Phyre 2 Results for P45549

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Email | l.a.kelley@imperial.ac.uk
Description | P45549
Date | Thu Jan 5 12:03:06 GMT 2012
Unique Job ID | ee989aa13feb61d4

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3m8yC_
Top template information
PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation
Confidence and coverage
Confidence: | 100.0% | Coverage: | 94%
383 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | R | F | V | V | L | V | I | D | S | F | G | V | G | A | M | K | D | V | T | L | V | R | P | Q | D | A | G | A | N | T | C | G | H | I | L | S | Q | L | P | H | L | Q | L | P | T | L | E | T | L | G | L | I | N | A | L | G | Y | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | P | G | D | M | Q | P | S | D | S | A | T | W | G | V | A | E | L | Q | H | E | G | G | D | T | F | M | G | H | Q | E | I | L | G | T | R | P | L | P | P | L | R | M | P | F | R | D | V | I | D | R | V | E | Q | A | L | V | S | A | G | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  | ? |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Q | V | E | R | R | G | D | D | L | Q | F | L | W | V | N | Q | A | V | A | I | G | D | N | L | E | A | D | L | G | Q | V | Y | N | I | T | A | N | L | S | V | I | S | F | D | D | A | I | K | I | G | R | I | V | R | E | Q | V | Q | V | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | R | V | I | T | F | G | G | L | L | T | D | S | Q | R | I | L | D | A | A | E | S | K | E | G | R | F | I | G | I | N | A | P | R | S | G | A | Y | D | N | G | F | Q | V | V | H | M | G | Y | G | V | D | E | K | V | Q | V | P | Q | K | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  | ? |  | ? | ? | ? |  | ? | ? | ? |  | ? |  |  | ? |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | Y | E | A | G | V | P | T | V | L | V | G | K | V | A | D | I | V | N | N | P | Y | G | V | S | W | Q | N | L | V | D | S | Q | R | I | M | D | I | T | L | N | E | F | N | T | H | P | T | A | F | I | C | T | N | I | Q | E | T | D | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | G | H | A | E | D | V | A | R | Y | A | E | R | L | Q | V | V | D | R | N | L | A | R | L | V | E | A | M | Q | P | D | D | C | L | V | V | M | A | D | H | G | N | D | P | T | I | G | H | S | H | H | T | R | E | V | V | P | V | L | V | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | .
Sequence |  | Q | Q | G | M | I | A | T | Q | L | G | V | R | T | T | L | S | D | V | G | A | T | V | C | E | F | F | R | A | P | P | P | Q | N | G | R | S | F | L | S | S | L | R | F | A | G | D | T | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3m8yC_ |

### PDB 3m8y chain C

Region: 2 - 401
Aligned: 383
Modelled: 400
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: C: PDB Molecule:phosphopentomutase;
PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation

Phyre2
2 |
| c2i09A_ |

### PDB 2i09 chain A

Region: 1 - 401
Aligned: 363
Modelled: 372
Confidence: 100.0%
Identity: 28%
PDB header:isomerase
Chain: A: PDB Molecule:phosphopentomutase;
PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans

Phyre2
3 |
| d1p49a_ |

### PDB 1p49 chain A

Region: 3 - 406
Aligned: 366
Modelled: 375
Confidence: 100.0%
Identity: 11%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2
4 |
| c3b5qB_ |

### PDB 3b5q chain B

Region: 3 - 405
Aligned: 328
Modelled: 342
Confidence: 100.0%
Identity: 12%
PDB header:hydrolase
Chain: B: PDB Molecule:putative sulfatase yidj;
PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution

Phyre2
5 |
| d1auka_ |

### PDB 1auk chain A

Region: 2 - 406
Aligned: 315
Modelled: 325
Confidence: 100.0%
Identity: 15%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2
6 |
| c2zktB_ |

### PDB 2zkt chain B

Region: 1 - 390
Aligned: 334
Modelled: 334
Confidence: 100.0%
Identity: 13%
PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: structure of ph0037 protein from pyrococcus horikoshii

Phyre2
7 |
| c3ed4A_ |

### PDB 3ed4 chain A

Region: 3 - 406
Aligned: 338
Modelled: 355
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:arylsulfatase;
PDBTitle: crystal structure of putative arylsulfatase from escherichia coli

Phyre2
8 |
| d1hdha_ |

### PDB 1hdh chain A

Region: 3 - 407
Aligned: 372
Modelled: 386
Confidence: 100.0%
Identity: 16%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2
9 |
| c2vqrA_ |

### PDB 2vqr chain A

Region: 2 - 405
Aligned: 373
Modelled: 380
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:putative sulfatase;
PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily

Phyre2
10 |
| c2qzuA_ |

### PDB 2qzu chain A

Region: 3 - 406
Aligned: 348
Modelled: 356
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:putative sulfatase yidj;
PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123

Phyre2
11 |
| d1fsua_ |

### PDB 1fsu chain A

Region: 2 - 407
Aligned: 318
Modelled: 334
Confidence: 100.0%
Identity: 14%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2
12 |
| d2i09a1 |

### PDB 2i09 chain A domain 1

Region: 1 - 401
Aligned: 275
Modelled: 282
Confidence: 100.0%
Identity: 28%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: DeoB catalytic domain-like

Phyre2
13 |
| c3lxqB_ |

### PDB 3lxq chain B

Region: 2 - 404
Aligned: 280
Modelled: 291
Confidence: 100.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp1736;
PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a

Phyre2
14 |
| c2w8dB_ |

### PDB 2w8d chain B

Region: 2 - 404
Aligned: 283
Modelled: 283
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2;
PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis

Phyre2
15 |
| c2w5tA_ |

### PDB 2w5t chain A

Region: 2 - 404
Aligned: 269
Modelled: 269
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid
PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas.

Phyre2
16 |
| d1o98a2 |

### PDB 1o98 chain A domain 2

Region: 2 - 398
Aligned: 262
Modelled: 282
Confidence: 100.0%
Identity: 21%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain

Phyre2
17 |
| c3q3qA_ |

### PDB 3q3q chain A

Region: 2 - 402
Aligned: 342
Modelled: 351
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:alkaline phosphatase;
PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1

Phyre2
18 |
| c2gsoB_ |

### PDB 2gso chain B

Region: 2 - 402
Aligned: 261
Modelled: 260
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase;
PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate

Phyre2
19 |
| c3szzA_ |

### PDB 3szz chain A

Region: 2 - 383
Aligned: 276
Modelled: 276
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:phosphonoacetate hydrolase;
PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate

Phyre2
20 |
| d1ei6a_ |

### PDB 1ei6 chain A

Region: 2 - 383
Aligned: 267
Modelled: 271
Confidence: 100.0%
Identity: 18%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Phosphonoacetate hydrolase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3m8yC_ |
|  | 100.0 | 26 | PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation
2 | c2i09A_ |
|  | 100.0 | 28 | PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans
3 | d1p49a_ |
|  | 100.0 | 11 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase
4 | c3b5qB_ |
|  | 100.0 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution
5 | d1auka_ |
|  | 100.0 | 15 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase
6 | c2zktB_ |
|  | 100.0 | 13 | PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii
7 | c3ed4A_ |
|  | 100.0 | 12 | PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli
8 | d1hdha_ |
|  | 100.0 | 16 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase
9 | c2vqrA_ |
|  | 100.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily
10 | c2qzuA_ |
|  | 100.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123
11 | d1fsua_ |
|  | 100.0 | 14 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase
12 | d2i09a1 |
|  | 100.0 | 28 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like
13 | c3lxqB_ |
|  | 100.0 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a
14 | c2w8dB_ |
|  | 100.0 | 11 | PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis
15 | c2w5tA_ |
|  | 100.0 | 11 | PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas.
16 | d1o98a2 |
|  | 100.0 | 21 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
17 | c3q3qA_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1
18 | c2gsoB_ |
|  | 100.0 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate
19 | c3szzA_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate
20 | d1ei6a_ |
|  | 100.0 | 18 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Phosphonoacetate hydrolase
21 | c2xrgA_ |
| not modelled | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor
22 | c2xr9A_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2)
23 | d1y6va1 |
| not modelled | 100.0 | 13 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase
24 | c1ew2A_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase
25 | d1zeda1 |
| not modelled | 100.0 | 15 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase
26 | d1k7ha_ |
| not modelled | 100.0 | 15 | Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase
27 | c2iucB_ |
| not modelled | 100.0 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5
28 | c3e2dB_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase
29 | c1o98A_ |
| not modelled | 100.0 | 24 | PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate
30 | c3a52A_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp.
31 | c2w0yB_ |
| not modelled | 100.0 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase
32 | c2x98A_ |
| not modelled | 100.0 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase
33 | c3igzB_ |
| not modelled | 99.9 | 24 | PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration
34 | c3iddA_ |
| not modelled | 99.9 | 15 | PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728
35 | c2d1gB_ |
| not modelled | 99.4 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: structure of francisella tularensis acid phosphatase a (acpa) bound to2 orthovanadate
36 | d2i09a2 |
| not modelled | 87.2 | 7 | Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like
37 | d1b4ub_ |
| not modelled | 68.0 | 16 | Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like
38 | d1j33a_ |
| not modelled | 46.4 | 32 | Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
39 | c3oaaO_ |
| not modelled | 40.4 | 20 | PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
40 | c3f5dA_ |
| not modelled | 39.4 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
41 | c3cagF_ |
| not modelled | 34.9 | 33 | PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines.
42 | d2p5ma1 |
| not modelled | 33.0 | 14 | Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor
43 | d1b4ba_ |
| not modelled | 31.6 | 19 | Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor
44 | c2xokG_ |
| not modelled | 31.4 | 17 | PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution
45 | c3ereD_ |
| not modelled | 29.7 | 33 | PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
46 | c1b4aA_ |
| not modelled | 23.3 | 19 | PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
47 | d1l5oa_ |
| not modelled | 20.9 | 35 | Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
48 | d1xxaa_ |
| not modelled | 20.4 | 24 | Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor
49 | d1a05a_ |
| not modelled | 19.4 | 23 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
50 | d2nlya1 |
| not modelled | 19.3 | 40 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase
51 | d1w0da_ |
| not modelled | 16.2 | 23 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
52 | d1fs0g_ |
| not modelled | 15.7 | 16 | Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit
53 | c3v4gA_ |
| not modelled | 15.1 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
54 | c3e20C_ |
| not modelled | 14.4 | 8 | PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex
55 | c3pnuA_ |
| not modelled | 13.6 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:dihydroorotase; PDBTitle: 2.4 angstrom crystal structure of dihydroorotase (pyrc) from2 campylobacter jejuni.
56 | d1dc1a_ |
| not modelled | 11.9 | 10 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease BsobI
57 | d1dt9a3 |
| not modelled | 11.2 | 13 | Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
58 | c1zzgB_ |
| not modelled | 11.2 | 12 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8
59 | d1t6la1 |
| not modelled | 11.1 | 10 | Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor
60 | c2w6jG_ |
| not modelled | 10.8 | 33 | PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.
61 | c3p19A_ |
| not modelled | 10.4 | 40 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein
62 | d1xo1a2 |
| not modelled | 9.9 | 21 | Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain
63 | c3ff1B_ |
| not modelled | 9.7 | 20 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus
64 | c1yx3A_ |
| not modelled | 9.5 | 29 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
65 | d1nfga2 |
| not modelled | 9.5 | 23 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase), catalytic domain
66 | c2qe7G_ |
| not modelled | 9.2 | 33 | PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
67 | d1tfra2 |
| not modelled | 9.1 | 25 | Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain
68 | d2jdig1 |
| not modelled | 9.0 | 33 | Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit
69 | d1szpb1 |
| not modelled | 9.0 | 14 | Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain
70 | c3ajfA_ |
| not modelled | 8.9 | 16 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus
71 | d1gkra2 |
| not modelled | 8.8 | 23 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase), catalytic domain
72 | d1uqra_ |
| not modelled | 8.8 | 56 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
73 | d1k1da2 |
| not modelled | 8.4 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase), catalytic domain
74 | c2q8nB_ |
| not modelled | 8.3 | 8 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution
75 | d1fe0a_ |
| not modelled | 8.3 | 25 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
76 | d1p94a_ |
| not modelled | 8.3 | 17 | Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like
77 | d1yzfa1 |
| not modelled | 8.3 | 50 | Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:TAP-like
78 | d1ji8a_ |
| not modelled | 8.2 | 24 | Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
79 | d1c7qa_ |
| not modelled | 8.2 | 16 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
80 | d1dzfa1 |
| not modelled | 8.1 | 15 | Fold:Restriction endonuclease-like Superfamily:Eukaryotic RPB5 N-terminal domain Family:Eukaryotic RPB5 N-terminal domain
81 | d2i5ia1 |
| not modelled | 7.9 | 14 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:YdjC-like
82 | c2o2cB_ |
| not modelled | 7.8 | 8 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site
83 | c1ly1A_ |
| not modelled | 7.6 | 11 | PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase
84 | d1ly1a_ |
| not modelled | 7.6 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
85 | d1qrda_ |
| not modelled | 7.4 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
86 | c2e67D_ |
| not modelled | 7.2 | 27 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein tthb029; PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8
87 | d2v4jc1 |
| not modelled | 7.2 | 18 | Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
88 | d2eg6a1 |
| not modelled | 7.1 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Dihydroorotase
89 | c3jzeC_ |
| not modelled | 7.0 | 14 | PDB header:hydrolase Chain: C: PDB Molecule:dihydroorotase; PDBTitle: 1.8 angstrom resolution crystal structure of dihydroorotase (pyrc)2 from salmonella enterica subsp. enterica serovar typhimurium str. lt2
90 | d1ypra_ |
| not modelled | 7.0 | 10 | Fold:Profilin-like Superfamily:Profilin (actin-binding protein) Family:Profilin (actin-binding protein)
91 | d1ynya2 |
| not modelled | 6.9 | 27 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase), catalytic domain
92 | d1hm5a_ |
| not modelled | 6.8 | 4 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
93 | c3nbuC_ |
| not modelled | 6.8 | 8 | PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase
94 | c3c9pA_ |
| not modelled | 6.7 | 3 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917
95 | c3hjbA_ |
| not modelled | 6.5 | 8 | PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
96 | d1u0fa_ |
| not modelled | 6.5 | 4 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
97 | d1f2ka_ |
| not modelled | 6.5 | 13 | Fold:Profilin-like Superfamily:Profilin (actin-binding protein) Family:Profilin (actin-binding protein)
98 | c1yypA_ |
| not modelled | 6.3 | 11 | PDB header:replication/transferase Chain: A: PDB Molecule:dna polymerase processivity factor; PDBTitle: crystal structure of cytomegalovirus ul44 bound to c-terminal peptide2 from cmv ul54
99 | d1iata_ |
| not modelled | 6.1 | 4 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0