BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (450 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A9MJ16 Putative ECA polymerase n=113 Tax=Enterobacteria... 801 0.0 UniRef50_C6DHE3 Putative ECA polymerase n=56 Tax=Enterobacteriac... 700 0.0 UniRef50_A7JRK5 Possible 4-alpha-L-fucosyltransferase n=9 Tax=Pa... 323 8e-87 UniRef50_O30626 Putative O-antigen polymerase n=1 Tax=Escherichi... 88 6e-16 UniRef50_D0XH57 Putative uncharacterized protein n=1 Tax=Vibrio ... 56 2e-06 >UniRef50_A9MJ16 Putative ECA polymerase n=113 Tax=Enterobacteriaceae RepID=WZYE_SALAR Length = 452 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/449 (94%), Positives = 437/449 (97%) Query: 1 MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR 60 M+L+QFSGL VVWLL TLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR Sbjct: 1 MNLMQFSGLLVVWLLSTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR 60 Query: 61 FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL 120 FDVGVAPPEILLQALLSA CFY VYYVTYKTRLRKRV DV R+PLFTMNRVET+LTWVIL Sbjct: 61 FDVGVAPPEILLQALLSAACFYGVYYVTYKTRLRKRVVDVTRKPLFTMNRVETHLTWVIL 120 Query: 121 MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK 180 MGIALVSVGIFFMHNGFLLFRL+SYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK Sbjct: 121 MGIALVSVGIFFMHNGFLLFRLHSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK 180 Query: 181 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM 240 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM Sbjct: 181 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM 240 Query: 241 FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF 300 FWLALKRYG+NVSGDEAFYTFLYLTRDTFSPWENLALLLQNY NIDFQGLAPIVRDFYVF Sbjct: 241 FWLALKRYGLNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYHNIDFQGLAPIVRDFYVF 300 Query: 301 IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI 360 IP+WLWPGRPS+VLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI Sbjct: 301 IPTWLWPGRPSIVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI 360 Query: 361 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL 420 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFF+VVFGA L Sbjct: 361 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFLVVFGASL 420 Query: 421 MIAKLLYWLFESAGLIHKRTKSSLRTQVE 449 ++AKLL+WLF+SAGLIHKRT S + QVE Sbjct: 421 LVAKLLFWLFDSAGLIHKRTTSLPQAQVE 449 >UniRef50_C6DHE3 Putative ECA polymerase n=56 Tax=Enterobacteriaceae RepID=WZYE_PECCP Length = 463 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/439 (78%), Positives = 391/439 (89%), Gaps = 1/439 (0%) Query: 1 MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR 60 M+L QF GLFVV+L+ +FI +LTW EFRRVRFNFNV FSLL+LLTF+FGFP T VLVFR Sbjct: 1 MTLGQFGGLFVVYLISVIFILSLTWMEFRRVRFNFNVLFSLLYLLTFYFGFPFTCVLVFR 60 Query: 61 FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL 120 F V V P + LLQA+LSA FYA+YYV+YKTRLR++ + VPR PL T+NRVE NLTW++L Sbjct: 61 FGVDVVPVQFLLQAMLSATAFYAIYYVSYKTRLRQKTS-VPRAPLLTVNRVEANLTWLLL 119 Query: 121 MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK 180 IA+ +VGIFF++NGFLLF+L SYSQIFSS+VSGVALKRFFYFFIPAMLVVYFLRQ + Sbjct: 120 ALIAVATVGIFFLNNGFLLFKLRSYSQIFSSDVSGVALKRFFYFFIPAMLVVYFLRQTQR 179 Query: 181 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM 240 AWL FL+ TVAFG+LTY+IVGGTRAN+IIAFA+FLFIGI+RGWI+LWML AAG GIVGM Sbjct: 180 AWLMFLIGTVAFGMLTYVIVGGTRANLIIAFALFLFIGIVRGWITLWMLVAAGAFGIVGM 239 Query: 241 FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF 300 FWLALKRYG++VSGD AFYTFLYLTRDTFSPWENLALL QNYD I+FQGLAPI RDFYVF Sbjct: 240 FWLALKRYGLDVSGDYAFYTFLYLTRDTFSPWENLALLWQNYDKIEFQGLAPIARDFYVF 299 Query: 301 IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI 360 IPSWLWP RP++VLNSANYFTWEVLNNHSGLAISPTL+GSLVVMGG LFIPLGAI VGL+ Sbjct: 300 IPSWLWPDRPNLVLNSANYFTWEVLNNHSGLAISPTLLGSLVVMGGVLFIPLGAIAVGLV 359 Query: 361 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL 420 IKWFDW+YELG + NRYKAAIL +FCFGA+FN+IVL REG+DSFVSRVVFF +VFG CL Sbjct: 360 IKWFDWVYELGKNDSNRYKAAILQAFCFGAVFNIIVLTREGVDSFVSRVVFFCLVFGLCL 419 Query: 421 MIAKLLYWLFESAGLIHKR 439 ++AKLLYWL ESAGLI +R Sbjct: 420 LVAKLLYWLLESAGLIRQR 438 >UniRef50_A7JRK5 Possible 4-alpha-L-fucosyltransferase n=9 Tax=Pasteurellaceae RepID=A7JRK5_PASHA Length = 423 Score = 323 bits (828), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 180/400 (45%), Positives = 258/400 (64%), Gaps = 12/400 (3%) Query: 28 FRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYV 87 +++ +F++ FSLL+ +TF+ GFP + ++ F FD + + Q +AG Y +YYV Sbjct: 26 YQKSGISFHLLFSLLYFVTFYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYV 85 Query: 88 TYKTRLRKRVADVPRRPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQ 147 Y R+ +P + + T IL +A+V++ F NGFLLF+L YSQ Sbjct: 86 VYS-----RLWSAVSQPTALVANFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQ 140 Query: 148 IFSSE-VSGVALKRFFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRAN 206 +F+ + V ALKRFFYF +PA+L+ FL ++ AW L+ AFG+L+Y+ VGGT AN Sbjct: 141 LFAKDRVILSALKRFFYFLLPALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWAN 200 Query: 207 IIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTR 266 + +A FL IG+ +G++SL + A ++G+V MF+LAL RY + +SG E YTFLYL+R Sbjct: 201 LALAVGFFLLIGLQQGYLSLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSR 260 Query: 267 DTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTWEVLN 326 DTFSPWENLA + N +++QGL PIVRDFYV+IP LW RP +V N+ANYFT +L Sbjct: 261 DTFSPWENLARVFSN--EVEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILG 318 Query: 327 NHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSF 386 N SGLAISPTL+GS +MGG + LG +V +IK D L+ +A+L ++ Sbjct: 319 NQSGLAISPTLLGSFYIMGGFSVMALGMGIVAAMIKALDNLFAYAKAC----NSALLQAY 374 Query: 387 CFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLL 426 CFG +FN+IVL REG+D+FVSR FF ++F AC ++AK+L Sbjct: 375 CFGNLFNLIVLVREGIDAFVSRFCFFTLIFMACYLLAKIL 414 >UniRef50_O30626 Putative O-antigen polymerase n=1 Tax=Escherichia coli RepID=O30626_ECOLX Length = 413 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 161/325 (49%), Gaps = 23/325 (7%) Query: 102 RRPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRF 161 R P+ +N V +V+L+ + + V + + NG L SY+ ++ G Sbjct: 84 REPI--LNGVIIGSGYVLLLMLYFLGVLSYVLQNGIALGL--SYNDRLTANTGGGLSIIL 139 Query: 162 FYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIF--LFIGI 219 Y +IPA++++Y + + + L+ +V GL+ Y+++GG+R ++A IF +++ + Sbjct: 140 MYAYIPALILIYISKPSKISLIICLLLSVFCGLIYYVVIGGSRN--VLAAGIFSLIYLAL 197 Query: 220 IRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAF-----YTFLYLTRDTFSPWEN 274 I+ LA V G+ + L L RY N++ F + ++FSP Sbjct: 198 YFKHITKKFLALIIVCGVFTLMILELYRYANNITDAINFIMNGGMEVILFAFESFSPMHA 257 Query: 275 LALLLQNYDN--IDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTWEVLNNHSGLA 332 + + + D I+ Q L+ +F + IP +LW +P VLN+ ++T EVL+ + L Sbjct: 258 VININEALDKRLIEPQYLSTFFNEFSIIIPRFLWEDKPINVLNNGYFYTTEVLSLDTNLT 317 Query: 333 ISPTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF 392 +SPT +G+ ++M G+ F +G + G+I+ FD + + N Y IL S ++ Sbjct: 318 MSPTFLGTSLIMFGSWFYWVGGFISGVILFVFDRSF---SHSSNLYWKIILLS----SVG 370 Query: 393 NMIVLAREGLDSFVSRVV-FFIVVF 416 + R+G + F ++ FFIV+F Sbjct: 371 YLFFWVRDGFEVFCYILIKFFIVMF 395 >UniRef50_D0XH57 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XH57_VIBHA Length = 448 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 192 FGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGMN 251 FGL ++++GG+R A I+LFIG +G++S + G + + +L L RY ++ Sbjct: 205 FGLCYFVVIGGSRNVFASAILIYLFIGYFKGFLSRKTILGFGFCAFLLLNFLILFRYNVS 264 Query: 252 VSG---DEAFYTFLYLTRDTFSPW----ENLALLLQNYDNIDFQGLAPIVRDFYVFIPSW 304 +S EA F+ D+ SP E++ + + +I G F IP Sbjct: 265 LSDMNIKEAIAIFISYFSDSISPLNYQVESVNFVTNSSAHIP-HGWDLFFNQFLALIPRA 323 Query: 305 LWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGS-LVVMGGALFI 350 W +P +++NS+ YFT +L L ++ T++ S L++M ++ Sbjct: 324 FWNDKPIVMMNSSYYFTQYILGFSGNLNMASTMLSSALIIMKNGYYV 370 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A9MJ16 Putative ECA polymerase n=113 Tax=Enterobacteria... 496 e-139 UniRef50_C6DHE3 Putative ECA polymerase n=56 Tax=Enterobacteriac... 488 e-136 UniRef50_A7JRK5 Possible 4-alpha-L-fucosyltransferase n=9 Tax=Pa... 360 8e-98 UniRef50_O30626 Putative O-antigen polymerase n=1 Tax=Escherichi... 251 3e-65 UniRef50_D0XH57 Putative uncharacterized protein n=1 Tax=Vibrio ... 147 9e-34 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_A9MJ16 Putative ECA polymerase n=113 Tax=Enterobacteriaceae RepID=WZYE_SALAR Length = 452 Score = 496 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 423/449 (94%), Positives = 437/449 (97%) Query: 1 MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR 60 M+L+QFSGL VVWLL TLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR Sbjct: 1 MNLMQFSGLLVVWLLSTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR 60 Query: 61 FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL 120 FDVGVAPPEILLQALLSA CFY VYYVTYKTRLRKRV DV R+PLFTMNRVET+LTWVIL Sbjct: 61 FDVGVAPPEILLQALLSAACFYGVYYVTYKTRLRKRVVDVTRKPLFTMNRVETHLTWVIL 120 Query: 121 MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK 180 MGIALVSVGIFFMHNGFLLFRL+SYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK Sbjct: 121 MGIALVSVGIFFMHNGFLLFRLHSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK 180 Query: 181 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM 240 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM Sbjct: 181 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM 240 Query: 241 FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF 300 FWLALKRYG+NVSGDEAFYTFLYLTRDTFSPWENLALLLQNY NIDFQGLAPIVRDFYVF Sbjct: 241 FWLALKRYGLNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYHNIDFQGLAPIVRDFYVF 300 Query: 301 IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI 360 IP+WLWPGRPS+VLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI Sbjct: 301 IPTWLWPGRPSIVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI 360 Query: 361 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL 420 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFF+VVFGA L Sbjct: 361 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFLVVFGASL 420 Query: 421 MIAKLLYWLFESAGLIHKRTKSSLRTQVE 449 ++AKLL+WLF+SAGLIHKRT S + QVE Sbjct: 421 LVAKLLFWLFDSAGLIHKRTTSLPQAQVE 449 >UniRef50_C6DHE3 Putative ECA polymerase n=56 Tax=Enterobacteriaceae RepID=WZYE_PECCP Length = 463 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 343/439 (78%), Positives = 390/439 (88%), Gaps = 1/439 (0%) Query: 1 MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR 60 M+L QF GLFVV+L+ +FI +LTW EFRRVRFNFNV FSLL+LLTF+FGFP T VLVFR Sbjct: 1 MTLGQFGGLFVVYLISVIFILSLTWMEFRRVRFNFNVLFSLLYLLTFYFGFPFTCVLVFR 60 Query: 61 FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL 120 F V V P + LLQA+LSA FYA+YYV+YKTRLR++ VPR PL T+NRVE NLTW++L Sbjct: 61 FGVDVVPVQFLLQAMLSATAFYAIYYVSYKTRLRQKT-SVPRAPLLTVNRVEANLTWLLL 119 Query: 121 MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK 180 IA+ +VGIFF++NGFLLF+L SYSQIFSS+VSGVALKRFFYFFIPAMLVVYFLRQ + Sbjct: 120 ALIAVATVGIFFLNNGFLLFKLRSYSQIFSSDVSGVALKRFFYFFIPAMLVVYFLRQTQR 179 Query: 181 AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM 240 AWL FL+ TVAFG+LTY+IVGGTRAN+IIAFA+FLFIGI+RGWI+LWML AAG GIVGM Sbjct: 180 AWLMFLIGTVAFGMLTYVIVGGTRANLIIAFALFLFIGIVRGWITLWMLVAAGAFGIVGM 239 Query: 241 FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF 300 FWLALKRYG++VSGD AFYTFLYLTRDTFSPWENLALL QNYD I+FQGLAPI RDFYVF Sbjct: 240 FWLALKRYGLDVSGDYAFYTFLYLTRDTFSPWENLALLWQNYDKIEFQGLAPIARDFYVF 299 Query: 301 IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI 360 IPSWLWP RP++VLNSANYFTWEVLNNHSGLAISPTL+GSLVVMGG LFIPLGAI VGL+ Sbjct: 300 IPSWLWPDRPNLVLNSANYFTWEVLNNHSGLAISPTLLGSLVVMGGVLFIPLGAIAVGLV 359 Query: 361 IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL 420 IKWFDW+YELG + NRYKAAIL +FCFGA+FN+IVL REG+DSFVSRVVFF +VFG CL Sbjct: 360 IKWFDWVYELGKNDSNRYKAAILQAFCFGAVFNIIVLTREGVDSFVSRVVFFCLVFGLCL 419 Query: 421 MIAKLLYWLFESAGLIHKR 439 ++AKLLYWL ESAGLI +R Sbjct: 420 LVAKLLYWLLESAGLIRQR 438 >UniRef50_A7JRK5 Possible 4-alpha-L-fucosyltransferase n=9 Tax=Pasteurellaceae RepID=A7JRK5_PASHA Length = 423 Score = 360 bits (923), Expect = 8e-98, Method: Composition-based stats. Identities = 182/415 (43%), Positives = 264/415 (63%), Gaps = 12/415 (2%) Query: 13 WLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFRFDVGVAPPEILL 72 +L+ +L + +++ +F++ FSLL+ +TF+ GFP + ++ F FD + + Sbjct: 11 YLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVTFYAGFPFSLIMAFGFDYPLPELKTQW 70 Query: 73 QALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVILMGIALVSVGIFF 132 Q +AG Y +YYV Y R+ +P + + T IL +A+V++ F Sbjct: 71 QVFTAAGVGYLIYYVVYS-----RLWSAVSQPTALVANFQAKTTACILAAVAVVALLYFL 125 Query: 133 MHNGFLLFRLNSYSQIFSSE-VSGVALKRFFYFFIPAMLVVYFLRQDSKAWLFFLVSTVA 191 NGFLLF+L YSQ+F+ + V ALKRFFYF +PA+L+ FL ++ AW L+ A Sbjct: 126 YLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLLPALLIFCFLYKNKTAWWALLIVGGA 185 Query: 192 FGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGMN 251 FG+L+Y+ VGGT AN+ +A FL IG+ +G++SL + A ++G+V MF+LAL RY + Sbjct: 186 FGILSYVAVGGTWANLALAVGFFLLIGLQQGYLSLSKVIAVSLIGVVAMFFLALARYKLT 245 Query: 252 VSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPS 311 +SG E YTFLYL+RDTFSPWENLA + N +++QGL PIVRDFYV+IP LW RP Sbjct: 246 LSGSEMIYTFLYLSRDTFSPWENLARVFSN--EVEYQGLMPIVRDFYVYIPQSLWQERPE 303 Query: 312 MVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELG 371 +V N+ANYFT +L N SGLAISPTL+GS +MGG + LG +V +IK D L+ Sbjct: 304 IVWNTANYFTKVILGNQSGLAISPTLLGSFYIMGGFSVMALGMGIVAAMIKALDNLFAYA 363 Query: 372 NREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLL 426 +A+L ++CFG +FN+IVL REG+D+FVSR FF ++F AC ++AK+L Sbjct: 364 KAC----NSALLQAYCFGNLFNLIVLVREGIDAFVSRFCFFTLIFMACYLLAKIL 414 >UniRef50_O30626 Putative O-antigen polymerase n=1 Tax=Escherichia coli RepID=O30626_ECOLX Length = 413 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 19/324 (5%) Query: 101 PRRPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR 160 R P+ +N V +V+L+ + + V + + NG L SY+ ++ G Sbjct: 83 IREPI--LNGVIIGSGYVLLLMLYFLGVLSYVLQNGIALGL--SYNDRLTANTGGGLSII 138 Query: 161 FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGII 220 Y +IPA++++Y + + + L+ +V GL+ Y+++GG+R + +++ + Sbjct: 139 LMYAYIPALILIYISKPSKISLIICLLLSVFCGLIYYVVIGGSRNVLAAGIFSLIYLALY 198 Query: 221 RGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAF-----YTFLYLTRDTFSPWENL 275 I+ LA V G+ + L L RY N++ F + ++FSP + Sbjct: 199 FKHITKKFLALIIVCGVFTLMILELYRYANNITDAINFIMNGGMEVILFAFESFSPMHAV 258 Query: 276 ALLLQNYDN--IDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAI 333 + + D I+ Q L+ +F + IP +LW +P VLN+ ++T EVL+ + L + Sbjct: 259 ININEALDKRLIEPQYLSTFFNEFSIIIPRFLWEDKPINVLNNGYFYTTEVLSLDTNLTM 318 Query: 334 SPTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIFN 393 SPT +G+ ++M G+ F +G + G+I+ FD + + N Y IL S ++ Sbjct: 319 SPTFLGTSLIMFGSWFYWVGGFISGVILFVFDRSF---SHSSNLYWKIILLS----SVGY 371 Query: 394 MIVLAREGLDSFVSRVV-FFIVVF 416 + R+G + F ++ FFIV+F Sbjct: 372 LFFWVRDGFEVFCYILIKFFIVMF 395 >UniRef50_D0XH57 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XH57_VIBHA Length = 448 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 64/295 (21%), Positives = 127/295 (43%), Gaps = 20/295 (6%) Query: 131 FFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSKAWLFFLVSTV 190 + + NGF L Y + L F+ +++ ++ + + Sbjct: 144 YIVINGFSLNLDGDYGDRLTDNAGNGWLLINMPAFVVVIILSSMNAIKKSDFILIMPWIL 203 Query: 191 AFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGM 250 FGL ++++GG+R A I+LFIG +G++S + G + + +L L RY + Sbjct: 204 FFGLCYFVVIGGSRNVFASAILIYLFIGYFKGFLSRKTILGFGFCAFLLLNFLILFRYNV 263 Query: 251 NVSG---DEAFYTFLYLTRDTFSPW----ENLALLLQNYDNIDFQGLAPIVRDFYVFIPS 303 ++S EA F+ D+ SP E++ + + +I G F IP Sbjct: 264 SLSDMNIKEAIAIFISYFSDSISPLNYQVESVNFVTNSSAHIP-HGWDLFFNQFLALIPR 322 Query: 304 WLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGS-LVVMGGALFIPLGAIVVGLIIK 362 W +P +++NS+ YFT +L L ++ T++ S L++M + VV + Sbjct: 323 AFWNDKPIVMMNSSYYFTQYILGFSGNLNMASTMLSSALIIMKNGYY------VVYAVAS 376 Query: 363 WFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSR-VVFFIVVF 416 F L + G N ++ ++ ++ +ARE L+ ++ +F+++F Sbjct: 377 VFVALMDRGISSKNF----LIKMVPIISMPSLFFMARESLELYIFITFKYFLMLF 427 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.332 0.146 0.411 Lambda K H 0.267 0.0440 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,821,126,010 Number of Sequences: 3077464 Number of extensions: 79328368 Number of successful extensions: 524101 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 561 Number of HSP's that attempted gapping in prelim test: 522774 Number of HSP's gapped (non-prelim): 1502 length of query: 450 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 318 effective length of database: 634,171,108 effective search space: 201666412344 effective search space used: 201666412344 T: 11 A: 40 X1: 16 ( 7.7 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.4 bits) S2: 95 (41.1 bits)