Phyre 2 alignment of P45549 with c3ereD_

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Job Description | P45549
Confidence | 29.70% | Date | Thu Jan 5 12:03:06 GMT 2012
Rank | 45 | Aligned Residues | 21
% Identity | 33% | Template | c3ereD_
PDB info | PDB header:dna binding protein/dna | Chain: D: PDB Molecule:arginine repressor; | PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
Resolution | 2.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 318 | . | 320 | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | 330 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | N | L | A | R | L | V | E | A | M | Q | . | . | . | . | . | . | . | . | . | . | P | D | D | C | L | V | V | M | A | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | H | Y | L | A | S | A | I | D | R | A | A | L | P | Q | V | V | G | T | I | A | G | D | D | T | I | L | V | V | A | R | E
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | T |  | T | T |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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