Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	I	L	I	I	N	G	A	K	K	F	A	H	S	N	G	Q	L	N	D	T	L	T	E	V	A	D	G	T	L	R	D	L	G	H	D	V	R	I	V	R	A	D	S	D	Y	D	V	K	A	E	V	Q	N	F	L	W	A
Secondary structure
SS confidence
Disorder		?	?										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	V	V	I	W	Q	M	P	G	W	W	M	G	A	P	W	T	V	K	K	Y	I	D	D	V	F	T	E	G	H	G	T	L	Y	A	S	D	G	R	T	R	K	D	P	S	K	K	Y	G	S	G	G	L	V	Q	G	K	K	Y	M
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	S	L	T	W	N	A	P	M	E	A	F	T	E	K	D	Q	F	F	H	G	V	G	V	D	G	V	Y	L	P	F	H	K	A	N	Q	F	L	G	M	E	P	L	P	T	F	I	A	N	D	V	I	K	M	P	D	V	P	R	Y
Secondary structure
SS confidence
Disorder															?																																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.
Sequence		T	E	E	Y	R	K	H	L	V	E	I	F	G
Secondary structure
SS confidence
Disorder													?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rpe chain A Region: 1 - 192 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 67% PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. Phyre2 PDB 2amj chain D Region: 1 - 193 Aligned: 174 Modelled: 183 Confidence: 100.0% Identity: 98% PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 Phyre2 PDB 1qrd chain A Region: 1 - 192 Aligned: 174 Modelled: 192 Confidence: 100.0% Identity: 26% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1d4a chain A Region: 2 - 192 Aligned: 173 Modelled: 191 Confidence: 100.0% Identity: 26% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1dxq chain A Region: 2 - 192 Aligned: 173 Modelled: 187 Confidence: 100.0% Identity: 25% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3eyw chain A Region: 1 - 191 Aligned: 170 Modelled: 176 Confidence: 100.0% Identity: 24% PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff Phyre2 PDB 3ha2 chain B Region: 3 - 191 Aligned: 164 Modelled: 171 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a Phyre2 PDB 2qwx chain A domain 1 Region: 2 - 192 Aligned: 174 Modelled: 191 Confidence: 100.0% Identity: 25% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3f2v chain A Region: 2 - 191 Aligned: 167 Modelled: 175 Confidence: 100.0% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. Phyre2 PDB 3lcm chain B Region: 1 - 191 Aligned: 166 Modelled: 182 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 Phyre2 PDB 1t5b chain A Region: 1 - 191 Aligned: 167 Modelled: 191 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2hpv chain A Region: 2 - 191 Aligned: 165 Modelled: 167 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis Phyre2 PDB 3p0r chain A Region: 1 - 191 Aligned: 171 Modelled: 190 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne Phyre2 PDB 2z98 chain A domain 1 Region: 2 - 191 Aligned: 166 Modelled: 190 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2v9c chain A Region: 2 - 190 Aligned: 171 Modelled: 189 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. Phyre2 PDB 1rli chain A Region: 3 - 190 Aligned: 151 Modelled: 164 Confidence: 99.9% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein YwqN Phyre2 PDB 1rtt chain A Region: 1 - 189 Aligned: 149 Modelled: 154 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 3fvw chain A Region: 2 - 191 Aligned: 154 Modelled: 159 Confidence: 99.9% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. Phyre2 PDB 1sqs chain A Region: 2 - 191 Aligned: 152 Modelled: 156 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein SP1951 Phyre2 PDB 1nni chain 1 Region: 3 - 191 Aligned: 148 Modelled: 150 Confidence: 99.9% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 1 c3rpeA_ 2 c2amjD_ 3 d1qrda_ 4 d1d4aa_ 5 d1dxqa_ 6 c3eywA_ 7 c3ha2B_ 8 d2qwxa1 9 c3f2vA_ 10 c3lcmB_ 11 d1t5ba_ 12 c2hpvA_ 13 c3p0rA_ 14 d2z98a1 15 c2v9cA_ 16 d1rlia_ 17 d1rtta_ 18 c3fvwA_ 19 d1sqsa_ 20 d1nni1_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rpeA_ 100.0 67 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 2 c2amjD_ 100.0 98 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 3 d1qrda_ 100.0 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 4 d1d4aa_ 100.0 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 5 d1dxqa_ 100.0 25 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 6 c3eywA_ 100.0 24 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 7 c3ha2B_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 8 d2qwxa1 100.0 25 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 9 c3f2vA_ 100.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 10 c3lcmB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 11 d1t5ba_ 100.0 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 12 c2hpvA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 13 c3p0rA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 14 d2z98a1 100.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 15 c2v9cA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 16 d1rlia_ 99.9 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 17 d1rtta_ 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 18 c3fvwA_ 99.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 19 d1sqsa_ 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 20 d1nni1_ 99.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 21 c3k1yE_ not modelled 99.9 12 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 22 d1t0ia_ not modelled 99.8 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 23 c2vzhA_ not modelled 99.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 24 c2q62A_ not modelled 99.8 25 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 25 d1ydga_ not modelled 99.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 26 c2fzvC_ not modelled 99.7 21 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 27 d2fzva1 not modelled 99.7 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 28 c3b6iB_ not modelled 99.7 16 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 29 d2a5la1 not modelled 99.7 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 30 c2zkiH_ not modelled 99.6 20 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 31 d1e5da1 not modelled 99.6 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 32 c3d7nA_ not modelled 99.6 14 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 33 d1ycga1 not modelled 99.6 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 34 d1vmea1 not modelled 99.5 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 35 c2ohiB_ not modelled 99.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 36 c1ychD_ not modelled 99.5 19 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 37 d2arka1 not modelled 99.3 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 38 c2q9uB_ not modelled 99.3 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 39 c3klbA_ not modelled 99.3 20 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 40 c1e5dA_ not modelled 99.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 41 c1vmeB_ not modelled 99.2 8 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 42 c3fniA_ not modelled 99.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 43 c3hlyA_ not modelled 99.0 15 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 44 c3edoA_ not modelled 99.0 18 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 45 d2fz5a1 not modelled 98.7 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 46 d5nula_ not modelled 98.5 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 47 d1oboa_ not modelled 98.3 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 48 c3f6sI_ not modelled 98.2 16 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 49 d1b1ca_ not modelled 98.2 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 50 d1czna_ not modelled 98.2 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 51 c2hnbA_ not modelled 98.1 11 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 52 d1ag9a_ not modelled 98.1 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 53 d1bvyf_ not modelled 98.0 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 54 c1bvyF_ not modelled 98.0 14 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 55 c2wc1A_ not modelled 97.9 15 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 56 d1ykga1 not modelled 97.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 57 d1tlla2 not modelled 97.7 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 58 d1ja1a2 not modelled 97.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 59 d1f4pa_ not modelled 97.7 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 60 d2fcra_ not modelled 97.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 61 c3hr4C_ not modelled 97.6 13 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 62 d1yoba1 not modelled 97.3 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 63 d1fuea_ not modelled 96.5 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 64 c1j9zB_ not modelled 95.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 65 c1tllA_ not modelled 93.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 66 c3u80A_ not modelled 92.7 23 PDB header:unknown function Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii; PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum 67 c2bpoA_ not modelled 88.0 14 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 68 d1uqra_ not modelled 86.6 19 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 69 d2r4qa1 not modelled 71.6 17 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 70 d1uana_ not modelled 66.7 14 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 71 d2a9va1 not modelled 65.9 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 72 c3l4eA_ not modelled 63.3 13 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 73 c2kyrA_ not modelled 61.4 10 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 74 c2x2oA_ not modelled 61.4 16 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 75 c3s40C_ not modelled 59.9 19 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 76 d1qdlb_ not modelled 56.0 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 77 c3czcA_ not modelled 52.8 20 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 78 d2p1ra1 not modelled 50.6 22 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 79 c1tvmA_ not modelled 47.1 9 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 80 c3crnA_ not modelled 46.9 26 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 81 c2r60A_ not modelled 42.9 22 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 82 d2dlda2 not modelled 42.0 17 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 83 d2hrca1 not modelled 40.6 13 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 84 d1iiba_ not modelled 39.5 19 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 85 c2g76A_ not modelled 38.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of human 3-phosphoglycerate dehydrogenase 86 c3nbmA_ not modelled 38.4 13 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 87 c3dhnA_ not modelled 38.3 17 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 88 d2r48a1 not modelled 38.2 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 89 c3kklA_ not modelled 35.5 14 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 90 d2naca2 not modelled 34.5 26 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 91 c2l2qA_ not modelled 34.4 20 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 92 d1dxya2 not modelled 34.4 18 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 93 c3o1hB_ not modelled 34.1 16 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 94 c3lwzC_ not modelled 33.1 8 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 95 c3i42A_ not modelled 32.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 96 d1t4za_ not modelled 32.1 5 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 97 d1iowa1 not modelled 31.5 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 98 c3jteA_ not modelled 30.4 25 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 99 d1fyea_ not modelled 29.5 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 100 c2gcgB_ not modelled 29.4 11 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxylate reductase/hydroxypyruvate reductase; PDBTitle: ternary crystal structure of human glyoxylate2 reductase/hydroxypyruvate reductase 101 d1gtza_ not modelled 29.2 13 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 102 c3ia7A_ not modelled 28.6 23 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 103 c3oy2A_ not modelled 27.5 14 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 104 c2pv7B_ not modelled 26.7 27 PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution 105 d2hy5b1 not modelled 26.5 17 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 106 c2i5bC_ not modelled 26.2 40 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 107 d1n1ea2 not modelled 25.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 108 d2d1pa1 not modelled 25.1 23 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 109 c2f59B_ not modelled 24.9 24 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 110 c1jr2A_ not modelled 24.7 14 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 111 d1jr2a_ not modelled 24.7 14 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 112 c1tjnA_ not modelled 24.6 8 PDB header:lyase Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase; PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus 113 d1tjna_ not modelled 24.6 8 Fold:Chelatase-like Superfamily:Chelatase Family:CbiX-like 114 c2qsjB_ not modelled 23.0 19 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 115 c2jrlA_ not modelled 22.3 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0