Phyre 2 Results for Q9JMT6

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Email | l.a.kelley@imperial.ac.uk
Description | Q9JMT6
Date | Thu Jan 5 12:38:11 GMT 2012
Unique Job ID | eedd3504c01ea6de

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template d2f9ca1
Top template information
Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like
Confidence and coverage
Confidence: | 68.3% | Coverage: | 48%
89 residues ( 48% of your sequence) have been modelled with 68.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | A | Y | C | P | H | Y | Q | F | M | L | F | W | I | A | S | L | C | W | F | S | L | I | V | L | W | G | T | G | F | Y | S | L | L | F | Y | I | I | S | V | L | L | I | I | I | L | Y | T | L | Y | F | I | G | E | N | M | F | S | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | K | I | K | E | S | D | S | T | T | T | I | I | S | K | N | T | S | F | V | G | D | I | S | S | G | E | K | I | I | I | H | G | K | I | N | G | N | I | N | T | N | N | G | V | V | F | I | D | K | G | G | V | V | N | G | R | V | L | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | K | M | I | L | N | G | E | L | Y | G | E | C | C | C | S | T | L | D | V | Y | E | N | G | F | L | Q | G | E | V | S | Y | R | F | L | E | I | R | N | G | G | C | I | T | G | I | V | N | K | V | T | D | E | V | Q | N | N | V | S | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | .
Sequence |  | L | V | K | A | R | E | S
Secondary structure |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2f9ca1 |

### PDB 2f9c chain A domain 1

Region: 71 - 160
Aligned: 89
Modelled: 89
Confidence: 68.3%
Identity: 17%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: YdcK-like

Phyre2
2 |
| c1fwyA_ |

### PDB 1fwy chain A

Region: 71 - 125
Aligned: 53
Modelled: 55
Confidence: 54.2%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac

Phyre2
3 |
| c1hf2A_ |

### PDB 1hf2 chain A

Region: 81 - 101
Aligned: 21
Modelled: 21
Confidence: 46.1%
Identity: 33%
PDB header:cell division protein
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima

Phyre2
4 |
| c2i5kB_ |

### PDB 2i5k chain B

Region: 77 - 125
Aligned: 48
Modelled: 49
Confidence: 43.3%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of ugp1p

Phyre2
5 |
| d1hf2a1 |

### PDB 1hf2 chain A domain 1

Region: 81 - 101
Aligned: 21
Modelled: 21
Confidence: 41.7%
Identity: 33%
Fold: Single-stranded right-handed beta-helix
Superfamily: Cell-division inhibitor MinC, C-terminal domain
Family: Cell-division inhibitor MinC, C-terminal domain

Phyre2
6 |
| c3mc4A_ |

### PDB 3mc4 chain A

Region: 106 - 163
Aligned: 58
Modelled: 58
Confidence: 36.2%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase
PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis

Phyre2
7 |
| c1hm8A_ |

### PDB 1hm8 chain A

Region: 68 - 186
Aligned: 109
Modelled: 118
Confidence: 32.6%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase;
PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a

Phyre2
8 |
| d1o12a1 |

### PDB 1o12 chain A domain 1

Region: 91 - 107
Aligned: 17
Modelled: 17
Confidence: 30.5%
Identity: 24%
Fold: Composite domain of metallo-dependent hydrolases
Superfamily: Composite domain of metallo-dependent hydrolases
Family: N-acetylglucosamine-6-phosphate deacetylase, NagA

Phyre2
9 |
| d2icya1 |

### PDB 2icy chain A domain 1

Region: 77 - 118
Aligned: 41
Modelled: 42
Confidence: 30.0%
Identity: 22%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: GlmU C-terminal domain-like

Phyre2
10 |
| c2qkxA_ |

### PDB 2qkx chain A

Region: 71 - 163
Aligned: 87
Modelled: 90
Confidence: 28.9%
Identity: 8%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate

Phyre2
11 |
| c3b8eC_ |

### PDB 3b8e chain C

Region: 4 - 135
Aligned: 131
Modelled: 131
Confidence: 28.7%
Identity: 15%
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit
PDBTitle: crystal structure of the sodium-potassium pump

Phyre2
12 |
| c2i5nH_ |

### PDB 2i5n chain H

Region: 3 - 22
Aligned: 20
Modelled: 20
Confidence: 28.6%
Identity: 15%
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique

Phyre2
13 |
| c3brkX_ |

### PDB 3brk chain X

Region: 110 - 167
Aligned: 58
Modelled: 58
Confidence: 27.8%
Identity: 16%
PDB header:transferase
Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase;
PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens

Phyre2
14 |
| c3d98A_ |

### PDB 3d98 chain A

Region: 71 - 163
Aligned: 87
Modelled: 90
Confidence: 26.5%
Identity: 9%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form

Phyre2
15 |
| c2zxeA_ |

### PDB 2zxe chain A

Region: 5 - 135
Aligned: 130
Modelled: 129
Confidence: 25.3%
Identity: 13%
PDB header:hydrolase/transport protein
Chain: A: PDB Molecule:na, k-atpase alpha subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state

Phyre2
16 |
| c3f1xA_ |

### PDB 3f1x chain A

Region: 106 - 164
Aligned: 59
Modelled: 59
Confidence: 20.4%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:serine acetyltransferase;
PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62.

Phyre2
17 |
| d1jk9b1 |

### PDB 1jk9 chain B domain 1

Region: 64 - 112
Aligned: 49
Modelled: 49
Confidence: 20.0%
Identity: 27%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Cu,Zn superoxide dismutase-like
Family: Cu,Zn superoxide dismutase-like

Phyre2
18 |
| c2z8gB_ |

### PDB 2z8g chain B

Region: 52 - 128
Aligned: 77
Modelled: 77
Confidence: 18.9%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:isopullulanase;
PDBTitle: aspergillus niger atcc9642 isopullulanase complexed with isopanose

Phyre2
19 |
| d1ogmx2 |

### PDB 1ogm chain X domain 2

Region: 63 - 148
Aligned: 74
Modelled: 86
Confidence: 16.9%
Identity: 18%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Dextranase, catalytic domain

Phyre2
20 |
| c3mk7F_ |

### PDB 3mk7 chain F

Region: 9 - 32
Aligned: 24
Modelled: 24
Confidence: 15.6%
Identity: 25%
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2f9ca1 |
|  | 68.3 | 17 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like
2 | c1fwyA_ |
|  | 54.2 | 19 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac
3 | c1hf2A_ |
|  | 46.1 | 33 | PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima
4 | c2i5kB_ |
|  | 43.3 | 13 | PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p
5 | d1hf2a1 |
|  | 41.7 | 33 | Fold:Single-stranded right-handed beta-helix Superfamily:Cell-division inhibitor MinC, C-terminal domain Family:Cell-division inhibitor MinC, C-terminal domain
6 | c3mc4A_ |
|  | 36.2 | 14 | PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis
7 | c1hm8A_ |
|  | 32.6 | 15 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
8 | d1o12a1 |
|  | 30.5 | 24 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
9 | d2icya1 |
|  | 30.0 | 22 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
10 | c2qkxA_ |
|  | 28.9 | 8 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
11 | c3b8eC_ |
|  | 28.7 | 15 | PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump
12 | c2i5nH_ |
|  | 28.6 | 15 | PDB header:photosynthesis Chain: H: PDB Molecule:reaction center protein h chain; PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
13 | c3brkX_ |
|  | 27.8 | 16 | PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens
14 | c3d98A_ |
|  | 26.5 | 9 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
15 | c2zxeA_ |
|  | 25.3 | 13 | PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
16 | c3f1xA_ |
|  | 20.4 | 19 | PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62.
17 | d1jk9b1 |
|  | 20.0 | 27 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like
18 | c2z8gB_ |
|  | 18.9 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:isopullulanase; PDBTitle: aspergillus niger atcc9642 isopullulanase complexed with isopanose
19 | d1ogmx2 |
|  | 16.9 | 18 | Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Dextranase, catalytic domain
20 | c3mk7F_ |
|  | 15.6 | 25 | PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase
21 | c3jx8B_ |
| not modelled | 15.1 | 20 | PDB header:cell adhesion Chain: B: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of putative lipid binding protein (yp_001304415.1)2 from parabacteroides distasonis atcc 8503 at 2.16 a resolution
22 | c1t5eB_ |
| not modelled | 14.8 | 22 | PDB header:transport protein Chain: B: PDB Molecule:multidrug resistance protein mexa; PDBTitle: the structure of mexa
23 | c3gueB_ |
| not modelled | 14.2 | 16 | PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330)
24 | d1eysh2 |
| not modelled | 14.1 | 26 | Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region
25 | c2q4jB_ |
| not modelled | 14.0 | 22 | PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase
26 | c1k6nH_ |
| not modelled | 12.1 | 32 | PDB header:photosynthesis Chain: H: PDB Molecule:photosynthetic reaction center h subunit; PDBTitle: e(l212)a,d(l213)a double mutant structure of photosynthetic reaction2 center from rhodobacter sphaeroides
27 | c1ogoX_ |
| not modelled | 11.3 | 17 | PDB header:hydrolase Chain: X: PDB Molecule:dextranase; PDBTitle: dex49a from penicillium minioluteum complex with isomaltose
28 | c3kdpD_ |
| not modelled | 9.1 | 12 | PDB header:hydrolase Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1; PDBTitle: crystal structure of the sodium-potassium pump
29 | c2v0hA_ |
| not modelled | 8.8 | 11 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)
30 | c1eysH_ |
| not modelled | 8.8 | 26 | PDB header:electron transport Chain: H: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
31 | c3ixzA_ |
| not modelled | 8.3 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
32 | c2f1mA_ |
| not modelled | 8.2 | 20 | PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra
33 | d1ua7a1 |
| not modelled | 7.2 | 14 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
34 | c2aklA_ |
| not modelled | 6.6 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
35 | d2axtm1 |
| not modelled | 6.1 | 32 | Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein M, PsbM Family:PsbM-like
36 | d2vnud3 |
| not modelled | 5.7 | 21 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
37 | d2akka1 |
| not modelled | 5.7 | 19 | Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like
38 | d1srda_ |
| not modelled | 5.5 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0