 |
| Job Description | P76055 | | Confidence | 38.69% | Date | Thu Jan 5 12:17:55 GMT 2012 |
| Rank | 131 | Aligned Residues | 89 |
| % Identity | 17% | Template | c2j289_ |
| PDB info |
PDB header:ribosome | Chain: 9: PDB Molecule:signal recognition particle 54; |
PDBTitle: model of e. coli srp bound to 70s rncs
|
| Resolution | 8.0 Å |
|
 |
|   |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
K | E | Q | Y | N | L | N | K | L | Q | K | R | L | R | R | N | V | G | E | A | I | A | D | F | N | M | I | E | E | G | D | R | I | M | . |
. |
V | C | L | S | G | G | K | D | S | Y | T | M | L | E | I | L | R | N | L | Q | Q | S | A | P | I | N | F | S | L | V | A | V | N | L | D | Q | K | Q | P | G | F | P | E | H |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |
|
|
|
|
| . | . |
|
|
|
|
|
|   |
|
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |   |
| . | . | . |
|   |
|   |
|
|   |
|
| Template Sequence |   |
P | G | Q | E | F | V | K | I | V | R | N | E | L | V | A | A | M | G | E | E | N | Q | T | L | N | L | A | A | Q | P | P | A | V | V | L | M | A | G | L | Q | G | A | G | K | T | T | S | V | G | K | L | G | K | F | L | R | E | K | H | K | K | K | V | L | V | V | S | A | D | . |
. |
. |
V | Y | R | P | A | A | I | K |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|
|
|
|
| S |
| S | S | S | S |
|  |  |  |  |  |
| S | S | S | S | S | S | T | T | T |  |  |  |  |  |  |  |  |  | T | S | S | S |
|
|
|
| B |
|
|
|
| . | . | . |
| S | S | S |
| S |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . |
|
|
|  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | |
|
|
. | 140 | . | . | . | . | . | . |
|   |
|   |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
V | L | P | E | Y | L | E | K | L | G | V | E | Y | K |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|   |   |
|   |   |   |
|
|
|   |   |
| Template Sequence |   |
Q | L | E | T | L | A | E | Q | V | G | V | D | F | F |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | T |
|
|
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
147 | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|