14/01/2012 20:50:22 : INFO  : Run start: Sat Jan 14 20:50:21 GMT 2012
14/01/2012 20:50:27 : INFO  : Initialised job
14/01/2012 20:50:29 : INFO  : Renaming log file 'phyre2_20120114_205021.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/phyre_20120114_205021.log'
14/01/2012 20:50:30 : INFO  : Initialised job:
Sequence
>batch____
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA
ASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAG
SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILR
DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQS
HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAA
NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG

14/01/2012 20:50:31 : INFO  : Checked sequence
14/01/2012 20:50:33 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 20:50:34 : INFO  : PSI-BLAST 3 iterations
14/01/2012 20:52:28 : INFO  : PSI-BLAST 5 iterations
14/01/2012 20:54:46 : INFO  : Finished PSI-BLAST
14/01/2012 20:54:47 : INFO  : Running Buildali to generate a3m file
14/01/2012 21:03:55 : INFO  : Converting to HMM
14/01/2012 21:04:00 : INFO  : Calibrating HMM
14/01/2012 21:04:20 : INFO  : Searching HMM database
14/01/2012 21:14:00 : INFO  : Finished buildali
14/01/2012 21:14:01 : INFO  : Predicting secondary structure
14/01/2012 21:14:07 : INFO  : Predicted secondary structure (PSI-Pred)
14/01/2012 21:14:09 : INFO  : Predicting Disordered regions
14/01/2012 21:14:14 : INFO  : Predicted Disorder (Disopred)
14/01/2012 21:14:15 : INFO  : Running memsat_svm check
14/01/2012 21:16:53 : INFO  : Running memsat_svm full
14/01/2012 21:23:51 : INFO  : Predicted Transmembrane (memsat_svm) ID 'eda3e1311e20fe7b'
14/01/2012 21:23:52 : INFO  : Initialising fold library search
14/01/2012 21:23:56 : INFO  : Initialised search input
14/01/2012 21:23:58 : INFO  : Building Ensemble models
14/01/2012 21:24:01 : INFO  : Building hh.d2j13a1.model.1.pdb
14/01/2012 21:24:15 : INFO  : Building hh.d2iw0a1.model.2.pdb
14/01/2012 21:24:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.d2iw0a1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/d2iw0a1.2.pdb
14/01/2012 21:24:31 : INFO  : Building hh.d2cc0a1.model.3.pdb
14/01/2012 21:24:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.d2cc0a1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/d2cc0a1.3.pdb
14/01/2012 21:24:45 : INFO  : Building hh.c1w17A_.model.4.pdb
14/01/2012 21:24:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.c1w17A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/c1w17A_.4.pdb
14/01/2012 21:25:00 : INFO  : Building hh.c2iw0A_.model.5.pdb
14/01/2012 21:25:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.c2iw0A_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/c2iw0A_.5.pdb
14/01/2012 21:25:15 : INFO  : Building hh.c2c1iA_.model.6.pdb
14/01/2012 21:25:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.c2c1iA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/c2c1iA_.6.pdb
14/01/2012 21:25:30 : INFO  : Building hh.c3npfB_.model.7.pdb
14/01/2012 21:25:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.c3npfB_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/c3npfB_.13.pdb
14/01/2012 21:25:44 : INFO  : Building hh.c1xovA_.model.8.pdb
14/01/2012 21:25:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.c1xovA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/c1xovA_.15.pdb
14/01/2012 21:26:00 : INFO  : Building hh.c3m1uB_.model.9.pdb
14/01/2012 21:26:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/hh.c3m1uB_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/eda3e1311e20fe7b/c3m1uB_.31.pdb
14/01/2012 21:26:15 : INFO  : Building d2j13a1.1.pdb
14/01/2012 21:26:28 : INFO  : Building d2iw0a1.2.pdb
14/01/2012 21:26:41 : INFO  : Building d2cc0a1.3.pdb
14/01/2012 21:26:54 : INFO  : Building c1w17A_.4.pdb
14/01/2012 21:27:07 : INFO  : Building c2iw0A_.5.pdb
14/01/2012 21:27:20 : INFO  : Building c2c1iA_.6.pdb
14/01/2012 21:27:33 : INFO  : Building d1ny1a_.7.pdb
14/01/2012 21:27:45 : INFO  : Building c2w3zA_.8.pdb
14/01/2012 21:27:57 : INFO  : Building c2vyoA_.9.pdb
14/01/2012 21:28:08 : INFO  : Building d2c1ia1.10.pdb
14/01/2012 21:28:21 : INFO  : Building d2c71a1.11.pdb
14/01/2012 21:28:34 : INFO  : Building c3rxzA_.12.pdb
14/01/2012 21:28:45 : INFO  : Building c3npfB_.13.pdb
14/01/2012 21:28:59 : INFO  : Building c3qbuD_.14.pdb
14/01/2012 21:29:10 : INFO  : Building c1xovA_.15.pdb
14/01/2012 21:29:23 : INFO  : Building d1z7aa1.16.pdb
14/01/2012 21:29:34 : INFO  : Building c3s6oD_.17.pdb
14/01/2012 21:29:45 : INFO  : Building d2nlya1.18.pdb
14/01/2012 21:29:56 : INFO  : Building c2krsA_.19.pdb
14/01/2012 21:30:09 : INFO  : Building c2kt8A_.20.pdb
14/01/2012 21:32:13 : INFO  : Finished HH model building
14/01/2012 21:32:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
14/01/2012 21:33:19 : INFO  : html domain output complete ID 'eda3e1311e20fe7b'
14/01/2012 22:04:23 : INFO  : Run end  : Sat Jan 14 22:04:22 GMT 2012
