56 c1vmaA_ Probab=98.13   E-value=0.00011  Score=53.45  Aligned_columns=125  Identities=18%

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEECCC----CHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHH--
Q ss_conf             761899973898889899999999843-899499997269----9999999999829981013770678999999999--
Q batch____        94 PGSAILIGGNPGAGKSTLLLQTLCKLA-QQMKTLYVTGEE----SLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIA--  166 (460)
Q Consensus        94 ~G~viLI~G~PGvGKTtLalqiA~~la-~g~~vlyvsgEe----s~~qI~~ra~rlg~~~~~l~l~~e~~l~~i~~~i--  166 (460)
                      +..++++.||+|+||||.+..+|..+. +|.+++.++..-    ..+|++..++++++..  .......++..+....  
T Consensus        91 ~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~--~~~~~~~~~~~~~~~~~~  168 (294)
T c1vmaA_          91 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDAVA  168 (294)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEE--EECCCCCCHHHHHHHHHH
T ss_conf             966999980688760248999999999679948999758768647999999997619828--974883698999999999


Q ss_pred             --HHHCCCEEEEC-----------------------------CHHHHCCCCCCCCCCCHHHHHHHHHH------------
Q ss_conf             --85099799986-----------------------------77673133336676758999999999------------
Q batch____       167 --EEEQPKLMVID-----------------------------SIQVMHMADVQSSPGSVAQVRETAAY------------  203 (460)
Q Consensus       167 --~~~~~~liVID-----------------------------siqtl~~~~~~~~~~~~sqVr~~~~~------------  203 (460)
                        ...+.++++||                             +...++.-+....+.+..++......            
T Consensus       169 ~~~~~~~d~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~iIlTKlD  248 (294)
T c1vmaA_         169 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLD  248 (294)
T ss_dssp             HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             99977998999818889878579999999999996303566885399981146878999999999630899769997444


Q ss_pred             -------HHHHHHHCCCCEEEEEE
Q ss_conf             -------99999981996999975
Q batch____       204 -------LTRFAKTRGVAIVMVGH  220 (460)
Q Consensus       204 -------L~~lAK~~~i~vilv~h  220 (460)
                             +..++...+.|+..+++
T Consensus       249 e~~~~G~~l~~~~~~~~Pi~~i~~  272 (294)
T c1vmaA_         249 GTAKGGITLAIARELGIPIKFIGV  272 (294)
T ss_dssp             GCSCTTHHHHHHHHHCCCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf             788557999999985798899965