Phyre 2 Results for P76141

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Email | l.a.kelley@imperial.ac.uk
Description | P76141
Date | Thu Jan 5 12:19:32 GMT 2012
Unique Job ID | eed8780467a22cdd

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2w48D_
Top template information
PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
Confidence and coverage
Confidence: | 100.0% | Coverage: | 94%
297 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | I | N | D | S | A | I | S | E | Q | G | M | C | E | E | E | Q | V | A | R | I | A | W | F | Y | Y | H | D | G | L | T | Q | S | E | I | S | D | R | L | G | L | T | R | L | K | V | S | R | L | L | E | K | G | H | Q | S | G | I | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | R | V | Q | I | N | S | R | F | E | G | C | L | E | Y | E | T | Q | L | R | R | Q | F | S | L | Q | H | V | R | V | I | P | G | L | A | D | A | D | V | G | G | R | L | G | I | G | A | A | H | M | L | M | S | L | L | Q | P | Q | Q | M | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | I | G | F | G | E | A | T | M | N | T | L | Q | R | L | S | G | F | I | S | S | Q | Q | I | R | L | V | T | L | S | G | G | V | G | S | Y | M | T | G | I | G | Q | L | N | A | A | C | S | V | N | I | I | P | A | P | L | R | A | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | D | I | A | R | T | L | K | N | E | N | C | V | K | D | V | L | L | A | A | Q | A | A | D | V | A | I | V | G | I | G | A | V | S | Q | Q | D | D | A | T | I | I | R | S | G | Y | I | S | Q | G | E | Q | L | M | I | G | R | K | G | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | G | D | I | L | G | Y | F | F | D | A | K | G | D | V | V | T | N | I | K | I | H | N | E | L | I | G | L | P | L | S | A | L | K | T | I | P | V | R | V | G | V | A | G | G | E | N | K | A | E | A | I | A | A | A | M | K | G | G | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | .
Sequence |  | I | N | A | L | V | T | D | Q | D | T | A | A | A | I | L | R | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2w48D_ |

### PDB 2w48 chain D

Region: 12 - 316
Aligned: 297
Modelled: 305
Confidence: 100.0%
Identity: 26%
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae

Phyre2
2 |
| c3kv1A_ |

### PDB 3kv1 chain A

Region: 72 - 316
Aligned: 241
Modelled: 245
Confidence: 100.0%
Identity: 23%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional repressor;
PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri

Phyre2
3 |
| c3nzeB_ |

### PDB 3nze chain B

Region: 66 - 315
Aligned: 248
Modelled: 250
Confidence: 100.0%
Identity: 21%
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.

Phyre2
4 |
| d2gnpa1 |

### PDB 2gnp chain A domain 1

Region: 66 - 316
Aligned: 247
Modelled: 251
Confidence: 100.0%
Identity: 21%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2
5 |
| d3efba1 |

### PDB 3efb chain A domain 1

Region: 70 - 316
Aligned: 235
Modelled: 247
Confidence: 100.0%
Identity: 26%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2
6 |
| d2okga1 |

### PDB 2okg chain A domain 1

Region: 67 - 316
Aligned: 240
Modelled: 250
Confidence: 100.0%
Identity: 25%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2
7 |
| c2o0mA_ |

### PDB 2o0m chain A

Region: 72 - 316
Aligned: 235
Modelled: 241
Confidence: 100.0%
Identity: 26%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, sorc family;
PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis

Phyre2
8 |
| d2o0ma1 |

### PDB 2o0m chain A domain 1

Region: 72 - 316
Aligned: 235
Modelled: 241
Confidence: 100.0%
Identity: 26%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2
9 |
| d2r5fa1 |

### PDB 2r5f chain A domain 1

Region: 71 - 314
Aligned: 205
Modelled: 224
Confidence: 100.0%
Identity: 33%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2
10 |
| c2bkxB_ |

### PDB 2bkx chain B

Region: 97 - 314
Aligned: 209
Modelled: 218
Confidence: 100.0%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily

Phyre2
11 |
| c2ri0B_ |

### PDB 2ri0 chain B

Region: 97 - 314
Aligned: 204
Modelled: 215
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans

Phyre2
12 |
| d1ne7a_ |

### PDB 1ne7 chain A

Region: 97 - 314
Aligned: 203
Modelled: 203
Confidence: 99.5%
Identity: 15%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: NagB-like

Phyre2
13 |
| c3hn6D_ |

### PDB 3hn6 chain D

Region: 97 - 314
Aligned: 203
Modelled: 203
Confidence: 99.4%
Identity: 13%
PDB header:isomerase
Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi

Phyre2
14 |
| d1fsfa_ |

### PDB 1fsf chain A

Region: 97 - 314
Aligned: 205
Modelled: 205
Confidence: 99.4%
Identity: 13%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: NagB-like

Phyre2
15 |
| c3e15D_ |

### PDB 3e15 chain D

Region: 70 - 302
Aligned: 221
Modelled: 233
Confidence: 99.3%
Identity: 14%
PDB header:hydrolase
Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: 6-phosphogluconolactonase from plasmodium vivax

Phyre2
16 |
| c2j0eA_ |

### PDB 2j0e chain A

Region: 97 - 314
Aligned: 198
Modelled: 203
Confidence: 99.2%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei

Phyre2
17 |
| c3nwpA_ |

### PDB 3nwp chain A

Region: 83 - 315
Aligned: 211
Modelled: 221
Confidence: 99.2%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution

Phyre2
18 |
| c3lwdA_ |

### PDB 3lwd chain A

Region: 95 - 317
Aligned: 200
Modelled: 223
Confidence: 99.1%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution

Phyre2
19 |
| c3icoA_ |

### PDB 3ico chain A

Region: 97 - 314
Aligned: 196
Modelled: 196
Confidence: 99.1%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis

Phyre2
20 |
| c3cssA_ |

### PDB 3css chain A

Region: 97 - 316
Aligned: 195
Modelled: 204
Confidence: 99.1%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis

Phyre2
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| c2elhA_ |

### PDB 2elh chain A

Region: 2 - 56
Aligned: 54
Modelled: 54
Confidence: 96.6%
Identity: 7%
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2w48D_ |
|  | 100.0 | 26 | PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
2 | c3kv1A_ |
|  | 100.0 | 23 | PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri
3 | c3nzeB_ |
|  | 100.0 | 21 | PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.
4 | d2gnpa1 |
|  | 100.0 | 21 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like
5 | d3efba1 |
|  | 100.0 | 26 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like
6 | d2okga1 |
|  | 100.0 | 25 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like
7 | c2o0mA_ |
|  | 100.0 | 26 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis
8 | d2o0ma1 |
|  | 100.0 | 26 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like
9 | d2r5fa1 |
|  | 100.0 | 33 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like
10 | c2bkxB_ |
|  | 100.0 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily
11 | c2ri0B_ |
|  | 100.0 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans
12 | d1ne7a_ |
|  | 99.5 | 15 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like
13 | c3hn6D_ |
|  | 99.4 | 13 | PDB header:isomerase Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi
14 | d1fsfa_ |
|  | 99.4 | 13 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like
15 | c3e15D_ |
|  | 99.3 | 14 | PDB header:hydrolase Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: 6-phosphogluconolactonase from plasmodium vivax
16 | c2j0eA_ |
|  | 99.2 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei
17 | c3nwpA_ |
|  | 99.2 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution
18 | c3lwdA_ |
|  | 99.1 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution
19 | c3icoA_ |
|  | 99.1 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis
20 | c3cssA_ |
|  | 99.1 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis
21 | c3oc6A_ |
| not modelled | 99.1 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form
22 | c1pbtA_ |
| not modelled | 99.0 | 12 | PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima
23 | d1vl1a_ |
| not modelled | 99.0 | 12 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like
24 | c1y89B_ |
| not modelled | 99.0 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein
25 | c3lhiA_ |
| not modelled | 99.0 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution
26 | c1rp3G_ |
| not modelled | 97.7 | 19 | PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm
27 | d1i5za1 |
| not modelled | 97.6 | 27 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
28 | d2bgca1 |
| not modelled | 97.6 | 23 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
29 | c3u7jA_ |
| not modelled | 97.6 | 15 | PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
30 | d1s7oa_ |
| not modelled | 97.6 | 25 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like
31 | d2oz6a1 |
| not modelled | 97.5 | 30 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
32 | d1xsva_ |
| not modelled | 97.5 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like
33 | d2gaua1 |
| not modelled | 97.4 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
34 | c3d0sA_ |
| not modelled | 97.4 | 35 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: camp receptor protein from m.tuberculosis, camp-free form
35 | d2d1ha1 |
| not modelled | 97.4 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like
36 | d2h6ca1 |
| not modelled | 97.4 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
37 | c3kccA_ |
| not modelled | 97.4 | 27 | PDB header:transcription Chain: A: PDB Molecule:catabolite gene activator; PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein
38 | c2gauA_ |
| not modelled | 97.4 | 15 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family; PDBTitle: crystal structure of transcriptional regulator, crp/fnr family from2 porphyromonas gingivalis (apc80792), structural genomics, mcsg
39 | d2coha1 |
| not modelled | 97.3 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
40 | c2bgcA_ |
| not modelled | 97.3 | 25 | PDB header:transcription Chain: A: PDB Molecule:prfa; PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes
41 | c2oz6A_ |
| not modelled | 97.3 | 30 | PDB header:dna binding protein Chain: A: PDB Molecule:virulence factor regulator; PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp
42 | c2o8xA_ |
| not modelled | 97.3 | 8 | PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
43 | c1zreB_ |
| not modelled | 97.3 | 27 | PDB header:gene regulation/dna Chain: B: PDB Molecule:catabolite gene activator; PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna
44 | d3e5ua1 |
| not modelled | 97.2 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
45 | d1k78a1 |
| not modelled | 97.2 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
46 | d1ft9a1 |
| not modelled | 97.2 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
47 | d1ku7a_ |
| not modelled | 97.2 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
48 | c3dv8A_ |
| not modelled | 97.2 | 24 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family; PDBTitle: crystal structure of a putative transcriptional regulator of the2 crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at3 2.55 a resolution
49 | c3hugA_ |
| not modelled | 97.2 | 19 | PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
50 | c3e6dA_ |
| not modelled | 97.2 | 27 | PDB header:transcription regulation Chain: A: PDB Molecule:cyclic nucleotide-binding protein; PDBTitle: crystal structure of cprk c200s
51 | d1rp3a2 |
| not modelled | 97.2 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
52 | c1zybA_ |
| not modelled | 97.2 | 24 | PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator, crp family; PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution
53 | c1or7A_ |
| not modelled | 97.1 | 17 | PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
54 | c1ft9A_ |
| not modelled | 97.1 | 28 | PDB header:transcription Chain: A: PDB Molecule:carbon monoxide oxidation system transcription PDBTitle: structure of the reduced (feii) co-sensing protein from r.2 rubrum
55 | c2zcwA_ |
| not modelled | 97.1 | 24 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, fnr/crp family; PDBTitle: crystal structure of ttha1359, a transcriptional regulator,2 crp/fnr family from thermus thermophilus hb8
56 | d1sfxa_ |
| not modelled | 97.1 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like
57 | c6paxA_ |
| not modelled | 97.1 | 22 | PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
58 | d6paxa1 |
| not modelled | 97.1 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
59 | c3mzyA_ |
| not modelled | 97.1 | 14 | PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
60 | c3tgnA_ |
| not modelled | 97.1 | 21 | PDB header:transcription Chain: A: PDB Molecule:adc operon repressor adcr; PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
61 | c3iwzB_ |
| not modelled | 97.1 | 21 | PDB header:transcription Chain: B: PDB Molecule:catabolite activation-like protein; PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris
62 | c3ctaA_ |
| not modelled | 97.0 | 26 | PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase; PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
63 | c3g3zA_ |
| not modelled | 97.0 | 18 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
64 | c2qwwB_ |
| not modelled | 97.0 | 18 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
65 | d1z05a1 |
| not modelled | 97.0 | 8 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain
66 | c1zx4B_ |
| not modelled | 97.0 | 30 | PDB header:translation Chain: B: PDB Molecule:plasmid partition par b protein; PDBTitle: structure of parb bound to dna
67 | d1ttya_ |
| not modelled | 97.0 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
68 | c3fx3A_ |
| not modelled | 97.0 | 22 | PDB header:camp-binding protein Chain: A: PDB Molecule:cyclic nucleotide-binding protein; PDBTitle: structure of a putative camp-binding regulatory protein from2 silicibacter pomeroyi dss-3
69 | c1u78A_ |
| not modelled | 97.0 | 15 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
70 | d1pdnc_ |
| not modelled | 97.0 | 20 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
71 | d1or7a1 |
| not modelled | 97.0 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
72 | d1ku9a_ |
| not modelled | 97.0 | 35 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DNA-binding protein Mj223
73 | c2fxaB_ |
| not modelled | 96.9 | 17 | PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
74 | c3nrvC_ |
| not modelled | 96.9 | 29 | PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
75 | c3la2A_ |
| not modelled | 96.9 | 30 | PDB header:transcription Chain: A: PDB Molecule:global nitrogen regulator; PDBTitle: crystal structure of ntca in complex with 2-oxoglutarate
76 | d1ku3a_ |
| not modelled | 96.9 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
77 | c3bddD_ |
| not modelled | 96.9 | 28 | PDB header:transcription Chain: D: PDB Molecule:regulatory protein marr; PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
78 | d2fxaa1 |
| not modelled | 96.9 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
79 | d3ctaa1 |
| not modelled | 96.9 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
80 | c3r0aB_ |
| not modelled | 96.9 | 18 | PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
81 | d1lnwa_ |
| not modelled | 96.9 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
82 | c3e97A_ |
| not modelled | 96.9 | 30 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family; PDBTitle: crystal structure of transcriptional regulator of crp/fnr2 family (yp_604437.1) from deinococcus geothermalis dsm3 11300 at 1.86 a resolution
83 | d2etha1 |
| not modelled | 96.8 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
84 | c3nqoB_ |
| not modelled | 96.8 | 17 | PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
85 | d2fbha1 |
| not modelled | 96.8 | 20 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
86 | c2nnnB_ |
| not modelled | 96.8 | 8 | PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
87 | c2it0A_ |
| not modelled | 96.8 | 20 | PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
88 | c2wteB_ |
| not modelled | 96.8 | 15 | PDB header:antiviral protein Chain: B: PDB Molecule:csa3; PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
89 | c2h09A_ |
| not modelled | 96.8 | 16 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
90 | c3deuB_ |
| not modelled | 96.8 | 15 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator slya; PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
91 | c1i1gA_ |
| not modelled | 96.8 | 11 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
92 | d3broa1 |
| not modelled | 96.8 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
93 | c2fa5B_ |
| not modelled | 96.8 | 29 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator marr/emrr family; PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
94 | c3hruA_ |
| not modelled | 96.8 | 11 | PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+
95 | d1lj9a_ |
| not modelled | 96.8 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
96 | c1z05A_ |
| not modelled | 96.7 | 6 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
97 | c1f5tA_ |
| not modelled | 96.7 | 16 | PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
98 | c2nyxB_ |
| not modelled | 96.7 | 10 | PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
99 | c3bpxB_ |
| not modelled | 96.7 | 20 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr
100 | c2zdbA_ |
| not modelled | 96.7 | 27 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, crp family; PDBTitle: crystal structure of tthb099, a transcriptional regulator crp family2 from thermus thermophilus hb8
101 | c2e7xA_ |
| not modelled | 96.7 | 18 | PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
102 | c2fmyB_ |
| not modelled | 96.7 | 44 | PDB header:dna binding protein Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form)
103 | c1z6rC_ |
| not modelled | 96.7 | 6 | PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli
104 | c3dkwB_ |
| not modelled | 96.7 | 19 | PDB header:transcription regulator Chain: B: PDB Molecule:dnr protein; PDBTitle: crystal structure of dnr from pseudomonas aeruginosa.
105 | c2ev5B_ |
| not modelled | 96.6 | 17 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator mntr; PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
106 | d1z6ra1 |
| not modelled | 96.6 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain
107 | d2p7vb1 |
| not modelled | 96.6 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
108 | c2elhA_ |
|  | 96.6 | 7 | PDB header:dna binding protein Chain: A: PDB Molecule:cg11849-pa; PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
109 | c3k0lA_ |
| not modelled | 96.6 | 10 | PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
110 | c2x4hA_ |
| not modelled | 96.6 | 15 | PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
111 | c2pexA_ |
| not modelled | 96.6 | 27 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator ohrr; PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
112 | d1s3ja_ |
| not modelled | 96.6 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
113 | c2gxgA_ |
| not modelled | 96.5 | 10 | PDB header:transcription Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator; PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
114 | c3f3xA_ |
| not modelled | 96.5 | 15 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
115 | c2rdpA_ |
| not modelled | 96.5 | 20 | PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
116 | d2hr3a1 |
| not modelled | 96.5 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
117 | c3bj6B_ |
| not modelled | 96.5 | 23 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579
118 | c1r71B_ |
| not modelled | 96.4 | 12 | PDB header:transcription/dna Chain: B: PDB Molecule:transcriptional repressor protein korb; PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna
119 | d2cg4a1 |
| not modelled | 96.4 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
120 | d1mkma1 |
| not modelled | 96.4 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0