R L+ K R A E +T + L++ Sbjct: 692 SSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSGEAESVEVTPENLQDFVGKPVF 751 Query: 287 FLSRG-DEVTSGSSVMVVWE--GTRPLLVEI------------QALVDHSMMANPRRVAV 331 + R D G + + W G L VE + V Sbjct: 752 TVERMYDVTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMK 811 Query: 332 GLEQNRLAILLAVLHRHGGLQ--MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDR 388 + A L +H + + ++V G SA ++ A++S R Sbjct: 812 ESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGR 871 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGM 442 P+ Q+L + GEV L G+I PV +E+ A + G ++PA N EG+ Sbjct: 872 PVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGL 931 Query: 443 QIFGVKKLSDALSVFD 458 ++ V+ + + Sbjct: 932 EVHFVEHYREIFDIAF 947 >UniRef50_B3KXS5 Lon protease homolog n=22 Tax=cellular organisms RepID=B3KXS5_HUMAN Length = 923 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 75/436 (17%), Positives = 141/436 (32%), Gaps = 68/436 (15%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPT 148 G G + G PG GK+++ L ++ V G + ++ +P Sbjct: 476 GSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPG 535 Query: 149 DNLNMLSETSIEQICLIAEEE------------QPKLMVIDSIQ-VMHMADVQSSPGSVA 195 + L +T E ++ +E L ++D Q + P ++ Sbjct: 536 KIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDLS 595 Query: 196 QV-RETAAYLTRF----AKTRGVAIVMVGHVTKDGSLAGPKVL----------------- 233 +V A +T + R I + G+V ++ + L Sbjct: 596 KVLFICTANVTDTIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARALCGLDESKAKL 655 Query: 234 EHCIDCSVLLDGDADSRFRTLR--SHK-NRFGA----VNELGVFAMTEQGLREVSNPSAI 286 + ++ +S R L+ K R A E +T + L++ Sbjct: 656 SSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSGEAESVEVTPENLQDFVGKPVF 715 Query: 287 FLSRG-DEVTSGSSVMVVWE--GTRPLLVEI------------QALVDHSMMANPRRVAV 331 + R D G + + W G L VE + V Sbjct: 716 TVERMYDVTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMK 775 Query: 332 GLEQNRLAILLAVLHRHGGLQ--MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDR 388 + A L +H + + ++V G SA ++ A++S R Sbjct: 776 ESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGR 835 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGM 442 P+ Q+L + GEV L G+I PV +E+ A + G ++PA N EG+ Sbjct: 836 PVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGL 895 Query: 443 QIFGVKKLSDALSVFD 458 ++ V+ + + Sbjct: 896 EVHFVEHYREIFDIAF 911 >UniRef50_UPI00019062BC DNA repair protein RadA n=1 Tax=Rhizobium etli IE4771 RepID=UPI00019062BC Length = 188 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 66/141 (46%), Positives = 95/141 (67%) Query: 295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMA 354 + G++V EGTRP+LVE+QALV + + PRR VG + RL+++LAVL H G+++ Sbjct: 2 SPGAAVFAGMEGTRPVLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRLG 61 Query: 355 DQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQE 414 DV++NV GG +++E +ADLA+ A+VSSL LP D V FGEV L+G IRPV + Sbjct: 62 QHDVYLNVAGGYRISEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGAIRPVAHTAQ 121 Query: 415 RISEAAKHGFRRAIVPAANVP 435 R+ EA K GF A++P+A+ Sbjct: 122 RLKEAEKLGFSTALLPSASAE 142 >UniRef50_Q6MH16 ATP-dependent protease La n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH16_BDEBA Length = 831 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 76/454 (16%), Positives = 135/454 (29%), Gaps = 96/454 (21%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------- 140 G + + G PG GK++L L + + + G ++ Sbjct: 346 KGPILCLAGPPGVGKTSLARSIAESLNRPFARISLGGVRDEAEIRGHRKTYVGAMPGKIL 405 Query: 141 -AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 A R + L +L E + L V+D Q +++V Sbjct: 406 QALRKVDKGNPLVLLDEIDKMANDFRGDPAAAMLEVLDPEQNNNFQDHYLELEYDLSKVM 465 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKD-------- 224 R L AK V + H KD Sbjct: 466 FIATANSLHTIPRPLLDRMEIINLEGYIEQEKFHIAKNYLVPKQLENHGLKDYKVTIKDD 525 Query: 225 ---------GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFG------------- 262 AG + LE TL + K Sbjct: 526 TIRDVIRYYTREAGVRNLERQFANVARKVAKDIVMNETLENFKAEAKTDKKAVAAKKGAK 585 Query: 263 ----AVNELGVFAMTEQGLREVSNPSAI-FLSRGDEVTSGSSVMVVWEGTRPLLVEIQAL 317 + + + +T Q L E+ P F E G + + W L+ ++ Sbjct: 586 TAKTSTKKNEGYVVTPQKLVELLGPHKYKFGMIETENEIGLTNGMAWTEVGGDLLAVEVS 645 Query: 318 VDHSMMANPRRVAVGLEQNRLAILLAVLHRHG-------GLQ---MADQDVFVNVV-GGV 366 V + G + + A + GL ++ DV +++ G V Sbjct: 646 VVP---GKGKFTVTGQLGDVMKESCAAAMSYVRSRGPLFGLDKEYFSNIDVHIHLPEGAV 702 Query: 367 KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRR 426 SA +AL ++VS++ P+ + + + GEV L G + + +E+I A + G + Sbjct: 703 PKDGPSAGIALTTSIVSAIMKVPVKRTVAMTGEVSLRGRVMAIGGLKEKILAAHRGGIKL 762 Query: 427 AIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 I P N +PK + +++ V + L Sbjct: 763 IICPKENEKDLKDIPKDVMKDLKVILVDHVDQVL 796 >UniRef50_P42425 ATP-dependent protease La homolog n=146 Tax=Firmicutes RepID=LON2_BACSU Length = 552 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 77/516 (14%), Positives = 164/516 (31%), Gaps = 109/516 (21%) Query: 33 TITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGV 92 TI + + + +S + + + DI +E G K L G Sbjct: 35 TIDKESKKEMEQLRKMRAISLSEPLSEKVRPKSFKDIVGQE-----DGIKALKAALCG-- 87 Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQ------QMKTLYVT-------GEES------ 133 +++ G PG GK+ L + + + + ++V +E Sbjct: 88 PNPQHVIVYGPPGVGKTAAARLVLEEAKKHKQSPFKEQAVFVELDATTARFDERGIADPL 147 Query: 134 ----LQQVAMRAHRLG-------------------LPTDNLNMLSETSIEQICLIAEEEQ 170 + A +G L D + L + ++ + E+ + Sbjct: 148 IGSVHDPIYQGAGAMGQAGIPQPKQGAVTHAHGGVLFIDEIGELHPIQMNKMLKVLEDRK 207 Query: 171 PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAI--------------- 215 + +DS + + P + + + L + G Sbjct: 208 ---VFLDS--AYYSEENTQIPNHIHDIFQ--NGLPADFRLIGATTRMPNEIPPAIRSRCL 260 Query: 216 -VMVGHVTKD-----GSLAGPKVLEHCI----DCSVLLDGDADSRFRTLRSHKNRFGAVN 265 V + KD A K+ ++ D + ++ AV Sbjct: 261 EVFFRELEKDELKTVAKTAADKIEKNISEEGLDLLTSYTRNGREAVNMIQIAA--GMAVT 318 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSR----GDEVTSGSSVMVVWEG--------------- 306 E +T + + V + S + G E G + G Sbjct: 319 ENRK-DITIEDIEWVIHSSQLTPKHEQKIGVEPQVGIVNGLAVYGPNSGSLLEIEVSVTA 377 Query: 307 -TRPLLVEIQALVDHSMMANPRRVA--VGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363 + I + + + + + + + + +L VL R G++ +D D+ +N Sbjct: 378 AQDKGSINITGIAEEESIGSQSKSIRRKSMAKGSVENVLTVL-RTMGMKPSDYDIHINFP 436 Query: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423 GG+ + SA +A+ + S++ P+ + + GE+ L G ++P+ +I A + G Sbjct: 437 GGIPIDGPSAGIAMAAGIFSAIHKIPIDNTVAMTGEISLNGLVKPIGGVIPKIKAAKQSG 496 Query: 424 FRRAIVPAANVPKKAP--EGMQIFGVKKLSDALSVF 457 ++ I+P N +G++I VK + L Sbjct: 497 AKKVIIPYENQQAILKQIDGIEIIAVKTFQEVLDEI 532 >UniRef50_UPI000180C54F PREDICTED: similar to Lon n=1 Tax=Ciona intestinalis RepID=UPI000180C54F Length = 990 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 59/432 (13%), Positives = 133/432 (30%), Gaps = 67/432 (15%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPTDNLN 152 G + G PG GK+++ L ++ V G + ++ +P + Sbjct: 555 GKILCFHGPPGVGKTSIARSIARALNREYFRFSVGGMHDVAEIKGHRRTYVGAMPGKMIQ 614 Query: 153 MLSETSIEQICLIAEEE------------QPKLMVIDSIQV------------------- 181 L +T E ++ +E L ++D Q Sbjct: 615 CLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLDPEQNHNFLDHYLDVTVDLSKVLF 674 Query: 182 MHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAI---VMVGH------VTKDGSLAGPKV 232 + A+V + + R ++ + AI ++ + +D + + Sbjct: 675 ICTANVLDTIPDPLKDRMEMIQVSGYVAEEKTAIARKYLIPQTHEQCGLNEDKAFVEDEA 734 Query: 233 LEHCIDCSVLLDGDA------DSRFRTL-----------RSHKNRFGAVNELGVFAMTEQ 275 L+ I G + R R N+ + +G T Sbjct: 735 LDLLIKNYCRESGVRGLLQQIEKIHRKAAFKLVNEQSEDRVVVNQSNLEDFVGKPPFTSN 794 Query: 276 GLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQ 335 + +V+ P + + + + E +R + E + + Sbjct: 795 RMYDVTPPGVVMGLAWTAMGGSTLYIECCERSRRDVKEGGDVTVELTGRLGDVMKESARI 854 Query: 336 NRLAILLAVLHRH-GGLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQD 393 + + ++ ++V G SA ++ +++S ++P+ QD Sbjct: 855 ASTFARSFLARKKPENHFFDGANLHLHVPEGATPKDGPSAGCTMVTSLLSLALNQPIRQD 914 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP------KKAPEGMQIFGV 447 + + GE+ L G++ PV +E+ A + G I P N + G++ V Sbjct: 915 IAMTGELSLTGKVLPVGGIKEKTLAAKRAGVSCLIFPRENAKDFNDLAEYIKAGVETHFV 974 Query: 448 KKLSDALSVFDD 459 + S+ + Sbjct: 975 EHYSEVFEIAFG 986 >UniRef50_Q98Q49 HEAT SHOCK ATP-DEPENDENT PROTEASE n=2 Tax=Mycoplasma RepID=Q98Q49_MYCPU Length = 842 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 67/427 (15%), Positives = 141/427 (33%), Gaps = 68/427 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------GL 146 + + G PG GK++L + + ++ + + G + ++ G+ Sbjct: 416 ILALVGPPGTGKTSLAMAIAESINKEFVKISLGGVKDEAEIRGHRRTYVGAMPGKIIQGI 475 Query: 147 P----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD---------------- 186 ++ L +L E + L V+D Q H D Sbjct: 476 KKAGVSNPLILLDEIDKMASDYKGDPASAMLEVLDPEQNKHFQDHYLEHEYDLSKVMFLA 535 Query: 187 ----VQSSPGSVAQVRETAAYLTRF--------AKTRGVAIVM--VGHVTKDGSLAGPKV 232 + P + R L+ + AK + V+ K ++ +V Sbjct: 536 TANYYEDIPAPLLD-RVEIINLSSYTSLEKKAIAKNHLIKAVLRDSSLDEKYFQIS-DEV 593 Query: 233 LEHCIDCSVLLDGDADSRFRTL------RSHKNRFGAVNELGVFAMTEQGLREVSNPSAI 286 L+ I L G + R L K G + E + E+ + E+ Sbjct: 594 LDFIIKHYTLEAGVRGLK-RVLDKMARKIVVKLLEGKIKEDEEVKIDEKKVVELLGVIKY 652 Query: 287 ---FLSRGDEVTSGSSVMVVWEGTRPLLVEIQ---ALVDHSMMANPRRVAVGLEQNRLAI 340 + D++ S + + G L +E+ + + + V L+ Sbjct: 653 DDESNDKEDQIGSVNGLAYTSYGGSTLQIEVNIYPGKHSIELTGSLKDVMKESAITALSF 712 Query: 341 LLAVLHRHG--GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 + + + G + + ++V G SA + A++S+L + + + + Sbjct: 713 VRSNAEKIGIKDFDWENNSIHIHVPDGATPKDGPSAGVTFTTAIISALTKKKVSPLVGMT 772 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GE+ L G++ P+ +E+ A K G + +P N VP + E + VK+ Sbjct: 773 GEITLRGKVLPIGGLKEKSIAANKFGIKTVFIPYENKKNLVDVPDEVKEKIDYISVKEYW 832 Query: 452 DALSVFD 458 + + Sbjct: 833 EIYNHLF 839 >UniRef50_O64948 Lon protease homolog 1, mitochondrial n=39 Tax=cellular organisms RepID=LONH1_ARATH Length = 888 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 75/481 (15%), Positives = 140/481 (29%), Gaps = 119/481 (24%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPT 148 G + G PG GK++L L ++ L + G + + G Sbjct: 400 RGPVLCFVGPPGVGKTSLASSIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLI 459 Query: 149 DNL---------NMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 D L +L E + + L V+D Q + P +++V Sbjct: 460 DGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKSFNDHYLNVPYDLSKVV 519 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPKV 232 R L + A + V+ H L P Sbjct: 520 FVATANRVQPIPPPLLDRMELIELPGYTQEEKLKIAMRHLIPRVLDQHGLSSEFLKIP-- 577 Query: 233 LEHCIDCSVLLDGDADSRFRTLR------------------------------------- 255 E + + ++ R+L Sbjct: 578 -EAMVKNIIQ-RYTREAGVRSLERNLAALARAAAVMVAEHEQSLPLSKDVQKLTSPLLNG 635 Query: 256 -----------SHKNRFGAVNELGVFA------MTEQGLREVSNPSAIFLSRGDEVTSGS 298 G F + E L ++ P S + + + Sbjct: 636 RMAEGGEVEMEVIPMGVNDHEIGGTFQSPSALVVDETMLEKILGPPRFDDSEAADRVASA 695 Query: 299 SVMVVWE----GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQM- 353 V V G VE ++V M ++ ++++ L V R ++ Sbjct: 696 GVSVGLVWTTFGGEVQFVEATSMVGKGEMHLTGQLGDVIKESAQLALTWVRARASDFKLA 755 Query: 354 --------ADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAG 404 +D+ ++ G V SA + L+ A+VS + + D + GE+ L G Sbjct: 756 LAGDMNVLDGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKRVRADTAMTGEMTLRG 815 Query: 405 EIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 + PV +++I A ++G +R I+P N VP +++ K++ D L Sbjct: 816 LVLPVGGIKDKILAAHRYGIKRVILPQRNSKDLVEVPAAVLSSLEVILAKRMEDVLENAF 875 Query: 459 D 459 + Sbjct: 876 E 876 >UniRef50_B5CKS9 ATP-dependent protease La n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKS9_9FIRM Length = 755 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 67/430 (15%), Positives = 146/430 (33%), Gaps = 74/430 (17%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPTD 149 GS +L G PG GK+++ L ++ + + G ++ G + Sbjct: 335 GSILLFVGAPGTGKTSIGQSIARALGREYVRISLGGIRDEAEIRGHRRTYIGAMPGRIME 394 Query: 150 NLNMLSETS----IEQICLIAEEEQPK-----LMVIDSIQV-MHMADVQSSPGSVAQV-- 197 + ++ ++++ +A++ L V+D Q + P ++ V Sbjct: 395 GIKRSGVSNPVIVLDEVDKLAKDYGGDPASALLEVLDPEQNSTFTDHYMNVPYDLSNVLF 454 Query: 198 ----------------RETAAYLT--------RFAKTRGVAIVMVGH-VTKDGSLAGPKV 232 R + + A+ + + + K+ Sbjct: 455 VCTANSLDTIPEPLLNRMEVINFSGYTAVEKYQIARRHLLPKALDAMGIKKNALKVTDGA 514 Query: 233 LEHCIDCSVLLDGDADS--------RFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPS 284 + ID + G D R ++ KN E +T+ L + Sbjct: 515 IRRIIDEYTMESGVRDLKKLINTLCRTAAVQLVKN------EGTTLTVTKTNLEKYLGKK 568 Query: 285 AIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG----LEQNRLAI 340 + + V+ TR EI + + + + G + + + I Sbjct: 569 QLH-HERKLSSPEPGVVTGLAWTRAG-GEILFIESKLIPGKGKMIITGQLGDVMKESIQI 626 Query: 341 LLAVLH----RHGGLQMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLV 395 L+++ + + + D D+ ++V G V SA + L A+ S L + + + Sbjct: 627 ALSLVKSLYPKESKV-LDDHDLHIHVPAGAVPKDGPSAGITLTTALASLLTGKKVSPEYA 685 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVP------KKAPEGMQIFGVKK 449 + GEV L G + P+ E++ A + G + ++PA N + ++I VKK Sbjct: 686 MTGEVSLRGGVMPIGGLPEKLMAAQRAGITKVLIPADNEQDLDDVADEVKNKLEIIPVKK 745 Query: 450 LSDALSVFDD 459 +++ L + Sbjct: 746 VTEVLKLVLK 755 >UniRef50_A4S6Y4 Lon protease homolog n=4 Tax=cellular organisms RepID=A4S6Y4_OSTLU Length = 936 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 68/457 (14%), Positives = 136/457 (29%), Gaps = 74/457 (16%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L D+ L + G ++L G G I + G PG GK+++ L ++ Sbjct: 478 LEDVKDRILEFIAVG-----QLL--GTTQGKIITMVGPPGVGKTSIGQSIAKALGRKFYR 530 Query: 126 LYVTGEESLQQVAMRAHRL--GLPTDNLNMLSET-------SIEQICLIAE-----EEQP 171 V G + ++ +P + L T I++I + Sbjct: 531 FSVGGMSDVAEIKGHRRTYVGAMPGKLIQCLKSTGVCNPVVLIDEIDKLGRGYQGDPASA 590 Query: 172 KLMVIDSIQV-MHMADVQSSPGSVAQV-RETAAYLTRF----AKTRGVAIVMVGHVTKDG 225 L ++D Q + P +++V A + R + + G++T + Sbjct: 591 LLELLDPEQNGTFLDHYLDVPVDLSKVLFVCTANVLDTIPGPLLDRMEVVRLSGYITDEK 650 Query: 226 SLAGPKVLE--------------HCID--------------CSVLLDGDADSRFRTLRSH 257 LE D L + +R + Sbjct: 651 VQIARTYLEKAAREKSGLSDVDASITDAAMGKLIGDYCREAGVRNLQKHLEKVYRKIALK 710 Query: 258 KNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRG--DEVTSGSSVMVVWEGTRPLLVEIQ 315 R + +E + + F + D G + W + I+ Sbjct: 711 VARAKSADEKLDSIVVDVDDLVDYVGQPPFATDRIYDVTPPGVVTGLAWTAMGGSTLYIE 770 Query: 316 ALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD----------VFVNVVGG 365 S G + + + H + +D + V+V G Sbjct: 771 CTAIDSGDGKGALKTTGQLGDVMKESSTIAHTFTRGFLELKDPGNKYLADTSLHVHVPAG 830 Query: 366 V-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 SA + + +++S ++P+ +L + GE+ L G + P+ +E+ A + G Sbjct: 831 ATPKDGPSAGITITTSLLSLAMNKPVKPNLAMTGELTLTGRVLPIGGVKEKTIAARRSGV 890 Query: 425 RRAIVPAANVP------KKAPEGMQIFGVKKLSDALS 455 + I P N + EG+ V + Sbjct: 891 KTIIFPEGNKKDYDELSEDIREGLDAHFVSTYDEVYR 927 >UniRef50_A8Q0K7 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q0K7_MALGO Length = 987 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 71/439 (16%), Positives = 139/439 (31%), Gaps = 75/439 (17%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH----------- 142 G +L+ G PG GK+++ L + L + G ++ Sbjct: 522 KGPILLLVGPPGTGKTSIARSLAAALQRPFVRLSLGGVRDEAEIRGHRRTYVGALPGSIV 581 Query: 143 ---RLGLPTDNLNMLSETSI--EQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQ 196 R +D + +L E + + L V+D Q + P ++++ Sbjct: 582 ASLRKARASDCVMLLDELDKLSNGMGFHGDPTAAMLEVLDLEQNHTFKDHYLNVPVNLSR 641 Query: 197 V------------------RETAAYLTRFAKTRGVAI---------VMVGHVTKDGSLAG 229 V R ++ + VAI V V +T Sbjct: 642 VIFIATANSLDTIPEPLLDRVDTVHVAGYTYDEKVAIAQRHLLPKQVAVHGLTLSNVAMS 701 Query: 230 PKVLEHCIDCSVLLDGDADSRFRTLRSHK--------NRFGAVNELGVFAMTEQGLREVS 281 ++L G R + +R G+ +++ L + Sbjct: 702 HEILMTIAQSYTREAGVRTMERRIGDVVRAKAVEYAESRGGSATYTP--EISQADLLRIL 759 Query: 282 N-PSAIFLSRGDEVTSGSSVMVVWEGT--RPLLVEIQALVDHSMMANPRRVAVG-LEQNR 337 PS + G + + ++G+ +L A + A ++G + + Sbjct: 760 GAPSYEPEVADEVGVPGVATGMAYQGSGMGGILHIECAFLPPGTSALKLTGSLGDVIRES 819 Query: 338 LAILLAVLHRHG---------GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRD 387 + A + H + DV +++ G SA +A + A+VS Sbjct: 820 AELAFAWVKTHAFALGICADRDAEFPRNDVHLHMPSGATPKDGPSAGVAFVCALVSMYLR 879 Query: 388 RPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK-------KAPE 440 PL L + GE+ L G + PV +E++ A + G R+ I+P N + Sbjct: 880 VPLDTRLSMTGEITLRGHVTPVGGIKEKVLGAHRAGIRKMILPRRNAREYEDDVPASVKS 939 Query: 441 GMQIFGVKKLSDALSVFDD 459 + + V+ + D L Sbjct: 940 DIHVVYVRTIQDVLYAVFG 958 >UniRef50_O83536 ATP-dependent protease La n=4 Tax=Treponema RepID=LON_TREPA Length = 881 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 71/433 (16%), Positives = 139/433 (32%), Gaps = 73/433 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 GS IL+ G PG GK+++ + + V G ++ Sbjct: 432 KGSIILLVGPPGVGKTSVGKSIARAIHKPFFRFSVGGISDEAEIKGHRRTYIGALPGKVL 491 Query: 145 -GLPT----DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV- 197 GL + M+ E + L V+D Q P ++ + Sbjct: 492 QGLKIVKTKAPVFMIDEVDKIGSGARGDPAGALLEVLDPEQNTTFRDHYLDLPFDLSHIV 551 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDG-----SL 227 R L AK V + K+G Sbjct: 552 FVLTANSTDPIPRPLLDRAEIIRLSGYIDTEKVEIAKRHLVPKTL----EKNGLKRACVS 607 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 +VL H + G ++L + LG + ++ L + + Sbjct: 608 YRKEVLLHLVHSYARESGVRGLE-KSLDKLHRKLATEIVLGKRSFDDKCLMDEALIGTFL 666 Query: 288 -------LSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLA 339 D G++V + W G + ++A+ + +G + + + Sbjct: 667 GKPVFRDDMLKDANKVGTAVGLAWTGMGGDTLLVEAITIPGKASFKLTGQMGAVMKESAS 726 Query: 340 ILLAVLHRHGGLQ-------MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLP 391 I L+ L R+ Q + + +++ G SA + + + S L + + Sbjct: 727 IALSWLRRYSAQQRIASPNWFEKRAIHLHIPEGATPKDGPSAGITMTTTLFSLLTQQKVK 786 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIF 445 L + GE+ L G++ P+ +E+ A + G + I+P AN +P+ +GM Sbjct: 787 PRLAMTGELSLTGQVLPIGGLKEKTIAARRGGIKEIIMPKANVRDLDEIPEHVKKGMVFH 846 Query: 446 GVKKLSDALSVFD 458 V+ + + LS+ Sbjct: 847 LVESMEEVLSLAF 859 >UniRef50_B3S7Y4 Lon protease homolog n=1 Tax=Trichoplax adhaerens RepID=B3S7Y4_TRIAD Length = 943 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 67/437 (15%), Positives = 142/437 (32%), Gaps = 75/437 (17%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-------- 144 V G I G PG GK+++ L ++ V G ++ ++ Sbjct: 508 VHGKIICFVGPPGVGKTSIGKSIARALNREFFRFSVGGMTNVAEIKGHRRTYVGAMPGKV 567 Query: 145 ------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD------------ 186 ++ + ++ E + L V+D Q + D Sbjct: 568 IQCFKKTNTSNPVILIDEVDKISTSYRGDPSSALLEVLDPEQNVSFLDHYLDVPVDLSNV 627 Query: 187 --------VQSSPGSVAQVRETAAYLTRFAKTRGVAI----VMVGHVTKDGSLAGPKVLE 234 +++ PG Q R ++ + +AI ++ G L Sbjct: 628 LFICTANVLETIPG-PLQDRMEVINVSGYISNEKIAIAKRHLIPVAQNSCGIQDRNVSLS 686 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVS---NPSAIFLSR- 290 +++ +S R L+ K+ + + + G E++ N F+ + Sbjct: 687 EDAVRALVESYCRESGVRNLQ--KH-IEKIFRKAALKIVQ-GTDEITVDNNNLEDFVGQP 742 Query: 291 -------GDEVTSGSSVMVVWE--GTRPLLVEIQALV-----DHSMMANPRRVAVGLEQN 336 + G + + W G L +E + S +G Sbjct: 743 VFKSDKIYESTPPGVVMGLAWTALGGSTLYIETVSNTVYENDSKSQSGIELTGQLGDVMK 802 Query: 337 RLAILLAVLHRH--GGLQ-----MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDR 388 + + +H + + + ++V G SA + A++S D+ Sbjct: 803 ESSRIAYTYAKHFVSKIDEDNRLFSRAGIHLHVPEGATPKDGPSAGCTITTALISLAIDK 862 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGM 442 P+ Q+ + GE+ L G++ PV +E++ A + G ++PA N + EG+ Sbjct: 863 PVRQNFAMTGEISLTGKVLPVGGIKEKLIAARRAGVDCIVLPAGNNKEFKELHSSVTEGL 922 Query: 443 QIFGVKKLSDALSVFDD 459 I + +D +V + Sbjct: 923 DIHFAETYNDVYNVAFE 939 >UniRef50_D1BA81 ATP-dependent protease La n=2 Tax=Synergistaceae RepID=D1BA81_THEAS Length = 781 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 75/437 (17%), Positives = 140/437 (32%), Gaps = 66/437 (15%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH--- 142 R L G V + G PG GK++L L ++ + + G ++ Sbjct: 341 RKLAGNDVRAQVLCFVGPPGVGKTSLARSIARALNRKFVNMSLGGVRDEAEIRGHRRTYV 400 Query: 143 -----------RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSS 190 R+ + + +L E + L V+D Q Sbjct: 401 GALPGRIIQKMRVAGVKNPVMLLDEIDKIGADFRGDPSAALLEVLDPEQNHAFSDHFLEV 460 Query: 191 PGSVAQV------------------RETAAYLTRFAKTRGVAIV-------MVGH--VTK 223 P +++V R + + V I +V ++ Sbjct: 461 PFDLSRVMFITTANSHHTIPKPLLDRMELISIPGYVAEEKVHIASRHLWPRIVRENGLSD 520 Query: 224 DGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHK----NRFGAVNELGVFAM----TEQ 275 G LE I G + + + + R A F T Sbjct: 521 MGLKLSKGTLERIISDYTREAGVRNLDRQLSKIARKVACARVAAEESGASFEAPRITTAS 580 Query: 276 GLREVSNPSAIFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGL 333 ++ + P G+ V + W G LL+E A+ ++ + + Sbjct: 581 LVKYLGAPKGYDTVIPQGSAVGAVVGLAWTETGGDVLLLEAAAMAGKGKVSFTGNLGD-I 639 Query: 334 EQNRLAILLAVLHRHG------GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLR 386 Q + + L H ++ + D+ V+V G SA + L +A+ S++ Sbjct: 640 MQESVQAAVGFLRSHAQELRMDHVKWDEMDLHVHVPEGATPKDGPSAGVGLAVAICSAIL 699 Query: 387 DRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPE 440 P+ D+ V GE+ L G + PV +E+ A ++ R I+P AN +P A + Sbjct: 700 KVPVRTDMAVTGEITLRGAVLPVGGIREKCLAAKRNRIREMILPFANRADVEDMPDWARK 759 Query: 441 GMQIFGVKKLSDALSVF 457 G+ + +A + Sbjct: 760 GLTFHFISSAEEAFRLL 776 >UniRef50_C5LQP8 Lon protease homolog n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5LQP8_9ALVE Length = 955 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 74/494 (14%), Positives = 151/494 (30%), Gaps = 109/494 (22%) Query: 67 SDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTL 126 + + E G +R G PG + + G PG GK++L L ++ + Sbjct: 439 EEARVAEGEGRDVGLPVINR--RG--PPGPVVCLVGPPGVGKTSLCRSIAEALGKRFCRV 494 Query: 127 YVTGEESLQQVAMRAH-----RLGLPTDNLNMLSETS----IEQICLIAE------EEQP 171 + G ++ LG L +++I +A+ + Sbjct: 495 SLGGVRDEAEIRGHRRTYIGAMLGTVLQELARCGSRECVMLLDEIDKVAQPGFNSNAQAA 554 Query: 172 KLMVIDSIQ-VMHMADVQSSPGSVA-------------QVRETAAYL------------- 204 L ++D Q P ++ R L Sbjct: 555 LLELLDPSQHATFRDHYLGVPFDLSCVTFICTANSAGEMSRPLIDRLEMVELESYTLEEK 614 Query: 205 TRFAKTRGVAIVMVGHVTKDGSL-AGPKVLEHCIDCSVLLDGDADSRFRT--------LR 255 AK + + H GS +++ ++C G R + Sbjct: 615 REIAKRHLIPRQLEYHCLAPGSAKIEDDAIDYLVECYTKEAGVRSLERRLGDVCRYVAIE 674 Query: 256 SHKNRFGAVNELGVFAMTEQGLREVSNPSAIFL-----------SRGDEVTSGSSVMVVW 304 +N+ + + F + ++ + ++ P G ++ + Sbjct: 675 MVENKKDSPS---PFTIQQRDIPDILGPETFESPARLARRRARQQHSRGQQIGVALGLAV 731 Query: 305 EGTRPLLVEIQALVDHSM----MANPRRVAVG----LEQNRLAILLAVLHRHG------- 349 ++EI+ + S + G + Q ++ LA L Sbjct: 732 TAGGGDVLEIETTLTSSSASVGAGTGKVSITGQLGKVMQESVSAALAQLKARVYAVQDRA 791 Query: 350 ---GLQ--------------MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLP 391 G + DV V+ G V SA +A+ LA+VS P+P Sbjct: 792 MAEGTPSSMDSIFRLIEPKLLTSADVHVHFPAGAVPKDGPSAGVAVFLALVSLFAAIPVP 851 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQI 444 + GE+ L G++ PV ++++ A + G I+P +N +P + +++ Sbjct: 852 SSIATTGEITLTGQVLPVGGVRDKVLAAQRAGIDTVIIPRSNAKTLRASLPLSVTDSIEL 911 Query: 445 FGVKKLSDALSVFD 458 + + +AL Sbjct: 912 VFIDHVDEALLRVF 925 >UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borrelia RepID=LON2_BORBU Length = 813 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 65/459 (14%), Positives = 146/459 (31%), Gaps = 100/459 (21%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------ 140 V + + G PG GK++L+ L+++ + + G ++ Sbjct: 360 VKAPILCLVGPPGIGKTSLVESIARSLSREFVKISLGGLRDEAEIRGHRRTYVGSLPGVF 419 Query: 141 --AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV 197 A + ++ + +L E E L V+D Q + P ++ V Sbjct: 420 ISAMKRSGKSNPVILLDEIDKINSSYKGNPESALLEVLDPEQNYKFIDHYLEIPYDLSNV 479 Query: 198 ------------------RETAAYL--TRFAKTRGVA-IVMVGHVTKDG----------- 225 R + + + +A I ++ + K+ Sbjct: 480 LFVTTANSLNGMSKPLLDRMEIIKVEGYSYIEKLEIAKIFLIPSIIKESFLDKVYIRIED 539 Query: 226 ----SLAGPKVLEHCIDCSVLLDGDADSRFRTL-----------RSHKNRFGAVNELGVF 270 +L +E + L + R L + K F + + L Sbjct: 540 DVIFNLIRNYTMESGVRG---LKRVLTNLIRRLVRELLYEYSKDQIIKGNFYSPSSL--- 593 Query: 271 AMTEQGLREVSNP-------------------SAIFLSRGDEVTSGSSVMVVWEGTRPLL 311 + +P + L +SG + W + Sbjct: 594 -IHGNNSLFTHDPDIPGIYKIININNYYNYVDTEDNLDLIKIDSSGFVYGLAWTNYGGTV 652 Query: 312 VEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVLHRHG-GLQMADQD---VFVNVVGGV 366 + ++A ++G + + + +++ + L ++ + ++ G Sbjct: 653 LPVEATKFEKKGDIILTGSLGAIMKESAQLAYSIVKTYSSKLNFDVKESPEIHLHFPEGA 712 Query: 367 -KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425 SA + + A+ S L D+ +P DL + GEV L G + PV +E++ A ++G Sbjct: 713 TPKDGPSAGITIATAIASILSDKKVPLDLAMTGEVTLKGFVLPVGGIKEKVLAAYRNGIS 772 Query: 426 RAIVPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 + I+P N +P++ + + + V L + + Sbjct: 773 KVILPKDNKKDYSKLPEEVKDNIDVKFVSSLEEVFDYLN 811 >UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DA89_9PROT Length = 774 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 69/430 (16%), Positives = 149/430 (34%), Gaps = 74/430 (17%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL---------- 144 G+ + G PG GK++L L + + + + G E + ++ Sbjct: 345 GATLCFVGPPGVGKTSLANSIAKALDKNLVRIALGGLEDVNELRGHRRTYIGAMPGRIAQ 404 Query: 145 ----GLPTDNLNMLSETSIEQICL-IAEEEQPKLMVIDSIQV-----------------M 182 + + +L E I++I + L V+D Q + Sbjct: 405 GIINAKQMNPVIVLDE--IDKISRYRGDPTAVLLEVLDPEQNSHFRDLYLNFDLDLSKVL 462 Query: 183 HMADVQSSPGSVAQVRETAAYLT----------RFAKTRGVAIVMVGHVTKDGSLA-GPK 231 +A A +R+ + AK + M H K ++ Sbjct: 463 FIATANDPSTIPAPLRDRMEMIFVGSYTPQEKFEIAKRYLIPQEMKKHSLKKSEISITDA 522 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRS-HKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 L ID G + R + K + +T + L+E + Sbjct: 523 ALREIIDKYTKEAGVRNLRRIIAKIMRKAAIKILEGEKQVKVTLKNLKEFLEKPIFGIEE 582 Query: 291 GDEVT-SGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLA-------ILL 342 D+ G + W +++++A+ + + G + + L+ Sbjct: 583 IDKKDKIGVVNGLAWTPVGGDVLKVEAVK---YKGKGQVILTGQLGDVMKESAHIAFTLI 639 Query: 343 AVL--HRHGGLQ-------MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQ 392 VL ++ ++ +V ++V G + SA + + A+ S ++ + Sbjct: 640 KVLIDNKKLKVKERSKEPIYYKYNVHIHVPEGAIPKDGPSAGITMATAIASIFSEKKVHS 699 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQIF 445 D+ + GE+ L+G++ P+ +E++ A K ++ ++P N VP + EG++I Sbjct: 700 DVAMTGEITLSGDVLPIGGLKEKLIAAYKAKIKKVLIPQKNYEKDLDDVPNEVKEGLEIV 759 Query: 446 GVKKLSDALS 455 VK++ + L Sbjct: 760 PVKRIEEVLD 769 >UniRef50_C3X6V3 ATP-dependent protease La n=2 Tax=Oxalobacter formigenes RepID=C3X6V3_OXAFO Length = 815 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 69/422 (16%), Positives = 150/422 (35%), Gaps = 67/422 (15%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR--------------AH 142 + G PG GK++L ++ + + G ++ A Sbjct: 381 LLCFVGPPGVGKTSLGQSIARATGRKFVRVSMGGVHDEAEIRGHRRTYIGALPGNIIQAI 440 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV---- 197 R + + +L E + + L V+D Q + + P +++V Sbjct: 441 RRAGTNNCVMLLDEVDKLGSGVQGDPSAALLEVLDPAQNSTFRDNYLAVPFDLSKVMFIC 500 Query: 198 --------------RETAAYLTRFAK--TRGVAI--VMVGHVTKDG---------SLAGP 230 R L + + +A+ ++ ++G A Sbjct: 501 TANMPDTIPGPLRDRLEMIQLPGYTEQEKTQIALRYLIRRQREENGLKPENCEITENAIH 560 Query: 231 KVLEHCID--CSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSN-PSAIF 287 ++ H L+ + S FR + K G+ ++ V + ++ P Sbjct: 561 DIIGHYTREAGVRNLEREIGSVFRNA-AMKIAEGSAEKVTV---DSADIPDILGAPIYEG 616 Query: 288 LSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 G + + W G L +E + + + ++ + ++ A L V Sbjct: 617 EIAMRSSMPGIATGLAWTPVGGDILFIEASRVPGRNKLTLTGQLGEVMRESAQAALTLVK 676 Query: 346 HRHGGLQ-----MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 R L+ + ++ V+V G + SA +A+ LA+ S + ++P+ D + GE Sbjct: 677 ARAVDLKINPELFENSEIHVHVPAGAIPKDGPSAGVAMFLALASVMMNKPVASDHAMTGE 736 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + L G + PV +E++ A + G + ++PA N +P++A +Q ++ + DA Sbjct: 737 ISLRGLVLPVGGIKEKVLAALRAGIKTVMLPARNKRDLDDIPEEARNQLQFVFLETVDDA 796 Query: 454 LS 455 + Sbjct: 797 IR 798 >UniRef50_B3ERM8 ATP-dependent protease La n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERM8_AMOA5 Length = 827 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 62/428 (14%), Positives = 140/428 (32%), Gaps = 72/428 (16%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + + G PG GK++L L ++ + + G ++ Sbjct: 376 KGPILCLYGPPGVGKTSLGKSIAKALNRKYVKVSLGGLHDEAEIRGHRKTYVGAMPGRII 435 Query: 145 -GLP----TDNLNMLSETSIEQICLI-AEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV 197 G+ ++ + ML E +++I + + L V+D Q + P +++V Sbjct: 436 KGIQNSGSSNPVFMLDE--LDKITDLRGDPAAALLEVLDPEQNQAFVDTFLEVPYDLSKV 493 Query: 198 ------------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPK 231 R + + AK + ++G A Sbjct: 494 LFIATANQLDTIPPALRDRLEIIEINGYTIEEKLQIAKKY----LFPKQRKENGLKATDL 549 Query: 232 VLEHCIDCSVLLDGDADSRFRTL------RSHK-NRFGAVNELGVFAMTEQGLREVSNPS 284 + V+ +S R L K + + E + ++ + + Sbjct: 550 SIHDTAIVKVIESYTRESGVRELDRKLASLVRKVGKAMVLEEPYPKKIHKEDVISLLGI- 608 Query: 285 AIFLSR--GDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAIL 341 +F G ++ + W ++ I+A++ +G + + Sbjct: 609 ELFDQEMYQQTHLPGVAIGLAWTPVGGDILFIEAILSAGKGKLTLSGQLGDVMKESAMTA 668 Query: 342 LAVLHRH---GGLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDL 394 L + G+ D+ +++ G V SA + L A+ S R + + Sbjct: 669 FTYLKANTNLLGIPDKVFESYDLHIHLPAGAVPKDGPSAGITLFAALASLYTQRKVKDKV 728 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVK 448 + GE+ L G++ PV +E+I A + G + I+ N K + ++ V+ Sbjct: 729 AMTGEITLRGKVLPVGGIKEKILAAKRAGIKEVILSKENKKDIQEIKQKDIQDLKFHYVE 788 Query: 449 KLSDALSV 456 + + + + Sbjct: 789 FVEEVIQL 796 >UniRef50_C8VQK2 Mitochondrial ATP-dependent protease (Eurofung) n=3 Tax=Leotiomyceta RepID=C8VQK2_EMENI Length = 932 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 72/437 (16%), Positives = 142/437 (32%), Gaps = 80/437 (18%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR-----AHRLGLPTDNL 151 +L+ G PG GK++L L ++ + + G ++ A G+ + L Sbjct: 481 ILLLVGPPGTGKTSLARSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGVIVNGL 540 Query: 152 ---------NMLSETS-IEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV--- 197 +L E I + L V+D Q + + P +++V Sbjct: 541 KKVGVANPVFLLDEIDKIGGPNFQGDPSAAMLEVLDPEQNHTFVDHYINIPIDLSKVLFI 600 Query: 198 ---------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 R L AK ++ + +G G VL Sbjct: 601 ATANSLDTIPAPLLDRMETIQLSGYTTVEKRHIAKRH----LLPKQIRANGLSDGQVVLS 656 Query: 235 HCIDCSVLLDGDADSRFRTLRSH--------KNRFGAVNELGVFA-----MTEQGLREVS 281 + +S R L +F + +T L E+ Sbjct: 657 DDVIDKTTTSYTRESGVRNLERELGSICRYKAVQFADATDSAKLESYNPVVTVDDLEEIL 716 Query: 282 NPSAI---FLSRGDEVTSGSSVMVVWEGTRP--LLVEIQALVDHSMMANPRRVAVGLEQN 336 + + ++ G + L +E+ + + ++ L+++ Sbjct: 717 GIERFDEEIAEKHGRPGVVTGLVAYSTGGQGSILFIEVADMPGSGRVQLTGKLGDVLKES 776 Query: 337 RLAILLAVLHRHGGLQM---ADQDV------FVNVV-GGVKVTETSADLALLLAMVSSLR 386 L V L + ++D+ V+ G + SA LA + ++S Sbjct: 777 VEVALTWVKAHSFELGLTSDPNEDIMKNRSLHVHCPSGAIPKDGPSAGLAHTIGLISLFS 836 Query: 387 DRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPE 440 + +P L + GEV L G + PV +E++ A + G ++P N VP++ Sbjct: 837 GKAVPPKLAMTGEVSLRGRVMPVGGIKEKLIGALRAGVTTVLLPHQNRKDVKDVPEEVSN 896 Query: 441 GMQIFGVKKLSDALSVF 457 G++I VK + +A+ Sbjct: 897 GLEIIYVKHIWEAIRHI 913 >UniRef50_A8STA7 ATP-dependent protease La n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8STA7_9FIRM Length = 767 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 64/421 (15%), Positives = 140/421 (33%), Gaps = 63/421 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------ 144 I + G PG GK+++ ++ L + G ++ Sbjct: 345 IICLVGPPGTGKTSIARSIARATERKYIRLSLGGVRDEAEIRGHRKTYVGAMPGRIVQSM 404 Query: 145 --GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV---- 197 + L +L E + L V+DS Q P ++ V Sbjct: 405 IKAKVNNPLMLLDEIDKVGSDYKGDVSSALLEVLDSEQNNEFNDHYMGVPVDLSNVLFIA 464 Query: 198 --------------RETAAYLTRFA--KTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC-- 239 R ++ + + +A + + V K G ++ +D Sbjct: 465 TANDISTIPGPLLDRMEIIEISGYTENEKYNIAKLYL--VDKTRERNGLTKIQFKMDAGA 522 Query: 240 --SVLLDGDADSRFRTLR--SHK-----NRFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290 ++ ++ R L K R E+ +T++ +++ P + Sbjct: 523 IRDIIRHYTREAGVRNLERNIDKVCRKACRKILAGEIETAKITKKNIQDYIGPYKYKDEK 582 Query: 291 GD-EVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNR---LAILLAV 344 + + G + W G L +E+ L + ++ ++++ ++ + ++ Sbjct: 583 NNLKDRVGVVTGLAWTAVGGVTLEIEVNVLPGSGAVQLTGKMGDVMKESAYAGMSYIRSL 642 Query: 345 LHRHG--GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 D +++ G V SA + + A+ S++ P+ + GE+ Sbjct: 643 KESAALGDDYFTKHDFHIHIPEGAVPKDGPSAGITMATALYSAIFSAPVDGKTAMTGEIT 702 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALS 455 L GE+ P+ +E++ A G +R ++PAAN G++I V K+ L Sbjct: 703 LRGEVLPIGGLKEKLLAAKLQGVKRVLIPAANESDYLQLDFDIVSGLEIHLVDKMRQVLD 762 Query: 456 V 456 Sbjct: 763 Y 763 >UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYM2_9FIRM Length = 684 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 85/433 (19%), Positives = 150/433 (34%), Gaps = 73/433 (16%) Query: 99 LIGGNPGAGKSTLLLQTLCKLAQQ------MKTLYVTGEESLQQVAMRAHR---LGLPTD 149 L+ G PG GK+T L + ++ +V + + + R LG D Sbjct: 206 LLYGPPGVGKTTAARIVLEAVKKEAHSPFAENAPFVETDGTTLRWDSRDMTNPLLGSVHD 265 Query: 150 NLNMLSETSI------EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAY 203 + + + E + E ++ ID I M + R Sbjct: 266 PIYQGARRDLADGGIPEPKPGMVTEAHGGILFIDEIGEMDEMLQNKLLKVLEDKRAFFES 325 Query: 204 ------------LTRFAKTRGVAI--VMVGHVTKDG----------------SLAGPKVL 233 R G V++G T+D PK + Sbjct: 326 AYYDHTDEKVPPYIRKLFEEGAPADFVLIGATTRDASHVNPALRSRCAEIYFEPLTPKHI 385 Query: 234 EHCIDC------------SVLLDGDADSRFR-TLRSHKNRFG----AVNELGVFAMTEQG 276 E + V L + + R + + + E +++ Sbjct: 386 EEIVQNAAKKLKVEVAEEVVRLISEYTTEGRKAINILADAYSLALSRTKEGEDVKISKGD 445 Query: 277 LREVSNPSAIFL----SRGDEVTSGSSVMVVWEGTRPLLVEIQALV--DHSMMANPRR-- 328 + EV+ S ++ + G + G ++EI+A+V R Sbjct: 446 IYEVAQVSRLYQFVTKKASKKPEVGHVFGLGVAGFLGSVIEIEAVVFPAEEKGKGQVRFN 505 Query: 329 -VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRD 387 A + ++ + +VL G + D DV +NV+GG + SA A+L A+VS++ + Sbjct: 506 ETAGSMAKDSVFNAASVLRHLTGKSIHDYDVHINVIGGGNIDGPSAGTAILAALVSAVTE 565 Query: 388 RPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--GMQIF 445 +PL QD+ V GE+ LAG +RPV E+ A + G R ++P N G+ I Sbjct: 566 KPLRQDVAVTGEISLAGRVRPVGGVFEKAYGAKQAGIRTLVIPKENDKDIPEGHLGLDIH 625 Query: 446 GVKKLSDALSVFD 458 V+ +A +V Sbjct: 626 AVETAEEAFAVLF 638 >UniRef50_Q02HT1 ATP-dependent protease La n=8 Tax=Proteobacteria RepID=Q02HT1_PSEAB Length = 799 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 76/456 (16%), Positives = 147/456 (32%), Gaps = 75/456 (16%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125 L DI L + G + G + GS +L+ G PG GK+++ L + Sbjct: 354 LDDIKDRILEFLAVGSFK-------GEIAGSIVLLVGPPGVGKTSIGKSIAESLGRPFYR 406 Query: 126 LYVTGEESLQQVAMRAHR-LGLP-------------TDNLNMLSETSIEQICLIAEEEQP 171 V G ++ +G + + ML E + Sbjct: 407 FSVGGMRDEAEIKGHRRTYIGALPGKLVQALKEVEVMNPVIMLDEIDKLGASYQGDPASA 466 Query: 172 KLMVIDSIQVMHMAD--------------------VQSSPGSVAQVRETAAYLTRFAKTR 211 L +D Q + D + S PG + R L+ + Sbjct: 467 LLETLDPEQNVEFLDHYLDLRLDLSKVLFVCTANTLDSIPGPLLD-RMEVIRLSGYISEE 525 Query: 212 GVAI----VMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLR----------SH 257 +AI + + K G G + +V+ ++ R L Sbjct: 526 KLAIAKRHLWPKQLEKAGVPKGRLSISDAALRAVIEGYAREAGVRQLEKQLGKLVRKSVV 585 Query: 258 KNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQAL 317 K +++ + + L + +F S G + W + I+A Sbjct: 586 KLLEDPESKV---KIGPRDLEDYLGMP-VFRSEQVLSGIGVITGLAWTSMGGATLPIEAT 641 Query: 318 VDHSM------MANPRRVAVGLEQNRLAILLAVLHRHGGLQ--MADQDVFVNVVGGV-KV 368 H++ V + + + + L ++GG V ++V G Sbjct: 642 RIHTLNRGFKLTGQLGDVMKESAEIAYSYIGSHLKKYGGDPTFFDQAFVHLHVPEGATPK 701 Query: 369 TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAI 428 SA + + A++S R++ + + + GE+ L G++ P+ +E++ A + I Sbjct: 702 DGPSAGVTMASALLSLARNQVPKKGVAMTGELTLTGQVLPIGGVREKVIAARRQKIFELI 761 Query: 429 VPAAN------VPKKAPEGMQIFGVKKLSDALSVFD 458 +P AN +P EG+ + K+ D V Sbjct: 762 LPEANRGHFEELPDYLKEGLTVHFAKRYGDVAKVLF 797 >UniRef50_C3XNB5 ATP-dependent protease La n=4 Tax=Campylobacterales RepID=C3XNB5_9HELI Length = 819 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 64/455 (14%), Positives = 143/455 (31%), Gaps = 89/455 (19%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G+ + G PG GK++L L +++ + + G E + ++ Sbjct: 365 KGTILCFYGPPGVGKTSLANSIATALKRKLVRIALGGLEDVSELRGHRRTYIGAMPGRIV 424 Query: 145 -----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV------------------ 181 + + +L E + + L ++D Q Sbjct: 425 QGLIDAKEMNPVIVLDEIDKIRNSFRGDPSSVLLEILDPEQNKEFRDYYTNFNLDLSQVI 484 Query: 182 -MHMADVQSSPGSVAQVRETAAYLT--------RFAKTRGVAIVMVGHVTKDGSLA-GPK 231 + A+ S+ + + R + + AK + + H + ++ Sbjct: 485 FVATANDISAIPAPLRDRMEFININSYTPDQKEQIAKKYLIPQELKKHGLQSSEISFNLP 544 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKN----------RFGAVNELGVFAMTEQGLREVS 281 ++ I+ G + R + + +T + L Sbjct: 545 AIKMLIEKYTREAGVRNLRRKIAEILRKVSKQILQNTEENTESKTQKKILITPKTLPNYL 604 Query: 282 NPSAI-FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAI 340 + F + G + W +++I+AL +G A Sbjct: 605 DKIVFEFENASKNAEVGLINGLAWTSVGGDVLKIEALKIKGKGGLQITGNLGDVMKESAK 664 Query: 341 L-------------LAVLHRHGGLQMADQ---------------DVFVNVVGGV-KVTET 371 + L V + L ++ D+ +++ G Sbjct: 665 IAYSYVKSLIDNGTLKVDSKLIPLTPKEKEEKLQPSVSEIYNRFDIHLHIPEGATPKDGP 724 Query: 372 SADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 SA +A+ A+ S L +R + D+ + GE+ L G++ P+ QE++ A K G + ++P Sbjct: 725 SAGIAIASALSSLLTNRKVRGDVAMTGELTLRGKVLPIGGLQEKLIAAYKSGMQEVLIPK 784 Query: 432 AN-------VPKKAPEGMQIFGVKKLSDALSVFDD 459 N +P++ G++I V + L++ Sbjct: 785 KNFERDLEEIPQEVKNGLKIRPVSDFKEVLAIILK 819 >UniRef50_D0LIP5 ATP-dependent protease La n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIP5_HALO1 Length = 803 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 68/422 (16%), Positives = 144/422 (34%), Gaps = 59/422 (13%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------- 140 G + + G PG GK++L L ++ + G ++ Sbjct: 347 QGPILCLVGPPGVGKTSLGRSVATALGRKYVRTALGGVRDEAEIRGHRRTYIGALPGRIA 406 Query: 141 -AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV- 197 A + + + +L E + L V+D Q +++V Sbjct: 407 GALKKAGAMNPVMVLDELDKLGSDHRGDPSSALLEVLDPEQNSTFSDHYLEIDLDLSRVM 466 Query: 198 -----------------RETAAYL--------TRFAKTRGVAIVMVGH-VTKDGSLAGPK 231 R + A+ + + H + +D + Sbjct: 467 FIATANQTETIPAPLLDRLEIIRIPGYTLEEKRVIARKHLLPKQIAEHGLGRDQLRVDDE 526 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRFG--AVNELGVFAMTEQGLREVSNPSAIFL- 288 L+ I G + ++ A + ++ + L +V P F Sbjct: 527 ALDELIGSYTREAGVRNLEREIAAVCRHAAVEVASASVSELSVDKSMLEDVLGPPNFFAE 586 Query: 289 --SRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH 346 +R EV + + G + VE +A+ + +V + ++ L V Sbjct: 587 MANRKAEVGVCAGLAWTPTGGQIQFVEARAMPGRGGLKLTGQVGDVMTESASTALSWVRA 646 Query: 347 RH--GGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV 400 G+ + + D+ +++ G V+ SA +A++ A++S +P+ DL + GEV Sbjct: 647 NAGTLGIDAKLLQNADIHLHLPSGAVRKDGPSAGVAIVTALMSLFTHKPVRSDLAITGEV 706 Query: 401 GLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDAL 454 L G + PV +E++ A + G +P N +P++ + + I VK+ + L Sbjct: 707 TLRGLVLPVGGIKEKVLAAHRGGIHTVFLPERNRKDLEDIPEEVRDALDIRFVKRADEVL 766 Query: 455 SV 456 ++ Sbjct: 767 AL 768 >UniRef50_B0S2N4 ATP-dependent protease La n=11 Tax=Bacteria RepID=B0S2N4_FINM2 Length = 776 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 60/426 (14%), Positives = 135/426 (31%), Gaps = 59/426 (13%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------ 144 G + G + + G PG GK+++ ++ ++ + G ++ Sbjct: 349 GSLKGPILCLVGPPGVGKTSIARSIADATNRKFVSMRLGGVRDEAEIRGHRKTYIGAMPG 408 Query: 145 --------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVA 195 + + +L E + L V+D Q + P ++ Sbjct: 409 RIITQLQKAKKLNPVFLLDEIDKLASDFRGDPASALLEVLDPEQNSEFTDNYIEIPVDLS 468 Query: 196 QVRETAAY-----LTRFAKTRGVAIVMVGHVTKD-----GSLAGPKVLE---------HC 236 V + R I + + + P+ L+ H Sbjct: 469 DVLFITTANSQEQIPDALLDRMEVIRVTSYTDSEKFEIANRYLLPRQLKENGMDKSQFHI 528 Query: 237 IDCSVL---LDGDADSRFRTLR------SHKNRFGAVNELGVFAMTEQGLREVSNPSAIF 287 ++ + +S R L K V + + E S + Sbjct: 529 TRDAIYTIINNYTRESGVRELERNIGKVIRKAVVKIVKDDVKKVVVNNKNLEKFLGSKLV 588 Query: 288 LS----RGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLA 343 L R D V + + G L +E + ++ ++++ +A + Sbjct: 589 LDDEIPREDTVGVVNGLAWTQVGGVILTIEANVMDGSGKTQLTGKLGDVMKESAMAAISY 648 Query: 344 VLHRHG-----GLQMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 + G ++D+ ++V G V SA + ++ A+VS+L R + D + Sbjct: 649 IRSNQEALGIKGEFYKEKDIHIHVPEGAVPKDGPSAGVTMVTALVSALTGRKVKHDFAMT 708 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLS 451 GE+ L G + + +E++ A ++G + +P N K + ++ + + Sbjct: 709 GEITLTGRVLAIGGVKEKVLAAHRYGINKVFLPKENKRDIQDIDPKIRQKIKFYFTSNVK 768 Query: 452 DALSVF 457 + L Sbjct: 769 EILDEV 774 >UniRef50_Q0CW39 ATP-dependent protease La 2 n=30 Tax=Leotiomyceta RepID=Q0CW39_ASPTN Length = 931 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 69/437 (15%), Positives = 141/437 (32%), Gaps = 80/437 (18%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR-----AHRLGLPTDNL 151 +L+ G PG GK++L L ++ + + G ++ A GL + L Sbjct: 480 ILLLVGPPGTGKTSLARSVAASLGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLVVNGL 539 Query: 152 ---------NMLSETS-IEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV--- 197 +L E + + L V+D Q + P +++V Sbjct: 540 KKVGVANPVFLLDEIDKVGGANFQGDPSAAMLEVLDPEQNHTFSDHYINIPIDLSKVLFI 599 Query: 198 ---------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234 R L AK ++ + +G G +L Sbjct: 600 ATANSLDTIPAPLLDRMETITLSGYTTVEKRHIAKRH----LIPKQIRSNGLSDGQVILS 655 Query: 235 HCIDCSVLLDGDADSRFRTLRSH--------KNRFGAVNELGVFA-----MTEQGLREVS 281 + + +S R L ++ + G +T L E+ Sbjct: 656 DEVIDKTITAYTRESGVRNLEREIGSICRYKAVQYADAADTGRLEAYNPVVTLDDLEEIL 715 Query: 282 NPSAI---FLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNR 337 + + ++ G + ++ I+ +G + + Sbjct: 716 GIERFDEEIAEKHGRPGVVTGLVAYSTGGQGSILFIEVADMPGNGRVQLTGKLGDVLKES 775 Query: 338 LAILLAVLHRH---GGLQ-------MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLR 386 + + L + H GL M ++ + V+ G + SA LA + ++S Sbjct: 776 VEVALTWVKAHSYELGLTPDPNEDIMKNRSLHVHCPSGAIPKDGPSAGLAHTIGLISLFT 835 Query: 387 DRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPE 440 + +P L + GEV L G + PV +E++ A + G + ++P N VPK+ + Sbjct: 836 GKAVPPKLAMTGEVSLRGRVMPVGGIKEKLIGAHRAGVKTVLIPYQNRKDVKDVPKEVSD 895 Query: 441 GMQIFGVKKLSDALSVF 457 + I V+ + + + Sbjct: 896 ELDIIYVQHIWEGIRHV 912 >UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LV6_SYMTH Length = 466 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 29/228 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEE 132 R STG + D VLGGG+ P SA L+ G PG GK+TL +Q LC+ A + Y T EE Sbjct: 2 HARLSTGVEGLDSVLGGGLFPASATLVRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEE 61 Query: 133 SLQQVAMRAHRLGLPTDNLNMLSETSI----------EQI------CLIAEEEQPKLMVI 176 +Q+ A LG L + + E I + E + +V+ Sbjct: 62 FPEQIYRDARELGFDLQALEQAGKLQVITLDPGAFLDEAIRPGGLLEELKREIGLRRVVV 121 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236 DS+ ++ +A + R T L G ++V GP E+ Sbjct: 122 DSVTLLELALAEKGG------RRTLYLLRNALHRMGATSLLVEE---GAPAEGPSAAEYM 172 Query: 237 IDCSVLLDGD--ADSRFRTLRSHKNRFGAVNE-LGVFAMTEQGLREVS 281 +D + L D +R R L K+R VF ++ +G+R + Sbjct: 173 VDTVLHLTYDDFEVNRLRHLEVRKHRGSPFRTGKHVFVISRRGIRVLP 220 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 12/144 (8%) Query: 35 TEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP 94 + ++ + G + + ++ D+++ E+ TG D LGGG+ Sbjct: 194 VRKHRGSPFRTGKHVFVISRRGIRVLPALDRVPDLTVGEV--VPTGLDRLDECLGGGIPR 251 Query: 95 GSAILIGGNPGAGKST----LLLQTLCKLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPTD 149 GS +++ N K L L Q + VAM G Sbjct: 252 GSTLVLNVNS---KCNYRYLLGAIAAAHLRQGDGYVAVCSAVRPPAVVAMVLSLYGFDAA 308 Query: 150 NLNMLSETSIEQICLIAEEEQPKL 173 L +E I P+L Sbjct: 309 RL--GAEGRWRYIEQEGRPVPPEL 330 >UniRef50_D2VDX6 Lon protease n=1 Tax=Naegleria gruberi RepID=D2VDX6_NAEGR Length = 1007 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 68/456 (14%), Positives = 147/456 (32%), Gaps = 91/456 (19%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--GLPTDNL 151 G IL+ G PG GK+++ L ++ V G + ++ +P + Sbjct: 529 KGKIILLMGPPGVGKTSIGKSIASSLGREFHRFSVGGLTDVSEIKGHRRTYIGSIPGKLI 588 Query: 152 NMLSE-------TSIEQICLIAEEEQPK-----LMVIDSIQVMHMAD------------- 186 N++ I++I + Q L V+D Q D Sbjct: 589 NIMKHCKTNNPVIMIDEIDKLGRSHQGDPASALLEVLDPEQNNAFVDHYLDVPYDLSDVL 648 Query: 187 -------VQSSPGSVAQVRETAAYLTRFAKTRGVAI----VMVGHVTKDGSLAGP----- 230 + S PG + R L+ + V I ++ + + G Sbjct: 649 FVCTANVLDSIPGPLLD-RMEVLRLSGYILEEKVHITRNYLLPKKIEETGLYVQKAKEKK 707 Query: 231 -------KVLEHCIDCSVLLDGDADSRFRT-LRSHKNRFG---AVNELGVFAMTEQGLRE 279 ++E I G + L K + + + +TE L E Sbjct: 708 PLLTVTNGLIEKLIREHCREAGVRNLEKHIELICRKVAYKIAKSNKKPAPIHLTENDLEE 767 Query: 280 -VSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMA-------------- 324 V P G ++ + W + I+ + + A Sbjct: 768 LVGKPVFTSDRYYLTTPVGVTMGLAWTSMGGSTLYIETISEKLGQADIPVATTDNATTTA 827 Query: 325 ----NPRRVAVGLEQNRLAILLAVLHRHGGLQMADQD----------VFVNVV-GGVKVT 369 N G + + ++ + + + + D + +++ GGV Sbjct: 828 SVPMNGSLKCTGSMGDVMKESSSIAYSYAKNHLFNVDPKNDFFRKTNIHMHIPEGGVNKD 887 Query: 370 ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIV 429 SA + ++ +++S ++P+ +L + GE+ + G++ + +E++ A + G I+ Sbjct: 888 GPSAGVTMVTSLLSLALNKPVRHNLAMTGELTITGKVLAIGGVKEKVIAARRSGITTVIL 947 Query: 430 PAAN------VPKKAPEGMQIFGVKKLSDALSVFDD 459 PA N + + +G+++ SD + Sbjct: 948 PAGNRRDWDELDENIKKGLEVHFADYYSDVFRISFG 983 >UniRef50_A9F8L0 ATP-dependent protease La n=3 Tax=Proteobacteria RepID=A9F8L0_SORC5 Length = 799 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 137/428 (32%), Gaps = 64/428 (14%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR---------- 140 G + + G PG GK++L + + + G ++ Sbjct: 345 GKARATILCFAGPPGVGKTSLGQSIADATGRPFVRISLGGVHDEAELRGHRRTYVGALPG 404 Query: 141 ----AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVA 195 A + + + +L E E L V+D Q + P ++ Sbjct: 405 RIVHALKKAKVKNPIVLLDEVDKLGAGWRGSPEAALLEVLDPEQNRTFVDHYLELPFDLS 464 Query: 196 QV------------------RETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLA- 228 +V R L A++ V + H GSL+ Sbjct: 465 EVVFLCTVNDLGALSAPLRDRLEVIELSGYTPDEKIAIARSHLVPKQLKEHAIDPGSLSI 524 Query: 229 GPKVLEHCIDCSVLLDGDADSRF------RTLRSHKNRFGAVNELGVFAMTEQGLREVSN 282 + L + G R + R A + + L Sbjct: 525 TDEALAAIVRDYTREAGVRQLGREIKKLCRAVALEIARA-ADGKAPRVVVEASDLGTYLG 583 Query: 283 PSAIFLSRGDEVTS-GSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLA 339 F + + G + + W G L +E + + ++ ++++ A Sbjct: 584 KVRFFSDVAERTSVAGVATGLAWTPVGGDILFIETSRMPGKGRVEITGQLGDVMKESAKA 643 Query: 340 ILLAVLHRHGGL-----QMADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQD 393 L V L ++ +D+ ++V GGV SA + + A+ S L R + D Sbjct: 644 ALTYVRSHAIELGVDTAKLEAEDLHIHVPAGGVPKDGPSAGVTMFTALTSLLSARRVRSD 703 Query: 394 LVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGV 447 + GE L G + PV + ++ A + G +R ++P N +PK+ +++ V Sbjct: 704 TAMTGECTLRGRVLPVGGIKSKVLAAHRAGIKRVVLPQKNARDAEEIPKEVRAELELIFV 763 Query: 448 KKLSDALS 455 + +S ++ Sbjct: 764 EDMSQVIA 771 >UniRef50_O69300 ATP-dependent protease La n=24 Tax=Epsilonproteobacteria RepID=LON_CAMJE Length = 791 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 139/432 (32%), Gaps = 74/432 (17%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------ 144 + + G PG GK++L L +++ + + G E + ++ Sbjct: 359 ILCLYGPPGVGKTSLANSVSKALKRELIRIALGGLEDVNELRGHRRTYIGAMPGRITQGL 418 Query: 145 --GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV-------------------MH 183 + + +L E + L ++D Q + Sbjct: 419 IEAKQINPVIVLDEIDKLNRSFRGDPSAVLLEILDPEQNSKFRDYYLNFNIDLSKVIFIA 478 Query: 184 MADVQSSPGSVAQVRETAAYL--------TRFAKTRGVAIVMVGHVTKDGSLA-GPKVLE 234 A+ S+ + + R L K + + H K L+ + +E Sbjct: 479 TANDISNIPAPLRDRMEFIELSSYTPSEKFHIMKKYLIPDELKKHGLKSNELSIDDETIE 538 Query: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVN----ELGVFAMTEQGLREVSNPSAIFLSR 290 I G + R + R A + + + L E + + + Sbjct: 539 LIISDYTRESGVRNLRRKVAEL--CRKSAKKLLLENIKKVIINTKNLNEFLDKKVFEIEK 596 Query: 291 GD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHG 349 + E G + W +++++A+ ++G A + + + Sbjct: 597 NNGENQVGQVNGLAWTSVGGDVLKVEAVKIKGKGELTLTGSLGDVMKESARIAFSMIKVL 656 Query: 350 ----------------GLQMAD-QDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLP 391 + + D ++ ++V G SA + + A+ S D+ + Sbjct: 657 IDEGKIKIPKKIIIDPKVNVYDSYNIHIHVPDGATPKDGPSAGITISTAIASIFSDKKVK 716 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQI 444 D+ + GE+ L G++ P+ +E++ A K + A++P N +P + + M+I Sbjct: 717 ADVAMTGEIDLKGKVLPIGGLKEKLIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEI 776 Query: 445 FGVKKLSDALSV 456 V SD L Sbjct: 777 IAVDTFSDVLEY 788 >UniRef50_P78025 ATP-dependent protease La n=4 Tax=Mycoplasma RepID=LON_MYCPN Length = 795 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 134/426 (31%), Gaps = 61/426 (14%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL--------- 144 G + + G PG GKS+L L + + + G ++ Sbjct: 371 KGPIMCLVGPPGVGKSSLAKSIAEALNKCFVKVSLGGVHDESEIRGHRKTYLGSMPGRIL 430 Query: 145 -GLP----TDNLNMLSETSIEQICLIAEEEQPKLMVIDS-IQVMHMADVQSSPGSVAQV- 197 G+ + L +L E L V+D + + +++V Sbjct: 431 KGMVRAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYVEEDYDLSKVM 490 Query: 198 -----------------RETAAYLTRFAK--TRGVA-IVMV------GHVTKDGSLAGPK 231 R LT + + + +V + D + Sbjct: 491 FVATANYIEDIPEALLDRMEVIELTSYTEQEKLQITKSHLVKRCLDDAEIKTDDLKFTDE 550 Query: 232 VLEHCIDCSVLLDGDADSRFRTLRSHKNRF----GAVNELGVFAMTEQGLREVSNPSAIF 287 + + I G R ++ ++ E V + + + + Sbjct: 551 GISYIIKFYTREAGVRQLE-RLIQQIVRKYIVNLQKTGEQQVVVDVDLVKKYLKKEIFDY 609 Query: 288 LSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVL 345 R ++ G + + G L +E+ + + + + ++ L V Sbjct: 610 TVRDEDALPGIVNGMAYTPTGGDLLPIEVTHVAGKGDLILTGNLKQTMRESASVALGYVK 669 Query: 346 HRHGGLQ-----MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGE 399 D+ ++V GG + SA AL+ A++SSL + + + + GE Sbjct: 670 ANAQSFNINPNLFKKVDINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKVDPKIAMTGE 729 Query: 400 VGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDA 453 + L G++ + +E+ A + G R +P N VPK + ++I VK+ D Sbjct: 730 ITLRGKVMTIGGVKEKTISAYRGGVRTIFMPEKNERYLDEVPKDIVKDLEIILVKEYKDI 789 Query: 454 LSVFDD 459 + + Sbjct: 790 YNKIFN 795 >UniRef50_A6GAZ5 ATP-dependent protease La n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAZ5_9DELT Length = 862 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 151/401 (37%), Gaps = 53/401 (13%) Query: 100 IGGNPGAGKSTLLLQTLC-KLAQQMKTLYVTGEESLQQVAM--RAHRLGL-------PTD 149 + G+P + LL+TL + + Y+ L QV A+ LG + Sbjct: 449 LRGDPASA----LLETLDPEQNDAFEDHYLGVPYDLSQVVFICTANELGAIPMVLRDRLE 504 Query: 150 NLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT---R 206 +N+ T E++ + E PK + + + + + PGS+ + R L R Sbjct: 505 IINLSGYTLAEKLAIAREHLLPKELHENGLGGVASIE----PGSLREQRARNESLLARSR 560 Query: 207 FAKTRGVAIVMVGHVTKDGSLAGPKVLEHC-----IDCSVLLDGDADSRFR--------T 253 A G + V + G + L+ + + + +S R Sbjct: 561 LAAESG-TAFELAEVLEKAEAEGLERLDSVLVDDAVFERLATEYTRESGVRSLQRQLAAL 619 Query: 254 LRSHKNRFGAVNELGVF---AMTEQGLREVSNPSAI---FLSRGDEVTSGSSVMVVWEGT 307 LR + + +T + L V P + RG V + + G Sbjct: 620 LRDVAMQRAETPASELVTPQRITVEDLLRVLGPPRYREELMGRGPRVGVATGLGWTATGG 679 Query: 308 RPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLH--RHGGLQMADQDV---FVNV 362 R L VE+ + R+ ++++ A L V R GL + D D +++ Sbjct: 680 RLLFVEVTTTAGKGKLRMTGRLGEVMKESAQAALSLVKSDARRFGLDIDDLDRRDIHIHL 739 Query: 363 V-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421 G V SA + L+ A+VS+L + DL + GEV L G + V +E++ A + Sbjct: 740 PSGAVPKDGPSAGITLVTALVSTLGGYAVRHDLAMTGEVTLRGHVLAVGGIREKVLAAHR 799 Query: 422 HGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALSV 456 G R I+PA N +P+ A +++ V + + L + Sbjct: 800 AGIRDVILPARNRKDEPEIPEAARADLRLHFVGHIDEVLEL 840 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 21/166 (12%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------- 140 G + G PG GK+TL L ++ + + G ++ Sbjct: 364 RGPLLCFAGPPGVGKTTLAKSIAATLGREFVRISLGGVRDDAEIRGHRRTYVGALPGRLV 423 Query: 141 -AHRLGLPTDNLNMLSETS-IEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQV 197 A + TD + +L E + L + L +D Q D P ++QV Sbjct: 424 QAMKTAGTTDPVILLDEIDKLSGADLRGDPASALLETLDPEQNDAFEDHYLGVPYDLSQV 483 Query: 198 RETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243 A G +++ + +L+G + E L Sbjct: 484 -----VFICTANELGAIPMVLRDRLEIINLSGYTLAEKLAIAREHL 524 >UniRef50_A9ETZ9 ATP-dependent protease La n=2 Tax=Bacteria RepID=A9ETZ9_SORC5 Length = 811 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 71/429 (16%), Positives = 145/429 (33%), Gaps = 70/429 (16%) Query: 92 VVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAH--------- 142 + G +L G PG GK+++ L ++ + + G + Sbjct: 366 ISRGPILLFLGPPGTGKTSIAESIARALGRKYVRVSLGGARDEADIRGHRRTYVGAMPGR 425 Query: 143 ------RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVA 195 R+G + + +L E + L V+D Q + P ++ Sbjct: 426 ILQGIKRIGSK-NPVIVLDEVDKLGASYQGDPGAALLEVLDPAQNDGFVDHYLGLPFDLS 484 Query: 196 QV-RETAAYLTRF----AKTRGVAIVMVGHVTKDG-SLAGPKVLEH-------------- 235 +V A R + G+ ++ +A +L Sbjct: 485 EVLFICTANFRETIPPPLFDRMEPALFAGYTEQEKHEIARKYLLPRQRKECGLREEQLRV 544 Query: 236 -------CIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMT----EQGLREVSNPS 284 I G RTL + + G + ++E+ + Sbjct: 545 TGTAIGGIISGYTREAGVRQLE-RTLGALARKAARRIAAGEIERAVVGADDDVKELLGRA 603 Query: 285 AIFLSRGDEV-TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG----LEQNRLA 339 + L R + G + + + ++ ++A V V G + + Sbjct: 604 RMRLERRLQYDQPGVATGMYYTQMGGDIMHVEASVMP---GKGDFVLTGQLGDVMKESGR 660 Query: 340 ILLAVLHRH---GGLQ---MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQ 392 L+ H G+ + +DV ++V G V SA + + +A+VS+L RP+ Sbjct: 661 AALSYARAHAAELGVPSDRLQRRDVHIHVPAGAVPKDGPSAGVTMAVALVSALSGRPVRS 720 Query: 393 DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFG 446 D+ + GE+ L G + P+ +E++ A + G ++PA N +P + ++ + Sbjct: 721 DIAMTGEITLRGTVLPIGGIKEKVLGAHRAGIFEILLPADNEADLDDLPAEVRSSLEFYL 780 Query: 447 VKKLSDALS 455 V L +AL+ Sbjct: 781 VNTLDEALA 789 >UniRef50_C6Q2E8 Peptidase S16 lon domain protein (Fragment) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2E8_9CLOT Length = 225 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAI--LLAVLHRHGGLQMADQDV 358 TR +++I +V+ ++N R + R ++ ++ V+ R+ GL + D+ Sbjct: 38 TAKKSNTRKGVLKITGIVEEEEISNQNRKMIRTSTARCSVENVITVIERNFGLNCDEYDI 97 Query: 359 FVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISE 418 +N GG V SA +++ A+ S++ + P+ ++ + GE+ + G++R V ++ Sbjct: 98 HINFSGGAPVDGPSAGISIATAVYSAINNIPVSNEVAMTGELSIHGDVRAVGGVNAKVQA 157 Query: 419 AAKHGFRRAIVPAANVPKKA--PEGMQIFGVKKLSDALSV 456 A K G + I+P N + +G+++ VK + + + + Sbjct: 158 AKKAGAKVVIIPDENWQQSFSKLDGIKVITVKNIKEVIKI 197 >UniRef50_C6BWX1 Response regulator receiver protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX1_DESAD Length = 682 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 157/477 (32%), Gaps = 71/477 (14%) Query: 40 AASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAIL 99 A + + +L + + L R +R + G + G + Sbjct: 212 ATVKTAVEAMKNGADQYLGKPVNLTRLREHVQDLLSR--------NRRIQG--LQGPVLC 261 Query: 100 IGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPTDNL--- 151 G PG GK+++ L ++ + + G ++ G N+ Sbjct: 262 FSGPPGTGKTSIGCAIAESLGREFICMSLAGLRDESELRGHRRTYVGAMAGRILQNIQKT 321 Query: 152 ------NMLSETSIEQICLIAEEEQPKLMVIDSIQV-MHMADVQSSPGSVAQV------- 197 ML E + L ++D Q + + P ++ V Sbjct: 322 GVRNPVIMLDEMDKIIQNFQGDATSVLLEILDPQQNSAFVDNYLGLPFDLSGVLFIATAN 381 Query: 198 -----------RETAAYLTRFA--KTRGVA--IVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 R + + + + ++ + K G + +++ Sbjct: 382 MVERIPEPLMDRMEMIEFSSYTPGEKLQITQNYMLPNQLLKHGFSVNELEVAPDALNTII 441 Query: 243 LDGDADSRFRTL---------RSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDE 293 D ++ R L + + R E + + + P F + + Sbjct: 442 ADYTREAGLRGLDKQIASLCRKLARRRLSGQEEALPIKLAAAEIHGIMGPPPHFSATVTK 501 Query: 294 V-TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAILLAVLHRHGGL 351 + +G + +VW ++ ++A+ H ++G + + L+ L + G Sbjct: 502 MLKTGVATGLVWSENGGEIIFVEAVRMHGSKNLLLTGSLGEVLRESAQTALSFLRANAGK 561 Query: 352 Q------MADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAG 404 D+ +++ G V SA + + +AM+S L R + +D+ GE+ L G Sbjct: 562 FGLSDDFFETSDIHIHIPAGAVTKEGPSAGVTIAVAMLSQLTGRMVREDMAFSGEITLHG 621 Query: 405 EIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 ++ PV +E++ A + ++PA + + G+++ V +L DAL Sbjct: 622 DVLPVGGVREKVMAAVRARISTIVLPAKCAQAVEQLEDEVLGGLEVRLVSRLEDALE 678 >UniRef50_C4JRY8 ATP-dependent protease La n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JRY8_UNCRE Length = 900 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 68/426 (15%), Positives = 143/426 (33%), Gaps = 70/426 (16%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTL-----YVTGEESLQQVAMRAHRLGLPTDNL 151 +L+ G PG GK++L L ++ + YV + ++G+ + + Sbjct: 461 ILLLVGPPGTGKTSLAKSVATSLGRRFHRISLGRTYVAAM--PGLIVNGLKKVGV-ANPV 517 Query: 152 NMLSETS-IEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV------------ 197 +L E + + L V+D Q + P +++V Sbjct: 518 FLLDEIDKVGGANFHGDPSAAMLEVLDPEQNHSFSDHYINIPIDLSKVLFIATANSLDTI 577 Query: 198 ------RETAAYL--------TRFAKTRGVAI-VMVGHVTKDGSLAGPKVLEHCIDCSVL 242 R L A+ V V ++ +VL+ I Sbjct: 578 PAPLLDRMETIQLSGYTTIEKRHIARRHLVPKQVRTNGLSDGQVELSDEVLDKIITSYTR 637 Query: 243 LDGDADSRFRTLRSHKNRFGA--------VNELGVF--AMTEQGLREVSNPSAI---FLS 289 G + RF A + G + +T + L E+ Sbjct: 638 EAGVRNLEREIGSV--CRFKAVQYADAKDDEKAGTYNPKVTIEDLDEILGIEKFDEEIAE 695 Query: 290 RGDEVTSGSSVMVVWEGTRP--LLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHR 347 + + ++ G + L +E+ + + + ++ L+++ L V Sbjct: 696 KHARPGIVTGLVAYSSGGQGSILFIEVADMPGNGSVQLTGKLGDVLKESVEVALTWVKAH 755 Query: 348 HGGLQM---ADQDV------FVNVV-GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVF 397 L + ++D+ V+ G + SA LA +A+VS + +P ++ + Sbjct: 756 SYELALTQDPNEDIMKHRSLHVHCPSGAIPKDGPSAGLAHTIALVSLFSGKTVPPEIAMT 815 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLS 451 GE+ L G + PV +E++ A + G + ++P N + ++I VK + Sbjct: 816 GEISLRGRVMPVGGIKEKLIGAHRAGVKTVLLPDHNRKDVRDVPVEVQSELEIVYVKHIW 875 Query: 452 DALSVF 457 +A+ Sbjct: 876 EAIRHI 881 >UniRef50_C6XS66 ATP-dependent protease La n=31 Tax=Bacteroidetes RepID=C6XS66_PEDHD Length = 833 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 138/421 (32%), Gaps = 63/421 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL------------ 144 I + G PG GK++L L ++ + + G + ++ Sbjct: 397 IICLVGPPGVGKTSLGKSIAKALNRKYVRMALGGIKDEAEIRGHRKTYIGAMPGRIIQSI 456 Query: 145 --GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQV----MHMADVQSSPGSVAQVR 198 ++ + +L E + L V+D Q H + +V + Sbjct: 457 KKAGASNPVFVLDEIDKVGSDFRGDPSSALLEVLDPEQNSAFNDHYVETDYDLSNVLFI- 515 Query: 199 ETAAYLTRF--AKTRGVAIVMVGHVTKDGSLAGPK-----------------------VL 233 TA L+ A + I+ V T + + K ++ Sbjct: 516 ATANSLSSIHPALLDRMEIIEVNGYTIEEKIEIAKKYLLPKQKEQHGIKTKDITLKNNLI 575 Query: 234 EHCIDCSVLLDGDADSRFRT---LRSHKNRFGAVNELGVFAMTEQGLREVSN-PSAIFLS 289 E I+ G + +R + A+ E A++ + + P Sbjct: 576 EKVIEDYTRESGVRGLEKKIGSLVRGVATKI-AMEESYDPALSLDDVERILGAPLYDKDL 634 Query: 290 RGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAIL-LAVLHRH 348 +G + W ++ I+A + +G AI+ LA L H Sbjct: 635 YEGNEVAGVVTGLAWTQVGGDILFIEASLSPGKGKLTLTGNLGEVMKESAIIALAYLRAH 694 Query: 349 GGLQ------MADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVG 401 L DV V+V G SA + +L A+ S+ R + +L + GE+ Sbjct: 695 AELFNIDYALFDQWDVHVHVPAGATPKDGPSAGITMLTALTSAFTQRKVKSNLAMTGEIT 754 Query: 402 LAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLSDALS 455 L G++ PV +E+I A + + I+ +N + + + + V ++ + + Sbjct: 755 LRGKVLPVGGIKEKILAAKRANIKDIILCKSNRKDILEIKESYIKDLNFHYVTEMKEVID 814 Query: 456 V 456 + Sbjct: 815 L 815 >UniRef50_C9KM28 ATP-dependent protease, Lon family n=3 Tax=Clostridiales RepID=C9KM28_9FIRM Length = 651 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 77/438 (17%), Positives = 142/438 (32%), Gaps = 80/438 (18%) Query: 99 LIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLP----------- 147 L+ G PG GK+T + + + A++ E V L Sbjct: 215 LLYGPPGVGKTT-AARLVLEAARKKPAS--PFREDAPFVETDGTTLRWDPRDITNPLLGS 271 Query: 148 -TDNLNMLSETSI------EQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRET 200 D + ++ ++ E + E ++ ID I M + R Sbjct: 272 VHDPIYQGAQKTLADSGIPEPKPGLVTEAHGGILFIDEIGEMDEMLQNKLLKVLEDKRAY 331 Query: 201 AAY------------LTRFAKTRGVAI--VMVGHVTKDG----------------SLAGP 230 R G V++G T+D P Sbjct: 332 FESAYYDPTDPKVPPYIRKLFEEGAPADFVLIGATTRDAGHINPALRSRCAEIYFEPLTP 391 Query: 231 KVLEHCID------------CSVLLDGDADSRFR-TLRSHKNRFG-----AVNELGVFAM 272 K +E + L + R + + + A + + Sbjct: 392 KHIEAIVQNAAAKLKVALEPGVAALISEYTVEGRKAINILADAYSLALEKADGRMEGLTI 451 Query: 273 TEQGLREVSNPSAIFL----SRGDEVTSGSSVMVVWEGTRPLLVEIQA--LVDHSMMANP 326 + EV+ S ++ G + G ++EI+A Sbjct: 452 GRAAVYEVAQVSRLYQFVTKKARHTAVQGHIFGLGVAGFLGSVIEIEAVAFSAREKGKGT 511 Query: 327 RR---VAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVS 383 R A + ++ + +V+ + G + D DV +NV+GG + SA A+L +VS Sbjct: 512 VRFNETAGSMAKDSVFNAASVMRQLTGKDIHDYDVHINVIGGGNIDGPSAGTAILACIVS 571 Query: 384 SLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE--G 441 ++ R + QD+ V GE+ LAG +RPV E+ A + G + ++P N + G Sbjct: 572 AVTGRRIRQDVAVTGEISLAGRVRPVGGVFEKAYGARQAGIKTLVIPKENERDIPEDLLG 631 Query: 442 MQIFGVKKLSDALSVFDD 459 + I V+ +A + + Sbjct: 632 LDIHAVETAEEAFQLIFE 649 >UniRef50_O31147 ATP-dependent protease La n=52 Tax=Bacteria RepID=LON_MYCSM Length = 779 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 60/426 (14%), Positives = 135/426 (31%), Gaps = 61/426 (14%) Query: 90 GGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----- 144 GG G+ +++ G PG GK++L L ++ + + G ++ Sbjct: 340 GGRGSGAVMVLAGPPGVGKTSLGESVARALDRKFVRVALGGVRDEAEIRGHRRTYVGALP 399 Query: 145 ---------GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD--------- 186 + + +L E + L V+D Q D Sbjct: 400 GRIVRAIGEAGSMNPVVLLDEIDKVGSDYRGDPAAALLEVLDPAQNHTFRDHYLDLDLDL 459 Query: 187 -----------VQSSPGSVAQVRETAAYLTRFAKTRGVAI---VMV------GHVTKDGS 226 +++ P ++ R + + +AI ++ G +T D Sbjct: 460 SDVVFLVTANVIENIPSALLD-RMELVEIDGYTADDKLAIAQGFLLPRQRERGGLTSDEV 518 Query: 227 LAGPKVLEHCIDCSVLLDGDADSRF---RTLRSHKNRFGAVNELGVFAMTEQGLREVSNP 283 L G + +R + + + E L E Sbjct: 519 TVTEAALRKIAADYTREPGVRQFERLLAKAMRKAATKLADHPQAAPITIDEPDLVEYLGR 578 Query: 284 SAIFLSRGD-EVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQNRLAIL 341 + G + + G ++ I+A +G + + I Sbjct: 579 PRFLPESAERTAVPGVATGLAVTGLGGDVLYIEANSTEGEPGLQLTGQLGDVMKESAQIA 638 Query: 342 LAVLH---RHGGLQMA--DQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLV 395 ++ + + G+ ++ + ++V G V SA + ++ A+VS R + D+ Sbjct: 639 MSYVRAHAKQLGVDPEALNRRIHIHVPAGAVPKDGPSAGVTMVTALVSMATGRKVRGDVG 698 Query: 396 VFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKK 449 + GEV L G + P+ ++++ A + G +P N P + + + + Sbjct: 699 MTGEVTLNGRVLPIGGVKQKLLAAQRAGLSTVFIPQRNQPDLDDVPADVLDALDVRPMTD 758 Query: 450 LSDALS 455 ++D ++ Sbjct: 759 VADIIA 764 >UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSF7_CHLT3 Length = 574 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 115/306 (37%), Gaps = 39/306 (12%) Query: 65 KLSDISLEE--LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ- 121 +S++ + LP+ TG K D VL GG+ G + ++ GN G GK+ L ++ L + Q Sbjct: 7 PMSNVEKMKAGLPKCPTGIKGLDEVLFGGIPKGRSTMVLGNAGCGKTLLAMEFLVQGIQQ 66 Query: 122 -QMKTLYVTGEESLQQVAMRAHRLGLPTDN-----------LNMLSETSIE--------- 160 L+V+ EE + + G + L++ +E Sbjct: 67 FGAHGLFVSFEEKKEDLLEDMQSFGWNLEAAEQSGALLIKHLDLGDSEFLESGEYDLGGL 126 Query: 161 --QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218 ++ ++ K +V+D+++ + +V +R L R+ K++GV +++ Sbjct: 127 FVRLEFAIDKIGAKRVVLDTVETLFTT-----YKNVGALRTEFRRLIRWLKSKGVTVIIT 181 Query: 219 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRF--RTLRSHKNR--FGAVNELGVFAMTE 274 G G + DC V LD ++ R LR K R F NE F ++E Sbjct: 182 GETDSYGKT-RHGIEAFVSDCVVQLDNRIQNQVPTRRLRVLKYRGSFHGTNEYP-FIISE 239 Query: 275 QGLREVSNPSAIFLSRGDEVTSGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVG 332 QGL + S S + + E G R L+ + +A Sbjct: 240 QGLSLLPITSVGLNYDVATDFVPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQ 299 Query: 333 LEQNRL 338 Q Sbjct: 300 FAQAAC 305 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 26/222 (11%) Query: 77 FSTGFKEFDRVLGG-GVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEESL 134 +G D +LGG G GS++L+ G G GKS+L Q + K LY+ EES+ Sbjct: 261 VPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACGRGEKCLYLNMEESV 320 Query: 135 QQVAMRAHRLGLPTDN-----LNMLSETS---------IEQICLIAEEEQPKLMVIDSIQ 180 Q+ +G+ + L + T + ++ + E +P+ ++ID + Sbjct: 321 WQIVRNMRSIGVELEPFIEKGLLLFEPTRSTMCGLEYHLVKLIKLLETYEPQHLIIDPVS 380 Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVG-HVTKDGSLAGPKVLEHCIDC 239 + G +V+ + L + K R + +M T + + +D Sbjct: 381 SFL------AVGESIEVKSMMSRLIDYLKMRHITTIMTNLSDTNAQNEITQMDISSLMDT 434 Query: 240 SV--LLDGDADSRFRTLRSHKNRF-GAVNELGVFAMTEQGLR 278 + + + + + R + K+R G N++ F +T +G+ Sbjct: 435 WMTVQMVRNQNEQNRLIYIIKSRGMGHSNQMREFLITSEGIH 476 >UniRef50_D1Z1M4 Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1M4_METPS Length = 254 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 96/258 (37%), Gaps = 30/258 (11%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AQQMKTLYVTGEE 132 R TG D++ GGG + G L+ G PG GK+T LQ L + ++VT EE Sbjct: 3 TTRLKTGIPGLDKMTGGGFLKGDTTLVTGPPGTGKTTFGLQFLMHGVLESQSGVFVTVEE 62 Query: 133 SLQQVAMRAHRLGLPTDNLN---------MLSET------SIEQICLIAEEEQPKLMVID 177 + +++A A G L + SE I Q + + + +VID Sbjct: 63 TPEKIANDALNFGWDLRKLEAEGRLRLYQLRSEMLQSGGAPIMQCLDVINSVKAERVVID 122 Query: 178 SIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV----TKDGSLAGPKVL 233 I + M +R + K G+ +++ V ++ ++ L Sbjct: 123 PISLYSMN-----VHDPNDLRRELYAFVNYMKENGLTLLLTHEVPDIMSRTSKIS-DYGL 176 Query: 234 EHCIDCSVLLDGD--ADSRFRTLRSHKNRFGAVN-ELGVFAMTEQGLREVSNPSAIFLSR 290 E +D ++L + R++ K R + + + + ++ +G+ E+ P + Sbjct: 177 EFIVDSIIMLQYVEIESAISRSINVLKMRGSSHDMAIRRYRISGKGI-EIEAPFEGYEGI 235 Query: 291 GDEVTSGSSVMVVWEGTR 308 S E R Sbjct: 236 MSGTARKSGAEAFMEAFR 253 >UniRef50_C2KUM8 ATP-dependent protease La n=4 Tax=Firmicutes RepID=C2KUM8_9FIRM Length = 926 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 70/428 (16%), Positives = 141/428 (32%), Gaps = 76/428 (17%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL-----GLPTD 149 GS +L G PG GK+++ L ++ + + G + G D Sbjct: 493 GSILLFVGAPGTGKTSIGKSIAKALGRKYVRVSLGGVRDEADIRGHRRTYLGAMPGRIMD 552 Query: 150 NLN---------MLSETSIEQICLIAEEEQPKLMVIDSIQVMHMAD-VQSSPGSVAQV-- 197 ++ +L E + L V+D Q D + P ++ V Sbjct: 553 GIHKAGVSNPVMVLDEVDKLSSSYNGDPAAALLEVLDPEQNNSFTDHYMNVPYDLSDVLF 612 Query: 198 ----------------------------RETA-----AYLTRFAKTRGVAIVMVGHVTKD 224 RE + + K G + + Sbjct: 613 ICTANTTDSIPAPLLNRMEVIQYQGYTPREKFEIGKRHLMKKALKNVG--------LQPE 664 Query: 225 GSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELG----VFAMTEQGLREV 280 + LE I G + R R AV+ + + ++ L+E Sbjct: 665 NVELSDEALESIISDYTREGGVRGLKKRLDTL--CRIAAVHLVRGKGEKITVGKEDLQEY 722 Query: 281 SNPSAIFLSRGDEV-TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLA 339 + + + +E +G + W ++ I+ L +G A Sbjct: 723 LDMNPLHHRAVEEKGRAGVVTGLAWTAVGGEILFIETLATKGEGKLTITGQLGNVMKESA 782 Query: 340 ILLAVLHRHG----GLQMADQDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDL 394 + L + + D+ ++V G SA + L +A+ S + + + + Sbjct: 783 QIAISLVKSMFPEKASFFKENDLHIHVPDGATPKDGPSAGVTLTVALSSLVTGQAVCPQI 842 Query: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVK 448 + GEV L G++ P+ E++ A + G + ++P AN VP++ + ++I V+ Sbjct: 843 AMTGEVSLEGKVNPIGGLPEKLMAAERAGVKTVLIPKANVDDLRDVPEEVKDKLEIRPVE 902 Query: 449 KLSDALSV 456 + +ALS+ Sbjct: 903 NVDEALSI 910 >UniRef50_A6TM65 Sporulation protease LonB n=3 Tax=Clostridiaceae RepID=A6TM65_ALKMQ Length = 564 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 312 VEIQALVDHSMMANPRRVAV--GLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVT 369 + +VD P R + + +L V+ ++ + D D+ +N GG+ + Sbjct: 384 IITTGIVDREETNTPGRTVKRRSTALDSVDNVLTVIRKYLNVDPRDYDIHLNFPGGIPID 443 Query: 370 ETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIV 429 SA + ++ A+ S++++ + L + GE+ + G+++PV +I A + G R ++ Sbjct: 444 GPSAGITMVTAIFSAIKNLSIDSQLAMTGEISIRGKVKPVGGITAKIEAAKEAGCTRVLI 503 Query: 430 PAANVPKKAPE-GMQIFGVKKLSDALSV 456 P N ++ E +++ V + + + + Sbjct: 504 PKDNYQERFKEFKIEVIPVDTIEEVVRL 531 >UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G8K6_CHLAD Length = 565 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 33/239 (13%) Query: 73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ--MKTLYVTG 130 +P+ TG + FD + GGGV G LI G PG GK+ +TL A Q L+V+ Sbjct: 5 HIPKAPTGIRGFDEITGGGVPRGRPTLICGGPGCGKTLFAFETLVHGAAQHDEPGLFVSF 64 Query: 131 EESLQQVAMRAHRLGLPTDNLNMLSETSIEQI----------------------CLIAEE 168 EES + G +L IEQI L+ + Sbjct: 65 EESPNDLRTNFASFGFNITDLEQRGALLIEQIPLDQSDWAEVGEYDLEGLFIRLGLLIDR 124 Query: 169 EQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLA 228 K + +D+I+ + S+ + + +R L R+ + RG+ ++ + + +L+ Sbjct: 125 IGAKRIALDTIEALF-----SAFRNESLLRSELQRLFRWLRQRGLTALITAE-SNNTNLS 178 Query: 229 GPKVLEHCIDCSVLLDG--DADSRFRTLRSHKNRFGAVN-ELGVFAMTEQGLREVSNPS 284 + E DC +LLD R R K R A F + G+ + S Sbjct: 179 RFGIEEFVADCVILLDYRISEHVLTRYARIVKYRGSAHGVNEYPFTIGPHGITILPITS 237 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 26/231 (11%) Query: 71 LEELPRFSTGFKEFDRVLGGG-VVPGSAILIGGNPGAGKSTLLLQTLCKL-AQQMKTLYV 128 S+GF + D +L GG GS ILI G G+GK++L L A+ + Sbjct: 243 PASTEHISSGFPDLDSLLDGGSYYRGSTILISGPTGSGKTSLGALFLNAACARGEPAILF 302 Query: 129 TGEESLQQVAMRAHRLGLPTDN------LNMLS--------ETSIEQICLIAEEEQPKLM 174 EES Q+ +G+ L ++S ET + I E+ +++ Sbjct: 303 GFEESADQIMRNMRSIGVDLHQWYERGLLQIVSSRPTLTGLETHLITILSTVEQSGARVV 362 Query: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKV-L 233 VID I H A + L K+ G + T +V + Sbjct: 363 VIDPITGFHTIS------RPADITAMLFRLFDGLKSLGATTLATSLTTAGADPTQSEVNI 416 Query: 234 EHCIDCSVLLDGD--ADSRFRTLRSHKNRFG-AVNELGVFAMTEQGLREVS 281 +D ++L R R+L K+R N++ M QGL+ V Sbjct: 417 SSLVDTWIVLRHHEANGERNRSLLVLKSRGMRHSNQVRELVMDRQGLKLVE 467 >UniRef50_D2EGM1 Putative circadian clock protein, KaiC n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGM1_9EURY Length = 237 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 24/237 (10%) Query: 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-QQMK 124 + + E+ R +TG D L GG S + + G PGAGK+T Q L + A + K Sbjct: 2 MEKTNQTEIERETTGIPGLDEALNGGFPKSSVVFLTGTPGAGKTTFSFQFLLEGAKKGEK 61 Query: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSI------------EQICLIAEEEQPK 172 LY T EES + + + + I E I + K Sbjct: 62 GLYFTLEESQDDLMQQFMMVDSKIKDYIEKGLIKIVTIPLVDYDSMKEFISSELDAMAAK 121 Query: 173 LMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHV-TKDGSLAGPK 231 +V+DSI + M + +R+ L+ K R + +G + + L+ Sbjct: 122 RLVVDSITYLQMF-----FSDIMSIRKAVIELSNIIKARDCTAIFIGEMPYGENKLSSFG 176 Query: 232 VLEHCIDCSVLLDGDAD--SRFRTLRSHKNRFGAV-NELGVFAMTEQGLREVSNPSA 285 V E D V L S R LR K R + + G+ V PSA Sbjct: 177 VEEFASDGVVALYMVERQSSFIRALRIIKMRSTEHLTKYIPLDIKNSGI--VVYPSA 231 >UniRef50_B2TFQ5 ATP-dependent protease La n=11 Tax=Proteobacteria RepID=B2TFQ5_BURPP Length = 804 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 75/421 (17%), Positives = 142/421 (33%), Gaps = 61/421 (14%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR--------------AH 142 + G PG GK++L L + + + G ++ A Sbjct: 371 ILCFLGPPGVGKTSLGQSIARALERPFVRVSLGGVHDEAEIRGHRRTYIGAMPGNIIQAI 430 Query: 143 RLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ-VMHMADVQSSPGSVAQV---- 197 R + + +L E + + L V+D Q + P ++ + Sbjct: 431 RKAGARNCVMLLDELDKLGQGVHGDPAAAMLEVLDPEQNASFRDNYLGVPFDLSAIVFVA 490 Query: 198 -RETAAYLTRFAKTRGVAIVMVGHVTKD-----GSLAGPKVLEH---------CIDCSVL 242 + + R + + G+ + P+ LE D ++ Sbjct: 491 TANQIEGIAGPLRDRMEILDLPGYTEAEKFQIAQRFLVPRQLEACGLTAAQCELPDETLR 550 Query: 243 LDGDADSRFRTLRSHKNRFGAVNELGVFAM-----TEQGLREVSNPSAIFLSRGDEVT-- 295 +R +RS + + GAV + T + + S+I R E Sbjct: 551 AIIRDYTREAGVRSLERQIGAVFRYVALRVAEDPSTHERIEP-DRLSSILGHRRFESEVA 609 Query: 296 -----SGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRH 348 G + W G L +E + + ++ ++++ A L V R Sbjct: 610 MRTSLPGVVTGLAWTPVGGDLLFIEASSTPGGGRLVLTGQLGDVMKESVQAALTLVKSRC 669 Query: 349 GGL-----QMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGL 402 L +D+ V+V G V SA +A+ +A+ S L R + D V GE+ L Sbjct: 670 ESLHIDCSNFDKRDIHVHVPAGAVPKDGPSAGVAMFIAIASLLMGRAVRSDCAVTGEISL 729 Query: 403 AGEIRPVPSGQERISEAAKHGFRRAIVPAANVPK------KAPEGMQIFGVKKLSDALSV 456 G + PV +E++ A + G + ++PA N P A M+ ++ + DA+ Sbjct: 730 RGIVLPVGGIKEKVLAALRGGIKTVLLPARNAPDLEDIPVDARNQMRFVLLETVDDAVRE 789 Query: 457 F 457 Sbjct: 790 I 790 >UniRef50_B9L069 ATP-dependent protease La n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L069_THERP Length = 772 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 87/434 (20%), Positives = 155/434 (35%), Gaps = 64/434 (14%) Query: 87 VLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------ 140 + G + + G PG GK++L L ++ T+ + G ++ Sbjct: 330 LTNGRASRSTVLCFVGPPGVGKTSLARSIAEALGRRFVTVSLGGVRDEAEIRGHRRTYLG 389 Query: 141 --------AHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSP 191 A R + + +L E + L V+D Q + P Sbjct: 390 AYPGRIVEALRRAGTRNPVILLDELDKLATDYRGDPAAALLEVLDPEQNKQFVDHYLDVP 449 Query: 192 GSVAQV-----RETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVL------EH-CIDC 239 ++ V + A L R + R AIV+ G+ ++ G + L H + Sbjct: 450 VDLSGVLFIATANSLAPLPRPLRDRLEAIVLEGYSEEEKREIGKRYLLPRQLAAHGLPET 509 Query: 240 SVLLD----------GDADSRFRTLR------SHKN------RFGAVNELGVFAMTEQGL 277 +V L ++ R L K R G V L +T L Sbjct: 510 AVELTDSAWQELITGYTREAGVRELERQLAALCRKMAREVVERGGTVGTLSRRRVTPATL 569 Query: 278 REV-SNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVG-LEQ 335 R + P ++ E G ++ + +LV ++ LV G + Q Sbjct: 570 RRLLGPPPYREMTATSEPQVGLALGLGATPVGGMLVPVEVLVMPGRGELLVTGQAGEVLQ 629 Query: 336 NRLAILLAVLHRH---GGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDR 388 L+ + H G+ + D+ V++ G + SA LAL++A+VS+L R Sbjct: 630 ESARAALSWVRAHAARLGISADFVERMDIHVHLPEGALPKEGPSAGLALVVALVSALSAR 689 Query: 389 PLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGM 442 P+ DL + GE+ L G + PV +++ + G R + PAAN +P + Sbjct: 690 PVRSDLALTGEITLRGRVLPVGDLRQKALAVQRAGLRELVAPAANQVEASRLPASLARRL 749 Query: 443 QIFGVKKLSDALSV 456 + V+ + AL + Sbjct: 750 TVHWVETIEQALEL 763 >UniRef50_Q9ZJL3 ATP-dependent protease La n=17 Tax=Campylobacterales RepID=LON_HELPJ Length = 831 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 72/473 (15%), Positives = 152/473 (32%), Gaps = 117/473 (24%) Query: 95 GSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL---------- 144 G+ + G PG GK++L + + + + + G E + ++ Sbjct: 360 GTILCFYGPPGVGKTSLANSIAKAIERPLVRIALGGLEDVNELRGHRRTYIGSMPGRIVQ 419 Query: 145 ----GLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV-- 197 + + +L E + + L ++D Q + + ++QV Sbjct: 420 GLIEAKKMNPVMVLDEIDKVDRSVRGDPASALLEILDPEQNIAFRDHYANFSIDLSQVIF 479 Query: 198 ----------------RETAAYLTRF--------AKTRGVAIVMVGHVTKDGSLAGPKVL 233 R ++ + AK + + H K + + Sbjct: 480 IATANNIDRIPAPLRDRMEFISVSSYTPSEKEEIAKNYLIPQELEKHALKPSEV----DI 535 Query: 234 EHCIDCSVLLDGDADSRFRTLRSH-------------------KNRFGAVN--------- 265 H ++ ++ R LR K R Sbjct: 536 SHECLKLIIEKYTREAGVRDLRRQIATIMRKAALKYLEDNPHKKGRTKKSEDKDKKGGNE 595 Query: 266 ------ELGVF--AMTEQGLREVSNPSAIFLSR-GDEVTSGSSVMVVWEGTRPLLVEIQA 316 E F ++T L+E + +E G + W +++I+A Sbjct: 596 ENEKRGESKDFCVSITPDNLKEYLERMVFEIDPIDEENKIGIVNGLAWTPVGGDVLKIEA 655 Query: 317 LVDHSMMANPRRVAVGLEQNRLAILLA-----VLHRHGGLQMAD---------------- 355 + ++G + + + ++A VL + L++ Sbjct: 656 VKIRGKGELKLTGSLG-DVMKESAIIAFSVVKVLLDNETLKVPKIPSETDAENKKKKKVL 714 Query: 356 -----QDVFVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPV 409 D+ ++V G SA +A+ M S L DR + ++ + GE+ L+GE+ P+ Sbjct: 715 KVYNAYDLHLHVPEGATPKDGPSAGIAMASVMASILCDRAIRSEVAMTGELTLSGEVLPI 774 Query: 410 PSGQERISEAAKHGFRRAIVPAAN-------VPKKAPEGMQIFGVKKLSDALS 455 +E++ A K G + A++P N +P + E + I VK +++ L Sbjct: 775 GGLKEKLIAAFKAGIKTALIPVKNYERDLDEIPTEVRENLNIVAVKNIAEVLE 827 >UniRef50_Q550C8 Peptidase S16, Lon protease family protein n=1 Tax=Dictyostelium discoideum RepID=Q550C8_DICDI Length = 836 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 71/427 (16%), Positives = 147/427 (34%), Gaps = 62/427 (14%) Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR-----AHRLG 145 G + G IL+ G PG GK+++ L +Q + V G + ++ A G Sbjct: 380 GSIGGKVILLVGPPGTGKTSVGKSIANALGRQFHRISVGGLSDVSEIKGHRRTYVASMPG 439 Query: 146 LPTDNLNMLSETS----IEQICLIAEE-----EQPKLMVIDSIQVM-HMADVQSSPGSVA 195 L + ++ I++I I+ L V+D Q + P ++ Sbjct: 440 KIIQALKTVKTSNPVILIDEIDKISRSSQGDPNSALLEVLDPQQNKNFVDYYLDVPYDLS 499 Query: 196 QV------------------RETAAYL--------TRFAKTRGVAIV--MVGHVTKDGSL 227 +V R L AK + +V G ++++ Sbjct: 500 RVLFICTANDADSIPAPLLDRMEVMTLNGYIQSEQMEIAKRYLLPLVRKETG-ISEEQLQ 558 Query: 228 AGPKVLEHCIDCSVLLDGDADSRFRTLRS-HKNRFG-AVNELGVFAMTEQGLREVSNP-- 283 P+ ++ + G + + + K + ++ +T L + P Sbjct: 559 FTPEAIKKLCELYCREAGVRNLKKFIDKIFRKMAYKLSMGMEQSVIITPDNLEQYVGPIK 618 Query: 284 ---SAIFLSRGDEVTSGSSVMVV-WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQN-RL 338 S +F + + G ++ E + + R ++ + + Sbjct: 619 YPSSRLFQKQKPGIVMGLGGSLIHIESALDRFTNGPTVTTTGSLGLVMRESIDISYSYVK 678 Query: 339 AILLAVLHRHGGLQMADQDVFVNVVGGVKVTE-TSADLALLLAMVSSLRDRPLPQDLVVF 397 LL V + + ++ G + +SA + ++ +++S + + DL + Sbjct: 679 DFLLKVDASN--DYFLKNSIHIHAPDGSTQKDISSAGITIVSSLLSLATGKLVKPDLAMV 736 Query: 398 GEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKAPEGMQIFGVKKLS 451 GEV L G++ V E+I A + + I+P N +P EG++I+ V S Sbjct: 737 GEVSLTGKVIGVSGIVEKIVLAKRESIKTIIIPKENKKQLEEIPDFIKEGIEIYLVDYYS 796 Query: 452 DALSVFD 458 D S+ Sbjct: 797 DVYSIAF 803 >UniRef50_B3QSJ7 ATP-dependent protease La n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSJ7_CHLT3 Length = 836 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 64/437 (14%), Positives = 129/437 (29%), Gaps = 80/437 (18%) Query: 97 AILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRL----------GL 146 + G PG GK++L L ++ + + G ++ G+ Sbjct: 380 ILCFCGPPGVGKTSLGRSIARALGRKFIRISLGGVRDEAEIRGHRRTYIGSMPGRIIQGI 439 Query: 147 P----TDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV---- 197 ++ + ML E L V+D Q P +++V Sbjct: 440 KTAGTSNPVFMLDEIDKIGADFRGNPSSALLEVLDPAQNNAFSDHYLEIPYDLSKVMFIA 499 Query: 198 --------------RETAAYL---TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEH--CID 238 R L T + K ++ ++ + P+ + Sbjct: 500 TANTLDPIPVPLRDRMEIINLSGYTEYEKLHIAERYLIPRQLEEHGI-RPEDVSFDALTT 558 Query: 239 CSVLLDGDADSRFRTLR-------------SHKNRFGAVNELGVFAMTEQGLREVSNPSA 285 ++ ++ R L R + + L++ Sbjct: 559 KKIINAYTREAGVRNLERQIANVCRVIAKDIVIRRESDQPDETPITVVTADLKKYLGMEQ 618 Query: 286 IFLSRGDEVT-SGSSVMVVWE--GTRPLLVEIQALVDHSMMANPRRVAVG----LEQNRL 338 + + V SG +V + W G L +E M R + G + + Sbjct: 619 FYPDVSEPVMLSGVAVGLAWTPVGGDILFIE-----STVMKGTGRLILTGQLGDVMKESA 673 Query: 339 AILLAVLHR---HGGLQ---MADQDVFVNVV-GGVKVTETSADLALLLAMVSSLRDRPLP 391 L+ L + + DV V+V G + SA + +L ++ S R + Sbjct: 674 QAALSYLKSCADYFKIPDEAFRYWDVHVHVPQGAIPKDGPSAGVTILTSLASIYTQRKVK 733 Query: 392 QDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKK---------APEGM 442 + + GE+ L G I PV +E++ A + G ++P N A + Sbjct: 734 PCIAMTGEITLRGRILPVGGIKEKVLAAKRAGITEILLPEKNEKDVKEALETNGGAFSDV 793 Query: 443 QIFGVKKLSDALSVFDD 459 ++ D + + Sbjct: 794 SFKYFHEMDDLIDYVLE 810 >UniRef50_C1VBQ7 RecA-superfamily ATPase possibly involved in signal transduction n=9 Tax=Halobacteriaceae RepID=C1VBQ7_9EURY Length = 420 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 95/272 (34%), Gaps = 29/272 (10%) Query: 32 NTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLE-ELPRFSTGFKEFDRVLGG 90 N +E A S + + D E ++ R G + D ++ G Sbjct: 147 NPFSEDFADAMGSAPAFGGESEGGQNPPDTSTESFDDEEFESDIDRLDIGIEGLDEMILG 206 Query: 91 GVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESLQQVAMRAHRLGL--- 146 GV S ++ G G GK+T LQ L L K +Y+T EES ++ A G Sbjct: 207 GVPKRSLMVTIGTAGTGKTTFGLQFLNHALENGEKAVYITLEESRDRIFDTAEEKGWPFR 266 Query: 147 ---PTDNLNMLSETSIE----------QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGS 193 D L ++ +E + + + + +V+DS+ ++ + Sbjct: 267 KYADEDRLAIIDLDPVEMANSLASIQNDLPRLVADFGAERLVLDSVSLL-----EMMYDH 321 Query: 194 VAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSL-AGPKVLEHCIDCSVLLDGDADSRFR 252 ++ R R K GV ++ ++ + ++E+ D +L S FR Sbjct: 322 PSKRRSQVFDFARALKDAGVTTLLTSEAKENNPYSSRHGLVEYLADAVFVLQYVRPSDFR 381 Query: 253 ----TLRSHKNR-FGAVNELGVFAMTEQGLRE 279 + K R E + +T G+ Sbjct: 382 ETRLAIEIQKIRDANHSRETKPYDLTSDGISV 413 >UniRef50_A8NIR1 Lon protease homolog n=4 Tax=Agaricomycetes RepID=A8NIR1_COPC7 Length = 1010 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 82/469 (17%), Positives = 143/469 (30%), Gaps = 105/469 (22%) Query: 93 VPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMR------------ 140 V G +L G PG GK++L L + + + + G ++ Sbjct: 524 VRGPILLFVGPPGTGKTSLGQSIAKSLGRPFQRISLGGVRDEAEIRGHRRTYVASGPGLI 583 Query: 141 --AHRLGLPTDNLNMLSETS-IEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQ 196 A R D + +L E I Q + L V+D Q + P ++Q Sbjct: 584 VQALRKAGRPDPVLLLDEIDKIGQSNFHGDPGAALLEVLDPEQNWSFNDHYINVPIDLSQ 643 Query: 197 V------------------RETAAYL--------TRFAKTRGVAIVMVG------HV--- 221 V R L A+ + + HV Sbjct: 644 VLFICTANSLETISAPLLDRCEVIQLSGYTYDEKLHIARRFLLPKQLTANGLEKEHVNIT 703 Query: 222 --------TKDGSLAGPKVLEHCIDCSVLLD-------GDADSRFRTLRSHKNRFGAVNE 266 T+ AG + LE I V D TL A Sbjct: 704 EPAMLEIATRYTREAGVRSLERAIGGVVRFKAVEWAEFLDKGGDPNTLTQPDPPMDASPP 763 Query: 267 LGVFAMTEQGLREV-----SNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHS 321 A+ L ++ + S + G V EG ++ ++ + Sbjct: 764 TYRRAVLVSDLEKILGIARYDESESERELRRGIVYGLVVTGAGEGG---IMPVETIAVPG 820 Query: 322 MMANPRRVAVG-LEQNRLAILLAVLHRH----------------------GGLQMADQDV 358 ++G + + + L+ + R+ G + DV Sbjct: 821 SGKLKLTGSLGDVIKESGDLALSWVKRYAWELGLVDSPMEDVLKSGRILGLGSKETAIDV 880 Query: 359 FVNVVGGV-KVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERIS 417 +++ G K SA +A++ AMVS L +P ++ + GE+ L G + V +E++ Sbjct: 881 HLHLPAGAQKKDGPSAGIAMVCAMVSLLTGACVPTNIAMTGEITLRGRVTAVGGIKEKVL 940 Query: 418 EAAKHGFRRAIVPAANVPK-------KAPEGMQIFGVKKLSDALSVFDD 459 A + + I+P AN + M+ VK L +AL Sbjct: 941 GAHRAQMTKVILPYANRKDVEHDVALEIRNEMEFVFVKTLREALEAAFG 989 >UniRef50_C8W5T4 Sigma 54 interacting domain protein n=10 Tax=Firmicutes RepID=C8W5T4_DESAS Length = 575 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 79/513 (15%), Positives = 163/513 (31%), Gaps = 104/513 (20%) Query: 33 TITE-VRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGG 91 T E + R +S A + DI +E G K L G Sbjct: 39 TAVEKESRKELEKLQRLRAVSLTEPLAAKTRPSAFEDIVGQEE-----GLKSLRAALCG- 92 Query: 92 VVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ------MKTLYVT-------GEES----- 133 ++I G+PG GK+ L + + K +V +E Sbjct: 93 -PNPQHVIIYGSPGVGKTAAARLVLEQAKKNPHSPFKEKARFVEVDATTSRFDERGIADP 151 Query: 134 -----LQQVAMRAHRLGL-------------------PTDNLNMLSETSIEQICLIAEEE 169 + A LG+ D + L + ++ + E+ Sbjct: 152 LIGSVHDPIYQGAGPLGMAGIPQPKQGAVTKAHGGILFIDEIGELHPVQMNKLLKVMEDR 211 Query: 170 QPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAI-------------- 215 + ++++S + ++ + PG + + + L + G Sbjct: 212 K---VILES--AYYSSEDGNIPGHIHDIFQ--NGLPADFRLVGATTRSPEDIPPAIRSRC 264 Query: 216 -------VMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFR-TLRSHKNRFGAVNEL 267 ++ + A KV D + + + R + + G Sbjct: 265 LEVFFRPLLASEIETIAEKAVRKVAFKPEDGVLEVIKKYAANGREAVNIVQLAAGIATTE 324 Query: 268 GVFAMTEQGLREV----SNPSAIFLSRGDEVTSGSSVMVVWEGTR-PLLVEIQALVDHSM 322 G + + + V + + G + G+ +L+E++ Sbjct: 325 GYKQIRKSDVEWVVHSAQYSPRTEIKVPLQPQVGLVNGLAVYGSNIGMLLELEVGALPVA 384 Query: 323 MANPRRVAVG------------------LEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364 + G + +N + +L VL R + D D+ VN G Sbjct: 385 KGQGKVTVTGVVEEEELGSKSRTIRRKSMARNSVENVLTVLQRVTEVDPRDYDIHVNFPG 444 Query: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424 G + SA +A+ +A+ S++ P+ L + GEV + G ++PV ++ A G Sbjct: 445 GGPIDGPSAGVAIAVAVYSAITCLPVDNKLAITGEVSIRGMVKPVGGVMAKVEAACLAGA 504 Query: 425 RRAIVPAANVPK--KAPEGMQIFGVKKLSDALS 455 + +P N+ ++ +G++I V++L + L Sbjct: 505 EKVFIPKENLHDIYRSIDGIEIIAVERLEEVLE 537 >UniRef50_Q0W7M8 Putative uncharacterized protein n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W7M8_UNCMA Length = 231 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 29/237 (12%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGEE 132 + STG + D +L GG I++ G G GKSTL LQ L + K++Y++ EE Sbjct: 1 MKLLSTGVQGLDELLQGGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLEE 60 Query: 133 SLQQVAMRAHRLGLPTDN--------LNMLSETSI--------EQICLIAEEEQPKLMVI 176 ++ A G L L I ++ + + +VI Sbjct: 61 RESEIVESAEGYGWDLQTYIDNNSLILIRLDPNDIKTTLTRIKNEMPRLIKTFGATRLVI 120 Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTK-DGSLAGPKVLEH 235 DSI + + A+ R + K GV ++ ++ D + ++E+ Sbjct: 121 DSITLF-----EMMFSDEAERRLNLFEIFAILKETGVTALITSEASRADAYSSRYGLVEY 175 Query: 236 CIDCSVLLDGDADSRFR----TLRSHKNRFGAVNE-LGVFAMTEQGLREVSNPSAIF 287 D ++L + R + K R + + + +T++G+ V + S +F Sbjct: 176 VADGVIILRYVRPDQLRDVKLAVEVVKMRRHKHSRSIKPYEITDEGI-AVHSESEVF 231 >UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12XV7_METBU Length = 301 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQ-QMKTLYVTGEE 132 + R STG D +L GGV GS++++ G PG GK+TL +Q L + + K L+ + EE Sbjct: 59 IKRVSTGVAGLDDMLEGGVPKGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFEE 118 Query: 133 SLQQVAMRAHRLGLPTD--------NLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184 + Q+ R G + +S + E+I I E +P+ +V DS+ V Sbjct: 119 RIPQLIQHFMRFGWDLGSHIDDGYLEIFGMSMLTFEEIGEIIETYKPQRIVFDSLNVFT- 177 Query: 185 ADVQSSPGSVAQVRETAA--YLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVL 242 + R++ + L + K + +V + D + Sbjct: 178 --------DPEEFRKSISWRSLHKLLKKLNITTFLVTEKENGMEKKVYDKYDFVGDGIIF 229 Query: 243 LDGDADSRFR-----TLRSHKNRFGAVNELG-VFAMTEQGLREVSNPSAIFLSRGDEVTS 296 LD + L K R V+ F T++G+ + + + + + Sbjct: 230 LDKMQINEVEPTLTPVLAVQKMRATKVDTTPQPFRFTDKGISKYRTVNLMANKLQERMDV 289 Query: 297 GSSVM 301 S Sbjct: 290 ARSSS 294 >UniRef50_A9W785 Non-specific serine/threonine protein kinase n=12 Tax=Bacteria RepID=A9W785_METEP Length = 520 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 109/324 (33%), Gaps = 35/324 (10%) Query: 49 ERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGK 108 S A S + + + R STG D VL GG+ P L+ G PG GK Sbjct: 2 GHNSTGAASEPMNEAMSTTSTRSGSETRISTGISGLDEVLCGGLTPDRLYLLEGTPGTGK 61 Query: 109 STLLLQTLCKL-AQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETS--------- 158 +TL LQ L + A++ ++LYVT E+ ++ A G D + + + Sbjct: 62 TTLALQFLLEGAARKGRSLYVTLSETADELRAAALSHGWSLDGIELYELVNEMGLDPDSE 121 Query: 159 --------------IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYL 204 + ++ E +P+ +V DS+ + + + + R L Sbjct: 122 QSILHPSEIELGETVREVMARVESLKPERVVFDSLSELRL-----LAQNPLRYRRQILAL 176 Query: 205 TRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRF-GA 263 +F R ++M+ T + + H + + S R LR K R Sbjct: 177 KQFFAKRACTVLMLDDRTSEAGDLQLHSIAHGVISLDQNPREFGSERRRLRIVKMRGIKF 236 Query: 264 VNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMM 323 F + G++ P I + E L + + ++ Sbjct: 237 RGGYHDFVLETGGVQVF--PRLIAAEHRATFDPTAQSTGSDELDLLLGGGLVPGTNTLLL 294 Query: 324 ANPRRVAVGLEQNRLAILLAVLHR 347 VG L +LA L R Sbjct: 295 GPS---GVGKTTTGLRCMLAALER 315 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 106/290 (36%), Gaps = 25/290 (8%) Query: 38 RLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSA 97 ++ + G ++ + + STG E D +LGGG+VPG+ Sbjct: 231 MRGIKFRGGYHDFVLETGGVQVFPRLIAAEHRATFDPTAQSTGSDELDLLLGGGLVPGTN 290 Query: 98 ILIGGNPGAGKSTLLLQ-TLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTD------N 150 L+ G G GK+T L+ L L + Y +E L + RA LG+ Sbjct: 291 TLLLGPSGVGKTTTGLRCMLAALERGETATYYLFDEGLATMIARATLLGMDLRPHLGTGR 350 Query: 151 LNMLSETSIEQ--------ICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAA 202 L ++ E + EE + +DS+ ++ + + Q+ E Sbjct: 351 LTIMQIDPAELSPGEFAAIVRQAVEERGSTFVAVDSLNA-YLHAMPGEEHLILQMHE--- 406 Query: 203 YLTRFAKTRGVAIVMV-GHVTKDGSLAGPKVLEHCIDCSVLLD-GDADSRFRT-LRSHKN 259 L + +GV ++V G G + L + DC +L +A RT L K+ Sbjct: 407 -LLSYLNQKGVTTLLVLGQHGVIGEVRTDIDLSYLSDCILLFRFFEASGEIRTALSVVKS 465 Query: 260 RFGAVNE-LGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTR 308 R + ++ GLR V + F + + + + +G R Sbjct: 466 RVNPHERTIRELRLSTDGLR-VGEALSDFEGVLTGLPAYRGRVEMLKGPR 514 >UniRef50_A8I6M1 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I6M1_CHLRE Length = 536 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 140/354 (39%), Gaps = 130/354 (36%) Query: 86 RVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLG 145 +VLGGGVVPG+ +L+GG+PG GKST+ LQ V Sbjct: 208 QVLGGGVVPGALVLLGGDPGVGKSTITLQV-----------------RPDAV-------- 242 Query: 146 LPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205 V+DSI +++ + +PG+V Q+RE L Sbjct: 243 -----------------------------VMDSINTVYLGSLPQAPGTVTQIRECGQLLL 273 Query: 206 RFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVN 265 R AK +A+ ++GH + + D +G AD + Sbjct: 274 RLAKDHRIALFIIGH-------SALFLESRMADA----EGGADG-----------ADDLA 311 Query: 266 ELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH----- 320 V +T QG R + LVE+QALV Sbjct: 312 ASSVVGVTMQGSRAI------------------------------LVEVQALVSPLGERA 341 Query: 321 --SMMANPRRVAVGLEQNRLAILLAVLHRHG-GLQMADQDVFVNVVGGVKVTETSADLAL 377 + A R A G+++ RLA L A+L +H L++A+ V VNV V + ++DLA+ Sbjct: 342 AAAASALSYRSATGVDKGRLATLCAILDKHVPTLELANCSVIVNV-----VRDVASDLAI 396 Query: 378 LLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPA 431 +A+ +S + +P+DL V GE R+ EAAK GFRR ++P Sbjct: 397 AVAVAASYYNVAVPRDLAVCGE-----------RLDVRVREAAKLGFRRVVIPR 439 >UniRef50_D2LZH6 Putative circadian clock protein, KaiC n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZH6_BACS4 Length = 476 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 28/265 (10%) Query: 77 FSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC--KLAQQMKTLYVTGEESL 134 ++G + D +L GG GS+IL+ G PG GK+ L +Q L L +Y+T EE Sbjct: 5 TTSGIEGLDYILNGGFPTGSSILLEGAPGTGKTILGMQFLYDGALNNNESGIYITFEEFP 64 Query: 135 QQVAMRAHRLGLPTDNLN---------MLSETSIEQI-------CLIAEEEQPKLMVIDS 178 Q+ G +L + + +EQ+ + +E K +VIDS Sbjct: 65 DQIYNDMDSFGWDIKSLEKENKLRVICISPDVLLEQMKKSNGIFDQVIKEINCKRIVIDS 124 Query: 179 IQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCID 238 + + + + R+ + + ++ +++ T P + + +D Sbjct: 125 LSLFSFG-----MENQKEARDNIYTIRNILRKHRLSSILIHEQTNKSEEEIP-FVSYVLD 178 Query: 239 CSVLLDGDADS---RFRTLRSHKNRFGAVNE-LGVFAMTEQGLREVSNPSAIFLSRGDEV 294 + L R RTL K R + E ++ + G+ + + S + Sbjct: 179 GVIRLSLQGHHTIYRKRTLEVLKMRGCCIKEGEHIYRINNAGIDLIPSLSMVEDKAITLH 238 Query: 295 TSGSSVMVVWEGTRPLLVEIQALVD 319 + V R LL IQ Sbjct: 239 EDTTISTGVPALDRLLLGGIQKGTS 263 >UniRef50_B7PSX0 Lon protease homolog n=1 Tax=Ixodes scapularis RepID=B7PSX0_IXOSC Length = 832 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 71/458 (15%), Positives = 136/458 (29%), Gaps = 96/458 (20%) Query: 94 PGSAILIGGNPGAGKSTLLLQTLCKLAQ--------------QMKTLYVTGEESLQQVAM 139 G + G PG GK+++ L + + Y+ ++ Sbjct: 362 KGPILCFVGPPGVGKTSVGRSIARSLGREISLGGVSDQADVRGHRRTYIGSM--PGRIIQ 419 Query: 140 RAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVM-HMADVQSSPGSVAQV- 197 +G+ + + +L E + + L V+D Q + + P ++ V Sbjct: 420 GLRTVGVK-NPVFLLDEIDKMTPGIHGDPAAALLEVLDPEQNCAFIDHYLNIPYDLSNVL 478 Query: 198 -----------------RETAAY-----------------LTRFAKTRGVAIVMVGHVT- 222 R L R K G+ M VT Sbjct: 479 FIATANTLATIPAALLDRMEVIAVAGYTHEEKNHIARNHLLPRQLKEHGITNDM-MQVTD 537 Query: 223 --------KDGSLAGPKVLE--------HCIDCSVLLDG-----DADSRFRTLRSHKN-R 260 K AG + LE V + + S+ L + Sbjct: 538 DAISKLVVKYTREAGVRTLERKIGALCRAVAVKIVEKENLSDLAEEASQEPVLNVSTSVT 597 Query: 261 FGAVNELGVFAMTEQGLREVSNPSAIFL-SRGDEVTSGSSVMVVWEGTRPLLVEIQALVD 319 + E + ++ P L + G +V + W ++ ++A Sbjct: 598 VAPHPPSLPIVIDEVAVEDILGPPLYDLEMDSRLLQPGVAVGLAWTVAGGEIMFVEASRM 657 Query: 320 HSMMANPRRVAVG-LEQNRLAILLAVLHRHGGLQ----------MADQDVFVNVVGG-VK 367 +G + + + L L H M DV V+ G V Sbjct: 658 EGDGQLVLTGQLGDVMKESAKLALNWLRIHADKFSIPVQRGADLMEGTDVHVHFPAGAVC 717 Query: 368 VTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRA 427 SA + ++ +VS R + D+ + GE+ L G + PV ++++ A + G + Sbjct: 718 KDGPSAGVTIVTVLVSLFTGRTVLPDVAMTGEITLQGLVLPVGGIKDKVLAAHRAGMCKV 777 Query: 428 IVPAAN------VPKKAPEGMQIFGVKKLSDALSVFDD 459 I+P N VP+ + + V + + L + Sbjct: 778 ILPKRNKKDLQEVPQSVKDDLTFHLVTHIEEVLQHAFE 815 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.149 0.435 Lambda K H 0.267 0.0460 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,945,731,072 Number of Sequences: 3077464 Number of extensions: 140271306 Number of successful extensions: 611827 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2343 Number of HSP's successfully gapped in prelim test: 3269 Number of HSP's that attempted gapping in prelim test: 603247 Number of HSP's gapped (non-prelim): 7601 length of query: 460 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 328 effective length of database: 634,171,108 effective search space: 208008123424 effective search space used: 208008123424 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 95 (41.0 bits)