Phyre 2 Results for P45421

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Email | l.a.kelley@imperial.ac.uk
Description | P45421
Date | Thu Jan 5 12:02:34 GMT 2012
Unique Job ID | efa9b02336edc441

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2w07B_
Top template information
PDB header:cell adhesion Chain: B: PDB Molecule:minor pilin subunit papf; PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf
Confidence and coverage
Confidence: | 94.8% | Coverage: | 43%
78 residues ( 43% of your sequence) have been modelled with 94.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 52% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

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Sequence |  | M | K | R | I | I | T | G | C | L | L | L | N | F | A | M | A | A | Q | A | E | C | N | I | S | S | S | I | Q | N | I | D | Y | G | K | R | S | A | A | M | R | Q | V | D | R | G | K | T | T | Q | L | A | D | R | T | I | T | L | V | M | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  | ? |  | ? | ? | ? | ? | ? |  |  |  | ? |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Sequence |  | C | D | Q | D | A | H | I | R | V | Q | L | N | T | A | N | I | S | N | N | G | F | G | F | G | P | N | G | S | L | N | L | I | A | S | D | A | F | S | G | S | N | N | L | D | L | A | L | A | S | G | K | N | D | N | P | G | S | T | G | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | S | I | S | T | S | P | N | N | W | L | V | F | M | Q | N | G | Q | E | V | V | I | D | S | G | K | S | V | S | L | T | L | T | M | A | P | A | F | K | D | E | G | E | L | T | D | M | T | D | I | T | G | N | L | T | V | L | V | E | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | .
Sequence |  | K
Secondary structure |  |
SS confidence |  |
Disorder |  | ?
Disorder confidence |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2w07B_ |

### PDB 2w07 chain B

Region: 21 - 106
Aligned: 78
Modelled: 86
Confidence: 94.8%
Identity: 19%
PDB header:cell adhesion
Chain: B: PDB Molecule:minor pilin subunit papf;
PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf

Phyre2
2 |
| c3bfwA_ |

### PDB 3bfw chain A

Region: 18 - 125
Aligned: 104
Modelled: 108
Confidence: 94.7%
Identity: 15%
PDB header:structural protein/structural protein
Chain: A: PDB Molecule:protein fimg;
PDBTitle: crystal structure of truncated fimg (fimgt) in complex with the donor2 strand peptide of fimf (dsf)

Phyre2
3 |
| c3jwnK_ |

### PDB 3jwn chain K

Region: 21 - 106
Aligned: 81
Modelled: 86
Confidence: 94.1%
Identity: 17%
PDB header:protein binding/cell adhesion
Chain: K: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
4 |
| c1klfP_ |

### PDB 1klf chain P

Region: 21 - 106
Aligned: 69
Modelled: 72
Confidence: 93.9%
Identity: 13%
PDB header:chaperone/adhesin complex
Chain: P: PDB Molecule:fimh protein;
PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose

Phyre2
5 |
| c3jwnE_ |

### PDB 3jwn chain E

Region: 21 - 126
Aligned: 101
Modelled: 106
Confidence: 93.8%
Identity: 16%
PDB header:protein binding/cell adhesion
Chain: E: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
6 |
| d1ze3h1 |

### PDB 1ze3 chain H domain 1

Region: 21 - 106
Aligned: 69
Modelled: 69
Confidence: 93.3%
Identity: 12%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
7 |
| c3jwnL_ |

### PDB 3jwn chain L

Region: 21 - 126
Aligned: 103
Modelled: 106
Confidence: 93.3%
Identity: 17%
PDB header:protein binding/cell adhesion
Chain: L: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
8 |
| c3jwnF_ |

### PDB 3jwn chain F

Region: 21 - 126
Aligned: 103
Modelled: 106
Confidence: 92.9%
Identity: 17%
PDB header:protein binding/cell adhesion
Chain: F: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
9 |
| d1n12a_ |

### PDB 1n12 chain A

Region: 21 - 155
Aligned: 123
Modelled: 135
Confidence: 87.9%
Identity: 14%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
10 |
| c2jtyA_ |

### PDB 2jty chain A

Region: 21 - 125
Aligned: 100
Modelled: 105
Confidence: 77.9%
Identity: 14%
PDB header:structural protein
Chain: A: PDB Molecule:type-1 fimbrial protein, a chain;
PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus

Phyre2
11 |
| d2uy6b1 |

### PDB 2uy6 chain B domain 1

Region: 21 - 125
Aligned: 101
Modelled: 101
Confidence: 70.7%
Identity: 13%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
12 |
| d2j2zb1 |

### PDB 2j2z chain B domain 1

Region: 21 - 123
Aligned: 97
Modelled: 97
Confidence: 65.5%
Identity: 15%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
13 |
| d1pdkb_ |

### PDB 1pdk chain B

Region: 18 - 88
Aligned: 68
Modelled: 71
Confidence: 60.7%
Identity: 9%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
14 |
| c2wmpB_ |

### PDB 2wmp chain B

Region: 19 - 78
Aligned: 52
Modelled: 60
Confidence: 47.1%
Identity: 25%
PDB header:chaperone
Chain: B: PDB Molecule:papg protein;
PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin

Phyre2
15 |
| c2vsvB_ |

### PDB 2vsv chain B

Region: 63 - 147
Aligned: 58
Modelled: 85
Confidence: 41.4%
Identity: 14%
PDB header:protein-binding
Chain: B: PDB Molecule:rhophilin-2;
PDBTitle: crystal structure of the pdz domain of human rhophilin-2

Phyre2
16 |
| c3qbtH_ |

### PDB 3qbt chain H

Region: 22 - 69
Aligned: 38
Modelled: 48
Confidence: 34.1%
Identity: 11%
PDB header:protein transport/hydrolase
Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1;
PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp

Phyre2
17 |
| d1r6ja_ |

### PDB 1r6j chain A

Region: 63 - 158
Aligned: 67
Modelled: 81
Confidence: 29.6%
Identity: 28%
Fold: PDZ domain-like
Superfamily: PDZ domain-like
Family: PDZ domain

Phyre2
18 |
| c1r6jA_ |

### PDB 1r6j chain A

Region: 63 - 158
Aligned: 67
Modelled: 81
Confidence: 29.6%
Identity: 28%
PDB header:membrane protein
Chain: A: PDB Molecule:syntenin 1;
PDBTitle: ultrahigh resolution crystal structure of syntenin pdz2

Phyre2
19 |
| c1nteA_ |

### PDB 1nte chain A

Region: 63 - 158
Aligned: 67
Modelled: 81
Confidence: 29.6%
Identity: 28%
PDB header:signaling protein
Chain: A: PDB Molecule:syntenin 1;
PDBTitle: crystal structure analysis of the second pdz domain of2 syntenin

Phyre2
20 |
| c3khfA_ |

### PDB 3khf chain A

Region: 78 - 164
Aligned: 76
Modelled: 87
Confidence: 21.2%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:microtubule-associated serine/threonine-protein
PDBTitle: the crystal structure of the pdz domain of human microtubule2 associated serine/threonine kinase 3 (mast3)

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2w07B_ |
|  | 94.8 | 19 | PDB header:cell adhesion Chain: B: PDB Molecule:minor pilin subunit papf; PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf
2 | c3bfwA_ |
|  | 94.7 | 15 | PDB header:structural protein/structural protein Chain: A: PDB Molecule:protein fimg; PDBTitle: crystal structure of truncated fimg (fimgt) in complex with the donor2 strand peptide of fimf (dsf)
3 | c3jwnK_ |
|  | 94.1 | 17 | PDB header:protein binding/cell adhesion Chain: K: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
4 | c1klfP_ |
|  | 93.9 | 13 | PDB header:chaperone/adhesin complex Chain: P: PDB Molecule:fimh protein; PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose
5 | c3jwnE_ |
|  | 93.8 | 16 | PDB header:protein binding/cell adhesion Chain: E: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
6 | d1ze3h1 |
|  | 93.3 | 12 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
7 | c3jwnL_ |
|  | 93.3 | 17 | PDB header:protein binding/cell adhesion Chain: L: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
8 | c3jwnF_ |
|  | 92.9 | 17 | PDB header:protein binding/cell adhesion Chain: F: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
9 | d1n12a_ |
|  | 87.9 | 14 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
10 | c2jtyA_ |
|  | 77.9 | 14 | PDB header:structural protein Chain: A: PDB Molecule:type-1 fimbrial protein, a chain; PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus
11 | d2uy6b1 |
|  | 70.7 | 13 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
12 | d2j2zb1 |
|  | 65.5 | 15 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
13 | d1pdkb_ |
|  | 60.7 | 9 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
14 | c2wmpB_ |
|  | 47.1 | 25 | PDB header:chaperone Chain: B: PDB Molecule:papg protein; PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin
15 | c2vsvB_ |
|  | 41.4 | 14 | PDB header:protein-binding Chain: B: PDB Molecule:rhophilin-2; PDBTitle: crystal structure of the pdz domain of human rhophilin-2
16 | c3qbtH_ |
|  | 34.1 | 11 | PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp
17 | d1r6ja_ |
|  | 29.6 | 28 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
18 | c1r6jA_ |
|  | 29.6 | 28 | PDB header:membrane protein Chain: A: PDB Molecule:syntenin 1; PDBTitle: ultrahigh resolution crystal structure of syntenin pdz2
19 | c1nteA_ |
|  | 29.6 | 28 | PDB header:signaling protein Chain: A: PDB Molecule:syntenin 1; PDBTitle: crystal structure analysis of the second pdz domain of2 syntenin
20 | c3khfA_ |
|  | 21.2 | 16 | PDB header:transferase Chain: A: PDB Molecule:microtubule-associated serine/threonine-protein PDBTitle: the crystal structure of the pdz domain of human microtubule2 associated serine/threonine kinase 3 (mast3)
21 | c2kjmA_ |
| not modelled | 18.4 | 50 | PDB header:rna binding protein Chain: A: PDB Molecule:histone rna hairpin-binding protein; PDBTitle: solution structure of slbp rna binding domain fragment
22 | c3qglD_ |
| not modelled | 17.8 | 16 | PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3
23 | d1eaqa_ |
| not modelled | 16.5 | 55 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:RUNT domain
24 | d1ljma_ |
| not modelled | 16.0 | 55 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:RUNT domain
25 | c1y7nA_ |
| not modelled | 15.9 | 22 | PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the second pdz domain of the human2 neuronal adaptor x11alpha
26 | d1ry4a_ |
| not modelled | 11.8 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
27 | c3l4fD_ |
| not modelled | 10.9 | 18 | PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex
28 | d1auua_ |
| not modelled | 10.6 | 25 | Fold:GroES-like Superfamily:SacY-like RNA-binding domain Family:BglG-like antiterminator proteins
29 | c1u39A_ |
| not modelled | 10.2 | 16 | PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains
30 | d1hcza1 |
| not modelled | 10.1 | 20 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain
31 | d2oz4a1 |
| not modelled | 9.9 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C2 set domains
32 | c2jtvA_ |
| not modelled | 9.9 | 22 | PDB header:structural genomics Chain: A: PDB Molecule:protein of unknown function; PDBTitle: solution structure of protein rpa3401, northeast structural genomics2 consortium target rpt7, ontario center for structural proteomics3 target rp3384
33 | d1uf1a_ |
| not modelled | 9.8 | 12 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
34 | c7mdhA_ |
| not modelled | 9.3 | 10 | PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form
35 | c2eaqA_ |
| not modelled | 9.3 | 13 | PDB header:metal binding protein Chain: A: PDB Molecule:lim domain only protein 7; PDBTitle: crystal structure of pdz domain of kiaa0858 (lim), ms07932 from homo sapiens
36 | d1b8pa2 |
| not modelled | 9.0 | 10 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
37 | c2yzyA_ |
| not modelled | 8.9 | 8 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1012; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8
38 | d1kwaa_ |
| not modelled | 8.5 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
39 | d1yq2a3 |
| not modelled | 8.3 | 29 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain
40 | d1y7na1 |
| not modelled | 8.1 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
41 | c2k8pA_ |
| not modelled | 8.0 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:sclerostin; PDBTitle: characterisation of the structural features and2 interactions of sclerostin: molecular insight into a key3 regulator of wnt-mediated bone formation
42 | d7mdha2 |
| not modelled | 8.0 | 10 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
43 | d1wioa2 |
| not modelled | 7.4 | 43 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
44 | c2z17A_ |
| not modelled | 7.3 | 17 | PDB header:protein binding Chain: A: PDB Molecule:pleckstrin homology sec7 and coiled-coil domains- PDBTitle: crystal sturcture of pdz domain from human pleckstrin2 homology, sec7
45 | d1civa2 |
| not modelled | 7.3 | 9 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
46 | d1jz8a3 |
| not modelled | 7.3 | 11 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain
47 | c2d8iA_ |
| not modelled | 7.2 | 16 | PDB header:immune system, signaling protein Chain: A: PDB Molecule:t-cell lymphoma invasion and metastasis 1 PDBTitle: solution structure of the pdz domain of t-cell lymphoma2 invasion and metastasis 1 varian
48 | c2w95B_ |
| not modelled | 7.1 | 12 | PDB header:cell adhesion Chain: B: PDB Molecule:discoidin-1 subunit a; PDBTitle: structure of the discoidin i from dictyostelium discoideum2 in complex with galnac at 1.75 angstrom resolution
49 | c2fc6A_ |
| not modelled | 6.9 | 27 | PDB header:transcription Chain: A: PDB Molecule:target of egr1, member 1; PDBTitle: solution structure of the zf-ccch domain of target of egr1,2 member 1 (nuclear)
50 | c2jmrA_ |
| not modelled | 6.8 | 13 | PDB header:cell adhesion Chain: A: PDB Molecule:fimf; PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf
51 | d2fc6a1 |
| not modelled | 6.4 | 44 | Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger
52 | c2kv8A_ |
| not modelled | 6.3 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 12; PDBTitle: solution structure ofrgs12 pdz domain
53 | d1gv0a2 |
| not modelled | 6.2 | 8 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
54 | c1wziA_ |
| not modelled | 6.1 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for alteration of cofactor specificity of2 malate dehydrogenase from thermus flavus
55 | d1be9a_ |
| not modelled | 6.0 | 13 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
56 | d1y7ta2 |
| not modelled | 5.9 | 14 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
57 | d2zjrp1 |
| not modelled | 5.7 | 15 | Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22
58 | c2xzzA_ |
| not modelled | 5.6 | 10 | PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase k; PDBTitle: crystal structure of the human transglutaminase 1 beta-barrel domain
59 | c2nncB_ |
| not modelled | 5.4 | 10 | PDB header:ligand binding protein Chain: B: PDB Molecule:sulfur covalently-binding protein; PDBTitle: structure of the sulfur carrier protein soxy from chlorobium limicola2 f thiosulfatophilum
60 | c1b8vA_ |
| not modelled | 5.3 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: malate dehydrogenase from aquaspirillum arcticum
61 | d1hyha2 |
| not modelled | 5.1 | 15 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
62 | c1xt5A_ |
| not modelled | 5.1 | 4 | PDB header:immune system Chain: A: PDB Molecule:variable region-containing chitin-binding PDBTitle: crystal structure of vcbp3, domain 1, from branchiostoma2 floridae

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0