Phyre 2 Results for P76243

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Email | l.a.kelley@imperial.ac.uk
Description | P76243
Date | Thu Jan 5 12:21:10 GMT 2012
Unique Job ID | ed5bd02b743d537b

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template d1e8ca2
Top template information
Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
Confidence and coverage
Confidence: | 29.2% | Coverage: | 35%
40 residues ( 35% of your sequence) have been modelled with 29.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | I | Q | C | K | R | V | Y | D | P | A | E | Q | S | D | G | Y | R | I | L | V | D | R | L | W | P | R | G | I | K | K | T | D | L | A | L | D | E | W | D | K | E | I | T | P | S | T | E | L | R | K | A | F | H | G | E | V | V | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | .
Sequence |  | Y | A | T | F | R | E | Q | Y | L | A | E | L | A | Q | H | E | Q | E | G | K | R | L | A | D | I | A | K | K | Q | P | L | T | L | L | Y | S | A | K | N | T | T | Q | N | H | A | L | V | L | A | D | W | L | R | S | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1e8ca2 |

### PDB 1e8c chain A domain 2

Region: 76 - 115
Aligned: 40
Modelled: 40
Confidence: 29.2%
Identity: 13%
Fold: MurD-like peptide ligases, peptide-binding domain
Superfamily: MurD-like peptide ligases, peptide-binding domain
Family: MurCDEF C-terminal domain

Phyre2
2 |
| d1bsma2 |

### PDB 1bsm chain A domain 2

Region: 45 - 70
Aligned: 26
Modelled: 26
Confidence: 22.0%
Identity: 23%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
3 |
| d2gykb1 |

### PDB 2gyk chain B domain 1

Region: 60 - 82
Aligned: 23
Modelled: 23
Confidence: 17.9%
Identity: 22%
Fold: His-Me finger endonucleases
Superfamily: His-Me finger endonucleases
Family: HNH-motif

Phyre2
4 |
| d1sh0a_ |

### PDB 1sh0 chain A

Region: 48 - 76
Aligned: 29
Modelled: 29
Confidence: 16.1%
Identity: 21%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
5 |
| c2b43D_ |

### PDB 2b43 chain D

Region: 48 - 75
Aligned: 28
Modelled: 28
Confidence: 15.8%
Identity: 21%
PDB header:viral protein
Chain: D: PDB Molecule:non-structural polyprotein;
PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge

Phyre2
6 |
| d2nyba2 |

### PDB 2nyb chain A domain 2

Region: 45 - 70
Aligned: 26
Modelled: 26
Confidence: 15.3%
Identity: 19%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
7 |
| d1y67a2 |

### PDB 1y67 chain A domain 2

Region: 46 - 70
Aligned: 25
Modelled: 25
Confidence: 15.3%
Identity: 24%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
8 |
| d1idsa2 |

### PDB 1ids chain A domain 2

Region: 45 - 70
Aligned: 26
Modelled: 26
Confidence: 15.1%
Identity: 31%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
9 |
| c2c55A_ |

### PDB 2c55 chain A

Region: 42 - 60
Aligned: 19
Modelled: 19
Confidence: 15.0%
Identity: 32%
PDB header:viral protein
Chain: A: PDB Molecule:protein p6;
PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein

Phyre2
10 |
| c3nahC_ |

### PDB 3nah chain C

Region: 48 - 75
Aligned: 28
Modelled: 28
Confidence: 14.7%
Identity: 25%
PDB header:transferase
Chain: C: PDB Molecule:rna dependent rna polymerase;
PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase

Phyre2
11 |
| d1jr9a2 |

### PDB 1jr9 chain A domain 2

Region: 45 - 74
Aligned: 30
Modelled: 30
Confidence: 12.8%
Identity: 20%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
12 |
| d1gv3a2 |

### PDB 1gv3 chain A domain 2

Region: 45 - 70
Aligned: 26
Modelled: 26
Confidence: 12.3%
Identity: 12%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
13 |
| d1ix9a2 |

### PDB 1ix9 chain A domain 2

Region: 45 - 70
Aligned: 26
Modelled: 26
Confidence: 12.2%
Identity: 15%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
14 |
| d1wb8a2 |

### PDB 1wb8 chain A domain 2

Region: 46 - 74
Aligned: 29
Modelled: 29
Confidence: 12.1%
Identity: 10%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
15 |
| c2zfuA_ |

### PDB 2zfu chain A

Region: 45 - 74
Aligned: 30
Modelled: 30
Confidence: 11.6%
Identity: 10%
PDB header:nuclear protein
Chain: A: PDB Molecule:cerebral protein 1;
PDBTitle: structure of the methyltransferase-like domain of nucleomethylin

Phyre2
16 |
| d1p7ga2 |

### PDB 1p7g chain A domain 2

Region: 46 - 70
Aligned: 25
Modelled: 25
Confidence: 10.5%
Identity: 12%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
17 |
| d1uera2 |

### PDB 1uer chain A domain 2

Region: 42 - 70
Aligned: 29
Modelled: 29
Confidence: 10.1%
Identity: 21%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
18 |
| d1coja2 |

### PDB 1coj chain A domain 2

Region: 45 - 70
Aligned: 26
Modelled: 26
Confidence: 9.7%
Identity: 19%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
19 |
| d1b06a2 |

### PDB 1b06 chain A domain 2

Region: 46 - 74
Aligned: 29
Modelled: 29
Confidence: 9.7%
Identity: 10%
Fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), C-terminal domain

Phyre2
20 |
| d2jnga1 |

### PDB 2jng chain A domain 1

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 9.5%
Identity: 13%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: CPH domain

Phyre2
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22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
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33 |
34 |
35 |
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37 |
38 |
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47 |
48 |
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50 |
51 |
52 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1e8ca2 |
|  | 29.2 | 13 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
2 | d1bsma2 |
|  | 22.0 | 23 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
3 | d2gykb1 |
|  | 17.9 | 22 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
4 | d1sh0a_ |
|  | 16.1 | 21 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
5 | c2b43D_ |
|  | 15.8 | 21 | PDB header:viral protein Chain: D: PDB Molecule:non-structural polyprotein; PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge
6 | d2nyba2 |
|  | 15.3 | 19 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
7 | d1y67a2 |
|  | 15.3 | 24 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
8 | d1idsa2 |
|  | 15.1 | 31 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
9 | c2c55A_ |
|  | 15.0 | 32 | PDB header:viral protein Chain: A: PDB Molecule:protein p6; PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein
10 | c3nahC_ |
|  | 14.7 | 25 | PDB header:transferase Chain: C: PDB Molecule:rna dependent rna polymerase; PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase
11 | d1jr9a2 |
|  | 12.8 | 20 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
12 | d1gv3a2 |
|  | 12.3 | 12 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
13 | d1ix9a2 |
|  | 12.2 | 15 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
14 | d1wb8a2 |
|  | 12.1 | 10 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
15 | c2zfuA_ |
|  | 11.6 | 10 | PDB header:nuclear protein Chain: A: PDB Molecule:cerebral protein 1; PDBTitle: structure of the methyltransferase-like domain of nucleomethylin
16 | d1p7ga2 |
|  | 10.5 | 12 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
17 | d1uera2 |
|  | 10.1 | 21 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
18 | d1coja2 |
|  | 9.7 | 19 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
19 | d1b06a2 |
|  | 9.7 | 10 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
20 | d2jnga1 |
|  | 9.5 | 13 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:CPH domain
21 | c2xznT_ |
| not modelled | 9.5 | 19 | PDB header:ribosome Chain: T: PDB Molecule:rps19e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
22 | c2jufA_ |
| not modelled | 9.3 | 13 | PDB header:gene regulation Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein; PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto
23 | c2k4nA_ |
| not modelled | 9.2 | 35 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein pf0246; PDBTitle: nmr structure of protein pf0246 from pyrococcus furiosus:2 target pfr75 from the northeast structural genomics3 consortium
24 | d1unfx2 |
| not modelled | 8.7 | 24 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
25 | d2jb0b1 |
| not modelled | 8.5 | 19 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
26 | c7ceiB_ |
| not modelled | 8.5 | 19 | PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
27 | d2p4ka2 |
| not modelled | 8.4 | 23 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
28 | d1my6a2 |
| not modelled | 8.1 | 16 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
29 | c3h4rA_ |
| not modelled | 7.5 | 47 | PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease 8; PDBTitle: crystal structure of e. coli rece exonuclease
30 | d3sdpa2 |
| not modelled | 7.5 | 19 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
31 | c3bl9B_ |
| not modelled | 7.4 | 31 | PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493
32 | d1mnga2 |
| not modelled | 7.1 | 23 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
33 | c3iz6S_ |
| not modelled | 7.1 | 26 | PDB header:ribosome Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
34 | c3iz5N_ |
| not modelled | 7.1 | 43 | PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
35 | c1xmlA_ |
| not modelled | 7.0 | 31 | PDB header:chaperone Chain: A: PDB Molecule:heat shock-like protein 1; PDBTitle: structure of human dcps
36 | d1ohua_ |
| not modelled | 6.9 | 9 | Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death
37 | c2jofA_ |
| not modelled | 6.4 | 38 | PDB header:de novo protein Chain: A: PDB Molecule:trp-cage; PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein
38 | d1u09a_ |
| not modelled | 6.3 | 21 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
39 | c2kzuA_ |
| not modelled | 6.2 | 22 | PDB header:apoptosis Chain: A: PDB Molecule:death-associated protein 6; PDBTitle: daxx helical bundle (dhb) domain / rassf1c complex
40 | c1b06A_ |
| not modelled | 6.1 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: superoxide dismutase from sulfolobus acidocaldarius
41 | c1y6uA_ |
| not modelled | 5.8 | 33 | PDB header:dna binding protein Chain: A: PDB Molecule:excisionase from transposon tn916; PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
42 | d1iufa1 |
| not modelled | 5.6 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding
43 | c2nybC_ |
| not modelled | 5.6 | 19 | PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [fe]; PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution
44 | d1dt0a2 |
| not modelled | 5.6 | 17 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
45 | c1avmA_ |
| not modelled | 5.5 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide
46 | c2cw2B_ |
| not modelled | 5.3 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase 1; PDBTitle: crystal structure of superoxide dismutase from p. marinus
47 | c3tqjB_ |
| not modelled | 5.3 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [fe]; PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii
48 | d1vlra1 |
| not modelled | 5.2 | 31 | Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain
49 | c1my6A_ |
| not modelled | 5.2 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron (iii) superoxide dismutase; PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics
50 | c2gpcB_ |
| not modelled | 5.2 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi
51 | c2a03A_ |
| not modelled | 5.2 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei
52 | c1ma1E_ |
| not modelled | 5.1 | 19 | PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0