 |
| Job Description | Q9JMT6 | | Confidence | 3.47% | Date | Thu Jan 5 12:38:11 GMT 2012 |
| Rank | 58 | Aligned Residues | 37 |
| % Identity | 22% | Template | c1h4uA_ |
| PDB info |
PDB header:extracellular matrix protein | Chain: A: PDB Molecule:nidogen-1; |
PDBTitle: domain g2 of mouse nidogen-1
|
| Resolution | 2.2 Å |
|
|   |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | S | S | G | E | K | I | I | I | H | G | K | I | N | G | N | I | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | N | N | G | V | V | F | I | D | K | G | G | V | V | N | G | R | V | L |
| Query Conservation |   |
|   |   |   |
|   |
|   |
|
|
|   |
|
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|   |
|
|   |   |
|   |
|   |
|   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |
|   |
|   |
|
|
|
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|
|
|
|
|
| Template Sequence |   |
V | A | E | G | S | P | Q | R | V | N | G | K | V | K | G | R | I | F | V | G | S | S | Q | V | P | V | V | F | E | N | T | D | L | H | S | Y | V | V | M | N | H | G | R | S | Y | T | A | I | S |
| Template Known Secondary structure |   |
 |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
396 | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|