Phyre 2 alignment of P76141 with c3iydF_

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Job Description | P76141
Confidence | 94.66% | Date | Thu Jan 5 12:19:32 GMT 2012
Rank | 221 | Aligned Residues | 34
% Identity | 15% | Template | c3iydF_
PDB info | PDB header:transcription/dna | Chain: F: PDB Molecule:rna polymerase sigma factor rpod; | PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
Resolution | 19.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 21 | . | . | . | . | . | . |  |  |  |  | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | I | A | W | F | Y | Y | . | . | . | . | H | D | G | L | T | Q | S | E | I | S | D | R | L | G | L | T | R | L | K | V | S | R | L | L | E | K | G
Query Conservation |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | V | L | R | M | R | F | G | I | D | M | N | T | D | H | T | L | E | E | V | G | K | Q | F | D | V | T | R | E | R | I | R | Q | I | E | A | K | A
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | S | S | S |  |  |  |  | S | T | T | G | G | G | T | T | T | S | S |  | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 557 | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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