39 d1rifa_ Probab=98.01   E-value=0.00022  Score=45.68  Aligned_columns=119  Identities=13%

Q ss_pred             CCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             99899999999960898079997287988127899999999851000794699980417999999986996011898852
Q batch____       969 LTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLH 1048 (1756)
Q Consensus       969 Lt~~Q~~Av~~ilts~dr~~~i~G~AGTGKTT~L~av~~~l~~~~~~~g~~V~~lAPT~kAA~~L~~~Gi~a~Tias~L~ 1048 (1756)
                      |.+-|..++..++...+  .+|.++-|+|||.+.-.++..+..   ..+.+++.++|+..-+....+      .+.+|+.
T Consensus       114 lr~yQ~~~i~~~l~~~~--~ii~~~tGsGKT~~~~~~i~~~~~---~~~~~~lii~p~~~L~~q~~~------~~~~~~~  182 (282)
T d1rifa_         114 PHWYQKDAVFEGLVNRR--RILNLPTSAGRSLIQALLARYYLE---NYEGKILIIVPTTALTTQMAD------DFVDYRL  182 (282)
T ss_dssp             CCHHHHHHHHHHHHHSE--EEECCCTTSCHHHHHHHHHHHHHH---HCSSEEEEECSSHHHHHHHHH------HHHHHTS
T ss_pred             CCHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHH------HHHHHCC
T ss_conf             78889999999984798--599936888137999999999974---279809999552899999999------9998607


Q ss_pred             CCCCCCCCCCCCCCCCC----------------------------EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             11012345555466787----------------------------899956231898899999999751598799952
Q batch____      1049 DTQLQQRSGETPDFSNT----------------------------LFLLDESSMVGNTDMARAYALIAAGGGRAVASG 1098 (1756)
Q Consensus      1049 ~~~~~~~~~~~~~~~~~----------------------------vlIVDEAsMv~~~~~~~Ll~~a~~~garvVlvG 1098 (1756)
                      .................                            ++|||||-...+..+..++.....+..|+-|.|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~iii~t~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~lglTa  260 (282)
T d1rifa_         183 FSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSG  260 (282)
T ss_dssp             CCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECS
T ss_pred             CCCCCEEECCCCCCCHHCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             577420000167530001134357889739999887884231252899838002768338999982243785999853