470 d1juba_ Probab=37.65   E-value=29  Score=15.24  Aligned_columns=227  Identities=10%

Q ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCH-----HHHHHHHHHHHH--HC
Q ss_conf             98768899999998479869962448999999999999970998999848677530798-----999999999998--66
Q batch____         1 MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIAL-----EEIYALCSAYST--TY   73 (286)
Q Consensus         1 M~Lv~~~~ll~~A~~~~yAV~AfN~~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~g~-----~~~~~~~~~~A~--~a   73 (286)
                      |+..+.-++...+.+.+++.........+.       .+....|.+.+...+.....++     +.+........+  ..
T Consensus        20 ~~~~~~~~~~~~~~~~g~g~~~~~s~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d1juba_          20 GVHCMTIEDLEELKASQAGAYITKSSTLEK-------REGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQ   92 (311)
T ss_dssp             TSSCSSHHHHHHHHHSSCSCCBCCCBCSSC-------BCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHHHHHHCCCCEEEECCCCCCH-------HCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             788799899999996599889832448110-------0178343555531123001457716689999999999986278


Q ss_pred             CCCEEEECCCCCCHHH----HHHHHHCC-CCEEEEECCCC------CHHHHHHHHHHHHHHHHHC-CCEEEEEEEEECCC
Q ss_conf             9989998267689999----99999708-98687210029------9899999999999999857-98498886550367
Q batch____        74 NMPLALHLDHHESLDD----IRRKVHAG-VRSAMIDGSHF------PFAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGV  141 (286)
Q Consensus        74 ~VPV~lHLDHg~~~e~----i~~Ai~~G-ftSVMiDgS~l------p~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~  141 (286)
                      ..|+.+.+. |.+.++    .++..+.| ...+-+.-+..      ++.++-..+.++++..... ..+|-.-+--....
T Consensus        93 ~~pi~~~i~-~~~~~~~~~~~~~~~~~~~a~~i~in~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~~k~~~~~~~  171 (311)
T d1juba_          93 EGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDL  171 (311)
T ss_dssp             SSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSH
T ss_pred             CCEEEEECC-CCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             946999716-8998999999987652358987733786655432003204989999999999972289411010477764


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC---------------------CCCCCCCHHHHHHHHHH
Q ss_conf             777654322122699899999998857989988526224888---------------------99864188999999986
Q batch____       142 EDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY---------------------SKTPKIDFQRLAEIREV  200 (286)
Q Consensus       142 e~~~~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~y---------------------~~~p~Ld~d~L~~I~~~  200 (286)
                                   ....+..+-+.+-|+|.+-++.....+..                     .....+..+.+.++.++
T Consensus       172 -------------~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~a~~~~~~~~~~  238 (311)
T d1juba_         172 -------------VHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTR  238 (311)
T ss_dssp             -------------HHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTT
T ss_pred             -------------CCHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -------------0029999888737986999708865321022321000013344456646411046899999998885


Q ss_pred             H--CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             1--998999558898989999999619828953107899999999999996
Q batch____       201 V--DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAE  249 (286)
Q Consensus       201 ~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~  249 (286)
                      +  ++|+..=||=..+ +++.+++..|-.=|=++|.+.+.....+++.+.+
T Consensus       239 ~~~~ipii~~GGI~~~-~dv~k~l~lGAdaV~igta~~~~g~~~~~~i~~e  288 (311)
T d1juba_         239 LKPEIQIIGTGGIETG-QDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKE  288 (311)
T ss_dssp             SCTTSEEEEESSCCSH-HHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCH-HHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHH
T ss_conf             0789669994787999-9999999729989999278885258999999999