346 d1jcna1 Probab=66.74   E-value=9.9  Score=18.33  Aligned_columns=228  Identities=16%

Q ss_pred             CCCCCHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             987688999999-9847986996244899999999999997099899984867753079899999999999866998999
Q batch____         1 MSIISTKYLLQD-AQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL   79 (286)
Q Consensus         1 M~Lv~~~~ll~~-A~~~~yAV~AfN~~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~a~VPV~l   79 (286)
                      |..++..+|-.. |+.++.++..-+..-.+....+-......+.|...+.....                    -..-+.
T Consensus        61 M~g~s~~~lA~a~a~~Gglg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~  120 (320)
T d1jcna1          61 MDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEDYPLASKDSQKQ--------------------LLCGAA  120 (320)
T ss_dssp             CTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCCCTTCCBCTTSC--------------------BCCEEE
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC--------------------CCCCCC
T ss_conf             656789999999998798178607899899999999899864011101123344--------------------311410


Q ss_pred             ECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf             82676899999999970898687210029989999999999999985798498886550367777654322122699899
Q batch____        80 HLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQE  159 (286)
Q Consensus        80 HLDHg~~~e~i~~Ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~yT~pee  159 (286)
                      -.......+.....++.|-.-+-+|.++-..+..+..-+++.+......+.+    +.+.                +|++
T Consensus       121 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~piiv----k~v~----------------s~ed  180 (320)
T d1jcna1         121 VGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIG----GNVV----------------TAAQ  180 (320)
T ss_dssp             ECSSTTHHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEE----EEEC----------------SHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEE----CCCC----------------CHHH
T ss_conf             1578768989999984399778812677765310236999997268662998----1668----------------9999


Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCCC------CCCCC-CHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEEC
Q ss_conf             9999988579899885262248889------98641-8899999998619989995588989899999996198289531
Q batch____       160 AKRFVELTGVDSLAVAIGTAHGLYS------KTPKI-DFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA  232 (286)
Q Consensus       160 a~~Fv~~TgvD~LAvaiGt~HG~y~------~~p~L-d~d~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~  232 (286)
                      |+...+ .|+|.+-|+.+--.+...      +.|.+ .+.++.+.....++|++.=||=-.+ .++.|+..+|-.=|=++
T Consensus       181 A~~a~~-aGvd~I~Vsg~gG~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~vpViadGGIr~g-~Dv~kALaLGAdaV~iG  258 (320)
T d1jcna1         181 AKNLID-AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTV-GHVVKALALGASTVMMG  258 (320)
T ss_dssp             HHHHHH-HTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSH-HHHHHHHHTTCSEEEES
T ss_pred             HHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH-HHHHHHHHCCCCEEEEC
T ss_conf             999996-7998999717688756654235655531001478898403489749997885798-99999997389899988


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             07899999999999996878676899999999999999999999828898
Q batch____       233 TELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSAN  282 (286)
Q Consensus       233 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgS~g  282 (286)
                      |-+...            .....-........+.+.+.++.-|.++|+.+
T Consensus       259 r~fl~~------------~ea~G~~g~v~~~i~~l~~el~~~m~l~G~~s  296 (320)
T d1jcna1         259 SLLAAT------------TEAPGEKGSIQKFVPYLIAGIQHGCQDIGARS  296 (320)
T ss_dssp             TTTTTS------------TTSSCCCCCHHHHHHHHHHHHHHHHHHHTCSB
T ss_pred             HHHHHH------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             077744------------41688720799999999999999999818893