Phyre 2 alignment of P76243 with c1y6uA_

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Job Description | P76243
Confidence | 5.82% | Date | Thu Jan 5 12:21:10 GMT 2012
Rank | 41 | Aligned Residues | 18
% Identity | 33% | Template | c1y6uA_
PDB info | PDB header:dna binding protein | Chain: A: PDB Molecule:excisionase from transposon tn916; | PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | G | Y | R | I | L | V | D | R | L | W | P | R | G | I | K | K | T | D | L | A | L | D | E | W | D | K | E | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Sequence |  | G | N | R | I | Q | I | K | R | K | . | . | . | . | . | . | . | . | . | . | Q | F | E | K | I | I | D | T | L
Template Known Secondary structure |  | T | T |  |  |  |  |  | S |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  | T | S | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 47 | . | . | 50 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 60 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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