BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (72 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADA9 Osmotically-inducible lipoprotein B n=130 Tax=ce... 137 9e-32 UniRef50_C5TLW3 Surface antigen family protein n=5 Tax=Proteobac... 50 3e-05 UniRef50_B4EVX7 Osmotically-inducible lipoprotein n=7 Tax=Proteo... 44 0.002 UniRef50_A4TJ43 Osmotically inducible lipoprotein B n=4 Tax=Bact... 43 0.004 UniRef50_C5B8E8 Conserved domain protein n=8 Tax=Proteobacteria ... 41 0.016 UniRef50_C8WWT0 Putative uncharacterized protein n=1 Tax=Alicycl... 40 0.026 >UniRef50_P0ADA9 Osmotically-inducible lipoprotein B n=130 Tax=cellular organisms RepID=OSMB_ECO57 Length = 72 Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA Sbjct: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 Query: 61 AVGGVIGHQVGK 72 AVGGVIGHQVGK Sbjct: 61 AVGGVIGHQVGK 72 >UniRef50_C5TLW3 Surface antigen family protein n=5 Tax=Proteobacteria RepID=C5TLW3_NEIFL Length = 70 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 6 KKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGAAVGGV 65 K V I LA SL AC+N ++ RNTA GA G + G L G T TLGGAA+GGV Sbjct: 3 KTFAKTVTLIMLAASLGACANMTQTQRNTAAGAVLGGVAGN-LIGGDTGSTLGGAALGGV 61 Query: 66 IGHQV 70 IG QV Sbjct: 62 IGSQV 66 >UniRef50_B4EVX7 Osmotically-inducible lipoprotein n=7 Tax=Proteobacteria RepID=B4EVX7_PROMH Length = 73 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/72 (65%), Positives = 57/72 (79%) Query: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 M +T KK+ +A L SL+ CS+ +KRDRNTAIGAGAGA+GGA+LTDGS LGT+GG Sbjct: 1 MNITFKKIGTMCVASVLLFSLAGCSSMTKRDRNTAIGAGAGAIGGAILTDGSPLGTIGGG 60 Query: 61 AVGGVIGHQVGK 72 +GGVIGHQVGK Sbjct: 61 VLGGVIGHQVGK 72 >UniRef50_A4TJ43 Osmotically inducible lipoprotein B n=4 Tax=Bacteria RepID=A4TJ43_YERPP Length = 72 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 54/62 (87%), Gaps = 1/62 (1%) Query: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 M + +K+ A LA+TLA+SLSACSN SKRDRNTAIGAGAGA+GGAVLT GSTLGTLGGA Sbjct: 1 MMIINKRFATAALALTLALSLSACSNMSKRDRNTAIGAGAGAVGGAVLT-GSTLGTLGGA 59 Query: 61 AV 62 A+ Sbjct: 60 AI 61 >UniRef50_C5B8E8 Conserved domain protein n=8 Tax=Proteobacteria RepID=C5B8E8_EDWI9 Length = 72 Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/49 (83%), Positives = 47/49 (95%) Query: 24 CSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGAAVGGVIGHQVGK 72 CSN SKRDRNTAIGAGAGALGGA+LTDGS LGT+GGAA+GG+IGHQ+G+ Sbjct: 24 CSNMSKRDRNTAIGAGAGALGGAILTDGSALGTVGGAAIGGLIGHQIGR 72 >UniRef50_C8WWT0 Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWT0_ALIAD Length = 310 Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 35 AIGAGAGALGGAVLTDGSTLGTLGGAAVGGVIGHQVG 71 A+G+G GAL G ++TDG+ G++ GA +GG +G G Sbjct: 215 AVGSGVGALVGGMVTDGNLTGSVIGAIIGGALGAYYG 251 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADA9 Osmotically-inducible lipoprotein B n=130 Tax=ce... 64 1e-09 UniRef50_B4EVX7 Osmotically-inducible lipoprotein n=7 Tax=Proteo... 57 3e-07 UniRef50_C5TLW3 Surface antigen family protein n=5 Tax=Proteobac... 49 5e-05 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0ADA9 Osmotically-inducible lipoprotein B n=130 Tax=cellular organisms RepID=OSMB_ECO57 Length = 72 Score = 64.3 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA Sbjct: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 Query: 61 AVGGVIGHQVGK 72 AVGGVIGHQVGK Sbjct: 61 AVGGVIGHQVGK 72 >UniRef50_B4EVX7 Osmotically-inducible lipoprotein n=7 Tax=Proteobacteria RepID=B4EVX7_PROMH Length = 73 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 47/72 (65%), Positives = 57/72 (79%) Query: 1 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA 60 M +T KK+ +A L SL+ CS+ +KRDRNTAIGAGAGA+GGA+LTDGS LGT+GG Sbjct: 1 MNITFKKIGTMCVASVLLFSLAGCSSMTKRDRNTAIGAGAGAIGGAILTDGSPLGTIGGG 60 Query: 61 AVGGVIGHQVGK 72 +GGVIGHQVGK Sbjct: 61 VLGGVIGHQVGK 72 >UniRef50_C5TLW3 Surface antigen family protein n=5 Tax=Proteobacteria RepID=C5TLW3_NEIFL Length = 70 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 6 KKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGAAVGGV 65 K V I LA SL AC+N ++ RNTA GA G + G L G T TLGGAA+GGV Sbjct: 3 KTFAKTVTLIMLAASLGACANMTQTQRNTAAGAVLGGVAGN-LIGGDTGSTLGGAALGGV 61 Query: 66 IGHQV 70 IG QV Sbjct: 62 IGSQV 66 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.321 0.136 0.356 Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,696,164 Number of Sequences: 3077464 Number of extensions: 9020862 Number of successful extensions: 110058 Number of sequences better than 1.0e-01: 161 Number of HSP's better than 0.1 without gapping: 64 Number of HSP's successfully gapped in prelim test: 194 Number of HSP's that attempted gapping in prelim test: 109343 Number of HSP's gapped (non-prelim): 515 length of query: 72 length of database: 1,040,396,356 effective HSP length: 43 effective length of query: 29 effective length of database: 908,065,404 effective search space: 26333896716 effective search space used: 26333896716 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits)