298 c1sjaA_ Probab=79.62   E-value=4.9  Score=20.35  Aligned_columns=114  Identities=21%

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999708986872100299899999999999999857984988865503677776543221226998999999988
Q batch____        87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVEL  166 (286)
Q Consensus        87 ~e~i~~Ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~yT~peea~~Fv~~  166 (286)
                      .+.+.+.++.||+.+=+.-.   .++.+++-+.+.+..               |.+-..-.+.+...  ++++|.+|.+.
T Consensus       146 ~~~~~~~~~~G~~~~KiKig---~~~d~~~i~~ir~~~---------------g~~~~l~vDaN~~~--~~~~a~~l~~l  205 (368)
T c1sjaA_         146 LDVVGGYLDEGYVRIKLKIE---PGWDVEPVRAVRERF---------------GDDVLLQVDANTAY--TLGDAPQLARL  205 (368)
T ss_dssp             HHHHHHHHHHTCSCEEEECB---TTBSHHHHHHHHHHH---------------CSSSCEEEECTTCB--CGGGHHHHHTT
T ss_pred             HHHHHHHHHCCCCEEEEECC---HHHHHHHHHHHHHHC---------------CCCCEEEEECCCCC--CHHHHHHHHHH
T ss_conf             99999999679979999778---779999999999964---------------99978999768889--89999999973


Q ss_pred             HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEE
Q ss_conf             579899885262248889986418899999998619989995588989899999996198289
Q batch____       167 TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKV  229 (286)
Q Consensus       167 TgvD~LAvaiGt~HG~y~~~p~Ld~d~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki  229 (286)
                      ...+        .+=+.-.-|.-|++.++++++.+++|+.+ |=|=...++++++++.|...+
T Consensus       206 ~~~~--------i~~iEeP~~~~d~~~~~~l~~~~~~pia~-dEs~~~~~~~~~~~~~~~~d~  259 (368)
T c1sjaA_         206 DPFG--------LLLIEQPLEEEDVLGHAELARRIQTPICL-DESIVSARAAADAIKLGAVQI  259 (368)
T ss_dssp             GGGC--------CSCEECCBCTTCHHHHHHHTTTCSSCEEE-STTCCSHHHHHHHHHHTCCSE
T ss_pred             CCCC--------CEEECCCCCCCCHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHCCCCCE
T ss_conf             3388--------15811888806788899999874982984-776489999999997299979