3 c1ni5A_ Probab=100.00  E-value=0  Score=369.76  Aligned_columns=261  Identities=15%

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC---HHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99970888888779999669700799999999999836998189999768879872---079999999970997899983
Q batch____        29 AIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGF---PEHVLPEYLEKLGVEYKIVEE  105 (311)
Q Consensus        29 ~i~~~~li~~gdkIlVavSGG~DS~~LL~lL~~l~~~~~~~~~i~av~id~g~~~~---~~~~~~~~~~~~gi~~~v~~~  105 (311)
                      +|..++|+.+||+|+||+|||+||||||++|..++.+.. ++++.++|+|||+++.   ++++++++|+++||||++.++
T Consensus         3 t~~~~~~~~~~~~vlva~SGG~DS~~Ll~~l~~~~~~~~-~~~l~~~hvdhglr~~s~~~~~~v~~~~~~~~i~~~~~~~   81 (433)
T c1ni5A_           3 TLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENP-GVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV   81 (433)
T ss_dssp             HHHHHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTST-TCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             314521768997799996797117999999999842048-9669999967588828588899999999970996899996


Q ss_pred             EHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEE-ECCCCCEEE
Q ss_conf             1147777751069998999999999999999997299899982421467999999874104002378503-013688269
Q batch____       106 NTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKL-MSDDGKHIV  184 (311)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~Rr~~l~~~a~~~g~~~Ia~gHh~DD~~ET~L~nl~rg~~l~gl~~~~-~~~~~~~~i  184 (311)
                      ++.       ..+.+.|+.||..||.+|.+.+.  ++++|+||||+||++||+|||++||+|++||.++. ....+++.+
T Consensus        82 ~~~-------~~~~~~e~~aR~~Ry~~~~~~~~--~~~~i~~aH~~dD~aEt~l~~l~rG~~~~gl~~~~~~~~~~~~~i  152 (433)
T c1ni5A_          82 QLA-------QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAXAEVSEFAGTRL  152 (433)
T ss_dssp             CCC-------CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEEETTEEE
T ss_pred             ECC-------CCCCCHHHHHHHHHHHHHHHHHH--HCCEEEEEECHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEE
T ss_conf             505-------46889989999999999999986--098499940435789999998623998433366700022589679


Q ss_pred             ECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             71466787999999999719978723888898632079999-99999999787789999999974208874136788788
Q batch____       185 IRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPNLQRQVIA-DMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFK  263 (311)
Q Consensus       185 iRPLl~v~k~eI~~ya~~~~lp~v~~d~~~~~~~~~Rn~ir-~~l~~le~~~P~~~~~i~~~~~~~~~~~~~~~~~~~~~  263 (311)
                      ||||++++|+||..||+.++|||+ +|+||.++.|.||+|| +++|.|++.||++..++.++++.+.++.-...++..  
T Consensus       153 iRPLl~~~k~eI~~y~~~~~l~~~-eD~sN~~~~y~RNriR~~iiP~L~~~np~~~~~i~~~a~~l~e~~~~l~~~a~--  229 (433)
T c1ni5A_         153 IRPLLARTRGELVQWARQYDLRWI-EDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLA--  229 (433)
T ss_dssp             ECGGGSCCHHHHHHHHHHTTCCCB-CCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCEE-ECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf             805767989999999998089757-17898687206899987867898887776789899999999999999999999--


Q ss_pred             HHHHHHHHHCCCHHHHHHCCCCCCCCHHCHHHHHHHHCHHEE
Q ss_conf             643001221331021121000012110070012310010003
Q batch____       264 GITHGSEVVNGGDLAFDREEIPLQPACWQPEEDENQLDELRL  305 (311)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~wq~~~~~~~~~~~r~  305 (311)
                         .........+..++.+.+...+..+|...-...+.....
T Consensus       230 ---~~l~~~~~~~~~~~~~~~~~l~~~~~~~ilr~~l~~~~~  268 (433)
T c1ni5A_         230 ---DDLAHCQSPQGTLQIVPXLAXSDARRAAIIRRWLAGQNA  268 (433)
T ss_dssp             ---HHHHHHBCSSSCEESGGGTTSCHHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf             ---999851256876984000258988999999999987088