BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1180 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P08394 Exodeoxyribonuclease V beta chain n=100 Tax=Ente... 2429 0.0 UniRef50_A4TLB8 DNA helicase/exodeoxyribonuclease V, beta subuni... 1467 0.0 UniRef50_C5BH93 Exodeoxyribonuclease V, beta subunit, putative n... 1343 0.0 UniRef50_A7K3N4 Exodeoxyribonuclease V, beta subunit n=67 Tax=Ga... 1061 0.0 UniRef50_Q1LST8 Exodeoxyribonuclease V, beta subunit n=2 Tax=Gam... 981 0.0 UniRef50_Q493D5 Exonuclease V n=1 Tax=Candidatus Blochmannia pen... 965 0.0 UniRef50_C4L7B3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Tol... 946 0.0 UniRef50_Q2BKD8 ATP-dependent exoDNAse beta subunit n=1 Tax=Nept... 906 0.0 UniRef50_A1SUW1 DNA helicase/exodeoxyribonuclease V, beta subuni... 855 0.0 UniRef50_Q8D2T8 RecB protein n=1 Tax=Wigglesworthia glossinidia ... 827 0.0 UniRef50_Q7VRE9 Exonuclease V, beta chain n=1 Tax=Candidatus Blo... 825 0.0 UniRef50_Q8K9A9 Exodeoxyribonuclease V beta chain n=5 Tax=Buchne... 805 0.0 UniRef50_A6W0A9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Mar... 780 0.0 UniRef50_A3YGC7 Exodeoxyribonuclease V, 135 kDa subunit n=3 Tax=... 778 0.0 UniRef50_D2BZV4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Dic... 771 0.0 UniRef50_A8FUM4 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gam... 760 0.0 UniRef50_Q1QYD3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chr... 748 0.0 UniRef50_B4X4Z1 Exodeoxyribonuclease V, beta subunit n=1 Tax=Alc... 739 0.0 UniRef50_B0TRK3 Exodeoxyribonuclease V, beta subunit n=4 Tax=She... 738 0.0 UniRef50_A4XTT1 DNA helicase/exodeoxyribonuclease V, beta subuni... 734 0.0 UniRef50_Q080D8 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gam... 728 0.0 UniRef50_C0QI07 RecB n=1 Tax=Desulfobacterium autotrophicum HRM2... 726 0.0 UniRef50_Q0HJB9 Exodeoxyribonuclease V, beta subunit n=11 Tax=Sh... 725 0.0 UniRef50_Q0AGC8 DNA helicase/exodeoxyribonuclease V, beta subuni... 719 0.0 UniRef50_A4CBT2 Exonuclease V, beta chain with recC and recD: 5'... 718 0.0 UniRef50_Q65TK4 RecB protein n=1 Tax=Mannheimia succiniciproduce... 712 0.0 UniRef50_Q89AB3 Exodeoxyribonuclease V beta chain n=2 Tax=Bacter... 710 0.0 UniRef50_C9PR37 Exodeoxyribonuclease V beta subunit n=1 Tax=Past... 704 0.0 UniRef50_A1S6V0 Exodeoxyribonuclease V, beta subunit n=1 Tax=She... 702 0.0 UniRef50_A1WWI3 DNA helicase/exodeoxyribonuclease V, beta subuni... 702 0.0 UniRef50_A6VNJ9 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pas... 698 0.0 UniRef50_P45157 Exodeoxyribonuclease V beta chain n=17 Tax=Haemo... 690 0.0 UniRef50_C9R4S1 Exodeoxyribonuclease V, beta subunit n=5 Tax=Pas... 688 0.0 UniRef50_Q3IJ14 Exonuclease V, beta chain with recC and recD: 5'... 681 0.0 UniRef50_A1TWK0 DNA helicase/exodeoxyribonuclease V, beta subuni... 680 0.0 UniRef50_Q12LP4 Exodeoxyribonuclease V, beta subunit n=3 Tax=Gam... 679 0.0 UniRef50_C8KZ30 Exodeoxyribonuclease V beta chain n=2 Tax=Actino... 668 0.0 UniRef50_C5SAK7 Exodeoxyribonuclease V, beta subunit n=1 Tax=All... 665 0.0 UniRef50_B0BTM4 Exodeoxyribonuclease V, beta subunit n=6 Tax=Pas... 664 0.0 UniRef50_A4JS84 DNA helicase/exodeoxyribonuclease V, beta subuni... 660 0.0 UniRef50_C0N789 Exodeoxyribonuclease V, beta subunit n=1 Tax=Met... 655 0.0 UniRef50_B5JRL3 Exodeoxyribonuclease V, beta subunit n=1 Tax=gam... 652 0.0 UniRef50_Q0I3D6 DNA helicase/exodeoxyribonuclease V, beta subuni... 650 0.0 UniRef50_A7JVG0 Exodeoxyribonuclease V n=3 Tax=Mannheimia haemol... 647 0.0 UniRef50_Q2SQD6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hah... 645 0.0 UniRef50_Q5QUQ8 ATP-dependent exoDNAse (Exonuclease V) beta subu... 642 0.0 UniRef50_A9BRA9 Exodeoxyribonuclease V, beta subunit n=4 Tax=Com... 627 e-177 UniRef50_A4SEL9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chl... 621 e-176 UniRef50_Q1N2R0 Exodeoxyribonuclease V beta chain n=1 Tax=Berman... 619 e-175 UniRef50_C5JAU7 Exodeoxyribonuclease V, beta subunit n=1 Tax=unc... 619 e-175 UniRef50_C1D6T6 RecB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 619 e-175 UniRef50_A1AQY7 DNA helicase/exodeoxyribonuclease V, beta subuni... 616 e-174 UniRef50_Q2LTC8 Exodeoxyribonuclease V beta chain n=1 Tax=Syntro... 588 e-166 UniRef50_A4VRQ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Pse... 587 e-166 UniRef50_Q60AZ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Met... 583 e-164 UniRef50_B5EPU6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Aci... 583 e-164 UniRef50_C7I4N6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Thi... 578 e-163 UniRef50_C7LVF7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 572 e-161 UniRef50_B1XZ25 Exodeoxyribonuclease V, beta subunit n=1 Tax=Lep... 571 e-161 UniRef50_Q74CY7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Geo... 569 e-160 UniRef50_D0KVH3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hal... 567 e-160 UniRef50_A8ZX09 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 562 e-158 UniRef50_C3X2X2 ATP-dependent exoDNAse beta subunit n=2 Tax=Oxal... 557 e-157 UniRef50_B8FB94 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 547 e-154 UniRef50_Q3B472 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pel... 546 e-153 UniRef50_Q057F5 Exodeoxyribonuclease V, b chain n=1 Tax=Buchnera... 542 e-152 UniRef50_Q1NY14 Exodeoxyribonuclease V, beta subunit n=2 Tax=del... 534 e-149 UniRef50_B3ECZ4 Exodeoxyribonuclease V, beta subunit n=5 Tax=Chl... 532 e-149 UniRef50_Q15V10 DNA helicase/exodeoxyribonuclease V, beta subuni... 520 e-145 UniRef50_Q6ANK1 Related to exodeoxyribonuclease V, beta chain n=... 517 e-145 UniRef50_B4RTM1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Bac... 509 e-142 UniRef50_C6NU55 Exodeoxyribonuclease V beta chain n=1 Tax=Acidit... 505 e-141 UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=P... 498 e-139 UniRef50_Q7NQR1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Chr... 494 e-137 UniRef50_A4B915 Exodeoxyribonuclease V, beta subunit n=1 Tax=Rei... 491 e-137 UniRef50_Q3JU29 Exodeoxyribonuclease V, beta subunit n=25 Tax=ps... 479 e-133 UniRef50_C8R0F2 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 479 e-133 UniRef50_C4ZM86 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pro... 472 e-131 UniRef50_B5EAR6 Exodeoxyribonuclease V, beta subunit n=5 Tax=Geo... 472 e-131 UniRef50_Q480N9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Col... 458 e-127 UniRef50_A7NB27 Exodeoxyribonuclease V, beta subunit n=21 Tax=Fr... 454 e-125 UniRef50_A6DNF2 Exodeoxyribonuclease V, 135 kDa subunit n=1 Tax=... 447 e-124 UniRef50_C7PDT4 Exodeoxyribonuclease V n=1 Tax=Chitinophaga pine... 434 e-119 UniRef50_A9M3L9 Exodeoxyribonuclease V beta subunit n=30 Tax=Nei... 427 e-117 UniRef50_C1SHH7 ATP-dependent exonuclease V beta subunit, helica... 407 e-111 UniRef50_C4GIJ8 Putative uncharacterized protein n=1 Tax=Kingell... 406 e-111 UniRef50_B2I7Y5 UvrD/REP helicase n=11 Tax=Xanthomonadaceae RepI... 392 e-107 UniRef50_D1N1Q3 Exodeoxyribonuclease V n=1 Tax=Victivallis vaden... 391 e-106 UniRef50_B0RMH9 Exodeoxyribonuclease V beta chain n=8 Tax=Xantho... 388 e-106 UniRef50_B5JHV0 UvrD/REP helicase domain protein n=1 Tax=Verruco... 385 e-105 UniRef50_UPI0000E0F57F exodeoxyribonuclease V, beta subunit n=1 ... 384 e-104 UniRef50_C1ACJ1 Exodeoxyribonuclease V beta subunit n=1 Tax=Gemm... 382 e-104 UniRef50_C6HV35 UvrD/REP helicase n=1 Tax=Leptospirillum ferrodi... 335 8e-90 UniRef50_C0ZQ88 Exodeoxyribonuclease V beta chain n=6 Tax=Coryne... 333 2e-89 UniRef50_A3YYL1 UvrD/REP helicase-like protein n=1 Tax=Synechoco... 331 1e-88 UniRef50_Q05XZ6 Putative uncharacterized protein n=1 Tax=Synecho... 323 2e-86 UniRef50_A2C8A3 Possible UvrD/REP helicase subunit B n=2 Tax=Pro... 320 2e-85 UniRef50_D0SDD3 Exonuclease subunit V n=2 Tax=Acinetobacter RepI... 310 2e-82 UniRef50_A1KCB1 ATP-dependent exoDNAse beta subunit n=3 Tax=Beta... 303 2e-80 UniRef50_Q0IBA6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Syn... 302 5e-80 UniRef50_B5IMW6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Cya... 296 3e-78 UniRef50_A5GLW9 Exodeoxyribonuclease V beta chain n=2 Tax=Synech... 295 7e-78 UniRef50_A3ETY5 Putative exodeoxyribonuclease V, beta subunit n=... 292 4e-77 UniRef50_A6W6P2 Exodeoxyribonuclease V, beta subunit n=2 Tax=Act... 291 1e-76 UniRef50_P96920 Exodeoxyribonuclease V beta chain n=28 Tax=Actin... 291 1e-76 UniRef50_B0VLS1 Exonuclease V, beta chain n=13 Tax=Acinetobacter... 289 4e-76 UniRef50_D1R7X5 Putative uncharacterized protein n=1 Tax=Parachl... 289 5e-76 UniRef50_Q3AX66 DNA helicase/exodeoxyribonuclease V, beta subuni... 286 4e-75 UniRef50_D0L8X3 Exodeoxyribonuclease V n=1 Tax=Gordonia bronchia... 276 5e-72 UniRef50_UPI0001C3224E exodeoxyribonuclease V, beta subunit n=1 ... 274 1e-71 UniRef50_C0DS65 Putative uncharacterized protein n=1 Tax=Eikenel... 271 1e-70 UniRef50_A9BB02 Possible UvrD/REP helicase subunit B n=2 Tax=Pro... 271 2e-70 UniRef50_Q6A850 Exodeoxyribonuclease V beta chain n=3 Tax=Propio... 257 2e-66 UniRef50_A7BUG4 Exodeoxyribonuclease V beta subunit n=1 Tax=Begg... 246 3e-63 UniRef50_A5WES0 DNA helicase/exodeoxyribonuclease V, beta subuni... 242 8e-62 UniRef50_Q6MFB6 Putative exodeoxyribonuclease V beta chain n=1 T... 236 3e-60 UniRef50_A5GUA0 Exodeoxyribonuclease V beta chain n=1 Tax=Synech... 236 4e-60 UniRef50_D0SSR4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Aci... 230 3e-58 UniRef50_C8PVF0 UvrD/REP helicase n=1 Tax=Enhydrobacter aerosacc... 229 7e-58 UniRef50_A5EXI1 Exonuclease V, beta subunit n=1 Tax=Dichelobacte... 227 2e-57 UniRef50_B2S0X7 Exodeoxyribonuclease V beta chain n=5 Tax=Borrel... 219 7e-55 UniRef50_Q6FF16 Exonuclease V, beta chain n=2 Tax=Acinetobacter ... 214 2e-53 UniRef50_B0SIS6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Lep... 210 3e-52 UniRef50_O51578 Exodeoxyribonuclease V beta chain n=20 Tax=Borre... 207 2e-51 UniRef50_Q46K42 DNA helicase/exodeoxyribonuclease V, beta subuni... 205 9e-51 UniRef50_Q04UR1 Exodeoxyribonuclease V, beta chain n=4 Tax=Lepto... 202 6e-50 UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ac... 193 4e-47 UniRef50_Q7U7R4 Probable exodeoxyribonuclease V, beta subunit Re... 189 5e-46 UniRef50_C9RQA8 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succi... 182 5e-44 UniRef50_O84645 Exodeoxyribonuclease V beta chain n=9 Tax=Chlamy... 175 9e-42 UniRef50_C8NA25 UvrD/REP helicase n=1 Tax=Cardiobacterium homini... 167 3e-39 UniRef50_UPI0001699643 ATP-dependent exoDNAse beta subunit n=1 T... 166 4e-39 UniRef50_D0LU04 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 161 1e-37 UniRef50_Q4FSN0 DNA helicase/exodeoxyribonuclease V, beta subuni... 161 2e-37 UniRef50_Q9Z7G7 Exodeoxyribonuclease V beta chain n=5 Tax=Chlamy... 153 4e-35 UniRef50_A7BUG7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Beg... 152 1e-34 UniRef50_A2BX90 Possible UvrD/REP helicase subunit B n=7 Tax=Pro... 151 2e-34 UniRef50_B2KE90 UvrD/REP helicase n=1 Tax=Elusimicrobium minutum... 138 2e-30 UniRef50_C0QTS0 Putative UvrD/REP helicase n=1 Tax=Persephonella... 134 2e-29 UniRef50_D1C5W8 UvrD/REP helicase n=1 Tax=Sphaerobacter thermoph... 132 6e-29 UniRef50_B1YKM8 ATP-dependent helicase/nuclease subunit A n=1 Ta... 119 6e-25 UniRef50_B8IZF9 UvrD/REP helicase n=1 Tax=Desulfovibrio desulfur... 118 2e-24 UniRef50_B9EAN8 Putative uncharacterized protein n=1 Tax=Macroco... 117 2e-24 UniRef50_A5ZAT8 Putative uncharacterized protein n=1 Tax=Eubacte... 115 9e-24 UniRef50_C8XGW9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Nak... 115 1e-23 UniRef50_Q13F62 UvrD/REP helicase n=3 Tax=Alphaproteobacteria Re... 114 2e-23 UniRef50_C1SHH6 ATP-dependent exonuclease V beta subunit, helica... 114 2e-23 UniRef50_Q1WRS0 ATP-dependent helicase/nuclease subunit A n=3 Ta... 114 3e-23 UniRef50_A6FXM6 ATP-dependent DNA helicase, UvrD/REP family prot... 112 7e-23 UniRef50_Q03NA7 ATP-dependent helicase/nuclease subunit A n=1 Ta... 111 2e-22 UniRef50_C2D6U3 Putative uncharacterized protein n=1 Tax=Atopobi... 109 7e-22 UniRef50_C4L3Q8 Recombination helicase AddA n=1 Tax=Exiguobacter... 108 9e-22 UniRef50_Q02D20 UvrD/REP helicase n=1 Tax=Candidatus Solibacter ... 108 1e-21 UniRef50_C8W759 UvrD/REP helicase n=1 Tax=Atopobium parvulum DSM... 108 2e-21 UniRef50_A6LPC4 ATP-dependent helicase/nuclease subunit A n=4 Ta... 107 3e-21 UniRef50_C5CHI0 Exodeoxyribonuclease V n=1 Tax=Kosmotoga olearia... 106 6e-21 UniRef50_Q1Q4K9 Similar to ATP-dependent DNA helicase subunit Ad... 105 1e-20 UniRef50_A2ST33 UvrD/REP helicase n=1 Tax=Methanocorpusculum lab... 104 2e-20 UniRef50_Q71X99 ATP-dependent helicase/nuclease subunit A n=17 T... 104 2e-20 UniRef50_Q8ERW5 ATP-dependent helicase/nuclease subunit A n=1 Ta... 104 2e-20 UniRef50_C0EKZ7 Putative uncharacterized protein n=1 Tax=Neisser... 103 4e-20 UniRef50_C6PW57 UvrD/REP helicase n=1 Tax=Clostridium carboxidiv... 103 4e-20 UniRef50_A8SI11 Putative uncharacterized protein n=1 Tax=Faecali... 103 4e-20 UniRef50_A3CVM7 UvrD/REP helicase n=1 Tax=Methanoculleus marisni... 102 7e-20 UniRef50_UPI0001C4301D ATP-dependent nuclease subunit A n=1 Tax=... 102 7e-20 UniRef50_A1HTK7 UvrD-like DNA helicase, C terminal n=1 Tax=Therm... 102 1e-19 UniRef50_B0NWV2 Putative uncharacterized protein n=2 Tax=Clostri... 102 1e-19 UniRef50_B0PD60 Putative uncharacterized protein n=1 Tax=Anaerot... 101 2e-19 UniRef50_A7VJ43 Putative uncharacterized protein n=1 Tax=Clostri... 100 3e-19 UniRef50_Q9K8M6 ATP-dependent nuclease subunit A n=1 Tax=Bacillu... 100 3e-19 UniRef50_B9XFA1 Recombination helicase AddA n=1 Tax=bacterium El... 100 3e-19 UniRef50_D2RKU1 Exodeoxyribonuclease V n=1 Tax=Acidaminococcus f... 99 9e-19 UniRef50_B8KMM2 Putative UvrD/REP helicase n=1 Tax=gamma proteob... 99 1e-18 UniRef50_A8VW69 Phospholipase D/Transphosphatidylase n=1 Tax=Bac... 99 1e-18 UniRef50_C5C3C8 UvrD/REP helicase n=1 Tax=Beutenbergia cavernae ... 98 2e-18 UniRef50_C8S137 Double-strand break repair helicase AddA n=1 Tax... 98 2e-18 UniRef50_C0Z545 ATP-dependent nuclease subunit A n=1 Tax=Breviba... 98 2e-18 UniRef50_Q2FNI4 UvrD/REP helicase n=1 Tax=Methanospirillum hunga... 97 4e-18 UniRef50_A6WGC8 UvrD/REP helicase n=1 Tax=Kineococcus radiotoler... 97 4e-18 UniRef50_D0BK91 ATP-dependent nuclease subunit A n=2 Tax=Granuli... 97 5e-18 UniRef50_C7HA04 ATP-dependent exoDNAse beta subunit n=1 Tax=Faec... 97 5e-18 UniRef50_Q88U41 ATP-dependent helicase/nuclease subunit A n=3 Ta... 97 5e-18 UniRef50_Q5WEU2 ATP-dependent exoDNAse beta subunit n=1 Tax=Baci... 97 6e-18 UniRef50_A0AL18 ATP-dependent helicase/nuclease subunit A n=3 Ta... 97 6e-18 UniRef50_Q16CX8 ATP-dependent DNA nuclease, putative n=31 Tax=Pr... 96 8e-18 UniRef50_Q4L4Y3 ATP-dependent helicase/nuclease subunit A n=65 T... 95 1e-17 UniRef50_A7BUG6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Beg... 95 1e-17 UniRef50_B2IGN4 Double-strand break repair helicase AddA n=1 Tax... 95 2e-17 UniRef50_Q5GTB1 ATP-dependent exoDNAse (Exonuclease V) beta subu... 95 2e-17 UniRef50_B2A610 ATP-dependent helicase/nuclease subunit A n=1 Ta... 94 3e-17 UniRef50_C0GDI3 Recombination helicase AddA n=1 Tax=Dethiobacter... 94 3e-17 UniRef50_A8PMU3 UvrD/REP helicase n=1 Tax=Rickettsiella grylli R... 94 4e-17 UniRef50_Q73RK3 ATP-dependent DNA helicase, UvrD/Rep family n=2 ... 94 4e-17 UniRef50_B8GTW0 UvrD/REP helicase n=1 Tax=Thioalkalivibrio sp. H... 94 5e-17 UniRef50_A6NVW3 Putative uncharacterized protein n=1 Tax=Bactero... 93 5e-17 UniRef50_A5D1P3 ATP-dependent helicase/nuclease subunit A n=2 Ta... 93 6e-17 UniRef50_A6CDV1 UvrD/REP helicase n=1 Tax=Planctomyces maris DSM... 93 6e-17 UniRef50_B9NIQ2 Predicted protein n=1 Tax=Populus trichocarpa Re... 93 6e-17 UniRef50_C1TNJ9 ATP-dependent exonuclease V beta subunit, helica... 93 7e-17 UniRef50_C6XMV6 Double-strand break repair helicase AddA n=1 Tax... 92 9e-17 UniRef50_A2RH77 ATP-dependent helicase/nuclease subunit A n=4 Ta... 92 1e-16 UniRef50_D2EH37 Recombination helicase AddA n=1 Tax=Pediococcus ... 92 1e-16 UniRef50_Q1GWU1 UvrD/REP helicase n=1 Tax=Sphingopyxis alaskensi... 92 1e-16 UniRef50_UPI000169903F exonuclease V, beta chain with recC and r... 92 2e-16 UniRef50_D2MLK1 DNA helicase, UvrD/REP type n=1 Tax=Candidatus P... 91 2e-16 UniRef50_C8PEY7 Ribonucleoside-diphosphate reductase beta chain ... 91 2e-16 UniRef50_UPI00016C0036 Recombination helicase AddA n=1 Tax=Epulo... 91 2e-16 UniRef50_Q38X69 ATP-dependent helicase/nuclease subunit A n=1 Ta... 91 2e-16 UniRef50_C7GAA3 ATP-dependent nuclease subunit A n=2 Tax=Rosebur... 91 3e-16 UniRef50_A4SC83 UvrD/REP helicase n=1 Tax=Chlorobium phaeovibrio... 91 3e-16 UniRef50_D1B7B6 Exodeoxyribonuclease V n=1 Tax=Thermanaerovibrio... 91 4e-16 UniRef50_B4UFR2 UvrD/REP helicase n=3 Tax=Anaeromyxobacter RepID... 91 4e-16 UniRef50_Q03D71 ATP-dependent helicase/nuclease subunit A n=1 Ta... 90 5e-16 UniRef50_B8GFE8 UvrD/REP helicase n=1 Tax=Methanosphaerula palus... 90 5e-16 UniRef50_A7IJM3 UvrD/REP helicase n=12 Tax=Alphaproteobacteria R... 90 6e-16 UniRef50_A0LJ26 DNA helicase/exodeoxyribonuclease V, subunit A n... 89 8e-16 UniRef50_Q2GL78 ATP-dependent DNA helicase, UvrD/Rep family n=6 ... 89 8e-16 UniRef50_D1PLS3 ATP-dependent deoxyribonuclease subunit A n=1 Ta... 89 8e-16 UniRef50_C6P6T0 UvrD/REP helicase n=1 Tax=Sideroxydans lithotrop... 89 1e-15 UniRef50_C1XFM8 ATP-dependent exonuclease V beta subunit, helica... 89 1e-15 UniRef50_C9XK50 ATP-dependent DNA helicase n=5 Tax=Clostridium R... 89 1e-15 UniRef50_A3SZB5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Sul... 89 1e-15 UniRef50_C7RGF9 UvrD/REP helicase n=3 Tax=Anaerococcus RepID=C7R... 89 1e-15 UniRef50_Q3A3V6 ATP-dependent exoDNase (Exonuclease V) beta subu... 89 1e-15 UniRef50_D1BPN9 Recombination helicase AddA n=3 Tax=Veillonella ... 88 2e-15 UniRef50_C4V2E5 ATP-dependent deoxyribonuclease subunit A n=2 Ta... 88 2e-15 UniRef50_C5RAZ6 ATP-dependent deoxyribonuclease, subunit A n=1 T... 88 2e-15 UniRef50_UPI0001C314BB UvrD/REP helicase n=1 Tax=Conexibacter wo... 88 2e-15 UniRef50_B3WEJ1 ATP-dependent helicase/nuclease subunit A n=8 Ta... 88 2e-15 UniRef50_A7BUG5 UvrD/REP helicase n=1 Tax=Beggiatoa sp. PS RepID... 88 2e-15 UniRef50_A6UEI6 Double-strand break repair helicase AddA n=17 Ta... 87 3e-15 UniRef50_B1MZM2 ATP-dependent helicase/nuclease subunit A n=3 Ta... 87 3e-15 UniRef50_A7IKI6 Double-strand break repair helicase AddA n=2 Tax... 87 4e-15 UniRef50_A8U8N0 Exonuclease RexA n=3 Tax=Lactobacillales RepID=A... 87 4e-15 UniRef50_UPI0001BC38AF DNA helicase II / ATP-dependent DNA helic... 87 5e-15 UniRef50_B0KGK9 UvrD/REP helicase n=1 Tax=Pseudomonas putida GB-... 87 5e-15 UniRef50_A7Z3H2 YjcD n=3 Tax=Bacillus RepID=A7Z3H2_BACA2 87 6e-15 UniRef50_UPI0000510074 ATP-dependent exonuclase V beta subunit, ... 86 7e-15 UniRef50_A8STY9 Putative uncharacterized protein n=1 Tax=Coproco... 86 7e-15 UniRef50_A9WKU6 DNA helicase II n=2 Tax=Bacteria RepID=A9WKU6_RENSM 86 8e-15 UniRef50_B6BUB9 UvrD/REP helicase, putative n=1 Tax=beta proteob... 86 9e-15 UniRef50_Q3SMQ5 Putative uncharacterized protein n=2 Tax=Proteob... 86 1e-14 UniRef50_A7HPC8 Double-strand break repair helicase AddA n=1 Tax... 85 2e-14 UniRef50_Q8RCZ0 ATP-dependent helicase/nuclease subunit A n=3 Ta... 85 2e-14 UniRef50_C9LQY5 ATP-dependent nuclease subunit A n=1 Tax=Dialist... 85 2e-14 UniRef50_Q0BQJ4 ATP-dependent nuclease subunit A n=1 Tax=Granuli... 84 3e-14 UniRef50_C1D2W1 Putative ATP-dependent nuclease subunit A (AddA)... 84 3e-14 UniRef50_C0CXS0 Putative uncharacterized protein (Fragment) n=1 ... 84 4e-14 UniRef50_C0GCZ7 UvrD/REP helicase n=1 Tax=Dethiobacter alkaliphi... 84 4e-14 UniRef50_A8EXT1 ATP-dependent helicase n=14 Tax=Rickettsia RepID... 84 4e-14 >UniRef50_P08394 Exodeoxyribonuclease V beta chain n=100 Tax=Enterobacteriaceae RepID=EX5B_ECOLI Length = 1180 Score = 2429 bits (6295), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1180/1180 (100%), Positives = 1180/1180 (100%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL Sbjct: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ Sbjct: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA Sbjct: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV Sbjct: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA Sbjct: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS Sbjct: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY Sbjct: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS Sbjct: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 Query: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL Sbjct: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL Sbjct: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM Sbjct: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS Sbjct: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL Sbjct: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 Query: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR Sbjct: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN Sbjct: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE Sbjct: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 Query: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE Sbjct: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD Sbjct: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY Sbjct: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA Sbjct: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 >UniRef50_A4TLB8 DNA helicase/exodeoxyribonuclease V, beta subunit n=80 Tax=cellular organisms RepID=A4TLB8_YERPP Length = 1220 Score = 1467 bits (3799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 738/1190 (62%), Positives = 907/1190 (76%), Gaps = 22/1190 (1%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+PL LPL GERLIEASAGTGKTFTI LYLRLLLGLGG AAF RPL VEE+LVVTFT Sbjct: 7 QRLEPLALPLYGERLIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRRPLMVEEILVVTFT 66 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAAT ELRGRIR NIH LRIAC+R +D+P+Y+ LL EI D A AA LL AERQMDEAA Sbjct: 67 EAATEELRGRIRDNIHGLRIACVRGVSDDPMYQALLAEITDWAVAAAQLLAAERQMDEAA 126 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 ++TIHGFCQRML NAFESG+LFEQ L++DE L QACADFWRRHCYPLP IA+ V + Sbjct: 127 IYTIHGFCQRMLANNAFESGILFEQTLVQDELPLWRQACADFWRRHCYPLPLVIARAVSQ 186 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 W GP+ALL D++ YLQGE P + P DDET+ SRH +V +ID +K +WR A EL+A Sbjct: 187 EWSGPEALLSDLSAYLQGETPKFRQAPGDDETILSRHQHVVTQIDALKAEWRLAAPELEA 246 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 LI SG+D+R ++ + W++K+ WAE+ET YQLP+ LEKF Q L ++TK G P Sbjct: 247 LISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPKELEKFRQSVLLEKTKKGA-AP 305 Query: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE 365 +H LF AID + +PL++RDL++ RA++EIR +V +EKR+R ELGFDD+LS+LD+AL+ Sbjct: 306 QHTLFSAIDSIFEQPLTLRDLILARAISEIRFSVQQEKRQRAELGFDDLLSKLDAALQQS 365 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA 425 GE+LA +IRTR+PVAMIDEFQDTDPQQYRIF ++ Q ALLLIGDPKQAIYAFRGA Sbjct: 366 GGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTVYGGQEACALLLIGDPKQAIYAFRGA 425 Query: 426 DIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ 485 DIFTY++ARSEV AHYTL+TNWRS+ MV SVN+LFS + F+F +IPFI V +A KN Sbjct: 426 DIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNRLFSLVNTPFLFEQIPFINVAAAKKNH 485 Query: 486 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD 545 L F KGE QPA+ WL G+ GV +YQ MA+ CAAQIRDWL AGQ+G+A L+ Sbjct: 486 DLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 545 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 +PV+ASDI++LVRSR EAA +RDAL+ L IPSVYLSNRDSVFET EA+++LWLLQAV+ Sbjct: 546 PKPVQASDITILVRSRAEAALIRDALSALAIPSVYLSNRDSVFETTEAKDLLWLLQAVLA 605 Query: 606 PERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM 665 PE+E LRSA+AT ++GL+A ++ LN+DE AWD +V+EFD YRQ W++RGV+PMLR +M Sbjct: 606 PEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQRRGVLPMLREMM 665 Query: 666 SARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 725 + R++AENLLAT GGERRLTD+LH+ ELLQEA +QL+SEHAL+RWL+Q I +P+ + SQ Sbjct: 666 ARRHLAENLLATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPNPQSDSQ 725 Query: 726 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPE 785 Q+RLESD+HLV++VTIHKSKGLEYPLVWLPFI NFR Q+ YHDRHSFEA+LDLNA E Sbjct: 726 QLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEALLDLNADEE 785 Query: 786 SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG 845 S LAE ERLAEDLRLLYVALTRSV+HCS+G+APL++ K+G++D+H+SALG L+Q G Sbjct: 786 SQALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQGESDMHRSALGYLVQHG 845 Query: 846 EPQDAAGLRTCIEALC---DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWR 902 +P DA L + L + DI + D++PWQ + EL A+ R D WR Sbjct: 846 QPGDAHVLSEKLTELARSSNGDICVSPVEPPDDKPWQPQPEALPELTARHFTRKMQDYWR 905 Query: 903 VTSYSGLQQRG-----HGIA------------QDLMPRLDVDAAGVASVV-EEPTLTPHQ 944 VTSYSGLQQ G +G A Q L+PRLD+DA G +VV E+ LTPH Sbjct: 906 VTSYSGLQQSGSTKKLYGSATGDVSQALGAPLQVLLPRLDIDAVGEQAVVTEDDHLTPHT 965 Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE 1004 FPRGA+PGTFLH L E LDF+QP++ W+ E+L+ GF QW PVL +W+ ++Q PL + Sbjct: 966 FPRGAAPGTFLHDLLEPLDFSQPIELAWLSERLQQQGFSEQWAPVLHQWLNDIVQTPLTD 1025 Query: 1005 TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 TG +L+ LS KQ E++FYLPI L A LD LI+Q+DPLS CP L+F QVRGMLKG Sbjct: 1026 TGATLAGLSPERKQAELQFYLPIDSLLRAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKG 1085 Query: 1065 FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 FIDLVF +G+YYLLDYKSNWLGEDS AYT +AM AM HRYDLQYQLYTLALHRYLRH Sbjct: 1086 FIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAMTQAMAEHRYDLQYQLYTLALHRYLRH 1145 Query: 1125 RIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 R+ADYDY+ HFGGVIYLFLRGVD++H GI+ RP LI MD +F+G Sbjct: 1146 RLADYDYQRHFGGVIYLFLRGVDQQHSGHGIFNCRPEQKLIEEMDRLFSG 1195 >UniRef50_C5BH93 Exodeoxyribonuclease V, beta subunit, putative n=12 Tax=Enterobacteriaceae RepID=C5BH93_EDWI9 Length = 1199 Score = 1343 bits (3477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/1176 (59%), Positives = 864/1176 (73%), Gaps = 8/1176 (0%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 +TLDPL LPL G RLIEASAGTGKTFT+AALYLRLLLGLG A+PRPL VEE+LVVTFT Sbjct: 18 QTLDPLTLPLYGARLIEASAGTGKTFTLAALYLRLLLGLGEENAYPRPLAVEEILVVTFT 77 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAAT ELRGRIRSNIH LR+ACLR +D+PL LL +I D+A AA LL AERQMDEAA Sbjct: 78 EAATEELRGRIRSNIHALRLACLRGESDHPLLTDLLAQIADQALAASLLLAAERQMDEAA 137 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 ++TIHGFCQRML+ NAFESG+LF+Q L++DE LR QACADFWRRHCYPL ++A+ V + Sbjct: 138 IYTIHGFCQRMLSHNAFESGVLFQQTLLQDELPLRRQACADFWRRHCYPLSADLAEAVSQ 197 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 W GP+ALL ++ YL GE P+++ P ETLA RH ++ARI+ VK WR+ ++ Sbjct: 198 LWSGPEALLAELQPYLSGEMPLLRPAPDAQETLAQRHQVLLARIERVKATWREHEHQVVG 257 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 LI +SG+D+R ++ KW+D++S WA+ E+ YQLP ++ +F+Q L ++T + GE P Sbjct: 258 LIAASGVDKRSYSSRYLPKWLDEMSVWAQAESRDYQLPSAIARFAQATLLEKT-SKGEPP 316 Query: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE 365 RH +F I+ LLAEPLS+RDLV+ RAL EIR+ V EKRRR ELGFDD+L+RLD AL Sbjct: 317 RHSVFTEIESLLAEPLSLRDLVLARALGEIRDGVQLEKRRRAELGFDDLLTRLDQALGGA 376 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH----HQPETALLLIGDPKQAIYA 421 G LAAAIR R+PVAMIDEFQDTDP QYRIF+RI+ ETALLLIGDPKQAIYA Sbjct: 377 GGAALAAAIRQRYPVAMIDEFQDTDPLQYRIFQRIYTADDARSSETALLLIGDPKQAIYA 436 Query: 422 FRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA 481 FRGADIFTY++AR+ V A YTL+TNWRSAPG+V +VN LF + + F+F EIPF+PV SA Sbjct: 437 FRGADIFTYLRARAAVDACYTLETNWRSAPGVVQAVNALFLRLEAPFLFAEIPFLPVASA 496 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 N R GE Q AM +WL + C +Y TMA+ CAAQIRDWL AGQRG A L Sbjct: 497 AANAGRRLTIDGEPQSAMALWLYDVPGCTAQEYLQTMARCCAAQIRDWLSAGQRGTARLT 556 Query: 542 NGDDARPVRA---SDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 GDD + RA +D+++LVRSR EA +RDAL+ L IPSVYLSNRDSVF T EA+++LW Sbjct: 557 GGDDGKAGRALCAADMTILVRSRHEATVMRDALSALNIPSVYLSNRDSVFSTPEARDLLW 616 Query: 599 LLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVM 658 LLQA++TP + TLRSALA ++GL+A ++ L+ DE WD VV+EFDGYR+ W++RGV+ Sbjct: 617 LLQAILTPAQSRTLRSALAVGLLGLDAAALDALSQDERRWDAVVDEFDGYRRQWQRRGVL 676 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP 718 PMLR L+ R +AENLLATAGGERRLTD+LH+ ELLQEA QL+SE ALVRWL+Q I P Sbjct: 677 PMLRELIGRRRLAENLLATAGGERRLTDVLHLGELLQEAAAQLDSEPALVRWLAQQIDSP 736 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVL 778 A SQQMRLESD+HLVQ++TIHKSKGLE+PLV+LPF+ FR Q Q YHDR + +AVL Sbjct: 737 QPQAESQQMRLESDRHLVQVITIHKSKGLEFPLVFLPFVATFRRQRQGLYHDRVTHQAVL 796 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 DL A +++ LA+ ERLAEDLRLLYVA+TR+V+HC+LG+APLV K+ ++D+H A+ Sbjct: 797 DLCADDDALALADQERLAEDLRLLYVAVTRAVYHCALGIAPLVSGNRRKQDESDLHHGAI 856 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPG 898 G LLQ+ E DA GL+ ++ L +D I + + PWQ V L A+ R Sbjct: 857 GYLLQRAEACDAEGLKQALQTLSNDPIHLEILSPCEGTPWQAEPVPPRALCARRFTRRLQ 916 Query: 899 DNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSL 958 D+WRVTSYS LQQ G +L+PRLD+DAAG + H FPRGA+PGTFLH L Sbjct: 917 DDWRVTSYSALQQHGGSTYLELLPRLDIDAAGENRTAAATIFSAHTFPRGAAPGTFLHDL 976 Query: 959 FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ 1018 E LDF DP W+ E+ G + W P L +W+T +LQ PL+E+G++LS L+ +Q Sbjct: 977 LEKLDFAAAPDPVWLAEQCLAQGIDLAWVPTLAQWLTQILQTPLDESGLTLSHLAPSQRQ 1036 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 E++FYLPI+ PL A LD LIR+ D LSA C L F QV GMLKGFIDLVF H GRYYL Sbjct: 1037 PELQFYLPIARPLRAEALDALIRRHDALSAQCEALAFSQVEGMLKGFIDLVFCHRGRYYL 1096 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 LDYKSNWLGED +AYT AMAAAM AHRYDLQYQLYTLALHRYLRHR+ DYDY+ HFGGV Sbjct: 1097 LDYKSNWLGEDRAAYTPPAMAAAMIAHRYDLQYQLYTLALHRYLRHRLVDYDYQRHFGGV 1156 Query: 1139 IYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 Y FLRG+ P QG++ RP L+ +D +FAG Sbjct: 1157 FYCFLRGMAGVEPGQGVFACRPEEALVTALDALFAG 1192 >UniRef50_A7K3N4 Exodeoxyribonuclease V, beta subunit n=67 Tax=Gammaproteobacteria RepID=A7K3N4_VIBSE Length = 1227 Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/1201 (47%), Positives = 784/1201 (65%), Gaps = 40/1201 (3%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPR-PLTVEELLVVTFTE 66 L+P+ PL G RLIEASAGTGKTFTIA LYLRLLLG G + R PLTV+++LVVTFTE Sbjct: 25 LEPMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTE 84 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AATAELR RIR+ IH+ RIA R + +P+ + LL E DD QAA+ LL AERQMDEAAV Sbjct: 85 AATAELRDRIRARIHDARIAFARGQSSDPVIQPLLNEFDDHKQAAEILLQAERQMDEAAV 144 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIHGFCQRML NAFESG F + + DES L+ Q AD+WRR+ YPLP +A + + Sbjct: 145 YTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKSQVVADYWRRNFYPLPFTLAGEIRQL 204 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 W P ALL DI+ YL G AP+ + P +LA H + + +ID +K QWR++ + L Sbjct: 205 WGSPSALLSDISNYLTG-APLSLSVPAMKGSLADLHTENLKKIDELKAQWRESQDDFLTL 263 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I S I++R + + + W++ ++AWA ET Y P+ LEKF+Q L ++T G P+ Sbjct: 264 ISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEKTPKGS-APQ 322 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 H +FEAI+ LA P+S++ ++ A+ R +A K ++ L FDD+L++L +++ ++ Sbjct: 323 HAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQLSASIDTDE 382 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 E+LAA IRT +PVAMIDEFQDTDP QY IF RI+ + PE L +IGDPKQAIY FRGAD Sbjct: 383 SELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNNPECGLFMIGDPKQAIYGFRGAD 442 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-REIPFIPVKSAGKNQ 485 IFTY+KAR++V AHYTL TNWRS+ MV +VN++F+ D F++ +IPF+PVK + + Sbjct: 443 IFTYIKARNQVSAHYTLGTNWRSSADMVQAVNQVFALPDSPFIYDSDIPFLPVKYSPNAE 502 Query: 486 ALRFVFKGETQPAMKMWLMEGESCGV--GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 + G+ QPA+ WL E + + G+Y + MA+ A+QI+ L Q+G+A L+NG Sbjct: 503 KRIWTMGGQKQPALTYWLQEADDKPLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNG 562 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 + + V+A DI+VLVR+ E ++ AL I SVYLSNRDSVF + AQ++ LLQAV Sbjct: 563 EKQKAVQAGDIAVLVRTGSEGRMIKQALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAV 622 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRA 663 +TPE + LR++LA+ + L+A ++ LNNDE W+ V EF YR++W +RGV+PMLRA Sbjct: 623 LTPENDRALRASLASELFALDAASLDALNNDEVVWENAVNEFKEYRKLWVQRGVLPMLRA 682 Query: 664 LMSARNIAENLLATAG------GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILE 717 ++S R+IAE LL GER LTD++HI ELLQ+A +L+S+H L+RWL+Q I + Sbjct: 683 VISKRHIAERLLEEGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISD 742 Query: 718 PDS---NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSF 774 ++ + Q RLES+++LVQIVTIHKSKGLEY LV+LPF+ ++R +A Y+D + Sbjct: 743 AENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFSYREASEAKYYDAAND 802 Query: 775 EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 VLD+ S+ A+ ERLAEDLRL+YVALTR+V+ C +G +PL R K+ T VH Sbjct: 803 RTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKE-PTGVH 861 Query: 835 QSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTA------EL 888 +SA+G L+Q G+ G+ + L D P Q+ + A +L Sbjct: 862 RSAIGYLIQNGQ---EGGINDLHQGLTQQQDELDCVVVAD-PPQQLEEKYVAPQEEIHDL 917 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRG-HGIAQDL---MPRLDVDAAGVASVVE--EPTLTP 942 +AK LQ NWR+TSYSGL ++G H D + D+D++ + EP + Sbjct: 918 SAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLLEPERSI 977 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFES-----QWEPVLTEWITAV 997 FPRGA PGTFLHSLFE+++FTQP ++ LG ES +W P+L + I V Sbjct: 978 FTFPRGARPGTFLHSLFEEIEFTQPATTE-ENTQIILGLMESEQLDEEWLPILQQLIDTV 1036 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 L PL+ + L+Q + + VEMEF LPI E L A L+ +I++ DPLSA L F Sbjct: 1037 LATPLDGKSLLLNQKAPSQRLVEMEFLLPI-EVLSAPALNRVIQRHDPLSAKAGDLGFQT 1095 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 V+GMLKGFIDLVF H+G+YY+LD+KSN LG+D ++Y +A+ +AM HRYDLQYQ+Y LA Sbjct: 1096 VQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALA 1155 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 LHR+LR R+A+Y YE HFGGV YLFLRG+D + GI+ +P + MD + G L Sbjct: 1156 LHRFLRSRLANYQYEQHFGGVYYLFLRGMDGQ-SDHGIFAAKPTLEFLQEMDRLIDGQVL 1214 Query: 1178 E 1178 E Sbjct: 1215 E 1215 >UniRef50_Q1LST8 Exodeoxyribonuclease V, beta subunit n=2 Tax=Gammaproteobacteria RepID=Q1LST8_BAUCH Length = 1183 Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/1193 (44%), Positives = 751/1193 (62%), Gaps = 38/1193 (3%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 ++P+ L L+ LIEASAGTGKT+T+ LYLRLLLG+GG +A+ RPL++ E+L+VTFTEA Sbjct: 1 MNPITLQLKQHCLIEASAGTGKTYTLVILYLRLLLGIGGLSAYHRPLSITEILLVTFTEA 60 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A E+R RI IH LRI+C+ +++PL LL +I + A LL AE+Q++EAA+F Sbjct: 61 AIKEIRSRIHDTIHRLRISCVCGYSNDPLLAALLLQIKNIPLAINQLLAAEQQINEAAIF 120 Query: 128 TIHGFCQRMLNLN--AFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 TIHGFCQRMLN+N ES ++QL+ED++ L Q DFWRR+C PLP +A++V + Sbjct: 121 TIHGFCQRMLNINYNLLESSFWSQKQLLEDDTHLLQQVVTDFWRRYCSPLPDSVARIVQQ 180 Query: 186 TWKGPQALLRDINRYLQG---EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 W GP LL + YL E+ ++ ++ H +I+ ID +K+QW + + Sbjct: 181 YWTGPDQLLTSLLPYLHNMHIESIIVSDQLITTASIIDHHNKIINYIDALKKQWLLFMQQ 240 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 I+ I+ + W KIS WA + T Y +P LE+ + L + Sbjct: 241 WSIFIQYIPIN--GICKKTALNWKKKISIWANKLTVDYAIPIELERLN-YLLCNTNTLPV 297 Query: 303 ETPRHPLFEAIDQL-LAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 E H F+ + + L S+++ ++ A+ EI ++ +EK + + F D+L D+ Sbjct: 298 EIRDHLFFKELAKFYLNYQFSLQEFILRLAINEIIPSLEKEKNLKNIMSFHDLLKDFDNI 357 Query: 362 LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421 L S GE+ A IR+R+PVAMIDEFQD DP QYRIF+R++ T LLLIGDPKQAIY+ Sbjct: 358 LTSNHGEIFANFIRSRYPVAMIDEFQDIDPLQYRIFKRLYDLTKNTVLLLIGDPKQAIYS 417 Query: 422 FRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA 481 FRGADIFTY+ AR V YTLDTNWRSAPGMVN+VN+LF F+F EIPF P ++ Sbjct: 418 FRGADIFTYIHARKLVKECYTLDTNWRSAPGMVNAVNQLFQSLPIPFIFSEIPFKPAVAS 477 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 N L+F+ + QPAM +WL + GV YQ +MA CAA I WL++ G A L Sbjct: 478 AFNSNLQFMLDEKAQPAMLLWLQASNNVGVAHYQKSMAHQCAATISYWLRSSNAGLAWLE 537 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 + + ++ASDI VLVR+R EAA + DA+T L I SVY+S+ SVF+T+EA+E++ LLQ Sbjct: 538 SNKGRKQLQASDIVVLVRNRDEAALINDAMTALSIKSVYVSSFSSVFQTIEAREIMCLLQ 597 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A++ PE+ N LR ALATS++G IE+ N +E + +F+ Y +IW++ G++PML Sbjct: 598 AIVEPEQHNKLRCALATSLLGGEVDVIESFNINEKINNKWRGKFNLYHKIWQQHGILPML 657 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 R ++ +IAE L++ GER +T++LH+ ELLQ+A Q ++E+ALVRWLS I +P+ Sbjct: 658 RHIIIENHIAEFWLSSYSGERCITNVLHLGELLQQASVQFDNEYALVRWLSVKITDPNDK 717 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 +QQ+ LE+ +LV I+TIHKSKGLE+PLV LPF +NFR ++ + +HDR + A LDL+ Sbjct: 718 DKNQQLWLENHHNLVHIITIHKSKGLEFPLVLLPFASNFRSKKHSMFHDRQLYPAGLDLS 777 Query: 782 AAPESVDLAEAE-RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 AP S++L E + RLAEDLRLLYVA+TRS++HC +G+AP+ +D+H SALG Sbjct: 778 IAPNSMNLTEDDKRLAEDLRLLYVAVTRSIYHCCIGIAPIYHGYSKITSTSDLHLSALGY 837 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVND-----------VSTAELN 889 L+Q+G +A LR+ +E L GD ++N V+ EL+ Sbjct: 838 LIQQGNAGNAIFLRSQLEKLL-------VRAEGDISLCEINKSPLSHTIVSIPVANLELS 890 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIA--------QDLMPRLDVDAAGVASVVEEPTLT 941 A+ L D W++TSY+ LQ+ + Q L ++VD + E LT Sbjct: 891 ARHLPINLFDRWQITSYTELQKNTAVTSIRFNDKAQQQLYSNINVDLLNHQQYITE--LT 948 Query: 942 PHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAP 1001 H FP G G FLHS+FE +DF++ +D + +L + W VL +W+ V+ AP Sbjct: 949 QHTFPCGKLAGKFLHSIFETIDFSKQIDSTQLSLELTKHNIDQCWLLVLQQWLHKVITAP 1008 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 LN + +SLS+L RN E+ F LPI+ L A +D L + +DPLS CP L+F V+GM Sbjct: 1009 LNNSNLSLSKLDHRNYCTELPFLLPINTTLRAQDMDKLCKNYDPLSLRCPTLDFTPVKGM 1068 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 L G IDLVF + RYYLLDYKSN LGEDSSAYT++A+ AM HRY+LQYQLYTLALHRY Sbjct: 1069 LTGVIDLVFCWQNRYYLLDYKSNRLGEDSSAYTKEAIEQAMIQHRYELQYQLYTLALHRY 1128 Query: 1122 LRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 +RHR+ +YDY+ FGG+ YLF+RG++ P + IYT RP+ LI +D+MF G Sbjct: 1129 MRHRLVNYDYQRDFGGIFYLFIRGIELNLPIESIYTYRPDISLINKLDQMFNG 1181 >UniRef50_Q493D5 Exonuclease V n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493D5_BLOPB Length = 1187 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1185 (41%), Positives = 734/1185 (61%), Gaps = 16/1185 (1%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ L LPL G LIEASAGTGKT+T+ +Y+RLLL LG + F RPLTV+E+LVVTFT+ Sbjct: 3 NLNVLELPLYGINLIEASAGTGKTYTLIIIYIRLLLCLGNRSDFSRPLTVKEILVVTFTK 62 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 +A ELR RIR NIH+ R+ C+R + N L+ +LL +I + A L AE+++++A++ Sbjct: 63 SAVRELRHRIRENIHQFRLDCMRGYSHNFLFSKLLLQIHNVELAINQLSEAEKKINQASI 122 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 FTIH FCQ +LN N E MLF ++++E++L QAC DFWRR+ Y LP IA+++ E Sbjct: 123 FTIHSFCQNILNHNTIELNMLFNTNIVDNETILYQQACTDFWRRNFYSLPLNIARLIQEY 182 Query: 187 WKGPQALLRDINRYLQGEAPVIKA----PPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 WK P +LL DI Y+ + D +++ + + +I+ ++ VK++W Sbjct: 183 WKDPNSLLNDIIPYIYRARSNLDCYNHNVHEDKKSIITYYEKILDHVNHVKKEWLKNKHN 242 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 + ++ S I+RR +N+SN +WID+I+ W + T + P L++F L+ + Sbjct: 243 IITILNSYDINRRIYNKSNLIRWIDRINQWVKRPTIDHTTPNDLQRFRTTELKIHNNSNK 302 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362 LF+++++L ++ S + + A+ EI + + R E+ +D++ L L Sbjct: 303 SDYICTLFDSVEKLYSQLSSFKTSIFKIAINEIHNDLNNTQHYRSEITLNDLVDVLAHHL 362 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF 422 + LA +RTR+PV +IDEFQDTD QQ++IF +++ E L+LIGDPKQ+IYAF Sbjct: 363 VKDKDNKLAHILRTRYPVTLIDEFQDTDCQQFKIFSTLYNSDSENGLILIGDPKQSIYAF 422 Query: 423 RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG 482 RGADIF+YMK R V Y L+ NWRS+ +VN+VN+LF + F+F +IPFIP +A Sbjct: 423 RGADIFSYMKIRRTVCNKYNLNINWRSSLNIVNAVNQLFQLVSNPFIFEDIPFIPSVTAS 482 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 +N RF+ ++Q AM WL E +GDY+ +MAQ CA + + L + G A L N Sbjct: 483 RNSMYRFLINNQSQTAMCFWLHPDEIVTIGDYKRSMAQECATILYNLLHEIRNGTAWLEN 542 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 R + SDI+VLVR+ +EA+ + AL+ + I +V+LSN ++FET+E+ E+ LL+A Sbjct: 543 DKYKRKLEISDITVLVRNHEEASLICSALSKVNISTVFLSNHKNIFETMESYELSLLLRA 602 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLR 662 ++ PE +T+ +AL T GLNA DIE++NN+E + + E+F Y +W+K+GV M++ Sbjct: 603 ILFPE-SHTICTALTTVFFGLNATDIESINNNESKQERIFEKFFEYYSVWKKKGVYLMIQ 661 Query: 663 ALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 ++ + E LL+T GE L +ILH+ ELLQ+A QL+ EHAL+ WL I +P + Sbjct: 662 KVIFDHKVPEKLLSTRVGESSLINILHLGELLQDAARQLQDEHALMEWLILKITQPKNKK 721 Query: 723 SS-QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 +S Q +RL SD L++I TIHKSKGLE+PL++LPFI +F + F+HDR S++ L+ N Sbjct: 722 TSDQNLRLGSDHQLIKISTIHKSKGLEFPLIFLPFIADFNYVKNPFFHDRKSYKTHLNFN 781 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG-DTDVHQSALGR 840 + + LA+ ERL+EDLRLLYVA+TRS++HCS+G+ P+VRR K + D+H SALG Sbjct: 782 TSKSHLTLADEERLSEDLRLLYVAVTRSIYHCSIGIGPIVRRYKKKSNTNNDLHHSALGY 841 Query: 841 LLQKGEPQDAAGLRTCIEAL---CDDDIAWQTAQTGDNQPWQVNDVSTAE-LNAKTLQRL 896 L+QK +AA L+ ++ L + DI+++ + V++ + L K + Sbjct: 842 LIQKKTSGNAATLKKHLKKLSVYSNGDISFRIISKSQELFSHASSVASNQLLCGKKWKTS 901 Query: 897 PG-DNWRVTSYSGLQQRGHGIAQ--DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGT 953 P W +TS+S LQ G+ +L +LD+ + + S E LTPH FP+G G+ Sbjct: 902 PNVIPWSITSFSALQHTDVGVTTYLNLEKQLDI-SEHIQSQENEIPLTPHTFPKGKVCGS 960 Query: 954 FLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLS 1013 F HS+F+ LDF + VD W+ +E + W V+ EWI VL PLN ++L+Q+ Sbjct: 961 FFHSIFQVLDFRKLVDMKWLYAHMERYNIDPIWGFVVREWIYIVLNTPLNN-NLTLAQII 1019 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 NK+ E++FYL I+ L + +LD L +++DP+S L F+ + GMLKGFIDL+FR Sbjct: 1020 PENKKTELKFYLSINTYLTSEELDHLCKKYDPVSRKSSSLTFLDITGMLKGFIDLIFRWN 1079 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 RYYLLDYK+NWLG+++ Y + M H Y LQYQLYTLALHR+LR+R+ Y+YE Sbjct: 1080 HRYYLLDYKTNWLGDNNKDYVGSKIRQEMIKHHYALQYQLYTLALHRFLRNRLVSYNYEK 1139 Query: 1134 HFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 FGGV YLF+RG+D GIY RP + I +D +F+ L Sbjct: 1140 DFGGVYYLFIRGMDGTPLSNGIYFFRPLSTFINKLDNLFSKNNLN 1184 >UniRef50_C4L7B3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B3_TOLAT Length = 1175 Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/1185 (46%), Positives = 736/1185 (62%), Gaps = 39/1185 (3%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVVTFTE 66 LD L PL G RLIEASAGTGKT+TIA LYLRLLLG G G AAF PL V+ +LVVTFTE Sbjct: 5 LDILTFPLGGLRLIEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVVTFTE 64 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AATAELR RI I + R A +D+ L + L+ E D+ A + LL AERQMDEAA+ Sbjct: 65 AATAELRQRILKAIRDTRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMDEAAI 124 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIHGFCQRML NAFESG LF+ + + +E LR A ADFWR Y +AQ + + Sbjct: 125 YTIHGFCQRMLTQNAFESGSLFDNEFLTEEQTLRAGAVADFWRHITYQADALLAQALLDH 184 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 WKGP+ LLR+I+ +L ++ P ETLA RH I++R++ ++ W+ A GEL++L Sbjct: 185 WKGPEDLLREISPHLALSG--LQCQPRTAETLAERHQAIISRLNMFREAWQAAAGELESL 242 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I S +D+R +++ N W+ K+ W +SY LP+ L +F+ L ++K+G P Sbjct: 243 ISGSDVDKRSYSKKNLPNWLQKVGDWVNAPLSSYSLPKELSRFAGNELAAKSKSG-TVPS 301 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 HPLF I+ LLA+P I D+VI AL ++R + ++K R+ +L FDD+L+ L AL SE Sbjct: 302 HPLFAQIETLLAQPNDIDDVVIADALTQVRARLQQQKLRQQQLSFDDLLTNLARALNSER 361 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 G +LA IR ++PVAMIDEFQDTDP QY+IF ++ H PE +IGDPKQAIYAFRGAD Sbjct: 362 GVLLAERIREQYPVAMIDEFQDTDPLQYQIFSTLYAHNPECGFYMIGDPKQAIYAFRGAD 421 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE-IPFIPVKSAGKNQ 485 IFTYM+A+ +V AHYTL TN+RS +V +VN LF+ + F++++ IPF V++ GK Sbjct: 422 IFTYMQAKQQVAAHYTLQTNFRSTDELVTAVNALFAHSGAPFIYQQDIPFEAVRAKGKKA 481 Query: 486 ALRFVFKGETQPAMKMWL---MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 FV +G Q A++ GE G YQ MA AAQI WL Q+ +A L Sbjct: 482 G--FVLQGLPQTALQCCFPLEGTGEVSGAA-YQQRMALAAAAQIHTWLVGAQQQQATL-- 536 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 D +P+R +DI+VLVRS +EAA ++ AL I SVYLSNR+SVF AQ++ LL+A Sbjct: 537 --DGKPLRPNDIAVLVRSGREAAVMQQALRECGIASVYLSNRESVFAQAVAQDVARLLEA 594 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLR 662 + P+ E +R+A+AT + G + LN+DE W+ VE ++WR RG++PMLR Sbjct: 595 CLNPQDEMLIRAAMATGLQGWTVSQLARLNDDETLWEQTVEHIRLAGELWRNRGILPMLR 654 Query: 663 ALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 + I E LLA GER+LTD+LH+ ELLQ A + L EHAL+RWL + +P+ +A Sbjct: 655 QWLFWYQIPERLLADTNGERQLTDVLHLGELLQTAASTLNGEHALLRWLLERCHQPNGDA 714 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA 782 QQ+RL+S++ VQIVTIHKSKGL+Y LV LPFI +R + YH + + LDL Sbjct: 715 DEQQLRLDSERQRVQIVTIHKSKGLQYGLVLLPFICAYRGNDMPRYHTGNGVQ--LDLTG 772 Query: 783 APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL 842 + + + A ERLAEDLRLLYVALTR V+ LG+A L + K D +AL LL Sbjct: 773 SEHAWEKAAEERLAEDLRLLYVALTRGVFVTWLGLADL--KINSKTKAKDDRPAALDYLL 830 Query: 843 QK-GEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQ-PWQVNDVSTAELNAKTLQRLPGDN 900 + + R ++ L + D A + A+ Q P+ V A+ N Sbjct: 831 KNDSDSALTVRFRQWLQQLNNHDRAAEVAEIAFPQTPYHEISVPLPAPQARHFSGQLERN 890 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 WRVTSYS L H Q P L V + + P FPRGA GTFLHSL E Sbjct: 891 WRVTSYSAL-TVSHSTYQP-TPPLPVVVSDEEP--QAPRFDVFSFPRGAHAGTFLHSLLE 946 Query: 961 DLDFT--QPVDPNWVREKLELGGFE-------SQWEPVLTEWITAVLQAPLNETGVSLSQ 1011 DLDF W+ E L+ G + W+PVL +W+T +L + L G+SLSQ Sbjct: 947 DLDFGADDAFCRKWITEHLQ--GVQLSHDWQPEPWQPVLEQWLTQILNSELF-PGLSLSQ 1003 Query: 1012 LSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR 1071 L+ + EMEF LP++ PL A L+ + D LSA PPL F +V+GMLKGFIDLVF Sbjct: 1004 LTPQQCLSEMEFLLPLA-PLSAPALNRCLAAGDALSANAPPLAFNEVQGMLKGFIDLVFE 1062 Query: 1072 HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDY 1131 H+GR+Y++DYKSN+LG++ +AY Q AMA AM HRYD+QYQLYTLALHRYLR R+ DYDY Sbjct: 1063 HQGRFYVVDYKSNYLGDNPAAYQQDAMAQAMLEHRYDVQYQLYTLALHRYLRCRLPDYDY 1122 Query: 1132 EHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 E H GGV YLFLRG++ + G+Y T+P+ IA +D +FAG + Sbjct: 1123 ERHIGGVCYLFLRGMNGD-AGSGVYATKPDKQHIAALDALFAGQS 1166 >UniRef50_Q2BKD8 ATP-dependent exoDNAse beta subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKD8_9GAMM Length = 1179 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/1194 (44%), Positives = 750/1194 (62%), Gaps = 53/1194 (4%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LDPL PL G++LIEASAGTGKT+TI ALYLRLLLGLG +PL +++LVVTFTEA Sbjct: 7 LDPLTFPLVGQQLIEASAGTGKTYTITALYLRLLLGLGQVG--DKPLGPDQILVVTFTEA 64 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 AT ELR RIR I + R + L + +P L +++D AQA + L A RQMDEAA+F Sbjct: 65 ATEELRDRIRQRIVDARNSFLTDQVSDPFLAALKAQVNDIAQAVKLLDQAIRQMDEAAIF 124 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE-T 186 TIHGFCQRML +AFESG LF+ +L +D+ L A D+WR + YP+ +A +VF Sbjct: 125 TIHGFCQRMLKRHAFESGSLFDTELTQDDQSLVRSAVLDYWRNNIYPMQGAVADLVFNHC 184 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 W+ P+ L+ D+ R L G ++ P L + + + ++ KQ W +L +L Sbjct: 185 WQSPEQLIMDL-RGLIGRQIRLE-PDLSRVNLQEAYDEWIETLNNFKQAWLANSDDLQSL 242 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEET--NSYQLPESLEKFSQRFLEDRTKAGGET 304 I++S +++R + +++ KW+ +I +A E L L++F+Q L ++T G Sbjct: 243 IQASDVNKRSYTKASLPKWLAQIDQYAASEQLEPGKTLKGILQRFTQSVLIEKTTKGA-A 301 Query: 305 PRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 P HPLF ID LLA + +R++++T AL E+ +AR K FDD+L+ +AL Sbjct: 302 PEHPLFVQIDDLLASSVPVREILLTSALKEVETRLARTKAEYQLQTFDDLLTGFSAALSV 361 Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRG 424 + +L +A+R +FPVA+IDEFQDTDP QY IF ++ +AL++IGDPKQAIYAFRG Sbjct: 362 DQTGLLVSAVREQFPVALIDEFQDTDPLQYGIFSHLYSDPFNSALVMIGDPKQAIYAFRG 421 Query: 425 ADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE-IPFIPVKSAGK 483 ADIFTY++AR V YTLDTNWRS GMV++VNKLF D AF++ E IPF PVK+AGK Sbjct: 422 ADIFTYIQARRSVSETYTLDTNWRSTSGMVDAVNKLFQFADSAFIYDEDIPFTPVKAAGK 481 Query: 484 NQALRFVFKGETQPAMKMWLMEGES-CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 + A + + A+ +W +E E Y S AQ A++I L G+A + Sbjct: 482 S-AKKLTIQQHEPAALNIWHLESEEPLNKVQYLSAFAQSTASEIDRLLS----GDASI-- 534 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 GD R V SDI+VLVR R EA ++R AL + E P VYLSN+DSVF + EA E+ +L A Sbjct: 535 GD--RSVEGSDIAVLVRDRFEAEEIRRALAVYEHPCVYLSNQDSVFNSQEALELSLILAA 592 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLR 662 V P+ E L++ALAT ++ N ++ LN DE+AW+ VV EF Y++IW K GV+P L Sbjct: 593 VEQPQNERALKAALATEILLQNVQQLDQLNYDENAWEGVVAEFTEYQEIWLKLGVLPCLS 652 Query: 663 ALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 ++ RN++ LL GGERRLT++LH++ELLQ+A +++E L+RW ++ I P + Sbjct: 653 RMLHQRNLSARLLEQMGGERRLTNLLHLAELLQQASSEVEGTSGLIRWFNEQIANPSGAS 712 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA 782 + +RLES+++LV IVTIHKSKGLEYP+V+LPFI NFR Q+ AFYHD AVLDL++ Sbjct: 713 DDKILRLESERNLVTIVTIHKSKGLEYPIVFLPFIANFREQKTAFYHDDEG-TAVLDLSS 771 Query: 783 APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR-L 841 +++ A+ ERLAE+LRLLYVALTRSV+ C LG+A + R G+ K + + SA+G L Sbjct: 772 GEGALEEADKERLAEELRLLYVALTRSVYRCYLGLADI--RLGNSK-KSRLSDSAIGYLL 828 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN--QPWQVNDVSTAELNAKTLQRLPGD 899 LQ G+ D A + L A Q D+ Q V E+ A +++ G Sbjct: 829 LQNGDNLDEA-----LSQLSQVSDAIQICSPPDHGAQKDMFAFVDEPEMEALSVREFSGK 883 Query: 900 ---NWRVTSYSGLQQRGHGIAQDLMPRLD---VDAAGVASVVEEPTLTPHQFPRGASPGT 953 +WRV+SYS L R ++P LD V+ +G V ++ +T FP+GA+ GT Sbjct: 884 IDRSWRVSSYSAL-SRHSAEHLPVLPGLDLEVVEESGEEQVGDD-GMTIFNFPKGANAGT 941 Query: 954 FLHSLFEDLDF-TQPVDPNW-------VREKLELGGFESQWEPVLTEWITAVLQAPLNET 1005 FLHS+FE++DF T +P + E+L L G+E W+PV+ + I VLQ L + Sbjct: 942 FLHSVFEEIDFYTYLHNPECRIEYQAQISEQLILAGYEEAWQPVIDQLIVDVLQTELGDG 1001 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 G SL Q+ +++ VEMEF L ++ L +QL+ LIR++D LSA P+ F ++GMLKGF Sbjct: 1002 GFSLGQVRDKDRLVEMEFMLK-ADHLQVAQLEGLIRRYDALSAQTRPVAFEPLKGMLKGF 1060 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL+FR + RYY+LDYKSN LG + YTQ+A+ AM HRYDLQY LY+LA+HR L R Sbjct: 1061 IDLLFRVDDRYYVLDYKSNHLGNRADCYTQEALERAMAEHRYDLQYLLYSLAVHRLLMQR 1120 Query: 1126 IADYDYEHHFGGVIYLFLRGV-----DKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 + +YDY+ HFGGV YLFLRG+ D + G+++ RP LI MD++FAG Sbjct: 1121 VPNYDYDKHFGGVFYLFLRGMTACGKDSGNTTLGVFSNRPERELIEKMDQLFAG 1174 >UniRef50_A1SUW1 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Psychromonas RepID=A1SUW1_PSYIN Length = 1226 Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/1219 (40%), Positives = 725/1219 (59%), Gaps = 68/1219 (5%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V + L+ L PL G+RLIEASAGTGKT+TIA+L++RLLLG G AA PLTV+++LVVT Sbjct: 15 VVQPLNALTFPLYGQRLIEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVT 74 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FTEAATAELR RIR I ++R+ ++ +DNP + LL+E+ D A + L AE QMDE Sbjct: 75 FTEAATAELRNRIRERIQDVRLDFIQGESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDE 134 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 AA+FTIHGFCQRML NAFESG LFEQ L+ED++ L AC DFWR Y L + +++ Sbjct: 135 AAIFTIHGFCQRMLMQNAFESGSLFEQNLLEDDAQLLQLACNDFWRTFFYGLSTPLTELI 194 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 F W+ P L +++ +L + + P +D +++ + ++ I+T+K W + + Sbjct: 195 FSYWENPGQLQKNLRPFL-SRSDLHFLPKINDFDFKAKYERSISFIETLKINWLNDQSDY 253 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 +I S + +R +++ N W+ ++S WA + S LP+SL KFSQ+ L+++T GE Sbjct: 254 ADIITHSAVSKRSYSKKNIPNWLKEVSQWALTSSASLSLPKSLVKFSQKTLDEKT-PKGE 312 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 P HP+F I+ LLA LS+ + ++ +A ++ + K ++ LGFDD+L+RLD+AL+ Sbjct: 313 IPTHPVFSEIEALLALDLSLENTILVKATHWVQAHLQSNKNKQMLLGFDDLLTRLDAALQ 372 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---------QPETALLLIGD 414 + + + LA IRT +P+A+IDEFQDTDP QYRIF I+ L +IGD Sbjct: 373 NGNEKSLALNIRTAYPIALIDEFQDTDPVQYRIFTTIYQSLEGEDSEPLDKSLGLFMIGD 432 Query: 415 PKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EI 473 PKQAIY+FRGADIFTYMKAR V AHY+LD N+RS P M+++ N F F++ +I Sbjct: 433 PKQAIYSFRGADIFTYMKARQNVSAHYSLDYNYRSTPEMIDASNTFFEFCPAPFIYNDDI 492 Query: 474 PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD--YQSTMAQVCAAQIRDWLQ 531 PF V++ K + + V + + PA G ++ ++ C +I+ L Sbjct: 493 PFSAVQAPDKRRK-KLVVENKDDPAQSALQFIHPVGGENSQGFKDSITHACINEIKKILL 551 Query: 532 AGQRGEALLMNGDDARP-VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 Q+ +A L + R +RA+ I+VLVR+ +EA +R+AL I SVYLS ++SV+ T Sbjct: 552 LAQQDKAYLEDKKGKRSIIRANHIAVLVRTGKEAQLIRNALFNENINSVYLSLKESVYAT 611 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 A+++L +LQA + PE E LR+A+A + + + + W+ + +F YR+ Sbjct: 612 SHAKDLLRILQACLNPENERLLRAAIACKLFCQTPYQVHQILLNTRLWEEKIGQFIEYRR 671 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 WR G++ ML L + I+ LL GER LTD+LH++ELLQ+ + E AL+RW Sbjct: 672 QWRSVGILAMLHKLFHQQAISAYLLKDTQGERLLTDVLHLAELLQKNSVDHDGEFALLRW 731 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 + I + +S S Q+ RLES+K LVQ+ T+HK+KGL+Y +V++PF ++ + YHD Sbjct: 732 FGEQIKQGNSGESEQKQRLESEKDLVQVSTLHKAKGLQYDIVFMPFTGLYQKPQACLYHD 791 Query: 771 RHSFEA-VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 A + DL + LAE E+LAEDLRLLYV LTRSV+ C +G+ ++G +K Sbjct: 792 PDQNNALIFDLQNTKNNAALAEKEQLAEDLRLLYVGLTRSVYRCYIGIGNY--KKGREK- 848 Query: 830 DTDVHQSALGRL-LQKGE---PQDAAGLRTCIEALCD-------------DDIAWQTAQT 872 ++ + +SALG + LQ G+ D L ++ + D D+ +Q Q+ Sbjct: 849 NSPLCKSALGYICLQAGKGLLAGDTEQLNKQLQKMADNSLNISIRPTPLLDETHYQARQS 908 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH--------GIAQDLMPRL 924 +QP Q V K ++R NW ++SYS L R H + +MP Sbjct: 909 --DQPLQAPLVL-----GKQVER----NWWISSYSSL-SRFHTQTNTQVASVTPTVMPID 956 Query: 925 DVDAAGV---ASVVEEPTLTPHQFPRGASPGTFLHSLFE--DLDFTQPVDPN-WVREKLE 978 ++ +++ P TP FPRGA GTFLH LFE +L+ + N + E+L Sbjct: 957 NISNEQTEVSPAILTSPEKTPFSFPRGAKHGTFLHELFELTNLENMETETLNELLFEQLL 1016 Query: 979 LGGFESQ--WEPVLTEWITAVLQAPLNETG-VSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 L + W PVLT WI +L L + L LSA+ K++EM+F++P+ E L A++ Sbjct: 1017 LRHYPDPELWAPVLTAWIEQILGHDLAAGADIKLGDLSAQQKKIEMQFFIPMQE-LQANE 1075 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 ++ L++++DPLSA L+F V+G LKGFIDL F G+YY+LDYKSN LG+ Y Q Sbjct: 1076 VNNLLKKYDPLSARAGELQFRTVQGFLKGFIDLTFEKNGQYYVLDYKSNHLGDCLQDYNQ 1135 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGI 1155 +M A+ HRYD QYQLYTLALHR L+ R+ADYDYE H GGV Y FLRG+ E + G+ Sbjct: 1136 TSMEQALIEHRYDFQYQLYTLALHRLLKSRLADYDYETHIGGVFYTFLRGMQGEQ-EYGV 1194 Query: 1156 YTTRPNAGLIALMDEMFAG 1174 Y +P+ LI +D++F+G Sbjct: 1195 YFVKPSFSLIDGLDKLFSG 1213 >UniRef50_Q8D2T8 RecB protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2T8_WIGBR Length = 1162 Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1171 (34%), Positives = 689/1171 (58%), Gaps = 22/1171 (1%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+P+ P++G LIEASAGTGKT++I YLRLLLGL +FP L+V+E+L+VT+TE Sbjct: 7 LNPISFPIKGTCLIEASAGTGKTYSIIIFYLRLLLGLN-IKSFPHGLSVKEILLVTYTEF 65 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A +L+ RIR I L+ AC+ + +PL++ EI + ++ L+ AE +DEA++F Sbjct: 66 AKNQLKERIRKGIIHLKSACINKDETHPLFK----EIKNVKKSLIKLIYAEHNIDEASIF 121 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFC +ML+ N ES ++ IEDES L Q +FW ++C LP I++++F W Sbjct: 122 TIHGFCHKMLSANLIESKFFLDKNTIEDESYLYNQISKNFWEKYCSKLPILISKIIFSYW 181 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 K LL+D +++GE P I + +++ + + + I+ +K+ W+ + ++ I Sbjct: 182 KDSDFLLKDTLPFIKGEKPTILSSVNKKQSIKNFYYSKIIYINKIKRIWKKLIIKMLLKI 241 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH 307 S+ ++ K + K+I+ I AW+ +T ++ +P ++K + L++ K ++ Sbjct: 242 VSNLMNANK--KEKILKYINIIDAWSNNKTENFDVPIEIKKI-KNLLKNHYKNYKNILQN 298 Query: 308 PLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG 367 F +D+ +++L+ +++ ++RE EK+ + +L FDD++ + L + Sbjct: 299 IFFNKVDESYKFYKKLKELIFQKSIIKMREYKKTEKKNQEKLDFDDLIILFKTELFKFNK 358 Query: 368 EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADI 427 L+ IR +PVA+IDEFQDTD QY+IF +I++ + +L+LIGDPKQAIY FRGADI Sbjct: 359 --LSKIIRNIYPVAIIDEFQDTDLIQYKIFFKIYYKKKMCSLILIGDPKQAIYGFRGADI 416 Query: 428 FTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 FTY+K ++++ Y+L TNWRS+ MVN+VN LFS+ + F+++ I F S KN L Sbjct: 417 FTYIKIKNKIKNIYSLQTNWRSSVRMVNAVNFLFSRIKNPFIYKNINFDKALSIKKNNNL 476 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 F + + Q A++ + + G+ +YQ MA+ A +I + + + + L N + Sbjct: 477 NFFIENKLQSAIEFVMYPKNNIGLHNYQKYMAEQYAIKIYNIINSSDYKKTYLENKYSHK 536 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 V SDI++LVR+R EA ++ A L IP++YLS+ SVF TLEA++++ +L A++ PE Sbjct: 537 NVIISDITILVRNRTEANFMKIACDKLSIPNIYLSDNSSVFHTLEAKDIIQILNAILFPE 596 Query: 608 RENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 EN +R AL T M GL ++I+ LN ++ + ++ EF YR +W K G+M M+ ++ Sbjct: 597 NENIVRCALLTKMFGLTNVEIQKLNYNKKIFKKIILEFILYRDLWDKFGIMQMMNYILDN 656 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 +N + ++I+HI E+L E +++++H L++WL I D + ++ Sbjct: 657 KNYFTMFNKFKKDIKYFSNIIHIVEILHETSKKIKNKHELLKWLYYQITFNDVQNENHKI 716 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV 787 R+ + V+I+TI KSKGL++P+V+LPF+++FR ++ +H + ++ +LDL + ++ Sbjct: 717 RVFDEDKAVKIMTIFKSKGLQFPIVFLPFLSSFRTKKHVLFHSKKKYKLILDLKSTLKNR 776 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 L++ ERL+ED+RL YVA+TR+++HCS+G+ L K + H++++G ++QK + Sbjct: 777 KLSDKERLSEDIRLFYVAITRAIYHCSIGICSLSIGNQTKSVMSHTHRTSIGYIIQKRKK 836 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK--TLQRLPGDN-WRVT 904 D L+ +E + + N ++ + + N K + D ++ Sbjct: 837 SDWNTLKKYLENISFYSKGNISVNLKKNLCKKILKTNFSFFNIKKNIISNKKEDYFFKSI 896 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF 964 S+S +++ + + + P+G G F+H +FE L+F Sbjct: 897 SFSYIKKNNFNKLNYIYEHEKENKEKIYD------FNTSFLPKGKIFGKFIHKIFEKLNF 950 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 T+ +D N ++E L F+ L EWI +++ PLNE +SLS++ +NK E++FY Sbjct: 951 TKNIDKNIIKENLVKYEFDLSLTNDLAEWIKNIIKKPLNEDFLSLSRIKQKNKLTELKFY 1010 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFM-QVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 L I+ + + + LI+++DP+S+ C L+ + + G+L G +DLVF + +YY LDYKS Sbjct: 1011 LSINSKIKEKEFNFLIKKYDPISSKCFCLKNINNINGILTGSVDLVFLWKKKYYFLDYKS 1070 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 NWLGE+SS Y ++ M M HRYD+QYQ+Y++A+HRYL+++I YDY HFGG+ YLF+ Sbjct: 1071 NWLGENSSFYNKKNMTLEMIKHRYDIQYQIYSVAIHRYLKYKIKKYDYNKHFGGIYYLFV 1130 Query: 1144 RGVDK--EHPQQGIYTTRPNAGLIALMDEMF 1172 RG++ + GIY +PN LI +++ F Sbjct: 1131 RGINNLCRKTKNGIYFIKPNYSLINKINKHF 1161 >UniRef50_Q7VRE9 Exonuclease V, beta chain n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VRE9_BLOFL Length = 1208 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1211 (35%), Positives = 702/1211 (57%), Gaps = 50/1211 (4%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + LD L LPL G RLIEA AGTGKT+ + +YLRLLL LG AF +PL+ + +L+VTFT Sbjct: 2 QNLDILYLPLHGIRLIEAPAGTGKTYNLIIIYLRLLLNLGTQTAFSKPLSTKNILIVTFT 61 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 + A L+ RI+ NI + R+ C++ + NP++ +LL +I D + L +AE++++++A Sbjct: 62 KTAVHNLKNRIKENIRQFRLDCIQGYSTNPIFSKLLSQIYDINLSINLLRIAEKEINQSA 121 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQ++L N E MLF+ +IE++ + + C+DFWRR+ Y LP I Q++ Sbjct: 122 IFTIHGFCQKILVENTIELNMLFDLTIIENKLVPYQKICSDFWRRNFYKLPLNIIQLIQT 181 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDET---LASRHAQIVARIDTVKQQWRDAVGE 242 WK P+ LL+DI Y+ + I+ D++ +++ +A I+ ID++K++W + + Sbjct: 182 FWKNPEELLKDIIPYIYNDLTTIQHSKFIDQSHKNISTYYANIIDCIDSIKKEWNTKIQQ 241 Query: 243 LDAL----IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 D + I + R+K+N+ N +WI+ I+ W+ + T+++ +P L++F L Sbjct: 242 HDLIKIIYIHNKPNHRKKYNKKNLDRWIEIINQWSIQPTSNHTIPNELKQFRSSVL-IIN 300 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358 K + LF+ I+QL S + L++ + + + + R ++ FDD++ L Sbjct: 301 KNNQNFQKLFLFDLIEQLYRRIESFQLLILHMVMDDFQHNLYNMHYTRSQITFDDLVKLL 360 Query: 359 DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--HHQPETALLLIGDPK 416 L I ++PV +IDEFQDTD QY+IF ++ H + L+LIGDPK Sbjct: 361 LYNGFKNKNNKLIKNILEQYPVTIIDEFQDTDQNQYKIFHTLYNTHTDQKKCLILIGDPK 420 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI 476 QAIY FRGA+IFTYM+ R +H Y L+ NWRS+PGMVN++N+LF Q + F+F++I FI Sbjct: 421 QAIYGFRGANIFTYMQIRQSLHYKYYLNINWRSSPGMVNAINQLF-QVPNPFVFKDISFI 479 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 P + KN +F+ + Q + WL E + +Y++ MAQ C+ +++ L Sbjct: 480 PSIPSYKNNKHQFLIHNQLQSPLCFWLYSHECITMNNYKTIMAQECSIVLQNLLYNIHNK 539 Query: 537 EALLMNGDDARPV-RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 A L N + + + SDI++LVR+ EA+ +R L IP+ +LS+R ++FET+E+ E Sbjct: 540 TAWLENNICKKKILQTSDIAILVRNHSEASLIRSELLKRNIPTTFLSSRRNIFETIESYE 599 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKR 655 +L L++A++ P+ + T+ +AL T NA D+E ++N+ W+ + +EF Y IW+ Sbjct: 600 LLLLIRAILFPKLD-TICTALTTIFFKFNATDVENIHNNTFRWEQIFKEFSEYYLIWKNN 658 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI 715 ++ M++ ++ I E LL+ + L +ILH+ ELL + Q S+H+L++WL +I Sbjct: 659 NILSMIKKILFRYKIPETLLSNPSEKNSLINILHLGELLNDFSKQCHSKHSLMQWLEYNI 718 Query: 716 LEP---DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRH 772 P + +A ++R D HL++I TIH+SKGLE+P+ +LPFI+ + + F +++ Sbjct: 719 YYPQNQNQSAEHHKLRFNDDHHLIKISTIHQSKGLEFPITYLPFISCY-TNTKRFSNNQK 777 Query: 773 SFEAV--LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG- 829 ++ +L + ++D + ERL+EDLRLLYVA+TRS++HCS+G+AP++ + K Sbjct: 778 ILQSTPYANLLQSSSTLDFFDLERLSEDLRLLYVAITRSIYHCSIGIAPIIYKSRHKNTL 837 Query: 830 -DTDVHQSALGRLLQKGEPQDAAGLRTCIEALC---DDDIAWQTAQTGD-------NQPW 878 TD+H SALG L+Q +P L+ C++ L + +I ++ N Sbjct: 838 HTTDLHHSALGYLIQNKKPNTPQELKQCLQKLSISSNKNITFRIISKISKKSKLYCNCTK 897 Query: 879 QVNDVS-TAELNAKTLQR-----LPGDNWRVTSYSGLQQRGHGIAQD--------LMPRL 924 +N + T L+AK Q+ + WR TSYS L++ I D + Sbjct: 898 TINITNQTKSLHAKKWQKPILWKTYNNIWRYTSYSELKK---NIITDSSSTEYLNIQNIF 954 Query: 925 DVDAAGVASVVEEPT--LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGF 982 D + + + P+ LT H FP+G G F H LF+ L+F + ++ ++ +E Sbjct: 955 DFNFDDYINNKKTPSNLLTAHTFPKGKVCGMFFHDLFKFLNFRKTINTRSLQTHMERYNI 1014 Query: 983 ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 W L +WI ++ P+N ++LS++ N Q E++F L I L +LD L + Sbjct: 1015 NLNWTIPLQKWIYTIINTPINSDYLTLSKIIPENTQTELKFSLCIKNTLTPHKLDKLCKY 1074 Query: 1043 FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 +DPLS P L F V G+L GFIDL+F + +YYLLDYK+NWLG +++ YTQ + M Sbjct: 1075 YDPLSLRAPILNFETVTGILHGFIDLIFYWKNKYYLLDYKTNWLGNNNNFYTQTMIEKNM 1134 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 +RY+LQYQLYT+ALHR+L+H+I Y YE +FGGV YLF+RG++ GIY RP+ Sbjct: 1135 IQYRYELQYQLYTIALHRFLQHKIQSYTYEKNFGGVYYLFIRGMNGLSFNNGIYFCRPSW 1194 Query: 1163 GLIALMDEMFA 1173 I +D + Sbjct: 1195 EFIKTLDYFIS 1205 >UniRef50_Q8K9A9 Exodeoxyribonuclease V beta chain n=5 Tax=Buchnera aphidicola RepID=EX5B_BUCAP Length = 1179 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1184 (34%), Positives = 689/1184 (58%), Gaps = 53/1184 (4%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ ++PL+G LIEASAGTGKT TIA LYLRLLLGL + R L+V+E+LVVTFT A Sbjct: 24 LNIFQIPLKGIHLIEASAGTGKTSTIAFLYLRLLLGLEKNKENIRKLSVKEILVVTFTNA 83 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A EL RI+ +I EL ++C+++ + +P+++ L +I + +A L A+ ++ AA++ Sbjct: 84 AKEELYIRIKKSIKELHLSCIKKKSKDPIFQSFLTKIKNFDEAIHILEDAKININNAAIY 143 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQ +L N S +++IE+ES L QA DFWR Y LP++I ++++E + Sbjct: 144 TIHGFCQDVLENNTLISN----REIIENESFLYLQATQDFWRYFFYNLPKKIIKIIYEEY 199 Query: 188 KGPQALLRDINRYLQGEAPV-IKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 + P+ LLR+I L+ + + K ETL + H +I+ +I+ KQ+W + + + Sbjct: 200 RSPEDLLREIKPILKVNSSINFKKKFDKKETLITFHEKIINKINIFKQKWLNYNLIILKI 259 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I ++++ ++ N KW KI+ WAE ET +Y++P L+ FS+ +E K + Sbjct: 260 INQLKVNKKIYSNFNILKWKKKITEWAESETKNYKMPICLKYFSETSIEKNIK-NYNFKK 318 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 H FE ID++L + S++++++ A+ I + V REK ++ LGF+D+L L ++ E Sbjct: 319 HIFFEEIDKILKKNFSLKNIILFYAIKNIPKFVKREKEKKLLLGFNDLLKILLKNIKKE- 377 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 E L I ++PVA+IDEFQDT+ QQY+IF ++ ++ +TAL L+GDPKQ+IY+FRGAD Sbjct: 378 -ESLREIIIKQYPVALIDEFQDTNIQQYQIFNTLYKNK-KTALFLVGDPKQSIYSFRGAD 435 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 IF+Y+ A+ ++ +Y LDTNWRS+ + ++N LFS+ + F F+ IPF P+ S+ KN Sbjct: 436 IFSYLHAKFKIKNYYYLDTNWRSSKNICKAINYLFSKNKNPFYFKNIPFEPILSSSKNLN 495 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 ++F K + Q A+ + + E + +Y+ +A+ CA +I WL ++GEA++ +G Sbjct: 496 MKFKIKEKNQTAISFFFQKKEEVNIEEYRDWIAKQCANEISYWLTCSKKGEAIISDGSQE 555 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R + DI +LVR+R EA ++++L + I S Y S +SVF+T +A E+L +L++++ P Sbjct: 556 RILTEKDIVILVRNRTEAQIIKESLKKVNILSKYSSPYESVFKTFDALELLSILKSILDP 615 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 N L+ ++ T ++ A N+ ++++ Y W+ G+ ++ ++ Sbjct: 616 TDINLLKKSILTHILNKIAFQKIKENSKTKISHFLIQKLYEYNDKWKTIGIFYTIKTMIL 675 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 N ++R + LHI+ELLQE E++L+RW + ILE ++ + ++ Sbjct: 676 EYQKYANNFEMYKNQQRNINFLHIAELLQEKSQNCYKENSLMRWFEKKILEKNNISENEY 735 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPES 786 ++ ++ +++I+TIHKSKGLEYP+VW+PFI +F V + FYH++ + + D N + E+ Sbjct: 736 IKNFAESKIIRIITIHKSKGLEYPIVWIPFIVDFNVSKSYFYHEKKTLKIFFDNNKSSET 795 Query: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 + ++ ERLAEDLR LYVALTRS++HCS+G++ LV++R K +D+H+S+LG ++Q G+ Sbjct: 796 LKKSDEERLAEDLRFLYVALTRSIYHCSIGISYLVKKRKKNKKSSDIHKSSLGYIIQNGK 855 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW----- 901 + L ++ L N+ + +V +N K+L D + Sbjct: 856 CMNYKELLYELKIL--------------NKKLYI-EVKYQAMNCKSLTIKKDDLYILSQP 900 Query: 902 -----------RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV---EEPTLTPHQFPR 947 ++TS++ ++Q ++ + S ++ T H FP Sbjct: 901 QFLLKEIKLYSQITSFTKIKQENKHFN-------NIQYNNIESYFFKEKDKKKTIHNFPH 953 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGV 1007 G G F+H + + + F + +W L+ F +W L WI +L +N + Sbjct: 954 GNKAGIFIHYILKTIKFNNTFNIDWFYTILKKYEFSEKWAKTLMFWINNILNFKINNLNI 1013 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 +LS L E+EF+LPI L L+ +I+ D +S+ + F V G+LKGFID Sbjct: 1014 TLSSLKKTQYIKELEFFLPIKNTLYCEDLNQIIQSIDLISSISQKIFFNPVIGILKGFID 1073 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 LVF +YY+LDYK N+LG + + Y+ + + + +RYD+QYQLYTLALH+YL+ ++ Sbjct: 1074 LVFIFNKKYYILDYKCNYLGNNDNCYSSKNIKKEIIKNRYDIQYQLYTLALHQYLKKKVK 1133 Query: 1128 DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEM 1171 Y Y+ HFGGV YLFLRG++ + I+ P+ LI + ++ Sbjct: 1134 QYHYKTHFGGVFYLFLRGIN---VKDSIFYILPDYLLIKKLTKL 1174 >UniRef50_A6W0A9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0A9_MARMS Length = 1240 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/1230 (39%), Positives = 717/1230 (58%), Gaps = 73/1230 (5%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V E L+ L PL G+RLIEASAGTGKT+TIA LYLRLL+ G + +PLTV+++LVVT Sbjct: 16 VPEPLNALTFPLFGKRLIEASAGTGKTYTIANLYLRLLVPTGQAGDLDKPLTVDQILVVT 75 Query: 64 FTEAATAELRGRIRSNIHELRIACLR-ETTDNPLYERLLEEIDD-KAQAAQWLLLAERQM 121 FTEAATAEL+ RIR I R A L+ E++D L + L++ D+ +A A + LL AE+QM Sbjct: 76 FTEAATAELKARIRGRIRAARKALLQGESSDVFLADWLVQMSDEQRAGAIEKLLYAEKQM 135 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEAAVFTIHGFCQRML+ NAFES MLF+Q + DE A D WR YP+ A Sbjct: 136 DEAAVFTIHGFCQRMLSQNAFESRMLFQQTIETDELAPLSMAVKDVWRSVFYPMDDTKAA 195 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 ++ W P ALL+D+ YL P K PD + S +Q + V+ W Sbjct: 196 LIQPIWSNPDALLKDL--YLLNNQPDAKIAVPDYD-WESALSQAQETMMAVRAMWLAQSQ 252 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 ++ +E SGI +R F R + +K I ++ WA + ++L +SLEKF R G Sbjct: 253 DIIDALERSGI-KRTFWRKDPSKDIQAMTQWAN--STRFELDKSLEKFDTNEHASRLSKG 309 Query: 302 GETPRHPLFE---AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358 G+ P H F A+ + + ++ +++T+ + +E + R KR L F D+L+ L Sbjct: 310 GDLPAHEFFALVLALRESFPDAGRLKAVLLTQLWQQTQERMKRWKRSTQSLTFTDLLTSL 369 Query: 359 DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH----HQPETALLLIGD 414 D AL + LA IR +P+A+IDEFQDTD QYRIF I+ Q L++IGD Sbjct: 370 DVALAQDEAGKLAERIRHLYPIALIDEFQDTDAVQYRIFSTIYAPAQVDQNALGLIMIGD 429 Query: 415 PKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP 474 PKQAIYAFRGADI+TY+ A+ V + Y+L TN+RS+ M+ SVN LF+ + F IP Sbjct: 430 PKQAIYAFRGADIYTYLAAKKRVDSVYSLATNYRSSAAMIRSVNGLFTTQAEPFRVTGIP 489 Query: 475 FIPVKSAGKNQALRFVFKGETQPAMK-MWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAG 533 F+ V+ G A F +G+TQ A++ ++ E +Y+ TMA+ CAA + + L G Sbjct: 490 FVEVQDRGI--ASGFSRQGQTQAALQFLYQRSDEPVSAKEYRQTMAESCAAHLHELLLEG 547 Query: 534 QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 Q+GEAL+ D + VR D+++LV + +A ++DAL I SVYLS++ SVFET+EA Sbjct: 548 QQGEALI----DGKGVRPKDVALLVTNFSQANALKDALRQRGIASVYLSDKGSVFETVEA 603 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWR 653 +E+L +L A+++ +E+ LRSALATS++ + D++TLN+D+ ++ + F Y ++W Sbjct: 604 RELLIVLTAILSNGQESKLRSALATSLVDWSLEDLDTLNHDDVVYEKWGQAFRDYLELWD 663 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 K+G++PMLR M ++A N+L+ GGERRLTD LH++E LQ+ +L+S+ ++R+L Sbjct: 664 KQGLLPMLREFMQDVSLAANILSHTGGERRLTDFLHLTEKLQQKSLELDSKEGVLRYLRL 723 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF-ITNFRVQE-QAFYHDR 771 I P+ N+ Q++RLE+D LV+IVTIHKSKGLEYP+V+LPF +T +R Q+ A YHD Sbjct: 724 AIQNPNGNSDEQKIRLETDAELVRIVTIHKSKGLEYPIVYLPFALTPYRDQDSSALYHDA 783 Query: 772 HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD- 830 + + ++ +L + E A ++RL YVALTRS C +G + + +G Sbjct: 784 QQ-QLWIAIDPDEAQTELHKEELYAAEIRLAYVALTRSKEACFIGSMEVGKSSNKTRGAV 842 Query: 831 TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG----DNQPWQVNDVSTA 886 +DVH S +G L+ +GE +A L +E LC+ +Q Q ++P ++ A Sbjct: 843 SDVHLSGVGALIGEGESLEAGDLYPSLERLCE---RYQDGQMQLLDLPDEPQRLPRFKMA 899 Query: 887 ELN----------AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD----------- 925 N A+ +W V SYS L + +P LD Sbjct: 900 AFNKVQDELIEPHAREFTGRVERDWWVGSYSSLVVEDKERHDESVPGLDEMTRFVDPLLD 959 Query: 926 ---VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED------------LDFTQPVDP 970 V + + +EP FP+GA PGTFLH E D + Sbjct: 960 NMEVPESPLELAQKEPEKNRFTFPKGAKPGTFLHDTLEGKALHDVSANPSFKDLLKTSHH 1019 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEP 1030 + E GF+ +W+ VL+EW+ ++ L G+SL L + EMEF++P++ Sbjct: 1020 KLMANFYERQGFD-EWQDVLSEWLPDIVNTELM-AGMSLGSLVPSACRKEMEFFIPVT-G 1076 Query: 1031 LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDS 1090 + A QLD + R+ D +S P ++ ++GMLKGFIDL+F ++GRYY+LDYKSN+LG+D Sbjct: 1077 MNALQLDRISREHDGVSKVAPMIQDRPLKGMLKGFIDLLFEYQGRYYVLDYKSNYLGDDF 1136 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEH 1150 + Y + + A+ HRYDLQYQLYTLALHR L+ R+ +YDY H GGV+YLFLRG+ E Sbjct: 1137 ADYEPEKLVHAIAEHRYDLQYQLYTLALHRLLKQRLPNYDYNKHVGGVVYLFLRGMQPEQ 1196 Query: 1151 PQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 Q GI+ +R + +D +F+G +L++A Sbjct: 1197 -QTGIFQSRLTLEHVNALDALFSGDSLDKA 1225 >UniRef50_A3YGC7 Exodeoxyribonuclease V, 135 kDa subunit n=3 Tax=Gammaproteobacteria RepID=A3YGC7_9GAMM Length = 1255 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/1267 (40%), Positives = 718/1267 (56%), Gaps = 129/1267 (10%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + LD L PL G+RLIEASAGTGKT+TIA LYLRLLL + + F R LTV+E+LVV Sbjct: 8 EAVHALDALDFPLFGKRLIEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVV 67 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK--AQAAQWLLLAERQ 120 TFTEAATAEL+ RIR+ I E R A L T +P +LL + + A + LL AE+Q Sbjct: 68 TFTEAATAELKARIRNRIREARKALLLGQTKDPFLSQLLASMTEAEIALGVERLLYAEKQ 127 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTIHGFCQRML+ NAFES MLF+Q++ DE A D WR + YP+ +IA Sbjct: 128 MDEAAIFTIHGFCQRMLSQNAFESRMLFQQEIETDEQAPLAMAIKDVWRSNIYPMTSDIA 187 Query: 181 QVVFETWKGPQALLRD-----------INRYLQGEAPVIKAPPPDDETLASRHAQIVARI 229 +V W P+AL ++ I + GE IK D L S+ + + ++ Sbjct: 188 ALVKPIWPTPEALQKELSLLQNQPDAIIQDAISGE---IKTEAFDLSALMSKAQESIKKV 244 Query: 230 DTVKQQWRD-AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 +V W + A LDAL +SGI + F QA D I WA+ +T S LP L+K Sbjct: 245 KSV---WLEQAANILDALT-NSGI-KGTFWGKRQAGIPDIILDWAQSDTIS--LPPELKK 297 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVARE---KRR 345 F+ R + K G P H FE + L+ S+ + + ++T R K++ Sbjct: 298 FNAREHSHQLKKNGAQPNHSFFELVANLIDSYPSVEKIKAPLMASLWQQTQVRLLNWKQQ 357 Query: 346 RGELGFDDMLSRLDSALRSESGE-----VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 +L F D+L+ LD AL ++ + LA IR +P+AMIDEFQDTDP QYRIF +I Sbjct: 358 TQKLTFTDLLTNLDQALAIQAQDETADNALAKRIRQLYPLAMIDEFQDTDPVQYRIFSQI 417 Query: 401 WHHQPET------ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMV 454 + QP + L++IGDPKQAIYAFRGADI+TY+ A+ EV A Y+L TN+RS+ M+ Sbjct: 418 Y--QPASQANNRLGLIMIGDPKQAIYAFRGADIYTYLAAKKEVDAIYSLATNYRSSAAMI 475 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME-GES----C 509 SVN LFS + F+ IPF+ V+ + +F KG+ Q AM+ + E G S Sbjct: 476 QSVNALFSTQGNPFLVEGIPFVKVED--RQTQGQFYRKGKLQAAMQFMVAEDGFSDDAVL 533 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 YQ MAQ+ A I L Q GEAL+ + PVR+ DI+VLV ++A ++ Sbjct: 534 SSAQYQIQMAQLSAEHICQTLIQAQEGEALI----SSNPVRSGDIAVLVSGYRQAQLMKA 589 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL+ + SVYLS+R SVF + EA+E+L +L A+++ +E+ +RSALAT ++G +++ Sbjct: 590 ALSARGVASVYLSDRGSVFASNEARELLLILNAILSQGKESAIRSALATHLLGWQVDELD 649 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 TLN D+ ++ VE F Y IW K GV+PM+RAL+ A ++A LLA GERRLTD+LH Sbjct: 650 TLNQDDVLYEDWVERFKTYFDIWHKDGVLPMIRALIQALSLAPKLLAGMQGERRLTDLLH 709 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 + E LQ+ + ES+ LVR+L+ I P+ ++ Q++RLESD LV+I+TIHKSKGLEY Sbjct: 710 LGEKLQQKAKEFESKEGLVRYLALAIQTPNGDSDEQKIRLESDDELVRIITIHKSKGLEY 769 Query: 750 PLVWLPF-ITNFRVQ-EQAFYHDRHSFEAVLDLNAAP----ESVDLAEAERLAEDLRLLY 803 PLV+LPF T FR+ + A YHD LN AP + ++ E E A ++RL Y Sbjct: 770 PLVYLPFAFTPFRINGKYALYHDDTH-----QLNYAPVPDEDQLNQHEKELYAGEVRLAY 824 Query: 804 VALTRSVWHCSLGVAPLVR-RRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC- 861 VALTR+ C +G A + + K+ + ++H S +G LL +G+ L + ++ Sbjct: 825 VALTRAREACFIGCAQVGKAATKTKEAELNLHLSGVGSLLCEGKAVALGELESKLKGFLQ 884 Query: 862 --DDDIAWQTAQTGDNQPWQVNDVSTA---ELNAKTLQRLPGD---NWRVTSYSGL---- 909 D++ T + +N S A + N Q G +W V SYS L Sbjct: 885 AYDNEQMALTLLASEQSLLTLNAFSVADEDDENEVKAQHFSGHIERDWWVGSYSSLVVEQ 944 Query: 910 ------QQRGHGIAQDLMPRLDVDAAGV-------ASVVEEPTLTP--------HQFPRG 948 Q++ H P LD ++ V AS ++E LT FP+G Sbjct: 945 AELASEQEKEHS-----EPGLD-ESVTVSSEILEQASALDEAVLTDLDNEEPSCFTFPKG 998 Query: 949 ASPGTFLHSLFE------DLD---FTQPVDPNWVREKLEL---GGFESQWEPVLTEWITA 996 A PGTFLH L E +LD F + + + E G+E +W+ VL W+ Sbjct: 999 AKPGTFLHDLLEGNALLGELDKVSFADLLKTQYQAKMTEYFINQGYE-EWQTVLFAWLED 1057 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 +L+ PL G++L L++ EMEF+LP++ A QLD + RQ+D +S P ++ Sbjct: 1058 ILKTPLY-PGLNLLGLTSDKCFKEMEFFLPVA-GFNARQLDQIARQYDAVSLKAPAIQER 1115 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 ++GMLKGFIDL+F HEG+Y++LDYKSN +G Y MA A+ HRYDLQYQLYTL Sbjct: 1116 PLKGMLKGFIDLLFEHEGKYFVLDYKSNHIGMSYDDYQAHHMAEAIAEHRYDLQYQLYTL 1175 Query: 1117 ALHRYLRHRIADYDYEHHFGGVIYLFLRGV------DKEHPQQ-----GIYTTRPNAGLI 1165 ALHR L+ R+ +YDY+ H GGV YLFLRG+ D+ Q+ G++ TR + + Sbjct: 1176 ALHRLLKQRLPNYDYDEHVGGVCYLFLRGMRPSKVGDESSNQKLMNETGVFKTRLSKEHV 1235 Query: 1166 ALMDEMF 1172 +D+MF Sbjct: 1236 QALDDMF 1242 >UniRef50_D2BZV4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Dickeya dadantii Ech586 RepID=D2BZV4_DICD5 Length = 1230 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1253 (40%), Positives = 700/1253 (55%), Gaps = 108/1253 (8%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S + LD LR PL G RLIEASAGTGKTFTIA LY+RL+LG GG AF RPL ++LV Sbjct: 4 SALPSALDVLRFPLCGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEHAFSRPLNPPDILV 63 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTD-------NPLYERLLEEIDDKAQAAQW- 113 VTFT+AAT ELR RIR+ + + A + D + + LL E+ + QW Sbjct: 64 VTFTDAATRELRDRIRARLAQ--AAAYFQPNDKGGTAGEDDEVDPLLRELRADYPSEQWP 121 Query: 114 -----LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFW 168 L LA MDEAAV TIH +C RML +AF+SG LF Q L D+S L + D+W Sbjct: 122 DCARKLQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSELLLEVVRDYW 181 Query: 169 RRHCYPLPREIAQVVFETWKGPQALLRDINRYLQ--GEAPVIKAPPPDDETLASRHAQIV 226 R +PL + ++W P+ R + L E + P T+ + + + Sbjct: 182 RTFFFPLDARDVLELRDSWAAPEDFYRSVTPLLDYADEIGIDDLPAQIFSTVRAEKTRQL 241 Query: 227 ARIDTVKQQWRDAVGEL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES 285 A + QW D + +L +A + + D RK W+DK+ WA + + + Sbjct: 242 AALKAPWTQWCDELRDLLNAAVAAKKADGRKLQARYFDPWLDKLQHWASSDETTLDIGTG 301 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLFEAIDQL------LAEPLSIRDLVITRALAEIRETV 339 + + + L + K E P HP A++ L L EP R ++ A I + Sbjct: 302 WTRLTPQGLRECWKIPDEAPSHPALRAMETLAQQLSDLPEP---RSQLLRHACRWIHQRF 358 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF-- 397 E+ R ++GF D+L+RLD ALR ++GE LA IR +FPVAMIDEFQDTDP QYRIF Sbjct: 359 RSEQESRAQMGFQDLLTRLDGALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDT 418 Query: 398 -RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVN 455 R+ + P+ L+LIGDPKQAIYAFRGADI+TY++AR + HYTL TN+RS MV+ Sbjct: 419 LYRVATNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVD 478 Query: 456 SVNKLFSQTDD------AFMFRE------IPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 +VN++F Q ++ AF+FR+ +PF+PV++ G++ +V +G A+ W Sbjct: 479 AVNQVFMQAENRANGAGAFLFRQPDGDNPVPFLPVQANGRDDI--WVQEGTPAAALTCWT 536 Query: 504 ME-GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSR 561 +E E +Y+ MA CA ++ LQ G++G+A ++ D RPV+ D++VLV + Sbjct: 537 LETDEPLSSSEYRQRMAAGCAREMVRLLQLGEQGQAGFVSSDQRWRPVKPGDMAVLVNTG 596 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 +EA VR L+ + SVYLS+R+SVF++ A E+ L A PE + LR+ALAT ++ Sbjct: 597 REAMAVRAQLSARGVRSVYLSDRESVFDSPLAGELHCWLSACADPENDRLLRAALATPLL 656 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 GL+ ++ LN+DE W+ V +F Y+Q WR++GV+PMLR L+ ++ LLA A Sbjct: 657 GLSWQALDRLNHDEQEWERRVMQFVRYQQCWRQQGVLPMLRRLLWEFDVPRRLLA-ADNA 715 Query: 682 RRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 R LTD+LH+SELLQ+A L+ EHAL+R+L++ + + S ++RLESD LV++VT+ Sbjct: 716 RALTDVLHLSELLQQASVHLDGEHALIRYLAEQCQADNPGSDSLKVRLESDADLVKVVTV 775 Query: 742 HKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAE 797 HKSKGLEYPLV+LPF FR +HD + L+L A+ E+V A+ ERL E Sbjct: 776 HKSKGLEYPLVFLPFACAFRTVSHRDVPLKFHDDDG-QPRLELIASDEAVARADHERLGE 834 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI 857 DLR YVALTR+ + LGVAPL ++ +SA G LL GEP +A L +C+ Sbjct: 835 DLRKFYVALTRARYALWLGVAPL----------KELEKSAPGYLLGAGEPVEAGQLASCL 884 Query: 858 EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 D+ ++ + A L + WR+TSYSGLQ G Sbjct: 885 SLWIGPHSQIAPLPESDDAVYRAARETPALGQEPPLPDIRRHRWRITSYSGLQLAPEGQY 944 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTP----------------HQFPRGASPGTFLHSL--- 958 Q+ DAA V S +E P + FPRGA PG+FLH L Sbjct: 945 QERRESAAHDAAEVQSARQETFSEPQETAERLPPLPVGYDMYSFPRGAVPGSFLHGLLEW 1004 Query: 959 -----FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL----NETG-VS 1008 F L +P + V + G+ + W P+LT+W+ A L PL + G VS Sbjct: 1005 AGKEGFAALAADRPRVEDQVARRCNRQGW-TPWIPMLTDWLMAQLNQPLALPASPAGTVS 1063 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDT--LIRQFDPLS-AGCPPLEFMQ--VRGMLK 1063 L+ L+ QVEMEF+ ++ Q+DT L +Q + AG P + M+ + GMLK Sbjct: 1064 LAGLT--QYQVEMEFWFALN------QVDTQRLDQQVSAATLAGAPRVPLMRDALNGMLK 1115 Query: 1064 GFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 GFIDLVF H+GRYY+LDYKSNWLG D++ Y MA AM HRYDLQ LY ALHR LR Sbjct: 1116 GFIDLVFEHQGRYYVLDYKSNWLGADAADYDLAHMARAMLDHRYDLQLALYLFALHRLLR 1175 Query: 1124 HRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 R+ DYDY+ H GG +YLFLRG + P G+Y RP+ LI +D +F+G T Sbjct: 1176 SRLPDYDYDRHVGGALYLFLRG--SQAPGGGVYAERPDRTLIDALDRLFSGDT 1226 >UniRef50_A8FUM4 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gammaproteobacteria RepID=A8FUM4_SHESH Length = 1251 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/1240 (40%), Positives = 702/1240 (56%), Gaps = 115/1240 (9%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 ++ LD L LP G RLIEASAGTGKTFTIA LY+RLLLG +PL+ E++LVVTF Sbjct: 29 SKPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLG----HEIEKPLSCEQILVVTF 84 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQMD 122 T AAT ELR RIR I + TD+ L E L L ++ A + L LA + +D Sbjct: 85 TNAATGELRDRIRRKIQLAYRRFIGLETDDDLIESLYRLTPESERHLALKRLDLALKSLD 144 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EA++FTIHGFCQR+L AFES +LFE + D+S + A DFWR CYPLP +A++ Sbjct: 145 EASIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWREQCYPLPEYLAEI 204 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET-LASRHAQIVARIDTVKQQWRDAVG 241 + + + P AL + + R L G + P P + T L Q ++R+ + + RDA+ Sbjct: 205 IQKKFADPDALSKQL-RPLLGASQASAQPVPQEFTKLQQTLTQSLSRLKLIWPRERDAIE 263 Query: 242 ELDALIESSGIDRRKFNRSNQAK-----WIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 L + SG+ +F + A +D + W + +NS + +E S E Sbjct: 264 TLLHALPLSGV---RFGKKADAYPKLAIMLDAMDNWCKF-SNSLPPMKVMESLS--LSEL 317 Query: 297 RTKAGGETP---RHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRETVAREKRRRGELG 350 + GGE P + P+ + I++L A I+D + + A I A++K R L Sbjct: 318 KLNKGGEVPTPEQAPVLDHIERLCA---LIKDFIPSFLFCARNGISARFAQQKSERNLLT 374 Query: 351 FDDMLSRLDSALRSESGEV------LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 DD+L L+ ALR EV LA I RFPVA+IDEFQDTDP Q+ IF RI+ Q Sbjct: 375 PDDLLITLEQALRPNQEEVSGQAISLANTIAKRFPVALIDEFQDTDPLQFAIFNRIYQ-Q 433 Query: 405 PET------------------------ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 P +LL+IGDPKQAIYAFRGADI TY++AR + H Sbjct: 434 PSVDAMGSDDSLIAIDEATAGTSSKNLSLLMIGDPKQAIYAFRGADIHTYIQAREQTSEH 493 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 Y LDTN+RS+ M+ +VN LF DDAF+ + IPF V + V K T A+K Sbjct: 494 YNLDTNYRSSRNMILAVNALFENRDDAFISQAIPFESVLPSPFADNKVLVEKSTTTSALK 553 Query: 501 MWLMEGESCGVGDYQST----MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 + L+ E G ++T +A+ A++I L Q GE + +P++A DI+V Sbjct: 554 IKLL-SEDPEKGLNKTTARKHLAEDAASEIARLLTESQDGECTI----SEKPLKAKDIAV 608 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 LVR R EAA ++++L+ +I +V+LS RDSVF TLEA+EM +L A+ TP+ E LRSAL Sbjct: 609 LVRDRNEAAVIKESLSNRQIGAVFLS-RDSVFNTLEAREMALVLHALATPKDERALRSAL 667 Query: 617 ATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 ATS++G NAL I N DE ++E+FDG W +RGVMP L L + + E LL Sbjct: 668 ATSLLGYNALAIHGFNQDEMVRQTLLEQFDGLHHNWLRRGVMPALLNLANETKLIERLLQ 727 Query: 677 TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLV 736 + GERRLTD H++ELLQ+ T+L+ ALV W Q ++E +N +Q +RLES+++LV Sbjct: 728 SEDGERRLTDFRHLAELLQQKATELDGISALVNWYEQALIENHANEEAQ-LRLESEQNLV 786 Query: 737 QIVTIHKSKGLEYPLVWLPFIT----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA 792 QIVTIHKSKGLEYP+ ++PF++ N R YH+ + V D+ + E + + Sbjct: 787 QIVTIHKSKGLEYPVCFIPFVSLARDNRRKPAPMLYHENNKL--VWDIEQSDEGWERHKR 844 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ---- 848 E LAEDLRLLYVA+TR V+ C L +A R + +H++ +G LL E Sbjct: 845 ENLAEDLRLLYVAMTRPVYQCYLYIANHCRFTKKAGITSQLHETGIGYLLGIEEKACEFS 904 Query: 849 --DAAGLRTCIEAL--CD--DDIAWQTAQT-GDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 + + R EA+ C+ DD++ Q + D+Q L K L+R W Sbjct: 905 LIETSAKRLMSEAISVCEMADDVSSQVLEKMSDDQEL---------LAPKVLKRRLYTPW 955 Query: 902 RVTSYSGL-QQRGHGIAQDLMPRLDVDAAGVASVVEE---PTLTPHQFPRGASPGTFLHS 957 RV SYSGL + H + ++P D +A +++ P + F RGA+ G+F+H Sbjct: 956 RVGSYSGLVKDLPH---ERVLPGADDEAFPELEEIKDELDPLPSRFTFERGANAGSFMHL 1012 Query: 958 LFEDLDFTQPVDPNWVREKLELG----GFESQWEPVLTEWITAVLQAPLNETG-VSLSQL 1012 + E +DFTQ N + E+L + G + W VLT W +L AP+ + G + L QL Sbjct: 1013 VLELIDFTQA--ENGLTEQLPVAMERYGIDESWLDVLTHWYLDLLDAPIVQDGSLKLGQL 1070 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + K VEMEFYLPI+ L A +L+ L++++ SAG L F ++GMLKGFIDL F H Sbjct: 1071 TNNQKLVEMEFYLPIA-ALKADKLNALLQEYG-YSAG---LNFESLKGMLKGFIDLTFEH 1125 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +G++Y+ DYKSN LG+D + Y +M A+++HRYDLQY +YTLALHRYL R+ DYDY+ Sbjct: 1126 QGQFYIADYKSNHLGDDFTHYGPDSMRGAIRSHRYDLQYIIYTLALHRYLSLRMPDYDYD 1185 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 H GG YLFLRG+ P G++ +P GLI +D +F Sbjct: 1186 RHIGGSYYLFLRGMSVGAPMSGVFYDKPAKGLIESLDALF 1225 >UniRef50_Q1QYD3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYD3_CHRSD Length = 1269 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/1234 (41%), Positives = 678/1234 (54%), Gaps = 92/1234 (7%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLG-LGGSAA--FPRPLTVEELLVVTFTEAAT 69 LPL G LIEASAGTGKTFT+AALY+RL+LG L G A +PRPL E+LVVTFTEAAT Sbjct: 20 LPLAGHHLIEASAGTGKTFTLAALYVRLVLGPLPGREACDYPRPLLPPEILVVTFTEAAT 79 Query: 70 AELRGRIRSNIHELRIACLR--ETTDNPLYERLLEEIDDKAQ-----AAQWLLLAERQMD 122 AELRGRIR+ + E R L E + + LL + + Q AA+ L A R MD Sbjct: 80 AELRGRIRARLKEARDWLLAPPEARHDDVLGALLTPLVEAGQTAVASAAKRLDQAARLMD 139 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA+FTIHGFCQRML +AF++G F +L++D S L + D+WR H YPL + Sbjct: 140 EAAIFTIHGFCQRMLTRHAFDAGARFGAELLQDGSTLLTRVVEDYWRCHFYPLAAHWQRE 199 Query: 183 VFETWKGPQALLRDINRYLQGEAPV--------IKAPPPDDETLASRHAQIVARI---DT 231 + W+GP+AL + + L+ P ++AP L + AR D+ Sbjct: 200 IRRRWEGPEALSQALQPLLKDARPQPLWWDGERVEAPASLTTLLGDAERALAARQALEDS 259 Query: 232 VKQQW-RDAV-GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF 289 ++Q W R+A+ G L+ ++R + + W +S +F Sbjct: 260 LRQAWDREAIAGCLNEAFSRGALNRNSYKPDELDTRLAAFEQWLATFEADDGTTDSQGRF 319 Query: 290 --SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR----EK 343 SQ LE TK G + P HP F +D+L AE + D++ R LA R+TVA EK Sbjct: 320 WLSQAKLEKATKKGHDVPTHPFFARLDEL-AETATPFDVLAPRLLAHARDTVAAMFAAEK 378 Query: 344 RRRGELGFDDMLSRLDSALRSESGE----VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 RR+G F D+L LD+AL E+ LA IR PVA+IDEFQDTDP QYRIF R Sbjct: 379 RRQGLWEFGDLLQDLDAALDPEAAPEAAWRLAGRIRQALPVALIDEFQDTDPLQYRIFSR 438 Query: 400 IWHHQPE-----TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMV 454 I + PE T LL+IGDPKQAIYAFRGADI TY+ AR E + +TL N+RS+ MV Sbjct: 439 I-YRAPEADADTTTLLMIGDPKQAIYAFRGADIETYLAARRETPSRFTLTRNFRSSVAMV 497 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV-FKGETQPAMKMWLMEGESCGVGD 513 +VN+LF++ F EIPF+ V A K Q R G+ A+ W E D Sbjct: 498 EAVNRLFARHPTPFGSDEIPFVEV--AAKGQKARLCNADGQEVAALGAWWPGDERHAKAD 555 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 YQ++MA A+++ L+ G + R VR +DI++LVR EA VR AL Sbjct: 556 YQASMASAARAEVQRALEGGWH---FVDEKGGQRDVRPADIAILVRKGSEALAVRRALAE 612 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 I SVYLS R SVF+T A E+L L +AV P ++ L++ALAT ++ N +ETL Sbjct: 613 GGIRSVYLSERASVFDTALAFELLQLFEAVAQPRQDARLKAALATRLLNDNPAALETLLA 672 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 DE AW+ VE F Y + W++RGV+PMLRA+M +AE + A GER LTD+LH+ EL Sbjct: 673 DELAWEREVERFADYHRQWQRRGVLPMLRAVMRDFRVAERMGARDDGERALTDLLHLGEL 732 Query: 694 LQEAGTQLESEHALVRWLSQHILEP----DSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 Q +L+ EHAL+RW + ++E D+ A SQ RLESD+ LV++VTIHK+KGLEY Sbjct: 733 AQTVSARLDGEHALLRWWHRALVEGTRQLDAEAVSQ--RLESDEDLVKVVTIHKAKGLEY 790 Query: 750 PLVWLPFITNFRVQEQ-------AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 P+V LPF+ ++R E + RH L A E + AE RL ED+RLL Sbjct: 791 PIVLLPFVCDYRPAEPERGTGLLEWRDPRHG--RALVHGADDEQLAAAERARLDEDVRLL 848 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVALTR+ C LGVA L R RG +H++ALGRLL A +R + A Sbjct: 849 YVALTRAAHACRLGVAHLGRGRGTSGC---LHETALGRLLGCEADDQAHDVRERLAAA-- 903 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH-------- 914 ++ + +V A +A+ D+W + SYS L Sbjct: 904 --LSVEACPAPPGHRLRVRHALPAVASARRFNGGIDDDWWIASYSALIVDARLAPAGEEA 961 Query: 915 GIAQDLMPRLDVDAAGVASVVEEPTL-TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW- 972 + D LDV+ + V P + T FPRG PGTFLH L E +D + +P + Sbjct: 962 SMTWDAPATLDVEVSREQDPVPRPAVRTLRDFPRGPRPGTFLHGLLEAVDLDRLREPAYR 1021 Query: 973 ------VREKLELGGFESQWEPVLTEWITAVLQAPL---NETGVSLSQLSARNKQVEMEF 1023 V +L LGGFE +W P+L +W+ L P T + L L+A + E+EF Sbjct: 1022 DELQRLVSTRLHLGGFEPEWAPLLLDWLCTALPTPFPGHAGTEIRLDGLAA--WRPELEF 1079 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYK 1082 +LP + A LD L+ F+PL P L ++ GMLKGFIDLVF E GR+Y+LD+K Sbjct: 1080 WLPAHQAWSAP-LDALVSAFEPLPEPRPRLAPRKLNGMLKGFIDLVFEAEDGRWYVLDWK 1138 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 SN LG+ + Y +A+A AM HRYDLQY LY LALHR L R+ DYDY+ H GG YLF Sbjct: 1139 SNHLGDAPADYRPEALAEAMVEHRYDLQYVLYVLALHRLLTARLDDYDYDTHMGGACYLF 1198 Query: 1143 LRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 LRGVD P QG++ RP LI +D G T Sbjct: 1199 LRGVDGT-PGQGVFQRRPERRLIEALDAWLEGDT 1231 >UniRef50_B4X4Z1 Exodeoxyribonuclease V, beta subunit n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4Z1_9GAMM Length = 1198 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/1210 (40%), Positives = 683/1210 (56%), Gaps = 71/1210 (5%) Query: 10 PLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69 P+ PL G RLIEASAGTGKTFT+AALYLRL+LG G F RPL E+LVVTFTEAAT Sbjct: 8 PITFPLHGTRLIEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILVVTFTEAAT 67 Query: 70 AELRGRIRSNIHEL-RI-ACLRETTDNPLYERLLEEI---DDKAQAAQWLLLAERQMDEA 124 ELR RIR + + RI A D+P+ LL + DD+A+ AQ L A + MDEA Sbjct: 68 EELRERIRDRLADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEAAAQWMDEA 127 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV- 183 A++TIHGFC RML +AF+SG LF +L ED S + A D+WR P A + Sbjct: 128 AIYTIHGFCNRMLKQHAFDSGSLFSLELQEDASDEQQMAARDYWRTIISKFPVSAANALQ 187 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRH--AQIVARIDTVKQQWRDAVG 241 + P ALL + R L G +K P++ + H Q + D +Q + Sbjct: 188 SDNLGNPDALL-EACRPLLG----LKEADPEELPQSVTHWLTQTGPQADKDQQARQQLAD 242 Query: 242 ELDALIE-------SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 EL +E + ++ + ++ + + +A E + + ++L KFS + Sbjct: 243 ELPEFLEWVRAARDNKWLNGNSYRTTSLPGMLQTLQRYANGERLNGKAYDTLAKFSNEGM 302 Query: 295 EDRTKAGGET-PRHPLFEAIDQLL---AEPLSIRDLVITRALAEIRETVAREKRRRGELG 350 TKAG E P + +D ++ A R ++ A A I V + +R+ +G Sbjct: 303 R-LTKAGQEQRPDFAFCQQLDAVMDGRANTQLPRTDLLAHAAAWIDRRVDQVRRQTATMG 361 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 FDDMLSRL AL+ +GE LA IR +FPVA+IDEFQDTDP QY IF ++ Q T Sbjct: 362 FDDMLSRLHDALKGGNGERLAQVIRDQFPVALIDEFQDTDPTQYGIFCALYEGQEGTGWF 421 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNKLFSQTDDAF- 468 +IGDPKQAIYAFRGAD+FTY+KAR HYTLD N+RSA MV++VN LFS + + F Sbjct: 422 MIGDPKQAIYAFRGADVFTYLKARRATEGNHYTLDKNFRSADAMVHAVNHLFSYSQNTFG 481 Query: 469 ----MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES-CGVGDYQSTMAQVCA 523 M IPF V++ G+ L + + + +W+ E E G Y+ A CA Sbjct: 482 DVFMMDNAIPFEAVQANGRKDVL--LVDNNEKSGITLWVDEQEKPVSAGQYRDEQAARCA 539 Query: 524 AQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSN 583 ++I L +G D RP+ +DI++LVR R EA +RDAL ++ SVYLS+ Sbjct: 540 SEIAHLLNGAVKGVTGFQKTDSFRPLHPNDIAILVRDRTEAKAIRDALMERQVRSVYLSD 599 Query: 584 RDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVE 643 +DSVF EA ++L +L A TPE + +RSALA +++ L +++ LN DE W+ VE Sbjct: 600 QDSVFAQPEAHDLLLILHACATPESDTRVRSALACAVLDLAYAELDALNQDEVRWEETVE 659 Query: 644 EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLES 703 +F GYRQ W+ +GV+PMLR+L+ ++ L + GER LT++LH++ELLQ+A TQL+ Sbjct: 660 QFHGYRQQWQTQGVLPMLRSLLMDFHVPARLSQSLDGERALTNLLHLAELLQQAATQLDG 719 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 E +L+R+L + E ++ +RLESD V+++TIHKSKGLEYPLV+LPFI +FR Sbjct: 720 EQSLIRYLEDTVEEGRGSSKESILRLESDDDRVKVITIHKSKGLEYPLVYLPFICSFRPA 779 Query: 764 EQAF----YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 ++ YH+ L+ + E+ A+ ERLAED+RLLYVALTR+ C+LG+AP Sbjct: 780 DKNKPPLRYHENDHLNVSLEPDETVENK--ADHERLAEDMRLLYVALTRACHTCTLGIAP 837 Query: 820 LVRRRGDKKGDTDVHQSALGRLL-QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 ++ RG + + +SA+GRLL G D GLR + + D +A A + + + Sbjct: 838 YIKGRGKQ---NQLEKSAIGRLLFGNGVAND--GLRAALTPVAHDAVAIINAPDSNPECY 892 Query: 879 QVNDVS---TAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV 935 Q + L QR P W + SYS L+Q +A PR D A V Sbjct: 893 QPKAQARPLRTPLIPVARQRQP---WWIASYSALKQVQETLAP-ADPRGDQLAEQQDDTV 948 Query: 936 ---EEPTL-TPHQFPRGASPGTFLHSLFE---DLDFTQPV-DP----NWVREKLELGGFE 983 EP T H FPRGA+PGT LH + E + FTQ + DP V EKL+ G++ Sbjct: 949 IDDAEPLPDTIHAFPRGAAPGTLLHDVLEQAANQSFTQTLADPAEFETSVEEKLQARGWQ 1008 Query: 984 SQWEPVLTEWITAVLQA-PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 E + W AV + PL ++L+ L E+EF P + +A ++DTLIRQ Sbjct: 1009 DFMEVIRHWWKQAVTTSLPLENDRIALNTL--HTYVPELEFLFPAHQVKVA-EMDTLIRQ 1065 Query: 1043 FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 P LE + GMLKGFIDLVF H+G+YY+LDYKSNWLG D SAYT AM A+ Sbjct: 1066 HIHPQHPRPRLEADTLNGMLKGFIDLVFEHDGKYYVLDYKSNWLGVDDSAYTLDAMTDAV 1125 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 RY++QY LY LALHR L+ R+ DYD + H GG +Y+FLRG+ + P G RP Sbjct: 1126 LEKRYEVQYVLYLLALHRLLKSRLPDYDPDQHLGGAVYVFLRGL--QGPAAGTVFDRPAT 1183 Query: 1163 GLIALMDEMF 1172 GLI +D MF Sbjct: 1184 GLIEALDVMF 1193 >UniRef50_B0TRK3 Exodeoxyribonuclease V, beta subunit n=4 Tax=Shewanella RepID=B0TRK3_SHEHH Length = 1240 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/1223 (40%), Positives = 681/1223 (55%), Gaps = 85/1223 (6%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V E LD L LP G RLIEASAGTGKTFTIA LY+RLLLG G PLT E++LVVT Sbjct: 22 VTEPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGHG----IESPLTCEQILVVT 77 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK--AQAAQWLLLAERQM 121 FT AAT ELR RIR I + D+ L L D+ A A + L LA + + Sbjct: 78 FTNAATGELRDRIRKKIQLAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALKSL 137 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEAA+FTIHGFCQR+L AFES +LFE + D+S + A DFWR CYPL +A Sbjct: 138 DEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWREKCYPLNGSLAD 197 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 V+ + P AL R + R L G + + AP P E A + + K W Sbjct: 198 VIQAKFSEPDALSRQL-RPLLGASNAVAAPTP--EAFDKLEANLTQSLSRFKLIWPTERE 254 Query: 242 ELDALIESSGIDRRKFNRSNQ-----AKWIDKISAWAEEETNSYQLP--ESLEKFSQRFL 294 + + ++ + ++ +F + AK +D I W T LP ++LE S L Sbjct: 255 QTETMLHALPLNGARFGKKADGYPKLAKMLDDIDNWV---TFGQGLPPAKALEALSLNSL 311 Query: 295 EDRTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 + GGE P + P+ +++L ++ + A I + A++K R L Sbjct: 312 --KLNKGGEIPSAEQAPMLAHMERLTQLTSNLIPSFLYCARDGIAKRFAKQKLERNLLTP 369 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH--------- 402 DD+L L AL + + LA++I RFPVA+IDEFQDTDP Q+ IF I+ Sbjct: 370 DDLLLTLAGALSASTDNSLASSISQRFPVALIDEFQDTDPLQFEIFNTIYQSTASDSSPA 429 Query: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 Q + +LL+IGDPKQAIYAFRGADI TY++AR + HY LDTN+RS MV++VN +FS Sbjct: 430 QQDKLSLLMIGDPKQAIYAFRGADIHTYIQAREQTAKHYNLDTNYRSNRQMVDAVNGIFS 489 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC 522 D F+ + IPF VK++ + E + A+++ ++ ES G ++T Q+ Sbjct: 490 HRADPFISQSIPFEAVKASSFADKKSLKEQVEDKSALRLRVLSEES-EKGLNKTTARQLL 548 Query: 523 AAQIRD--WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A + + L + L GD +P++A DI+VLVR R EA ++ AL+L +I +V+ Sbjct: 549 ADDVANEIALLLTDAQQNLCAIGD--KPLKAKDIAVLVRDRHEANVIKSALSLRQIGAVF 606 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 LS RDSVF TLEA+E+ +L A+ P+ E LRSALATS++G +A I N DE + Sbjct: 607 LS-RDSVFNTLEARELTLVLYAMADPKDERALRSALATSLLGYSAEAIHHFNQDEDSRQT 665 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700 ++E+F Q+W KRG+MP L L S I E LL GERRLTD H+ ELLQ+ T+ Sbjct: 666 LLEQFAQLHQVWLKRGIMPALLTLASQTQIIERLLNAEEGERRLTDFRHLGELLQQKATE 725 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT-- 758 L+ AL+ W Q ++E + + Q+RLES+++LVQIVTIHKSKGLEYP+ ++PF++ Sbjct: 726 LDGSSALINWFEQALIE-NQPSEEAQLRLESEQNLVQIVTIHKSKGLEYPICFVPFVSLS 784 Query: 759 --NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 N + YHD + + D+ + E + + E LAEDLRLLYVALTR V C L Sbjct: 785 RDNRKKPSPMLYHDNNKL--IWDIEQSEEGWERQKRETLAEDLRLLYVALTRPVLKCYLY 842 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTC---IEALCDDDIAW-QTAQ 871 +A R + +H++A+G LL + + D L T ++A D I+ + A Sbjct: 843 IANHSRFTKKSGMSSQLHETAIGYLLGIEDKACDYERLLTQAKRLQASTPDAISLKELAP 902 Query: 872 TGDNQPWQVNDVSTA-------ELNAKTLQRLPGDNWRVTSYSGL-QQRGH-----GIAQ 918 G + + A K L+R WRV SYSGL + H G Sbjct: 903 AGSDVALSAEPIILARDESIETHFAPKVLKRPHLTPWRVGSYSGLVKHLAHEKVLPGADD 962 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFP--RGASPGTFLHSLFEDLDFTQPVDPNWVREK 976 ++ P +DV +++E TP +F RGA+ G+F+H + E +DFTQ + E+ Sbjct: 963 EVFPEVDV-------IIDEVDNTPSRFTFERGANAGSFMHLVLELIDFTQA--ETDLDEQ 1013 Query: 977 LELG----GFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPL 1031 L + G + W VL W +L APL ++ + L+QL + K VEMEFYLPIS L Sbjct: 1014 LPIAMSKYGIDETWVEVLKLWYIDLLHAPLATDSSLKLAQLMPQQKLVEMEFYLPIS-AL 1072 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 A +L+ L+ +F SAG L F ++GMLKGFIDL F H +Y++ DYKSN LG+D S Sbjct: 1073 NADKLNALLTEFG-YSAG---LSFDDLQGMLKGFIDLTFEHNNQYFIADYKSNHLGDDLS 1128 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 Y M A+++HRYDLQY +YTLALHRYL R+A+YDY+ H GG YLFLRG+ P Sbjct: 1129 QYHYSNMQQAIRSHRYDLQYIIYTLALHRYLSLRMANYDYDLHMGGSFYLFLRGMSVNSP 1188 Query: 1152 QQGIYTTRPNAGLIALMDEMFAG 1174 Q G+Y +P LI +D +F Sbjct: 1189 QSGVYYDKPPKLLIEKLDALFTN 1211 >UniRef50_A4XTT1 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Gammaproteobacteria RepID=A4XTT1_PSEMY Length = 1209 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/1221 (40%), Positives = 682/1221 (55%), Gaps = 72/1221 (5%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70 L PL G RLIEASAGTGKTFTI+ALYLRL+LG GG AAF PL ++LVVTFT+AAT Sbjct: 9 LTFPLHGSRLIEASAGTGKTFTISALYLRLILGHGGDAAFREPLLPPQILVVTFTDAATR 68 Query: 71 ELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKA--QAAQWLLLAERQMDEAAVFT 128 ELR RIR+ + E + + L L + + A+ L LA + MDEAAV T Sbjct: 69 ELRDRIRARLVEAATVFRGDAQGDDLLRELRSDFAQTQWDECARRLELAAQWMDEAAVST 128 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWK 188 IHG+CQRML +AF+SG LF Q L D S L + D+WR+HCYPL Q V W Sbjct: 129 IHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHCYPLQGAALQWVAGVWG 188 Query: 189 GPQALLRDINRYLQGEAPVIKAPPPD--DETLASRHAQIVARIDTVKQQWRDAVGEL-DA 245 P L + L E V + D L R Q +A + W D + L DA Sbjct: 189 TPAGLGSRLRPLLGEEGEVATQALGELLDGALQQRE-QALAELKAPWLTWADELQLLLDA 247 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 + + +D +K W+ K+ WA E L + + L + K GE P Sbjct: 248 AVAAKQVDGKKLQARFYNPWLAKLREWAGGEEPRLDLGTGFIRLTPEGLAEAWK--GEAP 305 Query: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAE---IRETVAREKRRRGELGFDDMLSRLDSAL 362 HP +A+ L A+ ++ D +R+ EKR+R E+GFDDML RLD+AL Sbjct: 306 AHPALKAMALLKAQLDALPDPADAALRHAAAWVRQRFDWEKRQRAEMGFDDMLVRLDAAL 365 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAI 419 + +G LA IR +FPVA+IDEFQDTDP QYRIF ++ ++ + L +IGDPKQAI Sbjct: 366 QGSNGARLAEVIRRQFPVALIDEFQDTDPLQYRIFDTLYEVEANRGDCGLFMIGDPKQAI 425 Query: 420 YAFRGADIFTYMKAR-SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD------AFMFRE 472 Y+FRGADI TY++AR + + HY L+ N+RS+ MV++VN +F + + AF+ R+ Sbjct: 426 YSFRGADIHTYLRARRATLGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRDGGEGAFLLRD 485 Query: 473 -IPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEGESCGVGDYQSTMAQVCAAQIRDWL 530 +PFI V + G+ + + +G+ QPA+ +W L E G Y MA A++I L Sbjct: 486 DLPFIEVGAQGRGEV--WSVEGQAQPALTVWHLASDEPVAKGVYLDAMAAGAASEIVRLL 543 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 GQ G+A + +R SDI+VLVR EA +R L + SVYLS++DSVF Sbjct: 544 DLGQCGQAGFIKDGVLSALRPSDIAVLVRDFNEAQAIRGELAARGVRSVYLSDKDSVFAA 603 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 EA+++L L+A P+++ LR+ALA++ +GL ++E LN DE W+ V +F YRQ Sbjct: 604 QEARDLLLWLRACAEPDQDRPLRAALASATLGLALSELEQLNLDERTWERRVMQFRDYRQ 663 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 W+++GV+PMLR L+ + + L+ GER LT++LH++ELLQ+A +L+ E AL+R Sbjct: 664 RWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQAAAELDGELALIRH 723 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR-VQEQAFYH 769 L + + A Q +RLESD+ LV++VTIHKSKGLEYPLV+LPF+ FR V ++ Sbjct: 724 LGELLTGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFVCAFRPVDDKKPLQ 783 Query: 770 DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 L L A +S+ AE ERL EDLRLLYVALTR+ C LGVA L G K Sbjct: 784 IHDGERRRLVLKADDDSLARAERERLGEDLRLLYVALTRARHACWLGVADLKIGNGKK-- 841 Query: 830 DTDVHQSALGRLLQKGEPQDAAG-LRTCIEALCDD-DIAWQTAQTGDNQPWQVNDVSTAE 887 + +H+SALG LL G P A+G L + D A Q +++ + Sbjct: 842 -SRLHESALGYLLGGGLPLAASGELVNWLAPFASGLDSAVSPVPPASEQRYRMIEEGQFV 900 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ-----DLMPRLDVDAAGVASVVEEPTLTP 942 + +T R ++W + SYS L+ +Q D P D+ + +V+++ Sbjct: 901 PHWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHEDAAP----DSPAMQNVIDDEDPLL 956 Query: 943 ------------HQFPRGASPGTFLHSLFE----DLDFTQPVDPNWVREKL----ELGGF 982 H+FPRG +PGTFLH L E + T DP+ +RE L + G Sbjct: 957 ALAPLPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFATLAQDPHRLREALARRCQRRGL 1016 Query: 983 ESQWEPVLTEWITAVLQAPLNETG---VSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 +S +P L +W+ A+L PL G V L+QL+ Q E+EF+ E + LD Sbjct: 1017 QSWIDP-LQDWLLALLSQPLPLAGADTVVLAQLT--QYQPELEFWFEARE-VDVRLLDQW 1072 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 ++Q + PL + GM KGFIDLVF H+GRYY+ DYKSNWLG D AYT++A+ Sbjct: 1073 VQQCELPGVARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSDDGAYTREAIE 1132 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTR 1159 A+ +HRYDLQY LY LALHR LR R+ DYDY+ H GG +Y+FLR PQQG Y R Sbjct: 1133 VAIVSHRYDLQYVLYVLALHRQLRLRLPDYDYDRHVGGALYVFLRA-----PQQGAYLAR 1187 Query: 1160 PNAGLIALMDEMFAGMTLEEA 1180 P LI +D +F G +E A Sbjct: 1188 PPRELIERLDALFMGEAVEGA 1208 >UniRef50_Q080D8 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gammaproteobacteria RepID=Q080D8_SHEFN Length = 1276 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/1290 (37%), Positives = 710/1290 (55%), Gaps = 153/1290 (11%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ L LP G LIEASAGTGKT+TI+ LYLRLLLG GG A PL+ E++LVVTFT A Sbjct: 9 LNALTLPFSGSSLIEASAGTGKTYTISGLYLRLLLGHGGKA----PLSCEQILVVTFTNA 64 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI--DDKAQAAQWLLLAERQMDEAA 125 AT ELR RIR I+ L ++ E+L ++ D++ A + L LA + +DEAA Sbjct: 65 ATEELRDRIRKRINLAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEAA 124 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIH FCQR+L+ AFES +LFE + D+S + A DFWR CYPLP +AQ + + Sbjct: 125 IFTIHAFCQRVLSDMAFESSLLFESEFTLDDSEFLHHAVRDFWREVCYPLPPFLAQAISD 184 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 + P L + + L V+ P +TL + +Q ++R + Q D+ EL Sbjct: 185 VFAEPDVLAQKLRPLLGASQAVLSKQPLAFKTLQQQLSQSISRFTLLWQSLHDSTLEL-- 242 Query: 246 LIESSGIDRRKFNRSNQ-----AKWIDKISAWAEEETNSYQLP--ESLEKFSQRFLEDRT 298 ++S ++ ++F + ++ D IS W + LP ++LE+ + E + Sbjct: 243 -LQSLPLNGQRFGKGADGYPKLSQLFDSISNWVKFGQG---LPPIKALEQLA--LSELKL 296 Query: 299 KAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDML 355 GG P PL + I++LL + + RA IR+ A +K++R + DD+L Sbjct: 297 NKGGVIPSADEAPLLDHIERLLELINQLIPSFLVRAREGIRQRFAGQKQQRNLMTPDDLL 356 Query: 356 SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH------------- 402 L + S++ LA AI RFPVA+IDEFQDTDP Q+ IF +++ Sbjct: 357 LSL-AMALSQNPITLAHAIAKRFPVALIDEFQDTDPLQFTIFNQVYQQPLASQLDLTADA 415 Query: 403 ------------------------HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 ++ +LL+IGDPKQAIYAFRGADI+TY+ AR + Sbjct: 416 RVNSPDDDSKSNDDNGNDNIGNDANKGRLSLLMIGDPKQAIYAFRGADIYTYIAARQQTQ 475 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP- 497 AHY LDTN+RS+ +VN VN+LFSQ D F+ + IP+ VK+ + A + + + T P Sbjct: 476 AHYNLDTNYRSSTQLVNGVNQLFSQHQDPFISQAIPYDIVKTPS-SAANKHLSEATTNPT 534 Query: 498 AMKMWLM-EGESCGVGDYQST--MAQVCAAQIRDWLQAGQRGEALLMNG--DDARPVRAS 552 A+++ L+ E + G+ + +A A++I+ L Q+G + N +A+P+ A Sbjct: 535 ALRIRLLAEDDVNGLNKTTARQRLAADAASEIKRLLTEAQQGLCKVNNSIEQEAKPLIAK 594 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 DI++LVR R EAA ++ L+ +I +V+LS RDSVF T+EA+EM LL A+ TP+ E + Sbjct: 595 DIAILVRDRNEAAVMKAELSARKIGAVFLS-RDSVFNTIEAREMAILLYALATPKDERAI 653 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE 672 R+ALAT ++G NA I N DE V+++F + Q+W++RGVMP L S + Sbjct: 654 RAALATELVGFNAQRIHQFNQDEEQRQQVLDQFTHWHQLWQQRGVMPALLNFASETKLIH 713 Query: 673 NLLA------------------------------------TAGGERRLTDILHISELLQE 696 L+ A GERRLTD H++ELLQ+ Sbjct: 714 RYLSQSVTADINNDSTYSSNNDNNSDNSFNDADDDNAADLKASGERRLTDFRHLAELLQQ 773 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 T+L+ AL+ W Q ++ ++ QQ+RLES+++LVQIVTIHKSKGLEYP+ ++PF Sbjct: 774 KATELDGSSALINWYEQQLI-GNNGGDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPF 832 Query: 757 ITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 ++ R ++ YH + D++A E + + E LAEDLRLLYVALTR V+ Sbjct: 833 VSLARGNKKRPAPMMYHKNEQL--IWDIDATDEGWEQLKQETLAEDLRLLYVALTRPVYV 890 Query: 813 CSLGVAPLVRRRGDKKG-DTDVHQSALGRLLQKGEPQ-DAAGLRTCIEALCDDDIAWQTA 870 C L +A R+ K G + +H++ +G LL + + D A ++ + A IA A Sbjct: 891 CYLYIANQSRQL--KAGISSQLHETGIGYLLGITDKKTDFALIQAKVNA-----IATLPA 943 Query: 871 QTGDNQPWQVNDVSTAELN-------AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR 923 + + ++D A+++ AK + R+ WRV SYSGL + H + + P Sbjct: 944 MSVECLGNDIDDSVLADIHDNNDPLVAKKVTRVQSLAWRVGSYSGLVK--HLPHERVAPG 1001 Query: 924 LD--------VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP---VDPNW 972 D + + EP L F RGA+ G+F+H + E DFTQ + P Sbjct: 1002 ADDEDFTDELIQLQLQDELTSEPELDRFTFERGANAGSFMHLVLELFDFTQANTELTPAL 1061 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPL------NETGVSLSQLSARNKQVEMEFYLP 1026 + + G E+ W+ L W +L APL +T ++LSQL + K VEMEFYLP Sbjct: 1062 TKAMKQYGFDEALWQQPLMTWYQQILVAPLFIEPSSEDTSLTLSQLGMKQKMVEMEFYLP 1121 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 IS L ASQL+ +++Q ++ L+F ++GMLKGFIDL F H+G++Y+ DYKSN L Sbjct: 1122 IST-LQASQLNHILQQHGYVAG----LDFDTLKGMLKGFIDLTFEHKGQFYIADYKSNHL 1176 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 G++ S YT AMA A+ AHRY+LQY LYTLALHRYL R+ +Y+Y+ H GG YLFLRG+ Sbjct: 1177 GDNYSDYTHSAMAKAIDAHRYNLQYILYTLALHRYLSLRLPNYNYQQHIGGCYYLFLRGM 1236 Query: 1147 DKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 EHP G++ +P LI +D +F G T Sbjct: 1237 HPEHPGAGVFYDKPPQALIEQLDRLFTGNT 1266 >UniRef50_C0QI07 RecB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI07_DESAH Length = 1242 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/1253 (37%), Positives = 671/1253 (53%), Gaps = 109/1253 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD L PL G RLIEASAGTGKT+TIAALY+RL+LG G F RPL E+LVVTFT A Sbjct: 5 LDALTFPLHGTRLIEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVTFTNA 64 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAA 125 AT ELR RIR+ + E +P + L ++ D A L A MDE+A Sbjct: 65 ATQELRERIRARLTEACAFFRGRGGGDPFLQGLKDDYSPGDLPAMANLLERAALWMDESA 124 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 + TIH +CQRML +AF+S LF+ L + L +A DFWR + YP E Q + + Sbjct: 125 IHTIHAWCQRMLFQHAFDSLSLFDLTLEPGDDDLLEEAVWDFWRTNFYPRDVETLQALGQ 184 Query: 186 T--WKGPQALLRDINRYLQG------EAPVIKAPPPDD-ETLASRHAQIVARIDTVKQQW 236 P LL+ + + G +A +++ P D + L R + I + ++ W Sbjct: 185 ATGLTTPADLLKKVRPLMAGINNADIDAGGLESVPLDPFQMLEQRRSAI----EKARRVW 240 Query: 237 RDAVGELDALIESSGIDR----RKFNRSNQAKWIDKISAWAEEETNSYQLPES--LEKFS 290 + E L++ + D+ ++ ++ WI + +W + + LP LEKFS Sbjct: 241 QAGFKEAIDLVQKARADKTLNNNRYRPASLDTWIADMDSWVNGQGD---LPTDTVLEKFS 297 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAE--PLSIRDLVITRALAEIRETVAREKRRRGE 348 L T G P HP F+A+D+L L ++ + EI + V K R Sbjct: 298 ATGLAQGTSKKGTPPAHPAFDALDRLNDSLGSLDVKQALFAHGAREINDRVMAAKARLSR 357 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 +GF+D+++RL AL + LA IR +FPVAMIDEFQDTDP QY +F I+ Q ++ Sbjct: 358 MGFNDLITRLGQAL-ARPDTCLAQLIRAQFPVAMIDEFQDTDPVQYTLFNTIYLDQEQSG 416 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTDD- 466 L +IGDPKQAIYAFRGADI TY++AR + YTLD N+RS+ GMV +VN++FS Sbjct: 417 LFMIGDPKQAIYAFRGADIHTYLRARQDAGDRLYTLDKNFRSSSGMVAAVNQIFSHGAKF 476 Query: 467 ---AFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD---YQSTMA 519 AF+F+E IPF PV + +++ F+ +G+ M +W M+ G Y STMA Sbjct: 477 PLGAFLFKEMIPFDPVLAQDRDET--FMVEGQAAVPMTLWQMQDGPVAKGGPDGYLSTMA 534 Query: 520 QVCAAQIRDWLQAGQR---GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 A+++ L GQ+ G L P+ SDI+VLVR EA +R AL L + Sbjct: 535 GAAASEMVRLLNLGQQRPQGAGFLQKDGSFVPLVPSDIAVLVRDVNEARHIRSALDLRGV 594 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 SVYLS+R+SVFE+ EA ++++L+A P E +R+ALAT ++ L+ +ETLNNDE Sbjct: 595 RSVYLSDRESVFESQEAVSLVYILKACFDPTNERAVRAALATPLLDLSLKTLETLNNDES 654 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 AW+ V +F +++ WR +GV+PM+RAL+ ++ LL+T GER+LT++LH+ E+LQ Sbjct: 655 AWETAVIQFKSFQKTWRTKGVLPMVRALVFEFDVGARLLSTLAGERKLTNLLHLGEILQA 714 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 L+ E ++RWL I P + +RLESD+ LV+++TIHKSKGLEYPLV+LPF Sbjct: 715 ESAALDGEQGVIRWLGDQIARPQISVEDDILRLESDQRLVRVITIHKSKGLEYPLVFLPF 774 Query: 757 ITNFRVQEQA-----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 + R QA HD L +N ++++ A+ ERLAE+LR+LYVALTRS + Sbjct: 775 ACSARKLTQANASVVTAHDPDG-TPFLVVNPDAKALEAADQERLAEELRMLYVALTRSCF 833 Query: 812 HCSLGVAPLVRRRGDKKGD-TDVHQSALGRLLQKGEPQDAAGLRTCIEAL--CDDDIAWQ 868 C LG+ V + K G+ T +H+SA+G L+ + A L + L D I Sbjct: 834 ACFLGIG--VMGKTLKSGEVTTLHESAMGYLMAGQTMVETAQLPGLLNELKGGSDAIVIT 891 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA 928 + + + L A+ +NWR+TSYSG+ +A MP V A Sbjct: 892 PLPPPGKEMFVPGSELPSLLPARLFNGTIPNNWRITSYSGI------LANAAMPEKGVVA 945 Query: 929 AGV-------------------------------------ASVVEEPTLTPHQFPRGASP 951 V S + P L+ H FPRG P Sbjct: 946 FPVDVEVPDSASQDQLQEAQLQEAQIQEEQIQEQQIQMAMVSNIHSPALSIHGFPRGPEP 1005 Query: 952 GTFLHSL--------FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN 1003 GTFLH L F+ + +P+ + ++ G+E W VL +W+ + PL Sbjct: 1006 GTFLHDLLEWAAIQGFDRVAQDRPLALDHIQRACVARGWEP-WTGVLVDWLMDFVTVPLT 1064 Query: 1004 ETGV--SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 GV +L+ L + + EMEF S + ++D L+ P L ++ GM Sbjct: 1065 VDGVTFTLADLGKQQCRPEMEFMF-ASHGVAVGKVDQLVCSHVLPGNLRPVLNPNRLNGM 1123 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 +KGFIDLVF + RYY+LDYKSN LG+++ AY AM AM HRYDLQY LYTLALHR Sbjct: 1124 VKGFIDLVFCFKDRYYILDYKSNHLGDEAGAYDAAAMNQAMLGHRYDLQYVLYTLALHRL 1183 Query: 1122 LRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 L+ R+ DYDY+ GG +YLFLRGV+ QG+Y RP LI +D F G Sbjct: 1184 LKSRVVDYDYDRDLGGAVYLFLRGVNSTG--QGVYFDRPPKDLIETLDRFFQG 1234 >UniRef50_Q0HJB9 Exodeoxyribonuclease V, beta subunit n=11 Tax=Shewanella RepID=Q0HJB9_SHESM Length = 1274 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/1269 (38%), Positives = 696/1269 (54%), Gaps = 132/1269 (10%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LDPL LP G RLIEASAGTGKT+TI+ LYLRLLLG G S + L E++LVVTFT A Sbjct: 10 LDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSES----LNCEQILVVTFTNA 65 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLLAERQMDEAA 125 AT ELR RIR I L ++P + L ++ + +A A + LA + +DEAA Sbjct: 66 ATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAA 125 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQR+L AFES +LFE D+S + A DFWR CYPLP +AQ++ Sbjct: 126 IFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLAQIIAS 185 Query: 186 TWKGPQALLRDINRYL-QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 + P L++ + L EA +K P LA +Q V R + RDA+ EL Sbjct: 186 EFGDPDGLVKQLRALLGASEAKPLKPVQPFAR-LAESLSQSVQRFKLAWPRGRDALLELL 244 Query: 245 ALIESSG--IDRRKFNRSNQAKWIDKISAWAEEETNSYQLP--ESLEKFSQRFLEDRTKA 300 + +G + N A+ D++ + + LP + LE S E + Sbjct: 245 HSLPLNGQRFGKASDNYPKLAEMFDQLDNFL---AFGHGLPPLKVLEALS--LSELKLNK 299 Query: 301 GGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 GG P PL + ++QL A +I+ + A I E A++K+++ L DD+L+ Sbjct: 300 GGVIPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDDLLTT 359 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-------------- 403 L +A+++ + L A+ +RFPVA+IDEFQDTDP Q+ IF I+ Sbjct: 360 LAAAMQANP-DTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGVDTQDPAAAEP 418 Query: 404 QPET----ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 +P T +LL+IGDPKQAIYAFRGADI+TY++AR + AHY LDTN+RS+ +V VN Sbjct: 419 KPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTEAHYFLDTNYRSSRNLVVGVNH 478 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS--T 517 LF+Q D F+ + IPF PVK+ A + V A+++ L+ G+ + T Sbjct: 479 LFAQHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNSAALRLKLLSEGDTGLNKASARQT 538 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 +A+ AA+I L G+ G P+ A DI++LVR R EAA ++ AL+ +I Sbjct: 539 LAEDTAAEITRLLTQAANGQCSTPKG----PLIAKDIAILVRDRNEAAVMKTALSKRQIG 594 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637 +V+LS RDSVFET+EA+EM +L+A+ +P+ E LRSALAT+++G A I N DE Sbjct: 595 AVFLS-RDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQ 653 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-------------------A 678 ++E F QIW+KRG+MP L +L +A + LL + + Sbjct: 654 RQRLLEHFFELHQIWQKRGIMPALLSLANATQMVARLLHSPILPSTDQAEQDAAAQLEAS 713 Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 GERRLTD H++ELLQ+ T+++ AL+ W Q +++ ++ QQ+RLES+++LVQI Sbjct: 714 NGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLID-NTGTDEQQLRLESEQNLVQI 772 Query: 739 VTIHKSKGLEYPLVWLPFIT----NFRVQEQAFYHDRHS---FEAVLDLNAAPESVDLAE 791 VTIHKSKGLEYP+ ++PF++ N R YH ++ E V DL E + A+ Sbjct: 773 VTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGWEQAK 832 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG-DTDVHQSALGRLL-------- 842 E LAEDLRLLYVALTR V+ C L +A R K G + +H++A+G LL Sbjct: 833 QETLAEDLRLLYVALTRPVYLCYLYIAN--HSRMLKAGLKSQLHETAIGYLLGITDTDCD 890 Query: 843 ----QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPG 898 Q AGL + A+ + +A D + L+A+ + R Sbjct: 891 FSRLQNAAKALVAGLESSPPAISIEVVA----DNIDANKLHTGGSDSQTLSARKVSRQYR 946 Query: 899 DNWRVTSYSGLQQRGH------GIAQDLMPRLDVDAAGVAS------------VVEE--- 937 WRV SYSGL + G ++ L D A+ +++E Sbjct: 947 TPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAADPLWAAPLWQEALLQEVEP 1006 Query: 938 ---PTLTPHQFPRGASPGTFLHSLFEDLDFTQ-PVD-PNWVREKLELGGFESQWEPVLTE 992 P L F RGA+ G+F+H + E +DFTQ P+D P + + + G W+P+L + Sbjct: 1007 QAQPLLNRFSFERGANAGSFMHLVLELIDFTQAPIDLPRELPKAMLQYGIAPVWQPILED 1066 Query: 993 WITAVLQAPLNETG---------VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 W VLQAPL + L+ L+ ++ VEMEFYLP++ L ++L+ L+ QF Sbjct: 1067 WYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNR-LKDTELNQLLGQF 1125 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 + L+F +++GMLKGFIDL F ++G++Y+ DYKSN LG++ AY A+ A+ Sbjct: 1126 GYDTE----LQFEELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAIS 1181 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 HRYDLQY LY+L+LHRYL R+ +YDY+ H GG YLFLRG+ ++P GIY +P Sbjct: 1182 DHRYDLQYILYSLSLHRYLAMRLPNYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKA 1241 Query: 1164 LIALMDEMF 1172 LI +D +F Sbjct: 1242 LILALDGLF 1250 >UniRef50_Q0AGC8 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Proteobacteria RepID=Q0AGC8_NITEC Length = 1228 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/1259 (38%), Positives = 702/1259 (55%), Gaps = 118/1259 (9%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPR-PLTVEEL 59 MS LD LPL G LIEASAGTGKTFTIA LY+RL+LG G AF LT E+ Sbjct: 1 MSQNITPLDLFTLPLTGSHLIEASAGTGKTFTIAMLYVRLILGHQGEFAFSGGALTPPEI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHE---------LRIACLRETTDNPLYERLLE-EIDDKAQ 109 LVVTFTEAAT ELR RIR+ + E + L +T +PL + L E + A Sbjct: 61 LVVTFTEAATKELRDRIRARLTEAARLFRADPINAQSLNDT--DPLQQLLFEYSPAEWAA 118 Query: 110 AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 A+ L LA MDEAA+ TIHG+C RML +AF+S LF Q+L D++ LR + D+WR Sbjct: 119 CARKLELAAEWMDEAAISTIHGWCNRMLREHAFDSQSLFTQELETDQTELRAEVVRDYWR 178 Query: 170 RHCYPLPREIAQVVFETWKGPQALLRDINRYLQ--GEAPVIKAPPPDDETLASRHAQIVA 227 YPL E + WK P L + + L + P + A P AS+ + Sbjct: 179 IFYYPLTLEEIVWINGYWKSPTELGKAVTPLLDYVDQLPDLSATDPSTIISASQENK-QN 237 Query: 228 RIDTVKQQWRDAVGELDALI---ESSG-IDRRKFNRSNQAKWIDKISAWAEEET-NSYQL 282 + +KQ W EL AL+ E++G ID RK W++K+ WA + ++ + Sbjct: 238 LLTKLKQPWALWADELQALLDAAEAAGQIDGRKLRADWYTNWLNKLRDWANDPAMDNVDI 297 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS----IRDLVITRALAEIRET 338 + E+ + + K G +P HP F+ I +L E L+ R +++ A I + Sbjct: 298 GKGWERLTSEGIAKAWKKG-TSPHHPAFDTI-PVLKEALNNLPDPRIELLSHAACWIAKK 355 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 ++ R ++GF+D+L+ L++AL GE LA IR +FPVA+IDEFQDTDP QYRIF Sbjct: 356 FDTIRKHRSQIGFNDLLTGLETALTGLYGERLAQVIRQQFPVALIDEFQDTDPVQYRIFE 415 Query: 399 RIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMV 454 I+ ++ + AL+LIGDPKQAIYAFRGADI TY+KAR V YTL+TN+RS MV Sbjct: 416 YIYEISSNRNDCALILIGDPKQAIYAFRGADIHTYLKARRAVEGRLYTLNTNFRSTQAMV 475 Query: 455 NSVNKLFSQTDD------AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 ++VN F+ ++ AF+FR +PF+ V++ G+ F +GET PAM + + Sbjct: 476 DAVNHCFASVENQADSRGAFLFRTGDGNPVPFLEVQANGRRDT--FQIEGETLPAMLLAV 533 Query: 504 MEGE-SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSR 561 + DY M+ +CA +I DWL G+ +A D + R VR DI++LV + Sbjct: 534 SAQQMELSKTDYIEQMSALCATRIVDWLNDGKSAKAGFAGQDMSFRAVRPGDIAILVNNG 593 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 EAA +R AL + SVYLS++D+V+ T +A E+ L A P+ + LR+AL+T+ + Sbjct: 594 NEAANIRQALLQRGVRSVYLSDKDTVYATRQATEVHRWLAACAEPDNDRLLRAALSTTSL 653 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA--- 678 GL +++ LN DE AW+ V +F GYR++W+K+GV+PMLR ++ + LLA Sbjct: 654 GLTLAELDALNTDEAAWEAQVIQFKGYRELWQKQGVLPMLRRILVDFKCGDRLLALKENL 713 Query: 679 ---GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GER LTD+LH++E+LQ+A LE EHAL+R+L++ I P+ A S+++RLESD L Sbjct: 714 NGQSGERILTDLLHLAEILQQASFTLEGEHALIRFLAEQIAAPEGEADSKKLRLESDSDL 773 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQA-----FYHDRHSFEAVLDLNAAPESVDLA 790 V++VTIHKSKGLEYPLV+LPFI R + + ++ D+ + + + L A PE + A Sbjct: 774 VKVVTIHKSKGLEYPLVFLPFICITRPIKNSDIPLKWHDDQGTLK--ISLAAHPEIMARA 831 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEP-- 847 + ERL ED+R LYVALTR+ + +G+AP+ + SA+G L + K P Sbjct: 832 DLERLREDVRKLYVALTRACYLTWMGLAPIKNK-----------SSAVGHLFRLKATPAE 880 Query: 848 QDAAGLRT--------CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD 899 Q L++ C+ D+++ A+T P + A R+ + Sbjct: 881 QYLDALQSFVQERPDFCVTDKPDNNLEQYVAETRSAPPGE----------ACRPLRMVRE 930 Query: 900 NWRVTSYSGLQQRGH----GIAQDLMPR--------LDVDAAGVASVVEEP-TLTPHQFP 946 NWR++SYS L+ G+ IAQ+ P+ L+ + V E+P ++T H F Sbjct: 931 NWRISSYSALRVDGNVPSTRIAQEDTPQAENLLEEQLERSFISLQPVSEQPASVTIHHFF 990 Query: 947 RGASPGTFLHSLFE---DLDFT-QPVDPNWVREKLELGGFESQWE---PVLTEWITAVLQ 999 +GA G FLH L E + FT D +R+ +E WE L +W+ +L Sbjct: 991 KGAEAGIFLHELMEWVANTGFTIVSSDETDLRDTIERRCKMRHWETWVAPLVDWVKRMLS 1050 Query: 1000 A--PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 P G+ L+ L+ + EMEF+ S + + LD + + S P L + Sbjct: 1051 TSLPFGSIGICLNTLTV--VKAEMEFWAEASN-VDLTLLDAAVIEQTLASRPRPHLTQSE 1107 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 + GMLKGFIDLVF+++GRYY+ DYKSNWLG YT AM ++A+RYDLQY +Y A Sbjct: 1108 LNGMLKGFIDLVFQYDGRYYVADYKSNWLGATDQDYTVAAMDEVIRANRYDLQYVIYLFA 1167 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 LHR L+ R+ DY+YE H GG LF+RG+D P G++ RP L+ +DE+FAG T Sbjct: 1168 LHRLLKSRLPDYNYEQHVGGAACLFVRGIDA--PTAGVHFERPPGTLMDTLDELFAGKT 1224 >UniRef50_A4CBT2 Exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CBT2_9GAMM Length = 1183 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/1214 (38%), Positives = 677/1214 (55%), Gaps = 76/1214 (6%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P+ +PL+G LIEASAGTGKT+TI ALYLR LLGL + PLTVE++LVVTFT Sbjct: 2 QGLNPITMPLKGVSLIEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTFT 61 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAATAE++ R+R I R A + D+ + + +L E+ + A L A + MD+AA Sbjct: 62 EAATAEIKDRVRKRIILARDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDAA 121 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQRML +AFESG+ F I D+S L +A D+WR Y L +E V Sbjct: 122 IFTIHGFCQRMLKQHAFESGVAFNLTFIMDQSELLTEALKDYWRTFVYGLTKERTAHVLA 181 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDET--LASRHAQIVAR--IDTVKQQWRDAVG 241 + P+ L + + L I+ DE ++ ++AR ID +K + A+ Sbjct: 182 YFPAPERLYKKVAALLSRSGAKIQPQINLDEVWQWQEQYLSLLARFKIDYLKSDFAAAI- 240 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF----SQRFLE-D 296 L++ D +K + +A ++ + A+ + E ++ + F + FL+ + Sbjct: 241 -LNS-------DLKKTKPAAKAPNLELLLAFCQSEQTVFEFGSDKKSFEIWAADNFLDPE 292 Query: 297 RTKAGGETPRHPLFEAIDQL--------LAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 K GG+T HPL + +L P++I +A + ++ +K+ + Sbjct: 293 MYKKGGKTFSHPLCQVFTELSELQQKLTFGMPIAIAQ----QATKWVSAALSTKKQEQRL 348 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 + DD+L++L AL S+ G+ LA+ I FPVAMIDEFQDTDP QY IF +I++ + A Sbjct: 349 ISPDDLLTQLHHALFSDGGDTLASQIAADFPVAMIDEFQDTDPIQYGIFSQIFNRE-SCA 407 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDD 466 +IGDPKQAIY FRGADIFTY+ A+ +V YTL NWRS+ G+VNSVN LF+ D+ Sbjct: 408 FTMIGDPKQAIYGFRGADIFTYINAKHQVSTEQQYTLGKNWRSSTGIVNSVNALFNHHDN 467 Query: 467 AFMF-REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAA- 524 +F+F ++IPF+ V++ GK G+ A + ++E ++ V M ++ A Sbjct: 468 SFIFNQDIPFLAVEAQGKTAEQALYLDGKAVTAFEFCVLEHDA-PVTSKAYAMPRLAAHF 526 Query: 525 --QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 +I LQ Q G A + + V+A+DI VLVR R EA+ +++AL+ I SVYLS Sbjct: 527 SDKIATLLQQAQAGRATI----GSHAVQAADICVLVRDRNEASFIKEALSKQGIASVYLS 582 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 RD V ++ A +L L A+ E+ R LA + LN I L +E W + Sbjct: 583 -RDGVLQSPLALHLLNFLTALHGQYDESAYRGVLAGPLFNLNYQQIYQLAENEQTWQQYL 641 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG---ERRLTDILHISELLQEAGT 699 F IW K+G M ML L+ N+A L A G ER LTD H++E+LQ+ Sbjct: 642 ALFSELSDIWYKKGAMAMLELLLMRNNLAG--LWQAMGLPVERWLTDFRHLAEILQQKQL 699 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 +LE LVRW +Q+I+ D++ S Q+RLESD LV+IVT+H SKGLEYPLV++PF Sbjct: 700 ELEGSLRLVRWFAQNII--DTSKESAQLRLESDAKLVKIVTMHASKGLEYPLVFMPFAVG 757 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 FR + YH E V +L S LAE ERLAEDLRLLYVALTR V C +G+ Sbjct: 758 FREASEQIYH--QDGELVYNLIKDDASQQLAEKERLAEDLRLLYVALTRPVHQCFIGMYN 815 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG----LRTCIEALCDDDIAWQTAQTGDN 875 + G+ K T + ++ALG LL G+ +A L A D+A D+ Sbjct: 816 IA--VGNSKSMT-IQRTALGHLLFAGQTLTSATDWHQLLNAFAAAHSADMAVSYFAETDS 872 Query: 876 QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV 935 + ++++ K NWR+TS+S L + ++ + P + ++ + + Sbjct: 873 KISLSDELTVPNYERKLFTGKIERNWRLTSFSALSY--NQASEHITPGFEDESHELDWLG 930 Query: 936 EEPT--LTPHQFPRGASPGTFLHSLFEDLDF----TQPVDPN-----WVREKLELGGFES 984 EE + L FPRGA G+ LH++FE++DF T P DP+ V ++L+ E Sbjct: 931 EEQSNELNQFSFPRGARAGSCLHAIFEEIDFQHPDTHPSDPSKNLGAVVEQQLQKYSIEP 990 Query: 985 QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 W+ V +WI VL PL+ G+SL++L A+ +EMEFYLP E L A+ ++ ++ Sbjct: 991 HWQLVAEQWIKRVLSTPLDADGLSLNKLGAQQCLIEMEFYLPF-ERLDATGINQVLDSVA 1049 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 S L+F ++GMLKGFIDL+F +G+YY+LDYKSN LGE +S Y Q M MQ+ Sbjct: 1050 SESVFKHNLKFETIQGMLKGFIDLIFEWQGKYYVLDYKSNHLGELASDYQQSNMEEVMQS 1109 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGL 1164 H Y LQY LY++ALHR L+ R+ADYD E H GGV YLFLRG+ + +GIY + + Sbjct: 1110 HHYHLQYLLYSVALHRLLKTRLADYDIEQHLGGVYYLFLRGMGE---GEGIYFKKIAKEI 1166 Query: 1165 IALMDEMFAGMTLE 1178 I +D MF TLE Sbjct: 1167 ILQLDRMFEQATLE 1180 >UniRef50_Q65TK4 RecB protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65TK4_MANSM Length = 1205 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1231 (35%), Positives = 667/1231 (54%), Gaps = 109/1231 (8%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 LIEASAGTGKTFT+A+LYLRLLL G F +PL VE++LVVTFTEAAT ELR RIR Sbjct: 6 LIEASAGTGKTFTMASLYLRLLLQ-AGENCFFKPLEVEQILVVTFTEAATQELRERIRHR 64 Query: 80 IH--ELRIACLRETTDNPLY----ERLLEEIDDKAQ---AAQWLLLAERQMDEAAVFTIH 130 IH + ++ E + ++ +L ++ D + A Q L +AE+ MD AA++TIH Sbjct: 65 IHLAKKQLTQYAENKNKQVFYGTENEILADLVDSLELPVAIQRLKIAEQNMDLAAIYTIH 124 Query: 131 GFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGP 190 GFC+RML AF SG+ F QL++DE+ L + + WR H Y L + + K P Sbjct: 125 GFCRRMLVQYAFNSGIHFNLQLVKDETELLTRFSNELWREHFYNLSFSLTNFIHRNLKSP 184 Query: 191 QALLRDINRYLQGEAPVIKAPPPD------DETLASRHAQIVARIDTVKQQWRDAVGELD 244 +L+ I +++ E ++ P + L+ + + I +K W ++ E+ Sbjct: 185 TDVLQKIRKFVTSENLNVELNEPHLLQLEFNRFLSQYIEKNINEIKQLKTAWIESENEIQ 244 Query: 245 ALIESSGIDRRKFNRSNQAKWI----DKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 LIE + + S +A + +KI WA++ET+ + +PE L K+ + D Sbjct: 245 RLIEKAKTQKLIKGASYKANHLPGRYEKIRQWAQDETD-FSIPEPLSKYFSQSAVDSYLT 303 Query: 301 GGETPRHPLFEAIDQLLAEPLSIR---DLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 E H +F+ D + S +++ + +R+ + R K E FDD+L Sbjct: 304 KNEPVNHAVFKQADSAVERAQSTELYVKVILYHYIQWMRDKLDRYKASHQEKSFDDLLRL 363 Query: 358 LDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--HHQPETALLLIGD 414 L A+ S E G L IR ++P AMIDEFQDTD QQY+IF +I+ Q ET ++IGD Sbjct: 364 LKEAVVSPEHGNELVKLIRYQYPFAMIDEFQDTDAQQYQIFSKIYIESAQAETGFIMIGD 423 Query: 415 PKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS-QTDDAFMFREI 473 PKQAIY FRGADIFTY+KA + H+TL N+RS ++++VN+LF+ + F++ I Sbjct: 424 PKQAIYQFRGADIFTYLKAAQQAKYHFTLGKNYRSEGNLIHAVNQLFNFSSAQPFLYENI 483 Query: 474 PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAG 533 F V+ GK Q RF+ + + + ++L E S +A+ CA I WLQ Sbjct: 484 EFSSVE-PGKAQG-RFILNEQQEAPLGVYLGEEPS------DEQLAETCANCISQWLQLA 535 Query: 534 QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 R A + + P+ DI+VLVR+ +EA +++AL +I SVYLS++ +VF+ EA Sbjct: 536 LRERAGIQTAEKFLPLEPKDIAVLVRNAKEAELIKNALQARQISSVYLSDKSNVFDCNEA 595 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWR 653 +E+L +LQA + P E + +A+AT++ L DI+ + E W+ ++ F GY++ WR Sbjct: 596 KELLLILQACLNPFSERNIVNAIATAIFCLTGADIQHIKQHETDWEKWIDRFVGYQRSWR 655 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 ++GV+ ML L A I + L+ GERR+TD+ H++ELLQEA T ES+ AL+RW + Sbjct: 656 QQGVLAMLHQLFLAEQIPQKLINMPNGERRVTDLFHLAELLQEATTLNESDAALLRWFER 715 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHD 770 I ++ +RLES++ LV+IVTIHKSKGLEY LVWLPFI+ Q + Y++ Sbjct: 716 QI-RGENTQDENIIRLESEQQLVKIVTIHKSKGLEYNLVWLPFISAKAKVNPQHISTYYN 774 Query: 771 RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR------ 824 + D++A D ERLAE++RLLYVALTR+ +H ++ + + Sbjct: 775 AQAQAVQWDMDACHN--DEVIKERLAEEMRLLYVALTRAKYHLAMALPDNFTKNWNALLY 832 Query: 825 -------GDKKGDTDVHQSA--LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN 875 G + TD +Q+ L Q+ P + +T D+I Q DN Sbjct: 833 ALTRGEIGTQAKLTDEYQTKPLLDDFAQRISPANIHYYQT-------DEIQGGGYQQKDN 885 Query: 876 QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ------------------------ 911 V E + K ++R +W ++S++ L Q Sbjct: 886 HAQYV----AQEFHGK-IER----DWTISSFTSLTQMHEWNSQKGRHEAFSPIVTTESAV 936 Query: 912 -------RGHGIAQDLMPRLDVDAAGVASVVE--EPTLTPHQFPRGASPGTFLHSLFEDL 962 I +P+++ D + +V +P FP G + GT LH FE Sbjct: 937 NFSLILDEAKDIDLTFLPKINEDKNNFSDIVTGYRQGYSPFDFPHGINVGTALHRFFEKN 996 Query: 963 DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEM 1021 +F QP+ +V+ + +W+ L +WI A+L PL N ++L+QL ++ EM Sbjct: 997 EFNQPIIDEYVKNLCQTIQLSEEWKQPLIQWIEAILTTPLFNGEPLNLAQLDKKDCIKEM 1056 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 +FYL + + L++++ + P F +++GML+GFIDLVFRHE +YY+LDY Sbjct: 1057 QFYLKLEGRFKLHSFNRLLQKYHTIKR--EPYLFDEIQGMLRGFIDLVFRHESKYYVLDY 1114 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSN+LG+D + Y + + M+ H YDLQY LYTLA+HRYL+ R+ DYDY+ HFGGVIY Sbjct: 1115 KSNFLGKDMAFYARSQLTDVMKNHHYDLQYLLYTLAIHRYLKQRVTDYDYDSHFGGVIYC 1174 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 FLRG++ +P GIY+ +P LI +D +F Sbjct: 1175 FLRGMNGRNPDYGIYSAKPARELIEGLDNLF 1205 >UniRef50_Q89AB3 Exodeoxyribonuclease V beta chain n=2 Tax=Bacteria RepID=EX5B_BUCBP Length = 1180 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/1197 (30%), Positives = 669/1197 (55%), Gaps = 43/1197 (3%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 ++ + ++++ +PL G+ LIEASAGTGKTF++ LY+RLLLG+ + + L ++E+L Sbjct: 2 ITTIPKSINVTTIPLSGKILIEASAGTGKTFSLTILYIRLLLGITNHVKYKKGLLIKEIL 61 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTE AEL RI++ I + AC+++ ++N + +LL +I D + L AE Sbjct: 62 VVTFTEHTRAELEIRIKTYIKIFKTACIKKYSNNYVLSKLLSKITDFPKTIDILSKAENS 121 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 + E +++TIHGFC ++L LN F S ++ + ++++ L + FW+ + L +I Sbjct: 122 IHELSIYTIHGFCYKILKLNKFNSELMLQNKILKHTYPLYLKISIKFWKYYFAFLSLDIT 181 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 ++ E + P+ LL++I L + K + + + ++ +I KQ+W + Sbjct: 182 SILLEYFNNPKTLLKEILPLLNKTQLISKLTKTKRKNIVQEYYILIKKIKLFKQKWANYS 241 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWA-EEETNSYQLPESLEKFSQRFLEDRTK 299 + + I + +++R + +SN +WI+ I+AWA +++T ++ +P L+ F F+ +T Sbjct: 242 HLIHSEIIKTNVNKRIYTKSNLKRWINNITAWATQKQTKNFFIPSELKYFRYSFIIKKT- 300 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 + F+ ID L S++++ I A EI+ +EK + +DD+++ Sbjct: 301 TSEKILDDKFFKFIDTFLDSKFSLKEIFIIDASLEIKAMFMQEKIKNRYFEYDDLITFCW 360 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 + + + + + I ++PVA+IDEFQDT+ +QY IF++I+ + E L+LI DPKQAI Sbjct: 361 NMVNKNNFNI-SQTILKKYPVALIDEFQDTNNKQYNIFKKIY--KKENLLILISDPKQAI 417 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 Y+F GADI +Y++A+S + Y LDTNWRS+P ++NS+N LFS+ + F+ + I F PVK Sbjct: 418 YSFSGADITSYLQAKSNIKNQYFLDTNWRSSPKIINSINLLFSRLKNPFLTKNITFYPVK 477 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 S+ N+ +F G+ QPA++ L + ++ + +Y+ ++ A I W+ +G +G A Sbjct: 478 SSRINKTTKFEVNGKNQPALRFLLNKNKNISINEYKEWISITTAKYISYWISSGIKGNAT 537 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 + + R V SDI+++VR+ EA ++ LT L I S+YL++++++F++ E E+LW+ Sbjct: 538 ITISNKVRTVNFSDIAIIVRNNLEAKTIQLELTKLNIQSLYLTSKNNIFQSKEILEILWI 597 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 LQA++ P E L+ A++T++M N +I ++ N+ W + +EF+ Y W G++ Sbjct: 598 LQAILNPNIERLLKRAMSTNIMSKNTKEIISIPNNHSYWIKLSQEFNQYLIFWNNYGILY 657 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 +++ L+ NI+ N + +IL+I ELL+E ++++ L+ WL ++I + Sbjct: 658 VIQQLIINYNISNNNNLLHNFSPNIKNILYIGELLEEKSITIKNKFLLINWLKKNITQDF 717 Query: 720 SNASSQQMRLESDK-HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAV- 777 + ++ +K + ++IV+IHKSKGLEYP+ +PF T F + E + Sbjct: 718 YLTKPKYIKPNYEKNNYIKIVSIHKSKGLEYPITIIPFAT------ITFNKTVSTVEKIC 771 Query: 778 LDLNAA---PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA---PLVRRRGDKKGDT 831 +LN + E + +ED+RLLYVALTRS+ HCS+G++ + +++ +K + Sbjct: 772 FNLNNTKIKKQKTLKIEKHKFSEDIRLLYVALTRSIIHCSIGISLAQTITQKKKIQKEKS 831 Query: 832 DVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK 891 + L ++Q G+ + ++ + + N + + T N++ Sbjct: 832 KFKINVLRYIIQSGKNHISTKKLYTELSILKKNKNIEIISEIPNIIKKNFQIPTLNTNSQ 891 Query: 892 TL-----QRLPGDNWRVTSYSGLQQR------GHGIAQDLMPRLDVDAAGVASVVEEPTL 940 +L R N+ TSYS L++ + + L+V E L Sbjct: 892 SLMHYQVSRKFNYNYNFTSYSQLKKNIKPSTMYSTLNTKKLFELNVKKKH---CFENKIL 948 Query: 941 TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 TPH FP G GT LH + +++ F + ++ NW+ +KL + +W +L W+ ++L Sbjct: 949 TPHTFPSGKIYGTLLHKILKNISFHKSINSNWLLKKLSEYNLDKRWCLILKNWMYSILYK 1008 Query: 1001 PLNET-GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLE----F 1055 L++ + LS+L ++N E++F LPI + L A +L+ + + + C LE F Sbjct: 1009 NLDKNYNLRLSKLDSKNYIKELKFLLPIKKKLTALKLNNIFQ-----THQCSSLENKLCF 1063 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 ++G+L G IDLVF + +Y+L+DYKSNW+G + +Y+QQ + ++ H Y+ Q QLY+ Sbjct: 1064 HPIQGILSGSIDLVFLWKTKYFLVDYKSNWIGNSNQSYSQQNIKKIIKKHHYNFQLQLYS 1123 Query: 1116 LALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 L LHRYL+ I +Y + +HFGG LF+R +++ Q GI+ + PN +I ++++F Sbjct: 1124 LVLHRYLKQHIKNYSFYNHFGGTYILFIRSINEIPSQNGIFYSIPNIEIIKKLEQIF 1180 >UniRef50_C9PR37 Exodeoxyribonuclease V beta subunit n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PR37_9PAST Length = 1234 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1258 (36%), Positives = 668/1258 (53%), Gaps = 110/1258 (8%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M D L+ + PL LIEASAGTGKT+TI +LYLRLLL G FP PLTVE++L Sbjct: 1 MMDSPRNLNAVSTPLNTVCLIEASAGTGKTYTIGSLYLRLLLQ-AGVENFPLPLTVEQIL 59 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACL-------RETTDNPLYERLLEEIDDKAQAAQW 113 VVTFTEAAT EL+GRIR IH+ + A + ++ P + L++ I+D A Q Sbjct: 60 VVTFTEAATNELKGRIRERIHQTKQAFIAYKEQGESALSEEPFLQELIQHIEDIDIAIQR 119 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +AE+ MD AA++TIHGFC+RML AF SG+ F +L++DE L ++WR Y Sbjct: 120 LKIAEQSMDLAAIYTIHGFCRRMLMQYAFNSGVHFNLELVKDEGELIQHCFNEYWREQFY 179 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQ--GEAPVIKAPP----PDDETLASRHAQIVA 227 PL A ++ PQA+ R++ + G P IK E LA I Sbjct: 180 PLSFAEANYIYNALSSPQAVRRELYSQISDFGLRPQIKQTELLALSLREFLAEYILPIQQ 239 Query: 228 RIDTVKQQWRDAVGELDALIES-----------SGIDRRKFNRSNQAKWIDKISAWAEEE 276 +I +KQ W E+ LIE+ + R F + KW+ + WA Sbjct: 240 QILDLKQAWLKDEDEIIGLIENELAKSYKKGEKKALKRTTFKCNFVPKWLQTMKDWARA- 298 Query: 277 TNSYQLPESLEK-FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRAL 332 N LP+ L K F+Q L + HP FE D+ +A R +++ L Sbjct: 299 NNRVNLPDVLVKYFNQEALNGYAEEDVTPITHPFFELADEAVATQKMQGIYRKVIMYHYL 358 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 +++ + + K E GF+D+L L AL SE G+ LA IR ++P AMIDEFQDTD Sbjct: 359 KGVQKLLIQHKLDHSEKGFNDLLRLLQEALYSEKGDELAQFIRLQYPFAMIDEFQDTDNI 418 Query: 393 QYRIFRRIWHH--QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA 450 QY+IF +I+ T ++IGDPKQAIY FRGADIFTY KA E +TL TNWRS Sbjct: 419 QYQIFSKIYIQLSSSPTGFIMIGDPKQAIYKFRGADIFTYFKAALETKQKFTLGTNWRSE 478 Query: 451 PGMVNSVNKLFSQTDDA----FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME- 505 +VN+VN LF ++ F++ +I F PV + + +F G+ QPA++ ++ + Sbjct: 479 ETVVNAVNGLFDFDENPLVQPFLYEQIQFQPV--SFRANKPKFYLNGKVQPAVQCYIGDL 536 Query: 506 GESCGVG----DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR----PVRASDISVL 557 G+ G D + +A+ CAA I WLQ+ +A+ D++ P+ I+VL Sbjct: 537 GKESRNGRLNEDQRYILAETCAASIYQWLQSAVENQAVFKASRDSKEEIEPLTEERIAVL 596 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 VR +EA ++ AL + I SVYLS+ +VF+ +AQE++ +L+A + P E + +A+A Sbjct: 597 VRDWKEAEVIKSALQKVGIASVYLSDNSNVFDCPQAQELVLILKACLNPFSERNILNAIA 656 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 TS+ L + +I + DE W V++F Y++IW+ + ++ ML L + IAENLL T Sbjct: 657 TSIWRLTSAEINQIKQDEQRWTNTVDDFVRYQRIWQTQSILAMLHQLFLEKKIAENLLMT 716 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 GGER +TD+LH++ELLQEA ES +L+RW + I + ++ Q+RLES++ LV+ Sbjct: 717 EGGERAVTDLLHLAELLQEASPLNESPASLLRWFEKKI-QGENRQGDLQIRLESERKLVK 775 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQE----QAFYHDRHSFEAVLDLNAAPESVDLAEAE 793 IVT HKSKGLEY LVWLPFI N Q ++++ +AVL + E D + E Sbjct: 776 IVTFHKSKGLEYDLVWLPFIANPPKSNDSLIQTYFNEEQ--KAVL-WDMEGEHSDEIQRE 832 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 AE++RLLYVALTR+ + + + + + +A+ LL +G D A + Sbjct: 833 LRAEEMRLLYVALTRAKYQVIIAMPE----------NFSSNWNAIQYLLTQGR-MDVASV 881 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVS-------TAELNAKTLQRLPGDNWRVTSY 906 RT + A D +A Q Q + + + +L+A T NW+VTS+ Sbjct: 882 RTALTAF-KDRMAKQNVQIAIDDLLDIEGKAPLLLAKPNEQLSAATFTGSIEQNWQVTSF 940 Query: 907 SGL---------------QQRGHGIAQDLMPRLDVDAAGV----------ASVVE--EPT 939 S + +Q +Q L D D V +++E E Sbjct: 941 SAISHFHEKSVLQHYLDAKQSAVDFSQFLSQEKDYDQNVVIDNTALVSFGTTILEGYEAD 1000 Query: 940 LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQ 999 +P FP A G LHS FE QPV+ + V + + E W+ L W+T +L Sbjct: 1001 YSPFDFPASARVGKVLHSYFEKYPLNQPVEMDAVEKICQQLQLEDVWQITLQRWLTQILH 1060 Query: 1000 APLNETGV-SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 PL T LS L+ ++ E+EFYL + + + L++++ S PL+ V Sbjct: 1061 TPLFSTSTFCLSDLAMKDCLKELEFYLKLENTFDVVRFNHLLQKYHLFS---EPLQLDVV 1117 Query: 1059 R----GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 R GML+GFIDLVFRH G+YYLLDYKSN LG S Y+ + + M H Y QY Y Sbjct: 1118 REGIKGMLRGFIDLVFRHNGKYYLLDYKSNKLGNLLSDYSTENLEKTMCKHYYHWQYLFY 1177 Query: 1115 TLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 +ALHRYL+ R +Y YE HFGGV+Y FLRG++ + +G+Y T P+ LI ++E+F Sbjct: 1178 CVALHRYLKERDPNYQYESHFGGVVYAFLRGMNGQSA-RGVYFTVPDVALIQELEELF 1234 >UniRef50_A1S6V0 Exodeoxyribonuclease V, beta subunit n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6V0_SHEAM Length = 1224 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/1240 (39%), Positives = 671/1240 (54%), Gaps = 100/1240 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD LP G RLIEASAGTGKT+TIA LYLRLLLG+G RP VEE+LVVTFT A Sbjct: 7 LDAFTLPFDGARLIEASAGTGKTYTIANLYLRLLLGIGQQ----RPFKVEEILVVTFTNA 62 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 AT+ELR RIR I + CL E +++ +LL + D+ A + L LA + +DEAA++ Sbjct: 63 ATSELRDRIRRRIQDGFRLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTLDEAAIY 122 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR+L+ AFES +LFE + D+S L A ADFWR HCYPL +IA +V + Sbjct: 123 TIHGFCQRVLSDMAFESALLFESEFTLDDSELLSMAAADFWRAHCYPLSADIAAMVQAKF 182 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW-RDAVGELDAL 246 P+AL +++ L V++ D LAS + ARI ++ W R A L L Sbjct: 183 ASPKALEQELKSLLGARDAVVELQMEDFSKLASGFS---ARIARLRLAWQRQAEDTLTTL 239 Query: 247 IE------SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 + S G F + W D ++AW+ + P + + + Sbjct: 240 CKLPLNGVSYGKAADGFPKLKN-HW-DTMTAWSLRCEGT---PPEKAMQAVAYGNIKLNK 294 Query: 301 GGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 GG+ P L ID+LL ++ + A EI+ K R + DD+L Sbjct: 295 GGQLPGPETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLLKH 354 Query: 358 LDSALRSE----------SGEV-------LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 L AL + + E+ L++ + +RFP+A+IDEFQDTDP Q+ IF + Sbjct: 355 LAKALGVQGSGSGSGFEPASEIDREIALRLSSEVASRFPMALIDEFQDTDPLQFAIFSAL 414 Query: 401 WHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 + QP LL+IGDPKQAIYAFRG DI TY+ AR AHY+L TN+RS+ MV +VN Sbjct: 415 YRQQPRAQGLLMIGDPKQAIYAFRGGDIHTYLGARRTAAAHYSLGTNYRSSSAMVQAVNT 474 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ-PAMKMWLMEGESCGVGDYQST- 517 +FS + F+ EIPF PV +A + A + G+TQ PA+++ L+ GE G + T Sbjct: 475 VFSVRERVFLSDEIPFEPV-AASDSGAKTLLIDGKTQGPALQIALL-GEDPDKGLNKQTA 532 Query: 518 ---MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 MA+ AA I L G A+L D RP+ A DI+VLVR R EAA ++DALT Sbjct: 533 RALMAEDAAAHIGQLLCLATEGRAVL--ADKQRPLLAKDIAVLVRDRNEAAFIKDALTRR 590 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 I +V+LS RD+VF T EA E+L +L A+ P E LR+A+AT +MG + +I N D Sbjct: 591 NIGAVFLS-RDNVFATKEASELLHVLAALAQPRDEKRLRAAMATRLMGWSLSEIAAFNQD 649 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 E A +E F+ + Q W+K+GVMP L A + E L +RRLTD H+ ELL Sbjct: 650 EEARRQALECFERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTDFRHLCELL 709 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 ++AG L+ AL+ W Q +L+P S+ + Q+RLES+++LVQIVTIHKSKGLEY L ++ Sbjct: 710 EQAGASLDGISALLGWFEQALLDPGSD-EAMQLRLESEQNLVQIVTIHKSKGLEYGLCYI 768 Query: 755 PFITNFRVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 PF++ R YH V DL E V+ +AERL EDLRLLYVALTR V Sbjct: 769 PFLSLARDSRGKPSPLLYHKDDRL--VWDLLQTDEGVECYDAERLGEDLRLLYVALTRPV 826 Query: 811 WHCSLGVAPLVRRRGDKKG-DTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQ 868 + C LG+A R K G ++V+++ALG LL + D LR E + + Sbjct: 827 YGCRLGLAN--HSRMLKAGISSEVYKTALGFLLGIDSKDCDINVLRQAAERVSSHAHGSE 884 Query: 869 TAQTGDNQPWQVNDVSTAELNA------KTLQRLPGDNWRVTSYSGL--QQRGHGIAQDL 920 D + + +A+ + + R+ ++WRV SYS L Q GH Sbjct: 885 IIGVVDIIQHDLTVLESAQHESTEPPSPRKPNRIGEESWRVGSYSALIAQGAGHTEHPGD 944 Query: 921 MPRLDVDAAGVA---------SVVEEP-------------TLTPHQFPRGASPGTFLHSL 958 + R + A SV+E P L+ FPRGA+ G+F+H + Sbjct: 945 IARTHEETTAAAIPGAGDESFSVLELPLPDEPEPASQDTGALSRFSFPRGANAGSFMHQV 1004 Query: 959 FEDLDFTQPVD--PNWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETG-VSLSQLSA 1014 E + F + P + + + G ++QW+PVL W ++ APL +E G +L LS Sbjct: 1005 LELIRFDAVAETLPEVLPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDEKGQFALGDLSP 1064 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 VEMEFYLP+S L L L+ + S F + GMLKGFIDL F H+G Sbjct: 1065 AQLLVEMEFYLPVSR-LKPGALGDLLALYGYRS----DFGFDTLNGMLKGFIDLCFSHDG 1119 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHH 1134 R+Y+ DYKSN LG+ Y + AM A+Q H YDLQY LYTLALHR LR R+A YDY+ Sbjct: 1120 RFYIADYKSNHLGDTLDHYHRDAMHTAIQDHHYDLQYLLYTLALHRLLRSRLAQYDYDKD 1179 Query: 1135 FGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 GG YLFLRG+ P G+Y +P LI +D +F G Sbjct: 1180 VGGCFYLFLRGMSASSPGTGVYFDKPPKLLIQALDALFEG 1219 >UniRef50_A1WWI3 DNA helicase/exodeoxyribonuclease V, beta subunit n=17 Tax=Gammaproteobacteria RepID=A1WWI3_HALHL Length = 1240 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/1255 (39%), Positives = 679/1255 (54%), Gaps = 126/1255 (10%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 A+ L+PLR PL G RLIEASAGTGKT+TIAALYLRL+L G AA+ + LT ++LVVTF Sbjct: 7 AKPLEPLRFPLYGSRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTF 66 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTD----NPLYERLLEEID---DKAQAAQWLLLA 117 TEAAT ELR RIRS + E A R+ +P + LL E ++AQAA+ L LA Sbjct: 67 TEAATRELRERIRSRLAEA-AAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELA 125 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 MDEAAV TIH +C RML +AF+SG LF Q L D L ++ D+WR YPL Sbjct: 126 AEWMDEAAVATIHAWCYRMLREHAFDSGSLFTQDLETDPGELLAESVRDYWRTFVYPLDP 185 Query: 178 EIAQVVFETWKG--PQALLRDINRYL---QGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 E Q+ + P AL R + R + + A P + LA R ++ + Sbjct: 186 EAFQLFRQAVGAADPDALQRALARLIGADEELADDADDPLLEPSGLAERLGAWHQALEQL 245 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRS---NQAKWIDKISAWAEEETNSYQL------- 282 K WRD ++A E + RR N + N + +++++AWA++ L Sbjct: 246 KAPWRDEREAVEA--EFLDLHRRVLNGTKYKNPQQLLERMAAWADDPAQPVPLTDKGKPD 303 Query: 283 PESLEKFSQRFLED--RTKAGGETPR--HPLFEAIDQLLAEPLSIRDLVITRALAE-IRE 337 P LE+ S L D R K G P H F+A+D+ + L + I RA A I Sbjct: 304 PGLLERMSATGLADPSRHKKGQSLPASLHRAFKALDRHVE--LDAPGVAILRAAARWITR 361 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 E+RRR +LGF D+L+RL ALR G LA IR++FPVA+IDEFQDTDP QY +F Sbjct: 362 RFQAEQRRRAQLGFQDLLTRLRDALRGPGGARLAQTIRSQFPVALIDEFQDTDPVQYELF 421 Query: 398 R---RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGM 453 RI + P L LIGDPKQAIY FRGADI +Y++AR+ HYTL N+RS+ + Sbjct: 422 ETVYRIADNDPGLGLFLIGDPKQAIYGFRGADIHSYLRARAATEGRHYTLPRNFRSSEAL 481 Query: 454 VNSVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 V +VN+LF++ + AF FR +PF PV++ G+ + F G PA+ +W Sbjct: 482 VGAVNQLFARAEGSWPAGAFAFRGGSGGGLPFHPVEAQGRGEF--FEEAGAEHPALNLWC 539 Query: 504 ME-GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL---MNGDDARPVRASDISVLVR 559 + G S Y T A+ CAA+I L G A+ G PVR D++VLVR Sbjct: 540 HDPGVSVAKNAYLPTYAEACAARIVALLNGGAARPAVTGFRHPGGHLEPVRPRDMAVLVR 599 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 + EA+ +++AL E+ SVYLS+RDSV T EA +++ L+A P E +R+ALAT Sbjct: 600 NHTEASAIQEALAAREVRSVYLSDRDSVLATAEADDLVRWLRACAEPTDEGLVRAALATP 659 Query: 620 MMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG 679 +GL +++ L DE AW+ +E+F YR++WR RGV+ ML L+ + + LLA +G Sbjct: 660 TLGLALSELDRLVTDELAWERRIEQFGEYRRLWRSRGVLAMLHRLLHDFGVPQRLLAISG 719 Query: 680 GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 GER LT++LH++ELLQ+ + + E AL+R L + + + Q +RLESD+ LV++V Sbjct: 720 GERSLTNLLHLAELLQQWAREHDGEQALIRHLVELRQQARNGVEDQILRLESDEDLVKVV 779 Query: 740 TIHKSKGLEYPLVWLPFITNF----------RVQEQAFYHDRHSFEAVLDLNAAPESVDL 789 TIHKSKGL+YPLV+LPF+ F RV +Q H R + LD E V+ Sbjct: 780 TIHKSKGLQYPLVFLPFVCTFRPVTARDAPRRVPDQ---HGRLRWRFELD----QEDVEA 832 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD 849 A++ERLAEDLRL YVALTR+ C +G+AP+ +G+ K + + +SA G LL + + Sbjct: 833 ADSERLAEDLRLFYVALTRAQHACWVGMAPIT--QGNTK-RSLLERSAAGYLLAGPDGVE 889 Query: 850 AAGLRTCIEALCDDDIAWQTAQT-GDNQPWQVNDVSTAELNAKTL-QRLPGDNWRVTSYS 907 GL +E D A ++ D V D + L +R D W + SYS Sbjct: 890 PGGLGAVLEQAAAADPAITVSEPLLDEASRFVGDPAAPPLGEPCQPRRRAADAWWIASYS 949 Query: 908 GL----------------------QQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF 945 L ++ GH + Q +A G A + H F Sbjct: 950 ALVRHDTAGRARSAPASAAEDVLREESGHALVQ--------EAGGDAG-------SWHGF 994 Query: 946 PRGASPGTFLHSLFE----DLDF-TQPVDPNW----VREKLELGGFESQWEPVLTEWITA 996 PRG GTFLH+L E L T P W V + G++ Q V W+ A Sbjct: 995 PRGPDAGTFLHNLLEWAATQLGLATAGAQPEWLDAEVERRCRFRGWDGQVATV-QGWLRA 1053 Query: 997 VLQAPLNETGVSLSQLSAR--NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLE 1054 +L A L+ G + R Q E+EF + ++PL A +LD L+ Q PP+ Sbjct: 1054 LLGAELSLPGAQTTLALGRLPTYQAELEFLIE-TQPLRADRLDDLVCQHLLPGRARPPVA 1112 Query: 1055 FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 ++ GMLKGFIDLV HEGRYY+ DYKSNWLG Y + + A + RYDLQ +Y Sbjct: 1113 PARLNGMLKGFIDLVCCHEGRYYVADYKSNWLGGGDGHYAPEYLEAEVLERRYDLQLVIY 1172 Query: 1115 TLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 TLALHR LR R+ DYDY+ H GG YLFLRGV + P QG++ RP LI +D Sbjct: 1173 TLALHRLLRARMPDYDYDRHVGGGFYLFLRGV--QAPGQGVFHARPPRALIEELD 1225 >UniRef50_A6VNJ9 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pasteurellaceae RepID=A6VNJ9_ACTSZ Length = 1227 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/1254 (37%), Positives = 678/1254 (54%), Gaps = 125/1254 (9%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+P+ PLQ LIEASAGTGKTFT+A+LYLRLLL G AF PLTVE++LVVTFTEA Sbjct: 6 LNPISTPLQTTTLIEASAGTGKTFTMASLYLRLLLQ-AGDNAFSVPLTVEQILVVTFTEA 64 Query: 68 ATAELRGRIRSNIH--ELRIACLRET--------TDNP--------LYERLLEEIDDKAQ 109 +T EL+ RIR+ IH + + A RET TDN L +R L ++D + Sbjct: 65 STEELKERIRARIHLAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKLDPN-E 123 Query: 110 AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 A + L AE+ MD AAV+TIHGFC+RML A SG+ F +L+ DE+ L + DFWR Sbjct: 124 AFRRLGFAEQNMDLAAVYTIHGFCRRMLMQYAVNSGIHFNLELVTDETDLLNRLANDFWR 183 Query: 170 RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR---HAQIV 226 Y + + + + PQ +L+ I YL+GE + P T+++ ++ Sbjct: 184 EQFYGQSFVVTEFIHRKLESPQQVLKKIRAYLKGETLKVSVNRPHLLTMSTAEFLQQELA 243 Query: 227 ARI-------DTVKQQWRDAVGELDALIES-----SGIDRRKFNRSNQAKWIDKISAWAE 274 + D +K W D E+ AL E+ S + KF R KI AWA+ Sbjct: 244 VHLAGSDNIPDELKSAWTDNFAEISALFEANYAGASVFNGNKFKRDYFIARTAKIQAWAD 303 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIR-------DLV 327 E +P+ L F+Q +L G HP F+ + + A + + ++ Sbjct: 304 SERRD--IPDELWYFTQDYLNGAVLKGKTAFSHPFFDYLAEQKARIEAAQTQLDLDEKIL 361 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQ 387 + L + E ++ KR E FDD+L L +AL+SE GE LA IR ++P AM+DEFQ Sbjct: 362 LFHYLRTLNERLSAYKRHHPEKSFDDLLRLLKNALQSERGEQLATFIRHQYPFAMVDEFQ 421 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-HAHYTLDTN 446 DTD QQY+IF I+ ++P+ ++IGDPKQAIY FRGADIFTY+KA + +TL N Sbjct: 422 DTDEQQYQIFSAIYVNRPDCGFMMIGDPKQAIYQFRGADIFTYLKAAKDAEQERFTLSKN 481 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS ++ +VN LF AFM+ +I F PV +AGK+QA FV++G Q M +L Sbjct: 482 YRSDGSLIRAVNGLFD-FPAAFMYDDIRFEPV-AAGKDQA-HFVWRGAQQAPMAFYLGSR 538 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM------NGDDARPVRASDISVLVRS 560 E A+ CA IR WL + +A + NG + R +R +I+VLVR Sbjct: 539 EQA---------AEYCADNIRQWLTSADENQAGFVMDTAQDNGRNLR-LRPENIAVLVRK 588 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 +A +++ AL I SVYLS+R +VF+ EA+E+ ++L A + P E + +ALAT + Sbjct: 589 GSDAEKIKSALQRRGIASVYLSDRTNVFDCAEARELAFILAACLNPFSERHIMNALATGI 648 Query: 621 MGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSAR-------NIAEN 673 + ++ + D + F+ Y++IWR++GV+PML + + +I Sbjct: 649 FAFSMAQLQQIKRQAELLDGWMTRFEDYQRIWRRQGVLPMLHRIFLDKGKRGEQADIVGQ 708 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 + A A ERRLTD+LH++ELLQEA ESE AL+ W + I D A QQ+RLES++ Sbjct: 709 IAAQANAERRLTDLLHLAELLQEAAVLHESESALLSWFERQIQGKDRQA-EQQVRLESER 767 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQ---EQAFYHDRHSFEAVLDLNAAPESVDLA 790 +LV+IVTIHKSKGLEY LVWLPF+ V+ E + +HD+ + EA+ D+NA + D++ Sbjct: 768 NLVKIVTIHKSKGLEYDLVWLPFLGFDDVKNRDEISIFHDKDA-EALWDMNARHQ--DIS 824 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR--------LL 842 E+LAE++RLLYVALTR+ + ++ + G K+ + AL R + Sbjct: 825 AKEKLAEEMRLLYVALTRAKYQVAMALP--AEFGGKKESYWNPVWYALSRGEIGDGMKIT 882 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAWQTA-QTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 K E Q A L +EA ++ +T +T W + L+A T NW Sbjct: 883 GKAEKQTAVLLSAHLEA---ENYTLETIPETVSGDKWLPQTNAEVSLSAATFTGKIEQNW 939 Query: 902 RVTSYSGL------QQRGHG------------------IAQDLMPRLDVDAAGVASVVEE 937 VTS++ L +R HG QD+ D +A + + Sbjct: 940 GVTSFTALSRMHEQNRRFHGEESAVEFTAIFDDALDYDEQQDVFSPTDEEANALWRNL-P 998 Query: 938 PTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAV 997 +P GA G LH FE DF+QP++ + + + W L W+ AV Sbjct: 999 AEYSPLALKGGAKFGVILHRFFEKHDFSQPIEDAELLALCQGLQLDETWIQPLKMWLEAV 1058 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 L PL+ G L+ + ++ EM+FYL + + L+RQ+ PL P Sbjct: 1059 LTTPLS-AGFKLTDIRPQHCLKEMQFYLNLDRTFDVKAFNLLLRQYHPLYQ--QPYLLDD 1115 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 +RGML+GFIDLV+RH+G+YYLLDYK+N L AY+++ + +Q H YDLQY LY+LA Sbjct: 1116 IRGMLRGFIDLVYRHDGKYYLLDYKTNLL----PAYSEERIRTDIQQHYYDLQYLLYSLA 1171 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEM 1171 LH +L+ R+ YDYE HFGGVIY ++RG+D + G++TTRP A LI ++E+ Sbjct: 1172 LHCFLQRRLPAYDYETHFGGVIYAYVRGMDGS-GKTGVFTTRPAARLIRGLEEL 1224 >UniRef50_P45157 Exodeoxyribonuclease V beta chain n=17 Tax=Haemophilus influenzae RepID=EX5B_HAEIN Length = 1211 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1241 (35%), Positives = 669/1241 (53%), Gaps = 102/1241 (8%) Query: 4 VAET--LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 +AET L+P+ LPL LIEASAGTGKT+TI +LYLRLLL G F RPL VEE+LV Sbjct: 1 MAETIPLNPITLPLNQISLIEASAGTGKTYTIGSLYLRLLLK-AGENNFSRPLNVEEILV 59 Query: 62 VTFTEAATAELRGRIRSNIHEL--RIACLRETTDNPLY--ERLLEEIDDKA---QAAQWL 114 VTFTE AT EL+ +IR I + ++ +T D + + L + D +A L Sbjct: 60 VTFTEMATEELKKKIRERITDAINKLTAFAKTQDKSAFKNDEFLTALCDNLNIFEAIHRL 119 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LAE+ MD AA++TIHGFC+RML AF SG+ F +LI+D+S L + +FWR H YP Sbjct: 120 KLAEQNMDLAAIYTIHGFCRRMLMQYAFHSGIHFNLELIKDQSDLLVRFANEFWREHFYP 179 Query: 175 LPREIAQVVFETWKGPQALLR----DINRYLQGEAPVIKA-PPPDDETLASRHAQIVARI 229 L E A + P +L D+ + LQ E +A P L + Sbjct: 180 LDFESANFIATELVSPANVLSLLKADLGKDLQVEIENKQALSVPIQIFLPQYLGGYQKAL 239 Query: 230 DTVKQQWRDAVGELDALIES-----------SGIDRRKFNRSNQAKWIDKISAWAEE--- 275 + +K W ++ E+ A+I + ++R+K+ WI+KI+ W+ Sbjct: 240 NELKAFWLESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRD 299 Query: 276 -ETNS----YQLPESLEKFSQRFLEDRTKAGGETPRH-PLFEAIDQLLAEPLSIRDLVIT 329 + N+ Y L S+EK + + TP + P+F +++ + L DL+ Sbjct: 300 YQINTTLKDYFLQSSIEKNCEESTDKNKDKKPATPFYSPIFADLEKRV-NALMTPDLLSK 358 Query: 330 RALAEIRETVARE----KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 L R+ + ++ K E FDD+L L AL+ G+ LA IR ++P AMIDE Sbjct: 359 LTLYHYRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQDAQGDELAEMIRFQYPFAMIDE 418 Query: 386 FQDTDPQQYRIFRRIWHHQPE--TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTL 443 FQDTD QQY IF +I+ PE T ++IGDPKQAIY FRGADIFTY+KA E + + L Sbjct: 419 FQDTDSQQYAIFSKIYRDNPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFEL 478 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS +V+ VN LF F+++ I F V S ++ LRF G+ +PA + +L Sbjct: 479 TKNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDS--RDDHLRFYLNGKVEPAYRFYL 536 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 E + ++ MA++CA I+ WL++ +A+ N D + ++A++I+VLVR + E Sbjct: 537 TESDKVN----KTEMAKICAISIQHWLKSAAENQAVFQNEDTYKTLQAANIAVLVRDKNE 592 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 AA V++ L L I SVYLS+++SVF++ A+E+ W+L+A + E + +A+AT++ GL Sbjct: 593 AALVKNELQKLGIASVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNAIATALFGL 651 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 NA DI + +E W + F Y+Q W+++G++ ML ++ + I+E LL+ A GER Sbjct: 652 NAADIHQIQQNEADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISERLLSQATGERD 711 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 LTD LH++E+LQ+A T ESE AL+ W + I Q+RLES++ LV+IVTIHK Sbjct: 712 LTDFLHLAEILQQAATLHESEAALLSWFEKQI--QGEARQEAQIRLESERQLVKIVTIHK 769 Query: 744 SKGLEYPLVWLPFIT----NFRVQEQAFYHDRHSFEAVLD-----LNAAPESVDLAEAER 794 SKGLEY LVWLPF+ + + Y+ + E + D LNA E E Sbjct: 770 SKGLEYDLVWLPFLAAPSKDPSKKYINIYYSKERDETLWDIENRNLNALCE-------ET 822 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT---DVHQSALGRLLQKGEPQDAA 851 AE+LRLLYVALTR+ + + + + DKK + + Q +G+ + + +D Sbjct: 823 FAEELRLLYVALTRAKYQMAFALPA----QFDKKWNALHYVLSQGEIGKEINLSDSKDTE 878 Query: 852 GLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ 911 L + D++ T + P + + A +WR+TS++ ++Q Sbjct: 879 TLLQTFKEKMQDNVEICTKPNLEALPTLSINTKNDDFKASEFTGNIEQDWRITSFTSIEQ 938 Query: 912 -------------RGHGIAQDLMPRLDVDAAGVAS-VVEEPTLTPHQFPRGASPGTFLHS 957 + H + D +A +++ ++ E PRG GT LH Sbjct: 939 AHRRQNYFTESAGKKHAVFDDAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHR 998 Query: 958 LFEDLDF-----TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQ 1011 FE+ F T+ +D +R+ L+L + + L W+ + PL NE G++L+ Sbjct: 999 HFENCYFSDLANTEEIDK--LRQSLQL---DETFTESLQNWLQQISHTPLSNEIGIALAD 1053 Query: 1012 LSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR 1071 L+ ++ EM FYL I E + ++ L + L+F Q++GM++G IDLVFR Sbjct: 1054 LANKDCIKEMPFYLAIREHFDVEAFNHTLKAHHHLPS--ESLQFEQIQGMVRGSIDLVFR 1111 Query: 1072 HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDY 1131 H G+YYL+DYKSN+LG + Y Q+A+ M YD QY +YTLALHRYL+ + YDY Sbjct: 1112 HNGKYYLVDYKSNFLGSTLADYNQEALKKEMLHSHYDWQYLIYTLALHRYLQSVVPHYDY 1171 Query: 1132 EHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 FGGV YLFLRG++ E PQ G++ RP+ LI +D +F Sbjct: 1172 ARDFGGVFYLFLRGMNGE-PQSGVFYDRPSVELITELDGVF 1211 >UniRef50_C9R4S1 Exodeoxyribonuclease V, beta subunit n=5 Tax=Pasteurellaceae RepID=C9R4S1_AGGAD Length = 1221 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1240 (35%), Positives = 669/1240 (53%), Gaps = 97/1240 (7%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+P+ +PL LIEASAGTGKT+T+ +LYLRLLL G AFP L VE++LVVTFTE Sbjct: 4 LNPISIPLNAISLIEASAGTGKTYTMGSLYLRLLLQ-AGENAFPHVLNVEQILVVTFTEM 62 Query: 68 ATAELRGRIRSNIHELR--IACLRETTDNPLYER------LLEEIDDKAQAAQWLLLAER 119 AT EL+ +IR I++ + + ++T D+ ++E+ L + I D A Q L LAE+ Sbjct: 63 ATEELKRKIRERIYDAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTLAEQ 122 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 MD AA++TIHGFC+RML AF SG+ F +L +E L WR H Y P + Sbjct: 123 NMDLAAIYTIHGFCRRMLMQYAFNSGIHFNLELSGEEDELLLHLAQKLWRAHFYSQPYAV 182 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPP-------PDD-ETLASRHAQIVARIDT 231 ++ + + P ++ +I ++ E + + P PD L Q A+ Sbjct: 183 SEFIQKHLISPANVIHNIKKFAGTELKLPQNRPHFFDGTLPDFLAKLTDYSQQFAAQTAE 242 Query: 232 VKQQWRDAVGELDALIES-----------SGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 VK+ W + ++ L+E+ ++RR F + + KW+ + AWAE + + Sbjct: 243 VKKHWLENEADIAQLLETEVNTKYKSAKEQKLNRRSFTSTTRLKWLAMMKAWAESDKADF 302 Query: 281 QLPESLEKFSQRFL-EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL-----AE 334 P +F Q + E + + + H LF ID+LL L+ + ++++AL Sbjct: 303 --PGCFSRFGQTAMNEQKGEEAKDALMHWLFVEIDELLQ--LAEQQELLSQALWFHYLQM 358 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 + + K E F+D+L L AL A IR +FP AMIDEFQDTD QY Sbjct: 359 LNTQLVEYKLNHSEKSFNDLLRLLKEALYHPDNTEFARLIRYQFPFAMIDEFQDTDAVQY 418 Query: 395 RIFRRIWHHQPET------ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 +IF +I+ QP+T ++IGDPKQAIY FRGADIFTY +A + + L N+R Sbjct: 419 QIFSKIYVEQPQTDAQSDSGFIMIGDPKQAIYKFRGADIFTYFQAARQAQHRFNLAKNYR 478 Query: 449 SAPGMVNSVNKLFSQTDDA-FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 S +V+ VN+LF ++ F++++I F+PV + + +F G+ +PA++ ++ E Sbjct: 479 SHQHVVDCVNRLFDFSEQPPFLYKDIQFMPV--SARTDHPQFWLSGQPEPAVRFYVDEAS 536 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL-MNGDDARPVRASDISVLVRSRQEAAQ 566 + +A+ CA I+ WLQ+ A+ ++ D + ++ I+VLVRSR+EA Sbjct: 537 V------KENIAKACAVSIQYWLQSAVENSAVFRLDDGDKKTLKPESIAVLVRSRKEAEL 590 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 V++ L L I SVYLS +VF++ A+++L +L A + P E + +A+AT++ + Sbjct: 591 VKNELRHLGIASVYLSEDSNVFDSSAAKDLLMILTACLNPFYERHILNAIATAIFAQTSA 650 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 DI+ + DE W+ VE+F Y++ W+K+GV+ ML L I E L T G+R +TD Sbjct: 651 DIQRIRMDETRWEHWVEKFIHYQRTWQKQGVLVMLHQLFQQEKITEKLYPTVDGKRLVTD 710 Query: 687 ILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 +LH++ELLQEA T ESE AL+RW + I + ++ QQ+RLES+ LV+IVTIHKSKG Sbjct: 711 LLHLAELLQEAATLNESEAALLRWFEKQI-QGENRQKEQQVRLESELRLVKIVTIHKSKG 769 Query: 747 LEYPLVWLPFI---TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 LEY LVWLPFI + FR Y+D + D + + E+ L + E AE LRLLY Sbjct: 770 LEYDLVWLPFIGYASTFRGDRITTYYDETQGAVLWDYDKSHEA--LVQQEDFAEQLRLLY 827 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VALTR+ + +GV + H + R +K D+ L + A Sbjct: 828 VALTRAKYQLVIGVPQTFETKWSSLLYVLTHGAIQTR--EKPNAYDSLPLLEKLVARAPQ 885 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAE--LNAKTLQRLPGDNWRVTSYSGL----QQRGHGIA 917 + Q A T D P Q+ + A+ L+A NW VTS+S + Q + + A Sbjct: 886 G-SVQIANTADLIPLQLQAHAEAQIPLHAAKFTGNIEQNWTVTSFSAIEAIHQNKAYFKA 944 Query: 918 Q-------------DLMPRLDVDAAGVASVVEEPT----------LTPHQFPRGASPGTF 954 Q DL D + G ++ T +P FP G + GT Sbjct: 945 QQMAESAVDFPSVFDLGKDYDFNEQGQSTESIRETAADESAYPFGYSPFDFPHGINIGTA 1004 Query: 955 LHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQL 1012 LH E DF +P++ + +++ + E W P L +WI A+L PL+ ++ + L L Sbjct: 1005 LHRFLEKTDFDRPLNEDKIQKLCQWLQLEETWLPSLQQWINAILHTPLSTQDSTLQLVNL 1064 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + ++ EM+FYL +++ + + ++Q L + PL+F ++GML+GF+DLVF H Sbjct: 1065 TRQHCVKEMQFYLKLNQTFDVTAFNQTLQQHHHLPS--EPLQFEAIKGMLRGFMDLVFYH 1122 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +YYL DYKSN+LG ++ Y ++ AM + YD QY YTLALHRYL+ R A+YDY+ Sbjct: 1123 NEKYYLADYKSNFLGVEAQNYVGTSLQQAMLTNHYDWQYLFYTLALHRYLQQRDANYDYD 1182 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 HFGGV Y FLRG++ E+ Q G++ +P+ LI ++ +F Sbjct: 1183 THFGGVFYCFLRGMNGEN-QNGVFFDKPDYALIQALENLF 1221 >UniRef50_Q3IJ14 Exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=2 Tax=Alteromonadales RepID=Q3IJ14_PSEHT Length = 1213 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/1248 (36%), Positives = 664/1248 (53%), Gaps = 121/1248 (9%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL----GGSAAFPRPLTVEELLV 61 + L+PL +PL G+ LIEASAGTGKT+TI LYLR LLG+ ++ +PL+VE++LV Sbjct: 2 QALNPLTMPLTGQSLIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQILV 61 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT+AAT E++ R+R+ I R A L + + L ++ +DDK +A L A + M Sbjct: 62 VTFTDAATQEIKDRVRNRIITARDALLGQDPKDELIAGVIAAVDDKHRAFDLLDAAAKSM 121 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEAA+FTIHGFCQRML +AFESG+ F + I DE + + DFWR YPL +E Sbjct: 122 DEAAIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKEKTD 181 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 + + P+AL ++ L I D+ +R I+ R+ K+ + Sbjct: 182 AILGVFAAPEALFGKVSSILNKANAQITPQVNLDDVWQARDEYII-RVPAFKKAVLEQ-- 238 Query: 242 ELDALIESSGIDRRKF-NRSNQAKWIDKIS----AWAEEETNSYQLPESLEKFSQRFLED 296 E A I+ SG+ K R ++ + E T+ Y S E +S L D Sbjct: 239 EFIAAIKGSGLSGSKTPGRKGSLAALEAFCLGGDLFFEFGTSKY----SFEVWSSENLSD 294 Query: 297 RTKAGGETP--RHPLFEAIDQLLAEPLSIRD----LVITRALAEIRETVAREKRRRGELG 350 + P HPL DQL A +I V+ A ++ V + K+ + + Sbjct: 295 ISNYKKNQPLFTHPLLTEFDQLAALNNTINQGLAIAVVQHAAKWVKAAVIKRKQEQSVIT 354 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 DD+LS L SAL +E G VLA I FPVAMIDEFQDTDP QY IF +I+ Q T L Sbjct: 355 PDDLLSNLHSALNNEQGNVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIY-QQEHTTLA 413 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 +IGDPKQAIY FRGADIFTY+ A+ V +TL TN+RS+ +V+SVN LF + ++F Sbjct: 414 MIGDPKQAIYGFRGADIFTYIGAKEAVQKQQQFTLGTNFRSSSDVVSSVNSLFGKHANSF 473 Query: 469 MFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-------EGESCGVGDYQSTMAQ 520 ++ + IPF V + GK F+ G+ A + + + + G Q +A Sbjct: 474 IYNDAIPFNAVAAKGKKADESFLIDGQPATAFEFCVFSDTAADEKNKPTGKAIGQQHLAT 533 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A +I L ++G A + +PV A+DI +LVR R EA ++ AL+ +I SVY Sbjct: 534 FFANKIVTLLTQAEQGRACI----GEKPVSAADICILVRDRVEAQIMKKALSTAKIASVY 589 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 LS R+SVF + +L L A+ E+ LR LA + L+ +I L +DE W Sbjct: 590 LS-RESVFSQELSHHLLNFLTALHGQYDESLLRGVLAGPLFCLSYNEIYALADDEAQWQE 648 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG-ERRLTDILHISELLQEAGT 699 + F IW K+G M ML LMS ++ ER LTD H+ E+LQ+ Sbjct: 649 HLNFFAQLSHIWNKQGAMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQI 708 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 +LE L+RW +Q + + D + Q+RLESD +LV+IVT+H SKGLEYPLV++PF + Sbjct: 709 ELEGTLRLLRWFAQKVSQQD--GETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASG 766 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 +R ++A YH+ + + DL+ +++ AE ERLAEDLRLLYVALTR+V C++G+ Sbjct: 767 YRETKEALYHNNGAL--IYDLSKGDDALQKAEQERLAEDLRLLYVALTRAVHFCAIGMYN 824 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKG-EPQDAAGLRTCIEALC------------DDDIA 866 + + + + + SALG +L G E + R + C +D+ Sbjct: 825 IGQGQSSRLA---IQSSALGHVLFAGLEITSSQIWRNHLADFCSEHTGMDYQQFTSEDLL 881 Query: 867 WQTAQTGDN-----QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLM 921 Q + +N Q +N+V+ ++R NWR TS+S L + H L Sbjct: 882 AQGTLSFNNSADAQQTLSINNVTA------NIER----NWRATSFSALSFKKH--IDHLA 929 Query: 922 P-RLDVDAAGVASVVEE---PTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-------- 969 P R D D V+E P++ + FP+GA PG+ LH +FE +DFT P++ Sbjct: 930 PGRSDEDHEKDEFAVQEGEAPSV--YSFPKGAKPGSCLHEIFEQIDFTSPIEHPVNKEHN 987 Query: 970 -PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG---------------------- 1006 ++ LE W+ + +WI VL PLN+ Sbjct: 988 LAEVIKRSLEKYHISEHWQDITEQWILDVLACPLNDDSNANINTSGNDTSANSSSVNSNG 1047 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLD-TLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 +SLSQL+ + VEMEF LP+ + L A QL+ LI+ F + LEF V+G+LKGF Sbjct: 1048 LSLSQLAPSDCLVEMEFNLPL-KSLSAPQLNEILIKHFGFEHS---KLEFSHVKGLLKGF 1103 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL+F H+G+YY+LDYKSN+LG +++ Y + AM +H+Y LQY +YT+ALHR L+ R Sbjct: 1104 IDLIFCHQGKYYILDYKSNYLGSNAADYEHDMLEQAMSSHQYHLQYLIYTVALHRLLKQR 1163 Query: 1126 IADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 IADY E H GGV Y FLRG+ QG+Y + + ++D +F+ Sbjct: 1164 IADYSVETHLGGVYYTFLRGMP---AGQGVYFKKLTTEQVTILDGLFS 1208 >UniRef50_A1TWK0 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Marinobacter RepID=A1TWK0_MARAV Length = 1241 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1257 (40%), Positives = 679/1257 (54%), Gaps = 124/1257 (9%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFT 65 LDPL LPL G LIEASAGTGKTFTIA LY+RL+LG G S + + L LLVVTFT Sbjct: 11 NLDPLTLPLNGSALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLLVVTFT 70 Query: 66 EAATAELRGRIRSNIHELR------IACLRETTDNPLYERLLEEIDDKAQAAQW------ 113 EAAT ELR RIR+ + + L T + L +L + D A W Sbjct: 71 EAATKELRDRIRTRLTQAAEVFSEAADSLEPTPETALIHKLRD--DSYPDPASWPECRKK 128 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 LLLA MDEAAV TIHGFC RML+ +AF+SG LF+ L D+S L D+WR Y Sbjct: 129 LLLAAEWMDEAAVSTIHGFCNRMLSEHAFDSGSLFKLTLETDQSELLEDVARDYWRTFVY 188 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIV----ARI 229 PLP + WK P L + + R L + + PP E + Q+V AR Sbjct: 189 PLPPALMDEALSHWKTPTDLRKAV-RNLIDDPAALGTPP---ENVHQAINQVVSERQARA 244 Query: 230 DTVKQ----QWRDAVGELDALIESSGIDRRK----FNRSNQAKWIDKISAWAEEETNSYQ 281 + +K QW+ V +L +G+++ K +++ K D + AWAE + Sbjct: 245 NELKAHPWAQWQQEVTDL-----LNGLNKAKRLHGGSKNAMLKVWDSLLAWAESDE---L 296 Query: 282 LPESLEKF------SQRFLEDRTKAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRAL 332 LPE L+ + L++ K PRHP F+AID LLA S + ++ A Sbjct: 297 LPEKLDSAAGYKNQTPEGLDNILKGDEPAPRHPAFDAIDALLAFGQNLPSAKSDILRHAS 356 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 + + EK++R E+GFDD+L+RLD AL G+ LAA IR +FPVA+IDEFQDTDP Sbjct: 357 HWVAARLEAEKQQRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVALIDEFQDTDPV 416 Query: 393 QYRIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWR 448 QYRIF RI++ +QP+T LL+IGDPKQAIY FRGADI TY++AR V A YTL TN+R Sbjct: 417 QYRIFNRIYNVEANQPDTCLLMIGDPKQAIYGFRGADIHTYLQARLGVQARTYTLGTNYR 476 Query: 449 SAPGMVNSVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPA 498 SA MV+ VN++F +D AF+F +PF V + G + + GE QP+ Sbjct: 477 SADTMVSGVNRVFEYSDQQSPKGAFLFGNGDSTPLPFQSVAANGTKRL--WAVNGEIQPS 534 Query: 499 MKMWL-------MEGESCGV--GDYQSTMAQVCAAQIRDWL---QAGQRGEALLMNGDDA 546 + W EG G+ G + +A+ CA++I L QAGQ G L N D Sbjct: 535 LVFWTHESGEEDKEGNPKGLAKGTATADVAETCASEIARLLTLGQAGQAGFVLPDNPADL 594 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 PV SDI+VLV +R EAA VRDAL I SVYLS+RDSV + EA E+L L+A P Sbjct: 595 EPVEPSDIAVLVNNRNEAAAVRDALGRRRIKSVYLSDRDSVLTSREANEVLCWLRAFAEP 654 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 + +R+ALAT +G + ++ L DE + +E F Y+Q W+ +GV+PMLR+ + Sbjct: 655 RQLAFIRAALATPTLGQSWQALDRLLTDELILEREIERFQRYQQQWQSQGVLPMLRSFLM 714 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 + LL GERRLTDILHI+ELLQ+ QL+ EHALV +Q + D + Sbjct: 715 DFEVPGRLLQRPDGERRLTDILHIAELLQQDSLQLDGEHALVHHFTQILRAADEEDEHRT 774 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ--EQAF--YHDRHSFEAVLDLNA 782 +RLESD LV+++T+HKSKGLEYPLV+LPF T FR + +QA+ YHD + + V + Sbjct: 775 LRLESDAGLVKVITVHKSKGLEYPLVFLPFGTAFRAENPKQAYVRYHD-DTGKLVTVFDP 833 Query: 783 APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL 842 PE ++ A+ ERL ED+R LYVALTR+ + +G A + + +QS LG + Sbjct: 834 TPEDIERADQERLGEDIRKLYVALTRARFATWVGAAAV----------DNWYQSGLGYAI 883 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWR 902 G P+ A +I N + A A R ++W Sbjct: 884 -AGTPEQPISQALASLAQGRPEIRITPLPEAGNTIF-TETAPEALGPALISNREAKEDWW 941 Query: 903 VTSYSGLQQRG--------HGIAQDLMPRLDVDAAGVASVVEEPTL----TPHQFPRGAS 950 + SYS ++ G G +D + ++ + E P + H FP+GA Sbjct: 942 IASYSTIEYTGMAGTGITFTGEVEDAQTQNLLEESAQDDTDEAPPVPAVRNHHHFPKGAG 1001 Query: 951 PGTFLHSLFE---DLDFTQPVD-PNWVREKLELGGFESQW----EPVLTEWITAVLQAPL 1002 PGTFLH L E F + VD P + E+L W EP L W+ +++ PL Sbjct: 1002 PGTFLHELLEWCTAQGFQRVVDNPELLHEQLSRRCGTRGWGDWIEP-LQHWLLELIRKPL 1060 Query: 1003 -----NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 E SL+QL + ++E F S + LD L+ ++ A P E + Sbjct: 1061 RLDRNGEDTASLAQLESLRPELEFWFE---SRNVSIHTLDKLVTRYTLNGADRPRAEANR 1117 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 GMLKGFIDLVF H+G+YY+LDYKSN LGED +AYT QAM A+ RYDLQY LY LA Sbjct: 1118 FNGMLKGFIDLVFEHKGQYYVLDYKSNALGEDDAAYTDQAMGQAILDKRYDLQYILYLLA 1177 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 LHR L+ R+ YDY+ H GG +YLFLRGV+ G +T +P LI +D +F G Sbjct: 1178 LHRLLKARLPGYDYDQHIGGAVYLFLRGVNSA--SGGAFTDKPPRMLIEQLDALFDG 1232 >UniRef50_Q12LP4 Exodeoxyribonuclease V, beta subunit n=3 Tax=Gammaproteobacteria RepID=Q12LP4_SHEDO Length = 1355 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1320 (36%), Positives = 693/1320 (52%), Gaps = 172/1320 (13%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 +S LD L LP G LIEASAGTGKT+TI+ LYLRLLLG G P PL+ E++L Sbjct: 30 ISPTRSPLDALTLPFLGSSLIEASAGTGKTYTISGLYLRLLLGHG---ELP-PLSCEQIL 85 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI---DDKAQAAQWLLLA 117 VVTFT AAT ELR RIR I ++ C + L++ ++ A + L LA Sbjct: 86 VVTFTNAATQELRDRIRKRI-QVAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLA 144 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 + +DEAA+FTIHGFCQR+L AFES +LFE + D+S + + DFWR CYPLP Sbjct: 145 LKSLDEAAIFTIHGFCQRILADLAFESSLLFESEFTLDDSEFLHHSVRDFWRETCYPLPP 204 Query: 178 EIAQVVFETWKGPQALLRDINRYL-QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 +A+++ + + P L + L EA + P ++ + + +K W Sbjct: 205 YLAEIIAKQFGEPDTLASKLRPLLGPNEAKTLGIIP----AFSTLTQDLTTSLSRLKLLW 260 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQA-----KWIDKISAWAEEETNSYQLPESLEKFSQ 291 + AL+ S ++ +F + + + D++S WA + Y LP + S Sbjct: 261 QSEQENTLALLHSLPLNGTRFGKQSDGYPKLGQMFDELSHWASAD---YGLPSTKALSSL 317 Query: 292 RFLEDRTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 E + GG P PL DQ+ A + + RA I++ +K +R Sbjct: 318 ALSELKLNKGGVVPSAAEAPLLAHFDQINALINNFIPAFLLRAKEGIKQRFMAQKHQRNL 377 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH------ 402 + DD+LS L SAL + + LA+AI RFPVA+IDEFQDTDP Q+ IF +++ Sbjct: 378 MAPDDLLSNLASALDANP-DTLASAIGQRFPVALIDEFQDTDPLQFNIFSKVYGKASSPS 436 Query: 403 ----HQPETA----LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMV 454 P TA LL+IGDPKQAIYAFRGADI TY++AR++ AHY L TN+RS+ +V Sbjct: 437 QEQLQAPNTATGLSLLMIGDPKQAIYAFRGADIHTYIQARNQTPAHYNLATNFRSSENLV 496 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-EGESCGVGD 513 VN+LF+Q D F+ + IPF VK+ + + ++ A+++ L+ E G+ Sbjct: 497 LGVNRLFAQHKDPFINQAIPFDSVKTPSSAAEKQLIGAQISKAALQIKLLAEDAEFGLNK 556 Query: 514 YQST--MAQVCAAQIRDWLQAGQRGEALLMNGDD-ARPVRASDISVLVRSRQEAAQVRDA 570 Q+ +A A++IR L Q+GE L + RP++A DI+VLVR R EAA ++ A Sbjct: 557 TQARQHLAADAASEIRQLLTQAQQGECQLSESNKPPRPLKAKDIAVLVRDRNEAAVIKAA 616 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L +I +V+LS RDSVF+TLEA+E+L LL+A+ P+ E LR+ LAT +MG +AL I + Sbjct: 617 LNARQIGAVFLS-RDSVFDTLEARELLLLLRALANPKDERLLRAGLATELMGYDALQIHS 675 Query: 631 LNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS---------ARNIAENLLAT---- 677 N DE + ++ +F + Q+W+++GVMP L AL + A+ ++ LA Sbjct: 676 FNQDEDSRQTLLSQFYHWHQLWQRQGVMPALLALANWSGLIPRFLAKGSTKDFLAKGSAN 735 Query: 678 ---------------------------------AGGERRLTDILHISELLQEAGTQLESE 704 A GERRLTD H+ ELLQ+ T+L+ Sbjct: 736 NSQNDSHNNSAAPQSTSATEFDTEQDETQPSELASGERRLTDFRHLCELLQQKATELDGS 795 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT----NF 760 AL+ W Q ++ ++ QQ+RLES+++LVQIVTIHKSKGLEYP+ ++PF++ Sbjct: 796 AALINWFEQQLIAANTT-DEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARGGN 854 Query: 761 RVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 R YH + + D++ E ++ + LAEDLRLLYVALTR V+ C L +A Sbjct: 855 RRPSPILYHKEG--QLIWDIHDTDEGLESYQQAHLAEDLRLLYVALTRPVFRCYLYIANQ 912 Query: 821 VRRRGDKKG-DTDVHQSALGRLL-QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 R+ K G + + ++ +G LL K + D + ++ ++A+ D A + + +N Sbjct: 913 CRQL--KGGVSSQLAETGIGYLLGAKDKKVDFSFIQGAVQAITADIPAIEVSLVSENPDT 970 Query: 879 QV---NDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG--------------------HG 915 QV ND + L KTL R WRV SYSGL + H Sbjct: 971 QVLKNNDDNDHHLAPKTLTRGYQTPWRVGSYSGLVKHQAHEKVSPGADDEEFTDELTLHF 1030 Query: 916 I---AQDLMPRLDVDAAGVASVVEEP-------------------TLTPHQFPRGASPGT 953 I A +++P D A + ++EP L F RGA+ G+ Sbjct: 1031 IEQEAHEILPEHLADKALTPAPLDEPEPLDGPVPLDEPVPLDEPAPLDRFSFERGANAGS 1090 Query: 954 FLHSLFEDLDFTQPVD--PNWVREKLELGGFESQ-WEPVLTEWITAVLQAPL-------- 1002 F+H + E DF+Q + +R+ + GF+++ W LT W ++ PL Sbjct: 1091 FMHLVLESFDFSQYQSQLSDAIRDAMVHYGFDAELWLEPLTTWYQEIVTTPLLIPEQTPR 1150 Query: 1003 --------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC-PPL 1053 + SLS+L+ +VEMEFYLPIS L + L+ L++ S G L Sbjct: 1151 NTQFAASQQQRRFSLSELNPSKIKVEMEFYLPISA-LGSLALNKLLQ-----SHGYQAQL 1204 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 F +RGMLKGFIDL F ++G++++ DYKSN LG Y MA AM H+Y LQY + Sbjct: 1205 SFDTLRGMLKGFIDLTFEYQGQFFIADYKSNHLGNSLEDYQMANMAKAMDEHQYHLQYII 1264 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 YTLALHRYL+ R+ YDY+ H GG YLFLRG+ H G++ RP+ LI +D +F+ Sbjct: 1265 YTLALHRYLKLRLPSYDYDTHIGGCFYLFLRGMSPTHVGTGVFFNRPSLDLIKALDSLFS 1324 >UniRef50_C8KZ30 Exodeoxyribonuclease V beta chain n=2 Tax=Actinobacillus minor RepID=C8KZ30_9PAST Length = 1204 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1232 (35%), Positives = 670/1232 (54%), Gaps = 97/1232 (7%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 +TLDP+ LPL LIEASAGTGKT TI LYLRLLLGLG + +PLTV ++LVVTFT Sbjct: 4 KTLDPITLPLNCSSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFT 63 Query: 66 EAATAELRGRIRSNIHELRIACL---------RETTDNPLYERLLEEIDDKAQAAQWLLL 116 +AAT ELR RIR NI AC +ET + +E+L E++++K +A L + Sbjct: 64 KAATEELRERIRENIQ----ACYTFFQERLSGKETQSDDFFEQLFEQVENKEEALLRLRI 119 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 AER++D A+VFTIH FCQ+ML AF+SG+ F+ +L D+S L + + WR YP+ Sbjct: 120 AEREIDLASVFTIHSFCQKMLFQFAFDSGVRFDIELKADQSELMLRLAQEVWREQFYPMG 179 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT-VKQQ 235 + Q++ + K PQ L+ I YL P + S + R T +K Sbjct: 180 LKETQIIAQELKTPQEALKLIRSYLNDALPELGKQQQIFSQPISDYLNEYQRFFTELKDY 239 Query: 236 WRDAVGELDALI-----------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPE 284 WR+ ++ I E + R+ + ++ WI + W E +++S+ Sbjct: 240 WREYRADIVTPIQNELEKKYKTGEKKALSRQSYKKNLVENWIKTVDQWVESDSSSFP-AN 298 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS-----IRDLVITRALAEIRETV 339 + E+F Q+ L ++ + GGE P F L + I+ +++ L +RE + Sbjct: 299 TFERFCQQMLIEKAEEGGEPLTSPHFAKNQAFLTAYQTQFEGKIKPVLLYHFLLSLREKI 358 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 A + E GFDD+L L+ AL+ E GE LAA IR +FP AMIDEFQDTD QY IFR+ Sbjct: 359 AEHQIHYAERGFDDLLKMLNQALKGERGEQLAAQIRAQFPFAMIDEFQDTDKTQYDIFRQ 418 Query: 400 IWHHQP--ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 I+ + ++IGDPKQ+IY FRGADIFTY++A ++ TL NWRS P +V SV Sbjct: 419 IFMSEKAENQGFIMIGDPKQSIYKFRGADIFTYLEAANQAQEKRTLSKNWRSFPKVVESV 478 Query: 458 NKLFS--QTDDA--FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 N+LFS Q +A F+ ++I F PV+ A F F+ + +L Sbjct: 479 NQLFSFPQHKEASPFLHKDIHFQPVR------AKEFTFQLMGSEHVICYLQTEFD----- 527 Query: 514 YQSTMAQVCAAQIRDWLQAGQ-RGEALLMNGDDARPV-RASDISVLVRSRQEAAQVRDAL 571 + A+ CAAQI+ L+A Q +G + D ++ + +A DI+VLVRSR +A+ V++AL Sbjct: 528 -EEQAAEHCAAQIQLQLKAMQEKGFGVEELNDSSKNIFQAKDIAVLVRSRNQASLVKNAL 586 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 I SV+LS + SV+++ A ++ +L+A + P + TL SAL + + GL A ++ L Sbjct: 587 AQRGIKSVFLSEKSSVYQSEVAYDLAVILKACLHPYHQKTLLSALGSHLWGLTAFELYQL 646 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 +DE W+ V F Y+Q+W+K+GV+ ML L I + L + ER +TD+ H++ Sbjct: 647 KHDESVWESYVANFVVYQQLWQKQGVLAMLHQLFLNEGIIQRLKSRENAERLITDLFHLA 706 Query: 692 ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 ELLQ ++E+E AL+RW +H LE D + +RLES+++LV+IVTIH SKGL+YP+ Sbjct: 707 ELLQSGSQEVENETALLRWYERH-LEDDEENDAYTLRLESEENLVKIVTIHGSKGLQYPV 765 Query: 752 VWLPFITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVD-LAEAERLAEDLRLLYVAL 806 VWLPF+ + + A YHD + D N E + L AEDLRLLYVAL Sbjct: 766 VWLPFVGKNSYENRNGGLATYHDEED-QKQWDFNEKDERIQRLRNQAEFAEDLRLLYVAL 824 Query: 807 TRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE----PQDAAGLRTCIEALCD 862 TR+ + +L + P +G +A+ LL GE ++ A + T + + Sbjct: 825 TRAEYQMNL-ILPAHFSKG---------WNAMHYLLSNGELALDNREEAAISTE-DYIKA 873 Query: 863 DDIAWQTAQTGDNQP----WQVNDVSTAELNAKTLQ-RLPGDNWRVTSYSGL-------- 909 +I + + QP W+ L+ + + R+P ++TS++ L Sbjct: 874 KNIPCKIEHLPE-QPRFDDWRAEADQQEVLSVQPFEHRIPQREGQITSFTALYSYHEWKR 932 Query: 910 QQRGHG----IAQDLMPRLDVDAAGVASVVE----EPTLTPHQFPRGASPGTFLHSLFED 961 Q + H + DL D +G+ E + L + FP G G LH FE Sbjct: 933 QSKDHNEIGSLLTDLAQDYDQSVSGLTQNDELEQLDTALNAYHFPHGTKIGNTLHQFFEH 992 Query: 962 LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 DF Q V+ + E + W + +W V P E VSLS+++ ++ E Sbjct: 993 YDFQQAVEKTEIIALCEKLALDEVWVEPICQWFEKVRTTPFGEDLVSLSEIAQESRLNEW 1052 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 +F+L ++ S+L+ L++++ L+ PPL+ + G ++GFID + + +G++Y++DY Sbjct: 1053 QFFLRLNNEDWVSELNHLLKEYSELAKHLPPLKLPDLEGFVRGFIDCIAKVKGKFYVIDY 1112 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIY 1140 KSN+LG Y+ + +A M +RYDLQY LYTLA+HRYL+ R+ + YDY+ FGGV Y Sbjct: 1113 KSNFLGYLPQDYSTENLAKTMGQYRYDLQYLLYTLAVHRYLKGRLGEQYDYQRDFGGVAY 1172 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 LFLRG++ PQ G+Y +P+ LI +D +F Sbjct: 1173 LFLRGMNGS-PQSGVYFDKPSLALIEGLDRLF 1203 >UniRef50_C5SAK7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAK7_CHRVI Length = 1284 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1309 (37%), Positives = 675/1309 (51%), Gaps = 161/1309 (12%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L+PL +PL G RLIEASAGTGKTFT+A LYLRL+LG GG AF R L E+L Sbjct: 1 MNTTIQRLNPLEVPLHGSRLIEASAGTGKTFTLAMLYLRLVLGHGGETAFARQLMPPEIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEI--DDKAQAAQWLL 115 VVTFT AAT ELR RIR + E + +++ +PL L +++ D A +A+ L Sbjct: 61 VVTFTNAATEELRDRIRRRLVEASLVFRNQSSPGSSDPLLLDLRDQMAGGDLAHSARRLE 120 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 LA MDEAA+ TIH +C RML +AF+S FEQ L D++ A D+WR L Sbjct: 121 LAAEWMDEAAISTIHAWCYRMLREHAFDSANAFEQTLENDDAERLQHAAEDYWRTFLLGL 180 Query: 176 PREIAQVVFETWKGPQALLRDINRYLQGEA--PVIKAPPPDDETLASRHAQIVARIDTVK 233 P E + + E W P L + + L P I PP DE + I T+K Sbjct: 181 PAERLEPILEQWSQPSDLAKAVRGLLSLAEYLPPIADPP--DEIVGRCLETRRHTIATLK 238 Query: 234 QQWR--DAVGELDALIE----SSGIDRRKFNRSNQAKWIDKISAWAEEETN--------- 278 WR D + L+ L E + + N++++AK +D + W E Sbjct: 239 TDWRTQDHIAALERLFEQAVKNKAFKQPSLNKTHRAKVLDGLRVWLETPDQTEPDIFGGQ 298 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPR-HPLFEAIDQLLAEPLSIRDLVITRALAEIRE 337 S+Q SL D KA + P L + + L P DL +T A+ ++ Sbjct: 299 SWQRMSSLA--IAEIWNDPAKAPVDDPACRALADLHETLTTLPDPTEDL-LTHAVHWLKS 355 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 V REKR+ L +D+L RLD AL+ E E LAAAIR +FPVA++DEFQDTDP QYRIF Sbjct: 356 HVEREKRQSAILTQNDLLIRLDQALQGEVRERLAAAIRRQFPVALVDEFQDTDPLQYRIF 415 Query: 398 RRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGM 453 I+ Q T +IGDPKQAIYAFRGADI TY+ AR+ HYTLD N+RS+ G+ Sbjct: 416 SSIYEIQANHAATGFFMIGDPKQAIYAFRGADIHTYLIARAATQGRHYTLDVNYRSSTGL 475 Query: 454 VNSVNKLF-----SQTDDAFMFRE-------IPFIPVKSAGKNQALR-FVFKGETQPAMK 500 + +VN LF + T AF+FRE +PF P + ++QA R G P ++ Sbjct: 476 ITAVNALFEHGERTATHGAFLFREPDGQGNPVPFHPARP--RDQAERTLTIDGRPCPPLQ 533 Query: 501 MWLMEGESCGVGDYQSTMAQVCAAQIR---DWLQAGQRGEALLMNGDDA-RPVRASDISV 556 W++ G + + A+ A R + L+ GQ G ALL G D RP+ SD++V Sbjct: 534 GWVIPPGPSGKLNKDAYRARTAEAAARAIAELLRLGQAGRALLPVGQDGERPLEPSDLAV 593 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 LV +R EA +R L L++ SVYLS R +VF+T A+++ LL+A+ P + +R AL Sbjct: 594 LVNNRNEADAIRTELRRLDVASVYLSERGNVFDTQIARDLAVLLRAIADPFDDRLMRQAL 653 Query: 617 ATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 AT ++G D++ LN DE W+ E WR++G +PML L+ IA LL Sbjct: 654 ATRLLGQGLTDLDRLNRDELHWETQGERLRDLNGRWRRQGFLPMLYRLIGEFRIAARLLG 713 Query: 677 TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS----NASSQQMRLESD 732 T GER +TD+LH+ ELLQ A +L+ E ALVR+L + I + D+ A ++Q+RLESD Sbjct: 714 TTDGERAMTDLLHLGELLQRASEELDGEQALVRFLEEAIADSDAATGETAEARQLRLESD 773 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNF-RVQEQAFYHDRHSFEAVLDLNAAPESVDLAE 791 LV++VTIHKSKGLEYPLV+LPFI + R Q + H L ++ + +A+ Sbjct: 774 ARLVRVVTIHKSKGLEYPLVFLPFIADCRRTQSKDRPLKTHDAAHRLQVHLGGDDALVAQ 833 Query: 792 A--ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ------ 843 A ERL EDLR LYV LTR+ LG+ + +D+ SALG LL Sbjct: 834 ADRERLGEDLRKLYVGLTRARHANWLGLGAI----------SDLEHSALGYLLGLDGQTV 883 Query: 844 --KGEPQ-DAAGLRTCIEALCDDDIAWQTAQ----------TGDNQPWQVNDVSTAELNA 890 G+ Q + G + + + D++ + + D P+Q AE Sbjct: 884 EWSGDDQPETEGSGSEAQGTSNGDLSARLRRLSCVTLIDPPAADPAPYQ------AEAEV 937 Query: 891 KTLQRLPGDNWR-----VTSYSGLQQRGH---------GI------AQDLMPRLDVDAAG 930 + P +WR ++SYS L + H G+ ++ + P V+ A Sbjct: 938 ELEGARPAPDWRPRAWWISSYSALSRGAHLADSEDLAAGVWAASETSRPVSPADAVETAD 997 Query: 931 VASVVEE--PTLTP--------------HQFPRGASPGTFLHSLFE-------DLDFTQP 967 +V EE T TP H FPRG GTFLH L E T P Sbjct: 998 DETVREELAETRTPETEMQTRSLGTGRLHDFPRGGRYGTFLHGLLEWAANLRAPTRPTGP 1057 Query: 968 VDPNWVREKLELGGFE------------SQWEPVLTEWITAVLQ--------APLNET-- 1005 P + S W L W+ +L AP + Sbjct: 1058 ARPGFAAALEAAQARRRMLTQRCASRRLSDWVEPLDAWLIELLDRTWHLDALAPPDGAVP 1117 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 + L+ L R QVE+EF++ S + + LD +I + P L + GMLKGF Sbjct: 1118 QLRLADLDPRRYQVELEFWIEASRVDLCA-LDRVIIRHTLDGRERPELAGSYLNGMLKGF 1176 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDLVF H+GRYYLLD+KSNWLG D SAY+ +AM AA+ RYDLQY LY LALHR L+ R Sbjct: 1177 IDLVFEHQGRYYLLDWKSNWLGPDDSAYSPEAMRAAIAERRYDLQYVLYLLALHRQLKAR 1236 Query: 1126 IADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 + DYDY+ H GG IY+FLRG + QG++ RP+ LI +D +FAG Sbjct: 1237 LPDYDYDRHLGGAIYVFLRG--GQAASQGLFMDRPDRALIETLDRLFAG 1283 >UniRef50_B0BTM4 Exodeoxyribonuclease V, beta subunit n=6 Tax=Pasteurellaceae RepID=B0BTM4_ACTPJ Length = 1202 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/1246 (36%), Positives = 636/1246 (51%), Gaps = 123/1246 (9%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 +TL P+ LPL LIEASAGTGKTFT+A LYLRLLLG+G ++ LTVE++LVVTFT Sbjct: 2 KTLSPIELPLNCTALIEASAGTGKTFTMANLYLRLLLGVGCAS-----LTVEQILVVTFT 56 Query: 66 EAATAELRGRIRSNIHELRIACLR--------ETTD-NPLYERLLEEIDDKAQAAQWLLL 116 +AAT ELR RIR NI AC R +T D N + +L ++I+ +A L + Sbjct: 57 KAATEELRDRIRRNIK----ACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRI 112 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 AER++D A++FTIH FCQ+ML AF+SGM F+ L DES L + + WR YP+ Sbjct: 113 AEREIDLASIFTIHSFCQKMLFQFAFDSGMRFDNDLQPDESDLLRRLSEEVWREMFYPMG 172 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET------LASRHAQIVARID 230 V E P I ++ E P + DE LA A + + Sbjct: 173 LTETAAVAEYLGTPNNAFAAIRAFVSAELPSL-----SDEQHWLNGELAVYLAALQHFLA 227 Query: 231 TVKQQWRDAVGELDALIES-----------SGIDRRKFNRSNQAKWIDKISAWAEEETNS 279 K+ W E+ LIES ++RR + KW + WA S Sbjct: 228 DAKRHWSAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRYLEKWRASVDEWAASSL-S 286 Query: 280 YQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE-----PLSIRDLVITRALAE 334 Y E E+F Q FL ++ + G E HP F Q+L + L++ + L Sbjct: 287 YLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQQFANKQKPLLLYQFLLA 346 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 +R +A K E F+DML+ L+ AL +E G LAA IR +FP AMIDEFQDTD +QY Sbjct: 347 VRTKLADYKATHSEKSFNDMLTLLNQALNAERGAELAAQIRAQFPFAMIDEFQDTDKEQY 406 Query: 395 RIFRRIWHHQPET--ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPG 452 IF +I+ + T ++IGDPKQ+IY FRGADIFTY+ A + TL NWRS P Sbjct: 407 EIFHKIFMQETHTNHGFIMIGDPKQSIYKFRGADIFTYLTASQQAQQKRTLAKNWRSLPP 466 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG 512 +V++ N+LF E P A +N F+++G +++ E E G Sbjct: 467 IVSATNRLF----------EFP-----EAAENSP--FLYQGIQFHSVEAKASEAELIG-A 508 Query: 513 DY----------QSTMAQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDISVLVR 559 DY + A+ CA QI+ L +AG+ G ++ +A DI++LVR Sbjct: 509 DYVNCYLQAKFDEKLAAKQCAYQIQQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVR 568 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 S +A ++ AL L I SV+LS ++SV+++ A+E+LW+L A + P + L SAL T+ Sbjct: 569 SHSQATLIKSALAELGIRSVFLSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTT 628 Query: 620 MMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA- 678 + GL+A +I L N E WD V F Y+QIW+++G++PML L I E L A Sbjct: 629 LWGLSATEIHQLKNSELQWDEQVGRFITYQQIWQQQGILPMLHKLFMQEGIIERLRANPR 688 Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 +RRLTD+LH++ELLQ A LE+E ALVRW + + + DS +RLES++ L++I Sbjct: 689 DSDRRLTDLLHLTELLQNAMPSLENESALVRWYERQLAKIDS-TEEHILRLESEEELIKI 747 Query: 739 VTIHKSKGLEYPLVWLPFI----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAER 794 VTIH SKGL+YP+VWLPFI + A Y D + + L + E Sbjct: 748 VTIHGSKGLQYPIVWLPFIGKKNQGAKASNLAIYRDEQGLAHWYFGKPSEQVQALMDREE 807 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 LAEDLRLLYVA+TR+ +L L +R D G VH LL GE + Sbjct: 808 LAEDLRLLYVAVTRAESQLNL---ILPQRFED--GWNAVH-----YLLSNGEIGLDKSYK 857 Query: 855 TCI---EALCDDDIAWQTAQTGD---NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 I E L I Q + + N W+ + L+A VTS+S Sbjct: 858 AEISTSEYLQQKGIDCQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSA 917 Query: 909 LQQR--------------------GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG 948 L Q+ G Q + L+ D E + +QFP Sbjct: 918 LHQQHEWAMQHHTGYSMPKAFESAGQDYDQQQVLTLETDNLFALDNEETNAYSSYQFPHS 977 Query: 949 ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVS 1008 G LHS FE DF Q VD + E G + W L +W VL P +ET + Sbjct: 978 TKVGNILHSFFEHSDFQQAVDFEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFA 1037 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 L + + E +FYL + +L+ L++Q+ +SA P L Q+ G L+GF+D Sbjct: 1038 LKDVPITKRLNEWQFYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDC 1097 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 + + ++YL+DYKSN+LG + Y++Q + + +RYDLQY LYTLALHRYLR R+ + Sbjct: 1098 IVQVNEKFYLIDYKSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHRYLRVRLGE 1157 Query: 1129 -YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 Y+YE FGGV YLFLRG++ G++ +P LI MDE+F Sbjct: 1158 QYEYERDFGGVAYLFLRGMNGTQ-NSGVFFEKPCKQLIEGMDELFG 1202 >UniRef50_A4JS84 DNA helicase/exodeoxyribonuclease V, beta subunit n=9 Tax=Proteobacteria RepID=A4JS84_BURVG Length = 1264 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/1265 (37%), Positives = 666/1265 (52%), Gaps = 115/1265 (9%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ + LDPLR PL G LIEASAGTGKTFTIA LY+RL+LG A PLT E+LV Sbjct: 11 TNAPQPLDPLRFPLSGRSLIEASAGTGKTFTIAMLYVRLVLGHEPPGARAEPLTPPEILV 70 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYE-----RLLEEIDDKAQAAQW--- 113 VTFT+AAT ELR RIR+ ++E AC + D + LL + + W Sbjct: 71 VTFTDAATKELRDRIRARLNEA-AACFQVEADAVTPQGAGETDLLHALRSDYPPSDWPAC 129 Query: 114 ---LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 L LA MD+AAV TIHG+C RML +AF+S LF Q L D++ L + D+WR Sbjct: 130 ARRLQLAAEWMDDAAVSTIHGWCNRMLREHAFDSDSLFSQALETDQTELLAEVVRDYWRT 189 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRH--AQIVAR 228 PL A V + GP AL + L + + A PD ASR+ A+ +A+ Sbjct: 190 FMTPLGAADAAAVAKWIPGPGALQAQLRNLLALASQLPAAAAPDATLAASRNERARSLAQ 249 Query: 229 IDTVKQQWRDAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY-QLPESL 286 + W D + LDA + R + + +WID + WA + ++ L Sbjct: 250 LKAPWHAWPDQMANVLDAARDDGHFRPRNLRKGDCDRWIDALRRWAGDSSSEEPSLMSGW 309 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR---EK 343 EK + L + + G P HP F A++ L E ++ + AR E+ Sbjct: 310 EKLTPDGLANACEPGAPVPAHPGFLALETLRVELAALPTAHAALLSHAAQWVAARFAAEQ 369 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 RR ++GFDD+L+RLD+ALR +GE LA IR +FPVA+IDEFQDTDP QYRIF ++ Sbjct: 370 ARRAQMGFDDLLTRLDAALRGPNGERLADVIRKQFPVALIDEFQDTDPVQYRIFDAVYRA 429 Query: 404 QPETA---LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNK 459 A L+LIGDPKQAIYAFRGADI TY+ AR +TL N+RS+ MV++ N Sbjct: 430 DTADAWRALILIGDPKQAIYAFRGADIHTYLAARRSCDGRLHTLAKNFRSSHAMVDATNH 489 Query: 460 LFS-----QTDDAFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLM----E 505 F+ + AF+FR +PF V + G+ + FV G PA+ W + + Sbjct: 490 CFAVAEARAGEGAFLFRRSGDNPVPFSTVSAQGRAEV--FVVNGAAPPALTAWWLPPADD 547 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 G+ Y ++A CA ++ L GQRG+ D +P+R +DI+VLV +R EA Sbjct: 548 GKPTTKTAYLESIAASCATEMVRLLNLGQRGDTGFAGKDGLQPLRPADIAVLVNNRGEAD 607 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 +R AL + SVYLS+R SVF+ +A E+ L A P+ +R+AL+T+ +GL Sbjct: 608 AIRGALAARNVRSVYLSDRSSVFQCAQAAELQHWLAACADPDDGRLVRTALSTATLGLGW 667 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-------- 677 +++ E AW+ V +F GY + WR++GV+PMLR ++ + LL T Sbjct: 668 AELDARFGSEIAWEACVLQFRGYHECWRRQGVLPMLRRFLNDFGVPARLLGTHADGRQGV 727 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLS-QHILEPDSNASSQ--QMRLESDKH 734 GGER LTD+LH++ELLQ+A ++ H +R+L+ Q DS+A S Q RLESD Sbjct: 728 PGGERILTDLLHLAELLQQASAMIDGLHGQIRYLADQRAASEDSDAGSDTVQTRLESDGD 787 Query: 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHSFEAVLDLNAAPESVDLA 790 LV+IVTIHKSKGLEYPLV+LPF R + +HD + E + L+ +++ Sbjct: 788 LVKIVTIHKSKGLEYPLVFLPFACAHRPAKATDLPLKWHDEND-ELRISLDGGRGALEQV 846 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA 850 + ERL EDLR LYVALTR+ +G+APL + ++A+G L+ +P Sbjct: 847 DRERLGEDLRKLYVALTRARHATWIGMAPL----------EALERTAIGYLIGGTQPLAG 896 Query: 851 AGLRTCIE---ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 GL ++ C++ IA A + + A+ R+ + W + SYS Sbjct: 897 GGLEDLLQTAFGACEN-IAVIPAPEPGGERYTPRIDEARRGAARQSARVVREPWWIASYS 955 Query: 908 GLQQRGHGIAQDLMPRL--------------DVDAAGVASVVEEPTL------TPHQFPR 947 L+ G + P DVD A + T H FPR Sbjct: 956 SLRTAGKNHREHAAPDTPGEDGFNEASAAERDVDQQPAAETPRHAPMPDANASTLHDFPR 1015 Query: 948 GASPGTFLHSLFE---DLDFTQ-PVDPNWVRE----KLELGGFESQWEPVLTEWITAVLQ 999 G+ G+FLH L E F + D +RE + + G++S +P LT+ + ++ Sbjct: 1016 GSEQGSFLHDLLEWAAAHGFARIAADREALREVVARRCSVRGWQSWIDP-LTDLVMQIVS 1074 Query: 1000 APL--------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI--RQFDPLSAG 1049 PL T + L+ L+ EMEF+ ++ + + LD L+ R D A Sbjct: 1075 TPLVLRGGHGIEPTSIELAALA--TAVGEMEFWF-AAKHVDTAALDRLVCARTLD--GAE 1129 Query: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 PPL+ + GMLKGF+DLVF HEGRYY+ DYKSNWLG D + YT + + A M RY+L Sbjct: 1130 RPPLDPATLNGMLKGFMDLVFEHEGRYYVADYKSNWLGADDTGYTAEKIRAQMLRSRYEL 1189 Query: 1110 QYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 QY LY LALHR L+ R+ DYDY+ H GG IYLFLRG++ P QGI+ +P LI +D Sbjct: 1190 QYVLYLLALHRLLKARLPDYDYDKHVGGAIYLFLRGLNA--PTQGIFAEKPPRELIERLD 1247 Query: 1170 EMFAG 1174 +FAG Sbjct: 1248 ALFAG 1252 >UniRef50_C0N789 Exodeoxyribonuclease V, beta subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N789_9GAMM Length = 1164 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1195 (36%), Positives = 648/1195 (54%), Gaps = 77/1195 (6%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D + L+G LIEASAGTGKTFT+A LY RL+ + L V+ +LVVT+T A Sbjct: 4 FDAANVELKGVNLIEASAGTGKTFTLAELYCRLIT--------EQQLEVKNILVVTYTRA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 AT ELRGR+R + E R + L+ +DDK + L LA + DEAA+F Sbjct: 56 ATEELRGRLRKRLVEERQKLSQ-----------LDAVDDKV--IKRLKLAIQSFDEAAIF 102 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR L AFESG F+ +++ DE ++ DFWRRH A+ + Sbjct: 103 TIHGFCQRALQDFAFESGHAFDVEMVTDEEEIKQAVVDDFWRRHVSAADANFARFLLAQK 162 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 + P+ LL+ + L G+ + P P+ + + +Q A ++KQ W + ++ A++ Sbjct: 163 QTPETLLKAVGN-LPGKPYLTYLPLPEVD-IEKAQSQAEADFVSLKQCWLNYQADIIAVV 220 Query: 248 -ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 ++S + K+ A W+ + ++ET Q+ E L++F++ LE K G P Sbjct: 221 TDNSLLFANKYRSDWVANWLLMLENLLQQETLPQQVFEQLDRFTRERLEPALKKGKTLPD 280 Query: 307 HPLFEAIDQLLAEPLSI---RDLVITRALAEI----RETVAREKRRRGELGFDDMLSRLD 359 HP + ++ L + RD+ + + ++ R+ + + K++ FDD+L L Sbjct: 281 HPFWSHAERFLQSHQQLNQCRDIALQQLRMQLANYLRQELPKRKQKLKLQAFDDLLLNLQ 340 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL SE G+VL A IR +F A+IDEFQDTDP QY FR ++ + + +GDPKQAI Sbjct: 341 QALHSEQGDVLVAQIRQQFQAALIDEFQDTDPIQYDCFRTVFADSG-SPVFFVGDPKQAI 399 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 Y+FRGADIFTY+ A+ + LDTNWRS P +V +VN LF Q + F++ +IPF PVK Sbjct: 400 YSFRGADIFTYLDAKQASQREFNLDTNWRSHPLLVGAVNTLFEQVEKPFIYDDIPFYPVK 459 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEG--ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 +A + + K P +W+ + ++ GD +T A A+QI D +Q +GE Sbjct: 460 AARPDTPALTLSKQALPPLEFVWVADDGDKAINKGDMLTTAANSTASQIADLMQQSSQGE 519 Query: 538 ALLMNGD-DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 L + + D+R + DI+VLVRS +A ++ AL I SV S RD+VF++ +A + Sbjct: 520 VTLTDKEGDSRALNGGDIAVLVRSHSQATAIQQALRQRGINSVQQS-RDNVFKSEQAVML 578 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRG 656 +L AV P + + +ALAT + ALDI L D+ W + F W++ G Sbjct: 579 EQVLLAVAKPGNNSLIATALATPIFAKTALDIYQLQQDDSLWLEQTDLFQSLHDSWQQDG 638 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE-HALVRWLSQHI 715 + M R LM +I +L + GER+LT+++H++EL+Q ++ S A++ WL+ Sbjct: 639 FIVMFRRLMEQLDIQRRILQQSDGERQLTNLMHLAELVQAYASRRNSTIEAILTWLAGQR 698 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDR 771 + Q+RLESD+ LV+++TIH SKGLEYP+V+ PF+ + +Q F+H Sbjct: 699 QASSAAQDMAQIRLESDEQLVKVITIHTSKGLEYPIVFCPFLWHQGKPKQKPELMFFHRD 758 Query: 772 HSFEAVLDLN--AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 + +A + E+ +AEAE AEDLRLLYVALTR+ C V G K Sbjct: 759 ETNQACVAFGEPGFSEAEPIAEAESRAEDLRLLYVALTRARERC-------VIIWGAAKN 811 Query: 830 DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGD----NQPWQVNDVST 885 D + G L + + + A + + + L + + QT + N P V + Sbjct: 812 CEDT--AMFGLLHRDLDTLNPAQMHSDLAELSAEHPKFIRLQTVNEEVENAP--VKPATE 867 Query: 886 AELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ- 944 L+A+ + W+++S+SGL RGH + Q D DA V S + P T H Sbjct: 868 VALSAREFKGRILPPWQISSFSGLT-RGHHVEQP-----DYDADSVLSEWQTPVETRHDR 921 Query: 945 --FPRGASPGTFLHSLFEDLDFTQPVDPNW---VREKLELGGFESQWEPVLTEWITAVLQ 999 FP+GA+ GT LHSLFE DF Q W +++ L G ++ W V+ W+ +V+ Sbjct: 922 FGFPKGANAGTCLHSLFEHWDF-QTTGDEWQQLIQKTLSQYGIDTDWTDVVEHWLPSVVS 980 Query: 1000 APLN-ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF----DPLSAGCPPLE 1054 +PL+ E+ ++L+ +S + EM FY P+S+ L A +L T + F L L Sbjct: 981 SPLSTESALTLNCISQDKRLDEMAFYFPVSQ-LKAQKLKTTLTGFVTEMPVLKTVLNQLN 1039 Query: 1055 FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 F V G +KGFIDL+F EGR+Y+ DYKSNWLG+ + Y + A+ AM H Y LQY +Y Sbjct: 1040 FNDVTGFMKGFIDLIFEFEGRFYIADYKSNWLGDKAEDYDKVALDEAMVTHGYPLQYLIY 1099 Query: 1115 TLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 +LALHRYL+ R+ DYD E HFGGV YLF+RG+ E Q G+Y +P+A L+ +D Sbjct: 1100 SLALHRYLKIRLPDYDPEQHFGGVYYLFIRGMQAEWGQAGVYFDKPSAALLDALD 1154 >UniRef50_B5JRL3 Exodeoxyribonuclease V, beta subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL3_9GAMM Length = 1215 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/1250 (36%), Positives = 660/1250 (52%), Gaps = 133/1250 (10%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSA----AFPRPLTVEELLVVTFTE 66 + PL G RLIEASAGTGKTFT+A LYLRL+LG G S + L +++LV+TFTE Sbjct: 1 MTFPLHGRRLIEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTE 60 Query: 67 AATAELRGRIRSNIHELRIACLRETTD--NPLYERLLEEIDDK--AQAAQWLLLAERQMD 122 AAT ELR RIR + E A D +PL LL + D+ ++ A L A + MD Sbjct: 61 AATQELRERIRERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQHSRCAHLLNAAAQDMD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA+ TIHGFCQRML +AF+S LF L EDE L + D+WR PL + + Sbjct: 121 EAAITTIHGFCQRMLREHAFDSRSLFNLSLQEDEKTLTDDSFLDYWRSFALPLEGDAFKE 180 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDD---------ETLASRHAQIVA-RIDTV 232 + P AL L+ V PPP D ++ RH ++ Sbjct: 181 FELNYSTPSALQAAAKNPLKW---VELLPPPIDSDDYTAHLAKSYKKRHQALMKWHQRWH 237 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 K W +A+ E ++S ++ +K+ +W ++ W + + +L + S Sbjct: 238 KNHWMEALREHFPEWKTS-LNGQKYQEKTVNQWFAELERWLADPEHPLKLEKGWTNLSPE 296 Query: 293 FLEDRTKAGGETPRHPLFEAI---DQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEL 349 L + TK G P H LFE+I + L A D + A + E +A K+RR + Sbjct: 297 GLAENTKKNGTPPEHELFESIPALEALFATLDENADTIALHAAHWVAERIATHKQRRSLI 356 Query: 350 GFDDMLSRLDSALRS--ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE- 406 GFDDM+S+L AL + S LA IR ++P+A++DEFQDTDP+Q+RIF+R++ PE Sbjct: 357 GFDDMISQLAEALDTPDASDTALAQRIRQQYPIALVDEFQDTDPKQWRIFQRLY---PEI 413 Query: 407 ----TALLLIGDPKQAIYAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKL 460 AL++IGDPKQAIY FRGADI+TY+ AR + YTL N+RS+ MV +VN + Sbjct: 414 ETRQNALVMIGDPKQAIYQFRGADIYTYLDARRSIDDTRRYTLPCNYRSSEPMVAAVNHV 473 Query: 461 FSQTDD----AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE-SCGVGDYQ 515 F+Q + AFM +IPF V++ G+ + RFV + A+ +W + + + G Y Sbjct: 474 FNQGNQHKSGAFMEADIPFEAVQANGRKE--RFVVMEKEHCALTLWYRDSDVAVGKNQYL 531 Query: 516 STMAQVCAAQIRDWLQ-AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 A A++I L A R + + SDI++LVRS EA +RDAL Sbjct: 532 QQSAADTASEIVRLLNLARDRRAGFINEAGQFTALAPSDIAILVRSGSEAQVMRDALAER 591 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 ++ S YLSN++SVF++ EA+++L L+A P + +R+AL T + L D++ LN+D Sbjct: 592 QLRSAYLSNKESVFDSPEARDVLHWLRACHEPRNDRHMRAALGTITLDLPWADLDALNHD 651 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 E +W+ E+F Y Q+W++ GV+ ++ L+ ++A A ER L++IL ++ELL Sbjct: 652 EASWNRRYEQFAEYHQLWQRSGVLAVIYHLVWDFHLA----ARQNAERSLSNILQLAELL 707 Query: 695 QEAGTQLESEHALVRWLSQHILEP-DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 Q A Q++ E L+RWL +HI E D+++ Q +RLESD L++IVT+HKSKGLEYPLV+ Sbjct: 708 QSASGQVDGEAGLLRWLEEHITEERDASSDEQVLRLESDDELIKIVTLHKSKGLEYPLVF 767 Query: 754 LPFITNFR-VQEQAFYHDRHSFEAVLDLNAAPESV--------DLAEAERLAEDLRLLYV 804 +PF FR + F H+ E L L + E + + + ERLAEDLRLLYV Sbjct: 768 MPFCATFRPANAKDFPQAYHNGEGQLQLALSAEEIVSDSTTALEQCDRERLAEDLRLLYV 827 Query: 805 ALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD 864 +TR LG+AP R K + + QS G LL L DD Sbjct: 828 GMTRPRHALWLGLAPTTLGRAHK---SKIGQSVWGHLLN----------------LPADD 868 Query: 865 IAWQTAQTGDNQPWQV-------NDVSTAELNA---------------KTLQRLPGDNWR 902 I +T Q P+Q ST ELN+ + QR W Sbjct: 869 IDKKTFQEVIKAPFQALAEGAPSVQFSTPELNSEPYLGHLDATPLGQPRECQRAQPPRWW 928 Query: 903 VTSYSGLQQRGHGIAQ---DLMPRLDVDAAGVASVVEEPTLTP-HQFPRGASPGTFLHSL 958 + SYS L + IA+ RL + + E P+ H FPRGA PG FLH Sbjct: 929 MASYSALLRGADPIAETASGFDERLADEGERRKASTELPSPEGLHPFPRGAMPGDFLHRQ 988 Query: 959 FEDLDFTQPVDPNWVREKLELGGFESQ------------WEPVLTEWITAVLQAPL---N 1003 E + + ++ R + L F+S+ W+ L + + ++Q L + Sbjct: 989 LELMG-----EAHFERAEQRLAEFKSELLPKLQLRQWEHWQDRLPQALLGIVQQALPLPD 1043 Query: 1004 ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLK 1063 V+L+ L EMEF+ + ++ +D LI DP +G P + G+LK Sbjct: 1044 NQRVALADLKPAQYHTEMEFHF-AAHGCRSTDIDRLIGH-DP--SGLKP---QSLNGLLK 1096 Query: 1064 GFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 GFIDLVF HEGRYY+LDYKSN+LG D SAYTQ AMA +++ HRYDLQY LY+LALHR L+ Sbjct: 1097 GFIDLVFEHEGRYYVLDYKSNYLGPDDSAYTQDAMAESVREHRYDLQYALYSLALHRLLK 1156 Query: 1124 HRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 R+ +YDY+ HFGG IY FLRG E +G+++ R + +D +F+ Sbjct: 1157 QRLPNYDYDKHFGGAIYYFLRGYQSE--SRGVFSVRLELNTLDALDALFS 1204 >UniRef50_Q0I3D6 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Histophilus somni RepID=Q0I3D6_HAES1 Length = 1216 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1238 (32%), Positives = 659/1238 (53%), Gaps = 109/1238 (8%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V + +P+ PL LIEASAGTGKT +I +LY+RLLL G F + L V+++LVVT Sbjct: 19 VFQPFNPISTPLSAVSLIEASAGTGKTHSIVSLYIRLLLQ-AGENNFSQALEVDQILVVT 77 Query: 64 FTEAATAELRGRIRSNIHELRIACL-------RETTDNPLYERLLEEIDDKAQAAQWLLL 116 +TE AT EL+ RIR I++ + A + + ++ + LL I D A L L Sbjct: 78 YTEMATQELKQRIRERIYQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTL 137 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 AER +D +AV TIH FC+R+L AF SG+ F +L+ DES L + + WR + Y P Sbjct: 138 AERNLDISAVSTIHSFCRRVLMQYAFNSGVHFNMELVSDESELIQRLANELWRENFYHQP 197 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR---HAQI---VARID 230 +A +F+ P+ L+ + +YL + P + P ++ + H Q+ +++I Sbjct: 198 LSVANFIFKKLGSPKQLVSYVYKYL-SQPPKVNTQKPHLLEISLQQFLHTQVEPQLSKIH 256 Query: 231 TVKQQW---RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 KQ+W A+ EL AL +K+ + +K+ WAE E Q PE+ + Sbjct: 257 QFKQRWLENEKALRELVAL--------KKWRKDWFESRFNKMRVWAENE--DIQQPEAAK 306 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS-IRD---LVITRALAEIRETVAREK 343 F Q L+ + H LF ++ L+ ++ I + +++ + E+ + K Sbjct: 307 YFYQLELDKKEPLVS----HDLFSELENLVTNEVTQISNNFSVLLYHCVHELNRKIMDYK 362 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 + GFDD+L + +AL G+ LA IR ++P AMIDEFQDTD QQY IF +I+ Sbjct: 363 LTHQQKGFDDLLRLVRNALYQPQGDKLAQLIRHQYPFAMIDEFQDTDQQQYDIFYQIYIK 422 Query: 404 Q--PETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLF 461 T ++IGDPKQ+IY FRGADIFTY+KA + ++L NWRS ++ ++N LF Sbjct: 423 SAVKNTGFIMIGDPKQSIYKFRGADIFTYLKATEQAQYRFSLGENWRSTQPLIQTINYLF 482 Query: 462 S-QTDDAFMFREIPFIPV------KSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY 514 Q + F+ ++IPF V + G RF G +PA++ +L + Sbjct: 483 DFQENSPFLHKKIPFQQVAKGLYYDTQGNLLPNRFCLNGRIEPALRGYLTDNND------ 536 Query: 515 QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 + +A+ CA I WLQ+ + +A+L D +P++A +I+VLV S +A +++ AL Sbjct: 537 -TQLAENCALSIEQWLQSAVQNQAIL----DNKPLKAKNIAVLVSSFTQAEKIQKALRDK 591 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 I SVYLS+R +VF+++ A+E+L +L+A + P EN + +AL+T++ +I + D Sbjct: 592 GIASVYLSDRSNVFDSITAKELLHILRACLNPLNENNILNALSTALFAKTGAEIFQIKQD 651 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 E+ W+ VE F Y+Q W+++G++PML L + I ENL GER++TD+ H+SELL Sbjct: 652 ENLWENCVERFIAYQQQWQRQGILPMLHHLFAVEKINENLQMMEQGERKMTDLWHLSELL 711 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 Q+A ++E +LVRW + I +Q+RLESD+ LV+IVT+HKSKGL Y LVW+ Sbjct: 712 QQATRLNDTESSLVRWFEKQI--QGEERLEEQIRLESDRELVKIVTLHKSKGLAYDLVWI 769 Query: 755 PFITN---FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 PFI FR Y+D + + + D++ + D E ER+AED+RLLYVALTR+ + Sbjct: 770 PFICKPSLFRDNAINTYYDENQEQVLWDMDK--QHSDEIEKERMAEDIRLLYVALTRAKY 827 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 + + R +KK + ++ G++ D + + + +++ Q + Sbjct: 828 QIVINLP----RVFEKKWNALLYVLTKGQIGVNKRIDDEYDAKKLLSPII-EELGEQCVE 882 Query: 872 TGDNQPWQV--NDVSTAE-----LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 924 +++ V N+ T + + A+ NW VTS++ + R H + L R Sbjct: 883 IEEDKKLLVRRNEYITVQQALSPVEAEEFHGKIERNWTVTSFTEMTYR-HQRNRSLNSRQ 941 Query: 925 DVDAAGVASVVEEPT----------------------------LTPHQFPRGASPGTFLH 956 ++ V ++ +P FP G G+ H Sbjct: 942 KAQQIEISGVFDQARDYDVKENGHDMSASFDMKLSADSDYPVGFSPFDFPHGVHVGSEFH 1001 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--TGVSLSQLSA 1014 FE + TQ ++ + + + + +W+ L +WI + PL + G +L + + Sbjct: 1002 RYFEKYNMTQALNDDQLSKLCQTLQLSDEWQNPLKKWINTIFNTPLKQDIAGFTLGNIKS 1061 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 ++ EM+FYL +++ + + L+ ++ L + P+ +++GM++GFIDLV R EG Sbjct: 1062 QDCLKEMQFYLKLNQSFNENVFNRLLSKYHHLPSS--PILMDRIKGMVRGFIDLVVRFEG 1119 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHH 1134 +YYLLDYKSN LG S Y Q + M + YD QY +YT+ALHRYL+ R +YDY+ Sbjct: 1120 KYYLLDYKSNLLGYSSQHYQQDNLIQVMCNNHYDWQYLIYTIALHRYLKERDKNYDYQRD 1179 Query: 1135 FGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 FGGV+Y FLRG++ + GI+ +P+ LI+ ++ +F Sbjct: 1180 FGGVLYTFLRGMNGK-DNSGIFFDKPDWRLISELESLF 1216 >UniRef50_A7JVG0 Exodeoxyribonuclease V n=3 Tax=Mannheimia haemolytica RepID=A7JVG0_PASHA Length = 1174 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1217 (35%), Positives = 628/1217 (51%), Gaps = 93/1217 (7%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P++LPL LIEASAGTGKTFTIA LYLRLLLG+G + PLTVE++LVVTFT Sbjct: 2 KNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCN-----PLTVEQILVVTFT 56 Query: 66 EAATAELRGRIRSNIHE-----------LRIACLRETTDN-PLYERLLEEIDDKAQAAQW 113 +AAT EL+ RIR NI + L + + +N ++ I + +A Sbjct: 57 KAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLR 116 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +AER++D A+VFTIHGFCQ+ML AFESG+ F+ L ++S L + + WR Y Sbjct: 117 LSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEEVWREQFY 176 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 P I V E P+ L + RYL E P A D +A AQ I+ VK Sbjct: 177 PQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD--IAEHLAQYQQFINEVK 234 Query: 234 QQWRDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWAEEETNSYQLPES 285 W+ D L+E+ D + + + ++ ++ WA + N + P Sbjct: 235 SYWKTHS---DELVETIRHDLKHKITLHGGWYRATTFEAGVEVMNQWANSQHNHF--PAG 289 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE-----PLSIRDLVITRALAEIRETVA 340 L F+ + TK E P L S+ ++ + L ++ +A Sbjct: 290 LYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSAMLQYQFLIALKAKLA 349 Query: 341 REKRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 K+ + FDD+L+ L+ AL++ +GE L+ IR +P AMIDEFQDTD QY IF + Sbjct: 350 EYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAMIDEFQDTDLTQYEIFSQ 409 Query: 400 IWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVN 458 I+ E ++IGDPKQ+IY FRGADIFTY++A + +TL NWRS P +V +VN Sbjct: 410 IFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVN 469 Query: 459 KLFSQTDD--AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 LFS +D F++ +I F PV++ + L Q ++ E Sbjct: 470 NLFSFANDNSPFLYEDIGFHPVEADSQKGQLV-----SEQGHFVGYITENSKL------D 518 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 +A++CA QI L+A +G+ + + + A DI++LVR +A +++ AL I Sbjct: 519 DLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQAKRIKKALAKRNI 578 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 SVYL+ SVF + A E+ WLLQA + P L SAL +++ GL A +I +E Sbjct: 579 KSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWGLTAAEIHRYKENEQ 638 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 WD+ V +F Y IW+++GV+PML + + I E L +R +TD+LH++E+LQE Sbjct: 639 LWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENADRLITDLLHLTEILQE 698 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 LESE L+RW + + PD N QQ+RLES++ L++IVTIH SKGL+YP+VWLPF Sbjct: 699 TSQALESEAELLRWYEKQVNSPDFN-DEQQLRLESEEELIKIVTIHGSKGLQYPIVWLPF 757 Query: 757 ITNFRV--QEQAFYHDRHSFEAVLDLNAAPESVDLA-EAERLAEDLRLLYVALTRSVWHC 813 ++ + A R+S + LD E + + E AEDLRLLYVALTR+ Sbjct: 758 VSQKSEGDTQTALSLYRNS-QGALDWCLGSEEASFSLQYEAYAEDLRLLYVALTRAESQL 816 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 873 +L V P + G + +H LL GE G + IA + Sbjct: 817 NL-VLP-----KEISGWSPLH-----YLLADGEI--PTGKVPVSDYFSQKRIAANLVEVA 863 Query: 874 DNQPWQV--NDVSTAELNAKTLQ---RLPGDNWRVTSYSGL-----------QQRGHGIA 917 P+ + + S+ + AKT R+ G ++TS++ L +R +A Sbjct: 864 GELPFSLWEGEQSSDDYQAKTFSGNIRVVG---QITSFTSLYAQHERFSEGKSERVMDLA 920 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKL 977 QD ++ AG +S E +P QFP G GT LH FE F + +D V + Sbjct: 921 QDRDVHIETIEAGYSS--ETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDREAVAKVC 978 Query: 978 ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 E G +W W +L PL E L + + E +FYL + QL+ Sbjct: 979 EQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKNDKALHQLN 1038 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 L++Q PL+ P L+ Q+ G ++GF+D + + E ++YL+DYKSN+LG Y ++ Sbjct: 1039 ALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLGYLPQNYAKEH 1098 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIY 1156 + M RYDLQY LYTLALHRYL R+ + YDYE FGGV YLFLR ++ E+ G+Y Sbjct: 1099 IQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLRAMNGEN-DNGVY 1157 Query: 1157 TTRPNAGLIALMDEMFA 1173 +P LI MD +F Sbjct: 1158 FDKPTKQLIEEMDRLFG 1174 >UniRef50_Q2SQD6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD6_HAHCH Length = 1181 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/1226 (37%), Positives = 646/1226 (52%), Gaps = 110/1226 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LDP+ +PLQG +LIEASAGTGKT+TI LYLRLLL R L V ++LVVTFT A Sbjct: 4 LDPIAIPLQGVQLIEASAGTGKTYTITTLYLRLLL--------ERQLDVRQILVVTFTRA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQMDEAA 125 AT ELR RIR I E+ + L+ + + E L + + A L A MDEA+ Sbjct: 56 ATEELRTRIRQRIREV-MQTLQAPPETDIAEWLQPWRDPERNGDALALLQQALLNMDEAS 114 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQR L NAFESG+LF+ +L ED L QA D WR+ YP R +A++ Sbjct: 115 IFTIHGFCQRALQDNAFESGLLFDLRLQEDLGPLLQQAAEDTWRKLFYP-DRLLAELAQA 173 Query: 186 TWKGPQALLRDINRYL-QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 W P +L + YL QG+ +I+ PD + A H +K QWR +L Sbjct: 174 KWGEPADMLNGLRSYLAQGDLELIR---PDVDPQALSHL-----AGALKAQWRQQGDDLT 225 Query: 245 ALIESSGIDRRKFNRSNQAKWIDKI-------SAWAEEETNSYQLPESLEKFSQRFLE-- 295 A + + + + R+ + DK+ + W+ E LP + FSQ L+ Sbjct: 226 AAVREAA-ENKILGRAEKTYREDKLNDAILSLTIWSRTE-EQMTLPPAAALFSQSVLDAS 283 Query: 296 ---DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 G P+H F A+DQ L + + ++ L ++ + R K + LGFD Sbjct: 284 VLKKAADKGLGAPQHAFFTALDQFLTQQTQLDAWLVGATLTAFKDVLQRLKTQAEILGFD 343 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-LLL 411 D++ L AL + +G L A++ R+PVA+IDEFQDTDP QYRIF ++ A L + Sbjct: 344 DLIGSLKDALAAATGPQLRQALQRRYPVALIDEFQDTDPSQYRIFSSLYDAADGNATLFM 403 Query: 412 IGDPKQAIYAFRGADIFTYMKA--RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 IGDPKQAIY+FRGADI+ Y++A R+ YT+DTNWRS +V +VN LF Q + F+ Sbjct: 404 IGDPKQAIYSFRGADIYAYLQAKQRTPQDNRYTMDTNWRSRKELVAAVNGLFEQCANPFL 463 Query: 470 FR-EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME----GESCGVGDYQSTMAQVCAA 524 F +I FIPV++AG A ++ WL+ G++ + +AQ+ A+ Sbjct: 464 FAGDIEFIPVQAAGAADASVLTLDDVPVTPLQAWLLGREDGGKTISKDQARPQLAQITAS 523 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 +I +WL G+ G A L RP+ A DI+VLVR ++A + + L+ + + SV+L+ R Sbjct: 524 EIANWLNLGECGRARLGE----RPLSAGDIAVLVRDNKQARIMSEKLSAVGVSSVFLT-R 578 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 +SV+++ EA ++L LL+A++ P E LR+AL T G A ++ETL DE W+ ++ Sbjct: 579 ESVYQSEEATDLLRLLRALLEPNDERRLRAALVTLSWGWTAAELETLARDEQRWENMLTS 638 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE 704 R+ W+ G MPM + + ++A LL GERRLT++L ++ELLQ+AG + Sbjct: 639 LHQLREEWQDAGFMPMFQKWLQNFSVAARLLGLPEGERRLTNLLQLAELLQQAGRDYPTP 698 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 L+ W + + D Q+RLESD+ LV+IVTIH SKGLEYPLV+LPF+ R + Sbjct: 699 ERLLAWYQGQLEQADGRGDEHQLRLESDEALVKIVTIHSSKGLEYPLVFLPFLGFGRSGK 758 Query: 765 QAFY--HD-RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 + HD VLDL+ + AE ERLAEDLRLLYVALTR+ C + Sbjct: 759 DDYLMCHDPEREHRLVLDLSGGDRLREQAERERLAEDLRLLYVALTRAKQLCVWAWGAV- 817 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA-------------WQ 868 + +A+ LL G T ++ L D +A W Sbjct: 818 ---------NEFQYAAMAWLLYGGATGSLTDWLTSLKNLDDTQLAEPLTRLAAQTDFYWS 868 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHG-----------IA 917 A +Q Q + + A++ QR NWR++SYS L G G Sbjct: 869 PAPEPVHQRHQPGE-GAGQWRARSAQRTVEQNWRLSSYSQLAAGGGGRHSEEPLDEAEAT 927 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF---TQPVDPNWVR 974 ++ PRL D + + QFP+GA G H + E++ F + + Sbjct: 928 LEVQPRLQPDVSDI-----------FQFPKGAWAGQCFHHILENMPFQAESAEILHELTS 976 Query: 975 EKLELGGFESQWEPVLTEWITAVLQAPLNETGV---SLSQLSARNKQVEMEFYLPISEPL 1031 L+ GF +W + E + V+ PL + GV SLSQL N QVEMEF P++ L Sbjct: 977 HSLQQHGFGEEWVACVAEQLWQVVNTPLRQNGVTPFSLSQLDKANMQVEMEFLFPVT--L 1034 Query: 1032 IASQLDTLIRQFDPLSAGCPP--LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 I Q L R S P L G++ GFIDL F+HEGR+Y+ DYK +WLGE Sbjct: 1035 I--QQARLARFLADYSGSEAPVNLNVAANEGLMHGFIDLTFQHEGRFYIADYKGSWLGEK 1092 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV-DK 1148 +Y + + AHRYDLQY +YTLALHRYL+ + YDYE HFGGV YLFLRG+ + Sbjct: 1093 RESYAPDNLRNEILAHRYDLQYLIYTLALHRYLQRSLPAYDYETHFGGVYYLFLRGMHSQ 1152 Query: 1149 EHPQQGIYTTRPNAGLIALMDEMFAG 1174 + P+ G++ RP+ +A E+ G Sbjct: 1153 QQPELGVFFDRPSREAVAAFAEILQG 1178 >UniRef50_Q5QUQ8 ATP-dependent exoDNAse (Exonuclease V) beta subunit n=2 Tax=Idiomarina RepID=Q5QUQ8_IDILO Length = 1241 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/1259 (37%), Positives = 661/1259 (52%), Gaps = 128/1259 (10%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG-----SAAFPRPLTVEELLVVT 63 +PL PL RLIEASAGTGKT+TIAALY+RL++G G AF R L + +LV+T Sbjct: 19 NPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGAEETAFDRELVPKNILVMT 78 Query: 64 FTEAATAELRGRIRSNIHELRIACLRE---TTDNPLYERLLEEIDDKAQA----AQWLLL 116 FT+AAT EL RIR+ + E A R+ +P L E+ + Q A+ L L Sbjct: 79 FTKAATEELSDRIRARLAEA-AAYFRDPEAVEGDPFLASLREDCAAQGQNLMHLARLLDL 137 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A + MDEAAV TIHG+CQ ML +AF SG LF Q + D LR QA D++RR YP Sbjct: 138 ASQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEELRLQAAGDYFRRFIYPAD 197 Query: 177 REIAQVVFETWKGPQALLR-DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 E++ + E +K P+ LL + G+AP+ S H Q R+ +KQ+ Sbjct: 198 AELSARLLEDFKSPETLLGLTYSLSKSGQAPIDGDLHSLLNEAESAHQQ---RMVAIKQE 254 Query: 236 WRDAVGEL-DALIESSGIDRRKFNRSNQAKWI---DKISAWAEEETNSYQLPESLEKFSQ 291 V EL D ++ G + A W D + A + L+KF+ Sbjct: 255 VAPIVQELVDKTSQAKGAATKLKQFQKFADWCGDPDLVEPEATAANWKNISTDELQKFAD 314 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA--------REK 343 L D P A+ L E + + LA++++ A + Sbjct: 315 AKLGDM----------PQSWAVLGELQERIKRSKVQQQEELAKVKQHAAFWVSNRFAELQ 364 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH- 402 +R E+G DDML+RL AL+ SGE LAAAIR ++PVAM+DEFQDTDP QY IF RI++ Sbjct: 365 NQRAEMGHDDMLTRLRDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIYNL 424 Query: 403 --HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNK 459 P T + LIGDPKQAIY+FR ADI+TY+KAR + HY L N+RS+ MV+ VN Sbjct: 425 ADPHPGTGIFLIGDPKQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVDGVNA 484 Query: 460 LFSQTDD----AFMFR-----EIPFIPVKSAGKNQALRFVFKG---ETQPAMKMWLMEGE 507 LF + ++ AF+F+ ++PF PV + G + + +T PA+ +W + GE Sbjct: 485 LFERAEELPRGAFLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPAL-LWSVSGE 543 Query: 508 SCGVGD-YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA--RPVRASDISVLVRSRQEA 564 D + A A I L Q G +GDD + V+ SDI+VLV + EA Sbjct: 544 EKRNKDTFFRAAANHHANLIASLLNDPQAG---YYDGDDKLEQRVKTSDIAVLVNNFNEA 600 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 ++ AL+ + SVYLS+R+SVF A+++L L+ A P + +RSALAT ++GL Sbjct: 601 NAIKKALSDRGLKSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQILGLP 660 Query: 625 ALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-AGGERR 683 ++E +++ E W+ VE+F Y W+++GV+ ML +L+ + LL GER+ Sbjct: 661 LSELEHIHSHEREWEQRVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLEDRIHGERQ 720 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASS-------QQMRLESDKHLV 736 L+D+LHI+ELLQ+ L+ ALV ++ + E S+ QQ+RLESD L+ Sbjct: 721 LSDVLHIAELLQQQSLVLDGIPALVNHFAEQVNERHGFGSNSRTQSDEQQLRLESDDELI 780 Query: 737 QIVTIHKSKGLEYPLVWLPFIT-----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE 791 +I+TIHKSKGL+YPLV++PF+ +R++ A YHD + VL + ++ Sbjct: 781 KIITIHKSKGLQYPLVFMPFVAYTQAEAYRIKPPAVYHDENGELQVL-WSKDDDNKQRLS 839 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA 851 E LAEDLR +YVA+TR+ + + + + R + L LL GE Sbjct: 840 NEILAEDLRKMYVAVTRAQYATFIALEAVKEHRNN----------PLFYLLNGGE----- 884 Query: 852 GLRTCIEALCDDDIAWQTA------QTGDNQPWQVNDVSTAELNAK-TLQRLPGDN---- 900 E + + WQ A + D++P V + + K T + +P D Sbjct: 885 --SLTDELYTEVNERWQQAPHTQLTRLEDDEPL-VRALEQEQTTPKLTPRSMPADRKLER 941 Query: 901 WRVTSYSGLQQRGHGIAQ----------DLMPRLDVDAAGVASVVEEPTLTPHQFPRGAS 950 W V SYS L+ G +L+ D D A VAS E + H P+GA Sbjct: 942 WWVASYSALKYEGAVTKSVQAPQSPDEMNLLDERDDDEAEVASAAEPSPDSIHHLPKGAG 1001 Query: 951 PGTFLHSLFE---DLDFTQPVDPNWVREKLELGGFESQW----EPVLTEWITAVL--QAP 1001 PGTFLH+L E ++ F Q R +L G S + + L W+ A L + P Sbjct: 1002 PGTFLHNLLEESANIGFAQIAGDAAERAELVQGFCVSPYWQEHQNSLEHWLDAYLHNEFP 1061 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 +N++G S+S + + E EF+ SE + A +LD L+R+ P LE + GM Sbjct: 1062 INDSGESVSLSALEQYKAEPEFWFGASE-VNAQRLDALVREHILPGHERPALEPNVLNGM 1120 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 LKGFIDLVF H G+YY+ DYKSNWLGED AYT+QAM + RYDLQY +YTLALHR Sbjct: 1121 LKGFIDLVFEHNGKYYVADYKSNWLGEDDHAYTEQAMREKILHSRYDLQYVIYTLALHRL 1180 Query: 1122 LRHRI-ADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 L+ R+ +DYDY+ H GG +YLFLRG E G + RP LI +D +FAG L + Sbjct: 1181 LKARLGSDYDYDTHVGGAVYLFLRGHRAE--TGGAFCDRPPRKLIEQLDTLFAGKNLSD 1237 >UniRef50_A9BRA9 Exodeoxyribonuclease V, beta subunit n=4 Tax=Comamonadaceae RepID=A9BRA9_DELAS Length = 1274 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 487/1275 (38%), Positives = 664/1275 (52%), Gaps = 126/1275 (9%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-------GSAAFPRPLTV 56 + LD R PL G RLIEASAGTGKT+TIAALYLRL+LG G S AF RPL Sbjct: 11 TSHVLDAQRFPLWGSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMP 70 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD-------KAQ 109 ++LV+TFT AAT EL RIR + E + C R + ++ L + + + + Sbjct: 71 PDILVMTFTRAATRELSDRIRKRLIEA-VQCFRGEAEPAPHDAFLHALREAYPEGAARER 129 Query: 110 AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 AA L +A MD+AA+ TI +CQRML +AF+SG LF++ L DES + +A D+WR Sbjct: 130 AAWRLAMAAECMDDAAIHTIDAWCQRMLREHAFDSGNLFDETLEPDESQRQTEAAQDYWR 189 Query: 170 RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD-DETLASRHAQIVAR 228 + CYPL E+ V + W AL+ D+ R L E PV A + L Q +R Sbjct: 190 QQCYPLSDELLDEVLKIWPHVGALVDDM-RALLREPPVPGAGEGSLADCLQRAMEQRRSR 248 Query: 229 IDTVKQQWRDAVGEL----DALIESSGI--DRRKFNRSNQAKWIDKISAWAEEETNS-YQ 281 + + W D L D ++ G D+RK + W+ ++ W+ + Sbjct: 249 LLALAAGWDDKAQRLQLWLDGQLDGHGALWDKRKLQPARYTGWLAALADWSRAPLDGPLA 308 Query: 282 LPESL-EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE------PLSIRDLVITRALAE 334 L E+ + S L + K PL A Q L P+S+ V A A Sbjct: 309 LTEAARHRLSPEGLAEAFKGSAGDVLMPLELAELQALLLQLEQLPPVSV--AVRLHAAAR 366 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 + + +A KR+ G GF DML RLD+AL ++G VL I ++PVA+IDEFQDT P QY Sbjct: 367 VAQRLAHLKRQAGSFGFADMLQRLDTALAGDNGAVLRERILAQYPVALIDEFQDTSPLQY 426 Query: 395 RIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSA 450 R+F +I+ + P +ALLLIGDPKQ+IY FRGADI +Y++AR HY L TN+RS Sbjct: 427 RLFDQIYRTAANDPHSALLLIGDPKQSIYGFRGADIHSYLQARRATEGRHYVLGTNYRST 486 Query: 451 PGMVNSVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMK 500 +V +VN F+Q + AFMFR +PF PV + G+++ L G Sbjct: 487 EALVGAVNHWFAQAEQRSGEGAFMFRRGSHNPLPFEPVAAQGRSEQLH-TRDGAMHALTV 545 Query: 501 MWLM-EGESCGV------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR--A 551 W E G+ + + A CA QI WL Q G D R VR Sbjct: 546 AWSAGRDEDTGIPLPLAADEVRRRFAAHCAEQIVQWLTDPQAG----FVQPDGRLVRLRP 601 Query: 552 SDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENT 611 +DI+VLVR+ +EAA VR L + SVYLS++DSVF + EA ++L+ L+AV P Sbjct: 602 ADIAVLVRTGREAAAVRRELQARAVASVYLSDQDSVFASDEAHDLLYWLRAVAAPLDAQA 661 Query: 612 LRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIA 671 +R+ LAT ++GL+ ++ L DE A+D E+ IW + GV+ MLR + ++ Sbjct: 662 VRAGLATRLIGLSLDELAWLAADEEAFDARSEQLRELHSIWLRLGVLAMLRQTLYRLDLP 721 Query: 672 ENLL--ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL 729 L GGERRLT+ LH++ELLQ A QLE E AL+RWL+ I P S + Q +RL Sbjct: 722 VRWLQDPAMGGERRLTNYLHLAELLQTASAQLEGEQALIRWLATQIETPGSGSEEQVVRL 781 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA-------FYHDRHSFEAV----L 778 ESD LV++VT+HKSKGLEYPLV LPF +FR E+A D +A L Sbjct: 782 ESDADLVKLVTVHKSKGLEYPLVCLPFAGSFRPMERARTPFLTLSAQDESQDDAAPARRL 841 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 L+ + E + A+ ERL EDLRL YVALTR LG+APL +RG+ K + Q A Sbjct: 842 LLDFSDEELAQADRERLREDLRLFYVALTRPRHALWLGLAPL--KRGNGKACVN-EQGAA 898 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDD--IAWQ--TAQTGDNQPWQVNDVSTAELNAKTLQ 894 G LL EP+ A G R ++ LC +D +AW+ A WQ +T +A Sbjct: 899 GYLLGGTEPRSAQGWRDGLQQLCGEDPHMAWRDLDAVPLQRTRWQPPAGATPLHDAPAYD 958 Query: 895 RLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDV---------------------DAAGVAS 933 W + S+S L + +A +P L V D AG+A Sbjct: 959 ARFDTRWGIGSFSALVR---AMAAPSLPVLPVAVQRPAEDEQALEPPPSPELADIAGLAG 1015 Query: 934 ---VVEEPTLTP---HQFPRGASPGTFLHSLFEDL---DFTQPVD-----PNWVREKLEL 979 + + P P H+F RG G F+H E L DF PVD + + + E Sbjct: 1016 LQPLQDGPAGGPAVWHRFLRGPVVGNFVHDQLEWLGGEDFALPVDGQGALADRLVRRCER 1075 Query: 980 GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 G Q +L W+TAV+ PL V+L+ L + EMEF+LP + L A ++D L Sbjct: 1076 AGRGEQARDLLA-WLTAVVHQPLAPLDVTLATLGPQLS--EMEFWLPARQ-LPAERIDQL 1131 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 R+F P L + GML GF DLVF HEGRY++LDYKSN LG D +AY Q+A+A Sbjct: 1132 CRRFILPGQERPALPQRSLHGMLMGFADLVFCHEGRYWVLDYKSNHLGPDGAAYGQEALA 1191 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTT 1158 AM HRYD+Q LY LALHR LR R+ Y+ + GG +Y FLRG+D P G++ Sbjct: 1192 RAMLHHRYDVQAALYLLALHRLLRSRLGTAYEPQRQLGGALYYFLRGIDG--PAGGMHAM 1249 Query: 1159 RPNAGLIALMDEMFA 1173 P L+ +DE+ Sbjct: 1250 APELPLLDALDELLG 1264 >UniRef50_A4SEL9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEL9_PROVI Length = 1167 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 434/1206 (35%), Positives = 641/1206 (53%), Gaps = 88/1206 (7%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ + L G L+EASAGTGKT+ + LYLRL++ + L E +LVVT+TEA Sbjct: 4 LNTSSIALSGINLVEASAGTGKTYALTELYLRLII--------EKELLPESILVVTYTEA 55 Query: 68 ATAELRGRIRSNIHELR------IACLRE--TTDNPLYERLLEEIDDKAQAAQWLLLAER 119 AT ELR +IR I + + C + + + E+ E+ + A +LL Sbjct: 56 ATKELRQKIRERIRDTTAMLASPLECTKRLASLGSLAMEKGAGEVSSLLENALYLL---- 111 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 D A+VFTIHGFC R L NAFESG L++ ++ DE L DFWR + + Sbjct: 112 --DTASVFTIHGFCLRALQDNAFESGSLYDTEIAADERELAGSIVDDFWRSRYFSSTAVL 169 Query: 180 AQVVFETWKGPQALLRDIN--RYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 + + P++ LR + R GE + + D + + ++I + WR Sbjct: 170 PGYAMK--ESPESFLRFLGEVRASSGERIIPQFSSSDIVAIEDECQSLYSQI---AEMWR 224 Query: 238 DAVGELDALI-ESSGIDRR--KFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 D ++ +I E G+ R K+ + + + A+ EE + L E + KFS + Sbjct: 225 DEGEKVKKMISEDRGLSRAAGKYREDDLVELFRGMDAFVEEAL-PFSLFEGIVKFSASRM 283 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA-EIRETVAREKRRRGELGFDD 353 + TK PRH LFE D + R L + L R+ + + K+ FDD Sbjct: 284 AEWTKKKFTPPRHKLFELCD-CYHRAIRQRFLALKAELILYCRDRLPKRKKEANIRFFDD 342 Query: 354 MLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLI 412 +L + +AL E GE +R R+P A+IDEFQDTD +QY IFR I+ + + L LI Sbjct: 343 LLHDMHTALFNHEEGEAFRLLLRRRWPTALIDEFQDTDARQYDIFRSIYE-KADGPLFLI 401 Query: 413 GDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 GDPKQAIY+FRGAD+F Y+KA V +TL NWRS P ++++ N LFS D F+F Sbjct: 402 GDPKQAIYSFRGADVFAYLKASRNVEEGRRFTLTHNWRSVPQLLDAFNVLFSNVPDPFLF 461 Query: 471 REIPFIPVKSAGKNQALRFVF-KGETQPAMKMWLM-----EGESCGVGDYQSTMAQVCAA 524 EI + + S + RFV K + + ++ ++ E V + ++ A Sbjct: 462 GEISYRSLVSGTPEREDRFVVQKDDGRVPLEFLVLDASMKENALFSVDEATGFASEAVAG 521 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 +I L++ + GE L+ RP+RA DI+V+VRS ++AA+VRDALTL IPSV S+R Sbjct: 522 EIFKLLRSARNGETLI----GGRPLRADDIAVIVRSHRQAARVRDALTLFAIPSVVRSDR 577 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 SVF + EA+E+ LL A++ P E +R+AL T ++G + DI + +DE W + Sbjct: 578 -SVFASNEAREIAILLAALVDPSDEGKIRAALITDILGRSGNDIGAMMDDESLWVPQLHF 636 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLES 703 F +W +RG M M L+ ++ LL+ A GERRLT++LH ELL Q+ + Sbjct: 637 FARLHSLWIERGFMTMATVLLREEDVRRRLLSLAEGERRLTNLLHCIELLHQKEHEEGVG 696 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR-- 761 AL W +Q+++E Q+RLE+D+ V+I+TIH SKGL++P+V+ PF+ N Sbjct: 697 PEALASWFTQNMVEGGQRDEEYQLRLETDEPAVKIMTIHVSKGLQFPVVYCPFLWNGSPA 756 Query: 762 VQEQAFYHDRHSFEAVLDLNAA--PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 ++ A +HD +AVLD + + L+ E+LAED+RLLYVALTR+V+ CS+ VAP Sbjct: 757 ARDVAAFHDEGD-KAVLDFGSEDFEHHLVLSHEEQLAEDIRLLYVALTRAVYSCSVVVAP 815 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA-QTGDN-QP 877 + + Q+AL LLQ G + + A D + +T Q G + QP Sbjct: 816 IRKT-----------QTALNHLLQSGTRETLHEQLNHLIARGDGAVGMRTIDQPGASVQP 864 Query: 878 WQVNDVSTAELNAKTLQRLPGD---NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASV 934 +++ E + G +WR+ S+S + + A +P D V Sbjct: 865 AALHEAFRRENGEAVRKVFTGRIDRSWRIASFSFFTRGSY--AHPELPDRDEMQRNVPDG 922 Query: 935 VEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN---WVREKLELGGFESQWEPVLT 991 + P + FP GA G F+HS+FE LDF++P D + ++ LE G+ QW PV++ Sbjct: 923 AKHPGPSIVTFPGGAQAGIFMHSIFETLDFSRPFDDSTEEGIKNALERSGYHQQWLPVIS 982 Query: 992 EWITAVLQAPL---NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 + VL L + + +LS L EMEF+ P+ L L +L R +A Sbjct: 983 SMVRTVLSVSLGMEDGSSFTLSDLKPGEWVTEMEFFFPL-RFLTPDHLSSLAR-----TA 1036 Query: 1049 GCPP-LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 P L+F VRGML G+ID+VF+ GRY+LLD+KSN LGE +YT++ M A M H Y Sbjct: 1037 LHPAQLDFAPVRGMLIGYIDMVFQAGGRYWLLDWKSNHLGESLDSYTKERMEAVMGFHHY 1096 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ-QGIYTTRPNAGLIA 1166 DLQY LYT+ALHRYL RI DY Y+ HFGGVIY+FLRGVD+ + +G Y RP+ L+ Sbjct: 1097 DLQYLLYTVALHRYLSVRIPDYRYQTHFGGVIYVFLRGVDESSGESRGFYRARPSEELVN 1156 Query: 1167 LMDEMF 1172 + E+ Sbjct: 1157 SLTEIL 1162 >UniRef50_Q1N2R0 Exodeoxyribonuclease V beta chain n=1 Tax=Bermanella marisrubri RepID=Q1N2R0_9GAMM Length = 1184 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 425/1210 (35%), Positives = 647/1210 (53%), Gaps = 74/1210 (6%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L L PL+G LIEASAGTGKTFTIAALYLRL+LG G + P++ E +LVVTFT Sbjct: 4 QKLSLLDAPLKGISLIEASAGTGKTFTIAALYLRLVLGHGCN-----PISPENILVVTFT 58 Query: 66 EAATAELRGRIRSNIHELRIAC-LRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 +AAT ELRGRIR+ + + A ++ + +P LL+E+D + A + L A + MD A Sbjct: 59 KAATEELRGRIRNRLRQAYNAIQTQDESLDPFVFSLLKELDHTS-ALERLKDAVQIMDIA 117 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A++TIHGF Q++L+ + ES + E +LI D+ + A D WR+ YPL +V Sbjct: 118 AIYTIHGFAQKVLSQYSVESHVDDEFELILDQQEIEMTAVNDVWRKFVYPLSEAELDIVL 177 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 + W P LLRD++ ++ + + + + + H + D Q W+D Sbjct: 178 DAWGSPSVLLRDVSTLVRRDVEFKDSNIKNLQDIDVAHKRFKDAFDKFCQDWQDQGQAFF 237 Query: 245 ALIESSGIDRRKFNR--SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG- 301 I + + F S + + +D ++ A + +EK+ F E K Sbjct: 238 NAIYDNEYASKSFTNHLSRRKQHLDDFTSGA--------YVKDIEKYIGYFTESGIKKSV 289 Query: 302 ---GETPRHPLFEAIDQLLAEPLSIRD-------LVITRALAEIRETVAREKRRRGELGF 351 GE H + + ++ A L ++ L R IR + K+ + L Sbjct: 290 TKKGEPTDHEMILSFTKMHAALLQWQEQKQQATLLWKIRFTEAIRTRLDELKQAQSVLCA 349 Query: 352 DDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE-TAL 409 DD+L ++ LRS S E L + +FP+AM+DEFQDTD QYR+F +++ PE T Sbjct: 350 DDLLKQV---LRSLGSSESLCTLLCQQFPMAMVDEFQDTDSTQYRVFSKLYSETPEETGF 406 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 +IGDPKQAIY FRGAD+FTY++A++EV ++L N+RS+P +V++VN LF D F+ Sbjct: 407 FMIGDPKQAIYKFRGADVFTYIQAKTEVEREFSLQDNYRSSPSLVSAVNALFQCHDRPFI 466 Query: 470 FRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 F + IPF PV +A K+Q ++ + + + ++ +S G+ D ++ +A A Q+ Sbjct: 467 FDDSIPFYPVGAASKSQLIQSRDIDNSACVFQTFDIDSDS-GIEDIRTEVAHGVAEQVSV 525 Query: 529 WLQAG--QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 L +G Q + + DD R + + DI++LVRS +A V+ AL + +V+ ++S Sbjct: 526 LLSSGLEQSTKVFDSDLDDYRDISSRDIAILVRSAHQARLVKQALDERGVAAVF-KGQES 584 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 ++ + EA + LL ++ + E + R+ALA + L+ + T E W+ +E Sbjct: 585 LYNSAEALAVYELLNSLHSLS-EQSYRNALANPVWMLSLDQLATHLQHEVCWEEELELMY 643 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHA 706 ++IW K+G+MPML + +R + + A GERR+T+ LH++ELLQE ++L+ Sbjct: 644 ECKRIWIKQGIMPMLMHWLHSRGLPQQWFALTDGERRITNYLHMAELLQEQASRLQGMQG 703 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA 766 L+ W +H L+ + Q+RLESD++LV IVT+H SKGLEYP+V+LP+ + Q Sbjct: 704 LLTWF-EHKLQNTYQSEEAQLRLESDENLVSIVTVHSSKGLEYPVVFLPYAWSMSKQVDV 762 Query: 767 FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGD 826 Y D + DL + V L E +LAE++RLLYV +TR+ + V + Sbjct: 763 IYFDEITQSLCCDLEDVHKDVRLKE--QLAEEVRLLYVGVTRASSQLYVTVPT---HCDN 817 Query: 827 KKGDTDVHQSALGRLL-----QKGEPQDAAGLRTCIEALCDDDIAWQTAQ-------TGD 874 KK ++ + S L +L K E A L I L AQ T Sbjct: 818 KKINSTLLASPLFHVLCGSNENKVEAAPADQLANAISTLEKKSEQGVFAQQVLPYELTSF 877 Query: 875 NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASV 934 P D T + K Q W ++S+S L + H ++D + Sbjct: 878 KAPDPEGDWQTTQFEGKIKQ-----PWFMSSFSSLVRGLHVPHHQRFNFDEIDDDLIIPE 932 Query: 935 V--EEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV--DPNWVREKLELGGFESQWEPVL 990 V ++ L P FP+GA G FLH+LFED+DFT+P+ + V+E L GFE +W + Sbjct: 933 VPLDKDILNPFTFPKGAHAGNFLHNLFEDIDFTRPMIDQVSTVQELLMRYGFEEKWLETV 992 Query: 991 TEWITAVLQAPLNETG----VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 EW +L APL + +SLS L K VEMEFY P++ L S+ + L+R++ L Sbjct: 993 LEWSQKILHAPLQDQTLDKPISLSDLQPDQKSVEMEFYFPVN-GLSCSKFNALLRKYPVL 1051 Query: 1047 SA--GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 L+F ++GMLKGFIDL F +GRYY+LDYKSN+LG++ + Y + AM AM Sbjct: 1052 GTVQQVQDLDFDFLQGMLKGFIDLTFECQGRYYVLDYKSNFLGDELTHYHRNAMTQAMAE 1111 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGL 1164 HRYD+Q LYTLALHR L+ + +Y+Y+ H GG YLFLRG+ E Q G + +PN L Sbjct: 1112 HRYDVQLVLYTLALHRLLKLTLPNYNYDEHMGGGFYLFLRGISGE-SQYGQFYHKPNRLL 1170 Query: 1165 IALMDEMFAG 1174 I +D M +G Sbjct: 1171 IEALDAMISG 1180 >UniRef50_C5JAU7 Exodeoxyribonuclease V, beta subunit n=1 Tax=uncultured bacterium RepID=C5JAU7_9BACT Length = 1228 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 468/1250 (37%), Positives = 651/1250 (52%), Gaps = 107/1250 (8%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L PL PL G RLIEASAGTGKT+TIA LY+RL+LG G + PLT E+L Sbjct: 1 MTGLPPELQPLDFPLVGNRLIEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEIDDKAQAAQW------ 113 VVTFT AAT ELR RIR+ + E AC R+ TD ++ LL + W Sbjct: 61 VVTFTRAATRELRERIRARLAEA-AACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARR 119 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L LA MDEA+V TIHG+C RML +AF+S F ++L D+ L + D+WR H Sbjct: 120 LQLAAEWMDEASVETIHGWCHRMLQEHAFDSDTPFTRELAADQRALLTEVVRDYWRIHLA 179 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 PL R A +F+ W L ++R + + ++ AP P L R+ Q R+ +K Sbjct: 180 PLSRVAAAELFDCWPKIDRLQAGVSRIFR-QVGLLAAPEPFAALLEERY-QARTRLVEMK 237 Query: 234 QQWRDAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQL--PESLE 287 +++ + L AL++ + ++ RK W+D ++AW + + + Sbjct: 238 RRFVGWLPALQALLDEAVARKWVNGRKLQVRYYQPWLDLLAAWCADARQPFPAWSDAAWW 297 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL---VITRALAEIRETVAREKR 344 + + L + K G + P HP+F A++ L E + L ++ A + E A EK Sbjct: 298 RLTPAGLAEAWKVG-QPPAHPVFLAVETLHGEQVRWSMLCQRLLVHAAHWVAERFAAEKA 356 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH- 403 + FDD+L RLD+ L+ +G LAA +R +FPVA+IDEFQDTDP QYRIF I+ Sbjct: 357 GLACMEFDDVLLRLDAGLQGPNGARLAALLRRQFPVALIDEFQDTDPVQYRIFAAIYRDL 416 Query: 404 ---QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-TLDTNWRSAPGMVNSVNK 459 TAL+LIGDPKQAIYAFRGADI TY+ AR + TL N+RS MV +VN+ Sbjct: 417 AGADDGTALVLIGDPKQAIYAFRGADIHTYLAARRALAGRIDTLGRNFRSTAAMVQAVNR 476 Query: 460 LFSQTD-----DAFMFR-----EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 LF+ + AF+ R IPF PV + G+N +V G +QPA+ + Sbjct: 477 LFAAAETRSGGGAFLQRVAGEDPIPFFPVTAQGRNDL--WVVDGVSQPALTL-------A 527 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVR 568 G+ ++ MA CA+++ LQ GQ G A GD + P+R D++VLV+SR E A +R Sbjct: 528 WSGEPRAWMADACASEMVRLLQLGQEGRAGFRAGDGSLTPLRPVDLAVLVQSRAEYALLR 587 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL + VYLS+++SVF + A EM L A PE LR+ALAT+ +G+ L+I Sbjct: 588 AALARRGVRCVYLSDQESVFASPCAFEMRHWLAACAAPEDTVLLRTALATATLGVGWLEI 647 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA-----GGERR 683 + L DE + + +F G R+IWR++G++PMLR L+ + LLA GER Sbjct: 648 DALGRDERLLEQRMRQFVGLREIWRRQGLLPMLRRLLHEFAVPSRLLAGEIDGERSGERL 707 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA---SSQQMRLESDKHLVQIVT 740 LTDILH++ELL E E A++R+L + + + D A S + RLESD LV+IVT Sbjct: 708 LTDILHLAELLGGQAVAGEGELAVLRFLDEALRQADEGAREESERLSRLESDADLVRIVT 767 Query: 741 IHKSKGLEYPLVWLPFITNFR-VQEQAFYHDRHSFEAVLDLNAAPESVDLA--EAERLAE 797 +HKSKGLEYPLV++PF + R V + H V L A + LA + ERL E Sbjct: 768 VHKSKGLEYPLVFVPFAGSCRPVSARDLPMRGHDDAGVEQLLFAADEAQLARLDLERLRE 827 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI 857 + R LYVALTR+ + +GV ++ RR SAL LL E AG+ + Sbjct: 828 ETRRLYVALTRARYAVWVGV--VLERR--------FANSALHALLGGPEELSEAGIAALL 877 Query: 858 EAL--CDDDIAWQTAQTGDNQPWQVNDV----STAELNAKTLQRLPGDNWRVTSYSGL-- 909 L D I A + +Q +D + A+ +R D W + SYS L Sbjct: 878 MPLNRADGTIVATPAPAPEWHRFQPHDGEGTGAAWRGGARQARRRVRDPWWMASYSALLA 937 Query: 910 ----------QQRGHGIAQDL-----MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTF 954 + G ++L +P D +G + E H FPRGA GT Sbjct: 938 PLGPMAPNAPESPGEAQFRELALERFVPPAPSDGSGASDGGEAGL---HTFPRGAKAGTV 994 Query: 955 LHSLFEDLDFTQ----PVDPNWVRE----KLELGGFESQWEPVLTEWITAVLQAPLNETG 1006 LH L D VR+ +LE G+ S W LT W+T L +G Sbjct: 995 LHELLAWCGVCGFGAVAADSERVRQEVARRLEPRGW-SAWRDPLTRWLTTFLTTRFELSG 1053 Query: 1007 VSLSQLSARN---KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLK 1063 + R+ QVEMEF+L + L +QLD PPL+ + GM+K Sbjct: 1054 SGGALFCPRDLEHYQVEMEFWLAVGH-LPTAQLDQWACTTIEPGRDRPPLQGRALHGMVK 1112 Query: 1064 GFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 GF+DL+F H RYYL+DYKS WLG D +AYT +AM A + R+DLQ LY ALHR L Sbjct: 1113 GFMDLLFEHRRRYYLIDYKSTWLGADDAAYTPEAMRAEILHARHDLQGILYLYALHRQLA 1172 Query: 1124 HRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 R+ DY E H GG +++FLRG+ E P QGIY P A ++ +D +F Sbjct: 1173 ARLVDYAPERHLGGALFVFLRGL--EAPGQGIYRLEPTAEMMRALDGLFG 1220 >UniRef50_C1D6T6 RecB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T6_LARHH Length = 1216 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 492/1236 (39%), Positives = 658/1236 (53%), Gaps = 85/1236 (6%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL----GGSAAFPRPLTV 56 MS++ + LDP R PL G RLIEASAGTGKTFTIAALYLRL+LG G A L Sbjct: 1 MSNLMQALDPRRFPLHGLRLIEASAGTGKTFTIAALYLRLVLGARSEDDGLAFNAGGLLP 60 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI--DDKAQAAQWL 114 ++LVVTFTEAAT ELR RIRS + E A + +D+ LL++ + + A L Sbjct: 61 PQILVVTFTEAATEELRERIRSRLVEAARAFRQNDSDDAFLRGLLDDYPAGQRGRHAHQL 120 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA + MDEAA+FTIH +CQ+ML +AF+SG LFE + DES LR QA D+WRRH YP Sbjct: 121 ELAAQWMDEAAIFTIHAYCQKMLRTHAFDSGSLFELTVNTDESALREQAVNDYWRRHFYP 180 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAP-PPDDETLASRHAQIVARIDTVK 233 LPR + P L R + L G P A P + LA+R A+ A + Sbjct: 181 LPRARLLPLQAIAASPAELGR-LALPLLGRLPAGPADWTPVEAILAARRAEKAA---WRQ 236 Query: 234 QQWRDAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP-ESLEKFSQ 291 Q W + + L L E+ ++ K + KW+D ++ W +++ L + E Sbjct: 237 QGWLEELARTLTGLRENKTVNGNKVRADSCQKWLDDLADWLARDSDDLPLAGKPFETARW 296 Query: 292 RF----LEDRTKAGGE-TPRHPLFEAIDQLLAEPL---SIRDLVITRALAEIRETVAREK 343 R + D KAG P P F A+++LL L S+R ++T A I +A EK Sbjct: 297 RLTPAGILDALKAGMSFDPPEPFF-AVERLLQPALADTSLRAALLTHATRSIAAALAAEK 355 Query: 344 RRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 RR E+GFDDM+ L AL +S E LA A+R +PVA+IDEFQDTDP QY IFR ++ Sbjct: 356 SRRAEIGFDDMIRGLAQALAPDSPNRERLAQALRQAYPVALIDEFQDTDPAQYAIFRTLY 415 Query: 402 HHQ-PET--ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNS 456 PE LL+IGDPKQAIYAFRGADIFTY+ AR + YTLDTNWRS MV Sbjct: 416 ADAGPEARLGLLMIGDPKQAIYAFRGADIFTYLAARHDTRPEQRYTLDTNWRSTTAMVGV 475 Query: 457 VNKLFSQTDDA-------FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 VN+LF + +A F +IPF V++AG+++ R V G P + + + E+ Sbjct: 476 VNQLFCGSPEAGTVSETVFGRPDIPFQAVRAAGRSE--RLVQGGMPVPPLTLAWRQ-EAG 532 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 DY+ A+ A I L + G LL + P+ DI+VLVR QEAA +R Sbjct: 533 NKDDYRQEFARRAAEAITTLLNDSEAG--LLADDGGFEPLAPRDIAVLVRDWQEAAAIRR 590 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL L + SVYLS++DSVF + EAQ+++ L AV+ E LR ALAT+ +GL+ ++ Sbjct: 591 ALDLCSVRSVYLSDKDSVFASQEAQDLVRWLDAVLYAEDNARLRLALATATLGLDYAGLD 650 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA--TAGGERRLTDI 687 L NDE W+ E F YRQ WR++GV+PML AL+ + LLA GGER+LT++ Sbjct: 651 RLFNDEREWERTSERFRSYRQTWRQQGVLPMLLALLHDYRLPARLLARRDEGGERQLTNL 710 Query: 688 LHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 LH++E LQ ++ E ++R L + +PD+ A +RLES+ V++VT+HKSKGL Sbjct: 711 LHLAERLQADAAGIDGEVGVLRHLERLTEQPDA-AQESVLRLESEDARVRVVTLHKSKGL 769 Query: 748 EYPLVWLPFITNFRV----QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 EYPLV+LPF+ R + F+HD V + + + E ED+RLLY Sbjct: 770 EYPLVFLPFLAGGRALPDGRNGIFWHDGDGRLHVDLTGQDADGLAAMQRESAQEDMRLLY 829 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCD 862 VALTR+ +G++PL GD + SA+GRLLQ +P AG R A Sbjct: 830 VALTRARHALWIGLSPL-----SGTGDL-LAGSAIGRLLQLDSDPGRLAG-RLHALAQAG 882 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAEL-NAKTLQRLPGDNWRVTSYSGL----QQRGHGIA 917 DI D P + L A+ L R WR+ SYS L Q G A Sbjct: 883 SDIRLDDTPPADPPPRYCDSTPAPVLFPARRLTRRIARRWRIASYSALLTGPAQAGPPAA 942 Query: 918 QDLMP--RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE---DLDFTQPVDPNW 972 +D R+D A + V+ T F RG G FLH LFE F + + Sbjct: 943 EDSAAANRIDDTAMPDSPVLPIAGRTLAGFWRGPQAGIFLHGLFEWAAQQGFGRTCELAA 1002 Query: 973 VREKL--------ELGGFESQWEPVLTEWITAVLQAPL---NETGVSLSQLSARNKQVEM 1021 R L EL G W W+ VL PL + + V+L+ L R+ + E Sbjct: 1003 ERRDLLARRCQRRELAG----WIDFFDGWLPWVLTRPLPLNDASPVTLAALPPRSARAET 1058 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 EF+L + L + LD + P L ++G+ KGFIDLVF HEGR+Y+LDY Sbjct: 1059 EFWLGNPQ-LATTALDAAVSVAVWPGHARPALLPQSLQGLFKGFIDLVFEHEGRFYVLDY 1117 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI-ADYDYEHHFGGVIY 1140 KSNWLG+ +Y A+ M AHRY+LQ LY LALHR LR R+ ADYD GG + Sbjct: 1118 KSNWLGDTPGSYHPDALRDEMLAHRYELQGMLYLLALHRLLRARLGADYDPATRLGGFVC 1177 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 FLRG D P GI + L+ +D +FA T Sbjct: 1178 WFLRGTDG--PGAGIVHLPADLALLDRLDHLFACET 1211 >UniRef50_A1AQY7 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Bacteria RepID=A1AQY7_PELPD Length = 1203 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 432/1214 (35%), Positives = 633/1214 (52%), Gaps = 82/1214 (6%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ L + L G LIEASAGTGKT+ IA LYLRL++ LT E++LVVT+TEA Sbjct: 4 LEHLGIELSGRNLIEASAGTGKTYAIACLYLRLVI--------ESDLTPEQILVVTYTEA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQ----AAQWLLLAERQMDE 123 AT ELRGRIRS I + + +P L+++++ + A L A + D Sbjct: 56 ATEELRGRIRSRIRQALDTFSGTVSKDPFLLGLVQKVNKEGPGEDIARNRLDRALKSFDL 115 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 A++FTIHGFC R L NAFESG L++ +LI D++ L + DFWRR + P + Sbjct: 116 ASIFTIHGFCLRALQDNAFESGSLYDTELITDQADLLQEVVDDFWRRTFFSEPAPLLGYA 175 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 T P A + + G + P D ++ S + VK+ W ++ E+ Sbjct: 176 LRTKLSP-AYSSTFLKGMLGNPKLEILPNFDLGSIPSLQEECETLFSLVKEIWLNSHTEI 234 Query: 244 DALIES-SGIDRRK--FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 LI S G+ R K +N + + A+A + N + L K + K Sbjct: 235 RELIRSDKGLSRAKGAYNPDTLPPLFEAMDAYARSD-NPFDLFSDFSKLCTIGILKGKKP 293 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVI-TRALAEIRETVAREKRRRGELGFDDMLSRLD 359 G HP F+ +QL + + R L + LA E VA K R FDD+L+ L Sbjct: 294 TGAPLSHPFFDLCEQL-RQRVGQRFLALKAELLAFAAEHVAARKSERNIRFFDDLLTSLY 352 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL G+ A +R ++ A+IDEFQDTDP Q+ IFR+I+ P L LIGDPKQAI Sbjct: 353 EALGGPRGDDFALCLRQKYRAALIDEFQDTDPVQFDIFRKIYA-DPAHPLFLIGDPKQAI 411 Query: 420 YAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477 Y+FRGADIF Y+KA + V A +TL +NWRSAP ++ + N LF F+F EI + Sbjct: 412 YSFRGADIFAYLKAAAGVEATRRFTLTSNWRSAPALLAAFNALFDNDFKPFLFGEIAYHS 471 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLM----EGESCGVGDYQSTMAQVCAAQIRDWLQAG 533 V S + + R + +++W + EG++ VG ++ AA+I L+AG Sbjct: 472 VASGLEEEGNRLTWAEADDAPLQLWCVPPDEEGKASNVGRANKSVPMAVAAEIARLLRAG 531 Query: 534 QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 GEAL+ D RPV I+V+VRS ++A +++AL L IPSV S+ S+F T EA Sbjct: 532 MAGEALI----DGRPVLPEHIAVIVRSHRQAGYIQEALKNLSIPSVMRSDA-SIFTTREA 586 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWR 653 +++ LL A+ P E LR+AL T + GL DI TL +E W+ + +F Y QIW Sbjct: 587 RQVCTLLAALAAPGNEWKLRAALVTDIFGLTGDDIATLLEEEPLWEEWLSKFQEYHQIWL 646 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLS 712 +RG M M++ L+S + LL GERRLT++LH E+L A + L W Sbjct: 647 ERGFMVMVQTLLSREGVRGRLLRKPDGERRLTNLLHCCEILHAASQERSLGPEGLAVWFG 706 Query: 713 QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNFRVQEQAF-YHD 770 + I D++ Q+RLE+D+ V+I+TIH SKGLEYP+V+ PF+ R E+ +HD Sbjct: 707 ERISAGDAS-EGYQIRLETDEKAVKILTIHVSKGLEYPIVFCPFLWAGVRSDEEVVTFHD 765 Query: 771 RHSFEAVLDLNAAPESVD--LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 F V D +A + + LA+ E LAE+LRLLYVALTR+ + C L +V G + Sbjct: 766 --DFRLVKDYGSADQELHRVLAQKESLAENLRLLYVALTRAKFRCYLVTGKIVDSTGRNR 823 Query: 829 GDTD-----VHQSA-----------LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT-AQ 871 +T H SA LG+ ++K ++ + A D I+ + + Sbjct: 824 PETSPLAYLFHASATTRNADDTVGQLGQEVKKLSAEEMEQQLRAVAARQQDAISVSSMPE 883 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV 931 G + ++ L+ K + +WRV+S++ L H ++ +P D A Sbjct: 884 AGGAERYEPFHDGGERLSEKKFNAMIERDWRVSSFTSLAS--HDLSTTELPDRDEAGAKE 941 Query: 932 ASVVEEPTLTPHQ-----FPRGASPGTFLHSLFEDLDFTQPVD---PNWVREKLELGGFE 983 ++ P P + FP+GA G FLH +FE LDF+ + V L+ F Sbjct: 942 TALPPLPEADPREKSIFTFPKGAHAGIFLHEIFEKLDFSGSSGEKTTDLVAACLKKHCFG 1001 Query: 984 SQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 ++W+ +++ I V+ + E SLS L E+EF+ P+ + S + L Sbjct: 1002 AEWQSTISDMIENVVSTQFSAPEGPFSLSDLRQGKWLAELEFFFPLK--FVTSNI--LKE 1057 Query: 1042 QFDPLSAGCP---------PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 S+GC L F +GM++GF+D+VF H GR+YL+D+KSN LG A Sbjct: 1058 CLGSWSSGCTAVNLQALAQSLRFRPAKGMVRGFMDMVFEHGGRFYLVDWKSNHLGYRVEA 1117 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ 1152 Y ++A+ +AM + Y LQY LYT+AL+RYL RI +Y YE HFGGV+YLFLRG+D+E + Sbjct: 1118 YGEKALTSAMDQNLYSLQYLLYTVALNRYLSLRIKEYRYETHFGGVLYLFLRGMDRERGE 1177 Query: 1153 Q-GIYTTRPNAGLI 1165 G++ P AGLI Sbjct: 1178 AFGVFRDTPPAGLI 1191 >UniRef50_Q2LTC8 Exodeoxyribonuclease V beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTC8_SYNAS Length = 1230 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 428/1246 (34%), Positives = 628/1246 (50%), Gaps = 113/1246 (9%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D L PLQG LIEA+AGTGKT+ I+ L+LRL++ L V E+LV+T+T A Sbjct: 4 FDLLNAPLQGRNLIEANAGTGKTYAISGLFLRLIV--------EHALQVGEILVMTYTVA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPL---YERLLEEIDDKAQAAQWLLLAERQMDEA 124 AT EL+ RIR + A ++ + R L E D A + L A R DEA Sbjct: 56 ATEELKDRIRCTLSRALEALGHGRVEDLFLDSFVRRLAEDDRTNSARRRLATALRDFDEA 115 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIHGFCQR L NAFES F +LI + + DFWRRH Y E+ Sbjct: 116 AIFTIHGFCQRTLQENAFESHSTFNAELITESEKITDLILQDFWRRHFYEAQPELVAYAL 175 Query: 185 ET---WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 ET G ++ LR I+ + V++ P P+ + + A I ++ W++ Sbjct: 176 ETKNNLAGYRSFLRQISSHPDIRI-VLEPPAPNHDIVEEEIAAYRREISKLRDSWKECRE 234 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 + +L+ ++ + + +++D++ + E + LP++ EKF+ L + G Sbjct: 235 TVCSLLRDGSLNGKVYGEYQTDRYVDELDVFLERGGPCFPLPKNFEKFTAGKLSRSCRKG 294 Query: 302 GETPRHPLFE---AIDQLLAEPLSIRDLVITRALAEIRETVARE----KRRRGELGFDDM 354 P+H FE I+ L + D ++ E+ +T+ E K RR L FDD+ Sbjct: 295 CVPPKHHFFEICQVINDLEKRLKVVLDSILLSLKKELLQTIHAELPAFKTRRNILFFDDL 354 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-HHQPETA----L 409 L RL AL G++LAAAIR ++ A+IDEFQDTDP QY I + + ++PE + + Sbjct: 355 LLRLRDALGRPEGDLLAAAIRRKYRAALIDEFQDTDPVQYAILQAAFLCNRPEESDKPPI 414 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 LIGDPKQAIY+FRGADIF YM A +V A YTL NWRSAP ++N+VN +F + F+ Sbjct: 415 FLIGDPKQAIYSFRGADIFAYMAAAKQVDAAYTLQENWRSAPALLNAVNSVFHSHPNPFV 474 Query: 470 FREIPFIPVKSAGKNQALRFVFKG--ETQPA-MKMWLM-------EGESCGVGDYQSTMA 519 + I F+ K A Q + + G E PA +++W++ + + G G + Sbjct: 475 YEAISFMDSKPAPGGQKEQLILAGPDEWDPAPLQLWVIPDHQKGGKVKPLGKGHATPGIL 534 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 Q A+I L AG++G AL+ N R + A D++VLVRS +EA ++ AL IP+V Sbjct: 535 QAVTAEISHLLDAGRKGMALIGN----RRIEAGDVAVLVRSNREARLIQQALLEGSIPAV 590 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 + +RD++F++LEA +M LL+A+ P E L +A+ TS++GL+ + L DE W+ Sbjct: 591 -MHSRDNLFDSLEATDMDLLLRAIEVPNDERRLGAAMMTSLLGLSIGALYRLKIDERQWE 649 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAG 698 ++ F Y + W++ G M M+R+L+ +I LL+ GERRLT++LH++E+L +E+ Sbjct: 650 NCLQRFRNYHRQWQEAGFMRMMRSLLRIEDIRSRLLSQPDGERRLTNVLHLAEVLHRESL 709 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI- 757 + L+RWL++ + Q+RLESD V+IVTIHKSKGLEYP+V+ PF+ Sbjct: 710 ERNRGMRGLIRWLAEQRDPGKMRSDEHQLRLESDARAVRIVTIHKSKGLEYPVVFCPFVW 769 Query: 758 ---TNFRVQEQAFYH--DRHSFEAVLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSV 810 + + H D +SF + DL +++ A R LAE +RLLYVALTR+ Sbjct: 770 EGAKDVSKNDALTCHGGDENSF-LLCDLGLPHQALHELRAYREGLAERVRLLYVALTRAK 828 Query: 811 WHCSL---------GVAP--LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA 859 C L G AP L R K + + ++ AA R Sbjct: 829 HRCYLVWGHFNGAGGSAPAYLFHDRTSKWDENNPEEAIAA----------AASFRNFYNE 878 Query: 860 LCDDDIAWQTAQTGDNQPWQV---------------NDVSTAELNAKTLQRLPGDNWRVT 904 L +I + D+ + N+ L+ + R +WR T Sbjct: 879 LTGPEILRDLDRIADSAHGSISIADLPVPTAVTPLPNEHWKGTLSRRNFTRKLEQSWRFT 938 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF 964 S+S L + +P+ D + P G G LH E LDF Sbjct: 939 SFSSL------VFGTYVPQEGADRDREEEYRPLKSSDWQVLPPGTQTGNLLHEFLEQLDF 992 Query: 965 TQP---VDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG----VSLSQLSARNK 1017 + V E L GF+S+W+ L I VL L+ G LS + ++ Sbjct: 993 KERDEMVLQQRASEALSSHGFDSRWKTALLTLIRNVLALSLSGGGNGQSFRLSDICCGDR 1052 Query: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP---------LEFMQVRGMLKGFIDL 1068 E+ FY P+ L L L ++ G P L F VRG L+GFIDL Sbjct: 1053 ISELAFYFPLKR-LTRDNLRILFQEISREDPGMVPDSWDLEMERLSFSSVRGWLRGFIDL 1111 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 VF +GRYYLLD+KSN+LG D S Y+ +A+ + M Y LQY LY LALH YL+ R+ Sbjct: 1112 VFVIDGRYYLLDWKSNFLGADPSGYSPEALKSVMVRKHYILQYHLYALALHAYLKQRLPG 1171 Query: 1129 YDYEHHFGGVIYLFLRGVDKEHPQQ-GIYTTRPN-AGLIALMDEMF 1172 Y E HFGG+ YLFLRG+D ++ G+Y RP+ A L AL D + Sbjct: 1172 YRVERHFGGIYYLFLRGIDPSRGEKTGVYFDRPSEARLTALYDGLI 1217 >UniRef50_A4VRQ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VRQ5_PSEU5 Length = 1182 Score = 587 bits (1513), Expect = e-166, Method: Compositional matrix adjust. Identities = 437/1219 (35%), Positives = 622/1219 (51%), Gaps = 97/1219 (7%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD L P G LIEASAGTGKT+T+ ALY RLLL R L+V ++LVVT+T A Sbjct: 3 LDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLL--------ERQLSVGQILVVTYTTA 54 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 ATAELR RIR+ + +L + + RL D A + LLLA DEAA+F Sbjct: 55 ATAELRERIRARLADLLAVYDGTPSSDDFLNRLHARYPDDASRRR-LLLAVHGFDEAAIF 113 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR L AFE+G F+ +L D+ + AD WR A+ + ++ Sbjct: 114 TIHGFCQRALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELADADPAWARFLAKSR 173 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA-------- 239 PQ L + + +L P ++ P + A + A + V+ W+ A Sbjct: 174 ITPQWLRQRLRSHLG--KPYLRVEP--------QGAPVAADLRPVEAAWQRAAELWKQAG 223 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 + L+ G+ + A W ++ A+ + + LPE KF R L K Sbjct: 224 TAWIAELLTHGGLSQSTHKSVKFAPWQAELDAYFADPAVMFDLPEGAAKFGVRALSKACK 283 Query: 300 AGGETPRHPLFEAIDQL---LAEPLSI---RDLVITRALAE--IRETVAREKRRRGELGF 351 G + P L +A+D+L +A+ L R + + AL E RE R+ +R L F Sbjct: 284 KGFDAPVCELAQALDELADQVADALPAGKQRLIALQVALLERLNRELPERKAAQR-LLAF 342 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLL 411 DD+L+RLD AL+ GE LAA++R +P+A+IDEFQDTDP QY IF RI+ + +L Sbjct: 343 DDLLNRLDQALQGPVGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGRDASLCF 402 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 +GDPKQAIYAFRGAD+ TYM A+ + + L TN+RS P ++ ++N+LF F Sbjct: 403 VGDPKQAIYAFRGADLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFDHP-QPFAQ 461 Query: 471 REIPFIPVKSAGKNQA-LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDW 529 ++ + PV +A K +A LR +GE P +WL + + G GD A A +I Sbjct: 462 PDLRYPPVGAADKPRASLRLAEEGEAAPLSLVWLGD-DPLGKGDAAQLAASDTARRIAVQ 520 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 L A G A P++ DI+VLV + ++A + D L +PSV RDSV+ Sbjct: 521 LAAAAEGRAGFDKDGGFAPLKGGDIAVLVANHRQAGMIADELAARGVPSVR-RGRDSVWR 579 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR 649 + EA E+ +L A P RE LR ALAT ++G +A D+ +D+H WD E + Y Sbjct: 580 SEEAGELAAVLAAYAEPGREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYH 639 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVR 709 Q+W+++G M + RA + + +AE LLA GERRLT++LH+ ELLQ L+ Sbjct: 640 QLWQQQGFMRVFRAWLDEQAVAERLLARVDGERRLTNLLHLGELLQAESLLRPGLEPLLA 699 Query: 710 WLSQHILEPDSNASSQQ--MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----Q 763 W + + S + ++ +RLESD VQIVTIH SKGLEYPLV+ PF+ + ++ Q Sbjct: 700 WFNA---QRGSEGAGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNQ 756 Query: 764 EQAFYHDRHSFEAVLDLNAA--PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 + A HD + +LDL + ++++ A E AE LRL YVALTR+ L P+ Sbjct: 757 DSARCHDADG-QPLLDLGSGELEDNLERARQEVFAEQLRLAYVALTRARDRLWLHWGPVS 815 Query: 822 RRRGDKKG---DTDVHQSAL-----GRLLQKGEP----------QDAAGLRTCIE---AL 860 + K G D +H SAL GR L +P + LR IE A Sbjct: 816 LPKAKKDGSLPDEGLHSSALAWLLHGRELPGEQPLTELGNHLASLNGGSLRLAIERLVAT 875 Query: 861 CDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL 920 D +A ++ + + + E A+ L R WR+ S+SGL H Sbjct: 876 SDGRMACLPLESREASTQGSSRAAPPEQLAQ-LNRSLYSAWRIGSFSGLAAGMH------ 928 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELG 980 M D DA + EP FPRGA GT LH++ ED + V L+ Sbjct: 929 MEAPDRDALAMPD-AGEPGSGFFAFPRGARAGTCLHAILEDWARGKGELAQLVEPALKAY 987 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 G W V T + VLQ L+ G++L+ L A + E+ F P+ E L +L L+ Sbjct: 988 GLPLDWRDVATAQLERVLQTDLDGAGLTLASLLAARRLPELGFTFPVRE-LDVVRLRALL 1046 Query: 1041 RQFDPLSAGCPP-------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 DP + P LEF ++G LKGFIDL F H GR+Y+ DYKSNWLG D+S Y Sbjct: 1047 T--DPANGLAAPLREAAARLEFDSLKGFLKGFIDLTFEHGGRWYIADYKSNWLGPDASYY 1104 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ 1153 + + A+ Y LQY +Y +AL R+LR R+ D+ + GG YLFLRG+ P+ Sbjct: 1105 GGERLLQALAGEHYYLQYLIYLVALRRFLRQRLTDF-RDEQLGGAFYLFLRGM----PEA 1159 Query: 1154 GIYTTRPNAGLIALMDEMF 1172 G+Y RP+ L+ +D +F Sbjct: 1160 GVYFARPDDALLDGLDRLF 1178 >UniRef50_Q60AZ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Methylococcus capsulatus RepID=Q60AZ5_METCA Length = 1200 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 454/1229 (36%), Positives = 619/1229 (50%), Gaps = 101/1229 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD R PL G LIEASAGTGKT+ I LYLRLLL + V+ +LVVTFT A Sbjct: 7 LDVFRCPLAGVNLIEASAGTGKTWNICGLYLRLLL--------EQEREVQNILVVTFTNA 58 Query: 68 ATAELRGRIRSNIHELRIACLRETTD--NPLYERLLEEID---DKAQAAQWLLLAERQMD 122 ATAELR RIRS I E + LR +P L+ ++ D+A Q L A D Sbjct: 59 ATAELRERIRSRIVET-LVYLRGGGGAADPFVTGLVAALEGGFDRALLRQRLERALLAFD 117 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP--LPREIA 180 EAA+FTIHGFCQR L F +G+ F +L++D+++L + DFWRR L R + Sbjct: 118 EAAIFTIHGFCQRALAGTPFAAGLPFALELVQDDAMLAQEVANDFWRRRVAAGGLSRAMI 177 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR-DA 239 + E P+ + L + P P + ++A ++ W+ DA Sbjct: 178 AHLLEAGDDPEKYASLLGHALAKSLSDWRWPEPVEPPDERDEQALLAAFGEARRLWQADA 237 Query: 240 VGELDALIES----SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 G + L E+ +G+ + + K D AW + + ++ F L+ Sbjct: 238 FGIVRLLEEAIDQLNGVSYKAASLETARKGWD---AWFATNDPLAPVEDKVQLFRAAMLK 294 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR-------EKRRRGE 348 TK G TP HP F+A + LLA I+ + L +RE V EKRRR Sbjct: 295 GGTKKGNTTPYHPFFDAAENLLALKDGIQGRLAVARLGLLRELVEHGAEALRAEKRRRRV 354 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 +GFDDML + AL S LA A+R+R+PVA+IDEFQDTDP Q+ IFR ++ + + Sbjct: 355 IGFDDMLWNVHEALTSGCYPWLAPALRSRYPVALIDEFQDTDPLQFAIFRALYLAEGAVS 414 Query: 409 --LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 + +GDPKQAIY FR AD++TY+ AR + YTL N RS ++++ N LF Sbjct: 415 GPVFFVGDPKQAIYGFRNADLYTYLGARHQADREYTLVENQRSVTEVIDACNALFGANPR 474 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQP--AMKMWLMEGESCGVGDYQSTMAQVC-- 522 AF+ + + PV+ K R VF T+P ++WL+ + G ++ + C Sbjct: 475 AFLLEGLEYRPVRPGAKP---RPVFTDVTEPRSPFQVWLLPRDEAGGWLPRTEAVRRCTD 531 Query: 523 --AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 AA+I +Q G G L R +RASDI+VLVR + +R AL L + SV Sbjct: 532 TTAAEIARLIQEGMAGRIRLGE----RALRASDIAVLVRRHAQGRLIRQALARLGVGSVE 587 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 LS + SVF TLEA+E+ +L AV+ P R+ LR+ALAT +MG +AL I ++ DE Sbjct: 588 LS-QASVFHTLEAEEIERILLAVLEPGRDRLLRAALATEIMGCDALTIAGISADEDRLLE 646 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700 ++ F YR++W+ RG PM R L+ +A +LA GERRLT++LH+ ELL +A Sbjct: 647 IMLRFGEYRELWQLRGFGPMYRRLLHDEGVARRVLAQPDGERRLTNLLHLGELLHQAQAG 706 Query: 701 LESEHALVRWLSQHILEPDSNASSQ-QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 L S AL+RWL DS A Q+RLESD++LVQIVTIHKSKGLEYP+V+ P++ Sbjct: 707 LTSPDALLRWLQSR--RRDSAAQEDAQLRLESDQNLVQIVTIHKSKGLEYPVVFCPYLWE 764 Query: 760 FR-----VQEQAFYHDRHSFEAVLDLNAAPESVD------LAEAERLAEDLRLLYVALTR 808 QE YHD S VLD PE+ + E AE LRL+YVALTR Sbjct: 765 GNRGARGKQEGIEYHD-ESGVPVLDFR--PEAKNDPGIKWQRRQEEDAETLRLIYVALTR 821 Query: 809 SVWHCSL--GVAPLVRRRGDKKGDTD---VHQSALGRLLQKGEPQDA----------AGL 853 +V C L GV R G++ ++ A G+ + QDA AG Sbjct: 822 AVQRCYLFAGVYRTKREASASCGESTRSMLNWLACGKDHSPEQWQDAKTRLDPAHIEAGW 881 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE-LNAKTLQRLPGDNWRVTSYSGL--- 909 R +A+ +A A P S E L A+T W S++ L Sbjct: 882 RALPDAI---GVAPMPAIV---VPAMAGPSSGLERLAAQTPPAWIPPGWSTGSFTSLVRA 935 Query: 910 -QQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV 968 + G G D + A++ E L +FPRGA+ GT +H LFE DFT P Sbjct: 936 MEAGGEGRDHDALSLAPALGPPPAALPENDIL---RFPRGAAAGTCIHHLFEQADFTDPA 992 Query: 969 ---DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 D L G E+ +L + VL L + G+ LS++ + E+ F L Sbjct: 993 GWDDAIGRALALRPQGSETAAPAMLKSLLADVLATDLGD-GLRLSEIGRGQRLSELAFRL 1051 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 P +E L +L+ L+R L+F + G L+G IDLVFRH RYYLLD+KSN Sbjct: 1052 P-AEGLDPVRLNALLRDH---GYAMGKLDFRLLSGYLQGAIDLVFRHRSRYYLLDWKSNH 1107 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG 1145 LG Y A+A M A Y LQY LYT+AL RYL R+ Y Y HFGGV YLF+RG Sbjct: 1108 LGYTREDYGPPALAETMAAEGYHLQYLLYTVALDRYLARRLPGYAYTSHFGGVYYLFVRG 1167 Query: 1146 VDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 V G+Y RP IA +D + G Sbjct: 1168 VRPAWRGAGVYFQRPAEDCIAALDALIGG 1196 >UniRef50_B5EPU6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU6_ACIF5 Length = 1198 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 435/1200 (36%), Positives = 618/1200 (51%), Gaps = 84/1200 (7%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAA-FPRPLTVEELLVVTFTE 66 LDPL LPL G RLIEASAGTGKT+TIAALYLR++LG G FPRPL E++LV+TFT Sbjct: 5 LDPLHLPLHGSRLIEASAGTGKTWTIAALYLRMILGHGSEGEHFPRPLLPEDILVMTFTR 64 Query: 67 AATAELRGRIRSNIHELRIACLRETTD----NPLYERLLEEIDD---KAQAAQWLLLAER 119 AAT EL+ RIR + + R T +P E LL + D +A+AA L LA Sbjct: 65 AATQELKERIRDRL-QTAARYFRGTEHPAQPDPFLEALLADHPDPEVRARAAHQLTLAAD 123 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 MD++A+FTI +CQR L +AF +G F + L+ DE+ LR A DFWR+ YPL Sbjct: 124 AMDDSAIFTIDAWCQRTLREHAFATGSDFRETLLLDETDLRDDAVRDFWRQEIYPLGEPA 183 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW--- 236 V + + GP + ++ + + P+ + L A R+ T+K QW Sbjct: 184 LDEVLQLFSGPDKIRQETAALCKLDPPLPAPASRLADWLPDALAAPRRRLATLKAQWAAE 243 Query: 237 RDAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISA----WAEEETNSYQLPESLEK--- 288 DA E L L+ D + A + + A WA+ + +P+ L+K Sbjct: 244 HDAFAEWLSGLVNGPKADNPLNGNTLSAAIVSRALAALRDWADR--SDPLIPDELDKCQR 301 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSI-------RDLVITRALAEIRETVAR 341 S L + K HP E +D L E +I + T A A I ++R Sbjct: 302 LSASKLPEYCKNKPPPVLHPAAETLDTLFRELETIAQQFTRLHGEIRTHAAAWINARLSR 361 Query: 342 EKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 K + G++ F D RL L ++ G LAA +R ++P A+IDEFQDT QY+IF I Sbjct: 362 LKAQSGQVSFADYQRRLARVLHDKTQGPALAARLRQKYPAALIDEFQDTSALQYQIFDDI 421 Query: 401 WH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNS 456 +H + P+T LLLIGDPKQ+IYAFRGADI +Y++AR HY L TN+RS+ +V++ Sbjct: 422 YHAADNNPDTLLLLIGDPKQSIYAFRGADIDSYLQARRLTEGRHYALGTNYRSSHALVSA 481 Query: 457 VNKLFS--QTDD---AFMF------REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 +N +++ + DD AF + +P+ PV++ G + R G+ PA+ W Sbjct: 482 LNAIYTAAEHDDPQGAFAYAAPGADNPLPYQPVQAHGHQKVWRI--HGKAAPALTFW-GA 538 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 GE GDY A A I L + G A G+ R + A DI++LVR R EAA Sbjct: 539 GEKLNKGDYLERCAAQAAECIVGLLDNPEAGFA--QEGEITRRLEAKDIAILVRDRHEAA 596 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 +R AL ++ SV+LS +DSV+ + EA+E+L L+AV PE LR ALA ++G Sbjct: 597 SIRQALHHRQLRSVFLSEQDSVYASEEARELLLWLEAVAEPEDARRLRVALALPLLGQPL 656 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 ++ + +E AW+ +E+F + WR++GV+ ML + IA LL GERRLT Sbjct: 657 SALDAFHQNETAWEAQLEQFQDLSRQWRRQGVLAMLHHSIHQFGIAARLLTQPEGERRLT 716 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 ++LH+ ELLQ+A ++ ALVR L Q I + + +RLESD L+++VTIH +K Sbjct: 717 NLLHLGELLQQASATIDGPEALVRHLHQAIAAGSDQSDAHILRLESDAGLLRVVTIHAAK 776 Query: 746 GLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 805 GL+YPLV+LPFI + + HS E ++ AE RL EDLRLLYVA Sbjct: 777 GLQYPLVFLPFIATCKAARANPFTVIHSAEGQPAIHWESGDTTAAERARLQEDLRLLYVA 836 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ-SALGRLLQKGEPQDAAGLRTCIE--ALCD 862 LTR+ LG+A K T + SA+ LL G + A L T +E A Sbjct: 837 LTRAEHALWLGLA------APKTAGTPIFAGSAIAHLL--GSERTARDLATLLEDCARLS 888 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP 922 +I +T V + A +W V S+S L ++L Sbjct: 889 PEIVVETLPDSIPTTLFVRPRNNAHNPPPEYTASFEKHWGVASFSHL-------VRELPA 941 Query: 923 RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL---DFTQPVDPNWVREKLEL 979 + P H++P+G + GTFLH + L F Q +V E+L Sbjct: 942 DPAAPPTPRRAQAGAPW---HRYPQGMNAGTFLHDQLQRLAQNGFAQIGQDQFV-EQLHK 997 Query: 980 GGFES---QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 ++ W EW+ A++ +PL +L LS + EM F+ P S+ L + L Sbjct: 998 ACTQAGLGDWVGETAEWLQAIVHSPLAPLTAALCDLS--DTLSEMAFWFP-SDALRSDDL 1054 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 D L +Q A P L + GM++GF+DLVF GRYY+LDYKSN LG + + Y + Sbjct: 1055 DRLCQQHIFPGADRPRLPQRVIHGMMRGFMDLVFEQGGRYYVLDYKSNVLGSEDADYHAK 1114 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGI 1155 A+ A HRY+LQ LY LALHR LR R+ Y E H GG ++ FLRG+ + P++G+ Sbjct: 1115 ALRDATLGHRYELQSSLYQLALHRLLRQRMGSRYRPETHLGGTLFFFLRGL--QGPERGV 1172 >UniRef50_C7I4N6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I4N6_THIIN Length = 1202 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 461/1254 (36%), Positives = 647/1254 (51%), Gaps = 139/1254 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEEL 59 M+ + E LD L LPLQG RLIEASAGTGKT+TIAALYLRL+LG G A AF RPL+ E++ Sbjct: 1 MTAIPEPLDALTLPLQGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRET----TDNPLYERLLEEIDDKA--QAAQW 113 LV+TFT AAT EL RIR+ + E C + T D+ RLL+ + Q A W Sbjct: 61 LVMTFTRAATRELAERIRARLVEA-AQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAW 119 Query: 114 -LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHC 172 L +A + MD+AAVFTI +CQRML +AF+SG F++ L+ DE L QA DFWR+ Sbjct: 120 RLAMAAQAMDDAAVFTIDAWCQRMLREHAFDSGHSFDEDLLADEGELTTQAVHDFWRQQV 179 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPP--PDDETLASRHAQI----V 226 YPL V + W AL ++ L+ A APP D++L ++ Sbjct: 180 YPLSGAALDGVLQVWPDVGALEGEVKSRLR--AAQAGAPPVADKDDSLLDLWQRLGEPQQ 237 Query: 227 ARIDTVKQQWRDAVGE----LDALIES--SGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 A++ T+K QW + V L AL++S + + + K+ + W D + AW ++ Sbjct: 238 AQVRTLKAQWAERVASMRQWLCALVQSEVNPLSKNKYGLKSVCGWFDALQAWLDDPAQ-- 295 Query: 281 QLPESLEKFSQRFLEDRTKAG---GETPRHP-LFEAIDQLLAEPLSIRDLVI---TRALA 333 Q P +K + D +AG G+ P +F ++ L A + DLV T A A Sbjct: 296 QQPGLDDKAWAKLTPDGLRAGCNQGKQVEPPAVFNEVEMLRAALADLADLVPELQTYAAA 355 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 ++ + K G+ F D L RLD+AL GE L A I ++PVA+IDEFQDT Q Sbjct: 356 QVDARLRVLKAASGQFSFHDQLERLDAALAGPQGERLRARILEQYPVALIDEFQDTSALQ 415 Query: 394 YRIFRRIWH----HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWR 448 + +F R++ +A+LLIGDPKQ+IYAFRGADI +Y++AR H L TN+R Sbjct: 416 FSVFDRLYSITTAQTTHSAVLLIGDPKQSIYAFRGADIASYLRARQATQGRHSALQTNYR 475 Query: 449 SAPGMVNSVNKLFSQTDD-----AFMFRE---------IPFIPVKSAGKNQALRFVFKGE 494 S +V+SVN+LF + + AF++R+ +PFI V + G+ + L +G Sbjct: 476 STAEVVHSVNQLFERREQSAGAGAFLYRDDEAPDADNPVPFIAVGARGRAEQL-ICSEGP 534 Query: 495 TQPAMKMWLMEGESCGVG-------DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 + +C V D + A AA+I L Q G +G AR Sbjct: 535 ---------VHALTCAVHQALESKRDARERFAAHSAARIVSLLNDTQVG-FRQADGGFAR 584 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 +R SDI+VLVR EA +R AL + SVYLS+RDSVF + EA ++L L+AV P Sbjct: 585 -LRQSDIAVLVRDGDEARAMRRALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPR 643 Query: 608 RENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 R+A A +G ++ L D+ +D + + IW ++GV+PMLR + Sbjct: 644 DGRLARAAFAAPTLGATIAELAALATDDDVFDNRLALLAELQAIWLRQGVLPMLRQTLHR 703 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 ++ L+ GERRLT++LH++ELLQ A L+ E AL+RWL + + + Q + Sbjct: 704 LDLPARWLSEEDGERRLTNVLHLAELLQTASGALDGEQALIRWLQEQM--AGQSTEEQVV 761 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV 787 RLES+ LV++VTIHKSKGLEYPLV+LPF T F+ E+ Sbjct: 762 RLESEADLVRVVTIHKSKGLEYPLVFLPFATAFK-----------------------EAK 798 Query: 788 DLA-EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 D A + ERL EDLRLLYVALTR+ +G+A L +G +H+SA+G LL Sbjct: 799 DGADDRERLREDLRLLYVALTRARHALWVGIAALKVGKGSV---CMLHRSAIGYLLGGDT 855 Query: 847 PQDAAGLRTCIEALCDDDIAWQ---TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 P + A + + D A Q AQ + Q Q + A + NW + Sbjct: 856 PCEGAAIPGLLRETFGDSPAVQIVDAAQEAELQRLQAAHPAQALIEPPNYHAQFERNWSI 915 Query: 904 TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE-----------------PTLTPHQFP 946 S+S L +DL PR A A++ +E P+ H+FP Sbjct: 916 GSFSAL-------VRDLTPRSTQQPALQAALQDELWATEPSMEQPSPATLQPSAARHRFP 968 Query: 947 RGASPGTFLHSLFEDLD------FTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 RGA G F+H L Q N + ++ G+++ L EW++ VL Sbjct: 969 RGALVGKFVHEQLAWLGENGFALSAQQTQDNLL-QRCARQGWDAPRSADLLEWLSEVLAT 1027 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 PL G +L ++ EMEF+LP+ A+++D L +Q P L + G Sbjct: 1028 PLPPLGAALPEID--TLLAEMEFWLPVDRAR-AAEIDALCQQHILPGRARPELTERTLHG 1084 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 M+ GF DLVF H GRY++LDYKSN LG D + YTQQ + AA+ HRYD+Q LY LALHR Sbjct: 1085 MVMGFADLVFHHAGRYWVLDYKSNVLGTDDADYTQQVLEAAVLEHRYDVQCALYMLALHR 1144 Query: 1121 YLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 LR R+ YD + GG I LFLRGV P+ G P+ L+ +D +FA Sbjct: 1145 LLRARLRTAYDPQTQLGGAIDLFLRGV--RGPRSGCVHIPPDGVLLDALDALFA 1196 >UniRef50_C7LVF7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF7_DESBD Length = 1168 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 431/1217 (35%), Positives = 624/1217 (51%), Gaps = 110/1217 (9%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 E +D PL G LIEASAGTGKT+T+ L++RLLL + LTV+++LVVTFT Sbjct: 2 EPMDLCTAPLDGTTLIEASAGTGKTYTLTGLFVRLLL--------EKNLTVDQILVVTFT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRE-TTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 +AAT ELRGRIR + ++ E D L LL AA+ L LA R D A Sbjct: 54 DAATEELRGRIRKRLSDVAGVLAGELEADEELEWDLLARFG-GTDAARRLELALRNFDLA 112 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 +FTIHGFCQRML N FE LF+ QL D S LR Q C DFWR H PL V Sbjct: 113 QIFTIHGFCQRMLGRNGFECSALFDTQLEPDLSDLRRQVCVDFWRSHILPLGGLTGTEVR 172 Query: 185 ETWKGPQALLRDINRYLQGE----APVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + P L G+ P AP P A R A + +K W Sbjct: 173 KQLT-PDHLTEMSGLPFLGQRIRIVPGTLAPDPAPLDRAVREA-----CERLKASWSVME 226 Query: 241 GELDALI--ESSGIDRRKFNRSNQAKWIDKISAWAEE-ETNSYQLPESLEKFSQRFLEDR 297 E+ L+ + + R+F+ + + + + ++ + ++L + + +++ Sbjct: 227 PEVRTLLLARADNFNARQFSPQKLDQRLKATRDFLNDPRLDAKEQLKALGELTSTYVQGM 286 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDL----VITRALAEIRETVARE---KRRRGELG 350 TK P H LF+ I +L + ++R L V+ A + AR KRRR LG Sbjct: 287 TKKAFTAPEHRLFDEIQNILDQVEALRHLLGPFVVHLRHAFLSGVTARLDELKRRRNVLG 346 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-HHQPETAL 409 FDD+L + +AL S L AA RT++ A+IDEFQDTD QY IFR ++ E +L Sbjct: 347 FDDLLRNMHAALASPE---LVAAARTQYRAALIDEFQDTDGLQYDIFRTLFATGDGENSL 403 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA-- 467 LIGDPKQAIY+FRGAD+ TY+ A TL N+RS P ++ +VN+LF + D+ Sbjct: 404 FLIGDPKQAIYSFRGADLHTYLTAADSCERGMTLGVNYRSTPELIAAVNRLFFRPDNPRP 463 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG--ESCGVGDYQSTMAQVCAAQ 525 F+ +I + PV + K + RF G+T M +W ++ + G + + AA+ Sbjct: 464 FLDPKIAYQPVSAPDKERD-RFREDGQTPAPMVLWQVKSADKPLAKGALAPRICRAVAAE 522 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 I L+ G + + P+ DI+VLV + + + AL L IPSV +++ Sbjct: 523 ISRLLRGAAEGRIRIGDA----PLLPGDIAVLVETHAQGEAIHQALGALRIPSV-VTHTS 577 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 SVF + EA E+L +L+ + +R LR+ALA M+GL A D+ ++ D + E F Sbjct: 578 SVFASPEASELLSVLRGMAECQRPAALRTALAAPMIGLTAPDLALIDEDGEKLEEWFERF 637 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL----QEAGTQL 701 R++W +RGVM +R L + +++ + L++ GERR+T++LH ELL +E+G + Sbjct: 638 LACRELWDRRGVMAAVRRLFAGQDVRKRLVSLPDGERRMTNVLHCLELLHSRERESGAAM 697 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNF 760 HAL+ W ++ + + S Q+RL++D+ VQIVTIHKSKGL+YP+V+ PFI Sbjct: 698 ---HALLTWFARRLGTEGTEES--QLRLDTDRDAVQIVTIHKSKGLQYPVVFCPFIFGRA 752 Query: 761 RVQE-QAFYHDRHSFEAVLDLNAA--PESVDLAEAERLAEDLRLLYVALTRSVWHC---- 813 R E +A H+ +LDL P + A +E AE +RLLYVALTR+ C Sbjct: 753 RCPEDRALVHEDG---LLLDLGTEELPRRIGQALSEAQAERVRLLYVALTRAKCRCYAIW 809 Query: 814 -------SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA 866 + G A L + T ++ E A LR L +DDI Sbjct: 810 GRINEAETSGAAWLFHGHRADENSTLSWETV-------DEDMVCADLRV----LANDDI- 857 Query: 867 WQTAQTGDNQPWQVNDVST--AELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 924 + A+ D +P Q T +L + R+ G + + S++GL + G+ P L Sbjct: 858 -EVAELPDAEPKQGPPQFTHAPDLRCRNWDRVLGSGFGLASFTGLTR---GMEHGARPGL 913 Query: 925 D-VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGF 982 D VDA+G A+ +E ++ FP GA+ G+ LH +FE +DF + P V E L GF Sbjct: 914 DEVDASGQAA--DEWSMA--NFPCGAAAGSCLHRIFERIDFADEITIPAAVTEALAAYGF 969 Query: 983 ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 + W + + + VL A L E G+ L + ++K VEMEF P+ P+ L + R Sbjct: 970 DPAWHQTVHDMVKRVLHADLGE-GLQLGGIEQKDKLVEMEFLFPL-RPVTRETLAAVYRD 1027 Query: 1043 FDPLSAGCPP---------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 SAG P L F RG + GF+DLV R ++YLLD+KSNWLG Y Sbjct: 1028 ----SAGLLPPDLPERMGNLRFEPRRGFMTGFMDLVVRSGRKFYLLDWKSNWLGPTPGHY 1083 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ 1153 T A+ AAM Y LQY LY LAL R+L R +DYE FGGV Y+FLRG+D + P Q Sbjct: 1084 TPDALHAAMAGSHYFLQYHLYCLALKRHLALRKPGFDYEKEFGGVRYVFLRGIDPQTPGQ 1143 Query: 1154 GIYTTRPNAGLIALMDE 1170 G++ RP+ + +D+ Sbjct: 1144 GVHANRPDPRFLDALDK 1160 >UniRef50_B1XZ25 Exodeoxyribonuclease V, beta subunit n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZ25_LEPCP Length = 1272 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 449/1283 (34%), Positives = 626/1283 (48%), Gaps = 195/1283 (15%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG----SAAFPRPLTVEELLVVT 63 L+PL LPL G LIEASAGTGKT+TIAALYLRL+LG G + PRPL E+LV+T Sbjct: 4 LNPLTLPLHGSHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVMT 63 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI-------DDKAQAAQWLLL 116 FT AAT EL RIR + E C R + ++ L ++ ++ AA L L Sbjct: 64 FTRAATRELSDRIRERLIEA-ARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLAL 122 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A MD+AAV TI +CQRML +AF+S LF+++L DE+ R QA D+WRR YPL Sbjct: 123 AAEGMDDAAVHTIDAWCQRMLREHAFDSAQLFDEELEADEAGRRRQAVQDYWRREVYPLR 182 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRH--AQIVAR----ID 230 + V W L + L G+ +++ P E L R QI A+ + Sbjct: 183 GAALETVLSLWPEVAELQSQVAGLL-GKLDLLEGVP---EGLGLRDWLGQIAAQRSQELA 238 Query: 231 TVKQQWRDAVGELDALIESSGIDR------RKFNRSNQAKWIDKISAWAEEET-NSYQLP 283 +K W + + I + + +N + W D + AWA + + + Sbjct: 239 QLKAGWVERADFMQGWINQHRTCKPPVLAGARLKSNNVSDWFDALRAWAADPALETLDMG 298 Query: 284 ESL-EKFSQRFLEDRTKAGGETPRHPLFEAIDQL---LAEPLSIRDLVITRALAEIRETV 339 ++ + + + + G P F A QL L + + + + A + + Sbjct: 299 KTAPTRLTPEGIAECFNDGCAVPVPADFAAFAQLMFALGQRAPLHEPLQRHAAFGVARRL 358 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 A KR+ G G+ D++ RLD+AL +GE LA IRT++P+A+IDEFQDT P QYR+F R Sbjct: 359 AALKRQAGRFGYADLVERLDAALHGPAGERLAQRIRTQYPLALIDEFQDTSPLQYRLFDR 418 Query: 400 IWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKAR-SEVHAHYTLDTNWRSAPGMVN 455 ++ ++ +T LLLIGDPKQ+IY FRGADI++Y+KAR + Y L TN+RS +V Sbjct: 419 LYDVAANRADTGLLLIGDPKQSIYGFRGADIYSYLKAREATAERRYMLTTNFRSTAALVA 478 Query: 456 SVNKLFSQTD-----DAFMF-----REIPFIPVKSAGKNQALRFVFKGETQPAMKM-WLM 504 +VN LF Q + AF R +PF PV + G+ + L V G PA+++ WL Sbjct: 479 AVNTLFEQAEAARPEGAFALGKDESRALPFDPVAARGRGEVL--VAGGAALPALQLAWL- 535 Query: 505 EGESCGVGDYQ---STMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRS 560 G G Q +A AAQ+ WL G + GD R +R SD++VLVR Sbjct: 536 ----PGAGQAQVQRRELADHAAAQLVAWLADPTCGWS---EGDAPLRRLRPSDVAVLVRD 588 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 + EAA +R AL + SVYLS++DSV+ + EA ++L L AV P R+A A + Sbjct: 589 QHEAAAIRRALQRRGVHSVYLSDKDSVYASAEAADLLRWLMAVAQPLDGLLARAAYANAS 648 Query: 621 MGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA---T 677 L ++ +DE AWD + +W+++GV+ MLR + A ++ LA Sbjct: 649 WDLGLDELAAHVHDETAWDARLALLQQLHGVWQRQGVLTMLRQTLHALDLPARWLAEGNE 708 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI-----------------LEPDS 720 A GERRLT++LH+ ELLQ A LE E L+RWL+ + + Sbjct: 709 AAGERRLTNVLHLGELLQAASAHLEGEAGLIRWLAAMVRGGGDGAQGGSGMGGSAAAAGA 768 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRH-SFEAV-- 777 + +RLESD LVQ+VT+HKSKGLEYP+V LPF + R A+ RH + E V Sbjct: 769 GGDAHIVRLESDAQLVQVVTVHKSKGLEYPVVMLPFANSAR----AWRKKRHGALEWVDD 824 Query: 778 -----LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 LD PE V AE ERL EDLRL YVALTR+ LG+ R G Sbjct: 825 DGRRALDFAQQPEHVAAAERERLREDLRLFYVALTRARHALWLGIGVPPTGRNGSAGPL- 883 Query: 833 VHQSALGRLLQKGEPQDAAGLRTCIEALCDD-----------DIAWQTAQTGDNQ---PW 878 SALG LL + L + ++ALCD D+ Q + D++ P Sbjct: 884 ---SALGYLLAGDQGLREDSLGSVLQALCDVSDPPATRSVCLDVPAQRVRWRDDRAQPPL 940 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSG----LQQRGHGIAQDLMPRLDVD------- 927 + V AE + W + S+SG L +RG G P D Sbjct: 941 HLPPVFQAEFERR---------WAIGSFSGLVRDLGERGAGAGVPATPHGATDLLRTEQL 991 Query: 928 ------------------------AAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD 963 + A+ + T H FPRGA PG FLH + Sbjct: 992 QEELAQMAQLTQMAAQADGQPAAPSGSRAAAIAGSVPTWHGFPRGALPGNFLHDQLQ--- 1048 Query: 964 FTQPVDPNWVREKLELGGFESQWEPVL--------------------TEWITAVLQAPLN 1003 W+ E+ GFE E + +W+ +L PL Sbjct: 1049 --------WLAEE----GFERAGESGVAAALLRRCERAGHAQHAAGAVDWLQQLLATPLP 1096 Query: 1004 ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLK 1063 G SL+++ EMEF++P S L +++LD + +Q P L Q+ G+L Sbjct: 1097 PLGASLAEVD--RLLPEMEFWMP-SVALRSAELDRICQQHLLPGQPRPALVSRQLDGLLM 1153 Query: 1064 GFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 GF DLVF H GR+++LDYKSN LG + YT A++ AM AHRY+LQ +Y LALHR LR Sbjct: 1154 GFADLVFEHGGRWWVLDYKSNALGATDADYTPAALSQAMLAHRYELQAAIYLLALHRLLR 1213 Query: 1124 HRIA-DYDYEHHFGGVIYLFLRG 1145 R+ DYD GG +YLFLRG Sbjct: 1214 SRLGDDYDPARQLGGALYLFLRG 1236 >UniRef50_Q74CY7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74CY7_GEOSL Length = 1204 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 442/1222 (36%), Positives = 610/1222 (49%), Gaps = 87/1222 (7%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 D L + L G L+EASAGTGKTF IA LYLRL++ G P + +LVVTFTEAA Sbjct: 8 DNLTVELSGHNLVEASAGTGKTFAIACLYLRLVVE--GEGLLP-----DNILVVTFTEAA 60 Query: 69 TAELRGRIRSNIHELRIACLRETTDNPLYERLL--EEIDDKAQAAQWLLLAERQMDEAAV 126 T ELR RIR + + R + +RL E A A + A + D AA+ Sbjct: 61 TKELRARIRQRLRQARDRFAGGGAPDEFLDRLALGERWPGHATALARIDSALQTFDCAAI 120 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 TIHGFC R L NAFESG LF+ +L D+ L Q DFWR H + + + Sbjct: 121 STIHGFCLRALQENAFESGSLFDTELAADQEPLLRQVADDFWRHHFFGADAPLLPLALGR 180 Query: 187 WKGPQ---ALLRDINRYLQGEAPVIKAPPPDDETLASRHA-QIVARIDTVKQQWRDAVGE 242 P+ A LR+I P + P A R A +I + WR E Sbjct: 181 RWSPEELAAFLRNI-----AGKPHLAVEPVWHSGEADRVAGEIRDAFAALSSLWRTQRAE 235 Query: 243 LDALIESS-GIDRRKFNR-----SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 + A++ + G+ R + N +D +A A + Y L +KF+ FL Sbjct: 236 IAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAGA----DPYALFAGFDKFTTGFLAG 291 Query: 297 RTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA--LAEIRETVAREKRRRGELGFDDM 354 + + PRH F+ D+L L+ + L++ +A A RE +A K +R G+DD+ Sbjct: 292 QRLKKADPPRHDCFDLCDRLAR--LTSQRLLLLKAEFAARGRERLAALKAQRNVRGYDDL 349 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGD 414 L+ L +AL G LA +R R+ A+IDEFQDTD QYRIFR ++ L LIGD Sbjct: 350 LTDLHAALGGPGGAALADRLRERYRAALIDEFQDTDQVQYRIFRAVFSGG-AVPLFLIGD 408 Query: 415 PKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFS-QTDDAFMFR 471 PKQAIY+FRGAD+F Y++AR E+ A +T+D NWRS P MV +V+ LF + F+ Sbjct: 409 PKQAIYSFRGADVFAYLEARQEIPAERRFTMDRNWRSTPEMVEAVSSLFRLGGEHPFLAG 468 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPA-MKMWLME-GES---C-GVGDYQSTMAQVCAAQ 525 +I F PV +A + Q F G+ PA +++W GES C +G + + A + Sbjct: 469 DIAFPPV-TAARRQGCSF---GDRDPAPLQLWFFRRGESDRDCINLGTGRQRIVTAVADE 524 Query: 526 IRDWLQAGQRGEALLMNGDD-ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 I L G+ G A L + D +P+ D++V+VRS EA V+ AL IPSV + + Sbjct: 525 ISGLLADGRAGTACLEDEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRERGIPSV-VQSA 583 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 DS+FET EA E+ ++ AV P E +R+AL T++ GLN D+ L E AW+ + Sbjct: 584 DSLFETREAGEVWTVMGAVAEPGNEGRVRAALVTALFGLNGNDLALLMEQEAAWEARIAA 643 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-S 703 F YR +WR++G M M RAL+ + E L GERRLT++ H +E+L +A + Sbjct: 644 FRDYRDLWREQGFMTMFRALLDREGVRERCLPLPDGERRLTNLRHCAEVLHQAAVERRLG 703 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNFRV 762 AL W + + P Q+RLESD V+IVT+H SKGLEYP+V+ PF+ R Sbjct: 704 PDALTAWFGERVSVPPPG-EDYQIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRD 762 Query: 763 QEQAFYHDRHSFEAVLDL--NAAPESVDLAEAERLAEDLRLLYVALTRS------VWHCS 814 + V D + E A E LAE+LRLLYVALTR+ VW Sbjct: 763 DGDLTLCHEEGYRLVADFGTDRRDERQRRARTEALAENLRLLYVALTRARCRAYLVWGKF 822 Query: 815 LGV---AP---LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQ 868 G AP L R D GD + L L+K Q + IA Sbjct: 823 RGAETSAPGWLLHGSRPDGGGDP---VALLEGTLKKATDQTLLERLDHLATASGGGIAVT 879 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL------MP 922 D P + A L + + WRV S++ GH +L P Sbjct: 880 EDPCPDRLPRFRPAMGEAPLVCRDFRGDIDAGWRVASFTSFAS-GHREPAELPDRDQTPP 938 Query: 923 RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLEL 979 L DAA + P + FPRG G FLH LFE LDF D + VR +LE Sbjct: 939 ELPPDAA--SDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLDFAVAGDDTVRDLVRRELER 996 Query: 980 GGFESQWEPVLTEWITAVLQAPLNETGVS--LSQLSARNKQVEMEFYLP---ISEPLIAS 1034 G +QW ++ + VL PL G S L+ L+ + E+EFY P + + +A+ Sbjct: 997 NGHGAQWLDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSWLAELEFYFPLRFVRDAQVAT 1056 Query: 1035 QL--DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 L ++ Q L A + F + RGM++GF+DLVFRH GRYYL+D+KSN LG + Sbjct: 1057 ILAGAGVLPQGADLGAVARRIAFGEARGMVRGFVDLVFRHSGRYYLIDWKSNHLGNRAED 1116 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ 1152 Y + + M+ Y LQY LYT+AL+R+L R+ Y YE HFGGV YLFLRG+D E P Sbjct: 1117 YGPERLCREMERSLYPLQYLLYTVALNRFLERRLPGYRYEEHFGGVFYLFLRGIDPERPA 1176 Query: 1153 QGIYTTRPNAGLIALMDEMFAG 1174 G+Y P L+ + + AG Sbjct: 1177 LGVYHDLPRPDLVRALTDCLAG 1198 >UniRef50_D0KVH3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVH3_HALNC Length = 1259 Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust. Identities = 441/1266 (34%), Positives = 640/1266 (50%), Gaps = 125/1266 (9%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S++ L+PL P G RLIEASAGTGKTFTIA LY+RL+LG G PL ++LV Sbjct: 6 SNMPLPLNPLTFPFAGSRLIEASAGTGKTFTIALLYVRLVLGHGT-----EPLMPPQILV 60 Query: 62 VTFTEAATAELRGRIRSNIHE-LRIACLRETTDNPL--------YERLLEEIDDKAQAAQ 112 TFT+AA ELR RIR+ + E RI + +P+ +++ AA+ Sbjct: 61 TTFTDAAADELRDRIRARLFEAYRIFSEAGSELDPIAVDPYLLDLRAAFPTSEERLAAAR 120 Query: 113 WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHC 172 L +A MDEAA+FTIHG+CQRMLN +AF S LFEQ + + + QA D+WR + Sbjct: 121 RLEMAANWMDEAAIFTIHGWCQRMLNEHAFHSRALFEQTVRTSLTPVVDQAVQDYWRHYI 180 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGE-APVIKAPPPDDETLASRHAQI--VARI 229 Y LP A V GP AL + +N L + AP+ P D A + +A + Sbjct: 181 YALPPAQALSVANLLGGPSALTQKLNGLLSRDGAPLFVDGKPVDPAALDFFAMVADIAEL 240 Query: 230 DTVKQQ--------WRDAVGEL-DA----LIESSGIDRRKFNR-SNQAKWIDKISAWAEE 275 DT QQ W L DA + SG R ++ ++ + D + WA+ Sbjct: 241 DTQAQQAEQDARQAWSKHAETLKDAWLPIMSALSGTSHRTLSKLTDFSTLWDSLDLWAQ- 299 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHP---LFEAIDQLLAEPLSIRDLVITRAL 332 LP + KF + + E P HP +F A + R+ R L Sbjct: 300 --TGEPLPIDVFKF---LTQPKFNKKLERPFHPALAVFSAWPVAMEAARHGREQSAIRLL 354 Query: 333 AE----IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQD 388 A +R+ + ++ E+GFDD+L LD AL G+ LA IRT+FPVAMIDEFQD Sbjct: 355 AHAAFWVRDRIDTVLQQNAEMGFDDILLNLDRALTGAEGQQLADTIRTQFPVAMIDEFQD 414 Query: 389 TDPQQYRIFRRIWH--HQPETA-----LLLIGDPKQAIYAFRGADIFTYMKARSEVHA-H 440 TDP QYRIF R++ E A ++LIGDPKQ+IY FRGAD+F+Y+ AR H Sbjct: 415 TDPLQYRIFDRVFRIGGNGEAAGQAGTMILIGDPKQSIYRFRGADMFSYLAAREATQGRH 474 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTD----DAFMFRE-----IPFIPVKSAGKNQAL-RFV 490 YTLD N+RS P +V +VN +F + D AF + +PFI V + GK + L R Sbjct: 475 YTLDANYRSTPELVAAVNYVFERADRQPSGAFGHKTDEGNPLPFIRVSARGKARRLQRRN 534 Query: 491 FKGETQPA--MKMWLMEGESC-GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA- 546 GE QP + W + +S G + MA+ A I L A Q G+ + + A Sbjct: 535 EAGEWQPCPPLTGWALPRDSLLAAGHFVEQMAEHTAEAITSSLNAAQVGDCAFFDAEGAM 594 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 +R DI++LV + +AA ++ +L I SVYLS+R +F T EA + L A+ P Sbjct: 595 TALRPQDIAILVSTGDQAAVLQQSLIRRGIKSVYLSDRHRLFATEEAADFHRWLLAIAEP 654 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 +R++ LR+AL +S + +++ + ND D F Y++I R +G++ + LM Sbjct: 655 QRQDRLRAALGSSSFARHWGELDAVRNDAR-LDEDTSRFMAYQRITRHQGILAAVYQLMH 713 Query: 667 ARNIAENLLATA----GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 +I LLA GERRLT++LH+++ Q QL AL++ +Q + N Sbjct: 714 DYHIPARLLAAPLPDRSGERRLTNLLHLADWAQNEQAQLAGLDALLQRYAQAV---SDNE 770 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD----RHSFEAVL 778 + ++RLE D+HLV+I+TIH +KGL+YP+V+LPF+ R +E R S + Sbjct: 771 AEHELRLEQDEHLVRIITIHSAKGLQYPVVYLPFLPLIRPKEANKNSTATPWRTSTGRGM 830 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 L PE++ ++ E +RL+YVALTR+ C+L + P+ G + H+S L Sbjct: 831 SLGEFPEAIAAEHEAQMTESVRLIYVALTRAESACTLALGPVKFGAGKQPNQ---HESGL 887 Query: 839 GRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-----AKT 892 G +L+ +G + A + D+ Q T + P + A + A+T Sbjct: 888 GHVLRLQGNDEFIASFEAALT-----DLDAQAGVTIEPPPSITHARFVAPVEDSLPPART 942 Query: 893 LQRLPGDNWRVTSYSGLQQRGH----GIAQDLMPRLDVDAAGVASVVEEPTLTP--HQF- 945 +R +WR++S+SGL H + + D VEE P H+F Sbjct: 943 AKRRVDSHWRISSFSGLTHALHESDVAVPETAKQEQLRDVLSQTGTVEESLDLPQTHRFD 1002 Query: 946 -----------PRGASPGTFLHSLFE---DLDFTQPVD----PNWVREKLELGGFESQWE 987 PRG + GT LHSL E + F Q + N VR+ L E Q + Sbjct: 1003 PQSLSARISHLPRGTTFGTLLHSLLERAGEAGFNQSANFEFSLNLVRQ-LASTLTEDQ-Q 1060 Query: 988 PVLTEWITAVLQAPLNET-GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 L E + +L L T L+ +S Q+E EF+LP+++ +S +D L+ Sbjct: 1061 STLAELVLRILTLSLVTTPSRRLADVS--RYQIEQEFWLPVAQTQTSS-IDALLCAHVHP 1117 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 P L + G +KGF+DLVF +GR+Y+LDYKSNWLG+ Y + + AM A R Sbjct: 1118 GQMRPLLTAQYLEGQIKGFMDLVFEADGRFYILDYKSNWLGDSPEDYAPEHLVDAMLAAR 1177 Query: 1107 YDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIA 1166 YDLQ LY ALHR+L+ R+ +YD H GG +YLF+RG+D P QG+Y + N +IA Sbjct: 1178 YDLQMVLYLTALHRHLQDRLPNYDPAVHLGGALYLFVRGIDS--PGQGVYFSPANPTVIA 1235 Query: 1167 LMDEMF 1172 MD + Sbjct: 1236 AMDALL 1241 >UniRef50_A8ZX09 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX09_DESOH Length = 1203 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 425/1220 (34%), Positives = 602/1220 (49%), Gaps = 100/1220 (8%) Query: 6 ETLDPLRLPLQG--ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 E D L L G L+EASAGTGKT+ I L+LRL+ V+ +L VT Sbjct: 5 EPFDILCADLSGGITTLVEASAGTGKTYAIVGLFLRLIAETDAG--------VDNILAVT 56 Query: 64 FTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEIDD-KAQAAQWLLLAERQM 121 +TEAAT EL+G+IR+ + + A T + +PL + LL++ + +A AA+ L A Sbjct: 57 YTEAATQELKGKIRTALRKAATAFKTGTMSGDPLIDGLLKKRETTRAVAARRLKRALEAF 116 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL-PREIA 180 D+AA+FTIHGFC RML AFESG+LF +++ ++ L Q DFWR+ Y P + Sbjct: 117 DQAAIFTIHGFCSRMLGEFAFESGVLFGAEMVTNQDELVQQVARDFWRQRFYGASPLFLD 176 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA--RIDTVKQQWR- 237 V E R +N ++ P ++ P DET+ + + ++ V QW Sbjct: 177 YAVGEKGLCVDTFTRLLNNWMV--FPDLRVVPGADETVDTAALEAAFAASLEQVAAQWTA 234 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 D + L+ S G+ R + + W ++ A+A E +KF+ + + Sbjct: 235 DKAAVQEILLNSGGLRRNLYRADWLSGWFLRMDAYAGPREGLPSEFEQFKKFTTTGIAEG 294 Query: 298 TKAGGETPRHPLFEA------IDQLLAEPLSIRDLV-ITRALAEIRETVAREKRRRGELG 350 TK+GG HP F+ I Q L R V +R L E R+ + +K+R Sbjct: 295 TKSGGTVAHHPFFDTCQQHMEIRQALTGAFDRRIAVEKSRFLGEARKALDAQKQRLNIRY 354 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 FDD+L LD L S++ L R R+ +IDEFQDTDP QYRIF ++ Q +AL Sbjct: 355 FDDLLLNLDRVLVSDARTGLIEKARHRYRAVLIDEFQDTDPLQYRIFSSLF--QGASALF 412 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 IGDPKQAIY FRGAD+F Y++A V TL NWRS G+V VN LF F+F Sbjct: 413 FIGDPKQAIYGFRGADVFAYLEAVPGVDVACTLAENWRSRAGLVTGVNTLFQAVAAPFVF 472 Query: 471 REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCA----AQI 526 EI F P A Q R G A+++ LME + ++ Q+ A AQ Sbjct: 473 DEINFAPAAPASGAQIPRLTIDGNEPAALELRLMESDDFSTKTQKAAWIQLVARDTAAQA 532 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 + G+ +A L GD RP+ A D+++LVR EA V++AL+ L + S L D Sbjct: 533 ARLVALGREQKAWL--GD--RPLAAEDMAILVRRNTEAILVQEALSRLNVHSTILKAGD- 587 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 +F + EA EM LL AV + ++ A AT MMG +A I L+ + D VVE F Sbjct: 588 LFGSHEAFEMQVLLSAVAFAHDLSLVKGACATQMMGHDARRIAGLSLEADTTDPVVERFL 647 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHA 706 YR +WR+ G M M L+ + L+A GERR T++ H++ELL T LE+ + Sbjct: 648 SYRDLWRRHGFMKMFSRLLRREEVLPRLMAFPDGERRCTNLFHLAELLHR--TALEAHYG 705 Query: 707 ---LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 LVRWL + Q+RLESD V+I+TIHKSKGLEYP+ + P++ + Sbjct: 706 PERLVRWLMRQRTGLQGRNEEHQLRLESDDSAVKIITIHKSKGLEYPVTFCPYLWTGTPR 765 Query: 764 EQ-----AFYHDRH--SFEAVLDLNA--APESVDLAEA---ERLAEDLRLLYVALTRSVW 811 A + R S VLDL + A D E E L+E++RLLYVALTR+ Sbjct: 766 TAGGDGVACHEPREDGSLSMVLDLRSGDAEGVADRRERWYRETLSENMRLLYVALTRAKN 825 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 C + V P +K D S L LL GE AG I A + +A Q+ Sbjct: 826 QCYVSVVP-------EKADG----SPLAALLGTGE----AG----ISADALERVAGQSGG 866 Query: 872 TGDNQPWQVNDVSTAELNAK--------TLQRLPGD---NWRVTSYSGLQQRGHGIAQDL 920 + D+ A L+A+ + +R PG +WRV S+S +++ G D Sbjct: 867 SIHVTRVGPADLHAAPLSAEDGGAEAKLSCRRFPGTIAADWRVASFSAMRRSFSGTEADH 926 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW----VREK 976 + D ++ P QFP GA G F+H +FE LDFT DP + V + Sbjct: 927 VAADDGGVTPDPELLSAPYTGIAQFPAGARAGLFMHEVFEYLDFTN-ADPVYREELVSRE 985 Query: 977 LELGGFESQWEPVLTEWITAVLQAPL----NETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 L F+ QW + + + VL PL GV L + + E+EF+ P+ + Sbjct: 986 LSRYNFDRQWRGPVCDMVDRVLSTPLPPVSGGEGVRLDSVPMDCRINELEFFFPL-RSVS 1044 Query: 1033 ASQLDTLIRQF------DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 L RQ D S L F RG+++GF+DLVF GRY+++D+KSN L Sbjct: 1045 PESLAAAYRQAGAGPGNDRFSHALKALAFSPARGVMRGFVDLVFFSAGRYFIVDWKSNLL 1104 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 G + +Y+Q + M+ Y LQ LY +AL++YL R+ YDY FGGV Y+FLRGV Sbjct: 1105 GPNPESYSQTRLREVMEKEFYLLQAHLYAVALNQYLSARLPAYDYASDFGGVYYVFLRGV 1164 Query: 1147 D-KEHPQQGIYTTRPNAGLI 1165 D P GIY P+ L+ Sbjct: 1165 DPAAGPDYGIYRETPSVELM 1184 >UniRef50_C3X2X2 ATP-dependent exoDNAse beta subunit n=2 Tax=Oxalobacter formigenes RepID=C3X2X2_OXAFO Length = 1253 Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust. Identities = 438/1270 (34%), Positives = 629/1270 (49%), Gaps = 140/1270 (11%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D PL G RLIEASAGTGKT+ I LYLRLLL + V E+LVVTFT A Sbjct: 7 FDVFSCPLYGWRLIEASAGTGKTWNIGGLYLRLLL--------EKKREVREILVVTFTRA 58 Query: 68 ATAELRGRIRSNIHELRIACLR---ETTDNPLYERLLEE----IDDKAQAAQWLLLAERQ 120 AT ELR RIRS I +A L TD+ E+LLE+ DD + L LA + Sbjct: 59 ATDELRDRIRSRIGRA-LAYLEGRAADTDDGFVEKLLEKRMAAGDDPQEMTALLRLAFQS 117 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP--LPRE 178 D+AA+FTIH FCQR L L+AF SG F + D+S L +A DFWRRH L Sbjct: 118 FDQAAIFTIHSFCQRALALSAFSSGQAFSVKAEADDSELVREAVNDFWRRHVAGGRLSPA 177 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAP---PPDDETLASRHAQIVARIDTVKQQ 235 ++ + + P L + R+L +K P P E ++ A Sbjct: 178 LSAWLEKKRFTPDRLEALLRRHLARPLATVKWPETAPEAPEAAEDGSGKLEATFHMAASC 237 Query: 236 WRDAVGELDALIESSG----IDRRKFNR---SNQAKWIDKISAWAEEETNSYQLPESLEK 288 W + AL++ + + R ++ + A+ D+ A N++ + + K Sbjct: 238 WTSEKETVKALLKDAAERNVLYRNRYKAPAIESAARAFDRFFA----AGNAFAMIGNTAK 293 Query: 289 ---FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPL-------SIRDLVITRALAEIRET 338 + L TK G PRHP F D+L+ + R ++ R LAE + Sbjct: 294 TELMADTRLSGSTKKGQTVPRHPFFGMADRLIETCRKRENALEAARYGLLKRFLAEATVS 353 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 + +KR R + FDDML+ L AL LA A+R +FP A+IDEFQDTDP QY IF Sbjct: 354 LKEKKRERRTIAFDDMLANLYEALNDPGMPWLAEAVRMQFPAALIDEFQDTDPLQYAIFS 413 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNS 456 + + +PE+ + L+GDPKQAIY+FR AD+ TY AR + A Y+L N RS P ++ + Sbjct: 414 AV-YREPESPVFLVGDPKQAIYSFRNADLHTYFAARENLDALARYSLAENHRSVPELIAA 472 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ---PAMKMWLM---EGESCG 510 N LFS AF+ + F+PV+ + + G+ PA+ +W++ GE Sbjct: 473 CNTLFSVNKRAFLQDGLDFVPVRPGKRELPVLTDESGDGPGPFPALCVWMLGQENGEWLK 532 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDA 570 + + A ++ + AG+ G+ L + G RP A D++VLVRS +EAA VR A Sbjct: 533 RSAARKQALEAMADEVARLINAGKAGK-LAIGG---RPAGAGDVAVLVRSHREAAMVRQA 588 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L I SV LS ++SVF++ EA+E+ LL A++TP+ E+ L +A++T M+GL+A IE Sbjct: 589 LARRGIGSVSLS-QESVFQSREARELECLLFAMLTPDDESLLMAAVSTEMIGLDAGAIEA 647 Query: 631 LNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHI 690 L DE A + F YR+ WR+ G LR L+ + LLA A GERRLT+++H+ Sbjct: 648 LAGDEAALSGWIGRFGQYRRAWRENGAACALRWLIHREGVVSRLLAFADGERRLTNLMHL 707 Query: 691 SELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 EL+ +E+GT+ + +L+RW ++ A +++RLE+D+HLVQ++T+H+SKGLE+ Sbjct: 708 LELVGRESGTE-NAPDSLMRWYAERREG-KKKAEEEELRLETDRHLVQVMTLHRSKGLEF 765 Query: 750 PLVWLPFI-TNF-----RVQEQAFYHDRHSFEAVLDLNAAP----ESV-DLAEAERLAED 798 P V+ P + NF E YH+ H+ V+D E+V A ER AED Sbjct: 766 PFVFCPLLWDNFPRRGNETGEGLEYHEGHA--TVVDYRKLADDEQETVRKNAALERAAED 823 Query: 799 LRLLYVALTRSVWHCSLGVAPLVR--RRGDK--KGDTDVHQSALGRLLQKG--------- 845 +RL+YVALTR+V+ C L VR RRG+ K T+ +S L L+ Sbjct: 824 MRLIYVALTRAVYRCYLVAGCYVRVTRRGESETKTTTESRKSLLNWLVAGDGFAPPDWLA 883 Query: 846 -------------EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 EP+ + + C IA +D + L A Sbjct: 884 AKDGKKEETVLLPEPEQIGSAWESLASRC-PHIAVTALPDSVGATVDASDETATLLTAAR 942 Query: 893 LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA----AGVASVVEE-PTLTPHQ--- 944 + G WR+ S+SGL + A D D D AG++ + E P P Sbjct: 943 FDKTVGTGWRMNSFSGLMRN----AVDDTETGDHDERALFAGLSGLSENRPEALPANDIL 998 Query: 945 -FPRGASPGTFLHSLFEDLDFTQPVD------------PNWVREKLELGGFESQWEPVLT 991 FP+G G+ LH++FE+ DFT P V KL G E Q VL Sbjct: 999 LFPKGTYAGSCLHAVFENADFTDESTWEKAVESALKQFPQRVGGKLLSGAEEGQ--AVLK 1056 Query: 992 ----EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 1047 + + V+ PL + G+ L + + E F L + L A +L+ L+++ Sbjct: 1057 GRALKMLGDVMATPLPD-GICLGNVGNGRRLTEWPFCLAAAR-LSAKRLNRLVKK---SG 1111 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 P L F + L GF+DLVF +GR+YLLD+KSN LG Y + M H Y Sbjct: 1112 YAVPELAFDDMTAYLNGFVDLVFEMDGRFYLLDWKSNHLGYRPEDYGIARIETEMAEHGY 1171 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV-----DKEHPQQGIYTTRPNA 1162 QY LYT+ALHRYL R+ DYDY HFGGV YLF+RGV + + G++ +P Sbjct: 1172 HWQYLLYTVALHRYLSGRLPDYDYGRHFGGVFYLFVRGVRPDWKNGDGTPSGVFFHKPGQ 1231 Query: 1163 GLIALMDEMF 1172 + +D + Sbjct: 1232 ETVEAIDRLL 1241 >UniRef50_B8FB94 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB94_DESAA Length = 1167 Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust. Identities = 400/1200 (33%), Positives = 594/1200 (49%), Gaps = 99/1200 (8%) Query: 14 PLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELR 73 PL+G LIEASAGTGKT+T+ +LY+RLL+ G L V+++LVVTFT AAT EL+ Sbjct: 11 PLEGVNLIEASAGTGKTYTLTSLYIRLLIEKG--------LLVDQILVVTFTVAATQELK 62 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 RIR+ + R A + D+ L + +++E + Q+ + A R+ DEAAVFTIHGFC Sbjct: 63 DRIRNRLKIARDAFDGKEVDDDLVQAVVKE-HNNPQSRLRVEDAIRRFDEAAVFTIHGFC 121 Query: 134 QRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 QR+L NAFESG F+ +L D + DFWRR Y P I + P+ Sbjct: 122 QRVLGENAFESGASFDAELATDNQDFLMEIARDFWRREFYEAPELIIAYAMHRTRTPEYY 181 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGID 253 R + + P I+ P ++ S A V W + ++ A+ ES + Sbjct: 182 ARLLE--YAAKYPGIRIIPQAEKPEFSALDGFKAARKKVADAWPANLDQVLAVFESGDLK 239 Query: 254 RRKFNRSNQAK---WIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF 310 ++ + + K + + + + + L + F ++ K G E P+ F Sbjct: 240 ANQYGKPDSGKAQVFAQAMDDYLQAGEPGFPLFPQFKYFCADTVQKAGKKGCEIPKLDFF 299 Query: 311 EAIDQL------LAEPLSIRDLVITRALAEIRETVAREKRRRGELGF-DDMLSRLDSALR 363 +L + L L + + + E E++ + F +D++ AL Sbjct: 300 NDCQELQEAGEEMERELEQYLLYLDQEVFRFAEKAEPERKTAKNIRFFNDLVLGFQKALS 359 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 G LA A+R ++ A+IDEFQDTD QY IF ++ + AL LIGDPKQAIY FR Sbjct: 360 GPMGPALADAVRKKYQAALIDEFQDTDAAQYDIFYNLFAGR-RQALFLIGDPKQAIYGFR 418 Query: 424 GADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK-SAG 482 GAD+F+Y++A V Y+L+ NWRS+P ++ VN +FS+ AF+ I F V+ G Sbjct: 419 GADLFSYLQASRNVEESYSLENNWRSSPQLIRGVNAVFSRNPQAFVLDGIEFKSVRPKPG 478 Query: 483 KNQALRFVFKGETQPAMKMWLM---EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 N AL KG+T P +++W + E ++ +G+ Q+ + A+++ L G+ Sbjct: 479 VNPALPLE-KGQT-PPLEIWAVAPKEDKAVTIGEVQNIAVRAVASEVSRLLGLGE----- 531 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 SDI+VLVRS +A VRD L + SV L+ +FET EA E+ + Sbjct: 532 ---------YSPSDIAVLVRSNMQAQAVRDGLRQAGVHSV-LNRTGDLFETPEAVEIRRV 581 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 + A +N +++AL+ S +G A +++ L E + V+ F +IW+K G M Sbjct: 582 MTAAAANRLQN-VKAALSVSFLGWTAEELDRLAPGEEVVEKVLTLFSDLHEIWQKSGFMR 640 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEP 718 M M + + +L GERRLT+I+H++E+L +A + + L++WL + + Sbjct: 641 MFTYFMHNKELPSAVLTLPEGERRLTNIMHLAEVLHQAEKERKLGVSGLIKWLDRQMDLS 700 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI---TNFRVQEQAFYHDRHSFE 775 Q+RLESD VQ+VT+H SKGLE+P+V+ PF+ + R +HD E Sbjct: 701 SPRKDEHQLRLESDAQAVQVVTMHGSKGLEFPVVFCPFMWQESEPRKGTPLTFHDPDQDE 760 Query: 776 AV-LDLNA--APESVDLAEAERLAEDLRLLYVALTRSVWHCSL---------GVAPLVRR 823 + LDL A +P + A+ E +AE++RL YVALTR+ C + AP Sbjct: 761 RLTLDLRAEDSPHR-EQAKLENVAENVRLAYVALTRAKDRCYMLWGAINKAQTSAPAYLL 819 Query: 824 RGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE-ALCDDDIAWQTAQTGDNQPWQVND 882 G D V + L + + A G I L ++I G P Sbjct: 820 HGGAVNDGRVEIRLNYKTLFEDLEELAKGAENAIALTLPPEEIYPAAFAAGGANP----- 874 Query: 883 VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTP 942 L A + P W VTS+S L G + P D AA V E Sbjct: 875 ----ALEALEFKARPDLTWSVTSFSALSMDQPGRNE---PGADEAAAPGPQVEIEDEPEE 927 Query: 943 HQ-----FPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQWEPVLTEWI 994 FPRG PG LH +FE+LDF + V++KLE+ GFE QW + + Sbjct: 928 EAADIFAFPRGIGPGIMLHDIFENLDFLDHAPKKVLDLVQDKLEVYGFEDQWAQPVAGMV 987 Query: 995 TAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP 1052 VL PL + +LS++ + EMEFY PI + + F+ + P Sbjct: 988 QNVLFCPLEKERPDFTLSRIPMTARSNEMEFYFPIKK--------ITPKAFEGIFGNGLP 1039 Query: 1053 ------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 L F V+G + GF+D+VF +GRYY++D+KSN LG Y +++A AM H+ Sbjct: 1040 KDRPDRLHFSPVKGFVHGFMDMVFCFDGRYYIVDWKSNHLGNAPEDYGPESLAHAMVHHK 1099 Query: 1107 YDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPNAGLI 1165 YDLQY LYTLAL +L RI DYDYE HFGG+ Y+FLRGVDK P+ GI+ RP +I Sbjct: 1100 YDLQYLLYTLALDLHLAQRIKDYDYEKHFGGIFYIFLRGVDKSLGPEYGIFQDRPGLDMI 1159 >UniRef50_Q3B472 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pelodictyon RepID=Q3B472_PELLD Length = 1203 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 428/1228 (34%), Positives = 624/1228 (50%), Gaps = 94/1228 (7%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ +PL G LIEASAGTGKT I +LYLRL++ L + +LVVT+TEA Sbjct: 5 LEHASVPLSGMNLIEASAGTGKTHAIGSLYLRLVV--------EESLLPDSILVVTYTEA 56 Query: 68 ATAELRGRIRS----NIHELRIACLRETTDNPLYERLLEEIDDKA------QAAQWLLLA 117 A+ ELRGRIR +H LR D ++ L EI A +AA+ L A Sbjct: 57 ASGELRGRIRDRIRDTLHALR--------DPQCSQQALLEIGSAAVAVGVEEAARRLEGA 108 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 D AAV TIH FC R L +AFESG L++ L D+ L DFWR+ + Sbjct: 109 LGSFDTAAVHTIHAFCLRALQDHAFESGSLYDTALGADQHELLQGIVEDFWRQRFFSPES 168 Query: 178 EIAQVVFETWKG---PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 ++ + WK P++ R ++ G I+ P E A+ A+ Sbjct: 169 PLSGYI--GWKKDVTPESFTRLLSSLRPGPFTCIR-PDYPPEEPAAAEARCTEAYRAAAG 225 Query: 235 QWRDAVGELDALI-ESSGIDRRK--FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 W+ + +++ + +G+ R + + +++ A+ E + + E+F+ Sbjct: 226 MWKQERALIVSILNDDAGLSRAAGAYKKEELILLFERMDAYLES-GSVFDCFTGFERFTS 284 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 L K E P H F+A + LL E ++ + + R + R K F Sbjct: 285 ASLRANMKKKYEAPVHRFFDAAEALLRELDLRLLVLKSELVRYYRSVLPRRKEELNVRLF 344 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLL 411 DD+L+ L AL +E G L +R+ +P A+IDEFQDTDP QY IFR I+ + L L Sbjct: 345 DDLLTDLYLALEAEGGGRLGEVLRSSYPAALIDEFQDTDPVQYEIFRMIYAGS-DLPLFL 403 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 IGDPKQAIY+FRGAD+F Y+KA + V +TL+ NWRSAP ++ N LF + + F+ Sbjct: 404 IGDPKQAIYSFRGADLFAYLKAAASVDGDCRFTLEKNWRSAPLLLEGFNTLFLKGPNPFL 463 Query: 470 FREIPFIPVKSAGKNQALRFVFKGETQP-AMKMWLMEGESCGVG-----DYQSTMAQVCA 523 + I + PV S G F + + P +++WL++ G + A A Sbjct: 464 YPGIAYRPVSSGGGGPRDPFTHEDDRHPEPLQLWLLDARDAKNGCLTVEAAEEMAAAAVA 523 Query: 524 AQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSN 583 +I L + G+A + GD P+ ASD++V+VR+ +AA+V AL +P+V S+ Sbjct: 524 GEIVRLLGDARAGKARI--GD--VPLAASDMAVIVRTHLQAAKVHAALRARGVPAVMQSD 579 Query: 584 RDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVE 643 R SVF + A E+L LL+A++ P E +RSAL T+++G I L+ D W + Sbjct: 580 R-SVFLSPVAGEVLLLLEALLHPSSEGRIRSALVTTILGRTGNVIAALSADGEEWIACLR 638 Query: 644 EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLE 702 +F + Q+WR +G M M RA M + +LA GG+R LTDILH ELL Q T Sbjct: 639 DFAQWNQLWRTQGFMAMTRAFMRKEGVRRRVLAREGGQRTLTDILHCFELLHQHEHTSNA 698 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--TNF 760 AL+ W S+ L+ + + QMRLE+D+ V+IVT+H SKGL+YPLV+ P++ + Sbjct: 699 GPEALLAWFSERCLDTTGSEDAYQMRLETDEAAVKIVTVHVSKGLQYPLVFCPYLWKGST 758 Query: 761 RVQEQAFYHDRHSFEAVLDLNAA--PESVDLAEAERLAEDLRLLYVALTRSVWHC----- 813 +E A +HD S EAV D + P+ + A E +AEDLRL YVALTR+ C Sbjct: 759 STKEVAAFHDA-SGEAVRDFGSPGFPDGMLRAGEEAMAEDLRLFYVALTRAEHRCCFISA 817 Query: 814 --SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD---IAWQ 868 S GV+ L + + A RLL+ E + + AL ++ + ++ Sbjct: 818 RVSGGVSALNYLLHAGESVQERVAGAPERLLEAMEASSPLRMEADLRALAEESRGAVGFR 877 Query: 869 TAQTGD----NQPWQVNDVSTAELNAKTLQRLPG---DNWRVTSYSGLQQRGHGIAQDLM 921 D P +D S A + L+R G +WRV+S++ ++GH + + Sbjct: 878 LLTQDDLLRAALPAPKDDGSGA--IGQNLRRFSGRIDSSWRVSSFTSFSRQGHRPQE--L 933 Query: 922 PRLDVDAAGVA---SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE--- 975 P D A+G +V E FPRGA G F+H +FE +DF+ P DP +R+ Sbjct: 934 PDRDETASGSLPQDTVSTEDAEGIFAFPRGAKAGLFMHEIFEHIDFSAP-DPLAIRKLVD 992 Query: 976 -KLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLI 1032 L+ G+E +W +T + VLQ PL E L L + E+EF++P+S L Sbjct: 993 TSLQRYGYEPKWSDAVTGMVEGVLQMPLGEGEDPFRLGALQPGSWVSELEFFMPMSL-LQ 1051 Query: 1033 ASQLDTLIRQFDPLSAGCP------PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 L +R+ + G LEF GML GF+D+VF GR++LLD+KSN L Sbjct: 1052 TEALQNPLRRHGLMPEGADYRKLADSLEFQPATGMLLGFMDMVFEAGGRFWLLDWKSNHL 1111 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 G +S Y Q M AAM+ HRY LQY Y AL+R+L R+ Y Y HFGGV+Y+FLRGV Sbjct: 1112 GNRASDYAQDGMEAAMEEHRYHLQYLFYLSALNRHLTLRVPGYTYRTHFGGVLYVFLRGV 1171 Query: 1147 DKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 D + G+Y RP AGLI + AG Sbjct: 1172 DGKGRGTGLYRVRPPAGLIEELTLAIAG 1199 >UniRef50_Q057F5 Exodeoxyribonuclease V, b chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F5_BUCCC Length = 1167 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 324/1172 (27%), Positives = 621/1172 (52%), Gaps = 16/1172 (1%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ +P G LIEASAGTGKTF+I YLRL+L +G ++ P+ ++++L+VTFTE Sbjct: 6 LNTKEIPHFGITLIEASAGTGKTFSIIIFYLRLILNIGIKKSYSSPIPIKKILIVTFTET 65 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A EL+ R+ I +L + + + +EI D + ++ L A++ +D+ ++ Sbjct: 66 AKNELKERLYKKICQLYYMSINKNYYVKDLKDFKKEIKDFKKISKLLKKAKKNIDQINIY 125 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIH F +++L F Q +I + ++++A DFWR++ Y EI +++F+ W Sbjct: 126 TIHSFFRKILIEQKFLCKKKIYQNIITNIKKIQFEATKDFWRKYVYYQNIEIIKLIFKKW 185 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 K P L + I ++ IK +L ++ I+ I+ K+ W+ ++ LI Sbjct: 186 KNPLELFKHIYIWISQIKIKIKHDFKKKSSLIKKYNLIIKLINKAKKTWKIDKKKIKFLI 245 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH 307 + ++++K N+ W KI W+E++T Y +P+ L+ F K + + Sbjct: 246 KKIYLNKKKNNKKKIKIWCKKIQIWSEKKTIKYSVPKILKHFI-------LKKIKKKKEY 298 Query: 308 PLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG 367 F I ++ I AL +I + + ++K+ + L F+D+ + + ++ + Sbjct: 299 LFFLYIKKIFFYYKLFFKYFIYLALKKIPKLIKKKKKMKKGLEFNDLNTIMWKEIKKKKI 358 Query: 368 EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADI 427 ++ ++ ++MIDE QD D Q+ IF +I+ + + +L+LIGDPKQ+IY+FR ++I Sbjct: 359 NYKKNILK-KYTISMIDECQDIDNYQFNIFYKIYKKKKKKSLILIGDPKQSIYSFRNSNI 417 Query: 428 FTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 F Y+K + ++ + L N+RS+ M S+N LFS+T + F+F++I F P + KN Sbjct: 418 FLYLKYKKKIQKCFFLKKNFRSSINMTKSINTLFSKTKNPFIFKKINFQPSLANKKNNKN 477 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL-QAGQRGEALLMNGDDA 546 + V TQPA+K ++ +Y + ++++CA I + L + ++ Sbjct: 478 KLVINNITQPALKFIFKNKKTINKNEYFTWISKMCAYSINNLLSNKSTKKSFIIFKNKKK 537 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R ++ +DI++LV+++ EA ++ I ++Y S + ++F+T EA+E+L++++++ Sbjct: 538 RSIKNTDIAILVKNKYEANIIKKEFKKYGIKTIYTSEKKNIFQTKEAKEILFIIESLSDL 597 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 L+ L T + N DI ++NN + + ++++ Y IW+K+ + M + ++ Sbjct: 598 SNILKLQKLLMTKIFSKNIYDIYSINNKKKTYSSLIKKLKKYYLIWKKKNIFFMFKKIIF 657 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD--SNASS 724 + + + +I+ + E+L+E ++++ L WL + IL+ + N S Sbjct: 658 DFCFQKKNIKLKINNINIYNIIQLCEILEEKNKSIKNKFLLTIWLRKKILKKNIEKNKSK 717 Query: 725 Q--QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA 782 Q + +DK ++I+TI+KSKGLEYP++W+PF ++F+ ++ + + + + +++L Sbjct: 718 NLIQNKNINDKKFIKIITIYKSKGLEYPIIWIPFFSSFQKKKNQIIYCKKTLKKIVNLKN 777 Query: 783 APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL 842 +++ E ERL+ED+RLLYVA+TRS+ HC +G+A + ++ +K T+ H++ LG L+ Sbjct: 778 EKKNIISLEKERLSEDIRLLYVAITRSIIHCCIGLAVIKNKKNEK--YTNFHKNCLGYLI 835 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWR 902 QKG+ + + + L + + + + +++ +W Sbjct: 836 QKGKKKKFKNFKKNLYDLQIPGLIEIKKSNKVKKKFFKKKKRKKKNIFFFNKKIKQYSWT 895 Query: 903 VTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL 962 TS+S + + + + + + + + H FP G G +LH +F+ + Sbjct: 896 NTSFSKIIKYNQLKKNIINIKKENFINKINYNKKTSQINLHSFPLGKEFGIYLHDVFKKI 955 Query: 963 DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEME 1022 F + + +K F + L WI L+ PLN +SL ++ + Q E + Sbjct: 956 KFFKTKKTKKILKKTNFLSFSNILIKKLYLWINIFLKFPLNNENLSLEKIRKKEHQKETK 1015 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 F +PI + + + + +I++FDP+S C + + G+L G IDL+F + +YY+++YK Sbjct: 1016 FIIPIKKKINIKKFNLIIKKFDPISKKCSNIFYKNFFGILNGSIDLIFLWKKKYYIIEYK 1075 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 SNWLG DSS Y + + + +RYD+QYQ+Y+L LH YL+ ++ +Y+Y HFGG+ YLF Sbjct: 1076 SNWLGPDSSYYNSKNIKKEIIKYRYDIQYQIYSLVLHCYLKKKLKNYNYNTHFGGIFYLF 1135 Query: 1143 LRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 LR D ++ G Y +P+ LI ++ + G Sbjct: 1136 LRAFDNKN-NTGTYFIKPSYLLIKNLENLIYG 1166 >UniRef50_Q1NY14 Exodeoxyribonuclease V, beta subunit n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NY14_9DELT Length = 1239 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 425/1261 (33%), Positives = 613/1261 (48%), Gaps = 139/1261 (11%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 DP LP +LIEASAGTGKT++I ALYLR +L R L VE++LV++FTEA Sbjct: 6 FDPATLPAAPVQLIEASAGTGKTWSITALYLRFIL--------ERQLPVEKILVLSFTEA 57 Query: 68 ATAELRGRIRSNIHELRIACLR-----ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 ATAEL R+R+ + A R + +P L + AQ L A +D Sbjct: 58 ATAELHERLRARLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASID 117 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY---PLPREI 179 +AAV TIHGFC RML AFESGM FE +L+ + Q D+ + P + Sbjct: 118 QAAVLTIHGFCHRMLQQGAFESGMPFELELLAELDHYFQQLIHDYLNTVFHRDDPRLLSL 177 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDE---TLASRHAQIVARIDTVKQQW 236 + A L +R+L PV+ DDE LA +A ++ W Sbjct: 178 LRQQGWQQWQQWARLAASHRHL----PVVD----DDEQGAVLAQLWEATLAAYGKARENW 229 Query: 237 R---DAVGELDALIESSGIDRRKFNRSNQAKWIDKIS----AWAEEETNSYQL-PESLEK 288 + +A+GEL E R++ + D ++ A T S L PE L Sbjct: 230 QQEWEAIGELLRQTEFQQKTRQQMAAGLLNRLADHLAGPEPASLVVPTGSEDLIPEKLAD 289 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRR-- 346 + + G PRHP FE L S+ + LA + TV RE +R Sbjct: 290 PKAKICMAKNIKAGNWPRHPFFEYWRDYLVALQSLTAHYRRQLLAGLGATVRRELPKRLY 349 Query: 347 --GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH- 403 G FDD+L RL AL + LA I R+PVA+IDEFQDTDP QY IF+ ++ Sbjct: 350 AAGRQSFDDLLHRLAEALGDPGRKALAGLIAARYPVALIDEFQDTDPIQYAIFQAVYQQA 409 Query: 404 ---QPETALLLIGDPKQAIYAFRGADIFTYM-KARSEVHAHYTLDTNWRSAPGMVNSVNK 459 + T L+LIGDPKQAIYAFRGADIF Y+ AR YT++TNWR+ +V +VN Sbjct: 410 SRAEAATRLILIGDPKQAIYAFRGADIFAYLGAARDAGEQCYTMNTNWRADRSLVAAVNA 469 Query: 460 LFSQTDDAFMFREIPFIPVK------------SAGKNQALRFVFKGETQPAMKMWLMEGE 507 +F+ + F+ EI F PVK G L+F+ PA L+ G Sbjct: 470 IFAAQPNPFVVPEIAFYPVKPQPEAGDGWHGGEVGGTAPLQFL---TLAPAKVEELLTGA 526 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD--DARPVRASDISVLVRSRQEAA 565 +ST+ A + L RG A L GD D RP++ +DI++LVR ++A Sbjct: 527 RSKKQLARSTLENQIPALVAADLVKLLRGGATLTTGDAADRRPLQPADIAILVRENRQAD 586 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 +++ AL L + SV + +R SV + +A+++ LL ++ E R+A+ + ++ Sbjct: 587 EIQAALRLKGVKSV-VHSRASVLNSRQAEQLAILLYGLLEQAGEGQRRAAMVSELLACTP 645 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 ++ TL DE W + +F +R+IWR+RG++ +R + + LL A GERRLT Sbjct: 646 AELVTLAEDEKRWQQWLNDFSRWREIWRERGLISTMRIIDQEKGFTRRLLPMADGERRLT 705 Query: 686 DILHISELL--QEAGTQLESEHALVRWLSQ-HILEPDSNASSQQMRLESDKHLVQIVTIH 742 + H+ ELL +E L++ AL++W + D+ A +Q++RLESD+ V+I+TIH Sbjct: 706 NYRHLFELLHHREKEEHLQAT-ALLKWFDEARAGRADATAEAQELRLESDQEAVRILTIH 764 Query: 743 KSKGLEYPLVWLPFITNF------RVQEQAFYHD-RHSFEAVLDLNAAPESVDLAEAERL 795 ++KGLE+P+V+ P++ + +E YHD + ++ + L E L E+ Sbjct: 765 RAKGLEFPVVYCPYLWKTWQKERRKPEEVLIYHDPKADYQGKIALLPTAEERRLRAQEQF 824 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE---PQDAAG 852 AE+LRLLYVALTR+ HC L V + + +AL LL G+ D A Sbjct: 825 AEELRLLYVALTRAK-HCCLVV---------WEAASGYQDTALAHLLHGGQQPITNDRAE 874 Query: 853 LRTCIEALCDDDIAWQ----TAQTGDNQPWQVNDVSTAELNA----KTLQRLPGDNWRVT 904 L + C WQ A PW+ D S E +A +TL+ WRV Sbjct: 875 LLADLTGACKRQPHWQWRPLPADPATVAPWR--DPSRPEGSAGGYCRTLRHGIAPAWRVG 932 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAG---VASVVEEPTLTPHQ----------------- 944 S+S L A D D DA G A + + P + Sbjct: 933 SFSQLIAARGEQAPDFSQSRDYDAPGQPASAPLADTPAAQGGEDHGEAVKQRLPARVPLA 992 Query: 945 -FPRGASPGTFLHSLFEDLDFTQPVDPN-WVREKLELGGFESQWEPV-----LTEWITAV 997 FP G + G LH +FE + F + + + E+ G EP L++ + AV Sbjct: 993 DFPAGLNAGNLLHRIFELISFHEASEHRRIIAEQAATFGLTGAMEPEKVVAELSQAVAAV 1052 Query: 998 LQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP---- 1052 LQ PL ++ SL+ + +++ EM F P+ + L F + G PP Sbjct: 1053 LQTPLLSDESFSLADIDDQHRLNEMSFTFPLCQRGSPLTAAALAAAFAEEAVGLPPAYPA 1112 Query: 1053 ----LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 L F ++G +KGFIDLVF+H G++Y++DYKSN LG+ + Y + M H Y Sbjct: 1113 HLAELPFTALQGFMKGFIDLVFQHRGKWYIVDYKSNLLGDSHADYQPGRLWPPMVEHHYI 1172 Query: 1109 LQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ----QGIYTTRPNAGL 1164 LQY LYT+ALHR+L R+ YDY HHFGGV+YLF+RG+ HP+ GI+ RP AGL Sbjct: 1173 LQYHLYTVALHRHLSARLPAYDYRHHFGGVLYLFIRGM---HPELGTAAGIFQQRPAAGL 1229 Query: 1165 I 1165 I Sbjct: 1230 I 1230 >UniRef50_B3ECZ4 Exodeoxyribonuclease V, beta subunit n=5 Tax=Chlorobiaceae RepID=B3ECZ4_CHLL2 Length = 1226 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 422/1252 (33%), Positives = 628/1252 (50%), Gaps = 130/1252 (10%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD +PL G LIEASAGTGKT+ I +LYL + L E++LVVT+TEA Sbjct: 6 LDHSTVPLSGMNLIEASAGTGKTWAITSLYL--------RLLLEKELRPEQILVVTYTEA 57 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ------M 121 AT EL RIR I + A + TD+P L++ D AQA + A Sbjct: 58 ATRELHARIRRRIRQALDAMRGDPTDDPF---LIDLCDRAAQAGEEERAALLLEAALAEF 114 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY-PLPREIA 180 D AA+FTIHGFC R L +AFESG L++ +++ D+S L + DFWR + R + Sbjct: 115 DTAAIFTIHGFCNRALQDHAFESGALYDTEIVTDQSALAREVIDDFWRERFFGSADRLLG 174 Query: 181 QVVFETWKGPQALLRDINRY-LQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 + + W P A + + L G VI P + +A + A D V++ W + Sbjct: 175 YALLKGWS-PDAFMAFLKSLQLSGRDEVI--PVYGEAEIARIGHEAEAAFDEVRRIWSEE 231 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEE------ETNSYQLPESLEKFSQRF 293 + AL+ + + +RS +A D++ + N + L + +K + Sbjct: 232 KEPVSALLRTG----KGLSRSEKAYRADRVEQLLSDMEVFVAAGNPFGLFDGFDKLTASG 287 Query: 294 LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDD 353 + TK+ G P HPLF+ ++L A + + +A R+ + K+ R FDD Sbjct: 288 IASGTKSSGTAPSHPLFDTCERLQAAADERLQALKSEVVAFYRKRLPERKKERNIRFFDD 347 Query: 354 MLSRLDSALR------SESGEVLAAAI--------------RTRFPVAMIDEFQDTDPQQ 393 +L+ L AL+ + G + A+AI R R+ A+IDEFQDTDP Q Sbjct: 348 LLADLYQALQGGCEIAATPGGLEASAIIEIGLEAAALAEALRNRYRAALIDEFQDTDPVQ 407 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAP 451 Y IFRRI+ E L LIGDPKQAIY+FRGADIF Y++A S+V +TL+TNWRS P Sbjct: 408 YDIFRRIYAGS-EAPLFLIGDPKQAIYSFRGADIFAYLQAASDVGRERSFTLNTNWRSVP 466 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 +++ N LF F+F IP P+ AGK L + P L G+ G Sbjct: 467 KLLDGFNLLFDSARHPFVFDNIPSPPL-VAGKE--LPRDAESPVPPLEICLLRSGDGDGS 523 Query: 512 ---GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 G+ + A CA+ + + + G A DI+V+VR+ ++A ++ Sbjct: 524 LKSGESERFAAGACASMVTETINGGSD---------------AGDIAVIVRTHRQARMMQ 568 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL I SV S+ +SVF ++EA+E+ L+ A+ P RE+ +R+AL T + GLN DI Sbjct: 569 TALRECGIVSVMRSD-ESVFASVEAEEVRILVTALAEPGRESLVRAALVTPLFGLNGSDI 627 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG--GERRLTD 686 LN+DE+AW +++F Y ++W++ G M M+R LM + E LLA +G GER LT+ Sbjct: 628 ARLNDDENAWVERLQQFREYHRLWQECGFMVMVRELMRREAVRERLLALSGSSGERALTN 687 Query: 687 ILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 +LH ELL +EA ++ LV W + + + Q+RLESD+ V+IVT H SK Sbjct: 688 VLHCFELLHREAHSRGLGMEGLVTWFGERVAAKEPG-EEYQIRLESDEPAVRIVTAHVSK 746 Query: 746 GLEYPLVWLPF---ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 GL+YP+V+ PF N F+ D + A LA E LAE+LRL Sbjct: 747 GLQYPIVFCPFQFGGGNGSGDVVLFHDDDGRMKRDFGSRAIERHRALASREFLAENLRLF 806 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDT--------------DVHQSA--LGRLLQKGE 846 YVALTR+ C A +V R + G T + QS +G Q+ Sbjct: 807 YVALTRAERRCIFFTARIVDAR--QSGRTPMLSPSSYLLYVSDEASQSPRLIGEAQQELA 864 Query: 847 PQDAAGLRTCIEALCDDD---IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD---N 900 DA + ++ + D+ I + D+ + + A+ + L+ + Sbjct: 865 ALDAGTMAERLQNISDESGGAIRLRRLSLDDDLTVPLIRTAAADSPSFALREFTASLETD 924 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDV----DAAGVASVVEEPTLTPHQFPRGASPGTFLH 956 WR+ S++ L R H +A +L R + AA +V+ + + FP+GA G +H Sbjct: 925 WRIASFTTL-SRHHHMAFELPDRDESTPEQQAAAAPAVLPDTDRSIFAFPKGAGAGILMH 983 Query: 957 SLFEDLDFTQPVD---PNWVRE----KLELGGFESQWEPVLTEWITAVLQAPLN--ETGV 1007 S+FE LDF +D + + E L+ G+E W+P LT + VL+ L+ E Sbjct: 984 SIFETLDFANAIDDTSESHIEEASIRALDRYGYERHWQPCLTGMVQQVLRTELSSQEGNF 1043 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP------LEFMQVRGM 1061 +L L + E+EF+ P+ + + +L L+ + + G P L+F V+GM Sbjct: 1044 TLGGLRQGSWSTELEFFFPLRH-VTSPRLSELLMRHGVIPNGADPAAALQALDFTPVKGM 1102 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 L GF+D+VF +GRYYLLD+KSN LG AY ++ + AMQ + Y LQY LYT+AL R+ Sbjct: 1103 LMGFMDMVFEAKGRYYLLDWKSNHLGNAVEAYHRERLGKAMQENLYRLQYLLYTVALDRF 1162 Query: 1122 LRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ-GIYTTRPNAGLIALMDEMF 1172 L R+ Y Y+ HFGG IY+FLRGV E ++ G Y P+ LI + E+ Sbjct: 1163 LSLRVPGYRYDTHFGGAIYVFLRGVSVERGEEYGFYRDLPSEALIRELQELL 1214 >UniRef50_Q15V10 DNA helicase/exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V10_PSEA6 Length = 1320 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 352/963 (36%), Positives = 510/963 (52%), Gaps = 78/963 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ PL G LIEASAGTGKT+TI LYLRLLLG + PL+V+++LVVTFT A Sbjct: 4 LNTKTFPLTGASLIEASAGTGKTYTIVNLYLRLLLGDECT-----PLSVDKILVVTFTNA 58 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 ATAEL+ RIR + + + + + L+E D+ LLLA +QMD+AAV+ Sbjct: 59 ATAELKQRIRQRLQRAYLDFYAGVSSDDFTQYLIERSDNIELDCHRLLLAIKQMDDAAVY 118 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQRML+L+AFESG ++EQ L+ DES A D+WR H LP ++ + + W Sbjct: 119 TIHGFCQRMLSLHAFESGAMYEQSLVLDESQWLKLAVEDYWRGHIVHLPSQVLNELLDIW 178 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD---AVGELD 244 PQAL + L ++ D +T + + + K+ WR+ A +D Sbjct: 179 HCPQALQSALRSLLYRHVTPLQT--VDVKTSHESVDKYIKALQDTKRWWRENEVAQQIID 236 Query: 245 ALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL-EKFSQRFLEDRTKAGGE 303 A D + + +A +I K+ A+ + + + L FS + K + Sbjct: 237 A-------DLKANTKLGKADFIAKMQAFCLSDDSRADFDKDLWTTFSPAKVLSAMKKTSK 289 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVITR----ALAEIRETVAREKRRRGELGFDDMLSRLD 359 + H F + L D ++ AL I +A K+R L DD+LS L Sbjct: 290 SLAHLDFSRFETLAHLQKQCHDQLLLAHSLDALKHISTNLASNKQRLQLLSPDDLLSSLH 349 Query: 360 SAL----RSESGEV-------------------LAAAIRTRFPVAMIDEFQDTDPQQYRI 396 AL S SG+V LA AI+ +P A+IDEFQDTDP Q+ I Sbjct: 350 RALLAQVESNSGQVIEPDSELSHRDKLDTAHQSLAQAIQLSYPAALIDEFQDTDPVQFDI 409 Query: 397 FRRIWHHQ---PETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAP 451 FR I+ Q + IGDPKQAIYAFRGADI TY+ A+ V A +TL TNWRS P Sbjct: 410 FRIIYTQQFGDVTPCWVAIGDPKQAIYAFRGADIHTYIAAKKLVDASRQFTLGTNWRSQP 469 Query: 452 GMVNSVNKLFSQTDDAFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAM-KMWLMEGESC 509 +V VN LF+Q++ F+F++ IPF V S + L+ V + A + +G Sbjct: 470 SLVEGVNTLFTQSEAGFLFKDSIPFQAVASVEQQSGLQVVGQAHNSLAFHHLTSNDGLPI 529 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 G G+ QS +AQ CA I ++ G GEA + RPVR D VLVR R EA ++ Sbjct: 530 GWGEAQSALAQQCALSIAQFIHQGASGEAQIKQ----RPVRPGDCCVLVRDRNEADTIKQ 585 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL L + S++L+ R SVF + A ++ ++QA+ P + LR A+A+ + +A ++ Sbjct: 586 ALAALGVDSMFLA-RKSVFASQTAVDLFAIIQALANPSNDRYLRGAIASELFCYDATTLD 644 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-AGGERRLTDIL 688 L +DE W +VE+F + Q+W+++G+M L LM IAE L+ G+RRLTD+ Sbjct: 645 ALFSDEWQWQKLVEQFAYWHQLWQRQGLMMALNILMRHFKIAERLVGQYHDGQRRLTDLR 704 Query: 689 HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 H+ ELLQ + E ++ W H+ EPD++ QQ+RLE++++LVQI+T H SKGLE Sbjct: 705 HLVELLQVQSQLMSGESQILHWFQAHLAEPDNDNEGQQIRLETEQNLVQIITQHTSKGLE 764 Query: 749 YPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTR 808 YPLV++PF + R ++A YH+ V+D A E++ LA+ ERLAED+RLLYVALTR Sbjct: 765 YPLVFIPFASRCREMKEAIYHNEKD-GLVIDFLGADENLALADHERLAEDIRLLYVALTR 823 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL--QKGEPQDAAGLRTC--IEALCDDD 864 +V +C +G+ +K ++ + Q+ALGR+L Q + DA + + D D Sbjct: 824 AVHYCFIGLWN--NSHPQRKKESQLMQTALGRVLFNQGTQVSDAVITQRLDDLSQTIDVD 881 Query: 865 IAWQTAQTGDNQPWQVNDV-------------STAELNAKTLQRLPGDNWRVTSYSGLQQ 911 TAQ + + + S A L A L + WR+TSYS + Sbjct: 882 YLGFTAQDAERKATEFKQFLLSQDSKESLQTNSNAMLRAAVLPKPVTRRWRLTSYSAISS 941 Query: 912 RGH 914 + H Sbjct: 942 QQH 944 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/271 (39%), Positives = 151/271 (55%), Gaps = 24/271 (8%) Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNW 972 HGI+ D+D G E+ L F +GA G+FLH + E +DFT P++ + Sbjct: 1028 HGIS-------DIDEVGA----EQEVLDQFTFVKGAQAGSFLHGVLESIDFTNPINLMDV 1076 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPL---------NETGVSLSQLSARNKQVEMEF 1023 + EK G E +W V+ +W+ VLQ+ L N +SLS L+ VEMEF Sbjct: 1077 IIEKGTWYGIEQKWFAVVDKWLRDVLQSKLTAESSNIQQNGEHLSLSALAKNQVLVEMEF 1136 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 YLP+ E + A + ++ Q P +F Q+ GMLKGFIDL +++G++Y+LDYKS Sbjct: 1137 YLPLLE-VKAQTFNHILNQHIPQRQ--HHYQFEQLNGMLKGFIDLTLQYQGKFYVLDYKS 1193 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 N+LG + + Y +AMA AM+ H Y LQ LYTLALHR+L+ + +DY Y GG Y FL Sbjct: 1194 NYLGAEFADYHGEAMANAMEEHDYYLQAILYTLALHRWLKSKKSDYAYADDIGGAYYTFL 1253 Query: 1144 RGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 RG+ E G++ P LI +D +F G Sbjct: 1254 RGMHSEKSGNGVFYLMPAQALIEDLDALFNG 1284 >UniRef50_Q6ANK1 Related to exodeoxyribonuclease V, beta chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK1_DESPS Length = 1191 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 402/1234 (32%), Positives = 619/1234 (50%), Gaps = 106/1234 (8%) Query: 1 MSDVAETLDPL-----RLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPL 54 MS A T DP+ + P++ G IEASAGTGKT+ I L LR A + + Sbjct: 1 MSYKAGTPDPIIFDVAKTPMERGVNFIEASAGTGKTYAIGMLVLR--------AICEQDI 52 Query: 55 TVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW- 113 ++ +L+VTFT AA ELR R+R+ + E R D L + D+ A ++ Sbjct: 53 GIDRILIVTFTRAAAEELRSRVRARLVEARDLLQGRHEDASLRAWQEHAVKDEGVARRFI 112 Query: 114 --LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 L LA +D A +FTIH FCQRML+ A ESG LF L+ LR +A DFWR H Sbjct: 113 SRLQLAIVNIDRAGIFTIHSFCQRMLSEQALESGQLFRMDLLTSLDDLRLRAAEDFWRIH 172 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 Y L +V W P LL + +L G+ + P+ E ++ + I Sbjct: 173 VYSLSPWSCSLVMGQWSSPADLLANAFVHLHGDTRI----EPEVEDISLLWQNLEGAIAR 228 Query: 232 VKQQWRDAVGEL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETN-SYQLPESLEKF 289 +K+ W + L +AL E+ G D KF ++ A + A + + + P +L Sbjct: 229 MKEWWLGSGTALQEALAEACGED--KFKKAFVADFAGSFRACEKFFLGQAEKFPANLSWL 286 Query: 290 SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL---------------AE 334 + L + + G R + ID L + + ++ T L E Sbjct: 287 TVAGL--KVEINGNKFRGKKKDEIDPFL-NSMGLPEMAATELLELKKQLFIGYRIFFAGE 343 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 + V R+ + G + FD ++SRL + L E L A++ R+ +A+IDEFQDTD +Q+ Sbjct: 344 LERGVGRQLQEHGSISFDQLISRLAAGLCGEETH-LQTALQARYDLALIDEFQDTDNEQW 402 Query: 395 RIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMV 454 IF +++ + + L LIGDPKQAIY FRGADI++Y AR++ Y+LDTN+RS +V Sbjct: 403 HIFSKLFASKKHS-LYLIGDPKQAIYKFRGADIYSYFTARTKTDYFYSLDTNYRSHRDLV 461 Query: 455 NSVNKLFSQTDDAFMFRE--IPFIPVKSAGKNQALRFV--FKGETQPAMKMWLMEGESCG 510 VN LF+ +DD F+F+E + + PVKS GK++ + V K P + + L E + Sbjct: 462 RGVNGLFAGSDDPFLFKEEGLLYYPVKS-GKSRDVYLVDAEKKPLVPFVYLQLEENDDDK 520 Query: 511 VGDYQSTMAQVC-----AAQIRDWLQAGQRGEALLMNGDDA---RPVRASDISVLVRSRQ 562 G + S +A+ A+ L + +N D +P+R DI+VLVRS Sbjct: 521 KGKWSSALARTAIRGDIVAETLHLLSISEPTSIHKLNRDGQSIYQPLRPQDIAVLVRSNS 580 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 +A + A + +P++ ++ R ++FET E+ E+L LLQA++ + L++A+ S+ Sbjct: 581 QAEAYQQAFLQVGVPAI-IAGRKTIFETDESHELLLLLQAIIDHDDLRLLKTAMTISLFA 639 Query: 623 LNALDIETLNNDEHAWDVVVEEFDGYRQ---IWRKRGVMPMLRALMSARNIAENLLATAG 679 DI + DE A V E ++ + Q +W +RGV+ ML L+ ++ + NL+ + Sbjct: 640 CTGDDIMAIWQDEQA---VAEWYNVFLQCYHLWSERGVLTMLYFLVDSKELFANLVQFSQ 696 Query: 680 GERRLTDILHISELLQEAGT--QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 ERR+ + H+ E+LQ+A T L +L+ WL + N + ++RLESD+ +Q Sbjct: 697 PERRIANFTHLFEVLQQAETAANLGPRQSLL-WLRSALTGKQKN-DAFELRLESDEEALQ 754 Query: 738 IVTIHKSKGLEYPLVWLP--FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAER- 794 IVT+H SKGL+YP+V+ P + + R++ + H AV+D + S A R Sbjct: 755 IVTMHSSKGLQYPVVFCPDLYGRSARIKNEKNVISCHDGGAVIDFGSEHFSERRERACRE 814 Query: 795 -LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 LAEDLRL YVALTR+ A + R + SALG LL G+ D Sbjct: 815 ELAEDLRLAYVALTRAELRSYTYWADISARGAGVDASLN---SALGHLLFAGDDIDYEEQ 871 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ------RLPGDNWRVTSYS 907 + ++ L + A Q +P + AE K+L RL +W++TSYS Sbjct: 872 QERLKVLARESGA--LFQHVSAEPATCSSYG-AERRVKSLATRPHRPRLLATDWQMTSYS 928 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP 967 L G D P + D +A + P + + P+GA G +H L E F Sbjct: 929 ALASLG-----DHAPVVQFDRDALA---DAPRIAFAELPKGARFGNAVHDLLEKCAFADL 980 Query: 968 V-------DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 V + +K E G + E + T+ PL G SL+ LS E Sbjct: 981 VLHADDLHVQGMMEQKCEEYGLQLDQE-LFTQLFVQACSTPLFAGGFSLADLSRSRCLKE 1039 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 MEFYL ++ +A +++T++ + A + ++RG + GFIDLV +HEG+YY++D Sbjct: 1040 MEFYLRLAHINLA-EINTILADEPTVQA----ISAKKMRGYMTGFIDLVCQHEGKYYVVD 1094 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKSN+LGE S Y+ ++ M AH Y LQY +Y+L LH++L+ + Y YE HFGGV+Y Sbjct: 1095 YKSNYLGELQSDYSGDSLVQVMAAHNYGLQYYIYSLVLHQHLQTFVEGYSYEEHFGGVMY 1154 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 LF+RG+D + G++ TRP GLI +D + G Sbjct: 1155 LFVRGMDPDIAGSGVFATRPARGLIEALDRLIGG 1188 >UniRef50_B4RTM1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Bacteria RepID=B4RTM1_ALTMD Length = 1336 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 396/1300 (30%), Positives = 631/1300 (48%), Gaps = 173/1300 (13%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 A+ LD + +PL+G LIEASAGTGKTF I LYLRLLL + LTV+E+LV+TF Sbjct: 28 AQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLL--------EKKLTVKEILVMTF 79 Query: 65 TEAATAELRGRIRSNIHE-LRIACLRETTDN-------PLYERLLEEIDDKAQAAQWLLL 116 T+AAT E++GRI + E I + DN P+Y+ L + A L Sbjct: 80 TKAATEEIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVYQHLFTRCNTDESMA-LLKA 138 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A+ ++DEA+VFTIH FCQ ++ AF SG L D S L QA D+ R+ Sbjct: 139 AQLELDEASVFTIHAFCQHVITQLAFNSGFAMSLNLGNDTSDLYLQAAEDYIRK-VSKNE 197 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ-----IVARIDT 231 + + W P+ LL + N ++ + D E R VA + T Sbjct: 198 DDFRLLAESGWHTPERLLLEFNASIKSTLTPLMLSEQDIELAYQRQLDESPHTSVAYVKT 257 Query: 232 VKQQWRDAVGEL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNS---YQLPESLE 287 + Q D G L + LI++ ++ + + + + +W +S Y P E Sbjct: 258 LSQSVEDNEGLLVEQLIKTPA------HKKERPQELAALKSWLRSCADSGQYYLPPPEAE 311 Query: 288 KFSQRFLEDRTKAGGE---TPRHPLFEAIDQLLAEP------LSIRDLVITRALAEIRET 338 F + R +G + TP A+ ++ E + + LVI A+A I+ Sbjct: 312 AFVKGTRYARNSSGVKEILTPIKEFATALKKVFGEKDKALAKVPVFKLVI-EAIAFIKGR 370 Query: 339 VAREKRRRGELGFDDMLSRL-DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 V ++K++ G + FDD++ L D ++ + L +R +FPVA+IDEFQDTD +QY I Sbjct: 371 VDKQKKQLGVIDFDDLIRMLADEVVKPNN--TLVPELRKKFPVALIDEFQDTDAKQYAIL 428 Query: 398 RRIWHH-------QPET---------------ALLLIGDPKQAIYAFRGADIFTYMKARS 435 ++ + Q ET ALL+IGDPKQAIY FRG DIFTY+KA Sbjct: 429 DAVYPNASSNSASQTETDLSNDNEESASARVSALLMIGDPKQAIYRFRGGDIFTYLKAGR 488 Query: 436 EVHAHYTLDTNWRSAPGMVNSVNKLF-------SQTDDAFMFREIPFIPVKSAGKNQALR 488 + + ++TNWRS GMV + N+LF + D F F +I + PV+ K A + Sbjct: 489 QADYRWVMNTNWRSVEGMVKAYNRLFYGAPVASNTPTDVFGF-DIKYNPVEFTPKAAAAK 547 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQST------MAQVCAAQIRDWLQAGQRGEALLMN 542 + PA + M S + + ++T MAQ A +I L Q ++ Sbjct: 548 TPLR---DPAAQRSAMNYVSLCLEEKENTNIMRRKMAQWIAQEIYRLLNEAQ----FQLD 600 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 + +PV+ DI++LV+ R EA +++ L + VYLS+R ++F + EA+++L LL Sbjct: 601 NGETKPVKPQDIAILVKDRTEAGAIKNVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNG 660 Query: 603 VMTPERENTLRSALATSMMGLNALD-IETL-NNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 + + + S+LA+ + G + IE L + D+ WD +++ R +W ++G M + Sbjct: 661 IWHANDTSNVSSSLASPLWGYSPQTLIELLYHEDDAMWDKAMDKVLSLRDMWLQKGCMSV 720 Query: 661 LRALMSARNI--AENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP 718 L LM + A+N+ ER LT+ H++E+L++A T + L+ WL++ I +P Sbjct: 721 LLHLMQDSYVPHADNV------ERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKP 774 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT-------NFRVQEQAF-YHD 770 +S+ +RLESD L++++T H SKGLEYP+V++P+ T N + Q F ++D Sbjct: 775 ESD-EELTLRLESDSQLIRLITQHGSKGLEYPIVFVPYATGYKDASKNGKSTSQIFTFYD 833 Query: 771 RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 + + L +++ + E AED+RL YVA+TR+ C +GV PL Sbjct: 834 EDKQDLQMQLGQTAQAIARVQRESEAEDMRLAYVAVTRAAHRCYMGVIPLANNE------ 887 Query: 831 TDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN-----QPWQVNDVS 884 +SAL R L G+ + + + ++D + + GD ++ D + Sbjct: 888 ----KSALARALGLSGDESTNRDWPSVLRRVAEEDESHASYIDGDEFEEIYSGFEQGD-A 942 Query: 885 TAELNAKTLQRLPGDNWRVTSYSGLQQ-------------RGHGIAQDLMPRL------- 924 +L A + WR+ S+S + + G G + +P L Sbjct: 943 IPQLTALQFTGTASEEWRLYSFSAMSRLTTVGSVKSTDTVEGAGQSLPSVPVLRTVRDEE 1002 Query: 925 -----------------DVDAAGVASVVEEPTLTPHQFP--RGASPGTFLHSLFEDLDFT 965 DVD+ + T +F +GAS G LH + E DF+ Sbjct: 1003 VYALDTLSTDGEILGAIDVDSHTPLTQTSAVTKNDLRFTLEKGASAGNLLHDILEHSDFS 1062 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN-ETGVSLSQLSARNKQVEMEFY 1024 PV +E + G E + P L EW+ VLQ PL + +S L+ E EFY Sbjct: 1063 APVWEETGKELVNRFGLEEKRTPFLYEWLEEVLQTPLYPNVQLCMSDLTLEQTLREAEFY 1122 Query: 1025 LPISEP-------LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 P+++ ++ + ++ + P L +++GM+ GFIDL+F H+G+++ Sbjct: 1123 FPMNDTQWKQLREVLNTHRQSVAETLGGEAEPAPQLITAKLKGMMHGFIDLIFEHDGQFF 1182 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 + DYKS WLG+ +Y A+ Q H YDLQY +Y LALHRYL + + DY+ + HFGG Sbjct: 1183 VADYKSTWLGDTLESYMPSALFHNNQHHLYDLQYLIYCLALHRYLSNTLPDYEPDIHFGG 1242 Query: 1138 VIYLFLRGVDKEHPQ-QGIYTTRPNAGLIALMDEMFAGMT 1176 V YL+LRG+ E+ Q +G++ T + L+ +D +FA + Sbjct: 1243 VYYLYLRGMHPENEQGEGVFYTHIPSSLLHQLDAIFASKS 1282 >UniRef50_C6NU55 Exodeoxyribonuclease V beta chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU55_9GAMM Length = 1185 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 430/1213 (35%), Positives = 613/1213 (50%), Gaps = 125/1213 (10%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 ++ LDPL LPLQG LIEASAGTGKT+TIA LYLRLLLG G A PR E+LV+T Sbjct: 1 MSRVLDPLSLPLQGSALIEASAGTGKTYTIATLYLRLLLGHGEPATPPR--QPREILVMT 58 Query: 64 FTEAATAELRGRIRSNIHELRIACLRE----TTDNPLYERLLEEIDDKAQAAQWLLLAER 119 FT AAT ELR RI ++E I LRE + + L +RLL + D A A ++ E Sbjct: 59 FTRAATEELRERIALRLYET-ITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLEN 117 Query: 120 ---QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 +DEA++ TI +C R+L +A +G E +++ D + LR +A DFWRR YPL Sbjct: 118 AFNSVDEASIHTIDAWCHRVLREHALATGHDPEAEILTDSAPLRIRAVQDFWRREIYPLQ 177 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 R + T P+ LL + + P+ + L + A ++ +K QW Sbjct: 178 RAAPWWLQRT-PDPETLLEQVAGLPWLDPPLPAPRAAFHDWLENAAAPLLKAGTELKAQW 236 Query: 237 ----RDAVGELDALIESSGIDRRKFNRSNQAK-----WIDKISAWAEEETNSYQLPESLE 287 RD G L E + D NR + + + W E+ S +P ++ Sbjct: 237 SSTLRDTYGRW--LRELADRDPYPLNRKSLPPEKLQGALQSLDQWCVEKDAS--IPTAMA 292 Query: 288 KFSQ--RFLEDRTKAGGETPRHPLFEAIDQLLA--EPLSIRDLVI-----TRALAEIRET 338 ++ L + K G P P D LA + + D V+ +A A + Sbjct: 293 TVAKLGSALAECVKKGMHCPAPPSQAQFDTFLAALQQWQVDDEVLHGQALAQAAASMAAL 352 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 EK+R +L F+D+ L + LR GE LA A+R RFPV +IDEFQD+ +QY IF Sbjct: 353 YGEEKQRLRQLEFNDLSRALWNGLRGPGGEALAEALRQRFPVILIDEFQDSSARQYAIFE 412 Query: 399 RIWHHQ---PETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMV 454 RI+ P++ +LLIGDPKQ+IY FRGAD+ +Y++AR++ HY L TN+RSA +V Sbjct: 413 RIYRPSEPWPDSLMLLIGDPKQSIYRFRGADLDSYLRARADTAPRHYVLGTNYRSAEPLV 472 Query: 455 NSVNKLFSQTDD-----AFMFR-----EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 ++N L+++ D+ AF +R +P+ V +AG++Q R+ G+ PA+ Sbjct: 473 GALNALYARADERCPGGAFDYRGEGDDPLPYQAVAAAGRSQ--RWQLGGQEGPAITF-AQ 529 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + ++ + A+ AA I L G + R V A DI++L+R R+EA Sbjct: 530 HPLALTKEEFLTHFAEWTAATIAQLL--GDSTSGFVGADGKLRRVGAGDIAILLRDRKEA 587 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEM-LWLLQAVMTPERENTLRSALATSMMGL 623 A + AL +P+ +LS + SV+ + EA+E+ LWL A++ PE E LR ALA ++GL Sbjct: 588 AIMLSALHRRGLPAAFLSEKQSVYHSPEAEELRLWLF-ALLHPEDEAALRCALALPLLGL 646 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 D+ L+ DE W VE + +IW G++ L + + A +LA GERR Sbjct: 647 AQHDLWRLDTDEGLWAQEVERLREHARIWAHSGILTTLHRRLHQQATAARILARPDGERR 706 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 L+++LH+ ELLQ+A LE AL+ L + D+ A S +RLESD H ++I TIH Sbjct: 707 LSNLLHLGELLQQASQHLEGREALLEHLQREQDSEDNPADSHVLRLESDAHCIRIRTIHS 766 Query: 744 SKGLEYPLVWLPFITNFRVQE-----QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED 798 +KGL+YPLV+LPFI R Q D HS L+ S +L + ERL ED Sbjct: 767 AKGLQYPLVFLPFIAATRKDGNVPPWQVVTDDDHS-----TLSWQSPSAELMDRERLRED 821 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV-HQSALGRLLQKGEPQDAAGLRTCI 857 LRLLYVALTR+ + LG+A K T + +SA+GRLL E + C+ Sbjct: 822 LRLLYVALTRAEYALWLGLA------AGKTASTPLWWRSAVGRLLGADEGKTP---DQCL 872 Query: 858 EA---------LCDDDIAWQTAQ--TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 E L D I A +P + V TA +W + S+ Sbjct: 873 ETWKRYPACRVLAADTIPSAPAPRFAEPPEPRRTPPVYTARFE---------RDWSIHSF 923 Query: 907 SGLQQRGHGIAQDLMP-----RLD--VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLF 959 S L Q + + P RLD +AAG H FP+G G FLH L Sbjct: 924 SRLSQ---SLQTSVGPYPSPDRLDPGAEAAGQGW---------HTFPQGPGAGRFLHELL 971 Query: 960 EDL--DFTQPVDPNWVRE---KLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSA 1014 + L D P D W + + + G+ + W VL W + +PL G + ++L Sbjct: 972 QWLWRDGRWPED--WREDFLHRCDERGY-APWGSVLVHWFAVLRASPLGSLGTTFAEL-- 1026 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 R + EM F+ P S+ L +QLDTL RQ+ P L + G+ GF+DLVF +G Sbjct: 1027 RGARTEMPFWFP-SQHLPTNQLDTLCRQYLLPGRERPILGKQNLHGLFHGFMDLVFAVDG 1085 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEH 1133 RYY+LDYKS LGE+ +AY A+ + HRY+LQ LY LALHR+LR R+ Y E Sbjct: 1086 RYYVLDYKSTRLGENDAAYGDTAIREDVLEHRYELQAALYLLALHRHLRQRLGRQYRTEQ 1145 Query: 1134 HFGGVIYLFLRGV 1146 H GG +LR Sbjct: 1146 HLGGAWLWYLRAC 1158 >UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=Proteobacteria RepID=Q1BXL0_BURCA Length = 2007 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 421/1261 (33%), Positives = 603/1261 (47%), Gaps = 134/1261 (10%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD PL G IEASAGTGKT+ I ALY+RLLL + L +E+LVVTFT+A Sbjct: 12 LDVFACPLDGVNQIEASAGTGKTWNICALYVRLLL--------EKDLGADEILVVTFTKA 63 Query: 68 ATAELRGRIRSNIHELRIACLRETTDN---PLYERLLEEI--DDKA----QAAQWLLLAE 118 ATAEL RIRS + +L A +T D+ P RLLE DD A AA+ + A Sbjct: 64 ATAELHERIRSRLAQLAHAL--DTGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRAL 121 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 R D+AA+ TIH FCQR L F + M F + D++ LR++ ADFWR P Sbjct: 122 RAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDASLRFELAADFWRTRVEPAAAR 181 Query: 179 ---IAQVVFETWKGPQALLRDINRYLQGEAPVIK---APPPDDETLASRHAQIVARIDTV 232 A + E+ GP AL + R L+ ++ PD+ A+ Sbjct: 182 WPGFATWLVESGAGPAALDAQLARRLKKPLAALRWDGVTEPDESAEAAAAECFA----EA 237 Query: 233 KQQWRDAVGELDALIESSG--IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 + W +DAL+ ++ +++R A + + E+ + LP++ K + Sbjct: 238 ARMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPKAALKLT 297 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE-------TVAREK 343 Q L TK GG TP H F+ D L A + R LA I E +A K Sbjct: 298 QTALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPGELAERK 357 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 R R + FDD+L+ L AL + LA +R R+P A+IDEFQDTDP Q+ IF RI+ Sbjct: 358 RTRRVVSFDDLLANLYHALHAHP--WLAETLRARYPAALIDEFQDTDPLQFAIFDRIF-- 413 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 P L L+GDPKQAIY+FR AD+ TY+ AR+ A YTL N RS P +V++ N+ F Sbjct: 414 APRGPLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAVNQRSTPAIVDACNRFFLS 473 Query: 464 TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA----MKMWLMEGESCGV--GDYQST 517 AF+ + + V++ + +R F ET P ++W + G + D Q+ Sbjct: 474 NPRAFVLDGLDYYAVRAGTR---VRAPFVDETDPGPAGDFRVWALPGGEGTLLKRDAQAQ 530 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 AQ CAA+I ++ + G L P+ DI+VLV++ ++ + V+ L I Sbjct: 531 AAQACAAEIARLMRGAREGRVRLGES----PLSPGDIAVLVQTHRQGSLVKRVLATWGIG 586 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH- 636 SV L+ SVF T +A+++ +L A+ P LR+ALA+ GL+A + + + Sbjct: 587 SVELAQA-SVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGALWRMEQGDGD 645 Query: 637 --------------AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 +W VE F YR +WR+RG M R IAE L+A A GER Sbjct: 646 APPGASAADSADAMSW---VERFSRYRLLWRERGFAVMWRTFTRELRIAERLMAGADGER 702 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 R+TDI H++EL Q + +RWL+ L D Q+RLESD++LVQIVT+H Sbjct: 703 RVTDINHLAELTQARASAQPGIAPTLRWLAAQRL--DGGGEEAQLRLESDRNLVQIVTVH 760 Query: 743 KSKGLEYPLVWLPFITNFRVQEQAF--------YHDRHSFEAVLDLNAAPESVDLAEA-- 792 KSKGLEY +V+ PF+ + ++E YHD + +AVL E+ A Sbjct: 761 KSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHD-DAGDAVLHYGCDDEAAAHAARQA 819 Query: 793 --ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ---SALGRLLQK--G 845 E+ AE RL+YVALTR+V+ C + P + R ++ V + G Sbjct: 820 LREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFDAWLD 879 Query: 846 EPQDAAGLRTCIEALCDDDIAWQTAQT-GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT 904 EP D A L AL ++ + ++ L A+ R+ D WR+ Sbjct: 880 EPPDEAALEAAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDAWRLA 939 Query: 905 SYSGL------QQRGHGIAQDLMPRLDVDAAGVAS-----------VVEEPTLTPHQFPR 947 S+S L ++ G D R D DA + + P FPR Sbjct: 940 SFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDILVFPR 999 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFES---QWEPVLTEWITAVLQAPLNE 1004 GA+ G LH LFE FT+P +W LG + EP L + A++ +++ Sbjct: 1000 GAAAGECLHRLFELSRFTEP--ESW--HAAALGALHDRPVEAEPALAARLPAMMVRLVDD 1055 Query: 1005 T-------GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 G+ L L + EM F P + + L+ P A LE Sbjct: 1056 VVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVA----LEAGT 1111 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 + G +KGFID++ H+GR++++D+KSN LG AY +A+ AM H Y LQ LYT+A Sbjct: 1112 LAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLYTVA 1171 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGV----DKEHPQQGIYTTRPNAGLIALMDEMFA 1173 LHRYLR R+ DYDY+ H G +YLF+RGV G++ RP L+ +D M Sbjct: 1172 LHRYLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDRMME 1231 Query: 1174 G 1174 G Sbjct: 1232 G 1232 >UniRef50_Q7NQR1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Chromobacterium group RepID=Q7NQR1_CHRVO Length = 1196 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 422/1215 (34%), Positives = 586/1215 (48%), Gaps = 101/1215 (8%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + + LD L PLQG LIEASAGTGKT+TIAAL+ RLLL A P +E +LVV Sbjct: 2 NAPQALDALNCPLQGVNLIEASAGTGKTWTIAALFARLLLEERDGAP---PPAIERILVV 58 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE----EIDDKAQAAQWLLLAE 118 T+T+AATAELR R+R + E+ +A L D + R L E + A Q L A Sbjct: 59 TYTKAATAELRERLRRRLAEM-LALLDGKADGDDFLRALAARFPEGPARDVARQRLTAAV 117 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 D AA++TIHGFCQR+L AFESG F+ +L+ED++ + DFWRR P Sbjct: 118 NGFDAAAIYTIHGFCQRVLTDAAFESGQTFQAELVEDDAARLAEIVDDFWRRRIVAAPL- 176 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR- 237 +AQV+ E + P A L +I YL P +K PD L +A+ VA ++WR Sbjct: 177 LAQVLVERGETPDAWLAEIRPYLS--KPYLKLRAPDAVRL--ENARWVA-----SERWRL 227 Query: 238 -----DAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISAW-------AEEETNSYQLPE 284 + V E L + G + A+ D + W E +++S +L Sbjct: 228 LASAPEQVEEGLALFLAHPGFKANIYRPDTMARAADNLRGWLAQPDALPELDSDSRKL-- 285 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREK- 343 L+K L K G + P HPLFE ++ LA D V E +A Sbjct: 286 -LDKLRPEALAKGMKKGCDAPAHPLFERMEAWLAAWDVYMDQVANSLAGLKLELIAWANE 344 Query: 344 ---RRRG---ELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 RRRG FDD+L+ L +AL +G +LAA + F VA+IDEFQDTDP QYRI Sbjct: 345 ELARRRGVERSRSFDDLLTDLGAALDHPATGPLLAAQVADSFSVALIDEFQDTDPTQYRI 404 Query: 397 FRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNS 456 FRR + + + L+GDPKQAIY+FRGADIF Y+ AR + YTLDTN RS +V + Sbjct: 405 FRRCFVEEARP-VFLVGDPKQAIYSFRGADIFAYLAARHDAERQYTLDTNRRSDEPLVAT 463 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES--CGVGDY 514 VN LF + + F+ I + PV +A + R + P WL GE Sbjct: 464 VNALFGR-ELPFLLDGIAYQPV-AASPSSGGRLEVDDDRAPFNAQWLPAGEKELSKEAAE 521 Query: 515 QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 + R AG+ A ++ G R + DI+VLV + + +VR L Sbjct: 522 LAAAEACADEIARLLTLAGE-DRAAIVKGASRRRLAGGDIAVLVATHSQGDRVRSELRAR 580 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 + SV L+ +SVF + EA EML LL A P E LR ALAT + GL+A I+ D Sbjct: 581 GVASVALTQ-ESVFASREAGEMLALLHAWAEPANEGRLRRALATELAGLDAARIQAELED 639 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 E W+ + + Q WR+ G M R + AE LL GERRLT++ H++EL+ Sbjct: 640 ETRWERQLLKNADDHQRWREHGFMAAWRHYFARERAAERLLPLPDGERRLTNLGHLAELI 699 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 Q+ + L+ W + + +P +RLESD LV+IVT+H SKGL+YP+V+ Sbjct: 700 QQESEGRQGMAPLLAWFAARVADP-PRGEDAVLRLESDAALVKIVTVHTSKGLQYPVVFC 758 Query: 755 PFITNFRVQEQAF----YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 PF+ N ++ + YHD + A A +E LAE LRLLYVALTR+ Sbjct: 759 PFLWNGALERRGAGFWSYHDGDEPWLAPEAAADDGIRQAARSEMLAEKLRLLYVALTRAQ 818 Query: 811 W--HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQ 868 + + S G VR ++ +AL LL +D A L L +A Q Sbjct: 819 YRQYISWG---WVR---------ELKTAALSWLLHAPGARDLAALEAL--ELDGGTVAAQ 864 Query: 869 TA----QTGDNQPWQVNDVSTAELNAKTLQR----LPGDN-----WRVTSYSGLQQRGHG 915 Q G W + A + R LP + W++ S++ L H Sbjct: 865 LRAFLDQRGGAARWLEAEGRQALAGGRDPGRAYAALPFERRLYAPWKIASFTSLT---HD 921 Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLTPH---QFPRGASPGTFLHSLFEDLDFTQPVDP-- 970 L D D A + E FPRGA G LH +FE++ F D Sbjct: 922 AGSHLAEAPDYDRAAAPAPAEPAADPVRDRFSFPRGAKAGVCLHEIFENIGFGDAEDDIR 981 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEP 1030 V+ L GF +W + I L A + G L ++ + +E+EF LP+ + Sbjct: 982 AAVQRALARHGFGEEWLDAGCDLILGALNAEI-APGARLRDVADHKRLIELEFTLPVKKL 1040 Query: 1031 LIASQLDTLIRQ----FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 +A+ + L + +P L+F V+G LKGF+DLV GR YL+DYKSN L Sbjct: 1041 DVAALIAALQKPAHGLAEPFRRAAAGLDFASVQGFLKGFVDLVCEAGGRVYLIDYKSNHL 1100 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 G+ Y ++ A+ Y LQY +Y +AL RY R AD+D FGGV YLFLRG+ Sbjct: 1101 GDACDDYRDDSLVHAVAREHYYLQYLIYLVALRRYFAARGADWD--GRFGGVRYLFLRGM 1158 Query: 1147 DKEHPQQGIYTTRPN 1161 + P G++ P+ Sbjct: 1159 GE--PGCGVWADMPS 1171 >UniRef50_A4B915 Exodeoxyribonuclease V, beta subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B915_9GAMM Length = 1130 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 388/1202 (32%), Positives = 602/1202 (50%), Gaps = 145/1202 (12%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MSD+ L+ LPL LIEASAGTGKT+ I +YLRLLL + LTV+++L Sbjct: 4 MSDMP-ILNAGELPLADTHLIEASAGTGKTYNIVRIYLRLLL--------EKELTVDQIL 54 Query: 61 VVTFTEAATAELRGRIRSNIHE-LRI---ACLRETTDNPLYERLLEEID-DKA--QAAQW 113 V+TFT+AATAE+R R+ + + E L+I R+ + YE + +D +KA Q Q Sbjct: 55 VMTFTKAATAEIRNRLSAFLREALQIWETQNYRDDKERAFYETIRRRVDPEKARLQMRQA 114 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 LL Q+DEAA++TIHGFC+R L+ AF SG+ F + D L QA D++RR Sbjct: 115 LL----QLDEAAIYTIHGFCKRALSQQAFFSGLSFHANMEADSQELMLQATQDWYRR--- 167 Query: 174 PLPREIAQV-----VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR 228 I Q + E W P+A + +R + + P + AP T+ + + + Sbjct: 168 -----IQQADWYADIDERWPTPEAFMAHWSRVIGSDIP-LNAP-----TVENLDSLLAEH 216 Query: 229 IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAK-------WIDKISAWAEEETNSYQ 281 ID+ W D E + + K N+ +A+ I+ + AE + Sbjct: 217 IDS----WSD---ERETFL--------KLNKPRKAEVIALRDSLIEALDRAAEGQPLQAL 261 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR 341 P+ KF F +AG R + + A L++ + IRE + Sbjct: 262 DPDVESKF---FNTKAKQAGLSVCRRLVHLTLTNEKARKLNL----ALDGVRFIREQLNA 314 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 K R+ +L F+D++ +L AL L A+ +FP A++DEFQDTDP QY+I RI+ Sbjct: 315 SKARQDQLDFNDLIIQLRRALDGPHAVELQKALLDQFPAALVDEFQDTDPDQYQILNRIY 374 Query: 402 H--HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 H H P L +IGDPKQAIYAFRG D+F Y+ AR + +T+DTN+RS+P +++ N+ Sbjct: 375 HRQHGPHF-LCMIGDPKQAIYAFRGGDVFAYLSAREQATQQWTMDTNYRSSPSVIDGYNR 433 Query: 460 LFSQTD-----DAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM---EGESCGV 511 F Q+D +AF F I + + +A + +F + + L E + Sbjct: 434 TFLQSDAPVNPEAFGF-GIEYHRILAADDRKDP--IFSDDRSGVQWVHLSPADESVNTVK 490 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG--DDARPVRASDISVLVRSRQEAAQVRD 569 ++Q ++A C +I A L+N D R + A DI++LVRS EA ++D Sbjct: 491 KEFQQSIADWCVQEI-----------AHLLNDVTKDERSITAGDIALLVRSYGEAQLLQD 539 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 L +PSVYLS R +VF+T EA+++ LL + + + +ALA S +GLN ++++ Sbjct: 540 TLRRANLPSVYLSARQNVFQTSEARDLYQLLNGIWQADNDRLFLAALAGSWIGLNLIELD 599 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 L +DE W F +R+ W +RG+M +L ++ + + + ER LT+ LH Sbjct: 600 QLQHDERLWAQWQTRFVQWREDWTQRGLMSVLLEILQSHHRPQR----DATERSLTNRLH 655 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 ++E LQ Q AL+ W ++ L+ D+ Q+RLESD L++I+T+H +KGLEY Sbjct: 656 LAERLQLESNQHRLPDALLHWFAR-ALDEDTGEEDNQLRLESDDALIKIITMHGAKGLEY 714 Query: 750 PLVWLPFITNFRVQEQ--AFY--HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 805 P+V++PF + + Q AFY HDR +F + + E L + E AE +RLLYVA Sbjct: 715 PIVFIPFASYYSASRQSPAFYHFHDRETFASQWVYLSNDEQKQLTQEEDEAERIRLLYVA 774 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG-------EPQDAAGLRTCIE 858 +TR + +AP T QS LG L++ + +G + Sbjct: 775 MTRPIDRLYCCLAPF----------TGFAQSPLGLTLKQASFELSDISAKVCSGQAATLM 824 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ 918 ++ + DI T T ++ D S A ++R +W ++S+S L + + Sbjct: 825 SVNERDIQTVTMTTPESP-----DTSIAAEFHGHIER----DWWLSSFSALTRHVGHSSH 875 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE 978 R ++D G E T + +GA G LH E DFT P P + + + Sbjct: 876 STPDRDELDGLG---STETSTELRFRLAKGAEAGNLLHDTLEHCDFTNPDYPTLLEQARK 932 Query: 979 LGGF--ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 +S + +WI +L AP++ G L L + E EFY P+ + I +L Sbjct: 933 RYSILAKSFTDDEFRQWIDELLHAPID--GFRLCDLPKQKTLREAEFYFPMEDTPI-DKL 989 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 +I Q + P + +++GM+ GFIDL+F +GRYY+ DYKS LG + Y Sbjct: 990 SAIIAQRRGETFQLP--DRHRLKGMMHGFIDLIFEWQGRYYVADYKSTHLGHQLTHYQPP 1047 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ--G 1154 ++ ++ + YD+QY +Y +ALHRYL R+ Y+ + HFGGV Y +LRG+ HP G Sbjct: 1048 SIRHSILSSHYDVQYAIYAVALHRYLAGRVPGYNPKQHFGGVYYFYLRGM---HPDSTTG 1104 Query: 1155 IY 1156 IY Sbjct: 1105 IY 1106 >UniRef50_Q3JU29 Exodeoxyribonuclease V, beta subunit n=25 Tax=pseudomallei group RepID=Q3JU29_BURP1 Length = 1934 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 416/1297 (32%), Positives = 597/1297 (46%), Gaps = 171/1297 (13%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 A LD PL G IEASAGTGKT+ I ALY+RLLL + L +E+LVVTF Sbjct: 675 ASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLL--------EKDLGADEILVVTF 726 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTD---NPLYERLLEEID------DKAQAAQWLL 115 T+AATAEL RIR+ + +L A +T D +P RL E D AA+ + Sbjct: 727 TKAATAELHERIRARLAQLAHAL--DTGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVR 784 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 A R D+AA+ TIH FCQR L F + M F ++ D+ LR++ ADFWR P+ Sbjct: 785 RALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGALRFELAADFWRTRVEPV 844 Query: 176 PRE---IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR--ID 230 A+ + E GP AL + R L+ ++ D A A+ AR D Sbjct: 845 AAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRW---DGLHAADDGAESAARAHFD 901 Query: 231 TVKQQWRDAVGELDALIESS--GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 T WRD G L L+ + +++R ++ +D + + E+ + LP + K Sbjct: 902 TAAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALK 961 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE-------TVAR 341 +Q LE TK GG TPRH F+ L A ++ R L+ + + +A+ Sbjct: 962 LTQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQ 1021 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 KR R + FDD+L+ L AL ++ L +R R+P A+IDEFQDTDP Q+ IF I+ Sbjct: 1022 RKRTRRVVSFDDLLANLYRAL--DAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIF 1079 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLF 461 P L L+GDPKQAIY+FR AD+ TY+ AR+ A YTL N RS P +V++ N++F Sbjct: 1080 --APAGPLFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVDACNRVF 1137 Query: 462 SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA-----MKMWLME-GESCGVGDYQ 515 AF+ + + PV++ + +R T P ++W + G+ Sbjct: 1138 GANPRAFVLDGLDYEPVRAGSR---VRAPLVDATDPLAGAGDFRIWTLPVGDDVLTKRDA 1194 Query: 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 A A L G R A+ + G+ P+ AS I+VLV++ ++ + V+ L Sbjct: 1195 QRHAAHACAAEIARLMRGAREHAVTLGGE---PLAASGIAVLVQTHRQGSLVKRVLAAWG 1251 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 I SV L+ SVF T++A+++ +L A+ P LRSALA+ GL+A + L + Sbjct: 1252 IGSVELAQ-ASVFATIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGD 1310 Query: 636 HAWDVV----------------------------------VEEFDGYRQIWRKRGVMPML 661 D + VE F YR +WR+RG M Sbjct: 1311 AEQDGIDAAAGGASGNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMW 1370 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 R L IAE L+A A GERR+TD+ H++EL Q + +RWL+ E Sbjct: 1371 RTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRRE--GG 1428 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF--------YHDRHS 773 Q+RLESD++LVQIVT+HKSKGLEY +V+ PF+ + ++E A YHD S Sbjct: 1429 GDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHD-ES 1487 Query: 774 FEAVLDLNAAPESVDLAEAERL----AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 AVL E+ + A E + AE RL+YVALTR+V+ C L R K+ Sbjct: 1488 GCAVLHYGCDDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEA 1547 Query: 830 DTDVHQ---SALGRLLQK--GEPQDAAGLRTCIEALCDDDIAWQTAQT-GDNQPWQVNDV 883 V + GR EP + A L +AL + +P Sbjct: 1548 RRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHD 1607 Query: 884 STAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPH 943 + A A+ R D WR+ S+S L IA+ D +G+A ++ H Sbjct: 1608 AQATRAARRATRGLRDAWRIASFSSLAS---AIAR--------DESGIARAADDEMRPDH 1656 Query: 944 Q--------------------------------------FPRGASPGTFLHSLFEDLDFT 965 FPRGA+ G LH L E +F Sbjct: 1657 DALAAALGADALEPPDAAAAIAPAPAAAPRELAGDDILAFPRGAAAGECLHRLLELSNFA 1716 Query: 966 QPVD-PNWVREKLELGGFESQWE-----PVLTEWITAVLQAPLNETGVSLSQLSARNKQV 1019 P L E++ P + + A L A G+ L+ L + Sbjct: 1717 DASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDPARRLT 1776 Query: 1020 EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLL 1079 EMEF P A + L R LE + G +KGFID++ H+GR++++ Sbjct: 1777 EMEFLFPAP----ALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIV 1832 Query: 1080 DYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 D+KSN LG AY ++A+ AAM H Y LQ LY +ALHRYLR R+ YDY+ H G + Sbjct: 1833 DWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHRYLRVRMHGYDYDAHIAGYL 1892 Query: 1140 YLFLRGVDKE----HPQQGIYTTRPNAGLIALMDEMF 1172 Y+F+RGV + G++ RP LI +D + Sbjct: 1893 YVFVRGVRPDWRNGGASAGVHARRPARALIEALDALM 1929 >UniRef50_C8R0F2 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0F2_9DELT Length = 1303 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 420/1322 (31%), Positives = 604/1322 (45%), Gaps = 215/1322 (16%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 LP +LIEASAGTGKT++I +LYLR +L + L VE++LV++FTEAATAEL Sbjct: 12 LPSAPLQLIEASAGTGKTYSITSLYLRFIL--------EQELPVEKILVLSFTEAATAEL 63 Query: 73 RGRIRSNIHELRIACLRET-TDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHG 131 GR+R+ + A + T++P + L+ + + L A +D+AAV TIH Sbjct: 64 HGRLRARLQAAATAFQQGGGTNDPFLQELVRNSRRPERDLRLLQRAVSDIDQAAVTTIHS 123 Query: 132 FCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF---------------WRR------ 170 FC R+L AFESGM FE +L+ + + + DF WRR Sbjct: 124 FCHRVLQQGAFESGMPFELELLGEVTPFIDELIYDFLATLHHRDDPRLLALWRRVYSLTE 183 Query: 171 -----------HCYPL-------PREI----AQVVFETWKGPQALLRDINRYL------- 201 +PL P I A++ + + P L R Sbjct: 184 LRALVREGLRHRHFPLLTGVSEQPHRIFGRSARLTYRGYAAPGCLPEPAARLFAYGPLDR 243 Query: 202 QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSN 261 Q APV P A + A I R +Q W+ E+ + + +K+ Sbjct: 244 QFSAPVGAETSP----WAGQMADIQRRYTRARQCWQQNREEIVKTLHDTDF-LKKYRDLL 298 Query: 262 QAKWIDKISA-WAEEETNSYQLPESLEKFSQRFLEDRTKA--------GGETPRHPLFEA 312 A +DK++ A E S LP EK + D G PRH F+ Sbjct: 299 AAGLVDKLAVHLAAPEPRSLVLPSGAEKMTPAVFNDPDGGVCKKINIKKGNIPRHRFFDL 358 Query: 313 IDQLLAEPLSIRDLVITRALAEIRETVAREKRR-------RGELGFDDMLSRLDSALRSE 365 + EP ++ L + A +E +A +R G FDD+L L+ ALR Sbjct: 359 WAHYM-EP--VQKLAFSYQTAIQQELLAFARRELPARLAAAGLQSFDDLLYGLERALRGP 415 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA------LLLIGDPKQAI 419 L I +R+PVA+IDEFQDTDP QY IF++++ L+LIGDPKQAI Sbjct: 416 GAAALRRFIGSRYPVALIDEFQDTDPVQYSIFQQVYGQHVAGGREEGRRLILIGDPKQAI 475 Query: 420 YAFRGADIFTYMKARSEV-HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV 478 YAFRGADIF Y++A + YT+ NWR+ +V +VN LF F+ I F V Sbjct: 476 YAFRGADIFAYLQAAQDAGEQRYTMTINWRADRRLVAAVNALFQPVAQPFVVPGIDFPAV 535 Query: 479 K-------------SAGKN--QALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCA 523 SAG+ Q L+F+ + A ++ G + + + A Sbjct: 536 TARPDAPDLWRETTSAGEEDEQPLQFLLP-PPKLAERLNSGPGRLPARSRVEKAVPNLVA 594 Query: 524 AQIRDWLQ-AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A I L+ AG GE R +R +DI+VLVRS Q+AA V+ AL + +V L Sbjct: 595 ADIVRLLEGAGSLGE---------RGLRPADIAVLVRSNQQAALVQHALQRRGVAAV-LH 644 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 +R+SVF++ EA+++ LL ++ E R+A+ + ++G ++E+L DE W + Sbjct: 645 SRESVFQSTEARQLSILLHGLLGQAGEPQRRAAMLSGLLGCTRAELESLEEDEQQWQSWL 704 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL--QEAGTQ 700 F + ++W +RG M ++RA+ + + LL G+RRLT+ H++ELL QE Sbjct: 705 LRFTRWSRLWSERGFMAVMRAIGEEQEMPARLLNHPNGQRRLTNFRHLAELLHNQEREAH 764 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--T 758 L+ AL++WL + I + ++RLESD+ VQ++TIH+SKGL+YP+V+ P++ T Sbjct: 765 LQPP-ALLKWLDEGIAGLRPGSEFDELRLESDEEAVQVLTIHRSKGLQYPVVYCPYLWKT 823 Query: 759 NFRVQEQ-----AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 R E+ F+ ++ + L E E AEDLRLLYVALTR+ HC Sbjct: 824 GKRKNEEKDKFFTFHDPDDHWQGKITLQPDDEQRQARRRELFAEDLRLLYVALTRAR-HC 882 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE----PQDAAGL-------RTCIEALCD 862 R G +SAL LL GE P D GL R + Sbjct: 883 C---------RAVWFGADGYQESALAYLLHGGEQGHPPADLTGLSFAELQQRLHRRVANE 933 Query: 863 DDIAWQTAQT----GDNQPWQVNDVSTAELNAKT----LQRLPGDNWRVTSYSGLQQRGH 914 D QTA Q QV S A T +Q WRV S+S L R Sbjct: 934 PDWGLQTASAETIPAPPQHGQVQKPSAAAAADPTRLRQMQTTIDTAWRVGSFSHLIARAS 993 Query: 915 GIAQDLMPRL---------------------------DVDAA---GVASVVEEPTLTP-- 942 + + R D DAA G A+ V P Sbjct: 994 ELNATVSERDYDAAADAAATVAGDSAGAAARTATGDSDGDAAGDRGGAAPVTAAGAPPVS 1053 Query: 943 ---------HQFPRGASPGTFLHSLFEDLDFTQP-VDPNWVREKLELGGFE-SQWEPVLT 991 P GA+ G H + E + F QP + E+L + G + QW+PVL Sbjct: 1054 LRLAARVPLADLPAGAAIGNLWHRILELISFQQPDQHQEIIAEQLRIFGVDRRQWQPVLE 1113 Query: 992 EWITAVLQAPLNET-GVSLSQLSARNKQVEMEFYLPI---SEPLIASQLDTLIRQFDPLS 1047 E + +L PL L+ + + EM F P+ +PL A+ L + +QF Sbjct: 1114 EALATILDTPLTAAEPFRLADIKDTERLNEMAFIGPVRQQDQPLEAADLARVFKQF---P 1170 Query: 1048 AGCPP--------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 PP L F ++G LKGF+DL+ R + ++Y++DYKSN LG + Y + Sbjct: 1171 ENLPPGYADRLAQLRFPALQGYLKGFVDLICRWQNKWYVIDYKSNLLGPTHADYQPANLL 1230 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTT 1158 AM H Y LQY LYTLALHR+L R+ DYDY+ HFGG +YLFLRG+ + P GI+ Sbjct: 1231 PAMSNHHYILQYHLYTLALHRHLAQRLPDYDYDQHFGGALYLFLRGLHPDLGPAAGIHHE 1290 Query: 1159 RP 1160 RP Sbjct: 1291 RP 1292 >UniRef50_C4ZM86 Exodeoxyribonuclease V, beta subunit n=2 Tax=Proteobacteria RepID=C4ZM86_THASP Length = 1321 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 352/913 (38%), Positives = 479/913 (52%), Gaps = 76/913 (8%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVV 62 ++ LDP PL+G RLIEASAGTGKT+TIAALYLRL+LG G AF RPL E+LV+ Sbjct: 1 MSHRLDPACFPLRGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVM 60 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTD---NPLYERLLEEIDDKAQAAQWLLLAER 119 TFT AAT EL RIR + E E +PL + L D A Sbjct: 61 TFTRAATRELSERIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAM 120 Query: 120 QMDEAA---VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 VFTI +CQRML +AF+SG F+++L DES+L +A D+WR+HCYPL Sbjct: 121 AAAAMDDAAVFTIDAWCQRMLREHAFDSGNPFDEELAADESVLLTEAAQDYWRQHCYPLA 180 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGE-----------APVIKAPPPD------DETLA 219 E ++V W AL+ D+ R L G+ A P D D Sbjct: 181 GEALELVLAQWADVHALVEDM-RALVGQPLQGADRDDGGDRDRSADPGDQDGVRRDSAGG 239 Query: 220 SRHAQIVARIDTVKQQWRDAVGE---------LDALIESSGIDRRKFNRSN-----QAKW 265 A ++ R+ ++ R A+ D L E + +NR+ W Sbjct: 240 ETLAALIGRVGGAHRRARVALSRGWAERARAMKDWLDEELATKAKLWNRTKLHERYYTPW 299 Query: 266 IDKISAWAEEETN-SYQLPESL-EKFSQRFLEDRTKAGGETPRHP-LFEAIDQLLAEPLS 322 ++ + WA + +LP+S + + L + KA P P F A L+ + + Sbjct: 300 LEALEQWARNPLDRRLELPDSARHRLTPDGLLEARKADAPAPVLPEHFAAFAGLIEDHDA 359 Query: 323 I---RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFP 379 + R + A + E +A KR+ GF D+L RLD AL G L I T++P Sbjct: 360 LPDPRTALRIHAATRVGERLAELKRQARSFGFADLLDRLDRALAGPHGARLRERILTQYP 419 Query: 380 VAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSE 436 VA+IDEFQDT P QYR+F ++ P +ALLLIGDPKQ+IY FRGADI++Y++AR Sbjct: 420 VALIDEFQDTSPLQYRLFDALYRAADDDPRSALLLIGDPKQSIYGFRGADIYSYLQARRA 479 Query: 437 VHA-HYTLDTNWRSAPGMVNSVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQ 485 HY L TN+RSA +V +VN F+Q +D AF FR+ +PF V + G+ + Sbjct: 480 TAGRHYMLGTNFRSAHALVGAVNAWFAQAEDRPGAGAFGFRDGADNALPFEAVAAQGREE 539 Query: 486 ALRFVFKGETQPAMKMWLMEGESC--GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 F G PA+ L+ + G+ + A CA +I WL G G Sbjct: 540 V--FHADGGVPPAL---LIHHDLTLRSAGEIRRLFAARCAERIVGWLNDEHAG--FQAPG 592 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 + +R +DI+VLVRS +EAA+VR AL + SVYLS++DSVF + EA ++L L+AV Sbjct: 593 KAFQRLRPADIAVLVRSGREAAEVRRALRRRGLASVYLSDKDSVFASAEAHDLLHWLRAV 652 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRA 663 +P +R+ALAT +GL+ ++ L + + A+D E+F WR+ GV+ MLR Sbjct: 653 ASPLDARLVRAALATRTVGLSIPELARLASSDAAFDARSEQFRALHVAWRELGVLTMLRR 712 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 + ++ LA GERRLT+ LH++ELLQ+AG LE E ALVRWL+ I S A Sbjct: 713 SLHLLDLPARWLAEPEGERRLTNFLHLAELLQQAGATLEGETALVRWLAMTIEAGGSRAG 772 Query: 724 SQQ-MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--AFYHDRHSFEAVLDL 780 +Q +RLESD LV++VT+HKSKGLEYP+V LPF T+FR E+ A Y L Sbjct: 773 EEQVVRLESDADLVKVVTVHKSKGLEYPVVCLPFATSFRAVERRTARYLKLADASGRRRL 832 Query: 781 NAAPESVDL--AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 + DL AEAERL EDLRL YVALTR+ +G A + R K H+SA Sbjct: 833 ALDYDDADLERAEAERLREDLRLFYVALTRARHALWMGFAAV---RIGKGKACQTHRSAP 889 Query: 839 GRLLQKGEPQDAA 851 G LL G D A Sbjct: 890 GHLLAGGAALDEA 902 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 132/236 (55%), Gaps = 13/236 (5%) Query: 943 HQFPRGASPGTFLHSLFEDL---DFTQPVDPNW---VREKLELGGFESQWEPVLTEWITA 996 H+FPRGA G FLH + E L F + +R + E G + + L +W+ A Sbjct: 1081 HRFPRGAFAGDFLHDVLEWLAAEGFALGANEGLEAALRRRCERAGHGERTDE-LVQWMRA 1139 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 +L A L +L L R EMEF+LP S L A+ +D L R+ + P L Sbjct: 1140 LLGARLPSLDAALQDL--RVLITEMEFWLP-SAHLQATAVDALCRRHLLHAQPRPALPQR 1196 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 ++ GML GF DLVF H+GRY++LDYKSN LGED SAY + A+ AAM HRYD+Q +Y L Sbjct: 1197 ELHGMLMGFADLVFEHDGRYWVLDYKSNSLGEDGSAYDRAALEAAMAHHRYDVQAAIYLL 1256 Query: 1117 ALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEM 1171 ALHR LR R+ Y+ GG +YLFLRG+D P +G Y LI L+D + Sbjct: 1257 ALHRLLRARLGGAYEPARQLGGALYLFLRGIDG--PARGEYAIPATPALIELLDTL 1310 >UniRef50_B5EAR6 Exodeoxyribonuclease V, beta subunit n=5 Tax=Geobacter RepID=B5EAR6_GEOBB Length = 1130 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 324/850 (38%), Positives = 446/850 (52%), Gaps = 76/850 (8%) Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKA 433 IR R+ A+IDEFQDTDP Q+ IF I+ E LIGDPKQAIY+FRGADIF YM A Sbjct: 260 IRERYQAALIDEFQDTDPLQFAIFDAIYPVGHEAPFFLIGDPKQAIYSFRGADIFAYMGA 319 Query: 434 RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 +TL N+RS G++++VN LF+ + F++ +I F V++A K ++ R V G Sbjct: 320 AQATKERHTLLQNFRSEAGLIDAVNALFASRELPFLYPQIGFNKVEAAPKEKS-RLVEAG 378 Query: 494 ETQPAMKMWLM----EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG----EALLMNGDD 545 + + +K+WL G+ GD + + AA+I L+ G G E L + ++ Sbjct: 379 QRKAPLKLWLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGADGKLTVEELRKDAEE 438 Query: 546 A------RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 R V DI+VLVR+ ++A ++ ALT IPSV L + ++FE+ EA E+L L Sbjct: 439 GSENWVQRAVEPRDIAVLVRANRQAKLMQRALTHRGIPSV-LCSAGNLFESDEAAELLRL 497 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 L AV P E+ LR ALAT ++G++ ++ L +DE W+ ++EEF Y W M Sbjct: 498 LSAVAQPGHESLLRGALATDLVGVSGTELARLMDDEKGWEEILEEFRSYHDTWNSGSCMS 557 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEP 718 M M R + + LLA GERRLT++LH E + +A A++ WL+ I E Sbjct: 558 MALQFMEKREVRKRLLAEPMGERRLTNLLHAIETIHQAQVNERLGMEAVISWLACRITE- 616 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--TNFRVQEQAFYHDRHSFEA 776 + ++RLE+D+ VQ+VTIHKSKGLEYP+V+LPF E A +HD Sbjct: 617 EPKKDEYEIRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEYAGKDEGALFHDEDG-RV 675 Query: 777 VLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSL--GVAPLVRRRGDKKGDTD 832 VLD+ + A+A R LAE LRLLYVALTR L GV D Sbjct: 676 VLDIGSEQMGEHKAQAAREALAESLRLLYVALTRGKHRTYLTWGVF------------KD 723 Query: 833 VHQSALGRLLQKGEPQ-------DAAGLRTCIEALCDDD---IAWQTAQTGDNQPWQVND 882 SAL LL GE A +R ++ L I D P++ +D Sbjct: 724 AGDSALHYLLHPGETPVKGQVTLSDADIRKRLDTLAASSAGRIEVLDLPAADLAPYRAHD 783 Query: 883 VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD----VDAAGVASVVEEP 938 +L +WRV S++ L H A+ +P D V+ V V EP Sbjct: 784 KKAPDLAPLPFTGAISRDWRVASFTSLSSHKHHTAE--LPDRDEGSPVEERPVHDV--EP 839 Query: 939 TLTPHQFPRGASPGTFLHSLFEDLDFT---QPVDPNWVREKLELGGFESQWEPVLTEWIT 995 T FP+GA G FLH +FEDLDFT + + P V+E+L+ GF W + + + Sbjct: 840 TGI-FAFPKGAKAGIFLHKIFEDLDFTRVGEQLSP-LVKEQLDKHGFAPDWSQAVRDMVQ 897 Query: 996 AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS-----AGC 1050 VLQAPL + ++L+Q+ + EMEF+ P+S + + +L +F AG Sbjct: 898 NVLQAPLGDGEIALAQVGLERRLTEMEFFFPLSH-VTSDRLREAAARFTAGHGTAGVAGL 956 Query: 1051 PP--------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 P L F V+GML GFIDLVF H GRYY++D+KSN LG Y Q A+ M Sbjct: 957 PVDLADLFSRLSFAPVQGMLLGFIDLVFEHGGRYYIVDWKSNHLGNTPGNYGQAALKKEM 1016 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 + + Y LQY LYT+AL YLR RI YDY+ HFGGV YLFLRGVD G+Y RP Sbjct: 1017 EENFYPLQYLLYTVALDNYLRLRIPGYDYDRHFGGVFYLFLRGVDGT--GNGVYADRPPR 1074 Query: 1163 GLIALMDEMF 1172 LIA + E+ Sbjct: 1075 ELIAHLAEVL 1084 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/212 (44%), Positives = 120/212 (56%), Gaps = 9/212 (4%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D L PL G LIEASAGTGKTFTIA +YLRL+L + V +LVVTFTEA Sbjct: 4 FDLLHTPLAGRNLIEASAGTGKTFTIAGVYLRLVL--------EQKFDVSRILVVTFTEA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 AT EL+ RIR+ + E L TD+ L E LL+ D ++A + L A R DEAA+F Sbjct: 56 ATKELKERIRNKLKEAENGFLTGATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDEAAIF 115 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQRML N FESG L + +L+ D+ + + D+WR +CY P E Sbjct: 116 TIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIAQDYWRINCYGQPEERIAAAGAAK 175 Query: 188 KGPQALLRDINRYL-QGEAPVIKAPPPDDETL 218 P++LL+ + R A VI PP D L Sbjct: 176 VSPESLLKLVQRVCGDPNAAVIPDPPADANEL 207 >UniRef50_Q480N9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480N9_COLP3 Length = 1286 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 381/1324 (28%), Positives = 612/1324 (46%), Gaps = 227/1324 (17%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + LD + L G+ LIEASAGTGKT+ I +YL R LTVE++L++TFT Sbjct: 24 QNLDAATIELTGKHLIEASAGTGKTYNITRIYL--------RLLLERELTVEQILLMTFT 75 Query: 66 EAATAELRGRIRSNIHELRIA-------CLRETTDNPLYERLLEEIDDKAQAAQWLLLAE 118 + AT ELRGRI + I R+A CL++ L +R+ +K Q L A Sbjct: 76 KDATQELRGRIDAFI---RLALSDWDSLCLKDAYFATLAQRI-----EKKQREFLLKRAL 127 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 +DEAA+FTIHGFCQR+LN AF SG+ F + + S + Q C D W R E Sbjct: 128 LFLDEAAIFTIHGFCQRVLNQYAFTSGLPFNANMAANSSEITLQVCQD-WYRSLAKSDHE 186 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 ++ W P + L ++ + G + D E++ + ++ R+ Sbjct: 187 CFMLLASYWATPDSFLSSFSKAI-GHTSTLSVV--DVESIEAEFI-VLVRLAAQTLTANS 242 Query: 239 AVGELDALIESSGID--RRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 + E ++ G D +R+ S W++ I + +E + + E K F D Sbjct: 243 DLFENGLILVKKGADQEKRRDELSQLKIWLESIIS---KELSLLDVGEGKVKMPDGFF-D 298 Query: 297 RTKAGGETPRHPLFEAIDQLLAEPLSIRDL-----------VITRALAEIRETVAREKRR 345 + T + L EA + ++ + ++ + IR+ V +K+ Sbjct: 299 GKRYARSTYKAELLEAFAPVKEVKEQVKKIANNINKARAYGIVKSGIYIIRQQVIEQKKA 358 Query: 346 RGELGFDDMLSRLDSALRSESG-----EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 L FDD+++ L + L+S+S ++LA + ++PVA+IDEFQDTDP+Q+ I + I Sbjct: 359 LNLLDFDDLINTLANCLQSDSSGDEHSQLLAKQLLAQYPVALIDEFQDTDPKQFGILQSI 418 Query: 401 WH----HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNS 456 ++ + L LIGDPKQAIY FRG DIF Y+ ARS H+ +DTNWRS P M+ Sbjct: 419 YYGDNAKKANAGLFLIGDPKQAIYGFRGGDIFAYLNARSGCDHHWLMDTNWRSTPQMIEG 478 Query: 457 VNKLFS-------------------QTDDAFMFREIPFIPVKSAGK-----------NQA 486 N+ F+ Q++ F F IP++PV + K ++A Sbjct: 479 YNQFFTYKRNGSSSEETVSNEVNKQQSESVFGFG-IPYLPVLAGKKSAQAQQVILDSDKA 537 Query: 487 LRFVF------KGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 L+F+ +T P +G+ G + +A CA +I LL Sbjct: 538 LQFIHFTNDETSNDTNP-------QGDKVSQGS-RPMLANWCANEIV----------TLL 579 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 + + V DI++LVR EA ++ AL + SV+LS+R ++F + +A+++L LL Sbjct: 580 ASKEQTGKVNPKDIAILVRDGAEARDIKHALQQAGLDSVFLSDRANLFHSQQAKQLLGLL 639 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 + V+ PE E +AL+ ++G +A + L DE A+ + F YR W+++G + M Sbjct: 640 KGVLLPENERLFVAALSCGLLGFDAKKLHQLQQDEMAYQTLKFAFVDYRTQWQRQGFITM 699 Query: 661 LRALMSARNIAENLLAT--AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP 718 A N+ NLL +R LT++LH+ E+LQ A +L L+ W Q Sbjct: 700 ------AINLMHNLLDVPQNNKDRCLTNVLHLFEILQAASVRLSQGQELLHWFEQQC-HL 752 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT------NFRVQEQAF--YHD 770 ++N ++RLESD L++++T H SKGLEYP V++PF F + ++ YHD Sbjct: 753 ETNDVEAELRLESDGDLIRLITQHGSKGLEYPYVFIPFACRHKDPLKFGNKSVSYLEYHD 812 Query: 771 RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 + + L L+ + E+ E AE +RLLYVA+TR+ C + Sbjct: 813 ANG-KLCLSLDGSKEAKKAMSNEAYAESIRLLYVAITRAERRCYVLCCAF---------- 861 Query: 831 TDVHQSALGRLLQ--------------KGEPQDAAGLRTCIEALCDDDIAWQTAQTG--- 873 H S LG+ LQ K + A G+R + C D+ + Sbjct: 862 DAYHLSPLGKTLQFQEQESIIKPLQVLKASAEHAIGIRE-VSLDCSIDLYLEKNDEAALH 920 Query: 874 --DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ--RGHGIAQ------DLMPR 923 N P + + ++ K ++R +W ++S++ L + R G++ D+ R Sbjct: 921 QPKNSPQEFANTEVSKFIGK-IER----DWWLSSFTALSRNIRHAGVSNPDRDTTDIANR 975 Query: 924 -LDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE---- 978 LD D+ + + +GA G LH + E DF++ P+W +E LE Sbjct: 976 QLDTDSEHTDIELLSAEQICFKLSKGAHTGNLLHDILEQTDFSE---PDW-QESLEKPLL 1031 Query: 979 -LGGFE---------SQWEPVLTEWITAVLQAPL-----------NETGVSLSQLSARNK 1017 G S L +W+ V+ AP +E L+ ++ Sbjct: 1032 AYGELNASNANSISTSFTSDDLIQWLEQVISAPFISSHHSALTTDSENAGCLADIAFNRT 1091 Query: 1018 QVEMEFYLPI-----------------------SEPLIASQLDTLIRQFDPLSAGCPPL- 1053 E EFY P+ + I++ ++ I + + P + Sbjct: 1092 LRESEFYFPMQGEGTNALANLLTDHRNRAERTDTGNSISTGRNSGISKTLNNTLKYPVML 1151 Query: 1054 -EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 + ++ GM+ GFIDL+F ++G+YYL DYKS+ LG+ Y A+ ++ + YDLQY Sbjct: 1152 PSYKKLSGMMHGFIDLIFEYQGKYYLCDYKSSHLGDSFQDYQFDALLDNVEKNYYDLQYL 1211 Query: 1113 LYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV--DKEHPQQGIYTTRPNAGLIALMDE 1170 +Y+LALHRYL+ + DYD HFGGV YL+LRG+ + EH G+Y + I +D Sbjct: 1212 IYSLALHRYLKQTLVDYDVNQHFGGVYYLYLRGMTTEPEHKGAGVYYRKITEQEINNLDA 1271 Query: 1171 MFAG 1174 +F+ Sbjct: 1272 LFSN 1275 >UniRef50_A7NB27 Exodeoxyribonuclease V, beta subunit n=21 Tax=Francisella RepID=A7NB27_FRATF Length = 1217 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 360/1303 (27%), Positives = 597/1303 (45%), Gaps = 225/1303 (17%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+ + LQG +IEASAGTGKTF I LY+RLLL + L +LV+TFT Sbjct: 2 DNLNANTITLQGRHIIEASAGTGKTFNITKLYIRLLL--------EKKLLPSNILVMTFT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 + AT E+ GR+ I ++ L TD E+ + + + L + ++DEAA Sbjct: 54 KDATQEIIGRVEKEIRDV----LASYTD--------EKKESDKENYKHLKRSLLEIDEAA 101 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFC+++L+ AF SG+ + + D S + + DF+R+H + Sbjct: 102 IFTIHGFCKKVLSEQAFASGIEMDVSMEVDTSDIFQKVVEDFFRKHINKSETNFGYLQIY 161 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 P+ L D+ ++ ++ ++ A + +K+Q +L+ Sbjct: 162 KLHTPEKFLDDLENIIRSNYEIL-----------TKQAISLDEFKILKKQ------QLEL 204 Query: 246 LIESSGIDR---RKFNRSN-QAKWID---KISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 I + I K + Q K +D ++ W + + N PE++ + D Sbjct: 205 FINNHDIVDDFLYKLGKGEPQGKRVDEYHRVLEWLKLD-NQTLFPENIS-----IITDGR 258 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDL----VITRALAEIRETVAREKRRRGELGFDDM 354 K + + P+F + +L I+ I +A +IR+ A+ K ++G L FDD+ Sbjct: 259 KISAKLIK-PIFIGVKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKDQKGVLDFDDL 317 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW------------- 401 +++L +++ +S E L ++ ++PVA+IDEFQDTD +QY I I+ Sbjct: 318 ITKLCQSVK-KSPE-LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHKGK 375 Query: 402 ----------------------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-- 437 + LL+IGDPKQAIY FRG DIFTY+KA+ Sbjct: 376 NLLTNGLNLKDTRLREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPE 435 Query: 438 HAHYTLDTNWRSAPGMVNSVNKLFSQTD---------DAFMFRE-IPFIPVKSAGKNQAL 487 +++DTNWRS M+ + N+LF + D +F + I + VK++ Sbjct: 436 ENQWSMDTNWRSTGEMIKAYNRLFYKQDYQSEEEGQIGTNIFSDGIGYQLVKASPDADKK 495 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 F +P + E D + +A +I L + + Sbjct: 496 TKDFDDNFKPINYFYYEVAEDDNKSDIDTNLALWTVNEITRLL--------------NTQ 541 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 V +DI++LV + ++A ++ AL + SVYLS RD+V+ + EA+E+L L++ + E Sbjct: 542 KVAENDIAILVENGKQAKIIQQALQAKNLSSVYLSQRDNVYHSQEAKEILALMEGINDLE 601 Query: 608 RENTLRSALATSMMGLNALDIETL--NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM 665 ++ L+ AL+TS++G A + ND AWD +E+ RQ W K G M + + Sbjct: 602 NKSMLKRALSTSLLGGRADKFISYIDENDVSAWDDEIEKAKSLRQQWHKYGFMAFIMQI- 660 Query: 666 SARNIAENLLATAGG-ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASS 724 I EN A ER +T+ILH++EL++ A + + + L++W + ++ S Sbjct: 661 ----IHENFTQKADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQL--NNTATSE 714 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF-----ITNFRVQEQAFYHDRHSFEAVLD 779 ++RLESD +L++I+TIH SKGLEY +V++PF F Y+D + V Sbjct: 715 GELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTVYK 774 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 + A+ E + E +RL YVA+TR+ C +GVA + +S L Sbjct: 775 IGKDDSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKY----------NNSEKSPLA 824 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-------AKT 892 R L G +D L + D + + + ++S+ + N A Sbjct: 825 RFL--GYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANY 882 Query: 893 LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF--PRGAS 950 + +L D+W + S+S + + Q+ ++D A +F +GA Sbjct: 883 ISKLENDSWEMLSFSKISKSK---VQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGAD 939 Query: 951 PGTFLHSLFEDLDFT-QPVDPNWVREKLELGGFESQWEPVLTE-------WITAVLQA-- 1000 G LH++ E DF+ +D N ++E+++ +++ V E W+ L+A Sbjct: 940 MGNILHNVLEHTDFSLGEIDGNLLQEQMD------RYKVVAAEDFDNLKLWLEECLEAHI 993 Query: 1001 --------PLNET-----------GVSLSQLSARNKQVEMEFYLPI-SEPLIASQLDTLI 1040 LNE+ G L + E EFY P+ +E L + + ++ Sbjct: 994 PYIDTSFSSLNESIQYGLFDIKDKGFCLKTIPNSKTLKEAEFYFPVKNENLYKTNILEIL 1053 Query: 1041 RQFDPLS----------AGCPPLEFMQVR-------------------GMLKGFIDLVFR 1071 +++ L+ G P + +R GML GFIDL+F Sbjct: 1054 QEYRELTKLKTYSHSYVGGNLPTNYQDLRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFE 1113 Query: 1072 HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDY 1131 +EG++Y+ DYKSN+LG+ Y QQAM Q+ YDLQY +Y++AL +YLR I Y+Y Sbjct: 1114 YEGKFYVADYKSNYLGDTLEDYNQQAMQEKNQSSFYDLQYLIYSVALDKYLRQNIESYNY 1173 Query: 1132 EHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 E HFGGV Y +LRG+ + G+Y RPN +I + +F G Sbjct: 1174 EKHFGGVYYFYLRGMKDGY---GVYRARPNLEIINKLASLFNG 1213 >UniRef50_A6DNF2 Exodeoxyribonuclease V, 135 kDa subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF2_9BACT Length = 1198 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 383/1248 (30%), Positives = 603/1248 (48%), Gaps = 144/1248 (11%) Query: 8 LDPLRL--PLQ--GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + PL L P++ G LIEASAGTGKT++IA ++L +L + V E+LVVT Sbjct: 2 MQPLDLTQPIKDSGITLIEASAGTGKTYSIANIFLHFIL---------KGRDVSEILVVT 52 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTD-NPLYERLLEEIDDKAQAAQWLLLAERQMD 122 FTE AT ELR R+R N+ + + + T+ +P + ++E + + + L LA D Sbjct: 53 FTEDATKELRDRVRKNLSKALLQIRGDVTEEDPTLKAIIEIYPHQDENRRRLELALVNFD 112 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 +A + TIHGFCQRML NAFES F+ +L+ D+S L + DF R Y Q Sbjct: 113 QAVISTIHGFCQRMLKENAFESHSTFDMELVTDDSKLIDELVEDFIRIESYD-----HQS 167 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 F + Q L+ + + +G+A + +A D L +R + I+ K D + Sbjct: 168 AF-NYDAEQ--LKSLIKLYKGQA-IEEAEEFD---LEARKQKF---IELYKAHGHD---Q 214 Query: 243 LDALIESSGIDRRKFN---RSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 ++ L + G+ R + N S +I+ + + + + L +++ SQ + K Sbjct: 215 IEVLQNNKGMSRTQKNPYLLSKFPDYIEHLKLYCKGDERPTAL-KAIVALSQSSINSNMK 273 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 + P H LFEA DQ LAE S + + R L RE +K + + FDD++ +L Sbjct: 274 SKKVPPTHELFEAADQ-LAECYSDK-FIKQRFLKSFREKYEAKKEKLNVMTFDDLIIKLH 331 Query: 360 SAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW---HHQPETALLLIGDP 415 AL R ++ L + IR F VA++DEFQDTDP QY+IF+ ++ H E A +IGDP Sbjct: 332 EALVRDQANGPLHSLIRDNFKVALVDEFQDTDPIQYQIFKSLFGDKSHATEHAFYMIGDP 391 Query: 416 KQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ--TDDAFMF--- 470 KQ+IY FRGADIF Y++A+++ +TL N+RS MV++VN FSQ D+AF F Sbjct: 392 KQSIYRFRGADIFAYLQAKNDADEQFTLQDNYRSEAAMVDAVNHFFSQRGADEAFAFAPA 451 Query: 471 ---REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM--EGESCGVGDYQSTMAQVCAAQ 525 I F PV + L+ G+ + W E + D Q+ M + + Sbjct: 452 HESEGITFEPVGAKADKNTLKIT--GQPESLQLRWYRADEDKDLSKTDLQNLMPSLVTEE 509 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 I L Q+G A ++ + ++ DI +LV +A ++ +L IP+V ++ Sbjct: 510 IISLLNKSQQGSAYF-ESEEKQALKPGDICILVNKNNQATAMKQSLNENGIPAV-VAKSG 567 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 +VF++ EA + L AV+ P ++++L L + + L A +I+ L D+ ++++ E Sbjct: 568 NVFKSAEANALERFLNAVIDP-KDSSLIPLLLSELFTLTAEEIKEL-GDQERFELLTEFV 625 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESE 704 D +R+ W KRG + L+ + + L GER L+++ + E+L +E ++ Sbjct: 626 DYHRE-WEKRGFLRTLQKFIDRHQLYTRTLEQDQGERSLSNLYQLREILHEEEQSKGLGP 684 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 L+R+L Q + D RLE+D + V+I+TIHKSKGLE+P+V+ P++ + +E Sbjct: 685 SGLLRFL-QEKTQADKVDDQYLQRLETDDNAVKIMTIHKSKGLEFPVVFCPYMWSESFEE 743 Query: 765 QAF-----YHDRHSFEAVLDLNAAPESVDLAEAER-----------LAEDLRLLYVALTR 808 ++ + ++ FE D A S+D E R L+E LRLLYVALTR Sbjct: 744 SSYGSFGESNKKNDFEYHDDSRLASLSIDPDEEFRQEKRYLWRREILSEKLRLLYVALTR 803 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ-----DAAGLRTCIEALCDD 863 S C L GD +V + L P+ A G T +++ Sbjct: 804 SAHRCYLYW-----------GDVNVSNTPFEYL---ANPEVTGADIADGTSTKLDSSQRR 849 Query: 864 DIAW--QTAQTGDNQPWQVNDV-----------STAELNAKTLQRLPGDNWRVTSYSGLQ 910 I W Q A T + ++ ++ + EL + W SYSGL Sbjct: 850 SI-WQDQVANTSHTKFCELGNIDQMSPCFYRPKNDLELRKPKELKFEFPIWVDGSYSGL- 907 Query: 911 QRGHGIAQ---DLMPRLDVDAAGVASVVEEPTLTP---HQFPRGASPGTFLHSLFEDLDF 964 R H Q D P LD + + + E + P FPRGA PGT +H +FE +DF Sbjct: 908 IRSHDKVQFTPDQAP-LDDEGEKIPNAEPEEEIIPEGFFAFPRGAVPGTCIHEIFEHIDF 966 Query: 965 TQPVD---------PNWVREKLELGGFESQWEPVLTEW---ITAVLQAPLNETGVSLSQL 1012 ++ + EL E + + + + VL L +L + Sbjct: 967 QDERGWEEIIADRLKHYQLHETELANQEEFFAKRIADCKDMLRKVLSTTLVHNDFALDSI 1026 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQF-DPLSAGCP--------PLEFMQVRGMLK 1063 + E+EF+ P+ + QL L + F S G P L + G Sbjct: 1027 PRHQRLDELEFHYPVKD----IQLKKLQKLFLAHYSDGFPHDYSLDLEKLNYRMEEGYFN 1082 Query: 1064 GFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 G IDL F+ +G++Y++D+KSN+LG Y +A+ A++ H Y LQY +YTLA H YL Sbjct: 1083 GSIDLSFQKDGKFYIVDWKSNYLGPRYEDYHGEALQRAVREHFYFLQYHIYTLAFHLYLE 1142 Query: 1124 HRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEM 1171 +A YDY+ HFG IYLF+RGV+ Q G++ R L+ M ++ Sbjct: 1143 KYLAGYDYDQHFGACIYLFVRGVEP-GAQSGMHYDRVPKALVEDMKKL 1189 >UniRef50_C7PDT4 Exodeoxyribonuclease V n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT4_CHIPD Length = 1152 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 369/1196 (30%), Positives = 583/1196 (48%), Gaps = 136/1196 (11%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 +PLQ LIEASAGTGKT++IA L LRL+L G L+++E+L+VTFT+AA AEL Sbjct: 15 VPLQDSNLIEASAGTGKTYSIAILVLRLVLENG--------LSIKEILMVTFTKAAVAEL 66 Query: 73 RGRIRSNIHE-LRIACLRETTDNPLYERLLEEIDDK---AQAAQWLLLAERQMDEAAVFT 128 RIR + +I+ +ET D ++ RL+EE ++ A Q L A +DE AV T Sbjct: 67 EERIRLFVRTAYKISQGQETRDENIF-RLVEEAVERNGLAAVQQQLRDAVLFLDETAVLT 125 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE--T 186 IH FCQ+ LN AFE+ LF ++I+D L + FWR++ L + + V+E Sbjct: 126 IHSFCQKTLNEFAFETDQLFGAEMIQDTKTLIAEEVQKFWRKYVTTLHIRLLEKVWEPDM 185 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR-------DA 239 +G L N ++ G+ P R+A +KQ+ + DA Sbjct: 186 MEGINVAL---NEHMGGKRYYAYQP-------GKRYA--------IKQKEQEEWLHQLDA 227 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 + + A +E +D N + + + + +A+ T + E F + + R Sbjct: 228 IDDKKAAVEKILMDY-VINERETLRGLCEGNRYAK--TALLPCMDDPELFIKTVADKRNS 284 Query: 300 AGGETPRHP-LFEAIDQLLA---EPLSIRDLVITR----ALAEIRETVAREKRRRGELGF 351 A + P + +D++ E + VI+R A+ EI V K+R L + Sbjct: 285 AKYISTLLPDMLAHMDEVAVVDEERKGVVQQVISRLYCFAIEEIAAGVKGFKKRNNLLSY 344 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLL 411 DDM++ L +L + L +R ++ +DEFQDTD QY IF + + T L Sbjct: 345 DDMITNLHKSLVDRNNPKLEEVLREKYKAVFVDEFQDTDRMQYEIFEKAFGES--TILFY 402 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD--DAFM 469 IGDPKQ+IYA+R ADIFTY KAR+ V Y ++ N+RS+ + ++N+ F D F Sbjct: 403 IGDPKQSIYAWRKADIFTYFKARASVQHVYGMNRNFRSSEPFIAAMNQFFLPVPGFDTFY 462 Query: 470 FR----EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQ 525 F I +I V S N +F+G+ +P + + + + + +++ AAQ Sbjct: 463 FEGEGSAINYIKVDSPESNTK-GLLFRGD-EPDVPISVFNTSNS------TELSESVAAQ 514 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 + L++ GE + + D+ RPV+ SDI +LVR+ ++ +V+ L L IP+V + + Sbjct: 515 VAALLRS---GEYFIGDEDERRPVKPSDIGILVRTGRQGREVKAQLARLGIPAVTVDDA- 570 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 V ++ EA +L+L++A++ P+R +++ AL + GL + TL++ +V + F Sbjct: 571 KVLQSEEATYLLYLMEAMLAPDR-SSINRALLSPFTGLKLESVLTLDD-----EVTLGLF 624 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLL--ATAGGERRLTDILHISELLQEAGTQLE- 702 Y+ W++ G+ + ++ N+ LL T GER ++++ ++EL+ + ++ Sbjct: 625 GNYKNRWQQDGIYTAMMDFVTDFNVRNVLLHAHTESGERIISNLFQLTELVHQIQSRKNL 684 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV 762 S LV WL + I + + R+ESD+ V IVTIHKSKGLEY +V P++ Sbjct: 685 SMTELVSWLKRGIDGMATEGDEYEQRMESDEEAVNIVTIHKSKGLEYKIVMAPYLDFVEN 744 Query: 763 QEQAFYHDRH----SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 + AF+ R + V E + E+ RLLYVA+TR V+ C Sbjct: 745 KYIAFFSFRDPLTGDYVGVEKKRMTDEQQASYARQAEQENRRLLYVAITRGVYKC----- 799 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 V R K T LL E AA I + Q G+ Sbjct: 800 -FVFRNNYHKKST---------LLTFLEALVAAAPSPDIIRFEEGMPVAPEQQAGN---- 845 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEP 938 +V ++ + + L NWR SY+ L + +L R AS E+P Sbjct: 846 KVLPLAPVDPDMPVRFVLKEQNWRKMSYTMLAAKAE---HNLRTR--------ASQKEDP 894 Query: 939 --TLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLE--LGGFESQWEPVLTEW 993 T H RGA G LH LFE+++F++ W+ E + + G + + P+L + Sbjct: 895 YETFIFHTLKRGAKTGNLLHFLFENINFSEDSRWEKWITETVRRFVPGQQDLYGPMLRQL 954 Query: 994 ITAVLQAPLNETGVS--LSQLSARNKQVEMEFYLPIS-------EPLIASQLDTLIRQFD 1044 + VLQ + G + L+ + + E EF P+S L + ++R+F Sbjct: 955 LEHVLQTDITVDGRTFPLAAIIWHKRIPEFEFDFPVSAFFPDMLNGLSDDRTSVVVRRFH 1014 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 G LE G++ G +DL F HEGRYY+LD+KSN+LG YT A++AAM Sbjct: 1015 --EQGSSELE-----GIMNGKMDLFFEHEGRYYILDWKSNYLGGTPEDYTPTAVSAAMNE 1067 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRP 1160 + Y LQY +YTLA +YL R+ +DYE FGGVIY F+RG+ K GI+TT+P Sbjct: 1068 NNYHLQYLIYTLAAKKYLESRLHAFDYETQFGGVIYCFVRGIRKGQ-STGIFTTKP 1122 >UniRef50_A9M3L9 Exodeoxyribonuclease V beta subunit n=30 Tax=Neisseria RepID=A9M3L9_NEIM0 Length = 1204 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 400/1253 (31%), Positives = 579/1253 (46%), Gaps = 175/1253 (13%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS + DPL +P+ G LIEASAGTGKT+ IAAL+ RL++ VE +L Sbjct: 1 MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIV--------LEQKNVERVL 52 Query: 61 VVTFTEAATAELRGRIRSNIHEL-------RIA--------------CLRETTDNPLYER 99 VVTFT+AATAEL+ R+R+ + ++ IA C + Sbjct: 53 VVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPA 112 Query: 100 LLEEIDDKAQAAQWLL---LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE 156 LL++ K + ++ A Q D AA++TIHGFCQR+L AF F+ +L E++ Sbjct: 113 LLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEED 172 Query: 157 SLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDE 216 DFWR P +A + F+ PQ +L I YL + P D + Sbjct: 173 GDRLLIPAQDFWRERVSNDP-VLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLK 231 Query: 217 TLASRHA----QIVARIDTVKQQWRDAVGELDALI-----ESSGIDRRKFNRSNQAKWID 267 A R+A Q V R+ + EL+A + +G RK + N K + Sbjct: 232 Q-AQRNAETSWQTVCRL----------LPELEAGFWRIHPDLNGNSYRKNSFGNLFKELA 280 Query: 268 KISAWAEEETNSYQLPESLEKFSQRFLE---DRTKAG---GETPRHPLFEAIDQLL---- 317 + SA + QLP + R L+ D+ +AG G+TP +F + +L Sbjct: 281 QKSA-------AGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFGR 333 Query: 318 --------AEPLSIR---DLV--ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 E IR DL+ + R+LAE+ K+ R E GFDD+L + +AL Sbjct: 334 DLNALEEAEEATMIRLQLDLIEYLNRSLAEM-------KKSRRERGFDDLLLDVHTALTD 386 Query: 365 E-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 E LA A+ + A+IDEFQDTDP QY IF++I+ Q L L+GDPKQAIY+FR Sbjct: 387 NPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIFIAQ-NRPLFLVGDPKQAIYSFR 445 Query: 424 GADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 GADI+ Y++A + YTL TN+RS ++ S+ LF + F+ I + V +A Sbjct: 446 GADIYAYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARA 505 Query: 484 NQALRFVFKGETQPAMKM-WLME--GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 L +PA+++ WL E E + A CA +I L G L Sbjct: 506 ESRL-----SPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGR-LN 559 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 G P+++ DI+VLVR+ EA V AL ++ SV LS R+SVF + EA + L+ Sbjct: 560 FKG---YPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLS-RESVFASPEAAALSALI 615 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 + P R TLR L + + G +A + N +E E W + G+ Sbjct: 616 GFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAA 675 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 ++ I LL+ G R LT+ + ELL Q + AL +WL I D+ Sbjct: 676 MQQFSQTHGIETRLLSRNNG-RSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLADN 734 Query: 721 NAS-SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--------TNFRVQEQAFYHDR 771 N ++ +RLESD+ LV+IVT+H SKGL+YPLV+ PF +++++ Q+ Sbjct: 735 NGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTE 794 Query: 772 HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831 +A L + + D E +AE LRLLYVALTR+ ++ A T Sbjct: 795 LLAKAQLSEDEQKQYAD----EEMAERLRLLYVALTRAEEQLNIYAA----------YST 840 Query: 832 DVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA-----WQTAQTGDNQP--------- 877 + + L L++ G PQD+ A D IA W+ + DN P Sbjct: 841 NTADTPLAYLIE-GSPQDSRETVRQTYAQEKDGIAMLKRNWR--RLADNAPAGTDFVFTE 897 Query: 878 -------WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ---QRGHGIAQDLMPRLDVD 927 ++ N TAE A ++ R TS++ L Q G +D P LD Sbjct: 898 DAPPPAAYRGNADQTAEFAANSIPERGFRFVRHTSFTTLSRHTQTPDGSEEDACPSLDAA 957 Query: 928 AAGVASV-VEEPT----LTPHQFPRGASPGTFLHSLFEDLDFTQPV--DPNWVREKLELG 980 V ++ E PT ++ H FP+G G LH + E+ F Q ++ +KL+ Sbjct: 958 ETSVPAMPSETPTASDGISIHNFPKGTQAGLCLHEILENFKFGQAAAGQETFITDKLKKY 1017 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGV-SLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 GFE W P + E A + PL TG LS + + + EM F L + + D Sbjct: 1018 GFEEIWLPAVAEMAEACQKTPL--TGAYGLSDILSECRCPEMGFTLHTEDFGLKRLRDWF 1075 Query: 1040 ----IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYT 1094 IR + A L+F V G L GFID+V + +G ++DYKSN LG D+SAYT Sbjct: 1076 ARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGTDASAYT 1135 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 QQAM A+ H Y LQ +Y +A RY + R V YLFLRG+D Sbjct: 1136 QQAMDEAVAHHHYYLQALIYAVAAARYFKLR----GQPPAAVSVRYLFLRGLD 1184 >UniRef50_C1SHH7 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH7_9BACT Length = 811 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 273/861 (31%), Positives = 442/861 (51%), Gaps = 77/861 (8%) Query: 335 IRETVAREKRRRGELGFDDMLSRL-DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 + E + K++ +DD+++R+ +S + +E ++ ++ +F A+IDEFQDTDP Q Sbjct: 1 MEEVLETHKQKNNIQSYDDLITRMRNSVMENEGHGNMSISVNRKFNAALIDEFQDTDPHQ 60 Query: 394 YRIFRRIW--HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAP 451 Y IF ++ + +P +IGDPKQAIY+FRGAD++ Y+KA SE YTL N+RSAP Sbjct: 61 YDIFNTVFGRYGKP---FFMIGDPKQAIYSFRGADVYVYLKAASEEGNQYTLTKNFRSAP 117 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 +V++VN F Q ++AFM I +IP S G ++ L + QP M +W E Sbjct: 118 ELVDAVNSFF-QRENAFMEPRIEYIP--SVGGHKELALTVAEKPQPHMIVWETEKTK--- 171 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 +A A I + L G A + + + V+ SDI+VL R+++E V++AL Sbjct: 172 ---PEEIALSTARHISELLNKSSYGSAHI----NGKAVKPSDIAVLCRNKKEMTMVKEAL 224 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 T +P+V +S ++VF + EA EM+ +L AV++P ++ +++ALA+S G A +I + Sbjct: 225 TYCRVPAV-VSGSENVFSSDEAVEMVNILSAVISPFSQSHIKTALASSAFGYTAKEIYHI 283 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 + WD + EEF Y + RG PM + S R + + L GER+LT+++HI+ Sbjct: 284 TETDQ-WDDITEEFRNYNDMISLRGFAPMFFHMASVRKLYKRLAKLPSGERKLTNLIHIT 342 Query: 692 ELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 EL Q+ + + ++RW+ + I + +++++SD++ V I+TIHKSKGLEY Sbjct: 343 ELAQQFEANRKAAPQDILRWMKEKISNAEMRDEESELKMDSDENAVTIITIHKSKGLEYN 402 Query: 751 LVWLPFIT----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVAL 806 +V+ PF+ N + + A YH F +LD+ E+++ + E E LR+ YVAL Sbjct: 403 IVYTPFLMFSRGNNKRPDYAKYHKEDKF--ILDVAGTDEAIEKTQQEEQQEKLRIAYVAL 460 Query: 807 TRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ-DAA-------GLRTCIE 858 TR+ C G+ G +SAL L+ + + D+ G I+ Sbjct: 461 TRAKSVCFTAW-------GEGTGHD---KSALAYLINGEQSKFDSGRLHSFFRGSNVAIK 510 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA- 917 L D A QT + + QP N T+E+ W++ S+S L + Sbjct: 511 PL--PDTAVQTYKGSEIQPTGKNRTFTSEITPP---------WQINSFSRLIHSSSSVRD 559 Query: 918 --QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF---TQPVDPNW 972 Q M D++G + FP+GA GT LH E+ DF + Sbjct: 560 TDQFTMKDETSDSSGRLDIF--------TFPKGAKAGTCLHECMEETDFENFSALSVAET 611 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 V E+L+ F++ + P +T+ I +L ++ G L L + EMEF + ++P Sbjct: 612 VEERLKAFSFDTDFTPAVTQNILTILNKDMH--GTCLKDLKQGDYIHEMEFQIA-TKPFR 668 Query: 1033 ASQLDTLIRQF--DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDS 1090 + + R + + L F ++G + GF DL+F G+YY+LD+KSN LG Sbjct: 669 PEPVSEIFRNSGQNDYADAASTLSFDAMQGFMNGFADLIFCQRGQYYVLDWKSNHLGMTP 728 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEH 1150 Y+ + M A M Y +Q +YTLALH +L+ + Y Y+ H GG IY+F+RG+ E Sbjct: 729 ENYSMERMHAEMLGSHYYMQMHIYTLALHMHLQRYLKGYSYDKHMGGGIYVFMRGI-HEK 787 Query: 1151 PQQGIYTTRPNAGLIALMDEM 1171 +GIY RP I ++E+ Sbjct: 788 GNEGIYFHRPEKDTICRLEEL 808 >UniRef50_C4GIJ8 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIJ8_9NEIS Length = 1220 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 377/1246 (30%), Positives = 571/1246 (45%), Gaps = 159/1246 (12%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+PL +P+ G LIEASAGTGKT+ IAAL+ RL+L S VE++LVVTFT+A Sbjct: 7 LNPLTIPVHGTHLIEASAGTGKTWNIAALFTRLVLLEQQS--------VEKILVVTFTKA 58 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEE--IDDKAQAAQWL-------LLAE 118 ATAEL+ R+R+ + + + L+ T + +L + +DDK + +L L +E Sbjct: 59 ATAELKTRLRARLDQA-LTALKRTPNAQTQPEILRQNSLDDKNRPDDFLFNLLSQALASE 117 Query: 119 RQ-------------MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES-LLRYQAC 164 Q D AA++TIHGFCQR+L AF F QL ED + A Sbjct: 118 SQDRLQLRLTAAISNFDNAAIYTIHGFCQRILQDFAFYCQAPFNIQLNEDPNDNPNLTAI 177 Query: 165 ADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ 224 D+WR P P + AQ+V++ + P+ L+ ++ YL P ++ P+ +A Q Sbjct: 178 QDYWRTQIAPNPVQ-AQLVYQHNQTPEKQLQALSPYL--ARPYLQFRQPESSHIAQTQQQ 234 Query: 225 IVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRS---NQAKWIDKISAWAEEETNSYQ 281 V Q L ++++ +N + ++ + + S T Sbjct: 235 FQQAWQHVCAQLPQIQAAFWQL--HPHLNKQSYNAARCEDRFAQLHQFSGCPSPATIWQL 292 Query: 282 LPESLEK---FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI---------- 328 L ES F+ FL+ + ++ + QL AEPL++ + + Sbjct: 293 LTESKHTQAIFTAEFLQSKANQDKKSKQK------IQLPAEPLALINNTLGALATAAQRC 346 Query: 329 ----TRALAEIRETVAREKRRRGELG--------FDDMLSRLDSALRSES--GEVLAAAI 374 +AL ++ + R + E FDD+L + AL E + LA A+ Sbjct: 347 IQAQEQALIQLAHNIIHYLRTQNEANKKTSPSRQFDDLLLDVYHALSPEKPHAQALARAL 406 Query: 375 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP----------ETALLLIGDPKQAIYAFRG 424 + A+IDEFQDTDP QY IF+ + P +TA ++GDPKQAIY+FRG Sbjct: 407 SANWQTALIDEFQDTDPLQYAIFQAAFMQPPRQPENKCNQNKTAFYMVGDPKQAIYSFRG 466 Query: 425 ADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG 482 ADI+ Y+ A + +TL N RS +++++N LFS+ + F +IP+ P ++A Sbjct: 467 ADIYAYLAAAEHIPPANRHTLSQNHRSHAALIHAINALFSR-PNPFALDKIPYHPARAAR 525 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST-MAQVCAAQIRDWLQAGQRGEALLM 541 L GE P WL + + D + AQ CA +I L A +G+ Sbjct: 526 SQSKLP---SGEA-PLRLTWLNQDPTADDSDTLTQRAAQWCAQEIAVTLHAHAQGKT--- 578 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 P+ A I++LVR+R+E ++ L I SV LS RDS++ E Q + L+ Sbjct: 579 ------PISAGQIAILVRTRKEGTLMQRQLKTHHIQSVLLS-RDSIYAEEETQAVYALIS 631 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 ++ P+R L L+ + AL I+ LN +E + + Q W++ GV L Sbjct: 632 FILNPQRTQHLIYLLSGCLYNHTALQIQQLNQNEAQLTQWTDAANQAAQTWQQHGVYTAL 691 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 + + AE L + +R LT++ I E+L + + AL +WL Q I ++ Sbjct: 692 QQFLRQFQ-AETTLLSQRNDRTLTNLHQILEILAAQDEKGQPPSALQQWLGQQIQASQNH 750 Query: 722 ASSQQ---MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ---EQAFYHDRHSFE 775 A+ Q +RLESD++LV+IVT+H +KGL+YP+V+ PF+ R Q E H H + Sbjct: 751 ANPQDHALLRLESDENLVKIVTMHAAKGLQYPVVYCPFVWKARNQQPPEWQIIHQNHQAQ 810 Query: 776 AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 + A+ E+ +EDLRLLYVALTR+ ++ +A + Sbjct: 811 LIHKTQLTDSDQQQAQTEQRSEDLRLLYVALTRAEEQLNIYIASYPQTEN---------- 860 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDI--AWQT--AQTGDNQPWQ--------VNDV 883 S L L+Q +P+ + L +WQ AQ ++ W + Sbjct: 861 SPLAYLIQHQQPEKGKSKKDEYAHLQAQAYRQSWQNFIAQHPEHIQWHDTLTLPTYTGSL 920 Query: 884 STAE--LNAKTLQR---LPGDNWRV---TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV 935 T+E N T R +P ++R TS++ L + + P LD Sbjct: 921 KTSEPQTNEPTTYRATPIPPRSYRSPQHTSFTALSRHSTTQPTEHTP-LDPSEQTTQPQN 979 Query: 936 EEPTLTPH------QFPRGASPGTFLHSLFEDLDFTQPVDPN--WVREKLELGGFES-QW 986 + +L P QFP+G + G LHSL E F QP N ++ L+ S QW Sbjct: 980 PQGSLKPDDPPTIAQFPQGTAAGICLHSLLERYPFAQPGRQNLPLIQTTLDQHNINSQQW 1039 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 + + + I PL SLS L +N E F L + S L T Q L Sbjct: 1040 QDTIAQLIEDTRHTPL-LPRTSLSTLPPQNILTEFGFLLHTRNFTLGS-LKTWFAQHSKL 1097 Query: 1047 ----SAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 +A L F V+G + G+IDL+ + E G +LDYKSNWLG S YTQ A+ A Sbjct: 1098 PPEITAAAQNLSFRDVQGYINGYIDLLAQTETGDTLILDYKSNWLGNSPSDYTQAALNQA 1157 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 + H Y LQ LY +A RYL R A H + YLFLRG+D Sbjct: 1158 IAQHHYALQALLYAIATARYLTSRNAQPQTIH----IRYLFLRGLD 1199 >UniRef50_B2I7Y5 UvrD/REP helicase n=11 Tax=Xanthomonadaceae RepID=B2I7Y5_XYLF2 Length = 1243 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 405/1312 (30%), Positives = 580/1312 (44%), Gaps = 221/1312 (16%) Query: 9 DP-LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 DP L LPL G RLIEASAGTGKTFT+A L RL++ G + +L VTFTEA Sbjct: 6 DPYLTLPLHGVRLIEASAGTGKTFTMATLVTRLVVERG--------WRIGHILAVTFTEA 57 Query: 68 ATAELR----------GRIRSNIHELRIAC------LRETTDNP---------------- 95 AT ELR R+ EL + + T +P Sbjct: 58 ATQELRTRIRERLILAARLVPQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVTNSASP 117 Query: 96 ----------LYERLLEEIDDKAQAAQWLLL-AERQMDEAAVFTIHGFCQRMLNLNAFES 144 + L D+ A L A ++D AA+FTIHGFC R+L +A + Sbjct: 118 EPPDVVLTLQILRTHLAATDETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHT 177 Query: 145 GMLF-EQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQ- 202 G F L+ + L ++ AD WR+ P I ++ G L +D+ L Sbjct: 178 GQSFIPPTLLASDRDLLHELAADIWRQEIAD-PEAIQDLIHLWPAGAPMLAQDLTDLLYQ 236 Query: 203 ---GEAPVIKAPP--PDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKF 257 AP + AP PD A + T++ W+ L + + ++ + Sbjct: 237 PHLSPAPSLAAPVVLPD--------AALAVAETTLRHLWQTEGAALRSALHTALEEGVLN 288 Query: 258 NRSNQAKWIDKISAWAEE---ETNSYQLPE-SLEKFSQRFLEDRT--KAGGETPRHPLFE 311 +S +A ++ + W E N+Y P L+ + L+ T + G +P P+ E Sbjct: 289 KKSYKADALNDLWDWMERWSLAPNAYPEPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSE 348 Query: 312 AIDQLLAEPLSIRD-------LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 A+ L SI + R A R + KR+R +DD++ R+ AL Sbjct: 349 AVQHYLDALTSIETARAQHRLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDG 408 Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-------ALLLIGDPKQ 417 L ++R ++ +A++DEFQDTD Q+RIF ++ AL LIGDPKQ Sbjct: 409 PHRLALVRSLRQQYRMALVDEFQDTDVAQWRIFHHVFGDTEHAHTADLTPALFLIGDPKQ 468 Query: 418 AIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA-FMFREIPFI 476 AIY FRG D+ TY+ A + L+ N+RS P ++ ++ L++Q DA F+ I F Sbjct: 469 AIYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFH 528 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEG--ESCGVGD--------YQSTMAQVCAAQI 526 PV+ + G PA+++W +S G ++ C I Sbjct: 529 PVQPGTHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAI 588 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 WL Q G ALL D RPV A DI+VLVRS +EA ++ AL IP+V R S Sbjct: 589 HQWLADAQTGRALL----DGRPVGAGDIAVLVRSHREATLMQQALARAGIPAVAAGKR-S 643 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 + T EA E L LL A++ E LR+AL+T ++GL A I T ++D V + Sbjct: 644 LLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIATFDHDS----VASRHWQ 699 Query: 647 GYRQIWRKR-------GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 WR+R G++ L AL +AR LL+ GERRL++ L + ELLQ+ Sbjct: 700 RQALHWRERLHSGGPLGLLTDLCALHAAR-----LLSLFDGERRLSNYLQLGELLQQVHL 754 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 + H LV WL++ I E ++ +Q +RLESD VQIVT+HKSKGLEYPLV+LP++ Sbjct: 755 RALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFLPYVAI 814 Query: 760 FRVQ----EQAFYHDRH---SFEAVLDLNAAPESVDLAEA---ERLAEDLRLLYVALTRS 809 R HD LD APE A E+ AE+ RLLYV LTR+ Sbjct: 815 GRSHAGPGRYCVVHDAQQGRCLHWCLD-KQAPEWQRAETAWKQEQRAEEARLLYVGLTRA 873 Query: 810 VWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT 869 + + ++AL LL G+PQ I + T Sbjct: 874 KHALWIATGTFYQ----------TERTALWPLL--GDPQAVP---------AQPGIVFDT 912 Query: 870 A-------QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR--------GH 914 A + QP V TA+ A +W V S++ L G Sbjct: 913 AVPPAILPRLTPEQPHSVPPARTAQRGALL------SDWWVYSFTQLAHAKAEPAPDGGR 966 Query: 915 GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP-----RGASPGTFLHSLFEDLDF----- 964 IA+ L D + A +++P L + P G G LH +FE DF Sbjct: 967 RIAEPLTGGQD-EPAWPQDAIQQP-LPGSEVPADPRFTGIRFGVALHEVFERTDFLAWST 1024 Query: 965 ---TQPV-------------DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVS 1008 PV +V E +E G + P++ +T+VL GV Sbjct: 1025 WRANVPVPATERGVLLQALRGSGYVAEDVEAG--IALLTPLVGHTLTSVL-----PEGVR 1077 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVR---GMLKGF 1065 L + ++ E+EF I A+ +D L+ F R G++ G Sbjct: 1078 LCDVPTTERRPEIEFQFVIQ----ATAVDALLALLHDHGLLQQRQSFGMRRRLEGLMTGM 1133 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL++RH GR+Y+LDYKSN L + YT ++ AM YDLQ +YT+ALHR+LR R Sbjct: 1134 IDLIYRHAGRWYVLDYKSNRLPD----YTPAHLSVAMTDSEYDLQALIYTVALHRWLRFR 1189 Query: 1126 IAD-YDYEHHFGGVIYLFLRGVDKEHPQ-QGIYTTRPNAGLIALMDEMFAGM 1175 + D YDY GG+ YLF RG+D P G+YT LI +D MF+G+ Sbjct: 1190 LRDAYDYARDMGGIRYLFCRGMDATRPNAAGVYTQSFAPALIEAVDAMFSGV 1241 >UniRef50_D1N1Q3 Exodeoxyribonuclease V n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q3_9BACT Length = 1235 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 391/1302 (30%), Positives = 585/1302 (44%), Gaps = 200/1302 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V E LD L PL+G LIEA+AGTGKT+ I L +R A R + +E+LL Sbjct: 1 MTPVQE-LDSLNCPLRGLFLIEAAAGTGKTYNIQNLVVR--------AVLERDIPIEKLL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLR-----ETTDNPLYERLLEEIDDKAQAAQWLL 115 VVT+T AA AEL GRIR + A + + L R LE + + + + L Sbjct: 52 VVTYTRAAAAELAGRIRQVLSGTLAALEKRLPPESGREAQLVARALETLTSE-ECRKRLR 110 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 A D A V TIHGFCQ++L NAFESG+LF ++L D + L + D +RR YP Sbjct: 111 TALFDFDAATVTTIHGFCQKVLRENAFESGILFSRELDNDCAELLEKLADDLYRREFYPD 170 Query: 176 PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV--- 232 + QALLR E LA + +AR D V Sbjct: 171 DDARHSAL------RQALLRQAGYTA--------------ERLAELALRRIARPDLVIRS 210 Query: 233 -KQQWRDAVGELDALIESSGIDRRK------------FNRSNQAKWIDKISAWAEE---- 275 + D +L+ L E G RR+ FN+ K D+ A E+ Sbjct: 211 NAEAGTDPAADLEELAEGFGELRREELPECLANFPYLFNKPFSGKDFDRFIAAYEKFRAD 270 Query: 276 --ETNSY-QL-----PESL-EKFSQR----------FLEDRTKAGGETPRHPLFEAIDQL 316 T + QL PE+L E R LE R +A + I QL Sbjct: 271 GVPTGEFLQLLAAFTPEALTEALCARKKSGAPSQFAALEQRQEALAGILEQSELQRIFQL 330 Query: 317 LAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRT 376 D V+ A+ E+ R K++ FDDM+ + AL E L +++ Sbjct: 331 AELAPRFGDTVLLAAVEELLAAYDRAKQQANLQTFDDMIRDVHRAL-MEPESRLQRSLQQ 389 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIW-------HHQPETALLLIGDPKQAIYAFRGADIFT 429 ++P+ ++DEFQDTDP QY IF++I+ P L L+GDP+QAIY FRG DI T Sbjct: 390 QYPLGIVDEFQDTDPIQYAIFKKIFIDPAEPGGAVPAATLFLVGDPRQAIYGFRGGDIDT 449 Query: 430 YMKARSEVH----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ 485 Y +A +V A YTL N+RSA GM+ +VN LFS+ F I + + K + Sbjct: 450 YNRAADDVFRYGGAKYTLTRNFRSAAGMIEAVNLLFSRHASPFASERITLPEISAPAKPE 509 Query: 486 -------ALRFVFKGETQPAMKMWL--MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 AL + + +P L +G++C + A +C D L R Sbjct: 510 LGNRPESALLVAGREDRRPLRITDLPDSDGDACLAAAVEIANALLC----DDTLHIPPRS 565 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 + R +R DI++LV+ EA ++ L IPSV+ SN +SV+ + EA+E+ Sbjct: 566 DT------PERRLRPGDIAILVKKWSEAYALKPLLAARMIPSVF-SNSESVYRSDEAREL 618 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE--FDGYRQIWRK 654 L +L A+ PER + +ALAT + G ++ L ++E + ++ + F R+ WR Sbjct: 619 LTVLAAIAAPERSGEVLAALATGLGGCGLAELLRLGSEEGSNELAEHQTAFARLRREWRP 678 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQ 713 + M L+ +I GGER+L ++ + +LLQ+ ++ + S +AL+ +LS Sbjct: 679 ETFIVMFSGLLKYFDIPARFARQEGGERKLANLHQLGDLLQQESSRRKLSINALLNFLSD 738 Query: 714 HILEPDSNASSQQMR--LESDKHLVQIVTIHKSKGLEYPLVWLP----FITNFRVQEQAF 767 + E + SS +++ LESD+ V+I T+H SKGLEYP+V LP F T R F Sbjct: 739 AV-EGRIDDSSDEVKQILESDRDSVKITTVHSSKGLEYPVVILPSLFRFATGSRSPGGNF 797 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 + D H V +L+AA + E E+LRL YVALTR+ + C + K Sbjct: 798 HEDGH---LVYELHAAGSMNEREHDEATMENLRLAYVALTRAKYRCHVLWG--------K 846 Query: 828 KGDTDVHQSALGRLLQ--KGEPQDAA------GLRTCIEALCDDDIAWQTAQTGDN---- 875 G + S L L++ + P++AA +R L ++ +T Sbjct: 847 DGASSYCNSPLDWLVKFREATPEEAAHPTRFLKMRKDAPRLLPVELEEKTLPVSTQVYRP 906 Query: 876 --------QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA---------Q 918 PW+ N R+ D++R+ S+S L G Sbjct: 907 ELDRSRQLAPWEWN------------HRVLRDHYRIASFSSLSPAASGRLDPADDGADHD 954 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREK 976 D P + A + + P L P G + G +H + E+LDFT P D K Sbjct: 955 DSQPEEQLPALSETAPEKNPALA---LPGGKAFGNAVHEILEELDFTAPFDTLRELAARK 1011 Query: 977 LE----LGGFESQWEPVLTEWITAVLQ----APLNET---GVSLSQLSARNKQVEMEFYL 1025 L L G S + + + A+++ APL++ G +LSQ+ ++ E+ F Sbjct: 1012 LRFYGLLAGDGSGADRERLDAVAAMVERTRRAPLHDAQGDGFTLSQIGRADRLSELRFLF 1071 Query: 1026 PISEPLIASQLDTLI-----RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE----GRY 1076 ++ L+ R+F P G L GFIDLVFR RY Sbjct: 1072 GFGRKFRTGEIAELLGDYAEREFR--FTDWPEWNTPVDGGFLNGFIDLVFRRRTASGDRY 1129 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY---DYEH 1133 L+D+K+N L + + +T + AAM Y LQY YT+AL ++LR + DY Sbjct: 1130 SLVDWKTNRLDGEPANFTPAQLPAAMSHSYYFLQYLFYTVALVKFLRRTFGKFDAEDYRD 1189 Query: 1134 HFGGVIYLFLRGVDKEHPQQ--GIYTTRPNAGLIALMDEMFA 1173 FGGV YLFLRG+ P G++ TRP+ L+ ++ + + Sbjct: 1190 RFGGVYYLFLRGIRAGQPPNGDGVFFTRPDFELVTALEALIS 1231 >UniRef50_B0RMH9 Exodeoxyribonuclease V beta chain n=8 Tax=Xanthomonas RepID=B0RMH9_XANCB Length = 1372 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 360/1123 (32%), Positives = 541/1123 (48%), Gaps = 137/1123 (12%) Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQ-QLIEDESLLRYQACADFWRRHCYPL 175 A ++D AA+FTIHGFC R+L +A ESG F QL+ ++ L + AD WR+ Sbjct: 178 AVEEIDLAAIFTIHGFCARVLREHALESGQAFAAPQLLANDRELLGEVAADLWRQRAADA 237 Query: 176 PREIAQVVFETWK-GPQALLRDINRYLQGEA--PVIKAPPPDDETLASRHAQIVARIDTV 232 V W GP AL D+ +Q P + AP PD + A A + + Sbjct: 238 AMADDLVAL--WPAGPTALASDLRALVQQPELLPAVAAPTPDPQPARQ--AAAQAVVAAL 293 Query: 233 KQQWRDAVGELDALIESSGIDRRK-----FNRSNQAKWIDKISA-WAEEETNSYQ--LPE 284 + A + A E D R+ F+++ + W A W ++ LP+ Sbjct: 294 RAHGDAAYDAVAAAFEHKIFDGRRARRPSFDKAFEQLWQGSAEAHWVLDDGGHLDKLLPQ 353 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAI------DQLLAEPLSIRDLVITRALAE-IRE 337 L +F + DR P PLF+A+ D ++ + R + + AL + Sbjct: 354 RLREFCKDGAHDRV------PCSPLFDALAVWQQADAVVRQWEGQRRIRLLHALRDDAVL 407 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 +A+ KR+R +DD++ + AL+ E L +R ++ +A++DEFQDTD +Q++IF Sbjct: 408 QLAQRKRQRRVQTYDDLVDGVARALQGPQAEALVQRLRAQYAIALVDEFQDTDDRQWQIF 467 Query: 398 RRIWHHQ-----------------------PETALLLIGDPKQAIYAFRGADIFTYMKAR 434 R++ + P L LIGDPKQAIY FRG D+ TY+ A Sbjct: 468 SRVFGPEHAASGEAFAPDDDADFDNAAGAPPPRLLALIGDPKQAIYGFRGGDVQTYLAAA 527 Query: 435 SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD--DAFMFREIPFIPVKSAGKNQALRFVFK 492 + L+ N+RS PG++ +++ L++Q +AF+ I F PV+ K + Sbjct: 528 TTAQRAPPLEHNFRSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQPGTKRSDADLLRD 587 Query: 493 GETQPAMKMW---------LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 G PA+ +W + + G + C A IR WL G+ G A + NG Sbjct: 588 GAAAPALTLWRAPAPPPPEKGKPKPWSAGRARELCTAACVAAIRGWLAGGRDGSASI-NG 646 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RPV+A DI+VLVRS EA +++ AL + IP+V + + S+F T EA E+L LLQA+ Sbjct: 647 ---RPVQAGDIAVLVRSHGEATRIQQALGAVGIPAVA-AGKQSLFATDEALELLALLQAL 702 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRA 663 + P ++ LR+ALAT ++G +A I L +D ++ +R+ W++ G + ++ Sbjct: 703 LDPGDDSRLRAALATVLIGEDAAAIAALEHDGERHRRWQQQALDWRERWQRGGPLALVGD 762 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 L + + LLA GERRLT+ L ++ELLQEA T+ H LV WL++ I D N Sbjct: 763 LGATHG--QRLLALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRIANADDNDE 820 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE--------QAFYHDR---- 771 +QQ+RLESD VQIVT+HKSKGLEYPLV+LP+I R + A H R Sbjct: 821 TQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCVVHAPPHGRQLHW 880 Query: 772 HSFEAVLDLNAAPESVDLA-EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 ++ + D A+ + + A + E+ AED RLLYV LTR+ +L +A G Sbjct: 881 NTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGLTRA--EHALWIA---------TGA 929 Query: 831 TDVHQ-SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN 889 H+ +AL +L +D A L+ A IA P D + Sbjct: 930 FHQHERTALAPML-----RDPAALQASAGAGV---IALDDTAPPATLPRLPADDAVQVPA 981 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS--VVEEPTLTPHQF-- 945 A+ QR +W V S++ L G D M + ++G + EP P + Sbjct: 982 ARLAQRHVVPDWWVYSFTQLANADAG--SDPMASATLASSGGSDEPPASEPVSAPAEVEA 1039 Query: 946 --PR--GASPGTFLHSLFEDLDFT--------QPVDPNW---VREKLELGGFESQWE--- 987 PR G G +H +FE DF QP + E L+ GG+ +Q E Sbjct: 1040 FDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQPAPEGQAAAILEALQRGGY-AQDELDD 1098 Query: 988 --PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP 1045 +LT + L L E G L+ + ++ EMEF+ + P L L+ +F Sbjct: 1099 GLAMLTRLVGHTLTVTLPE-GTCLAAVPEPQRRNEMEFHFAM-RPTRVDALLALLHRFGV 1156 Query: 1046 LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 ++ ++ G++ G IDL + +GR+Y+LDYKSN L AY A+A AM Sbjct: 1157 VTERQAFGARQRLEGLMTGLIDLTYCADGRWYVLDYKSNRL----PAYDPDALARAMAHS 1212 Query: 1106 RYDLQYQLYTLALHRYLRHRI-ADYDYEHHFGGVIYLFLRGVD 1147 Y+LQ +YT+ALHR+LR R+ A YDY FGGV YLF RG+D Sbjct: 1213 EYELQALIYTIALHRWLRFRLGASYDYARDFGGVRYLFCRGLD 1255 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 8/69 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS+ T L LPL G RLIEASAGTGKTFT+A L+ RL++ R L + ++L Sbjct: 1 MSNSPVTDPYLHLPLHGVRLIEASAGTGKTFTLATLFTRLVV--------ERQLRIGQIL 52 Query: 61 VVTFTEAAT 69 VTFTEAAT Sbjct: 53 AVTFTEAAT 61 >UniRef50_B5JHV0 UvrD/REP helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHV0_9BACT Length = 1170 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 368/1228 (29%), Positives = 575/1228 (46%), Gaps = 130/1228 (10%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G LIEASAGTGKT+ + + L+L L G +T++ +L VTFTEAAT EL R Sbjct: 6 KGTTLIEASAGTGKTYRLCRIALQLTLQHG--------ITLDRILAVTFTEAATEELASR 57 Query: 76 IRSNIHELRIACLRE-TTDNPLYERLLEEID----DKAQAAQWLLLAERQMDEAAVFTIH 130 I+ +L CLRE T +P + LLE + D +A L + DEA + TIH Sbjct: 58 IQ----KLYQGCLRELETGDPKEDVLLECLKSEDFDVERAKNALRYSLEVFDEAPISTIH 113 Query: 131 GFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGP 190 FC+R L L A E+ + +L + E L Q ++ R+H ++ + +E K Sbjct: 114 SFCKRCLELVALETQNPLDAELSQIEDDLIVQLQGEYIRQHILEASSALS-LAYEAQKDF 172 Query: 191 QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESS 250 + L++I+R P P ID++++++R+ L L++ S Sbjct: 173 EKRLKEISRQTSSHPDASLRPIP-----------TPISIDSLERRFRELPEALSNLVDRS 221 Query: 251 GIDRRKFNRSNQ-AKWID-KISAWAEEETNSYQLPESL----EKFSQRFLEDRTKAGGET 304 + ++ + AK + K + LP L + S+ + + K+G + Sbjct: 222 EEYLKHLGKARKPAKQLSGKSPGLLACVKRGFLLPADLGWLGDFSSEAWSKAMNKSGQDL 281 Query: 305 PRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 P P+ ID +L + S +I + + R K++ + F+D+L L AL Sbjct: 282 PLPPVTALIDVVLDQIESAYLSLIYNYRPWLSGRLERAKQQANVISFNDLLHHLQRALTG 341 Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRG 424 E G + + R+ A+IDEFQDTD Q +I R ++ H E L IGDPKQAIY FRG Sbjct: 342 EEGTRIIEFLAGRYDAALIDEFQDTDRTQLKIARSLFGHG-EHYLFYIGDPKQAIYRFRG 400 Query: 425 ADIFTYMKA-RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 ADI+ Y +A + E + LD N+RSAP +V +VN LF + F+ I F V+S G Sbjct: 401 ADIYAYFQATQGEGLRNEILDKNYRSAPKLVEAVNALFESSRAGFVDERISFRSVES-GL 459 Query: 484 NQALRFVFKGETQPAMKMWLMEGESCGV----GDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 + A F E QP ++ + E+ +Y++ +A+ A L Sbjct: 460 DAA---DFSSE-QPPFRIVQLRLENPSYPKSKSEYRNILAERAANDFAKRL--------- 506 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 +++ ++A D+S LV R EAA + +AL I + ++R SVF+T EA ++ L Sbjct: 507 ----NESPELKAEDVSFLVNDRIEAAALSEALLQRGISAAIHADR-SVFKTQEAIDLKQL 561 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 L A+++P R + R A A L+A+ + + + E+ V E + + W R Sbjct: 562 LAALVSPARTSLKRGACAALDHSLSAVSMRS-ESFENRVAPVFEYITEWARDWHTRNFDV 620 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEP 718 L L+ N E+ ERR +I + ELL EA E S L WL + Sbjct: 621 ALHGLLRLLNSEESPSGGLDTERRHANICQLGELLSEARDAEELSPRGLYNWLCRKTEAN 680 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT--NFRVQEQAFYHDRHSFEA 776 S+ Q R+ SD+ QI+T+HKSKGL++P V LPF+ R++E A + E Sbjct: 681 VSHNEEWQTRISSDERKPQILTVHKSKGLQFPYVILPFLGLRRVRLKELASAYHGPEDEL 740 Query: 777 VLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSLGVAPL-VRRRGD------- 826 ++D +P+S A R LAED+RLLYVALTR+ + + P + R GD Sbjct: 741 IIDYAPSPDSPASQHARREALAEDIRLLYVALTRAEHENLVYLCPEELSRTGDLACSSFA 800 Query: 827 -------KKGDTDVHQSAL--------GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 ++ +D + L G L + P D++G C EA D +TA Sbjct: 801 QFLLDEGERTSSDAVAAQLHSLAEGSNGSLAFEQSPLDSSGFVQC-EA---TDSHAETAA 856 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH-GIAQDLMPRLDVDAAG 930 +N N + R+P RV S+S L + H ++ + L+ + + Sbjct: 857 ASEN-------------NLQNRARMPFVE-RVLSFSALNKGMHRDEDENSIELLEQEESA 902 Query: 931 VASVVEEPT------------LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN-WVREKL 977 + EP L+ P+G G LH + E DF++P + ++ Sbjct: 903 SDELNIEPEAELEQTEAQPLELSIFTLPKGTHAGDLLHLILERFDFSRPETLSATTQQAF 962 Query: 978 ELGGFESQ-WEPVLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 + FE + +EP++ I+++ +A L T +L Q+S + E+EF P+S + ++ Sbjct: 963 DALQFEPRDFEPIVAAQISSIAKANLKSQFTEFTLEQISPDRRIPELEFSYPVSGDVKSN 1022 Query: 1035 QLDTLIRQ---FDPLS--AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 L L R F P G E ML+GFIDLV H+ R Y+ D+KSN+LG Sbjct: 1023 ILSALSRSDLGFIPTDWLEGLSHSEAGLPASMLRGFIDLVLEHDNRLYIFDWKSNYLGPT 1082 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 + Y Q A+ +M H Y LQY LY +AL RY R +E FGGV Y+++RG+ Sbjct: 1083 PADYDQAAILESMGEHNYFLQYLLYCVALKRYAEWRFPGKPFEESFGGVFYIYVRGISP- 1141 Query: 1150 HPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 + GI+ P+ L+ +DE G L Sbjct: 1142 GKETGIFYDLPSPELLQALDEALYGGVL 1169 >UniRef50_UPI0000E0F57F exodeoxyribonuclease V, beta subunit n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F57F Length = 1222 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 364/1260 (28%), Positives = 574/1260 (45%), Gaps = 178/1260 (14%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V L+ + L L LIEASAGTGKTF I + +++LL + +++ +LL+VT Sbjct: 7 VFSPLNVITLTLAQRHLIEASAGTGKTFNITRIAVKVLL--------VKQISITQLLIVT 58 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTD--NPLYERLLEEIDDKAQAAQWLLLAERQ- 120 FT+AAT EL+ RI + + E + L + + +PL L+ ID+ L RQ Sbjct: 59 FTKAATQELKARIAATLQEF-LTMLDQPQEQWDPLLRDLI--IDNAVVTPDKARLILRQA 115 Query: 121 ---MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACAD---------FW 168 MDEAA+FTI+ FC RML ++F + FEQ +I+D + A D + Sbjct: 116 ILEMDEAAIFTINSFCGRMLTQSSFLTHRPFEQTIIDDSQSIYITAIHDQFLALQNKVAY 175 Query: 169 RRHCYPLPREIAQVVFETWKG------PQALLRDIN----------------RYLQGEAP 206 R E + F T+ P + N + L+ E Sbjct: 176 REALSAFGVETPEDFFATYHNVLLNNLPVEYPNETNIDELIQQSFQPIFSSLKVLRSECC 235 Query: 207 VIKAPPPDD-ETL-ASRHAQIVARIDTVKQQWRDAVGELD--ALIES--SGIDRR----K 256 +I + ++ +TL + +A++ +D V + W DA D ++S GI R Sbjct: 236 LILSQYINEIKTLYETNYAKVSMDVDIVLR-WLDADVYFDDEGFVKSFFHGIRIRGYAKH 294 Query: 257 FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQL 316 F+ +N+A ++ + A+ E + EK ++ E + K P + L Sbjct: 295 FDTANKAHYLTVLQAFNESWKQA-------EKIKKKIAEVQHK----LPHYSL------- 336 Query: 317 LAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRT 376 I L +I+ + +K+R+G L D + L + S E L A IR Sbjct: 337 -----------IATLLNDIKTQASNDKQRQGVLDHSDTIHLLYQEIMS-GNEQLIAYIRQ 384 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARS 435 ++P+A+IDEFQDTD +QY IF +++ E LL+IGDPKQAIY FRG D+FTY+ A Sbjct: 385 QYPIALIDEFQDTDAEQYSIFHQVYPPKNKELMLLMIGDPKQAIYGFRGGDVFTYLNAVK 444 Query: 436 EVHAHYTLDTNWRSAPGMVNSVNKLF-----------SQTDDAFMFREIPF----IPVK- 479 + H+++DTN+RS P ++N N LF S T A + P +P K Sbjct: 445 DACFHWSMDTNYRSTPSVINGYNTLFYGLDITQSKLSSMTSWATSLSDAPNTEPPVPEKE 504 Query: 480 ------------SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI- 526 + +A K E A + G + Q M +AQI Sbjct: 505 LFDYHIQYNWILATSLAKANNTPLKDECSDAGTHFFHYQMQEG-NELQPAMLDKISAQIL 563 Query: 527 -RDWL-QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 W+ QR + GD R V+ +DI++LV R + ++ + SV LSNR Sbjct: 564 MSKWVANEIQRLLTSVTLGD--RLVQPADIAILVNKRAQGDLIKRVFAQCGLNSVILSNR 621 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 +S+F + +A + L ++ +E ++ LAT +MG D+ L D D+ + Sbjct: 622 NSIFTSQQATNLYRFLHGLLNFNQERPFKTMLATDLMGCQPEDLYAL--DSRPDDIEQYK 679 Query: 645 FDGYRQI--WRKRGVMPMLRALMSAR-NIAENLLATAGGERRLTDILHISELLQEAGTQL 701 ++ + W+ G++ ML ++ R + + L ER +T+ + +++LL E Sbjct: 680 LAAHQLLHKWQDEGILVMLTHVLKTRFTLYGDCL---DAERIMTNYMQLADLLNE----F 732 Query: 702 ESEHALVRWLSQHILEP---DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF-- 756 E + L + + E + A RLESD L++IVTIH SKGLEYP+V++PF Sbjct: 733 ERTNPLPSMTASFLYEKLAAGNEADEYYQRLESDSELIKIVTIHGSKGLEYPIVFVPFDS 792 Query: 757 -----ITNFRVQEQAFY----HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALT 807 + N + + FY ++ F A L + +++ + +A+R E LRLLYVA+T Sbjct: 793 FGNRDLINSKAKFTTFYDTNAQEKRHFLARLPVK---DAIQIEQAQR--EALRLLYVAIT 847 Query: 808 RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAW 867 R+ C LG + D +A+ +L K + +EAL D + Sbjct: 848 RAAHRCYLGYQSI--HYADN--------TAIHHMLAKVADTHDYSVIEYMEALAGADSSL 897 Query: 868 QTAQT-GDNQPWQVND--VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 924 + T DN + + +L A T WR+ SYS + R I + Sbjct: 898 FASHTIPDNLHLSMYSKLSNQPDLKALTYTGPTQSQWRIYSYSSIVNRTKEIDLNAKTHS 957 Query: 925 DVDAAGVASVVEEPTLTPHQFP--RGASPGTFLHSLFEDLDFTQPVDPNWV-REKLELGG 981 D A S ++ P +F +GA+ G LH++ E DFT+ +D + +E L+ Sbjct: 958 DDHAKSDRSSDKQDDTLPLRFTLTKGANAGQLLHNVLEHSDFTEALDNTLIEQECLKFLP 1017 Query: 982 FESQWEPVLTEWITAVLQAPL----NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 + W+ VL P+ +++ L QL N E +FY P+ + IAS Sbjct: 1018 DHQNDIDAIASWLDEVLSTPIYHAHSDSNFMLKQLPKANTLREPQFYFPLGDTSIASLGK 1077 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 L D P L + GM++GFIDL+F G+Y++ DYKS LG YT A Sbjct: 1078 LLQHHRD--ENTLPNLATDMLEGMMQGFIDLIFEVNGQYFVCDYKSTHLGNGFEGYTPDA 1135 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP-QQGIY 1156 + A +Q+ +YDLQY +Y LH +L + DY+ H GGV YL+LRG+ + P GIY Sbjct: 1136 LLADIQSKQYDLQYLIYVWVLHLHLSLVLPDYEPSRHLGGVYYLYLRGMSPQAPAHSGIY 1195 >UniRef50_C1ACJ1 Exodeoxyribonuclease V beta subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ1_GEMAT Length = 1210 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 299/902 (33%), Positives = 431/902 (47%), Gaps = 104/902 (11%) Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTD 390 L ++ + V KR R +GFDD+L +L + L ++ E +LA AIR +F A+IDEFQDTD Sbjct: 336 LQDVDDRVRTLKRERSLMGFDDLLGQLHAVLAAQGSEGLLARAIRQQFQAALIDEFQDTD 395 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA 450 Q+ +FR + QP L LIGDPKQAIYAFRGAD+ Y++A + Y+L+ N+RS Sbjct: 396 SHQFHVFRIAFAGQP---LFLIGDPKQAIYAFRGADVRAYLEAARQASHRYSLEFNFRST 452 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPV---------KSAGKNQALRFVF------KGET 495 P MV +VN LFS++ F+ EI F P K + L ++F G + Sbjct: 453 PPMVQAVNALFSRSTAPFVEPEIAFHPATARNFDPNPKGVAGSHGLHWLFVPPDTRNGNS 512 Query: 496 QPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 P +G ++ + + CA++I +++ + V I+ Sbjct: 513 VP-----------TPIGQARTLLFRACASRIASYIK---------------QEVPPGRIA 546 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 VLVR E ++ L + SV +S V ++LE E+ +L+A+ P + +R+A Sbjct: 547 VLVRKGFEGVEMVQVLAEAGVRSV-VSGLGDVMQSLEMAELQRVLEAIAVPRDPSRVRAA 605 Query: 616 LATSMMGLNALDIETLNN--DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 LAT++ G D+ L + E W+ ++ E R++W +G + +L L +R + Sbjct: 606 LATTLWGATHEDLVRLASPEGEREWEEILTEVASLRELWATQGTLQLLERLFESRAVVSR 665 Query: 674 LLATAGGERRLTDILHISELLQEAGTQ-LESEHALVRWLSQHILEPDSNASSQQMRLESD 732 L G+RRLT++ H ELL A Q S +RWL EP +++RLESD Sbjct: 666 YLTYTDGDRRLTNLRHAQELLHGAAEQDALSIEGTLRWLDAARREPAETRGVRELRLESD 725 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAP---ESVDL 789 VQIVT+H+SKGLEY LV+ P + R E H V+ + +P E Sbjct: 726 DDAVQIVTVHRSKGLEYDLVFCPTLWGVRRVEPDAPVLVHEQGRVVYDHGSPRLAERTAQ 785 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ- 848 AE ERLAED RL+YVALTR+ + + P+ G+ ++ QSAL LL G Sbjct: 786 AERERLAEDCRLVYVALTRARFRTYVAWGPI----GNAPNGSE--QSALSWLLFDGAAAP 839 Query: 849 DAAGLRTCIEALCDDDIAWQTAQTG--DNQP----------WQVNDVSTAEL-------N 889 D G + L AWQ D P WQ A + Sbjct: 840 DRDGPAAVADQLRAAPDAWQGMLRSLVDAHPSLMALDMVDTWQPIAPVAAAPQAPPLTGH 899 Query: 890 AKTLQRLPGDNWRVTSYS--GLQQRGHGIAQDLMPRL------DVDAAGVASVVEEPTLT 941 A+ L +P R +++S G+ + L + D DA A+ V T Sbjct: 900 ARQLPSVPSLRERFSTFSIASFTSLTAGVYESLRAEMSEQVARDRDAQPDATPVTTVTND 959 Query: 942 PHQF---PRGASPGTFLHSLFEDLDF-TQPVDPNWV--REKLELGGFESQWE---PVLTE 992 PH F P GA PGT LH++FE F P + RE L LG E + E Sbjct: 960 PHDFRTFPAGAVPGTVLHAIFEHAHFDGSPAAWQEIADRELLVLGFDEDEHELRTASTVR 1019 Query: 993 WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEP---LIASQLDTLIRQFDPLSAG 1049 + +LQAPL G +L+ + A + E +F LP++ + L + Q Sbjct: 1020 MMQRLLQAPLPGLGFALAAVPASRTRREWQFLLPLASADHVMTRQALAAVFAQHGGAHGA 1079 Query: 1050 CPP-----LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 L F ++ G L GF+DL+F HEGR+Y++D+KSN LG D+ AY A+ M Sbjct: 1080 AYADQLRRLSFNRLHGYLTGFVDLLFEHEGRWYVVDWKSNQLGADNGAYKSSALQTVMDD 1139 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG-VDKEHPQQGIYTTRPNAG 1163 H Y LQY LY +A HR+L R+ DYDY+ H GG Y FLRG D G + RP A Sbjct: 1140 HHYTLQYHLYLVAAHRFLAQRVPDYDYDTHIGGAAYAFLRGFADASVDGTGWFVHRPPAA 1199 Query: 1164 LI 1165 LI Sbjct: 1200 LI 1201 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 109/213 (51%), Gaps = 32/213 (15%) Query: 1 MSDVAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLL-----------GLGGSA 48 MS A D R P G LIEASAGTGKTF IA +RLLL GLGG Sbjct: 1 MSRAAGPFDVARSPFPPGISLIEASAGTGKTFNIAMSVVRLLLEQDAAGQPIVSGLGG-- 58 Query: 49 AFPRPLTVEELLVVTFTEAATAELRGRIRSNI---HELRIACLRETTDNPLYERLLEEID 105 +LVVTFT AAT EL R+R + HE+ L +++ + +L E+ Sbjct: 59 ----------ILVVTFTNAATEELVTRVRRMLQLAHEVWSGALYAKSNSEI--EILRELA 106 Query: 106 DKAQ--AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQA 163 + + AA A R +D AVFTIHGFC+R+L+ A ESG F +L++D + L +A Sbjct: 107 NGREPWAATRAQEALRALDALAVFTIHGFCKRVLDEFALESGAPFSMELLDDPTPLIEEA 166 Query: 164 CADFWRRHCYPLPREIAQVVFETWKGPQALLRD 196 D+WRR Y P A V W P + ++D Sbjct: 167 MFDWWRRTFYIDPALAAWAVHRQWS-PLSFVQD 198 >UniRef50_C6HV35 UvrD/REP helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV35_9BACT Length = 1166 Score = 335 bits (858), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 376/1220 (30%), Positives = 546/1220 (44%), Gaps = 161/1220 (13%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS++ + LR +G LIEASAGTGKTF + LYL AA + VE++L Sbjct: 1 MSEIRPFIPVLR---RGVTLIEASAGTGKTFALTQLYL---------AAVLSGVPVEQIL 48 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELRGR+R+ + R L P E L D + + L A Sbjct: 49 VVTFTEAATDELRGRLRTLLSHARSHALGVA---PPPEILPLVADVRPEHLTLLSRALFD 105 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY-PLPREI 179 D A V TIH FC+R+L AFE F +L + + + + WRR Y PR + Sbjct: 106 FDRAPVATIHSFCRRVLREYAFEFDAPFSLELESSDRAFKKASVREVWRRLVYREDPRIV 165 Query: 180 AQVVFETWKGPQALLR-----DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 Q+ KGP LL ++R L+ + P I PPP+ A R A + AR Sbjct: 166 WQISGLFPKGPDDLLSILPPGGLSRPLR-DNPGI--PPPE----APRQAFLTAR-----H 213 Query: 235 QWRDAVGELDA------LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP----E 284 +W A G L L G + ++ K + ++A E + LP Sbjct: 214 RWISAAGTLGEGEAERWLNSFPGSGKNGRVLADDRKKRETMAARIVELGTPHPLPPAGFS 273 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR---ETVAR 341 SL+ FL+ + + + + L ++ + R E+ +VA Sbjct: 274 SLDDELVEFLKTSSPGAAQPSALAALAGLREYLESARTLSSSLRERFRREVHREFSSVAL 333 Query: 342 EKR-RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 +KR +G FDDM+ R+ + L GE LA +R RFPVA +DEFQDTD Q+ IF RI Sbjct: 334 KKREHQGVETFDDMIGRVVAGLMGPRGEELARLLRKRFPVAFVDEFQDTDYAQFAIFGRI 393 Query: 401 WH-----HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTLDTNWRSA 450 + ET+L+L+GDPKQ+IY FRGAD+ Y++AR V +L N+RS Sbjct: 394 YELVSKDSDGETSLVLVGDPKQSIYRFRGADLDAYVEAREAVLKKDAEGLCSLGVNYRSD 453 Query: 451 PGMVNSVNKLFSQTDDAFMFRE-IPFIPV--KSAGKNQALRFVFKGETQPAMKMWL-MEG 506 V +VN LFS+ D F+ E I + PV K G + L E P + + EG Sbjct: 454 ALHVEAVNTLFSRHPDPFISGERIVYHPVTPKKTGPSGFLDPAESDEGLPPVLFAIDPEG 513 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD---DARPVRASDISVLVRSRQE 563 E+ D+ DW R L++G + +P+R DI +LVR+ Sbjct: 514 EAFSNKDFV------------DW---AAREILRLLSGPALREGKPLRPDDICLLVRTNSH 558 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A + +AL L IP+V + +V A ++ LL A+ P +R L++ + + Sbjct: 559 ATMMLEALESLGIPAVSYAG-GNVLRGEMAFDLEMLLLALKDPGDRRQMRLVLSSPLFEV 617 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 A ++ ++ +D W+ V+ F W + G M LR L + +L G Sbjct: 618 PARELLSMEDDPELWNARVDPFFRTAADWFRLGAMGALRRLCLETRVFSRILGGGAGRSG 677 Query: 684 ---LTDILHISELLQEAGTQLESEHALV-RWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 LTD+LH+ E+++ + LV R+L + RL++ V+I+ Sbjct: 678 RRRLTDLLHLIEIVESLDRDRPTLALLVDRYLEARRESEKKGDDATAPRLDTLDGRVRIL 737 Query: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED- 798 TIH++KGLE+PLV LP + DL+ A E E E Sbjct: 738 TIHRAKGLEFPLVILPLGLSGG-----------------DLSPAEEEEGEGEGEESETPE 780 Query: 799 --LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL--------QKGEPQ 848 +RLLYVALTR+V H ++ + P V QS+L RLL ++GE Sbjct: 781 EMMRLLYVALTRAV-HRTVVMLPC----------RYVSQSSLARLLSGGSSSGGKRGE-- 827 Query: 849 DAAGLRTCIEALCDDDIA-WQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWR-VTSY 906 + R I L + A + A D Q ++ S L P V S+ Sbjct: 828 AVSFFRKEIARLVAEYPALFGEALPPDRQREGLSPESLPALLPPRRLPRPLPAPLRVESF 887 Query: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 S L + G P L D E P P P G GT H FE L + Sbjct: 888 SSLARGGREGRTLFSPALRGDDD---LPWERPAGDPE--PGGPLFGTVFHRTFEILLSSA 942 Query: 967 P--------------VDPNWVREKLELGG----FESQWEPVLTEWITA-VLQAPLNETG- 1006 P +D +LGG F P+ ++A + P G Sbjct: 943 PPGEARDPFRELPEALDRAMAESSSDLGGQAEAFREALFPLCARTLSAGLFPDPAVPGGW 1002 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFI 1066 + +++++ + VE EF LP S+ D +R + L PL F VRGM++GF+ Sbjct: 1003 FAFARIASLPRSVEREFLLPAGG---LSERD--LRPY--LFPEGAPLSFDPVRGMIRGFV 1055 Query: 1067 DLVFRHEGRYYLLDYKSNWL-GE-DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 DL+FR + YLLDYK+N L GE +++AY + ++ AM HRYD Q LY+LALHR L Sbjct: 1056 DLLFRQGEKTYLLDYKTNRLPGESEAAAYGPEGLSRAMAQHRYDFQGLLYSLALHRLLAF 1115 Query: 1125 RIADYDYEHHFGGVIYLFLR 1144 DYDY+ HFGG ++LF+R Sbjct: 1116 SRPDYDYDRHFGGALFLFVR 1135 >UniRef50_C0ZQ88 Exodeoxyribonuclease V beta chain n=6 Tax=Corynebacterineae RepID=C0ZQ88_RHOE4 Length = 1105 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 322/1013 (31%), Positives = 464/1013 (45%), Gaps = 160/1013 (15%) Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE-----------------PLSIRD-L 326 + F QR L+ AG P E++D L++E P S +D L Sbjct: 120 TTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDAL 179 Query: 327 VITRAL-------------------------AEIRETVAREKRRRGELGFDDMLSRLDSA 361 I R A R V R KR +G F+D+L+ L Sbjct: 180 AIARIAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFNDLLTLLHGV 239 Query: 362 LRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 L E G V +R +F V +IDEFQDTDP Q+ I R +H T L+L+GDPKQAIY Sbjct: 240 LTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGH--TTLVLVGDPKQAIY 297 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 AFRGA++ +Y+ A + AH L TNWRS PG++ ++ L+ A I PV++ Sbjct: 298 AFRGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGA--ALGNEGIVAHPVEA 355 Query: 481 AGKNQAL--------RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQA 532 + K L R + + P L VG +S +A AA + L + Sbjct: 356 SHKKSRLSGPVPMRVRHLPRTGAGP-----LNRSGFPAVGRLRSRVADDVAADVVGLLGS 410 Query: 533 GQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 R L ++G D RPV D++VLVR+ ++ A +RDAL + +PSV L+ SVF T Sbjct: 411 DAR---LAVDG-DPRPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSV-LTGGSSVFATPS 465 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDG----Y 648 A + LWLLQA+ P R + +R + + G A E L+ D D VV E G Y Sbjct: 466 ATQWLWLLQAIEQPHRSDRVRLTALSPIFGRTA---EELDVD---GDNVVAELAGQLRSY 519 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHAL 707 ++ + G + + + N+ + +LA GER TD+ H+++LL T+ AL Sbjct: 520 SGLFARVGFAAVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSAL 579 Query: 708 VRWLSQHILEPDS-NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF----ITNFRV 762 VRWLS I +P S +A+ + RL+SD VQI T+H +KGLE+P+V++PF + F Sbjct: 580 VRWLSDRIKDPTSGSATDRSRRLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNS 639 Query: 763 QEQAFYHDRHSFEAVLDLNA-------APESVDLAEAERLAEDLRLLYVALTRSVWHCSL 815 Q HD +LD+ A ++V AEAE E+LRLLYVALTR+ L Sbjct: 640 PTQ-LLHDPDG-RRILDVGGQEGPGHNARKTV--AEAEEAGEELRLLYVALTRAQCQLVL 695 Query: 816 GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP----------QDAAGLRTCIEALCDDDI 865 AP G + + +H+ LGR EP AA L T A D Sbjct: 696 WWAP---SYGTSR--SPLHRLMLGRTPGIAEPARVVKVLDDGTTAARLATWPAAASD--- 747 Query: 866 AWQTAQTGDNQP----WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA---- 917 G + P W + EL A R WR TSYS L H Sbjct: 748 VISVEPVGPHPPSPVQWSGAAANVTELAAARFDRDLDTLWRRTSYSALTAGAHHAVTSTD 807 Query: 918 -------QDLMPRLDVDAAGVASVVEEPTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVD 969 +D P VD V E +P + P GA+ GT +H + E +D T D Sbjct: 808 SEVEDPEKDDEPEDSVDFGTVTPSPLEALPSPMNGLPAGAAFGTLVHEVLEVVD-TAASD 866 Query: 970 PNW-----VREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 E + + E E L + + V+Q PL +L+ ++ +++ E++F Sbjct: 867 LRAELGIRCAEAVSVRAAEVDSE-ALADALLLVMQTPLGFG--TLATIAPKDRLPELDFE 923 Query: 1025 LPIS---EPLIASQLDTLIRQFDPLSAGCPP-------------LEFMQVRGMLKGFIDL 1068 LP++ +P+ S TL + L PP +E +RG L G ID Sbjct: 924 LPLAGGDDPVSMSV--TLRGVSELLRRHLPPDDILASYADHLDRVETSPMRGFLTGSIDA 981 Query: 1069 VFRHEG-RYYLLDYKSNWLGED---SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 V R G + ++DYK+N LG ++ YT++ MA M Y LQ LY++ALHRYLR Sbjct: 982 VLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMMRSHYPLQALLYSVALHRYLRW 1041 Query: 1125 RIADYDYEHHFGGVIYLFLRGV--DKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 R+ DYD H GG Y F+RG+ P+ G++ +P A L + ++ AG+ Sbjct: 1042 RLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPPAQLTVELSDLLAGL 1094 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 15/128 (11%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLL-GLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 G ++EASAGTGKT+ I L R + GL + ++L+VTF+ AAT ELR R Sbjct: 12 GTTVLEASAGTGKTYAIVGLATRCVAEGLA---------DISQVLLVTFSRAATQELRER 62 Query: 76 IRSNIHELRIACL-----RETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIH 130 R + A + R + D+ + + ++ + LL A + D + T H Sbjct: 63 ARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITTTH 122 Query: 131 GFCQRMLN 138 FCQRML+ Sbjct: 123 SFCQRMLD 130 >UniRef50_A3YYL1 UvrD/REP helicase-like protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YYL1_9SYNE Length = 1285 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 370/1295 (28%), Positives = 550/1295 (42%), Gaps = 224/1295 (17%) Query: 13 LPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 LPL G LIEASAGTGKTFT+A L LRL+ R L++ LLVVTFT+AA AE Sbjct: 12 LPLDPGVHLIEASAGTGKTFTLAHLVLRLV--------GERQLSLRALLVVTFTKAAAAE 63 Query: 72 LRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA------ 125 LR RI + L +T D +E L +E+ + WL Q E Sbjct: 64 LRDRI--GRRLQQAQQLLQTPDPAGHEGLDQELKE------WLGNIPPQNYERLRAQLLL 115 Query: 126 ---------VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 + TIHGFC R L A E+G+ E +L D +LL+ Q D+W++ PLP Sbjct: 116 ALEELDAADITTIHGFCHRSLQRQALEAGLAPEVELDNDGALLQEQVVHDYWQQQVLPLP 175 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAP--PP--DDETLASRH--AQIVARID 230 + + QAL + + L+G+ P + +P PP D E AQ A Sbjct: 176 AHALRGLISKGVQIQAL-QSLLATLEGD-PTLASPELPPRWDPERPLPDQWLAQWKADWQ 233 Query: 231 TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDK--------ISAWAEEETNSYQL 282 + W L+ + ++ +R++ ++ + K +SAW + + Sbjct: 234 RFQALWEQQGEALEQALCAAAAERKQAGLKSKGPYSAKPRHKRAQLLSAWLQHQPCPGSY 293 Query: 283 PESLEKFSQRFLEDRTKAG----------GETPRHP---LFEAIDQLLAEPLSIRDLVIT 329 E LE+ + ++ D G G P+ P L EA L+ P + V+ Sbjct: 294 TELLEEKTS-WIPDYFHPGPISQAAAALEGPRPKLPQPRLLEAAAALVDGPA---EAVLG 349 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 R +AR ++R G + + D+L LD L A+ R+ A+IDEFQDT Sbjct: 350 HFCHWARAELARRRQRGGRMSYGDLLVGLDPGGDGSQRPGLIEALSQRYGAALIDEFQDT 409 Query: 390 DPQQYRIFRRIWHH---QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTN 446 DP Q+RI R + QP L+L+GDPKQAIY FRG D+ TY A S + L N Sbjct: 410 DPLQWRILHRAFAAAAAQPRHLLVLVGDPKQAIYRFRGGDLDTYRTASSTAATSHRLARN 469 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS+P ++ ++N+L + ++P P+++A + P +WL Sbjct: 470 FRSSPPLLEALNRLMA---PGLPRSQLPVPPLQAARPEGGEPLILPAGQHPLQLLWLGSD 526 Query: 507 ESCG-----VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 + G+ ++ + AA + D L G R + G+ +RP++ SD+ +LV Sbjct: 527 RAAAEALPSRGELENRVGDRVAALVLDLLLRGWR----MGEGEGSRPLQPSDLCLLVDRH 582 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 Q+A +R+AL +PS LS D VF A + LL A+ P LR A+ ++ Sbjct: 583 QQAEDLREALERRGLPSRLLSQGD-VFAGEGAALLQRLLDALAEPGSGPRLRLLAASPLL 641 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 G + + + E WD + + + G++ L L+ + +A L+ G Sbjct: 642 GWSPQQLAAAGSQE--WDRLSGQLARLAERLPDDGLLATLGRLLRSEELAR--LSLQG-- 695 Query: 682 RRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNAS-SQQMRLESDKHLVQIV 739 R L D+ +EL+QE Q A WL + L P A +QQ ++ V +V Sbjct: 696 RWLADLQQCAELVQERLHQQRLGAAASADWLRRRRLHPPETAPENQQPHSDAVASAVGVV 755 Query: 740 TIHKSKGLEYPLVWLPFI------TNFRVQEQAFYH------DRHSFEAVLDLNAAPESV 787 T+H+SKGLE+P+V P+ TN R + LD P Sbjct: 756 TVHRSKGLEFPVVICPYFWQGVGSTNRRGGRGIGRRWTPPQASGPQLDVHLDQRWGPGQE 815 Query: 788 DLAEAERL--AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK----------------- 828 + + AE RL YVALTR+ LG P R +G Sbjct: 816 AAEQEQAALTAERERLAYVALTRARELLVLGFGP-ARGQGSNPLIPWLFSDQPLPALEAD 874 Query: 829 -----GDTD----------VHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 873 G +D + + AL L G+P+ A R WQ Sbjct: 875 DDIDAGRSDQEWLEHLEGEIERRALPITLISGDPEQPAARR------------WQV---- 918 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP----------- 922 P + D+ T + +L W +SYS Q HG + L P Sbjct: 919 ---PAEAGDLRTGPVPRWSLL----SGWGRSSYSSWTQGAHG--EPLAPEAIEEGRETDG 969 Query: 923 --RLDVDAAGVASVVEEPTLTPHQ--------------FPRGASPGTFLHSLFEDLDFTQ 966 R DA G +P ++P Q FPRGA+ G LH + E +D Q Sbjct: 970 FDRTASDADGPGPQATDP-VSPKQGPETWGGRNGPLAMFPRGAAAGDCLHRILERVDHRQ 1028 Query: 967 PVDPNWVRE----KLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVE 1020 P D RE +LE G + + P +++ + P+ V L+QL R + E Sbjct: 1029 PGDDPLHRELVERELERAGLDLEHAPATLQFLEQLRHTPMGGALGEVCLAQLDPRRQLRE 1088 Query: 1021 MEFYLPISEPLIASQLDTLI----------RQFDPLSAGCPPLEFMQV----RGMLKGFI 1066 M F LP++ AS L+ R + +G P ++ RG L G I Sbjct: 1089 MPFDLPLALGADASAGRALVRAQGLAEVFSRHPEGSVSGTYPQRLAELNVASRGFLTGSI 1148 Query: 1067 DLVFRHEG-----RYYLLDYKSNWLGEDSSA----------YTQQAMAAAMQAHRYDLQY 1111 DLVF G R+++ D+KSNWLG+ Y + MAA M++H Y LQ Sbjct: 1149 DLVFTAPGGDGQERWWVADWKSNWLGQRDPQGQPVACGPLDYGRDEMAAVMESHHYPLQA 1208 Query: 1112 QLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 LY +ALHRYL R+ Y+ + GG +Y+FLRGV Sbjct: 1209 HLYLVALHRYLGWRLPGYNPQRDLGGSVYIFLRGV 1243 >UniRef50_Q05XZ6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ6_9SYNE Length = 1222 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 354/1243 (28%), Positives = 531/1243 (42%), Gaps = 170/1243 (13%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 +P + PL+ G RL+EASAGTGKTF +A L LRLL + P PL VE+LLVVTFTE Sbjct: 6 FEPNQFPLEPGLRLLEASAGTGKTFALAHLVLRLL------SEGPNPLQVEQLLVVTFTE 59 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW-----LLLAERQM 121 AA AELR RI + + +A L+ + + L E I ++Q LLLA ++ Sbjct: 60 AAAAELRDRIARRLQQA-LALLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERL 118 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 D A + TIHGFC+R L A E+G+ L R Q D+W++H L ++ Sbjct: 119 DRADITTIHGFCRRTLQRQALEAGLGPAVSLESQGHDRREQLVHDYWQQHVLLLSPQLLA 178 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPD------------DETLASRHAQIV--- 226 + + P L+ + L G+ + PD ++ SR + + Sbjct: 179 GLQQRGIHPDGLI-SVLANLDGDPALQLDALPDAQDSDLPLAAQLEDAWTSRWQRFLTLW 237 Query: 227 -ARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAK---WIDKI--------SAWAE 274 + D ++ A EL +L R K K WID + + A+ Sbjct: 238 ESSADALEHDLAAAAAELKSLALPYSPYRLKPKPDRLQKVQSWIDSLEGRTPGYDAVLAQ 297 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 E Y P K + DR P+ L AI L+ P L Sbjct: 298 AELQKYFHPGPFTKVAAAAHGDRVS----LPQAELLRAIADLVDGPAEAMLLHFGHW--- 350 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESG-EVLAAAIRTRFPVAMIDEFQDTDPQQ 393 R+ + R + R G++ F +L +LD + L AI R+ A+IDEFQDTDP Q Sbjct: 351 GRQELTRRRERSGQMSFGQLLEQLDPGAGDDGATSPLLQAIGQRYRAALIDEFQDTDPIQ 410 Query: 394 YRIFRRIWHHQPETALL-LIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPG 452 +RI R + P LL ++GDPKQAIY FRG ++ TY A S+ Y L N RS+ Sbjct: 411 WRILERAFTGDPPQHLLVMVGDPKQAIYRFRGGELATYRLAASKTEQCYGLYENRRSSEP 470 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG 512 +V ++N L E+P PV+ L + Q +++ ++ Sbjct: 471 LVRALNALMQ---PGLQRSELPVPPVEPMADKGELAMP---DGQSPLQLLNLDPHHL--- 521 Query: 513 DYQSTMAQVCAAQIRD-WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 S +A C +++ W +RG +L G D+ +LV +A +R AL Sbjct: 522 --DSQVATFCQQLLQEQWPLRSERGSRVLEPG---------DLCLLVSQHSQAEALRSAL 570 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 +PS +S D VFE+L A + L A+ P R + ++G +A DI+ Sbjct: 571 ERHHLPSRLVSKGD-VFESLGAAALQRFLDALALPGHNGRQRLLAGSPLLGWSAADIQ-- 627 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 N WD + + +G+ +L L + +A L+ G R L D+ + Sbjct: 628 NAQPQDWDQLAAALSNLAERLPHQGLTAVLAQLQGSEGLAR--LSLRG--RTLADLQQAA 683 Query: 692 ELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQM-RLESDKHLVQIVTIHKSKGLEY 749 EL+QE +L WL + L+ + + R ++ + + +VT+H+SKGLEY Sbjct: 684 ELVQEQMHKLGLGTLQAADWLRRQRLQDHGESPEAHLCRSDAAESAIAVVTVHRSKGLEY 743 Query: 750 PLVWLPFI--TNFRVQEQAFYHDRHSFEAV-----LDLNAAPE------SVDLAEAERLA 796 P+V PF+ + ++ A R + LDL+ P + + + A Sbjct: 744 PVVICPFLWKGSKAIKAGARQLGRRWMRSPEADPHLDLHLNPHWGQGRLAAQQDQRAQAA 803 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 E RL YVA TR+ LG + D + L L +G + L C Sbjct: 804 EAERLAYVACTRARHLLVLGWPGV---------DLAEPANPLSPWLVEGGLERDLPLHRC 854 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG-------- 908 +T + +PWQ + T R W SYS Sbjct: 855 -----------ETRASNTIKPWQPEPPQGSLALGPTPSRPLDSRWGRASYSAWAHSQVAV 903 Query: 909 ---LQQRGHGI-AQDLMPRLDVDAA----GVASVVEEPTLTPH-----QFPRGASPGTFL 955 +++ G A +L P L+ A+ G+ + E+ T P +FPRGA PG L Sbjct: 904 PPEMREDGRDTDAINLEPALEHTASIPNDGITPLSEKQTSWPELGPLAEFPRGAGPGDAL 963 Query: 956 HSLFEDLDFTQPVDPN------WVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GV 1007 H + E +D+ + V E+L G +W L ++ ++ P+ Sbjct: 964 HRILERIDYGTLAAGDDAQARVVVAEELPRAGLSLEWADTLMSGLSQLMHTPMGGALGAC 1023 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ------FDPLSAGC------PPLEF 1055 L L + EM F LP++ +Q D L+R F+ G L Sbjct: 1024 RLGDLRKGDWLNEMNFDLPLAH----TQPDHLVRSSGLAKVFNAHPGGLFNEGYGQQLNL 1079 Query: 1056 MQV--RGMLKGFIDLVFRHEGRYYLLDYKSNWLGE----------DSSAYTQQAMAAAMQ 1103 + V RG L G IDLVF EG +++ D+KSNWLG+ + YTQ+AMA M Sbjct: 1080 LDVASRGFLTGSIDLVFCWEGTWWVADWKSNWLGQRDGQGTVQQCGPANYTQEAMAELMV 1139 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 ++ Y LQ LY +ALHRYL R+ Y E H GG Y+FLRGV Sbjct: 1140 SNHYPLQAHLYLVALHRYLHWRLPGYTPELHLGGYAYVFLRGV 1182 >UniRef50_A2C8A3 Possible UvrD/REP helicase subunit B n=2 Tax=Prochlorococcus marinus RepID=A2C8A3_PROM3 Length = 1274 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 370/1278 (28%), Positives = 559/1278 (43%), Gaps = 175/1278 (13%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G RL+EASAGTGKTF +A L LRLL G + ELLVVTFTEAA AELR RI Sbjct: 22 GLRLLEASAGTGKTFALAHLALRLLTEGGHQ--------ISELLVVTFTEAAAAELRSRI 73 Query: 77 RSNI-HELRI--ACLRETTDNP----LYERLLEEIDDKAQAAQW---LLLAERQMDEAAV 126 + H L A TD P L + L D +Q QW LL+A +D A + Sbjct: 74 GQRLEHALEGLEALDHGATDKPPDLVLEQWLQCNGHDVSQRHQWISSLLVALESLDLADI 133 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 TIHGFC+R L A ESG + + +L + L + D+W++ L + + + Sbjct: 134 TTIHGFCRRTLRRQALESGAVMDPRLDDSGQQLVQEVVHDYWQQQVLALDAQHVRGLLHA 193 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ----WRDAVGE 242 + L + + + + ++ + ++ +Q A + QQ W+ E Sbjct: 194 GLSVENLAKGLLKLDSDPSLALETHTSNLQSSQPLSSQFDAYLQQCWQQFVDHWQRHGSE 253 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDK--------ISAWAEEETNSYQLPESLEKFS---- 290 LD + S D R + + K ++ W E + S Q S + F+ Sbjct: 254 LDIALSSRAADWRSLGSKDTKPFSPKPKKDRFAILNHWLEAFSQSPQ--HSDQPFTPGYA 311 Query: 291 ----QRFLED----------RTKAGGETPRHPLFEAIDQLLAEPL-SIRDLVITRALAEI 335 Q L D + G E P +PL A+ + +A+ + V AL Sbjct: 312 AIRDQSLLTDYFHPAVVCTVARRCGEENP-NPLMPALQRSIADLCDGPAEQVWNHALHWG 370 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSES--------GEVLAAAIRTRFPVAMIDEFQ 387 +A +R+RG + + ++LS LD +SE+ A+R R+ VA+IDEFQ Sbjct: 371 LSALAERRRQRGVMSYAELLSALDPKPQSETIAQPHPDQQAPWLEALRQRYRVALIDEFQ 430 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNW 447 DTDP Q+R+ + H P+ LL++GDPKQAIY FRG D+ TYM ARS+V L N+ Sbjct: 431 DTDPVQWRLLEGAFAHSPDHLLLMVGDPKQAIYRFRGGDLNTYMHARSKVDRIDALLDNF 490 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 R+ +++ +N L + + R +P +A R + G +++ ++ Sbjct: 491 RTTTPLLDGLNDLMAPG----LRRSKLDVPSLTACSQATPRSLPLGVN--PLQLLNLDEA 544 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 + G S + + + + L + D+ SDI +LV ++AA + Sbjct: 545 THPTGSIPSPL--TSKTNLEEQIPTAVAHAVLDLLQSDSYNFSPSDICILVGRHRQAASI 602 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 R L + +P+ +S D V + AQ + L + P ++L+ +++M N Sbjct: 603 RQGLAVAGVPTRLVSQGD-VLTSEAAQVLQRFLDCLARPSHSSSLKLVACSALMQWNT-- 659 Query: 628 IETLNNDE--HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 E L + E D + F + + G+M L L+ R IA+ L+ G R L Sbjct: 660 -EQLAHAECNGELDQLALRFRNWAINLPRLGLMGCLAELLEGRTIAD--LSERG--RLLG 714 Query: 686 DILHISELLQEA-GTQLESEHALVRWLSQHILEP-DSNASSQQMRLESDKHLVQIVTIHK 743 D+ ++L+QE Q WL + L+P D +Q + + V +VT+H+ Sbjct: 715 DLYQCAQLVQEVIHRQGLDASTAADWLRRQRLQPVDPVPEVRQPHSDVAESAVAVVTVHR 774 Query: 744 SKGLEYPLVWLPFITN---------FRVQEQAFYHDRHS--FEAVLDLNAAPESVDLAEA 792 SKG+EYP+V P++ +R ++ + S + L+ L EA Sbjct: 775 SKGMEYPVVICPYLWQAPSLPHGPLWRSGSESHWCVALSTGWGKGWQLSQQSHQASLQEA 834 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG 852 ERLA YVA+TR+ CSL + L+ RG K+ + G QD Sbjct: 835 ERLA------YVAITRA---CSLLM--LIWARGAKQEGNPLSAWLFGVDAIDAAMQDLTP 883 Query: 853 LRTCIEALCDDD---IAWQTAQTGD-NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 R + A D I AQ Q WQ + +T QR +W +SYS Sbjct: 884 ER--MSAWLDRQQLPITVVPAQLKSMQQRWQPPPLQGELALGQTPQRRLDLSWGRSSYSA 941 Query: 909 LQQRGH---GIA---------------QDLMPRLDV-DAAGVASVVEE-PTL-----TP- 942 H G A Q L P L + D + +A PTL +P Sbjct: 942 WVSAAHTYDGSAPADPLELEEGRDSDQQKLEPMLKLQDQSAIADASRSTPTLNWSDQSPL 1001 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPV-DPNWV---REKLELGGFESQWEPVLTEWITAVL 998 QFPRGA G LH + E LDF +P+ DPN V E+L G + + + + VL Sbjct: 1002 GQFPRGAVAGDCLHRILERLDFCKPLQDPNAVIVIEEELRRAGLDITLLASVQDGLDRVL 1061 Query: 999 QAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD--------PLSA 1048 P+ + G+ L+QL + + E+ F LPI + ++R FD PL+ Sbjct: 1062 STPIGGSLGGLRLNQLHGQRRIHELSFDLPI------AHQGKVLRSFDLASVFHLNPLAR 1115 Query: 1049 -GCPPLEFMQ-----VRGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGEDSSA----- 1092 G P E ++ RG L G IDLVF E R+++ D+KSNW+G S Sbjct: 1116 FGLPYAEMIKGLNVCSRGFLTGSIDLVFTDAEDSLEARWWVADWKSNWIGRRDSEGQAVA 1175 Query: 1093 -----YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 Y AM M H Y LQ LY +ALHR+LR R+ Y+ + H GG +Y+FLRG+ Sbjct: 1176 CGPLHYDDSAMEQQMLLHHYPLQAHLYLVALHRFLRWRLPSYEPKLHLGGYVYVFLRGLP 1235 Query: 1148 KEHPQQGIYTTRPNAGLI 1165 G T+P GLI Sbjct: 1236 GAKAMNGRSLTKPVPGLI 1253 >UniRef50_D0SDD3 Exonuclease subunit V n=2 Tax=Acinetobacter RepID=D0SDD3_ACIJO Length = 1250 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 348/1278 (27%), Positives = 574/1278 (44%), Gaps = 188/1278 (14%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 + QG IEASAGTGKTFT+++L +R+ LG A P +++ TFT AA AEL Sbjct: 20 MSFQGLHWIEASAGTGKTFTLSSLMVRIFLG----AYLPN-----QVIATTFTRAAAAEL 70 Query: 73 RGRIRS-------------NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQ-WLLLAE 118 + R+R+ ++ E I +PL+ ++L + + AQ L L Sbjct: 71 KSRVRARLIETLRYFEGCQSLTEREIQAKIAAEQDPLFTKVLTDYAQRVGFAQERLKLVI 130 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 Q+DE V T+ F Q++L +FESG + + +D Q D R P+ Sbjct: 131 DQLDELFVGTLDSFSQKLLREFSFESGKIERADITDDAQSYTQQLIHDVLREWIQAQPQP 190 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 + + LL+ + Q P+++ + AS Q V + Q+ Sbjct: 191 VVNYL---------LLKQKLKTEQAYVPIVE----NSLNFASAQFQQVEKPTLDLTQFEQ 237 Query: 239 AVGELDAL--IESSGID-----RRKFNRSNQAKW-----IDKISAW-------AEEETNS 279 A+ + L ++ G+ +++ KW I +I A +E + Sbjct: 238 AIDQFTTLDVVQIEGLKDYYAPEGQYHAVLGKKWRTDALIQRILCQDLPAFLTALKEQRA 297 Query: 280 YQL-PESLEKFSQRFLEDRTKAG---------GETPRHPLFEAIDQLL---AE---PLSI 323 Y L EK + + TK + +HP++ + L AE L + Sbjct: 298 YALFAPHFEKTLKHLTDLATKKVLNKCAVDVLEQFEQHPVWRQVRSFLEALAELELNLDV 357 Query: 324 RDLVITRALA-EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAM 382 D + L+ E+++ + + +++ E F + L AL+ E G A ++ R+P+ + Sbjct: 358 LDAYLKYHLSSEVKKRLPQVLQQKSETTFAQQIRTLSEALQGEQGRRFAQFVQARYPLIL 417 Query: 383 IDEFQDTDPQQYRIFRRIW-----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV 437 +DEFQDT+ Q + RIW +HQ ++++GDPKQAIY FRG D+ TY KAR +V Sbjct: 418 VDEFQDTNQDQDDMLARIWRDVQRYHQ--GCMIMVGDPKQAIYGFRGGDMLTYNKARLDV 475 Query: 438 HA----HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 A Y+L N RS +V V+ LF + D ++ + PV++ + +G Sbjct: 476 LAKHGRQYSLKYNHRSVQKLVQVVDALFQRQQD--FGEQVYYQPVEAGTRPHPALVDAQG 533 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 E ++ L+E + AQ A +IRD + G + + L + D + + A+D Sbjct: 534 ENHVPLRWLLLED--------KKNEAQQVAWKIRDLINQGIQ-QQLYVADDPLQFIGAND 584 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I+VL ++ +V+ L L I S R SVFE+ A+++ LL A+M P E +R Sbjct: 585 IAVLSKNHDGLDKVQFELERLGILVNRPSKR-SVFESQVAKDVGALLTAMMHPFDEAKVR 643 Query: 614 SALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 AL + ++ ++ + L + + +FD R +W +G + + ++ + +N Sbjct: 644 RALLSRLLAIDLKQLLELEKQANGLSQFMADFDDIRDMWINKGFLSAWQYALNLFKVWKN 703 Query: 674 LLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 L+A + ER + ++ H++ELL + Q + L W + + P + +L S Sbjct: 704 LVAYQSRDNERTVVNLRHLTELLSQHSEQFQGAQKLYHWYLKQLHLPAEREWELERKL-S 762 Query: 732 DKHLVQIVTIHKSKGLEYPLVWL----------PFITNFRVQEQAFYHDRHS-FEAVLDL 780 + VQ++TIH+SKGLE+ +V+L NF EQ S + ++ + Sbjct: 763 NATGVQLMTIHQSKGLEFKIVFLLGADKDFKEMNKTLNFSTLEQINPTTGQSELQRIVAV 822 Query: 781 NAA----PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH-- 834 N A P ++D AE RL YVALTR+ S V L++ + + K +T + Sbjct: 823 NDANLLDPAAIDQHNERAEAEQHRLWYVALTRA----SHRVYALLQDQ-EYKSNTALTFW 877 Query: 835 QSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 + G L + A+G + T + QP + ++ + A Q Sbjct: 878 RGQAGNLFE----HPASGNEVLL-----------TEKPIRLQPAEHQEIIQLQALAFPEQ 922 Query: 895 RL-PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASV---VEEPTL---------- 940 R P TS+S L Q H ++ M L V + V S + P L Sbjct: 923 RFYPRSK---TSFSALAQ--HLSRREAMDALAVLSEKVGSADDEINHPVLEDVELIQPLA 977 Query: 941 -TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW---VREKLE----------LGGFESQW 986 QFP G + GTFLH +FE +DF D W + + + LG +++++ Sbjct: 978 WIKRQFPMGTTAGTFLHEIFEHIDFQDSGD--WGLEIHRRFKNDSPLLWQELLGKYQNEF 1035 Query: 987 ----EPVLTEWITA----VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA-SQLD 1037 E L W+ A VL+ PL+ G L QL A E FYL +S+ ++A ++ Sbjct: 1036 GQDDETQLVLWMQAWLADVLETPLH-AGFQLKQLKADEHLAEFPFYLSLSDHVLAIKRIQ 1094 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRG--MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 TL +++ G L+ + L G IDLV+ RY++ DYKSN+LG D +Y Sbjct: 1095 TLFQEY-----GIDLLDLNEANSARYLTGSIDLVYFDGQRYHIADYKSNFLGADQQSYNH 1149 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGI 1155 A+ M Y LQ LY +ALHRYL+ + DYD E H G YL+LRG++ + P QG+ Sbjct: 1150 DAIELNMSHASYWLQAGLYLVALHRYLKVNLLDYDIEEHLGQASYLYLRGMNGQ-PDQGV 1208 Query: 1156 YTTRPNAGLIALMDEMFA 1173 + R + I +D + Sbjct: 1209 LSWRASPEFILRLDAILG 1226 >UniRef50_A1KCB1 ATP-dependent exoDNAse beta subunit n=3 Tax=Betaproteobacteria RepID=A1KCB1_AZOSB Length = 1241 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 249/672 (37%), Positives = 345/672 (51%), Gaps = 59/672 (8%) Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 RP+ +DI+VLVRS + A++R AL + SV LS SVF T +A+E+ +L A+ P Sbjct: 576 RPLAPADIAVLVRSHGQGARMRRALAAFGVGSVELSQA-SVFHTEDAEELERVLIAIAEP 634 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 RE + +ALAT+ MG A I L DE A V++ F G+R+IW RG MLR MS Sbjct: 635 AREARVMAALATAAMGYGAAAIAALAADEAALLRVLDRFAGWREIWLARGFGVMLRRWMS 694 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 +A LLA A GERRLT+++H++ELLQ+A E L+R L+ E A+ Q Sbjct: 695 DEGVAARLLARADGERRLTNLMHLAELLQQAAGTASPE-VLLRTLATRRAEEGGEAA--Q 751 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF------RVQEQAFYHDRHSFEAVLDL 780 +RLESD++LVQIVTIH+SKGLEY +V+ PF+ + R +A++ D + VLD Sbjct: 752 LRLESDRNLVQIVTIHRSKGLEYGIVFCPFLFDGYPPPAERGPMRAWHADDGTL--VLDY 809 Query: 781 N--AAPESVDLAE--AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 AA + A AER+AED+RL YVALTR+V C L V R K G ++ +S Sbjct: 810 RSEAAADKTIAARIRAERMAEDMRLAYVALTRAVHRCYLVVGCYARMAFGKPGYSESGRS 869 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL-------N 889 L + G D + D W+ T + D+ E Sbjct: 870 LL-NWMAAGAGLDPEAWAEHKMTPAEIDARWRGLVTTSGGVISLADLPAGEGEALAQDDG 928 Query: 890 AKTLQRLP-----GDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPH- 943 A+ + R+P WR+ S+S L G + R D DA V E P P Sbjct: 929 AERVPRVPRPPQVSAGWRIGSFSALI---FGATHEQAAR-DHDARQVPVEPESPPAPPPA 984 Query: 944 -----QFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE--------KLELGGFESQWEPVL 990 +FPRG G LH++FE +DFT P + E + E G ++ +L Sbjct: 985 ADDILRFPRGPVAGDCLHAVFERIDFTDPGGWDAAIESALADHPQRGEADG--ARLHAML 1042 Query: 991 TEWITAVLQAPL--NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 + VL APL + L L+ + E+ F+LP + + L Sbjct: 1043 RSMLRDVLDAPLTAGPAPLRLGTLTMARRLTELGFHLPAPR----VEAEALNAWLAARGY 1098 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 G P L F + G LKGFIDLVF H+GRY++LD+KSN LG + Y + AAMQAH Y Sbjct: 1099 GVPRLAFTGLEGYLKGFIDLVFEHDGRYWVLDWKSNHLGNAPADYAPARLEAAMQAHGYH 1158 Query: 1109 LQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV----DKEHPQQGIYTTRPNAGL 1164 LQ+ LYT+ALHR+L + DYDY HFGGV+YLF+RGV + G++ RP + Sbjct: 1159 LQHLLYTVALHRHLGRCVPDYDYARHFGGVLYLFVRGVRPGWQADGQPAGVFHHRPEVEV 1218 Query: 1165 IALMDEMFAGMT 1176 + +D + AG T Sbjct: 1219 VQALDHLLAGGT 1230 >UniRef50_Q0IBA6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Synechococcus RepID=Q0IBA6_SYNS3 Length = 1212 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 357/1253 (28%), Positives = 547/1253 (43%), Gaps = 174/1253 (13%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 ++ P PL G RL+EASAGTGKTF +A L LRL+ R L ++ELLVV Sbjct: 1 MSSRFQPNHYPLDAGIRLLEASAGTGKTFALAHLVLRLVT--------ERKLNLKELLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNP------------LYERLL---EEIDDK 107 TFTE+A AELR RI +++ A L+ T+N + E L+ ++ + + Sbjct: 53 TFTESAAAELRDRIGRRLNDALQALLQNQTNNSNSQTDSSPTDAVMEEWLILHGQDPNTR 112 Query: 108 AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF 167 A LL A ++ A + TIHGFC+R L A ++G E L D L + D+ Sbjct: 113 RTIASNLLEALEGLERADITTIHGFCRRSLRRQALQNGTAMEVCLENDSQHLSQEVAYDY 172 Query: 168 WRRHCYPLP-REIAQVVFETWKGPQ---ALLR---DINRYLQG-------EAPVIKAPPP 213 W LP +++ ++ Q AL R D + G E P+I+ Sbjct: 173 WEHQVLALPASDVSGLLHAGLSADQLSHALSRLDSDCAVRIAGTEGSDHLEGPLIEC--- 229 Query: 214 DDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSG-IDRRKFNRSNQAKWIDKISAW 272 D+ L S A +T + A + S G D + ++ + +++SAW Sbjct: 230 FDQWLQSSWTAFEAEWNTNGRTLETAFRDCATDWRSQGQTDTKPYSPKPKKDRANELSAW 289 Query: 273 AEEETNSYQLPESLEKF-SQRFLEDRTKAG--GETPR-----HP------LFEAIDQLLA 318 ++ ++ S +Q L D G +T R HP L +AI L Sbjct: 290 ISQQNSTQPFRISYGDVRNQSLLGDYFHPGCFSKTARRCNEIHPNLPQPTLQKAIAALWD 349 Query: 319 EPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRF 378 P + V AL +T+A + ++G + F +L LD + I+ R+ Sbjct: 350 GPA---EKVWRHALTHGLQTLAARRAQQGVISFSGLLDALDPQATDAEPKRWLVPIQRRY 406 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 VA+IDEFQDTDP Q+R+ + + P LL++GDPKQAIY FRG D+ TY +AR + Sbjct: 407 RVALIDEFQDTDPLQWRLLQACF-ATPNHLLLMVGDPKQAIYRFRGGDLNTYKQARQQAD 465 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI-PVKSAGKNQALRFVFKGETQP 497 L N R+ P ++ ++N+ + E+P + P + AL QP Sbjct: 466 QIDNLLDNRRTTPSLMEAMNQWMAPGLKRSKL-EVPRVTPCAT-----ALPLELPDGEQP 519 Query: 498 AMKMWLMEGESCGVGD---YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 + L +S +ST+ + A Q L++ D + + SD+ Sbjct: 520 LQLIDLQADDSDSPPTRTALESTIPPLVACQALH-----------LLDSDPS--LTPSDL 566 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 VLV ++A VR+ L +PS +S D V T A E+ LL A+ TP LR Sbjct: 567 CVLVSRHRQAEAVREQLAQRGLPSRLVSPGD-VLSTTGAAELQHLLDALTTPADGGRLRR 625 Query: 615 ALATSMMGLNA---LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIA 671 +++M + D ET N D D + + + G++ L L+ R +A Sbjct: 626 LACSALMQWTSHQLQDAET-NGD---LDRLAGQLRNLQDDLPFLGLLGCLSQLLEGRMLA 681 Query: 672 ENLLATAGGERRLTDILHISELLQEA----GTQLESEHALVRWLSQHILEP-DSNASSQQ 726 + L++ G R L DI + L+Q+A G L S WL + L+P + ++Q Sbjct: 682 D--LSSRG--RLLGDIQQCARLVQDAMHRQGLDLGSA---ADWLRRQRLQPIEPTPDNRQ 734 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--FYHDRHSFEAVLDLNAAP 784 + + V +VT+H+SKGL+YP+V P++ + + + + E + P Sbjct: 735 PHSDLAESAVAVVTVHRSKGLQYPVVICPYLWQAPADGKGPLWRNPPNDPEGTWQVALNP 794 Query: 785 ------ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 ++ + + + AE RL YVALTR+ H V V G D + + + Sbjct: 795 HWGHGHKAAERNQDDSAAEAERLAYVALTRAERHL---VVFWVAAAGQ---DANPLANWV 848 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPG 898 L + +P + L L W+ A ++ + +++ +TL R Sbjct: 849 KELSMRDKPLASRHLPPETTTL----PFWRPAP-------RIETLQLSDVPQRTLDR--- 894 Query: 899 DNWRVTSYSGL--QQRGHGIAQDLMPR-----LDVDAAGVASVVEEPTLTPHQ------F 945 +W +SYS Q GH PR D+DA E P T Q F Sbjct: 895 -SWGRSSYSAWISTQNGHHKPAPADPRNLEEGRDIDAVADTEAPESPANTADQNGPLADF 953 Query: 946 PRGASPGTFLHSLFEDLDFTQPVD--PNW--VREKLELGGFESQWEPVLTEWITAVLQAP 1001 P+G G LH + E + F P D PN V E++ G + ++ + + VL+AP Sbjct: 954 PKGPGAGDCLHRILEQVSFQGPADQAPNQAVVAEEIGRAGIDLEYCDAVITALNTVLKAP 1013 Query: 1002 LNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ-- 1057 L + LS LSA + E+ F LP+++ L F+ S + Q Sbjct: 1014 LGGPLKDLKLSDLSAGRRLHELSFDLPVAQRGKPVNSAGLAHAFEADSDHRFGQHYAQSL 1073 Query: 1058 ------VRGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGE-DSSA---------YTQQ 1096 RG L G IDLVF R+++ D+KSNW+GE D S Y+Q Sbjct: 1074 RQLDIRSRGFLTGSIDLVFTDGENPATARWWVADWKSNWIGERDDSGRGVACGPRHYSQA 1133 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 AM M +H Y LQ LY LAL RYLR R+ YD E H GG Y+FLRG++ E Sbjct: 1134 AMEEQMLSHHYPLQAHLYLLALDRYLRWRLDGYDPERHLGGYAYVFLRGINPE 1186 >UniRef50_B5IMW6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMW6_9CHRO Length = 1248 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 370/1251 (29%), Positives = 542/1251 (43%), Gaps = 178/1251 (14%) Query: 13 LPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 PL+ G RL+EASAGTGKTF++A L LR + A P + +LLVVTFT AA AE Sbjct: 10 FPLEPGLRLLEASAGTGKTFSLAHLVLRYV----SEAEVP----LRQLLVVTFTNAAAAE 61 Query: 72 LRGRIRSNI-----HELRIACLRETTD--NPLYERLLE-EIDDKAQAAQWLLLAERQMDE 123 LR RI + H R ET + +P E L+ A LLLA +D Sbjct: 62 LRDRIGQRLQTALGHLDRGEAAVETGNPVDPSLEAWLQWARPRAALLRAPLLLALEDLDG 121 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 A + TIHGFC R L A E+G E QL D + L Q C D+WR+ LP + V Sbjct: 122 ADITTIHGFCLRTLQRQALEAGQPPELQLDSDAAPLVRQVCHDYWRQQVLALPPHLLDGV 181 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPD----DETLASRHAQIVA----RIDTVKQQ 235 KGP+AL+ D+ + L G+ + P PD D+ LA + + R + QQ Sbjct: 182 QRLVKGPEALV-DVLQTLDGDPALAVDPLPDGMEADQPLAPQLESLWQSRWDRFQLLWQQ 240 Query: 236 ---------------WRDAVGELDALIESSGIDRRKFNRSNQ-AKWI-------DKISAW 272 WRD L A + + + +R ++WI D + Sbjct: 241 HGEALEAELRAAAGHWRD----LGASKTTPYSPKPRKDRCQALSQWIQHQGSKGDYAATL 296 Query: 273 AEEETNSYQLPESLEKFSQRFLEDRTKAGGET-----PRHPLFEAIDQLLAEPLSIRDLV 327 ++E Y P + K ++ + T +G P+ PL EA+ L P + V Sbjct: 297 EQKELKEYFHPGAFLKVARPI--EATASGPAAREPSLPQRPLLEAVADLREGPA---EAV 351 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQ 387 + A R +A + R+G +G+ +L LD E+ L A+ R+ ++DEFQ Sbjct: 352 LLHAAHWGRRELAHRRERQGRMGYGQLLESLDPGDDPEAPCPLLDAVGERYSAVLVDEFQ 411 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH---YTLD 444 DTDP Q+RI R + + L+L+GDPKQAIY FRG ++ TY A + A LD Sbjct: 412 DTDPIQWRILSRAFDAR-RHRLVLVGDPKQAIYRFRGGELATYRLAYRQAAADGGISRLD 470 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPF----------IPVKSAGKNQALRFVFKGE 494 TN+R+ P ++ +N L + P P G L ++ G Sbjct: 471 TNYRATPSLIAGLNALMAPGLPRSGLAVPPVQPPPSPSGWSAPGGEGGDAPTLSLLWLGS 530 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 +PA + S + +A++ AA+IR GEA +D+ Sbjct: 531 DRPAGEA--PPTTSAVEQELPDRVARLVAAEIRT-------GEA------------PADL 569 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 +LV + ++A Q+R AL I S +S+ D VF + A + LL + P LR Sbjct: 570 CLLVSTHRQAGQLRVALARAGIASRLVSDGD-VFASDGATALQRLLDGLAHPGDPRRLRL 628 Query: 615 ALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN- 673 A+ ++G +A I ++ W + E ++ R R +P L L + ++ Sbjct: 629 LAASPLLGWSAGAIAAAGAEQ--WSALSE------KLLRGRDGLPRLGLLGVLAALLDDE 680 Query: 674 LLATAGGERR-LTDILHISELLQE-AGTQLESEHALVRWLSQHILEPD-SNASSQQMRLE 730 LA G E R L D+ + LLQE T A WL Q L PD S S Q + Sbjct: 681 GLARLGLEGRVLADLNQCALLLQERIHTDQLGADAAAEWLRQRRLAPDPSPPESHQPNSD 740 Query: 731 SDKHLVQIVTIHKSKGLEYPLVWLPFI----------TNFRVQEQAFYHDRHSFEAVLDL 780 + V +VT+H+SKGLEYP+V P++ R Q DR VLDL Sbjct: 741 VEDEAVWVVTVHRSKGLEYPVVICPYLWKAPHANPRGLGLRWQPS----DRTG--PVLDL 794 Query: 781 NAAP------ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK------K 828 + ++++ A L E R YVA TR+ L P+ + G+ Sbjct: 795 HLGSRWGRGHQALEQHRAAELQEAERRAYVACTRAKRRLLLAWGPVKGQAGNPLHPWLLA 854 Query: 829 GDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL 888 + + +G+ + L + A + P + +T L Sbjct: 855 AQAALADADDDPYATQGDGELRQALELGLAARQVPMVLMTVPPAAGPLPGRPPATATEPL 914 Query: 889 N-AKTLQRLPGDNWRVTSYSGLQQRGHGIA-QDLMPRLDVDAAG----VASVVEE--PTL 940 QR +W +SY+ + H A Q L + DA +A+V +E P Sbjct: 915 TLGPVPQRRLDHSWGRSSYTSWTRGSHAAAPQALEEGRETDALAREPELAAVDQEPWPGE 974 Query: 941 TP-HQFPRGASPGTFLHSLFEDLDFTQPV--DPNWVREKLELGGF-ESQWEPVLT---EW 993 +P PRG+ G LH + E LD+ +P VR +LE G E VL+ Sbjct: 975 SPLADIPRGSRAGDCLHRILESLDYQRPATQQSEAVRRELERSGIGRDHLEDVLSGVERL 1034 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 + + PL + L+ L ++ EM F L + P+ + D+L R F G Sbjct: 1035 RLSPMGGPLGD--FRLAGLERGSRINEMNFDLTLG-PVTS---DSLARPFRDHPGGSFGA 1088 Query: 1054 EF--------MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS----------AYTQ 1095 + +Q RG L G IDLVF H+GR+++ D+KSNWLGE + Y Sbjct: 1089 GYADQLAALSVQGRGFLTGSIDLVFCHQGRWWVADWKSNWLGERGADGQPLHCGPRHYGA 1148 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 A+AA M A+ Y LQ LY +ALHRYLR R+ YD H GG Y+FLRG+ Sbjct: 1149 AALAALMAANHYPLQAHLYLVALHRYLRWRLRGYDPARHLGGYAYVFLRGL 1199 >UniRef50_A5GLW9 Exodeoxyribonuclease V beta chain n=2 Tax=Synechococcus RepID=A5GLW9_SYNPW Length = 1229 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 364/1263 (28%), Positives = 541/1263 (42%), Gaps = 193/1263 (15%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 +P R PL G RL+EASAGTGKTF +A L +RL++ R L ++ LLVVTFTE Sbjct: 12 FEPNRYPLNPGLRLLEASAGTGKTFALAHLVMRLVV--------ERELKLDALLVVTFTE 63 Query: 67 AATAELRGRIRSNIHEL--RIACLRE-------TTDNPLYERLLEEIDD---KAQAAQWL 114 AA ELR RI + + CL + TD L E L E D + A L Sbjct: 64 AAADELRDRIGKRLDGALQGLLCLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLL 123 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 L A ++ A + TIHGFC+R L A +SG + + +D L + D WR Sbjct: 124 LEALEALERADITTIHGFCRRTLRRQALDSGRSMDLSVDDDPQTLVEEVAHDLWREQVLT 183 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 L + + ++ L ++ R L G+ V A D E + + A ++Q Sbjct: 184 LDPDDVAGLLQSGLREDTLTAELLR-LDGDCGVRIAE--DAEVIDTETALRDVFPIWLEQ 240 Query: 235 QWRDAVGEL-----DAL----------IESSGI-DRRKFNRSNQAKWIDKISAWAEEETN 278 +W VGEL DAL S G D + ++R+ + +S W + + + Sbjct: 241 RWLQ-VGELWSQDGDALERCLRDCAQDWHSLGCKDTKPYSRNPRKNRAALLSTWLQTKND 299 Query: 279 SYQLPESLEKFSQR-----------FLEDRTKAGGETPRHP---LFEAIDQLLAEP--LS 322 + LP + F + K G + P P L AI +L P + Sbjct: 300 TQSLPIRYANVRNQDLLGTYYHPGVFAKTARKCGEDAPSLPRPELMRAIAELWDGPGEQT 359 Query: 323 IRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAM 382 R L+I R L EI + ++RRG +GF +L L+ S S + A+R R+ VA+ Sbjct: 360 WRYLLI-RGLQEIDQ----RRQRRGVVGFSGLLDALNPTDPSRS-QAWITALRERYKVAL 413 Query: 383 IDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 IDEFQDTDP Q+ + + + + LL++GDPKQAIY FRG D+ TY AR++V Sbjct: 414 IDEFQDTDPLQWNLLHQCFASS-DHLLLMVGDPKQAIYRFRGGDLQTYKTARAQVDRIDD 472 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L N R+ P ++ ++N L S E+ +P SA K ET P + Sbjct: 473 LLDNRRTTPPLMEAMNHLMSP---GLKHSEL-SVPAVSA-KASCTPLTLPPETAPLQILA 527 Query: 503 LMEGESCGV---GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 ++ G D ++T+ A + L + G+DA + +D +LV Sbjct: 528 FNPDDADGSRSRTDLEATIPCFAADLL------------LQILGNDAS-LTPADFCILVS 574 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 ++A +RD L+ + +PS +S D V + A E+ W L + P LR A + Sbjct: 575 RHRQAEAIRDQLSKVGLPSRLISPGD-VLSSQGAGELQWFLDGLARPADNERLRRLAAGA 633 Query: 620 MMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG 679 +M A +E D+ + + + G+M L L+ +A+ L+ G Sbjct: 634 LMQWPAHTLEACEQTGQL-DLFAAKLQTLAEALPRLGLMGCLAQLLEGETLAD--LSIRG 690 Query: 680 GERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASSQ-QMRLESDKHLVQ 737 R L D+L + L+Q+A Q + WL + L P N Q Q + V Sbjct: 691 --RLLGDLLQCARLVQDAMHRQGLNAAGGADWLRRQRLHPPDNVPDQRQPYSDLAASAVA 748 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQEQAFY------HDRHSFEAVLD--LNAAPESVDL 789 +VT+H+SKGL+YP+V P++ + S+ L+ + + Sbjct: 749 VVTVHRSKGLQYPVVICPYLWEAPSPGKGPLWRLPAGDPTGSWRVALNPHWGSGQAAACA 808 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD 849 + +AE RL YVALTR+ H L A G G P D Sbjct: 809 DALDCMAEAERLAYVALTRAERHLVLFSA--------------------GEANPSGNPLD 848 Query: 850 AAGLRTCIEALCDDD---IAWQTAQT-GDNQPW----QVNDVSTAELNAKTLQRLPGDNW 901 + AL D + I+ ++ +Q W Q + A + L R +W Sbjct: 849 P-----WLSALADGNHPHISLHHPRSPAAHQRWTPPRQNQTLQCAPVPKGALDR----SW 899 Query: 902 RVTSYSG--LQQRGHGIAQDLMPR-----LDVDAAGVASVVEEP--------------TL 940 +SYS H ++ P DVDA S + EP L Sbjct: 900 GRSSYSAWIASASNHHPSKRSNPHELEEGRDVDAGTDTSSLREPAVGLSSDVERELGDAL 959 Query: 941 TPHQ-----FPRGASPGTFLHSLFEDLDFTQPV----DPNWVREKLELGGFESQWEPVLT 991 P FPRGAS G LH + E L F QPV + V +L G + + + Sbjct: 960 PPRNGALRTFPRGASAGDCLHRILEQLPFDQPVEQPANQELVARELSRSGLDLSLQDDVL 1019 Query: 992 EWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF--DPL- 1046 I+ +L++P + L+ L + + E+ F LP++ A + TL R F DP Sbjct: 1020 SAISTLLRSPFGGPLGQLRLADLHSGRRLHELSFDLPVAHAGSAVRASTLARAFRCDPKQ 1079 Query: 1047 ---SAGCPPLEFMQV--RGMLKGFIDLVFR-----HEGRYYLLDYKSNWLGEDSSA---- 1092 S LE + + RG L G IDLVF R+++ D+KSNW+GE Sbjct: 1080 RFGSDYAAQLETLDIHSRGFLTGSIDLVFTDGDDLSTARWWVADWKSNWIGERDGEGQPL 1139 Query: 1093 ------YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 YTQ AM M H Y LQ LY +ALHR+L+ R+ DY E H GG Y+FLRGV Sbjct: 1140 HCGPRHYTQAAMEEQMLQHHYPLQAHLYLVALHRFLQWRLIDYSPERHLGGYAYVFLRGV 1199 Query: 1147 DKE 1149 ++ Sbjct: 1200 SEQ 1202 >UniRef50_A3ETY5 Putative exodeoxyribonuclease V, beta subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY5_9BACT Length = 1101 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 340/1207 (28%), Positives = 527/1207 (43%), Gaps = 152/1207 (12%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ +ET L LPL+G IEASAGTGKT T+A LYL ++L S P E +L Sbjct: 1 MTGFSETPLYLGLPLEGIHAIEASAGTGKTTTLALLYLSVIL----SGVSP-----ENIL 51 Query: 61 VVTFTEAATAELRGRIRS---NIHELRIACLRETTDNPLYERLLEEID-DKAQAAQWLLL 116 VVTFT AA ++R RI+ ++ + R E P LE ++ D L Sbjct: 52 VVTFTRAAAQDVRERIQKLLEDVRQWRSGSKAEIL--PDLRAYLETLETDPLLLDMRLRE 109 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A D A + TIH FCQ +L+ +F G L+ ++ + Y++ WR Y Sbjct: 110 ALVVFDRAPIQTIHSFCQSLLSQMSFLLGAPANLVLVPEDQPVLYESSVRLWRSLFYGRD 169 Query: 177 REIAQVVFETWK-GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 +A+ W+ GP +R A + P ET +++ + +Q Sbjct: 170 SRLAEFFLSVWEDGPGGWVRMFR-----TASARRGSP---ETCFRPVEEVMEQYRARRQT 221 Query: 236 WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 +R+A+G + RS + + E + L + F Sbjct: 222 FREALGIVFP------------ERSREVLPHRVRDLLGDREIPALGLSYDDADLGETF-- 267 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPL-SIRDL--VITRALAEIRETVA----REKRRRGE 348 P +A+ +LL L S RDL VI + ++ T RE+ RG Sbjct: 268 -----------PPGEDALRELLGRTLQSARDLQEVIRSSFRDLAGTWKHRELREREVRGI 316 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-QPET 407 +DD++ R+ +L ES +A +R RFPVA +DE QDT Q IF RI+ +P + Sbjct: 317 ATYDDLILRVADSLERES---VAQRLRDRFPVAFVDESQDTSRDQSGIFARIYRDPRPGS 373 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT--------LDTNWRSAPGMVNSVNK 459 AL IGDPKQ+IY FRGAD+ Y++ + + L N+RS+PG++++VN+ Sbjct: 374 ALFWIGDPKQSIYRFRGADVGAYLEFSRQAKSSPASPASPPLRLSVNYRSSPGVLHAVNR 433 Query: 460 LFSQTDDAFMFREIPFIPVK--SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 LF + F+ + + P S K + + F G + G D Sbjct: 434 LFGRHPSPFLLEGVSYHPSSPVSGRKPELVDPAFSGSC-------FLVYPGRGPKDKLDD 486 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 A+V A ++ D L +G+ +L+N RP+ ASDI+VLV + +V IP Sbjct: 487 FARVTADEV-DRLLSGK----ILLND---RPLAASDIAVLVPKNDDGERVAGFFRERGIP 538 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637 S SVF T EA E+ +L A+++P R L AL T + G +A I+ L D Sbjct: 539 YNSASP-GSVFHTREADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRIDGLVRDPEQ 597 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697 V E F ++WR G+ R L + LL +AG R+ D + + +++A Sbjct: 598 ARPVQEVFLEASRLWRTHGIRAAFRELFFRMGVWTRLL-SAGRTRQRID--RLVDRIEKA 654 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF- 756 Q + R+ S+ L P+ + + + E V I+T+HKSKGLE+P+V++PF Sbjct: 655 AGQFPTPPDQHRFFSRARLSPEGESHEETVGGEPGTG-VHILTVHKSKGLEFPVVFVPFG 713 Query: 757 -ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL 815 R +E+AF + E +E LRLLYVALTR+ L Sbjct: 714 IPEKTRKEEEAFREED------------------GEDSDQSESLRLLYVALTRARERVYL 755 Query: 816 GVAPLVRRRG---DKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD--DDIAW--- 867 PL R++ D +TD H GR + + +R +E D +++ Sbjct: 756 -FCPLNRKKQSALDHLLETDRHLE--GRREKTVTEKRFFAMREALEEAFSGVDGVSFFEP 812 Query: 868 --QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH-GIAQDLMPRL 924 + + P + V E+ ++L RVTS++ + RG A + L Sbjct: 813 RESSGERNHKTPKEQGKVED-EIVVRSLAHPLPVPRRVTSFTAIVARGEDSDAWNGTDPL 871 Query: 925 DVDAAG---VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW-VREKLELG 980 D G ++VE P F G F+H + E+ W VR K Sbjct: 872 IGDEDGEDLSGNLVERPGAAGRAF------GVFVHGVLEEAG-------KWIVRYKKAKK 918 Query: 981 GFESQWEPVLTEWITAVLQA-PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 S+ + + EW+ + + P +E G + +Q +PIS +A LD Sbjct: 919 ISPSRAD--VREWLRSSFPSRPSDEVGGWTASALELAEQGLCTPLIPISGLPLADLLDDR 976 Query: 1040 IRQFDPLSAGCPPLEFM---QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 R +P P E +V L+G ID+V YL+DYK+N+L + + Y + Sbjct: 977 SRFEEPFLLRLPDEENAGEREVASHLRGVIDVVVWSGKTVYLIDYKTNFLTAEGNPYAPE 1036 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIY 1156 ++ + HRYDLQ ++Y+ A R+L A E FGG ++LFLRG+ +E + Sbjct: 1037 SLERVLSDHRYDLQARIYSGACRRHL----ALTGNEGEFGGFLFLFLRGMGRERGSGTVL 1092 Query: 1157 TTRPNAG 1163 T P G Sbjct: 1093 WTPPKEG 1099 >UniRef50_A6W6P2 Exodeoxyribonuclease V, beta subunit n=2 Tax=Actinomycetales RepID=A6W6P2_KINRD Length = 1125 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 293/945 (31%), Positives = 433/945 (45%), Gaps = 116/945 (12%) Query: 320 PLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRF 378 P S +L + AL RE AR++ RR LGFDD+L+RL AL +G V +R R+ Sbjct: 208 PGSPENLRVRFALGVRREVEARKRSRR-VLGFDDLLTRLRDALTDPVAGPVACERLRRRY 266 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 V ++DEFQDTD Q+ + R +H Q L+LIGDPKQAIYAFRGAD+ +Y+ A Sbjct: 267 SVVLVDEFQDTDAVQWDVLRTAFHGQ--GPLVLIGDPKQAIYAFRGADVRSYLDAAGVAG 324 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 TL TN RS P ++ L A + I PV +A AL G PA Sbjct: 325 TTATLSTNHRSDPLVLAGTAALLRGA--ALGEQRIVVRPVDAAHAAAAL-VDGSGAPDPA 381 Query: 499 -MKMWLMEGESC--------GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 +++ ++E + VG+ ++ +A+ AAQ+ L+ G R + R + Sbjct: 382 PVRVRVLERDGLPTTGRGLPPVGEARAVVARDTAAQVVAVLREGLR---VRPRDGGERDL 438 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 A D++VLVR+ +AA V++ L +P V LS SVF T AQE + LL+AV P R Sbjct: 439 EAGDVAVLVRTGAQAALVQEELRRRGVPCV-LSRGPSVFATPAAQEWISLLEAVEQPHRA 497 Query: 610 NTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARN 669 +R +S +G +A +++ + A D + + + + +RGV + A Sbjct: 498 PRVRRVALSSFVGRSAAELDAAGD--RATDELSVQLREWGAVLTERGVAGAFAVVGEAHR 555 Query: 670 IAENLLATAGGERRLTDILHISELL--QEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 + LL GGERRLTD+ HI+E+L + A +L+ WL + E +A ++ Sbjct: 556 LPGRLLGVEGGERRLTDLRHIAEVLHRESALNPGGGVSSLLSWLRARVEEAAGDADRERS 615 Query: 728 -RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR----HSFEAVLDLN- 781 RL++D+ VQI T+H SKGLE+ +V +PF + DR H+ + L+ Sbjct: 616 RRLDTDRAAVQIATVHTSKGLEFEVVCVPF--GWDAPGGGGSKDRLPVAHAPDGPRALHV 673 Query: 782 ---AAP---ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 AP + A+ E L E+LRLLYVA+TR+V + AP + + Sbjct: 674 GGPGAPGYAAACRAADTEDLGEELRLLYVAVTRAVSRLLVWWAP----------SQNTEE 723 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ---TGDNQPWQVNDVSTAE----- 887 AL RLL +D + + D+ ++ + A G + + T E Sbjct: 724 GALHRLLLA---EDPLAVPESLPVPGDEVLSSRLASRFPAGGPVAVETVPLRTPEDRLPA 780 Query: 888 ----LNAKTLQRLPGD---NWRVTSYSGLQQR-----GHGIAQDLMPRLDVDAAGVASVV 935 + R G WR TSYSGL + G G A P +DV V Sbjct: 781 VAAPAAHLAVARFRGAVDLGWRRTSYSGLTRGVHDGPGAGHAVLAGPEVDVTDDEVDLDA 840 Query: 936 E------------EPTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGF 982 T++P P G GT +H++ E D P D L F Sbjct: 841 AGATAADDDPRGWRATVSPMADLPAGTGFGTLVHAVLEGFDPAVP-DRTAHLAALAREQF 899 Query: 983 ESQWEPVLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPL--------- 1031 + Q L + VL+ L G +L ++ E++F +P++ Sbjct: 900 DPQPAEDLALALGPVLRTGLGPLAGGAALEGFPVADRLAELDFEMPLAGGDAAGPAGPRV 959 Query: 1032 --IASQLDTLIRQFDPLSAGC-----PPLEFMQVRGMLKGFIDLVF-RHEGRYYLLDYKS 1083 +A L + DP+ P L +RG L G ID V R EG + ++DYK+ Sbjct: 960 GDVAGLLRRHLPPGDPVHRYADALEDPVLGEEGLRGYLTGSIDAVLRRREGGFLVVDYKT 1019 Query: 1084 NWLGEDSSA-----YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 N LG Y ++A+ A+ A Y LQ LY +ALHR+LR R YD H GGV Sbjct: 1020 NRLGAPGEILTAWHYRREALDEAVLAAHYPLQALLYCVALHRFLRWRQPGYDPAVHLGGV 1079 Query: 1139 IYLFLRGV-DKEHPQ------QGIYTTRPNAGLIALMDEMFAGMT 1176 +YLFLRG+ E P G+++ RP AGL+ + E+ AG T Sbjct: 1080 LYLFLRGMCGPEVPAGEDGVPPGVWSWRPPAGLVVDLSELLAGRT 1124 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 24/161 (14%) Query: 20 LIEASAGTGKTFTIAALYLRLLL-GLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 ++EASAGTGKT+TIA L R + G+ TV++LLVVTF AATAELR R+R Sbjct: 23 VLEASAGTGKTYTIAGLVTRYVAEGVA---------TVDQLLVVTFGRAATAELRDRVRE 73 Query: 79 NIHELRIACLRETTDNPLYER------LLEEIDDKAQAAQW---LLLAERQMDEAAVFTI 129 R+ R+ +P R L D A+AA+ L A D A V TI Sbjct: 74 -----RLVATRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFDTATVATI 128 Query: 130 HGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 H FC+++L + + L+ED L + C D + R Sbjct: 129 HEFCRQVLTSLGTAADVDPSATLVEDVDDLVEEVCDDLYLR 169 >UniRef50_P96920 Exodeoxyribonuclease V beta chain n=28 Tax=Actinomycetales RepID=EX5B_MYCTU Length = 1094 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 272/915 (29%), Positives = 409/915 (44%), Gaps = 108/915 (11%) Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 R AE+ E + R K R GF+D+L RL +AL + +R R+ + ++DEFQDT Sbjct: 209 RFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA-RDRMRERWRIVLVDEFQDT 267 Query: 390 DPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRS 449 DP Q+R+ R + +AL+LIGDPKQAIY FRG DI TY+KA A YTL NWRS Sbjct: 268 DPMQWRVLERAFSRH--SALILIGDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRS 325 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 +V S+ + DA + I V+ + A + ++ +++ + Sbjct: 326 DRALVESLQTVLR---DATLGHAD--IVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTL 380 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA----RPVRASDISVLVRSRQEAA 565 G Y T A V +R + + + A RPV A+DI+V+V ++A Sbjct: 381 G---YDGT-AHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAADIAVIVEHHKDAR 436 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 R+AL IP++Y + D VF + A++ L LL+A P+R +R+A T G Sbjct: 437 ACRNALAEAGIPAIYTGDTD-VFASQAAKDWLCLLEAFDAPQRSGLVRAAACTMFFG--- 492 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIW----RKRGVMPMLRALMSARNIAENLLATAGGE 681 ET + D + + G + W R RGV + +A A + +L+ GGE Sbjct: 493 ---ETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLA-GMGRRVLSQRGGE 548 Query: 682 RRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT 740 R LTD+ HI++LL EA + L WL + + + RL+SD VQI+T Sbjct: 549 RDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQA-KAGAGPPEHNRRLDSDAAAVQIMT 607 Query: 741 IHKSKGLEYPLVWLPFI--TNFRVQEQAFYHD---RHSFEAVLDLNAAPESVD-LAEAER 794 + +KGL++P+V+LPF N R + YHD R + D A +V+ L E Sbjct: 608 VFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEA 667 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 ++LRL YVALTR+ AP D L RLL+ P + Sbjct: 668 AHDNLRLTYVALTRAQSQVVAWWAPTF----------DEVNGGLSRLLRGRRPGQSQVPD 717 Query: 855 TCIEALCDDDI-----AWQTAQTGDNQPWQVNDVSTAE-------LNAKTLQRLPGDNWR 902 C + D+ W+ A + + S+ E + R WR Sbjct: 718 RCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWR 777 Query: 903 VTSYSGLQQRGHGIAQDLMP----RLD-VDAAGVASVVEEPTLTP--HQFPRGASPGTFL 955 TSYS L + + P R D V+ A VA+ LT P GAS G+ + Sbjct: 778 RTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLV 837 Query: 956 HSLFE-----------DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE 1004 H++ E +L+ W ++ +Q P L + + PL Sbjct: 838 HAVLETADPAAPDLAAELEAQVRRHAPWWTVDVD----HAQLAPELARALLPMHDTPLGP 893 Query: 1005 TGVSLS--QLSARNKQVEMEFYLP------------ISEPLIASQLDTLIRQFDPLSA-- 1048 +L+ Q+ R++ E++F +P +S + L + + DPLS Sbjct: 894 AAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYA 953 Query: 1049 ---GCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 G L +RG L G ID+V R G RY ++DYK+N LG+ ++ Y + + AM Sbjct: 954 DRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLH 1013 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG-------VDKEHPQQGIYT 1157 Y LQ LY + LHR+LR R DY H GGV+YLF+RG V HP G++T Sbjct: 1014 SDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHP-AGVFT 1072 Query: 1158 TRPNAGLIALMDEMF 1172 P L+ + ++ Sbjct: 1073 WNPPTALVVALSDLL 1087 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 74/142 (52%), Gaps = 19/142 (13%) Query: 3 DVAETLDPLRLPLQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 D E L PL P +G ++EASAGTGKTF +A L R L +AA T++E+L+ Sbjct: 2 DRFELLGPL--PREGTTTVLEASAGTGKTFALAGLVTRYL---AETAA-----TLDEMLL 51 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNP----LYERLLEEID-DKAQAAQWLLL 116 +TF AA+ ELR R+R I E + L+ D P L E LL D ++AQ L Sbjct: 52 ITFNRAASRELRERVRGQIVEA-VGALQ--GDAPPSGELVEHLLRGSDAERAQKRSRLRD 108 Query: 117 AERQMDEAAVFTIHGFCQRMLN 138 A D A + T H FC +L Sbjct: 109 ALANFDAATIATTHEFCGSVLK 130 >UniRef50_B0VLS1 Exonuclease V, beta chain n=13 Tax=Acinetobacter RepID=B0VLS1_ACIBS Length = 1232 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 261/939 (27%), Positives = 421/939 (44%), Gaps = 115/939 (12%) Query: 306 RHPLFEAIDQLL------AEPLSIRDLVITRALA-EIRETVAREKRRRGELGFDDMLSRL 358 +HP + I QL AE + + E+++ + + + +GE F + L Sbjct: 330 QHPCIQQIQQLFGVLKNYAEQFDQLHIYLKAYFCVEVKKRLPQVLQNKGETTFSQQIRTL 389 Query: 359 DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET----ALLLIGD 414 AL+ E G+ A ++ R+P+ ++DEFQDT+ Q + IW H PE ++++GD Sbjct: 390 SEALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWRH-PERYQKGCMIMVGD 448 Query: 415 PKQAIYAFRGADIFTYMKARSEVHA----HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 KQAIY FRG D+ T++ A ++ A Y L N RS +V V+ LF + D Sbjct: 449 RKQAIYGFRGGDMLTFLNAYKDIQAKHGREYKLIHNHRSVADLVEVVDALFQRQID--FG 506 Query: 471 REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL 530 ++ + P+++ + + + + + P WLM + + T AQ A +IRD L Sbjct: 507 EQVQYDPIRAGTRPHPV-LIDQNQPNPHPLRWLMLKD-------KETEAQQVAWKIRDLL 558 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 G+ + + DI+VL R+ +V+ L L I V ++ SVF+ Sbjct: 559 NQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGLDKVQFELERLGI-RVNRPSKRSVFDC 617 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 AQ++ LL A+ P E ++ AL + + ++ + L + FD R+ Sbjct: 618 TIAQDVGALLTAIFHPYDEAKVKRALISRLFAMDLKQLLQLEQTAEGLSQFMTGFDTIRE 677 Query: 651 IWRKRGVMPMLRALMSARNIAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALV 708 +W +G + + ++ I +NL+A + ER + ++ H++E+L + + + L Sbjct: 678 LWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLY 737 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL-----PF-----IT 758 W + + P + RL S+ VQ++TIH+SKGLE+ +V+L PF Sbjct: 738 HWYLKQLQSPLDREWELERRLSSEAG-VQLMTIHQSKGLEFKIVFLLGADTPFRENNKTL 796 Query: 759 NFRVQEQAFYHDRHSFE----AVLDLNAAPESVDLAEAER-LAEDLRLLYVALTRSVWHC 813 NF Q+ + A+ D E+ ER LAE RL YVALTR+ Sbjct: 797 NFSTQDITVSESAQTLTQRVVAIADKTYLNETELKQHEERALAEQNRLWYVALTRA---- 852 Query: 814 SLGVAPLVRRRGDKKGDTDVHQ-SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 S V L++ DTD S L + EP C C D+I + Sbjct: 853 SHRVYALLQ-------DTDGKSVSGLAFWKNRAEPFQ----HRC----CTDEIILEQPPA 897 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRV---TSYSGLQQR-GHGIAQDLMPR----- 923 + +N + E+ A Q P + TS+S L Q H + DL+ Sbjct: 898 ARHLNQHINII---EIQA---QHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEA 951 Query: 924 -LDVDAAGVASVVEEPTLTP-----HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE-- 975 L D VE T P FPRG G FLH +FE +DF WV E Sbjct: 952 VLAEDELDQVISVETATAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQ--CSDEWVSEIR 1009 Query: 976 KLELGGFESQWEPVL---------------------TEWITAVLQAPLNETGVSLSQLSA 1014 + + S W+ +L EW+ +L PL + G L+QL Sbjct: 1010 RRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQ-GFRLNQLQP 1068 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 + E FYL +S+ ++A + + + F P L + L G IDLV+ Sbjct: 1069 EHYLSECPFYLALSDRVLA--MKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDGQ 1126 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHH 1134 RY++ DYKSN+LGE+ + Y+ +++A +M Y LQ LY +ALHRYL+ ++ +YD E H Sbjct: 1127 RYHIADYKSNYLGENLADYSVESIAQSMALASYWLQAGLYLVALHRYLKVKMQNYDIEQH 1186 Query: 1135 FGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 GG YL+LRG++ E +QG Y +P+ + +D + Sbjct: 1187 LGGATYLYLRGMNGE-AEQGYYYWQPSTEFVLRLDAILG 1224 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 23/186 (12%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 + G LIEASAGTGKT+T+++L +R+ L P +++ TFT AA AEL Sbjct: 15 IEFSGLHLIEASAGTGKTYTLSSLMVRIFL----EKYLPG-----QVIATTFTRAAAAEL 65 Query: 73 RGRIRS-------------NIHELRIACLRETTDNPLYERLLEEIDDK-AQAAQWLLLAE 118 + RIR+ ++ E I E + L + +L+ + A A + L L Sbjct: 66 KSRIRARLVETHRYLDAKRSLTEKEILLQAEQESDLLLQHILKHFATRIAYACERLKLVI 125 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 Q+DE V T+ F Q++L AFESG + Q+ +D Q D R P+ Sbjct: 126 DQLDELFVGTLDSFSQKLLREFAFESGKIERAQITDDAKTYSRQLIHDVLREWIQSQPQT 185 Query: 179 IAQVVF 184 + ++ Sbjct: 186 VIDALY 191 >UniRef50_D1R7X5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X5_9CHLA Length = 1167 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 316/1249 (25%), Positives = 544/1249 (43%), Gaps = 191/1249 (15%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + ++EASAGTGKTF+I + +RLLL P+T++E+LVVTFT AAT +L+ Sbjct: 11 IHHHHVLEASAGTGKTFSIENIIVRLLLE-------NPPVTIQEILVVTFTRAATHDLKV 63 Query: 75 RIRSNIHE-------LRIA---CLRETTD--NPLYERLLEEIDDKAQAAQWLLLAERQMD 122 RIR NI + L ++ C +E D + R EEI + + + L + D Sbjct: 64 RIRENIEKALSFLQGLLLSPHYCYQEAPDYLKAIQGRDPEEIKEIKKRLEHALF---EYD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR---YQACADFWRRHCYPL---P 176 +A +FTIH FC R L + FE G L L E ESL + + +F+R P P Sbjct: 121 QAQIFTIHSFCLRTLKTHFFE-GDLALHTLTEKESLSQAEILKVIRNFFRTELKPTIYGP 179 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 ++ + + + L + + + P+ +P +++ ++A ++ + Sbjct: 180 THFQLLLKQYEQSIEKLETALVKVMTQGIPLAPSPSFEEQYALFKNAMLLLKDRGFSS-- 237 Query: 237 RDAVGELDALIE-SSGI-DRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + + LI G+ DR+K ++ + ++ ++E S Q ES+ + Q FL Sbjct: 238 HSILTDFHTLIPLYKGLTDRQKRIKAETLSKVQLFASLFDQEEWSLQDYESVIE-DQLFL 296 Query: 295 ED-------RTKAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEIRETVAREKR 344 KA P + + LL EPL + + ++ + ++ Sbjct: 297 VKALDPSALTQKALSAPPPILILPNMLSLLKRHLEPLVNPLSTFAKLAYDCQKFLKHYQQ 356 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 + + FDD+L + AL+ + IR ++ A+IDEFQDTDP Q++IF ++ H+ Sbjct: 357 QEEKFRFDDLLHNMLQALQDPT---FTENIRNQYRAALIDEFQDTDPIQWKIFESLFLHE 413 Query: 405 PETALL-LIGDPKQAIYAFRGADIFTYMKARSEVHAHY--TLDTNWRSAPGMVNSVNKLF 461 + L L+GDPKQ+IYAFR ADI+TY+ A + Y +L TN+RS P +V +N LF Sbjct: 414 AYSGYLYLVGDPKQSIYAFRQADIYTYLSAAQAIGEDYRVSLTTNYRSHPSLVQGLNVLF 473 Query: 462 SQTDDAFMFREIP-------FIPVKSAGKN---------QALRFVFKGETQPAMKMWLME 505 +Q ++A F +P + V++A K ++ F+ + +P++ Sbjct: 474 AQ-ENAPDFIHLPKWQKTLNYQHVQAADKTFGKTLTDEMGSIHFILSDQEKPSL------ 526 Query: 506 GESCGVGDYQSTMAQ----VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 +S Y +AQ +C ++ D +VLV R Sbjct: 527 -DSLEEKVYFPFIAQEIQKLCHQNTFEY----------------------QDFAVLVADR 563 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW--LLQAVMTPERENTLRSALATS 619 +A ++ D L IPS L+ R++ A + W +L ++ + + L+ AL Sbjct: 564 YQAQRMSDYFKTLNIPS--LTQRNANLADSPAVQC-WQEILHGILHARQSSALKIALGGK 620 Query: 620 MMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM------SARNIAEN 673 + G N DI L D ++ + E R+ G + ALM + + E Sbjct: 621 IFGWNHEDILRLE-DPFFYEKTLAEIYFLRKKLLSEGFIAFYDALMHHQLFQDSHTLIEK 679 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESE-HALVRWLSQHILEPDSNASSQQMRLESD 732 +L G L ++ I+ELL + + L+ +L + + ++ ++++ Sbjct: 680 ILHQESGADFLDELCQIAELLIQKQNETHCPPEGLIAFLDEFPILKLNDDERLYKQVDTH 739 Query: 733 KHLVQIVTIHKSKGLEYPLVWL-----------PFITNFRVQEQAFYHDRHSFEAVLDLN 781 + VQI+++H SKGLE+ +V++ P I + Q+ + V DL Sbjct: 740 RKAVQILSLHSSKGLEFEIVFVLGLTKKNQAPSPLIPQSQEGSQSI------LQMVYDLQ 793 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVW------------HCSLGVAPLVRRRGDKKG 829 P +D + E AE +R LYVA TR+ + + G A + K G Sbjct: 794 D-PAYIDYCQ-ELDAEKMRQLYVAFTRAKYRLYVAALSPYEKQTAYGCASPIELFLAKLG 851 Query: 830 DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP-WQVNDVSTAEL 888 +L ++ L + I+AL + T ++ P +++N + L Sbjct: 852 QPSC---TYAQLYERIHANSTESLISFIDALDNSISITYTIESQVTPPCYEMNTTPSPIL 908 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ--DLMPRLDVDAAGVASVVEEPTLTPHQFP 946 + G+ ++S+S + ++ I P DA+ T H P Sbjct: 909 LPPPTIHISGEMLAISSFSQISKQMDQITPVWTESPPHHFDAS---------TKNLHTLP 959 Query: 947 RGASPGTFLHSLFEDLDFTQPVDP-------NWVREKLELGGFESQWEPVLTEWITAVLQ 999 G G LH + E F + D +W+ ++ F+ W+ VL E + L+ Sbjct: 960 AGNITGLLLHEILEKFPFEKANDMQNPSEMRSWITPYVQNTEFQD-WDQVLAEMLFNTLK 1018 Query: 1000 APLNETGVSLSQLSARNKQV--EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 PL + + + ++ E+EF P + L LD I + Sbjct: 1019 TPLPFKDATFALQDVQETKIFKEVEFLYPCEKGL----LDLHIPE--------------- 1059 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 G LKG IDL+F H G++Y++D+KSNWLG + AY+ ++ +M H Y LQ +Y + Sbjct: 1060 --GFLKGVIDLMFEHAGKFYMIDWKSNWLGPNLQAYSTTSLQQSMHQHHYHLQSAIYVES 1117 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIA 1166 L RYL+ +D++ +FGG+ YLFLRG+D E Q + P + Sbjct: 1118 LKRYLK-LFNQFDFKANFGGIYYLFLRGLDIEEGQLFGFYALPEGKFLC 1165 >UniRef50_Q3AX66 DNA helicase/exodeoxyribonuclease V, beta subunit n=4 Tax=Synechococcus RepID=Q3AX66_SYNS9 Length = 1208 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 366/1276 (28%), Positives = 543/1276 (42%), Gaps = 241/1276 (18%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 +AE D PL+ G RL+EASAGTGKTF +A L LRL+ AA+P +E LLVV Sbjct: 1 MAERFDANTYPLKPGIRLLEASAGTGKTFALAHLTLRLIT----EAAYP----LEALLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW--------- 113 T+TEAA ELR RI + + + E +N ++ D AA W Sbjct: 53 TYTEAAAEELRSRIGQRLQQALVGL--EQLENEMFP----SAPDPVMAAWWEQCTASADR 106 Query: 114 ------LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF 167 LL+A Q+D A + TIHGFC+R L A ++G E QL D + L+ + Sbjct: 107 RIRIRRLLVALEQLDRADIATIHGFCRRSLRRLALDNGAAIEPQLESDAAALQAEVVQYL 166 Query: 168 WRRHCYPLPREIAQVVFETWKGPQ----ALLR---DINRYLQGEAPVIKAPPPDDETLA- 219 W++ LP E Q + + PQ AL R D N L G++ + P + L Sbjct: 167 WQQELLTLPDEQLQGLRQRGLSPQTFGAALARLDGDPNPRLAGDSTSVDRQSPLRDQLPC 226 Query: 220 --------------SRHAQIVARIDTVKQQWRD-AVGELDALIESSGIDR-----RKFNR 259 S HA + + QW+ G DR + Sbjct: 227 WIESLWHAFQSHWESDHAALESGFRAAAAQWKSQGCGSTSPYSAKPRTDRCAVINQWIAI 286 Query: 260 SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE 319 N + I++ E+ Y P S + +++ ED L AI L E Sbjct: 287 QNGVPSLAAIAS-VEKPLKEYFHPGSWCRMARKCGEDEPSLVASA----LQSAIGALWDE 341 Query: 320 PLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV-LAAAIRTRF 378 PL + V L E + + RRG + F +L+ +D G+V A ++ R+ Sbjct: 342 PL---ERVWRYLLERGLEELRERRGRRGAITFAGLLAAMDPG----DGQVDWLAPLQERY 394 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 M+DEFQDTDP Q+R+ RR + + LLL+GDPKQAIY FRG D+ TY++AR +V Sbjct: 395 RAVMVDEFQDTDPVQWRLLRRAFGDRIHHLLLLVGDPKQAIYRFRGGDLGTYLEARQQVD 454 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 L N+R+ +++ +N L + M R IP A + QA+ V Sbjct: 455 RIDHLLDNFRATASLMDGLNTLMAPG----MPRSHLEIP---AVRAQAVDQVSPTTAALQ 507 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 + ++ + + + Q AA + + +L D P SD+ VLV Sbjct: 508 LLELELDTPASRTA-LEQQLPQHLAAVVFE----------ILEGPDQPDP---SDLCVLV 553 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 Q+A +R AL IPS ++ D V E+ A + LL A+ P + LR +++ Sbjct: 554 SRHQQATDLRRALGAAGIPSRLVTQGD-VLESEAALVVQRLLDALADPGDDRCLRLLVSS 612 Query: 619 SMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 +M + +E + N E D + E+ + + K G+M L L+ + A+ L+ Sbjct: 613 PLMNWS---LEAMEN-EGGLDQLAEQLRLWERALPKLGLMGCLAQLLEGQRTAD--LSER 666 Query: 679 GGERRLTDILHISELLQEAGTQ--LESEHALVRWLSQHILEPDSNA-SSQQMRLESDKHL 735 G R L D+ + L+QEA + L+S A WL + L P + ++Q + Sbjct: 667 G--RMLGDLQQVGRLVQEAMHRQGLDSATA-ANWLRRERLHPTTPVPEARQPHSDQADQA 723 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY----HDRHSFEAV-----LDLNAAPES 786 V +VT+H+SKGLEYP+V P++ QE D F A+ AA ++ Sbjct: 724 VAVVTVHRSKGLEYPVVICPYLWQAPRQESGPLWRETGDGRWFIAIDSHWGKGHRAAQQA 783 Query: 787 VD--LAEAERLAEDLRLLYVALTRS------VWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 D +AEAERLA YVA+TR+ VW VR G Sbjct: 784 TDDAMAEAERLA------YVAMTRARSQLMVVW---------VRSTG------------- 815 Query: 839 GRLLQKGEPQ-----DAAGLRTCIEALCDDDIAWQTAQTG-------------DNQPWQV 880 Q+G P A + ++ DD + ++ G +Q W+ Sbjct: 816 ----QEGAPLPCWLFGADAIHDSVDQFNDDRLDLALSERGVSLLRRVLPDPLLPSQRWR- 870 Query: 881 NDVSTAELNAKTLQRLPG---DNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 S L PG +W SYS I+ + P + EE Sbjct: 871 ---SLPSEQPLGLGETPGRIDRSWGRASYSAW------ISAPVDPVVHEQGRDPDPGAEE 921 Query: 938 PTLT-----PHQFP-----RGASPGTFLHSLFEDLDF--TQPVDPNW--------VREKL 977 +LT P Q P RGA G LH + E + + DP+ + +L Sbjct: 922 CSLTGPELWPEQGPLADFPRGAVAGDCLHRILEQIPYQAADADDPSLLDSLRAAVIDSEL 981 Query: 978 ELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 G + + ++ E + VL+ PL + LSQL + + E+ F LP+ + Sbjct: 982 RRAGLDCNLQSMVMEGLGYVLKTPLGGPLEQLQLSQLGLKQRIHELSFDLPVGH----VR 1037 Query: 1036 LDTLIRQFDPLSAGCPP-----------LEFMQV--RGMLKGFIDLVF--RHEGRYYLLD 1080 L++ F C P L + V RG L G IDLVF H+ R+++LD Sbjct: 1038 TKDLVQAFH-----CSPNARFGGRYIDHLATLGVNSRGFLTGSIDLVFCDPHQSRWWVLD 1092 Query: 1081 YKSNWLGEDSSA----------YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYD 1130 +KSNW+GE S Y Q AM M H Y LQ LY +ALHR+L R+ DY+ Sbjct: 1093 WKSNWIGERRSEGSPGRCGPRHYHQDAMQEQMIHHHYPLQAHLYLVALHRHLSWRLPDYN 1152 Query: 1131 YEHHFGGVIYLFLRGV 1146 E H GG +Y+FLRG+ Sbjct: 1153 PEQHLGGYVYVFLRGM 1168 >UniRef50_D0L8X3 Exodeoxyribonuclease V n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8X3_GORB4 Length = 1134 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 290/938 (30%), Positives = 414/938 (44%), Gaps = 129/938 (13%) Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 +I E R R R +DD+ + L + + GE IR+ F VA++DEFQDTDP Sbjct: 228 QIVEARKRTSRLRT---YDDLQTILHRIITDPDVGEAACRRIRSTFAVALVDEFQDTDPL 284 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPG 452 Q+ I RR +H L+L+GDPKQ+IY FRGA++ +Y+ A LDTN RS Sbjct: 285 QWDIVRRCFHGHRR--LVLVGDPKQSIYGFRGAEVLSYLSAVRSADTLRALDTNRRSDGD 342 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG 512 +V S+ L+ I PV +A L + + M+ S GV Sbjct: 343 LVASLWTLYGGA--TLGHPGIVVHPVGAAHAGSRLDGAVPMQVRAFMRTDFNRLNSLGVP 400 Query: 513 DYQSTMAQV---CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 A++ A I L AG ++++G RPV DI+VLVR + ++ Sbjct: 401 SAPDARARITTDVADHISSALSAGM---TIVVDGAR-RPVEPGDIAVLVRQNKTIEPLQT 456 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN----A 625 AL + +V S + VFET AQ LW+L+AV P R + +R A T ++G A Sbjct: 457 ALAARGVNAVIGSGVN-VFETSAAQHWLWVLRAVEQPSRPDRVRLAALTPLLGWTPERLA 515 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 + ET + A F Q++ + G M + LM+ N+A +LA GGER LT Sbjct: 516 VQAETGTAELGAG------FAALGQVFGECGFAAMAQRLMAQENVAARVLAMRGGERLLT 569 Query: 686 DILHISELLQEAGTQL-ESEHALVRWLSQHILEPD--SNASSQQMRLESDKHLVQIVTIH 742 D+L IS L + + E LV WL+ I + Q RLE D VQI+T+H Sbjct: 570 DLLQISALCNKQVVESGEGISGLVEWLADRIADSSRRQRHEDQSRRLERDTEAVQIMTVH 629 Query: 743 KSKGLEYPLVWLPF---ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE-----AER 794 SKGL++P+V++PF T + +HD +LD+ A P + AE Sbjct: 630 ASKGLQFPIVYVPFGWDGTWIDEEGDLTFHDDEGTR-LLDV-AGPGAPGRGTRRARYAEE 687 Query: 795 LA-EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR---LLQKG--EPQ 848 +A EDLRLLYVALTR+ AP +H+ GR L ++ +PQ Sbjct: 688 VAGEDLRLLYVALTRAQSQVVTWWAPTA-----NTPTGPLHRLIFGRQRALAERSGTDPQ 742 Query: 849 ------------DAAGLRTCIEALCDDDIAWQTAQTG-----DNQPWQVNDVSTAELNAK 891 D T + L + D + + G P + L+A Sbjct: 743 APWTVAKSVDVPDDVECVTVLRQLAERDSRIEVSPAGRLPTPPAGPAGDDPADLPVLSAA 802 Query: 892 TLQRLPGDNWRVTSYSG-LQQRGHG----------------IAQDLMPRLDVDAAGVASV 934 R WR TSYS + HG A D P ++ +V Sbjct: 803 AFDRRIDQQWRRTSYSAIIAGAAHGPSAVETGSERDGARLDTALDDEP-IEAPEPLAGNV 861 Query: 935 VE----EPTLTPHQFPR---GASPGTFLHSLFEDLDFTQP-----VDPNWVREKLELGGF 982 +E E T TP GA GT +H + E +D + P V R GG Sbjct: 862 IEDESGERTGTPSPMSGLSFGAGFGTLVHEVLEYVDTSAPDIRSHVAQLVARAAGVRGGT 921 Query: 983 ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL----------- 1031 VLT+ + VL PL L ++ R++ E++F LP+ + Sbjct: 922 VDV--NVLTDALVGVLTTPLGFG--DLWSIAPRDRLAELDFELPLGDDAASDETETGATV 977 Query: 1032 --IASQLDTLIRQFDPLSA------GCPPLEFMQVRGMLKGFIDLVFR-HEGRYYLLDYK 1082 IA +D + DPL G P ++RG L G ID V R +GRY ++DYK Sbjct: 978 AEIADLMDRHLGADDPLRPYAQVLRGVPA---ARLRGFLTGSIDSVLRVPDGRYVVVDYK 1034 Query: 1083 SNWL--GE-DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 +N L GE + AMA M Y LQ LY++ALHRYLR RIA Y EHH GGV Sbjct: 1035 TNRLRPGELMVEDFHSGAMATEMIHAHYPLQALLYSVALHRYLRWRIAGYTPEHHLGGVQ 1094 Query: 1140 YLFLRGV--DKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 Y F+RG+ P G++ +P + L+ + ++ AG+ Sbjct: 1095 YHFVRGMAGPSTPPGCGVFEWKPPSELVTAISDLLAGV 1132 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 19/165 (11%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 LP Q ++EASAGTGKT+ I +L R L + P + +L+VTF+ AATAEL Sbjct: 17 LPAQ-TTVLEASAGTGKTYAIVSLAARYL-----AEGVP----ISGMLLVTFSRAATAEL 66 Query: 73 RGRIRSNIHEL-----RIACLRETTDNPLYERLLE--EIDDKAQAAQWLLLAERQMDEAA 125 R R+R +H L A ++ D RLL +D A+ L+ A D + Sbjct: 67 RERMRERVHGLVGVLADPASAAQSADQ--LHRLLAAGTAEDVARRRAHLVRALSDFDAST 124 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 + T H FC RML F +++E+ L + D + R Sbjct: 125 IATTHTFCNRMLEALGFLGEREMVYRIVEEVDELTDEVALDLYLR 169 >UniRef50_UPI0001C3224E exodeoxyribonuclease V, beta subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3224E Length = 1132 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 283/951 (29%), Positives = 426/951 (44%), Gaps = 158/951 (16%) Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 R + R KR + FDD+L RL AL GE +AA + R+ +A++DEFQDTDP Q+ Sbjct: 220 RAELDRRKRAAALVTFDDLLLRLRDALEGPDGEAVAARLHRRYRIALVDEFQDTDPDQWA 279 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 I RR + T L+LIGDPKQA+Y+FRGAD+F Y+ A AH TL NWRS +++ Sbjct: 280 IMRRAFAAT-GTTLVLIGDPKQAVYSFRGADVFAYLDAARAADAHPTLRVNWRSDQRLLD 338 Query: 456 SVNKLFSQT---DDAFMFREI------PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 + + LF D ++R++ + A LR P ++ L G Sbjct: 339 AYDALFGAARLGHDEIVYRQVRAAAANRAPRLHGAPGAAPLRIRVVPRDAPTVR--LTSG 396 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA--RPVRASDISVLVRSRQEA 564 + ++ +A+ AA + L++G R E +G PV D++VLVR +A Sbjct: 397 GTASPASARAYVARDLAADVVALLESGARIETRDSDGRAVGHTPVGPGDVAVLVRRNVQA 456 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 +++ AL +P+V ++ SVF + A++ L LLQA+ PE R+A T+ +G + Sbjct: 457 REIKTALEAAGVPAV-VAGGGSVFASESARDWLVLLQALERPELLARARAAALTAFLGWS 515 Query: 625 ALDI--------ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 A+ + + L HAW V+ R+ GV + + S+ ++ LL Sbjct: 516 AVRVAAAAEDAWDELQQRLHAWAGVM----------RRHGVAALTETITSSERVSVRLLE 565 Query: 677 TAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHI--LEPDSNASSQQMRLESDK 733 GGERRLTD+ H+ ELL A + AL WL + I + D++A + RLESD Sbjct: 566 IVGGERRLTDLRHVGELLHAASADEQLGITALAAWLRRRIEAGDRDADADDRARRLESDA 625 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITN-FRVQEQ---AFYHDRHSFEAVLDLNAAPESVDL 789 VQ++T+H+SKGLE+P+V+ P++ + + + A +HD N ++D+ Sbjct: 626 EAVQVLTVHRSKGLEFPIVYCPYLWDPIWIPNEPLPATFHD--------AANGGARTIDV 677 Query: 790 A---------------EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 A + E+L E+LRL YVALTR+ + A R G Sbjct: 678 ALDEDNQDYRRHQRQDKEEQLGEELRLAYVALTRARHQAVVWWAGSWSSRNSALGRLVFE 737 Query: 835 QSALGRLLQKGE--PQDAAGL-------------RTCIEALCDDDIAWQTAQTGDNQPWQ 879 + A G + G P D A A D + W Q +PW Sbjct: 738 RDADGNVPATGSFTPTDEAATDRFRQLAAAAAGAIAVERATVVDGVRWSPPQ----EPWT 793 Query: 880 VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH--GIAQDLMPRLDVDAAGVASVVEE 937 + L A T R WR TS++ + +A +L +A G VE Sbjct: 794 L-------LEAATFDRALDQRWRRTSFTTITAGAFEARVASELE-----EAPGADDAVEI 841 Query: 938 PTLTP-----------------HQFPRGASPGTFLHSLFEDLDF---------TQPVDPN 971 P L P + P GA GTF+HS+ E DF T + Sbjct: 842 PLLLPSPSGDDRATASAAVSLLSELPAGARIGTFVHSVLEATDFAASDLDGELTAHIGAA 901 Query: 972 WVREKLELGGFESQWEP-VLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLP-- 1026 R ++++G +P L + A ++ PL E G L L + EM F LP Sbjct: 902 LDRRRIDVG------DPAALAGGLRAAIETPLGELAGGWRLRDLPRSARLDEMGFELPLV 955 Query: 1027 --------ISEPLIASQLDTLIRQFDPLSAGCP----PLEFMQVRGMLKGFIDLVFRH-E 1073 ++ +A+ L + DPL+ P +RG L G IDLV R E Sbjct: 956 GGDAPTGELTLSAVAAVLRAHVAPDDPLAGYAERLSDPALRSHLRGYLAGAIDLVARRAE 1015 Query: 1074 G-RYYLLDYKSNWLGEDSSA-----YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 G Y ++DYK+N L A Y A+A MQ Y LQ LY +ALHRYLR R+ Sbjct: 1016 GVPYAIVDYKTNRLAAAGEALTPWHYRPAALAIEMQRSHYVLQALLYAVALHRYLRWRVE 1075 Query: 1128 DYDYEHHFGGVIYLFLRGVDK------EHPQQGIYTTRPNAGLIALMDEMF 1172 D+ + ++Y FLRG+ + G++ RP GL+ + ++F Sbjct: 1076 DHHPDRDRPLIVYAFLRGMAGSATPVLDGAPCGVFAWRPPEGLVPALSDVF 1126 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 32/210 (15%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 +DVAE LP +G ++EASAGTGKT+ IAAL R + + +++LL+ Sbjct: 4 ADVAEFDLCGPLP-EGVTVLEASAGTGKTYAIAALATRYVA---------EGIPLDQLLI 53 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNP-------LYERLLEEIDDKAQAA--- 111 VTFT AT ELR R+R R+A RE D +Y+ ++ + A Sbjct: 54 VTFTRMATGELRDRVRH-----RLASTREALDAIAAGAAPGVYDEVVRLLASGTSAEVAR 108 Query: 112 --QWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 ++ A + D A + TIH FCQ L F + + + + ED L + D + Sbjct: 109 RRDRIVRALAEFDAATITTIHSFCQEALGELGFAADLDRDHRFQEDVRDLAEEVVDDLYV 168 Query: 170 RHCYPLP-----REIAQVVFETWKGPQALL 194 R P E +V + P A+L Sbjct: 169 RGFLTRPPHFRRAEAGRVALKAIDNPSAVL 198 >UniRef50_C0DS65 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DS65_EIKCO Length = 1241 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 272/867 (31%), Positives = 413/867 (47%), Gaps = 92/867 (10%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70 L LP QG L+EASAGTGKT++IAAL+ RL++ G + E +LVVTFTEAATA Sbjct: 9 LPLPPQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAP--------ENILVVTFTEAATA 60 Query: 71 ELRGRIRSNIHELRIACLR--ETTDNPLYERLLEEIDDKAQAAQWLL---LAERQMDEAA 125 EL+ R+R+ + E+ +A L+ ET + + LL E K + ++ +L A D AA Sbjct: 61 ELKNRLRARLGEV-LAALQSGETPADEFLQHLLAEALAKQERSKLILQLQAALSGFDTAA 119 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 ++TIHGFC R+L AF G+ FE + ++ R A DFWR H P+ A++ Sbjct: 120 IYTIHGFCLRVLGDYAFLCGVPFELETGPVDTAARLVAAQDFWREHVADHPQN-ARIAAR 178 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 P ++L + + L+ + P +R QI + Q+ + V E++A Sbjct: 179 FGITPASVLAEFSGSLKRAFLDYRLP-------ENRLTQIQKGLHAAWQKLQRNVEEIEA 231 Query: 246 LIE--SSGIDRRKFNRSNQAKWIDKISAWAEE-ETNSYQLPESLEKFSQRFLEDRTKAGG 302 + + FN S + + A E E P+ L F + L +R + Sbjct: 232 VYRRIKPQLHGGTFNASIDTLFTELRQAAQEGLEQPVLSKPDRLLCFEENALRNRIR--- 288 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEI-------------------RETVAREK 343 ++ E D +PL+ V R LAEI + +A +K Sbjct: 289 ---KNQHIEEADIAALQPLA----VFGRRLAEIDDAEQEAAIRLKLECLGYLKTRLAEDK 341 Query: 344 RRRGELGFDDMLSRLDSALRS----ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 RR +DD+L + +AL + E E LA A+ ++ VA+IDEFQDTDP QY IF Sbjct: 342 RRSSRRDYDDLLLDVHAALSNPEHPEQAEALAQALAAKWRVALIDEFQDTDPLQYAIFHT 401 Query: 400 IWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH--YTLDTNWRSAPGMVNSV 457 + Q + L+GDPKQAIY FRGADI Y+ A ++ YTL TN+RS +VN + Sbjct: 402 AFIRQG-VPVFLVGDPKQAIYGFRGADIHAYLAAAADTAPEQSYTLHTNYRSHRDLVNGI 460 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM----EGESCGVGD 513 LF+ F+ +I + V++A +A + W+ +G+ Sbjct: 461 GHLFAARSRPFVLPQIAYPAVQAA---RAESLLSPAPEAAVAVRWINPSAEDGKLPNKDF 517 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR---PVRASDISVLVRSRQEAAQVRDA 570 + A CA +I L G +L++ G D++ P+ I+VLVR +E V A Sbjct: 518 LRELSANYCAREIAARLNQAFSG-SLMIEGKDSKKNKPLHPGQIAVLVRKHEEGEMVARA 576 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L + SV L + SVF+T EA+ + LL + P++ LR L G A D+ Sbjct: 577 LKRRGVRSVLLQQQ-SVFDTPEAEALHALLLFWLAPQQTEYLRFVLGGIFYGYTAQDLAE 635 Query: 631 LNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHI 690 LN +E+ + + + W++ G+ L + ++LL T ER T+ + Sbjct: 636 LNGNENRLAEWITLAETAAEAWQQHGIYTALTRFARQSGLEQHLLHTRN-ERSFTNFRQL 694 Query: 691 SELLQEAGTQLESEHALVRWLSQHIL--------------EPDSNASSQQMRLESDKHLV 736 +E+L A + S AL +WL + D Q+RLESD+ LV Sbjct: 695 AEILALAAAECASPVALAQWLEMRLKSSKKNKKSKENKNDREDKGNKEYQLRLESDEDLV 754 Query: 737 QIVTIHKSKGLEYPLVWLPFI--TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE--A 792 +IVT+H +KGLEYPLV+ PF+ T+ ++ + + + +L A + D + A Sbjct: 755 KIVTMHAAKGLEYPLVFCPFVWDTSDKLVQDWNIISQSNGRNLLLAKAQLDEEDERQLFA 814 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAP 819 E L E LRLLYVALTR+ L AP Sbjct: 815 EDLGERLRLLYVALTRAREQLVLYAAP 841 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 22/225 (9%) Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDPNWVR--EKLELGGFESQ-WEPVLTEWITAVLQAP 1001 FP G PG LHS+ E DF + L+ GFE++ W P + E + AV + P Sbjct: 1014 FPAGTQPGICLHSILEQTDFVHLAAEQAASYADILDKHGFEAEAWLPAVLEMVEAVRRVP 1073 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF--------DPLSAGCPPL 1053 L E + L+ + A ++ EM F L + + L L R F + +A P L Sbjct: 1074 LAEN-MQLADIPADSRVAEMGFVLHLHD----FGLKRLRRWFARSDIGLPENAAAHLPQL 1128 Query: 1054 EFMQVRGMLKGFIDLVFR-HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 +F V G L GFIDL+ GR ++DYKSN LG + Y + AM+AA+ H Y LQ Sbjct: 1129 DFHAVTGFLNGFIDLIAAGKNGRVCVIDYKSNHLGSRLADYGRAAMSAAVSEHHYYLQAL 1188 Query: 1113 LYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYT 1157 +Y +A RYL+ R A +Y H V YLF+RG++ H Q+G++ Sbjct: 1189 IYAVATARYLKQRRALPEYIH----VRYLFVRGLNP-HGQEGLWC 1228 >UniRef50_A9BB02 Possible UvrD/REP helicase subunit B n=2 Tax=Prochlorococcus marinus RepID=A9BB02_PROM4 Length = 1265 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 322/1313 (24%), Positives = 575/1313 (43%), Gaps = 203/1313 (15%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + +P PL+ G RLIEASAGTGKTF++A L LRLL + ++ E+LVV Sbjct: 3 IESEFNPNTFPLEPGVRLIEASAGTGKTFSLAHLVLRLLT--------EKQHSINEILVV 54 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYE-------RLLEE-----IDDKAQA 110 +FT A+ AE++ RI + R+ + +NP E ++L+E I+D + Sbjct: 55 SFTRASAAEIKARITN-----RLIFALKGLENPSKEYKNKHIDQVLDEWLKKFINDIQRR 109 Query: 111 AQW---LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACA 165 W LL A +D+A + TIHGFC+R L + ESG E I + + L + Sbjct: 110 MHWVNHLLDALTNIDQADITTIHGFCRRTLQRDVIESGSAIEPHPIAEGEIKKLVNEIAH 169 Query: 166 DFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR---- 221 ++W ++ L + + + + +++ + + + P +K E S+ Sbjct: 170 EYWIQNVLSLAPQHLKGIKQAGINAESIAKKV--LAIDQDPSLKLSIKRTEVDVSKPLKE 227 Query: 222 --HAQIVARIDTVKQQWRDAVGELDALI--------ESSGIDRRKFN---RSNQ----AK 264 + + ++ W + +LD + E +D + ++ R N+ + Sbjct: 228 QFNTNLKTCWESFISSWEEYGSDLDNELKKIASSYREIGIVDTKPYSPNPRKNRYQELNE 287 Query: 265 WID--KISAWAEEETNSYQLPESLEKF-SQRFLED------------RTKAGGETPRHP- 308 WI+ K S + +++ P S E +Q+ L+D R + + P Sbjct: 288 WINIFKCSQYGSKKSK----PISYEDIRTQKLLKDYFHPLKLAEVERRNQLDYSSLIRPK 343 Query: 309 LFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD---SALRSE 365 L +AI L +P +LV A+ + E++ ++ + G + F D L LD + Sbjct: 344 LQQAIADLFDKPA---ELVFIHAVGSVLESLRLKRLKSGFISFSDQLKALDPESNCSVKN 400 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA 425 + L +R R+ V +IDEFQDTDP Q+RIF ++ + L+++GDPKQAIY FRG Sbjct: 401 NFPKLQERLRQRYKVILIDEFQDTDPLQWRIFNTVFGKSSKHLLVMVGDPKQAIYKFRGG 460 Query: 426 DIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ 485 D+ TY+ AR E +L TN+R++ +++S+N++ S + + +KS K + Sbjct: 461 DLNTYLLARKEADRVDSLLTNFRASAPLLSSLNQMMSC---GLKYSALNVPSLKSGSKRK 517 Query: 486 ALRFVFKGETQPAMKMWLMEGE---SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 L + + + E + V ++ + Q+ + + + L+N Sbjct: 518 LLPLSTESHSLEILTPKPSSSEKVLNSSVPPLRNKVEQLIPNIVTNAILE-------LIN 570 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 D+ + +DI +LV +A +R +L+ IPS L N+ +FE+ A + + Sbjct: 571 KPDSE-LHPNDICILVNRHSQANDIRLSLSKSGIPS-RLINKGDIFESEAATILQRFIDC 628 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV--VVEEFDGYRQIWRKRGVMPM 660 + +P + +R + +M DI L + E ++ ++ +F + + G++ Sbjct: 629 LSSPNSIDNIRLLACSPLM---QWDINKLKDAEETKEIDDLIIQFTNWGNELNELGLIGC 685 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQH---IL 716 L + ++NIA L+ G L D+ ++L+QEA Q + RWL Q +L Sbjct: 686 LSNFLESKNIAS--LSRKGT--LLGDLFQCAQLVQEAVHNQGLNARGAARWLKQQRTKLL 741 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA-FYHDRHSFE 775 +P +Q + + + ++TIH+SKGLE+ +V P++ + + D + Sbjct: 742 DP--TPEDRQPNSDIAEEAINVITIHRSKGLEFKVVICPYLWQSPSSPRGPLWRDDVKKQ 799 Query: 776 AVLDLNA----APESVDLAEAERLAEDLRLLYVALTRS------VWHCSLGVAPLVRRRG 825 ++ +N + +D A E E RL YVA+TR+ +W + Sbjct: 800 WLISINPGWGNGNQIIDSAIVEANQEAERLAYVAMTRAQDKLIVIWIAA----------- 848 Query: 826 DKKGDTDVHQSALG--RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW--QVN 881 K+ + + G L K E + T ++A + +I+ + G + + + + Sbjct: 849 SKQENNPLKFFLFGPNSLDAKAEDLTFEKMNTWVKA-NNSNISIRQVDIGKVKGYWDKFD 907 Query: 882 DVSTAELNAKTLQRLPGDNWRVTSYSG-------LQQR---------GHGIAQDLMPRLD 925 D S +L T +R +W SYS L +R G + Q+++ L+ Sbjct: 908 DKSILKL-GPTPKRKLDKSWGRHSYSSWISSTYRLNERPLNPDAIDEGKDLEQEVV-NLE 965 Query: 926 VDAAGVASVVEEPTLTPH---------QFPRGASPGTFLHSLFEDLDFTQPVDPN----W 972 V + + L+ + FPRG G LH + E ++F P+ Sbjct: 966 NRNPDVTTFYQRENLSDYNWSKQGPLQNFPRGPIAGECLHKILERINFRHPISCKDSELV 1025 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPIS-- 1028 + ++L G + + + + VL + ++ + + RNK E+ F L +S Sbjct: 1026 IVDELRRSGIDEKHRVDVQVALERVLNIKMGKSLGNLRFKDIDNRNKINELGFDLCLSKN 1085 Query: 1029 -EPLIASQLDTLI-----RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG-----RYY 1077 +P+ S L+ + R+F + + RG L G IDLVF + R++ Sbjct: 1086 RQPIKTSDLEKTLHSCTKRRFGKAYSDQIKELNIYSRGFLTGSIDLVFNDQNEFSQKRWW 1145 Query: 1078 LLDYKSNWLGEDSSA----------YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 + D+KSNWL + Y+ M M H Y LQ LY +ALHR+L+ R+ Sbjct: 1146 VADWKSNWLANHPTNNLTTYCGPAHYSASRMEEEMMHHHYLLQANLYLVALHRFLKWRLP 1205 Query: 1128 DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 Y H GG +Y+FLRG+ P Q + P +EM G+ +EEA Sbjct: 1206 GYSPNKHLGGYVYVFLRGI----PSQDEINSIPRNS-----NEM-PGLIIEEA 1248 >UniRef50_Q6A850 Exodeoxyribonuclease V beta chain n=3 Tax=Propionibacterium acnes RepID=Q6A850_PROAC Length = 1078 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 258/903 (28%), Positives = 403/903 (44%), Gaps = 94/903 (10%) Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 +RE V R + R FDD++ L ALR G + A + RF + M+DEFQDTDP Sbjct: 207 SVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLARATLAHRFGLVMVDEFQDTDPL 266 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPG 452 Q+ I RR +H + L LIGDPKQ+IYAFRGADI Y A LD N+R+ Sbjct: 267 QWEILRRAFHGH--SNLWLIGDPKQSIYAFRGADIHAYQDAAQSASHVLHLDVNYRTDKP 324 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE-----TQPAMKMWLMEGE 507 +V +VN LFS +A + +I V + + ++ +QP L Sbjct: 325 IVEAVNTLFS---NAQLGHDISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQA-- 379 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 G +T Q + + + G ++ +GD RP+R +DI++LVR+R+ A++ Sbjct: 380 PAGAQLNTATSDQFVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRRGAEL 439 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENT---LRSALATS-MMGL 623 AL+ P+V+ S V+ + A++++ LL+A+ ENT LR+ L S ++G Sbjct: 440 ATALSQAHQPAVF-SGASPVWSSQAAEDLITLLEAL-----ENTDERLRTRLCLSDLIGA 493 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 D+ +D + + + W GV + A + + L++ AGGER Sbjct: 494 TPADLAA--SDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSMAGGERY 551 Query: 684 LTDILHISELLQEAGTQLE-SEHALVRWL-SQHILEPDSNASSQQMRLESDKHLVQIVTI 741 +TD+ +++ A + + A W+ Q L D + RL+SD+ V I+TI Sbjct: 552 VTDLRQVAQKAHIAACEGRLTATATAAWIREQQQLAGDD----EPRRLDSDQQAVIIMTI 607 Query: 742 HKSKGLEYPLVWLPFITNFRVQEQAF-----YHDRHSFEAVLDLNAAPESVDLA----EA 792 H++KGL +P+V LP ITN +Q+ +HD VLD+++ +A E Sbjct: 608 HEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQ--RRVLDISSQGTDRSIAIESHEE 665 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG 852 + E+LRLLYVALTR+ L +P R SA RL++ G Sbjct: 666 DERGENLRLLYVALTRARSAVRLWWSPCPLRH---------RWSAFQRLVEMDRTTGELG 716 Query: 853 LRTCIEALCDDDIAW------QTAQTGDNQPWQVNDVST---AELNAKTLQRLPGDNWRV 903 + + + W T NQ VS A + +TL R + Sbjct: 717 --SGVAGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFAR 774 Query: 904 TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD 963 TSYSGL H + M +D V++ P G S GT +H++ E +D Sbjct: 775 TSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYID 834 Query: 964 FTQPVD-----PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--TGVSLSQLSARN 1016 T +D + R L + L + VL + L G++L+ S + Sbjct: 835 -TAAIDLSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPAD 893 Query: 1017 KQVEMEFYLPISEPLIASQLD---------TLIRQFDPLSAGCPPLEFM-----QVRGML 1062 + EM F L +++ ++ + +L+ DP+S L + +RG L Sbjct: 894 RLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFL 953 Query: 1063 KGFIDLVFRH-EGRYYLLDYKSNWLGE----DSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 G ID V R +GR+ ++DYK+N + Y M M + Y LQ LY+ A Sbjct: 954 TGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAA 1013 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGV-DKEHPQ----QGIYTTRPNAGLIALMDEMF 1172 LHR+L + YD H G + YLF+RG+ D+ P G++T P LI + E Sbjct: 1014 LHRFLASSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERL 1073 Query: 1173 AGM 1175 G+ Sbjct: 1074 GGL 1076 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 20/127 (15%) Query: 16 QGERLIEASAGTGKTFTIAALYLR-LLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 QG L+ ASAGTGKT+TI+A+ + + GL + ++ LL+VTF +A ELRG Sbjct: 15 QGTVLLAASAGTGKTWTISAVCAKAIATGL---------VHMKNLLLVTFNRSAARELRG 65 Query: 75 RIRSNIHELR--IACLRETTDNPLYERLLEEIDDKAQAAQWLLL--AERQMDEAAVFTIH 130 R+ + R +A RE +D P L+ + A + + A D A + T H Sbjct: 66 RVYERLVNTRLLLAGAREPSD-PCDWSLI-----RCGRAGFTRVESALDNFDRAVITTTH 119 Query: 131 GFCQRML 137 F RML Sbjct: 120 EFASRML 126 >UniRef50_A7BUG4 Exodeoxyribonuclease V beta subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BUG4_9GAMM Length = 455 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/400 (35%), Positives = 210/400 (52%), Gaps = 36/400 (9%) Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A R DEA++FTIH FC++ML NAFESG+LF+ +L+ D+S L + DFWR++ Y Sbjct: 37 ALRGFDEASIFTIHSFCRQMLQDNAFESGLLFDTELVSDQSHLLREIVEDFWRQYFYSST 96 Query: 177 REIAQVVFET-WKGPQALLRDINRYLQGEAPVIKAPPPDDETLA-SRHAQIVARIDTVKQ 234 + E + P +LL +N P + P L ++ ++Q Sbjct: 97 QLFITYALENGYSNPNSLLNTLNYGQYVGQPFLNIIPKSQSALTEAKELAFYTAFSEIQQ 156 Query: 235 QWRDAVGEL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRF 293 W+ E+ D L+ ++R K+ + + +W + + S LP+ KF+ Sbjct: 157 AWQSQAPEVEDLLLNDGNLNRNKYRKKSIPQWCKAVDTFLNAPVMSINLPDKFIKFTNHE 216 Query: 294 LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD------LVITRALAEIRE-TVAREKRRR 346 + TK G +P+HP FE D+LL ++ D L + L +I E ++AR+K + Sbjct: 217 IALGTKKGKLSPQHPFFEHSDKLLNGQTALADSFEKHLLTLKIQLFDIAEQSLARKKHQH 276 Query: 347 GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--- 403 FDD+L L AL+ ++G+ LA IR +F A+IDEFQDTDP QY IFRRI+ + Sbjct: 277 RIQSFDDLLINLYKALKGKNGDNLARLIRNKFHAALIDEFQDTDPVQYEIFRRIYGNITT 336 Query: 404 -------------------QPETA----LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 +P ++ L LIGDPKQAIY+FRGADIFTYM A + Sbjct: 337 PTNLDPLPKEEGIPSGKPDEPTSSQAQILFLIGDPKQAIYSFRGADIFTYMTAYRDAQNR 396 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 YTL TNWRS ++ VN+LF QT F+F +I F PV++ Sbjct: 397 YTLATNWRSEADLIGGVNQLFMQTKHPFLFEDISFQPVQA 436 >UniRef50_A5WES0 DNA helicase/exodeoxyribonuclease V, beta subunit n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WES0_PSYWF Length = 1496 Score = 242 bits (617), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 263/990 (26%), Positives = 414/990 (41%), Gaps = 215/990 (21%) Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW---- 401 RGE F + RL+ AL GE LA IR +PVA+IDE QD + +Q + I+ Sbjct: 494 RGETTFSLQMVRLNQALTGRQGEKLARYIRHHYPVALIDESQDINGEQAIMIESIYLPSH 553 Query: 402 ---HHQPETA---------------LLLIGDPKQAIYAFRGADI--FTYMKARSEVHAHY 441 H +T LLL+GDPKQAIY FRG D+ + YMKA+ + + + Sbjct: 554 KRQHSGSQTGDEGKQSTNTKSNQEFLLLVGDPKQAIYGFRGGDVANYNYMKAQFDKSSLW 613 Query: 442 TLDTNWRSAPGMVNSVNKLF-------SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 TLD N RS G+++++N F S+ A + I + + +A + L + + Sbjct: 614 TLDINRRSNKGVIDALNCWFGMPTPTTSENKFAELGSHIYYQHITAAKLEKQLSWFNDLD 673 Query: 495 T-QPAMKMWLMEGESCGVGDYQSTMA-----------------QVCAAQIRDWLQAGQRG 536 + Q A E V D S +V A I L +GQ Sbjct: 674 SYQAATSSSAATTEVDLVTDVLSAKPVSVLHLPYDKELEYDEHEVTARHIAALLNSGQT- 732 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 + G +P++ SDI VL R++++ +V D L L + ++ S+ S+FET+ A+++ Sbjct: 733 ----LKG---KPIQPSDIGVLARAKKDLKRVEDELVKLNVATLTTSDV-SIFETIMAEDV 784 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND---------------------- 634 LL A++ P R + + L + + GL+ +++ + D Sbjct: 785 AALLSAMLYPYRHDMINRVLTSHLYGLSIKEVKAMMTDHESGVAQSDEAAVKVAAHTNSA 844 Query: 635 ----------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA-----RNIAENLLATAG 679 + ++ V+ Q W+ G++ + L+ + + + L A Sbjct: 845 TNGSIQGDTGKKSYQDVISYLKEAAQRWQNFGILSAMHYLLDKSPVQPQGVWQALAAHPE 904 Query: 680 GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 G+R + D+ H+ ++L + G + EH L+ W Q+I ++ ++Q L ++ VQ++ Sbjct: 905 GDRHIMDLRHVMDILAQYGMGM-GEHELLAWFRQNIDAAPNSDWAKQYPLPTESG-VQLM 962 Query: 740 TIHKSKGLEYPLVWL--------------------------PFITNFRVQEQAFYHDRHS 773 TIHKSKGLE+P+V+ P RVQ + R Sbjct: 963 TIHKSKGLEFPIVYALGMGSASRKSGNKEDYGLYLYNAQQAPNALVQRVQGSSGNQRR-- 1020 Query: 774 FEAVLDLNAAP-ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG--- 829 F AV D P D+ E E RL YVA TR S + ++R DK G Sbjct: 1021 FSAVKDSATTPGYYTDIETQEDFEEFRRLGYVAFTR----ASELLYVVLRDPKDKTGFDL 1076 Query: 830 -------DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVND 882 D+ + L L KG G + E D+D +T D+ + Sbjct: 1077 KPVFYWFDSSEPKFELPDRL-KGSIGMVRGQKVH-EFYQDNDTKAKTHHLTDSTQATLTQ 1134 Query: 883 VSTAELNAKTLQRLPGDN----WRVTSYSGLQQRGHGIAQ---------DLMPRLDVDAA 929 + + DN W TS++ L ++ Q D +D+ A Sbjct: 1135 PRLEPIKYDKFSDVMRDNYFYGWAKTSFTALARQLDESTQAMAVVDERIDDATYIDISEA 1194 Query: 930 GVA--SVVEEPTLTPH-------QFPRGASPGTFLHSLFEDLDFTQP------VDPNWVR 974 A + ++E L F +GA+ GTFLH +FE + FT P +D Sbjct: 1195 DGALNAQIQEHGLAIKAVDDIRFSFVKGANAGTFLHEIFEKIHFTNPEQWPAVIDRAVSG 1254 Query: 975 EKLELG----------------------------GFESQWEPVLTEWITAVLQAPLNETG 1006 +L L G + Q L WI VL PL +G Sbjct: 1255 YQLPLAYASVAHQKRILEASRQGANNKTYHIDERGLQHQ---ALMSWINEVLHTPLLASG 1311 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP--------LSAGCPPLEFMQV 1058 L +S + + EM F + +SE A Q++TL ++ P L+A Q+ Sbjct: 1312 QRLVDISPKQRFAEMGFNMGLSETFKAQQINTLFERYLPHEPDKHIRLTAQSSS----QL 1367 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 L+G IDLV+ H G++Y++DYKSN+LG S Y + + AM Y LQ +Y +AL Sbjct: 1368 YRYLRGEIDLVYEHAGKFYVVDYKSNFLGNSLSNYDETTLKLAMSKAGYWLQAAIYQVAL 1427 Query: 1119 HRYLRHRIADY--DYEHHFGGVIYLFLRGV 1146 HR+L RIADY + + G V Y+FLRG Sbjct: 1428 HRFLSMRIADYTGNEAKYLGPVEYVFLRGT 1457 >UniRef50_Q6MFB6 Putative exodeoxyribonuclease V beta chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB6_PARUW Length = 1166 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 232/877 (26%), Positives = 396/877 (45%), Gaps = 106/877 (12%) Query: 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 ++I R ++ + +R +L DD+L ++D A+ E+ I+ + A+IDE Sbjct: 333 ILIARLAKACQKLLRNYQREEEKLSPDDLLRKMDWAIGQEN---FLKQIQMIYQAAIIDE 389 Query: 386 FQDTDPQQYRIFRRIWHHQPET---ALLLIGDPKQAIYAFRGADIFTYMKARSEV-HAH- 440 FQDTDP Q++IFRR++ Q +T L L+GDPKQ+IY+FR ADI+TY+ A + H H Sbjct: 390 FQDTDPLQWQIFRRLFLPQDKTWKGYLYLVGDPKQSIYSFRQADIYTYLAAAQALGHEHC 449 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP-------FIPVKSAGKNQALRFVFKG 493 ++LD N+RS P +VN++N LFS D F +P + PV ++ NQ F Sbjct: 450 FSLDVNYRSQPALVNALNVLFS-PDHTPKFIPLPKTNFHLTYQPVFASTFNQTRLF---E 505 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 + + A+ ++ +G + Q +V I ++ ++ + L S Sbjct: 506 DEKGAVHFFMGDGSNKKNSTIQDLEQKVFFPFIAQEIRRLRKQKTL----------AYSQ 555 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNR-DSVFETLEAQEMLWLLQAVMTPERENTL 612 +VLVR R +A ++ + ++P YL+ R S+ E+ ++ L++AV+ P+ TL Sbjct: 556 FAVLVRDRYQALRLAEYFDSYQLP--YLNQRGTSLAESPALNALIDLIKAVLHPQNIGTL 613 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML-RALMSA---- 667 R+ L S++G + + +N E V+ +Q+ ++G R L S Sbjct: 614 RTLLGNSLIGWSHEKLHDSSNLESILSVI----QSLKQVLIEQGFSIFYDRFLQSCWGKN 669 Query: 668 -RNIAENLLATAGGERRLTDILHISEL-LQEAGTQLESEHALVRWLSQHILEPDSNASSQ 725 +I E LLA GG D+ I+E+ + + L+ +L Q + D N + Sbjct: 670 KLSILEQLLAKEGGVDFYHDLQQIAEIVINHQYHEWNGPEGLIPFLDQ-FQKWDENEDPR 728 Query: 726 QMRLES-DKHLVQIVTIHKSKGLEYPLVW-LPFITNFRVQEQAFYHDRHSFEAVLDLNAA 783 R + K ++I+T+H SKGLE+ +V+ L I +++ ++ ++ L + Sbjct: 729 VKRFQDPSKDGIKILTLHVSKGLEFDIVFALGLIQRNSFKDELIPIEKEGKFVLIPLEES 788 Query: 784 PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ 843 E E AE +R LYVA+TR+ + + ++ + K G+ LGRL Q Sbjct: 789 SEQRLHYCEEIDAEKMRQLYVAMTRAKYQLYIPISLHIPSEQIKYGEASPLDLLLGRLGQ 848 Query: 844 KGEPQDA-----------AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 + + ++ E +D+ + + + + + V +L Sbjct: 849 TECSYETLYDRIRHFNGQSFIKFMEEIGSQNDMTYSIHREIFLEKNKKDSVPFIDLEPPK 908 Query: 893 LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPG 952 + ++S+S L R + P D + + T H P + G Sbjct: 909 SISILTTPLLMSSFSSL-NRISSFSLSQTPPHDFNNS---------IKTEHTLPASSETG 958 Query: 953 TFLHSLFEDLDF-----------TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAP 1001 +H L E + F T P+ W++ ++ WE VL + VL Sbjct: 959 ILIHELLEKISFRDFKGINLAVETLPLIRPWIQNEM-----YRPWENVLAALVYQVLNVD 1013 Query: 1002 LN--ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVR 1059 L + L+ + EM F P L L ++ + Sbjct: 1014 LGIYSSPFCLADIEPSKLVREMTFLFPYESDLAIEGL-------------------VEGQ 1054 Query: 1060 GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 G++KGFIDL+F H+G+YY++D+KSNWLG + Y + AM H Y +Q ++YT AL Sbjct: 1055 GLIKGFIDLIFVHKGKYYIVDWKSNWLGSSNECYDFFHLHQAMLDHNYFVQAKIYTEALK 1114 Query: 1120 RYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIY 1156 RYL+ + +E FGG YLFLRG+ + + Q GIY Sbjct: 1115 RYLK-LVETRAFEECFGGFFYLFLRGI-QSNKQSGIY 1149 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 11/145 (7%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 +L L L+EASAGTGKTF+I + +RLL+ + L + ++LVVTFT+AAT + Sbjct: 5 QLILHQHYLLEASAGTGKTFSIQNIVVRLLIE---NQLEQEALPLSKILVVTFTKAATRD 61 Query: 72 LRGRIRSNIHE--------LRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 L+ RIR NI L + + E T + L + I+ +A + L A + D+ Sbjct: 62 LKLRIRLNIEYALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQ 121 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLF 148 A +FTIH FC RML A ES + F Sbjct: 122 AQIFTIHAFCARMLRQYAIESDIGF 146 >UniRef50_A5GUA0 Exodeoxyribonuclease V beta chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GUA0_SYNR3 Length = 1189 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 336/1219 (27%), Positives = 532/1219 (43%), Gaps = 157/1219 (12%) Query: 8 LDPLRL--PLQGERLI-EASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 ++PL L PL G ++ EASAGTGKT+ ++ LR + G G A ++++LVVTF Sbjct: 2 IEPLDLNGPLTGGTVVLEASAGTGKTYALSHRVLREV-GENGRA-------IDQILVVTF 53 Query: 65 TEAATAELRGRIRSNIHE------LRIACLRETTDNPLYERLLEEIDDKAQAAQWLL--- 115 T AA AE+R RIR+ + E R+A +P + L+ Q + LL Sbjct: 54 TRAAAAEIRRRIRTRLEEASTVLAYRLANDNRLASDPTLDELISRWAASPQGVEVLLNLL 113 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 A ++D A + TIHGF QR++ N G+ +++L E L + D+ R P Sbjct: 114 QAIDRIDLAPITTIHGFIQRLIQDNGTLLGLDPQRRLREGGRSLLQELVNDWRRSVLSPA 173 Query: 176 PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 P ++ W + L L G + + D + L A T Sbjct: 174 P-----APWQAWVQSHSDL-----SLDGLMKLAQLVDDDRDMLLPEPLDTGA---TAVDG 220 Query: 236 WRDAVGELDALIESSGID---------RRKFNRSNQAKWIDKIS--------AWAEEETN 278 W+ + L+ S GI + N+S + K A A + + Sbjct: 221 WQQRHERFERLLASDGISTGEAMQQLCKGTGNKSPAGALLGKTKLAQLPDLIAIARDRND 280 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRET 338 + ++ FS L+ + P L A +QL EP+ + ++T + +R+ Sbjct: 281 IKTYRKLVQAFSTSQLKRVLADPDQAPSSGLHRAAEQLCFEPI---EQLLTDLVHALRQG 337 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTR---FPVAMIDEFQDTDPQQYR 395 + ++ + E+ F D+L R+D A S VLA + R +IDEFQDTDP Q+R Sbjct: 338 AWQRRQLKQEMSFGDLLERVDPARLSPP--VLAGLKQWRQQQLSCCLIDEFQDTDPIQWR 395 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMV 454 +F ++ E L LIGDPKQAIY FRG DI TY A S ++LDTN RS P ++ Sbjct: 396 LFAALFDG--EAPLTLIGDPKQAIYRFRGGDIRTYRSAVSTPERQRFSLDTNRRSDPALL 453 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF-VFKGETQPAMKM-WLME---GESC 509 + +N+LF+ + +F I + V++ R G P ++M WL E G+ Sbjct: 454 SVLNRLFA-GEGSFGSPTIDYRMVQAPEHASPSRLRCADGSPAPPVRMRWLGEADGGKPL 512 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 +G+ + ++ Q ++ L +G L GD R + D++VLV +EA ++ Sbjct: 513 KLGELRDSLPQRVCDDLQRTLSSGME----LQQGDGWRALHPGDLAVLVGRNREAVALQR 568 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEM-LWLLQAVMTPERENTLRSALATSMMGLNA-LD 627 L IP+ D ++++ EA + LWL + ER+ R+A A ++ + L Sbjct: 569 ELQRRGIPARIGRGGD-LWQSPEAASLSLWL----ESSERQGDRRAAAALALSSVGGFLA 623 Query: 628 IETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI 687 E W +++ + RQ + G + L + +A L A GE+RL+D Sbjct: 624 AELSGWSPSDWGAWLQQLEQARQRYALVGPLAALEVVQAAGPGLPRLRGQANGEQRLSDR 683 Query: 688 LHISELLQEAGTQLESEHA--LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 ++ELLQ++ A L+ WL++ L +QQ R+ + + +V + T+H SK Sbjct: 684 RQMAELLQQSWQDQGRPSAARLLHWLNEQQLFGGEGEDAQQ-RIVASESMVTLTTLHSSK 742 Query: 746 GLEYPLVWLPFI--TNFRVQEQAFYH--DRHSFEAVLDLN----AAPESVDLAEA--ERL 795 GLE+PLVW P + + V +A + D VL+L+ ++P + L EA E Sbjct: 743 GLEFPLVWCPTLWEVDGGVDAEAPFRAWDPSQQRRVLELSRRSGSSPRAERLMEARLEGW 802 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD------ 849 E LRL YVALTR+ L + K + L L++ E + Sbjct: 803 QERLRLGYVALTRAKHQLCLDWGRI------KDSGASLPAWLLHPELRQQEAEQPWQAIA 856 Query: 850 -----AAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ---RLPGDNW 901 A+ LR ++ CD+ + P +T L A R P +W Sbjct: 857 DHISRASDLRQALQHRCDELGIHLEDLNPEAPPAYRPAANTQPLAAAAAMIPPRRPFSSW 916 Query: 902 RVTSYSGLQQRGHGIAQDLMPR------LDVDAAGV---ASVVEEPTLTPHQFPRGASPG 952 SYS L H +Q L P D D E+P + P GAS G Sbjct: 917 GRWSYSRL----HDQSQTLSPSAREEEGFDPDRESSPEDPGGAEDPCW--RELPGGASFG 970 Query: 953 TFLHSLFEDLDF----TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET--G 1006 T +H++ E LDF + P VR+++ G + Q L I +LQ PL Sbjct: 971 TLVHAILEQLDFEADLSSPEVRQLVRDEVARSGLDPQLSNSLLGAIEVLLQRPLGGPLGD 1030 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL------EFMQVR- 1059 L+Q+++ + E+ F +P+S + D L + L+A P+ E +Q R Sbjct: 1031 CQLNQIASGDTLRELPFDIPLSGFSASPSSDVLGEALEQLAAHHDPVVQSYARERLQQRQ 1090 Query: 1060 -----GMLKGFIDLVFRHEGR-----YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 G L G IDL+ R R + +LD+K+N L + + M A Y L Sbjct: 1091 AQLSSGFLNGVIDLIIRRPSRDGTQHWVVLDWKTNRL--------VRPINDLMAAKDYWL 1142 Query: 1110 QYQLYTLALHRYLRHRIAD 1128 Q QLY A+ R+L R+ + Sbjct: 1143 QAQLYRQAVQRWLHWRLGE 1161 >UniRef50_D0SSR4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SSR4_ACILW Length = 1367 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 269/1045 (25%), Positives = 438/1045 (41%), Gaps = 136/1045 (13%) Query: 5 AETLDPLR-LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 A + +P++ + +G IEASAGTGKT+T+++L +R+ L +P +++ T Sbjct: 4 AISTNPIQDMKFRGLHWIEASAGTGKTYTLSSLMVRIFL----DQYYPH-----QVIATT 54 Query: 64 FTEAATAELRGRIRSNIHE-------------LRIACLRETTDNPLYERLLEEIDDKAQA 110 FT ATAEL+ R+R + E + I + +PL++++L++ + Sbjct: 55 FTRKATAELKNRVRLRVEETLAYIQRHQQLNSVEITAKIQNETDPLFQQVLKDYGSRLDY 114 Query: 111 AQWLL-LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 A+ L L Q+DE V T+ F Q++L AFESG + +L ED+ L Q D R Sbjct: 115 ARRRLRLVLNQLDELFVGTLDSFSQKLLREFAFESGKIERAELTEDQDLYIQQLIHDVLR 174 Query: 170 RHCYPLPREIAQVVF--------ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR 221 P+ + ++ E + G L+RD + + I+ D L + Sbjct: 175 DWIQQQPQYMVNHLYVQNLLKPVEHYTG---LVRDALNFSKQHFRKIEPAECDLNKLEAC 231 Query: 222 HAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 +Q+V D R E S + + N W SA + + Sbjct: 232 ISQLVNIQDHDLAVMRRYCQESPKYFHKSFLTKLTEICENFMTW----SAALKNQGGMSF 287 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLF-----EAIDQLLAEPLSIRDLVITRALAEIR 336 L+ R K P +F +A QL+ + I V AL E++ Sbjct: 288 FDAELQPIILNLCHLRRKKTDFQPTTQVFNKSCPDAEQQLILQHSLI---VAIDALCEVK 344 Query: 337 ETVARE-KRRRGELGFDDMLS---RLDSALRSESGEVLAAAIRT---------------- 376 + + + ++ L F + S RL L+ + + IRT Sbjct: 345 QYLDEQLQQLTTYLEFHIIQSVQTRLPQTLQQQGETTFSQQIRTLAEALQGQQGQRFAQF 404 Query: 377 ---RFPVAMIDEFQDTDPQQYRIFRRIW---HHQPETALLLIGDPKQAIYAFRGADIFTY 430 R+P+ ++DEFQDT+ Q + +IW + ++++GDPKQAIY FRG D+ TY Sbjct: 405 VQARYPLILVDEFQDTNQDQDDLLAKIWRDVNRVQSGCMIMVGDPKQAIYGFRGGDMLTY 464 Query: 431 MKARSEVHA----HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 KA ++V YTL N RS +V V+ LF + D F E + AG Sbjct: 465 NKAHADVRHKQGREYTLMQNHRSVKPLVEVVDALFQRQMD---FGEQVQYTLIQAGSRPH 521 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 V G T P W+ GES A A +IR L + + + Sbjct: 522 PDLVDTGITNPQPLRWIQLGES-------DLEADQVAWKIRALLNQSAQQQLYFQQQEHQ 574 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 + A DI+VL QV+ L + IP Y ++ SVF + AQ++ +L A+M P Sbjct: 575 HSLSADDIAVLGFGHFALEQVKQRLQRMGIP-CYKESKQSVFASPIAQDVAAVLTAIMDP 633 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 E ++ AL T ++G N + L + + D R++W ++G + ++ Sbjct: 634 FNEAKVKRALLTRLLGFNLKKLIDLQGQSEGLSRYIADLDIIREMWFEKGFLTAWNYALN 693 Query: 667 ARNIAENLLATAG--GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASS 724 + NL+A+ ER + ++ H++E+L + + L W + + P S Sbjct: 694 LFQVWTNLVASQSLDNERVVVNLRHLTEILSQQSEYYQGAQKLYHWYLRQLQSPSGKDSE 753 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWL-----PFITN-------FRVQEQAFYHDRH 772 ++ +L D H VQ++TIH SKGLE+ +V+L F N EQ ++ Sbjct: 754 KERKLSGD-HGVQLMTIHASKGLEFKVVFLLGADAAFDVNKGNLNFSLSAPEQDNILEQS 812 Query: 773 SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 AV N +++ A AE+ RL YVALTR+ S V +++ D+ +D Sbjct: 813 RVIAVNHKNLHEQAILQNAARNAAENHRLWYVALTRA----SHRVYAMLQ---DQNAQSD 865 Query: 833 VHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 S L +G+ L + +E + Q+ +Q ++ A+ Sbjct: 866 ---SGLAFWRGQGDQLFQHAL-SLVEPPLSQEPPRLVEQSNHHQ---------VDMRAQP 912 Query: 893 L---QRLPGDNWRVTSYSGLQQRGHGIAQDLM-----PRLDVDAAGVASVVEEPTLTP-- 942 L Q P T+ S Q GH + DL+ P D + E+P P Sbjct: 913 LPERQFYPRTKTSFTALSQHQLHGHILQDDLVTAYEQPDSAADEIHFTGLEEQPAAVPLD 972 Query: 943 ---HQFPRGASPGTFLHSLFEDLDF 964 FP+G GTFLHS+FE +DF Sbjct: 973 WIRLNFPKGTVAGTFLHSIFEHIDF 997 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 10/188 (5%) Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISE-PLIASQLDTLIRQFDPLS 1047 ++ +W+ +L P+ + +L+QL A+ E FYL +++ PL Q+ L D + Sbjct: 1179 LMHDWVHDILATPI-QVDFALAQLEAKQYLSEFPFYLSLTDAPLQIRQIHQLFLGHDIVM 1237 Query: 1048 AGCPPLEFMQVRG--MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 + +F + + L G IDLV+ RY++ DYKSN+LG D Y+ +A+ M Sbjct: 1238 S-----DFNEAKSARYLTGSIDLVYFDGQRYHIADYKSNFLGPDQQHYSAEAIQQNMSQS 1292 Query: 1106 RYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 Y LQ LY +ALHRYL + Y H GG YL+LRG++ + QQG Y +P+ I Sbjct: 1293 SYWLQAALYLVALHRYLSANMQGYSITQHLGGATYLYLRGMNGQ-VQQGAYHWQPSLEFI 1351 Query: 1166 ALMDEMFA 1173 +D++ Sbjct: 1352 EKLDQILG 1359 >UniRef50_C8PVF0 UvrD/REP helicase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVF0_9GAMM Length = 1504 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 250/1021 (24%), Positives = 400/1021 (39%), Gaps = 217/1021 (21%) Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW------------- 401 L+RL+ AL + G+ LA IR ++P+A+IDE QD + +Q + +R++ Sbjct: 494 LARLNDALSGKKGQSLARYIRHQYPIALIDESQDINTEQALLIQRVYLQDFEPETAEKSN 553 Query: 402 ---HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-HAHYTLDTNWRSAPGMVNSV 457 +H P LLL+GDPKQAIY FRG D+ Y + +L+ N RS+ +++S+ Sbjct: 554 TKKYHTPSQFLLLVGDPKQAIYGFRGGDVQNYTTLKKLFPEKPKSLNQNHRSSAALIDSL 613 Query: 458 NKLF---------SQTDD--------AFMFREIPFIPVKSAGKNQALRF--VFKGE--TQ 496 N + +Q D FM REI + + + +N L F V E + Sbjct: 614 NHWYGVGEQDIDPNQADQLPNVNQQPYFMGREIYYRKISATRQNAELVFANVVDNEAASL 673 Query: 497 PAMKMWLMEGES------CGVGDYQST--------------------MAQVCAAQIRDWL 530 PA +E ++ V + T A AAQI D Sbjct: 674 PAFNHIAIEYKAPYSQQVVAVAENDGTSNDTDSSNDIISSSDERTVDYADAIAAQIFDLF 733 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 G+ R + SDI VL E + L I +V SVF Sbjct: 734 DDGKPLSY------QTRGLTLSDICVLAVKNSELHTIEKRLHHHGIATVR-GGSQSVFGD 786 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN----------------- 633 + +++ L ++TP E+ L+S + +S L I L + Sbjct: 787 SMSVDLMTLQSVLLTPFSESKLKSLMLSSFFQLTLEQINQLYDALNQTNAQAAQGQAQPH 846 Query: 634 --DEHAWDVVVEEFDGY----RQIWRKRGVM---------PMLRALMSARNIAENLLATA 678 + + + + E ++W+K + P+ + N + L Sbjct: 847 QAHQASTNTSLAEIQQLVLTASELWQKHSFLVAIQWLLNQPLTLPSQTTLNFWQRLAKHP 906 Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 GER L D+ + +++ + EH L W + + S Q RL SD+ VQ+ Sbjct: 907 NGERLLIDLRQLLDIISDQFNGQVGEHQLFEWFCAQVQQQPKEDWSTQQRLPSDEG-VQL 965 Query: 739 VTIHKSKGLEYPLVWLPFIT-----NFRVQEQAFYHDRHSFEAVLDL------------- 780 +T+H SKGLE+P+V++ T FR Y + + +A Sbjct: 966 MTVHASKGLEFPIVFVVGFTGESKAKFRGAPLYLYGIQTTHQATPQFTQKLTQNNNNPLL 1025 Query: 781 -------------NAAPESVDLAEAERLA---EDLRLLYVALTRS---VWHCSLGVAPLV 821 N + +S++ E + E LRLLYVALTR+ V+ ++ V Sbjct: 1026 SRRLTALPTQIADNNSIDSINYVAIEDQSAYEERLRLLYVALTRAKEQVYLVTVAKKSAV 1085 Query: 822 RRRGDKKGDTDVHQSALGRLL-QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 880 R D+ + A+ L + D+ L D + + N+ Sbjct: 1086 RNSALAPFMDDLAKFAVKETLTETTHIIDSNSL----SKYYDSKLKFTPKTNRQNEQNAT 1141 Query: 881 NDVSTAELNAK------TLQRLPGDNWRVTSYSGLQQRGHGIAQDLM----PRLDVDAAG 930 + A+++ T+ G W TS++ L + + D + R D D Sbjct: 1142 VAKTVAKIDYDEIIKVITIDTFKG--WANTSFTALSRYIEHTSVDTVVNAEDRQDDDILS 1199 Query: 931 VASVVEEPTLTPH--------------QFPRGASPGTFLHSLFEDLDFTQPVDP------ 970 A + P F +G +PGTFLHS+ ED+ P Sbjct: 1200 AAQIRLLPISNSRLARESGNEVNSIRFNFEKGTNPGTFLHSVLEDIANNYNETPELAVPQ 1259 Query: 971 --------------------------NWVREKLELGGFESQWEPV-----------LTEW 993 N+ K G W + L +W Sbjct: 1260 QDARADKLKRWSVMVDRTLRRYQMPSNYFSTKESSAGQYGNWHDINIDDLQPDYVALVDW 1319 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD-PLSAGCPP 1052 + ++ PL + V L + K E+ F L +++ L S L+ L QFD PL Sbjct: 1320 LDDIIHTPLAASSVPLVNIKYNQKVAELGFNLRLNQHLSFSDLNALFHQFDIPLQLQSQE 1379 Query: 1053 LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 + M V LKG IDLV++H +++++DYKSN+LG D +Y Q A+ AM H Y LQ Sbjct: 1380 VNTM-VWQYLKGEIDLVYQHGTQFFIVDYKSNYLGNDFDSYNQAALYDAMTTHSYWLQAS 1438 Query: 1113 LYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 +Y +ALHRYL+ R+ +YD H G V Y FLRG+ +H +G + ++ I +D+MF Sbjct: 1439 IYQVALHRYLKLRLPNYDISTHLGAVEYAFLRGMSPKHDTRGKLVKQFDSAFILALDDMF 1498 Query: 1173 A 1173 Sbjct: 1499 G 1499 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 14/112 (12%) Query: 5 AETLDP--LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 AE L P + LPL G LIEASAGTGKT+T+ + LRL++ G +P E+++ Sbjct: 39 AEPLLPPAVTLPLTGRHLIEASAGTGKTWTLTGVMLRLIVQAG------QP--CEKIIAT 90 Query: 63 TFTEAATAELRGRIRSNIHELR--IACLRETTDNPLYERLLEEIDDKAQAAQ 112 TFT +A AE+R RIR + + + + +T PL + L+ KA A Q Sbjct: 91 TFTRSAAAEMRQRIRERLQDFYQLLQMINHSTFTPLNDSDLDS--SKAIAVQ 140 >UniRef50_A5EXI1 Exonuclease V, beta subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXI1_DICNV Length = 1198 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 232/879 (26%), Positives = 401/879 (45%), Gaps = 80/879 (9%) Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 L +R + + +G+ F+ +RL+ AL ESG LA I R+PV ++DE QD + Sbjct: 363 LLAVRSQLPAQLEMQGKATFNHYTARLNQALAGESGAALARYIAHRYPVLLVDESQDLNA 422 Query: 392 QQYRIFRRIWHHQPET---ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH--YTLDTN 446 QQ + RI+ E LLL+GDPKQAIY FRG D+ Y++ ++ Y+L N Sbjct: 423 QQAQFIERIYLKNLEADRHFLLLVGDPKQAIYRFRGGDVANYLRLKAAFSQQECYSLTKN 482 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS+P ++ ++NKL+ D A I + P+ +A +AL+ V P + WL Sbjct: 483 YRSSPALIAALNKLYQ--DRAAFGGGIDYEPMTAAVTQRALQSVDGAAITPPL-YWL--- 536 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 E+ ++ + + + ++ + A + + RP+R SDI VL SR + + Sbjct: 537 ETKNDNEHLAIVHLIQNLTAKNSIYAYH-------DKQNRRPLRYSDILVLGTSRSKLEE 589 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 ++ L I +V S S+F + A + L A++ P+++ L + L+ Sbjct: 590 LQILLQQHGI-NVDYSAEKSIFASDLAAAIATFLAAMLAPQQQEQLNRLFISPFFRLSLA 648 Query: 627 DIETLNNDEHAWD-----VVVEEFDGYRQIWRKRGVMPMLRALMSAR----NIAENL--L 675 ++ L+ A + V+ E + Q+W+++ ++ L+ ++ I E L L Sbjct: 649 ELTALSQPSSALNYAQLSAVLTEAE---QLWQQKKLLSALQLFLTTDFAGLTIWERLARL 705 Query: 676 ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 ER L D+ + +++ + G +L++ +RW + + ++ M L S L Sbjct: 706 PYPENERALLDLRQLQQIIADRG-RLDTLDQFLRWWKFMLTTLPTADWAKMMPLPSQDAL 764 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL 795 +++TIH +KGL+ P+V + + R + FY H+ A D A E V+ + E Sbjct: 765 -RLMTIHSAKGLQAPVVIISGLGKHRKHDALFY-PYHT--ATGDFRIATEKVEENQQEDD 820 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 E RLLYV LTR+ + + L ++ GD D L + K + L Sbjct: 821 DEKARLLYVGLTRAEDLLFVALQSLRKKDGDFFADAHAGMKRLDPVRFKNTAVNHGFL-- 878 Query: 856 CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRLPGDNWRVTSYSGLQQRGH 914 ++ +++A + Q ++T E + QR G W +S++ L + Sbjct: 879 ---SVNPEELAQRLTQPQYTLSSASETIATIEQDPTYPRQRFYG--WSKSSFTALTRYVD 933 Query: 915 GIAQDL-MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN-- 971 D+ +P + A ++ + P +F RG G+FLH L +DL P P Sbjct: 934 ENTVDISLPDYAEEEAESETIADPDLALPARFARGTKAGSFLHQLLKDL----PETPAQF 989 Query: 972 W------------VREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQV 1019 W + E+ +Q+E W A++ +PL + +L+ LS K Sbjct: 990 WRGHIERLAKQYRLLERTAALDDYAQYEA----WFQAIMASPL-VSQTTLAALSPAQKVD 1044 Query: 1020 EMEFYLPIS-EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLK---GFIDLVFRHEGR 1075 EM+F L ++ + S ++ L +++ PL Q + ++ G ID ++ + + Sbjct: 1045 EMKFILHVAGKSFNISAVNRLFERWEK------PLTLHQKQASIRFLCGEIDFCYQQDDK 1098 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 YY +DYKSN+LG Y AM AM H Y LQ +Y ALHR+L+ R+ +Y H Sbjct: 1099 YYFIDYKSNYLGTAPQEYHVSAMKKAMNEHHYWLQALIYQTALHRFLQTRLKNYQPALHL 1158 Query: 1136 GGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 G Y F+RGVD E G + L+ D + +G Sbjct: 1159 GYPEYFFIRGVDAEEQTLGHFPVDLPLDLVLEFDAILSG 1197 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLG-LGGSAAFPRPLTVEELLVVTFTEAAT 69 + PL G+ LIEASAGTGKT+T+ + LRLLL + F R E ++ TFT A Sbjct: 6 MDFPLSGKVLIEASAGTGKTYTLTGILLRLLLSEVPSKGIFAR--APEAIIATTFTRKAA 63 Query: 70 AELRGRIRSNIHEL 83 AE+R R++ ++ + Sbjct: 64 AEMRMRLKMRLNAM 77 >UniRef50_B2S0X7 Exodeoxyribonuclease V beta chain n=5 Tax=Borrelia RepID=B2S0X7_BORHD Length = 1157 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 282/1223 (23%), Positives = 496/1223 (40%), Gaps = 187/1223 (15%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 LIEASAGTGKT+T+ LL+ S + E+LV+TFT+ AT E+ RI + Sbjct: 26 LIEASAGTGKTYTLENTITNLLINKMYSPS--------EILVLTFTKKATEEMHIRILKS 77 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I A TD L K Q + +++ A++ ++ F N Sbjct: 78 IEN---AYQNSKTDKSL----------KTIYEQSNKIFISTINKFALYALNNFQIETENF 124 Query: 140 NAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINR 199 + + F ++ DE + + +D ++ EI FE +K +D+ + Sbjct: 125 SKYSVKENFTSEI--DEIVYEFLRKSDSLKKEF-----EIKDDEFEIFKSKFKNTKDMTQ 177 Query: 200 YLQGEAPVIKAPPPDD--ETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKF 257 Y++ K D ET + Q++ D + ++ V +AL E + ++R F Sbjct: 178 YIRQGYKRDKTQELGDWIET-QTIFNQMLTNKDKLIDKYNLIV---EALNEMTMEEKRTF 233 Query: 258 -NRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG---------ETPRH 307 N+ NQ I +I E++ + KF + +E K +T Sbjct: 234 LNKHNQGIKISEIKYSHEKDIVKITDILTNNKFFCKIIESNLKKNVTLLPKELKIQTALR 293 Query: 308 PLFEAIDQLLAEPLSIRDLVITRALAEIRETVARE----KRRRGELGFDDMLSRLDSALR 363 L + + ++R + + +I + + RE + ++ L L Sbjct: 294 ELSHETNTDKEDKNTLRRFINLKVEYKILKYIERELATTINATNTIDQKQIMLNLKKHLE 353 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 S +L + I+ R+ + +IDE QD D Q IF + L+ I DPKQ IY FR Sbjct: 354 SRDNRLLNS-IKNRYKIILIDEAQDLDLIQIEIFELL--SSCGIKLVFIADPKQIIYTFR 410 Query: 424 GADIFTY---MKARSEVHAHYTLDTNWRSAPGMVNSVNKLF------SQTDDAFMFREIP 474 ADI Y +K + + A TL TN+RS ++ +N +F ++TD+ +I Sbjct: 411 NADISFYNQNIKDKIKDDARITLLTNYRSNKKLIEPLNIMFDNIYNKARTDE---IEQIK 467 Query: 475 FIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 F K+ KN + G+ A+ + E + + Q A I+ L G+ Sbjct: 468 FTKSKTDPKNDENKIFVNGQEIEAINIIETEEDK--------NVLQKTALTIKYLLTNGK 519 Query: 535 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 + + + R ++ SDI VL R+ +E + L ++ + L+ +S F+T E Sbjct: 520 -----IYDNNKLRQIKESDIKVLCRTSKEVDFIDRELKNQDVKTNKLA--ESFFKTKEFN 572 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGL-----------NALD---------IETLNND 634 + +L++ + + TL L + ++ L N + I L N Sbjct: 573 LIFYLIKCLDRKQNFQTLNYILTSKIINLPWELYLSLLEENGIKHIEEAIIDIIYLLENQ 632 Query: 635 EHAWDVVVEEFDGYRQIW-------RKRGVMPMLRALMSARNIAENLLATAGGERRLTDI 687 E ++E + +W R ++ S R I L G L + Sbjct: 633 EITLIEAIDEIISKKDLWLNLAKNFRNTTFTEFAQSKKSYREI----LINEGKFEELKNY 688 Query: 688 LHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 + + + + ++ +L+ L IL D ++ D ++I+TIHKSKGL Sbjct: 689 ETSLDFISKIYYEDKNIESLISTLEDLILNKDIEQDEDKIT-TGDNQAIEILTIHKSKGL 747 Query: 748 EYPLVWL----PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 +V+L N + FY + D E+ A+ + L E+ + Y Sbjct: 748 SINIVFLIGDIQNNDNLLKKSDTFYKFYSKNKIEYDFLKLKENQQFAKNKILNEEQNIFY 807 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 V TR+ + A + +G + + ++L+ E + IE + + Sbjct: 808 VGTTRARF------ALFIINQG----------ATINKMLELAEIK-------TIEKINLN 844 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAEL------NAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 + +T +ND +L N ++ ++ TS + + + H Sbjct: 845 FNVYNLIKTNQFNKLDINDNKEIKLIPPKPINKYLFRKEHTHSY--TSLASIYKSNHH-- 900 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT---------QPV 968 ++ R D + + T + PRG G LH++ +D++F+ Q + Sbjct: 901 ENPETRND------ETYDNDATCSGETLPRGKDIGNILHAIMQDINFSDAKDSFNNFQKI 954 Query: 969 DPNWVREKLELGGFESQW-----EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 + +++K+E F S+ + +L + I +L + G L + Q EMEF Sbjct: 955 NIALIQKKIE--HFNSKLNTPKLQEMLIKMIYNILNTKIRFIGARLCDIQEL--QKEMEF 1010 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 + I +T I + L L+ + G +KG IDL+F+ + Y+LDYK+ Sbjct: 1011 LIKI---------NTKIYEQKSLFKDHNKLDLVLNDGYIKGIIDLIFKINNKIYILDYKT 1061 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 N+LGE+ Y + M+ +YDLQY++Y L + + L I +Y+ HFGGVIYLF Sbjct: 1062 NYLGENLKDYNLTNLKKKMKQEQYDLQYKIYALGIKKILFKNIEEYN--KHFGGVIYLFT 1119 Query: 1144 RGVDKE-----HPQQGIYTTRPN 1161 R K Q GIY+T PN Sbjct: 1120 RAFQKNIKEQSKTQNGIYSTIPN 1142 >UniRef50_Q6FF16 Exonuclease V, beta chain n=2 Tax=Acinetobacter RepID=Q6FF16_ACIAD Length = 1234 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 228/876 (26%), Positives = 380/876 (43%), Gaps = 117/876 (13%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 + G LIEASAGTGKT+T+++L +R+ L P ++++ TFT AA AEL Sbjct: 14 IEFSGLHLIEASAGTGKTYTLSSLMVRIFL----EKYLP-----QQVIATTFTRAAAAEL 64 Query: 73 RGRIRSNIH-------------ELRIACLRETTDNPLYERLLEEIDDK-AQAAQWLLLAE 118 + RIRS +H E I + +PL E LL++ + A + L L Sbjct: 65 KARIRSRLHQTLTYLQECRGLTESEILQKAQQETDPLLEYLLQQFSLRIGYACERLKLVL 124 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 Q+DE V T+ F Q++L AFESG + + +D Q D R P+ Sbjct: 125 DQLDELFVGTLDSFSQKLLREFAFESGKIERADITDDAKAYTRQLIHDVLRAWIQAQPQA 184 Query: 179 IAQVVFE--TWKGPQALLRDINRYLQGEAPVIKA--PPPDDETLASRHAQIVARID-TVK 233 + ++ K A + + L + + P D + A + +ID T Sbjct: 185 LIDGLYNMGALKSVDAFVGLVESSLNFSSAKFQQQQSPEIDLYALEQVAALACQIDVTPL 244 Query: 234 QQWRDAVGELDALIESSGIDRRKFN------------------------------RSNQA 263 + GE + I S F+ R Sbjct: 245 SSYYQLDGEYYSFIHGSSFRNHGFHALFVQHIPCLLKALQQDSVLSIFDPAFKASREAAD 304 Query: 264 KWIDKISAWAEEETNSYQLPESL-EKFSQRFLEDRTKAGGETPRH--PLFEAIDQLLAEP 320 K+I+K+ E+E + P + + F Q + + K +T +H FE +D L Sbjct: 305 KFIEKL----EQEKIFKKCPADVSDGFYQHAVVAQLKQVIQTLQHYQAQFEQLDHALKAY 360 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPV 380 L I E+++ + + + +GE F +S L AL+ E G+ A ++ R+P+ Sbjct: 361 LCI----------EVKQRLPQVLQEKGETTFSQQISTLAEALKGEQGQRFAIFVQARYPL 410 Query: 381 AMIDEFQDTDPQQYRIFRRIWHH---QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV 437 ++DEFQDT+ Q + IW H + ++++GD KQAIY FRG D+ T++ A ++ Sbjct: 411 ILVDEFQDTNQDQDDMLASIWRHPQRYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYQDI 470 Query: 438 -HAH---YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 H Y L N RS +V V+ LF + + ++ + P++ AG + + Sbjct: 471 LHKQGREYKLSQNHRSVKPLVEVVDALFQRQPN--FGEQVIYDPIQ-AGSRAHPALMDRA 527 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 + A W+M + +++ A+ A +IR L GE L +G + A D Sbjct: 528 QVNTAPLRWIMLQD-------KASEAEQVAWKIRALLNQASSGELYLKDGSVHHSIIADD 580 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I+VL ++ + V+ AL L I V +R SVF+ + A ++ L A++ P E ++ Sbjct: 581 IAVLSKNHKGLDDVQAALEYLNI-KVNRPSRRSVFDHVVAHDVGAFLTAILFPYDEAKVK 639 Query: 614 SALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 AL + +MG + + L + + DG R+IW +G +P + ++ + +N Sbjct: 640 RALLSRLMGFDLERLYQLEQSPVGLSDYMNQLDGLREIWLHQGFLPAWQRGLNIFQVWQN 699 Query: 674 LLATAG--GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 L A ER + ++ H+SELL + Q + L W + + P + +L S Sbjct: 700 LGAKHSRENERAVVNLRHLSELLSKHSEQYQGAQNLYHWYLKQLRSPSEREWELERKLSS 759 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPFITN-FRVQEQAFYHDRHSFEAVLDLNAA------- 783 D VQ++TIH+SKGLE+ +V+L R Q + R +LD + Sbjct: 760 DAG-VQLMTIHQSKGLEFKIVFLLGADKPLRDQNKDLNFSR---AEILDESTGQMQTKRV 815 Query: 784 ----------PESVDLAEAERLAEDLRLLYVALTRS 809 PE++ AE R+ YVALTR+ Sbjct: 816 IAIADKTQLTPEAIIQHTERATAEQNRIWYVALTRA 851 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 29/255 (11%) Query: 945 FPRGASPGTFLHSLFEDLDFTQPVD---------------------PNWVREKLELGGFE 983 FP+G G FLH +FE ++F Q + P ++ EL G E Sbjct: 981 FPKGTLAGNFLHEIFEHINFNQTEEWITEIRRRFKNDYGSLWEMLYPVYIDAFPELNGDE 1040 Query: 984 SQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 ++ L +W+ VL+ PL++ L QL + E FYL +S+ ++A + + + F Sbjct: 1041 NRLYQWLADWLDDVLKTPLHQ-DFQLKQLQSGQFLSECPFYLALSDRVLA--MRRIQQLF 1097 Query: 1044 DPLSAGCPPLEFMQVRG--MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 P EF+ L G IDL++ R+++ DYKSN+LG D + Y A+ Sbjct: 1098 IEYHIEMP--EFLDAYSARYLNGSIDLMYFDGQRFHIADYKSNFLGTDQTHYDGLAIREN 1155 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 M Y LQ LY +ALHRYL+ ++ Y+ H GG YL+LRG++ H QG Y +P Sbjct: 1156 MTHSSYWLQAALYLVALHRYLKVKLEHYEIAEHLGGATYLYLRGMNG-HTGQGYYYWKPE 1214 Query: 1162 AGLIALMDEMFAGMT 1176 I +D + T Sbjct: 1215 DEFILRLDAILGYAT 1229 >UniRef50_B0SIS6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS6_LEPBA Length = 1209 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 234/894 (26%), Positives = 403/894 (45%), Gaps = 110/894 (12%) Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 L +D M+ ++ + ++L ++R RF V ++DEFQDTD QY+IF+ ++ + + Sbjct: 345 LTYDQMILKVYDVIVRNPNQILIQSLRERFQVCILDEFQDTDKNQYQIFKTLFLDKDTKS 404 Query: 409 --LLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNKLFSQTD 465 L IGDPKQ+IY FRGADI Y++A + + TL+TN+RS +++ +N +F D Sbjct: 405 RMLFCIGDPKQSIYGFRGADIGIYLEASRDFEGSKSTLETNYRSTKELIHGLNTIFH--D 462 Query: 466 DAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM-----KMWLMEGESCGVGDYQSTMAQ 520 + + E F P++ G ++ +++K + P + K E + + D++ Sbjct: 463 ETKEWGETHFFPIEEPGSSKE-NYLYKKVSSPDIDTIKYKYVNPEESAIHIFDFEERFPN 521 Query: 521 VC------AAQIRDWLQAGQRGE-ALLMNGDDAR---PVRASDISVLVRSRQEAAQVRDA 570 V A IR+ ++ Q E +LL N R ++ DI++L +++E V Sbjct: 522 VNKSRNIWAETIRNEIKRIQNKETSLLYNKKGEREIQEIKLKDIAILCGNKKETELVEFY 581 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 LT IP R ++++ EA ++ LL+ + + + + L + + ++ +I+ Sbjct: 582 LTKAGIPCSIYKQR-GIYQSREADQIENLLECLQSSNSSQSYKKILFSDIFCIHPHEIQK 640 Query: 631 LNNDEHAWDVVVEEF-DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG-----ERRL 684 DEH+ D + D ++++ ++ R++M L G ER+ Sbjct: 641 F--DEHSIDSYEKSLIDKWQRLIKENRYASFFRSVMDET----KLFWLEGNHTLEWERKR 694 Query: 685 TDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL---ESDKHLVQIVTI 741 T+ I + L E QL+S L+ L+ S ++ L E+++ VQI+TI Sbjct: 695 TNFRQIFQKLLEV--QLKSNCGLLELLASLRELKQKKQSPEEEPLFDRETEEDSVQILTI 752 Query: 742 HKSKGLEYPLVWLPF-------ITNFRVQEQAFYHDRHSFEAVLDL-NAAPESVDLAEAE 793 H SKGLE+P+V+L + +TN + + + +LDL + PE D E Sbjct: 753 HASKGLEWPVVFLFYFGNRGTNLTNTEYPIEIETPEGKKRKWILDLWDLNPEKED-EENH 811 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGD----KKGDTDVHQSALGRL--LQKGEP 847 L E RLLYVALTR L R + + G + + L R+ LQ P Sbjct: 812 FLNEQKRLLYVALTRPNLRLYLPKLNWGRSKKEDSLPNSGYSQILYQELIRIQTLQNQNP 871 Query: 848 --QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTS 905 + + R E I QT+ + + +E+ G S Sbjct: 872 FLESSFVFRNPNEFSESQTINLQTSSVTQTKKPSFPILYPSEIKI-------GRVLLQHS 924 Query: 906 YSGLQ--QRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD 963 Y+ LQ ++ ++Q+ + + V T + P A G FLH + E D Sbjct: 925 YTSLQANEKNLNVSQEEKKKELEETPDVE------VSTTFELPSSAKVGNFLHKILELCD 978 Query: 964 FTQ---PVD-----PNW--------VREKLELGGFESQWEPVLTEWITAVLQAPLN-ETG 1006 F+ VD P+W +R LE+ G +++ E + + + A + TG Sbjct: 979 FSTFQLEVDAILESPSWKWAYQKSFLRYPLEIEGKDAKIEHTVATLLKHAMTAKIKLATG 1038 Query: 1007 --VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 SLS+L K E++F+L + + L+ +L F+ LKG Sbjct: 1039 NSFSLSELKEEEKSAELKFHLFL-QNLLKESGASLTDGFE---------------HYLKG 1082 Query: 1065 FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 IDLVF + ++Y++DYKSN L + Y+ +A+A A++ Y Q +Y+ L YL+ Sbjct: 1083 AIDLVFVKDQKFYIVDYKSNLLPNND--YSSEAVANAVRDKGYLFQKSVYSFILFEYLKS 1140 Query: 1125 RIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 FGGV YLFLRG+ ++ Q GIY+ ++ + + E F G+ E Sbjct: 1141 LFGPDIALEKFGGVYYLFLRGMLGDN-QTGIYSDLKHSDSVWTI-EQFEGIKKE 1192 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 26/142 (18%) Query: 20 LIEASAGTGKTFTIAALYLRLLL-GLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 IEASAGTGKT I + ++ + R L + LV+TFTE A EL+ R++ Sbjct: 13 FIEASAGTGKTHLIMQMLGDVMTHDVTNHTKENRLL---QFLVLTFTEKAAGELKARLK- 68 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 L+I L E +P Y L R +D+ + TIHGFC +L Sbjct: 69 ----LKILELYENGKHPEYYHYL-----------------RDLDQVTISTIHGFCNMVLT 107 Query: 139 LNAFESGMLFEQQLIEDESLLR 160 E+ +L +E L+R Sbjct: 108 EYPVETQNNPNVKLTSNEELIR 129 >UniRef50_O51578 Exodeoxyribonuclease V beta chain n=20 Tax=Borrelia burgdorferi group RepID=EX5B_BORBU Length = 1169 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 272/1259 (21%), Positives = 507/1259 (40%), Gaps = 242/1259 (19%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 LIEASAGTGKT + + + L+ + ++ E+LV+TFT+ AT E+ RI Sbjct: 15 LIEASAGTGKTHILENVVINLIK--------TKLYSINEILVLTFTKKATEEMHTRIL-- 64 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 +++E ++ + L A Q + + TI+ F LN Sbjct: 65 -------------------KVIENAYSNSKTNEILKEAYEQSKKLFISTINKFALHALN- 104 Query: 140 NAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR--DI 197 F+ IE E+ +Y+ F +EI ++V++ + +L++ DI Sbjct: 105 -NFQ---------IETENYSKYKPKEKF--------SKEIDEIVYDFLRKSDSLIQALDI 146 Query: 198 NRYLQGEAPVIKAPPPDDETLASR----------------------HAQIVARIDTVKQQ 235 Y E V K+ E + + I+ + + + + Sbjct: 147 KDY---ELKVFKSDAKKTEEIVLKIKKAYERDTTQELGDWLKTQTAFENILLKKEELIKD 203 Query: 236 WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL--EKFSQRF 293 + + +LD + + + +N+ Q K+ +E + +++ E+L KF Sbjct: 204 YNKIIEDLDKMTKDEILSF--YNKHIQT---GKLEIEYSKENDIFKIAETLLKNKFFSTL 258 Query: 294 LEDRTKAG-----------------GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR 336 +E TK G +H +++ D +++ VI + +I Sbjct: 259 IEKETKKNSKLSPKELKIKNDLICLGINIKHEKYKSEDNRNKNRNNLKQYVILKVEYKIL 318 Query: 337 ETVAREKRRR----GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 + + +E ++ + + ++S L + L+SE ++L A I+ R+ + +IDE QD Sbjct: 319 KYIEKELKKTIKSTNTIDQNYIISNLKNYLKSEDKKLLNA-IKNRYKIILIDEAQDLSLI 377 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY---MKARSEVHAHYTLDTNWRS 449 Q IF+ + L+ I DPKQ IY+FR ADI Y +K + A L N RS Sbjct: 378 QIEIFKIL--KTAGIKLIFIADPKQIIYSFRKADISFYNKEIKNKINTDARIVLKINHRS 435 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSA---GKNQALRFVFKGETQPAMKMWLMEG 506 + ++ +NK+F+ + + EI I ++ KN + V G+ + + Sbjct: 436 SKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDNNKIVINGQEIEGINIITTNT 495 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 ES + + Q A I+ L G+ E + R ++ DI VL R + E Sbjct: 496 ES------EEDIYQKTALTIKYLLAYGKIAE-----NNKIRNIKMQDIKVLCRGKNEINL 544 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 + AL +I + ++ +T E E+ ++++ + + TL L++ ++ + Sbjct: 545 IDKALKKEQIQTN--KTQEKFLKTKEFSEIFYIIKCLDRKQSFKTLNYILSSKILNV--- 599 Query: 627 DIETLNNDEHAWDV-----------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL- 674 W++ ++EEF + ++ + ++ A+ + +NL Sbjct: 600 ----------PWNLQRILIKQDKICLIEEFIENIIVLLEKNEITLINAI-NKITFEKNLW 648 Query: 675 --LATAGGERRLTD-----ILHISELLQEAGTQ-LESEHALVRWLSQHILEPDSNASSQQ 726 +A ++++ + I + L++E + L++ + +S+ I + N S Sbjct: 649 IKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISK-IYHKEQNIQSLI 707 Query: 727 MRLES-------------------DKHLVQIVTIHKSKGLEYPLVWLPFIT-----NFRV 762 LES D ++++TIHKSKGL +V+L T NF Sbjct: 708 STLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFLLNTTPIENSNFFS 767 Query: 763 QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 ++ FY + D E+ A + L+E+ + YV TR+ + +L + + Sbjct: 768 KKNQFYKFYQDGKIEYDFFKLEENKKYARLKILSEEKNIFYVGATRAKF--ALFIIKI-- 823 Query: 823 RRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVND 882 S +LL+ A + T + D +I Q N+ + Sbjct: 824 ------------NSITSKLLE------IAKIFTIDDIKHDFNIHEFIGQKRFNKKKYNTN 865 Query: 883 VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE---EPT 939 V+T + K + + +S+S L + H ++ D E EP Sbjct: 866 VNTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHH--KEFYENYDFKNINYEKETELDYEPG 923 Query: 940 LTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITAV 997 L P+G G LH+ E++ F+ D N+ + +E+ E Q + + + T Sbjct: 924 L-EETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEI--IEKQIQKINSNLNTIE 980 Query: 998 LQAPL-----NETGVSLSQLSAR-----NKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 1047 +Q L N ++ ++ R Q EMEF + I+ P Q + F+ L Sbjct: 981 IQNSLAKMIYNILTYNIRAINTRLCDIEELQKEMEFLIKIN-PEFQKQKYLFDKHFEDLH 1039 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 G LKG +DL+F+ + Y+LDYK+N+LG++ Y + ++ Y Sbjct: 1040 IKLSD-------GYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYY 1092 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD------KEHPQQGIYTTRP 1160 DLQY++Y L + + L +Y+ FGG+IYLF R + K + GIY P Sbjct: 1093 DLQYKIYALGIKKILFKNKKEYN--QKFGGIIYLFTRAFEDNIECLKSKFENGIYFNLP 1149 >UniRef50_Q46K42 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Prochlorococcus marinus RepID=Q46K42_PROMT Length = 1261 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 219/880 (24%), Positives = 392/880 (44%), Gaps = 120/880 (13%) Query: 1 MSDVAETLDPLRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+++ E P + PL G RLIEASAGTGKTF+++ L LRLL + ++ E+ Sbjct: 1 MTNI-EFFQPNKYPLSNGIRLIEASAGTGKTFSLSHLVLRLLT--------EKEYSINEI 51 Query: 60 LVVTFTEAATAELRGRIRSN-------IHELRIACLRETTDNPLYERLLEEIDDKAQA-- 110 LVV+FTEA +E++ RI I + DN L E + I K +A Sbjct: 52 LVVSFTEATASEIKARIIERLILALKIIESINTNVKPYKIDNVLNEWVDLNITSKEKALY 111 Query: 111 -AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 A LL A ++D A + TIHGFC + L A E+G + +D L + ++W+ Sbjct: 112 IASLLLEALERIDNADITTIHGFCSKTLRREAIENGNNLNPTIEKDSYSLINEIVEEYWK 171 Query: 170 RHCYPLPREIAQVVFETWKGPQALL-------RDINRYLQGEAPVIKAPPPDDETLASRH 222 + + + +F++ + L+ D N + +K L + Sbjct: 172 KEILEIEISELKGLFKSNFNRKNLIDVLSSLDNDPNNSFKQTFNDLKIEESLSSQLNNYS 231 Query: 223 AQIVARIDTV----KQQWRDAVGELDALIESSGI-DRRKFNRSNQAKWIDKISAWAEE-- 275 + + T+ Q+ D+ E+ + S GI D + ++ + + +S W EE Sbjct: 232 ESLWIKFTTIWEEKGQELEDSFREIAKDLRSQGIKDTKPYSSKPRKNRYELLSNWIEEYK 291 Query: 276 --ETNSYQLPESLEKFSQRF-------LEDRTKAGGETPR-HPLFEAIDQLLAEPLSIRD 325 + SY+ ++ + ++ F L+ + K + P+ + I L P + Sbjct: 292 EKKRPSYEDIQNQKLINEYFHPKNIYQLDMKHKINACSKEMEPILDIIGDLYDSP---GE 348 Query: 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLD------SALRSE-SGEVLAAAIRTRF 378 LV AL + + + K ++G + + D+L LD +A++ + + + + R+ Sbjct: 349 LVWEHALLWTKRELEKRKSKKGLINYSDLLKLLDPKNQNSNAIKDKVNHNNIYKNLEQRY 408 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 VA+IDEFQDTDP Q R+ ++ + ++ LL+IGDPKQAIY+FRG + TYMKAR Sbjct: 409 KVALIDEFQDTDPVQLRLLKKAFGNRSSHLLLMIGDPKQAIYSFRGGSLNTYMKAREACD 468 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 + ++ N+RS ++ ++NKLF D + + + + L G +P Sbjct: 469 QIHLMNANYRSTKSLILTLNKLFL---DGLIRSNLSTQELNPCSQEDLLE--LNGIKEPF 523 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 + L++ V D + + ++I D + L + ++ + + SDI +LV Sbjct: 524 KILNLIDTNQ-KVKDQRIKLD--SKSKIEDKIPKVIGSYLLELLSNNPKDLNPSDICILV 580 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 +A + L+ + IPS LSN +++F AQ + + +++P + L + Sbjct: 581 NRHDQAKNIHSYLSKIRIPSQLLSN-ENIFTREGAQILQIFINCIVSPHNQQKLALLACS 639 Query: 619 SMMGLN--ALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 +M L ++ D +D + +F +++ G++ L + ++IA+ L+ Sbjct: 640 ELMQWTKEKLIKSKIDGD---FDSLSSKFYELSKLFPTIGLLGCLSNFLEGKSIAD--LS 694 Query: 677 TAGGERRLTDILHISELLQEAGTQLESEHAL--VRWLS----QHI------LEPDSNASS 724 G L D+ S+L+ E + +AL +WLS Q I +P+S S+ Sbjct: 695 NRGT--LLGDLYQSSQLVDEQ-IHRQKFNALRASQWLSSQRFQSIEQIPEEYQPNSAISN 751 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI---------------TNFRVQEQAFYH 769 V I+TIHKSKGL++ +V P++ N + ++ ++ Sbjct: 752 SS---------VNIITIHKSKGLQFKIVICPYLWQKPPDRKSLLWKDNQNLLISKKYKWN 802 Query: 770 DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 ++S D E L E R+ YVA TR+ Sbjct: 803 KKYS-----------SYQDFIRKESLNEAERIAYVAFTRA 831 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%) Query: 945 FPRGASPGTFLHSLFEDLDFT----QPVDPNWVREKLELGGFESQW-EPV--LTEWITAV 997 FP+G GT LH + E +DF Q + E+L + + + EP+ L + I + Sbjct: 991 FPKGPIAGTCLHKILERIDFNDIENQLKVSTIIEEELNIVNISNSFIEPINILLKRIANI 1050 Query: 998 -LQAPLNETGVSLSQLSARNKQVEMEFYLPI---SEPLIASQLDTLIRQFDPLSAGCPPL 1053 L PL + + L+ ++ E++F +PI + P+ +L ++ ++ G + Sbjct: 1051 PLGGPLGK--FKMKNLNTKSSIKELKFDIPICHEANPINTLELSSIFKEDVQNKYGSDYI 1108 Query: 1054 EFM-----QVRGMLKGFIDLVF----RHE-GRYYLLDYKSNWLGED----------SSAY 1093 + G L G ID VF HE ++++LD+KSNW+G S Y Sbjct: 1109 NKLIDLKIHSSGFLTGSIDQVFADNPNHEIAKWWVLDWKSNWIGSSLSKEHRSSCGPSNY 1168 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV-DKE 1149 + M M H Y LQ +Y LALHR+L R+ DY + H GG IY+FLRG+ DKE Sbjct: 1169 SISRMDEEMYHHHYPLQAHIYLLALHRFLNWRLPDYSPQKHLGGYIYVFLRGLPDKE 1225 >UniRef50_Q04UR1 Exodeoxyribonuclease V, beta chain n=4 Tax=Leptospira RepID=Q04UR1_LEPBJ Length = 1054 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 226/890 (25%), Positives = 381/890 (42%), Gaps = 122/890 (13%) Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 E VARE + + +D M+ + +L++ L A+++R+ V +IDEFQDTD QY I Sbjct: 190 EMVAREFKTSEWMSYDQMILQTRDSLKNPH---LCKALQSRYKVGIIDEFQDTDSVQYEI 246 Query: 397 FRRIW----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----YTLDTNWR 448 F +++ + + L LIGDPKQ+IY FRGADI TY++A+ E+ +H +L+ N+R Sbjct: 247 FSKLFLEPNNETEQKILYLIGDPKQSIYGFRGADIGTYLRAKKELKSHKAQEISLNVNYR 306 Query: 449 SAPGMVNSVNKLFSQ----------TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 S P ++ + N+LF + +F I + V + KN + K P Sbjct: 307 SVPELICAYNELFGGKTGEQSFFPIVERSFESTPIEYSEVSAPEKNPKILLSDKHRQGPI 366 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD------ARPVRAS 552 + + ++ D ++ + +I ++ ++ D + + Sbjct: 367 QIVRFIGKDTWKTNDAKNAWGRFIGEEILKLTRSENPFSYQILEESDEKIHFAEKKLNFR 426 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 +I++LV+S+ E +L L IP + ++ ++++ E+ ++ + + ++ P + ++ Sbjct: 427 EIAILVKSKAEGKLAEQSLKLRGIPCSFY-KQEGIYQSPESYQISNIFECLLDPNKPSSY 485 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDVVVE-EFDGYRQIWRKRGVMPMLRALMSARNIA 671 R L + ++ + DEH+ + + D ++ + R + R++ I Sbjct: 486 RKLLLGDLFQIHPDHLVAF--DEHSIESYEKTTLDRWKTLAIDRKFPELFRSIEEDSRIF 543 Query: 672 ENLLAT-AGGERRLTDILHI-SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL 729 T ER+ T+ I +LLQ ++ L +E + Sbjct: 544 LTEDETDIDWERKKTNYGQIFRKLLQFQIANQAGLEEILEELKLLQIESKNEQEPPLFEK 603 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWL--------PFITNFRVQEQAFYHDRHSFEAVLD-L 780 E++K VQI+T+H SKGLE+P+V+L P I ++ V E+ +R+ ++ D Sbjct: 604 ETEKDAVQILTLHSSKGLEWPVVFLFHLSSNFVPEIYDYPVTEKD--GERYWKLSLWDNE 661 Query: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 S + + L E+ RLLYV +TR L P KK SA + Sbjct: 662 EEKKISKEEYSYQSLNENKRLLYVGITRPQVRLYL---PFYTPTNHKK----TKDSAYYK 714 Query: 841 LLQKGEPQDAAGLRTCIEALCDDD----IAWQTAQTGDNQPWQVNDVSTAELNAKTL--- 893 +L LR +E D IAW P N +E+ L Sbjct: 715 IL-------YPRLRHILENEPDPSLFHPIAWTPISFDQTDPNIRNRTRDSEVRLTPLLHC 767 Query: 894 QRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGT 953 + P R+ SYS L+ R + + L+ +A S E T P A+ G+ Sbjct: 768 ESEPSKTIRLHSYSSLKTRAKTSENESLSILE-EAEYFKSDDAEGAETEDALPSSAATGS 826 Query: 954 FLHSLFEDLDFT--QPVDPNWV--------REKLELGGF---ESQWEPVLTE-------- 992 FLH+L E+LDF+ + P V R L F + + L+E Sbjct: 827 FLHALLEELDFSFFKTKTPREVLKNRKVLSRMDFHLNYFRLSKENKKNTLSEKETYQKRA 886 Query: 993 ----WITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 1047 W + PL ++T SL L N+ EM+F+L + DP Sbjct: 887 GEILWNSLNANIPLQDKTSFSLVDLGKENRISEMDFHLSL----------------DPTG 930 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 + +LKG IDLVF + ++Y+ DYKSN L ED S + + + +RY Sbjct: 931 -----------KNLLKGSIDLVFEIKNKFYIADYKSNLL-EDYSPLSLRRSVENTE-NRY 977 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYT 1157 DLQ +Y + L+ YL+ D GGV Y FLRG+ K GIY+ Sbjct: 978 DLQRDIYAMVLYEYLKDLFGPKDVFQKIGGVYYFFLRGM-KHGENSGIYS 1026 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 37/118 (31%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 IEASAGTGKT+TI + ++ L+G G PLT ++L++T+TE A EL+ R+R Sbjct: 13 FIEASAGTGKTYTIMEI-VKDLIGEHGI-----PLT--QILILTYTEKAAGELKERLR-- 62 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 K A L R++D+ + TIHGFC +L Sbjct: 63 ---------------------------KKLIASDLTKEARELDQVTISTIHGFCNMIL 93 >UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Actinomycetales RepID=C1RHS1_9CELL Length = 1794 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 239/848 (28%), Positives = 355/848 (41%), Gaps = 148/848 (17%) Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFP--VAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 +DD+L+ L AL ++ AAA R R P V M+DEFQDTD Q++I R +H Sbjct: 233 YDDLLTLLRDAL-TDPATGAAAAERVRAPYRVVMVDEFQDTDQVQWQILRTAFHGH--RT 289 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L+LIGDPKQAIYAFRGAD+ TY++AR V TL +WR+ +++ + L A Sbjct: 290 LVLIGDPKQAIYAFRGADVHTYLEARG-VATTATLGRSWRTDAPVLDGLAHLMGGA--AL 346 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 I PV++A + L + P + + + + G G + V + RD Sbjct: 347 GDPRIVVHPVEAAHTERRL------DGGPPVLVRRVTRRAVGAGSAAPKVDTVRSVVHRD 400 Query: 529 WLQ--AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 + L +GD RPV D++VL R +A VR+AL + +P+V +S S Sbjct: 401 VAARVVLTLTHSRLRDGDAWRPVLPGDVAVLARRNADALAVREALAAVGVPAV-VSGLSS 459 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 VF T A++ L LL A+ + +A T +G +A + ++ + + + + Sbjct: 460 VFTTAAARDWLVLLSALAATGDTARVAAAALTPFVGWDATRLAGASDAQR--EDLADRMR 517 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEH 705 + + +GV L +A + E L A GER LTD+ H+ E+L A Sbjct: 518 TWSHVLAGQGVA-ALLQATAAAGLHERLAARVDGERVLTDVRHVGEVLHAAARDAGLGAA 576 Query: 706 ALVRWLSQHILEPDSN-ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 AL WL I E + A + RLE+D VQ+VT+H +KGLE+P+V +PF + V Sbjct: 577 ALTEWLRARIDEAAVDYAEERSRRLETDAAAVQVVTVHAAKGLEFPVVMVPFAWDRWVPR 636 Query: 765 QAF---YHDRHSFEAVLDLNAAPESVDLA----EAERLAEDLRLLYVALTRSVWHCSLGV 817 YHD + D A +AE EDLRL YVALTR+ L Sbjct: 637 DPSVLRYHDDDGTRRLHVGGRGSPGYDEARARHQAEEAGEDLRLAYVALTRASSQVVLWW 696 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA------- 870 AP T A+GRL+ +DA GL + DD A Sbjct: 697 AP----------STVSASGAVGRLVLGA--RDADGLPPDTVPVPRDDQAAAGFDALAAGS 744 Query: 871 ------QTGDNQP----WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH--GIAQ 918 +T D P W+ L L R WR TSYSG+ H G A Sbjct: 745 GGTVVHETVDAAPPVVRWEPVRGEPGPLEVARLGRGVDLTWRRTSYSGITAAAHDAGPAG 804 Query: 919 DLMPRLDVDAAGVASVVEE-----------PTLTPH------------------------ 943 +P D GV E+ PT PH Sbjct: 805 PSVP----DRPGVTDEPEDPGIQDETDGPAPTPPPHAGAGDEPDLAVLAATTPDPALVAA 860 Query: 944 ---------QFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQ-------WE 987 P G + GT +H + E++D T D +R +L E+ + Sbjct: 861 LRAVRSPLADLPGGTAFGTLVHHVLENVD-TAAAD---LRGELRARCAEAAGGGGGLGLD 916 Query: 988 P-VLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPIS----EPL--------- 1031 P L + + + P G +L+Q+ ++ E++ LP++ +P Sbjct: 917 PDALADALLPSMHTPAGPLLGGRTLAQVPPHDRLAELDLELPLAGGDLDPAGRRPATLAD 976 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQ---------VRGMLKGFIDLVFR----HEGRYYL 1078 +A LD + DP +A L ++ +RG L G ID V R + RY + Sbjct: 977 VADLLDAHLDPDDPFAAYAGRLRWLHADPGTRPAALRGYLTGSIDAVLRVDVDGDTRYVV 1036 Query: 1079 LDYKSNWL 1086 ++YK+N L Sbjct: 1037 VEYKTNRL 1044 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 90/177 (50%), Gaps = 22/177 (12%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V E PL G ++EASAGTGKTFTIAAL R + G A P ELL Sbjct: 1 MTAVFEVCGPLP---AGTTVLEASAGTGKTFTIAALAARYV--AEGHALLP------ELL 49 Query: 61 VVTFTEAATAELRGRIRSNI----HELRIACLRETTDNPLYERLLEEIDDK--AQAAQWL 114 +VTF AT+ELR R+R+ + LR R + D + R L ++DD A+ L Sbjct: 50 LVTFGRTATSELRDRVRARLVATERALRDPAARTSDD--VLVRHLADVDDAELARRRDRL 107 Query: 115 LLAERQMDEAAVFTIHGFCQRMLN-LNAFESGMLFE--QQLIEDESLLRYQACADFW 168 +A Q+D A + T HGFCQ+ML L G + E L+ D + L + D + Sbjct: 108 TVALSQVDAATITTTHGFCQQMLRALGTTTGGGVVEPGATLVPDVADLEAEVVDDLY 164 >UniRef50_Q7U7R4 Probable exodeoxyribonuclease V, beta subunit RecB n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U7R4_SYNPX Length = 1186 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 234/860 (27%), Positives = 364/860 (42%), Gaps = 113/860 (13%) Query: 347 GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE 406 G + F +L+ +D ++ ++ R+ M+DEFQDTDP Q+R+ +R + Sbjct: 363 GTVSFAGLLTAMDPG---DAEASWLEPLQQRYRAVMVDEFQDTDPVQWRLLQRSFGGGSH 419 Query: 407 TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 LLL+GDPKQAIY FRG D+ TY +AR V TL+ N+R+ P ++ +N L + Sbjct: 420 L-LLLVGDPKQAIYRFRGGDLDTYRRARGLVSRIDTLEDNYRTTPPLMAGLNALMAPGLP 478 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 E+P + ++A V QP + + G ++ + A + Sbjct: 479 ESRL-EVPAVHARTARSAA----VLPEGQQPLQLLQFEQDLPAGKTAIEAAVPPAVAEVV 533 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASD-ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 LL+ +P + D + +LV +AA +R AL +P+ ++ D Sbjct: 534 MQ----------LLIE----QPALSPDQLCILVSRHDQAADLRRALAERGVPTRLVAQGD 579 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 V ++ A M LL A+ P + LR A+ ++G +A + D + Sbjct: 580 -VLDSDAALMMQHLLDALAAPADDRRLRLLAASPLVGWSADQLRCEAQDP--------QL 630 Query: 646 DGYRQIWRKRG-VMPMLRALMSARNI--AENLLATAGGERRLTDILHISELLQE----AG 698 D Q R+ +P L L + AE + R L D+ + L+QE G Sbjct: 631 DALAQRLRQAADQLPRLGLLGCLSGLLDAERTAGLSDEGRMLGDLQQAARLVQEEMHRQG 690 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI- 757 L + +R Q + P +++ + + V +VT+H+SKGLE+PLV P++ Sbjct: 691 LDLAAAALWLR--RQRLHPPSPLPPAREPHSDLAESAVAVVTVHRSKGLEFPLVICPYLW 748 Query: 758 ---TNFRVQEQAFYHDRHSFEAVLDLNA----APESVDLAEAERLAEDLRLLYVALTRSV 810 R + D + + LN + AE++AE RL YVA+TR+ Sbjct: 749 AGAKEARYVTGPLWRDGAAGGWRIALNRDWGLGWTVWQRSHAEQVAEAERLAYVAVTRAR 808 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 870 L A QS L L +G DA LR L + + Sbjct: 809 SQLLLLWARCA-----------PQQSVLQHWLFEG---DADTLRDL--PLSHRPLKPEVG 852 Query: 871 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR---LDVD 927 Q Q W+ T QR+ +W +SYS A R + + Sbjct: 853 Q----QRWRPPHRQETLAIGATPQRI-DRSWGRSSYSAWIAAPAAEALLEQGRDQDPEAE 907 Query: 928 AAGVASVVEEPTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVDPNW---VREKLELGGFE 983 A + E P P FPRGA+ G LH + E L F +W + ++L+ G Sbjct: 908 EVTAAGLEEWPDRGPLADFPRGAAAGDCLHRMLEQLPFQ--CSGDWGHVIEQELQRSGLS 965 Query: 984 SQWEPVLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 W + + + VL PL + LS L+ + E+ F LP+ ++ D L+ Sbjct: 966 LDWREAVEQGLQQVLDTPLGGPLAALPLSALTPDRRLHELSFDLPVRH----ARTDDLVE 1021 Query: 1042 QF--DPLSA----GCPPLEFMQV--RGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGE 1088 F DP + L +QV RG L G IDLVF + R+++ D+KSNW+GE Sbjct: 1022 AFRLDPEARFGRDYIDQLSSLQVNSRGFLTGSIDLVFSDAADPLQARWWVADWKSNWIGE 1081 Query: 1089 DSSA----------YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 Y Q AM M+ H Y LQ LY +ALHR+L+ R+ Y E H GG Sbjct: 1082 RGEPGSPSCCGPRHYDQVAMEEQMRHHHYPLQAHLYLVALHRHLQWRLPGYVPERHLGGY 1141 Query: 1139 IYLFLRGVDKEHPQQGIYTT 1158 +Y+FLRG+ P Q I ++ Sbjct: 1142 VYVFLRGM----PGQSIGSS 1157 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 88/163 (53%), Gaps = 20/163 (12%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 DP R PL G RL+EASAGTGKTF +A L LRL+ AA P P LLVVTFT+ Sbjct: 3 FDPNRYPLDPGLRLLEASAGTGKTFALAHLTLRLI----SEAAMPLP----SLLVVTFTD 54 Query: 67 AATAELRGRIRSNIHELRIACLRETTDN---PLYERLLEEIDDKAQAAQ----WL---LL 116 AA AELR RI + + +A L P + +L++ +A Q W+ L+ Sbjct: 55 AAAAELRSRIGQRLQDA-LAGLEAVARGDALPKADSVLQQWWQQAPQGQSRRDWISRVLM 113 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL 159 A Q+D A + TIHGFC R L A SG +QQL D + L Sbjct: 114 ALEQLDAADITTIHGFCSRSLRRQAINSGAAMQQQLETDATAL 156 >UniRef50_C9RQA8 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA8_FIBSS Length = 1266 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 231/943 (24%), Positives = 402/943 (42%), Gaps = 185/943 (19%) Query: 350 GFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 F+DM+ + A+ +S+ L +R ++ A+IDEFQDT+ Q+ IF ++ Sbjct: 354 SFNDMILSVHQAVLDKSKGESPLKTRLRAQYTYAIIDEFQDTNQLQWDIFSAVFDK---- 409 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 + ++GDPKQ+IY+F+GAD+ Y KA +++ +L TN+RS G+++ N LF +D+ Sbjct: 410 -IFVVGDPKQSIYSFQGADVNVYQKAIQKINNGMSLKTNFRSTKGIIDGCNDLF---NDS 465 Query: 468 FMFR-----------EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 F F+ E P K G+ +AL + E P +W+ + + Sbjct: 466 F-FKPYEGSPKLVDFESSLSPDKE-GQVKALPQINGKEVAP---IWISQQNIDEID---- 516 Query: 517 TMAQVCAAQIRDWLQ-AGQRGEALLMNGDDA---RPVRASDISVLVRSRQEAAQVRDALT 572 AQ +I +W G + + + D R V D +VL R+R E ++ DA+ Sbjct: 517 -FAQATVQKIVEWCSFVGDKTVLQVFDKKDCTKLRNVSFKDFAVLARTRSEMDEIEDAMR 575 Query: 573 LLEIPSVYLSNRDS-VFETLEAQEMLWLLQAVMTPE----RENTLRSALATSMMGLNALD 627 +P + +DS +F + E E + L +A+ P+ L AL T ++ + Sbjct: 576 AAGVP--FSRYKDSNLFSSRECTEWIALFKAIDAPDFSAWNRRLLSEALITDFFRISYQE 633 Query: 628 IETLNND--EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 IE + ++ + + V ++ + + ++ +KR ML + S I E L + +L Sbjct: 634 IEYVESEAFDDPENPVRKKINSWHELVQKRRYAEMLERIYSDTQIEERLTEIS----KLQ 689 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDS-NASSQQ-----MRLESDKHLVQIV 739 ++ + ++ A L + + + L +H+ S NA + + +D VQI+ Sbjct: 690 NLAKLRQIGNYAVEYLYNHNCSIEDLVRHLEALASYNAGTDDEDGNLIEKSTDYDAVQIM 749 Query: 740 TIHKSKGLEYPLVW--LPFITNFRVQEQAF-YHDRHSFEAVLDLNAAPESVDLAEAERLA 796 TIH SKGLE+P+V F + F YHD+ E L + +A+ R Sbjct: 750 TIHASKGLEFPIVISVAGFKQKIKTDSGPFLYHDKD--EIRLGFGS------IAKKRRAQ 801 Query: 797 EDL----RLLYVALTRSVWHCSLGVAPLVRR---RGDKKGDTDVHQSALGRLLQKGEPQD 849 E+L RL YV TR+ S+ + P + + + K + +S++ L++ E +D Sbjct: 802 EELEEWKRLFYVDFTRA---SSILILPRYEKWYGKDNVKEEFKFLESSINELIKADEKRD 858 Query: 850 A-AGLRTCIEALCDDDIAWQTAQTGDNQPWQV--------------------NDVSTAEL 888 + L T + L W+ + D+ ++ +++ ++ Sbjct: 859 SDKKLTTVLPKLE----KWEPKKLSDDVKTKILKPLNEKSGAGAVLTSEEIAQNIAQQKI 914 Query: 889 NAKTLQ-RLPGDNWRVTSYSGLQQRGHG-IAQDLMPRLDVD----AAGVASVVE------ 936 N +LQ +L G + SYS L + I D R D D A S V+ Sbjct: 915 NMASLQKKLAGASIMQHSYSTLSGKADSQIESDDGNRPDRDDEEKTAAKTSTVKIRDIDT 974 Query: 937 ---------EPTL--------TPHQFPRGASPGTFLHSLFEDLDFTQPVDPN-------- 971 P L T +FPRG+ G LH +FE+ F Q + N Sbjct: 975 EAKNCTTAFNPKLNYQTNLNETAKKFPRGSHAGNALHRIFENTKFKQFGEENSTFEQALA 1034 Query: 972 -----------WVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVS--------LSQL 1012 + RE L + W + T + L A L E S L+ + Sbjct: 1035 NPKTINLIEEEFKRESLPIWNHREAWLDIATHYTWNTLNARLPEIAGSTTTSETFALTDI 1094 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVF-- 1070 + E++F SE +Q + D L C KGFIDL+F Sbjct: 1095 PENDHMPEVQFNQDASEETDENQAISETSASDILRRFC------------KGFIDLLFVR 1142 Query: 1071 --RHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH---- 1124 + Y +LD+KS+ L +++ YT +A+ + + Y +Q LY+ L ++L+ Sbjct: 1143 TVNSQKYYSILDWKSDML--ENNVYTPEALKEKVD-NDYSIQRVLYSYCLIQWLKQFYGK 1199 Query: 1125 ----RIADYD-YEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 +++ + +E HFGG+ Y F+RG + P +GIY N+ Sbjct: 1200 GTTENLSEAEIFEKHFGGIYYAFIRGTEGGTP-KGIYAQTWNS 1241 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 16/139 (11%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 IEASAGTGKT+TI L + L+ LG PL +++L+VT+TE A EL+ RIR Sbjct: 16 FIEASAGTGKTYTIQ-LMVSKLIKLGT------PL--KKILIVTYTEKAAGELKDRIRKK 66 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I E+ I + +D+ EE A+ A A + +D AA+FTIH FCQ+ L Sbjct: 67 IDEVLINRKIDKSDDS------EEPLSDAKIA-LFTKAYQDVDNAAIFTIHSFCQKALKE 119 Query: 140 NAFESGMLFEQQLIEDESL 158 A+++G F +I+D+ + Sbjct: 120 FAYDAGRPFNMSMIDDKEV 138 >UniRef50_O84645 Exodeoxyribonuclease V beta chain n=9 Tax=Chlamydia RepID=EX5B_CHLTR Length = 1026 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 282/1200 (23%), Positives = 492/1200 (41%), Gaps = 264/1200 (22%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + G+ +EASAGTGKTFTI + LR LL GS + +LVVTFT AAT EL+ Sbjct: 13 VSGKFFLEASAGTGKTFTIEQVVLRSLLE--GSIE-----QTKNILVVTFTNAATNELKL 65 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ----MDEAAVFTIH 130 RI++++ + ++ + +P L I + L + R +DE +FTIH Sbjct: 66 RIQASLKQ-ALSLFSQALSHP-GTPLPPYISSSETKVKQLYMKIRNSLATLDEMNIFTIH 123 Query: 131 GFCQRMLN-----LNAFESGMLF-EQQLIEDESLLRYQACADFWRRHCYPL---PREIAQ 181 GFC+ L + + +F E Q I+ Q D+ R++ + P++ A Sbjct: 124 GFCRFTLEQHFPWIQPIQPSSIFSEPQTIQ-------QHILDYLRKNLWDTVLSPKQYAF 176 Query: 182 VVFETWKGPQALLRDINRYLQ--GEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 + + Q I R LQ P + P L+ ++ A + + + Sbjct: 177 LSYHHRATTQQTRHLIERLLQDYTSTPNLALSP-----LSITLQKLKAWVSRYQHLAPLS 231 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDK-ISAWAEE-ETNSYQL-----PESLEKFSQR 292 + E+ A +F +S+ + I++ + A+ ++ ETN Y L P ++KF + Sbjct: 232 LEEMQAF-------SLRFKQSDLS--IERELPAFVQQFETNPYSLDMLFFPGMVQKFQEE 282 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 + + +P P F+ QL A P ++ + L +++ + + D Sbjct: 283 NRNKKKLSAPASPLDPFFQDWIQL-AHPFCQKEPIFHTLLKSVQQHLKTHCAQ--SYSHD 339 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA--LL 410 + ++ L+S L + + + +R +F + +IDEFQDTD +Q++IF +++ P+ + L Sbjct: 340 ESIATLESLL--AHNDTVVSQLRKQFQLVLIDEFQDTDKRQWQIFSKLFA-SPDYSGSLF 396 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 LIGDPKQ+IY +R AD+ TY++A+ A LDTN+RS P ++ ++N LFS Sbjct: 397 LIGDPKQSIYEWRNADLPTYLQAKHSFPKEAQLILDTNYRSTPELMQALNHLFSLPTP-- 454 Query: 469 MFREIP----FIPVKSAGKNQ-------ALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 F E P + P+ S G + + F F E +W+ + Sbjct: 455 -FLETPQNILYHPLHSKGSAEISYSEFSPIHF-FSSEDIQEETLWISK------------ 500 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 A+ +R A + +++VLV Q+ Q +T IP Sbjct: 501 ----TASYLR-----------------SAYSIPFGNMAVLV---QDYPQALKLITHSTIP 536 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637 Y + T ++ LL+A++ PE + +++ L + + L++ +I +H Sbjct: 537 MAYCKEKRIFDRTESPYLLILLLEALLYPENQQKIQAILMSRLFQLSSTEIH-----QHL 591 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMS----ARNIAENLLATAGGERRLTDILHISEL 693 F R ++ ++ LM ++ I E LL T G+ ++ + Sbjct: 592 KTFSSLFFTLNRHLYH-YSLLATFYKLMGENVLSQTIGETLLQTPLGDIIFQELEALCLY 650 Query: 694 LQEAGTQLESEHALVRWLSQHI---LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 L + T H L+ ++ I + + + SSQ +D+++++I T+H SKGLEY Sbjct: 651 LDK--TTENPHHKLLHLINILITGKYDEELSFSSQ----SNDENMIKITTVHSSKGLEYD 704 Query: 751 LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 +V+ LN A E + +R +YVA TR+ Sbjct: 705 VVFCS-----------------------CLNKAKEKTP-------SVHMREMYVACTRAK 734 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 870 + +P+ +R K SAL + L +E L Sbjct: 735 KFLFIPFSPIEKRSLSTKK-----LSALANYANVTKHHSVPHL---VETLTSSS---PEL 783 Query: 871 QTGDNQPWQVNDVSTAE-LNAKTLQRLPGDNWR-VTSYSGLQQRGHGI--AQDLMPRLDV 926 + QP + + E L +T LP R + S+S + H Q+L P L Sbjct: 784 FSSSFQPPESSLTPDRERLPQQTYFSLPHLPSRTIHSFSSTVENLHFSEPIQELSPSL-- 841 Query: 927 DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQW 986 FP G+ GT +H L E L G F + + Sbjct: 842 -----------------LFPGGSLTGTLIHKLLESLA----------------GNFAACF 868 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 E + + T + PL E Y E +IA ++ T+ P Sbjct: 869 EEIFNKAQTLLKNTPL-------------------EGY----ESIIAEKICTVFSTTLPF 905 Query: 1047 SAGCPPLE-------------FMQVRGML-KGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 S+G L +Q G L +G +DL F H+ R++++D+K+++LG+++S Sbjct: 906 SSGSFALRNVHPHNIRAEETFLLQEEGELWQGIVDLFFEHKDRFFIIDWKTSFLGDETSC 965 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI-----YLFLRGVD 1147 Y+ + +Q D Q +LY A R+L H F ++ ++F+RG+D Sbjct: 966 YSPDQLHLYIQRQGLDRQERLYRKAAKRFL----------HQFNSLLQVEMAFVFIRGLD 1015 >UniRef50_C8NA25 UvrD/REP helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA25_9GAMM Length = 1287 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 236/895 (26%), Positives = 368/895 (41%), Gaps = 136/895 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ E L +PL+G LIEASAGTGKT+T+ + LRLL+ G +P E++ Sbjct: 1 MNTTTEPTPALEIPLEGRALIEASAGTGKTWTLTGIILRLLIEGG----YP----PREII 52 Query: 61 VVTFTEAATAELRGRIRSNIHELR-----IAC--LRETT----DNPLYERLLEEIDD--- 106 TFT A AE++ R+ +H LR IA L E T D+ L RL + I Sbjct: 53 ATTFTRKAAAEMQQRVHKRLHALRENLKAIAARYLAEETVLNDDDGLATRLDDIIGGSGG 112 Query: 107 ---------KAQAAQWL--LLA--------ERQMDEAAVFTIHGFCQRMLNLNAFESGML 147 A A L L+A + ++DE + TI CQR L A E+G Sbjct: 113 DLINRHLILNAVAKHGLDGLIAIFSRVESLQARLDELFIGTIDSLCQRWLAEFALETGND 172 Query: 148 FEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPV 207 Q+ E+ L + D RR L E Q ET+ +L D Y +A + Sbjct: 173 ERLQINENSPALE-ETIHDTLRR----LLHENHQHDPETFA---QMLAD-GAYHDSDAYL 223 Query: 208 IKAPPPDDETLASRHAQIVA----------RIDTVKQQWRD----AVGELDALIESSGID 253 A E + RHA I + R + +Q R+ + + A+I++ Sbjct: 224 AAA----REATSHRHAAIDSGDVSADYSRDRHQALTRQLRELDAAVIADWQAMIDAPEFA 279 Query: 254 RRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR-----TKAGGETPRHP 308 + K D + ++ + E + F + R T HP Sbjct: 280 AAVAKNAAWYKQRDALPQLLQQLHQELPFNDRTEALASGFGKPRISSKQTALTAAFTAHP 339 Query: 309 LFEAIDQLLAEPLSIRDLV-------ITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 I LLA + ++ + I L +R+T + RGE F + +R++ A Sbjct: 340 FTLLIRDLLAARDARQNHLDHHKRQTIASLLETVRQTYPQALEARGETTFSEKTARINEA 399 Query: 362 L-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW----HHQPETALLLIGDPK 416 L + G LA + R+PV ++DE QD + +Q + R + + LLL+GDPK Sbjct: 400 LAHPQHGTNLAHYLTRRYPVMLVDESQDLNDEQAALLERTYLREDGERKHGFLLLVGDPK 459 Query: 417 QAIYAFRGADIFTY--MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP 474 QAIY FRG D+ Y +K R + LDTN RS+P ++ ++N+ + Q D+A + +I Sbjct: 460 QAIYGFRGGDVANYNRLKTRFRPDEQHRLDTNRRSSPNLIAALNEHYLQDDNARLGTDIT 519 Query: 475 FIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 + ++A Q + G W G + Q + AA + Sbjct: 520 YHEAQAANPAQTI-LAADGSPIARPMQWTHSGTN------QDSETDTIAALV-------- 564 Query: 535 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 A L +G P DI +L+RS +++ L I S +R SVF A+ Sbjct: 565 ---ARLTDGTGIAP---RDIQILMRSNSSLETLQNKLHAQHIDSERSHDR-SVFTGAVAR 617 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL----------NNDEHAWDVVVEE 644 LL A+ PE + L+ G + D++ L DE + E Sbjct: 618 TFADLLAALEQPEHRDRQNRLLSGLYYGYSQQDLDRLAAIEQGEIPARADELTLAELREA 677 Query: 645 FDGYRQIWRKRGVMPMLRALMS--ARNIAENLLATAGGE--RRLTDILHISELLQEAGTQ 700 W+ G++ L L++ NI + L + + R L D+ HI +L E + Sbjct: 678 LTQAHDAWQSWGLLAALNPLLTHEKHNIWQTLASCPAPDNLRHLLDLRHIQTILAEHAPK 737 Query: 701 LESEHALVRWLSQHILEPDSN-ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 W +Q PD++ A + + ++ V ++TIHK+KGLE P+V L +N Sbjct: 738 QRPAQFGAWWRAQLAAPPDADWAKAPPL---PGQNAVHLLTIHKAKGLEAPVVILATGSN 794 Query: 760 FRVQEQA-----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 + Y D + L A P + + + E E RLLYV LTR+ Sbjct: 795 HKGGGANPVPTWRYRDGDTIRISL---AKPANTPIDQQEN-EEQRRLLYVGLTRA 845 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 128/264 (48%), Gaps = 23/264 (8%) Query: 925 DVDAAGVASVVEEPTLTP-----HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLEL 979 D+ VA+ P P + +PRG +PG+ LH++ E + +P + R LE Sbjct: 1028 DLADYAVATPQNAPDAPPDADIRYTYPRGTAPGSALHAVLERI---RPDNRRDWRRYLEH 1084 Query: 980 G------GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033 G E W+ A+ L ++ +SL + E F L S+ +A Sbjct: 1085 DNRQWQLGLEPAQLDACENWLEAIQYCELPQSRISLGTSKQGAHRSEYGFTLG-SDARVA 1143 Query: 1034 SQLDTLIRQFDPLSAGCPPLEFM----QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 + + F +A PL +R L+G ID +++H+GRYY+LDYK+N LG Sbjct: 1144 LDIPAINAHF---AAHGHPLHLSDKHRHIR-YLRGEIDHLYQHDGRYYILDYKTNHLGNS 1199 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 + YT + + AAM H Y LQ LY +ALHR L+ R+ADYD H GG+ YL+LRG+D Sbjct: 1200 PADYTPENIRAAMGDHHYWLQAALYQVALHRLLQTRLADYDPARHLGGIEYLYLRGIDPA 1259 Query: 1150 HPQQGIYTTRPNAGLIALMDEMFA 1173 HP G Y IA +D + Sbjct: 1260 HPANGKYGWNYPPEFIAGLDRILG 1283 >UniRef50_UPI0001699643 ATP-dependent exoDNAse beta subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699643 Length = 187 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 6/178 (3%) Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 A A + +AR K R +L FDD+L R+ AL+ ESG AAA+R RFPVAMIDEFQDTD Sbjct: 10 AHAYLLSELARRKEERRQLYFDDLLRRMQQALQGESGGRFAAAVRRRFPVAMIDEFQDTD 69 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA---HYTLDTNW 447 P QY+IF I+ + + AL +IGDPKQAIY+FRGADIFTYM+AR E + YTLDTNW Sbjct: 70 PLQYQIFSGIYPGEADNALFMIGDPKQAIYSFRGADIFTYMQARRETASAGTQYTLDTNW 129 Query: 448 RSAPGMVNSVNKLFSQT--DDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 RSA +V+ VN LF + F++ +I F PV ++ GE P ++ W Sbjct: 130 RSASALVSCVNALFGHKRLESPFIYEPDIQFQPVNASTTADQAPLRLAGEAVPPLQFW 187 >UniRef50_D0LU04 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU04_HALO1 Length = 1284 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 146/502 (29%), Positives = 245/502 (48%), Gaps = 53/502 (10%) Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEV----LAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 +K R G+ F DML + +L ++ + L A +R R+ A+IDEFQDTD Q++IF Sbjct: 365 DKNRYGQFDFQDMLRLVWESLDMDASQAIEDSLRARLRERYRYALIDEFQDTDELQWKIF 424 Query: 398 RRIW-----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----YTLDTNWR 448 +++ P+ L +IGDPKQAIY+FRGAD++TY++AR V L N+R Sbjct: 425 GQLYLGGPDEPPPDNRLCIIGDPKQAIYSFRGADVYTYLEARERVQERGGQITNLVDNYR 484 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFI-PVKSAGKNQA----------LRFVFKGETQP 497 S +V + N +F+ + EI + PV++A A +R + Q Sbjct: 485 STDALVRAYNTVFASR---YFSGEIRYDHPVRAATDLTACGPDGRAITPIRLLHVKPEQG 541 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISV 556 ++ ++ + + + AA++ L G A+ + DA RPVRA D+ V Sbjct: 542 KLRAEIL----------RQALLERIAAEL--GLLLGDPAHAIAVGPPDAPRPVRAGDVFV 589 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L R+ +E+ +V D L IP + ++ + +T EA+E+ +L + P R + A Sbjct: 590 LTRTTRESNEVADRLRQAGIPCA-IYKQEGLLQTREAREVRDVLCGIAEPRRRSARFQAW 648 Query: 617 ATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 T G D+ L + + ++ ++ + + + +++ I E L Sbjct: 649 TTRFFGATLSDLPYLADLPETHPFLARLYE-WKALAERLEYETLFTSILGDSGIIERELF 707 Query: 677 TAGGERRLTDILHISELLQEAGTQLESE-HALVRWLSQHILEPDSNASSQQ---MRLESD 732 ER LT+ LHI ELL+E + + H L+ L + I++ + + R+ES+ Sbjct: 708 LESSERALTNFLHIFELLREEVVRSRCDLHELIARLERWIVDTAEGTQADERNIQRMESE 767 Query: 733 KHLVQIVTIHKSKGLEYPLVWL-PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE 791 + VQ++TIH+SKGLE +V+L + E YH+ E ++ + A D+AE Sbjct: 768 EAAVQVMTIHRSKGLEAKIVFLYGGFSAMPGDEVQVYHE--GSERLVHVGGAARR-DVAE 824 Query: 792 AERL---AEDLRLLYVALTRSV 810 A R +E RL YVA+TR+V Sbjct: 825 AVRRESESESQRLYYVAITRAV 846 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 25/154 (16%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 LDP R +++EASAGTGKT+ I + LLL S P +E++LVVTFTE Sbjct: 40 ALDPER-----HQVVEASAGTGKTYLIEHRVVDLLL----STDTP----IEQILVVTFTE 86 Query: 67 AATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 ATAELR R+R I +A R+ T D P + ID A+A + L A D Sbjct: 87 KATAELRFRVRRLIEN--VAAARQHTAAEDAPHWR-----ID--AEARRKLTDAMLGFDR 137 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES 157 AA+ TIH FCQR+L NAF S LF Q + E+ Sbjct: 138 AAIHTIHAFCQRVLTENAFSSRRLFAQTQVAGEA 171 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 35/255 (13%) Query: 944 QFPRGASPGTFLHSLFEDLDFTQPVDPN----WVREKLELGGFESQW------EPVLTEW 993 + P G G FLHS+ E L F + + W E+ E+ + +P + Sbjct: 1036 ELPGGPQSGVFLHSVLEHLPFASLAEADGFDDWC-ERPEVASVFADLMLRHGRDPAHLRY 1094 Query: 994 ----ITAVLQAPLNETGVSLSQLSARNKQV-EMEFYLPISEPLIASQLDTLIRQFDPL-- 1046 + L PL + L++ ++ + E+EF PI P +A + Sbjct: 1095 SQRVVYQCLSTPLRVGRKIVPNLASCSENLRELEFVYPI--PQLAPRSSDSAAAAAAQAS 1152 Query: 1047 ---SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 + G P+ RG +KG IDLVF+ +GR YL+D+KS+ L ++Y+ +A+A + Sbjct: 1153 ASATTGRDPVRVE--RGYIKGIIDLVFQFQGRAYLIDWKSDIL----ASYSNRAVARRVY 1206 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV----DKEHPQQGIYTTR 1159 + Y LQ QLY LAL + L ++ + FGG++Y F+RG+ D E G+Y R Sbjct: 1207 ST-YRLQAQLYALALVKMLGIE-SESQHRRRFGGLLYCFVRGMSTFADDEGRLPGVYYAR 1264 Query: 1160 PNAGLIALMDEMFAG 1174 P IA + AG Sbjct: 1265 PRLDDIAAFERALAG 1279 >UniRef50_Q4FSN0 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Psychrobacter RepID=Q4FSN0_PSYA2 Length = 1495 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 131/474 (27%), Positives = 229/474 (48%), Gaps = 76/474 (16%) Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW---- 401 RGE F ++RL+ AL GE LA IR +PVA+IDE QD + +Q + I+ Sbjct: 504 RGETTFSLQMARLNQALTGRQGEKLARYIRHHYPVALIDESQDINGEQAIMIESIYLPKS 563 Query: 402 ------HHQPETA-------LLLIGDPKQAIYAFRGADI--FTYMKARSEVHAHYTLDTN 446 + +P + LLL+GDPKQAIY FRG D+ + YMKA+ E + +TLD N Sbjct: 564 KRKQLANDKPLSTNKVSHEFLLLVGDPKQAIYGFRGGDVANYNYMKAQFEKSSLWTLDIN 623 Query: 447 WRSAPGMVNSVNKLF-------SQTDDAFMFREIPFIPVKS-AGKNQALRFVFKGETQPA 498 RS G+++++N F ++ A + I + +K+ +NQ F Sbjct: 624 RRSNAGVIDALNCWFGMPTVTTAENKLAQLGSSIYYQHIKADKPENQLSWFNDLTVQNST 683 Query: 499 MKMWLMEGESCGV------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRAS 552 + ++ + V + + ++ A I L +GQ + G +P++ S Sbjct: 684 LVTEILSAQPVSVLHLPYDKELEYDEHEITARHIATLLGSGQT-----LKG---KPIQPS 735 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 DI VL R++++ +V D L L +P++ S+ S+FET+ A+++ LL A++ P R + + Sbjct: 736 DIGVLARTKKDLKRVEDELLKLNVPTLTTSDV-SIFETIMAEDVAALLSAMLYPYRHDMI 794 Query: 613 RSALATSMMGLNALDIETLNNDE--------------HAWDVVVEEFDGYR--------- 649 L + + GL+ ++ + D H+ V+ D + Sbjct: 795 NRVLTSHLYGLSIKAVKAMMTDHESGVTESGDTIISTHSNSTNVKAVDNKKSYQDFITYL 854 Query: 650 ----QIWRKRGVMPMLRALMSA-----RNIAENLLATAGGERRLTDILHISELLQEAGTQ 700 Q W+ G++ L L+ + + + L A G R + D+ H+ ++L + G Sbjct: 855 KQAAQNWQHFGILSALHYLLDKNPVQPQGVWQALAAHPEGARHIMDLRHMMDVLAQYGIG 914 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 + EH L+ W Q+I ++ ++Q L ++ VQ++TIHKSKGLE+P+V++ Sbjct: 915 M-GEHELLAWFRQNIEAAPNSDWAKQYPLPTESG-VQLMTIHKSKGLEFPIVYV 966 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 116/239 (48%), Gaps = 37/239 (15%) Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDPNWVREK---------------------------- 976 F +GA+ GTFLH +FE +DF+ + V ++ Sbjct: 1205 FVKGANAGTFLHEIFEKIDFSNKSQWSQVIDRAVSSYQLPLVYSSAEQQSRLLQAKKKED 1264 Query: 977 ---LELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033 ++L ++ L WI VLQAPL + L + A + E+EF + +SE A Sbjct: 1265 SRPVDLNSIDATKHEALIGWIEEVLQAPLLASNQPLQSIHAEQRFAELEFNMGLSESFKA 1324 Query: 1034 SQLDTLIRQFDPLSA----GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 ++ L +Q+ P A P + L+G IDLV+ H G+YY++DYKSN+LG Sbjct: 1325 QDINRLFQQYLPNEADKHVNLVPQNKTHLYRYLRGEIDLVYEHAGKYYVVDYKSNYLGNS 1384 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY--DYEHHFGGVIYLFLRGV 1146 Y + + AM Y LQ +Y +ALHR+L RI+DY + + + G V Y+FLRGV Sbjct: 1385 LIDYDESTLKQAMSKAGYWLQAAIYQVALHRFLAMRISDYSGNEDKYLGAVEYVFLRGV 1443 Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 1 MSDVAETLDP-LRLPLQGERLIEASAGTGKTFTIAALYLRLLL 42 MS+ E + P + + L G+ LIEASAGTGKT+T+ + LRLL+ Sbjct: 47 MSEQKENVIPAVDVALTGQHLIEASAGTGKTWTLTGIVLRLLI 89 >UniRef50_Q9Z7G7 Exodeoxyribonuclease V beta chain n=5 Tax=Chlamydophila RepID=EX5B_CHLPN Length = 1050 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 186/774 (24%), Positives = 328/774 (42%), Gaps = 109/774 (14%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 +QG+ +EASAGTGKTFTI + LR L+ GS VE L +TFT A+T EL+ Sbjct: 13 IQGKFFLEASAGTGKTFTIEQIVLRALIE--GSLT-----HVEHALAITFTNASTNELKV 65 Query: 75 RIRSNI----HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAER---QMDEAAVF 127 RI+ N+ EL+ + P Y +D Q + +D+ ++F Sbjct: 66 RIKDNLAQTLRELKAVLNSQPASLPTY------LDINCNVKQIYMQVRNALATLDQMSLF 119 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQAC----ADFWRRHCYPLPREIAQVV 183 TIHGFC +L ++ ++ + + L+ + D W+ + + V Sbjct: 120 TIHGFCNFVLEQYFPKTRLIHKNPALTHSQLVLHHITNYLKQDLWKNVLFQEQFHLLAVR 179 Query: 184 FETWKGPQALLRD--INRYLQGEAPVIKAPPPDDETLASRHAQIV-ARIDTVKQQWRDAV 240 + + L D + Y Q + + E ++ H QI + ++ KQ + D Sbjct: 180 YNVTSKHTSSLVDKLLASYTQPISSYFSSRVERLEQISLWHQQIYNSLLEIPKQVFLD-- 237 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 +L A I SG ++ F+ + + +E ++ + + E F+ + R K Sbjct: 238 -QLTAHI--SGFKKQPFSILDDLHHFVDLLYTSETHSSLFSFFKIAETFNFKHRLARYKP 294 Query: 301 GGETPRHPLFEAIDQL--LAEPLSIRDL--VITRALAEIRETVAREKRRRGELGFDDMLS 356 F ++ + + L +L + L +++E + ++ L D+ + Sbjct: 295 CAA------FTVLENMSWVERTLEFCNLDRIFNTLLVDLQEYL--KQNYTPWLSPDESVF 346 Query: 357 RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDP 415 L+ L S + + A+R ++ + +IDEFQDTD QQ+ IF ++ T +L LIGDP Sbjct: 347 ALEKLLSSSEAQPVVQALREQYQLVLIDEFQDTDKQQWSIFSNLFISPKFTGSLFLIGDP 406 Query: 416 KQAIYAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI 473 KQ+IY +R AD+ TY+ A+S L N+RS P ++ ++N++F + F EI Sbjct: 407 KQSIYEWRSADLPTYLTAKSSFSEDKQLQLVNNYRSTPKLMEAINQIFGKISP---FLEI 463 Query: 474 P-FIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD---W 529 P ++P++ N F+ + + E I+D W Sbjct: 464 PGYLPIEYHALNPQSSETFENPPHAPIHFFFYET-------------------IKDQALW 504 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 + EAL + + P+ ++ VLV +A ++ T IP V S S+F Sbjct: 505 I----FSEALRLQKEQKIPL--GNMVVLVSDSNQAFELISYAT---IP-VSFSKNKSIFH 554 Query: 590 TLEAQEMLW-LLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGY 648 E + LL+A++ PE + L +S+ GL+ ++ T D + F Sbjct: 555 LTETHILTTALLEAILHPENYEKISKILFSSLFGLSLDEVTTKKEDFTIY------FQSL 608 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT-------QL 701 G++ +M+ + L ++ G+ ++ + L + L Sbjct: 609 HSYISHHGLLATFYRVMTTQ--GNVLFSSPRGDLIFQEMEKLCGYLDTISSYPYHQLLHL 666 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 ++ RW E + SS LE+ ++I TIH SKGLEY +V+ P Sbjct: 667 KNFSETGRW------EEELAISSYSEDLET----LKITTIHSSKGLEYDIVFCP 710 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 48/219 (21%) Query: 940 LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKL-------ELGGFESQWEPVLTE 992 ++ Q P G G +H + E + F+ D ++ + L GFE E +L + Sbjct: 843 ISKQQLPLGEKTGILIHKILESIQFSLLQDTEYLMSTIMRFIKHTHLEGFE---ETIL-K 898 Query: 993 WITAVLQAPLNETG--VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC 1050 ++ +PL + SLSQ+ LP + + R+ L Sbjct: 899 LLSKTFFSPLTFSSQTFSLSQV------------LP----------NKIFRETSFL---- 932 Query: 1051 PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 F++ + + +G IDL F HEG+YY++D+K+++LGE +S Y++ ++ ++ + D Q Sbjct: 933 ----FLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNSDYSKSNLSIYIKQEKLDYQ 988 Query: 1111 YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 ++Y A+ ++L D D E GVI F+RG+D + Sbjct: 989 GRIYVKAVRKFLNQFEIDDDVE---LGVI--FIRGIDTQ 1022 >UniRef50_A7BUG7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BUG7_9GAMM Length = 222 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 10/202 (4%) Query: 973 VREKLELGGFES-QWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYLPISE 1029 + +L+ G++S QW+PV+ I VL PL+ + ++LSQ+ + E+EFY P++ Sbjct: 2 IANQLDRFGYDSEQWQPVIKTMIDNVLNTPLDAKQPNLTLSQIGRDKRLNELEFYYPLAR 61 Query: 1030 PLIASQLDTLIRQFD-----PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 + S L + F P++ L F V+G +KGF+D+VF ++GRYYL+DYKSN Sbjct: 62 -ITPSGLQKVFTDFGHDNLAPIAEEVSRLRFAPVQGFMKGFMDMVFEYQGRYYLVDYKSN 120 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLR 1144 +LG Y + + M Y LQY +YT+ALHRYL R+ DY Y+ HFGG+ YLFLR Sbjct: 121 FLGNQPEDYAKDHLTEVMTQQGYLLQYHIYTVALHRYLAARLPDYQYDEHFGGIYYLFLR 180 Query: 1145 GVDKE-HPQQGIYTTRPNAGLI 1165 G++++ + GIY +P A LI Sbjct: 181 GMNQQWGTRFGIYRDKPTAELI 202 >UniRef50_A2BX90 Possible UvrD/REP helicase subunit B n=7 Tax=Prochlorococcus marinus RepID=A2BX90_PROM5 Length = 1212 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 198/867 (22%), Positives = 370/867 (42%), Gaps = 119/867 (13%) Query: 343 KRRRGELGFDDMLSRLDSALRSE--SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 K+ F+D++ ++ S + + I+ +F ++DEFQDTD Q+ I + Sbjct: 366 KKSLSIFNFNDLIKTVEYKYLSSDICNDRSFSDIQNKFKCVLVDEFQDTDNVQWNIINKF 425 Query: 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKL 460 ++++ LL +GDPKQAIY FRG DI TY+ A+S ++L N+RS+ +++ +N L Sbjct: 426 FNNKNH-FLLCVGDPKQAIYKFRGGDIETYLDAKSSAKEVFSLINNYRSSNDLLDFINNL 484 Query: 461 FSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQ 520 + + + + + S KN + + F E+ P E + + + Q Sbjct: 485 YK---NGLKESNLNYKKLNSRIKN-CINYKFDFES-PF--------EIVQFSNKEIDIEQ 531 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 I D+L Q + + IS+L + ++++ L IP Sbjct: 532 FVTEYIVDFLLNNQE-------------IDINKISILTLYNSQCLELKNKLLKFNIP-CQ 577 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 + N+ ++F+T + +L ++ +++P + S LATS +D+E L +H Sbjct: 578 IKNKQNIFDTEASSLLLLFIETLLSPRLFRNI-SLLATSKFI--EIDVEEL--IDHQISK 632 Query: 641 VVEEFDGYRQIW----RKRGVMPMLRALM--SARNIAENLLATAGGERRLTDILHISELL 694 ++ +W R++G + ++ L+ + +N + +L++I+ I EL+ Sbjct: 633 KIKNLTDQCILWSLELREKGFLTVVNELIINYKSSSIKNEVDLYANLFQLSEIIEI-ELI 691 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL---VQIVTIHKSKGLEYPL 751 + + +W Q+ L+ + + + D +L + + TIH SKGLEY + Sbjct: 692 NNNFNL----NKVFKWY-QNQLDDSLRICTGEDYMAKDYNLQNGINLSTIHNSKGLEYDV 746 Query: 752 VWLPFITNFRVQEQAFYH-------DRHSFEAVLDLNAAPESVDLAEAERL-AEDLRLLY 803 V P+++ + + DR + + + + E + L E L E RL+Y Sbjct: 747 VVCPYLSIISNKSKKTKGPIWKSNLDRSIYINISNNYSKVEGLKLIEERDLFKESERLIY 806 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL----LQKGEPQDAAGLRTCIEA 859 VALTRS + L+ + D ++ L L + + +D ++ I+ Sbjct: 807 VALTRSKY-------KLIIFNDIENTDNILNNDLLPNLKNIHIINSKREDKV-VKMNIKE 858 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQD 919 + + + +N W++N V+T E+ + P D +SYS ++ Sbjct: 859 IS----SKFNLSSLNNNLWKINKVNTKEIRKSS----PEDVISFSSYSSWIRKDKKTESS 910 Query: 920 LMPRLDV-DAAGVASVVEEPTLTPHQ--------------FPRGASPGTFLHSLFEDLDF 964 D D + +EE L FP+G GT LH + E DF Sbjct: 911 SSLYKDYEDNISILKTIEETQLVKSDNNPKYLNLPNPLSDFPKGTVAGTCLHKILERFDF 970 Query: 965 TQPVDPNWVR---EKLELGGFESQWEPVLTEWITAVLQAPLNETGVS--LSQLSARNKQV 1019 + E+L +S + + E I ++ + ++ L +S+ N Sbjct: 971 QNDTPEKLLELIIEELNFFQIDSSFALKVREGIFRIINVSFGKKLLNKRLIDISSNNILK 1030 Query: 1020 EMEFYLP-------ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV--RGMLKGFIDLVF 1070 E+++ LP I+ IA L ++F+ + +Q+ +G G ID V Sbjct: 1031 EVKYDLPLSYNGKSINSNDIAKSF-LLDQEFEFGKEYATKINDLQILNKGFHSGCIDCVI 1089 Query: 1071 -----RHEGRYYLLDYKSNWLGEDSSA------YTQQAMAAAMQAHRYDLQYQLYTLALH 1119 + +++++D+KSN++ ++ Y + M M H Y LQ LY LALH Sbjct: 1090 PLGNTLEDSKWWVIDWKSNFISSKENSDCFPKNYHYENMKKEMIKHHYPLQAHLYLLALH 1149 Query: 1120 RYLRHRIADYDYEHHFGGVIYLFLRGV 1146 R L+ R+ +Y H GG IYLFL+G+ Sbjct: 1150 RLLKWRLKNYQPNLHLGGYIYLFLKGL 1176 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 +L+EASAGTGK+FT+A L LR +L + + EE+L+++FT+ +EL+ +I S Sbjct: 13 KLVEASAGTGKSFTLAHLVLRNVL--------EKKIKPEEILLLSFTKNTCSELKDKILS 64 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD-------EAAVFTIHG 131 ++L+ + L+ D + + LLE D + ++ ++D + V T H Sbjct: 65 RFNKLK-SFLQNHDDTEIDDTLLEWYDKYHKEEKYPENIIFEIDNFVNAFYKLKVTTFHA 123 Query: 132 FCQRML 137 FC +L Sbjct: 124 FCNNIL 129 >UniRef50_B2KE90 UvrD/REP helicase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE90_ELUMP Length = 1074 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 215/861 (24%), Positives = 378/861 (43%), Gaps = 143/861 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 ++EA AGTGKT + + L++ + ++VE ++ +TFTE A AE++ R+ + Sbjct: 22 VVEAGAGTGKTTLLISRLCYLMI--------VKNISVERIVALTFTEKAAAEIKIRLSAQ 73 Query: 80 IHELRIACLRETTDNPLYERLL-----EEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 + ++ CL T + + LL EEI +AQ + L ER + TIHGFC Sbjct: 74 LQKIIKECLSVTQKDKITLELLAHLSKEEIIIRAQ--RVLEFLERGF----ISTIHGFCS 127 Query: 135 RMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL-----PREIAQVVFETWKG 189 +L E+G+ + DE R W + P+E E WK Sbjct: 128 YILKAYPVEAGI--SPSAVVDEGQRRETVFKRLWNKWLEEELGGGGPKE------EIWK- 178 Query: 190 PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIES 249 +L++IN A D HA++++ + + + ++ + Sbjct: 179 --RVLKEINLEDLYNYAFDMAGGKIDAYHPMSHAKVLSGVCFENAKIAE---QMSCVFLP 233 Query: 250 SGIDRRKFNRS-NQAKWIDKISAWAEEETNSYQLPESL--EKFSQRFLEDRTKAGGETPR 306 G RK R+ A I + +A+A +E +Q E+ EK S D+ K + Sbjct: 234 PGGKSRKIERALASASIILQEAAFAFKE-GKFQKTENPGPEKLSS---SDQAKGWDDENF 289 Query: 307 HPLFEAIDQLLAEPL-SIRDLVITRALAEIRETV--AREK-RRRGELGFDDMLSRLDSAL 362 +D A L R ++I A + + V AR+ +G + FDD+L + + L Sbjct: 290 ETAVRIVD--FARSLYPDRQMLIADAFSLVSPFVNNARDTFEAQGLISFDDLLVKTRTLL 347 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ----------YRIFRRIWHH--QPETALL 410 ++ ++ +A++ +F + IDEFQDTDP Q + ++W+ L Sbjct: 348 KNNL--IVRSALKKQFEIIFIDEFQDTDPVQGELLLFLAEEEKSAAKVWNEIKLAPGKLF 405 Query: 411 LIGDPKQAIYAFRGADI-----FTYMKARSEVHAHYTLDTNWRSAPGMVNSVN----KLF 461 ++GDPKQ+IY FRGADI FT + + Y L TN+RS +++ VN KL Sbjct: 406 VVGDPKQSIYRFRGADITAYQLFTELILKQGGMICY-LQTNFRSDAQIIDFVNCAGFKLI 464 Query: 462 SQTDDAFMFREIPFIPVKSAGKNQ-ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQ 520 + F + +P A ++ A++ V QP DY+ A+ Sbjct: 465 EER-PGFQAKYVPINAKDGAPCDKDAVKDVIISSEQPQ-----------SADDYRHNQAE 512 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A W+ A G+ L NG ++ DI+VL+R+ +AL + Y Sbjct: 513 FTA----KWI-AENAGKLKLSNGS---VLQYKDIAVLMRTSNAFNIFTEALKRYGVK--Y 562 Query: 581 LSNRDSVFETL-EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 D F T E ++L LL + P +N L L + G N +I + + D Sbjct: 563 TVEEDKNFYTAQEITDILNLLSLLDNPYDKNALAGVLRSPFGGFNDDEIYQIFKQKFT-D 621 Query: 640 VVVEEF-DGYRQIWRKRGVMPMLRAL---MSARNIAENLLATA----------GGERRLT 685 + ++ G+ ++ + L+ +S + E +L++ GE+ ++ Sbjct: 622 ISAKKLPKGFERLGGFYKTLNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQTIS 681 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL-------VQI 738 ++ + L AG Q E+ ++L ++L+ +S ++Q R E + L V + Sbjct: 682 NLQKFAAL--AAGDQNENANSLGQFLA------NSKDLARQARGEGESPLADEFLSAVSV 733 Query: 739 VTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA------APESVDLAEA 792 +TIHKSKGLE+P+V+L + FR +++ +++S+ D++ A ++ E Sbjct: 734 MTIHKSKGLEFPVVFLADM--FR--QESVKQNKYSYSWFYDMHGLRAGPYADANLAFLEV 789 Query: 793 ERL----AEDLRLLYVALTRS 809 ++L +E+ R+LYVALTR+ Sbjct: 790 QQLWHSKSEEARILYVALTRA 810 >UniRef50_C0QTS0 Putative UvrD/REP helicase n=1 Tax=Persephonella marina EX-H1 RepID=C0QTS0_PERMH Length = 1021 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 191/832 (22%), Positives = 345/832 (41%), Gaps = 140/832 (16%) Query: 23 ASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 ASAGTGKT+T L+ + + + ++++ V TFTE A +EL+ RI + I E Sbjct: 8 ASAGTGKTYT-------LVEKIVDEYIIRKRINIDQVFVSTFTEKAASELKSRIYARIKE 60 Query: 83 LRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAF 142 + E NP + L R + + + TIH R+L N Sbjct: 61 ----KIYENQKNP-------------DQLKLLFSNFRNVQHSYIGTIHSLLLRILKANPD 103 Query: 143 ESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQV----------VFETWKGP 190 +SG+ + ++I+D + L +++ F ++ RE A + ++ +K Sbjct: 104 KSGITEDIKVIDDLQQEALFFESFEIFLEKN-----RERAGILANYFSGKNQIYTVFKNI 158 Query: 191 QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI--DTVKQQWRDAVGELDALIE 248 A L I RY K + E R + ++ D +K +RD V + L Sbjct: 159 YANLWKIERYR-------KESIEEREGYIKRLKEKALKLLDDFIKDHYRDFVDSQEFLKT 211 Query: 249 S-----SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 + I + +F + K + + +++ +SL+K LED+ Sbjct: 212 DLKDIYTKIKQERFTQIKVEKNKNFPKLLKHKNVKNHRSLKSLDKEKVLELEDQ------ 265 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 L +++L L + L+I E + +KR + + D++ R Sbjct: 266 -----LINTLEELRNNALYLNFLIILDNFDEFLQIFEEKKRENHLITYSDIILR------ 314 Query: 364 SESGEV------LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ 417 S E+ L R RF IDEFQDTD Q I R + + L++ GDPKQ Sbjct: 315 --SKEIFLRYPDLLEEYRERFKAFFIDEFQDTDQIQTDIIRMLSER---SDLIVFGDPKQ 369 Query: 418 AIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477 IY +R AD++ Y+ + +E TL+ +RS P +V N F + D F+ R+ Sbjct: 370 CIYEWRSADLYNYI-SFTEDFEERTLNVCYRSGPSLVGFFNLFFVEND--FLNRDYS--- 423 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD-------YQSTMAQVCAAQIRDWL 530 N+ ++ ++ E + +++ +S + D T A +I+ L Sbjct: 424 ------NRKVKELYHLEEKYIPELFYSSEKSLDITDPVEIVKTESDTEPVALAEKIKQLL 477 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV-YLSNRDSVFE 589 +G E DI VL RSR + + L IP + +LS+ + + Sbjct: 478 NSGYSPE---------------DILVLFRSRSKTDRYIQELRKSNIPFISFLSS--NFYN 520 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV-VVEEFDGY 648 ++E +L +L+ + P + TL L + + + +I + ND + + ++E Sbjct: 521 SVEVITVLNILKLIQYPYDQLTLLKVLKSPVFSFSDKEIYQIRNDLYIDRIPQLKEIKRL 580 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALV 708 +I + +L + + E G++++ ++ E L+ +LE E+ + Sbjct: 581 EEIKDSLNISQILDRVYRDLPVLEIFSLYPDGKQKVANL----EKLKFIADRLEGENFQL 636 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN--------- 759 R Q LE + + + +D V+++T+H+SKGLE +V +P ++ Sbjct: 637 RDFIQ-FLEDNRYKDEEDALITTDDRFVKVMTMHRSKGLEAKVVIIPGLSERINRSTNGF 695 Query: 760 FRVQEQAFYHDRHSF--EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 F V+++ R + E LN E V + + E+ RLLYVA TR+ Sbjct: 696 FTVEDEIMVRIRDDYNREVARTLNFDEEKV---KRKIYLEEKRLLYVAFTRA 744 >UniRef50_D1C5W8 UvrD/REP helicase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W8_SPHTD Length = 1125 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 285/1139 (25%), Positives = 451/1139 (39%), Gaps = 207/1139 (18%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 T + +R L +EA AGTGKT + + +L G A TV+EL+V+TFT Sbjct: 10 TREAIRTALDRNFFVEAGAGTGKTTVLVDRIVAILRN--GHA------TVDELVVITFTR 61 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 A AEL R+R + E R +TT++ + L A + A + Sbjct: 62 LAAAELATRVRERLEETR-----DTTES-------------EEERARLEEALYALPRARI 103 Query: 127 FTIHGFCQRMLNLNAFESGM--LFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 TIH F +L E+G+ FE+ SL +A D+ P Sbjct: 104 ETIHAFAAGLLRERPVEAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNP---------- 153 Query: 185 ETWKGPQALLRDINRYL---------------QGEAPVIK--APPPDDETLASRHAQ--- 224 E + P+A+ R +NR L + P++ P PD +R Q Sbjct: 154 EDGERPEAVWRALNRGLDLRHLREVVEQVHHHRSLLPLVHDDVPAPDIHGFLARFEQDVD 213 Query: 225 ----IVARI----DTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 I+AR D QQ R + + D L + DR R+ + KIS Sbjct: 214 ELEEILARCRNPADHGAQQIRMLMAQRDDL-RAVRNDRDALERA--ILHLPKISQKGAR- 269 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR 336 S+ P ++ + + +A E R EAI LL PL+ D V R E Sbjct: 270 -TSWVDPADCDR-QKEICRELNEAVEEVKRALRAEAIAGLL--PLA-EDFV--RGYTE-- 320 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 ++RR G F+D+L LR + R RF ++DEFQDTDP Q I Sbjct: 321 -----QRRRTGRAEFEDLLIWARDLLRDRPE--VRRYFRERFRCILVDEFQDTDPLQVEI 373 Query: 397 FRRIWHHQPETA--------------LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-- 440 + +P+ L L+GDPKQ+IY FR ADI Y + V Sbjct: 374 LLYLCGEEPDGVAARDWRELRPAPGRLFLVGDPKQSIYRFRRADISIYEWVKRHVLPGDL 433 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQT---DDAFMFREIPFIPVKSAGKN--QALRFVFKGET 495 T+ N+RS G+++ VN F D +P P A + +A V E Sbjct: 434 CTITQNFRSLGGVIDWVNGCFQHIIAPHDGVQAGYVPLDPWPQARLDLPRAPVVVVHHE- 492 Query: 496 QPAMKMWLMEGESCGVGDYQSTMAQVC---AAQIRDW-LQAGQRGEALLMNGDDARPVRA 551 M+G + V Y++T A + W ++ + GE RP R Sbjct: 493 --------MDGSADDVRRYEATTLAALLRQAVDVEGWPVRDPETGE--------IRPARW 536 Query: 552 SDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENT 611 D+++L+ SR +AL IP + R S F+ E +E++ L+A+ P + Sbjct: 537 RDVAILIPSRTGIEIYEEALAEAGIPYRHEGGR-SFFQRQEVRELINCLRAIDDPGDRLS 595 Query: 612 LRSALATSMMGLNALDI----ETLNND---------EHAWDVVVEEFDGYRQIWRKRGVM 658 + +AL + G + +I E + D EHA V + R++ R + Sbjct: 596 MVAALRSGAFGCSDEEIFLAAEAMGTDFDYRREPPPEHA--AVADGMHTLRELHTLRHRL 653 Query: 659 P---MLRALMSARNIAENLLATAGGERRLTDILH-ISELLQEAGTQLESEHALVRWL--- 711 P ++R ++ + E L G++ ++L + + A + A VRWL Sbjct: 654 PLPELVRRVIDETRLIEYALTLPQGDQAAANLLKVVDQARAFAAARGGGLRAFVRWLDTA 713 Query: 712 -SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 S+ E D++ + E+ +V+++TIH +KGLE+P+V L + + + D Sbjct: 714 TSRSTEEEDADVA------EAGDDVVRLLTIHAAKGLEFPIVALANLQGRDARTRNVIPD 767 Query: 771 RHSFEAVLDLNA-------APESVDLAEAER---LAEDLRLLYVALTRSVWHCSLGVAPL 820 L + + P AE E+ AE RLLYVA TR+ H L P+ Sbjct: 768 HAVRRLHLRVGSQDQGYFETPGYAAAAEIEKQHDAAEQDRLLYVAATRARDHLIL---PV 824 Query: 821 VRRRGDKKGDTDVHQSALGRL---LQKGEPQ---DAAGLRTCIEALCDDDIAWQTAQTGD 874 + +G ++ + + L RL L P + A + C L GD Sbjct: 825 IIWKGSREKERK-PKGMLARLAPHLPVPTPDHSPNGADIDGCHVLLA------AHLPVGD 877 Query: 875 NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASV 934 N + + +++ R + W + + L+Q G G+ A+ V + Sbjct: 878 NGLRESPPATNVDVDDVLAVR---ERWLMERAALLKQAGAGLQV-------TTASSVEAW 927 Query: 935 VEEPT----LTPHQFPRGA--SPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFESQWE 987 +EP TP PR A + GT LH+ E LD + + + R K G Sbjct: 928 DQEPADDAEATPGALPRDAALAVGTALHATMEALDLSDDGEVESMARAKAAEAGV----- 982 Query: 988 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 P + + A+ +A L +GV +A E F LP+ + + ++D L R+ D L Sbjct: 983 PGHADEVAALARACLA-SGVVQRARAAERAAREAAFTLPVGDGFVEGRVDLLFREPDGL 1040 >UniRef50_B1YKM8 ATP-dependent helicase/nuclease subunit A n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=ADDA_EXIS2 Length = 1183 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 210/882 (23%), Positives = 360/882 (40%), Gaps = 143/882 (16%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT A L RL + PLT + +LV TFT AA E++ R+ Sbjct: 18 GHILVSAAAGSGKT---AVLVERLTQRVINQED---PLTADRILVATFTNAAAKEMKTRV 71 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ---MDEAAVFTIHGFC 133 +E I+ K + A L ++Q M+ A + TIH FC Sbjct: 72 ------------------------IEAIEAKIKVAPDDLYLKKQRQMMNRAQITTIHSFC 107 Query: 134 QRMLNLNAF------------ESGMLFEQQLIEDESLLRYQACAD--FWRR-HCYPLPRE 178 +L N + E+ +L Q + +E + A AD F+ Y R+ Sbjct: 108 LSILRENYYRIGLDPAFRIAEEAELLLLQDDVLEEVFESFYASADPAFYELIDSYTSDRD 167 Query: 179 ---IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIV-ARIDTVKQ 234 + ++ ++ ++L Y A + PD+ +L +R ++ R+ V Sbjct: 168 DQAMLTLISNLYRFSRSLPDPEAFYDHLIAQYDQPIDPDESSLLTRLFELEWERVGPVIN 227 Query: 235 QWRDAVGELDALIESSGIDR------------RKFNRSNQAKWIDKISAWAEEETNSYQL 282 ++ EL + SG D R+ N Q +W A+ E ++ Sbjct: 228 RYM----ELSYRLRQSGYDEMADLLVQDVTPVRRIN-PEQDRWTTVALAFQAVEFGRWKG 282 Query: 283 PESLEKFSQRFLEDRTKAGGETPR-HPLF---EAIDQL--LAEPLSIRDLVITRALAEIR 336 E+ ++F +RT+ + + LF + +D L L L ++++T + Sbjct: 283 IRGDEEM-KKFQTERTRLVSDLKKMRDLFVEKDGVDYLEDLRSQLGHVEMIVT-LVRSFS 340 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEV--LAAAIRTRFPVAMIDEFQDTDPQQY 394 K++RG + F D L A+ E+GE +A ++ RF ++DE+QDT+ Q Sbjct: 341 AAYLEAKQQRGIVDFSD-LEHFALAILEENGEPTDVARLLQERFIEVLVDEYQDTNEVQE 399 Query: 395 RIFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKA-----RSEVHAHYTLDTNWR 448 RI R + T L ++GD KQ+IY FR A+ ++ ++EV L N+R Sbjct: 400 RILRLVSKSDEATGNLFMVGDVKQSIYKFRHAEPGLFLNKFKRFQQTEVGTRIDLTKNFR 459 Query: 449 SAPGMVNSVNKLFSQTDDAFM----FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 S +++ N +F Q D + + E ++ + + G + TQ ++ L+ Sbjct: 460 SRLEVLDGTNHIFRQVMDEAVGEIDYDEAAYLRLGNLG--------YVDSTQVDPELLLV 511 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + + + AQV A +I + + R DI +LVRSR + Sbjct: 512 DQTDTNKEELE---AQVIATRIIEMVNDENPYLVFDAKQKRFRKCEYRDIVILVRSRGKR 568 Query: 565 AQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 Q + D E+P VY F+ E Q M+ LL+ + P ++ S L + + GL Sbjct: 569 VQALVDVFEQYELP-VYADTTGGYFQATEIQIMMSLLKTIDNPLQDIPFASVLRSPIFGL 627 Query: 624 NALD---IETLNNDEHAW-----------------DVVVEEFDGYRQIWRKRGVMPMLRA 663 D I + D + D + + +R R + + ++R+ Sbjct: 628 TDRDLGRIRAKSKDGSFYEAAILVAKEQTPLGLRVDEALNQLHHWRTEARGKSLASLIRS 687 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE--HALVRWLSQ-HILEPDS 720 L E + GG R ++ L E Q E+ L R+L H L Sbjct: 688 LFDQTGYFEYVGCLNGGRSRQANL----NALYERAHQYEASGYRGLYRFLRLIHRLVERG 743 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNFRVQEQAFYHDRH-----SF 774 S+ L D+ +V+I+TIH+SKGLE+P+ + + F Q+Q H + Sbjct: 744 EDFSEARSLGEDEDVVRIMTIHQSKGLEFPVTIVSQLGKQFNKQDQIQAIQLHKTYGIAL 803 Query: 775 EAVLDLNAAPESVDLAEA-------ERLAEDLRLLYVALTRS 809 +A+ + L E E AE++R+LYVA+TR+ Sbjct: 804 DAIDPVKRLRSGTLLKEVIRREMDREMKAEEMRVLYVAMTRA 845 >UniRef50_B8IZF9 UvrD/REP helicase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZF9_DESDA Length = 1173 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 220/892 (24%), Positives = 359/892 (40%), Gaps = 168/892 (18%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG--GSAAFPR-------PLTVEELLVV 62 R+ +Q R ++ASAG+GKT+ + +L+ L+ G G+AA P P ++L V Sbjct: 32 RIFMQHLRQVKASAGSGKTYELTRCFLQRLVACGAPGTAASPACALSSSGPCGWGDILAV 91 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFT AA E+R R+ I +L+ A L + P+ L D A A +W+ R M Sbjct: 92 TFTNAAATEMRERV---IRQLKSAALGQ----PMQGLEL----DSASAGRWVDAIMRDMS 140 Query: 123 EAAVFTIHGFCQRMLNLNAFESGML--FEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 + TI ++ A + + F+ +E+L Y + Sbjct: 141 ALNIRTIDSLLHLIVRAAALDLRLHPDFQPVFATEEALTPY-----------------LD 183 Query: 181 QVVFETWKGPQ---ALLRDINR----------YLQGEAPVIKAPPPDDETLASRHAQIVA 227 ++ + W+G + LLR + R +L GE + + P D L R+ + + Sbjct: 184 LLLEKAWQGDENMRGLLRQVCRAMVHHGQSKGFLAGEKLLYQLRPLLDSALLGRYGDLSS 243 Query: 228 ------RIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 ++ + + R A G L L +SG + + +A ++AWA+ E + Sbjct: 244 YEELEQKLIALNRTARQAAGHL--LHAASGARLPWLSNAEKA-----VTAWADGECKNSA 296 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFEAID----------QLLAEPLSIRDLV-ITR 330 L K + L + A G H + A QLL + L + + + R Sbjct: 297 F---LTKDAASQLFKKGAAVGPEVEHA-YTAFSLAAQACMQDGQLLRQALRLEPSIRMAR 352 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQD 388 LA+ + + G L + L + G E L + R ++DEFQD Sbjct: 353 ILAD---AFLHNQEQEGTLPGLLVPHMAHEVLSGDHGVPETLCR-LGARLTHYLVDEFQD 408 Query: 389 TDPQQYRIFRRIWHHQPE--TALLLIGDPKQAIYAFRGADIFTY--------MKARSEVH 438 T +Q+R R + +L +GD KQ+IY +R D + + A + Sbjct: 409 TSQEQWRALRPLVEEALSRGGSLTWVGDVKQSIYGWRDGDPELFDGILEDKGLAAVAATT 468 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI--PFIPVKSA---------GKNQAL 487 A +L NWRS +V N LFS + A R + +P ++L Sbjct: 469 ARDSLPFNWRSRRQVVEHNNALFSLLEQADTARAVMSALLPGDMPEDLSAEIMDASVKSL 528 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 F G Q + +G V D + +++ + D L G LL DD Sbjct: 529 LGAFAGTRQECPEH-TPDGGLVQVEDIAADSSEMLREAVFDRL-----GRILL---DDVA 579 Query: 548 PVRA-SDISVLVRSRQEAAQVRDALTLLEIP-----SVYLSNRDSVFETLEAQEMLWLLQ 601 P R SD+ VLVRS AA++ D L L IP S+ LS + +T+ LL Sbjct: 580 PQRPWSDVLVLVRSNDGAARIADHLVRLGIPVITENSLLLSAHPLIVQTVA------LLA 633 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE---FDGYRQIW------ 652 + +P+ L + L + + E + D H W ++ + +RQ W Sbjct: 634 FLDSPDDNIALLTVLTGEIFHGHPEAAELAHTDLHGWCARQKKGFLYQSFRQRWPHVWQS 693 Query: 653 ------RKRGVMPMLRALMS--AR-NIAENLLATAGGERRLTDILHISELLQEAGTQLES 703 + G+M ++ AR + + A RR ++LH +E A Sbjct: 694 LLAPFFSQSGLMTPYDTVLEWYARLQVEQRFPEAATFLRRFMEVLHSAEEKGLATLSTFL 753 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHL--VQIVTIHKSKGLEYPLVWLPFIT-NF 760 EH W NA SQ+ ++ +++ V+++T+HKSKGLE P+V++PF N Sbjct: 754 EH----W----------NAKSQEEKVPMPENMNAVRVMTVHKSKGLEAPVVFVPFTALNI 799 Query: 761 RVQEQAFYHDRHSFEAVLDLNAA---PESVDLAEAERLAEDLRLLYVALTRS 809 ++ +R ++ A P DLA R E L LLYVA TR+ Sbjct: 800 SASDKPLRTNRQGLSMMVRNQKALGRPYYEDLARQAR--ESLNLLYVAFTRA 849 >UniRef50_B9EAN8 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EAN8_MACCJ Length = 1148 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 270/1251 (21%), Positives = 483/1251 (38%), Gaps = 255/1251 (20%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + +R ++ + + V+ELLVVTFT A+ E++ RI Sbjct: 19 LVAAAAGSGKTAVLVERIIRKIID--------QSVNVDELLVVTFTNASAKEMKHRI--- 67 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + RL E ++D A + L ++ +A + T+H FC ++ Sbjct: 68 -----------------FNRLQEALND-APHNEHLKTQLIKLHQADISTLHRFCLNLIER 109 Query: 140 NAFESGM--LFEQQLIEDESLLRYQACADFWR---RHCYPLPREIAQVVFETWKGP---Q 191 + + F E+ +LL QA D +P + + K + Sbjct: 110 FYYTIDLDPTFRTASEEERALLLMQAIDDVLETIYEAAHPDDMTLLLHLSSDRKDDYVRK 169 Query: 192 ALLRDINRYLQGEAP-----VIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 L++ N + P I A D T +S I +I+ Q + + L Sbjct: 170 TLVKLYNFAIANSHPSRWLEAIAASYRDVSTDSSYFLSINQQINDELHQAVQLIKRAEDL 229 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE-KFS--------------- 290 S +D +++ KI E Q PESLE KFS Sbjct: 230 CISPALD-------TNLEYLQKIREQLE------QFPESLEEKFSFIQSIQFGRKPNMKK 276 Query: 291 -------------QRFLEDRTKAGGETPRHPLFEAIDQLLAE--PLSIRDLVITRALAEI 335 + +L K + L+ I++L + +S+ +TR + Sbjct: 277 SDDPYDKELNEGIKEYLTQSKKLVSNIQENYLYAPIEELADDIRAMSVEVERLTRMTQMV 336 Query: 336 RETVAREKRRRGELGFDDMLS-RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 + ++ KR R + F D L + ++ +A ++ ++ ++DE+QDT+ Q Sbjct: 337 IDRFSQLKRERKLIDFSDYEHFALQILIHNDEPTEIAHMLKAQYKEILVDEYQDTNRVQE 396 Query: 395 RIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT---------LDT 445 I + I + + + ++GD KQ+IY FR A+ +M E ++H+ L Sbjct: 397 SIIQAI---KRDDNMFMVGDVKQSIYKFRQAEPELFM----EKYSHFKSGGPGKVIDLSQ 449 Query: 446 NWRSAPGMVNSVNKLFSQT-----------DDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 N+RS ++N+ N++FS+ DD ++ P+ ++ L + K E Sbjct: 450 NFRSRRAVINNTNEIFSKIMDEKLGDIIYDDDQMLYYGAPY---DDMSQHTELHLLNKEE 506 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 L + E + Q+ A + E + + R + DI Sbjct: 507 --------LNDIEYFASHHIADVIEQIIAQE-----------EVYDVKTGEYRAAQYKDI 547 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 ++L R AA+ + +IP ++++++ F+T E +L LL+ V P ++ L Sbjct: 548 AILERGFSSAAEHMKVMKDRKIP-FHVNSKEGYFQTDEINTILSLLRVVDNPLQDIPLAG 606 Query: 615 ALATSMMGLNALDIETLNND---------------------EHAWDVVVEEFDGYRQIWR 653 L + + +A ++ L +D ++ V+ + YR+ R Sbjct: 607 LLRSIIYQFDAHELTALRSDCSVFLYHNLLSYSVNGEDAQLKYKVKKVLADISDYREQSR 666 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE-----HALV 708 K V ++ + + + E GG +R ++ LLQ+A Q E + + Sbjct: 667 KVSVKDLIDYIYNDTLLIEKFTLLPGGHQRQANL---EGLLQKA-EQFEQSSYRGIYQFL 722 Query: 709 RWLSQHILEPDSNASSQQMRLESDK-HLVQIVTIHKSKGLEYPLVWLPFITN----FRVQ 763 R++ +ILE + +M + SD+ ++V+++T+H SKGLE+P V I + Sbjct: 723 RFVD-NILEAGKDFG--EMNIVSDEANVVRMMTVHASKGLEFPFVIYNNIDRQFNLMETK 779 Query: 764 EQAFYHDRHSFEAVLDLNAAPESVDLA---------EAERLAEDLRLLYVALTRSVWHCS 814 EQ + R A + LA E+++E+LRL+YVALTR+ Sbjct: 780 EQLLLNQRLGLSITFYDKMAHTTYPLAINQLFKTKIRNEQVSEELRLMYVALTRAREKLV 839 Query: 815 L--------GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI- 865 L + DKK D SAL L Q A + AL DD I Sbjct: 840 LVGNVKDDKVIEKFQNVDVDKKMDDYYRLSALSPL------QFIAPI-----ALHDDSID 888 Query: 866 --AWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR 923 +T T +N+ + + + AE LQ L + S + L + ++ Sbjct: 889 VRMIRTLNTLENKATETAESTKAE-GVTWLQELKDYRYPYLSENLLPTKES--VSEIKKA 945 Query: 924 LDVDAAGVA-----------SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW 972 + D A + + P + A GT +H + + L VD Sbjct: 946 QETDDEATAWTYINQYRLGKATYDRPKFMSEEKKTAAEYGTLMHKVMQHLPRLNNVDSED 1005 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPL-NETGV-SLSQLSARNKQV---EMEFYLPI 1027 ++ L + ++ I + + PL NE + ++ ++ V E+ F LP Sbjct: 1006 IKHFL---------DDLVNRRIISDEERPLINEKHIYQFTKTVLYDRLVHADEVYFELPF 1056 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 +I Q I Q P +++G ID VF++EG YY +DYK++ + Sbjct: 1057 ---VIGKQ---YITQSHP-------------DQLVQGMIDCVFKYEGHYYFIDYKTDQVI 1097 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 T++ +A RY++Q Y L L + Y Y G V Sbjct: 1098 SRLGRTTEETLAEL--KLRYEVQMNYYKKTLEVILDEPVTGYLYFFEAGTV 1146 >UniRef50_A5ZAT8 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAT8_9FIRM Length = 1220 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 137/545 (25%), Positives = 246/545 (45%), Gaps = 90/545 (16%) Query: 328 ITRALAEIRETVAREKRRRGELGFDD-------MLSRLD---SALRSESGEVLAAAIRTR 377 I + E + + +K +G + F+D +L+ D + + SE+ + +A T+ Sbjct: 333 IGKLTLEFMKRLKEQKEEKGIMDFNDQAFFALHILNEYDKDGNLVPSETAKNMA----TQ 388 Query: 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV 437 F MIDE+QD++ Q I I + ++GD KQ+IY FR A+ +++ + Sbjct: 389 FKEIMIDEYQDSNIIQEAILSAITKGFGINNMFMVGDVKQSIYRFRNAEPKLFLEKYNSF 448 Query: 438 -------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV 490 LD N+RS ++ SVN LF D M E+ I K+ L Sbjct: 449 SDDPSADSVKIVLDKNFRSRREVIESVNFLF----DFVMHEEVGGIDYKNGN---GLVLG 501 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 + PA + L E GD +S A A +I++ + + G + G D RPVR Sbjct: 502 ADYDEPPAGQDNLTEFVMVEGGD-KSDEAAYVARKIKE-ITNPETGLKITEKGKDMRPVR 559 Query: 551 ASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 DI +L+RS ++ + + R+ L IP V+ ++ ++T+E + +L + P ++ Sbjct: 560 YGDIVILLRSMKDNSDIYREQLENNGIP-VFAESKTGYYKTMEVMTITNMLSIIDNPRQD 618 Query: 610 NTLRSALATSMMGLNALD---IETLNNDEHAWDVV---------------VEEF----DG 647 L + L + M G ++ I+T N E +D V + EF Sbjct: 619 IPLAAVLTSPMFGFDSNQLAIIKTENVCESFYDCVEQYSLSGSDVELRTRLTEFLNTLTK 678 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHA- 706 +R + V ++ L+ A + + GG++RL L+I L ++A E+ + Sbjct: 679 FRNMVPYTTVYDLINTLLDETGYAFYIRSMPGGKKRL---LNIQALKEKAVAYDETSYKG 735 Query: 707 ---LVRWLS--QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR 761 +R++ Q++ + D AS+ + + ++V+I++IHKSKGL++P+V+L TN Sbjct: 736 LFNFLRYIEKIQYLAKDDGEAST----VNENDNIVRIMSIHKSKGLQFPVVFLCN-TNGT 790 Query: 762 VQEQAFYHDRHSFEAVLDLNAAPESVDLA-----------------EAERLAEDLRLLYV 804 + +A + + D N + ++ + E +AE LR+LYV Sbjct: 791 SKNEA-----NQLVSGADGNIGIDCINNKLKTKQTPLLKTYIRMSNKEEDVAETLRILYV 845 Query: 805 ALTRS 809 ALTR+ Sbjct: 846 ALTRA 850 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 27/121 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + ++++ P V +LLVVTFT AA +E++ RIR Sbjct: 19 LVSAAAGSGKTAVLVERIIKMI------TDEENPTDVNQLLVVTFTRAAASEMKERIREA 72 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + ++ DNP +D Q L+ A + TI FC R++ Sbjct: 73 LEKME-------EDNP---------NDLNVQKQLSLIH-----NANISTIDSFCARVVKD 111 Query: 140 N 140 N Sbjct: 112 N 112 >UniRef50_C8XGW9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGW9_NAKMY Length = 1139 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 133/275 (48%), Gaps = 40/275 (14%) Query: 939 TLTPH-QFPRGASPGTFLHSLFEDLDFTQPVDPNWVR----EKLELGGFESQWEPVLTEW 993 TL+P P GA+ GT +H++FE D P VR E++ GF + L Sbjct: 863 TLSPMADLPVGATFGTLVHAVFETTDPRAADLPAQVRARCAEQVARVGFPLDPD-TLAAA 921 Query: 994 ITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPIS---------EPLIASQLDTLIRQ 1042 + VL+ L G++L+ L R++ E+EF LP++ L+ L +IR+ Sbjct: 922 LVPVLRTSLGPLAGGLTLADLGTRDRLTELEFELPLAGGDRAAGPVPDLVLGDLAPVIRR 981 Query: 1043 F----DPLSA-----GCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGE-DSS 1091 DPL+ P + +RG L G +D V R G RY + DYK+NWLG+ DS Sbjct: 982 HLPAADPLAGYADRLAAPSFAELPLRGYLTGSLDAVLRLPGPRYLVADYKTNWLGDFDSG 1041 Query: 1092 A------YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG 1145 A Y AM AAM Y LQ LYT+ALHR+LR R Y H GV+YLF+RG Sbjct: 1042 APLSLWDYRPAAMDAAMAGSDYPLQAMLYTVALHRFLRWRQPGYHPGRHIAGVLYLFVRG 1101 Query: 1146 V-DKEHPQ-----QGIYTTRPNAGLIALMDEMFAG 1174 + + P+ G++ P LI + ++ G Sbjct: 1102 MAGPDTPEIDGRPCGVFGWAPPVELITAVSDLLDG 1136 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 8/65 (12%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G L+EASAGTGKT I L R + + RP ++LLV+TF AA+ ELR R Sbjct: 20 RGTTLLEASAGTGKTHAIGDLVTRYI-----AEGVARP---DQLLVITFGRAASQELRER 71 Query: 76 IRSNI 80 +R ++ Sbjct: 72 VRDHL 76 >UniRef50_Q13F62 UvrD/REP helicase n=3 Tax=Alphaproteobacteria RepID=Q13F62_RHOPS Length = 1115 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 213/885 (24%), Positives = 353/885 (39%), Gaps = 154/885 (17%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+EA AG+GKT +A + +L G G + + + +TFTE A +ELR RI Sbjct: 22 LVEAGAGSGKTSVMAG-RVAVLFGKG--------VEPKNIAAITFTELAASELRLRIEKF 72 Query: 80 IHELRIACLRETTDNP--LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 L + D P L + E + + +A L A + D+ A TIHGF Q ++ Sbjct: 73 TTALSLG------DVPPDLTQAFPEGVPEAEKAN--LYRACQSFDQLACTTIHGFAQSLI 124 Query: 138 NLNAFESGMLFEQQLIE-DESLLRYQACADFWRRHCYPLPRE---IAQVVFETWKGPQAL 193 E+G+ +++ DE+ L + D W + + +AQ+V G L Sbjct: 125 KPYPAEAGIDPGADIVDPDEAELAFGERYDAWLKQRLSVDDADGLVAQLVLADEGGGLKL 184 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGID 253 + ++ ++L+ AP A+ + +A + +++ DA+ + E +G+ Sbjct: 185 IEEVAQFLRKNRDARCAP-------AAWAEKTMADVIAAVKRFEDALAAVGFEEEDTGLR 237 Query: 254 RRKFNRSNQAKWIDKISAWAEEETN---SYQLPESL----EKFSQRFLEDRTK------- 299 R K+SA A + + P EK ++R L + TK Sbjct: 238 CRTLIALVDILNPGKLSAGAPDTAALIAALNFPRHTSCFTEKGTRRQLRNGTKWQDAAAK 297 Query: 300 -----AGGETPRH---PLFE----AIDQLLAEPLSIRDLVITRALAEIRETVAR---EKR 344 A G+ PL++ A++ LLA +I +++R AE++ + KR Sbjct: 298 VGLKKADGKKTSDALVPLYDGCHNALETLLA---AIAGELLSRLCAEMQGLLLEWRDYKR 354 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 L FDD+L L + A+ R+ ++DEFQDTDP Q I I Sbjct: 355 DAALLDFDDLLFTARDLLAGHPE--VRRALSQRYRYVLVDEFQDTDPLQTEILWMICGED 412 Query: 405 PETA-------------LLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRS 449 E A L ++GDPKQAIY FRGAD+ Y+ ARS V A + N+RS Sbjct: 413 CEGADGAPLKRPLRPGALFMVGDPKQAIYRFRGADVNAYLAARSAVPQDARLAITANFRS 472 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 ++ VNK F + + + AG+ F +P G++ Sbjct: 473 VEPILAFVNKRFER------------VLSEEAGQPG---FAELSPVRPP------NGDAP 511 Query: 510 GVGDYQSTMAQVCA--AQIRDWLQAGQRGEALLMNGD---------DARPVRASDISVLV 558 V T+ Q + + IRD A + G+ + RP R DI++L Sbjct: 512 AVVALDVTLPQGASGVSAIRDAEAAALAELCCRLVGNLQVHDPETKELRPCRLGDIALLA 571 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 + E + + L IP + + F E +++ L++ + P L + L Sbjct: 572 PAGTELWRFEEVLEDRGIPVATQAGK-GFFRRQEIHDLIALVRTLADPRDTLALGALLRG 630 Query: 619 SMMGLNA---LDI--------------ETL---NNDEHAWDVV----VEEFDGYRQIWRK 654 ++GL LDI TL N EH V +E R+ R Sbjct: 631 PLIGLTENELLDIMEGLPVDPDRPARLPTLTVGTNPEHIAHAVARKAIENLQALRRRIRI 690 Query: 655 RGVMPMLRALMSARNIAENLLA--TAGGERRLTDI---LHISELLQEAGTQLESEHALVR 709 +L MS ++ +L G ER + ++ L + G + S + Sbjct: 691 TTPYALLADAMSDFHVRPHLRQRFRTGAERAVANVDLFLEFARAYDVRGLRAFSRDMTAK 750 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYH 769 W + + + R ++++ V ++T+H +KGLE+P+V +T Sbjct: 751 W--------EDDEDQAEGRPDAEEESVSLITVHAAKGLEWPVVIPINMTGKPFAGGVLMQ 802 Query: 770 DR-HSFEAVLDLNAAPESV----DLAEAERLAEDLRLLYVALTRS 809 DR +S ++ L P + ER E +RL YV +TRS Sbjct: 803 DRPNSRFSIPVLGTEPSDYAAMKTMNALERDRERVRLWYVGVTRS 847 >UniRef50_C1SHH6 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH6_9BACT Length = 330 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 146/280 (52%), Gaps = 37/280 (13%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + ++ L PL G LIEA+AGTGKT+ I AL+ R++ L +P VE +LVVT+T Sbjct: 4 KQMELLTAPLTGTSLIEANAGTGKTYNITALFTRMVTEL----QYP----VESILVVTYT 55 Query: 66 EAATAELRGRIRSNIHELRIA--CLRETTDNPLYERL-----LEEIDDKAQAAQWLLLAE 118 AA ++L+ +I ++++ +A LR++ + + + L+ ++ + + L A Sbjct: 56 NAAVSDLKAKIYKRLNDVLLAMVSLRDSVEITMEDEFPLDYALKRKENLTKDIKLLKGAV 115 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 R D+ A+FTIHGFCQRML NAF + ++ L D + + +FWR + Y +P+E Sbjct: 116 RDFDQCAIFTIHGFCQRMLKENAFSGHVAYDIDLTGDSREILKKPVYNFWRENIYKMPQE 175 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEA--------PVIKAPPPDDETLASRHAQIVARID 230 +++ P +L IN Y+Q ++ P + P D + S ++ + Sbjct: 176 AIKLLKSL--TPDSL---INFYMQVQSNQSITVAEPAVIVEPEDILKIIS---ELTDCMT 227 Query: 231 TVKQQWRDAVGELDALIESSGIDRRKF---NRSNQAKWID 267 TVK + EL L++S R+ F RS QA++++ Sbjct: 228 TVKTCFTSNETELRELLDSK---RKNFPLDKRSYQARYVN 264 >UniRef50_Q1WRS0 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus RepID=ADDA_LACS1 Length = 1248 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 199/910 (21%), Positives = 378/910 (41%), Gaps = 172/910 (18%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + + + ++++ELLVVTFTEAA E++ RI Sbjct: 23 LVAASAGSGKTRVLVERVIN---------KIKQGVSIDELLVVTFTEAAAKEMKERI--- 70 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 +IA +E L D + + ++L + ++ A + T+H FC +++ Sbjct: 71 ----QIALRKE----------LSTADSEEEKRRYLTQLSK-LNVANISTLHAFCLQIIKQ 115 Query: 140 NAFESGM--LFEQQLIEDE--SLLRYQACADF---WRRHCYPLPRE-------------I 179 + + +F + L ED +LL+ D W P + Sbjct: 116 YYYVINLDPMF-RMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVVNFSSDRNDDGL 174 Query: 180 AQVVFETWK------GPQALLRD-INRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 +++V +T++ P L + ++ Y G+ P++++ ++ + QI D + Sbjct: 175 SELVMKTYQFANANPNPDEWLNNLVSEYDLGDQPLMESNFYQNKIKPNVLDQIQLAKDNL 234 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF--- 289 KQ +A G+++ ID++ + L +L+ F Sbjct: 235 KQGMDEA--------NKLGLEKLYQTFEQDCATIDELQDFVVGCKEWNNLKTTLQNFKFK 286 Query: 290 ---SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--------ITRALAEIRET 338 S R L+D K E L + +++ E LS++ +T+ +I ET Sbjct: 287 RAKSDRGLDDDQKKQKERINKTLRDGSKKII-EDLSVKYFALPEDEIKELTQKSKQIVET 345 Query: 339 V-----------AREKRRRGELGFDDMLSRLDSALRSES--GEVLAAAIRTRFPVAMIDE 385 + ++EKRRR L F D+ L +++ G + ++ +F M+DE Sbjct: 346 LSEVVKEFGAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDE 405 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------ 439 +QDT+ Q I I H P + ++GD KQ+IY FR AD ++K Sbjct: 406 YQDTNQLQETILTTIAHKNPGN-MFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNDDE 464 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQ-----------TDDAFMFREIPFIPVKSAGKNQALR 488 L N+RS + N +FSQ +DA + + P ++ K + L Sbjct: 465 RIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKAEVLV 524 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP 548 + + +Q + + E + + + A +I++ ++ G++ RP Sbjct: 525 YESEDSSQESDDEPV--NEDFSIDNKAQGQIVMTAKRIKELVENGEK--IYDKKQGTIRP 580 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 + DI++L +R+ + + L +P +++ + + F+T E + M+ LQ + P + Sbjct: 581 IEYRDIAILAPTRKNNLILTEEFKRLGVP-IFVPDAQNYFQTTELKIMMSFLQIIDNPYQ 639 Query: 609 ENTLRSALATSMMGL--NALDIETLNNDEHAWDVVVEEF-DGY---------RQIWRKRG 656 + L + L + ++GL N L +N+ + VE F D + + ++ K Sbjct: 640 DIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLYEKIA 699 Query: 657 VMPMLRALMSARNIA-ENLLAT------------------AGGERRLTDILHISELLQE- 696 + L+ L RN+A +N LA+ GG +R ++ + E E Sbjct: 700 I--FLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAAEY 757 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL-- 754 + VR++++ + + + S ++ D V ++TIH SKGLE+P+V+L Sbjct: 758 EEMSFKGLFQFVRFINK-MQTKNKDLSEATTQVSDDA--VTVMTIHGSKGLEFPVVFLLD 814 Query: 755 ------------PFITNFRVQEQAFYHD---RHSFEAVLDLNAAPESVDLAEAERLAEDL 799 P++ N Y D R + ++ + A +++ + AE + Sbjct: 815 ATHKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGKQAL----KKLAAEQM 870 Query: 800 RLLYVALTRS 809 RLLYVALTR+ Sbjct: 871 RLLYVALTRA 880 >UniRef50_A6FXM6 ATP-dependent DNA helicase, UvrD/REP family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXM6_9DELT Length = 1027 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 220/899 (24%), Positives = 352/899 (39%), Gaps = 169/899 (18%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 L L ++ A AG GKT + + L L G G A PL E+ VTFTE A EL Sbjct: 21 LELDANLVLAAGAGAGKTHALVTVALGLYAGTPGEAGGRAPLEPTEVWAVTFTEKAAREL 80 Query: 73 RGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGF 132 R RI + L D P +L D + A +W + E Q+ A + T H Sbjct: 81 RQRIVARASALARDPEGALADEPELVAMLG--DARPSAGRWRAILE-QLPLAPIGTFHSL 137 Query: 133 CQRMLNLNAFESGMLFEQQLIE------------DESLLRYQACADFWRRHCYPLPREIA 180 C ++L A E+G+ +++E DE LLR D H R + Sbjct: 138 CAQVLRSYAVEAGVDPSFEVLEENGAAELLDGVLDEVLLRELEDPDS---HTRAAARALG 194 Query: 181 QVVFETWKGPQAL---LRDINRYLQGEAPVIKAPPPDDETLASR---HAQIVARIDTVKQ 234 GP+ L LR ++ L E ++ D + A R A A + + Sbjct: 195 --------GPEQLRTALRRLHAKLGEEGRDPRSLLVDADGRAQRGFDRAMARAELGDACE 246 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + +GE AL+ S DR + A D+I E + P + SQR Sbjct: 247 E----LGEALALLRESKEDRLRPTLRALAIEDDRIGG-CEAHAVARWYPALVRVASQR-- 299 Query: 295 EDRTKAGGETPRH------PLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR----EKR 344 + G P+ P A +++ S+ ++ + + + + ET++R EK Sbjct: 300 ----RGKGTLPKRAKRVWEPFAAAWERVQDAVASLGEIDLAQRVVALLETLSRAYAAEKA 355 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF------- 397 R G + F D++ LR + V+ A ++ R ++DEFQDT+ Q + Sbjct: 356 RVGAMDFADLVRGAHDLLRDD--RVVRAQLQRRVGALLVDEFQDTNGLQLDLVHLLAEER 413 Query: 398 ---RRIWHHQPETALL--------LIGDPKQAIYAFRGADI--FTYMKARSEVHAH---- 440 R + +A L +GD KQ+IY FRGAD+ F + AR+ Sbjct: 414 SQQRAVPRGARASACLPLAARTFAAVGDRKQSIYEFRGADVALFQSLAARARAGEEGLRL 473 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQ---TDDAFMF-----REIPFI-PVKSAGKNQALRFVF 491 L +WRS PG+V N LF Q +DD F E+ + PV+ + QA Sbjct: 474 AALRRSWRSRPGLVRFANALFDQLLISDDPAGFAVDWIEEVDALSPVREDHELQA----- 528 Query: 492 KGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL---------LMN 542 PA+++ +GD A++R +A + E + L Sbjct: 529 ---GIPAVQLL--------IGDPSQD------ARVRRGHEAARLAEHVERLIAARPPLGR 571 Query: 543 GD---DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 D +P+R +D+++L+R+ A+ R AL+ I SV + R F E +E++ L Sbjct: 572 ADREGTPQPLRGADVAILMRTHGHVARYRRALSERGIASVVVGGR-GFFAAREVRELVAL 630 Query: 600 LQAVMTPERENTLRSAL------------------------------ATSMMGLNALDIE 629 + A+ P + L SA + GL D Sbjct: 631 MLAIADP--GDALASAAVWRSPVWGIDDDSLVALAVADAVAMRHHVEGCGVEGLPTRDAA 688 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 + + D + E D + G +LR + + E L GE+R+ ++ Sbjct: 689 AVTHMGRLVDRLHHELD-------RLGPARVLRFAVDRLGVREVLAWDDAGEQRIANVDK 741 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 + +LL A R L + + + ++ +D + V+I+T+H SKGLE+ Sbjct: 742 LLDLLGSREFAGVGAQAAARRLLERGEDLLDREAPAEVAAAADPNAVRIMTVHASKGLEF 801 Query: 750 PLVWLPFI-TNFRVQEQAFYHDRHSFEAVLD------LNAAPESVDLAEAERLAEDLRL 801 P+V LP + R QE +R AV+ ++ AP A A R A R+ Sbjct: 802 PVVVLPELGAEPRGQEGPVVFERELGLAVISPTSWVGVDPAPTPRRSASASRPAATPRV 860 >UniRef50_Q03NA7 ATP-dependent helicase/nuclease subunit A n=1 Tax=Lactobacillus brevis ATCC 367 RepID=ADDA_LACBA Length = 1262 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 136/547 (24%), Positives = 239/547 (43%), Gaps = 73/547 (13%) Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV--LAAAIRTRFPVAMIDE 385 ++R + R +EK+RR L F D+ + L +S + +AA +R +F M+DE Sbjct: 346 LSRVVTAFRTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDE 405 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----- 440 +QDT+ Q I I P+ L ++GD KQ+IY FR AD +M + A Sbjct: 406 YQDTNGLQEAILTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGE 465 Query: 441 -YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG--KNQALRFVFKGETQP 497 L N+RS + + N +F Q M RE+ I A K A + + Sbjct: 466 LIVLAENFRSMKNVDDFTNLIFKQ----LMDRELGEIDYTGAAQLKFGASYYPDTVTSTA 521 Query: 498 AMKMWLMEG--ESCGVGDYQSTMA--QVCAAQIRDWLQAGQRGEALLMN--------GDD 545 + ++L E ES G D ++ A QV + L GQ+ + L+ + Sbjct: 522 ELLVYLTEDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQ 581 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 RP+ DI++L +R + D L L IP V +++ + F+T E Q M+ LLQ + Sbjct: 582 VRPMTYGDITLLTPTRTNNLIITDELRRLGIP-VVVNDARNYFKTTEIQIMMALLQIIDN 640 Query: 606 PERENTLRSALATSMMGLNALDIETLNNDEHAWDV------------------------- 640 P ++ L + L + ++GLN ++ L ++ D Sbjct: 641 PYQDIPLAAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQAVYQ 700 Query: 641 ----VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 +E+ +R I ++ ++ ++ + + + GE+R ++ + E + Sbjct: 701 KVSHFLEQLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKS 760 Query: 697 -AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 + + VR++ + + E D + + ++ D V ++TIH SKGLE+P+V++ Sbjct: 761 YEQSSFKGLFQFVRFV-ERLQERDDDLAGAPVQAADDA--VSVMTIHGSKGLEFPVVFIM 817 Query: 756 FIT-NFRVQEQAFYHDRHSFEAV----LDLNA---APESVDLAEAE-----RLAEDLRLL 802 + F Q+Q + + LD ++ AP L A+ LAE++R L Sbjct: 818 DASRQFNKQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKL 877 Query: 803 YVALTRS 809 YVALTR+ Sbjct: 878 YVALTRA 884 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 31/152 (20%) Query: 20 LIEASAGTGKTFTIAALYL-RLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ ASAG+GKT + + RL G+G ++++L+VTFT+AA AE+R RI++ Sbjct: 23 LVSASAGSGKTRVLVQRVIERLKTGVG----------IDQILIVTFTKAAAAEMRERIQT 72 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 L + L D AQ Q+ L Q+ A + T+ FC R+L Sbjct: 73 ----------------ALRQELAVSQGDSAQ-QQFYLRQLNQLPVADISTLDAFCLRLLQ 115 Query: 139 LNAFESGMLFEQQLIEDES---LLRYQACADF 167 + + +L+ DE+ LLR + AD Sbjct: 116 RYYYVIDLDPVFRLLADETENGLLRDEVWADL 147 >UniRef50_C2D6U3 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6U3_9ACTN Length = 1253 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 186/806 (23%), Positives = 313/806 (38%), Gaps = 140/806 (17%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 +EA AG+GKTFT+ L L G V ++L++TFT AA E++ RIRS+ Sbjct: 37 FVEAGAGSGKTFTLTKRVLWALTKGSGPNGTAFLDDVSQVLIITFTHAAAHEIKERIRSS 96 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + E A Q L ++D A + TIH C R+L Sbjct: 97 LRE-------------------------AHMPQQAL----EVDNAWISTIHSMCSRILKT 127 Query: 140 NAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINR 199 A + G+ + + + ++ RR + + FE G + LL Sbjct: 128 YALDLGIDPQFSIASENDTVK------LMRRAVQDVLSDYYHKRFEI-SGMRLLLGAYEM 180 Query: 200 YLQGEAPVIKAPP--PDDETLASRHAQIVA-------RID--TVKQQWRDAVGELDALIE 248 G+ P D + SR A+I A +++ T++ + D +G L L Sbjct: 181 GSMGDVSTGFLPTGLCDVISTISRQAKIYADGYDAFTKVEDTTLEPRIDDIIGGLTTLCN 240 Query: 249 SSGIDRRKFNR--------SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK- 299 + I + + S + ++ E T+ ++ S E RTK Sbjct: 241 ADDITEKAKEKLAPCTEFASRLKSCLQNLTHTLEFATSDDEVIASSNDICACLQELRTKL 300 Query: 300 --AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA-------EIRETVAREKRRRGELG 350 + G+ L + S+R LV+ RA + E + KR L Sbjct: 301 PTSVGKAHAQELKTLKEDFACAHDSVRFLVLNRAFDLCVDIARHVDERYMQLKRECSMLD 360 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 DD++ ++ S +AA + RF + M+DEFQDTD Q + + E L Sbjct: 361 NDDLIHETLRVIKHNS--YIAAQLTNRFKLVMVDEFQDTDTAQLELISLLSGKNAE-HLT 417 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLF-----SQTD 465 +GD +Q+IYAFRGAD+ + K + L N+RS +++ V+K+ S Sbjct: 418 TVGDAQQSIYAFRGADVSVFRKREATCPCALKLCVNYRSHKDILSFVDKVCDAGTPSNPK 477 Query: 466 DAFM--FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCA 523 + F + P + A +K P + + +++ VCA Sbjct: 478 QGLVQHFMHLDDNPTRDA-------HAYKAHDLPRLDVEMVKA---------PFKRDVCA 521 Query: 524 AQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSN 583 ++ A QR A + +G + SD+++LVRS DA+ + V +S Sbjct: 522 RKVLAAALA-QRMYAYVKHGQ-----KPSDMALLVRSATNVDVYLDAIRARGLNCV-VSG 574 Query: 584 RDSVFETLEAQEMLWLLQAVMTP-ERENTLRSALATSMMGLNALDIETLNN--------- 633 + E Q M LL + P + +N L L + + L+ D+ L + Sbjct: 575 GSTFTSAPEVQVMAQLLHVLANPCDTQNGLFGLLISPLFALDEQDLLLLASMNQPTSDLP 634 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARN---------IAENLLATAGGERRL 684 + D +E Y+ + + LM ARN + +++ +G RL Sbjct: 635 AKRPIDRGLEHMTFYKDMPCSLRLQRAHDILMRARNELPYKSVADVCLDVVKQSGWLLRL 694 Query: 685 -----------TDIL----HISELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMR 728 +I+ +I EL ++ G + WLS+ + P S A Sbjct: 695 EKAGTTTIPVRANIMAALRYIDELTKDLGLGPARAAQEFDIWLSRSKIAPASLAG----- 749 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWL 754 D+ +Q++T+H SKGLE+PLV+L Sbjct: 750 --DDQDSIQVMTVHASKGLEFPLVFL 773 >UniRef50_C4L3Q8 Recombination helicase AddA n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Q8_EXISA Length = 1205 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 203/878 (23%), Positives = 366/878 (41%), Gaps = 139/878 (15%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT A L RL L LT + +LVVTFT AA AE++ RI Sbjct: 21 LVSAAAGSGKT---AVLVERLSSRLLDETD---ELTADRMLVVTFTNAAAAEMKRRIAKA 74 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM-DEAAVFTIHGFCQRMLN 138 + E LR D+P E + ++ RQM + A + TIH FC ++ Sbjct: 75 LEE----ALR---DDPTNEYVRKQ---------------RQMLNRALITTIHSFCLEVIR 112 Query: 139 LNAFESGMLFEQQLIEDESLLRYQAC--------------ADFWRR-HCYPLPR---EIA 180 N + + ++ E+ L+ Q DF+ Y R EI Sbjct: 113 ENYYLLDLDPAFKIAEERDLVLLQDDVLEEVLEEEYGKQDTDFFALVDAYTSDRGDSEIE 172 Query: 181 QVVF------ETWKGPQALL-RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 ++ T P A L + ++ Y GE PD+E + Q++ ++ Sbjct: 173 DLILGLYHYARTLPNPDAYLDKLVSMYTFGE-------DPDEEAILIEFGQMLWH--DIE 223 Query: 234 QQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA----WAEEETNSYQLPESL--- 286 + RD + +L+A + +G + + N +++ W+E ET + + Sbjct: 224 KAVRD-LRKLEAELRVAGYEPQSENIRQAIFPFEQLEGETIVWSELETAARAMKFGTMKA 282 Query: 287 --EKFSQRFLEDRTKAGGETPRHPLFEAIDQL------LAEPLSIRDLVITRALAEIR-- 336 +K + + K + + L A++Q L E +S++ ++ + +R Sbjct: 283 VPKKEEHQIYHEVLKPAYDQAKKKLTAAVEQARVSGADLLESVSMQQPLVETLVRTVRAF 342 Query: 337 -ETVAREKRRRGELGFDDMLSRLDSALRSESGEV-LAAAIRTRFPVAMIDEFQDTDPQQY 394 + + KR R + F D+ + LR + G +AA + RF ++DE+QDT+ Q Sbjct: 343 GQAYEQAKRDRAFVDFSDLEHYALAILRQDGGPSDVAALYKERFAEVLVDEYQDTNEIQE 402 Query: 395 RIFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT-----LDTNWR 448 I + + + E L ++GD KQ+IY FR A+ ++ + T L N+R Sbjct: 403 TIINLVANEREEIGNLFMVGDIKQSIYRFRHAEPGLFIDKATRFRQANTGKRIDLSQNFR 462 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA---MKMWLME 505 S ++ +N LF Q D V ++A + V E +P + L++ Sbjct: 463 SRSEVLYGINDLFVQLMDE---------EVGEIAYDEAAQLVPGREYEPIPADPEFILVD 513 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-A 564 G S + Q + A +I + + + + + R DI +LVRS++E Sbjct: 514 GASRELSK-QEVEGRAIATRILELVSGDEPFKVTDESTGQLRNCEYRDIVILVRSKKERV 572 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 Q+ D LT IP+ Y + F+ E + +L LL+ + P ++ L AL + M + Sbjct: 573 EQLMDILTQYNIPA-YTDSDGGYFQATEIRMILALLKVIDNPLQDIPLAGALRSPMFRFD 631 Query: 625 -----------------ALDIETLNNDEHAWDV--VVEEFDGYRQIWRKRGVMPMLRALM 665 AL + ++DE +++ +R R + +++ L Sbjct: 632 DGELARIRLESEDSFYEALKAKADDDDELGVKCGEMLDRLSRWRTYARNHSLSELIQQLF 691 Query: 666 SARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLS-QHILEPDSNASS 724 + + GG+ R ++ + + + + L R+L L+ S Sbjct: 692 NDTGFYDFSGGLPGGKGRQENLKALYD--RALAYERSGYRGLYRFLRVMDRLQDTGEDLS 749 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQ-AFYHDRH--SFEAVL 778 + L ++++V+I+T+HKSKGLE+P+ + + N R Q Q +H ++ S +A+ Sbjct: 750 EARSLGDEENVVRIMTVHKSKGLEFPVTIVAQLGKQFNKRDQMQRVIFHKQYGISLDAID 809 Query: 779 DLNAAPESVDLAE-------AERLAEDLRLLYVALTRS 809 + + E A AE++R+LYVALTR+ Sbjct: 810 VVTRTKSETFVKEMIRRDLDATMKAEEMRVLYVALTRA 847 >UniRef50_Q02D20 UvrD/REP helicase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02D20_SOLUE Length = 1088 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 214/855 (25%), Positives = 344/855 (40%), Gaps = 143/855 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 ++EASAGTGKT + + ++ +A P VE ++ VTFT AA ++ R+R Sbjct: 15 VVEASAGTGKTTALVDRMVEVI-----AAGTP----VETIVAVTFTHAAAGNMKLRVRHE 65 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + R A TD + RL + A R +D A + TIH FC ++L Sbjct: 66 LERRRAA----ETDEAIRLRLAD--------------AARSLDRAFIGTIHAFCAQLLRR 107 Query: 140 NAFESGM--LFEQQLIEDESLLRYQACADFW-----RRHCYPLPREIAQVVFETWKGPQA 192 E+ + +F Q+L + ++L + W R L R +A++ + T P Sbjct: 108 RPVEAQVDPVF-QELAQADALRVFGRMFRRWIEGKLARPSPALSRALARMEWRT--EPLE 164 Query: 193 LLR----DINRYLQGEAPVIKAPPPDDETLAS--RHAQIVARIDTVKQQWRDAVGELDAL 246 LR ++ + +A K P D +A A+ R+ K+ R L Sbjct: 165 ELRKAAWNLTEWRDFDAAWQKRPFDRDARMARLLDKAEATLRVGGRKESLRP----LGEF 220 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 +E + R+ +A +D E++ +LP L + D A E Sbjct: 221 VE-------RVRRAREAGRLDGDRV----ESDLLRLPAELRWVKGK---DAAVAAWEE-- 264 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 L AI++ E + + L E+ EKRR G+L F D+L LR + Sbjct: 265 --LRAAIEEFRCEADADLAAHLRDELWEVVGHYQEEKRRAGQLDFMDLLLCARELLRHDG 322 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF---------RRIWHHQPET--ALLLIGDP 415 A ++ + +DEFQDTDP Q I R W L ++GDP Sbjct: 323 AR---ADLQRVYQRIFVDEFQDTDPLQAEILLLLASGDAAERDWRKVTPAPGKLYVVGDP 379 Query: 416 KQAIYAFRGADIFTYMKARSEV----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 KQ+IY FR AD + + S++ A L ++ RS + + VN F ++ + ++ Sbjct: 380 KQSIYRFRRADARLFHRVCSDLLAGGVAERKLTSSTRSTAAIQSFVNAAFERSIENYL-- 437 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCA----AQIR 527 P++ V E QP++ M E G + + C+ A Sbjct: 438 -----PLEGG--------VEAPEGQPSVVALPMP-EPYGSRNISNVKIDACSPDAVAGFI 483 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ--VRDALTLLEIPSV--YLSN 583 WL + G + PVR + +L R ++ + LE + L Sbjct: 484 QWL-CNESGWKVRDRSRGWVPVRPEHVCILFRRFTNYGTDLTQEYVRCLEARGIAHLLVG 542 Query: 584 RDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN---ALDIETLNNDEHAWDV 640 S E + L+AV P+ E ++ + L S+ + L + + H Sbjct: 543 SKSFHRREEVGTLRTALRAVEWPDDELSVFAVLRGSLFAVMDDVLLRFKNAHGGFHPMKE 602 Query: 641 VVEEFDG-----------YRQIWRKRGVMPM---LRALMSARNIAENLLATAGGERRLTD 686 + EE D ++ R+R P+ + L+ GGER L + Sbjct: 603 LPEELDEEFAPIAEAFGILSELHRRRNFRPLADTIHELLEKTRAHAGFAFRKGGERVLAN 662 Query: 687 ILHISELLQ--EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKS 744 + +++L + E S + V +L E D + +S+ LE + VQ++T+HK+ Sbjct: 663 VYRLTDLARSFEVSGAATSFRSFVEYLEA---EYDGSDTSEAPVLEQEGGGVQLMTVHKA 719 Query: 745 KGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA------AP-ESVDLAEAERLA- 796 KGLE+P+V L +T Q DR+S E L L A AP E VD AE E A Sbjct: 720 KGLEFPVVILADLTAKLTGPQG--ADRYS-EPELRLCAQRLLWCAPWELVDAAELEAKAD 776 Query: 797 --EDLRLLYVALTRS 809 E LR+ YVA TR+ Sbjct: 777 EEEALRVAYVAATRA 791 >UniRef50_C8W759 UvrD/REP helicase n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W759_ATOPD Length = 1165 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 195/808 (24%), Positives = 339/808 (41%), Gaps = 149/808 (18%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 +T+ L PL + A AG+GKTFT+ + L G+ P ++++ L++TFT Sbjct: 12 KTIKTLDKPL----FVAAGAGSGKTFTLTQRIVWALKEGSGADGKPYLSSLDQALIITFT 67 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 AA E++ R+R + + + L A Q+D+A Sbjct: 68 NAAATEIKERVREALEK-----------------------------EGLHSAALQVDDAW 98 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF- 184 + TIHG C R+L ++A + + E ++I+D + R Q L ++ + F Sbjct: 99 ISTIHGMCSRILKIHALDLDLDPEFEIIDD--MTRNQLVTISIEEVLRELSQDESYAEFL 156 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 T+ G + L+ L A ++ P ++++ + +D +K + G L+ Sbjct: 157 STYAGNRDALKSRIETLISYA---QSSPLGIDSIS--FVGDSSDLDVLKAELESLCGALE 211 Query: 245 AL---IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA- 300 A I D + +S Q++ + K+ L SL F Q F E KA Sbjct: 212 AFKAAIAEKKPDEAEQLQSVQSELLSKLQQ---------HLVLSLTDFDQAFWEALGKAV 262 Query: 301 ----GGETPRHPLFEAIDQL-LAEPLS--IRDLVITRALAEIRETVAREKRRR----GEL 349 + + EA+ QL + L I+D+ + L ++ E V + +++ G L Sbjct: 263 KAVRSSKEIKMVRDEAVYQLKVCSSLFGLIQDVSEGQRLKDVTEQVYKLFKQKKLAIGGL 322 Query: 350 GFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL 409 DD+L L + + E E+ AA +F + M+DEFQDTD QQ ++ + + + L Sbjct: 323 DNDDLL-HLTAKVFEEHPEI-AAVYTDKFKLVMVDEFQDTDQQQVQMIKSLSGKDAQY-L 379 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT--LDTNWRSAPGMVNSVNKLFSQTDDA 467 +GD +Q+IY FRGAD+ + + ++EV L N+RS ++ V K+ S Sbjct: 380 TTVGDAQQSIYRFRGADVDVFFRRQAEVPEDLQPRLVDNFRSHNEILRFVAKVCSADGMI 439 Query: 468 FMFREI---------PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM 518 F ++ PFI + +FV G ++P GD + Sbjct: 440 ADFMDLSAGREEPTTPFIAHSPRVYFEVTKFVKSGSSKP--------------GD-DISR 484 Query: 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 Q+ A Q+ D + LM ++ ++A D+++L+ S +EA +AL I S Sbjct: 485 KQLVAHQLADRINT-------LMQDEN---IQAKDVAILMSSVKEAQPYIEALRTFGIES 534 Query: 579 VYLSNRDSVFETLEAQEMLWLLQ--AVMTPERENTLRSALATSMMGLNALDI-------- 628 V +S + E E + + LLQ A M E L L++ + L+A D+ Sbjct: 535 V-VSGASTFGEQPEVELIGSLLQTLANMYDSYEG-LFPVLSSEIFNLDASDLLLLGTNFG 592 Query: 629 ---ETLNNDEHAWDVVVEEFDGYRQIWRK-RGVMPML---RALMSARNIAENL------- 674 + + N + A +V + F+ +I K + + +L R+ +S +++ L Sbjct: 593 ENGQKITNRDIAESLVNDAFNPPFEISLKLKNALEILSDARSSLSNNRVSDVLKKVVLDA 652 Query: 675 -----LATAG--GERRLTDIL----HISELLQEAGTQLES-EHALVRWLSQHILEPDSNA 722 L G G+ ++ +I I L +E + S A W P Sbjct: 653 GWISRLQNKGNEGQSKIANIFAALEQIDSLQKELSVGIASVAKAFSEWCGTAKESPKVLH 712 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYP 750 SS Q + V +TIH SKGLE+P Sbjct: 713 SSTQ-------NAVTFMTIHASKGLEFP 733 >UniRef50_A6LPC4 ATP-dependent helicase/nuclease subunit A n=4 Tax=Clostridium RepID=ADDA_CLOB8 Length = 1245 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 187/894 (20%), Positives = 367/894 (41%), Gaps = 193/894 (21%) Query: 340 AREKRRRGELGFDDM---LSRLDSALRSESGEV---LAAAIRTRFPVAMIDEFQDTDPQQ 393 ++ KR R L F+D+ ++ S E+ + +A + F ++DE+QD++ Q Sbjct: 354 SKRKRERNILDFNDLEHLCLKILSDYDDENNIIPSSIAMNFKEYFDEVLVDEYQDSNNVQ 413 Query: 394 YRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGA------DIFTYMKARSEVHAHYTLDTN 446 I + + + ++GD KQ+IY FR A + + + + V+ L N Sbjct: 414 ETIINLVSRKNDDNPNVFMVGDVKQSIYRFRQAKPELFIEKYNTYDSSNGVNRKIQLYKN 473 Query: 447 WRSAPGMVNSVNKLFSQ-----------TDDAFM-----FREIPF--------IPVKSAG 482 +RS +++ VN +F + TD+ + F+E F I V Sbjct: 474 FRSRREIIDGVNYIFKEVMSEVVGELEYTDEEALNLGADFKENKFKDTIVGGPIEVNIID 533 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAG---QRGEAL 539 K+ V E Q + ++EG ++ A +I++ + Q + L Sbjct: 534 KSHNETVVEDNEEQEEINNVILEG-------------RIVAKRIKELMSKSEDEQIFKVL 580 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 + RP++ DI +L+R+ + ++ + D L+ IP VY FE++E + ++ Sbjct: 581 DKESGEYRPLKYRDIVILLRATKNWSEPLLDELSAEGIP-VYADTGSGYFESIEIRTIIS 639 Query: 599 LLQAVMTPERENTLRSALATSMMGLNA---LDIETLNNDEHAW----------------- 638 LL+ V P ++ + S + + +MG +A DI + D + + Sbjct: 640 LLKVVDNPMQDIPVISVMRSPIMGFSAEEISDIRLVKKDNYFYENIKYISEEAYNSINES 699 Query: 639 --DVVVEE---FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG----GERRLTDILH 689 DV++ + F WR + + + + + G G R ++ Sbjct: 700 YSDVLIAKCKYFINSVDKWRNKSIYMAIDEFIWYLYMDTAYYGYVGAMPNGVLRQANL-- 757 Query: 690 ISELLQEAGTQLE--SEHALVRWLS--QHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 ++L + Q E S L +++ +++ + S Q+ L ++ +V+I++IHKSK Sbjct: 758 --KILFQRARQFEKTSFKGLFNFINFINKLIKSSGDMGSAQV-LGENEDVVRIMSIHKSK 814 Query: 746 GLEYPLVWLPFI-TNFR---VQEQAFYHDRHSFEAVLDLNAAPESVDLAEA--------- 792 GLE+P+V+L + NF + + YHD +L P+ +D+ + Sbjct: 815 GLEFPVVFLCGLGKNFNLMDLNKSILYHD--------ELGLGPDFIDIGKRFSIGTLAKE 866 Query: 793 --------ERLAEDLRLLYVALTRSVWHCSL-GVAPLVRRRGDK---KGDTDVHQSALGR 840 E L+E++R+LYVA TR+ + G + + +K D ++ + Sbjct: 867 SIKKKMKFETLSEEMRILYVACTRAKEKLIMTGTVGNLEKSAEKWLGSASLDYNRISPSE 926 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT------GDNQPWQVNDVSTAELNAKT-- 892 +L+ D + C D + ++ T DN W+V+ + +L KT Sbjct: 927 VLKGKSYLDWICMSLCQHR--DGSVLSESFGTENLILKDDNSRWKVSFWNKGDLIDKTKT 984 Query: 893 -------------LQRLPGDNW------RVTSY-----SGLQQRGHGIAQDLMPRLDVDA 928 + P DN+ ++ SY + + + DL R + Sbjct: 985 EVLEQGEGYELTIINNKPYDNYLYEEVDKILSYKYPFKASTTIKSNISVSDLKRRHAEED 1044 Query: 929 AGVASVVEEPTLTPHQF---PRGASP---GTFLHSLFEDLDFTQPVDPNWVREKL-ELGG 981 + E +F +G +P GT +H + + +DF + ++E+L EL Sbjct: 1045 YDTEQLYREKVKVVPKFLQEKKGLTPSEKGTAVHFVMKKIDFNRVSSTEEIKEQLHEL-- 1102 Query: 982 FESQWEPVLTEWI-----TAVLQAPLNETGVSLSQLSARNKQV--EMEFYLPISEPLIAS 1034 FE ++ +L+E + T +L ++ G + L+ R +++ E+ FY IS + Sbjct: 1103 FEKEF--LLSEELKVINPTKILSFFRSDLGKKILDLNCRGEKIYREIPFYTEISSLEVDK 1160 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088 LD + + ++R L+G ID F ++G L+DYK++++ E Sbjct: 1161 TLDNIYKD-------------EKIR--LQGIIDCFFEYKGDIILIDYKTDYIME 1199 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 27/121 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + +R++ P+ +++LLVVTFT AA AE+R RI Sbjct: 22 LVAAAAGSGKTAVLVERIIRIITNE------ENPVDIDKLLVVTFTNAAAAEMRERIAD- 74 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 A +E +NP + L Q LL + A + T+H FC ++ Sbjct: 75 ------AISKELENNPRSKNL---------QRQLTLL-----NRANITTMHSFCLDVIKN 114 Query: 140 N 140 N Sbjct: 115 N 115 >UniRef50_C5CHI0 Exodeoxyribonuclease V n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHI0_KOSOT Length = 991 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 125/466 (26%), Positives = 208/466 (44%), Gaps = 59/466 (12%) Query: 319 EPLSI-----RDLVITRAL----AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV 369 EPL I + L+ TR ++ E E RR L FDD+L + L + ++ Sbjct: 196 EPLKIGNDGEKILLATRTFHKHFKQLVEHYENEARRNNSLDFDDLLIKTRDLLHN-FPQL 254 Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFT 429 +R RF +IDEFQDTD Q I + H + LL +GD KQ+IY FRGAD+ Sbjct: 255 REKYVR-RFKYILIDEFQDTDWLQKTIIDYL-HEEERNFLLFVGDAKQSIYRFRGADVTV 312 Query: 430 YMKARSEV---HAHY-TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ 485 + + ++E +AH TL N RS P +V N+LFS+ M ++ KS + Sbjct: 313 FNRTKAEFEIKNAHLETLSVNRRSHPDLVEFQNRLFSK----IMLQDRSGKYYKSIYDTE 368 Query: 486 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD 545 ++ ++ + ++ ++ E+ S +QV A I++ L E N D Sbjct: 369 VSAIPYEQDSNDS-RVRVLVSEN-------SDDSQVVAQYIKNLLSE----EITFRNKDG 416 Query: 546 A---RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 + R ++ DI++L+R ++ DAL IP Y + ++ E L L Sbjct: 417 SYSTRKIKPGDIAILLRKFVNVSRYEDALEENGIP-YYTVGSKAFYDRPEIAGPLAWLDV 475 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDE-HAWDVVV----EEFDGYRQIWRKRGV 657 ++ P + L + G D+ L + E H D ++ E F R+++ K Sbjct: 476 IVDPLDDAAFARFLLSPAFGATFEDLFELKSKEKHISDAILKTTDERFKPLRELFIKYSE 535 Query: 658 MP-------MLRALMSARNIAENLLATAGGERRLTDI---LHISELLQEAGTQLESEHAL 707 + +L+ + L + GER + ++ L I++ L GT L Sbjct: 536 LKHVLSPSSVLQKFVDETEYLPKLASMKRGERAINNVKKMLEIAKELDRLGTSL------ 589 Query: 708 VRWLSQHILE-PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 R LS +I DS+ ++ + V+++T+HKSKGLE+P+V Sbjct: 590 -RELSSNIKAFIDSSEETEATLETEESDSVKLLTVHKSKGLEFPVV 634 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 29/120 (24%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAF--PRPLTVEELLVVTFTEAATAELRGRIR 77 I ASAGTGKT+ + + Y+++ AF L V ++ +TFT A+ E++ R+ Sbjct: 28 FISASAGTGKTYRLVSHYVQIF-----EEAFRHGEKLDVHNVVAITFTRKASKEMKERV- 81 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + R+ E+I++ + W L R + A + TIH FC+R+L Sbjct: 82 -------------------HLRINEKIENN-EPGDWKNLRSRLI-YAWISTIHSFCERIL 120 >UniRef50_Q1Q4K9 Similar to ATP-dependent DNA helicase subunit AddA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4K9_9BACT Length = 1198 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 200/903 (22%), Positives = 355/903 (39%), Gaps = 192/903 (21%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 ++ A AGTGKT + L LLL + P+ +++ +TFTE A +E++ R+ Sbjct: 52 VLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPIL--KIIALTFTEKAASEMKIRLMEE 109 Query: 80 IHELRIA----CLRETTDN---------PLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 + ++ A C E + Y EI+ +A + LA+ MD+A + Sbjct: 110 LEKIVAAMKGICRPEESSQVNNFISDLQTTYHTTYSEIERRAVQS----LAD--MDKAMI 163 Query: 127 FTIH---GFCQRMLNLNA-------FESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 TIH + RM + + + G +FE L E E W L Sbjct: 164 CTIHSFAAYILRMFPIESGVAPGFTVDEGSVFED-LFEKE-----------WP-DWLELE 210 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 + TWK N + E IK+ A R + +DT+ Q+ Sbjct: 211 LSLTSKNTVTWK---------NVLTRTELETIKS-------FAKRLSDFTIPLDTLTQKT 254 Query: 237 RDA----------VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 D ++AL+ G K Q + ++ + E +T + SL Sbjct: 255 GDPAVLDVLLNSYCDSINALLLKCGKPDNKLLLQLQ----EFLTIFNELKTQGFHYLSSL 310 Query: 287 E-KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE-------- 337 F + + K+G +E D L+A+ + + ++ R L + E Sbjct: 311 HYNFGKTI--SKAKSG--------WEEADVLVAQDIVKKCRILLRKLQRVDESFITTALN 360 Query: 338 -------TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 T + +G + FD +L+ + L++ + + +++ F ++DEFQDTD Sbjct: 361 LVLPFCKTFRQTYLSQGYISFDGLLTLARNLLQNNAYRSIRTSLKKNFSAILVDEFQDTD 420 Query: 391 PQQYRI---FRRIWHHQPET---------ALLLIGDPKQAIYAFRGADIFTY---MKARS 435 P QY I + +H +T L ++GDPKQ+IY+FR ADI Y +K Sbjct: 421 PIQYDIILFLSEMVNHHSDTIHGIPLEPGKLFIVGDPKQSIYSFRRADIEAYEHVVKQIC 480 Query: 436 EVHAHYTLDTNWRSAPGMVNSVNKLFSQ---TDDAFMFREIPFIPVKSAGKNQALRFVFK 492 A +L N+RS G+VN+VN LF + T+ + + +IP+ + + Sbjct: 481 NNEAPLSLLENFRSHSGIVNAVNDLFGEKIITEQQGL--QPKYIPIHAK----------R 528 Query: 493 GETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD------- 545 ++ P ++ ++ S + + A+ DW+ + NG D Sbjct: 529 IQSDPFQRIEII---SVSDTNGEELTAEAAREAEADWIAKWIKNNVFYDNGGDTSADAAT 585 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 + ++ DI++L+RS + ++ +IP + + T E + + LL+ + Sbjct: 586 SYKLKYKDIALLLRSFTQIRPYVESFKEHDIPFI-AEGEKYFYTTQEVIDFMNLLRTIEN 644 Query: 606 PERENTLRSALATSMMGL-----------NALDIETLNNDEHAWDVVVEEFDGYRQIWRK 654 P L L + GL + LD +D D + +F + + + Sbjct: 645 PYDTIALVGTLRSPFAGLTDNEIYLLKINDLLDYRKTISDNIDIDATIGDFYSFLRKYNV 704 Query: 655 RG-VMPMLRALMSARNIAENLLATAG---GERRLTDILHI----SELLQEAGTQLESEHA 706 R ++P+ + N TA GE++L ++ +L Q G L+ Sbjct: 705 RSRIIPVSHLISEIINDPRFAGITASAWQGEQKLANLKKFYRTACKLEQIQGISLKH--- 761 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHL--VQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 + + ++I E S SD+ L V+I+TIHKSKGLE+P+V L + Sbjct: 762 FINNMKKYIDEAREEGESPL----SDETLDVVKILTIHKSKGLEFPVVILG-----NLHG 812 Query: 765 QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDL------------------RLLYVAL 806 +A + D N + + L + E+ +L R+LYVA+ Sbjct: 813 EAKKENETLDSVAFDWNTSTTGIVLGKGEQQLRNLQSIILENKINERTWEEEKRVLYVAM 872 Query: 807 TRS 809 TR+ Sbjct: 873 TRA 875 >UniRef50_A2ST33 UvrD/REP helicase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2ST33_METLZ Length = 1057 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 147/586 (25%), Positives = 247/586 (42%), Gaps = 93/586 (15%) Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHP-LFEAIDQLLAEPLSIRDLVITRALAEI 335 TN+Y+ P L K +++ + E P HP + +L E L+ + R + + Sbjct: 267 TNAYKAP--LPKGGLERFKEKREVFKEFPTHPDESDPRTRLTFEILA----ALGRVASAV 320 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 E REK++RG L FDD++ + + +++ + + R+ ++DE QD DP Sbjct: 321 SERTVREKQQRGVLDFDDLIQKTRDLIENDA---VQKTLNARYRYILVDEVQDNDPVLTD 377 Query: 396 IFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH--YTLDTNWRSAPG 452 I R + E L ++GD KQ+IY FRGAD+ + A V A+ LDT++R+ P Sbjct: 378 IIRILCGDPKENNRLFIVGDAKQSIYLFRGADVSGF-NAFQTVFANDPVELDTSFRTVPE 436 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG 512 ++ VN +FS +F + I G+ R G + + L GE+ Sbjct: 437 IIRLVNHVFSS-----VFADPKEIWEAGYGELTPHR---AGHSGSVTLIRLPTGET--KA 486 Query: 513 DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 + A+ A+ I D + ++ ++ RP R DI+VL+ +R ++R AL Sbjct: 487 ESMRREARTLASWIFDTVS--RKKLSVYDKDGTCRPARFGDIAVLIEARTHMDKLRHALE 544 Query: 573 LLEIPSVYLSNRD-SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI--- 628 +P Y + S ++ E + LL+A++ PE + L L + G++ ++ Sbjct: 545 SYGVP--YTEEKGYSFYQKQEVFDFTNLLKAIVYPEEDIPLYGVLKSPYFGISDAELCRA 602 Query: 629 ---------------ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 T N D V + + +I G P + L +R IAE+ Sbjct: 603 AAGSGRPLIWRLRNYATANPDSKIGKAVGDLARWHAEI----GTEPFVPFL--SRLIAES 656 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQH--------------ILEPD 719 +A G +EA LE A+ R S + +E + Sbjct: 657 GIAAVYGGLPFG---------REATANLEKLVAIARSRSMNRPFSVYEYLGILDTCMEEE 707 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEA 776 + + E D V+I+T+H SKGLEYP++ L F +V F + Sbjct: 708 FDEREGMVPSEEDDR-VKILTVHASKGLEYPILALCFAGTGDGLKVSAPVFDAE---LGV 763 Query: 777 VLDLNAAPESVDLA----------EAERLAEDLRLLYVALTRSVWH 812 + + A E L+ +A+ LAE RL YVA+TR+ H Sbjct: 764 GIPVRLAGEGEGLSFVIECLKPEMKAKLLAERKRLFYVAMTRARDH 809 >UniRef50_Q71X99 ATP-dependent helicase/nuclease subunit A n=17 Tax=Listeria RepID=ADDA_LISMF Length = 1235 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 118/535 (22%), Positives = 237/535 (44%), Gaps = 60/535 (11%) Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLS-RLDSALRSESGEVLAAAIRTRFPVAMIDE 385 ++R + + E EK++RG L F+D+ L L+ +A + +F +IDE Sbjct: 350 TLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKEVLIDE 409 Query: 386 FQDTDPQQYRIFRRIWHHQPETA-LLLIGDPKQAIYAFRGAD--IF-----TYMKARSEV 437 +QDT+ Q I R + + E L ++GD KQ+IY FR A+ +F TY + + Sbjct: 410 YQDTNMVQETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTYQQDGNGS 469 Query: 438 HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 L N+RS ++++ N +F Q D + EI + A L F T Sbjct: 470 GIRIDLSQNFRSRKEVLDATNFIFHQLMDKHI-AEIDY----DAAAELTLGASFPETTDM 524 Query: 498 AMKMWLMEGESC--------GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 A ++ L++ +S + Q + A ++ + RP+ Sbjct: 525 ATELLLIDMKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDNKFPIFDKKMKQNRPI 584 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 + DI +L R+ A + +A+ + +IP Y +N FET E M+ L++ + P ++ Sbjct: 585 QYRDIVILARAMTSAPDMEEAMKVQDIP-FYANNNSGYFETTEVATMIALMKVIDNPYQD 643 Query: 610 NTLRSALATSMMGLNALD---IETLNNDEHAWDVV------------------VEEFDGY 648 L + L + ++GLN + + + + +D + +++ + + Sbjct: 644 IPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYKDTTVSETADKMSDFIQQLNNW 703 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHAL 707 R++ + + ++ + N E + GG++R ++ + + Q T Sbjct: 704 RELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRF 763 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFR-VQ 763 VR++ + + D +++ + + D +V+++TIH SKGLE+P+V + ++ N R + Sbjct: 764 VRFVERLEVRGDDLGTAKTLGEKED--VVRMMTIHASKGLEFPVVIVSGLSRKFNMRDIY 821 Query: 764 EQAFYHDRHSFEA----VLDLNAAPESVDLAEAER-----LAEDLRLLYVALTRS 809 + + F + + + P + A ++ +AE++R+LYVALTR+ Sbjct: 822 SKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMIAEEMRVLYVALTRA 876 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 29/143 (20%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT A L R++ L +A L V+ELL+VTFT A+ AE++ RI Sbjct: 30 LVAAAAGSGKT---AVLVTRIIEKLINESA---NLNVDELLIVTFTNASAAEMKFRIGKG 83 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + E L + D+ +R Q LL + A++ T+H FC ++ Sbjct: 84 LEE----ALAQNPDSTHLKR------------QVALL-----NYASISTLHSFCLEIIRK 122 Query: 140 NAFESGMLFEQQLIE--DESLLR 160 F++ + +LIE + S++R Sbjct: 123 YYFDADIDPNFRLIEPIESSMIR 145 >UniRef50_Q8ERW5 ATP-dependent helicase/nuclease subunit A n=1 Tax=Oceanobacillus iheyensis RepID=ADDA_OCEIH Length = 1243 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 195/915 (21%), Positives = 364/915 (39%), Gaps = 167/915 (18%) Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG-------EVLAAAIRTRFPVAMID 384 + + +++ A+ K+ + + F D+ L ES +A ++ +F ++D Sbjct: 344 VKQFQDSFAKVKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQLQRQFTEVLVD 403 Query: 385 EFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA------DIFTYMKARSEVH 438 E+QDT+ Q I + I Q + ++GD KQ+IY FR A D + + Sbjct: 404 EYQDTNMVQETILQLISDRQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKYKRFSNSDDPS 463 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 L N+RS ++ N +F Q D + EI + + E +P Sbjct: 464 IRIDLARNFRSRENVLLGANYIFRQLFDEDL-GEISYDDAAELIYGNKMYDDHPLEAKPE 522 Query: 499 MKMWLMEGESCGVGDYQSTM---------AQVCAAQIRDWLQAGQRGEALLMNGDDA--- 546 + + E D + T+ A+ A QI++W+ G + + M D Sbjct: 523 LLLIDNNSEDVEQSDNEETVEDLEKAQIEARAYAKQIKNWI--GTPEDEIPMQVVDKATG 580 Query: 547 --RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 R ++ DI +L+RS A+ + D L IP+ Y FE +E + ML L+ + Sbjct: 581 KQRDLQYKDIVILMRSMTWASTIADELQQQGIPT-YADLSTGYFEAIEIKVMLSFLKVID 639 Query: 605 TPERENTLRSALATSMMGLNALDIET-----------------LNNDEHAWDVV------ 641 P ++ L S L + ++GL + + L N++ D V Sbjct: 640 NPRQDIPLASILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSDTVKSLIRF 699 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 +E + +RQ R+ + ++ + + + A GG++R ++ + + + G + Sbjct: 700 MEMLNDFRQSARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRALYD--RARGYES 757 Query: 702 ESEHALVRWLS-QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760 S L R+L +E L + +V+I+TIHKSKGLE+P+V L + Sbjct: 758 TSFRGLYRFLRFIERMEERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPIVILGGMNK- 816 Query: 761 RVQEQAFYHDRHSFEAVL---DLNAAPESVDLAE-----------------AERLAEDLR 800 ++ R E L DL A + +D + + L+E++R Sbjct: 817 ------EFNQRDLSEKYLLHKDLGFASKYIDPVKRIQYPTLYYHAVRQAKFRDMLSEEIR 870 Query: 801 LLYVALTRSVWH-CSLGVAPLVRRRGDKKGDTDVHQS----ALGRLLQKG--EPQDAAGL 853 +LYVALTR+ +G P + ++ +K H S A R+ K + A L Sbjct: 871 VLYVALTRAKEKLLMVGTVPSIEKKLEKWQRIVDHPSWVLPAYFRMESKTYLDWVGPALL 930 Query: 854 RTC-IEALCDDDIAWQTAQTGDNQP--WQVN-DVSTAELNAKTLQRLPGDNW--RVTSYS 907 R E + ++I Q ++ + P WQ+ + + ++ K DN +V ++ Sbjct: 931 RHVGSEKIRTENIGNQVLESINQDPSDWQITMNHALDYMDMKDSSMDNDDNLKEKVFNWE 990 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVV---------------------EEPTLTPHQFP 946 ++ G+ D+ RL + A + V ++ L P P Sbjct: 991 SVETEQEGLKNDVDARLSYEYAYKQATVFRAKQSVTELKRQQEVKDDYSDQQILPPSHGP 1050 Query: 947 RGASP--------------GTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTE 992 G P GT LH++ + L T + + E +E + VL E Sbjct: 1051 IGKRPNFLQKKLKLSPAEKGTALHTVMQHLPMTHVLSEPEIEENIE--------KMVLEE 1102 Query: 993 WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP 1052 +T + +N + VE F+ I+ +I+ + + R+ P S P Sbjct: 1103 KLTRMEADSIN------------IRAVERFFHTEIASKIISG--NDMHREV-PFSIMLPA 1147 Query: 1053 LEFM-------QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 E + +++G ID + + + + +LDYK++++ ++ ++ +Q + H Sbjct: 1148 SEVYANWKDQSNEKVLIQGVIDCLLQADTGWIILDYKTDFIEDNPTSQKEQEL-----IH 1202 Query: 1106 RYDLQYQLYTLALHR 1120 RY Q LY A+ + Sbjct: 1203 RYQTQMTLYRRAIEQ 1217 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 27/123 (21%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + ++ LL A P ++ LLVVTFT AA E+R R+ + Sbjct: 20 LVAAAAGSGKTAVLVERIIQKLL------AEHNPTNIDALLVVTFTNAAAQEMRNRVGAA 73 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + A NP I K Q L L +R A++ T+H FC ++ Sbjct: 74 LEQALAA-------NP------SSIHLKKQ----LSLLQR----ASISTLHSFCLDIVKK 112 Query: 140 NAF 142 NA+ Sbjct: 113 NAY 115 >UniRef50_C0EKZ7 Putative uncharacterized protein n=1 Tax=Neisseria flavescens NRL30031/H210 RepID=C0EKZ7_NEIFL Length = 172 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 51/102 (50%), Positives = 69/102 (67%), Gaps = 1/102 (0%) Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 +E G LA A + +A+IDEFQDTDP QY IFR+I+ Q L L+GDPKQAIY+FR Sbjct: 4 NEHGNALAKAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQ-GCPLFLVGDPKQAIYSFR 62 Query: 424 GADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD 465 GADI+ Y++A + HYTL N+RS ++N ++ LF Q + Sbjct: 63 GADIYAYLQAAQDADRHYTLAVNYRSHAKLINGISALFKQKN 104 >UniRef50_C6PW57 UvrD/REP helicase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PW57_9CLOT Length = 1112 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 195/928 (21%), Positives = 360/928 (38%), Gaps = 197/928 (21%) Query: 311 EAIDQLL--AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE 368 ++I QL +E SIR + AL +I E K ++ L +DD+ + L+ S + Sbjct: 189 KSIKQLCESSEEGSIRKFCLAVAL-KIEEAYLNYKLKKDLLDYDDLETM---TLKVLSIK 244 Query: 369 VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP----ETALLLIGDPKQAIYAFRG 424 L R R+ ++DEFQDT+ Q I +I + ++GD KQ+IY FRG Sbjct: 245 NLRERYRNRYKTLLVDEFQDTNGIQKNILYKIAADDNGRLINKKIFIVGDFKQSIYGFRG 304 Query: 425 ADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF-IPVKSAGK 483 D + + ++ +L T +RS ++ +N +F++ D + P P K Sbjct: 305 TDYTIFKQVSKDIENEVSLSTCYRSKSEIIKGINSIFNELIDGYQ----PLKCPKDEEIK 360 Query: 484 NQALRFV-------FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 + ++ + +K L ES + Q + + + ++ + G Sbjct: 361 EKRIKLLTYEKIRRTSDNVYTEVKNMLQGKESKKFENIQQALKALKDSNKDITVKKNKEG 420 Query: 537 EALLMNGDDARP--VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 A++ R + DI +LVRSR + + L +P + ++ E Sbjct: 421 MAVIKAIKILRDKNLEFKDICILVRSRSVIPDIEEELKRRNVPYCIIGGV-GFYQKAEVD 479 Query: 595 EMLWLLQAVM-------TPERENTLRSALATSMMGLN-----ALDIE----TLNNDEHAW 638 E+L L + ++ T E L S+ ++ ++IE +L N A Sbjct: 480 EILNLYKVIVRGFSGEFTYEENKNFIQVLRGSLFEISDDTLLKMNIEKEESSLENLYEAL 539 Query: 639 DV---------------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 V ++E+ G ++ K V+ +++A++ N+ E +L G Sbjct: 540 KVYEDGMHSEKLLNTVTILEKLAGLKE---KLSVVQIIQAIIKECNVFEIMLCQDNG--- 593 Query: 684 LTDILHISELLQEAGT----QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 L +I +LLQEA QL + V ++ ++L+ ++ S+ D V+I+ Sbjct: 594 LQKFRNIEKLLQEAEKFDREQLFTLEQFVNYI--NLLDEENGDDSEAALDTEDSEAVKIM 651 Query: 740 TIHKSKGLEYPLVWLP-----FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAE- 793 TIH+SKGLE+ V +P ++ + + ++++S DL E+V+L E Sbjct: 652 TIHQSKGLEFKGVIIPKIHSDLLSMSKKDKPNLVYNKNSIILSKDL----ENVELTTPEY 707 Query: 794 ----------RLAEDLRLLYVALTRSVWHCSL-----GVAPL-VRRRGDKKGDTDVHQSA 837 + E RLLYVA+TR+ + L G P ++ DK + + Sbjct: 708 EEYLNSKLEKEIEETERLLYVAMTRAEDYVILTGGDDGKDPTPIKDETDKIKELNSFLKQ 767 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV--NDVSTAELNAKTLQR 895 L G + IE + DDI + +V +S +++ + LQ Sbjct: 768 LKYSFTVGNAD-----KELIEFINSDDI----------EDLEVIKRKISKVQIDKEKLQE 812 Query: 896 LPGDNWRVTSYSGL------------------------------QQRGHGIAQDLMPRLD 925 + +Y+ + ++ H IA+ L D Sbjct: 813 SLNYKGNIKNYASVSATRYMKYLKCPRRFYLESVLNINGKDYIEKENKHDIAEFLAE--D 870 Query: 926 VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV----REKLELG- 980 V + ++ Q ++ GT +HS+ E+L+ +D + EK EL Sbjct: 871 TAKMEVEDIEQKTEYKLSQSISASTIGTAVHSIIENLNNEVSIDEKDIIKAAAEKYELNY 930 Query: 981 --GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDT 1038 G E++ + + + K +E E S + Sbjct: 931 VDGIENKLKHYVEGY-----------------------KLLEKE----------KSSYGS 957 Query: 1039 LIRQFDPLSAGCPPLEFMQVRGMLKGFIDL--VFRHEGRY--YLLDYKSNWLGEDSSAYT 1094 L+ +F+ L +E + + GFID +F+ +G+Y + DYK+N++ Y Sbjct: 958 LVSKFNELDYSLSQMEHRKTS--ISGFIDRLEIFQKDGKYTAVITDYKTNFI------YG 1009 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 + + A Y+LQ LY A+ L Sbjct: 1010 NRKIKELTAA--YELQMLLYGKAVKELL 1035 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 31/154 (20%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AG+GKT + YLRLL G L +EE+ +TFTE A E++ RIR I Sbjct: 23 VSAGAGSGKTRVLTNRYLRLLEG---------GLQIEEIAAITFTEKAALEMKERIRKAI 73 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 +E +I+ D QW+ ++ ++ A + TIHGFC ++ N Sbjct: 74 NE-KISS-----------------SDFDHKKQWMKHLDK-LNRANISTIHGFCSNIVREN 114 Query: 141 AFESGMLFEQQLIE--DESLLRYQACADFWRRHC 172 A G+ F +I+ D+++ +A + HC Sbjct: 115 AAFLGVDFSFSIIDGIDKAMFLREASQN-AAEHC 147 >UniRef50_A8SI11 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SI11_9FIRM Length = 1228 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 152/582 (26%), Positives = 233/582 (40%), Gaps = 108/582 (18%) Query: 309 LFEAIDQLL----AEPLSIRDLVITRA---LAEIRETVAR---EKRRRGELGFDDMLSRL 358 LFE + QL+ AE + R + + R A +R+ AR KR R L F D Sbjct: 337 LFEQMTQLICCSEAEAETDRQITLPRLRALFAAVRDFDARFTARKRERKLLEFSDFEHLA 396 Query: 359 DSALRSESGEV--LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPK 416 LR+ G+ L IR + M+DE+QDT+ Q ++R + + L L+GD K Sbjct: 397 LRLLRTPEGKPTPLCENIRQDYAAVMVDEYQDTNALQDALYRCLAAPAGDN-LFLVGDLK 455 Query: 417 QAIYAFRGAD------------IFTYMKARSE-------VHAHYTLDTNWRSAPGMVNSV 457 Q+IY FR A+ + KAR A LD N+RSAP +V + Sbjct: 456 QSIYRFRQAEPGIFRQKLDSWPLLPGAKARPRPPEGTPGTDALLALDANFRSAPQVVAGI 515 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 N F Q P + + G Q L GE Q ++++ + D T Sbjct: 516 NYFFEQL-------MTPELGDTAYGDGQRLVCGAPGEYQGSVEVQFLPD------DETET 562 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 A A +I + AG+ + G RPVR D VL+ +R E +ALT IP Sbjct: 563 DAGWIAERIAQLVSAGEP----VREGSTTRPVRYEDCCVLLAARTEFPAYVEALTARGIP 618 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN---- 633 VY R+++ + ++ LL+ + P ++ L +A+ M G D+ L Sbjct: 619 -VYADARENLMLAPHIRPLIALLKVIDDPSQDIYLAAAMLGPMFGFTEDDLVRLRARSRQ 677 Query: 634 ----------------------DEHAWDVVVEEFDGY-------RQIWRKRGVMPMLRAL 664 ++ A D E+ + RQ+ R +L + Sbjct: 678 VQAEPDKKPARISLYGALLLALEDPADDPFTEKVKDFYAHLTALRQMARSAPAEQLLEEI 737 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASS 724 ++ L G RR D + +G S ALVR + S+ Sbjct: 738 FASTGYLAALGVLENGARRREDARRFASFCATSGAGGIS--ALVRAIDAAA----QAGST 791 Query: 725 QQMRLESDKH--LVQIVTIHKSKGLEYPLVWLP----FITNFRVQEQAFYHDRHSFEAVL 778 Q + S H V I+TIH+SKGL++P+V++ +++ H +F A L Sbjct: 792 GQDTVPSGVHPGCVSIMTIHRSKGLQFPVVFVGDTARKFNASDIRQPVLVH--RTFGAGL 849 Query: 779 DL----------NAAPESVDLAEAERL-AEDLRLLYVALTRS 809 L AA ++ A L +E +RLLYVALTR+ Sbjct: 850 RLRPENGEGAYKTAAYTALANVHARELRSEQMRLLYVALTRA 891 >UniRef50_A3CVM7 UvrD/REP helicase n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVM7_METMJ Length = 1080 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 113/452 (25%), Positives = 199/452 (44%), Gaps = 47/452 (10%) Query: 323 IRDL-VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA 381 +RDL V+ +A + +V EKRR L FDD+++R R + G+++ R+RF Sbjct: 313 LRDLGVVFKAFLD---SVEAEKRRMNALDFDDLVNRTHRLFR-DRGDIVETHFRSRFRFI 368 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH- 440 ++DEFQDTDP Q I R + L ++GDPKQ+IY FR AD+ + R + Sbjct: 369 LVDEFQDTDPVQIAIIRTLLGDSAN--LFVVGDPKQSIYLFREADVTQFSHTRDLIERDL 426 Query: 441 ----YTLDTNWRSAPGMVNSVNKLFSQ-TDDAFMFREIPFIPVKSAGKNQALRFVFKGET 495 LD N+RS P +V N +FS +A E + P+ + F+ + Sbjct: 427 GGETVALDVNFRSTPEVVGFTNAVFSALMAEAGRPWEFLYEPLHA----------FRRDD 476 Query: 496 QPAMKMWL---MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRAS 552 ++++ L + + G + A++ A +IR ++ RGE + + RP Sbjct: 477 AGSVELLLCQKIRDRAAG----RRAEAEMAARKIRSLVE---RGEKRVSRDGEVRPAGYG 529 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 D++VL+ R A AL +P ++ +E E ++ +L+ + + L Sbjct: 530 DVAVLLERRTNLAYYEWALARYGVP-YHVHAGLGFYERQEVYDLYNILRFLANNLDDAAL 588 Query: 613 RSALATSMMGLNALDIETLNNDEHA--WDVVVEEFDGYRQIWRK-----RGVMP--MLRA 663 L + G + + + A W+ + + R+ R + P +LR Sbjct: 589 YGVLRSPYFGFSDARLFHIARAPGASLWERLQAAAEPAAATLREWLSLSRRLPPARLLRR 648 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 ++ I AGGE+ ++ + L ++A + V L + I D Sbjct: 649 IVDESGIFVVFGGMAGGEQAAANVEKLIALARDA--DCSTLAGFVAELGRSIDAGDREGD 706 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 + +D V I+T+H +KGLE+P+V +P Sbjct: 707 APLDLASADS--VSIMTVHAAKGLEFPVVVVP 736 >UniRef50_UPI0001C4301D ATP-dependent nuclease subunit A n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4301D Length = 1135 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 193/889 (21%), Positives = 362/889 (40%), Gaps = 171/889 (19%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRP-----LTVEELLVVTFTEAATAELRG 74 +I A AG+GKT + + LL AF P T+EE+ +TFTE A E++ Sbjct: 19 VIAAGAGSGKTRVLTERIMYLL-----EKAFHEPSSSIAATIEEVAAITFTEKAAREMKD 73 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 R+R I E + E A+AA W E ++ A + T H FCQ Sbjct: 74 RVRKRISEKEVLAQTE-----------------AEAAFWREQKEL-VERAHISTFHSFCQ 115 Query: 135 RMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 ++L A + + + ++I++ + Q D ++H + + F ++ + Sbjct: 116 QLLGQYAMAAKLPPKIRIIDE--VEAKQLKRDVLKKHLQDVEFTASAKEFFSYMSKDQFI 173 Query: 195 R-------DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 I+ + GE V++ DD + A +I TV+ + A+ + Sbjct: 174 STMEDIHASISELVIGEDAVLQLQA-DDMLHSQAEAVKEKQIKTVEAFHKAALDLIPQFP 232 Query: 248 ESSGIDRRK---FNRSNQA--------------KWIDKISAWAEEETNSYQLPESLEKFS 290 + G+ + + +R +A W+ + ++ +P + F Sbjct: 233 SAEGLTKAQAGHVDRLQEAFLSPPSPSGPNEYMDWLIGVMPKRTDKKWQEAIPALFQLFE 292 Query: 291 QRF--LEDRTKA-GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRG 347 + + L+D KA GGE + EA LL + + L + REK RG Sbjct: 293 EHWKPLKDDWKAVGGEVE---IDEAASLLLGRFIDL--------LCDFHLAYKREKELRG 341 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 + F D+ + S L ++ + A + +F ++DEFQDT+ Q + RI P + Sbjct: 342 VVDFSDLQQKAVSLLENKE---IQEACQKQFRHMLVDEFQDTNRLQLEMLERI---NP-S 394 Query: 408 ALLLIGDPKQAIYAFRGADI-----FTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLF- 461 ++GD KQ+IY FRGA++ E ++ N+R+ +++ VN LF Sbjct: 395 YRFIVGDTKQSIYRFRGANVRLMNELEQDAVEQENAEAIEMNINYRTCKPIIDGVNALFQ 454 Query: 462 -SQTD---DAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 + TD +++ R + A + Q M++ L+ E D ++ Sbjct: 455 SAMTDHITESYQTRYAALSANREAEQPD----------QKQMELLLLNKEET---DEEAG 501 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 + A +I + + + Q + G+ + D++VL+ +R + ++ A + IP Sbjct: 502 SYEALAHRINEMITSQQ---PRVFKGESWQAPAFKDMAVLIPARTDLLKLERAFSKQNIP 558 Query: 578 -SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 +VY +E E + L LL+ + P + + S L + ++GL D T+ + Sbjct: 559 YTVY--GGIGFYERQEIIDFLTLLRWMNRPFEDVYVLSLLRSPLIGLTMNDFVTIAKQKE 616 Query: 637 AWDVVVEEFDGYRQIWRKRGV-----MPMLRALMSARNIAE------------------- 672 A + + + G+ +P + L +A + E Sbjct: 617 ATQSFADYLYQLSESMPQTGLADSSDLPAQQILDAALKLKEWLLNYVPFSIKGSPGETFD 676 Query: 673 ----------NLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 +LL + G +++ ++ + +++++ + L S ++ ++ + + D Sbjct: 677 RMIKETGLVHSLLIQSNGLQKVKNVEKLIQMIEQ--SHLRSLEEIIHFIDERMALNDKEG 734 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS--FEAVL-- 778 ++ R E D V I+TIH SKGLE+P+V+LP + E++ D+ S F+A L Sbjct: 735 EAEMERTEGDA--VNIMTIHASKGLEFPIVYLPQL------ERSVQGDKGSVRFDAKLGI 786 Query: 779 ---------DLNAAPESV---------DLAEAERLAEDLRLLYVALTRS 809 +L A P+ + + A E E RL YVA TR+ Sbjct: 787 VWSLEEETDNLEARPKKLVTPGFELVKEAAGLESEEESKRLFYVAATRA 835 >UniRef50_A1HTK7 UvrD-like DNA helicase, C terminal n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTK7_9FIRM Length = 1246 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 213/923 (23%), Positives = 342/923 (37%), Gaps = 221/923 (23%) Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIF 428 +A A+R ++ ++DE+QDT+ Q I + +P+ ++GD KQ+IY FR A+ Sbjct: 385 VALALREKYEEVLVDEYQDTNAVQETILELV--SRPDRPNRFMVGDVKQSIYRFRLAEPG 442 Query: 429 TYMKARSEVHA-------HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI--PFIPVK 479 +++ + A L N+RS PG++ +VN F+F ++ P Sbjct: 443 LFLEKYNRYPAAAGGSERRIDLAQNFRSRPGILAAVN---------FLFSQLMTPRAAEM 493 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEG-----------------------------ESCG 510 G +AL G P + G ++ Sbjct: 494 GYGAAEALN---PGPDYPPCDQLTLAGPVEVHLINQAEAVAAAPAADVVEDEAEQQDADA 550 Query: 511 VGDYQSTMAQVCAAQ------------IRDWLQAGQRGEALLMNGDDA-RPVRASDISVL 557 GD + +++ AQ R L + G + D A RP+ DI +L Sbjct: 551 GGDEPANSSELVTAQELTAFEREAWLIARRLLALKEAGHVVYDKHDKAYRPLAWRDIVIL 610 Query: 558 VRSRQEAAQVR-DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 +R+ Q A V D L IP+ Y FE E Q ML LL + P ++ L L Sbjct: 611 LRTVQGKAGVLLDVLRQAGIPA-YADVDGGYFEETEVQVMLSLLAVIDNPRQDIHLAGVL 669 Query: 617 ATSMMGLNALDIET--LNNDEHAW-------------------DVVVEEFDGYRQIWRKR 655 + ++GL A D+ L D W V +E D +R + R+R Sbjct: 670 RSPLVGLTAGDLAAIRLCKDGDLWTALTAAAGADIAEPLRQKIGVFLERLDRWRSLARRR 729 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH--ALVRWLS- 712 GV ++ ++ + + GG R ++ +L + Q E+ + L R+L Sbjct: 730 GVAELIWSIYRETGYYDYIGGMPGGALRQANL----RVLYDRARQFEATNFRGLFRFLRF 785 Query: 713 -QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFR-VQEQAF 767 + + + S+ + + L + +V++++IHKSKGLE+P+V L + N R QE Sbjct: 786 LERLRDRGSDMAVARA-LGEGEDVVRVMSIHKSKGLEFPVVVLADLGKQLNLRDTQELVL 844 Query: 768 YHDRHSFEAVLDLNAAPESV--DLAEA---------------ERLAEDLRLLYVALTRSV 810 H +L P+ + DL ++ E AE+LR+LYVALTR+ Sbjct: 845 CHK--------ELGLGPKVIRPDLRDSYPTLARWGIEHKLTLEAKAEELRILYVALTRA- 895 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA-----------------AGL 853 L + V++ D+ D + L DA A L Sbjct: 896 -REKLILVGSVKKLADRCSDWCAMVGWQAQALPDALITDAKNYLDWLGPAIVRHPGGAPL 954 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 R A CD+ + A N WQV + +N + P DN L+ Sbjct: 955 RAL--AGCDETPTAKLAAL--NAAWQVITHAADSINPVAPAQ-PADNPLAVCLKELKPLP 1009 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-------------------------- 947 G + + RLD A+V + LT + R Sbjct: 1010 GGDSAWVAARLDWRYPYAAAVGQPAKLTVSEIKRRFALADQDGEQWYPPRLAARPRFIQT 1069 Query: 948 -----GASPGTFLHSLFEDLDFTQPVDPNWVREKLE-LGGFE----SQWEPVLTEWITAV 997 A GT +H++ + L+ + + VR +LE L E Q V E I A Sbjct: 1070 AGKLTAAEVGTAMHTVMQHLNLAGDMSASGVRRELERLVAAEILLPEQAAAVDVEAIAAF 1129 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 +PL G L + R +++ LP + DP AG F+Q Sbjct: 1130 FTSPL---GQRLLNAAWRRRELAFCQVLPAA-------------SIDPALAGTDETVFIQ 1173 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 G +D +F L+DYK T Q RYD+Q +LY A Sbjct: 1174 ------GVVDCLFAEADGLILIDYK-----------TDQVKDGFELVERYDVQLKLYAAA 1216 Query: 1118 LHRYLRHRIAD-YDYEHHFGGVI 1139 + LR + + Y Y G ++ Sbjct: 1217 METILRQPVKEIYLYVFSTGQIV 1239 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 27/118 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + + +L P+ V+ LLVVTFT AA AE+R RI Sbjct: 20 LVAAAAGSGKTSVLVQRIIDRILDKTA------PVNVDALLVVTFTNAAAAEMRERIAQA 73 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + A L + ER Q LLL ++A++ TIH FCQ ++ Sbjct: 74 L----TAELAKGERTRYLER------------QLLLL-----NQASISTIHSFCQSVV 110 >UniRef50_B0NWV2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NWV2_9CLOT Length = 1188 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 196/858 (22%), Positives = 357/858 (41%), Gaps = 135/858 (15%) Query: 342 EKRRRGELGFDDM----LSRLDSALRSESGEVLAAAIRTR---FPVAMIDEFQDTDPQQY 394 +K+ + FDDM L L E V + R + + IDE+QD++ Q Sbjct: 352 KKKNENIMDFDDMEHFALELLIDHYDEEGNPVPSKIAREKSDGYEEIYIDEYQDSNYIQD 411 Query: 395 RIFRRIWHH-QPETALLLIGDPKQAIYAFRGA------DIFTYMKARSEVHAHYTLDTNW 447 I R + + + ++GD KQ+IY+FR A + + + + E + L N+ Sbjct: 412 AILRSVSKESEGGHNMFMVGDVKQSIYSFRLARPELFLEKYHGYQQKGEEYQLIELRNNF 471 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 RS ++ VN +F Q M ++ I +N AL + E + L+ E Sbjct: 472 RSRSEVLTFVNDVFYQ----IMHEDLGNIEY---TQNVALVPTMEFEQGCDAQTELLLLE 524 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGE-ALLMNGDDA------RPVRASDISVLVRS 560 S V D + + A I + GE +++ G D R + SDI +L+RS Sbjct: 525 SNEVKDSEEDAVILEARMIATRIHEMIDGEDPMMVTGKDEEGNMILRKAKYSDIVILLRS 584 Query: 561 RQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 + A+V + L IP+ + +N+ F+T+E + +L LL V + L + L + Sbjct: 585 MKTNAEVIQKELMNAGIPA-FANNQKGYFDTVEIRTLLSLLSVVDNIYMDIDLAAVLRSP 643 Query: 620 MMGLNALDIETLNND---EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL-- 674 M+G++ ++ L D + ++ + E D + + ++ +LR + + + + Sbjct: 644 MIGMSEEELGRLKVDGEKDSLYECLCETKDKMEKSKKALELLDLLRDAKTYLPLTQLIWL 703 Query: 675 -LATAG----------GERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNA 722 L +G G++R +IL + E + +Q++ VR++ Q E D + Sbjct: 704 ALEKSGYYHYAGAMPQGKKRQGNILMLVEQAKAFESSQIKGLFHFVRFIEQ-CREYDMDY 762 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNFRVQE---QAFYHDRHSFEA-- 776 + D+ LV+I +IHKSKGLEYP+V++ I F +++ +H + A Sbjct: 763 GEANT-MSEDQDLVRISSIHKSKGLEYPIVFVSKIHQKFNLRDGNGSMIFHGDYFIGADH 821 Query: 777 ---VLDLNAAPESVDLAEA----ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 V +L + E L E+LR+LYVA+TR+ L G KK Sbjct: 822 IDPVYRTRKKTILKNLIKNQMTRESLGEELRVLYVAMTRAKEKLILT--------GIKKD 873 Query: 830 DTDVHQ----SALGRL--------LQKGEPQ-DAAGLRTCIEALCDDDIAWQTAQTGDNQ 876 D D + +A+ RL ++K P R I L +D+ WQ Q G+ Sbjct: 874 DIDWNAKGEVTAIDRLSGRSYFDWIKKALPMIPKQDYRLKIYTL--EDLLWQ--QEGNEL 929 Query: 877 PWQVN-DVSTAELNAKTLQRLPGDNWRVTSYS------------GLQQRGHGIAQDLMPR 923 ++N + LN ++P +N + S G + + + Sbjct: 930 LHEMNRQIFYERLN----DQIPNENVKALKESFAYHYRNEAETKGRLKYSVSEIKRMSQA 985 Query: 924 LDVDAAGVASVVEEPTLTPHQFPR------GASPGTFLHSLFEDLDFTQPVDPNWVREKL 977 D + +SV E F + AS GT +H +FE LDF++ + E + Sbjct: 986 ADTEEVMYSSVFMEKEKRIPSFVKKTERISAASKGTIIHKVFELLDFSKDYTMKSLNEDI 1045 Query: 978 E----LGGFESQWEPVLT-EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 E LG + ++E V+ + I A+ ++ L + +Q K+ + +P S+ Sbjct: 1046 ERWISLGKLKKEYEKVIYRKEILALTRSELGKRMKEAAQKKLLYKERQFVTGIPFSDMDK 1105 Query: 1033 ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 ++ D + +++G ID+ F E + L+DYK++ + E Sbjct: 1106 EAKTDDFV--------------------VVQGIIDVYFEEEDKIILVDYKTDRVREGEED 1145 Query: 1093 YTQQAMAAAMQAHRYDLQ 1110 + A M++++ L+ Sbjct: 1146 ILIRRYRAQMESYQQALE 1163 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 27/118 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT A L R++ + P+ V+ LLVVTFT+AA E++ RI + Sbjct: 19 LVSAAAGSGKT---AVLVERIIQKITDE---KHPIDVDHLLVVTFTKAAAGEMKERIMAA 72 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E +RE N + + L I +A + TIH FC ++ Sbjct: 73 LDE----KVREFPGNQHFVKQLSLI-----------------HKAQITTIHSFCMNLI 109 >UniRef50_B0PD60 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PD60_9FIRM Length = 1174 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 132/475 (27%), Positives = 199/475 (41%), Gaps = 67/475 (14%) Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA--DIFTYMKARSEVH- 438 +IDEFQDT+ Q IFR + Q E+ L ++GD KQ+IY FR A ++F K R + Sbjct: 398 LIDEFQDTNAAQEIIFRAV--SQNESNLFMVGDVKQSIYRFRQAMPELFMEKKKRFAPYD 455 Query: 439 -----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALR--FVF 491 A L N+RSA + VN FSQ M EI + + +AL F Sbjct: 456 GKTFPAKIVLGKNFRSAQAVTGCVNFFFSQ----LMSGEIGEVDYN---QEEALSPGASF 508 Query: 492 KGETQPAMKMWLMEGESCGVGDYQSTM--AQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 + + L++ S G+ ST A+ A QI L+ G L+ +G R V Sbjct: 509 PEGIEAGCTLRLIDA-SQYAGELDSTQLEARDVAEQIAGMLERGD----LVADGGVTRRV 563 Query: 550 RASDISVLVRSRQEAAQVR-DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 R SDI VL+RS + AQ DALT +P V+ + + E ++ LL+ + P Sbjct: 564 RPSDICVLLRSPAQKAQAYFDALTRRGVP-VWAEPKSGFLTSREIAPVVALLRVLGNPTL 622 Query: 609 ENTLRSALATSMMGLNALDIETLN-NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 + SAL + + GL A ++ + D A + R + + L Sbjct: 623 DIDFASALLSPLFGLTADELTQIRLTDRRAPLYIAAAKAAEAGDPRAANAVDTIARL--- 679 Query: 668 RNIAENLLATA--------------------GGERRLTDILHISELLQEAGTQLESEHAL 707 R A N A A G RR +L + + Sbjct: 680 RRFASNATADAVIRRIYEECDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLSGF 739 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI---------- 757 + ++ + I A + M ++D +V++++IH+SKGLE+P+V+L Sbjct: 740 IGFVDRLIDRGGDFAPAASMSEQAD--VVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLN 797 Query: 758 -TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAER--LAEDLRLLYVALTRS 809 E F R FE + P E ER L+E+LR+LYVALTR+ Sbjct: 798 GNTLLHSELGFACVRRDFELMKQYTTVPMQALRLELERSMLSEELRVLYVALTRA 852 >UniRef50_A7VJ43 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VJ43_9CLOT Length = 1247 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 208/917 (22%), Positives = 384/917 (41%), Gaps = 171/917 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLG--GSAAFPRPLTVEELLVVTFTEAATAELR 73 G L+ A+AG+GKT + L +++G+ G+ A + ++E+LVVTFT AA A+++ Sbjct: 17 HGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKA-EEKIDIDEVLVVTFTRAAAAQMK 75 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 +I + + D+P E ++++ L L R A + TI FC Sbjct: 76 EKIADKLEQA-------AEDHPEDEHIVKQ----------LSLLPR----ADIMTIDSFC 114 Query: 134 Q-------RMLNLN-AFESGMLFEQQLIEDESL-----LRYQACAD--------FWRRHC 172 +M+ ++ +F+ E LI+++ L +YQ +D F R+ Sbjct: 115 LGIVKDYFQMIGIDSSFDIADNAEMDLIKNDILDEVLEQKYQEASDEFIGLVDSFARKES 174 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA--SRHAQIVARID 230 RE+ ++ G R IN + E + + + TL + QIVA D Sbjct: 175 DEKIRELVYQIYRVASGYPKPERWIN---EAETALEVSTKEELYTLKWYRDYMQIVA--D 229 Query: 231 TVKQQWRDAVGELDALIESSG-------------IDRRKFNRSNQAKWIDKISAWAEEET 277 T+ A+G+ + +E +G +D QA+ +D+ + + Sbjct: 230 TLDS----AIGQAEQCLEIAGEADGPAGYDPIIRLDLELLRNLRQAEDMDEAYKRVSKFS 285 Query: 278 NSYQLPESLEKFSQRFLED--RTKAGGETPRHPLFEAIDQLLAE------PLSIRDLVIT 329 N ++ + + Q++++ +T G LF +L+E PLS L +T Sbjct: 286 NLKRIA-ACDPEKQQYVKTTMQTYRGSVKDMMALFRPTGVILSECAMMKGPLSAL-LSLT 343 Query: 330 RALAE--IRETVAR---EKRRRGELGFDDMLSRLD---SALRSESGEVLAAAIRTRFPVA 381 R+ E E + R E R E +D + + D + SE+G+ +A R+ Sbjct: 344 RSYMERLKEEKLDRNLYEFRDISEFAYDILCAGTDENGCVIPSEAGKTVA----RRYREI 399 Query: 382 MIDEFQDTDPQQYRIFRRI-WHHQPETALLLIGDPKQAIYAFRGA--DIF-----TYMKA 433 +IDE+QD++ Q I + H + + ++GD KQ+IY FR A D+F TY Sbjct: 400 LIDEYQDSNFLQEDILNCVTGHGEDRKNMFMVGDIKQSIYRFRMARPDLFLNKYNTYSDR 459 Query: 434 RSEVHAHYTLDTNWRSAPGMVNSVNKLF----SQTDDAFMFREIPFIPVKSAGKNQALRF 489 L N+RSA +++++N++F S+ + E + + KN Sbjct: 460 EDAEDQKILLSNNFRSAGKVIDTINQIFEPLMSENLGGIDYDESAKLHIGRQDKNN---- 515 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQS-TMAQVCAAQIRDWLQAGQRGEALLM--NGDDA 546 + G ++ + E + +S T + A I D + +G+ L +GD+ Sbjct: 516 MGYGSEILIVRNDCADSEKSQPEEIRSLTNVDIEARMIADEIYELVKGDKPLYIPDGDNG 575 Query: 547 RPVRAS--DISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 R S DI+VL+RS ++ A +A IP +++ + F+ +E +L +L + Sbjct: 576 ETRRVSYRDIAVLMRSVKKNAKAFEEAFAERGIP-LFVESESGYFDAIEISTLLDMLAVI 634 Query: 604 MTPERENTLRSALATSMMGLNALDIETL------NNDEHAWDVV---------------- 641 ++ L + L + + G+ ++ + + +H ++ Sbjct: 635 DNSHQDYALAAVLRSPLAGVKEQELAEIVGIYDRDFKDHEKNLARTASFYQKVCYYAEKP 694 Query: 642 -VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG----------GERRLTDILHI 690 E + RQ R + MS + ++L G G+RR +I Sbjct: 695 DSEASEELRQFLRMLDSWKADKNYMSISELLHSILEQTGYYWFVGAMQSGKRRQA---NI 751 Query: 691 SELLQEAGTQLESE----HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 L+Q+A T +S +R++ + L+ + ++ L D V ++T+HKSKG Sbjct: 752 DMLIQKADTYEDSSFRGLFNFLRYMDR--LKTNDLDFAEASVLGDDDDSVVMMTMHKSKG 809 Query: 747 LEYPLVWL--------------PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA 792 LE+P+V++ P N + DR + A A + + A Sbjct: 810 LEFPVVFVSGLANRFSNLDALSPVTVNADSYLAGYAIDRKN-RAKKKTFARAAMLSVMNA 868 Query: 793 ERLAEDLRLLYVALTRS 809 E+LAE++R+LYVAL+R+ Sbjct: 869 EKLAEEIRILYVALSRA 885 >UniRef50_Q9K8M6 ATP-dependent nuclease subunit A n=1 Tax=Bacillus halodurans RepID=Q9K8M6_BACHD Length = 1129 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 138/536 (25%), Positives = 232/536 (43%), Gaps = 82/536 (15%) Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEF 386 V+T + ++ AR K R+ L D +A+ E + + +F M+DEF Sbjct: 324 VLTAFIDLLQYFAARYKERKQLLSAFDFSDLQRNAVCLLDQEDVQKSCHDQFKHMMVDEF 383 Query: 387 QDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYM-----KARSEVHAHY 441 QDT+ Q + +I P + L+GD KQ+IY FRGAD+ T M +AR E A + Sbjct: 384 QDTNQMQMDVLTKI---NP-SYQFLVGDGKQSIYRFRGADV-TLMNEMSEQARDEKEAQF 438 Query: 442 T-LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF---IPVKSAGKNQALRFVFKGETQP 497 ++TN+R+ ++++VN LF+ +P+ IP + K +R Sbjct: 439 IEMNTNYRTTAPVIHAVNGLFAHAMKDVSVHSVPYASLIPAREPEKEDDIRVSL------ 492 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRD-WLQAGQRGEALLMNGDDARPVRASDISV 556 + + QV I D L+ + GE + NG+ R D+++ Sbjct: 493 ---------HITKTTEKEKDNDQVPYHHIADRLLEMVRTGEPTVWNGESWRSPNWGDMAI 543 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L+ R E + AL+ IP ++ +E E + + LL+ + P E L + L Sbjct: 544 LIPVRTELLALERALSDKGIP-YHVYGGVGFYERQEILDFVTLLRWLDRPFEELYLFALL 602 Query: 617 ATSMMGLNALDIETLN---NDEHAW-DVVVEE------------FDGYRQI--WRKRGV- 657 + M GL D+ + +DE W D+VV++ D + ++ W R V Sbjct: 603 RSPMFGLTLDDLMFVKERFSDELTWFDIVVDKEMASLFAERPVVTDAFVRLRTWLDRWVP 662 Query: 658 -------MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 + L L + +L G +++ ++ + +++ T + E L R+ Sbjct: 663 FRPVPSLIDHLYELFDQTGLKMSLFVQENGMQKVRNVEKLIDVMSGWKTNV-LEELLQRF 721 Query: 711 -LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF--RVQEQAF 767 L Q +E + A +Q+ ++V I+T+H SKGLE+P+V LP + R + Q Sbjct: 722 DLIQAEVEKEGEAEVEQVA----GNVVHIMTVHASKGLEFPIVCLPQLDRVPQRDKGQVR 777 Query: 768 YHD------RHSFE---AVLDLNA-----APESVDLAEAERLAEDLRLLYVALTRS 809 Y RH +E V+ L E DLA +AE+ RL YVA TR+ Sbjct: 778 YDREMGIVLRHEWEEDDGVVKLETPAFALVKEQADLA---TMAENKRLFYVAATRA 830 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 33/138 (23%) Query: 20 LIEASAGTGKTFTIAALYLRLL------LGLGGSAAFPRPLTVEELLVVTFTEAATAELR 73 ++ A AG+GKT + ++ + A+F V+EL+ +TFTE A E++ Sbjct: 21 VLSAGAGSGKTRVLTERFVHICEQKWQETQNDLEASFG--AEVDELVAITFTEKAAREMK 78 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDD---KAQAAQWLLLAERQ--MDEAAVFT 128 RIR +RLLE++++ A Q + +++ ++ A + T Sbjct: 79 ERIR--------------------QRLLEKVEEAKAHGDAGQMIFWQKQKEGLERARIST 118 Query: 129 IHGFCQRMLNLNAFESGM 146 H FCQR+L A E+G+ Sbjct: 119 FHSFCQRLLLEYAQEAGI 136 >UniRef50_B9XFA1 Recombination helicase AddA n=1 Tax=bacterium Ellin514 RepID=B9XFA1_9BACT Length = 1211 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 204/902 (22%), Positives = 366/902 (40%), Gaps = 168/902 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G L+ A AGTGKT T+ L L+ P +++E+L+VTFT+AA AE+R R Sbjct: 14 RGNVLVVAGAGTGKTRTLVERCLHCLVEEKP------PTSLDEILMVTFTDAAAAEMRQR 67 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR+ L + L + DD Q + D A + T+H FC + Sbjct: 68 IRAR----------------LEQELAKHTDDLRWTEQLTIF-----DTAHIGTLHSFCLQ 106 Query: 136 MLNLNAFESGMLFEQQLI----EDESLLRYQACADFWRRHCY------PLPREIAQVVFE 185 ++ + +E + + QL E+ LL + + + H +++ QV Sbjct: 107 LVRQHFYE--LELDPQLTVLPEEEARLLADETLENLLQSHYAGDAEGAEAVQQLIQVQGR 164 Query: 186 TWKGP-----------QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 W P LRD +L+ + + +P P A ++ I + Sbjct: 165 GWDQPIRTLVLRLHHYTQTLRDPADWLKSQLEMFASPEP-----AQWRTWLIEGITDWRN 219 Query: 235 QWRDAVGE--------------LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 +W A+ L +L+E+ +++ N W + W + + Sbjct: 220 RWLPALQSEKSDNLKATECCRALASLLENPSLEQGAEALEN--IWAADLE-WPRGKKTDW 276 Query: 281 QLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA 340 + P LE F + R+ A PL E D + + S+ L + + Sbjct: 277 RKP--LEDFLEEATFLRSLARKTKEVDPLAEDWDWIRGQMTSLLGLA-----EQFSAAFS 329 Query: 341 REKRRRGELGFDDMLSRLDSAL---RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 KR G + F D+ L ++ +A R + +DE+QD + Q I Sbjct: 330 LAKRELGVVDFHDLEQHSLQLLWDRNTKQATAVARQWRKKLRFVFVDEYQDINDAQDAIL 389 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGAD--IF-TYMKA-RSEVHAHYTLDTNWRSAPGM 453 + + E+ L+GD KQ+IY FR AD IF Y++ R L N+RS + Sbjct: 390 KALSREGEESNRFLVGDVKQSIYRFRLADPHIFQNYIETWRGADGKAIPLVDNFRSREAI 449 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 +N +N LF + M R+I +P + LRF G + + + + ++ V Sbjct: 450 LNFINSLF----EGLMRRDIGSVPYDDEAR---LRF---GNAENRVDLSCAKEDAPRVEL 499 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA--------------------------- 546 + + A + + G R +MN ++A Sbjct: 500 HLRLKGSLEAKDMPEGEGEGSRAWTEMMNLEEAEKEARLIGKRLLALKAEKHLAWDEHTK 559 Query: 547 --RPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RPV SD++VL+RS ++A + L IP L R +E++E ++L LLQ + Sbjct: 560 AMRPVTWSDMAVLLRSPARKAESYAKEFSRLGIP--LLVARGGFYESMEVTDLLSLLQLL 617 Query: 604 MTPERENTLRSALATSMMGLNALDIETL------------------NNDEHA-W---DVV 641 P ++ + L + ++G++ ++ T+ +++EHA W D Sbjct: 618 DNPLQDVPTLAVLHSPLVGMSLDELATIRLKLTKGPIWMALRRFHESDEEHAGWKKADRF 677 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 ++ F +R++ R+ + L A++S + A LL GE+R ++ + L Q+ Sbjct: 678 LKNFASWRRLARQVSLSRCLEAVLSETHYAAWLLTQHRGEQRHANVQRLLGLAQQFDRF- 736 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL-----PF 756 L R+L + I + + ++ +++ V ++++H+SKGLE+P+V + PF Sbjct: 737 -QRQGLFRFL-RFIDAQQAAETEPEVAAVAEEDAVSLMSVHQSKGLEFPVVVVADLGKPF 794 Query: 757 ITNFRVQEQAFYHDRHSF-EAVLDLNAAPESVDLA--------EAERLAEDLRLLYVALT 807 ++ + D+ V + L + E L E++RLLYVALT Sbjct: 795 -NMMDLRAEIMLDDKFGLCPQVKPPHTGQRYPSLPYWLARQRQKQEMLGEEMRLLYVALT 853 Query: 808 RS 809 R+ Sbjct: 854 RA 855 >UniRef50_D2RKU1 Exodeoxyribonuclease V n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKU1_ACIFE Length = 1116 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 98/410 (23%), Positives = 172/410 (41%), Gaps = 56/410 (13%) Query: 375 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET----ALLLIGDPKQAIYAFRGADIFTY 430 ++RF M+DEFQDT+ +Q R+ + + L ++GD KQ+IY FRGAD+ + Sbjct: 338 KSRFRYLMVDEFQDTNEEQKRLVYLLSGGSSRSLQGRNLFVVGDAKQSIYRFRGADVSVF 397 Query: 431 MKARSEVHA----HYTLDTNWRSAPGMVNSVNKLFSQ---TDDAFMFREIPFIPVKSAGK 483 + R + + +D N+RSAP ++ + N LF TD P P + + + Sbjct: 398 RQVRDAIGETGGDNIVMDDNFRSAPEIIEACNTLFDDLLGTDSRSDVTAQPLHPHQPSSR 457 Query: 484 NQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 + KGE C + + Q + A IR + Sbjct: 458 KPVFAVLKKGE--------------CTLEECQQAEGRYVAQAIRQ------------LRE 491 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 D P +++L+ + + Q +ALT L I S +S+ +E E + + LL + Sbjct: 492 DTGLPY--GQMAILLPAIHLSRQYEEALTALGIKS-QVSDGKGFYERQEVVDWISLLTFL 548 Query: 604 MTPERENTLRSALATSMMGLNALDI-------------ETLNND-EHAWDVVVEEFDGYR 649 + P ++ L L + G++ + E+L E + + + + Sbjct: 549 LNPRKDWALAGFLRSPYAGISDRQLTDLLKPWPELSLWESLRQSLEEPFVTLSRKLEALH 608 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVR 709 + + + ++ A A + LLA GG +L + + L + +E Sbjct: 609 RTALFQSLPELMDAFQEAFAVEPTLLAQRGGREKLANFRKLRALGVKGA--MEDGDTARD 666 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 +L + L +A E+D VQI+TIHKSKGLE+P V+LP ++ Sbjct: 667 FLDRLNLMRRLSARESAANQEADPEAVQIMTIHKSKGLEFPAVFLPDLSK 716 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 26/126 (20%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AG+GKT + +L++L R T +E+L +TFT A E+R R++ I Sbjct: 21 VSAGAGSGKTRVLVERFLKILQ--------ERKATAQEILAITFTRKAAREMRERVQKGI 72 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 + R+ E ++KA + L LA+R A + TI FC ++L N Sbjct: 73 LD-RLGAAAEP-------------EEKAYWQEQLQLADR----APITTIDSFCSQVLREN 114 Query: 141 AFESGM 146 E+G+ Sbjct: 115 PVEAGL 120 >UniRef50_B8KMM2 Putative UvrD/REP helicase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KMM2_9GAMM Length = 1055 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 213/885 (24%), Positives = 353/885 (39%), Gaps = 200/885 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 I A AG+GKT+++ +LL S A ++ TFT+ A EL+ R+RS Sbjct: 11 FISAGAGSGKTYSLTQKLEQLLSSQEVSPA--------GVIATTFTKLAAGELKERVRSK 62 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + E + Q L QM++A + T++G C +L Sbjct: 63 LIE---------------------------SGQ--LGVANQMEQALIGTVNGVCGDLLRR 93 Query: 140 NAFESGMLFEQQLIEDES---LLRYQACADFWRRHCYPLPREIAQVVFE----------T 186 AFE+ M +Q L+ DE+ LL YQA + PL R++ Sbjct: 94 FAFEAHMPPDQ-LVLDEAQGDLLFYQAIEHALATN-KPLIRKMNATCHRLQIIDRSRQLN 151 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ-IVARIDTVKQQWRDAVGELDA 245 W+ + D R A I+ L A ++A TV RD +L Sbjct: 152 WRAEVKSIADAARANNQSAQDIR-------YLGKASADGLLAHFPTVTD--RDLDRQLLN 202 Query: 246 LIESS--GIDRRKFNRSNQAKWIDKISA-----------WAEEETNSYQLPESLEKFSQR 292 IE + GID K++ I+ W E + S ++P + S+ Sbjct: 203 AIEQALDGIDTDTDGTKVTGKYVSLITGVRAALYNDRATWPEWLSLSKEMPGA---KSKP 259 Query: 293 FLEDRTKAGGETPRHP-LFEAID-------QLLAEPLSIRDLVITRALAEIRETVAREKR 344 + E + +HP L E I ++ A+ LS L+ K Sbjct: 260 YAEPIADIAIDYAKHPKLHEDIRFFAVSAFEIAADSLSAYQLL---------------KT 304 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 ++G + F D RL L + + ++ + M+DEFQDT P Q +F ++ Q Sbjct: 305 QKGLIDFVDQEQRLYQLLDHPT---VRETLKEELQLLMVDEFQDTSPIQLALFLKL--SQ 359 Query: 405 PETALLLIGDPKQAIYAFRGADIFTYMKA-----RSEVHAHYTLDTNWRSAPGMVNSVNK 459 ++ +GD KQ+IY FRG+D T M A E +A L+ +WRS P +V N Sbjct: 360 LAEQVIWVGDIKQSIYGFRGSDP-TLMAAVVKRVTDEGNAPEILENSWRSTPELVAYTNN 418 Query: 460 LFSQT-DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM 518 LF+ D+ ++ P + + + PA+ +W ++ + + Sbjct: 419 LFAPAFTDSLRPEQVTLKPARKSFTD-----------NPAVTLWRLQESN------KEKR 461 Query: 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRA--SDISVLVRSRQEAAQVRDALTLLEI 576 A+ A + L++ + +++ D P A SD+++L R+ V AL+ ++ Sbjct: 462 ARALAVGVTSLLES----KPTVIDKDSQLPRTANYSDVAILCRTHTNLDAVATALSEAKL 517 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD--------- 627 P Y R + T E L L+ ++ P +TL SA S+ + D Sbjct: 518 PIRY--KRPGLLATPEGCLALACLRRLIDP--LDTLASAEILSLSECESPDNWIAQRIAY 573 Query: 628 IETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM------LRALMSARNIAENLLATAGGE 681 +E + H W + +E + +R +P LR + A N+ +++ E Sbjct: 574 LEDTDQKPHQW-LEDDETGPIAALKAQRIRLPFLTPVETLRLAIDAGNVRQSVFRWGPTE 632 Query: 682 RR-------LTDIL-HISELLQEAGTQLESEHA--LVRWLSQHI-LEPDSNASSQQMRLE 730 +R L +L H E + + +Q + A LV WL Q E D+ A+ Sbjct: 633 QRSQHRLNNLAALLGHAEEYMNQCSSQNQPATAAGLVLWLYQLAQAEQDTQATG------ 686 Query: 731 SDKHLVQIVTIHKSKGLEYPLV-------------W----LPF---------ITNFRVQE 764 ++ +Q+VT H +KGLE+P V W LP + N ++ Sbjct: 687 GSENAIQLVTHHGAKGLEWPFVIAMDLDAKLKPRLWGLTVLPSPHAIDLDNPLANRTLRY 746 Query: 765 QAFYHDRHSFE-AVLDLNAAPESVDLAEAERLAEDLRLLYVALTR 808 + S + ++LD AA + +LA A+ L E RLLYV+LTR Sbjct: 747 WPTFAGLQSAKISLLDDIAASDEGELAMAQELQEAKRLLYVSLTR 791 >UniRef50_A8VW69 Phospholipase D/Transphosphatidylase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW69_9BACI Length = 1244 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 153/599 (25%), Positives = 259/599 (43%), Gaps = 92/599 (15%) Query: 283 PESLEKFSQRFLEDRTKAGGETPR-----HPLFEAIDQL--LAEPLSIRDLVITRALAEI 335 PE EK Q L D+ K + R + L +A++ L LAEP +R+L T + Sbjct: 301 PEIQEKIKQ--LRDKAKKTVDDSRSAYALNSLDDALNDLGALAEP--VRELAKT--IQRF 354 Query: 336 RETVAREKRRRGELGFDDM----LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 + A +KR +G + F D+ L L S+L+ GE +A F M DE+QDT+ Sbjct: 355 EKKYAIKKREKGVVDFSDLEHFALKILTSSLK---GEPIANQYSNYFQEVMTDEYQDTNR 411 Query: 392 QQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD--IF--TYMKARSEVHAH---YTLD 444 Q I ++ + + ++GD KQ+IY FR A+ IF Y + S+ L Sbjct: 412 VQEAILSQVSN---SSNRFMVGDIKQSIYRFRLAEPGIFLDKYRRYTSDGSGEGMVIDLS 468 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS-AGKNQALRFVFKGETQPAMKMWL 503 N+RS ++++VN +F QT D + EI + S N VF P + + L Sbjct: 469 MNFRSRDEILSAVNYVFRQTMDERV-GEIRYDDAASLVTGNHRFPEVFS----PLVHVQL 523 Query: 504 M---EGES------CGVGDYQSTMAQVCAAQ------IRDWLQAGQRGEALLMNGDDARP 548 + E ES D + AAQ I + + RP Sbjct: 524 VNVAENESETEPHQTPDSDSDEKEQDLSAAQAEARSMIASIKSMTESSSVFDPSTGHERP 583 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 V DI +LVRS A + IP +Y + F +E Q M+ LL+ + P++ Sbjct: 584 VSYRDIVILVRSMTWADTFMEEFKAAGIP-MYADLSNGYFTAIEVQIMIALLKIIDNPKQ 642 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWD--------------------VVVEEF--- 645 + L S L + ++GL+A ++ + D + D + V+ F Sbjct: 643 DVPLASVLRSPIVGLSADEMAEIRIDLPSSDFFSAIHHYADQDQVENESLQIKVKSFLTK 702 Query: 646 -DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE 704 D +R R + ++ L + GG++R ++ + + + + S Sbjct: 703 LDEWRSSARSTALSSLIWKLYRDTGYYDYAGGMPGGKQRQANLKALYD--RAKAYEKTSF 760 Query: 705 HALVRWLS-QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI----TN 759 L R+LS ++ + + + + +V+++TIHKSKGLE+P+V++P I Sbjct: 761 RGLYRFLSFIAKMQERGDDLGEARAIGEQEDVVRLMTIHKSKGLEFPIVFIPGINREFNQ 820 Query: 760 FRVQEQAFYHDRHSFEA--------VLDLNAAPESV-DLAEAERLAEDLRLLYVALTRS 809 +++ H +H F VL + E + +++ E LAE++R+LYVA+TR+ Sbjct: 821 MDLRKSYLMHQKHGFGTQWFDPELRVLYPSVQHELMKEISRREMLAEEMRVLYVAMTRA 879 >UniRef50_C5C3C8 UvrD/REP helicase n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C3C8_BEUC1 Length = 1110 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 131/522 (25%), Positives = 225/522 (43%), Gaps = 74/522 (14%) Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 AR + G L F D+L LR+ E + ++++ +P ++DEFQDTDP Q + R Sbjct: 321 ARARAAEGALEFHDLLVLARDLLRTR--EDVRSSLQAAYPRLLLDEFQDTDPIQVELAVR 378 Query: 400 I----------WH--HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNW 447 I WH P +L ++GDPKQ+IY FR ADI T++ R+ + +L TN+ Sbjct: 379 IAAGAEGGAGDWHDVRVPPGSLFVVGDPKQSIYRFRRADIRTFLDVRTWLGDVCSLTTNF 438 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS----AGKNQALRFVFKGETQ--PAMKM 501 RSA ++ VN F + + + P+ + G A+ + Q P Sbjct: 439 RSAAPVLAWVNATFGELIQPVDGAQPAYEPLDAVRPPVGVGPAVTVLGAQPHQDLPRASA 498 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 L+ + A V A +R AGQ G + R +R D++VLV +R Sbjct: 499 ALLR---------EREAADVAAVLLR---AAGQGWTVHDPRGGEERELRWGDVAVLVPAR 546 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDS-VFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 + +AL IP Y + S V+ E + ++ +A+ P + ++ +AL + + Sbjct: 547 TSLPFLVEALDAAGIP--YRAESSSLVYSATEVRALMAAARAIADPGDQFSVVTALRSQV 604 Query: 621 MGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNI--------AE 672 G D+ + D ++ ++ + R P+ + L R + Sbjct: 605 YGCGDDDLWSWKRDGGSFHLLAPADE-------DRADHPVAQGLAHLRTVHRWARWATPS 657 Query: 673 NLLATAGGERRLTDI-----LHISE-------LLQEAGTQLESEHALVR----WLSQHIL 716 +LA +RR+ ++ H + +L +A E H +R W ++ Sbjct: 658 EVLARVAADRRMFEVPADAPAHARDVWRRLRFVLDQARAWSEVSHGGLRAYLAWAARQAD 717 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEA 776 E S+ ++ + E+D V+I+TIH +KGLE+PLV L +T+ + + Sbjct: 718 E--SSRVAEAILPETDVDAVRIMTIHAAKGLEFPLVVLSGLTSQQRRASGVRLLWTDDGY 775 Query: 777 VLDLNAAPESVDLAEAERLAEDL------RLLYVALTRSVWH 812 + L + ++ D A L E + RLLYV TR+ H Sbjct: 776 AVRLRQSVQTNDFTAAAPLDEQMDDHERRRLLYVGATRARDH 817 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 30/132 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 +EA AG+GKT ++ L++ G + + ++ +TFTE A AELR R+R Sbjct: 21 FVEAGAGSGKTRSLVERVGTLVMDDG--------VPLAQIAAITFTEKAGAELRDRLRGE 72 Query: 80 IHEL-RIACLRETTDNP----LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 + R A ++P L ER LE+ +D AA+ T+H F Q Sbjct: 73 FERVWRRARPGGPQEDPARSSLAERALED-----------------LDGAAIGTLHSFAQ 115 Query: 135 RMLNLNAFESGM 146 R+L + E+G+ Sbjct: 116 RILARHPVEAGL 127 >UniRef50_C8S137 Double-strand break repair helicase AddA n=1 Tax=Rhodobacter sp. SW2 RepID=C8S137_9RHOB Length = 1090 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 142/531 (26%), Positives = 231/531 (43%), Gaps = 81/531 (15%) Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA----MIDEFQDTDPQQYR 395 A K RG L FDD+++R + L S +A + R ++DE QDT P+Q+ Sbjct: 347 AARKLARGALDFDDLIARAKALLTDPS---VAQWVLFRLDGGIDHILVDEAQDTSPEQWD 403 Query: 396 IFR---------RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT---- 442 + R R P T + ++GD KQ+IY+F+GAD+ + +S A+ Sbjct: 404 VIRLLAQEFTAGRGARDVPRT-IFVVGDKKQSIYSFQGADVGAFEAMQSLFRANLAQVNT 462 Query: 443 ------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA-LRFVFKGET 495 L+ ++RS+P ++ V+ F T A + ++ I KSA Q L + Sbjct: 463 PLQGLELEYSFRSSPLILRLVDLTFDATTHADVGGKVNHIAFKSAMPGQVELWPALEPSG 522 Query: 496 QPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 +P W + + + + AA+I++ + AG + + ++G + RPV A D Sbjct: 523 KPEDGDWFDPVDLISDEHVAARLGRQVAARIKNMIDAGVQ---IPVDGGE-RPVHAGDFL 578 Query: 556 VLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 VLVR R A++ A +P + ++R + + +++ LL + TPE + L Sbjct: 579 VLVRRRSAVFAEIIRACKAAGLP-IAGADRLKLGGEMAVKDLASLLAFLATPEDDLALAE 637 Query: 615 ALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR-QIWRKRGVMPMLRALMSARNIA-- 671 L + ++G + TL GY Q R+ L L R+ A Sbjct: 638 VLRSPLLGWTEGQLYTLAQGRT----------GYLWQALRQADAPETLAILHDLRDQADF 687 Query: 672 -------ENLLATAGGERRLTDIL------HISELLQEA----GTQLESEHALVRWLSQH 714 E L G R L L I ELL +A + S + WL Sbjct: 688 LRPFDLIERALTRHDGRRLLLARLGPEAEDGIDELLSQALAYERNDVPSLTGFLSWLQTD 747 Query: 715 ILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSF 774 +E A S R ++++T+H +KGLE P+V LP + +++A + R + Sbjct: 748 DVEVKRQADSAGRR-------IRVMTVHGAKGLEAPIVILPDTADHAPRDRAELY-RLAD 799 Query: 775 EAVLDLNAAPESV----DLAEAERL---AEDLRLLYVALTRSVWHCSLGVA 818 +++ AA +S + EA RL AE LRLLYVA+TR+ C L VA Sbjct: 800 GSMIWKTAAEDSPAPTREAREARRLAAEAESLRLLYVAMTRA--QCWLMVA 848 >UniRef50_C0Z545 ATP-dependent nuclease subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z545_BREBN Length = 1275 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 156/622 (25%), Positives = 263/622 (42%), Gaps = 145/622 (23%) Query: 306 RHPLFEAIDQLLAEPLS--IRDL--------VITRALAEIRETVAREKRRRGELGFDDML 355 + L E I+Q + P + DL + R + + EKR RG + F D L Sbjct: 313 KKELAEQIEQYFSTPAEQYVADLQRIAPHMQTLARLVTAFSDAYQLEKRLRGLVDFGD-L 371 Query: 356 SRLDSALR-----SESGEVLAAAI----RTRFPVAMIDEFQDTDPQQYRIFRRI----WH 402 L ALR +ESG+ + ++I R +F ++DE+QD + Q I + + + Sbjct: 372 EHL--ALRVLTETNESGKTVPSSISTQLREQFAEVLVDEYQDINLVQETILQMVSRDGAN 429 Query: 403 HQPETALLLIGDPKQAIYAFRGAD-------IFTYMKA----RSEVHAHYTLDTNWRSAP 451 QP + +GD KQ+IY FR A+ TY K + + L N+RS Sbjct: 430 GQPANRFM-VGDVKQSIYRFRLAEPKLFLEKYVTYQKDGDADEACIGRRIDLAANFRSRR 488 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG---ETQP---AMKMWLM- 504 +V++VN F+FR+I V G + + + + E QP +M L+ Sbjct: 489 EVVDAVN---------FLFRQIMSHGVGEIGYDPSAELINRASYPEAQPNRLQAEMHLID 539 Query: 505 ------------------EGESCGVGDYQSTM--------AQVCAAQIRDWLQAGQRGEA 538 EGE+ G+ D +S A++ A++IR W++ G+ E Sbjct: 540 RNTVIADEGQAVVAEATDEGEA-GIPDGESAEEASVAQLEARLIASRIRRWMEPGEGEEP 598 Query: 539 LLMNGDDA---RPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQ 594 LL+ A RP+ DI +L+R+ Q +++ L IP VY F E + Sbjct: 599 LLVFDKKAGGMRPLAYRDIVILLRATSGWGQTMQEELHAAGIP-VYAEQTAGYFAATEVE 657 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-------------------NDE 635 ML LL+ + P ++ L + L + ++GL + + + Sbjct: 658 TMLSLLRVIDNPLQDIPLAAVLRSPIVGLREQQLAQIRIHYATGPFHQAVLQYAEERPPQ 717 Query: 636 HAWDVVVEEFDGYRQIWR---KRGVMP-MLRALMSARNIAENLLATAGGERRLTDI--LH 689 +W+ + +F G +WR +RG + +L L + + A G++R ++ L+ Sbjct: 718 ESWEKRLRQFFGRLGLWRTEARRGALSELLTMLYRETGYLDYVAALENGQQRQANLRALY 777 Query: 690 ISELLQEAGTQLESEHALVRWLS-QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 EAG S L R+L L+ N + + ++ +V+I+TIHKSKGLE Sbjct: 778 DRARQYEAG----SYRGLFRFLRFVDRLQEAGNDMGEARTIGENEDVVRIMTIHKSKGLE 833 Query: 749 YPLVWLPFI----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAER---------- 794 +P+V++ + ++ Q H DL P +V+ + R Sbjct: 834 FPVVFVAGMGKQFNTMDLKSQFLLHK--------DLGFGPMAVEPSMQLRYPSLAALGIR 885 Query: 795 -------LAEDLRLLYVALTRS 809 LAE++R+LYVALTR+ Sbjct: 886 QKLRRDMLAEEMRVLYVALTRA 907 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 40/161 (24%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + +R ++ P+ V+ LLVVTFT AA AE+R RI Sbjct: 29 LVAAAAGSGKTSVLVERIIRRIMDEKD------PVGVDRLLVVTFTNAAAAEMRHRIGD- 81 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 A + D+P L + L L +R A + T+H FC +L Sbjct: 82 ------ALRKALKDDPHSSHLRRQ----------LALLQR----ATITTLHSFCLGILRQ 121 Query: 140 NAF-------------ESGMLFEQQLIEDESLLRYQACADF 167 + G L Q ++E++ Y+ ADF Sbjct: 122 YYYLIELDPDFRIADQMEGELLRQDVLEEQLESWYENDADF 162 >UniRef50_Q2FNI4 UvrD/REP helicase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FNI4_METHJ Length = 1149 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 129/543 (23%), Positives = 222/543 (40%), Gaps = 90/543 (16%) Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 KR+ + F+D++ L+S +++A IR R+ ++DEFQDTDP Q+ I I Sbjct: 344 KRQANGVDFNDLIQLTREFLQSHQ-DIVARHIRPRYQYILVDEFQDTDPAQFEIITAIIG 402 Query: 403 H-QPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLDTNWRSAPGMVN 455 QP T +L ++GDPKQ+IY FR AD+ + +A++ + + LDT++RS ++ Sbjct: 403 ELQPGTRSLFIVGDPKQSIYLFRNADVTRFKEAQTRILSDCKGNLINLDTSFRSCREVIG 462 Query: 456 SVNKLFSQTDDAFMFREIP----FIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 VN LFS+ F E P + P++ +A P L+ G++ Sbjct: 463 CVNYLFSRI---FASTEKPWEFGYEPIQVCDDRKA---------SPGSITVLLPGKAPK- 509 Query: 512 GDYQSTMAQVCAAQIRDWL-QAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRD 569 G +S ++ A + D + Q G + + D RP DI++L+ R + Sbjct: 510 GSERSETKEIEAGMVADLVHQIVSCGSFQITDRDGVMRPAGYGDIAILIERRTHLTRYTT 569 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL-NALDI 628 AL+ E P Y+ + E ++ +L ++ P L L + + L Sbjct: 570 ALSRKETP-FYVHGGIGFYSRQEIYDIYNILSFLLRPYDSAALFGVLRSPYFSFSDPLIY 628 Query: 629 ETLN--NDEHAWDV------VVEEF-------------------------------DGYR 649 LN + W + E F + +R Sbjct: 629 HILNVPGAKRRWSLYEKLRACAERFCTRPSEIEPSAEILSCSPADQELILRAARLLESWR 688 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERR---LTDILHISELLQEAGTQLESEHA 706 + + V+P++ ++ I A GE++ LT +L I E G ++ Sbjct: 689 NLAGREPVVPLVNRIIRESGILTIYGALEQGEQQAANLTKLLGIIRGRTEGGY-----YS 743 Query: 707 LVRWLSQHILEPDSNASSQQMRLES-DKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 L + ++ + L++ K V I+T+H +KGLE+P+V LP + + R + Sbjct: 744 LFDLVQDMMISIADEEREGEAALDTLSKTSVNIMTVHAAKGLEFPVVILPDMGSSREGKL 803 Query: 766 A--FYHDRHSFEAV--------LDLNAAP--ESVDLAEAER-LAEDLRLLYVALTRSVWH 812 D V D+ P ++ L + E+ AE RL YV TR+ H Sbjct: 804 GPILSGDHPHLYGVRIPDPDQDFDIKETPVYTALSLIQKEKESAERKRLFYVGATRARDH 863 Query: 813 CSL 815 L Sbjct: 864 LVL 866 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 29/127 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 ++ A AGTGKTF + YL L+ G + ++L +TFT+ A AE++ R+R Sbjct: 19 VVTAGAGTGKTFVLVEKYLNLVQDQG--------YRIRDVLALTFTDKAAAEMKERVRKT 70 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I E L++ DN +++ EE L++ A V T H FC ++L Sbjct: 71 IAER----LKDDPDNQVWKDAHEE----------LVI-------APVMTFHSFCAQILRE 109 Query: 140 NAFESGM 146 A E+G+ Sbjct: 110 FAIEAGL 116 >UniRef50_A6WGC8 UvrD/REP helicase n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WGC8_KINRD Length = 1123 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 148/597 (24%), Positives = 234/597 (39%), Gaps = 91/597 (15%) Query: 271 AWAEEETNSYQLPESLEKFSQRFLED-RTKAGGETPRHPLFEAIDQLLAEPLSIRDLVIT 329 AW + + ++ ++L +QR +ED R+ G T + D LLAE Sbjct: 273 AWQQAGLDKAEVVDAL-AHAQRAVEDLRSAVGAATTKTLTARVQDWLLAE---------- 321 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 A +R G L F D+L LR + + ++PV +IDEFQDT Sbjct: 322 ----------ADRRRELGALSFHDLLVLARDLLRRNRD--VRERLHAQWPVLLIDEFQDT 369 Query: 390 DPQQYRIFRRI-----------WHHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSE 436 DP Q I + W P L +GD KQ+IY FRGAD+ T+ A + Sbjct: 370 DPLQVEIACLLAGDCGEEPPEQWQEIPVAPGRLFFVGDAKQSIYRFRGADVATFT-AVGD 428 Query: 437 VH--AHYTLDTNWRSAPGMVNSVNKLFSQ---TDDAFMFREIPFIPVKSAGKN--QALRF 489 +H L N+RS PG++ + N F D A P + G + Sbjct: 429 LHERGRTGLAVNFRSVPGVLEAANHAFRTLIGADPAAGIAYADLHPARDGGADGVDVPVL 488 Query: 490 VFKGETQ-PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP 548 + G+ PA + +E E V D + A+ W + RP Sbjct: 489 LLGGDRDVPAGALRDLEAEH--VADV------IARAKAEGWPVEASTRHPDGTSTRGQRP 540 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 + D++VL+ +R A + AL +IP + +R V+ T + +L LLQAV +P Sbjct: 541 AQYRDVTVLLPTRTPLASIERALEGRDIP-YRVESRSLVWSTDAVRAVLALLQAVDSPAD 599 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRAL---- 664 + L +AL + + +D+ W + +G I + V LR L Sbjct: 600 QVALLAALRQPGLACSDVDLVGWRAAGGRWSIHAAVPEG---IDEQHPVAAALRTLRRWH 656 Query: 665 -----MSARNIAEN------LLATAGGERRLTD--------ILHISELLQEAGTQLESEH 705 + + E L+ +RR D + E G+ L Sbjct: 657 EQRWWVPVNQLVEEVVRELRLVELTASQRRPRDHWRRLRFVVDQAREWCDRGGSGLTG-- 714 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 + W + + DS + + E D V+I+T+H SKGLE+P+ + + + Sbjct: 715 -FLSWTVRQ--QQDSADLVETVVPEPDDDAVRILTVHGSKGLEFPVTVVAGLNGSGRDDA 771 Query: 766 AFYHDRHS----FEA-VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 F A VL++ ++ +AE E +RLLYVALTR+ H +G Sbjct: 772 TVLWAPDGPLVRFRADVLEMPGWRQASQDEKAESEQEAIRLLYVALTRAQDHLVVGC 828 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 20/127 (15%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 +EA AGTGKT + A + ++ A V EL +TFTE A +ELR RIR Sbjct: 23 FVEAGAGTGKTTALVARVVHMV-------ATGHLQHVGELAAITFTENAASELRSRIREG 75 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + R TT P Q A +D+AA+ T+HG R+L Sbjct: 76 LEDAARGEHRGTTYEP-------------QERDCCRTAAAALDDAAIGTLHGTAIRILQE 122 Query: 140 NAFESGM 146 E+G+ Sbjct: 123 APLEAGL 129 >UniRef50_D0BK91 ATP-dependent nuclease subunit A n=2 Tax=Granulicatella RepID=D0BK91_9LACT Length = 1244 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 212/934 (22%), Positives = 367/934 (39%), Gaps = 216/934 (23%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT L R++ + ++ LL+VTFTEAA E++ R+R+N Sbjct: 27 LVSASAGSGKT---KVLVDRIM------GYIEDGVNIDSLLIVTFTEAAAKEMKERLRTN 77 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN- 138 + + A +ET +I K + L L + A + TIH FC +++ Sbjct: 78 LEK---AITKET-----------DITKKHMYIKQLSL----LPNATISTIHSFCMKVIRR 119 Query: 139 -------------LNAFESGMLFEQ-------QLIEDES----LLRYQAC---------- 164 LN E +L E+ +L+E+ S L+RY + Sbjct: 120 YFYLSQLDPVFSLLNEVEGTLLKEKVWRNIQDELLEEHSWMDGLMRYFSSDRNDDGFTTL 179 Query: 165 ----ADFWRRHCYPLPREIAQVVFETWKGPQALLRDI-NRYLQGEAPVIKAPPPDDETLA 219 DF R P P++ W A L + + Y GE P+IK Sbjct: 180 VYQLYDFSRSK--PNPKQ--------WISSLADLYETKDEY--GEIPIIKD--------- 218 Query: 220 SRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKI-SAWAE-EET 277 Q I + A EL L E +G ++ K A+ I ++ +A+A T Sbjct: 219 ----QFAPYIVEELKYLVSAYDELIKLAEVTGFEKCKDVVEADAQKIQEVYTAFASGNYT 274 Query: 278 NSYQLPE--SLEKFSQRFLEDRTKAGGETPRHPLFEAI------------DQLLAEPL-- 321 +Y L + S ++F +D T T R + +AI DQ+LA Sbjct: 275 AAYTLAQGVSFDRFPTVPKKDET-----TDREAV-QAIKRKRDSLKKHWEDQVLATAFFE 328 Query: 322 -------SIRDLV-----ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV 369 +R++ +++ + + E EK+ ++ F D+ S L +E V Sbjct: 329 SPEVQMKHLRNIYPMMLHLSQVVLKFYEAFQLEKKTSNKIDFSDLEHDTLSILSTEKNGV 388 Query: 370 LAAA--IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADI 427 L A + F +IDE+QD + Q I + E L ++GD KQ+IYAFR AD Sbjct: 389 LIAKKYYKELFTEVLIDEYQDVNRVQEAILTSVAR---ENNLFMVGDVKQSIYAFRLADP 445 Query: 428 FTYMKARSEVHA------HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA 481 + + + E +A L N+RS +++ N +F Q D E+ I + Sbjct: 446 -SLFRDKYEAYADENGGKRIILAENFRSRDQVLSFTNLIFRQIMD----HELGQIDYDDS 500 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCG--------------VGDYQSTMAQVCAAQIR 527 + + +T + ++++ + + S A +I+ Sbjct: 501 AALKTGNLNYSDDTDKFSECYIIQNANLEEEEEESSGLESESPIDSSASAEVHFIAGKIK 560 Query: 528 DWLQAGQ---RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 + L A Q E RP++ DI +L ++ + + T +IP + N Sbjct: 561 E-LMANQFEIMHEESTKENPKKRPIQYKDIVILAPTKANNGLIEEIFTQYQIPVLVQKNL 619 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL--NND-------- 634 F+ E M+ L+ + P ++ S L + ++GL+ + + + NN Sbjct: 620 -QYFKRTEIAIMMSALKIIDNPTQDIPFVSVLRSGIVGLDEIALAHIRKNNKSCSFYEAC 678 Query: 635 ----EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE---------------NLL 675 EH V +D +Q K + L L S R+IA N L Sbjct: 679 VHFVEHFTLEEVNYYDSSQQQQLKERIKSFLDQLESWRDIANHQSISTLIWQIYMDTNYL 738 Query: 676 ATAGGERRLTD-ILHISELLQEAG----TQLESEHALVRWLSQHILEPDSNASSQQMRLE 730 G+ +L++ L + A + + VR++ Q ++ + ++ Sbjct: 739 TYVHGQSVGQQRVLNLHALYKYAKDFEDSSFKGLRNFVRFIQQ--MQHKKQDLEEPTQIS 796 Query: 731 SDKHLVQIVTIHKSKGLEYPLVWL----PFITNFRVQEQAFYHDRHSFEAVLDLNAAPES 786 ++ V+++TIH SKGLEYP+V+L +++QA D + PE Sbjct: 797 DEEDAVRVMTIHASKGLEYPVVFLMNAGKKFNQQDIRQQAIRSDE--LGVGVKYLQLPER 854 Query: 787 VDLA--------EAER---LAEDLRLLYVALTRS 809 + +AE+ L+E++R LYVA+TR+ Sbjct: 855 IQWTTIPYVMAYKAEKNKLLSEEMRKLYVAMTRA 888 >UniRef50_C7HA04 ATP-dependent exoDNAse beta subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA04_9FIRM Length = 1233 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 136/561 (24%), Positives = 227/561 (40%), Gaps = 113/561 (20%) Query: 330 RAL-AEIRETVAR---EKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMI 383 RAL A +R+ AR +KR R L F D + LR + G L IR + M+ Sbjct: 364 RALFAAVRDFDARFSAKKRDRKLLEFSDFEHQALHLLRDQDGPPTALCGVIRQNYAAVMV 423 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY------------- 430 DE+QDT+ Q ++R + + L L+GD KQ+IY FR AD + Sbjct: 424 DEYQDTNALQDALYRCLASPAGDD-LFLVGDLKQSIYRFRQADPSIFREKLDSWPALPGG 482 Query: 431 ------MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 484 + A LD N+RSAP +V +N LF + P + + G Sbjct: 483 AARPRPAEGTPGTDAMLALDANFRSAPQVVEGINFLFERLMS-------PELGDTAYGDG 535 Query: 485 QALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD 544 Q L GE +++ + D T A A +I + +Q+G+ + +G Sbjct: 536 QRLICGAPGEYTGSVEAHFLP------DDTAETDAGWIARRIEELVQSGEP----VRDGS 585 Query: 545 DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 RPV+ D +L+ +R + +ALT IP VY R+++ + + ++ LL+ + Sbjct: 586 ATRPVQYEDCCILLAARIDFPAYVEALTARGIP-VYADARENLLDAPHIRPLIALLKVID 644 Query: 605 TPERENTLRSALATSMMGLNALDIETL---------NNDEHAWDVVV------------- 642 P ++ L +A+ + G D+ L E+A + Sbjct: 645 NPAQDIYLAAAMLGPLFGFTDDDLVRLRARAEEIQKQQGENAPQRISLYGALLLTVNSGE 704 Query: 643 -EEFDG-YRQIWRKRGVMPMLRALMSARNIAENLLATAG----------GERRLTDILHI 690 F G R + + + + + A + E + A+ G G RR D Sbjct: 705 DTPFTGKVRAFYARLTELRRMARSVPAEQLLEEIFASTGYLAALGVMENGARRREDARRF 764 Query: 691 SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 + AG+ S ALVR + L + + S V ++TIH+SKGL++P Sbjct: 765 ASFCAGAGSGGIS--ALVRAIDAAALA--GSTGQDTVPGGSRPGCVTVMTIHRSKGLQFP 820 Query: 751 LVWL--------------PFITN--------FRVQEQAFYHDRHSFEAVLDLNAAPESVD 788 +V++ P + + R +E + ++ A+ +++A Sbjct: 821 VVFVADTARRFNAADTRQPVLLHRMYGAGLRLRPEEGEGAYKTAAYTALSNVHA------ 874 Query: 789 LAEAERLAEDLRLLYVALTRS 809 AE +E +RLLYVALTR+ Sbjct: 875 ---AEMRSEQMRLLYVALTRA 892 >UniRef50_Q88U41 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus plantarum RepID=ADDA_LACPL Length = 1249 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 130/554 (23%), Positives = 229/554 (41%), Gaps = 97/554 (17%) Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRS--ESGEVLAAAIRTRFPVAMIDEFQD 388 A + + A EKRRR L F D+ L S ES + A +R +F M+DE+QD Sbjct: 356 ATKQFKTAFAAEKRRRHVLDFSDLEHLTLQILTSDNESSQAALAQLRAQFEEVMVDEYQD 415 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YT 442 + Q I + + QP + ++GD KQ+IY FR AD ++ + + Sbjct: 416 INSLQESILQLLARDQPGN-MFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEHGERIV 474 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA---- 498 L N+RS + + N +FSQ DA PV ++A + + PA Sbjct: 475 LAENFRSVANVDHLTNLIFSQLMDA---------PVGQIDYDEAAYLKYGPKDYPADMPQ 525 Query: 499 -MKMWLMEGESCGVGDYQST------------MAQVCAAQIRDWLQAGQRGEALLMNGDD 545 + L + E+ + ST + AQ L+A + NG + Sbjct: 526 TTNLLLYQTETDKSTEDVSTDETNFSIDDPAVGSITMVAQKILALKAQDKPIYERANG-E 584 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 RP R SD+++LV +R + D IP V +++ + F+T E + M+ LL + Sbjct: 585 YRPFRYSDVALLVPTRNHNLTIIDVFKRYHIP-VVVNDAQNYFQTTEIRIMMALLSIIDN 643 Query: 606 PERENTLRSALATSMMGL--NALDIETLNNDEHAWDVVVEEF------------------ 645 P ++ L + L + ++GL N L + N + V++F Sbjct: 644 PYQDIPLVAVLRSPIVGLDENQLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYA 703 Query: 646 ---------DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI--LHISELL 694 +R + R+ ++ ++ + + + G++R ++ L+ Sbjct: 704 KIETFLTQLTEFRDLARRNQIVTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYT 763 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 E G+ + VR++ + + E D + ++ E+D V ++TIH SKGLEYP++ Sbjct: 764 YEQGS-FKGLFQFVRFI-RRMQEKDQDLAAAVA--ETDAEAVNVMTIHGSKGLEYPVI-- 817 Query: 755 PFITNFRVQEQAFYHDRHSFEAVLDLNAA-----------------PESV--DLAEAERL 795 F+ + ++ F A+LD A P+ V + + Sbjct: 818 -FVMDM---DKQFNQTDTRSSALLDREAGIGITYLDPETRVKYPTLPQVVTKQVVSKKMR 873 Query: 796 AEDLRLLYVALTRS 809 AE++R LYVA+TR+ Sbjct: 874 AEEMRKLYVAMTRA 887 >UniRef50_Q5WEU2 ATP-dependent exoDNAse beta subunit n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WEU2_BACSK Length = 863 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 131/503 (26%), Positives = 222/503 (44%), Gaps = 77/503 (15%) Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFT 429 +AAA ++ + M+DEFQDT+ Q +I + I P L +GD KQ+IY FRGAD+ Sbjct: 359 VAAACQSAYTHIMVDEFQDTNQVQLQIVQAI---NP-AHLFFVGDEKQSIYRFRGADVAI 414 Query: 430 ---YMKARSEVHAH--YTLDTNWRSAPGMVNSVNKLFSQT-----DDAFMFREIPFIPVK 479 K +E++ L N+R+AP +V VN+LF+ +DA + ++P+K Sbjct: 415 MNEMAKKAAEINEGELIHLQENYRTAPQIVELVNELFAHVMAPGGEDALPY-ATSYVPLK 473 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 + K + A+ + +S + S + Q A + + G+ Sbjct: 474 AGRKPHT--------NKQALAAFHQLEKSNEARSFASLLQQTIADGMIEVEGEGK----- 520 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 R + +D++VL+ SR ++ A IP + FE E + L + Sbjct: 521 ------VRQAQWNDVAVLLPSRTNLPELEQAFAEAGIP-YRVHGGVGFFEKQEVIDFLNV 573 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNN--DEH---AWDVVVEE----FDGY-- 648 L + P + + + L + + GL D+ T+N+ +EH A + EE F + Sbjct: 574 LNWLRRPFEDAYVVALLRSPLFGLTLSDLLTVNDCKEEHENLAVFLAKEEAPSLFANHPR 633 Query: 649 -RQIWRKRG--------------VMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 +Q ++ G V L L + +L+ G +R+ ++ + +L Sbjct: 634 LQQALKQYGEWIDLFLPFAFTGSVKEGLLQLFELTGLRYAVLSDTNGIQRVGNVEKLIDL 693 Query: 694 L-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 Q T LE+ L ++++I + ++ +LE + V I+T+H SKGLE+P+V Sbjct: 694 FAQLNTTNLET---LCLQMNRYIAASKNVPEAEVEQLEGEA--VTIMTVHASKGLEFPVV 748 Query: 753 WLPFITNFRVQE-QAFYHDRH---SFEAVLDLN---AAPESVDLAE---AERLAEDLRLL 802 LP++ R + A Y D+ F+ LD + P E + L E RL Sbjct: 749 CLPYMDQKRRPDTDAVYFDQEWDIVFQLKLDDRDPISTPAYFQAQEKRGKQALEEAKRLF 808 Query: 803 YVALTRSVWHCSLGVAPLVRRRG 825 YVALTR+ +C L A L RR Sbjct: 809 YVALTRAKDYCLLAAADLSERRS 831 >UniRef50_A0AL18 ATP-dependent helicase/nuclease subunit A n=3 Tax=Listeria RepID=ADDA_LISW6 Length = 1235 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 125/524 (23%), Positives = 231/524 (44%), Gaps = 68/524 (12%) Query: 342 EKRRRGELGFDDMLS-RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 EK+RRG L F+D+ L L+++ +A + + +F +IDE+QDT+ Q I + Sbjct: 365 EKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKEVLIDEYQDTNMVQETILLLV 424 Query: 401 WHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-------YTLDTNWRSAPG 452 + + L ++GD KQ+IY FR A+ +M E + L N+RS Sbjct: 425 TNSEESKGNLFMVGDVKQSIYRFRLAEPTLFMTKYQEYQQNGEGEGIRIDLSQNFRSRKE 484 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES---- 508 ++++ N +F Q M + + I A + L F A ++ L++ +S Sbjct: 485 VLDATNFIFHQ----LMDKHVAEIDYDEAAE-LTLGANFPKSNHMATELLLIDMKSNENE 539 Query: 509 ----CGVGDYQSTM--AQVCAAQIRDWLQAG--QRGEALLMNGDDARPVRASDISVLVRS 560 + Q A+ A +IR+ + + L N R ++ DI +L R+ Sbjct: 540 SEDELSPQELQKNQVEARAIATKIREMIDNKFPIYDKKLQQN----RSIQYRDIVILSRA 595 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 A + +A+ + +IP Y SN FET E M+ LL+ + P ++ L + L + + Sbjct: 596 MTSAPDMEEAMKVQDIP-FYASNNSGYFETTEVATMIALLKVIDNPYQDIPLAAVLRSPI 654 Query: 621 MGLNALD---IETLNNDEHAWDVV--------------VEEFDGYRQIWRKRGVMPMLRA 663 +GLN + I + +D + + +F WR+ + L A Sbjct: 655 VGLNEEELGQIRMAKKKGYFFDALLAYKDITVSAAADRISDFITQLNNWRELSIRENLTA 714 Query: 664 LM----SARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEP 718 L+ N E + GG++R ++ + + Q T VR++ + + Sbjct: 715 LIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTAFRGLFRFVRFVERLEVRG 774 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFR-VQEQAFYHDRHSF 774 D +++ + + D +V+++TIH SKGLE+P+V + ++ N R + + + F Sbjct: 775 DDLGTAKTLGEKED--VVRMMTIHASKGLEFPVVIISGLSKKFNMRDIYSKTLLDKDYGF 832 Query: 775 EA----VLDLNAAPESVDLA-----EAERLAEDLRLLYVALTRS 809 + + + P + A E +AE++R+LYVALTR+ Sbjct: 833 ASNYRDIEKMIVYPTIMQQAIKQKKSREMIAEEMRVLYVALTRA 876 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 29/143 (20%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + + L+ G+ L V+ELL+VTFT A+ AE++ RI + Sbjct: 30 LVAAAAGSGKTAVLVTRIIEKLVDETGN------LNVDELLIVTFTNASAAEMKYRIGKS 83 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + E + NP L K Q A ++ A++ T+H FC ++ Sbjct: 84 LEE-------ALSQNPDSSHL------KKQVA--------LLNYASISTLHSFCLEIIRK 122 Query: 140 NAFESGMLFEQQLIE--DESLLR 160 + FE+ + +LIE + S++R Sbjct: 123 HYFEADIDPNFRLIEPIESSMIR 145 >UniRef50_Q16CX8 ATP-dependent DNA nuclease, putative n=31 Tax=Proteobacteria RepID=Q16CX8_ROSDO Length = 1125 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 210/888 (23%), Positives = 366/888 (41%), Gaps = 161/888 (18%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A+AG+GKT + RLLL + E +L +T+T+AA +E++ R+ + Sbjct: 23 LAANAGSGKTRVLTDRVARLLLD---------KVAPEHILCLTYTKAAASEMQNRLFKRL 73 Query: 81 HELRIACLRETTDNPLYERL----LEEIDDKAQAAQWLLLAERQMDEAA---VFTIHGFC 133 E + D+ L E L +E D + + L R ++ + TIH FC Sbjct: 74 GEWAM-----LQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQTIHSFC 128 Query: 134 QRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA- 192 +L E+ + + IE+ + AD R A+++ +GP A Sbjct: 129 ASLLRRFPLEARVSPQFTEIEERA-------ADLLR----------AEIIDTMAEGPDAA 171 Query: 193 LLRDINRYLQGEAPV------------IKAPPPDDETLA--SRHAQIVARIDTVKQQWRD 238 ++ D+ ++ GE V + P +E+LA + A + A+ + D Sbjct: 172 VIADLAQHYTGENFVKLAKAVVQHKDGFRTPLSWEESLALFDQPADLTAKHIEDQVFLGD 231 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF-SQRFLEDR 297 D LI + + N + A + KIS N LP E F + R + Sbjct: 232 EAALFDTLIPP--MQAKGGNDAKTAVKLKKISGL-----NFSALPALEEIFLTGRKAKPP 284 Query: 298 TKAG-GETPRHPL-------FEAIDQLLAEPLSIRDLVITRALAEIRETVAR-------- 341 +A G P P A+D + + RD + A+ + R Sbjct: 285 FRAKIGTLPTKPTQDVVSDAMPALDDFMCRVETARDARVGLLAAQKTYALHRFAGSFLPL 344 Query: 342 ---EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA----MIDEFQDTDPQQY 394 +K RG L FDD++ R + L S E +AA + R ++DE QDT P Q+ Sbjct: 345 YEEQKTLRGWLDFDDLIDRARALL---SDEDVAAWVLFRIDGGIDHILVDEAQDTSPAQW 401 Query: 395 RIFRRIW---------HHQPETALLLIGDPKQAIYAFRGAD----------IFTYMKARS 435 + R++ + + + ++GD KQ+IY+F+GAD + ++A Sbjct: 402 DVIRKLAAEFTSGEGARQEVQRTVFVVGDKKQSIYSFQGADPREFDRMQAEFASKIEAAE 461 Query: 436 EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA--GKNQALRFVFKG 493 ++ + TL ++RSA ++ V++ F DA + I K G+ V Sbjct: 462 QLFQNKTLAFSFRSASAILGVVDRTFDGLTDAGFTTDEQHIAFKQTLPGRVDIWPVV--- 518 Query: 494 ETQPAM--KMWLMEGESCGVGDYQSTMAQVCAAQIR-----DWLQAGQRGEALLMNGDDA 546 E QP+ + W + + +A+ A QI+ D + +R + + Sbjct: 519 EPQPSEEDRAWHDPIDRKAAHHHSVILAERVATQIKAMIAHDTIPDEKRSDGKITR---- 574 Query: 547 RPVRASDISVLVRSRQ-------EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 RPV+A D +LV+ R A + +D L+I ++R V L +++ L Sbjct: 575 RPVQAGDFLILVQRRSVLFTEIIRACKNKD----LDIAG---ADRLKVGGELAVRDLAAL 627 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND---EHAWDVVVEEFDGYRQIWRKRG 656 L + PE +L S L + + G + ++ L + +H W + D Y + + Sbjct: 628 LSFLAVPEDSLSLASTLRSPLFGWSEKELFQLAHHREHDHLWQALRMRSDAYPETLK--- 684 Query: 657 VMPMLRA---LMSARNIAENLLATAGGERRLTDILH------ISELLQEAGTQLESEHAL 707 V+ LRA + ++ E +L G R L L I+ LL +A L E Sbjct: 685 VLRDLRANVDFLRPYDLIERILTRHNGRRNLLARLGVEAEDGINALLSQA---LAYERNA 741 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP--FITNFRVQEQ 765 V L+ ++ +++ + +++S + ++++T+H +KGLE P+V LP N V++ Sbjct: 742 VPSLTGFLVWMETDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVILPDSGKRNNPVRDD 801 Query: 766 AFYHDRHSFEAVLDLNAAPESV----DLAEAERLAEDLRLLYVALTRS 809 D N P ++ D A + AE LRLLYVALTR+ Sbjct: 802 IIILDDKPVWKT-PANDTPGAMAAALDEIAAAQAAERLRLLYVALTRA 848 >UniRef50_Q4L4Y3 ATP-dependent helicase/nuclease subunit A n=65 Tax=cellular organisms RepID=ADDA_STAHJ Length = 1225 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 183/951 (19%), Positives = 376/951 (39%), Gaps = 143/951 (15%) Query: 290 SQRFLEDRTKAGGETPRHPLFEAIDQLLAE--PLSIRDLVITRALAEIRETVAREKRRRG 347 ++ F +D K E L + + L + L+ R + + + +I A +KR R Sbjct: 306 AKDFFDDYKKLLSEVKNKYLMRSYEDLKVDMKRLAPRIQYLVQIVKDIINGFAEKKRSRN 365 Query: 348 ELGFDDMLSRLDSALRSESGEV--LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-HQ 404 L F D L + G +A R++F ++DE+QDT+ Q I +I + Sbjct: 366 VLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIISKIKRGDE 425 Query: 405 PETALLLIGDPKQAIYAFRGADIFTYM-------KARSEVHAHYTLDTNWRSAPGMVNSV 457 L ++GD KQ+IY FR AD +M K + L N+RS ++ + Sbjct: 426 SNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGLRIDLSKNFRSRKEVLATT 485 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 N LF D M E+ I + + + ++ P L++ +S +S Sbjct: 486 NYLF----DHMMDEEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSDNDLEKSE 541 Query: 518 M-AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 A+ A Q++ ++ Q + M + R DI +L R + A ++ I Sbjct: 542 QEARYIAEQVKYIIEHKQVYD---MKSETYRQATFKDIVILERGLKNARNLQQVFKDYNI 598 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG-----LNALDIETL 631 P ++++++ FE E + +L L+ V P ++ L + + + L + ++++ Sbjct: 599 P-FHVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLVGLMRSVIYQFTEDELANIRVQSM 657 Query: 632 NND------------EHAWDVVVEEFDG-------YRQIWRKRGVMPMLRALMSARNIAE 672 N+D + A ++VE+ + Y++ + V ++ + + + Sbjct: 658 NDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQEYSQSHPVYQLIDKFYNDHYVIQ 717 Query: 673 NLLATAGGERRLTDILHI-SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 GG+ R ++ + ++ ++ + + +R++ + ++E + + + + + Sbjct: 718 YFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDE-LIERNKDFGEENV-IGP 775 Query: 732 DKHLVQIVTIHKSKGLEYPLVWL--------------PFITNFRVQEQAFYHDRHSFEAV 777 + ++V+++T+H SKGLE+P V P I N Q+ D E Sbjct: 776 NDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPLILN---QKYGLGIDYFDLEQN 832 Query: 778 LDLNAAPESV--DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD---TD 832 + + V + E E ++E++RL+YVALTR+ L + + + +K + Sbjct: 833 VTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLIL-IGTIDKEEALEKLERLPIS 891 Query: 833 VHQSALGRLLQKGEPQDAA-----------------------GLRTCIEALCDDDIA-WQ 868 +Q AL + L P D L + D IA ++ Sbjct: 892 GNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYRFEKSIDNLDESLRPTVDIKIAQFE 951 Query: 869 TAQTGDNQPWQ----VNDVSTAELNAKTLQRLPGD--NWRVTSYSGLQQRGHGIAQDLMP 922 D++ Q ++D+ + TL++ D +++ ++ +L Sbjct: 952 ELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFKYPYLKDTEKPSKQSVSELKR 1011 Query: 923 RLDVDAAGVA-----------SVVEEPTLTPHQFPRGASP-GTFLHSLFEDLDFTQPVDP 970 +L+ + +G + S E P R A+ GT +H++ + L F + Sbjct: 1012 QLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGTLMHTVMQHLPFKET--- 1068 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLS-QLSARNKQVEMEFYLPISE 1029 E L ++I +++ + E Q A + + Y+ I Sbjct: 1069 -------------RMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYMTI-- 1113 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFM----QVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 +Q D + R+ P ++ M + +++G IDL+F + +YY +DYK++ Sbjct: 1114 ----TQADKVYREL-PFVVNQARVDEMPESDEDVSIIQGMIDLIFLKDDQYYFVDYKTDA 1168 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 + T + + ++ +Y +Q + Y L L ++ Y Y FG Sbjct: 1169 FNK-RRGMTDEEVGIQLR-DKYKIQMKYYKNTLETILNSKVYGYLYFFQFG 1217 >UniRef50_A7BUG6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BUG6_9GAMM Length = 358 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 103/202 (50%), Gaps = 22/202 (10%) Query: 669 NIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQM 727 + LL GERRLT++LH E LQ+ Q + AL +WLS + S A QQ+ Sbjct: 6 QVQPRLLTYPDGERRLTNVLHAGEALQQVAVQQKLGMTALCQWLSLQRQQ-QSAAEEQQL 64 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEAVLDLNAA 783 RLESD+ LV+IVTIHKSKGLEYP+V+ PF+ + + +Q +HD + LDL + Sbjct: 65 RLESDEKLVKIVTIHKSKGLEYPIVFCPFVWDGHLYNSKSDQFIFHDEQE-KMTLDLGSE 123 Query: 784 PESVDLAEA--ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 A A E AE+LRL YVA+TR+ C L D S L L Sbjct: 124 EIEAHRARALDEERAENLRLFYVAVTRAKHRCYLVWGAF----------KDASTSTLAHL 173 Query: 842 LQKG---EPQDAAGLRTCIEAL 860 L G E D LR ++++ Sbjct: 174 LHPGVALEKTDDTILRQSLQSI 195 >UniRef50_B2IGN4 Double-strand break repair helicase AddA n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IGN4_BEII9 Length = 1164 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 139/559 (24%), Positives = 231/559 (41%), Gaps = 86/559 (15%) Query: 314 DQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAA 373 D+ A + R L + I E K +G L F+D++ R + L + Sbjct: 339 DKQKAAAILARTLALLSLTEAIFERYEASKAHQGFLDFNDLIERTKALLFRSDARWVLYK 398 Query: 374 IRTRFPVAMIDEFQDTDPQQYRI-------FRRIWHHQPET-ALLLIGDPKQAIYAFRGA 425 + ++DE QDT Q++I F + +T +GD KQ+I++F+GA Sbjct: 399 LDAGIDHILVDEAQDTSEAQWKILEEMTGDFASGLSSRVDTRTFFAVGDEKQSIFSFQGA 458 Query: 426 --DIFTYMKAR--------SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD--DAFMFREI 473 +F M+ R + H L ++RS PG++ +V+++F + Sbjct: 459 APHMFDQMRRRFNARFDAGEKAFNHVRLTDSFRSVPGILETVDQIFDHAGHYQGLVAAND 518 Query: 474 PFIP-----VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 P++P + G + V ET+ ++ W + + D + +A A +I Sbjct: 519 PWMPHTALKAQLPGLVELWPLVGPSETED-IRDWTLPLDFPDEHDPPNIVAWRVAQKIAH 577 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE--AAQVRDALTLLEIPSVYLSNRDS 586 L + E + RP+RA DI +LVRSR AA +R AL L+IP V ++R + Sbjct: 578 LL-TDRAHEHVYDEKQGLRPIRAGDILILVRSRGPFFAAIIR-ALKQLQIP-VAGADRLA 634 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 + + + +++ +A + P+ + TL L + ++GL D+ L A FD Sbjct: 635 ILQHIAVMDLIAAGRAALLPQDDLTLACVLKSPLIGLTDEDLIALAPGRPA-----SLFD 689 Query: 647 GYRQ--------------IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH--- 689 RQ +W +R +P LL T GG R L L Sbjct: 690 ALRQSEDPRHAAAAARLDLWHQRIGLPPF-------TFYAQLLGTDGGRRDLEARLGPEA 742 Query: 690 ---ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 I E L L+ E L + E D+ S + +E+ LV+++T+H +KG Sbjct: 743 ADAIDEFLN---LTLQHERDSTPSLVAFLAELDNRDPSVRRDMETGADLVRVMTVHAAKG 799 Query: 747 LEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAA----------PESVDLAEAERLA 796 LE +V+LP + + HD F D + A + LA+A ++ Sbjct: 800 LEAKIVFLPDT----CAKASGSHDPLVFSLGTDAHDAQILAWSSGKTKDCAALAKAREIS 855 Query: 797 ------EDLRLLYVALTRS 809 E RLLYVALTR+ Sbjct: 856 RQGEEDEHRRLLYVALTRA 874 >UniRef50_Q5GTB1 ATP-dependent exoDNAse (Exonuclease V) beta subunit, RecB n=26 Tax=Wolbachia RepID=Q5GTB1_WOLTR Length = 1119 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 126/512 (24%), Positives = 221/512 (43%), Gaps = 75/512 (14%) Query: 342 EKRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 EK + L ++D++ + L + + + + + ++DE QD Q++I + Sbjct: 371 EKSKNALLDYNDIIDLATNLLSNPDYKNWVLFNLDQKIDHILVDEAQDNSISQWKIIANL 430 Query: 401 W-----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH--------YTLDTNW 447 + + L ++GD KQ+IY F+GA+ + + H L+ ++ Sbjct: 431 CDEFFIRNDEKRTLFVVGDVKQSIYRFQGANPHLFNCMQQYFHTKSGGKDWISCQLEKSF 490 Query: 448 RSAPGMVNSVNKLFSQTDD--AFMFREIPFIPVKSAGKNQA----LRFVFKGETQPAMKM 501 RS P + V++LF+ + +F+ EI IP + + L K E Q A+++ Sbjct: 491 RSTPETLTLVDRLFNNFREEISFVDSEIKHIPYRENDQGYVEIWPLLPRCKEEEQQALQI 550 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 LM + + D +AQ A +I +WL G+ +L+ + R + DI +LVR R Sbjct: 551 HLMHRKDYIITD--RLLAQAIAHKIHNWLNEGR----ILVAKN--RHIEPRDIMILVRQR 602 Query: 562 QEAAQ-VRDALTLLEIPSVYLSNRD--SVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 V L IP V RD + + + Q+++ L + ++ P + L +AL + Sbjct: 603 NMLVDYVISELKKANIPVV---GRDYFRIMDYIAVQDLIALTEFLLLPTNDLALANALKS 659 Query: 619 SMMGLNALDIETLNND---EHAWDVVVEEFDGYRQ-IWRKRGVMPMLRALMSARNIAENL 674 + D+ + D + W E Y + I+ K + L + S + ++ Sbjct: 660 PLFNFTEDDLFNIAYDRKEQSLW----ERLQNYSEDIYSKLNDLINLSHIESPLTLFTHI 715 Query: 675 LATAGGERRLTDILHISELLQEAGT---QLE--SEHALVRWLSQHILEPDSNASSQQMRL 729 L T + L E+L E Q E S A V+W+ + N + + Sbjct: 716 LRTGKKKFAARLGLECFEVLDEFMNLVLQFENPSLQAFVQWIKE-------NNPEIKNDM 768 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAP----- 784 +S+++ V+I+TIHKSKGL+ P+V+L ++S VLD AP Sbjct: 769 QSERNAVRIMTIHKSKGLQAPIVFLVDTNTV---------PKNSESIVLDAMGAPFLCGK 819 Query: 785 ---ESVDLAEAERLAED----LRLLYVALTRS 809 D + E+ ED LRLLYVALTR+ Sbjct: 820 NNNAYCDQVKREKKLEDYNEYLRLLYVALTRA 851 >UniRef50_B2A610 ATP-dependent helicase/nuclease subunit A n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=ADDA_NATTJ Length = 1282 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 127/547 (23%), Positives = 232/547 (42%), Gaps = 99/547 (18%) Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 K++RG + F D L L + E+++ + R+ M+DE+QD + Q I ++ Sbjct: 369 KKQRGIMDFSD-LEHYVYELLDQYPEIVSE-LHQRYDEVMVDEYQDINQVQNAILEKLTG 426 Query: 403 HQPETA-LLLIGDPKQAIYAFRGA------DIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 Q + L ++GD KQ+IY FR A + + RSE + L N+RS+P ++ Sbjct: 427 QQSISPDLFMVGDVKQSIYRFRLAEPELFLNKYDTFDQRSEEGSLIELQENFRSSPMVLE 486 Query: 456 SVNKLFSQ----TDDAFMFRE-IPFIPV----------------KSAGKNQALRFVFKGE 494 SVN LFS+ + + E + IP K G+ + V G Sbjct: 487 SVNYLFSRIMTGSLSGIEYNEKVKLIPASKPRELYLNEDDNEDDKYEGQAENENQVIDGR 546 Query: 495 TQPAMKMWLMEGESCGVGDYQSTM-AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 T+ + L+E + + + AQ+ A I ++ R + DD R + SD Sbjct: 547 TE----VHLLENKDTNSREEDTEREAQLIATTINSLVEEEYR--IYDRDLDDYRKLDYSD 600 Query: 554 ISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 +L R +E A+ V + +P +Y F E Q ML LL+ + P ++ L Sbjct: 601 FVILSRKTKEQAELVTNVFQEHGVP-LYAELDTGYFAAQEVQVMLSLLKIIDNPRQDIPL 659 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDV----------------------------VVEE 644 L + ++GL++ ++ + D + Sbjct: 660 AGVLRSPLVGLDSNELVEIRRSNPGTDYYEACKRVLTNSIEQQNQCSEKTIQKMQKFFSQ 719 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-- 702 + +R+I R+R + ++ + + + + GG R ++ + Q + Sbjct: 720 LERWRRISRERSLAELIWDIYQITDYLDYVAGFPGGRERQANLWS----FYDRALQFDSF 775 Query: 703 SEHALVRWLS--QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TN 759 S LV++L+ + ++E D + + + ++++V++++IHKSKGLE+P+V++ + N Sbjct: 776 SHSGLVKFLNFIEKLVEQDFDLGKART-VSENENVVRLMSIHKSKGLEFPVVFVMGLGNN 834 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE-----------------AERLAEDLRLL 802 F +Q H DL P+ VDL E LAE++R+L Sbjct: 835 FNFNDQKGDLLLHK-----DLGLGPKLVDLTNRIKYPTIAHQAIKGSLGRETLAEEMRIL 889 Query: 803 YVALTRS 809 YVA+TR+ Sbjct: 890 YVAMTRA 896 >UniRef50_C0GDI3 Recombination helicase AddA n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDI3_9FIRM Length = 1229 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 142/556 (25%), Positives = 238/556 (42%), Gaps = 85/556 (15%) Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES---GEVL----AAAIRTRFP 379 V+T +A + K+ G L F+D+ L +E GE++ A +R R+ Sbjct: 338 VLTSLVARFAGEYGQAKKMYGLLDFNDLEHHCLQILMAEDAPPGEIIPSEAAREVRARYE 397 Query: 380 VAMIDEFQDTDPQQYRIFRRIWHHQPETA--LLLIGDPKQAIYAFRGAD--IFT-----Y 430 ++DE+QD +P Q I + Q ET L ++GD KQ+IY FR D +F Y Sbjct: 398 HVLVDEYQDINPVQDAILTLV-SRQGETTPNLFMVGDVKQSIYRFRLGDPGLFLERYRRY 456 Query: 431 MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ---TDDAFMFREIPFIPVKSAGKNQAL 487 + + L N+R G+V +VN LF Q T A + + V A + Sbjct: 457 PAEKGKKERKLLLSKNFRCRHGVVTAVNYLFRQLMTTQAAELEYDREAELVCGAHYPEPS 516 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQST-----------MAQVCAAQIRDWLQAGQRG 536 + + + + + L+E E G D Q A V A QI L G G Sbjct: 517 Q---ECKISGLVDVHLLEREQDGDHDRQGDDEGEDLDALEREATVIAGQILVLLN-GPDG 572 Query: 537 EALLMNGDDA--RPVRASDISVLVRSRQEAA-QVRDALTLLEIPSVYLSNRDSVFETLEA 593 + + ++ RPV DI +L+R+ +A ++ + L IP+ Y F E Sbjct: 573 ARYVFDKEEKAYRPVTYRDIVILLRATSNSANRLVEILARHGIPA-YADLSSGYFAATEV 631 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-----NDEHAWDVVV----EE 644 + ML LLQ V P ++ L + L + ++GL D+ + ND+ +D V+ ++ Sbjct: 632 ETMLSLLQVVDNPRQDIPLAAVLRSPLVGLTVEDLAAVRQAGERNDDF-FDAVLAASQQQ 690 Query: 645 FDG--------------YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHI 690 F G +R + R+ + + A+ ++ + G +R ++ Sbjct: 691 FPGLSEKLTDFLTTLERWRTLARRETLATFITAVYRESGYSDYVAGLPDGAQRQANL--- 747 Query: 691 SELLQEAGTQLE--SEHALVRWLS--QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 L Q + + L R+LS + + + + + L +++V+I++IHKSKG Sbjct: 748 -RALFSRARQFDRFARQGLFRFLSFIEQLRRSGEDLGTARA-LGEKENVVRIMSIHKSKG 805 Query: 747 LEYPLVWLPFI-TNFRVQEQAFYHDRHSFEAVLDLNAAPES------------VDLAEAE 793 LE+P+V L + F Q+Q H + L PE + EAE Sbjct: 806 LEFPVVILGDLGKTFNFQDQRSEMLVHRRLGLGPLIVEPEKKLRYPSLPYLALKIMGEAE 865 Query: 794 RLAEDLRLLYVALTRS 809 AE++R+LYVALTR+ Sbjct: 866 TRAEEMRVLYVALTRA 881 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG GKT + +RLL PL ++ LLVVTFTEAA AE+R RI + Sbjct: 21 LVSAAAGAGKTAVLVERIIRLL------CHEENPLDIDRLLVVTFTEAAAAEMRERISAA 74 Query: 80 IHE 82 + E Sbjct: 75 MEE 77 >UniRef50_A8PMU3 UvrD/REP helicase n=1 Tax=Rickettsiella grylli RepID=A8PMU3_9COXI Length = 1135 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 123/487 (25%), Positives = 207/487 (42%), Gaps = 70/487 (14%) Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI---WHHQPETALLLIGDPKQAIYA 421 E+ LA A+ ++DEFQDT P Q R+ ++ W Q L L+GDP Q+IY Sbjct: 395 ENPTDLALALDYHIQHLLVDEFQDTSPLQLRLIEKLITGWEKQDGRTLFLVGDPMQSIYR 454 Query: 422 FRGADIFTYMKARSEVHAHY-----TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI 476 FR A++ +++ R + TL N+RS G+V+ VN FSQ + + P Sbjct: 455 FRKAEVCLFLEVRQRGIGSFPLQPLTLRVNFRSTSGIVDWVNHSFSQ-----LLPDNPNR 509 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 + + G + + + + + ++ + E +G+ A QI +Q +R Sbjct: 510 SIDAIGYSPSDAYTCSSQAEKSVFTYWQLAEDSVLGEIAE------AEQIVTTIQKIKRE 563 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 + + I++LVRSR + L +IP L DS+ E Q++ Sbjct: 564 DP------------SGSIALLVRSRSHLHPILPRLRQAKIPYQAL-EIDSLAEKSALQDL 610 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLN--NDEHAWDVVVEEFDGYRQI--- 651 L L +A+ + + L + GL+ D+ + ND++ + E+ + +I Sbjct: 611 LSLTRALHHFGDSISWLALLRSPYCGLSLRDLYQIIQWNDKNKKTTIWEQLKEFEKIPLS 670 Query: 652 ----WRKRGVMPMLR------ALMSARNIAENLLATAGGERRLT---DILHISELLQEAG 698 R R ++P+L+ +S + GG L+ ++ I Sbjct: 671 LKTKQRLRRIVPVLKYSLQQQGRVSFPQWVKQTWLYLGGPTTLSHWEEMDDIETYFNFLA 730 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 T+L++E +L H E +Q D H VQI+T+HK+KGLE+ V LP + Sbjct: 731 TKLKTEGDSFDFLRIH--EELQTLYTQST--SHDTHAVQIMTLHKAKGLEFDHVILPGLH 786 Query: 759 NFRVQEQ---AFYHDRHSFEAVLDLNAAPESVD-----------LAEAERL--AEDLRLL 802 E Y ++ S + AP +D LAE ++ AE +RLL Sbjct: 787 RSNRPEPYPLLLYSEQRSVLHQKNFLLAPIPIDPQEPDLIYNYLLAEEQKKNQAERIRLL 846 Query: 803 YVALTRS 809 YVA TR+ Sbjct: 847 YVACTRT 853 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 16/130 (12%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 +++A AG+GKT + YL LL A P P E ++ +TFT A E+R RI + Sbjct: 25 IVQAPAGSGKTELLVRRYLTLL------ARVPYP---EAIIAITFTRKAANEMRLRIMTA 75 Query: 80 I---HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + HE I +++ + L ++ + + +W LL+ + + TI FCQ + Sbjct: 76 LTVAHEKNITAVQDKDKERHF--LAQKALLQNKTFEWNLLSHP--NRLRILTIDSFCQSL 131 Query: 137 LNLNAFESGM 146 ++G+ Sbjct: 132 TRQMPLQAGL 141 >UniRef50_Q73RK3 ATP-dependent DNA helicase, UvrD/Rep family n=2 Tax=Bacteria RepID=Q73RK3_TREDE Length = 1139 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 138/576 (23%), Positives = 231/576 (40%), Gaps = 96/576 (16%) Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 L E+++ EK++RG L F D+ L ++ L + + MIDEFQD + Sbjct: 301 LNELQKEYIYEKKQRGLLTFSDVSQLAVDVLINDID--LRNFYKKNADIIMIDEFQDNNS 358 Query: 392 QQYRIFRRIW-------------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 Q + I H L +GD KQ+IYAFRGAD+ + K ++ Sbjct: 359 LQRDLLFLIAEKFERSEKFVPGPHELCPNKLFFVGDEKQSIYAFRGADVSVFRKLADDIS 418 Query: 439 -----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP-------FIPVKSAGK-NQ 485 A L N+R+ P ++N N +FS+ + E+ F+P A Sbjct: 419 DKERLAATRLLINYRTEPTLINLFNTIFSKV----FYSEVNKPLEKNGFVPAYEAEYVPT 474 Query: 486 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM-------AQVCAAQIRDWLQAGQRGEA 538 R KG +P +++ + + + S A A +I + G + Sbjct: 475 ETRAPVKG-IEPKIEIMFFDKKRFNALEDSSRFLSPVEAEAFYLAKRILELRNQGFK--- 530 Query: 539 LLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 + +G AR SD +VL+R+ + + IP + R +F ++ Sbjct: 531 -IRDGKSARACSWSDFAVLLRASTKQSTYERVFRNFGIPYRSVQQR-GLFNDAPINDIYA 588 Query: 599 LLQAVMTPERENTLRSALATSMMGL--NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRG 656 +L+ + P + T L + + + +A + LN + A+D+ + E ++ Sbjct: 589 MLKIIAYPSDKKTYAQVLHSPFVNIDDDAFAVLLLNFTK-AFDISLAE------KLNEKN 641 Query: 657 VMPMLRALMSARNIAENLLATAGGE---------------------RRLTDIL-HISELL 694 LRA + +N+L + E D+ ++ EL Sbjct: 642 KDAYLRACDLFARLNKNILTMSCAESVTYLWYEEAYRYFLLSNEENHHYMDLYDYLFELA 701 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 +A + V LS HI E + ++ L+ K VQ +T+HKSKGLE+P+V + Sbjct: 702 CQADINGLTFSQFVDLLSSHI-EDNERLDDMELPLDDQKDSVQFLTVHKSKGLEFPIVIV 760 Query: 755 PFITNFRVQEQ----AFYHDRHSFEAVLDLNAAP-----------ESV-DLAEAERLAED 798 P N + E+ FY++ VL AP ES+ D A A+ +AE Sbjct: 761 PDCGNRGIPEKKEGLVFYNEDMG--PVLYSPKAPGLPAKAGNLIFESLRDEANAKLVAET 818 Query: 799 LRLLYVALTRSVWHCSL-GVAPLVRRRGDKKGDTDV 833 RLLYVA TR+ + + GV ++ K DV Sbjct: 819 KRLLYVAATRAESYLIISGVYNHLQNEDSKDSKKDV 854 >UniRef50_B8GTW0 UvrD/REP helicase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTW0_THISH Length = 1147 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 135/517 (26%), Positives = 222/517 (42%), Gaps = 96/517 (18%) Query: 382 MIDEFQDTDPQQYRIFRRIWHH------QPETALLLIGDPKQAIYAFRGAD--------- 426 +IDEFQDT+P Q+R+ + + ++ L+GD KQ+IY+FR AD Sbjct: 404 LIDEFQDTNPTQWRLILPLLEELAAHGERQGRSVFLVGDTKQSIYSFRRADPRLQEIAAR 463 Query: 427 -IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP-FIPVKSAGKN 484 I + R E TLD +WRS+P +++ VN++F+ + +P F P + K+ Sbjct: 464 WIEERLNGRPE-----TLDWSWRSSPAVMDFVNRVFTAC--PALRAALPGFHPHDTHLKD 516 Query: 485 QALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM------------AQVCAAQIRDWLQA 532 R Q + S G+ D +T AA+IR+ + Sbjct: 517 LWGRVEVWPLIQADQETEEDTPASQGLRDPLTTPRPDPGESLHAREGARIAARIREMVDG 576 Query: 533 GQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSN-RDSVFETL 591 GQ ++ G ARP+ DI++LVR+R + DAL IP YLS R + + L Sbjct: 577 GQ----VVGRGASARPMHFGDITILVRNRTHVGAIEDALRDAGIP--YLSAARGELLDHL 630 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN-DEHAWDVVVEEF----- 645 E +++ LL+ ++TP + L L + + + ++E L + W +E Sbjct: 631 EVRDLEALLRVLITPHDDLALAQVLRSPLFDVTHRELERLADAGPGPWHERLERLAPDLP 690 Query: 646 ---------DGYRQIWRK-RGVMP---MLRALMSARNIAENLLATAGGERRLTDILHISE 692 D + WR G +P +L + N+ A + +R T + + Sbjct: 691 PGSALKRAADKLTR-WRAWSGALPVHDLLDRIFLDGNVLARYQAGSRADRVPTVMASLIR 749 Query: 693 LLQEAGTQLESEH--ALVRWLSQ-HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 L E +++S +LV +L++ L S+A+ + + V+I+TIH SKGLE Sbjct: 750 FL-ELALEVDSGRYPSLVHFLARLRGLRDRSDAAPDTPPVRGAEQRVRIMTIHASKGLEA 808 Query: 750 PLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAA----------PESVDLAEAERLA--- 796 P+++L A D ++E ++ A P S D+ R A Sbjct: 809 PVIFL-------ADAAAVPRDHKTYEPLVQWPAGEPRPRLMQLLPRSDDVDSLTRQALAH 861 Query: 797 -------EDLRLLYVALTRSVWHCSLGVAPLVRRRGD 826 E+ LLYVALTR+ L V+ R +GD Sbjct: 862 HQTAREREEANLLYVALTRA--RQVLIVSASARGKGD 896 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 27/150 (18%) Query: 23 ASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 ASAG+GKT+ + LRLLL A RP + +L VTFT A E++ R+ + E Sbjct: 28 ASAGSGKTYLLVTRILRLLL------AGARP---DGILAVTFTRLAAGEMQSRLTERLRE 78 Query: 83 LRIACLRETTDNPLYERLLEE----IDDKAQAA-----QWLLLAERQMDEAAVFTIHGFC 133 +T D+ +R L + +DD + + LLA+R + T H FC Sbjct: 79 W------QTLDDTALDRALADMGVSVDDAVRERARRLFEQTLLADRPVR---ATTFHAFC 129 Query: 134 QRMLNLNAFESGMLFEQQLIEDESLLRYQA 163 Q +L E+ + +L ++E L+ +A Sbjct: 130 QDLLARFPLEARVPPGFELADNERELQDRA 159 >UniRef50_A6NVW3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVW3_9BACE Length = 1206 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 215/861 (24%), Positives = 330/861 (38%), Gaps = 169/861 (19%) Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEV--LAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 A EK RRG L F D+ L E G LA R+ M+DE+QDT+ Q IF Sbjct: 350 AAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLAKQWSGRYDEIMVDEYQDTNAVQNAIF 409 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT----------LDTNW 447 I Q L ++GD KQ+IY FR AD +++ + T L N+ Sbjct: 410 SAI--SQDGRNLFMVGDVKQSIYRFRLADPTIFLEKYRTFTPYETAEEGEPRRIILSKNF 467 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ--ALRFVFKGETQPAMKMWLME 505 RS ++ N F+FR I +S G+ A ++ G + P + +E Sbjct: 468 RSRAQVLEGAN---------FIFRGIM---SRSFGEMDYTADEALYPGASYPEGADYAVE 515 Query: 506 GES----CGVGDYQSTMAQVCAAQIRDWLQA---GQRGEALLMNG-------DDARPVRA 551 ++ G GD + + RD L+A +R + L G RP Sbjct: 516 LDALDLAAGGGDDEDESGEKTP---RDLLEARFLAKRIKELKDGGFPVSDGEGGTRPAGY 572 Query: 552 SDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 D+ +LVRS AL +IP + D FET E L LLQ V P ++ Sbjct: 573 GDMVILVRSPNSVLHHYARALGERDIPWEADAGGD-YFETTEVSVALSLLQIVDNPRQDV 631 Query: 611 TLRSALATSMMGLNALDIETL---------------NNDEHAWDVV--VEEFDGYRQIWR 653 L S L + + G A + L +E D + E + R Sbjct: 632 PLISVLRSPVYGFTADRLAVLRAASPDTDFYAALVKGAEEGGVDCAAFLAELEDLRFRSG 691 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 R +L + N+ A GE+R ++L + EL ++ + L +L+ Sbjct: 692 DRNSHQLLWQIYDRTNLLGIFGAMDEGEKRQGNLLALCELARQ--FEAAGHKGLFGFLTY 749 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF----RVQEQAFYH 769 D+ + + V+I++IHKSKGLE+P+V L +T +Q +H Sbjct: 750 LTRLRDNGGKLAAPQAAREGGGVRILSIHKSKGLEFPIVLLSGLTRRLNRDDMQRPILFH 809 Query: 770 DRHSF-EAVLDLNAAPESVDLA--------EAERLAEDLRLLYVALTRS----VWHCSL- 815 + LD E LA E E +AE+LRLLYVA+TR+ + C+L Sbjct: 810 PQLGVGPKRLDTERMIEYPTLARRAVARQLEYEMMAEELRLLYVAMTRAKEKLILSCALT 869 Query: 816 -GVAPLVRRRGDKK---------GDTDVHQSALGRLLQKGEPQDAAGLR---------TC 856 G A L + D + G V Q L +L + DA +R Sbjct: 870 RGAADLRKLAEDAEYPADPQVLSGCQSVGQWVLLPVLTR---PDAVAIRRAADYPLPIAA 926 Query: 857 IEALCDDDIAW------------QTAQTGDNQPWQVNDVSTAELNAKTLQRLP--GDNWR 902 E D DI W +TA +N V D +L + P GD Sbjct: 927 AELGPDWDIRWVDGSDLLQPPERKTAVLSEN----VEDKPVGDLTGVLTWKYPYAGDVEI 982 Query: 903 VTSYSGLQQRGHGIAQDL-----MPRLDVD-----AAGVASVVEEPTLTPHQFPRGASP- 951 + + Q +G + Q+ +P+ + + AG S + P +F G +P Sbjct: 983 PSKLTATQLKGRELDQEAGAEFPLPQGEPEEPAAVPAGKRSTLRRPRFAEEEF--GLTPA 1040 Query: 952 --GTFLHSLFEDLDFTQPVDPNWVRE---KLELGGF--ESQWEPVLTEWITAVLQAPLNE 1004 GT LH + + +DF + V+E +L G + Q E V I A Q+PL Sbjct: 1041 QKGTALHLVMQYIDFERAGTEEQVKEEIARLVAGAYITPEQGEAVNPAKIAAFFQSPLGR 1100 Query: 1005 TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL-EFMQVRGMLK 1063 + +S R E +F + + P + CP E QV +L+ Sbjct: 1101 E--MMESVSLRR---EFKFSILV-----------------PAADYCPGAGEGEQV--LLQ 1136 Query: 1064 GFIDLVFRHEGRYYLLDYKSN 1084 G +D F ++D+K++ Sbjct: 1137 GVVDCCFETLEGITVVDFKTD 1157 >UniRef50_A5D1P3 ATP-dependent helicase/nuclease subunit A n=2 Tax=Peptococcaceae RepID=ADDA_PELTS Length = 1269 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 138/560 (24%), Positives = 234/560 (41%), Gaps = 91/560 (16%) Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEV---LAAAIRTRFPVAMIDEFQD 388 E T + K RG + F+D+ L + SG V +A ++ +F ++DE+QD Sbjct: 362 EFDATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSGAVPSQVAHELQEKFVEVLVDEYQD 421 Query: 389 TDPQQYRIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------- 439 + Q I + + + ++ L ++GD KQ+IY FR A+ ++K + A Sbjct: 422 INAVQETILQMVSRKGEGQSNLFMVGDVKQSIYRFRLAEPGLFLKKYASFSAGTGGGQGR 481 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQT-----------DDAFMFREIPFIPVKSAGKNQ--- 485 L N+RS G+V++VN +F Q DA + + PV N Sbjct: 482 RLALTANFRSRQGVVSAVNFIFKQIMTPAVGEMAYGSDAMLVYGADYPPVPEGQGNYEEA 541 Query: 486 -ALRFVFKGETQPAMKMWLME---GESCGVGDYQSTM-----------AQVCAAQIRDWL 530 L V +G PA K + GE G A++ A +I++ L Sbjct: 542 VELHLVERG---PAGKDGGGDDPAGEEADGGVEAVEEIEEELEAGQKEARLVARRIKELL 598 Query: 531 QAGQRGEALLMNGD----DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 GE L D RP+ D++VL+R+ A E Y Sbjct: 599 GGSPGGEHALEIYDRELKKYRPLTYRDVAVLLRATAGYANSFVEEFRREGIPAYAELSTG 658 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD---IETLNNDEHAWDVVV- 642 FE+ E + ++ LL+ + P ++ L L + +GL A D I + +D VV Sbjct: 659 YFESTEVETVISLLKVIDNPRQDIPLAGVLRSPAVGLKAGDLARIRLASPRGDFYDAVVA 718 Query: 643 -----------------EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 ++ + +R I R+ + ++ A+ + GG +R Sbjct: 719 ASLAGQGELSERLADFLKKLEEWRTIARQGTLADLIWAVYRDTGYYDFTGCLPGGGQRQA 778 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILE--PDSNASSQQMRLESDK-HLVQIVTIH 742 ++ L + Q E+ +L +E + RL S+K ++V+I++IH Sbjct: 779 NL----RALHDRARQFETTAFRGLFLFLRFIERLREGGRDFGAARLLSEKENVVRIMSIH 834 Query: 743 KSKGLEYPLVWLPFIT---NFRVQEQA--FYHDRHSFEAVLDLNA---APESVDLA---- 790 KSKGLE+P+V++ + NFR +A F+ D ++D A P + LA Sbjct: 835 KSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQLVDAEARVTRPTAAKLALKHR 894 Query: 791 -EAERLAEDLRLLYVALTRS 809 + E LAE++R+LYVA+TR+ Sbjct: 895 LKMEALAEEMRILYVAMTRA 914 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 29/131 (22%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFP-RPLTVEELLVVTFTEAATAELRGR 75 G+ L+ ASAGTGKT +A +R + P +P+ V+ LLVVTFT AA AE+R R Sbjct: 32 GDVLVAASAGTGKTAVLAERIIRRITD-------PIKPVDVDRLLVVTFTSAAAAEMRER 84 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I R+A RE + P E + QAA + A + T+H FC Sbjct: 85 I-------RLALAREISRRP------ESGHLQRQAA--------LLGRACISTVHSFCLD 123 Query: 136 MLNLNAFESGM 146 +L + + G+ Sbjct: 124 LLRQHFYRIGL 134 >UniRef50_A6CDV1 UvrD/REP helicase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDV1_9PLAN Length = 1171 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 126/489 (25%), Positives = 203/489 (41%), Gaps = 69/489 (14%) Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKARSEV--H 438 M+DEFQDTDP Q I R + + T L L+GD KQ+IY FR AD + + R E+ Sbjct: 381 MVDEFQDTDPVQSEIVRALCGKELLTGKLFLVGDAKQSIYRFRRADPEVFHQLRQEIPEK 440 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 L TN+RS P ++N N LF+ + PF + + F+F P Sbjct: 441 GRLPLSTNFRSQPAILNFTNCLFASAMAHYYESLTPF-DQQQHSPTPGIEFLFASPDDPD 499 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRD---------WLQAGQRGEALLMNGDDARPV 549 +K+ + T A AA+IR W + Q GE L R V Sbjct: 500 IKL---------ADAIRETEADWIAARIRQLLEDETPRIWSKNPQSGEREL------RRV 544 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 DI +L RS + AL + YL + + E ++ L Q + + + E Sbjct: 545 EPGDICILFRSLSSVSLYEKALQEHNL-DYYLVGGRAFYAQQEIYDLSNLCQYLDSSDDE 603 Query: 610 NTLRSALATSMMGLNALDIETLNNDEHAWDVVVE-------EFDGYRQIWRKRGVMPMLR 662 +L L + L+ I + + ++ + RQ+ + V+ LR Sbjct: 604 LSLLGLLRSPFFSLSDDTIYAITRHAESLTAAMQVAPPDHVRPEQKRQVRYAQAVLQELR 663 Query: 663 ------ALMSARNIA-------ENLLATAGGERRLTDILHISELLQE-AGTQLESEHALV 708 +L+ N+A LL G+R+L ++ + EL + + L + V Sbjct: 664 TKKDRLSLVELLNLALERTGYDAALLNEFLGDRKLANLRKLIELARNFEASGLFTLKDFV 723 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY 768 + + ILE + + SD +++++TIH+SKGLE+P+V + + + Q Sbjct: 724 QRIRDSILEESKEELAATLPETSD--VIRLMTIHQSKGLEFPVV---IVADMDRRSQGAS 778 Query: 769 HD---RHSFEAVLDLNA----APESVDLAEAERLA------EDLRLLYVALTRSVWHCSL 815 D + A+L+L A PE+ + E +RLLYVA+TR+ + L Sbjct: 779 KDPFLHPEWGALLNLPAERGVTPENFAFKMHRAIEQNADEDETVRLLYVAVTRAADYLIL 838 Query: 816 GVA-PLVRR 823 P RR Sbjct: 839 SAGLPYDRR 847 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 25/126 (19%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AG GKTF + +L+L+ P P + ++ +TFTE A E+R RIR Sbjct: 24 LSAGAGCGKTFVLTQRFLKLI-----EPGAP-PDRLSHIVAITFTERAAREMRDRIRET- 76 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 CL + + P EE++ W + R +D A + TIH FC +L + Sbjct: 77 ------CLDQLKNCP-----PEEVN------HWQAVI-RGLDSARISTIHSFCTSILRSH 118 Query: 141 AFESGM 146 A + + Sbjct: 119 AVSARL 124 >UniRef50_B9NIQ2 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NIQ2_POPTR Length = 292 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/132 (46%), Positives = 78/132 (59%), Gaps = 15/132 (11%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-------GSAAFPRPLTVEELLVVTF 64 R PL G RLIEASAGTGKT+TIAALYLRL+LG G S AF RPL ++LV+TF Sbjct: 129 RFPLWGSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMPPDILVMTF 188 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD-------KAQAAQWLLLA 117 T AAT EL RIR + E + C R + ++ L + + + +AA L +A Sbjct: 189 TRAATRELSDRIRRRLIEA-VQCFRGEAEPAPHDAFLHALREAYPEGAARERAAWRLAMA 247 Query: 118 ERQMDEAAVFTI 129 MD+AA+ TI Sbjct: 248 AECMDDAAIHTI 259 >UniRef50_C1TNJ9 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNJ9_9BACT Length = 1160 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 185/818 (22%), Positives = 314/818 (38%), Gaps = 154/818 (18%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 ++ A AGTGKT+T+A R + + A E+L +TFT+ A E+ RIR Sbjct: 34 VVSAGAGTGKTWTLA---WRFVWAVATGRA-----RAGEILTLTFTDKAATEMAERIRL- 84 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 L E LL + + A L ++++ + TIH F R++ Sbjct: 85 ----------------LMEGLLPKTKELPTVAAALREGLESLEDSYISTIHSFSSRVIRE 128 Query: 140 NAFESGMLFEQQLIE--DESLLRYQA--CADFWRRHCYP--LPREIAQVVFETWKGPQAL 193 + + +++ +E L Q C D R L E+ + P L Sbjct: 129 SGLSLDLDPASRVVSAPEEDLFWSQMTDCLDRLDRRWVGRNLSGEVRDFGIALMEDPMTL 188 Query: 194 -------LRDINRYLQG--EAPVIKAPPPDD-----ETLASRHAQIVAR-IDTVKQQWRD 238 + R+ +G + + P+D E L RH ++A I ++WR Sbjct: 189 ELLENYGPSGVVRFARGLMDISSSRGDRPEDLLSWAEELDERHEAVIAPLIAASVEEWRS 248 Query: 239 ---------------AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY-QL 282 +G+ I +G+ R ++ ++ID + E + +L Sbjct: 249 IHRMWCGPRGILSGLTLGDTKLGIRLAGLRDRWCEDIDEDRYIDFLRDLCEAIKGARGKL 308 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETV--- 339 +S+ E++ K E+ F I L E S R+L +TR L + Sbjct: 309 ADSIASL---LPEEKVKDHRESILSRSF--IWNLAEEGWSQRELDLTRGLLRLVALCWFC 363 Query: 340 -AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 K RG + FDDML AL E A RF ++DEFQDT+ Q R+ R Sbjct: 364 WESRKSGRGLIAFDDMLLHAGRAL--ERNREYAG----RFKEVLVDEFQDTNGLQDRLIR 417 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIF---TYMKARSEVHAHYTLDTNWRSAPGMVN 455 + + L L+GD KQ+IY FR AD+ +Y+ + + +LD ++R+ +++ Sbjct: 418 SV-VSDGDARLFLVGDLKQSIYRFRHADLSLFGSYISKARKGGRYVSLDVSFRTRDVLLD 476 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW------------- 502 VN+LF ++R+ G L ++ P + W Sbjct: 477 RVNRLFGH-----IWRD---------GLGATLHHRYESLRPPVDQPWHGARQDVSVAPWE 522 Query: 503 -----LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG--DDARPVRASDIS 555 E E D + A + AA++ G GE + + AR +R D++ Sbjct: 523 NIILEAGEDEKLSAEDRRDRSASLLAAKL-----TGMVGEETIWDKAESSARTMRWRDVA 577 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +LV SR ++ L L ++ + E Q+ + LL+ + E L Sbjct: 578 ILVPSRTLFPSIQRVLGDLWGIPLHFEKNTGYYARTEVQDCVALLRCLFDREDHLALAGY 637 Query: 616 LATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI------WRKRGVMPMLRALMSARN 669 + + GL+ D L + D+ E Y +I WR+ G++ A Sbjct: 638 ICSPFSGLSLADGSRLLDRSAGKDLSEELRGQYPEIFARLERWREIGLV------QGASR 691 Query: 670 IAENLLA---------------TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQH 714 + E L+A A RR D+L E G L + WL + Sbjct: 692 VMEELVADGAVLDRFAEWKRRGVAANLRRTVDLLR--EYESTLGNGLSGAAS---WLGEA 746 Query: 715 ILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 + + + + D+ +V+++T+H SKGLE+P+V Sbjct: 747 LRK--RAKEEEAGAVGPDEDVVRVMTVHASKGLEFPVV 782 >UniRef50_C6XMV6 Double-strand break repair helicase AddA n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XMV6_HIRBI Length = 1198 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 134/551 (24%), Positives = 226/551 (41%), Gaps = 104/551 (18%) Query: 340 AREKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 AR+KRRR + FDD++ L + S + + + ++DE QDT P+Q+++ Sbjct: 376 ARQKRRRAAMDFDDLIESAAGLLTTRSMAQWVLWKLEGGLSHILLDEAQDTSPEQWKLLN 435 Query: 399 R----------IWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--------HAH 440 + H P T + ++GD KQ+IY+F+GAD ++ R E + Sbjct: 436 ALTAEFFSGEGVEHENPRT-MFVVGDEKQSIYSFQGADPEKFLSKRQEFIEDSARAKQEN 494 Query: 441 YTLDT--NWRSAPGMVNSVNKLFSQ-------------TDDAFMFREIPF--IPVKSAGK 483 T D ++RSAP ++ V+++F +D + R +PF + S Sbjct: 495 KTPDILMSFRSAPEVLAFVDEVFDTGAFDGEAAFSLKPPEDGNIMRHLPFRRGHIGSVEL 554 Query: 484 NQALRFVFKGETQPAMKMWLMEGESCGVG-DYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 LR E+ P W +G D ++ A +I W++ + + + Sbjct: 555 WPLLRPKVNDESTP----W-----DAPLGQDLETNPKAELADRIAKWVKNIIDTKQAIFD 605 Query: 543 GDDARPVRASDISVLVRSRQEAA--QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 RP R D+ +LVR R+ + AL IP V ++R + ++L Q++L L+ Sbjct: 606 EGKMRPARPGDVLILVRGRKGGLFDSIIKALKTNNIP-VAGADRIELLDSLPVQDLLNLI 664 Query: 601 QAVMTPERENTLRSALATSMMGLNALD----IETLNNDEHAWDVVVEEFDGYRQIWRKRG 656 + + PE + TL L GLN D + DE W V++ Sbjct: 665 RFALCPEDDLTLAEILTGPFGGLNENDNLYPLAHNRGDESLWSRVLKS--------EMPS 716 Query: 657 VMPM---LRALMSARNIAENLLATAGGERRLTDILHISELLQE----------------- 696 V+P+ L+ + R+I TA E + D + + +Q Sbjct: 717 VLPVREFLQGCLERRHIQPYEFLTAVLETQGHDGMDGWQKIQSRLGPPAKEPMTALMDRA 776 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP- 755 AG + +L +L+ +E +++ D+ V+++T+H SKGLE P+V +P Sbjct: 777 AGFDAKGPSSLQLFLA--TIEKSGGEVKRELSGPQDE--VRVMTVHGSKGLEAPIVIVPD 832 Query: 756 -------FITNFRVQEQAFYHDRH----------SFEAVLDLNAAPESVDLAEAERLAED 798 + N + D H S A D A + LA+A E Sbjct: 833 TCAATKSGVDNNLLITPEKERDDHTSPPEGMPIWSGSAKQDTTLAAKLRLLADARATREH 892 Query: 799 LRLLYVALTRS 809 RLLYVALTR+ Sbjct: 893 RRLLYVALTRA 903 >UniRef50_A2RH77 ATP-dependent helicase/nuclease subunit A n=4 Tax=Lactococcus lactis RepID=ADDA_LACLM Length = 1203 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 136/599 (22%), Positives = 255/599 (42%), Gaps = 122/599 (20%) Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYM-K 432 +R + MIDE+QDT Q R+ + + L ++GD KQ+IY FR AD ++ K Sbjct: 393 LREHYDEIMIDEYQDTSHTQERMLELLSNGHN---LFMVGDIKQSIYGFRLADPGLFLEK 449 Query: 433 ARSEVHAH-----YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 +S A L N+RS ++N N +F D E+ + GK +AL Sbjct: 450 YKSYDQAENPNQLIRLKENFRSRGEVLNFTNDIFKHLMDE-KLGEMTY------GKEEAL 502 Query: 488 ------RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 + + E ++ L + E+ + + + ++ +I+ A Q + L+ Sbjct: 503 VQGNISDYPVEAEKDFYPELLLYK-ENTSEEEIEDSEVKISDGEIKG---AAQEIKKLIE 558 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 G V DI++LVRS+ ++ D L +IP V R +++E ML +L+ Sbjct: 559 YG-----VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLR 613 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETL----NNDEHAWDVVV--------------- 642 A+ P + +L + L + + G N ++ + + D WD ++ Sbjct: 614 AIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQGSRDLRFWDKILLSLKKEGKNPELINL 673 Query: 643 ----------EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS- 691 ++F +R++ K + +L + + + + A GE R ++ +S Sbjct: 674 SLEQKLKAFNQKFTEWRKLVNKIPIHRLLWKIYTETYYFDYVGALKNGEMRQANLQALSV 733 Query: 692 --ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 E + +G + VR +++ +E +++ +S ++L ++ V+++T HKSKGLE+ Sbjct: 734 RAESYESSGYK--GLFKFVRLINK-FMEQNNDLASVNIKLP--QNAVRVMTFHKSKGLEF 788 Query: 750 PLVWLPFITNFRVQEQAFYHDRHSFEAVL-------------DLNAAPESV--------- 787 V+L + Q+ ++DR E V+ DL A P+ + Sbjct: 789 DYVFL-------MNLQSRFNDRDLKEDVILSREHGLGMKYIADLKAEPDVITDFPYALVK 841 Query: 788 ----------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 DL + L+E++R+LYVA TR+ L V + + DKK +++ +A Sbjct: 842 METFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYL-VGKI--KDTDKKAGLELYDAA 898 Query: 838 L--GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 G++L + G + I AL Q P ++N + EL + L+ Sbjct: 899 TLEGKILSDKFRNSSRGFQHWILAL----------QNATKLPMKLNVYTKDELETEKLE 947 >UniRef50_D2EH37 Recombination helicase AddA n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EH37_PEDAC Length = 1238 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 134/566 (23%), Positives = 249/566 (43%), Gaps = 88/566 (15%) Query: 314 DQLLAEPLSIRDLVITRALAEIRETVA----REKRRRGELGFDDM----LSRLDSALRSE 365 DQL+A R++++ L E+++ + +EK R L F D+ L L + +SE Sbjct: 326 DQLIAIFKDAREIMLK--LIEVQQQFSDRFLQEKLTRRSLDFSDLEHFALQILQN--QSE 381 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA 425 G+ + + +F ++DE+QD +P Q I + P + ++GD KQ+IYAFR A Sbjct: 382 EGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVAREDPGN-MFMVGDVKQSIYAFRMA 440 Query: 426 DIFTYM------KARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 D ++ K + L N+RS + + N +F+Q D + EI + Sbjct: 441 DPSLFISKSRRFKQSGQPDERIILAENFRSMQNVDDFTNLIFNQIMDQAV-GEIAY---- 495 Query: 480 SAGKNQALRF---VFKGETQPAMKMWLMEGE----------SCGVGDYQSTMAQVCAAQI 526 + L+F + E Q ++ L + + + D Q+ A +I Sbjct: 496 --DADAQLKFGAKYYPAEVQNDTEVLLFDDQQNENTADQEPGAIITDKNDGQLQMIAQRI 553 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 + + E + + RP++ SDI++L + + D IP + +SN Sbjct: 554 KRLF--ADQTEVFDRDTQEMRPLKYSDIALLHSTGNNNLNIVDTFKKYGIP-IEVSNAQD 610 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL---NNDEHAWDVVV- 642 F+T E M+ LL+ + P ++ L + L + ++GL+ ++ L + H ++ V+ Sbjct: 611 YFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPIVGLDENELAFLRISKKNGHYFESVLY 670 Query: 643 --EEFD-GYRQIWR---KRGVMPMLRALMSARNIAE-----NLLATAGGERRLTDIL--- 688 EF Y+ ++ KR + L L R +++ +LL E D + Sbjct: 671 FQNEFKIDYQNEFQANLKRKIDQFLAQLQHFRKLSQQCTLVDLLWEIYQETGYLDYVGGM 730 Query: 689 --------HISELLQEAGTQLESEHA----LVRWLSQHILEPDSNASSQQMRLESDKHLV 736 ++ L A + ES VR++ + + N + + +D V Sbjct: 731 PDGPQRQNNLHALYDRAQSYEESSFKGLFQFVRFVEKM---REKNKDLAENPVVTDTEAV 787 Query: 737 QIVTIHKSKGLEYPLVWL---PFITNFRVQEQAFYHDRHS--------FEAVLDLNAAPE 785 +++TIH SKGLE+P+V+L N + + DR + F L+++ + Sbjct: 788 KLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYVLDRDAGMGITVKDFVHRLEVDTMQK 847 Query: 786 S--VDLAEAERLAEDLRLLYVALTRS 809 + +D+ + + LAE+LR+LYVALTR+ Sbjct: 848 NWIIDVRQRKMLAEELRVLYVALTRA 873 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 27/114 (23%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + ++ ++ G V+ LLVVTFTEAA AE++ RIR+ Sbjct: 22 LVSASAGSGKTSVLVERVIQKIIN--GE-------DVDRLLVVTFTEAAAAEMKERIRAA 72 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 I + + E+ D A L L +++ A + T+H FC Sbjct: 73 IM-----------------KKISEVKD-ADLQNHLSLQLGKLNNANISTLHAFC 108 >UniRef50_Q1GWU1 UvrD/REP helicase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GWU1_SPHAL Length = 1166 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 139/557 (24%), Positives = 224/557 (40%), Gaps = 130/557 (23%) Query: 337 ETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 E A KR +G FDD+++ S LR S GE + + R ++DE QDT+ +Q+ Sbjct: 359 EAYALAKREQGLADFDDLITLAGSLLRVSGFGEWVRFKLDQRTDHILVDEAQDTNMRQWG 418 Query: 396 I-------FRRIWHHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHA------- 439 I F + + A L +GD KQAI+ F+G + ++ AR HA Sbjct: 419 IVLSLAEEFFAVHGKDMDRARTLFTVGDRKQAIFGFQGTEPRAFVAARDLFHALGERAGQ 478 Query: 440 ---HYTLDTNWRSAPGMVNSVNKLFSQTDDAFM---FREIPFIPVKSAGKNQALRFVFKG 493 L +N+RS P ++ + + A M E P +P + A Q V Sbjct: 479 DFEAVDLISNYRSTPAILEVADAWLAAGGTALMGLDGAEPPHVPHRRAHAGQ----VELW 534 Query: 494 ETQPAMK-MWLMEGESCGVGDYQST-----------MAQVCAAQIRDWLQAGQRGEALLM 541 E P K + E GV D + +A+ AA+++DW+ Sbjct: 535 EPLPVGKALGATEEADEGVDDNGNATAPARDPASMRLAKAIAAEVQDWIA---------- 584 Query: 542 NGDDARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 NG D RPV D+ +LVR R++ AA++ L L +P V +R ++ + L Q+++ + Sbjct: 585 NGKDGRPVAPGDVMILVRRRRDLAARIVARLQALHVP-VAGVDRFALTQPLAVQDLMAAM 643 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIW-------- 652 + + P + L + L + ++G D+ G IW Sbjct: 644 RFAVQPHDDLNLAALLVSPLIGWTQDDLYDRTRGR-----------GRTPIWMYLRAHQD 692 Query: 653 -RKRGVMPMLRALMSARNIA------ENLLATA-GGERRLTDILH------ISELLQEAG 698 M LR ++ + E LL+ G R+L L I ELL +A Sbjct: 693 MMPPATMATLRQILGMADYTTPFRFLETLLSGPIDGRRKLYARLGREARDPIDELLNQA- 751 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 L E L + E + +A+ + + E+ +V+++T+H SKGL+ P+V L T Sbjct: 752 --LAFEARKTVSLLGFLAEIEGSAADIKRQTEARGGVVRVMTVHGSKGLQAPIVILADAT 809 Query: 759 NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLA---------------------- 796 + + AF H P +VD+A E+L Sbjct: 810 D----DAAFGHR-------------PFTVDVAAWEKLPVYAIGADERHGALADAYAKAKA 852 Query: 797 ----EDLRLLYVALTRS 809 E RL YVA+TR+ Sbjct: 853 AADEEHWRLFYVAMTRA 869 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 28/150 (18%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + ASAGTGKT ++A LRLLL ++ E +L +TFT+A AE+ RI + Sbjct: 26 LGASAGTGKTQVLSARVLRLLL---------DGVSPEAILCITFTKAGAAEMAHRIHQRL 76 Query: 81 --------HELRIACLRETTDNPLYERLLEEIDDKAQA------AQWLLLAERQMDEAAV 126 ELR+ D L+ DD A A + + + V Sbjct: 77 AKWVRMEDGELRLDLQALGIDLELHGH-----DDGVPALIARARALFATVIDSPGGAIRV 131 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDE 156 TIH FCQ +L E+ +L + IE++ Sbjct: 132 QTIHSFCQTLLASFPLEAKLLPGFRAIEED 161 >UniRef50_UPI000169903F exonuclease V, beta chain with recC and recD: 5'''' and 3'''' nuclease, ATPase, recombinase, helicase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169903F Length = 138 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/122 (50%), Positives = 78/122 (63%), Gaps = 10/122 (8%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+PL PL G LIEASAGTGKT+TIA L+LRLLL L VE++LVVTFT Sbjct: 2 QPLNPLSCPLTGRLLIEASAGTGKTYTIAILFLRLLLQAR--------LEVEQILVVTFT 53 Query: 66 EAATAELRGRIRSNIHEL--RIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 E ATAELR RIR+ + E ++ L + +PL LL+ ID + +A Q L A +MDE Sbjct: 54 EVATAELRMRIRARLREALQQLRGLAQQPPDPLLRELLDGIDGRQEAQQRLEDALVRMDE 113 Query: 124 AA 125 A+ Sbjct: 114 AS 115 >UniRef50_D2MLK1 DNA helicase, UvrD/REP type n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLK1_9BACT Length = 1180 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 116/532 (21%), Positives = 213/532 (40%), Gaps = 68/532 (12%) Query: 322 SIRDLVI--TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFP 379 ++ DL+ TR L++ E K +G L F+D+ + LR E + + R Sbjct: 340 TVHDLLTLYTRVLSDYDEA----KLSQGTLDFNDLQLKTRDLLRD--NEKIRKELVDRHQ 393 Query: 380 VAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-- 437 M+DE+QDT+ QY + + + L ++GDPKQ+IY FR AD+ + K + ++ Sbjct: 394 YYMVDEYQDTNELQYELVMLLTNELKSANLFIVGDPKQSIYGFRDADVRVFNKTKQKIVR 453 Query: 438 --HAHYTLDTNWRSAPGMVNSVNKLFSQ-----TDDAFMFREIPFIPVKSAGKNQALRFV 490 +L N+RS ++ VN FS ++ F + A N A+ + Sbjct: 454 EDGKRISLTENFRSLRDVIGFVNYFFSHLMGPGNENEFEVEYEALTQARHAKTNGAIEIL 513 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 + P+ + + + M A IR + G+ E RP++ Sbjct: 514 IGQDGDPSANEYKL------IAQRIENMITDAAETIRVRDKDGKLSE---------RPIQ 558 Query: 551 ASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW-LLQAVMTPERE 609 DI++L+R+R + AL IP YL+ F + +W L + P Sbjct: 559 YDDIAILIRARTHLPDIEHALLEAGIP--YLTTGGIGFYQRQEIYDIWNYLNFLNNPSDS 616 Query: 610 N-TLRSALATSMMGLN-------ALDIETLNNDEHAWD-------------VVVEEFDGY 648 N +L + L + G++ +L ET + WD ++ + Sbjct: 617 NISLAAILRSPAFGISDAELYEISLQKETKQEKKSFWDKTLDYQGCTEQLRCAIDTLKTH 676 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALV 708 + R+ V ++ +++ + L G++R + + +L + E+ L Sbjct: 677 IEFARRMPVNRLVGTIVNETGLIGTLRTGKQGKQRWANYQKLLDLARNFDGD-ENRQILP 735 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY 768 ++ + Q +++ VQI+T+H +KG ++P+V LP + +Q + Sbjct: 736 DFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVMLPRLDKKGQTDQEPF 795 Query: 769 HDRHSFEAVLDLNAA-------PESVDL----AEAERLAEDLRLLYVALTRS 809 D L+ A P V+ A + +AE RL YV TR+ Sbjct: 796 IDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKRLFYVGATRA 847 >UniRef50_C8PEY7 Ribonucleoside-diphosphate reductase beta chain n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PEY7_9PROT Length = 479 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 124/500 (24%), Positives = 214/500 (42%), Gaps = 73/500 (14%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 +EASAG+GKTF +A ++ L+L + + E+L +TFT+ A AE++ RI Sbjct: 10 LEASAGSGKTFNLAVRFIELVL---------KGEPINEILALTFTKKAAAEMKTRIVEKF 60 Query: 81 HELRIACLRETTDNPLYERLLEEID---DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 L I +P ++ E+++ D+ AAQ LL + + VFT F + L Sbjct: 61 QNLLIVRDGALVPSPELAQICEDLNMSADEVLAAQRRLLPKFLNESLNVFTFDAFFAKAL 120 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY--PLPREIAQVVFETWKGPQALLR 195 A SG+ + DES+L Q +F C + RE+ V ++ L Sbjct: 121 RSFALNSGI--DPGFENDESILGVQQ-REFLSAICKDGAILREVVDYVSDSGMTKSEFLN 177 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRR 255 + +G+ + P L A+I + +++ RDA G+ Sbjct: 178 SLQSIWRGDISINLPTLPASSAL----AEINEILSCLQKAARDA-----------GVSAG 222 Query: 256 KFNRSNQAKWIDKISA---WAEEETNSYQLPES-LEKFSQRFLEDRTKAGGETPRHPLFE 311 N + + K+S+ + S+ P S L+K S GE R L + Sbjct: 223 AVNGLSPVSDLSKLSSGFILSALANGSFDYPRSQLKKISH--------FDGELAR--LKD 272 Query: 312 AIDQLLA---EPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG- 367 A+ + +A +++ + + AE ++V +R+ G+L F D+ + + S L + Sbjct: 273 AVAREIAWMDATYAVKLAGLIKIYAEALKSV---QRKSGKLTFGDVTAAVHSLLNPSAEA 329 Query: 368 -----EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH--------HQPETALLLIGD 414 E+L + ++ +IDEFQDTD QY I + + + +GD Sbjct: 330 LQGNRELLYFRLDSKITHILIDEFQDTDICQYEIMLPLISEALAGKGAEERCGSFFYVGD 389 Query: 415 PKQAIYAFRGAD--IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKL----FSQTDDAF 468 KQ+IY FRGA+ IF ++ + +L N+RS +V VN++ F+ +D Sbjct: 390 KKQSIYKFRGAERKIFDILREQFSQIKTQSLPRNYRSLKLIVKFVNEILRDKFASYEDQI 449 Query: 469 MFREIPF-IPVKSAGKNQAL 487 ++ +P KNQ L Sbjct: 450 AANKLDSDLPASVLTKNQGL 469 >UniRef50_UPI00016C0036 Recombination helicase AddA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0036 Length = 1186 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 198/919 (21%), Positives = 365/919 (39%), Gaps = 189/919 (20%) Query: 11 LRLPLQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69 L + LQ + L+ A+AG+GKT + ++ +L G + ++ L+VTFT AA Sbjct: 9 LAIDLQDKNILVSAAAGSGKTAVLTERVIKRVLNTG-----KNRVDIDRFLIVTFTNAAA 63 Query: 70 AELRGRIRSNIHELRIA-CLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFT 128 +E++ RI E+++ L D EE+D +L + +A++ T Sbjct: 64 SEMKERI-----EIKLGDALSTAADG-------EEVD-------YLQKQLGLLGKASIST 104 Query: 129 IHGFCQRMLNLNAFESGM------LFEQQL---------------IEDESLLRYQACADF 167 IH FC +++ + E G+ EQ+ E+ES YQ C + Sbjct: 105 IHSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAFEEESDAFYQLCDAY 164 Query: 168 WRRHCYPLPREIAQVVFETWKGPQA-------LLRDINRYLQGEAPVIKAPPPDD----- 215 + A ++ + +K Q+ L + + G+ +A D Sbjct: 165 GSVNGMD---AXASMILQIYKFTQSTVFPQKWLAQQVATLXAGDNAAFEASLAADLRLEL 221 Query: 216 ---ETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAW 272 +TL R A ++A+ + D++G + + ++ + + + + +SA Sbjct: 222 ESIQTLLER-ALVIAKKPNGPLHYADSIG----------FNLQNLSKMDLSSFANIVSAL 270 Query: 273 AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQ--LLAEPLSIRDL---- 326 A + S L+D K+ T L D +LA+P I Sbjct: 271 ANCNIAALSRKRPACDLS---LKDAAKSLSSTATSRLKYLQDNYAILADPTVISKTASIS 327 Query: 327 VITRALAEIRETV----AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTR----- 377 I + LA + T + +K+ G L F+D+ L +ES LA + Sbjct: 328 TIFKELARLVTTFETRYSEKKQDLGVLDFNDLEHYAIKLLVTESDGALAPTTVAKELGKY 387 Query: 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADI---------F 428 + IDE+QD + Q I I + ++GD KQ+IY FR ++ F Sbjct: 388 YSEIYIDEYQDVNDVQETILSAIATNGATR--FMVGDIKQSIYKFRLSNPKIFLDKYNRF 445 Query: 429 TYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALR 488 + L N+RS ++++ N++F + M + + A + A R Sbjct: 446 QQFSPTAAADIRIDLSHNFRSRAIILDAANEIFER----LMRPAVGDLIYDQAQRLYAGR 501 Query: 489 -FVFKGETQPAMKMWLMEGESCGVGDYQ--STMAQVCAAQI----RDWLQAGQRGEALL- 540 + ET ++ L+E + D + S A++ AA I +D L + + Sbjct: 502 EYATFDETAKQCELHLLELSTLDADDAEEPSNKAELEAAMIAKIVKDILDGNSNPKIVYD 561 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 + D R V DI++LVR++ + +AL + + + Y S FE E + M+ L Sbjct: 562 KDLDIYRAVEPRDIAILVRAKAVSTAFENALYKVGVDA-YAEISKSFFEATEVELMINFL 620 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNN--DEHAWDVVVEEFDGYRQIWRKRGVM 658 + + ++ S L +S++GL+ ++ + D ++ V Y+Q+ + Sbjct: 621 KIIDNINQDIPFLSVLHSSLLGLDFDELSEIRTYADGSFYNACV----AYKQLHPHSKLA 676 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLES-------EHALVRWL 711 + A G R+L+ ++ +SEL+ + Q +H +R Sbjct: 677 --------------DFFAEIEGFRKLSKMVPVSELIDQVFLQTGYLGYVSMLDHGAIRSA 722 Query: 712 SQHILEP------------------------DSNASSQQMRLESDK-HLVQIVTIHKSKG 746 + IL+ + AS QQ + D+ + V+I++IHKSKG Sbjct: 723 NLRILKQTAIDFEQNTKVGLFNFLIFLEQLRNDEASIQQAKSAVDQNNTVKIMSIHKSKG 782 Query: 747 LEYPLVWL--------------PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV--DLA 790 LE+P+V L P + + ++ A + D E +D P + Sbjct: 783 LEFPIVILANAHKRFNQMETYQPILLHNQLGLGAQFRD---MEKYVDYTTLPYLAIKNKI 839 Query: 791 EAERLAEDLRLLYVALTRS 809 E ++E++R+LYVALTR+ Sbjct: 840 FNENISEEIRILYVALTRA 858 >UniRef50_Q38X69 ATP-dependent helicase/nuclease subunit A n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=ADDA_LACSS Length = 890 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 125/473 (26%), Positives = 200/473 (42%), Gaps = 74/473 (15%) Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 RE EK RR L F D L +L + S A + +F ++DE+QDT+P Q Sbjct: 361 FREAFQAEKERRHLLDFSD-LEQLCLTILSVEDSPARAFYQQKFSEVLVDEYQDTNPLQE 419 Query: 395 RIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--------HYTLDTN 446 I +++ P L ++GD KQ+IYAFR AD + +E L N Sbjct: 420 TIIQKVTSDHPRN-LFMVGDVKQSIYAFRLADPSLFKNKYNEFGVTEAERDSERIILAEN 478 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS + + N +F Q D + E+ + ++A R+ ++ L E Sbjct: 479 FRSRRNIDDFTNLIFKQLMDENL-GELDYD--ENAALQYGARYYPDQHPTAPTELLLYET 535 Query: 507 ---ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG--------DDARPVRASDIS 555 E+ + QV A +R +A++ NG + RP+ DI Sbjct: 536 KPEEAVANPQLDKSEGQVVA--------VAKRIQAMMTNGEQIWDKKLEKMRPIEYRDIV 587 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +L +R + D +P V + + + F+T E Q ML LLQ + P ++ L S Sbjct: 588 LLAPTRGNNLFILDYFKRFGLP-VVIKDAQNYFQTTEVQIMLALLQVIDNPNQDIPLVSV 646 Query: 616 LATSMMGLNALDIETLN-ND--EHAWDVVVEEFDGYRQIWRKRG-----VMPMLRALM-- 665 L + ++GLN ++ + ND + + V D Y + +K G VM L M Sbjct: 647 LRSPIVGLNENELALIRINDKTDDYYQAVFNFIDQYNE--QKVGHLGQQVMQKLTHFMAL 704 Query: 666 --SARNIAE-----NLLATAGGERRLTDILHISELLQEAGTQLESE-HAL---------- 707 S R IA +L+ T E D ++ + AG Q ++ HAL Sbjct: 705 LTSFRTIARQQPIVDLIWTIYQETGFLD--YVGGM--PAGRQRQANLHALYERATAYEEN 760 Query: 708 -VRWLSQHI-----LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 + L Q I L+ +Q LE ++ + ++TIH SKGLE+P+V+L Sbjct: 761 GFKGLFQFIQFIERLQKQDKDLAQPTSLE-NQDAISVMTIHGSKGLEFPVVFL 812 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 27/118 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + A ++ +L + V+ LLVVTFTEAA E+R RI++ Sbjct: 25 LVSASAGSGKTSVLVARVIQKIL---------KGTDVDTLLVVTFTEAAATEMRQRIQAA 75 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + T+ + +RL +++ + A + T+H FC +++ Sbjct: 76 LRD----ASEKATEPAVKQRLRQQLS--------------LVPTAQISTLHAFCLKVI 115 >UniRef50_C7GAA3 ATP-dependent nuclease subunit A n=2 Tax=Roseburia RepID=C7GAA3_9FIRM Length = 1237 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 134/554 (24%), Positives = 247/554 (44%), Gaps = 92/554 (16%) Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLS-RLDSALRSESGEVLAAA--IRTRFPVAMID 384 + R E ET EKRR+ + F D+ L+ + E+G+V A R F MID Sbjct: 338 LVRLTLEFDETFTAEKRRKNLVDFHDLEHFALNIFVDEETGKVKKTAEEFRDNFKEIMID 397 Query: 385 EFQDTDPQQYRIFRRIWHHQ-PETALLLIGDPKQAIYAFRGA---------DIFTYMKAR 434 E+QD++ Q I R I + E L ++GD KQ+IY FR A D ++ A+ Sbjct: 398 EYQDSNEVQETILRAISREERGEYNLFMVGDVKQSIYRFRLARPELFMEKYDTYSLTDAK 457 Query: 435 SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 + L N+RS +++ N +F + M R + + + + AL + Sbjct: 458 MQ---RIDLHKNFRSRNEVLDFSNDIFYR----IMKRNLGNVEYDA---DAALYPGASYQ 507 Query: 495 TQPAM---KMWLMEGES-----CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 + M ++ L++G+ D + A++ A +I++ + G + G+ Sbjct: 508 EETDMFTPEILLVDGDDELLDDAAADDKKLLEARMIAKRIKELM--GTQKVTDKATGE-L 564 Query: 547 RPVRASDISVLVRS-----RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 RPV+ SD+ +L+RS + AA + DA IP+ +S F T+E Q +L +L+ Sbjct: 565 RPVQYSDMVILLRSLSGYADRFAAVLNDA----GIPAHTVSAT-GYFSTVEVQTVLSMLR 619 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETL---NNDEHAWDVVVEE-------------- 644 + P ++ L + L + + GL+ ++ L + + ++ V+EE Sbjct: 620 ILDNPRQDIPLTAVLRSPIAGLSDEELAKLRLKDKNVRFYECVLEECERLKQEAEENPGQ 679 Query: 645 ---------------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 ++ RQ+ + ++ L+ + A G+RR ++L Sbjct: 680 GRDDSEEKLYRFYVTYEKLRQLVPDTPIHELIELLLKETGYGDYAAAMPAGDRRHANLLM 739 Query: 690 ISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + E + T + VR++ + + + D + + + ++++V+I++IHKSKGLE Sbjct: 740 LVEKAIAYENTSYKGLFHFVRYIDE-LQKYDVDFGEADL-IGENENVVRIMSIHKSKGLE 797 Query: 749 YPLVWLPFI-TNFRVQEQAFYHDRHSFEAV----LDLNAAPESVDLA--------EAERL 795 +P+V+ + NF Q+ H + +D +SV +A + E L Sbjct: 798 FPVVFAAGMGKNFNRQDTRSRLVLHPELGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENL 857 Query: 796 AEDLRLLYVALTRS 809 E+LR+LYVALTR+ Sbjct: 858 GEELRVLYVALTRA 871 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 27/114 (23%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + ++++ P+ ++ LL+VTFT AA AE+R RI Sbjct: 21 LVSAAAGSGKTAVLVERIIKIITDK------EHPVDIDRLLIVTFTNAAAAEMRERI--- 71 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 N L L E+ DD+ Q LL Q + TI FC Sbjct: 72 -------------GNALENALKEQPDDEHLQRQLSLLHNAQ-----ITTIDSFC 107 >UniRef50_A4SC83 UvrD/REP helicase n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC83_PROVI Length = 1065 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 122/523 (23%), Positives = 211/523 (40%), Gaps = 77/523 (14%) Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQ 387 + RA E +EK +RG L F DMLS + L E EVLA R R ++DEFQ Sbjct: 300 LLRAAGETLAGYEKEKGKRGLLDFMDMLS-ISYRLFKEHPEVLAL-FRRRMECLVVDEFQ 357 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNW 447 DT P Q+ + + +P +++GD KQAI F+ AD + S + L+ NW Sbjct: 358 DTSPLQFSLVWSLRKTEPTVPAIVVGDVKQAIMGFQNAD-ERLLAEMSNKYPTSPLEGNW 416 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 RS+P ++ +N++ MF E + +++ K F+ +P +E Sbjct: 417 RSSPELMRWINQV-----GGAMFHE-GYTALEAKAK-------FRSSMEP------LEII 457 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 + ++ A +I++ + Q+ +N R +R DI+++ + Sbjct: 458 AAAEPLKEAAWASYTVNRIQELIATKQQVWDKKLN--VPRDIRGGDIAIICYKNKRLTFY 515 Query: 568 RDALTLLEI-----PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 +AL I +L +R ++ W A + + LA++ +G Sbjct: 516 AEALRKAGIRCRLEEEGWLDSR--------IVQLAWQCLAYVADPGDRHAALYLASTELG 567 Query: 623 LNALD--IETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG 680 +L + L D ++E+ +G + + R V +L +++ ++ + G Sbjct: 568 TGSLQSALTGLMEGGAVGDRILEKLEGVAERPKDRTVDAILDDIVTTLDLYGTITGWPDG 627 Query: 681 ERRLTDILHIS-----------ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL 729 D+L + E L G + WL + DS R Sbjct: 628 AEARADLLKLQDECIQFMTSSREALSSGGYYGSGIKTFLAWLKAKMEATDSAGRENNTRP 687 Query: 730 ES---DKHLVQIVTIHKSKGLEYPLVWL--------PFITNFRVQEQAFYHDRHSFEAVL 778 D+ VQ++T HKSKG E+P+V + P + N +V Y D + ++ Sbjct: 688 SPSIIDEEAVQLMTWHKSKGGEWPVVAVCGMDDGEFPRLPNTKVD----YDDFSDLDTIM 743 Query: 779 D---LNAAPESVDLAEAERLAEDL---------RLLYVALTRS 809 D + P+ + + EDL RLLYVALTR+ Sbjct: 744 DHAWVRIHPKFSSKEKNDAFVEDLKPESHENTKRLLYVALTRA 786 >UniRef50_D1B7B6 Exodeoxyribonuclease V n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7B6_THEAS Length = 1125 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 132/499 (26%), Positives = 204/499 (40%), Gaps = 90/499 (18%) Query: 347 GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI----FRRIWH 402 G+L F D++S L E + F +IDEFQDTD Q+R+ RR H Sbjct: 379 GQLSFQDLISTACGLLEGEG--------PSPFKHVLIDEFQDTDGVQFRLAEALMRRGAH 430 Query: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 L ++GD KQ+IY FR AD+ + K +L + RS P +++ VN++F Sbjct: 431 ------LFVVGDLKQSIYRFRNADLSLFDKVIRLAPVVVSLAESRRSTPQVIDLVNRIFG 484 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC 522 AF P ++ + + LR + + + P + ++ G + C Sbjct: 485 S---AFAHGIDP----STSEEYEPLRPLTEDRSDP---LPVVVTPDEGAQSKGEVLRSAC 534 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A+ +++L+ + G + + + RP R SD +VLV +R V AL L IP S Sbjct: 535 ASLAKEFLRMHREGHP-VRDREGTRPCRWSDFAVLVPTRGSYQAVSAALEDLNIPHALCS 593 Query: 583 NRD--SVFET--LEA--------QEMLWLLQAVMTP---ERENTLRSALATSMMGLNALD 627 + D S FE+ LEA + L L+ M+P +R LR + S+ Sbjct: 594 SMDFASRFESRDLEALVAALGGDRSPLGALKVAMSPLFGQRMYHLRQSEVGSLAKAGGEV 653 Query: 628 IETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI 687 I +L+ D W + L L + R R L ++ Sbjct: 654 ISSLSPIS----------DAAGASWALDHLFKPLHWLSNVRGQDRT--------RVLLNL 695 Query: 688 LHISELLQE------AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 H ELL E G Q E+ L + L + EP+ V+++T+ Sbjct: 696 RHARELLMEYEAHMGPGAQGAGEY-LTQALGNRVEEPEIPPDDA----------VRVMTV 744 Query: 742 HKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAV----LDLNAAPESVDLAEAERLAE 797 H +KGLE+P+ + + R Y AV L +AA E LA+A L E Sbjct: 745 HAAKGLEFPITAVLLKPSQRGGNGDRYRISRRLLAVPSSSLVEDAAGEEGVLAKASSLLE 804 Query: 798 D-------LRLLYVALTRS 809 + LRL YVA TR+ Sbjct: 805 ESAEAWESLRLFYVACTRA 823 >UniRef50_B4UFR2 UvrD/REP helicase n=3 Tax=Anaeromyxobacter RepID=B4UFR2_ANASK Length = 1111 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 122/478 (25%), Positives = 196/478 (41%), Gaps = 65/478 (13%) Query: 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-----------LLLIGDPKQAIYAFRGAD 426 F M+DEFQDTDP Q + + L ++GDPKQ+IY FR AD Sbjct: 383 FDHVMVDEFQDTDPLQAEVVLYLCEQGAVAGDWRDVRLVPGKLTIVGDPKQSIYRFRRAD 442 Query: 427 IFTYMKARSEV----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG 482 I Y R+ V H L ++R P +V +N F F P Sbjct: 443 IGVYAAVRAIVERGPHVVAKLKASFRCEPALVRWLNGTFDGVLGKAAGDAPVFDPEAGTV 502 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 N+ L +G A+++ + ES + ++T A+ AA +R WL G+R + Sbjct: 503 ANEPLLAGREGGAPSAVQVLPLAAESGKKPELRATEAKALAAWLR-WLIEGKRRTIVDPA 561 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF-ETLEAQEMLWLLQ 601 RP D++VLV + + L L +P Y + ++F E Q+ L L+ Sbjct: 562 TGAPRPAGYGDVAVLVTATGNLPLLFPELDRLGVP--YAARGGTLFLEDPLHQQFLLGLR 619 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A+ +R++ + A L +++D+ A + + + R R ++ Sbjct: 620 ALA--DRDDGVAQA------ALLRPPFFAVDHDDLARARAADPASTHAGVLRARAAQAVV 671 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP-DS 720 R L R + + ATA T + L +LE+ L L E D Sbjct: 672 RELRRTR-LDRSPGATARDLLERTAFGRAAALGPNGAQRLEALRELCLVLDAVAAEGLDY 730 Query: 721 NASSQQMRLESDKHL------------VQIVTIHKSKGLEYPLVWL-------------- 754 +A++ ++R D + VQI+T+H++KGLE+P+V L Sbjct: 731 DAATARLRAWVDDAVQLDPPRPVGTDAVQILTVHQAKGLEFPVVVLWDGCANLAARDVRA 790 Query: 755 PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL---AEDLRLLYVALTRS 809 PF+ + + A D +E PE ++A E+ AE LRL+YVA TR+ Sbjct: 791 PFVVDRTGEAWAVALDGLEWE-------EPEGGEVAGREKRYLDAERLRLVYVAATRA 841 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 23/149 (15%) Query: 20 LIEASAGTGKT-FTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 + +A AGTGKT +A L R+ G A L + + VTFT A ELR RIR Sbjct: 25 IADAGAGTGKTTLLVARLVERVAPEDDGPA-----LPLGRIAAVTFTRKAAGELRLRIRE 79 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + LR + TD L R L + A +D A V TIH F R+L Sbjct: 80 AL--LRALARADLTD--LRRRRLAD-------------ALSALDTAHVGTIHSFADRLLR 122 Query: 139 LNAFESGMLFEQQLIEDESLLRYQACADF 167 L E+ + ++ED++ L +A A F Sbjct: 123 LRPVEARLSPSYDIVEDDAPLVDEAFAAF 151 >UniRef50_Q03D71 ATP-dependent helicase/nuclease subunit A n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=ADDA_PEDPA Length = 1235 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 110/507 (21%), Positives = 214/507 (42%), Gaps = 75/507 (14%) Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 SE G+ + + +F ++DE+QD +P Q I + P + ++GD KQ+IYAFR Sbjct: 379 SEEGQAIRRDFQQKFNEVIVDEYQDINPLQETILTSVASPDPGN-MFMVGDVKQSIYAFR 437 Query: 424 GADIFTYM------KARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477 AD ++ K + L N+RS + + N +F+Q D E+ I Sbjct: 438 MADPSLFISKNNQFKDEEQADERIILAENFRSMRNVDDFTNLIFNQVMDT----EVGEIE 493 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST-------------MAQVCAA 524 + Q + E Q ++ + + + D ++T +AQ Sbjct: 494 YDDDAQLQFGAKYYPDEVQNNTEVMIYDDSQTDINDKEATPIISNKNDGQLQMIAQRIQK 553 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 D Q + E + R + SDI++L + ++ D IP + ++N Sbjct: 554 LFADHTQIYDKKEQKM------RDLEYSDIALLHSTGSNNLEIVDTFKKYGIP-IQVNNA 606 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL------------- 631 F+T E M+ LL+ + P ++ L + L + M+GL ++ L Sbjct: 607 QDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPMVGLKENELAFLRIGKKNGHYFEAL 666 Query: 632 ----------NNDEHAWDV------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 +N+E + +E+ D + ++ R+ ++ +L A+ + + Sbjct: 667 LYFLNEAKLDSNNEFQMQLKTKITHFLEQLDHFSKLARQSTLVDLLWAIYDETGYLDYVG 726 Query: 676 ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 G +R ++ + + + G + S L +++ D N + + +D Sbjct: 727 GMPDGPQRQNNLHALYD--RAKGYEESSFKGLFQFVRFVEKMRDKNKDLAENPVVTDVKA 784 Query: 736 VQIVTIHKSKGLEYPLVWLPFITN-FRVQEQA--FYHDRHS--------FEAVLDLNAAP 784 V+++TIH SKGLE+P+V+L + F ++ + DR + F L+++ Sbjct: 785 VKLMTIHGSKGLEFPIVFLIDAEHGFNTMDEKGRYVLDRDAGMGITLKDFIHRLEIDTVQ 844 Query: 785 ES--VDLAEAERLAEDLRLLYVALTRS 809 ++ + + + + LAE LR+LYVALTR+ Sbjct: 845 KNWIISIKKQKALAEKLRVLYVALTRA 871 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 27/118 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + ++ ++ G V+ LLVVTFTEAA +E++ RIR+ Sbjct: 22 LVSASAGSGKTSVLVERVIQKIIN--GE-------DVDRLLVVTFTEAAASEMKERIRAA 72 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I + + E +D L +++ +++ A + T+H FC ++ Sbjct: 73 I----VKKINEVSDIELQNHFSMQLN--------------KLNNANISTLHAFCMSII 112 >UniRef50_B8GFE8 UvrD/REP helicase n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GFE8_METPE Length = 1019 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 120/496 (24%), Positives = 210/496 (42%), Gaps = 72/496 (14%) Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 KR R + FDDM+ + RS+ L ++ R+RF ++DEFQDT+ Q ++ + I Sbjct: 191 KRERNLIDFDDMIHGAVTLFRSDPA--LRSSYRSRFRYILVDEFQDTNYAQLQLIKEIAG 248 Query: 403 HQPETALLLIGDPKQAIYAFRGADIFTY--MKARSEVHAHYTLDTNWRSAPGMVNSVNKL 460 L ++GD Q IY FRGA + K + H LD N+R++ +++ ++ Sbjct: 249 EN----LCVVGDDDQTIYRFRGAYLTNIRDFKQWAATHTETLLDQNYRNSGAVLSLALQV 304 Query: 461 FSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQ 520 + + G+ + F KG+ +P +CG + A+ Sbjct: 305 MA----------------GAPGRREKALFTEKGDGEPVTVA------ACG---NDAGEAE 339 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 AA+I + G + GD RP+ D +VL R++ + + + AL IP Y Sbjct: 340 YVAAEIEKLV--GTPYHSRQDGGD--RPLEYRDFTVLCRTKADGKKFQAALQRHAIPCEY 395 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTP-------ERENTLRSALATSMMGLNALDIETLNN 633 +N D + ++M+ L+ + P R + S T + +NA I+ ++ Sbjct: 396 QANVD-FMQLPVVRDMVAYLRIIDNPLMAAVPLNRVMKICSIPETVVQKINAAAIKRGDD 454 Query: 634 D--------EHAWDVVVEEFDGYRQIWR---------KRGVMPML--RALMSARNIAENL 674 D + A +V + + ++ R +R +P L +M A + + Sbjct: 455 DDDGVYETMQDAASIVPDHAEPVGEVVRMLAPFIEQKERYTLPELVHAVMMQASGLYRSA 514 Query: 675 LA-TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 L TA R H L + T + L+++L P Q+ ++ Sbjct: 515 LTDTADMVRLYLATFHEIVLEFDRTTPEATIPGLLQYLELLGAFPVEVVREQKEAGDA-- 572 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAE 793 VQI+T HKSKG E+P+V F+ + ++ + F DL + D +A Sbjct: 573 --VQILTAHKSKGKEFPVV---FVADLAREKFPLRYSPKRFRVPGDLARGLRTGDDEKAL 627 Query: 794 RLAEDLRLLYVALTRS 809 + E+ RLLYVA+TR+ Sbjct: 628 FVQEERRLLYVAMTRA 643 >UniRef50_A7IJM3 UvrD/REP helicase n=12 Tax=Alphaproteobacteria RepID=A7IJM3_XANP2 Length = 1131 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 133/521 (25%), Positives = 213/521 (40%), Gaps = 78/521 (14%) Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 KR +L FDD++ LR + + A+ RF ++DEFQDTDP Q IF R+ Sbjct: 354 KRASAQLDFDDLIFAARDMLRDH--DEVRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCG 411 Query: 403 HQPET------------ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLDT 445 E AL L+GDPKQAIY FRGAD+ Y++AR ++ T Sbjct: 412 EPVEGNDDWTRFRIRPGALFLVGDPKQAIYRFRGADVGAYVQARDAFRVQDPDSLLSIST 471 Query: 446 NWRSAPGMVNSVNKLFS---QTDDAFMFREI-PFIPVKSAGKNQALRFVFKGETQPAMKM 501 N+RS ++ VN+ F D F + PF + AL E A Sbjct: 472 NFRSCASILTFVNERFEAVLSADGQPGFTALDPFHSDRGGLCVAALDIAVADENGKASAE 531 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 + E+ +A++CA I +R A RP + DI++L + Sbjct: 532 QQRDAEA-------DAIAELCARLIESHPIIDRRSGA-------ERPCQPGDIALLAPTG 577 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 E + +AL IP + + +F E Q+++ L + + L + L ++ Sbjct: 578 AELWRYEEALERRGIPVATQAGK-GLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLV 636 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL--LATAG 679 GL D+ + W + + R + P + AR + E L L+ G Sbjct: 637 GLTEEDLLDI-----VWGLPRSKEQPDRIPRLDLSIDPAVITHSLARAVIERLQSLSRRG 691 Query: 680 GE-------RRLTDILHISELLQEAGTQLESEHAL-----------------VRWLSQHI 715 + D++ + LL E + ++E AL +R ++ + Sbjct: 692 NSTTPHELLSQAVDVMRVRPLLLER-HRGQAERALANIDLYLSLSTGYAVRGLRAFAEAM 750 Query: 716 LEPDSN-ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF--ITNFRVQEQAFYHDRH 772 S+ A + + R ++ + V + T+H +KGLE+P+V +P +T E A + Sbjct: 751 TAAWSDEARAVEGRPDAQEEAVALFTMHAAKGLEWPIV-IPVNTMTGVMAPESAVIDRQT 809 Query: 773 SFEAVLDLNAAPESVDL---AEAERL-AEDLRLLYVALTRS 809 L APE + AE E L E +RL YVA TR+ Sbjct: 810 ETFYCSVLGVAPEGYETARQAEKEELDRERIRLWYVAATRA 850 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 15/119 (12%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+EA AG+GKT +A +L PR + VTFTE A +EL R+R Sbjct: 27 LVEAGAGSGKTAVMAGRIAAML----AEGVSPRAIAA-----VTFTELAASELLSRVREF 77 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + +L + L L + D L A +DE TIHGFCQR++ Sbjct: 78 VADLSDGKIATELRVALPHGLSQAHRDN------LAAASTAIDEITCSTIHGFCQRLIK 130 >UniRef50_A0LJ26 DNA helicase/exodeoxyribonuclease V, subunit A n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ26_SYNFM Length = 1162 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 121/493 (24%), Positives = 201/493 (40%), Gaps = 91/493 (18%) Query: 382 MIDEFQDTDPQQYRIFRRI---WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS--E 436 ++DEFQDT QQ+R+ R + W L ++GDPKQ+IYAFR A++ + +A++ Sbjct: 411 LVDEFQDTSRQQWRLLRHLFEGWEAGDAKTLFVVGDPKQSIYAFRKAEVMLFTEAKNGLP 470 Query: 437 VHAH-------YTLDTNWRSAPGMVNSVNKLFSQT---DDAFMFREIPFIPVKSAGKNQA 486 + H L TN+RS P ++ N LF QT D E+PFIP ++ + Sbjct: 471 IDEHRRLPLESLVLSTNFRSQPHLIQWANGLFGQTVMRDPRPEIDEVPFIPSVASPATRP 530 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 + E ++ L G + +WL ++ Sbjct: 531 V------ECPEPPELALFNG---------WPAPAAARRREAEWLARNV--------WEET 567 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R + I VL+ +R A +A ++P V ++ + E E + + L +A++ P Sbjct: 568 RESPDTRIGVLLFARTHLATYLEAFQRWKVP-VQVAEGLKLLERPEVKYLRQLCRALVLP 626 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 + S L + + L D+ ++ + D VE+ + Q + V L + Sbjct: 627 HDDLAWASQLHSPWLVLGFDDLYAVSLETG--DSWVEKIRSFAQ--KDERVAGFWNGLEA 682 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH------ALVRWLSQHILEPDS 720 AR G L D++ I+ L G ++ S+ A R Q I E ++ Sbjct: 683 ARRHL--------GHEPLADVMEIA-WLDLGGARIVSQRWGGRGLACCRRFFQLIREAET 733 Query: 721 NASSQQMRL--------------ESDKHLVQIVTIHKSKGLEYPLVWLPF-----ITNFR 761 + + +R E+ + V ++T+H++KGLE+ V+LPF + R Sbjct: 734 HEPVETLRRLEELLENAYEPVDPETARSGVSVMTVHRAKGLEFDSVYLPFLDWNPVVRQR 793 Query: 762 VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL-------------AEDLRLLYVALTR 808 +Q + +R L L AA E + L E RL YVA+TR Sbjct: 794 SSQQPYLLERVPGSGELFLLAAHPDRLKGEPDPLFSWLARLQADRAWGEAKRLFYVAVTR 853 Query: 809 SVWHCSL-GVAPL 820 S L GV PL Sbjct: 854 SRTRLHLSGVVPL 866 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 17/142 (11%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 A +LDP G +EA AG+GKTF + A +LRLL G P +++L +TF Sbjct: 18 ARSLDP-----SGSFHLEAPAGSGKTFLLTARFLRLL----GLVEHP-----QQILAMTF 63 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 T A +E+R R+ + + E + + + QA + LL+ + Sbjct: 64 TNKAASEMRERVCRYLQRAKRGERPEAEPDGELLDAAAKALARHQAHEPLLMGGELLR-- 121 Query: 125 AVFTIHGFCQRMLNLNAFESGM 146 + T H FC + E+G+ Sbjct: 122 -IQTFHSFCHALAAQAPLEAGI 142 >UniRef50_Q2GL78 ATP-dependent DNA helicase, UvrD/Rep family n=6 Tax=Anaplasma RepID=Q2GL78_ANAPZ Length = 788 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 161/745 (21%), Positives = 323/745 (43%), Gaps = 109/745 (14%) Query: 126 VFTIHGFCQRMLNLNAFESGML--FE-QQLIEDESLLRYQAC--ADFWRRHCYPLPREIA 180 V T+HGFC+ +++ E+G+ FE ++L E + Y+ +D+ H +E+A Sbjct: 41 VQTVHGFCKSLISSFPSEAGISANFEVRELSESYPKIFYKLLHESDYIAEHL----KEVA 96 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + E+ L + + ++ ++ P P D + H I Sbjct: 97 CELKES-----TLFDLLYKIMKKPHIDLEVPQPTDLHVKPDHLLCPEEI----------- 140 Query: 241 GELDALIESSGIDRRKFNRSNQA--KWIDKISAWAEEETNSYQLPESLEK------FSQR 292 +DAL G+ +K + ++ + K EE ++ SLEK S++ Sbjct: 141 --IDAL-NCGGLRDKKISTKLRSWNNLVHKTHKKIEEYLKTFICIASLEKKDISSIASKQ 197 Query: 293 FLEDRTKAGGE--TPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELG 350 L+ GG + L E +Q + +S R I + + +K+ L Sbjct: 198 VLQQCPTVGGAIVNEQEKLLEFAEQYYSARISKRTFHIMQLVRHGIRIYEYDKKNAKYLN 257 Query: 351 FDDMLSRLDSALRSE--SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI--------FRRI 400 +DD+++ L L S+ + + ++ ++ ++DE QD +Q+ I F + Sbjct: 258 YDDIIN-LSLKLISDPTHKDFVLFSLDSQINHILVDESQDNSLEQWHIVAELCNEFFTGL 316 Query: 401 WHHQPETALLLIGDPKQAIYAFRGA--DIFTYMKA----RSEVHAHYTLDTNWRSAPGMV 454 + + L ++GD KQ+IY F+ A D F +M +S L ++RS P ++ Sbjct: 317 SSNTNQRTLFVVGDVKQSIYGFQNARPDYFHFMHKYFAQKSTNPVTIQLSDSFRSTPPIL 376 Query: 455 NSVNKLFSQTDD--AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK--------MWLM 504 V+K+F+ + +F +EI V + + +V E P ++ W + Sbjct: 377 ALVDKVFNTLREQVSFQSQEI----VHNTYRANEYGYV---EIWPLLRSTRRKKPYAWDL 429 Query: 505 EG-ESCG-VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 E + CG D+ +AQ + I W++ ++ +A RPV ASDI +LVR R Sbjct: 430 ESIKECGENADHSLLLAQTISQTISSWIKEERKLQA------KNRPVEASDILILVRHR- 482 Query: 563 EAAQVRDALTLLEIPSVYLSNRD--SVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 + V + L+ ++ ++ RD ++ + + Q+++ L + ++ PE + +L + L + + Sbjct: 483 -SVFVDQMIASLKQENIPVTGRDRCNIMDYVVIQDLVNLGEFLLLPENDISLATLLKSPI 541 Query: 621 MGL-NALDIETLNNDEHA---WD-----VVVEEFDGYRQ----IWRKRGVMPMLRALMSA 667 +++ E +++ W+ ++E Y + I + R + + ++S Sbjct: 542 FRYTDSMLFEIVSSSSEKCSLWNKLQKFTTMQETVKYLKLLISISQNRSPLDLYFFILSQ 601 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 E + G I+ L+ L ++W+ S + Sbjct: 602 H--KEQFIKCLGQTSVEIIEEFINLLIAFQSNNLNLLEYFIQWIK-------STNPVTKS 652 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF-RVQEQAFYHDRHS-FEAVLDLNAAPE 785 + K+LV+I+T+H +KG++ P+V+LP T+ + Q + D+++ D N+ + Sbjct: 653 DMSIAKNLVRIMTVHSAKGMQAPIVFLPDTTSVPKCDLQVVFDDKNTPLWCASDTNSYCK 712 Query: 786 SVDLAEA-ERLAEDLRLLYVALTRS 809 ++ L ++ E E LRLLYVA+TR+ Sbjct: 713 NLKLRKSQEEYNEYLRLLYVAMTRA 737 >UniRef50_D1PLS3 ATP-dependent deoxyribonuclease subunit A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS3_9FIRM Length = 1160 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 116/476 (24%), Positives = 190/476 (39%), Gaps = 59/476 (12%) Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFT 429 L + R+ ++DE+QDT+ Q I+ + + + L +GD KQ+IY FR AD Sbjct: 388 LCHTVSERYSAVLVDEYQDTNALQDAIYFALASPEADN-LFFVGDIKQSIYRFRQADPAV 446 Query: 430 YMKAR---------SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 ++ + + A LD N+RSAP ++ +N LFS F E + + Sbjct: 447 FLGKQQCWQPYPQPAPQPATLALDANFRSAPQVIEGINYLFS-----VFFSE--GLGGVT 499 Query: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 G Q L + P + C V A AA I + + + Sbjct: 500 YGDGQRLVVGKPDVSYPGL---------CEVDVLDGADAAGDAAGIAQRIAGMMQEGFAV 550 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 + RP R D +L+R R + + +AL EIP V+ + + + LL Sbjct: 551 RDKTGTRPCRYDDFCILLRGRADFSIYEEALRAAEIP-VFADTAADLLDAPHIRPFAALL 609 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLN--------------NDEHAWDVVVEEFD 646 + + P ++ L + L + M D+ +L + + E Sbjct: 610 RVIDNPAQDIPLAAVLLSPMFPYTPDDLVSLRRACPQGSLYGAVLYGGQPRFAAFTESLA 669 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHA 706 YR++ R V +L L++ + A G R D+L AG S A Sbjct: 670 EYRRLARTLPVDRLLEELLARTGYLAAVGALPDGARCREDLLTFVTWAGGAGRAGLS--A 727 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA 766 LVR + N S ++ V I+T+H+SKGLE+P+V++ + Q A Sbjct: 728 LVRAMDSAAANGGLNQSGGG---QTRPGCVSIMTVHRSKGLEFPVVFVANTAHQFNQSDA 784 Query: 767 ----FYHDRHSFEAVLDLNAAPESVD------LAEA---ERLAEDLRLLYVALTRS 809 H R +L + + LA+A E L+E++R+LYVALTR+ Sbjct: 785 IRPVLTHSRLGVGVMLRAGKSAKRYKTLPYAALAQAIRTETLSEEMRVLYVALTRA 840 >UniRef50_C6P6T0 UvrD/REP helicase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T0_9PROT Length = 1134 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 39/332 (11%) Query: 343 KRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 K ++ ++ F D+ +L L+ SE E + + +R+ ++DEFQDT+P Q++I R W Sbjct: 347 KAQKQQMDFSDLEWQLCRLLQQSEHAETMQYKLDSRYRHVLLDEFQDTNPLQWQILR-AW 405 Query: 402 HH-----QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNW-----RSAP 451 + + ++GDPKQ+IY FR AD + AR + +++ T R++ Sbjct: 406 FDASVAVDSQPTVFVVGDPKQSIYRFRRADARLFGVAREYLQEYFSAQTQGNSLTRRNSQ 465 Query: 452 GMVNSVNKLFSQTDDAFMF-------REIP----FIPVKSAGKNQALRFVFKGETQPAMK 500 +V++VN +F + D F F +E+P +P+ A + + Sbjct: 466 PVVDAVNAVFHEQPDGFEFVEHQTHQKELPGYVLVLPLAVA------EVIPSPNGGGDIN 519 Query: 501 MWLMEGESCGVGDYQST--------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRAS 552 EGE + D +T Q+ AAQ + LQ R ++ G + R Sbjct: 520 GAGGEGEELRLRDPLTTPRDEAEEGARQIEAAQFAEMLQTIARDWSVNEGGQERRATYG- 578 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 DI VLVRSR +AL IP + S R + +TLEA+++ LL ++TP + L Sbjct: 579 DIMVLVRSRTHLTVYEEALRARHIPFIS-SRRGGLLDTLEAEDVQALLMFLITPFADLAL 637 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 L T + + D+ L + + E Sbjct: 638 AQVLRTPIFACSDADLMRLAQNSAEYGATSSE 669 >UniRef50_C1XFM8 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFM8_MEIRU Length = 833 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 130/508 (25%), Positives = 212/508 (41%), Gaps = 62/508 (12%) Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEF 386 ++ A +R + R KR G L F D+ ALR+ + A R R+ ++DE Sbjct: 294 LLAEAFQGVRNFLQRRKREDGVLNFADLEV---HALRALDHPPVLEAYRARWRAFLVDEH 350 Query: 387 QDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD--IFT----YMKARSEVHAH 440 QDT+P Q I R++ P + ++GD KQAIY FR AD +FT +K R A Sbjct: 351 QDTNPIQGEILERLFGEAP---VAVVGDRKQAIYGFRYADHRVFTGFVEEVKTRPRGRA- 406 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 L+ N+R+ ++ +V++L P P ++ + R VF G K Sbjct: 407 VRLEANYRTQAPLLEAVDRLAEGFLGPLHQPLQPTRPAWNSPEPCLWRLVFSGSLPSKDK 466 Query: 501 MWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 L E E A+ A ++R L+ G L +G P+R +I++L R+ Sbjct: 467 ERLREAE-----------ARRVAQEVRTLLEKG------LPDG----PLRPGEIAILART 505 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 AL IP+V + S+ ET EA++ + LL + P + L + L + Sbjct: 506 WNTLEPFTRALEAEGIPAVS-AGGGSLLETPEARDGMALLAFLADPRDDLALLTLLRSPY 564 Query: 621 MGLNALDIETLNNDEHA---WDVVVEEFDG-------YRQIWRKRGVMPMLRALMSARNI 670 + + L A W+ + + DG ++ +KR ++P L+ ++ Sbjct: 565 FAVPDAVLHRLAEGRQAASWWEAL--QADGPEEPRQMLEELRQKRSLLPSF--LLQEADL 620 Query: 671 AENLLAT----AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 A A G ERRL D EL++ + E +V L Sbjct: 621 ATGYTAVLAHLPGPERRLADYGAFLELVRGLEARGEGLWGVVDRLRTLARRRLELPRPPL 680 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--FYHDRHSFEAVLDLNAAP 784 LE+ VQ++++H +KGLE+ +V+L + H LD Sbjct: 681 GGLEA----VQLLSVHAAKGLEWRVVFLVGLDRRPAAPSPSLLLHPERGLGIRLDKEPGG 736 Query: 785 ESVDLAEAE---RLAEDLRLLYVALTRS 809 +L + ++ E+ RLLYVALTR+ Sbjct: 737 LYAELLKESLRGQVEEEARLLYVALTRA 764 >UniRef50_C9XK50 ATP-dependent DNA helicase n=5 Tax=Clostridium RepID=C9XK50_CLODC Length = 762 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 120/510 (23%), Positives = 214/510 (41%), Gaps = 116/510 (22%) Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-H 402 +R L FDD++ + ++ + EVLA R+RF M+DE+QDT QY + + + Sbjct: 188 KRNSALDFDDLILKTVELFKA-NDEVLAY-YRSRFRYIMVDEYQDTSKAQYELIKLLARE 245 Query: 403 HQPETALLLIGDPKQAIYAFRGAD---IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 HQ + ++GD Q+IY +RGAD I + K VH L+ N+RS ++++ NK Sbjct: 246 HQN---ICVVGDDDQSIYGWRGADIRNILEFEKDYDNVHV-VKLEQNYRSTQVILDAANK 301 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW--LMEGESCGVGDYQST 517 + S + + K+W EGE + Q T Sbjct: 302 VISNNIE-----------------------------RKRKKLWSEKKEGELIKI---QLT 329 Query: 518 MAQVCAAQ-IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 +++ A I D + R E RP + D +VL R+ +A V DAL +I Sbjct: 330 GSEIEEADFIADSIAQIARKE--------NRPYK--DFAVLYRANAQARPVEDALNRSQI 379 Query: 577 P-SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN-- 633 P ++Y + +E E +++L L+ + P+ + +++ + G+ IE + + Sbjct: 380 PYNIYGGTK--FYERKEIKDLLAYLRVIQNPQDDISIKRIINVPRRGIGLRTIEKIEDRA 437 Query: 634 ---DEHAWDVVVE-------------EFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 E + V+++ G+ I G + ++ + + E +L T Sbjct: 438 NLKQESIYSVLIDIETNSDISTKARASISGFVDII---GTLRTIKEVYPVSKLIEKVLDT 494 Query: 678 AGGERRLTDILHISEL-LQEAGTQLESEHALVRWLSQHILEPDSN--------------- 721 G L +I + +E L G + + +R LE +S+ Sbjct: 495 TGYMDELVEIRNKNEKDLTGKGEEAQDRIDNLREFISIALEFESSNDDTYENKDLETFLT 554 Query: 722 --ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD 779 A + + E D V ++TIH SKGLE+P+V+L + E + Sbjct: 555 SIALTSESNDEEDNDRVSLMTIHTSKGLEFPVVFLTGME----------------EGLFP 598 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRS 809 ++ A +S+ ++ E E+ RL YV +TR+ Sbjct: 599 ISRAIKSMSDSQIE---EERRLCYVGITRA 625 >UniRef50_A3SZB5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SZB5_9RHOB Length = 1068 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 145/594 (24%), Positives = 235/594 (39%), Gaps = 102/594 (17%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G ++ A AG GKT I + L RP E +L VTFTEAA ELR R Sbjct: 10 RGLVIVPAGAGAGKTHRI-----KTQLSDWVKRKIVRP---ERILAVTFTEAAAGELRER 61 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR+ + A L+ ++ A V TIHG R Sbjct: 62 IRAGL-----------------------------LADGLVTEAMAVERAYVSTIHGLGLR 92 Query: 136 MLNLNAFESG--------------MLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 +L +A +G +L Q L +SL +A + +R Y + + Sbjct: 93 LLTEHALAAGASLQPRHLGDAERELLIRQALAHAKSLDPIKAEPERFR---YQPNWQKGE 149 Query: 182 VVFETWKGPQALLRDINRYL--QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 V ++ +G + D+ R L +G P + AP L + +++A + A Sbjct: 150 TVEDSLRGRVLSMIDLLRGLGDKGRDPGLIAPAL--TRLDEIYGKVIADPTAARDALAKA 207 Query: 240 VGELDALIESSGIDR------RKFNRSNQA--KWIDKISAWAEEETNSYQLPESLEKFSQ 291 V + G+D R+ +N A + +++ A + + + +Q SL + Sbjct: 208 VATMLTAFPVGGMDGVTAKGPRETLENNLALFRRVERDPAMLDRDWSLWQSLRSLFTSNS 267 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL-----VITRALAEIRETVAREKRRR 346 R +T G + + +A + L + P + D + E+ E K+ Sbjct: 268 RT---KTPEGYDDLALAIMQAAEVLPSHPGPLADAKLHFQCLIACAQEVMEAYETRKKAL 324 Query: 347 GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE 406 G + + DM++ + LR++ + A+ +IDEFQDT+P Q+ + ++ P Sbjct: 325 GLIDYADMIAGAERLLRTDP--AVRQAVLDEIDCVIIDEFQDTNPVQFALLWQLGARAPR 382 Query: 407 TALLLIGDPKQAIYAFRGADI-FTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD 465 T LL+GD KQ+I F+GAD + A + A LD NWRS P +++ VN + + Sbjct: 383 T--LLVGDVKQSIMGFQGADPRLSQALAAANPDAKQPLDRNWRSTPAVMDFVNAMGAGL- 439 Query: 466 DAFMFREIPFIPVKSAGKNQALRF--VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCA 523 F P P + AL + KG GV Y V A Sbjct: 440 --FGAGYNPLAPTRDPVSGPALEVLNIVKGR---------------GVRKYSKPQEHV-A 481 Query: 524 AQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 +I LQ G+ + R VR SDI++LV AA+ + L +P Sbjct: 482 ERIAQILQVGE--TITDRHSKAPRNVRPSDIALLVCRHATAARYAEELRARGVP 533 >UniRef50_C7RGF9 UvrD/REP helicase n=3 Tax=Anaerococcus RepID=C7RGF9_ANAPD Length = 1121 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 119/511 (23%), Positives = 219/511 (42%), Gaps = 82/511 (16%) Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 R K + L F DM + + E +R + DE+QD++ Q I ++ Sbjct: 341 RLKEEKAYLDFSDMEHKFIDLIDIEEAR---NKLRETYKYIFFDEYQDSNEIQNYIIEKL 397 Query: 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKA-----RSEVHAHYTLDTNWRSAPGMVN 455 + E L +GD KQ+IY FR A+ +++ + + L+ N+RS +++ Sbjct: 398 ---KGEDNLFFVGDVKQSIYGFRRAEPKLFLEKLEAYDKDDKSVRIDLNKNFRSQKDVLD 454 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 N +F D M +E I + G R F Q A Y+ Sbjct: 455 FDNFIF----DRLMTKEESDIDYRDGGH----RLNFNKNEQSA---------------YE 491 Query: 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 +V ++IR+ + E + G D R DI++L+RS ++ +A E Sbjct: 492 RANIKVIDSKIREEDYLAKLIEEIRAMGYDYR-----DIAILLRSGGKSYVYEEAFKKAE 546 Query: 576 IPSVYLSNRDSV-FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET--LN 632 IP + ++ V F +E + LL+ + P+ + TL S L + + + D+ L+ Sbjct: 547 IP--FFNDISKVSFRAVEVTFFINLLKYLANPKDDLTLLSLLRSEIFDFDEDDLVEIRLS 604 Query: 633 NDEHAWDVVVEEFDGYRQIWRK-------RGVMPMLRALMSARNIA----------ENLL 675 +D +++ +E+D +I K + ++ L+S A E LL Sbjct: 605 SDSYSFTKAFDEYDKDEEIVEKINDFKTIFADLTYVKNLLSLYEFANYVFEKTGFYEYLL 664 Query: 676 ATAGGERRLTDILHISELLQEAGTQLESEHALVRWL----SQHILEPDSNASSQQMRLES 731 A R+ ++ +++ E +++ L +L S I + D+ +++++ Sbjct: 665 ARDRASDRINNVESFIDIMDEYDRT--NDNGLFGFLEFVDSLSINQSDNIQTTRELSEAE 722 Query: 732 DKHLVQIVTIHKSKGLEYPLVWL----PFITNFRVQEQAFYHDR-------HSFEAVLDL 780 D LV+I+TIHKSKGLE+P+V L N ++E + D +E L Sbjct: 723 D--LVRIMTIHKSKGLEFPVVILADCGKRFNNKHLREPIVFDDDLGIGINLSDYENKLRF 780 Query: 781 NAAPESV--DLAEAERLAEDLRLLYVALTRS 809 ++ +++ D E E++R+LYVA+TR+ Sbjct: 781 SSLRKNLINDKITKENKKEEMRILYVAMTRA 811 >UniRef50_Q3A3V6 ATP-dependent exoDNase (Exonuclease V) beta subunit n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A3V6_PELCD Length = 1118 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 107/412 (25%), Positives = 172/412 (41%), Gaps = 75/412 (18%) Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRI---WHHQPETALLLIGDPKQAIYAFRGADIFTYMK 432 +R ++DEFQDT Q+ + +++ W +L L+GDP Q+IY FR A++ Y++ Sbjct: 412 SRIRHILVDEFQDTSWGQFLLLKKLTAGWQQGDGRSLFLVGDPMQSIYRFREAEVGLYLQ 471 Query: 433 ARSE------VHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 AR + A Y L TN+RS G+V+ VN++F + F RE + + + A Sbjct: 472 ARHHGIHQLRLEALY-LSTNFRSQAGVVDWVNRVFPEL---FPPREDEALGSVTYAASVA 527 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 R V G PA+ M G + A Q+ D ++ +R + Sbjct: 528 ARDVLDG---PAVTCHPMAGRD----------DRAEALQVVDLVRQARRADP-------- 566 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 ++VLVR+R +Q+ A +P D++ + AQ++L L +A++ P Sbjct: 567 ----EGTVAVLVRARTHLSQILTAFREAGLP-FRAQEIDALADRSVAQDLLALTRALLHP 621 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF------------DGYRQIWRK 654 + L GL+ D+ L + D + E DG ++ R Sbjct: 622 GDRVAWLAVLRAPWCGLSLADLHALCGETP--DATLPELLRQPQRLMRMSADGRMRVERC 679 Query: 655 RGVMPML---RALMSARNIAENLLATAGGERRLTD--------ILHISELLQEAGTQLES 703 GV+ R +S R + E GG L D + + + L G L Sbjct: 680 LGVLNQSLSQRGRVSLRMLVEGAWLALGGPGCLDDAGLVDAEALFGLLDQLDYGGDMLPM 739 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 E L LS+ PD A +Q++TIHK+KGLE+ V LP Sbjct: 740 E-GLADKLSKLFAAPDPAADDT----------LQVMTIHKAKGLEFDTVILP 780 >UniRef50_D1BPN9 Recombination helicase AddA n=3 Tax=Veillonella RepID=D1BPN9_VEIPT Length = 1288 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 147/591 (24%), Positives = 252/591 (42%), Gaps = 92/591 (15%) Query: 343 KRRRGELGFDDMLSRLDSALRSESG-------EVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 K+ +G + F D L L AL E G +A ++ F M+DE+QDT+ Q Sbjct: 367 KQEQGIMDFSD-LEHLCLALLVEPGTEDDPQPSEVAKELQDTFKEIMVDEYQDTNGVQET 425 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK------ARSEVHAHYTLDTNWRS 449 I I +GD KQAIY+FR AD +M+ V L N+RS Sbjct: 426 IINLISRVDNR---FYVGDVKQAIYSFRMADSSLFMEKYNTYGGTDAVERRIDLAKNFRS 482 Query: 450 APGMVNSVNKLFSQ--TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 ++ + N LF Q T+DA E+ + +S + + V + +++ L++ Sbjct: 483 DANILAATNFLFYQIMTEDA---AELNYTEAESLIPGRIVEDVPEDWVGGDVELQLLDVS 539 Query: 508 SCGVGDYQSTMAQ------------VCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDI 554 +G +S + +I++ A ++ + N D R + D Sbjct: 540 KDTLGASESDEDEGDDPENNERELDFIIQKIKEIHAAKKQ----VQNPDGTFRQIEWRDF 595 Query: 555 SVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 ++L RS + +A+ IP+V ++ RD FE E Q +L LL + PE++ + Sbjct: 596 AILRRSLAGWGTRAVEAMRQAGIPAV-VNERDGYFEAQEIQLLLALLSIIDNPEQDLPMA 654 Query: 614 SALATSMMGLNALDIETLNND-------------EHAWDVVVEEFDGYRQIWR----KRG 656 + L + ++GL+A ++ L E A D + F G+ + WR + G Sbjct: 655 AVLHSGLVGLDANELGALRLSGEGSLWSLMPAYAEVAQDERLLAFIGHMERWRTLSRRHG 714 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHIL 716 V +L + +++ + A G R ++L + + + G + L R+L Sbjct: 715 VTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYD--RAKGYEASGFRGLFRFLRFVES 772 Query: 717 EPDSNASSQQMRLESD-KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFE 775 DSN + S+ ++V+++TIHKSKGLE+P+V+L VQ++ D S E Sbjct: 773 LRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFLS-----GVQKRFNMMDLRS-E 826 Query: 776 AVLDLNAA-------PE------------SVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 ++D NA P+ D+ EA AE+ R+LYVALTR+ L Sbjct: 827 LLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVALTRA--RDKLF 884 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAW 867 + ++ + KG S +G L++ + L T I + + W Sbjct: 885 MTGFIKGFKNSKGVL----STMGELIKNAASVETQQLPTDIITQANTYLDW 931 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 30/118 (25%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT A L R++ L PL+V+EL+VVTFT+AA E+ RI Sbjct: 27 LVAAAAGSGKT---AVLVERIITRLKD---MDNPLSVQELMVVTFTKAAAQEMSARIGLA 80 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD---EAAVFTIHGFCQ 134 + + + T D + ERL ERQ++ A + T+H FCQ Sbjct: 81 LAK----AMESTEDAAMQERL-----------------ERQLNLLPSAHISTLHSFCQ 117 >UniRef50_C4V2E5 ATP-dependent deoxyribonuclease subunit A n=2 Tax=Selenomonas RepID=C4V2E5_9FIRM Length = 1260 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 145/542 (26%), Positives = 232/542 (42%), Gaps = 97/542 (17%) Query: 342 EKRRRGELGFDDMLSR-----------LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 EK R L F D+ R L L S +A +R + M+DE+QDT+ Sbjct: 373 EKLERSLLDFSDLEHRALALLCRHPEQLQDDLNSVDPTDIAEELRAYYAAIMVDEYQDTN 432 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD--IF--TYMKARSEVHAH--YTLD 444 Q I R+I H ++GD KQ+IY FR AD +F TY R + A T+ Sbjct: 433 GLQEGILRQIAHDDNR---FIVGDVKQSIYRFRLADPSLFQHTYRAYRQDSSAGELITMS 489 Query: 445 TNWRSAPGMVNSVNKLFSQ--TDDAFMFREIPFIPVKSAGKNQALRF----VFKGETQPA 498 N+RS ++ +N++FSQ T+ A EI + +SA N F K P Sbjct: 490 ENFRSRAEVLQPINEIFSQIMTESAV---EIAY--DQSARLNPGRTFDDDPAGKSLASP- 543 Query: 499 MKMWLMEGESCGVGDYQ--------STMAQVCAAQIRDWLQAG---QRGEALLMNGDDAR 547 +++ L++ + + + A +I++ + AG Q G+AL Sbjct: 544 LEIDLLDADYSAEEADDEGEELAAFAVESHYIARRIKELVDAGYTVQSGKAL-------- 595 Query: 548 PVRASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R SDI VL+R +E A + DAL IPS Y + FE E + ML LL + Sbjct: 596 --RWSDIVVLLRGAKERAVILMDALREAGIPS-YADDTAGYFEASEIRMMLSLLAVLDNA 652 Query: 607 ERENTLRSALATSMMGLNALDIETL----------------NNDEHAWDVVVEEFDGYRQ 650 ++ L + L + M+G++ ++ L + +E V + + + Sbjct: 653 RQDTPLTAVLTSPMIGMSMEELALLRIHTPVGSIYDALKGADAEEVPPAVRNKAKEALQT 712 Query: 651 I--WRKRGVM----PMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT-QLES 703 I WR+ ++ +L L + + A G R + + L+ AG + + Sbjct: 713 IRCWRREALLHSVPELLWHLYRTSGYYDYVGALPDGILRQAN---LRMLIDRAGDFERTN 769 Query: 704 EHALVRWLS-QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN-FR 761 E L R+L L+ S S L + +V+I+TIH+SKGLE+P+V+L I F Sbjct: 770 ERGLFRFLRYMDALQRRSTDLSAARTLGESEDVVRIMTIHRSKGLEFPVVFLANIAGAFN 829 Query: 762 VQE---QAFYHDRHSFEAVLDLNA----------APESV-DLAEAERLAEDLRLLYVALT 807 Q+ YH + N SV ++ E +AE++R+LYVA+T Sbjct: 830 TQDISGDVLYHAHAGIGVRVYENTEIGRQKYDTLGRRSVKEVIRRETIAEEMRILYVAMT 889 Query: 808 RS 809 R+ Sbjct: 890 RA 891 >UniRef50_C5RAZ6 ATP-dependent deoxyribonuclease, subunit A n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAZ6_WEIPA Length = 1269 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 137/544 (25%), Positives = 223/544 (40%), Gaps = 95/544 (17%) Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 EK RR L F+D+ AL+ S E + A ++ R+ M+DE+QDT+ Q I I Sbjct: 370 EKLRRKVLDFNDLEH---FALQIVSQEKVKAELQERYTEIMVDEYQDTNQLQEAILHEIT 426 Query: 402 HHQPETALLLIGDPKQAIYAFRGAD-------IFTY-MKARSEVHAHYTLDTNWRSAPGM 453 L +GD KQ+IY FR AD + TY SEV TL N+RS P + Sbjct: 427 SGD---NLFQVGDIKQSIYKFRQADPTLFAGKLATYPSDTISEV---ITLQENFRSQPNV 480 Query: 454 VNSVNKLFSQ-----------TDDAFMFREIPFIPVKSAGKNQALRFVFKG--ETQPAMK 500 N +N +F+Q T +A + + P + K + L ++ + PA Sbjct: 481 TNFINYIFAQAMSRSLGDIEYTGEAELVAGADYYPEELPKKAELLLYLDDANQDESPADA 540 Query: 501 MWLMEGESCGV-GDYQSTMAQV--CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 E ++ Y Q+ A +I++ +Q+ + E RPV DI++L Sbjct: 541 EVDAEADTLASDAPYTKATGQIRLTALKIQELMQS--KFEIFDRQAQKKRPVNYGDITIL 598 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 V ++ + V D + IP + + ++ F+T E ++ LQ + P ++ L + L Sbjct: 599 VPTKGQNLDVLDVFREMNIP-IMIDGTENYFQTTEISVIMSFLQVIDNPHQDIPLVAVLR 657 Query: 618 TSM--MGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 + + +G N L + E + V+ +I + P L + + + + L Sbjct: 658 SPLYDIGENGLALIRAQTPEEDFYTAVKNLANDDEIDTIGDISPAL--VKNTQTQVQRFL 715 Query: 676 ATAGGERRLTDILHISELL---------------QEAGTQLESE-HALVR---------- 709 A R L I LL +G Q ++ HAL Sbjct: 716 ADLAVFRDLAVQNQIVTLLWAIYNRTGWLDYVGGLPSGAQRQANLHALYDRASAYQKSSF 775 Query: 710 -WLSQHILEPDSNASSQQMRLESDKHLVQ----IVTIHKSKGLEYPLVWLPFITNFRVQE 764 L Q I S + E+D ++ Q ++TIH SKGLE+P+V+L T + + Sbjct: 776 VGLYQFINYVTQLQSHDKDLGEADANVAQDSVSLMTIHHSKGLEFPIVFLLNATRTMISQ 835 Query: 765 QAFYHDRHSFEAVLDLNAA----------------PESVDLAEAER---LAEDLRLLYVA 805 + +LD A P+ +A+ +R AE LR+LYVA Sbjct: 836 R-----ETQGSIILDAQAGGGMNYVDLQHHLKLITPQHEYIAQVKRQNAYAEQLRVLYVA 890 Query: 806 LTRS 809 LTR+ Sbjct: 891 LTRA 894 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 30/119 (25%) Query: 20 LIEASAGTGKTFTIAALYL-RLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ ASAG+GKT + + RLL G V E L+VTFTEAA +E++ R+ Sbjct: 19 LVSASAGSGKTRVLVERVMQRLLAGEN----------VNEFLIVTFTEAAASEMKERLEG 68 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I IA + E Q LL R ++ A + T+H F R++ Sbjct: 69 AIRSELIASVGEQR-------------------QHLLKQLRLLNIANISTLHAFALRLI 108 >UniRef50_UPI0001C314BB UvrD/REP helicase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314BB Length = 1184 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 91/471 (19%) Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 A K+R + F+D+ R + LR E L A RF M+DEFQDT+P Q + R Sbjct: 303 AEAKQRASAVDFEDLELRANRLLREH--EELRARYAERFVHVMVDEFQDTNPLQLELLER 360 Query: 400 IWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH---YTLDTNWRSAPGMVNS 456 I + L +GD Q+IY FR AD+ + + R + H +L TN+RS ++ + Sbjct: 361 IAGER----LFTVGDELQSIYGFRHADVELFRRRRKALAEHGAAASLATNFRSHAEILET 416 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKM--------W-----L 503 +N F A F E F P+ + + +A G P +++ W L Sbjct: 417 LNVAF-----APRFGE-SFTPLVAGREERADALPVAG---PRVELLVVDVRADWANAGLL 467 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 EG + ++ A+ AA++R+ L G+ RA D+ +L+R+ + Sbjct: 468 PEGMAAPAPLWRVAEARALAARVRELLDGGR---------------RAGDVVLLLRATGD 512 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A ALT L +P+ + R + + ++++ L + P L+S LA+ ++GL Sbjct: 513 LAVYERALTDLAVPTYVIGGR-GYWAQQQVRDLVAYLGVLANPRDGVALQSLLASPLVGL 571 Query: 624 NALDIETLNNDEHA----------WDVVVE--------EFDGYRQIWRKRGVMPMLRALM 665 ++ + + A W V+ E D ++ R +P RA Sbjct: 572 SSDGLVQVVAAARASRREGEPPDPWWVLTEGRELLARLAPDDAERVEELRAWLPAERATA 631 Query: 666 SARNIAE-------------NLLATAGGERRLTDILHISELLQEAGTQLESEHAL-VRWL 711 ++ LL G RRL ++ + L +E E+E +R Sbjct: 632 PRHSLESLLDRVLDQTGYDVELLRLPSGARRLANVRKLMRLARE----FEAEEGRDLRGF 687 Query: 712 SQHILEPDSN-ASSQQMRLESDKHL-------VQIVTIHKSKGLEYPLVWL 754 ++E SS++ ES+ + V+++TIH++KGLE+P+V + Sbjct: 688 VDMVMELGGGLESSREQDRESEAPVEGEALDAVRLMTIHRAKGLEFPVVCV 738 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 37/130 (28%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT +A ++R +L G + V +L +TFTE A +EL+ R+ Sbjct: 19 GGLLLTANAGSGKTSVMAERFVRAVLHEG--------VEVTRILAITFTEKAASELKERV 70 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 R +E L E +A W V TIHGFC R+ Sbjct: 71 RRR-----------------FEALGEPERARATEGAW------------VSTIHGFCARL 101 Query: 137 LNLNAFESGM 146 L + +G+ Sbjct: 102 LRTHPLAAGI 111 >UniRef50_B3WEJ1 ATP-dependent helicase/nuclease subunit A n=8 Tax=Lactobacillus RepID=ADDA_LACCB Length = 1234 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 124/522 (23%), Positives = 223/522 (42%), Gaps = 99/522 (18%) Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRG 424 ++G +A R F M+DE+QD P Q + + P ++GD KQ+IY FR Sbjct: 382 QTGAPIADNYRASFDEVMVDEYQDISPLQEALLAAVSTTTPGDR-FMVGDVKQSIYGFRL 440 Query: 425 AD--IF-----TYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 AD +F T+ A ++ A L N+RS ++ N +FSQ D P Sbjct: 441 ADPQLFIHKYQTFQDAPTDPAAPERIILAENFRSTKNVLAFTNLIFSQIMD-------PE 493 Query: 476 IPVKSAGKNQALRF--VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDW---- 529 + S ALR+ + G+ PA+K+ L S D S+ A D Sbjct: 494 VGDLSYDNAAALRYGALDYGDAHPAVKVLLY---SKATSDEDSSDASELPGDADDNEPVD 550 Query: 530 LQAGQRGEAL-----LMNGDDA----------RPVRASDISVLVRSRQEAAQVRDALTLL 574 + GQ L L+N DA R + DI++L R + + ++ Sbjct: 551 IATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAAA 610 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-- 632 +P +++++ + F+T E ML LL+ + +++ L + L + ++GL+A + + Sbjct: 611 GVP-LFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669 Query: 633 -NDEHAWDVVV-----------------------EEFDGYRQIWRKRGVMPMLRALMSAR 668 +D V + +R + R+ ++ +L A+ Sbjct: 670 AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729 Query: 669 NIAENLLATAGGERRLTDILHISELLQ--EAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 + + T GG +R ++ + + + EAG + A + +++ +++ + Sbjct: 730 GFLDYVGGTPGGSQRQANLQALIDRARTYEAGG-FKGLFAFIHFIT--LMQKQDQDLAMP 786 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-HSFEAVLDLNAA-- 783 +++ D V+++TIHKSKGLE+P+V+L +Q ++ R + A+L Sbjct: 787 AQVDPDNDAVKLMTIHKSKGLEFPVVFL-------MQANKHFNMRDQTGTAILTKQGIGI 839 Query: 784 ----PES--------VDLAEAER----LAEDLRLLYVALTRS 809 PE+ A+A R LAE++RLLYVALTR+ Sbjct: 840 KWLDPETRVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRA 881 >UniRef50_A7BUG5 UvrD/REP helicase n=1 Tax=Beggiatoa sp. PS RepID=A7BUG5_9GAMM Length = 165 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 16/168 (9%) Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 E +P K W + VG+ +I L Q+GEAL+ GD +P+ A D Sbjct: 10 EDKPINKGWAKQRIPYSVGN-----------EIARLLTLAQKGEALI--GD--KPLAAGD 54 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I++LVR+ +A ++ LT L+IPSV L +R+S+F + E E+ +LQAV + L+ Sbjct: 55 IAILVRTNSQAFSMQKVLTQLQIPSV-LYSRESLFTSHEVMEIERVLQAVADVGNDALLK 113 Query: 614 SALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 +AL T M+GL+ + L +E W + F Y Q+W +G + M+ Sbjct: 114 AALTTDMLGLSGTQLHHLMENETEWQTCLNRFQNYHQLWEHKGFIQMI 161 >UniRef50_A6UEI6 Double-strand break repair helicase AddA n=17 Tax=Rhizobiaceae RepID=A6UEI6_SINMW Length = 1189 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 134/575 (23%), Positives = 245/575 (42%), Gaps = 89/575 (15%) Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVARE----KRRRGELGFDDMLSRL 358 E R L +D+L +R TRA + E + R+ K+ R +L F+D+++R Sbjct: 337 EEARSHLLACVDRLSI----VRMYEATRAALVLAERLNRDYESLKKARSQLDFEDLINRT 392 Query: 359 DSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI--------WHHQPETAL 409 + L RS+ G + + ++DE QDT P Q+ I + + + + Sbjct: 393 AALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADFFAGDTARADDRTI 452 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARS----------EVHAHYTLDTNWRSAPGMVNSVNK 459 +GD KQ+IY+F+GA + + R+ + + L ++RS ++++V+ Sbjct: 453 FAVGDEKQSIYSFQGARPERFSRERTLTERRVRAGNKRFSPIRLQLSFRSTVDVLSAVDT 512 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP-AMKMWLMEGESCGVGDYQST- 517 +F+ +A + +++A+ QP A+ +W + D T Sbjct: 513 VFANIGNARGL----------SARDEAIVHASNRIGQPGAVDLWEVIAPEPAASDEDWTA 562 Query: 518 -------------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE- 563 +A+ AA + DW+ G+ ++ R +R D+ VLVR R Sbjct: 563 PFDATPERAPVNILARRIAAVLEDWI-----GKETVIEKGVRRAMRPGDVIVLVRKRDAF 617 Query: 564 -AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 A +R IP V ++R + + Q+++ L + V+ PE + +L + + ++ Sbjct: 618 VNALMRALKRRGNIP-VAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALFKSPLVN 676 Query: 623 LNALDIETL----NNDEHAWDVV----VEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 L D+ L N E W + VEE Y RK L +S + + Sbjct: 677 LCEDDVFELAARRNEGESLWHRLQQAGVEETSRYNATVRKLAAFSTLSRELSPHDFYARI 736 Query: 675 LATAGGERRLTDIL--HISELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMRLES 731 L GG R L +S++L E T L+ E + + L I + A + + + Sbjct: 737 LGAHGGRRAFLARLGSEVSDILDEFLTFALDHERSGLPGLQAFISTLEIEAPTVKREQDK 796 Query: 732 DKHLVQIVTIHKSKGLEYPLVWL------PFITNFRVQEQAFYHDRHSFEAVLDL----- 780 ++ V+++T+H +KGLE P+V+L F+ +V + F + + +L + Sbjct: 797 ERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQ-QVSDLRFLEKPQADQTLLTVPVWRA 855 Query: 781 -NAAPESVDLAEAERLA-----EDLRLLYVALTRS 809 +AP S+ + ERL E RLLYV +TR+ Sbjct: 856 PGSAPNSLIADDNERLKMLAEEEYRRLLYVGMTRA 890 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 22/144 (15%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A+AG+GKT + +RLLL A RP +L +T+T+AA +E+ R+ + Sbjct: 36 VSANAGSGKTHVLTQRVIRLLL------AGCRP---SAILCLTYTKAAASEMSNRVFEKL 86 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA-------AVFTIHGFC 133 E T D+ E+ +E I+ K A + A R A + TIH FC Sbjct: 87 AEW------ATLDDAALEKRIEAIEGKRPATGKIQEARRLFARALETPGGLKIQTIHAFC 140 Query: 134 QRMLNLNAFESGMLFEQQLIEDES 157 + +L+ E+ + +++D + Sbjct: 141 EALLHQFPLEANVAGHFSVLDDRA 164 >UniRef50_B1MZM2 ATP-dependent helicase/nuclease subunit A n=3 Tax=Leuconostoc RepID=ADDA_LEUCK Length = 1236 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 118/502 (23%), Positives = 218/502 (43%), Gaps = 75/502 (14%) Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 AL + ++ + +F ++DE+QD + Q + ++ + + ++GD KQ+IY Sbjct: 382 ALEILNDDMTRKTVSGQFQEILVDEYQDINQLQETLLTKVSNGH---NMYMVGDVKQSIY 438 Query: 421 AFRGADIFTYMKARSEV------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM----- 469 FR A+ + + + + L N+RS + N +F+Q D + Sbjct: 439 GFRQAEPTLFARKYRQFALPDNPDSRIELADNFRSQNNVTRVTNLIFTQLMDEKLGDIAY 498 Query: 470 FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAA--QIR 527 E +P + + F QP + E ES Q+ AQ+ +R Sbjct: 499 TGEAKLVPKANYPTDVTPVFNMTIIKQPNVTTSEDEDESQEFEKRQAQYAQLANQILSLR 558 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 D ++ E M RPV+ DI++L RS+ + L IP+ + + + Sbjct: 559 DTTIFDRKAEPAGM-----RPVQYGDIAILTRSKTGYIDLVATLRQAGIPT-QVDSVGNY 612 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET--LNNDEHAW------- 638 F+T+E ML +L+ + P ++ L + L + M G + D+ L + +H + Sbjct: 613 FQTMEVYLMLDVLRVIDNPHQDIPLAAILRSPMFGYSENDLAAVRLADKKHDYWSALTVF 672 Query: 639 -------DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 V++ + Q+ + ++ ++ A+ + + + GG +R + LH Sbjct: 673 AQADQRSQTVIDLIKKWHQLAIQNDLVALIWAIFDDTSWLDYVAGMPGGAQRQAN-LH-- 729 Query: 692 ELLQEAGTQLESEHA----LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 L A T E+ HA +R++ Q + E D E+++ V+I+TIH SKGL Sbjct: 730 ALYDYARTYQENTHAGLFRFIRYIEQ-LQENDGQLGEAPQ--EANEQAVRIMTIHASKGL 786 Query: 748 EYPLVWLP-FITNFRVQEQAFYHDRHSFEAVLDLNAA-------PES-VDLAEAERL--- 795 E+P+V+LP F +F Q+ S + ++ NA PE+ V + ++L Sbjct: 787 EFPIVFLPEFDKSFNTQD-------LSGKMLIQKNAGIGLEYLQPEALVAMPTLKKLTVQ 839 Query: 796 --------AEDLRLLYVALTRS 809 +E++RLLYVALTR+ Sbjct: 840 QALKRQSWSEEMRLLYVALTRA 861 >UniRef50_A7IKI6 Double-strand break repair helicase AddA n=2 Tax=Xanthobacteraceae RepID=A7IKI6_XANP2 Length = 1167 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 137/534 (25%), Positives = 221/534 (41%), Gaps = 97/534 (18%) Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 EK RG L FDD++ + + L S+ + + ++DE QDT PQQ+R+ + + Sbjct: 373 EKAARGLLDFDDLIVKA-AQLLSDQPTFVQYKLDQGIDHILVDEAQDTSPQQWRVVQGLA 431 Query: 402 ---------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARS--------EVHAHYTLD 444 L ++GD KQ+I++F+GAD + + RS + L Sbjct: 432 DDFFSGAGAREDVTRTLFVVGDEKQSIFSFQGADPRAFGEMRSTFARKAGPQALRRVELP 491 Query: 445 TNWRSAPGMVNSVNKLFSQTD--DAFMFREIPFIPVKSAGKNQALRFV-------FKGET 495 ++RSAPG++ +V+++FS+ + D + PV +A + A V + T Sbjct: 492 HSFRSAPGVLEAVDQIFSRPEAHDGLTLDAV--APVHAAIRADAPALVEIWPTTTPEPAT 549 Query: 496 QPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 QP W + V D S +AQ +I ++QAG + L + RP+RA D+ Sbjct: 550 QP--DNWRRPLDEAPVDDPVSRLAQ----RIAGFIQAGI-AKGLAIPSRQGRPMRAGDVL 602 Query: 556 VLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDS--VFETLEAQEMLWLLQAVMTPERENTL 612 VLVR R + V AL L+ V ++ D V E + A +++ L +++P+ + L Sbjct: 603 VLVRRRGRVFEAVIRALKELKDAQVEVAGADRLVVAEHIAALDLMALGDTLVSPDDDLAL 662 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLR--------AL 664 + L + + GL D+ L V D + R R AL Sbjct: 663 AALLKSPLFGLTDDDLLALCTGRSGRLV-----DALKAAPDPRHAAAWARLAAWRGEAAL 717 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS---- 720 + + +L GG R + ++ L EA L+ L R + EP S Sbjct: 718 LRPFDFYARVLGRDGGRRAM-----LARLGPEAADVLDEFMVLAR--AYESTEPASLAGF 770 Query: 721 ------NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSF 774 + + +ES ++ V+++T+H +KGLE P+V L + A Sbjct: 771 LAYLRRGGAETKRDMESGRNEVRVMTVHGAKGLEAPIVILADTVDMPKARTA-------- 822 Query: 775 EAVLDLNAAPESVDLAEAERLAED-------------------LRLLYVALTRS 809 L A PE A R AED RLLYVALTR+ Sbjct: 823 -GGLVSVAGPEGEVPVLAPRKAEDPERLAAARATAAARELEEHRRLLYVALTRA 875 >UniRef50_A8U8N0 Exonuclease RexA n=3 Tax=Lactobacillales RepID=A8U8N0_9LACT Length = 1267 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 112/505 (22%), Positives = 218/505 (43%), Gaps = 83/505 (16%) Query: 375 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKA 433 R +F M+DE+QD + Q I R + H Q + L ++GD KQ+IY+FR AD ++K Sbjct: 405 RDKFKEVMVDEYQDINQLQENILRWLAHDQSDQGNLFMVGDVKQSIYSFRLADPGLFLK- 463 Query: 434 RSEVHAHY------TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 + E + H+ L N+RS ++ N +F Q D V ++A Sbjct: 464 KYEQYGHHQSGERIILAENFRSRGEVLQFTNLIFEQLMDK---------AVGQMDYDEAA 514 Query: 488 RFVFKGETQPAMK------MWLMEGESCGVGDYQSTMAQVCAAQIRD-----WLQAGQRG 536 + V PA++ + +G + D + T + +I D L GQ+ Sbjct: 515 QLVQGFSGFPALQKHHPELLIYEKGTTDSEEDSEETESVNWDMRIEDKTEGELLMVGQKI 574 Query: 537 EALLMN--------GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 + L+ RP+R DI +L +++ + + L IP + +++ + F Sbjct: 575 QELIQTQFPIYDKRSKTTRPIRYKDIVLLTPTKKNNLVLMEMFKRLSIP-LQVNDTQNYF 633 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL----------------- 631 +T E M+ LL+ + P ++ L + L + ++GL+ ++ ++ Sbjct: 634 QTTEITIMMSLLKVIDNPYQDIPLAAVLRSPIVGLDENELASIRISQKTGDYYDALKTFY 693 Query: 632 -------------NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 N DV++ + +R++ R+ ++ ++ A+ + + Sbjct: 694 QTYPGIEKASRFTTNLYGKIDVLLTRLNKWRELARRDHLVALIWAIYDDTGFLDYVGGMN 753 Query: 679 GGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 G++R ++ + E T + VR++ + + E D + ++ + D+ V+ Sbjct: 754 SGKQRKANLHALYERAASYEKTSFKGLFQFVRFI-EKMQEKDKDL-AEPTAISEDEDAVR 811 Query: 738 IVTIHKSKGLEYPLVW-LPFITNFRVQEQAFYH----------DRHSFEAVLDLNAAPES 786 ++TIH SKGLE+P+V+ L F +Q+ + D E + + PE+ Sbjct: 812 VMTIHASKGLEFPVVFVLDLTKKFNLQDIKKSYVFNEQYGVGTDYKDLERRIRYPSLPET 871 Query: 787 VDLAEAER--LAEDLRLLYVALTRS 809 E + L+E++R LYVALTR+ Sbjct: 872 ALKVEKKTKLLSEEMRKLYVALTRA 896 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 27/118 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT L R++ + V+E+L+VT+TEAA E++ RI+ Sbjct: 30 LVSASAGSGKT---TVLVQRVIEKIKAGT------NVDEMLIVTYTEAAAKEMKARIQVA 80 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I E + +D L L ++ +++A++ T+H FC +++ Sbjct: 81 IQE----SVTSESDMELKRHLTRQV--------------TLINQASISTLHAFCLQVI 120 >UniRef50_UPI0001BC38AF DNA helicase II / ATP-dependent DNA helicase PcrA n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC38AF Length = 1174 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 137/588 (23%), Positives = 254/588 (43%), Gaps = 88/588 (14%) Query: 307 HPLFEAIDQLLAEPLSIRDLV-ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE 365 +P + ID++ SI +V T A+ R A+E+R+ E F D+ R L S+ Sbjct: 315 YPYEDIIDEVACVRTSITAVVDFTTEFAD-RYREAKEERQIAE--FSDVAHRALEILVSK 371 Query: 366 SGEV-----LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ-PETALLLIGDPKQAI 419 G+ +A + + IDE+QD++ Q +I + + + ++GD KQ+I Sbjct: 372 EGKTEKYTHVADELSELYDEIYIDEYQDSNYVQEKILNAVSRCRFGCNNIFMVGDVKQSI 431 Query: 420 YAFRGA--DIF-----TYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE 472 Y FR A +IF TY + +S L N+RS ++NSVN +F + M + Sbjct: 432 YRFRMARPEIFIDKYNTYTEEQSP-ERKIELHKNFRSTVNVINSVNDIFRR----IMKKS 486 Query: 473 IPFIPVKS-AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQ 531 + I A N + T + M++ E + DY + A+I Sbjct: 487 VGNIEYNDDAALNYGGNIKDEINTDTDICMYVKESD-----DYNDDSKGIINAEI----- 536 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAA-QVRDALTLLEIPSVYLSNRDSVFET 590 A R + ++ ++ + D +L+RS ++A + D L + IP+ Y S F Sbjct: 537 AAMRIKEIMAENEE---LTYKDFVILLRSGKDAGPEYVDTLGNMGIPADYASTT-GYFSA 592 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND---EHAWDVVVEEFDG 647 E + ++ +L+ + +E L + + + G A ++ + + ++ +D + E G Sbjct: 593 YEVRLIIDVLKVIDNERQEIPLLAVMKSYFAGFTANEMALIKGNRRKKNYYDCLCEFSKG 652 Query: 648 YRQIWRK-RGVMPML------RALMSARNIAENLLATAG----------GERRLTDI-LH 689 + +K R M + +M+ R + L+ + G G RR +I + Sbjct: 653 DGETAKKCRKFMNFIGEYRKKAGVMTIRELVSELIYSTGYYDYVGFLLNGSRRKMNINMF 712 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 I + + T VR++ + I D + + +D + V+I+TIH+SKGL++ Sbjct: 713 ILQAEKFEKTSFSGLFNFVRYIDK-IRNYDVDFG-EAGNAGNDNNYVRIMTIHQSKGLQF 770 Query: 750 PLVWLPFITNFRVQEQAFYHDRHSFEAVL--DLNAAPESVDLA----------------- 790 P+V L ++ F + + ++ D + + VDL Sbjct: 771 PVVILG------NSDKRFNEEDLKSKIIIDEDFGISMDYVDLKSRRKQKFLFKEIMKKKY 824 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 E E E++RLLYVALTR+V L V +V + ++ +D+ +S + Sbjct: 825 EREGTGEEIRLLYVALTRAVQ--KLVVTGVVSSKKYEEFTSDIDRSII 870 >UniRef50_B0KGK9 UvrD/REP helicase n=1 Tax=Pseudomonas putida GB-1 RepID=B0KGK9_PSEPG Length = 1061 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 195/812 (24%), Positives = 324/812 (39%), Gaps = 183/812 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 I A AG+GKT+ + L + L + + E ++ TFT A AELR R+RS+ Sbjct: 9 FISAGAGSGKTYRLTELLYQELTS--------QQVQPEGIIATTFTRKAAAELRERVRSH 60 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + DK Q LA M +A + T++ C ++L Sbjct: 61 LL------------------------DKGQVG----LAS-AMGQARIGTVNSLCGQLLEH 91 Query: 140 NAFESGMLFEQQLIED-----------ESLL---RYQACADFWRRHCYPLPREIAQVVFE 185 AFE+GM +Q+++E+ +S+L R +A RR + + + + + Sbjct: 92 FAFEAGMPPQQRVLEEEQAKVLLNQAVDSVLDGTRMEAFLAISRRLGLEVTLQQSDLPSD 151 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ-IVARIDTVKQQWRDA----- 239 +W+ AL R +++ + + +A A+R+AQ ++A ++ DA Sbjct: 152 SWQ--DALRRLLDQLRSNDIDLERA-----RDFAARNAQDLLAHFPSMTSSDLDAELLRT 204 Query: 240 VGELDALIESSGID--------------RRKFNRSNQAKWIDKISAWAEEETNSYQLPES 285 + ++ AL++ + +R+ + N A+W D WA+ + PE+ Sbjct: 205 LPDVLALLQDANSKVKLTATYITLLKDFQRELQQGN-ARWSD----WAKLAKTA---PEA 256 Query: 286 LEKFSQRFLEDRTKAGGETPR--HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREK 343 + +R + E PR L E +DQ+ +L I + + Sbjct: 257 KLTPLVAGVTERVQRYAEHPRLHADLREYLDQIF-------NLAI--------DALQLYS 301 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 R + ELG D + + LR + + + M+DEFQDT P Q IF ++ Sbjct: 302 RNKIELGVLDFADQEHALLRLLDNPAVIEVLEQELDLVMVDEFQDTSPMQLAIFLKL--A 359 Query: 404 QPETALLLIGDPKQAIYAFRGAD------IFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 + + +GD KQAIY FRG+D I + V L +WRS P +V Sbjct: 360 RIAKRVYWVGDIKQAIYGFRGSDCALMQAILGALPGMGGV--KEVLPKSWRSRPELVELT 417 Query: 458 NKLFSQT-DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 N++F+Q ++ E+ P + PA W+++G + Q Sbjct: 418 NEVFTQAFSNSLSADEVRLTPTRQDPLG-----------GPAFANWILDGSNA----EQQ 462 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 T A A I L++ R + AR ++A DI+VL S A+V AL + Sbjct: 463 TCA--LAEGIGQLLES--RYQVFDKTTQQARDLQAGDITVLCYSHSNVAKVAAALAAAGL 518 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN------ALDIET 630 P + + + T EA L L+ + P +TL +A SM A + Sbjct: 519 PCS--TAQPGLLATPEATLALACLRRLNDP--TDTLATAQIVSMTSAEEPESWVAERLHY 574 Query: 631 LNN------------DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS-ARNIAENLLA- 676 L+ D HA +V E R R +P+L + + R IAE LA Sbjct: 575 LHAGHPQGQWREQTVDAHAAHPLVAELA------RLRADLPLLTPVEALQRLIAECDLAR 628 Query: 677 --------TAGGERRLTDILHISELLQ------EAGTQLESEHALVRWLSQHILEPDSNA 722 A ++RL ++ + EL Q G S LV WL Q + Sbjct: 629 CVTGWSTTPAQAQKRLANLDALLELAQRYQDLCRNGLGAASISGLVLWLGQTAGAGNDAL 688 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 ++ + V+++T H SKGLE+P+V L Sbjct: 689 ATPAL------DAVRVMTHHASKGLEWPVVIL 714 >UniRef50_A7Z3H2 YjcD n=3 Tax=Bacillus RepID=A7Z3H2_BACA2 Length = 761 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 123/516 (23%), Positives = 208/516 (40%), Gaps = 93/516 (18%) Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 + + + E R+KR + + FDDM +S + A + RF +IDEFQD Sbjct: 296 KKVYRLYEHYERQKREKRQFDFDDMAQGCYELFQSRPD--ILAQYQNRFSHILIDEFQDI 353 Query: 390 DPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD---IFTYMKARSEVHAHYTLDTN 446 +P QY I + I PE L +GD Q+IYAFRG+ I + K Y L N Sbjct: 354 NPVQYNIMQMIA--SPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIY-LTAN 410 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS +V+S + + + + E VK N + + + E + M Sbjct: 411 YRSPHPIVSSAHAVVKKNKKRY---EKTLSAVKDGVHNPVMFYPYDEEEEATM------- 460 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 + +++ +Q G A P D +VL R+ Sbjct: 461 ---------------IVSDMKEKIQNG------------ASP---DDFAVLYRTNSAGRA 490 Query: 567 VRDALTLLEIPSVYLSNR--DSVFETLEAQEMLWLLQAVMT---PERENTLRSALATSMM 621 + + L IP Y ++R + + +++L L A P+ L AL Sbjct: 491 IYERLHQSSIP--YHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLLPALFLKQS 548 Query: 622 GLNALDIETLNNDEHAWDVVVEEFD-GYRQIWRKRGVMPMLRALMSARNIAENLLATAGG 680 L L ++ D + + D QI + + ++P ++ + + + A + Sbjct: 549 ALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEAITFAESK- 607 Query: 681 ERRLTDILHISELLQE---AGTQLESEHALVRWL----SQHILEPDSNASSQQMR----L 729 + SE L++ G +LE +R + + PD A MR L Sbjct: 608 -------MGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL 660 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDL 789 ++D++ V+++TIH+SKGLE+ V++ + + HD + E + AP Sbjct: 661 KTDENGVELLTIHRSKGLEFNTVYI-----LGAADGSIPHD-FALETARQGDPAP----- 709 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 L E+ RLLYVA+TR++ H L V+ RRG Sbjct: 710 -----LEEERRLLYVAMTRAMQH--LYVSCPAYRRG 738 >UniRef50_UPI0000510074 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510074 Length = 1128 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 159/668 (23%), Positives = 273/668 (40%), Gaps = 132/668 (19%) Query: 233 KQQWRDAV-GELDALIESSGI---------DRRKFNRSNQA----------KWIDKISAW 272 +Q+WRD + G+++ L ++ + +R K ++N+ +++ I Sbjct: 201 RQKWRDRLAGDIEQLRDALRVFQNGEEPPSERPKVTKTNEGNVEGSLVTLDRFLSGIDNG 260 Query: 273 AEEETNSYQLPESL-EKFSQRFLE--DRTKAGGETPRHPLFEAIDQLLAEPL-------- 321 AEE ++P S K ++R KA G P+ L E+ +L++E L Sbjct: 261 AEEAAPFARVPWSTWAKVAERKYTAVPGGKAPGAVPKQVLDESSARLVSEELLANSAFHS 320 Query: 322 ---SIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRF 378 ++ LVI A+A + K G + F D R LR+ E + A+I +R+ Sbjct: 321 DIEALITLVIDTAIASL-SAYEEHKNTLGVMDFVDQEVRALDLLRTN--ERVRASIASRY 377 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA------DIFTYM- 431 + +DEFQD+ P Q IF + E ++ +GD KQAIY FRGA D+F+ + Sbjct: 378 RLLAVDEFQDSSPIQLAIFMELADLVDE--VIWVGDRKQAIYGFRGADPELMNDVFSALI 435 Query: 432 -------KARSEVHAHYTLDTNWRSAPGMVNSVNKLFS-----QTDDAFMFREIPFIPVK 479 KA SE L +WRS + N LFS Q +D + P Sbjct: 436 DGKTELGKATSE-----NLGASWRSTEPALELSNTLFSSVFADQKEDEVVLSIPP----- 485 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 + + LR + E +W+ + G + M + A + D+LQ + Sbjct: 486 ---QREHLRHIGSRE------LWVPTTTAGGTRSADTRMGKAIATGVEDFLQRSPQ---- 532 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 L +GD V+ DI+VLVR+ + ++V L I +V + + T E Q + Sbjct: 533 LSDGD----VKQGDIAVLVRTNSQVSRVVSELRERGIRAV--GSTSDLLSTREGQFVAAG 586 Query: 600 LQAVMTPERENTLRSALATSMM------------GLNALDIETLNNDEHAW--DVVVEEF 645 L AV+ +R++ + A ++M +D + + W D + Sbjct: 587 LAAVV--DRDDAVALAELVTLMPDHGSHDTWFEDAARIVDKKERRDQPRTWWDDPALAAL 644 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH 705 + +L ++M A ++ + + A E RL + + ++ E E Sbjct: 645 SELALNAAHHSPVDLLLSIMDALDLPQRIKAWTTPENRLATLDSLCQIAGEYADAAEQTR 704 Query: 706 ALVR--WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP--LVWLPFITNF- 760 + V L H+ E A S + D LV T+H+SKGL++P +V +P ++ Sbjct: 705 SPVTPAGLLDHLNEA---AGSYEQTTAHDAVLV--TTMHQSKGLQWPVVIVGVPVDKDYG 759 Query: 761 ----RVQEQAFYHDRH---------------SFEAVLDLNAAPESVDLAEAERLAEDLRL 801 V++ + RH ++ + D + +V A E RL Sbjct: 760 HREITVEKAPVFDARHPLANRALRLLPGVLKGYDPLKDRLRSLNAVSRASQAEKDETARL 819 Query: 802 LYVALTRS 809 LYVALTR+ Sbjct: 820 LYVALTRA 827 >UniRef50_A8STY9 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8STY9_9FIRM Length = 1303 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 121/535 (22%), Positives = 234/535 (43%), Gaps = 108/535 (20%) Query: 374 IRTRFPVAMIDEFQDTD-PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA--DIF-- 428 + R+ IDE+QD++ Q+Y + H + ++GD KQ+IY FR A D+F Sbjct: 441 VSLRYREIFIDEYQDSNFIQEYILGSVAGHGENINNTFMVGDVKQSIYKFRMARPDLFIG 500 Query: 429 ---TYM------KARSEVHAHYTLDT-NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV 478 TY KA +++ + + T N+RS ++ +VN LF Q M +EI I Sbjct: 501 KYNTYQRLGDDDKASADMIGNCIILTRNFRSEINVLRTVNALFEQ----LMRKEIGGIEY 556 Query: 479 KSA-------------GKNQALRFVFKGETQPAMKMWLMEGESC-GVGDYQSTMAQVCAA 524 A G+ V++G P ++ +++G++ G D + AQ+ A Sbjct: 557 DDAARLNSKYALEDPHGRMSEPGDVYQG---PKSELIMIDGDTVSGDMDEDYSCAQIEAK 613 Query: 525 QIRDWLQAGQRGE--ALLMNGDD-ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYL 581 I + + G+ + +GD R V SDI +L+RS +A V D + E +Y+ Sbjct: 614 YIANKIHEIVDGDDPMYIHDGDGTVRKVEYSDIVILLRSVSGSATVFDQVFEDEGIPIYI 673 Query: 582 SNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA-------------LDI 628 + F +E ++ +L + + L + L + M+G++ +I Sbjct: 674 QSESGYFGAVEVSCLVSMLSVIDNSYVDGDLAAVLRSPMVGMDEEELARIVGEYRTRYEI 733 Query: 629 ETLNNDEHAWDVVVEEFDGY-------------------------RQIWRKRGVMPML-- 661 + + + +D +++ + + + I + R + ML Sbjct: 734 DGRDYNVRLYDKLIDYLENHDDEGQGECAGLDDMAKSSAAIGDEDKLIGKVRAFVGMLDY 793 Query: 662 ----RALMSARNIAENLLATAG----------GERRLTDILHISELLQEAGTQLESEHAL 707 + MS +I +L G G RR +I + + + + Sbjct: 794 LKENKNFMSLSDIIRYVLDQTGFYWFVGARPMGRRRQANIDMLIKKADDFEKNSKGVFNF 853 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFR-VQ 763 +R++++ L+ +S ++ + + +V+++T+HKSKGLE+P++++ + N + VQ Sbjct: 854 IRYVNE--LKTNSLDFAEADIVSDNDDVVRVMTMHKSKGLEFPVLFVAGLGKSFNMKDVQ 911 Query: 764 EQAFYHDRHSFEA-VLDLNAAPE------SVDLAE--AERLAEDLRLLYVALTRS 809 ++ H ++ A +D +A + +V +E E AE+LR+LYVALTR+ Sbjct: 912 KKVLVHQQYYLTASAIDADARVKRDTFLRNVMASEMRVENYAEELRVLYVALTRA 966 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 20/120 (16%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGL---GGSAAFPRPLTVEELLVVTFTEAATAELR 73 G L+ A+AG+GKT + + ++LG+ G + V+ELLVVTFT AA A+++ Sbjct: 21 GNLLVAAAAGSGKTAVLVERIIEMVLGVDSNGNKLPDQDRVNVDELLVVTFTNAAAAQMK 80 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 +I A L++ D E + I D+ Q L+ + A + TI FC Sbjct: 81 EKIS--------AALQKKID----EYMANGIYDEHLIKQMTLI-----NHAEICTIDSFC 123 >UniRef50_A9WKU6 DNA helicase II n=2 Tax=Bacteria RepID=A9WKU6_RENSM Length = 797 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 115/530 (21%), Positives = 212/530 (40%), Gaps = 122/530 (23%) Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 + +AE+ + R+ L FDD++++ R+ G +A R RF M+DE+QDT Sbjct: 193 QGVAEVYRGYTQRLRQANALDFDDLIAQTVWLFRAFPG--VADYYRRRFRHVMVDEYQDT 250 Query: 390 DPQQYRIFRRIWHHQPETA-----LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT-- 442 + QY + + I + L ++GD Q+IYAFRGADI ++ + T Sbjct: 251 NHAQYALVKEIVGPAEGSGDEPAELTVVGDSDQSIYAFRGADIRNIVEFEKDYPNARTIK 310 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L+ N+RS ++++ N + + D +P ++W Sbjct: 311 LEQNYRSTQTILSAANAVIEKNPD-----------------------------RPVKRLW 341 Query: 503 LMEGESCGVGDY----QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 EG+ + Y + A+ A +I D LQ D R D+++ Sbjct: 342 TAEGDGEKIIGYVAENEHEEARFIAEEI-DRLQ-------------DEADFRPGDVAIFY 387 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 R+ ++ + + L + +P + +E E ++ L L+ ++ PE + LR L Sbjct: 388 RTNAQSRSIEEILMRVGLPYRVVGG-TRFYERKEIKDALAYLRVLVNPEDDVNLRRILNE 446 Query: 619 SMMGLN-----------------------------ALDIETLNNDEHAWDVVVEEFDGYR 649 G+ A+ +LN A + V+ D Sbjct: 447 PKRGIGDRAEGAVAALAERERSSFMAALRHAEDAPAIATRSLN----AVNGFVKLIDDLT 502 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAG--GERRLTDILHISELLQEAGTQLESEHAL 707 ++ G L A++ E L A++ E R+ ++ + +++E + + E +L Sbjct: 503 EVASTSGAATALEAVLEQTGYLETLRASSDPQDESRVENLAELVAVVREY-ERDKPEGSL 561 Query: 708 VRWLSQHILE------PDSNASSQQMRLESDKHL--VQIVTIHKSKGLEYPLVWLPFITN 759 +L L PD+ S + + + L V ++T+H +KGLE+P V+L + Sbjct: 562 TDFLEGVALVADADQIPDAPGSDTEAAVAEARRLGVVTLMTLHTAKGLEFPAVFLTGM-- 619 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 E + P++ +A+ LAE+ RL YV LTR+ Sbjct: 620 ----EHGIF---------------PQARSATDAKELAEERRLAYVGLTRA 650 >UniRef50_B6BUB9 UvrD/REP helicase, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BUB9_9PROT Length = 1015 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 172/796 (21%), Positives = 322/796 (40%), Gaps = 158/796 (19%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 +++A AG+GKT + +++LL + PR E+L VTFT A AE++ RI + Sbjct: 19 IVQAPAGSGKTELLTQRFIKLLAHVNS----PR-----EILAVTFTNKAAAEMKNRITNY 69 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + T N ++L++ ++ + A+ + + + E + TI Q+++N Sbjct: 70 LQN------KTTPKNDTTKKLIDLLN--KEIARRGITVDEIISEFNILTIDALNQQIINS 121 Query: 140 NAFESGMLFEQQLIEDES---------LLRYQACADFWRRHCYPLPREIAQV---VFETW 187 + ++ +IED S ++ ++ +D + + L E Q+ + E Sbjct: 122 TPLLTQYGYQSSIIEDPSPIHSEIIKKVIYAESNSDHIHKMLHTLNIEFPQLEKYLLELM 181 Query: 188 KGPQALLRDI---------NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 + I N+Y+Q E ++E+L H Q +I +K R Sbjct: 182 TNRDKWIHYIFDDENSNEFNKYIQQE---------EEESLT--HLQ---KIFKLKDSIRS 227 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 EL IES ++ ++ + E L F + + + Sbjct: 228 KKSELLHFIESIYTKQKSIRKNIKE--------------------EDLAFFKKNSVSNDI 267 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEI-RETVAREK---RRRGELGFDDM 354 A E P FE + +++ I + LA I +E AR K + + F ++ Sbjct: 268 -ANVEWPDFECFEK-EYYFLNISNLQQSDIIQTLAPILKEAYARIKLYFSQNKVIDFPEI 325 Query: 355 LSRLDSALRSESGEV-LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-QPETALLLI 412 + AL++ESG L + + ++ ++DEFQDT+ Q ++F + H PE + Sbjct: 326 TLQALLALKNESGFTDLKSYLNIKYSHILVDEFQDTNKNQLQLFEYLTHEWGPENTFFCV 385 Query: 413 GDPKQAIYAFRGADIFTYMKA-RSEVHA----HYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 GDP Q+IY FR +D+ ++ ++ V H L N RS +++ N FS+ Sbjct: 386 GDPMQSIYRFRQSDVRIFLDVIKNGVGKIKLNHIILSVNNRSKSRLIHWFNSRFSK---- 441 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIR 527 +F E + + G Q + +E +S + + Sbjct: 442 -IFTE---------------QNIDNGSIQYQLCNPRIEDDSGSINFLSYSSESS------ 479 Query: 528 DWLQAGQRGEALLMNGDDARPVRAS---DISVLVRSRQEAAQV-----RDALTLLEIPSV 579 EA L+ R + AS I+V+ RSR + ++ + I ++ Sbjct: 480 ---SKSSDIEAELI----CRQILASQHESIAVIARSRNHLKPIVSYIKKNYAKQIPINAI 532 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL--NNDEHA 637 L +S+ Q++L L A+ + + + + GL D+ L N DE+ Sbjct: 533 EL---ESLINHQCVQDILALTLAIFDFSDRTHWIATIQSPLCGLAIKDLHILFANKDENI 589 Query: 638 WDVV----VEEFDGYRQIWRKRGVMPMLR----ALMSAR--NIAENLLATAGGERRL--- 684 W ++ V E + Q R + ++ ++ ++ SA+ I L G + L Sbjct: 590 WKLINSEKVNELNSDSQ-KRIKNLIKIIEIHYSSMHSAKWSEIIRTLWVDLAGIKSLYVK 648 Query: 685 TDILHIS---ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 DI +I +LQ T + L++ +++ ++ + S+K V +TI Sbjct: 649 EDIEYIDYYLRILQNFDTNEIDKEVLIKTVTETMVSD----------VNSNKKAVSFLTI 698 Query: 742 HKSKGLEYPLVWLPFI 757 HKSKGLE+ V +P I Sbjct: 699 HKSKGLEFDHVIIPCI 714 >UniRef50_Q3SMQ5 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=Q3SMQ5_THIDA Length = 1089 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 111/454 (24%), Positives = 192/454 (42%), Gaps = 54/454 (11%) Query: 343 KRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 KRR+G + F D L SE LA + R+ ++DEFQDT+P Q++ W Sbjct: 353 KRRQGVIDFADAEWLGCQLLMSEEYAPALAMKLDARYRHLLLDEFQDTNPLQWQALS-TW 411 Query: 402 HHQP-----ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLDTNWRSAP 451 + E + ++GDPKQAIY FR + + A +H+H ++ D R AP Sbjct: 412 LLEARGGGSEMTVFMVGDPKQAIYRFRRGEARVFDAATDFLHSHFEAARFSTDMTRRLAP 471 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF----VFKGE--TQPAMKMWLME 505 +V ++N +F+ R P ++A + ALR V K E T ++ L Sbjct: 472 PVVAALNPVFAGVTGFAEHRHAP----QNAERPGALRVLPLQVEKTEPVTAGGLRNPLTT 527 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 + A+V A +RD + G+ G +++ +R D+ LV+ R Sbjct: 528 ARTEAEDRVVDEEARVFARTLRDEIL-GRWG---VIDKGTSRAAAPRDVIALVKKRTHLH 583 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 L IP + S R + LEA++++ L++ ++ P + L L + + + Sbjct: 584 VYERELEAARIPYIT-SRRGGLLNALEARDLVALIECLLLPHADLKLAHVLKSPIFDCSD 642 Query: 626 LDIETL-----NNDEHAWDVVVEEFDGYRQI------------WRKR-GVMP---MLRAL 664 D+ ++ + W+ ++ + WR+R G +P +L + Sbjct: 643 DDLLSVFAPQPDAGARGWERLLALAEAPHATAEAARAARLLPRWRERCGTLPVHDLLDHI 702 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH----ALVRWLSQHILEPDS 720 ++ A RR ++ +Q A TQ + VR L+ I D+ Sbjct: 703 YCEGDVEARYAAAVPPARRPQVEANLRAFMQLALTQDAGRYPTLAGFVRELASLI--DDA 760 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 +AS + V+++TIH +KGLE P+VWL Sbjct: 761 DASPDEGLAADGADAVRLLTIHGAKGLEAPIVWL 794 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 30/166 (18%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 D A L P R ++EA AG+GKT+ + + LRLLL + A P ELL + Sbjct: 6 DAAIALSPNR-----SAVVEACAGSGKTWLLVSRMLRLLL----AGAAP-----SELLAI 51 Query: 63 TFTEAATAELRGRIRSNIHE-LRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 TFT A E+ R +HE LR+ L D+ L E + A LL R + Sbjct: 52 TFTRKAAQEMTDR----LHEWLRVLAL---ADDATVRAFLREREVPADEIDALLPRARGL 104 Query: 122 DEAA--------VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL 159 EA V T HG+ +L E+G+ + L+E ES L Sbjct: 105 LEAVLSAQPGPTVTTFHGWFLDLLKRAPLEAGLPWGAPLLERESEL 150 >UniRef50_A7HPC8 Double-strand break repair helicase AddA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPC8_PARL1 Length = 1156 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 122/482 (25%), Positives = 205/482 (42%), Gaps = 81/482 (16%) Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMID 384 ++T A+ EI ET + K R L +DD++S+ L R+ + VL + +ID Sbjct: 348 IVTLAV-EILETFDKAKHARALLDYDDLISKTRDLLTMRAMAPWVLYK-LDGGIDHILID 405 Query: 385 EFQDTDPQQYRIFRRIWHHQPETA--------LLLIGDPKQAIYAFRGADIFTY------ 430 E QDT P+Q+ I R+ + + +GD KQ+I++F+GAD + Sbjct: 406 EAQDTSPEQWDIIARLADEFLSGSGARGVVRTIFAVGDEKQSIFSFQGADPARFDDMKIY 465 Query: 431 ----MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 +KA + + L ++RS P ++ +V+K+F +A N Sbjct: 466 FERRVKASEQRWDYVPLTRSFRSVPEVLAAVDKVFESLKARSGL---------TASGNLD 516 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVG--------DYQSTMAQVC------AAQIRDWLQA 532 + + +++W +E G DY + A + AA IR+WL + Sbjct: 517 IHIAHRELDAGLVEIWELEEPDEGQEASPWDAPLDYMTEAAPMAKLAARIAATIRNWLDS 576 Query: 533 GQRGEALLMNGDDARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETL 591 E L+ G RP+RA DI +LVR R ++ L L +P V ++R + E L Sbjct: 577 K---EVLISKG---RPIRAGDILILVRRRNAFVGEMVRHLKELGVP-VAGADRMVLTEQL 629 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL--NNDEHAWDVVVEEFDGYR 649 ++L L + V+ PE + TL + L + G ++ L N W + E+ R Sbjct: 630 AVMDLLALARFVLLPEDDLTLATVLKSPFAGFTEEEVFDLAWNRKGTLWQSLKEK--ATR 687 Query: 650 QIWRKRGVMPMLRALMSA-----RNIAENLLATAGGERRLTDILH------ISELLQEAG 698 +LR L A ++L GG RL L I E L A Sbjct: 688 NPRYAEAAAFLLRLLERADYEPPYEFFAHVLGGEGGRTRLLARLGPEAADPIDEFLSLA- 746 Query: 699 TQLESEH-----ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 + E +H A V WL + +S + ++ + V+++T+H +KGLE +V+ Sbjct: 747 LEFERKHPPALEAFVHWLER-------GSSEIKRDMDQGRDEVRVMTVHGAKGLEAEIVF 799 Query: 754 LP 755 +P Sbjct: 800 MP 801 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 20/130 (15%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A+AG+GKT + RLLL G+ + +L +TFT+AA AE+ R+ + Sbjct: 27 VSANAGSGKTHALTTRVARLLLA--GT-------DPQRILCLTFTKAAAAEMSARLYKRL 77 Query: 81 HELRIACLRETTDNPLYERLLE---EIDDKAQ---AAQWLLLAERQMDEAAVFTIHGFCQ 134 E + +D L E +LE D A+ A Q A + TIH FC+ Sbjct: 78 GEWAM-----MSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPGGLKIQTIHAFCE 132 Query: 135 RMLNLNAFES 144 R+L E+ Sbjct: 133 RLLGRFPLEA 142 >UniRef50_Q8RCZ0 ATP-dependent helicase/nuclease subunit A n=3 Tax=Thermoanaerobacteraceae RepID=ADDA_THETN Length = 1204 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 204/903 (22%), Positives = 349/903 (38%), Gaps = 192/903 (21%) Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 AL+ S E + + R +F IDE+QD+ Q I I P + +GD KQ+IY Sbjct: 367 ALKILSNEEVVSYYREKFEEIFIDEYQDSSLIQEAILSLIARDNPPNRFM-VGDVKQSIY 425 Query: 421 AFRGADIFTYMKARSEV-----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 FR A+ + + + + + L N+RS ++++VN +F + M + I Sbjct: 426 RFRQANPYIFFEKYTSYSQEGENKKILLYKNFRSRKEIIDAVNYIFEKI----MSKNIGE 481 Query: 476 IPVKSAGKNQALRFVFKGETQPAMK---------------MWLMEGESCGVGDYQSTMAQ 520 + + + L + E+ P K E + + D Q A Sbjct: 482 V---DYSEEEKLNYGANYESNPFEKENERTVEVHLIEREREEEFEEDEEILDDMQ-VEAH 537 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSV 579 V +I+ + G + + G RPV DI VL+R+ ++ A + + IP V Sbjct: 538 VVGERIKGLFREGFKVYDKEIGG--YRPVEYRDICVLLRATEKWAYAFEEEFVKMGIP-V 594 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA---LDIETLNNDEH 636 + F+T E + ML LLQ + P ++ L + L + + +DI + D Sbjct: 595 FADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRSPIFSFTEEELVDIRLEDADGT 654 Query: 637 AWDVV-------------VEEFDGYRQIWRKRGV-MPM---LRALMSARNIAENLLATAG 679 ++ + V F + W+++ + MP+ L L + A Sbjct: 655 IYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVDEFLWYLYEETGFYSYVGAMPQ 714 Query: 680 GERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 G R ++ + E +E T + V ++++ L S + ++++V++ Sbjct: 715 GVERQANLRVLFERAKEYEETSFKGLFNFVNFINR--LRTTSTDMGSAKTVGENENVVRV 772 Query: 739 VTIHKSKGLEYPLVWLP-----FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVD----- 788 ++IHKSKGLE+P+V + F T + E+ YH H L PE VD Sbjct: 773 MSIHKSKGLEFPIVIVAGLGKQFNTK-DLNEKILYH--HF------LGIGPEFVDYRRRL 823 Query: 789 -----LAEA-------ERLAEDLRLLYVALTRSVWHCSL--------------GVAPLVR 822 + EA E L+E++R+LYVALTR+ L G A L+ Sbjct: 824 SYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERAKKWGKAKLL- 882 Query: 823 RRGDKKGDTDVHQSA-----LGRLLQKGEPQDAAGLRTCIEA---LCDDDIAWQTAQTGD 874 G K + DV +S +G L + +D LR E L D W+ Sbjct: 883 --GKKISEYDVLKSRSYIDWIGSALIRH--RDLKLLREFAEISPELEQDSSKWEV----- 933 Query: 875 NQPWQVNDV---STAELNAKTLQRLPGDNWR----------------VTSYSGLQQRGHG 915 + W DV + + L+RL N V Y + Sbjct: 934 -KIWNKRDVIIERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAK 992 Query: 916 IAQDLMPRL---DVDAAGVASVVEEPTLTPHQF---PRGASP---GTFLHSLFEDLDFTQ 966 ++ + R+ +V S+ E L F RG +P G +H + + LD ++ Sbjct: 993 LSVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSK 1052 Query: 967 PVDPNWVREKL------ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 + ++E++ E+ E Q + V I + PL G L L A+ + E Sbjct: 1053 DLSYRGIKEQIKDMVKNEILT-EEQAKEVDANKIERFFKTPL---GKRL--LKAKEVRRE 1106 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 + F++ IS I L + ++ EF+ V+G+ ID F EG L+D Sbjct: 1107 VPFHIKISSREIYRDLPEVYQE-----------EFIAVQGI----IDCFFEEEGELVLID 1151 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YK++ Y + ++ +Y +Q LY AL ++ + IY Sbjct: 1152 YKTD--------YVENGKIEEIR-DKYRVQIDLYGKALEEITGKKVKE--------KYIY 1194 Query: 1141 LFL 1143 LF Sbjct: 1195 LFF 1197 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 35/118 (29%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT A L R++ + +P+ ++ LLVVTFT AA +E+R RI Sbjct: 21 LVAAAAGSGKT---AVLVERIINIVTDP---EKPVDIDRLLVVTFTNAAASEMRERIA-- 72 Query: 80 IHELRIACLRETTDNPLYERLLEEID----DKAQAAQWLLLAERQMDEAAVFTIHGFC 133 ERL+ +D DK A Q LL ++A + TIH FC Sbjct: 73 ------------------ERLISLLDQHPEDKRLADQLTLL-----NKATITTIHSFC 107 >UniRef50_C9LQY5 ATP-dependent nuclease subunit A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQY5_9FIRM Length = 1285 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 138/570 (24%), Positives = 242/570 (42%), Gaps = 109/570 (19%) Query: 323 IRDLVITRALAEIRETVAR----EKRRRGELGFDDM--------LSRLDSALRSE-SGEV 369 IR I RAL+++ +R K++ G + F DM + + E +GE Sbjct: 342 IRMHPIVRALSDVTIAFSRAYADRKKKEGLMEFTDMEHYVLDILVDKTAEGFTPERAGEF 401 Query: 370 LAAAIR---TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 ++A R ++ MIDE+QDT+ Q I + + + ++GD KQ+IY FR AD Sbjct: 402 PSSAARELQKKYKEIMIDEYQDTNDVQELIATLLSNGRNR---FMVGDVKQSIYRFRQAD 458 Query: 427 --IF--TYMKARSEVHAH---YTLDTNWRSAPGMVNSVNKLFSQTDDAFMF------REI 473 IF Y S+ +A L+ N+RS ++ S+N +F Q + RE Sbjct: 459 PTIFQKKYRSFSSDENAEDRRIDLNRNFRSDAAILASINYIFRQLMSEKLLELDYGDREA 518 Query: 474 PFI-------PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM--AQVCAA 524 + P AG + F+ K + + M V D S ++ A Sbjct: 519 LYPGRHEDSRPAAYAGGAVEVEFIDKVTDENTVPM------DESVNDITSITFEGRLIAK 572 Query: 525 QIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLS 582 +IR ++ ++ +MN D R SDI++L+RS ++A + L IP+ Sbjct: 573 KIRALMEEKRQ----VMNKDGTFRSTDYSDIAILLRSIDKKAPALLKVLNEEHIPAT-AD 627 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-----NDEHA 637 D ++E Q + LL+ + P ++ L + L + + GL+ D L ++ Sbjct: 628 KDDDFIRSMEVQILWSLLKILDNPRQDLPLLAVLRSFLAGLDEEDFARLRLALAPEEDSL 687 Query: 638 WDV-------VVEE-----------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG 679 WD+ + EE ++ +R+ RK GV P+LR ++ + + Sbjct: 688 WDILPRAKGIIPEEKALRLSRFLLLYETWRKEARKDGVAPLLRRIIEDTDYLSWVAGLPN 747 Query: 680 GERRLTDILHISELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 G + +L EL + + + + + +L + + + + + + VQI Sbjct: 748 GTAGKSHVLSFYELAKTRDSATVNGLFSFLEYLRR------AQKDFKTISTSAKGNAVQI 801 Query: 739 VTIHKSKGLEYPLVWLP-FITNFRVQE---QAFYHDR-----HSFEAV----------LD 779 ++IHKSKGLE+P+V+L +F V++ +H H F+ + Sbjct: 802 MSIHKSKGLEFPVVFLADAAKSFNVKDLDRTVIFHREMGLGIHYFDKEHMAHWPSLYWMA 861 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRS 809 + A A E AE+ RLLYVA+TR+ Sbjct: 862 IRTA------AGREAQAEEARLLYVAMTRA 885 >UniRef50_Q0BQJ4 ATP-dependent nuclease subunit A n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BQJ4_GRABC Length = 1159 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 136/544 (25%), Positives = 222/544 (40%), Gaps = 86/544 (15%) Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEF 386 +TR + E A++K RRG + F D++ R + LR + + ++DE Sbjct: 345 ALTRLAIPVAEAYAKDKARRGLVDFSDLIGRTSALLREPGAAWVLYKLDGGIDHLLLDEV 404 Query: 387 QDTDPQQYRIF------------RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 434 QDT P+Q+ I R +P T + +GDPKQ+IY+F+GAD + R Sbjct: 405 QDTAPEQWEIAGTLTAEFFAGLDDRAEQGKPRT-VFAVGDPKQSIYSFQGADPQAFRHWR 463 Query: 435 SEVHAHYT--LDTNWRSAPGMVN--SVNKLFSQTDDAF--------------MFREIPFI 476 + AH + WR P V+ S + + TD F R +P Sbjct: 464 G-IMAHRVQQIGYEWRDRPLTVSFRSTAPVLALTDAVFADPLARQGVIEPEETLRHLPDR 522 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 + AG + V ET P W E G +T A + A ++ DW+ A + G Sbjct: 523 -AEDAGTVEIWEPVQTPET-PTRPAW-QPAEEYGT---HTTAASLLAGRLADWI-ASRIG 575 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRD-ALTLLEIPSVYLSNRDSVFETLEAQE 595 + L + RP+ A D +L+R R+ A + + AL L +P L +R + + Sbjct: 576 QTL---PSENRPIHAGDYLILLRRRKPFAPLLERALKLRGVPVAGL-DRLPLTSQPAVAD 631 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETL---------------NNDEHAWD- 639 +L L ++ P+ + L L + + GL+ + L + AWD Sbjct: 632 LLALCDTLLLPDDDMALACLLTSPLGGLSDDSLMELALGRRDTLWGTLRKRRKERTAWDQ 691 Query: 640 --VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697 +E+ G ++ AL+ R A L A G E ++ ++ A Sbjct: 692 AASFLEDMLGQVDYTTPHALLSA--ALVRHRGRA-RLFARLGAEASEPIDELLNAAMRYA 748 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP-F 756 S V WL + +A + + S V+I+T+H SKGLE P+V LP Sbjct: 749 QLHPPSLQGFVHWLRR-------SAPEVKREMSSGGQAVRIMTVHGSKGLEAPIVILPDT 801 Query: 757 ITNFRVQEQAFYHD-----------RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 805 ++ R + + + + + + D A E+ + +A R E RLLYVA Sbjct: 802 VSTPRTENSILWTEDPETGLSVPLWKPNQDFQCDSFAVLEAKE--QAARQEEYNRLLYVA 859 Query: 806 LTRS 809 LTR+ Sbjct: 860 LTRA 863 >UniRef50_C1D2W1 Putative ATP-dependent nuclease subunit A (AddA),; putative UvrD/REP helicase,; putative ATP-dependent exoDNAse (Exonuclease V) beta subunit (RecB) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D2W1_DEIDV Length = 553 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 26/300 (8%) Query: 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 L + A +R+ A K + F D+ + D+AL+ + + A R+ +IDE Sbjct: 176 LALGALFAHVRQRFAELKAEQEIATFADLETYADTALQQAAVQAYYA---DRWTHLLIDE 232 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----Y 441 QDT+P Q+RI + L ++GD KQ+IYAFR AD+ + A++EV A Sbjct: 233 AQDTNPVQWRILSAL--AGSGVNLTVVGDEKQSIYAFRRADVEVFRAAQTEVQARGGSVI 290 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGET-----Q 496 + ++R+ G+V+++N F + P + +A + + L F+ E+ Sbjct: 291 PMGMSFRTHAGLVSAINTYFEN------LMQGPDMDRPTAARFEPL-TAFRAESPSGSDT 343 Query: 497 PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 +++ ++GE ++ A A +I+ L AGQ +NG RP+R SDI++ Sbjct: 344 ACVELHALQGEDEAT--LRAAEAAYLAGRIQALLLAGQPVYDRALNG--TRPLRLSDIAL 399 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L R+R +AL +P V R +++ E + LLQAV P + +L + L Sbjct: 400 LYRARTHQQVYENALAAAGLPYVVHGGR-GLYDRPEVLDATNLLQAVADPTADVSLVAVL 458 >UniRef50_C0CXS0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXS0_9CLOT Length = 851 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 112/512 (21%), Positives = 214/512 (41%), Gaps = 95/512 (18%) Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQ-PETALLLIGDPKQAIYAFRGA------DIFT 429 +F ++DE+QD++ Q + I + + + ++GD KQ+IY FR A D + Sbjct: 13 QFEEILVDEYQDSNNVQETLITSISRERWGKPNVFMVGDVKQSIYRFRLARPELFMDKYE 72 Query: 430 YMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ-----------TDDAFMFREIPFIPV 478 +H L N+RS +++SVN +F + T++ + F P Sbjct: 73 RYSVSESLHQKIELHQNFRSRATVLDSVNDVFYKIMTRALGGIRYTEETALHPGAQFAPG 132 Query: 479 KSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST--MAQVCAAQIRDWLQAGQRG 536 + G L V G A + ++ E+ DY + A++ A +IR+ + Sbjct: 133 ERTGTPTELLLVDTG----ADALKQLDEEAM---DYTAKELEARMVAIRIRELMDPENGL 185 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 ++ RPVR D+ +L+RS ++V + + E Y + F T+E + + Sbjct: 186 MVWDKGAEEYRPVRLGDMVILLRSLSGWSEVFVNVLMNEGIPAYAQTKTGYFNTVEVETV 245 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDI---------------------------- 628 L LL V P ++ L + + + M+ + ++ Sbjct: 246 LSLLAVVDNPMQDIPLAAVMKSPMVSMTDEEMAWMMAAYKRTPEKGQDRGVYGAFMHWKE 305 Query: 629 ---ETLNNDEHAWDVVVEE-------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 E ++ E A + + E+ +G R+ R V +L A + + A Sbjct: 306 NGGEGVDAPEEAVEAIGEKLACLETLLEGLRRDARYLPVHQLLYRAFEAGGYYDYVSAMP 365 Query: 679 GGERRLTDI-LHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 GE R ++ + + + + T + +R++ + + + D++ + E V+ Sbjct: 366 AGETRRANLDMLVEKAIAYEATSYKGLFHFIRYI-EKLKKYDTDFGEANVAGEQ-ADTVR 423 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVL---DLNAAPESVDLA---- 790 I++IHKSKGLE+P+V+L + ++ + ++ AVL DL A + +DL Sbjct: 424 IMSIHKSKGLEFPVVFLAGMGK-------RFNKQDAYGAVLLDADLGLAADYLDLKQRLK 476 Query: 791 -------------EAERLAEDLRLLYVALTRS 809 E E + E+LR+LYVA+TR+ Sbjct: 477 MPTLKKQALKRRMELESMGEELRVLYVAMTRA 508 >UniRef50_C0GCZ7 UvrD/REP helicase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCZ7_9FIRM Length = 1069 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 140/530 (26%), Positives = 226/530 (42%), Gaps = 88/530 (16%) Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI-- 400 ++R ++ F D+L R + L++ S + + R+ ++DEFQDTDP Q I + Sbjct: 318 RQRENQVNFQDLLMRTAALLKNNSE--VRGYFQNRYTHLLVDEFQDTDPIQAEIMMFLTG 375 Query: 401 -------WHH-QPET-ALLLIGDPKQAIYAFRGADIFTY-------MKARSEVHAHYTLD 444 W P+ AL ++GDPKQ+IY FR ADI TY KA EV L Sbjct: 376 CDLTETDWTKISPKPGALFVVGDPKQSIYRFRRADIDTYNRVKDLIKKANGEV---LHLT 432 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPF----IPVKSAGKNQALRFVFKGETQPAMK 500 N+RS +++ VN +F DD P+ +P++ KN P Sbjct: 433 ANFRSLTEIIDWVNPVF---DDLLTQSVAPYQADAVPMQPVRKN-----------HPDNT 478 Query: 501 MWLMEGESCGVGDY-QSTMAQVCAAQIRDWLQAGQRGEALLMN-------GDDARPVRAS 552 + + E G+ + Q T+ AA+I W++ G L G A P + Sbjct: 479 GGIFKIEIPGITYHKQETIVSEDAARIAAWIRTCLDGNVTLTRTAEEEQAGLSATP-SPN 537 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 D +LVR + + AL IP LS + + E QE+ LLQA+ P+ L Sbjct: 538 DFLILVRYKDYMSLYARALEEYNIP-FSLSGASDIAASRELQELHLLLQALADPDNPVPL 596 Query: 613 RSALATSMMGLNALDIETLNNDEHAW--------DVVVEEF-------DGYRQIWRKRGV 657 + L G++ D+ L + D VE F YR R+ Sbjct: 597 VATLRGLFFGVSDEDLYRLKKANGRFCLLSPIPDDPTVESFIPIWEKLQQYRAWTRELPP 656 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH-ALVRWLSQHIL 716 + ++S + LA + G+ R IL + EL++ ++ A V ++S+ +L Sbjct: 657 SSAIENIISDLGLIPYALAGSMGKGRTGYILQLLELIRSREQNGQTTFPATVDFISE-LL 715 Query: 717 EPDSNASSQQMRLESD-KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFE 775 E +++ +E+ V+I+ +HK+KGLE P+V+L +E + R S Sbjct: 716 E---AGMEEELDVEAGIAPAVRIMNLHKAKGLEAPVVFLANPGKTVTREPNLHVSRTSGT 772 Query: 776 A------------VLDLNAAPESVDLAEAERL----AEDLRLLYVALTRS 809 ++ A P + ++ +AE AE+ RLLYVA TR+ Sbjct: 773 PKGYLQISKRENYASEIFAQPTNWEVHQAEETLYQQAEEARLLYVAATRA 822 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 26/127 (20%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+EA AG+GKT ++ + L+ G +E + VTFT A ELR R + Sbjct: 24 LVEAGAGSGKTTSLVQ-RMTALISTGQCQ-------MENMAAVTFTRKAAGELRERFQEK 75 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + ++T +P ++ LE A Q+D A + TIH FC R+L Sbjct: 76 LEKEY-----QSTTDPTTKQTLE-------------TALSQLDRAFIGTIHSFCSRLLRE 117 Query: 140 NAFESGM 146 E+GM Sbjct: 118 RPVEAGM 124 >UniRef50_A8EXT1 ATP-dependent helicase n=14 Tax=Rickettsia RepID=A8EXT1_RICCK Length = 872 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 116/548 (21%), Positives = 238/548 (43%), Gaps = 91/548 (16%) Query: 343 KRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 K L +DD++ + L ++ + E L + ++ ++DE QDT P Q+ I + Sbjct: 308 KEENNLLDYDDLIYYTEKLLNNKATHEWLLHKLESKINHILVDEAQDTTPTQWNIITTLI 367 Query: 402 HH-----QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDTN 446 +P ++ ++GD KQ+I++F+GAD+ + ++ A+ TL+ + Sbjct: 368 TEFNAMDKPNNSIFIVGDDKQSIFSFQGADLRNFSLVNEQLKANLTKANKKFKNITLEYS 427 Query: 447 WRSAPGMVNSVNKLFSQTDDAF---MFREIPFI-------------PVKSAGKNQALRFV 490 +RS ++ + + + F + P I P+ ++ K + L + Sbjct: 428 YRSCTEILQFTHYVLQNIKSDYPNLFFPDNPLISSFRTHQGTVTVWPLVTSKKQEELFWA 487 Query: 491 FKGETQPAMKM--WLMEGESCGVGDY---QSTMAQVCAAQ-------IRDWLQAGQRGEA 538 + + + L+E + + + + +CA + + + + +G Sbjct: 488 LPEDYKNSKSAADLLIEQIVNFIKEKIESKEILPSICAMKSGYTKINLENSKEFVNQGAE 547 Query: 539 LLMN----------GDDARPVRASDIS-----VLVRSRQE-AAQVRDALTLLEIPSVYLS 582 ++N D A +S IS +LVR R E + + L+ ++ + +S Sbjct: 548 CILNVQCPSHSDYKNDSANFSNSSRISEKDFMILVRKRDEFSNNLIKELSKAKL-KIEIS 606 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL---NNDEHAWD 639 +R ++ + L +++ + + V+ P+ + L L + ++G+N + L D+ WD Sbjct: 607 DRINLKDHLSIMDLMSVAKFVLLPDDDLNLACLLKSPIIGINEQQLYELLINKKDQSLWD 666 Query: 640 V------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR---LTDILHI 690 + E+ + + +I++ ++++ N+ E LL G+ + ++L + Sbjct: 667 TLSLYLDIYEKLNSFIEIYKTSTAENFFTIVVNSLNLRE-LLNVHNGDDSDDMINELLTL 725 Query: 691 SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 S A S V W ++N ++ SDK ++++T+H SKGLE P Sbjct: 726 SS--NYANDIDNSLQGFVAWFE------NNNIYIKRNMEHSDK--IRVMTVHGSKGLEAP 775 Query: 751 LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAA--PESV-DLAEAERLA---EDLRLLYV 804 +V L T+ V F + + E NAA P+ + +L EAE+L E +RLLYV Sbjct: 776 IVILCDSTSLPVSSNKFIWNDNG-EMFFSANAADTPQFLQELKEAEKLKDLQEYIRLLYV 834 Query: 805 ALTRSVWH 812 A+TR+ H Sbjct: 835 AMTRAKDH 842 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 18/143 (12%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + ASAGTGKT + +LRLL+ G A +L +TFT AA E++ RI S + Sbjct: 17 VSASAGTGKTKVLTDRFLRLLIK-GVEPA--------NILCLTFTNAAAVEMQARINSKL 67 Query: 81 HELRIACLRETTDNPLY-----ERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 L + C E + L+ + L E+++ +L + ++ ++TIH FCQ+ Sbjct: 68 KYLSL-CNAEKLEEELFLMLGNKPLQPELENAKTLYDKILNSNEPLN---IYTIHAFCQK 123 Query: 136 MLNLNAFESGMLFEQQLIEDESL 158 +L E+G+ E +++E+ L Sbjct: 124 ILKTCPLEAGITPEFKILEETKL 146 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08394 Exodeoxyribonuclease V beta chain n=100 Tax=Ente... 1665 0.0 UniRef50_A4TLB8 DNA helicase/exodeoxyribonuclease V, beta subuni... 1352 0.0 UniRef50_C5BH93 Exodeoxyribonuclease V, beta subunit, putative n... 1285 0.0 UniRef50_A7K3N4 Exodeoxyribonuclease V, beta subunit n=67 Tax=Ga... 1222 0.0 UniRef50_C4L7B3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Tol... 1143 0.0 UniRef50_Q493D5 Exonuclease V n=1 Tax=Candidatus Blochmannia pen... 1117 0.0 UniRef50_Q2BKD8 ATP-dependent exoDNAse beta subunit n=1 Tax=Nept... 1108 0.0 UniRef50_A1SUW1 DNA helicase/exodeoxyribonuclease V, beta subuni... 1092 0.0 UniRef50_Q1LST8 Exodeoxyribonuclease V, beta subunit n=2 Tax=Gam... 1091 0.0 UniRef50_C0QI07 RecB n=1 Tax=Desulfobacterium autotrophicum HRM2... 1050 0.0 UniRef50_D2BZV4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Dic... 1048 0.0 UniRef50_A8FUM4 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gam... 1038 0.0 UniRef50_A4XTT1 DNA helicase/exodeoxyribonuclease V, beta subuni... 1021 0.0 UniRef50_A6W0A9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Mar... 1020 0.0 UniRef50_A4CBT2 Exonuclease V, beta chain with recC and recD: 5'... 1011 0.0 UniRef50_B0TRK3 Exodeoxyribonuclease V, beta subunit n=4 Tax=She... 1009 0.0 UniRef50_Q080D8 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gam... 1008 0.0 UniRef50_Q0AGC8 DNA helicase/exodeoxyribonuclease V, beta subuni... 1000 0.0 UniRef50_A1WWI3 DNA helicase/exodeoxyribonuclease V, beta subuni... 999 0.0 UniRef50_Q0HJB9 Exodeoxyribonuclease V, beta subunit n=11 Tax=Sh... 998 0.0 UniRef50_Q8K9A9 Exodeoxyribonuclease V beta chain n=5 Tax=Buchne... 996 0.0 UniRef50_C0N789 Exodeoxyribonuclease V, beta subunit n=1 Tax=Met... 995 0.0 UniRef50_A3YGC7 Exodeoxyribonuclease V, 135 kDa subunit n=3 Tax=... 991 0.0 UniRef50_P45157 Exodeoxyribonuclease V beta chain n=17 Tax=Haemo... 989 0.0 UniRef50_B4X4Z1 Exodeoxyribonuclease V, beta subunit n=1 Tax=Alc... 988 0.0 UniRef50_C9PR37 Exodeoxyribonuclease V beta subunit n=1 Tax=Past... 987 0.0 UniRef50_Q12LP4 Exodeoxyribonuclease V, beta subunit n=3 Tax=Gam... 986 0.0 UniRef50_Q8D2T8 RecB protein n=1 Tax=Wigglesworthia glossinidia ... 983 0.0 UniRef50_C9R4S1 Exodeoxyribonuclease V, beta subunit n=5 Tax=Pas... 980 0.0 UniRef50_Q7VRE9 Exonuclease V, beta chain n=1 Tax=Candidatus Blo... 979 0.0 UniRef50_Q1QYD3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chr... 978 0.0 UniRef50_Q65TK4 RecB protein n=1 Tax=Mannheimia succiniciproduce... 976 0.0 UniRef50_A1S6V0 Exodeoxyribonuclease V, beta subunit n=1 Tax=She... 972 0.0 UniRef50_A7JVG0 Exodeoxyribonuclease V n=3 Tax=Mannheimia haemol... 967 0.0 UniRef50_A1AQY7 DNA helicase/exodeoxyribonuclease V, beta subuni... 964 0.0 UniRef50_Q3IJ14 Exonuclease V, beta chain with recC and recD: 5'... 961 0.0 UniRef50_C8KZ30 Exodeoxyribonuclease V beta chain n=2 Tax=Actino... 960 0.0 UniRef50_A6VNJ9 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pas... 959 0.0 UniRef50_A4JS84 DNA helicase/exodeoxyribonuclease V, beta subuni... 959 0.0 UniRef50_Q1N2R0 Exodeoxyribonuclease V beta chain n=1 Tax=Berman... 953 0.0 UniRef50_Q2SQD6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hah... 952 0.0 UniRef50_B0BTM4 Exodeoxyribonuclease V, beta subunit n=6 Tax=Pas... 950 0.0 UniRef50_Q74CY7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Geo... 950 0.0 UniRef50_A1TWK0 DNA helicase/exodeoxyribonuclease V, beta subuni... 946 0.0 UniRef50_A4SEL9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chl... 944 0.0 UniRef50_Q0I3D6 DNA helicase/exodeoxyribonuclease V, beta subuni... 942 0.0 UniRef50_C5SAK7 Exodeoxyribonuclease V, beta subunit n=1 Tax=All... 942 0.0 UniRef50_Q60AZ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Met... 938 0.0 UniRef50_B5JRL3 Exodeoxyribonuclease V, beta subunit n=1 Tax=gam... 932 0.0 UniRef50_Q2LTC8 Exodeoxyribonuclease V beta chain n=1 Tax=Syntro... 925 0.0 UniRef50_C7LVF7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 919 0.0 UniRef50_A8ZX09 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 915 0.0 UniRef50_B8FB94 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 914 0.0 UniRef50_A4VRQ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Pse... 910 0.0 UniRef50_A9BRA9 Exodeoxyribonuclease V, beta subunit n=4 Tax=Com... 907 0.0 UniRef50_C5JAU7 Exodeoxyribonuclease V, beta subunit n=1 Tax=unc... 902 0.0 UniRef50_C3X2X2 ATP-dependent exoDNAse beta subunit n=2 Tax=Oxal... 901 0.0 UniRef50_Q5QUQ8 ATP-dependent exoDNAse (Exonuclease V) beta subu... 900 0.0 UniRef50_Q89AB3 Exodeoxyribonuclease V beta chain n=2 Tax=Bacter... 899 0.0 UniRef50_C7I4N6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Thi... 892 0.0 UniRef50_B1XZ25 Exodeoxyribonuclease V, beta subunit n=1 Tax=Lep... 889 0.0 UniRef50_B5EPU6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Aci... 888 0.0 UniRef50_Q3B472 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pel... 883 0.0 UniRef50_C1D6T6 RecB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 880 0.0 UniRef50_D0KVH3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hal... 861 0.0 UniRef50_B3ECZ4 Exodeoxyribonuclease V, beta subunit n=5 Tax=Chl... 861 0.0 UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=P... 843 0.0 UniRef50_Q6ANK1 Related to exodeoxyribonuclease V, beta chain n=... 843 0.0 UniRef50_Q1NY14 Exodeoxyribonuclease V, beta subunit n=2 Tax=del... 840 0.0 UniRef50_A1KCB1 ATP-dependent exoDNAse beta subunit n=3 Tax=Beta... 837 0.0 UniRef50_B4RTM1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Bac... 835 0.0 UniRef50_A6DNF2 Exodeoxyribonuclease V, 135 kDa subunit n=1 Tax=... 833 0.0 UniRef50_A4B915 Exodeoxyribonuclease V, beta subunit n=1 Tax=Rei... 829 0.0 UniRef50_Q7NQR1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Chr... 822 0.0 UniRef50_Q3JU29 Exodeoxyribonuclease V, beta subunit n=25 Tax=ps... 818 0.0 UniRef50_C8R0F2 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 817 0.0 UniRef50_C6NU55 Exodeoxyribonuclease V beta chain n=1 Tax=Acidit... 815 0.0 UniRef50_C4ZM86 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pro... 795 0.0 UniRef50_Q480N9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Col... 783 0.0 UniRef50_C1ACJ1 Exodeoxyribonuclease V beta subunit n=1 Tax=Gemm... 777 0.0 UniRef50_A9M3L9 Exodeoxyribonuclease V beta subunit n=30 Tax=Nei... 767 0.0 UniRef50_Q057F5 Exodeoxyribonuclease V, b chain n=1 Tax=Buchnera... 758 0.0 UniRef50_D1N1Q3 Exodeoxyribonuclease V n=1 Tax=Victivallis vaden... 751 0.0 UniRef50_B2I7Y5 UvrD/REP helicase n=11 Tax=Xanthomonadaceae RepI... 751 0.0 UniRef50_C4GIJ8 Putative uncharacterized protein n=1 Tax=Kingell... 751 0.0 UniRef50_C7PDT4 Exodeoxyribonuclease V n=1 Tax=Chitinophaga pine... 749 0.0 UniRef50_B5EAR6 Exodeoxyribonuclease V, beta subunit n=5 Tax=Geo... 747 0.0 UniRef50_A7NB27 Exodeoxyribonuclease V, beta subunit n=21 Tax=Fr... 745 0.0 UniRef50_Q05XZ6 Putative uncharacterized protein n=1 Tax=Synecho... 724 0.0 UniRef50_B5JHV0 UvrD/REP helicase domain protein n=1 Tax=Verruco... 722 0.0 UniRef50_Q0IBA6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Syn... 717 0.0 UniRef50_A2C8A3 Possible UvrD/REP helicase subunit B n=2 Tax=Pro... 712 0.0 UniRef50_A3YYL1 UvrD/REP helicase-like protein n=1 Tax=Synechoco... 712 0.0 UniRef50_C0DS65 Putative uncharacterized protein n=1 Tax=Eikenel... 705 0.0 UniRef50_Q15V10 DNA helicase/exodeoxyribonuclease V, beta subuni... 704 0.0 UniRef50_UPI0000E0F57F exodeoxyribonuclease V, beta subunit n=1 ... 702 0.0 UniRef50_B0VLS1 Exonuclease V, beta chain n=13 Tax=Acinetobacter... 696 0.0 UniRef50_B5IMW6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Cya... 693 0.0 UniRef50_Q3AX66 DNA helicase/exodeoxyribonuclease V, beta subuni... 693 0.0 UniRef50_A9BB02 Possible UvrD/REP helicase subunit B n=2 Tax=Pro... 688 0.0 UniRef50_Q6FF16 Exonuclease V, beta chain n=2 Tax=Acinetobacter ... 687 0.0 UniRef50_B0RMH9 Exodeoxyribonuclease V beta chain n=8 Tax=Xantho... 677 0.0 UniRef50_A5GLW9 Exodeoxyribonuclease V beta chain n=2 Tax=Synech... 675 0.0 UniRef50_Q46K42 DNA helicase/exodeoxyribonuclease V, beta subuni... 673 0.0 UniRef50_C1SHH7 ATP-dependent exonuclease V beta subunit, helica... 667 0.0 UniRef50_D0SDD3 Exonuclease subunit V n=2 Tax=Acinetobacter RepI... 659 0.0 UniRef50_C6HV35 UvrD/REP helicase n=1 Tax=Leptospirillum ferrodi... 657 0.0 UniRef50_Q7U7R4 Probable exodeoxyribonuclease V, beta subunit Re... 651 0.0 UniRef50_Q6MFB6 Putative exodeoxyribonuclease V beta chain n=1 T... 631 e-179 UniRef50_D1R7X5 Putative uncharacterized protein n=1 Tax=Parachl... 630 e-178 UniRef50_C8NA25 UvrD/REP helicase n=1 Tax=Cardiobacterium homini... 622 e-176 UniRef50_C0ZQ88 Exodeoxyribonuclease V beta chain n=6 Tax=Coryne... 614 e-174 UniRef50_A3ETY5 Putative exodeoxyribonuclease V, beta subunit n=... 603 e-170 UniRef50_A6W6P2 Exodeoxyribonuclease V, beta subunit n=2 Tax=Act... 593 e-167 UniRef50_D0L8X3 Exodeoxyribonuclease V n=1 Tax=Gordonia bronchia... 585 e-165 UniRef50_A5EXI1 Exonuclease V, beta subunit n=1 Tax=Dichelobacte... 584 e-165 UniRef50_Q6A850 Exodeoxyribonuclease V beta chain n=3 Tax=Propio... 581 e-164 UniRef50_A5GUA0 Exodeoxyribonuclease V beta chain n=1 Tax=Synech... 580 e-164 UniRef50_C9RQA8 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succi... 570 e-160 UniRef50_D0LU04 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 559 e-157 UniRef50_P96920 Exodeoxyribonuclease V beta chain n=28 Tax=Actin... 558 e-157 UniRef50_B0SIS6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Lep... 548 e-154 UniRef50_C8PVF0 UvrD/REP helicase n=1 Tax=Enhydrobacter aerosacc... 548 e-154 UniRef50_UPI0001C3224E exodeoxyribonuclease V, beta subunit n=1 ... 543 e-152 UniRef50_D0SSR4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Aci... 541 e-152 UniRef50_Q4FSN0 DNA helicase/exodeoxyribonuclease V, beta subuni... 536 e-150 UniRef50_Q8ERW5 ATP-dependent helicase/nuclease subunit A n=1 Ta... 531 e-149 UniRef50_B9EAN8 Putative uncharacterized protein n=1 Tax=Macroco... 528 e-148 UniRef50_A6LPC4 ATP-dependent helicase/nuclease subunit A n=4 Ta... 527 e-147 UniRef50_B2S0X7 Exodeoxyribonuclease V beta chain n=5 Tax=Borrel... 526 e-147 UniRef50_Q71X99 ATP-dependent helicase/nuclease subunit A n=17 T... 524 e-147 UniRef50_A1HTK7 UvrD-like DNA helicase, C terminal n=1 Tax=Therm... 523 e-146 UniRef50_C8XGW9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Nak... 523 e-146 UniRef50_A2BX90 Possible UvrD/REP helicase subunit B n=7 Tax=Pro... 518 e-145 UniRef50_A0AL18 ATP-dependent helicase/nuclease subunit A n=3 Ta... 517 e-144 UniRef50_Q1WRS0 ATP-dependent helicase/nuclease subunit A n=3 Ta... 511 e-143 UniRef50_A5ZAT8 Putative uncharacterized protein n=1 Tax=Eubacte... 509 e-142 UniRef50_A5D1P3 ATP-dependent helicase/nuclease subunit A n=2 Ta... 508 e-142 UniRef50_Q4L4Y3 ATP-dependent helicase/nuclease subunit A n=65 T... 507 e-141 UniRef50_Q8RCZ0 ATP-dependent helicase/nuclease subunit A n=3 Ta... 505 e-141 UniRef50_Q043G6 ATP-dependent helicase/nuclease subunit A n=25 T... 505 e-141 UniRef50_Q65LJ9 ATP-dependent helicase/nuclease subunit A n=3 Ta... 505 e-141 UniRef50_B1YKM8 ATP-dependent helicase/nuclease subunit A n=1 Ta... 505 e-141 UniRef50_B5CQ86 Putative uncharacterized protein n=1 Tax=Ruminoc... 504 e-141 UniRef50_D2EH37 Recombination helicase AddA n=1 Tax=Pediococcus ... 504 e-141 UniRef50_O51578 Exodeoxyribonuclease V beta chain n=20 Tax=Borre... 503 e-140 UniRef50_Q03D71 ATP-dependent helicase/nuclease subunit A n=1 Ta... 501 e-140 UniRef50_C0Z545 ATP-dependent nuclease subunit A n=1 Tax=Breviba... 501 e-140 UniRef50_B2A610 ATP-dependent helicase/nuclease subunit A n=1 Ta... 497 e-138 UniRef50_Q03NA7 ATP-dependent helicase/nuclease subunit A n=1 Ta... 496 e-138 UniRef50_A8VW69 Phospholipase D/Transphosphatidylase n=1 Tax=Bac... 495 e-138 UniRef50_B0NWV2 Putative uncharacterized protein n=2 Tax=Clostri... 494 e-137 UniRef50_A8U8N0 Exonuclease RexA n=3 Tax=Lactobacillales RepID=A... 493 e-137 UniRef50_C4L3Q8 Recombination helicase AddA n=1 Tax=Exiguobacter... 493 e-137 UniRef50_A6NVW3 Putative uncharacterized protein n=1 Tax=Bactero... 487 e-135 UniRef50_C7GAA3 ATP-dependent nuclease subunit A n=2 Tax=Rosebur... 479 e-133 UniRef50_C8ZW81 UvrD/REP helicase n=4 Tax=Enterococcus RepID=C8Z... 477 e-133 UniRef50_B9XFA1 Recombination helicase AddA n=1 Tax=bacterium El... 477 e-132 UniRef50_A4IKW7 ATP-dependent helicase/nuclease subunit A n=94 T... 476 e-132 UniRef50_Q88U41 ATP-dependent helicase/nuclease subunit A n=3 Ta... 476 e-132 UniRef50_Q9Z7G7 Exodeoxyribonuclease V beta chain n=5 Tax=Chlamy... 473 e-131 UniRef50_C0GDI3 Recombination helicase AddA n=1 Tax=Dethiobacter... 472 e-131 UniRef50_Q3AA35 ATP-dependent helicase/nuclease subunit A n=1 Ta... 470 e-130 UniRef50_D0BK91 ATP-dependent nuclease subunit A n=2 Tax=Granuli... 468 e-130 UniRef50_D1C5W8 UvrD/REP helicase n=1 Tax=Sphaerobacter thermoph... 468 e-130 UniRef50_B3WEJ1 ATP-dependent helicase/nuclease subunit A n=8 Ta... 466 e-129 UniRef50_A7VXH9 Putative uncharacterized protein n=1 Tax=Clostri... 464 e-129 UniRef50_Q04GY7 ATP-dependent helicase/nuclease subunit A n=1 Ta... 462 e-128 UniRef50_C9LTM8 ATP-dependent nuclease subunit A n=1 Tax=Selenom... 461 e-128 UniRef50_C9LAG5 ATP-dependent nuclease subunit A n=1 Tax=Blautia... 458 e-127 UniRef50_C0WLM5 ATP-dependent deoxyribonuclease, subunit A n=3 T... 457 e-127 UniRef50_Q04AN7 ATP-dependent helicase/nuclease subunit A n=3 Ta... 455 e-126 UniRef50_UPI00016C0036 Recombination helicase AddA n=1 Tax=Epulo... 454 e-125 UniRef50_C6CTT6 Recombination helicase AddA n=2 Tax=Firmicutes R... 453 e-125 UniRef50_A3CVM7 UvrD/REP helicase n=1 Tax=Methanoculleus marisni... 452 e-125 UniRef50_C6JEU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 452 e-125 UniRef50_A2RH77 ATP-dependent helicase/nuclease subunit A n=4 Ta... 451 e-125 UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ac... 450 e-124 UniRef50_B2KE90 UvrD/REP helicase n=1 Tax=Elusimicrobium minutum... 450 e-124 UniRef50_Q04UR1 Exodeoxyribonuclease V, beta chain n=4 Tax=Lepto... 449 e-124 UniRef50_UPI0001C4301D ATP-dependent nuclease subunit A n=1 Tax=... 446 e-123 UniRef50_B1MZM2 ATP-dependent helicase/nuclease subunit A n=3 Ta... 443 e-122 UniRef50_C9KJP8 ATP-dependent nuclease subunit A n=1 Tax=Mitsuok... 443 e-122 UniRef50_Q0AXU8 ATP-dependent helicase/nuclease subunit A n=1 Ta... 442 e-122 UniRef50_A6CDV1 UvrD/REP helicase n=1 Tax=Planctomyces maris DSM... 439 e-121 UniRef50_D1BPN9 Recombination helicase AddA n=3 Tax=Veillonella ... 439 e-121 UniRef50_UPI0001BC38AF DNA helicase II / ATP-dependent DNA helic... 438 e-121 UniRef50_UPI0001C36633 recombination helicase AddA n=1 Tax=Clost... 438 e-121 UniRef50_B1C9D6 Putative uncharacterized protein n=1 Tax=Anaerof... 437 e-120 UniRef50_Q2VZK9 ATP-dependent exoDNAse beta subunit n=4 Tax=Alph... 435 e-120 UniRef50_Q2FNI4 UvrD/REP helicase n=1 Tax=Methanospirillum hunga... 435 e-120 UniRef50_C4V2E5 ATP-dependent deoxyribonuclease subunit A n=2 Ta... 434 e-120 UniRef50_Q16CX8 ATP-dependent DNA nuclease, putative n=31 Tax=Pr... 434 e-119 UniRef50_D2MLK1 DNA helicase, UvrD/REP type n=1 Tax=Candidatus P... 432 e-119 UniRef50_Q13F62 UvrD/REP helicase n=3 Tax=Alphaproteobacteria Re... 432 e-119 UniRef50_B0PD60 Putative uncharacterized protein n=1 Tax=Anaerot... 431 e-119 UniRef50_C4G1J5 Putative uncharacterized protein n=1 Tax=Abiotro... 430 e-118 UniRef50_Q1Q4K9 Similar to ATP-dependent DNA helicase subunit Ad... 429 e-118 UniRef50_D1PLS3 ATP-dependent deoxyribonuclease subunit A n=1 Ta... 429 e-118 UniRef50_C0EHH1 Putative uncharacterized protein n=1 Tax=Clostri... 428 e-118 UniRef50_C8S137 Double-strand break repair helicase AddA n=1 Tax... 428 e-118 UniRef50_B0RA36 Putative helicase n=1 Tax=Halobacterium salinaru... 428 e-118 UniRef50_A7HPC8 Double-strand break repair helicase AddA n=1 Tax... 427 e-117 UniRef50_A6WGC8 UvrD/REP helicase n=1 Tax=Kineococcus radiotoler... 427 e-117 UniRef50_UPI0001C314BB UvrD/REP helicase n=1 Tax=Conexibacter wo... 425 e-117 UniRef50_B8GTW0 UvrD/REP helicase n=1 Tax=Thioalkalivibrio sp. H... 425 e-117 UniRef50_A7VJ43 Putative uncharacterized protein n=1 Tax=Clostri... 425 e-117 UniRef50_Q1GCN8 ATP-dependent nuclease subunit A n=11 Tax=Rhodob... 424 e-117 UniRef50_A8SJB2 Putative uncharacterized protein n=1 Tax=Parvimo... 423 e-116 UniRef50_D2RKU1 Exodeoxyribonuclease V n=1 Tax=Acidaminococcus f... 422 e-116 UniRef50_Q5GTB1 ATP-dependent exoDNAse (Exonuclease V) beta subu... 419 e-115 UniRef50_C7RGF9 UvrD/REP helicase n=3 Tax=Anaerococcus RepID=C7R... 419 e-115 UniRef50_C8WQE1 UvrD/REP helicase n=1 Tax=Alicyclobacillus acido... 419 e-115 UniRef50_B0CJK2 Double-strand break repair helicase AddA n=35 Ta... 419 e-115 UniRef50_Q0G5V0 Helicase, UvrD/Rep family protein n=2 Tax=Aurant... 418 e-115 UniRef50_Q0FE31 ATP-dependent DNA helicase, UvrD/Rep family prot... 418 e-115 UniRef50_A4BQ40 Possible ATP-dependent exodeoxyribonuclease subu... 417 e-114 UniRef50_B9R0C4 Double-strand break repair helicase AddA n=1 Tax... 416 e-114 UniRef50_C7HA04 ATP-dependent exoDNAse beta subunit n=1 Tax=Faec... 415 e-114 UniRef50_A2ST33 UvrD/REP helicase n=1 Tax=Methanocorpusculum lab... 415 e-114 UniRef50_B2A860 UvrD/REP helicase n=1 Tax=Natranaerobius thermop... 415 e-114 UniRef50_A7IJM3 UvrD/REP helicase n=12 Tax=Alphaproteobacteria R... 415 e-114 UniRef50_Q38X69 ATP-dependent helicase/nuclease subunit A n=1 Ta... 415 e-114 UniRef50_C0GCZ7 UvrD/REP helicase n=1 Tax=Dethiobacter alkaliphi... 414 e-113 Sequences not found previously or not previously below threshold: UniRef50_B7GM51 ATP-dependent helicase/nuclease subunit A n=1 Ta... 515 e-144 UniRef50_A3DH19 ATP-dependent helicase/nuclease subunit A n=7 Ta... 509 e-142 UniRef50_B9DZK4 ATP-dependent helicase/nuclease subunit A n=13 T... 488 e-136 UniRef50_A5KIK3 Putative uncharacterized protein n=2 Tax=Ruminoc... 488 e-136 UniRef50_B1HN90 ATP-dependent helicase/nuclease subunit A n=2 Ta... 482 e-134 UniRef50_B1I493 ATP-dependent helicase/nuclease subunit A n=1 Ta... 478 e-133 UniRef50_A6BJ96 Putative uncharacterized protein n=5 Tax=Clostri... 476 e-132 UniRef50_C0BDK3 Putative uncharacterized protein n=1 Tax=Coproco... 475 e-132 UniRef50_Q0TV46 ATP-dependent helicase/nuclease subunit A n=12 T... 475 e-132 UniRef50_B6G1B8 Putative uncharacterized protein n=1 Tax=Clostri... 474 e-131 UniRef50_Q836J8 ATP-dependent helicase/nuclease subunit A n=35 T... 471 e-131 UniRef50_A5HYY0 ATP-dependent helicase/nuclease subunit A n=11 T... 470 e-130 UniRef50_Q18AN9 ATP-dependent helicase/nuclease subunit A n=7 Ta... 469 e-130 UniRef50_C6LH77 ATP-dependent nuclease subunit A n=1 Tax=Bryante... 464 e-129 UniRef50_A6TVN2 ATP-dependent helicase/nuclease subunit A n=2 Ta... 461 e-128 UniRef50_C4Z991 DNA helicase II n=1 Tax=Eubacterium rectale ATCC... 460 e-127 UniRef50_UPI00019738F0 recombination helicase AddA n=1 Tax=Clost... 457 e-126 UniRef50_A5ZW44 Putative uncharacterized protein n=2 Tax=Clostri... 448 e-124 UniRef50_C4Z484 DNA helicase II / ATP-dependent DNA helicase Pcr... 448 e-124 UniRef50_C4G8V9 Putative uncharacterized protein n=1 Tax=Shuttle... 443 e-122 UniRef50_C0EV13 Putative uncharacterized protein n=1 Tax=Eubacte... 440 e-121 UniRef50_C7XXL2 Recombination helicase AddA n=1 Tax=Lactobacillu... 437 e-120 UniRef50_C0FS43 Putative uncharacterized protein n=1 Tax=Rosebur... 424 e-116 UniRef50_UPI0001C37CA2 recombination helicase AddA n=1 Tax=Rumin... 416 e-114 UniRef50_B2GEY4 ATP-dependent helicase/nuclease subunit A n=3 Ta... 414 e-113 UniRef50_C5RQN8 Recombination helicase AddA n=1 Tax=Clostridium ... 413 e-113 >UniRef50_P08394 Exodeoxyribonuclease V beta chain n=100 Tax=Enterobacteriaceae RepID=EX5B_ECOLI Length = 1180 Score = 1665 bits (4312), Expect = 0.0, Method: Composition-based stats. Identities = 1180/1180 (100%), Positives = 1180/1180 (100%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL Sbjct: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ Sbjct: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA Sbjct: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV Sbjct: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA Sbjct: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS Sbjct: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY Sbjct: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS Sbjct: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 Query: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL Sbjct: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL Sbjct: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM Sbjct: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS Sbjct: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL Sbjct: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 Query: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR Sbjct: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN Sbjct: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE Sbjct: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 Query: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE Sbjct: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD Sbjct: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY Sbjct: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA Sbjct: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 >UniRef50_A4TLB8 DNA helicase/exodeoxyribonuclease V, beta subunit n=80 Tax=cellular organisms RepID=A4TLB8_YERPP Length = 1220 Score = 1352 bits (3499), Expect = 0.0, Method: Composition-based stats. Identities = 738/1202 (61%), Positives = 906/1202 (75%), Gaps = 23/1202 (1%) Query: 1 MSDV-AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + L+PL LPL GERLIEASAGTGKTFTI LYLRLLLGLGG AAF RPL VEE+ Sbjct: 1 MTPTTPQRLEPLALPLYGERLIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRRPLMVEEI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 LVVTFTEAAT ELRGRIR NIH LRIAC+R +D+P+Y+ LL EI D A AA LL AER Sbjct: 61 LVVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPMYQALLAEITDWAVAAAQLLAAER 120 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 QMDEAA++TIHGFCQRML NAFESG+LFEQ L++DE L QACADFWRRHCYPLP I Sbjct: 121 QMDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELPLWRQACADFWRRHCYPLPLVI 180 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 A+ V + W GP+ALL D++ YLQGE P + P DDET+ SRH +V +ID +K +WR A Sbjct: 181 ARAVSQEWSGPEALLSDLSAYLQGETPKFRQAPGDDETILSRHQHVVTQIDALKAEWRLA 240 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 EL+ALI SG+D+R ++ + W++K+ WAE+ET YQLP+ LEKF Q L ++TK Sbjct: 241 APELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPKELEKFRQSVLLEKTK 300 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 G P+H LF AID + +PL++RDL++ RA++EIR +V +EKR+R ELGFDD+LS+LD Sbjct: 301 KGA-APQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSVQQEKRQRAELGFDDLLSKLD 359 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 +AL+ GE+LA +IRTR+PVAMIDEFQDTDPQQYRIF ++ Q ALLLIGDPKQAI Sbjct: 360 AALQQSGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTVYGGQEACALLLIGDPKQAI 419 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 YAFRGADIFTY++ARSEV AHYTL+TNWRS+ MV SVN+LFS + F+F +IPFI V Sbjct: 420 YAFRGADIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNRLFSLVNTPFLFEQIPFINVA 479 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 +A KN L F KGE QPA+ WL G+ GV +YQ MA+ CAAQIRDWL AGQ+G+A Sbjct: 480 AAKKNHDLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAE 539 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 L+ +PV+ASDI++LVRSR EAA +RDAL+ L IPSVYLSNRDSVFET EA+++LWL Sbjct: 540 LLTTKGPKPVQASDITILVRSRAEAALIRDALSALAIPSVYLSNRDSVFETTEAKDLLWL 599 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 LQAV+ PE+E LRSA+AT ++GL+A ++ LN+DE AWD +V+EFD YRQ W++RGV+P Sbjct: 600 LQAVLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQRRGVLP 659 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 MLR +M+ R++AENLLAT GGERRLTD+LH+ ELLQEA +QL+SEHAL+RWL+Q I +P+ Sbjct: 660 MLREMMARRHLAENLLATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPN 719 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD 779 + SQQ+RLESD+HLV++VTIHKSKGLEYPLVWLPFI NFR Q+ YHDRHSFEA+LD Sbjct: 720 PQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEALLD 779 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 LNA ES LAE ERLAEDLRLLYVALTRSV+HCS+G+APL++ K+G++D+H+SALG Sbjct: 780 LNADEESQALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQGESDMHRSALG 839 Query: 840 RLLQKGEPQDAAGLRTCIEALC---DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 L+Q G+P DA L + L + DI + D++PWQ + EL A+ R Sbjct: 840 YLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEPPDDKPWQPQPEALPELTARHFTRK 899 Query: 897 PGDNWRVTSYSGLQQRGH-----------------GIAQDLMPRLDVDAAGVASVVEEPT 939 D WRVTSYSGLQQ G Q L+PRLD+DA G +VV E Sbjct: 900 MQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGAPLQVLLPRLDIDAVGEQAVVTEDD 959 Query: 940 -LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVL 998 LTPH FPRGA+PGTFLH L E LDF+QP++ W+ E+L+ GF QW PVL +W+ ++ Sbjct: 960 HLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLSERLQQQGFSEQWAPVLHQWLNDIV 1019 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 Q PL +TG +L+ LS KQ E++FYLPI L A LD LI+Q+DPLS CP L+F QV Sbjct: 1020 QTPLTDTGATLAGLSPERKQAELQFYLPIDSLLRAEVLDRLIKQYDPLSRQCPVLDFQQV 1079 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 RGMLKGFIDLVF +G+YYLLDYKSNWLGEDS AYT +AM AM HRYDLQYQLYTLAL Sbjct: 1080 RGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAMTQAMAEHRYDLQYQLYTLAL 1139 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 HRYLRHR+ADYDY+ HFGGVIYLFLRGVD++H GI+ RP LI MD +F+G Sbjct: 1140 HRYLRHRLADYDYQRHFGGVIYLFLRGVDQQHSGHGIFNCRPEQKLIEEMDRLFSGTIGS 1199 Query: 1179 EA 1180 A Sbjct: 1200 NA 1201 >UniRef50_C5BH93 Exodeoxyribonuclease V, beta subunit, putative n=12 Tax=Enterobacteriaceae RepID=C5BH93_EDWI9 Length = 1199 Score = 1285 bits (3325), Expect = 0.0, Method: Composition-based stats. Identities = 701/1186 (59%), Positives = 865/1186 (72%), Gaps = 8/1186 (0%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M +TLDPL LPL G RLIEASAGTGKTFT+AALYLRLLLGLG A+PRPL VEE+L Sbjct: 13 MPMPTQTLDPLTLPLYGARLIEASAGTGKTFTLAALYLRLLLGLGEENAYPRPLAVEEIL 72 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELRGRIRSNIH LR+ACLR +D+PL LL +I D+A AA LL AERQ Sbjct: 73 VVTFTEAATEELRGRIRSNIHALRLACLRGESDHPLLTDLLAQIADQALAASLLLAAERQ 132 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA++TIHGFCQRML+ NAFESG+LF+Q L++DE LR QACADFWRRHCYPL ++A Sbjct: 133 MDEAAIYTIHGFCQRMLSHNAFESGVLFQQTLLQDELPLRRQACADFWRRHCYPLSADLA 192 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + V + W GP+ALL ++ YL GE P+++ P ETLA RH ++ARI+ VK WR+ Sbjct: 193 EAVSQLWSGPEALLAELQPYLSGEMPLLRPAPDAQETLAQRHQVLLARIERVKATWREHE 252 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 ++ LI +SG+D+R ++ KW+D++S WA+ E+ YQLP ++ +F+Q L ++T Sbjct: 253 HQVVGLIAASGVDKRSYSSRYLPKWLDEMSVWAQAESRDYQLPSAIARFAQATLLEKTSK 312 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 G E PRH +F I+ LLAEPLS+RDLV+ RAL EIR+ V EKRRR ELGFDD+L+RLD Sbjct: 313 G-EPPRHSVFTEIESLLAEPLSLRDLVLARALGEIRDGVQLEKRRRAELGFDDLLTRLDQ 371 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP----ETALLLIGDPK 416 AL G LAAAIR R+PVAMIDEFQDTDP QYRIF+RI+ ETALLLIGDPK Sbjct: 372 ALGGAGGAALAAAIRQRYPVAMIDEFQDTDPLQYRIFQRIYTADDARSSETALLLIGDPK 431 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI 476 QAIYAFRGADIFTY++AR+ V A YTL+TNWRSAPG+V +VN LF + + F+F EIPF+ Sbjct: 432 QAIYAFRGADIFTYLRARAAVDACYTLETNWRSAPGVVQAVNALFLRLEAPFLFAEIPFL 491 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 PV SA N R GE Q AM +WL + C +Y TMA+ CAAQIRDWL AGQRG Sbjct: 492 PVASAAANAGRRLTIDGEPQSAMALWLYDVPGCTAQEYLQTMARCCAAQIRDWLSAGQRG 551 Query: 537 EALLMNGDDA---RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 A L GDD R + A+D+++LVRSR EA +RDAL+ L IPSVYLSNRDSVF T EA Sbjct: 552 TARLTGGDDGKAGRALCAADMTILVRSRHEATVMRDALSALNIPSVYLSNRDSVFSTPEA 611 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWR 653 +++LWLLQA++TP + TLRSALA ++GL+A ++ L+ DE WD VV+EFDGYR+ W+ Sbjct: 612 RDLLWLLQAILTPAQSRTLRSALAVGLLGLDAAALDALSQDERRWDAVVDEFDGYRRQWQ 671 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 +RGV+PMLR L+ R +AENLLATAGGERRLTD+LH+ ELLQEA QL+SE ALVRWL+Q Sbjct: 672 RRGVLPMLRELIGRRRLAENLLATAGGERRLTDVLHLGELLQEAAAQLDSEPALVRWLAQ 731 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 773 I P A SQQMRLESD+HLVQ++TIHKSKGLE+PLV+LPF+ FR Q Q YHDR + Sbjct: 732 QIDSPQPQAESQQMRLESDRHLVQVITIHKSKGLEFPLVFLPFVATFRRQRQGLYHDRVT 791 Query: 774 FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 833 +AVLDL A +++ LA+ ERLAEDLRLLYVA+TR+V+HC+LG+APLV K+ ++D+ Sbjct: 792 HQAVLDLCADDDALALADQERLAEDLRLLYVAVTRAVYHCALGIAPLVSGNRRKQDESDL 851 Query: 834 HQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL 893 H A+G LLQ+ E DA GL+ ++ L +D I + + PWQ V L A+ Sbjct: 852 HHGAIGYLLQRAEACDAEGLKQALQTLSNDPIHLEILSPCEGTPWQAEPVPPRALCARRF 911 Query: 894 QRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGT 953 R D+WRVTSYS LQQ G +L+PRLD+DAAG + H FPRGA+PGT Sbjct: 912 TRRLQDDWRVTSYSALQQHGGSTYLELLPRLDIDAAGENRTAAATIFSAHTFPRGAAPGT 971 Query: 954 FLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLS 1013 FLH L E LDF DP W+ E+ G + W P L +W+T +LQ PL+E+G++LS L+ Sbjct: 972 FLHDLLEKLDFAAAPDPVWLAEQCLAQGIDLAWVPTLAQWLTQILQTPLDESGLTLSHLA 1031 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 +Q E++FYLPI+ PL A LD LIR+ D LSA C L F QV GMLKGFIDLVF H Sbjct: 1032 PSQRQPELQFYLPIARPLRAEALDALIRRHDALSAQCEALAFSQVEGMLKGFIDLVFCHR 1091 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 GRYYLLDYKSNWLGED +AYT AMAAAM AHRYDLQYQLYTLALHRYLRHR+ DYDY+ Sbjct: 1092 GRYYLLDYKSNWLGEDRAAYTPPAMAAAMIAHRYDLQYQLYTLALHRYLRHRLVDYDYQR 1151 Query: 1134 HFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 HFGGV Y FLRG+ P QG++ RP L+ +D +FAG + Sbjct: 1152 HFGGVFYCFLRGMAGVEPGQGVFACRPEEALVTALDALFAGEQEDG 1197 >UniRef50_A7K3N4 Exodeoxyribonuclease V, beta subunit n=67 Tax=Gammaproteobacteria RepID=A7K3N4_VIBSE Length = 1227 Score = 1222 bits (3162), Expect = 0.0, Method: Composition-based stats. Identities = 563/1199 (46%), Positives = 775/1199 (64%), Gaps = 30/1199 (2%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPR-PLTVEELLVVT 63 L+P+ PL G RLIEASAGTGKTFTIA LYLRLLLG G + R PLTV+++LVVT Sbjct: 22 PTPLEPMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVT 81 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FTEAATAELR RIR+ IH+ RIA R + +P+ + LL E DD QAA+ LL AERQMDE Sbjct: 82 FTEAATAELRDRIRARIHDARIAFARGQSSDPVIQPLLNEFDDHKQAAEILLQAERQMDE 141 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 AAV+TIHGFCQRML NAFESG F + + DES L+ Q AD+WRR+ YPLP +A + Sbjct: 142 AAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKSQVVADYWRRNFYPLPFTLAGEI 201 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 + W P ALL DI+ YL G AP+ + P +LA H + + +ID +K QWR++ + Sbjct: 202 RQLWGSPSALLSDISNYLTG-APLSLSVPAMKGSLADLHTENLKKIDELKAQWRESQDDF 260 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 LI S I++R + + + W++ ++AWA ET Y P+ LEKF+Q L ++T G Sbjct: 261 LTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEKTPKG-S 319 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 P+H +FEAI+ LA P+S++ ++ A+ R +A K ++ L FDD+L++L +++ Sbjct: 320 APQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQLSASID 379 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 ++ E+LAA IRT +PVAMIDEFQDTDP QY IF RI+ + PE L +IGDPKQAIY FR Sbjct: 380 TDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNNPECGLFMIGDPKQAIYGFR 439 Query: 424 GADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-REIPFIPVKSAG 482 GADIFTY+KAR++V AHYTL TNWRS+ MV +VN++F+ D F++ +IPF+PVK + Sbjct: 440 GADIFTYIKARNQVSAHYTLGTNWRSSADMVQAVNQVFALPDSPFIYDSDIPFLPVKYSP 499 Query: 483 KNQALRFVFKGETQPAMKMWLMEGES--CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 + + G+ QPA+ WL E + G+Y + MA+ A+QI+ L Q+G+A L Sbjct: 500 NAEKRIWTMGGQKQPALTYWLQEADDKPLPKGEYLTRMAEATASQIQTILTQAQQGQACL 559 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 +NG+ + V+A DI+VLVR+ E ++ AL I SVYLSNRDSVF + AQ++ LL Sbjct: 560 VNGEKQKAVQAGDIAVLVRTGSEGRMIKQALADQGIASVYLSNRDSVFTSSVAQDLQRLL 619 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 QAV+TPE + LR++LA+ + L+A ++ LNNDE W+ V EF YR++W +RGV+PM Sbjct: 620 QAVLTPENDRALRASLASELFALDAASLDALNNDEVVWENAVNEFKEYRKLWVQRGVLPM 679 Query: 661 LRALMSARNIAENLLAT------AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQH 714 LRA++S R+IAE LL GER LTD++HI ELLQ+A +L+S+H L+RWL+Q Sbjct: 680 LRAVISKRHIAERLLEEGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQS 739 Query: 715 ILEPDS---NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR 771 I + ++ + Q RLES+++LVQIVTIHKSKGLEY LV+LPF+ ++R +A Y+D Sbjct: 740 ISDAENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFSYREASEAKYYDA 799 Query: 772 HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831 + VLD+ S+ A+ ERLAEDLRL+YVALTR+V+ C +G +PL R K+ T Sbjct: 800 ANDRTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEP-T 858 Query: 832 DVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN--QPWQVNDVSTAELN 889 VH+SA+G L+Q G+ L + D+ A + + +L+ Sbjct: 859 GVHRSAIGYLIQNGQEGGINDLHQGLTQQQDELDCVVVADPPQQLEEKYVAPQEEIHDLS 918 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP------RLDVDAAGVASVVEEPTLTPH 943 AK LQ NWR+TSYSGL ++G A+ +D + + EP + Sbjct: 919 AKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLLEPERSIF 978 Query: 944 QFPRGASPGTFLHSLFEDLDFTQPVDPNW----VREKLELGGFESQWEPVLTEWITAVLQ 999 FPRGA PGTFLHSLFE+++FTQP + +E + +W P+L + I VL Sbjct: 979 TFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLA 1038 Query: 1000 APLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVR 1059 PL+ + L+Q + + VEMEF LPI E L A L+ +I++ DPLSA L F V+ Sbjct: 1039 TPLDGKSLLLNQKAPSQRLVEMEFLLPI-EVLSAPALNRVIQRHDPLSAKAGDLGFQTVQ 1097 Query: 1060 GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 GMLKGFIDLVF H+G+YY+LD+KSN LG+D ++Y +A+ +AM HRYDLQYQ+Y LALH Sbjct: 1098 GMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALALH 1157 Query: 1120 RYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 R+LR R+A+Y YE HFGGV YLFLRG+D + GI+ +P + MD + G LE Sbjct: 1158 RFLRSRLANYQYEQHFGGVYYLFLRGMDGQS-DHGIFAAKPTLEFLQEMDRLIDGQVLE 1215 >UniRef50_C4L7B3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B3_TOLAT Length = 1175 Score = 1143 bits (2956), Expect = 0.0, Method: Composition-based stats. Identities = 549/1186 (46%), Positives = 732/1186 (61%), Gaps = 33/1186 (2%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVV 62 ++ LD L PL G RLIEASAGTGKT+TIA LYLRLLLG G G AAF PL V+ +LVV Sbjct: 1 MSIPLDILTFPLGGLRLIEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVV 60 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFTEAATAELR RI I + R A +D+ L + L+ E D+ A + LL AERQMD Sbjct: 61 TFTEAATAELRQRILKAIRDTRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA++TIHGFCQRML NAFESG LF+ + + +E LR A ADFWR Y +AQ Sbjct: 121 EAAIYTIHGFCQRMLTQNAFESGSLFDNEFLTEEQTLRAGAVADFWRHITYQADALLAQA 180 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 + + WKGP+ LLR+I+ +L ++ P ETLA RH I++R++ ++ W+ A GE Sbjct: 181 LLDHWKGPEDLLREISPHLA--LSGLQCQPRTAETLAERHQAIISRLNMFREAWQAAAGE 238 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 L++LI S +D+R +++ N W+ K+ W +SY LP+ L +F+ L ++K+G Sbjct: 239 LESLISGSDVDKRSYSKKNLPNWLQKVGDWVNAPLSSYSLPKELSRFAGNELAAKSKSG- 297 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362 P HPLF I+ LLA+P I D+VI AL ++R + ++K R+ +L FDD+L+ L AL Sbjct: 298 TVPSHPLFAQIETLLAQPNDIDDVVIADALTQVRARLQQQKLRQQQLSFDDLLTNLARAL 357 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF 422 SE G +LA IR ++PVAMIDEFQDTDP QY+IF ++ H PE +IGDPKQAIYAF Sbjct: 358 NSERGVLLAERIREQYPVAMIDEFQDTDPLQYQIFSTLYAHNPECGFYMIGDPKQAIYAF 417 Query: 423 RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSA 481 RGADIFTYM+A+ +V AHYTL TN+RS +V +VN LF+ + F+++ +IPF V++ Sbjct: 418 RGADIFTYMQAKQQVAAHYTLQTNFRSTDELVTAVNALFAHSGAPFIYQQDIPFEAVRAK 477 Query: 482 GKNQALRFVFKGETQPAMKMWL-MEGE-SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 GK FV +G Q A++ +EG YQ MA AAQI WL Q+ +A Sbjct: 478 GKKAG--FVLQGLPQTALQCCFPLEGTGEVSGAAYQQRMALAAAAQIHTWLVGAQQQQAT 535 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 L D +P+R +DI+VLVRS +EAA ++ AL I SVYLSNR+SVF AQ++ L Sbjct: 536 L----DGKPLRPNDIAVLVRSGREAAVMQQALRECGIASVYLSNRESVFAQAVAQDVARL 591 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 L+A + P+ E +R+A+AT + G + LN+DE W+ VE ++WR RG++P Sbjct: 592 LEACLNPQDEMLIRAAMATGLQGWTVSQLARLNDDETLWEQTVEHIRLAGELWRNRGILP 651 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 MLR + I E LLA GER+LTD+LH+ ELLQ A + L EHAL+RWL + +P+ Sbjct: 652 MLRQWLFWYQIPERLLADTNGERQLTDVLHLGELLQTAASTLNGEHALLRWLLERCHQPN 711 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD 779 +A QQ+RL+S++ VQIVTIHKSKGL+Y LV LPFI +R + YH + + LD Sbjct: 712 GDADEQQLRLDSERQRVQIVTIHKSKGLQYGLVLLPFICAYRGNDMPRYHTGNGVQ--LD 769 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 L + + + A ERLAEDLRLLYVALTR V+ LG+A L K D +AL Sbjct: 770 LTGSEHAWEKAAEERLAEDLRLLYVALTRGVFVTWLGLADLKINSKTKAKDD--RPAALD 827 Query: 840 RLLQKGEPQD-AAGLRTCIEALCDDDIAWQTAQTGDNQ-PWQVNDVSTAELNAKTLQRLP 897 LL+ R ++ L + D A + A+ Q P+ V A+ Sbjct: 828 YLLKNDSDSALTVRFRQWLQQLNNHDRAAEVAEIAFPQTPYHEISVPLPAPQARHFSGQL 887 Query: 898 GDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHS 957 NWRVTSYS L H Q P + + P FPRGA GTFLHS Sbjct: 888 ERNWRVTSYSALT-VSHSTYQPTPP---LPVVVSDEEPQAPRFDVFSFPRGAHAGTFLHS 943 Query: 958 LFEDLDF--TQPVDPNWVREKLELGGF-----ESQWEPVLTEWITAVLQAPLNETGVSLS 1010 L EDLDF W+ E L+ W+PVL +W+T +L + L G+SLS Sbjct: 944 LLEDLDFGADDAFCRKWITEHLQGVQLSHDWQPEPWQPVLEQWLTQILNSEL-FPGLSLS 1002 Query: 1011 QLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVF 1070 QL+ + EMEF LP++ PL A L+ + D LSA PPL F +V+GMLKGFIDLVF Sbjct: 1003 QLTPQQCLSEMEFLLPLA-PLSAPALNRCLAAGDALSANAPPLAFNEVQGMLKGFIDLVF 1061 Query: 1071 RHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYD 1130 H+GR+Y++DYKSN+LG++ +AY Q AMA AM HRYD+QYQLYTLALHRYLR R+ DYD Sbjct: 1062 EHQGRFYVVDYKSNYLGDNPAAYQQDAMAQAMLEHRYDVQYQLYTLALHRYLRCRLPDYD 1121 Query: 1131 YEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 YE H GGV YLFLRG++ + G+Y T+P+ IA +D +FAG + Sbjct: 1122 YERHIGGVCYLFLRGMNGD-AGSGVYATKPDKQHIAALDALFAGQS 1166 >UniRef50_Q493D5 Exonuclease V n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493D5_BLOPB Length = 1187 Score = 1117 bits (2889), Expect = 0.0, Method: Composition-based stats. Identities = 490/1185 (41%), Positives = 730/1185 (61%), Gaps = 14/1185 (1%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 L+ L LPL G LIEASAGTGKT+T+ +Y+RLLL LG + F RPLTV+E+LVVTFT Sbjct: 2 RNLNVLELPLYGINLIEASAGTGKTYTLIIIYIRLLLCLGNRSDFSRPLTVKEILVVTFT 61 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 ++A ELR RIR NIH+ R+ C+R + N L+ +LL +I + A L AE+++++A+ Sbjct: 62 KSAVRELRHRIRENIHQFRLDCMRGYSHNFLFSKLLLQIHNVELAINQLSEAEKKINQAS 121 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIH FCQ +LN N E MLF ++++E++L QAC DFWRR+ Y LP IA+++ E Sbjct: 122 IFTIHSFCQNILNHNTIELNMLFNTNIVDNETILYQQACTDFWRRNFYSLPLNIARLIQE 181 Query: 186 TWKGPQALLRDINRYLQGEAPVIKA----PPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 WK P +LL DI Y+ + D +++ + + +I+ ++ VK++W Sbjct: 182 YWKDPNSLLNDIIPYIYRARSNLDCYNHNVHEDKKSIITYYEKILDHVNHVKKEWLKNKH 241 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 + ++ S I+RR +N+SN +WID+I+ W + T + P L++F L+ + Sbjct: 242 NIITILNSYDINRRIYNKSNLIRWIDRINQWVKRPTIDHTTPNDLQRFRTTELKIHNNSN 301 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 LF+++++L ++ S + + A+ EI + + R E+ +D++ L Sbjct: 302 KSDYICTLFDSVEKLYSQLSSFKTSIFKIAINEIHNDLNNTQHYRSEITLNDLVDVLAHH 361 Query: 362 LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421 L + LA +RTR+PV +IDEFQDTD QQ++IF +++ E L+LIGDPKQ+IYA Sbjct: 362 LVKDKDNKLAHILRTRYPVTLIDEFQDTDCQQFKIFSTLYNSDSENGLILIGDPKQSIYA 421 Query: 422 FRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA 481 FRGADIF+YMK R V Y L+ NWRS+ +VN+VN+LF + F+F +IPFIP +A Sbjct: 422 FRGADIFSYMKIRRTVCNKYNLNINWRSSLNIVNAVNQLFQLVSNPFIFEDIPFIPSVTA 481 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 +N RF+ ++Q AM WL E +GDY+ +MAQ CA + + L + G A L Sbjct: 482 SRNSMYRFLINNQSQTAMCFWLHPDEIVTIGDYKRSMAQECATILYNLLHEIRNGTAWLE 541 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 N R + SDI+VLVR+ +EA+ + AL+ + I +V+LSN ++FET+E+ E+ LL+ Sbjct: 542 NDKYKRKLEISDITVLVRNHEEASLICSALSKVNISTVFLSNHKNIFETMESYELSLLLR 601 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A++ PE +T+ +AL T GLNA DIE++NN+E + + E+F Y +W+K+GV M+ Sbjct: 602 AILFPE-SHTICTALTTVFFGLNATDIESINNNESKQERIFEKFFEYYSVWKKKGVYLMI 660 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 + ++ + E LL+T GE L +ILH+ ELLQ+A QL+ EHAL+ WL I +P + Sbjct: 661 QKVIFDHKVPEKLLSTRVGESSLINILHLGELLQDAARQLQDEHALMEWLILKITQPKNK 720 Query: 722 ASSQQ-MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 +S Q +RL SD L++I TIHKSKGLE+PL++LPFI +F + F+HDR S++ L+ Sbjct: 721 KTSDQNLRLGSDHQLIKISTIHKSKGLEFPLIFLPFIADFNYVKNPFFHDRKSYKTHLNF 780 Query: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG-DTDVHQSALG 839 N + + LA+ ERL+EDLRLLYVA+TRS++HCS+G+ P+VRR K + D+H SALG Sbjct: 781 NTSKSHLTLADEERLSEDLRLLYVAVTRSIYHCSIGIGPIVRRYKKKSNTNNDLHHSALG 840 Query: 840 RLLQKGEPQDAAGLRTCIEAL---CDDDIAWQTAQTGDNQPWQVNDVST-AELNAKTLQR 895 L+QK +AA L+ ++ L + DI+++ + V++ L K + Sbjct: 841 YLIQKKTSGNAATLKKHLKKLSVYSNGDISFRIISKSQELFSHASSVASNQLLCGKKWKT 900 Query: 896 LPGD-NWRVTSYSGLQQRGHGIAQDLMPRLDVD-AAGVASVVEEPTLTPHQFPRGASPGT 953 P W +TS+S LQ G+ L +D + + S E LTPH FP+G G+ Sbjct: 901 SPNVIPWSITSFSALQHTDVGVTTYLNLEKQLDISEHIQSQENEIPLTPHTFPKGKVCGS 960 Query: 954 FLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLS 1013 F HS+F+ LDF + VD W+ +E + W V+ EWI VL PLN ++L+Q+ Sbjct: 961 FFHSIFQVLDFRKLVDMKWLYAHMERYNIDPIWGFVVREWIYIVLNTPLNN-NLTLAQII 1019 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 NK+ E++FYL I+ L + +LD L +++DP+S L F+ + GMLKGFIDL+FR Sbjct: 1020 PENKKTELKFYLSINTYLTSEELDHLCKKYDPVSRKSSSLTFLDITGMLKGFIDLIFRWN 1079 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 RYYLLDYK+NWLG+++ Y + M H Y LQYQLYTLALHR+LR+R+ Y+YE Sbjct: 1080 HRYYLLDYKTNWLGDNNKDYVGSKIRQEMIKHHYALQYQLYTLALHRFLRNRLVSYNYEK 1139 Query: 1134 HFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 FGGV YLF+RG+D GIY RP + I +D +F+ L Sbjct: 1140 DFGGVYYLFIRGMDGTPLSNGIYFFRPLSTFINKLDNLFSKNNLN 1184 >UniRef50_Q2BKD8 ATP-dependent exoDNAse beta subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKD8_9GAMM Length = 1179 Score = 1108 bits (2867), Expect = 0.0, Method: Composition-based stats. Identities = 517/1203 (42%), Positives = 734/1203 (61%), Gaps = 50/1203 (4%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V LDPL PL G++LIEASAGTGKT+TI A L L L LG +PL +++L Sbjct: 1 MTKV-HALDPLTFPLVGQQLIEASAGTGKTYTITA--LYLRLLLGLGQVGDKPLGPDQIL 57 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELR RIR I + R + L + +P L +++D AQA + L A RQ Sbjct: 58 VVTFTEAATEELRDRIRQRIVDARNSFLTDQVSDPFLAALKAQVNDIAQAVKLLDQAIRQ 117 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTIHGFCQRML +AFESG LF+ +L +D+ L A D+WR + YP+ +A Sbjct: 118 MDEAAIFTIHGFCQRMLKRHAFESGSLFDTELTQDDQSLVRSAVLDYWRNNIYPMQGAVA 177 Query: 181 QVVFET-WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 +VF W+ P+ L+ D+ + + + P L + + + ++ KQ W Sbjct: 178 DLVFNHCWQSPEQLIMDLRGLIGRQIRLE--PDLSRVNLQEAYDEWIETLNNFKQAWLAN 235 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE--TNSYQLPESLEKFSQRFLEDR 297 +L +LI++S +++R + +++ KW+ +I +A E L L++F+Q L ++ Sbjct: 236 SDDLQSLIQASDVNKRSYTKASLPKWLAQIDQYAASEQLEPGKTLKGILQRFTQSVLIEK 295 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 T G P HPLF ID LLA + +R++++T AL E+ +AR K FDD+L+ Sbjct: 296 TTKGA-APEHPLFVQIDDLLASSVPVREILLTSALKEVETRLARTKAEYQLQTFDDLLTG 354 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ 417 +AL + +L +A+R +FPVA+IDEFQDTDP QY IF ++ +AL++IGDPKQ Sbjct: 355 FSAALSVDQTGLLVSAVREQFPVALIDEFQDTDPLQYGIFSHLYSDPFNSALVMIGDPKQ 414 Query: 418 AIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE-IPFI 476 AIYAFRGADIFTY++AR V YTLDTNWRS GMV++VNKLF D AF++ E IPF Sbjct: 415 AIYAFRGADIFTYIQARRSVSETYTLDTNWRSTSGMVDAVNKLFQFADSAFIYDEDIPFT 474 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLME-GESCGVGDYQSTMAQVCAAQIRDWLQAGQR 535 PVK+AGK+ A + + A+ +W +E E Y S AQ A++I L Sbjct: 475 PVKAAGKS-AKKLTIQQHEPAALNIWHLESEEPLNKVQYLSAFAQSTASEIDRLLS---- 529 Query: 536 GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 G+A + + R V SDI+VLVR R EA ++R AL + E P VYLSN+DSVF + EA E Sbjct: 530 GDASIGD----RSVEGSDIAVLVRDRFEAEEIRRALAVYEHPCVYLSNQDSVFNSQEALE 585 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKR 655 + +L AV P+ E L++ALAT ++ N ++ LN DE+AW+ VV EF Y++IW K Sbjct: 586 LSLILAAVEQPQNERALKAALATEILLQNVQQLDQLNYDENAWEGVVAEFTEYQEIWLKL 645 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI 715 GV+P L ++ RN++ LL GGERRLT++LH++ELLQ+A +++E L+RW ++ I Sbjct: 646 GVLPCLSRMLHQRNLSARLLEQMGGERRLTNLLHLAELLQQASSEVEGTSGLIRWFNEQI 705 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFE 775 P + + +RLES+++LV IVTIHKSKGLEYP+V+LPFI NFR Q+ AFYHD Sbjct: 706 ANPSGASDDKILRLESERNLVTIVTIHKSKGLEYPIVFLPFIANFREQKTAFYHDDEG-T 764 Query: 776 AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 AVLDL++ +++ A+ ERLAE+LRLLYVALTRSV+ C LG+A + K + + Sbjct: 765 AVLDLSSGEGALEEADKERLAEELRLLYVALTRSVYRCYLGLADIRLGNSKK---SRLSD 821 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQ-----VNDVSTAELNA 890 SA+G LL Q+ L + L A Q D+ + V++ L+ Sbjct: 822 SAIGYLLL----QNGDNLDEALSQLSQVSDAIQICSPPDHGAQKDMFAFVDEPEMEALSV 877 Query: 891 KTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD--AAGVASVVEEPTLTPHQFPRG 948 + +WRV+SYS L + ++P LD++ V + +T FP+G Sbjct: 878 REFSGKIDRSWRVSSYSALSRHSAE-HLPVLPGLDLEVVEESGEEQVGDDGMTIFNFPKG 936 Query: 949 ASPGTFLHSLFEDLDF--------TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 A+ GTFLHS+FE++DF + + E+L L G+E W+PV+ + I VLQ Sbjct: 937 ANAGTFLHSVFEEIDFYTYLHNPECRIEYQAQISEQLILAGYEEAWQPVIDQLIVDVLQT 996 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 L + G SL Q+ +++ VEMEF L ++ L +QL+ LIR++D LSA P+ F ++G Sbjct: 997 ELGDGGFSLGQVRDKDRLVEMEFMLK-ADHLQVAQLEGLIRRYDALSAQTRPVAFEPLKG 1055 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 MLKGFIDL+FR + RYY+LDYKSN LG + YTQ+A+ AM HRYDLQY LY+LA+HR Sbjct: 1056 MLKGFIDLLFRVDDRYYVLDYKSNHLGNRADCYTQEALERAMAEHRYDLQYLLYSLAVHR 1115 Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGV-----DKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 L R+ +YDY+ HFGGV YLFLRG+ D + G+++ RP LI MD++FAG Sbjct: 1116 LLMQRVPNYDYDKHFGGVFYLFLRGMTACGKDSGNTTLGVFSNRPERELIEKMDQLFAGE 1175 Query: 1176 TLE 1178 + Sbjct: 1176 LIN 1178 >UniRef50_A1SUW1 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Psychromonas RepID=A1SUW1_PSYIN Length = 1226 Score = 1092 bits (2825), Expect = 0.0, Method: Composition-based stats. Identities = 480/1209 (39%), Positives = 713/1209 (58%), Gaps = 44/1209 (3%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V + L+ L PL G+RLIEASAGTGKT+TIA+L++RLLLG G AA PLTV+++LVVT Sbjct: 15 VVQPLNALTFPLYGQRLIEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVT 74 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FTEAATAELR RIR I ++R+ ++ +DNP + LL+E+ D A + L AE QMDE Sbjct: 75 FTEAATAELRNRIRERIQDVRLDFIQGESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDE 134 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 AA+FTIHGFCQRML NAFESG LFEQ L+ED++ L AC DFWR Y L + +++ Sbjct: 135 AAIFTIHGFCQRMLMQNAFESGSLFEQNLLEDDAQLLQLACNDFWRTFFYGLSTPLTELI 194 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 F W+ P L +++ +L P +D +++ + ++ I+T+K W + + Sbjct: 195 FSYWENPGQLQKNLRPFLSRSDLHF-LPKINDFDFKAKYERSISFIETLKINWLNDQSDY 253 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 +I S + +R +++ N W+ ++S WA + S LP+SL KFSQ+ L+++T G E Sbjct: 254 ADIITHSAVSKRSYSKKNIPNWLKEVSQWALTSSASLSLPKSLVKFSQKTLDEKTPKG-E 312 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 P HP+F I+ LLA LS+ + ++ +A ++ + K ++ LGFDD+L+RLD+AL+ Sbjct: 313 IPTHPVFSEIEALLALDLSLENTILVKATHWVQAHLQSNKNKQMLLGFDDLLTRLDAALQ 372 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---------QPETALLLIGD 414 + + + LA IRT +P+A+IDEFQDTDP QYRIF I+ L +IGD Sbjct: 373 NGNEKSLALNIRTAYPIALIDEFQDTDPVQYRIFTTIYQSLEGEDSEPLDKSLGLFMIGD 432 Query: 415 PKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-REI 473 PKQAIY+FRGADIFTYMKAR V AHY+LD N+RS P M+++ N F F++ +I Sbjct: 433 PKQAIYSFRGADIFTYMKARQNVSAHYSLDYNYRSTPEMIDASNTFFEFCPAPFIYNDDI 492 Query: 474 PFIPVKSAGKNQALRFVFKGETQPAMKM--WLMEGESCGVGDYQSTMAQVCAAQIRDWLQ 531 PF V++ K + + V + + PA ++ ++ ++ C +I+ L Sbjct: 493 PFSAVQAPDKRRK-KLVVENKDDPAQSALQFIHPVGGENSQGFKDSITHACINEIKKILL 551 Query: 532 AGQRGEALLMNGDDARP-VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 Q+ +A L + R +RA+ I+VLVR+ +EA +R+AL I SVYLS ++SV+ T Sbjct: 552 LAQQDKAYLEDKKGKRSIIRANHIAVLVRTGKEAQLIRNALFNENINSVYLSLKESVYAT 611 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 A+++L +LQA + PE E LR+A+A + + + + W+ + +F YR+ Sbjct: 612 SHAKDLLRILQACLNPENERLLRAAIACKLFCQTPYQVHQILLNTRLWEEKIGQFIEYRR 671 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 WR G++ ML L + I+ LL GER LTD+LH++ELLQ+ + E AL+RW Sbjct: 672 QWRSVGILAMLHKLFHQQAISAYLLKDTQGERLLTDVLHLAELLQKNSVDHDGEFALLRW 731 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 + I + +S S Q+ RLES+K LVQ+ T+HK+KGL+Y +V++PF ++ + YHD Sbjct: 732 FGEQIKQGNSGESEQKQRLESEKDLVQVSTLHKAKGLQYDIVFMPFTGLYQKPQACLYHD 791 Query: 771 RHSFEA-VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 A + DL + LAE E+LAEDLRLLYV LTRSV+ C +G+ + R + Sbjct: 792 PDQNNALIFDLQNTKNNAALAEKEQLAEDLRLLYVGLTRSVYRCYIGIGNYKKGR---EK 848 Query: 830 DTDVHQSALGRL-LQKGE---PQDAAGLRTCIEALCDD--DIAWQTAQTGDNQPWQVNDV 883 ++ + +SALG + LQ G+ D L ++ + D+ +I+ + D +Q Sbjct: 849 NSPLCKSALGYICLQAGKGLLAGDTEQLNKQLQKMADNSLNISIRPTPLLDETHYQARQS 908 Query: 884 STAELNAKTLQRLPGDNWRVTSYSGLQQ-------RGHGIAQDLMPRLDVDAAGVA---S 933 L + NW ++SYS L + + + +MP ++ + Sbjct: 909 DQPLQAPLVLGKQVERNWWISSYSSLSRFHTQTNTQVASVTPTVMPIDNISNEQTEVSPA 968 Query: 934 VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGF--ESQWEP 988 ++ P TP FPRGA GTFLH LFE + + E+L L + W P Sbjct: 969 ILTSPEKTPFSFPRGAKHGTFLHELFELTNLENMETETLNELLFEQLLLRHYPDPELWAP 1028 Query: 989 VLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 1047 VLT WI +L L + L LSA+ K++EM+F++P+ + L A++++ L++++DPLS Sbjct: 1029 VLTAWIEQILGHDLAAGADIKLGDLSAQQKKIEMQFFIPM-QELQANEVNNLLKKYDPLS 1087 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 A L+F V+G LKGFIDL F G+YY+LDYKSN LG+ Y Q +M A+ HRY Sbjct: 1088 ARAGELQFRTVQGFLKGFIDLTFEKNGQYYVLDYKSNHLGDCLQDYNQTSMEQALIEHRY 1147 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIAL 1167 D QYQLYTLALHR L+ R+ADYDYE H GGV Y FLRG+ E + G+Y +P+ LI Sbjct: 1148 DFQYQLYTLALHRLLKSRLADYDYETHIGGVFYTFLRGMQGEQ-EYGVYFVKPSFSLIDG 1206 Query: 1168 MDEMFAGMT 1176 +D++F+G Sbjct: 1207 LDKLFSGQK 1215 >UniRef50_Q1LST8 Exodeoxyribonuclease V, beta subunit n=2 Tax=Gammaproteobacteria RepID=Q1LST8_BAUCH Length = 1183 Score = 1091 bits (2823), Expect = 0.0, Method: Composition-based stats. Identities = 534/1187 (44%), Positives = 751/1187 (63%), Gaps = 24/1187 (2%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 ++P+ L L+ LIEASAGTGKT+T+ LYLRLLLG+GG +A+ RPL++ E+L+VTFTEA Sbjct: 1 MNPITLQLKQHCLIEASAGTGKTYTLVILYLRLLLGIGGLSAYHRPLSITEILLVTFTEA 60 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A E+R RI IH LRI+C+ +++PL LL +I + A LL AE+Q++EAA+F Sbjct: 61 AIKEIRSRIHDTIHRLRISCVCGYSNDPLLAALLLQIKNIPLAINQLLAAEQQINEAAIF 120 Query: 128 TIHGFCQRMLNLNA--FESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 TIHGFCQRMLN+N ES ++QL+ED++ L Q DFWRR+C PLP +A++V + Sbjct: 121 TIHGFCQRMLNINYNLLESSFWSQKQLLEDDTHLLQQVVTDFWRRYCSPLPDSVARIVQQ 180 Query: 186 TWKGPQALLRDINRYLQG---EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 W GP LL + YL E+ ++ ++ H +I+ ID +K+QW + + Sbjct: 181 YWTGPDQLLTSLLPYLHNMHIESIIVSDQLITTASIIDHHNKIINYIDALKKQWLLFMQQ 240 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 I+ I+ + W KIS WA + T Y +P LE+ + L + Sbjct: 241 WSIFIQYIPING--ICKKTALNWKKKISIWANKLTVDYAIPIELERLN-YLLCNTNTLPV 297 Query: 303 ETPRHPLFEAIDQL-LAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 E H F+ + + L S+++ ++ A+ EI ++ +EK + + F D+L D+ Sbjct: 298 EIRDHLFFKELAKFYLNYQFSLQEFILRLAINEIIPSLEKEKNLKNIMSFHDLLKDFDNI 357 Query: 362 LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421 L S GE+ A IR+R+PVAMIDEFQD DP QYRIF+R++ T LLLIGDPKQAIY+ Sbjct: 358 LTSNHGEIFANFIRSRYPVAMIDEFQDIDPLQYRIFKRLYDLTKNTVLLLIGDPKQAIYS 417 Query: 422 FRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA 481 FRGADIFTY+ AR V YTLDTNWRSAPGMVN+VN+LF F+F EIPF P ++ Sbjct: 418 FRGADIFTYIHARKLVKECYTLDTNWRSAPGMVNAVNQLFQSLPIPFIFSEIPFKPAVAS 477 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 N L+F+ + QPAM +WL + GV YQ +MA CAA I WL++ G A L Sbjct: 478 AFNSNLQFMLDEKAQPAMLLWLQASNNVGVAHYQKSMAHQCAATISYWLRSSNAGLAWLE 537 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 + + ++ASDI VLVR+R EAA + DA+T L I SVY+S+ SVF+T+EA+E++ LLQ Sbjct: 538 SNKGRKQLQASDIVVLVRNRDEAALINDAMTALSIKSVYVSSFSSVFQTIEAREIMCLLQ 597 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A++ PE+ N LR ALATS++G IE+ N +E + +F+ Y +IW++ G++PML Sbjct: 598 AIVEPEQHNKLRCALATSLLGGEVDVIESFNINEKINNKWRGKFNLYHKIWQQHGILPML 657 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 R ++ +IAE L++ GER +T++LH+ ELLQ+A Q ++E+ALVRWLS I +P+ Sbjct: 658 RHIIIENHIAEFWLSSYSGERCITNVLHLGELLQQASVQFDNEYALVRWLSVKITDPNDK 717 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 +QQ+ LE+ +LV I+TIHKSKGLE+PLV LPF +NFR ++ + +HDR + A LDL+ Sbjct: 718 DKNQQLWLENHHNLVHIITIHKSKGLEFPLVLLPFASNFRSKKHSMFHDRQLYPAGLDLS 777 Query: 782 AAPESVDLAE-AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 AP S++L E +RLAEDLRLLYVA+TRS++HC +G+AP+ +D+H SALG Sbjct: 778 IAPNSMNLTEDDKRLAEDLRLLYVAVTRSIYHCCIGIAPIYHGYSKITSTSDLHLSALGY 837 Query: 841 LLQKGEPQDAAGLRTCIEAL---CDDDIAWQTAQTGDNQPWQVN-DVSTAELNAKTLQRL 896 L+Q+G +A LR+ +E L + DI+ V+ V+ EL+A+ L Sbjct: 838 LIQQGNAGNAIFLRSQLEKLLVRAEGDISLCEINKSPLSHTIVSIPVANLELSARHLPIN 897 Query: 897 PGDNWRVTSYSGLQQR--------GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG 948 D W++TSY+ LQ+ Q L ++VD + E LT H FP G Sbjct: 898 LFDRWQITSYTELQKNTAVTSIRFNDKAQQQLYSNINVDLLNHQQYITE--LTQHTFPCG 955 Query: 949 ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVS 1008 G FLHS+FE +DF++ +D + +L + W VL +W+ V+ APLN + +S Sbjct: 956 KLAGKFLHSIFETIDFSKQIDSTQLSLELTKHNIDQCWLLVLQQWLHKVITAPLNNSNLS 1015 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 LS+L RN E+ F LPI+ L A +D L + +DPLS CP L+F V+GML G IDL Sbjct: 1016 LSKLDHRNYCTELPFLLPINTTLRAQDMDKLCKNYDPLSLRCPTLDFTPVKGMLTGVIDL 1075 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 VF + RYYLLDYKSN LGEDSSAYT++A+ AM HRY+LQYQLYTLALHRY+RHR+ + Sbjct: 1076 VFCWQNRYYLLDYKSNRLGEDSSAYTKEAIEQAMIQHRYELQYQLYTLALHRYMRHRLVN 1135 Query: 1129 YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 YDY+ FGG+ YLF+RG++ P + IYT RP+ LI +D+MF G Sbjct: 1136 YDYQRDFGGIFYLFIRGIELNLPIESIYTYRPDISLINKLDQMFNGK 1182 >UniRef50_C0QI07 RecB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI07_DESAH Length = 1242 Score = 1050 bits (2715), Expect = 0.0, Method: Composition-based stats. Identities = 463/1245 (37%), Positives = 663/1245 (53%), Gaps = 83/1245 (6%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + LD L PL G RLIEASAGTGKT+TIAALY+RL+LG G F RPL E+LVVT Sbjct: 1 MNRKLDALTFPLHGTRLIEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVT 60 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQM 121 FT AAT ELR RIR+ + E +P + L ++ D A L A M Sbjct: 61 FTNAATQELRERIRARLTEACAFFRGRGGGDPFLQGLKDDYSPGDLPAMANLLERAALWM 120 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DE+A+ TIH +CQRML +AF+S LF+ L + L +A DFWR + YP E Q Sbjct: 121 DESAIHTIHAWCQRMLFQHAFDSLSLFDLTLEPGDDDLLEEAVWDFWRTNFYPRDVETLQ 180 Query: 182 VVFET--WKGPQALLRDINRYLQG------EAPVIKAPPPDD-ETLASRHAQIVARIDTV 232 + + P LL+ + + G +A +++ P D + L R + I Sbjct: 181 ALGQATGLTTPADLLKKVRPLMAGINNADIDAGGLESVPLDPFQMLEQRRSAIEKARRVW 240 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 + +++A+ + ++ ++ ++ WI + +W + LEKFS Sbjct: 241 QAGFKEAIDLVQKARADKTLNNNRYRPASLDTWIADMDSWVNGQ-GDLPTDTVLEKFSAT 299 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSI--RDLVITRALAEIRETVAREKRRRGELG 350 L T G P HP F+A+D+L S+ + + EI + V K R +G Sbjct: 300 GLAQGTSKKGTPPAHPAFDALDRLNDSLGSLDVKQALFAHGAREINDRVMAAKARLSRMG 359 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 F+D+++RL AL + LA IR +FPVAMIDEFQDTDP QY +F I+ Q ++ L Sbjct: 360 FNDLITRLGQAL-ARPDTCLAQLIRAQFPVAMIDEFQDTDPVQYTLFNTIYLDQEQSGLF 418 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTD---- 465 +IGDPKQAIYAFRGADI TY++AR + YTLD N+RS+ GMV +VN++FS Sbjct: 419 MIGDPKQAIYAFRGADIHTYLRARQDAGDRLYTLDKNFRSSSGMVAAVNQIFSHGAKFPL 478 Query: 466 DAFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD---YQSTMAQV 521 AF+F+E IPF PV + +++ F+ +G+ M +W M+ G Y STMA Sbjct: 479 GAFLFKEMIPFDPVLAQDRDET--FMVEGQAAVPMTLWQMQDGPVAKGGPDGYLSTMAGA 536 Query: 522 CAAQIRDWLQAGQR---GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 A+++ L GQ+ G L P+ SDI+VLVR EA +R AL L + S Sbjct: 537 AASEMVRLLNLGQQRPQGAGFLQKDGSFVPLVPSDIAVLVRDVNEARHIRSALDLRGVRS 596 Query: 579 VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW 638 VYLS+R+SVFE+ EA ++++L+A P E +R+ALAT ++ L+ +ETLNNDE AW Sbjct: 597 VYLSDRESVFESQEAVSLVYILKACFDPTNERAVRAALATPLLDLSLKTLETLNNDESAW 656 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG 698 + V +F +++ WR +GV+PM+RAL+ ++ LL+T GER+LT++LH+ E+LQ Sbjct: 657 ETAVIQFKSFQKTWRTKGVLPMVRALVFEFDVGARLLSTLAGERKLTNLLHLGEILQAES 716 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 L+ E ++RWL I P + +RLESD+ LV+++TIHKSKGLEYPLV+LPF Sbjct: 717 AALDGEQGVIRWLGDQIARPQISVEDDILRLESDQRLVRVITIHKSKGLEYPLVFLPFAC 776 Query: 759 NFRVQEQA-----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 + R QA HD L +N ++++ A+ ERLAE+LR+LYVALTRS + C Sbjct: 777 SARKLTQANASVVTAHDPDG-TPFLVVNPDAKALEAADQERLAEELRMLYVALTRSCFAC 835 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEAL--CDDDIAWQTAQ 871 LG+ + + + T +H+SA+G L+ + A L + L D I Sbjct: 836 FLGIGVMGKTLKSGEVTT-LHESAMGYLMAGQTMVETAQLPGLLNELKGGSDAIVITPLP 894 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP-RLDVDAAG 930 + + + L A+ +NWR+TSYSG+ + ++ +DV+ Sbjct: 895 PPGKEMFVPGSELPSLLPARLFNGTIPNNWRITSYSGILANAAMPEKGVVAFPVDVEVPD 954 Query: 931 VASVVE------------------------------EPTLTPHQFPRGASPGTFLHSLFE 960 AS + P L+ H FPRG PGTFLH L E Sbjct: 955 SASQDQLQEAQLQEAQIQEEQIQEQQIQMAMVSNIHSPALSIHGFPRGPEPGTFLHDLLE 1014 Query: 961 D--------LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG--VSLS 1010 + +P+ + ++ G+E W VL +W+ + PL G +L+ Sbjct: 1015 WAAIQGFDRVAQDRPLALDHIQRACVARGWEP-WTGVLVDWLMDFVTVPLTVDGVTFTLA 1073 Query: 1011 QLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVF 1070 L + + EMEF S + ++D L+ P L ++ GM+KGFIDLVF Sbjct: 1074 DLGKQQCRPEMEFMF-ASHGVAVGKVDQLVCSHVLPGNLRPVLNPNRLNGMVKGFIDLVF 1132 Query: 1071 RHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYD 1130 + RYY+LDYKSN LG+++ AY AM AM HRYDLQY LYTLALHR L+ R+ DYD Sbjct: 1133 CFKDRYYILDYKSNHLGDEAGAYDAAAMNQAMLGHRYDLQYVLYTLALHRLLKSRVVDYD 1192 Query: 1131 YEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 Y+ GG +YLFLRGV+ QG+Y RP LI +D F G Sbjct: 1193 YDRDLGGAVYLFLRGVNST--GQGVYFDRPPKDLIETLDRFFQGG 1235 >UniRef50_D2BZV4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Dickeya dadantii Ech586 RepID=D2BZV4_DICD5 Length = 1230 Score = 1048 bits (2710), Expect = 0.0, Method: Composition-based stats. Identities = 490/1244 (39%), Positives = 685/1244 (55%), Gaps = 90/1244 (7%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S + LD LR PL G RLIEASAGTGKTFTIA LY+RL+LG GG AF RPL ++LV Sbjct: 4 SALPSALDVLRFPLCGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEHAFSRPLNPPDILV 63 Query: 62 VTFTEAATAELRGRIRSNIHELRIACL---------RETTDNPLYERLLEEIDDK--AQA 110 VTFT+AAT ELR RIR+ + + + +PL L + + Sbjct: 64 VTFTDAATRELRDRIRARLAQAAAYFQPNDKGGTAGEDDEVDPLLRELRADYPSEQWPDC 123 Query: 111 AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 A+ L LA MDEAAV TIH +C RML +AF+SG LF Q L D+S L + D+WR Sbjct: 124 ARKLQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSELLLEVVRDYWRT 183 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 +PL + ++W P+ R + L + P + ++ A+ ++ Sbjct: 184 FFFPLDARDVLELRDSWAAPEDFYRSVTPLLDYADEIGIDDLP-AQIFSTVRAEKTRQLA 242 Query: 231 TVKQQWRDAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 +K W EL L+ ++ D RK W+DK+ WA + + + Sbjct: 243 ALKAPWTQWCDELRDLLNAAVAAKKADGRKLQARYFDPWLDKLQHWASSDETTLDIGTGW 302 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQL---LAEPLSIRDLVITRALAEIRETVAREK 343 + + + L + K E P HP A++ L L++ R ++ A I + E+ Sbjct: 303 TRLTPQGLRECWKIPDEAPSHPALRAMETLAQQLSDLPEPRSQLLRHACRWIHQRFRSEQ 362 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH- 402 R ++GF D+L+RLD ALR ++GE LA IR +FPVAMIDEFQDTDP QYRIF ++ Sbjct: 363 ESRAQMGFQDLLTRLDGALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRV 422 Query: 403 --HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNK 459 + P+ L+LIGDPKQAIYAFRGADI+TY++AR + HYTL TN+RS MV++VN+ Sbjct: 423 ATNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVDAVNQ 482 Query: 460 LFSQTDD------AFMFRE------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLME-G 506 +F Q ++ AF+FR+ +PF+PV++ G++ V +G A+ W +E Sbjct: 483 VFMQAENRANGAGAFLFRQPDGDNPVPFLPVQANGRDDIW--VQEGTPAAALTCWTLETD 540 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD-ARPVRASDISVLVRSRQEAA 565 E +Y+ MA CA ++ LQ G++G+A ++ D RPV+ D++VLV + +EA Sbjct: 541 EPLSSSEYRQRMAAGCAREMVRLLQLGEQGQAGFVSSDQRWRPVKPGDMAVLVNTGREAM 600 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 VR L+ + SVYLS+R+SVF++ A E+ L A PE + LR+ALAT ++GL+ Sbjct: 601 AVRAQLSARGVRSVYLSDRESVFDSPLAGELHCWLSACADPENDRLLRAALATPLLGLSW 660 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 ++ LN+DE W+ V +F Y+Q WR++GV+PMLR L+ ++ LLA A R LT Sbjct: 661 QALDRLNHDEQEWERRVMQFVRYQQCWRQQGVLPMLRRLLWEFDVPRRLLA-ADNARALT 719 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 D+LH+SELLQ+A L+ EHAL+R+L++ + + S ++RLESD LV++VT+HKSK Sbjct: 720 DVLHLSELLQQASVHLDGEHALIRYLAEQCQADNPGSDSLKVRLESDADLVKVVTVHKSK 779 Query: 746 GLEYPLVWLPFITNFRVQE----QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRL 801 GLEYPLV+LPF FR +HD + L+L A+ E+V A+ ERL EDLR Sbjct: 780 GLEYPLVFLPFACAFRTVSHRDVPLKFHDDDG-QPRLELIASDEAVARADHERLGEDLRK 838 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC 861 YVALTR+ + LGVAPL + +SA G LL GEP +A L +C+ Sbjct: 839 FYVALTRARYALWLGVAPLKE----------LEKSAPGYLLGAGEPVEAGQLASCLSLWI 888 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLM 921 D+ ++ + A L + WR+TSYSGLQ G Q+ Sbjct: 889 GPHSQIAPLPESDDAVYRAARETPALGQEPPLPDIRRHRWRITSYSGLQLAPEGQYQERR 948 Query: 922 PRLDVDAAGVASVVEEPTLTP----------------HQFPRGASPGTFLHSLFED---- 961 DAA V S +E P + FPRGA PG+FLH L E Sbjct: 949 ESAAHDAAEVQSARQETFSEPQETAERLPPLPVGYDMYSFPRGAVPGSFLHGLLEWAGKE 1008 Query: 962 ----LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL-----NETGVSLSQL 1012 L +P + V + G+ W P+LT+W+ A L PL VSL+ L Sbjct: 1009 GFAALAADRPRVEDQVARRCNRQGWTP-WIPMLTDWLMAQLNQPLALPASPAGTVSLAGL 1067 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + QVEMEF+ +++ + +LD + A PL + GMLKGFIDLVF H Sbjct: 1068 T--QYQVEMEFWFALNQ-VDTQRLDQQVSAATLAGAPRVPLMRDALNGMLKGFIDLVFEH 1124 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +GRYY+LDYKSNWLG D++ Y MA AM HRYDLQ LY ALHR LR R+ DYDY+ Sbjct: 1125 QGRYYVLDYKSNWLGADAADYDLAHMARAMLDHRYDLQLALYLFALHRLLRSRLPDYDYD 1184 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 H GG +YLFLRG + P G+Y RP+ LI +D +F+G T Sbjct: 1185 RHVGGALYLFLRG--SQAPGGGVYAERPDRTLIDALDRLFSGDT 1226 >UniRef50_A8FUM4 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gammaproteobacteria RepID=A8FUM4_SHESH Length = 1251 Score = 1038 bits (2684), Expect = 0.0, Method: Composition-based stats. Identities = 475/1217 (39%), Positives = 671/1217 (55%), Gaps = 69/1217 (5%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 ++ LD L LP G RLIEASAGTGKTFTIA LY+RLLLG +PL+ E++LVVTF Sbjct: 29 SKPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGHE----IEKPLSCEQILVVTF 84 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQMD 122 T AAT ELR RIR I + TD+ L E L L ++ A + L LA + +D Sbjct: 85 TNAATGELRDRIRRKIQLAYRRFIGLETDDDLIESLYRLTPESERHLALKRLDLALKSLD 144 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EA++FTIHGFCQR+L AFES +LFE + D+S + A DFWR CYPLP +A++ Sbjct: 145 EASIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWREQCYPLPEYLAEI 204 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 + + + P AL + + L + P + L Q ++R+ + + RDA+ Sbjct: 205 IQKKFADPDALSKQLRPLLGASQASAQPVPQEFTKLQQTLTQSLSRLKLIWPRERDAIET 264 Query: 243 LDALIESSGID--RRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 L + SG+ ++ A +D + W + +NS + +E S L + Sbjct: 265 LLHALPLSGVRFGKKADAYPKLAIMLDAMDNWC-KFSNSLPPMKVMESLSLSEL--KLNK 321 Query: 301 GGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 GGE P + P+ + I++L A + A I A++K R L DD+L Sbjct: 322 GGEVPTPEQAPVLDHIERLCALIKDFIPSFLFCARNGISARFAQQKSERNLLTPDDLLIT 381 Query: 358 LDSALRSESGEV------LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-------- 403 L+ ALR EV LA I RFPVA+IDEFQDTDP Q+ IF RI+ Sbjct: 382 LEQALRPNQEEVSGQAISLANTIAKRFPVALIDEFQDTDPLQFAIFNRIYQQPSVDAMGS 441 Query: 404 ---------------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 +LL+IGDPKQAIYAFRGADI TY++AR + HY LDTN+R Sbjct: 442 DDSLIAIDEATAGTSSKNLSLLMIGDPKQAIYAFRGADIHTYIQAREQTSEHYNLDTNYR 501 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES 508 S+ M+ +VN LF DDAF+ + IPF V + V K T A+K+ L+ + Sbjct: 502 SSRNMILAVNALFENRDDAFISQAIPFESVLPSPFADNKVLVEKSTTTSALKIKLLSEDP 561 Query: 509 ---CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 + +A+ A++I L Q GE + P++A DI+VLVR R EAA Sbjct: 562 EKGLNKTTARKHLAEDAASEIARLLTESQDGECTISEK----PLKAKDIAVLVRDRNEAA 617 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 ++++L+ +I +V+LS RDSVF TLEA+EM +L A+ TP+ E LRSALATS++G NA Sbjct: 618 VIKESLSNRQIGAVFLS-RDSVFNTLEAREMALVLHALATPKDERALRSALATSLLGYNA 676 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 L I N DE ++E+FDG W +RGVMP L L + + E LL + GERRLT Sbjct: 677 LAIHGFNQDEMVRQTLLEQFDGLHHNWLRRGVMPALLNLANETKLIERLLQSEDGERRLT 736 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 D H++ELLQ+ T+L+ ALV W Q ++E +N Q+RLES+++LVQIVTIHKSK Sbjct: 737 DFRHLAELLQQKATELDGISALVNWYEQALIENHAN-EEAQLRLESEQNLVQIVTIHKSK 795 Query: 746 GLEYPLVWLPFIT----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRL 801 GLEYP+ ++PF++ N R YH+ + + V D+ + E + + E LAEDLRL Sbjct: 796 GLEYPVCFIPFVSLARDNRRKPAPMLYHENN--KLVWDIEQSDEGWERHKRENLAEDLRL 853 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEAL 860 LYVA+TR V+ C L +A R + +H++ +G LL + + + + + T + L Sbjct: 854 LYVAMTRPVYQCYLYIANHCRFTKKAGITSQLHETGIGYLLGIEEKACEFSLIETSAKRL 913 Query: 861 CDDDIAW-QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR-GHGIAQ 918 + I+ + A +Q + L K L+R WRV SYSGL + H Sbjct: 914 MSEAISVCEMADDVSSQVLEKMSDDQELLAPKVLKRRLYTPWRVGSYSGLVKDLPHERVL 973 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD--PNWVREK 976 +P + F RGA+ G+F+H + E +DFTQ + + Sbjct: 974 PGADDEAFPELEEIKDELDPLPSRFTFERGANAGSFMHLVLELIDFTQAENGLTEQLPVA 1033 Query: 977 LELGGFESQWEPVLTEWITAVLQAPLNETG-VSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 +E G + W VLT W +L AP+ + G + L QL+ K VEMEFYLPI+ L A + Sbjct: 1034 MERYGIDESWLDVLTHWYLDLLDAPIVQDGSLKLGQLTNNQKLVEMEFYLPIA-ALKADK 1092 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 L+ L++++ L F ++GMLKGFIDL F H+G++Y+ DYKSN LG+D + Y Sbjct: 1093 LNALLQEYG----YSAGLNFESLKGMLKGFIDLTFEHQGQFYIADYKSNHLGDDFTHYGP 1148 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGI 1155 +M A+++HRYDLQY +YTLALHRYL R+ DYDY+ H GG YLFLRG+ P G+ Sbjct: 1149 DSMRGAIRSHRYDLQYIIYTLALHRYLSLRMPDYDYDRHIGGSYYLFLRGMSVGAPMSGV 1208 Query: 1156 YTTRPNAGLIALMDEMF 1172 + +P GLI +D +F Sbjct: 1209 FYDKPAKGLIESLDALF 1225 >UniRef50_A4XTT1 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Gammaproteobacteria RepID=A4XTT1_PSEMY Length = 1209 Score = 1021 bits (2640), Expect = 0.0, Method: Composition-based stats. Identities = 486/1217 (39%), Positives = 664/1217 (54%), Gaps = 62/1217 (5%) Query: 10 PLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69 L PL G RLIEASAGTGKTFTI+ALYLRL+LG GG AAF PL ++LVVTFT+AAT Sbjct: 8 ALTFPLHGSRLIEASAGTGKTFTISALYLRLILGHGGDAAFREPLLPPQILVVTFTDAAT 67 Query: 70 AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKA--QAAQWLLLAERQMDEAAVF 127 ELR RIR+ + E + + L L + + A+ L LA + MDEAAV Sbjct: 68 RELRDRIRARLVEAATVFRGDAQGDDLLRELRSDFAQTQWDECARRLELAAQWMDEAAVS 127 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHG+CQRML +AF+SG LF Q L D S L + D+WR+HCYPL Q V W Sbjct: 128 TIHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHCYPLQGAALQWVAGVW 187 Query: 188 KGPQALLRDINRYLQGEAPVI-KAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL-DA 245 P L + L E V +A + + Q +A + W D + L DA Sbjct: 188 GTPAGLGSRLRPLLGEEGEVATQALGELLDGALQQREQALAELKAPWLTWADELQLLLDA 247 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 + + +D +K W+ K+ WA E L + + L + K GE P Sbjct: 248 AVAAKQVDGKKLQARFYNPWLAKLREWAGGEEPRLDLGTGFIRLTPEGLAEAWK--GEAP 305 Query: 306 RHPLFEAIDQLLAEPLSIRDLVITRALA---EIRETVAREKRRRGELGFDDMLSRLDSAL 362 HP +A+ L A+ ++ D +R+ EKR+R E+GFDDML RLD+AL Sbjct: 306 AHPALKAMALLKAQLDALPDPADAALRHAAAWVRQRFDWEKRQRAEMGFDDMLVRLDAAL 365 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAI 419 + +G LA IR +FPVA+IDEFQDTDP QYRIF ++ ++ + L +IGDPKQAI Sbjct: 366 QGSNGARLAEVIRRQFPVALIDEFQDTDPLQYRIFDTLYEVEANRGDCGLFMIGDPKQAI 425 Query: 420 YAFRGADIFTYMKARSEV-HAHYTLDTNWRSAPGMVNSVNKLFSQTDDA-------FMFR 471 Y+FRGADI TY++AR HY L+ N+RS+ MV++VN +F + + + Sbjct: 426 YSFRGADIHTYLRARRATLGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRDGGEGAFLLRD 485 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEGESCGVGDYQSTMAQVCAAQIRDWL 530 ++PFI V + G+ + +G+ QPA+ +W L E G Y MA A++I L Sbjct: 486 DLPFIEVGAQGRGEVWSV--EGQAQPALTVWHLASDEPVAKGVYLDAMAAGAASEIVRLL 543 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 GQ G+A + +R SDI+VLVR EA +R L + SVYLS++DSVF Sbjct: 544 DLGQCGQAGFIKDGVLSALRPSDIAVLVRDFNEAQAIRGELAARGVRSVYLSDKDSVFAA 603 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 EA+++L L+A P+++ LR+ALA++ +GL ++E LN DE W+ V +F YRQ Sbjct: 604 QEARDLLLWLRACAEPDQDRPLRAALASATLGLALSELEQLNLDERTWERRVMQFRDYRQ 663 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 W+++GV+PMLR L+ + + L+ GER LT++LH++ELLQ+A +L+ E AL+R Sbjct: 664 RWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQAAAELDGELALIRH 723 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 L + + A Q +RLESD+ LV++VTIHKSKGLEYPLV+LPF+ FR + Sbjct: 724 LGELLTGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFVCAFRPVDDKKPLQ 783 Query: 771 RHSFE-AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 H E L L A +S+ AE ERL EDLRLLYVALTR+ C LGVA L G K Sbjct: 784 IHDGERRRLVLKADDDSLARAERERLGEDLRLLYVALTRARHACWLGVADLKIGNGKK-- 841 Query: 830 DTDVHQSALGRLLQKGEPQDAAG-LRTCIEALCDD-DIAWQTAQTGDNQPWQVNDVSTAE 887 + +H+SALG LL G P A+G L + D A Q +++ + Sbjct: 842 -SRLHESALGYLLGGGLPLAASGELVNWLAPFASGLDSAVSPVPPASEQRYRMIEEGQFV 900 Query: 888 LNAKTLQRLPGDNWRVTSYSGL--------QQRGHGIAQDLMPR-----LDVDAAGVASV 934 + +T R ++W + SYS L Q H A P D D + Sbjct: 901 PHWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHEDAAPDSPAMQNVIDDEDPLLALAP 960 Query: 935 VEEPTLTPHQFPRGASPGTFLHSLFE---DLDFTQPVDP-----NWVREKLELGGFESQW 986 + H+FPRG +PGTFLH L E F + + + G +S W Sbjct: 961 LPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFATLAQDPHRLREALARRCQRRGLQS-W 1019 Query: 987 EPVLTEWITAVLQAPLNETG---VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 L +W+ A+L PL G V L+QL+ Q E+EF+ + + LD ++Q Sbjct: 1020 IDPLQDWLLALLSQPLPLAGADTVVLAQLT--QYQPELEFWFE-AREVDVRLLDQWVQQC 1076 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 + PL + GM KGFIDLVF H+GRYY+ DYKSNWLG D AYT++A+ A+ Sbjct: 1077 ELPGVARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSDDGAYTREAIEVAIV 1136 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 +HRYDLQY LY LALHR LR R+ DYDY+ H GG +Y+FLR PQQG Y RP Sbjct: 1137 SHRYDLQYVLYVLALHRQLRLRLPDYDYDRHVGGALYVFLR-----APQQGAYLARPPRE 1191 Query: 1164 LIALMDEMFAGMTLEEA 1180 LI +D +F G +E A Sbjct: 1192 LIERLDALFMGEAVEGA 1208 >UniRef50_A6W0A9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0A9_MARMS Length = 1240 Score = 1020 bits (2637), Expect = 0.0, Method: Composition-based stats. Identities = 480/1229 (39%), Positives = 705/1229 (57%), Gaps = 65/1229 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 ++ V E L+ L PL G+RLIEASAGTGKT+TIA LYLRLL+ G + +PLTV+++L Sbjct: 13 LNMVPEPLNALTFPLFGKRLIEASAGTGKTYTIANLYLRLLVPTGQAGDLDKPLTVDQIL 72 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLLAE 118 VVTFTEAATAEL+ RIR I R A L+ + + L ++ D +A A + LL AE Sbjct: 73 VVTFTEAATAELKARIRGRIRAARKALLQGESSDVFLADWLVQMSDEQRAGAIEKLLYAE 132 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 +QMDEAAVFTIHGFCQRML+ NAFES MLF+Q + DE A D WR YP+ Sbjct: 133 KQMDEAAVFTIHGFCQRMLSQNAFESRMLFQQTIETDELAPLSMAVKDVWRSVFYPMDDT 192 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 A ++ W P ALL+D+ YL P K PD + S +Q + V+ W Sbjct: 193 KAALIQPIWSNPDALLKDL--YLLNNQPDAKIAVPDYD-WESALSQAQETMMAVRAMWLA 249 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 ++ +E SGI +R F R + +K I ++ WA + ++L +SLEKF R Sbjct: 250 QSQDIIDALERSGI-KRTFWRKDPSKDIQAMTQWAN--STRFELDKSLEKFDTNEHASRL 306 Query: 299 KAGGETPRHPLFE---AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDML 355 GG+ P H F A+ + + ++ +++T+ + +E + R KR L F D+L Sbjct: 307 SKGGDLPAHEFFALVLALRESFPDAGRLKAVLLTQLWQQTQERMKRWKRSTQSLTFTDLL 366 Query: 356 SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH----HQPETALLL 411 + LD AL + LA IR +P+A+IDEFQDTD QYRIF I+ Q L++ Sbjct: 367 TSLDVALAQDEAGKLAERIRHLYPIALIDEFQDTDAVQYRIFSTIYAPAQVDQNALGLIM 426 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 IGDPKQAIYAFRGADI+TY+ A+ V + Y+L TN+RS+ M+ SVN LF+ + F Sbjct: 427 IGDPKQAIYAFRGADIYTYLAAKKRVDSVYSLATNYRSSAAMIRSVNGLFTTQAEPFRVT 486 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMK-MWLMEGESCGVGDYQSTMAQVCAAQIRDWL 530 IPF+ V+ G F +G+TQ A++ ++ E +Y+ TMA+ CAA + + L Sbjct: 487 GIPFVEVQDRGIASG--FSRQGQTQAALQFLYQRSDEPVSAKEYRQTMAESCAAHLHELL 544 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 GQ+GEAL+ D + VR D+++LV + +A ++DAL I SVYLS++ SVFET Sbjct: 545 LEGQQGEALI----DGKGVRPKDVALLVTNFSQANALKDALRQRGIASVYLSDKGSVFET 600 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 +EA+E+L +L A+++ +E+ LRSALATS++ + D++TLN+D+ ++ + F Y + Sbjct: 601 VEARELLIVLTAILSNGQESKLRSALATSLVDWSLEDLDTLNHDDVVYEKWGQAFRDYLE 660 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 +W K+G++PMLR M ++A N+L+ GGERRLTD LH++E LQ+ +L+S+ ++R+ Sbjct: 661 LWDKQGLLPMLREFMQDVSLAANILSHTGGERRLTDFLHLTEKLQQKSLELDSKEGVLRY 720 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF-ITNFRVQEQAFYH 769 L I P+ N+ Q++RLE+D LV+IVTIHKSKGLEYP+V+LPF +T +R Q+ + + Sbjct: 721 LRLAIQNPNGNSDEQKIRLETDAELVRIVTIHKSKGLEYPIVYLPFALTPYRDQDSSALY 780 Query: 770 DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 + + ++ +L + E A ++RL YVALTRS C +G + + +G Sbjct: 781 HDAQQQLWIAIDPDEAQTELHKEELYAAEIRLAYVALTRSKEACFIGSMEVGKSSNKTRG 840 Query: 830 D-TDVHQSALGRLLQKGEPQDAAGLRTCIEALCD--DDIAWQTAQTGDNQPWQVN----- 881 +DVH S +G L+ +GE +A L +E LC+ D Q D Sbjct: 841 AVSDVHLSGVGALIGEGESLEAGDLYPSLERLCERYQDGQMQLLDLPDEPQRLPRFKMAA 900 Query: 882 ----DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD------------ 925 E +A+ +W V SYS L + +P LD Sbjct: 901 FNKVQDELIEPHAREFTGRVERDWWVGSYSSLVVEDKERHDESVPGLDEMTRFVDPLLDN 960 Query: 926 --VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE------------DLDFTQPVDPN 971 V + + +EP FP+GA PGTFLH E D + Sbjct: 961 MEVPESPLELAQKEPEKNRFTFPKGAKPGTFLHDTLEGKALHDVSANPSFKDLLKTSHHK 1020 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + E GF+ W+ VL+EW+ ++ L G+SL L + EMEF++P++ + Sbjct: 1021 LMANFYERQGFDE-WQDVLSEWLPDIVNTELM-AGMSLGSLVPSACRKEMEFFIPVT-GM 1077 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 A QLD + R+ D +S P ++ ++GMLKGFIDL+F ++GRYY+LDYKSN+LG+D + Sbjct: 1078 NALQLDRISREHDGVSKVAPMIQDRPLKGMLKGFIDLLFEYQGRYYVLDYKSNYLGDDFA 1137 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 Y + + A+ HRYDLQYQLYTLALHR L+ R+ +YDY H GGV+YLFLRG+ E Sbjct: 1138 DYEPEKLVHAIAEHRYDLQYQLYTLALHRLLKQRLPNYDYNKHVGGVVYLFLRGMQPEQ- 1196 Query: 1152 QQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 Q GI+ +R + +D +F+G +L++A Sbjct: 1197 QTGIFQSRLTLEHVNALDALFSGDSLDKA 1225 >UniRef50_A4CBT2 Exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CBT2_9GAMM Length = 1183 Score = 1011 bits (2613), Expect = 0.0, Method: Composition-based stats. Identities = 452/1203 (37%), Positives = 654/1203 (54%), Gaps = 54/1203 (4%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P+ +PL+G LIEASAGTGKT+TI ALYLR LLGL + PLTVE++LVVTFT Sbjct: 2 QGLNPITMPLKGVSLIEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTFT 61 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAATAE++ R+R I R A + D+ + + +L E+ + A L A + MD+AA Sbjct: 62 EAATAEIKDRVRKRIILARDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDAA 121 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQRML +AFESG+ F I D+S L +A D+WR Y L +E V Sbjct: 122 IFTIHGFCQRMLKQHAFESGVAFNLTFIMDQSELLTEALKDYWRTFVYGLTKERTAHVLA 181 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 + P+ L + + L I+ DE Q ++ + K + + + A Sbjct: 182 YFPAPERLYKKVAALLSRSGAKIQPQINLDEVW-QWQEQYLSLLARFKIDYLKS--DFAA 238 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF----SQRFLE-DRTKA 300 I +S + + K + +A ++ + A+ + E ++ + F + FL+ + K Sbjct: 239 AILNSDLKKTK--PAAKAPNLELLLAFCQSEQTVFEFGSDKKSFEIWAADNFLDPEMYKK 296 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRD----LVITRALAEIRETVAREKRRRGELGFDDMLS 356 GG+T HPL + +L + + +A + ++ +K+ + + DD+L+ Sbjct: 297 GGKTFSHPLCQVFTELSELQQKLTFGMPIAIAQQATKWVSAALSTKKQEQRLISPDDLLT 356 Query: 357 RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPK 416 +L AL S+ G+ LA+ I FPVAMIDEFQDTDP QY IF +I++ + A +IGDPK Sbjct: 357 QLHHALFSDGGDTLASQIAADFPVAMIDEFQDTDPIQYGIFSQIFNRE-SCAFTMIGDPK 415 Query: 417 QAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-REI 473 QAIY FRGADIFTY+ A+ +V YTL NWRS+ G+VNSVN LF+ D++F+F ++I Sbjct: 416 QAIYGFRGADIFTYINAKHQVSTEQQYTLGKNWRSSTGIVNSVNALFNHHDNSFIFNQDI 475 Query: 474 PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC--GVGDYQSTMAQVCAAQIRDWLQ 531 PF+ V++ GK G+ A + ++E ++ +A + +I LQ Sbjct: 476 PFLAVEAQGKTAEQALYLDGKAVTAFEFCVLEHDAPVTSKAYAMPRLAAHFSDKIATLLQ 535 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 Q G A + + V+A+DI VLVR R EA+ +++AL+ I SVYLS RD V ++ Sbjct: 536 QAQAGRATI----GSHAVQAADICVLVRDRNEASFIKEALSKQGIASVYLS-RDGVLQSP 590 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI 651 A +L L A+ E+ R LA + LN I L +E W + F I Sbjct: 591 LALHLLNFLTALHGQYDESAYRGVLAGPLFNLNYQQIYQLAENEQTWQQYLALFSELSDI 650 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGG-ERRLTDILHISELLQEAGTQLESEHALVRW 710 W K+G M ML L+ N+A A ER LTD H++E+LQ+ +LE LVRW Sbjct: 651 WYKKGAMAMLELLLMRNNLAGLWQAMGLPVERWLTDFRHLAEILQQKQLELEGSLRLVRW 710 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 +Q+I+ D++ S Q+RLESD LV+IVT+H SKGLEYPLV++PF FR + YH Sbjct: 711 FAQNII--DTSKESAQLRLESDAKLVKIVTMHASKGLEYPLVFMPFAVGFREASEQIYHQ 768 Query: 771 RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 E V +L S LAE ERLAEDLRLLYVALTR V C +G+ + Sbjct: 769 D--GELVYNLIKDDASQQLAEKERLAEDLRLLYVALTRPVHQCFIGMYNIAVGN---SKS 823 Query: 831 TDVHQSALGRLLQKGE----PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTA 886 + ++ALG LL G+ D L A D+A D++ ++++ Sbjct: 824 MTIQRTALGHLLFAGQTLTSATDWHQLLNAFAAAHSADMAVSYFAETDSKISLSDELTVP 883 Query: 887 ELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEP--TLTPHQ 944 K NWR+TS+S L ++ + P + ++ + + EE L Sbjct: 884 NYERKLFTGKIERNWRLTSFSALSYNQ--ASEHITPGFEDESHELDWLGEEQSNELNQFS 941 Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDP---------NWVREKLELGGFESQWEPVLTEWIT 995 FPRGA G+ LH++FE++DF P V ++L+ E W+ V +WI Sbjct: 942 FPRGARAGSCLHAIFEEIDFQHPDTHPSDPSKNLGAVVEQQLQKYSIEPHWQLVAEQWIK 1001 Query: 996 AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF 1055 VL PL+ G+SL++L A+ +EMEFYLP L A+ ++ ++ S L+F Sbjct: 1002 RVLSTPLDADGLSLNKLGAQQCLIEMEFYLPFER-LDATGINQVLDSVASESVFKHNLKF 1060 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 ++GMLKGFIDL+F +G+YY+LDYKSN LGE +S Y Q M MQ+H Y LQY LY+ Sbjct: 1061 ETIQGMLKGFIDLIFEWQGKYYVLDYKSNHLGELASDYQQSNMEEVMQSHHYHLQYLLYS 1120 Query: 1116 LALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 +ALHR L+ R+ADYD E H GGV YLFLRG+ +GIY + +I +D MF Sbjct: 1121 VALHRLLKTRLADYDIEQHLGGVYYLFLRGM---GEGEGIYFKKIAKEIILQLDRMFEQA 1177 Query: 1176 TLE 1178 TLE Sbjct: 1178 TLE 1180 >UniRef50_B0TRK3 Exodeoxyribonuclease V, beta subunit n=4 Tax=Shewanella RepID=B0TRK3_SHEHH Length = 1240 Score = 1009 bits (2610), Expect = 0.0, Method: Composition-based stats. Identities = 472/1215 (38%), Positives = 661/1215 (54%), Gaps = 69/1215 (5%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + V E LD L LP G RLIEASAGTGKTFTIA LY+RLLLG G PLT E++LV Sbjct: 20 TIVTEPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGHG----IESPLTCEQILV 75 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK--AQAAQWLLLAER 119 VTFT AAT ELR RIR I + D+ L L D+ A A + L LA + Sbjct: 76 VTFTNAATGELRDRIRKKIQLAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALK 135 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 +DEAA+FTIHGFCQR+L AFES +LFE + D+S + A DFWR CYPL + Sbjct: 136 SLDEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWREKCYPLNGSL 195 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 A V+ + P AL R + L V P + L + Q ++R K W Sbjct: 196 ADVIQAKFSEPDALSRQLRPLLGASNAVAAPTPEAFDKLEANLTQSLSRF---KLIWPTE 252 Query: 240 VGELDALIESSGIDRRKFNRS-----NQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + + ++ + ++ +F + AK +D I W ++LE S L Sbjct: 253 REQTETMLHALPLNGARFGKKADGYPKLAKMLDDIDNWV-TFGQGLPPAKALEALSLNSL 311 Query: 295 EDRTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 + GGE P + P+ +++L ++ + A I + A++K R L Sbjct: 312 --KLNKGGEIPSAEQAPMLAHMERLTQLTSNLIPSFLYCARDGIAKRFAKQKLERNLLTP 369 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH--------- 402 DD+L L AL + + LA++I RFPVA+IDEFQDTDP Q+ IF I+ Sbjct: 370 DDLLLTLAGALSASTDNSLASSISQRFPVALIDEFQDTDPLQFEIFNTIYQSTASDSSPA 429 Query: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 Q + +LL+IGDPKQAIYAFRGADI TY++AR + HY LDTN+RS MV++VN +FS Sbjct: 430 QQDKLSLLMIGDPKQAIYAFRGADIHTYIQAREQTAKHYNLDTNYRSNRQMVDAVNGIFS 489 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES---CGVGDYQSTMA 519 D F+ + IPF VK++ + E + A+++ ++ ES + +A Sbjct: 490 HRADPFISQSIPFEAVKASSFADKKSLKEQVEDKSALRLRVLSEESEKGLNKTTARQLLA 549 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 A +I L Q+ + + P++A DI+VLVR R EA ++ AL+L +I +V Sbjct: 550 DDVANEIALLLTDAQQNLCAIGDK----PLKAKDIAVLVRDRHEANVIKSALSLRQIGAV 605 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 +LS RDSVF TLEA+E+ +L A+ P+ E LRSALATS++G +A I N DE + Sbjct: 606 FLS-RDSVFNTLEARELTLVLYAMADPKDERALRSALATSLLGYSAEAIHHFNQDEDSRQ 664 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 ++E+F Q+W KRG+MP L L S I E LL GERRLTD H+ ELLQ+ T Sbjct: 665 TLLEQFAQLHQVWLKRGIMPALLTLASQTQIIERLLNAEEGERRLTDFRHLGELLQQKAT 724 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT- 758 +L+ AL+ W Q ++E + + Q+RLES+++LVQIVTIHKSKGLEYP+ ++PF++ Sbjct: 725 ELDGSSALINWFEQALIE-NQPSEEAQLRLESEQNLVQIVTIHKSKGLEYPICFVPFVSL 783 Query: 759 ---NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL 815 N + YHD + + + D+ + E + + E LAEDLRLLYVALTR V C L Sbjct: 784 SRDNRKKPSPMLYHDNN--KLIWDIEQSEEGWERQKRETLAEDLRLLYVALTRPVLKCYL 841 Query: 816 GVAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAW----QTA 870 +A R + +H++A+G LL + + D L T + L + A Sbjct: 842 YIANHSRFTKKSGMSSQLHETAIGYLLGIEDKACDYERLLTQAKRLQASTPDAISLKELA 901 Query: 871 QTGDNQPWQVNDVSTAE-------LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR 923 G + + A K L+R WRV SYSGL + H + ++P Sbjct: 902 PAGSDVALSAEPIILARDESIETHFAPKVLKRPHLTPWRVGSYSGLVK--HLAHEKVLPG 959 Query: 924 LDVDAAGVASVVEEP---TLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLE 978 D + V+ + T + F RGA+ G+F+H + E +DFTQ + + Sbjct: 960 ADDEVFPEVDVIIDEVDNTPSRFTFERGANAGSFMHLVLELIDFTQAETDLDEQLPIAMS 1019 Query: 979 LGGFESQWEPVLTEWITAVLQAPLN-ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 G + W VL W +L APL ++ + L+QL + K VEMEFYLPIS L A +L+ Sbjct: 1020 KYGIDETWVEVLKLWYIDLLHAPLATDSSLKLAQLMPQQKLVEMEFYLPIS-ALNADKLN 1078 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 L+ +F L F ++GMLKGFIDL F H +Y++ DYKSN LG+D S Y Sbjct: 1079 ALLTEFG----YSAGLSFDDLQGMLKGFIDLTFEHNNQYFIADYKSNHLGDDLSQYHYSN 1134 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYT 1157 M A+++HRYDLQY +YTLALHRYL R+A+YDY+ H GG YLFLRG+ PQ G+Y Sbjct: 1135 MQQAIRSHRYDLQYIIYTLALHRYLSLRMANYDYDLHMGGSFYLFLRGMSVNSPQSGVYY 1194 Query: 1158 TRPNAGLIALMDEMF 1172 +P LI +D +F Sbjct: 1195 DKPPKLLIEKLDALF 1209 >UniRef50_Q080D8 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gammaproteobacteria RepID=Q080D8_SHEFN Length = 1276 Score = 1008 bits (2607), Expect = 0.0, Method: Composition-based stats. Identities = 469/1284 (36%), Positives = 683/1284 (53%), Gaps = 131/1284 (10%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ L LP G LIEASAGTGKT+TI+ LYLRLLLG GG A PL+ E++LVVTFT Sbjct: 8 PLNALTLPFSGSSLIEASAGTGKTYTISGLYLRLLLGHGGKA----PLSCEQILVVTFTN 63 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI--DDKAQAAQWLLLAERQMDEA 124 AAT ELR RIR I+ L ++ E+L ++ D++ A + L LA + +DEA Sbjct: 64 AATEELRDRIRKRINLAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEA 123 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIH FCQR+L+ AFES +LFE + D+S + A DFWR CYPLP +AQ + Sbjct: 124 AIFTIHAFCQRVLSDMAFESSLLFESEFTLDDSEFLHHAVRDFWREVCYPLPPFLAQAIS 183 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 + + P L + + L V+ P +TL + +Q ++R + Q D+ E Sbjct: 184 DVFAEPDVLAQKLRPLLGASQAVLSKQPLAFKTLQQQLSQSISRFTLLWQSLHDSTLE-- 241 Query: 245 ALIESSGIDRRKFNR-----SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 L++S ++ ++F + ++ D IS W + ++LE+ + L + Sbjct: 242 -LLQSLPLNGQRFGKGADGYPKLSQLFDSISNWV-KFGQGLPPIKALEQLALSEL--KLN 297 Query: 300 AGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLS 356 GG P PL + I++LL + + RA IR+ A +K++R + DD L Sbjct: 298 KGGVIPSADEAPLLDHIERLLELINQLIPSFLVRAREGIRQRFAGQKQQRNLMTPDD-LL 356 Query: 357 RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-------------- 402 + S++ LA AI RFPVA+IDEFQDTDP Q+ IF +++ Sbjct: 357 LSLAMALSQNPITLAHAIAKRFPVALIDEFQDTDPLQFTIFNQVYQQPLASQLDLTADAR 416 Query: 403 -----------------------HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA 439 ++ +LL+IGDPKQAIYAFRGADI+TY+ AR + A Sbjct: 417 VNSPDDDSKSNDDNGNDNIGNDANKGRLSLLMIGDPKQAIYAFRGADIYTYIAARQQTQA 476 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM 499 HY LDTN+RS+ +VN VN+LFSQ D F+ + IP+ VK+ A+ Sbjct: 477 HYNLDTNYRSSTQLVNGVNQLFSQHQDPFISQAIPYDIVKTPSSAANKHLSEATTNPTAL 536 Query: 500 KMWLMEGESC---GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG--DDARPVRASDI 554 ++ L+ + + +A A++I+ L Q+G + N +A+P+ A DI Sbjct: 537 RIRLLAEDDVNGLNKTTARQRLAADAASEIKRLLTEAQQGLCKVNNSIEQEAKPLIAKDI 596 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 ++LVR R EAA ++ L+ +I +V+LS RDSVF T+EA+EM LL A+ TP+ E +R+ Sbjct: 597 AILVRDRNEAAVMKAELSARKIGAVFLS-RDSVFNTIEAREMAILLYALATPKDERAIRA 655 Query: 615 ALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 ALAT ++G NA I N DE V+++F + Q+W++RGVMP L S + Sbjct: 656 ALATELVGFNAQRIHQFNQDEEQRQQVLDQFTHWHQLWQQRGVMPALLNFASETKLIHRY 715 Query: 675 LAT------------------------------------AGGERRLTDILHISELLQEAG 698 L+ A GERRLTD H++ELLQ+ Sbjct: 716 LSQSVTADINNDSTYSSNNDNNSDNSFNDADDDNAADLKASGERRLTDFRHLAELLQQKA 775 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF-- 756 T+L+ AL+ W Q ++ ++ QQ+RLES+++LVQIVTIHKSKGLEYP+ ++PF Sbjct: 776 TELDGSSALINWYEQQLI-GNNGGDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVS 834 Query: 757 ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 + + A + + + D++A E + + E LAEDLRLLYVALTR V+ C L Sbjct: 835 LARGNKKRPAPMMYHKNEQLIWDIDATDEGWEQLKQETLAEDLRLLYVALTRPVYVCYLY 894 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALC--DDDIAWQTAQTG 873 +A R+ + +H++ +G LL + D A ++ + A+ Sbjct: 895 IAN-QSRQLKAGISSQLHETGIGYLLGITDKKTDFALIQAKVNAIATLPAMSVECLGNDI 953 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVA- 932 D+ + L AK + R+ WRV SYSGL + H + + P D + Sbjct: 954 DDSVLADIHDNNDPLVAKKVTRVQSLAWRVGSYSGLVK--HLPHERVAPGADDEDFTDEL 1011 Query: 933 -------SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFE 983 + EP L F RGA+ G+F+H + E DFTQ + + ++ GF+ Sbjct: 1012 IQLQLQDELTSEPELDRFTFERGANAGSFMHLVLELFDFTQANTELTPALTKAMKQYGFD 1071 Query: 984 SQ-WEPVLTEWITAVLQAPL------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 W+ L W +L APL +T ++LSQL + K VEMEFYLPIS L ASQL Sbjct: 1072 EALWQQPLMTWYQQILVAPLFIEPSSEDTSLTLSQLGMKQKMVEMEFYLPIS-TLQASQL 1130 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 + +++Q L+F ++GMLKGFIDL F H+G++Y+ DYKSN LG++ S YT Sbjct: 1131 NHILQQHG----YVAGLDFDTLKGMLKGFIDLTFEHKGQFYIADYKSNHLGDNYSDYTHS 1186 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIY 1156 AMA A+ AHRY+LQY LYTLALHRYL R+ +Y+Y+ H GG YLFLRG+ EHP G++ Sbjct: 1187 AMAKAIDAHRYNLQYILYTLALHRYLSLRLPNYNYQQHIGGCYYLFLRGMHPEHPGAGVF 1246 Query: 1157 TTRPNAGLIALMDEMFAGMTLEEA 1180 +P LI +D +F G T A Sbjct: 1247 YDKPPQALIEQLDRLFTGNTDNRA 1270 >UniRef50_Q0AGC8 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Proteobacteria RepID=Q0AGC8_NITEC Length = 1228 Score = 1000 bits (2585), Expect = 0.0, Method: Composition-based stats. Identities = 468/1244 (37%), Positives = 671/1244 (53%), Gaps = 88/1244 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRP-LTVEEL 59 MS LD LPL G LIEASAGTGKTFTIA LY+RL+LG G AF LT E+ Sbjct: 1 MSQNITPLDLFTLPLTGSHLIEASAGTGKTFTIAMLYVRLILGHQGEFAFSGGALTPPEI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTD-------NPLYERLLEEID-DKAQAA 111 LVVTFTEAAT ELR RIR+ + E + + +PL + L E + A A Sbjct: 61 LVVTFTEAATKELRDRIRARLTEAARLFRADPINAQSLNDTDPLQQLLFEYSPAEWAACA 120 Query: 112 QWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 + L LA MDEAA+ TIHG+C RML +AF+S LF Q+L D++ LR + D+WR Sbjct: 121 RKLELAAEWMDEAAISTIHGWCNRMLREHAFDSQSLFTQELETDQTELRAEVVRDYWRIF 180 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ----IVA 227 YPL E + WK P L + + L + D T+ S + ++ Sbjct: 181 YYPLTLEEIVWINGYWKSPTELGKAVTPLLDYVDQLPDLSATDPSTIISASQENKQNLLT 240 Query: 228 RIDTVKQQWRDAVGELDALIESSG-IDRRKFNRSNQAKWIDKISAWAEEET-NSYQLPES 285 ++ W D + L E++G ID RK W++K+ WA + ++ + + Sbjct: 241 KLKQPWALWADELQALLDAAEAAGQIDGRKLRADWYTNWLNKLRDWANDPAMDNVDIGKG 300 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL---VITRALAEIRETVARE 342 E+ + + K G +P HP F+ I L ++ D +++ A I + Sbjct: 301 WERLTSEGIAKAWKKG-TSPHHPAFDTIPVLKEALNNLPDPRIELLSHAACWIAKKFDTI 359 Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 ++ R ++GF+D+L+ L++AL GE LA IR +FPVA+IDEFQDTDP QYRIF I+ Sbjct: 360 RKHRSQIGFNDLLTGLETALTGLYGERLAQVIRQQFPVALIDEFQDTDPVQYRIFEYIYE 419 Query: 403 ---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVN 458 ++ + AL+LIGDPKQAIYAFRGADI TY+KAR V YTL+TN+RS MV++VN Sbjct: 420 ISSNRNDCALILIGDPKQAIYAFRGADIHTYLKARRAVEGRLYTLNTNFRSTQAMVDAVN 479 Query: 459 KLFSQTDD------AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWL-MEG 506 F+ ++ AF+FR +PF+ V++ G+ F +GET PAM + + + Sbjct: 480 HCFASVENQADSRGAFLFRTGDGNPVPFLEVQANGRRDT--FQIEGETLPAMLLAVSAQQ 537 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD-DARPVRASDISVLVRSRQEAA 565 DY M+ +CA +I DWL G+ +A D R VR DI++LV + EAA Sbjct: 538 MELSKTDYIEQMSALCATRIVDWLNDGKSAKAGFAGQDMSFRAVRPGDIAILVNNGNEAA 597 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 +R AL + SVYLS++D+V+ T +A E+ L A P+ + LR+AL+T+ +GL Sbjct: 598 NIRQALLQRGVRSVYLSDKDTVYATRQATEVHRWLAACAEPDNDRLLRAALSTTSLGLTL 657 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA------G 679 +++ LN DE AW+ V +F GYR++W+K+GV+PMLR ++ + LLA Sbjct: 658 AELDALNTDEAAWEAQVIQFKGYRELWQKQGVLPMLRRILVDFKCGDRLLALKENLNGQS 717 Query: 680 GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 GER LTD+LH++E+LQ+A LE EHAL+R+L++ I P+ A S+++RLESD LV++V Sbjct: 718 GERILTDLLHLAEILQQASFTLEGEHALIRFLAEQIAAPEGEADSKKLRLESDSDLVKVV 777 Query: 740 TIHKSKGLEYPLVWLPFITNFRV---QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLA 796 TIHKSKGLEYPLV+LPFI R + + L A PE + A+ ERL Sbjct: 778 TIHKSKGLEYPLVFLPFICITRPIKNSDIPLKWHDDQGTLKISLAAHPEIMARADLERLR 837 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 ED+R LYVALTR+ + +G+AP+ + SA+G L + + A Sbjct: 838 EDVRKLYVALTRACYLTWMGLAPIKNKS-----------SAVGHLF-RLKATPAEQYLDA 885 Query: 857 IEALCDDDIAWQTAQTGDN--QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL----- 909 +++ + + DN + + S A R+ +NWR++SYS L Sbjct: 886 LQSFVQERPDFCVTDKPDNNLEQYVAETRSAPPGEACRPLRMVRENWRISSYSALRVDGN 945 Query: 910 -------QQRGHGIAQDLMPRLDVDAAGVASVVEEPTL-TPHQFPRGASPGTFLHSLFED 961 Q+ L +L+ + V E+P T H F +GA G FLH L E Sbjct: 946 VPSTRIAQEDTPQAENLLEEQLERSFISLQPVSEQPASVTIHHFFKGAEAGIFLHELMEW 1005 Query: 962 LDFTQ----PVDPNWVREKLELGGFESQWE---PVLTEWITAVLQA--PLNETGVSLSQL 1012 + T D +R+ +E WE L +W+ +L P G+ L+ L Sbjct: 1006 VANTGFTIVSSDETDLRDTIERRCKMRHWETWVAPLVDWVKRMLSTSLPFGSIGICLNTL 1065 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + EMEF+ S + + LD + + S P L ++ GMLKGFIDLVF++ Sbjct: 1066 TVVK--AEMEFWAEASN-VDLTLLDAAVIEQTLASRPRPHLTQSELNGMLKGFIDLVFQY 1122 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +GRYY+ DYKSNWLG YT AM ++A+RYDLQY +Y ALHR L+ R+ DY+YE Sbjct: 1123 DGRYYVADYKSNWLGATDQDYTVAAMDEVIRANRYDLQYVIYLFALHRLLKSRLPDYNYE 1182 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 H GG LF+RG+D P G++ RP L+ +DE+FAG T Sbjct: 1183 QHVGGAACLFVRGIDA--PTAGVHFERPPGTLMDTLDELFAGKT 1224 >UniRef50_A1WWI3 DNA helicase/exodeoxyribonuclease V, beta subunit n=17 Tax=Gammaproteobacteria RepID=A1WWI3_HALHL Length = 1240 Score = 999 bits (2582), Expect = 0.0, Method: Composition-based stats. Identities = 476/1233 (38%), Positives = 663/1233 (53%), Gaps = 76/1233 (6%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 A+ L+PLR PL G RLIEASAGTGKT+TIAALYLRL+L G AA+ + LT ++LVVTF Sbjct: 7 AKPLEPLRFPLYGSRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTF 66 Query: 65 TEAATAELRGRIRSNIHELRIACL---RETTDNPLYERLLEEID---DKAQAAQWLLLAE 118 TEAAT ELR RIRS + E A + +P + LL E ++AQAA+ L LA Sbjct: 67 TEAATRELRERIRSRLAEAAAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELAA 126 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 MDEAAV TIH +C RML +AF+SG LF Q L D L ++ D+WR YPL E Sbjct: 127 EWMDEAAVATIHAWCYRMLREHAFDSGSLFTQDLETDPGELLAESVRDYWRTFVYPLDPE 186 Query: 179 IAQVVFET--WKGPQALLRDINRYL---QGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 Q+ + P AL R + R + + A P + LA R ++ +K Sbjct: 187 AFQLFRQAVGAADPDALQRALARLIGADEELADDADDPLLEPSGLAERLGAWHQALEQLK 246 Query: 234 QQWRDAVGELDALIESSGIDRRKFNR---SNQAKWIDKISAWAEEETNSYQL-------P 283 WRD ++A E + RR N N + +++++AWA++ L P Sbjct: 247 APWRDEREAVEA--EFLDLHRRVLNGTKYKNPQQLLERMAAWADDPAQPVPLTDKGKPDP 304 Query: 284 ESLEKFSQRFLED--RTKAGGETPR--HPLFEAIDQLLAEPLSIRDLVITRALAEIRETV 339 LE+ S L D R K G P H F+A+D+ + E + ++ A I Sbjct: 305 GLLERMSATGLADPSRHKKGQSLPASLHRAFKALDRHV-ELDAPGVAILRAAARWITRRF 363 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR- 398 E+RRR +LGF D+L+RL ALR G LA IR++FPVA+IDEFQDTDP QY +F Sbjct: 364 QAEQRRRAQLGFQDLLTRLRDALRGPGGARLAQTIRSQFPVALIDEFQDTDPVQYELFET 423 Query: 399 --RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVN 455 RI + P L LIGDPKQAIY FRGADI +Y++AR+ HYTL N+RS+ +V Sbjct: 424 VYRIADNDPGLGLFLIGDPKQAIYGFRGADIHSYLRARAATEGRHYTLPRNFRSSEALVG 483 Query: 456 SVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 +VN+LF++ + AF FR +PF PV++ G+ + F G PA+ +W + Sbjct: 484 AVNQLFARAEGSWPAGAFAFRGGSGGGLPFHPVEAQGRGEF--FEEAGAEHPALNLWCHD 541 Query: 506 -GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL---LMNGDDARPVRASDISVLVRSR 561 G S Y T A+ CAA+I L G A+ G PVR D++VLVR+ Sbjct: 542 PGVSVAKNAYLPTYAEACAARIVALLNGGAARPAVTGFRHPGGHLEPVRPRDMAVLVRNH 601 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 EA+ +++AL E+ SVYLS+RDSV T EA +++ L+A P E +R+ALAT + Sbjct: 602 TEASAIQEALAAREVRSVYLSDRDSVLATAEADDLVRWLRACAEPTDEGLVRAALATPTL 661 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 GL +++ L DE AW+ +E+F YR++WR RGV+ ML L+ + + LLA +GGE Sbjct: 662 GLALSELDRLVTDELAWERRIEQFGEYRRLWRSRGVLAMLHRLLHDFGVPQRLLAISGGE 721 Query: 682 RRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 R LT++LH++ELLQ+ + + E AL+R L + + + Q +RLESD+ LV++VTI Sbjct: 722 RSLTNLLHLAELLQQWAREHDGEQALIRHLVELRQQARNGVEDQILRLESDEDLVKVVTI 781 Query: 742 HKSKGLEYPLVWLPFITNFR---VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED 798 HKSKGL+YPLV+LPF+ FR ++ E V+ A++ERLAED Sbjct: 782 HKSKGLQYPLVFLPFVCTFRPVTARDAPRRVPDQHGRLRWRFELDQEDVEAADSERLAED 841 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 LRL YVALTR+ C +G+AP+ + + + +SA G LL + + GL +E Sbjct: 842 LRLFYVALTRAQHACWVGMAPITQGN---TKRSLLERSAAGYLLAGPDGVEPGGLGAVLE 898 Query: 859 --ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 A D I + + + + +R D W + SYS L + Sbjct: 899 QAAAADPAITVSEPLLDEASRFVGDPAAPPLGEPCQPRRRAADAWWIASYSALVRHDTAG 958 Query: 917 AQDLMPRLDVD----AAGVASVVEEP---TLTPHQFPRGASPGTFLHSLFEDLD-----F 964 P + ++V+E + H FPRG GTFLH+L E Sbjct: 959 RARSAPASAAEDVLREESGHALVQEAGGDAGSWHGFPRGPDAGTFLHNLLEWAATQLGLA 1018 Query: 965 TQPVDPNWVREKLELGGFESQWE---PVLTEWITAVLQAPLNETGV--SLSQLSARNKQV 1019 T P W+ ++E W+ + W+ A+L A L+ G +L+ Q Sbjct: 1019 TAGAQPEWLDAEVERRCRFRGWDGQVATVQGWLRALLGAELSLPGAQTTLALGRLPTYQA 1078 Query: 1020 EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLL 1079 E+EF + ++PL A +LD L+ Q PP+ ++ GMLKGFIDLV HEGRYY+ Sbjct: 1079 ELEFLIE-TQPLRADRLDDLVCQHLLPGRARPPVAPARLNGMLKGFIDLVCCHEGRYYVA 1137 Query: 1080 DYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 DYKSNWLG Y + + A + RYDLQ +YTLALHR LR R+ DYDY+ H GG Sbjct: 1138 DYKSNWLGGGDGHYAPEYLEAEVLERRYDLQLVIYTLALHRLLRARMPDYDYDRHVGGGF 1197 Query: 1140 YLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 YLFLRGV + P QG++ RP LI +D Sbjct: 1198 YLFLRGV--QAPGQGVFHARPPRALIEELDGWL 1228 >UniRef50_Q0HJB9 Exodeoxyribonuclease V, beta subunit n=11 Tax=Shewanella RepID=Q0HJB9_SHESM Length = 1274 Score = 998 bits (2580), Expect = 0.0, Method: Composition-based stats. Identities = 475/1270 (37%), Positives = 682/1270 (53%), Gaps = 118/1270 (9%) Query: 1 MSDVAE--TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEE 58 M+ V+ LDPL LP G RLIEASAGTGKT+TI+ LYLRLLLG G S + L E+ Sbjct: 1 MTKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSES----LNCEQ 56 Query: 59 LLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLL 116 +LVVTFT AAT ELR RIR I L ++P + L ++ + +A A + L Sbjct: 57 ILVVTFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDL 116 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A + +DEAA+FTIHGFCQR+L AFES +LFE D+S + A DFWR CYPLP Sbjct: 117 ALKSLDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLP 176 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 +AQ++ + P L++ + L P LA +Q V R + Sbjct: 177 EYLAQIIASEFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLSQSVQRFKLAWPRG 236 Query: 237 RDAVGELDALIESSG--IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 RDA+ EL + +G + N A+ D++ + L + LE S L Sbjct: 237 RDALLELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFLAFGHGLPPL-KVLEALSLSEL 295 Query: 295 EDRTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 + GG P PL + ++QL A +I+ + A I E A++K+++ L Sbjct: 296 --KLNKGGVIPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTP 353 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW---------- 401 DD+L+ L +A+++ + L A+ +RFPVA+IDEFQDTDP Q+ IF I+ Sbjct: 354 DDLLTTLAAAMQANP-DTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGVDTQD 412 Query: 402 --------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGM 453 + +LL+IGDPKQAIYAFRGADI+TY++AR + AHY LDTN+RS+ + Sbjct: 413 PAAAEPKPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTEAHYFLDTNYRSSRNL 472 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG--V 511 V VN LF+Q D F+ + IPF PVK+ A + V A+++ L+ G Sbjct: 473 VVGVNHLFAQHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNSAALRLKLLSEGDTGLNK 532 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 + T+A+ AA+I L G+ G P+ A DI++LVR R EAA ++ AL Sbjct: 533 ASARQTLAEDTAAEITRLLTQAANGQCSTPKG----PLIAKDIAILVRDRNEAAVMKTAL 588 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 + +I +V+LS RDSVFET+EA+EM +L+A+ +P+ E LRSALAT+++G A I Sbjct: 589 SKRQIGAVFLS-RDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAF 647 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA------------- 678 N DE ++E F QIW+KRG+MP L +L +A + LL + Sbjct: 648 NQDEEQRQRLLEHFFELHQIWQKRGIMPALLSLANATQMVARLLHSPILPSTDQAEQDAA 707 Query: 679 ------GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 GERRLTD H++ELLQ+ T+++ AL+ W Q +++ ++ QQ+RLES+ Sbjct: 708 AQLEASNGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLID-NTGTDEQQLRLESE 766 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFIT----NFRVQEQAFYHD---RHSFEAVLDLNAAPE 785 ++LVQIVTIHKSKGLEYP+ ++PF++ N R YH + E V DL E Sbjct: 767 QNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDE 826 Query: 786 SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ-K 844 + A+ E LAEDLRLLYVALTR V+ C L +A R + +H++A+G LL Sbjct: 827 GWEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGLK-SQLHETAIGYLLGIT 885 Query: 845 GEPQDAAGLRTCIEAL------CDDDIAWQT-AQTGDNQPWQVNDVSTAELNAKTLQRLP 897 D + L+ +AL I+ + A D + L+A+ + R Sbjct: 886 DTDCDFSRLQNAAKALVAGLESSPPAISIEVVADNIDANKLHTGGSDSQTLSARKVSRQY 945 Query: 898 GDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE--------------------- 936 WRV SYSGL + +V+A Sbjct: 946 RTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAADPLWAAPLWQEALLQEVE 1005 Query: 937 ---EPTLTPHQFPRGASPGTFLHSLFEDLDFTQ-PVD-PNWVREKLELGGFESQWEPVLT 991 +P L F RGA+ G+F+H + E +DFTQ P+D P + + + G W+P+L Sbjct: 1006 PQAQPLLNRFSFERGANAGSFMHLVLELIDFTQAPIDLPRELPKAMLQYGIAPVWQPILE 1065 Query: 992 EWITAVLQAPLN---------ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 +W VLQAPL + L+ L+ ++ VEMEFYLP++ L ++L+ L+ Q Sbjct: 1066 DWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNR-LKDTELNQLLGQ 1124 Query: 1043 FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 F + L+F +++GMLKGFIDL F ++G++Y+ DYKSN LG++ AY A+ A+ Sbjct: 1125 FGYDT----ELQFEELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAI 1180 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 HRYDLQY LY+L+LHRYL R+ +YDY+ H GG YLFLRG+ ++P GIY +P Sbjct: 1181 SDHRYDLQYILYSLSLHRYLAMRLPNYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPK 1240 Query: 1163 GLIALMDEMF 1172 LI +D +F Sbjct: 1241 ALILALDGLF 1250 >UniRef50_Q8K9A9 Exodeoxyribonuclease V beta chain n=5 Tax=Buchnera aphidicola RepID=EX5B_BUCAP Length = 1179 Score = 996 bits (2575), Expect = 0.0, Method: Composition-based stats. Identities = 408/1167 (34%), Positives = 683/1167 (58%), Gaps = 17/1167 (1%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ ++PL+G LIEASAGTGKT TIA LYLRLLLGL + R L+V+E+LVVTFT A Sbjct: 24 LNIFQIPLKGIHLIEASAGTGKTSTIAFLYLRLLLGLEKNKENIRKLSVKEILVVTFTNA 83 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A EL RI+ +I EL ++C+++ + +P+++ L +I + +A L A+ ++ AA++ Sbjct: 84 AKEELYIRIKKSIKELHLSCIKKKSKDPIFQSFLTKIKNFDEAIHILEDAKININNAAIY 143 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQ +L N S +++IE+ES L QA DFWR Y LP++I ++++E + Sbjct: 144 TIHGFCQDVLENNTLIS----NREIIENESFLYLQATQDFWRYFFYNLPKKIIKIIYEEY 199 Query: 188 KGPQALLRDINRYLQGEAPV-IKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 + P+ LLR+I L+ + + K ETL + H +I+ +I+ KQ+W + + + Sbjct: 200 RSPEDLLREIKPILKVNSSINFKKKFDKKETLITFHEKIINKINIFKQKWLNYNLIILKI 259 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I ++++ ++ N KW KI+ WAE ET +Y++P L+ FS+ +E K + Sbjct: 260 INQLKVNKKIYSNFNILKWKKKITEWAESETKNYKMPICLKYFSETSIEKNIK-NYNFKK 318 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 H FE ID++L + S++++++ A+ I + V REK ++ LGF+D+L L ++ E Sbjct: 319 HIFFEEIDKILKKNFSLKNIILFYAIKNIPKFVKREKEKKLLLGFNDLLKILLKNIKKE- 377 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 E L I ++PVA+IDEFQDT+ QQY+IF ++ ++ TAL L+GDPKQ+IY+FRGAD Sbjct: 378 -ESLREIIIKQYPVALIDEFQDTNIQQYQIFNTLYKNKK-TALFLVGDPKQSIYSFRGAD 435 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 IF+Y+ A+ ++ +Y LDTNWRS+ + ++N LFS+ + F F+ IPF P+ S+ KN Sbjct: 436 IFSYLHAKFKIKNYYYLDTNWRSSKNICKAINYLFSKNKNPFYFKNIPFEPILSSSKNLN 495 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 ++F K + Q A+ + + E + +Y+ +A+ CA +I WL ++GEA++ +G Sbjct: 496 MKFKIKEKNQTAISFFFQKKEEVNIEEYRDWIAKQCANEISYWLTCSKKGEAIISDGSQE 555 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R + DI +LVR+R EA ++++L + I S Y S +SVF+T +A E+L +L++++ P Sbjct: 556 RILTEKDIVILVRNRTEAQIIKESLKKVNILSKYSSPYESVFKTFDALELLSILKSILDP 615 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 N L+ ++ T ++ A N+ ++++ Y W+ G+ ++ ++ Sbjct: 616 TDINLLKKSILTHILNKIAFQKIKENSKTKISHFLIQKLYEYNDKWKTIGIFYTIKTMIL 675 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 N ++R + LHI+ELLQE E++L+RW + ILE ++ + ++ Sbjct: 676 EYQKYANNFEMYKNQQRNINFLHIAELLQEKSQNCYKENSLMRWFEKKILEKNNISENEY 735 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPES 786 ++ ++ +++I+TIHKSKGLEYP+VW+PFI +F V + FYH++ + + D N + E+ Sbjct: 736 IKNFAESKIIRIITIHKSKGLEYPIVWIPFIVDFNVSKSYFYHEKKTLKIFFDNNKSSET 795 Query: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 + ++ ERLAEDLR LYVALTRS++HCS+G++ LV++R K +D+H+S+LG ++Q G+ Sbjct: 796 LKKSDEERLAEDLRFLYVALTRSIYHCSIGISYLVKKRKKNKKSSDIHKSSLGYIIQNGK 855 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRLPGDNWRVTS 905 + L ++ L Q + + + L+ + L + ++TS Sbjct: 856 CMNYKELLYELKILNKKLYIEVKYQAMNCKSLTIKKDDLYILSQPQFLLKEIKLYSQITS 915 Query: 906 YSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT 965 ++ ++Q ++ ++ T H FP G G F+H + + + F Sbjct: 916 FTKIKQENKHFNNIQYNNIE----SYFFKEKDKKKTIHNFPHGNKAGIFIHYILKTIKFN 971 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 + +W L+ F +W L WI +L +N ++LS L E+EF+L Sbjct: 972 NTFNIDWFYTILKKYEFSEKWAKTLMFWINNILNFKINNLNITLSSLKKTQYIKELEFFL 1031 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 PI L L+ +I+ D +S+ + F V G+LKGFIDLVF +YY+LDYK N+ Sbjct: 1032 PIKNTLYCEDLNQIIQSIDLISSISQKIFFNPVIGILKGFIDLVFIFNKKYYILDYKCNY 1091 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG 1145 LG + + Y+ + + + +RYD+QYQLYTLALH+YL+ ++ Y Y+ HFGGV YLFLRG Sbjct: 1092 LGNNDNCYSSKNIKKEIIKNRYDIQYQLYTLALHQYLKKKVKQYHYKTHFGGVFYLFLRG 1151 Query: 1146 VDKEHPQQGIYTTRPNAGLIALMDEMF 1172 ++ + I+ P+ LI + ++ Sbjct: 1152 INVKDS---IFYILPDYLLIKKLTKLI 1175 >UniRef50_C0N789 Exodeoxyribonuclease V, beta subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N789_9GAMM Length = 1164 Score = 995 bits (2573), Expect = 0.0, Method: Composition-based stats. Identities = 425/1201 (35%), Positives = 643/1201 (53%), Gaps = 69/1201 (5%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D + L+G LIEASAGTGKTFT+A LY RL+ + L V+ +LVVT+T A Sbjct: 4 FDAANVELKGVNLIEASAGTGKTFTLAELYCRLIT--------EQQLEVKNILVVTYTRA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 AT ELRGR+R + E R + L+ +DD + + L LA + DEAA+F Sbjct: 56 ATEELRGRLRKRLVEERQKLSQ-----------LDAVDD--KVIKRLKLAIQSFDEAAIF 102 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR L AFESG F+ +++ DE ++ DFWRRH A+ + Sbjct: 103 TIHGFCQRALQDFAFESGHAFDVEMVTDEEEIKQAVVDDFWRRHVSAADANFARFLLAQK 162 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 + P+ LL+ + L G+ + P P+ + + +Q A ++KQ W + ++ A++ Sbjct: 163 QTPETLLKAVGN-LPGKPYLTYLPLPEVD-IEKAQSQAEADFVSLKQCWLNYQADIIAVV 220 Query: 248 -ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 ++S + K+ A W+ + ++ET Q+ E L++F++ LE K G P Sbjct: 221 TDNSLLFANKYRSDWVANWLLMLENLLQQETLPQQVFEQLDRFTRERLEPALKKGKTLPD 280 Query: 307 HPLFEAIDQLLAEPLSI---RDLVITRALAEI----RETVAREKRRRGELGFDDMLSRLD 359 HP + ++ L + RD+ + + ++ R+ + + K++ FDD+L L Sbjct: 281 HPFWSHAERFLQSHQQLNQCRDIALQQLRMQLANYLRQELPKRKQKLKLQAFDDLLLNLQ 340 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL SE G+VL A IR +F A+IDEFQDTDP QY FR ++ + + +GDPKQAI Sbjct: 341 QALHSEQGDVLVAQIRQQFQAALIDEFQDTDPIQYDCFRTVFADS-GSPVFFVGDPKQAI 399 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 Y+FRGADIFTY+ A+ + LDTNWRS P +V +VN LF Q + F++ +IPF PVK Sbjct: 400 YSFRGADIFTYLDAKQASQREFNLDTNWRSHPLLVGAVNTLFEQVEKPFIYDDIPFYPVK 459 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEG--ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 +A + + K P +W+ + ++ GD +T A A+QI D +Q +GE Sbjct: 460 AARPDTPALTLSKQALPPLEFVWVADDGDKAINKGDMLTTAANSTASQIADLMQQSSQGE 519 Query: 538 ALLMNGD-DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 L + + D+R + DI+VLVRS +A ++ AL I SV S RD+VF++ +A + Sbjct: 520 VTLTDKEGDSRALNGGDIAVLVRSHSQATAIQQALRQRGINSVQQS-RDNVFKSEQAVML 578 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRG 656 +L AV P + + +ALAT + ALDI L D+ W + F W++ G Sbjct: 579 EQVLLAVAKPGNNSLIATALATPIFAKTALDIYQLQQDDSLWLEQTDLFQSLHDSWQQDG 638 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHI 715 + M R LM +I +L + GER+LT+++H++EL+Q A + + A++ WL+ Sbjct: 639 FIVMFRRLMEQLDIQRRILQQSDGERQLTNLMHLAELVQAYASRRNSTIEAILTWLAGQR 698 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDR 771 + Q+RLESD+ LV+++TIH SKGLEYP+V+ PF+ + +Q F+H Sbjct: 699 QASSAAQDMAQIRLESDEQLVKVITIHTSKGLEYPIVFCPFLWHQGKPKQKPELMFFHRD 758 Query: 772 HSFEAVLDLN--AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 + +A + E+ +AEAE AEDLRLLYVALTR+ C + K Sbjct: 759 ETNQACVAFGEPGFSEAEPIAEAESRAEDLRLLYVALTRARERCVIIWG------AAKNC 812 Query: 830 DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA-QTGDNQPWQVNDVSTAEL 888 + L R L P + A I QT + +N P V + L Sbjct: 813 EDTAMFGLLHRDLDTLNPAQMHSDLAELSAEHPKFIRLQTVNEEVENAP--VKPATEVAL 870 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ---F 945 +A+ + W+++S+SGL + H + + D DA V S + P T H F Sbjct: 871 SAREFKGRILPPWQISSFSGLTRGHH------VEQPDYDADSVLSEWQTPVETRHDRFGF 924 Query: 946 PRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITAVLQAPLN 1003 P+GA+ GT LHSLFE DF D +++ L G ++ W V+ W+ +V+ +PL+ Sbjct: 925 PKGANAGTCLHSLFEHWDFQTTGDEWQQLIQKTLSQYGIDTDWTDVVEHWLPSVVSSPLS 984 Query: 1004 -ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF----DPLSAGCPPLEFMQV 1058 E+ ++L+ +S + EM FY P+S+ L A +L T + F L L F V Sbjct: 985 TESALTLNCISQDKRLDEMAFYFPVSQ-LKAQKLKTTLTGFVTEMPVLKTVLNQLNFNDV 1043 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 G +KGFIDL+F EGR+Y+ DYKSNWLG+ + Y + A+ AM H Y LQY +Y+LAL Sbjct: 1044 TGFMKGFIDLIFEFEGRFYIADYKSNWLGDKAEDYDKVALDEAMVTHGYPLQYLIYSLAL 1103 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 HRYL+ R+ DYD E HFGGV YLF+RG+ E Q G+Y +P+A L+ +D + + Sbjct: 1104 HRYLKIRLPDYDPEQHFGGVYYLFIRGMQAEWGQAGVYFDKPSAALLDALDACMQQESGD 1163 Query: 1179 E 1179 + Sbjct: 1164 D 1164 >UniRef50_A3YGC7 Exodeoxyribonuclease V, 135 kDa subunit n=3 Tax=Gammaproteobacteria RepID=A3YGC7_9GAMM Length = 1255 Score = 991 bits (2563), Expect = 0.0, Method: Composition-based stats. Identities = 476/1247 (38%), Positives = 690/1247 (55%), Gaps = 87/1247 (6%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + LD L PL G+RLIEASAGTGKT+TIA LYLRLLL + + F R LTV+E+LVV Sbjct: 8 EAVHALDALDFPLFGKRLIEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVV 67 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAA--QWLLLAERQ 120 TFTEAATAEL+ RIR+ I E R A L T +P +LL + + A + LL AE+Q Sbjct: 68 TFTEAATAELKARIRNRIREARKALLLGQTKDPFLSQLLASMTEAEIALGVERLLYAEKQ 127 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTIHGFCQRML+ NAFES MLF+Q++ DE A D WR + YP+ +IA Sbjct: 128 MDEAAIFTIHGFCQRMLSQNAFESRMLFQQEIETDEQAPLAMAIKDVWRSNIYPMTSDIA 187 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPP-----DDETLASRHAQIVARIDTVKQQ 235 +V W P+AL ++++ +I+ + L++ ++ I VK Sbjct: 188 ALVKPIWPTPEALQKELSLLQNQPDAIIQDAISGEIKTEAFDLSALMSKAQESIKKVKSV 247 Query: 236 WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 W + + + +SGI + F QA D I WA+ +T S LP L+KF+ R Sbjct: 248 WLEQAANILDALTNSGI-KGTFWGKRQAGIPDIILDWAQSDTIS--LPPELKKFNAREHS 304 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRALAEIRETVAREKRRRGELGFD 352 + K G P H FE + L+ S I+ ++ + + + K++ +L F Sbjct: 305 HQLKKNGAQPNHSFFELVANLIDSYPSVEKIKAPLMASLWQQTQVRLLNWKQQTQKLTFT 364 Query: 353 DMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 D+L+ LD AL ++ LA IR +P+AMIDEFQDTDP QYRIF +I+ + Sbjct: 365 DLLTNLDQALAIQAQDETADNALAKRIRQLYPLAMIDEFQDTDPVQYRIFSQIYQPASQA 424 Query: 408 A----LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 L++IGDPKQAIYAFRGADI+TY+ A+ EV A Y+L TN+RS+ M+ SVN LFS Sbjct: 425 NNRLGLIMIGDPKQAIYAFRGADIYTYLAAKKEVDAIYSLATNYRSSAAMIQSVNALFST 484 Query: 464 TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG-----ESCGVGDYQSTM 518 + F+ IPF+ V+ + +F KG+ Q AM+ + E YQ M Sbjct: 485 QGNPFLVEGIPFVKVED--RQTQGQFYRKGKLQAAMQFMVAEDGFSDDAVLSSAQYQIQM 542 Query: 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 AQ+ A I L Q GEAL+ + PVR+ DI+VLV ++A ++ AL+ + S Sbjct: 543 AQLSAEHICQTLIQAQEGEALISSN----PVRSGDIAVLVSGYRQAQLMKAALSARGVAS 598 Query: 579 VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW 638 VYLS+R SVF + EA+E+L +L A+++ +E+ +RSALAT ++G +++TLN D+ + Sbjct: 599 VYLSDRGSVFASNEARELLLILNAILSQGKESAIRSALATHLLGWQVDELDTLNQDDVLY 658 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG 698 + VE F Y IW K GV+PM+RAL+ A ++A LLA GERRLTD+LH+ E LQ+ Sbjct: 659 EDWVERFKTYFDIWHKDGVLPMIRALIQALSLAPKLLAGMQGERRLTDLLHLGEKLQQKA 718 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI- 757 + ES+ LVR+L+ I P+ ++ Q++RLESD LV+I+TIHKSKGLEYPLV+LPF Sbjct: 719 KEFESKEGLVRYLALAIQTPNGDSDEQKIRLESDDELVRIITIHKSKGLEYPLVYLPFAF 778 Query: 758 TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 T FR+ + + + + + ++ E E A ++RL YVALTR+ C +G Sbjct: 779 TPFRINGKYALYHDDTHQLNYAPVPDEDQLNQHEKELYAGEVRLAYVALTRAREACFIGC 838 Query: 818 APLVR-RRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC---DDDIAWQTAQTG 873 A + + K+ + ++H S +G LL +G+ L + ++ D++ T Sbjct: 839 AQVGKAATKTKEAELNLHLSGVGSLLCEGKAVALGELESKLKGFLQAYDNEQMALTLLAS 898 Query: 874 DNQPWQVNDVSTA------ELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQD-----LMP 922 + +N S A E+ A+ +W V SYS L +A + P Sbjct: 899 EQSLLTLNAFSVADEDDENEVKAQHFSGHIERDWWVGSYSSLVVEQAELASEQEKEHSEP 958 Query: 923 RLDVDAAGVASVVEEP--------------TLTPHQFPRGASPGTFLHSLFE-------- 960 LD + ++E+ + FP+GA PGTFLH L E Sbjct: 959 GLDESVTVSSEILEQASALDEAVLTDLDNEEPSCFTFPKGAKPGTFLHDLLEGNALLGEL 1018 Query: 961 -DLDFTQPVDPNWVREKLE--LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNK 1017 + F + + + E + +W+ VL W+ +L+ PL G++L L++ Sbjct: 1019 DKVSFADLLKTQYQAKMTEYFINQGYEEWQTVLFAWLEDILKTPLYP-GLNLLGLTSDKC 1077 Query: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 EMEF+LP++ A QLD + RQ+D +S P ++ ++GMLKGFIDL+F HEG+Y+ Sbjct: 1078 FKEMEFFLPVA-GFNARQLDQIARQYDAVSLKAPAIQERPLKGMLKGFIDLLFEHEGKYF 1136 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 +LDYKSN +G Y MA A+ HRYDLQYQLYTLALHR L+ R+ +YDY+ H GG Sbjct: 1137 VLDYKSNHIGMSYDDYQAHHMAEAIAEHRYDLQYQLYTLALHRLLKQRLPNYDYDEHVGG 1196 Query: 1138 VIYLFLRGVDKEHPQ-----------QGIYTTRPNAGLIALMDEMFA 1173 V YLFLRG+ G++ TR + + +D+MF Sbjct: 1197 VCYLFLRGMRPSKVGDESSNQKLMNETGVFKTRLSKEHVQALDDMFN 1243 >UniRef50_P45157 Exodeoxyribonuclease V beta chain n=17 Tax=Haemophilus influenzae RepID=EX5B_HAEIN Length = 1211 Score = 989 bits (2557), Expect = 0.0, Method: Composition-based stats. Identities = 420/1223 (34%), Positives = 645/1223 (52%), Gaps = 74/1223 (6%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+P+ LPL LIEASAGTGKT+TI +LYLRLLL G F RPL VEE+LVVTFTE Sbjct: 6 PLNPITLPLNQISLIEASAGTGKTYTIGSLYLRLLLK-AGENNFSRPLNVEEILVVTFTE 64 Query: 67 AATAELRGRIRSNIHEL--RIACLRETTD------NPLYERLLEEIDDKAQAAQWLLLAE 118 AT EL+ +IR I + ++ +T D + L + + + +A L LAE Sbjct: 65 MATEELKKKIRERITDAINKLTAFAKTQDKSAFKNDEFLTALCDNL-NIFEAIHRLKLAE 123 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 + MD AA++TIHGFC+RML AF SG+ F +LI+D+S L + +FWR H YPL E Sbjct: 124 QNMDLAAIYTIHGFCRRMLMQYAFHSGIHFNLELIKDQSDLLVRFANEFWREHFYPLDFE 183 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVI-----KAPPPDDETLASRHAQIVARIDTVK 233 A + P +L + L + V P L ++ +K Sbjct: 184 SANFIATELVSPANVLSLLKADLGKDLQVEIENKQALSVPIQIFLPQYLGGYQKALNELK 243 Query: 234 QQWRDAVGELDALIES-----------SGIDRRKFNRSNQAKWIDKISAWAEEETN---- 278 W ++ E+ A+I + ++R+K+ WI+KI+ W+ + Sbjct: 244 AFWLESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQIN 303 Query: 279 ----SYQLPESLEKFSQRFLED-RTKAGGETPRHPLFEAIDQLLAE---PLSIRDLVITR 330 Y L S+EK + + + K P+F +++ + P + L + Sbjct: 304 TTLKDYFLQSSIEKNCEESTDKNKDKKPATPFYSPIFADLEKRVNALMTPDLLSKLTLYH 363 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 +++ + K E FDD+L L AL+ G+ LA IR ++P AMIDEFQDTD Sbjct: 364 YRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQDAQGDELAEMIRFQYPFAMIDEFQDTD 423 Query: 391 PQQYRIFRRIWHHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 QQY IF +I+ PE ++IGDPKQAIY FRGADIFTY+KA E + + L N+R Sbjct: 424 SQQYAIFSKIYRDNPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFELTKNYR 483 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES 508 S +V+ VN LF F+++ I F V S ++ LRF G+ +PA + +L E + Sbjct: 484 SEKHLVDGVNALFDFPQSPFIYQNIKFTAVDS--RDDHLRFYLNGKVEPAYRFYLTESDK 541 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 + MA++CA I+ WL++ +A+ N D + ++A++I+VLVR + EAA V+ Sbjct: 542 VNKTE----MAKICAISIQHWLKSAAENQAVFQNEDTYKTLQAANIAVLVRDKNEAALVK 597 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 + L L I SVYLS+++SVF++ A+E+ W+L+A + E + +A+AT++ GLNA DI Sbjct: 598 NELQKLGIASVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNAIATALFGLNAADI 656 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 + +E W + F Y+Q W+++G++ ML ++ + I+E LL+ A GER LTD L Sbjct: 657 HQIQQNEADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL 716 Query: 689 HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 H++E+LQ+A T ESE AL+ W + I Q+RLES++ LV+IVTIHKSKGLE Sbjct: 717 HLAEILQQAATLHESEAALLSWFEKQIQ--GEARQEAQIRLESERQLVKIVTIHKSKGLE 774 Query: 749 YPLVWLPFITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYV 804 Y LVWLPF+ Y+ + E + D+ +++ E AE+LRLLYV Sbjct: 775 YDLVWLPFLAAPSKDPSKKYINIYYSKERDETLWDIEN--RNLNALCEETFAEELRLLYV 832 Query: 805 ALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD 864 ALTR+ + + + ++ + + Q +G+ + + +D L + D+ Sbjct: 833 ALTRAKYQMAFALPAQFDKKWNALHY-VLSQGEIGKEINLSDSKDTETLLQTFKEKMQDN 891 Query: 865 IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ------------- 911 + T + P + + A +WR+TS++ ++Q Sbjct: 892 VEICTKPNLEALPTLSINTKNDDFKASEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAG 951 Query: 912 RGHGIAQDLMPRLDVDAAGVA-SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP 970 + H + D +A ++ +++ E PRG GT LH FE+ F+ + Sbjct: 952 KKHAVFDDAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANT 1011 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISE 1029 + + + + + L W+ + PL NE G++L+ L+ ++ EM FYL I E Sbjct: 1012 EEIDKLRQSLQLDETFTESLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIRE 1071 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 + ++ L + L+F Q++GM++G IDLVFRH G+YYL+DYKSN+LG Sbjct: 1072 HFDVEAFNHTLKAHHHLPSES--LQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGST 1129 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 + Y Q+A+ M YD QY +YTLALHRYL+ + YDY FGGV YLFLRG++ E Sbjct: 1130 LADYNQEALKKEMLHSHYDWQYLIYTLALHRYLQSVVPHYDYARDFGGVFYLFLRGMNGE 1189 Query: 1150 HPQQGIYTTRPNAGLIALMDEMF 1172 PQ G++ RP+ LI +D +F Sbjct: 1190 -PQSGVFYDRPSVELITELDGVF 1211 >UniRef50_B4X4Z1 Exodeoxyribonuclease V, beta subunit n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4Z1_9GAMM Length = 1198 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 469/1206 (38%), Positives = 665/1206 (55%), Gaps = 46/1206 (3%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ L P+ PL G RLIEASAGTGKTFT+AALYLRL+LG G F RPL E+LV Sbjct: 1 MNIERPL-PITFPLHGTRLIEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILV 59 Query: 62 VTFTEAATAELRGRIRSNIHELRIACL--RETTDNPLYERLLEEI---DDKAQAAQWLLL 116 VTFTEAAT ELR RIR + + D+P+ LL + DD+A+ AQ L Sbjct: 60 VTFTEAATEELRERIRDRLADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEA 119 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A + MDEAA++TIHGFC RML +AF+SG LF +L ED S + A D+WR P Sbjct: 120 AAQWMDEAAIYTIHGFCNRMLKQHAFDSGSLFSLELQEDASDEQQMAARDYWRTIISKFP 179 Query: 177 REIAQVVF-ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 A + + P ALL L + + P ++ + +QQ Sbjct: 180 VSAANALQSDNLGNPDALLEACRPLLGLKEADPEELPQSVTHWLTQTGPQADKDQQARQQ 239 Query: 236 WRDAVGELD----ALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 D + E A ++ ++ + ++ + + +A E + + ++L KFS Sbjct: 240 LADELPEFLEWVRAARDNKWLNGNSYRTTSLPGMLQTLQRYANGERLNGKAYDTLAKFSN 299 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLL---AEPLSIRDLVITRALAEIRETVAREKRRRGE 348 + + P + +D ++ A R ++ A A I V + +R+ Sbjct: 300 EGMRLTKAGQEQRPDFAFCQQLDAVMDGRANTQLPRTDLLAHAAAWIDRRVDQVRRQTAT 359 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 +GFDDMLSRL AL+ +GE LA IR +FPVA+IDEFQDTDP QY IF ++ Q T Sbjct: 360 MGFDDMLSRLHDALKGGNGERLAQVIRDQFPVALIDEFQDTDPTQYGIFCALYEGQEGTG 419 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 +IGDPKQAIYAFRGAD+FTY+KAR HYTLD N+RSA MV++VN LFS + + Sbjct: 420 WFMIGDPKQAIYAFRGADVFTYLKARRATEGNHYTLDKNFRSADAMVHAVNHLFSYSQNT 479 Query: 468 F-----MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE-SCGVGDYQSTMAQV 521 F M IPF V++ G+ L + + + +W+ E E G Y+ A Sbjct: 480 FGDVFMMDNAIPFEAVQANGRKDVL--LVDNNEKSGITLWVDEQEKPVSAGQYRDEQAAR 537 Query: 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYL 581 CA++I L +G D RP+ +DI++LVR R EA +RDAL ++ SVYL Sbjct: 538 CASEIAHLLNGAVKGVTGFQKTDSFRPLHPNDIAILVRDRTEAKAIRDALMERQVRSVYL 597 Query: 582 SNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVV 641 S++DSVF EA ++L +L A TPE + +RSALA +++ L +++ LN DE W+ Sbjct: 598 SDQDSVFAQPEAHDLLLILHACATPESDTRVRSALACAVLDLAYAELDALNQDEVRWEET 657 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 VE+F GYRQ W+ +GV+PMLR+L+ ++ L + GER LT++LH++ELLQ+A TQL Sbjct: 658 VEQFHGYRQQWQTQGVLPMLRSLLMDFHVPARLSQSLDGERALTNLLHLAELLQQAATQL 717 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR 761 + E +L+R+L + E ++ +RLESD V+++TIHKSKGLEYPLV+LPFI +FR Sbjct: 718 DGEQSLIRYLEDTVEEGRGSSKESILRLESDDDRVKVITIHKSKGLEYPLVYLPFICSFR 777 Query: 762 VQEQAFYHDRHSFEAVLDLNAAPESV--DLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 ++ R+ L+++ P+ + A+ ERLAED+RLLYVALTR+ C+LG+AP Sbjct: 778 PADKNKPPLRYHENDHLNVSLEPDETVENKADHERLAEDMRLLYVALTRACHTCTLGIAP 837 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQ 879 ++ RG + + +SA+GRLL G GLR + + D +A A + + +Q Sbjct: 838 YIKGRGKQ---NQLEKSAIGRLLF-GNGVANDGLRAALTPVAHDAVAIINAPDSNPECYQ 893 Query: 880 VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPT 939 + W + SYS L+Q +A + +V+++ Sbjct: 894 PKAQARPLRTPLIPVARQRQPWWIASYSALKQVQETLAPADPRGDQLAEQQDDTVIDDAE 953 Query: 940 LTP---HQFPRGASPGTFLHSLFEDL---DFTQPVD-----PNWVREKLELGGFESQWEP 988 P H FPRGA+PGT LH + E FTQ + V EKL+ G++ E Sbjct: 954 PLPDTIHAFPRGAAPGTLLHDVLEQAANQSFTQTLADPAEFETSVEEKLQARGWQDFMEV 1013 Query: 989 VLTEWITAVLQA-PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 1047 + W AV + PL ++L+ L E+EF P + + +++DTLIRQ Sbjct: 1014 IRHWWKQAVTTSLPLENDRIALNTL--HTYVPELEFLFPAHQ-VKVAEMDTLIRQHIHPQ 1070 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 P LE + GMLKGFIDLVF H+G+YY+LDYKSNWLG D SAYT AM A+ RY Sbjct: 1071 HPRPRLEADTLNGMLKGFIDLVFEHDGKYYVLDYKSNWLGVDDSAYTLDAMTDAVLEKRY 1130 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIAL 1167 ++QY LY LALHR L+ R+ DYD + H GG +Y+FLRG+ + P G RP GLI Sbjct: 1131 EVQYVLYLLALHRLLKSRLPDYDPDQHLGGAVYVFLRGL--QGPAAGTVFDRPATGLIEA 1188 Query: 1168 MDEMFA 1173 +D MF Sbjct: 1189 LDVMFE 1194 >UniRef50_C9PR37 Exodeoxyribonuclease V beta subunit n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PR37_9PAST Length = 1234 Score = 987 bits (2553), Expect = 0.0, Method: Composition-based stats. Identities = 452/1253 (36%), Positives = 655/1253 (52%), Gaps = 100/1253 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M D L+ + PL LIEASAGTGKT+TI +LYLRLLL G FP PLTVE++L Sbjct: 1 MMDSPRNLNAVSTPLNTVCLIEASAGTGKTYTIGSLYLRLLLQAGVEN-FPLPLTVEQIL 59 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLR-------ETTDNPLYERLLEEIDDKAQAAQW 113 VVTFTEAAT EL+GRIR IH+ + A + ++ P + L++ I+D A Q Sbjct: 60 VVTFTEAATNELKGRIRERIHQTKQAFIAYKEQGESALSEEPFLQELIQHIEDIDIAIQR 119 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +AE+ MD AA++TIHGFC+RML AF SG+ F +L++DE L ++WR Y Sbjct: 120 LKIAEQSMDLAAIYTIHGFCRRMLMQYAFNSGVHFNLELVKDEGELIQHCFNEYWREQFY 179 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQ--GEAPVIKAPPPD----DETLASRHAQIVA 227 PL A ++ PQA+ R++ + G P IK E LA I Sbjct: 180 PLSFAEANYIYNALSSPQAVRRELYSQISDFGLRPQIKQTELLALSLREFLAEYILPIQQ 239 Query: 228 RIDTVKQQWRDAVGELDALIE-----------SSGIDRRKFNRSNQAKWIDKISAWAEEE 276 +I +KQ W E+ LIE + R F + KW+ + WA Sbjct: 240 QILDLKQAWLKDEDEIIGLIENELAKSYKKGEKKALKRTTFKCNFVPKWLQTMKDWA-RA 298 Query: 277 TNSYQLPESLEK-FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSI---RDLVITRAL 332 N LP+ L K F+Q L + HP FE D+ +A R +++ L Sbjct: 299 NNRVNLPDVLVKYFNQEALNGYAEEDVTPITHPFFELADEAVATQKMQGIYRKVIMYHYL 358 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 +++ + + K E GF+D+L L AL SE G+ LA IR ++P AMIDEFQDTD Sbjct: 359 KGVQKLLIQHKLDHSEKGFNDLLRLLQEALYSEKGDELAQFIRLQYPFAMIDEFQDTDNI 418 Query: 393 QYRIFRRIWHH--QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA 450 QY+IF +I+ T ++IGDPKQAIY FRGADIFTY KA E +TL TNWRS Sbjct: 419 QYQIFSKIYIQLSSSPTGFIMIGDPKQAIYKFRGADIFTYFKAALETKQKFTLGTNWRSE 478 Query: 451 PGMVNSVNKLFSQTDDA----FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME- 505 +VN+VN LF ++ F++ +I F PV + + +F G+ QPA++ ++ + Sbjct: 479 ETVVNAVNGLFDFDENPLVQPFLYEQIQFQPV--SFRANKPKFYLNGKVQPAVQCYIGDL 536 Query: 506 GESCGVG----DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR----PVRASDISVL 557 G+ G D + +A+ CAA I WLQ+ +A+ D++ P+ I+VL Sbjct: 537 GKESRNGRLNEDQRYILAETCAASIYQWLQSAVENQAVFKASRDSKEEIEPLTEERIAVL 596 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 VR +EA ++ AL + I SVYLS+ +VF+ +AQE++ +L+A + P E + +A+A Sbjct: 597 VRDWKEAEVIKSALQKVGIASVYLSDNSNVFDCPQAQELVLILKACLNPFSERNILNAIA 656 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 TS+ L + +I + DE W V++F Y++IW+ + ++ ML L + IAENLL T Sbjct: 657 TSIWRLTSAEINQIKQDEQRWTNTVDDFVRYQRIWQTQSILAMLHQLFLEKKIAENLLMT 716 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 GGER +TD+LH++ELLQEA ES +L+RW + I + ++ Q+RLES++ LV+ Sbjct: 717 EGGERAVTDLLHLAELLQEASPLNESPASLLRWFEKKI-QGENRQGDLQIRLESERKLVK 775 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQEQAF---YHDRHSFEAVLDLNAAPESVDLAEAER 794 IVT HKSKGLEY LVWLPFI N + Y + + D+ E D + E Sbjct: 776 IVTFHKSKGLEYDLVWLPFIANPPKSNDSLIQTYFNEEQKAVLWDMEG--EHSDEIQREL 833 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 AE++RLLYVALTR+ + + + + + +A+ LL +G D A +R Sbjct: 834 RAEEMRLLYVALTRAKYQVIIAMPE----------NFSSNWNAIQYLLTQGR-MDVASVR 882 Query: 855 TCIEALCDD------DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 T + A D IA + + + +L+A T NW+VTS+S Sbjct: 883 TALTAFKDRMAKQNVQIAIDDLLDIEGKAPLLLAKPNEQLSAATFTGSIEQNWQVTSFSA 942 Query: 909 LQ---------------QRGHGIAQDLMPRLDVDAAGVASVVE------------EPTLT 941 + Q +Q L D D V E + Sbjct: 943 ISHFHEKSVLQHYLDAKQSAVDFSQFLSQEKDYDQNVVIDNTALVSFGTTILEGYEADYS 1002 Query: 942 PHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAP 1001 P FP A G LHS FE QPV+ + V + + E W+ L W+T +L P Sbjct: 1003 PFDFPASARVGKVLHSYFEKYPLNQPVEMDAVEKICQQLQLEDVWQITLQRWLTQILHTP 1062 Query: 1002 L-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP-PLEFMQVR 1059 L + + LS L+ ++ E+EFYL + + + L++++ S + ++ Sbjct: 1063 LFSTSTFCLSDLAMKDCLKELEFYLKLENTFDVVRFNHLLQKYHLFSEPLQLDVVREGIK 1122 Query: 1060 GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 GML+GFIDLVFRH G+YYLLDYKSN LG S Y+ + + M H Y QY Y +ALH Sbjct: 1123 GMLRGFIDLVFRHNGKYYLLDYKSNKLGNLLSDYSTENLEKTMCKHYYHWQYLFYCVALH 1182 Query: 1120 RYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 RYL+ R +Y YE HFGGV+Y FLRG++ + +G+Y T P+ LI ++E+F Sbjct: 1183 RYLKERDPNYQYESHFGGVVYAFLRGMNGQSA-RGVYFTVPDVALIQELEELF 1234 >UniRef50_Q12LP4 Exodeoxyribonuclease V, beta subunit n=3 Tax=Gammaproteobacteria RepID=Q12LP4_SHEDO Length = 1355 Score = 986 bits (2549), Expect = 0.0, Method: Composition-based stats. Identities = 461/1316 (35%), Positives = 674/1316 (51%), Gaps = 164/1316 (12%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 +S LD L LP G LIEASAGTGKT+TI+ LYLRLLLG G PL+ E++L Sbjct: 30 ISPTRSPLDALTLPFLGSSLIEASAGTGKTYTISGLYLRLLLGHGELP----PLSCEQIL 85 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLLAE 118 VVTFT AAT ELR RIR I L ++ L + + + A + L LA Sbjct: 86 VVTFTNAATQELRDRIRKRIQVAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLAL 145 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 + +DEAA+FTIHGFCQR+L AFES +LFE + D+S + + DFWR CYPLP Sbjct: 146 KSLDEAAIFTIHGFCQRILADLAFESSLLFESEFTLDDSEFLHHSVRDFWRETCYPLPPY 205 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 +A+++ + + P L + L P TL ++R+ + W+ Sbjct: 206 LAEIIAKQFGEPDTLASKLRPLLGPNEAKTLGIIPAFSTLTQDLTTSLSRLKLL---WQS 262 Query: 239 AVGELDALIESSGIDRRKFNRS-----NQAKWIDKISAWAEEETNSYQLPESLEKFSQRF 293 AL+ S ++ +F + + D++S WA + Y LP + S Sbjct: 263 EQENTLALLHSLPLNGTRFGKQSDGYPKLGQMFDELSHWASAD---YGLPSTKALSSLAL 319 Query: 294 LEDRTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELG 350 E + GG P PL DQ+ A + + RA I++ +K +R + Sbjct: 320 SELKLNKGGVVPSAAEAPLLAHFDQINALINNFIPAFLLRAKEGIKQRFMAQKHQRNLMA 379 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-- 408 DD+LS L SAL + + LA+AI RFPVA+IDEFQDTDP Q+ IF +++ + Sbjct: 380 PDDLLSNLASALDANP-DTLASAIGQRFPVALIDEFQDTDPLQFNIFSKVYGKASSPSQE 438 Query: 409 ------------LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNS 456 LL+IGDPKQAIYAFRGADI TY++AR++ AHY L TN+RS+ +V Sbjct: 439 QLQAPNTATGLSLLMIGDPKQAIYAFRGADIHTYIQARNQTPAHYNLATNFRSSENLVLG 498 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES---CGVGD 513 VN+LF+Q D F+ + IPF VK+ + + ++ A+++ L+ ++ Sbjct: 499 VNRLFAQHKDPFINQAIPFDSVKTPSSAAEKQLIGAQISKAALQIKLLAEDAEFGLNKTQ 558 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD-ARPVRASDISVLVRSRQEAAQVRDALT 572 + +A A++IR L Q+GE L + RP++A DI+VLVR R EAA ++ AL Sbjct: 559 ARQHLAADAASEIRQLLTQAQQGECQLSESNKPPRPLKAKDIAVLVRDRNEAAVIKAALN 618 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 +I +V+LS RDSVF+TLEA+E+L LL+A+ P+ E LR+ LAT +MG +AL I + N Sbjct: 619 ARQIGAVFLS-RDSVFDTLEARELLLLLRALANPKDERLLRAGLATELMGYDALQIHSFN 677 Query: 633 NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA---------------- 676 DE + ++ +F + Q+W+++GVMP L AL + + LA Sbjct: 678 QDEDSRQTLLSQFYHWHQLWQRQGVMPALLALANWSGLIPRFLAKGSTKDFLAKGSANNS 737 Query: 677 ------------------------------TAGGERRLTDILHISELLQEAGTQLESEHA 706 A GERRLTD H+ ELLQ+ T+L+ A Sbjct: 738 QNDSHNNSAAPQSTSATEFDTEQDETQPSELASGERRLTDFRHLCELLQQKATELDGSAA 797 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT----NFRV 762 L+ W Q ++ ++ QQ+RLES+++LVQIVTIHKSKGLEYP+ ++PF++ R Sbjct: 798 LINWFEQQLIAANTT-DEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARGGNRR 856 Query: 763 QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 YH + + D++ E ++ + LAEDLRLLYVALTR V+ C L +A R Sbjct: 857 PSPILYH--KEGQLIWDIHDTDEGLESYQQAHLAEDLRLLYVALTRPVFRCYLYIANQCR 914 Query: 823 RRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQ---TAQTGDNQPW 878 + + + ++ +G LL K + D + ++ ++A+ D A + ++ D Q Sbjct: 915 QLKG-GVSSQLAETGIGYLLGAKDKKVDFSFIQGAVQAITADIPAIEVSLVSENPDTQVL 973 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHG----------------------- 915 + ND + L KTL R WRV SYSGL + Sbjct: 974 KNNDDNDHHLAPKTLTRGYQTPWRVGSYSGLVKHQAHEKVSPGADDEEFTDELTLHFIEQ 1033 Query: 916 IAQDLMPRLDVDAAGVASVVEEPT-------------------LTPHQFPRGASPGTFLH 956 A +++P D A + ++EP L F RGA+ G+F+H Sbjct: 1034 EAHEILPEHLADKALTPAPLDEPEPLDGPVPLDEPVPLDEPAPLDRFSFERGANAGSFMH 1093 Query: 957 SLFEDLDFTQPVDP--NWVREKLELGGFESQ-WEPVLTEWITAVLQAPL----------- 1002 + E DF+Q + +R+ + GF+++ W LT W ++ PL Sbjct: 1094 LVLESFDFSQYQSQLSDAIRDAMVHYGFDAELWLEPLTTWYQEIVTTPLLIPEQTPRNTQ 1153 Query: 1003 -----NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 + SLS+L+ +VEMEFYLPIS L + L+ L++ L F Sbjct: 1154 FAASQQQRRFSLSELNPSKIKVEMEFYLPIS-ALGSLALNKLLQSHG----YQAQLSFDT 1208 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 +RGMLKGFIDL F ++G++++ DYKSN LG Y MA AM H+Y LQY +YTLA Sbjct: 1209 LRGMLKGFIDLTFEYQGQFFIADYKSNHLGNSLEDYQMANMAKAMDEHQYHLQYIIYTLA 1268 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 LHRYL+ R+ YDY+ H GG YLFLRG+ H G++ RP+ LI +D +F+ Sbjct: 1269 LHRYLKLRLPSYDYDTHIGGCFYLFLRGMSPTHVGTGVFFNRPSLDLIKALDSLFS 1324 >UniRef50_Q8D2T8 RecB protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2T8_WIGBR Length = 1162 Score = 983 bits (2542), Expect = 0.0, Method: Composition-based stats. Identities = 402/1171 (34%), Positives = 685/1171 (58%), Gaps = 22/1171 (1%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+P+ P++G LIEASAGTGKT++I YLRLLLGL + FP L+V+E+L+VT+TE Sbjct: 7 LNPISFPIKGTCLIEASAGTGKTYSIIIFYLRLLLGLNIKS-FPHGLSVKEILLVTYTEF 65 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A +L+ RIR I L+ AC+ + +PL+ +EI + ++ L+ AE +DEA++F Sbjct: 66 AKNQLKERIRKGIIHLKSACINKDETHPLF----KEIKNVKKSLIKLIYAEHNIDEASIF 121 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFC +ML+ N ES ++ IEDES L Q +FW ++C LP I++++F W Sbjct: 122 TIHGFCHKMLSANLIESKFFLDKNTIEDESYLYNQISKNFWEKYCSKLPILISKIIFSYW 181 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 K LL+D +++GE P I + +++ + + + I+ +K+ W+ + ++ I Sbjct: 182 KDSDFLLKDTLPFIKGEKPTILSSVNKKQSIKNFYYSKIIYINKIKRIWKKLIIKMLLKI 241 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH 307 S+ ++ K + K+I+ I AW+ +T ++ +P ++K + L++ K ++ Sbjct: 242 VSNLMNANK--KEKILKYINIIDAWSNNKTENFDVPIEIKKI-KNLLKNHYKNYKNILQN 298 Query: 308 PLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG 367 F +D+ +++L+ +++ ++RE EK+ + +L FDD++ + L Sbjct: 299 IFFNKVDESYKFYKKLKELIFQKSIIKMREYKKTEKKNQEKLDFDDLIILFKTELFK--F 356 Query: 368 EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADI 427 L+ IR +PVA+IDEFQDTD QY+IF +I++ + +L+LIGDPKQAIY FRGADI Sbjct: 357 NKLSKIIRNIYPVAIIDEFQDTDLIQYKIFFKIYYKKKMCSLILIGDPKQAIYGFRGADI 416 Query: 428 FTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 FTY+K ++++ Y+L TNWRS+ MVN+VN LFS+ + F+++ I F S KN L Sbjct: 417 FTYIKIKNKIKNIYSLQTNWRSSVRMVNAVNFLFSRIKNPFIYKNINFDKALSIKKNNNL 476 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 F + + Q A++ + + G+ +YQ MA+ A +I + + + + L N + Sbjct: 477 NFFIENKLQSAIEFVMYPKNNIGLHNYQKYMAEQYAIKIYNIINSSDYKKTYLENKYSHK 536 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 V SDI++LVR+R EA ++ A L IP++YLS+ SVF TLEA++++ +L A++ PE Sbjct: 537 NVIISDITILVRNRTEANFMKIACDKLSIPNIYLSDNSSVFHTLEAKDIIQILNAILFPE 596 Query: 608 RENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 EN +R AL T M GL ++I+ LN ++ + ++ EF YR +W K G+M M+ ++ Sbjct: 597 NENIVRCALLTKMFGLTNVEIQKLNYNKKIFKKIILEFILYRDLWDKFGIMQMMNYILDN 656 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 +N + ++I+HI E+L E +++++H L++WL I D + ++ Sbjct: 657 KNYFTMFNKFKKDIKYFSNIIHIVEILHETSKKIKNKHELLKWLYYQITFNDVQNENHKI 716 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV 787 R+ + V+I+TI KSKGL++P+V+LPF+++FR ++ +H + ++ +LDL + ++ Sbjct: 717 RVFDEDKAVKIMTIFKSKGLQFPIVFLPFLSSFRTKKHVLFHSKKKYKLILDLKSTLKNR 776 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 L++ ERL+ED+RL YVA+TR+++HCS+G+ L K + H++++G ++QK + Sbjct: 777 KLSDKERLSEDIRLFYVAITRAIYHCSIGICSLSIGNQTKSVMSHTHRTSIGYIIQKRKK 836 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT---LQRLPGDNWRVT 904 D L+ +E + + N ++ + + N K + ++ Sbjct: 837 SDWNTLKKYLENISFYSKGNISVNLKKNLCKKILKTNFSFFNIKKNIISNKKEDYFFKSI 896 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF 964 S+S +++ + + + P+G G F+H +FE L+F Sbjct: 897 SFSYIKKNNFNKLNYIYEHEKENKEKIYD------FNTSFLPKGKIFGKFIHKIFEKLNF 950 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 T+ +D N ++E L F+ L EWI +++ PLNE +SLS++ +NK E++FY Sbjct: 951 TKNIDKNIIKENLVKYEFDLSLTNDLAEWIKNIIKKPLNEDFLSLSRIKQKNKLTELKFY 1010 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPL-EFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 L I+ + + + LI+++DP+S+ C L + G+L G +DLVF + +YY LDYKS Sbjct: 1011 LSINSKIKEKEFNFLIKKYDPISSKCFCLKNINNINGILTGSVDLVFLWKKKYYFLDYKS 1070 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 NWLGE+SS Y ++ M M HRYD+QYQ+Y++A+HRYL+++I YDY HFGG+ YLF+ Sbjct: 1071 NWLGENSSFYNKKNMTLEMIKHRYDIQYQIYSVAIHRYLKYKIKKYDYNKHFGGIYYLFV 1130 Query: 1144 RGVDK--EHPQQGIYTTRPNAGLIALMDEMF 1172 RG++ + GIY +PN LI +++ F Sbjct: 1131 RGINNLCRKTKNGIYFIKPNYSLINKINKHF 1161 >UniRef50_C9R4S1 Exodeoxyribonuclease V, beta subunit n=5 Tax=Pasteurellaceae RepID=C9R4S1_AGGAD Length = 1221 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 428/1240 (34%), Positives = 656/1240 (52%), Gaps = 93/1240 (7%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P+ +PL LIEASAGTGKT+T+ +LYLRLLL G AFP L VE++LVVTFT Sbjct: 2 QPLNPISIPLNAISLIEASAGTGKTYTMGSLYLRLLLQ-AGENAFPHVLNVEQILVVTFT 60 Query: 66 EAATAELRGRIRSNIHELR--IACLRETTD------NPLYERLLEEIDDKAQAAQWLLLA 117 E AT EL+ +IR I++ + + ++T D + +L + I D A Q L LA Sbjct: 61 EMATEELKRKIRERIYDAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTLA 120 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 E+ MD AA++TIHGFC+RML AF SG+ F +L +E L WR H Y P Sbjct: 121 EQNMDLAAIYTIHGFCRRMLMQYAFNSGIHFNLELSGEEDELLLHLAQKLWRAHFYSQPY 180 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET--------LASRHAQIVARI 229 +++ + + P ++ +I ++ E + + P + L Q A+ Sbjct: 181 AVSEFIQKHLISPANVIHNIKKFAGTELKLPQNRPHFFDGTLPDFLAKLTDYSQQFAAQT 240 Query: 230 DTVKQQWRDAVGELDALIE-----------SSGIDRRKFNRSNQAKWIDKISAWAEEETN 278 VK+ W + ++ L+E ++RR F + + KW+ + AWAE + Sbjct: 241 AEVKKHWLENEADIAQLLETEVNTKYKSAKEQKLNRRSFTSTTRLKWLAMMKAWAESDKA 300 Query: 279 SYQLPESLEKFSQRFLEDRT-KAGGETPRHPLFEAIDQLL---AEPLSIRDLVITRALAE 334 + P +F Q + ++ + + H LF ID+LL + + + L Sbjct: 301 DF--PGCFSRFGQTAMNEQKGEEAKDALMHWLFVEIDELLQLAEQQELLSQALWFHYLQM 358 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 + + K E F+D+L L AL A IR +FP AMIDEFQDTD QY Sbjct: 359 LNTQLVEYKLNHSEKSFNDLLRLLKEALYHPDNTEFARLIRYQFPFAMIDEFQDTDAVQY 418 Query: 395 RIFRRIWHHQP------ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 +IF +I+ QP ++ ++IGDPKQAIY FRGADIFTY +A + + L N+R Sbjct: 419 QIFSKIYVEQPQTDAQSDSGFIMIGDPKQAIYKFRGADIFTYFQAARQAQHRFNLAKNYR 478 Query: 449 SAPGMVNSVNKLFSQTDDA-FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 S +V+ VN+LF ++ F++++I F+PV + + +F G+ +PA++ ++ E Sbjct: 479 SHQHVVDCVNRLFDFSEQPPFLYKDIQFMPVSA--RTDHPQFWLSGQPEPAVRFYVDEA- 535 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM-NGDDARPVRASDISVLVRSRQEAAQ 566 + +A+ CA I+ WLQ+ A+ + D + ++ I+VLVRSR+EA Sbjct: 536 -----SVKENIAKACAVSIQYWLQSAVENSAVFRLDDGDKKTLKPESIAVLVRSRKEAEL 590 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 V++ L L I SVYLS +VF++ A+++L +L A + P E + +A+AT++ + Sbjct: 591 VKNELRHLGIASVYLSEDSNVFDSSAAKDLLMILTACLNPFYERHILNAIATAIFAQTSA 650 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 DI+ + DE W+ VE+F Y++ W+K+GV+ ML L I E L T G+R +TD Sbjct: 651 DIQRIRMDETRWEHWVEKFIHYQRTWQKQGVLVMLHQLFQQEKITEKLYPTVDGKRLVTD 710 Query: 687 ILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 +LH++ELLQEA T ESE AL+RW + I + ++ QQ+RLES+ LV+IVTIHKSKG Sbjct: 711 LLHLAELLQEAATLNESEAALLRWFEKQI-QGENRQKEQQVRLESELRLVKIVTIHKSKG 769 Query: 747 LEYPLVWLPFI---TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 LEY LVWLPFI + FR Y+D + D + + E+ L + E AE LRLLY Sbjct: 770 LEYDLVWLPFIGYASTFRGDRITTYYDETQGAVLWDYDKSHEA--LVQQEDFAEQLRLLY 827 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VALTR+ + +GV + H + R +K D+ L + A Sbjct: 828 VALTRAKYQLVIGVPQTFETKWSSLLYVLTHGAIQTR--EKPNAYDSLPLLEKLVARAPQ 885 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAE--LNAKTLQRLPGDNWRVTSYSGLQQRGHGIA---- 917 + Q A T D P Q+ + A+ L+A NW VTS+S ++ A Sbjct: 886 G-SVQIANTADLIPLQLQAHAEAQIPLHAAKFTGNIEQNWTVTSFSAIEAIHQNKAYFKA 944 Query: 918 -------------QDLMPRLDVDAAGVASVVEEPT----------LTPHQFPRGASPGTF 954 DL D + G ++ T +P FP G + GT Sbjct: 945 QQMAESAVDFPSVFDLGKDYDFNEQGQSTESIRETAADESAYPFGYSPFDFPHGINIGTA 1004 Query: 955 LHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQL 1012 LH E DF +P++ + +++ + E W P L +WI A+L PL+ ++ + L L Sbjct: 1005 LHRFLEKTDFDRPLNEDKIQKLCQWLQLEETWLPSLQQWINAILHTPLSTQDSTLQLVNL 1064 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + ++ EM+FYL +++ + + ++Q L + PL+F ++GML+GF+DLVF H Sbjct: 1065 TRQHCVKEMQFYLKLNQTFDVTAFNQTLQQHHHLPSE--PLQFEAIKGMLRGFMDLVFYH 1122 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +YYL DYKSN+LG ++ Y ++ AM + YD QY YTLALHRYL+ R A+YDY+ Sbjct: 1123 NEKYYLADYKSNFLGVEAQNYVGTSLQQAMLTNHYDWQYLFYTLALHRYLQQRDANYDYD 1182 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 HFGGV Y FLRG++ E+ Q G++ +P+ LI ++ +F Sbjct: 1183 THFGGVFYCFLRGMNGEN-QNGVFFDKPDYALIQALENLF 1221 >UniRef50_Q7VRE9 Exonuclease V, beta chain n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VRE9_BLOFL Length = 1208 Score = 979 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 429/1211 (35%), Positives = 698/1211 (57%), Gaps = 44/1211 (3%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + LD L LPL G RLIEA AGTGKT+ + +YLRLLL LG AF +PL+ + +L+VTFT Sbjct: 2 QNLDILYLPLHGIRLIEAPAGTGKTYNLIIIYLRLLLNLGTQTAFSKPLSTKNILIVTFT 61 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 + A L+ RI+ NI + R+ C++ + NP++ +LL +I D + L +AE++++++A Sbjct: 62 KTAVHNLKNRIKENIRQFRLDCIQGYSTNPIFSKLLSQIYDINLSINLLRIAEKEINQSA 121 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQ++L N E MLF+ +IE++ + + C+DFWRR+ Y LP I Q++ Sbjct: 122 IFTIHGFCQKILVENTIELNMLFDLTIIENKLVPYQKICSDFWRRNFYKLPLNIIQLIQT 181 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDET---LASRHAQIVARIDTVKQQWRDAVGE 242 WK P+ LL+DI Y+ + I+ D++ +++ +A I+ ID++K++W + + Sbjct: 182 FWKNPEELLKDIIPYIYNDLTTIQHSKFIDQSHKNISTYYANIIDCIDSIKKEWNTKIQQ 241 Query: 243 LDAL----IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 D + I + R+K+N+ N +WI+ I+ W+ + T+++ +P L++F L Sbjct: 242 HDLIKIIYIHNKPNHRKKYNKKNLDRWIEIINQWSIQPTSNHTIPNELKQFRSSVL-IIN 300 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358 K + LF+ I+QL S + L++ + + + + R ++ FDD++ L Sbjct: 301 KNNQNFQKLFLFDLIEQLYRRIESFQLLILHMVMDDFQHNLYNMHYTRSQITFDDLVKLL 360 Query: 359 DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--HHQPETALLLIGDPK 416 L I ++PV +IDEFQDTD QY+IF ++ H + L+LIGDPK Sbjct: 361 LYNGFKNKNNKLIKNILEQYPVTIIDEFQDTDQNQYKIFHTLYNTHTDQKKCLILIGDPK 420 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI 476 QAIY FRGA+IFTYM+ R +H Y L+ NWRS+PGMVN++N+LF Q + F+F++I FI Sbjct: 421 QAIYGFRGANIFTYMQIRQSLHYKYYLNINWRSSPGMVNAINQLF-QVPNPFVFKDISFI 479 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 P + KN +F+ + Q + WL E + +Y++ MAQ C+ +++ L Sbjct: 480 PSIPSYKNNKHQFLIHNQLQSPLCFWLYSHECITMNNYKTIMAQECSIVLQNLLYNIHNK 539 Query: 537 EALLMNGD-DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 A L N + ++ SDI++LVR+ EA+ +R L IP+ +LS+R ++FET+E+ E Sbjct: 540 TAWLENNICKKKILQTSDIAILVRNHSEASLIRSELLKRNIPTTFLSSRRNIFETIESYE 599 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKR 655 +L L++A++ P+ + T+ +AL T NA D+E ++N+ W+ + +EF Y IW+ Sbjct: 600 LLLLIRAILFPKLD-TICTALTTIFFKFNATDVENIHNNTFRWEQIFKEFSEYYLIWKNN 658 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI 715 ++ M++ ++ I E LL+ + L +ILH+ ELL + Q S+H+L++WL +I Sbjct: 659 NILSMIKKILFRYKIPETLLSNPSEKNSLINILHLGELLNDFSKQCHSKHSLMQWLEYNI 718 Query: 716 LEP---DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRH 772 P + +A ++R D HL++I TIH+SKGLE+P+ +LPFI+ + + F +++ Sbjct: 719 YYPQNQNQSAEHHKLRFNDDHHLIKISTIHQSKGLEFPITYLPFISCY-TNTKRFSNNQK 777 Query: 773 SFEAV--LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG- 829 ++ +L + ++D + ERL+EDLRLLYVA+TRS++HCS+G+AP++ + K Sbjct: 778 ILQSTPYANLLQSSSTLDFFDLERLSEDLRLLYVAITRSIYHCSIGIAPIIYKSRHKNTL 837 Query: 830 -DTDVHQSALGRLLQKGEPQDAAGLRTCIEALC---DDDIAWQTAQTG--------DNQP 877 TD+H SALG L+Q +P L+ C++ L + +I ++ + Sbjct: 838 HTTDLHHSALGYLIQNKKPNTPQELKQCLQKLSISSNKNITFRIISKISKKSKLYCNCTK 897 Query: 878 WQVNDVSTAELNAKTLQRLP-----GDNWRVTSYSGLQQR-----GHGIAQDLMPRLDVD 927 T L+AK Q+ + WR TSYS L++ ++ D + Sbjct: 898 TINITNQTKSLHAKKWQKPILWKTYNNIWRYTSYSELKKNIITDSSSTEYLNIQNIFDFN 957 Query: 928 AAGVASVVEEPT--LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQ 985 + + P+ LT H FP+G G F H LF+ L+F + ++ ++ +E Sbjct: 958 FDDYINNKKTPSNLLTAHTFPKGKVCGMFFHDLFKFLNFRKTINTRSLQTHMERYNINLN 1017 Query: 986 WEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP 1045 W L +WI ++ P+N ++LS++ N Q E++F L I L +LD L + +DP Sbjct: 1018 WTIPLQKWIYTIINTPINSDYLTLSKIIPENTQTELKFSLCIKNTLTPHKLDKLCKYYDP 1077 Query: 1046 LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 LS P L F V G+L GFIDL+F + +YYLLDYK+NWLG +++ YTQ + M + Sbjct: 1078 LSLRAPILNFETVTGILHGFIDLIFYWKNKYYLLDYKTNWLGNNNNFYTQTMIEKNMIQY 1137 Query: 1106 RYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 RY+LQYQLYT+ALHR+L+H+I Y YE +FGGV YLF+RG++ GIY RP+ I Sbjct: 1138 RYELQYQLYTIALHRFLQHKIQSYTYEKNFGGVYYLFIRGMNGLSFNNGIYFCRPSWEFI 1197 Query: 1166 ALMDEMFAGMT 1176 +D + Sbjct: 1198 KTLDYFISKKN 1208 >UniRef50_Q1QYD3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYD3_CHRSD Length = 1269 Score = 978 bits (2529), Expect = 0.0, Method: Composition-based stats. Identities = 489/1235 (39%), Positives = 657/1235 (53%), Gaps = 78/1235 (6%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAA---FPRPLTVEELLV 61 + L LPL G LIEASAGTGKTFT+AALY+RL+LG +PRPL E+LV Sbjct: 12 PQPLVLEHLPLAGHHLIEASAGTGKTFTLAALYVRLVLGPLPGREACDYPRPLLPPEILV 71 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLR--ETTDNPLYERLLEEIDDKAQ-----AAQWL 114 VTFTEAATAELRGRIR+ + E R L E + + LL + + Q AA+ L Sbjct: 72 VTFTEAATAELRGRIRARLKEARDWLLAPPEARHDDVLGALLTPLVEAGQTAVASAAKRL 131 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 A R MDEAA+FTIHGFCQRML +AF++G F +L++D S L + D+WR H YP Sbjct: 132 DQAARLMDEAAIFTIHGFCQRMLTRHAFDAGARFGAELLQDGSTLLTRVVEDYWRCHFYP 191 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPV--------IKAPPPDDETLASRHAQIV 226 L + + W+GP+AL + + L+ P ++AP L + Sbjct: 192 LAAHWQREIRRRWEGPEALSQALQPLLKDARPQPLWWDGERVEAPASLTTLLGDAERALA 251 Query: 227 ARI---DTVKQQW--RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 AR D+++Q W G L+ ++R + + W Sbjct: 252 ARQALEDSLRQAWDREAIAGCLNEAFSRGALNRNSYKPDELDTRLAAFEQWLATFEADDG 311 Query: 282 LPESLEKF--SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRALAEIR 336 +S +F SQ LE TK G + P HP F +D+L + ++ A + Sbjct: 312 TTDSQGRFWLSQAKLEKATKKGHDVPTHPFFARLDELAETATPFDVLAPRLLAHARDTVA 371 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEV----LAAAIRTRFPVAMIDEFQDTDPQ 392 A EKRR+G F D+L LD+AL E+ LA IR PVA+IDEFQDTDP Sbjct: 372 AMFAAEKRRQGLWEFGDLLQDLDAALDPEAAPEAAWRLAGRIRQALPVALIDEFQDTDPL 431 Query: 393 QYRIFRRIWH----HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 QYRIF RI+ T LL+IGDPKQAIYAFRGADI TY+ AR E + +TL N+R Sbjct: 432 QYRIFSRIYRAPEADADTTTLLMIGDPKQAIYAFRGADIETYLAARRETPSRFTLTRNFR 491 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES 508 S+ MV +VN+LF++ F EIPF+ V + G+ L G+ A+ W E Sbjct: 492 SSVAMVEAVNRLFARHPTPFGSDEIPFVEVAAKGQKARL-CNADGQEVAALGAWWPGDER 550 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 DYQ++MA A+++ L+ G + R VR +DI++LVR EA VR Sbjct: 551 HAKADYQASMASAARAEVQRALEG---GWHFVDEKGGQRDVRPADIAILVRKGSEALAVR 607 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL I SVYLS R SVF+T A E+L L +AV P ++ L++ALAT ++ N + Sbjct: 608 RALAEGGIRSVYLSERASVFDTALAFELLQLFEAVAQPRQDARLKAALATRLLNDNPAAL 667 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 ETL DE AW+ VE F Y + W++RGV+PMLRA+M +AE + A GER LTD+L Sbjct: 668 ETLLADELAWEREVERFADYHRQWQRRGVLPMLRAVMRDFRVAERMGARDDGERALTDLL 727 Query: 689 HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ--MRLESDKHLVQIVTIHKSKG 746 H+ EL Q +L+ EHAL+RW + ++E ++ RLESD+ LV++VTIHK+KG Sbjct: 728 HLGELAQTVSARLDGEHALLRWWHRALVEGTRQLDAEAVSQRLESDEDLVKVVTIHKAKG 787 Query: 747 LEYPLVWLPFITNFRVQE-----QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRL 801 LEYP+V LPF+ ++R E L A E + AE RL ED+RL Sbjct: 788 LEYPIVLLPFVCDYRPAEPERGTGLLEWRDPRHGRALVHGADDEQLAAAERARLDEDVRL 847 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC 861 LYVALTR+ C LGVA L R RG +H++ALGRLL A +R + A Sbjct: 848 LYVALTRAAHACRLGVAHLGRGRGT---SGCLHETALGRLLGCEADDQAHDVRERLAA-- 902 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG-------- 913 ++ + +V A +A+ D+W + SYS L Sbjct: 903 --ALSVEACPAPPGHRLRVRHALPAVASARRFNGGIDDDWWIASYSALIVDARLAPAGEE 960 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTL-TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW 972 + D LDV+ + V P + T FPRG PGTFLH L E +D + +P + Sbjct: 961 ASMTWDAPATLDVEVSREQDPVPRPAVRTLRDFPRGPRPGTFLHGLLEAVDLDRLREPAY 1020 Query: 973 -------VREKLELGGFESQWEPVLTEWITAVLQAPLN---ETGVSLSQLSARNKQVEME 1022 V +L LGGFE +W P+L +W+ L P T + L L+A + E+E Sbjct: 1021 RDELQRLVSTRLHLGGFEPEWAPLLLDWLCTALPTPFPGHAGTEIRLDGLAA--WRPELE 1078 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR-HEGRYYLLDY 1081 F+LP + A LD L+ F+PL P L ++ GMLKGFIDLVF +GR+Y+LD+ Sbjct: 1079 FWLPAHQAWSAP-LDALVSAFEPLPEPRPRLAPRKLNGMLKGFIDLVFEAEDGRWYVLDW 1137 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSN LG+ + Y +A+A AM HRYDLQY LY LALHR L R+ DYDY+ H GG YL Sbjct: 1138 KSNHLGDAPADYRPEALAEAMVEHRYDLQYVLYVLALHRLLTARLDDYDYDTHMGGACYL 1197 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 FLRGVD P QG++ RP LI +D G T Sbjct: 1198 FLRGVDGT-PGQGVFQRRPERRLIEALDAWLEGDT 1231 >UniRef50_Q65TK4 RecB protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65TK4_MANSM Length = 1205 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 431/1231 (35%), Positives = 655/1231 (53%), Gaps = 99/1231 (8%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + LIEASAGTGKTFT+A+LYLRLLL G F +PL VE++LVVTFTEAAT ELR Sbjct: 1 MNSTLLIEASAGTGKTFTMASLYLRLLLQ-AGENCFFKPLEVEQILVVTFTEAATQELRE 59 Query: 75 RIRSNIHELRIACLRET----------TDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 RIR IH + + T+N + L++ + + A Q L +AE+ MD A Sbjct: 60 RIRHRIHLAKKQLTQYAENKNKQVFYGTENEILADLVDSL-ELPVAIQRLKIAEQNMDLA 118 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A++TIHGFC+RML AF SG+ F QL++DE+ L + + WR H Y L + + Sbjct: 119 AIYTIHGFCRRMLVQYAFNSGIHFNLQLVKDETELLTRFSNELWREHFYNLSFSLTNFIH 178 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA------SRHAQIVARIDTVKQQWRD 238 K P +L+ I +++ E ++ P L + + I +K W + Sbjct: 179 RNLKSPTDVLQKIRKFVTSENLNVELNEPHLLQLEFNRFLSQYIEKNINEIKQLKTAWIE 238 Query: 239 AVGELDALIESSG----IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + E+ LIE + I + ++ +KI WA++ET+ + +PE L K+ + Sbjct: 239 SENEIQRLIEKAKTQKLIKGASYKANHLPGRYEKIRQWAQDETD-FSIPEPLSKYFSQSA 297 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIR---DLVITRALAEIRETVAREKRRRGELGF 351 D E H +F+ D + S +++ + +R+ + R K E F Sbjct: 298 VDSYLTKNEPVNHAVFKQADSAVERAQSTELYVKVILYHYIQWMRDKLDRYKASHQEKSF 357 Query: 352 DDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--QPETA 408 DD+L L A+ S E G L IR ++P AMIDEFQDTD QQY+IF +I+ Q ET Sbjct: 358 DDLLRLLKEAVVSPEHGNELVKLIRYQYPFAMIDEFQDTDAQQYQIFSKIYIESAQAETG 417 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS-QTDDA 467 ++IGDPKQAIY FRGADIFTY+KA + H+TL N+RS ++++VN+LF+ + Sbjct: 418 FIMIGDPKQAIYQFRGADIFTYLKAAQQAKYHFTLGKNYRSEGNLIHAVNQLFNFSSAQP 477 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIR 527 F++ I F V+ RF+ + + + ++L E S +A+ CA I Sbjct: 478 FLYENIEFSSVEPGK--AQGRFILNEQQEAPLGVYLGEEPS------DEQLAETCANCIS 529 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 WLQ R A + + P+ DI+VLVR+ +EA +++AL +I SVYLS++ +V Sbjct: 530 QWLQLALRERAGIQTAEKFLPLEPKDIAVLVRNAKEAELIKNALQARQISSVYLSDKSNV 589 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDG 647 F+ EA+E+L +LQA + P E + +A+AT++ L DI+ + E W+ ++ F G Sbjct: 590 FDCNEAKELLLILQACLNPFSERNIVNAIATAIFCLTGADIQHIKQHETDWEKWIDRFVG 649 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHAL 707 Y++ WR++GV+ ML L A I + L+ GERR+TD+ H++ELLQEA T ES+ AL Sbjct: 650 YQRSWRQQGVLAMLHQLFLAEQIPQKLINMPNGERRVTDLFHLAELLQEATTLNESDAAL 709 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQE 764 +RW + I ++ +RLES++ LV+IVTIHKSKGLEY LVWLPFI+ Q Sbjct: 710 LRWFERQI-RGENTQDENIIRLESEQQLVKIVTIHKSKGLEYNLVWLPFISAKAKVNPQH 768 Query: 765 QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 + Y++ + D++A D ERLAE++RLLYVALTR+ +H ++ + + Sbjct: 769 ISTYYNAQAQAVQWDMDACHN--DEVIKERLAEEMRLLYVALTRAKYHLAMALPDNFTKN 826 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVS 884 +AL L +GE A L + D Q + +Q +++ Sbjct: 827 ----------WNALLYALTRGEIGTQAKLTDEYQTKPLLDDFAQRISPANIHYYQTDEIQ 876 Query: 885 T---------AELNAKTLQRLPGDNWRVTSYSGLQQ------------------------ 911 A+ A+ +W ++S++ L Q Sbjct: 877 GGGYQQKDNHAQYVAQEFHGKIERDWTISSFTSLTQMHEWNSQKGRHEAFSPIVTTESAV 936 Query: 912 -------RGHGIAQDLMPRLDVDAAGVASVVE--EPTLTPHQFPRGASPGTFLHSLFEDL 962 I +P+++ D + +V +P FP G + GT LH FE Sbjct: 937 NFSLILDEAKDIDLTFLPKINEDKNNFSDIVTGYRQGYSPFDFPHGINVGTALHRFFEKN 996 Query: 963 DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEM 1021 +F QP+ +V+ + +W+ L +WI A+L PL N ++L+QL ++ EM Sbjct: 997 EFNQPIIDEYVKNLCQTIQLSEEWKQPLIQWIEAILTTPLFNGEPLNLAQLDKKDCIKEM 1056 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 +FYL + + L++++ + P F +++GML+GFIDLVFRHE +YY+LDY Sbjct: 1057 QFYLKLEGRFKLHSFNRLLQKYH--TIKREPYLFDEIQGMLRGFIDLVFRHESKYYVLDY 1114 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSN+LG+D + Y + + M+ H YDLQY LYTLA+HRYL+ R+ DYDY+ HFGGVIY Sbjct: 1115 KSNFLGKDMAFYARSQLTDVMKNHHYDLQYLLYTLAIHRYLKQRVTDYDYDSHFGGVIYC 1174 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 FLRG++ +P GIY+ +P LI +D +F Sbjct: 1175 FLRGMNGRNPDYGIYSAKPARELIEGLDNLF 1205 >UniRef50_A1S6V0 Exodeoxyribonuclease V, beta subunit n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6V0_SHEAM Length = 1224 Score = 972 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 464/1239 (37%), Positives = 648/1239 (52%), Gaps = 90/1239 (7%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 LD LP G RLIEASAGTGKT+TIA LYLRLLLG+G RP VEE+LVVTFT Sbjct: 6 PLDAFTLPFDGARLIEASAGTGKTYTIANLYLRLLLGIGQQ----RPFKVEEILVVTFTN 61 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AAT+ELR RIR I + CL E +++ +LL + D+ A + L LA + +DEAA+ Sbjct: 62 AATSELRDRIRRRIQDGFRLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTLDEAAI 121 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIHGFCQR+L+ AFES +LFE + D+S L A ADFWR HCYPL +IA +V Sbjct: 122 YTIHGFCQRVLSDMAFESALLFESEFTLDDSELLSMAAADFWRAHCYPLSADIAAMVQAK 181 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 + P+AL +++ L V++ D LAS + ARI ++ W+ + Sbjct: 182 FASPKALEQELKSLLGARDAVVELQMEDFSKLASGFS---ARIARLRLAWQRQAEDTLTT 238 Query: 247 IESSGIDRRKFNRS-----NQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 + ++ + ++ D ++AW+ + P + + + G Sbjct: 239 LCKLPLNGVSYGKAADGFPKLKNHWDTMTAWSLRCEGT---PPEKAMQAVAYGNIKLNKG 295 Query: 302 GETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358 G+ P L ID+LL ++ + A EI+ K R + DD+L L Sbjct: 296 GQLPGPETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLLKHL 355 Query: 359 DSAL-----------------RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 AL E L++ + +RFP+A+IDEFQDTDP Q+ IF ++ Sbjct: 356 AKALGVQGSGSGSGFEPASEIDREIALRLSSEVASRFPMALIDEFQDTDPLQFAIFSALY 415 Query: 402 HHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKL 460 QP LL+IGDPKQAIYAFRG DI TY+ AR AHY+L TN+RS+ MV +VN + Sbjct: 416 RQQPRAQGLLMIGDPKQAIYAFRGGDIHTYLGARRTAAAHYSLGTNYRSSSAMVQAVNTV 475 Query: 461 FSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM---EGESCGVGDYQST 517 FS + F+ EIPF PV ++ + PA+++ L+ + ++ Sbjct: 476 FSVRERVFLSDEIPFEPVAASDSGAKTLLIDGKTQGPALQIALLGEDPDKGLNKQTARAL 535 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 MA+ AA I L G A+L D RP+ A DI+VLVR R EAA ++DALT I Sbjct: 536 MAEDAAAHIGQLLCLATEGRAVL--ADKQRPLLAKDIAVLVRDRNEAAFIKDALTRRNIG 593 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637 +V+LS RD+VF T EA E+L +L A+ P E LR+A+AT +MG + +I N DE A Sbjct: 594 AVFLS-RDNVFATKEASELLHVLAALAQPRDEKRLRAAMATRLMGWSLSEIAAFNQDEEA 652 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697 +E F+ + Q W+K+GVMP L A + E L +RRLTD H+ ELL++A Sbjct: 653 RRQALECFERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTDFRHLCELLEQA 712 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757 G L+ AL+ W Q +L+P S+ + Q+RLES+++LVQIVTIHKSKGLEY L ++PF+ Sbjct: 713 GASLDGISALLGWFEQALLDPGSD-EAMQLRLESEQNLVQIVTIHKSKGLEYGLCYIPFL 771 Query: 758 T----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 + + YH V DL E V+ +AERL EDLRLLYVALTR V+ C Sbjct: 772 SLARDSRGKPSPLLYHKDD--RLVWDLLQTDEGVECYDAERLGEDLRLLYVALTRPVYGC 829 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 LG+A R ++V+++ALG LL + D LR E + + Sbjct: 830 RLGLANHSRMLKA-GISSEVYKTALGFLLGIDSKDCDINVLRQAAERVSSHAHGSEIIGV 888 Query: 873 GDNQPWQV------NDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP---- 922 D + ST + + R+ ++WRV SYS L +G G + Sbjct: 889 VDIIQHDLTVLESAQHESTEPPSPRKPNRIGEESWRVGSYSALIAQGAGHTEHPGDIART 948 Query: 923 --------------------RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL 962 L + + + L+ FPRGA+ G+F+H + E + Sbjct: 949 HEETTAAAIPGAGDESFSVLELPLPDEPEPASQDTGALSRFSFPRGANAGSFMHQVLELI 1008 Query: 963 DFTQPVD--PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--TGVSLSQLSARNKQ 1018 F + P + + + G ++QW+PVL W ++ APL + +L LS Sbjct: 1009 RFDAVAETLPEVLPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDEKGQFALGDLSPAQLL 1068 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 VEMEFYLP+S L L L+ + F + GMLKGFIDL F H+GR+Y+ Sbjct: 1069 VEMEFYLPVSR-LKPGALGDLLALYG----YRSDFGFDTLNGMLKGFIDLCFSHDGRFYI 1123 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 DYKSN LG+ Y + AM A+Q H YDLQY LYTLALHR LR R+A YDY+ GG Sbjct: 1124 ADYKSNHLGDTLDHYHRDAMHTAIQDHHYDLQYLLYTLALHRLLRSRLAQYDYDKDVGGC 1183 Query: 1139 IYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 YLFLRG+ P G+Y +P LI +D +F G + Sbjct: 1184 FYLFLRGMSASSPGTGVYFDKPPKLLIQALDALFEGKEI 1222 >UniRef50_A7JVG0 Exodeoxyribonuclease V n=3 Tax=Mannheimia haemolytica RepID=A7JVG0_PASHA Length = 1174 Score = 967 bits (2499), Expect = 0.0, Method: Composition-based stats. Identities = 420/1208 (34%), Positives = 613/1208 (50%), Gaps = 75/1208 (6%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P++LPL LIEASAGTGKTFTIA LYLRLLLG+G + PLTVE++LVVTFT Sbjct: 2 KNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCN-----PLTVEQILVVTFT 56 Query: 66 EAATAELRGRIRSNIHELRIACLRETT------------DNPLYERLLEEIDDKAQAAQW 113 +AAT EL+ RIR NI + + + ++ I + +A Sbjct: 57 KAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLR 116 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +AER++D A+VFTIHGFCQ+ML AFESG+ F+ L ++S L + + WR Y Sbjct: 117 LSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEEVWREQFY 176 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 P I V E P+ L + RYL E P A D +A AQ I+ VK Sbjct: 177 PQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD--IAEHLAQYQQFINEVK 234 Query: 234 QQWRDAVGELDA-----LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 W+ EL L + + + ++ ++ WA + N + P L Sbjct: 235 SYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMNQWANSQHNHF--PAGLYL 292 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP-----LSIRDLVITRALAEIRETVAREK 343 F+ + TK E P L S+ ++ + L ++ +A K Sbjct: 293 FTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSAMLQYQFLIALKAKLAEYK 352 Query: 344 RRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW- 401 + + FDD+L+ L+ AL++ +GE L+ IR +P AMIDEFQDTD QY IF +I+ Sbjct: 353 QSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAMIDEFQDTDLTQYEIFSQIFM 412 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLF 461 E ++IGDPKQ+IY FRGADIFTY++A + +TL NWRS P +V +VN LF Sbjct: 413 AENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVNNLF 472 Query: 462 SQTDD--AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 S +D F++ +I F PV++ + L Q ++ E +A Sbjct: 473 SFANDNSPFLYEDIGFHPVEADSQKGQLV-----SEQGHFVGYITE------NSKLDDLA 521 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 ++CA QI L+A +G+ + + + A DI++LVR +A +++ AL I SV Sbjct: 522 EMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQAKRIKKALAKRNIKSV 581 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 YL+ SVF + A E+ WLLQA + P L SAL +++ GL A +I +E WD Sbjct: 582 YLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWGLTAAEIHRYKENEQLWD 641 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 + V +F Y IW+++GV+PML + + I E L +R +TD+LH++E+LQE Sbjct: 642 LKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENADRLITDLLHLTEILQETSQ 701 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 LESE L+RW + + PD N QQ+RLES++ L++IVTIH SKGL+YP+VWLPF++ Sbjct: 702 ALESEAELLRWYEKQVNSPDFN-DEQQLRLESEEELIKIVTIHGSKGLQYPIVWLPFVSQ 760 Query: 760 FRVQEQ--AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 + A R+S A+ + E+ + E AEDLRLLYVALTR+ +L + Sbjct: 761 KSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAYAEDLRLLYVALTRAESQLNLVL 820 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 + S L LL GE G + IA + P Sbjct: 821 PKEISG-----------WSPLHYLLADGEI--PTGKVPVSDYFSQKRIAANLVEVAGELP 867 Query: 878 WQV--NDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ-------DLMPRLDVDA 928 + + + S+ + AKT ++TS++ L + ++ DL DV Sbjct: 868 FSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSERVMDLAQDRDVHI 927 Query: 929 AGVASVV--EEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQW 986 + + E +P QFP G GT LH FE F + +D V + E G +W Sbjct: 928 ETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDREAVAKVCEQLGLSEEW 987 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 W +L PL E L + + E +FYL + QL+ L++Q PL Sbjct: 988 IEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKNDKALHQLNALLKQHSPL 1047 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 + P L+ Q+ G ++GF+D + + E ++YL+DYKSN+LG Y ++ + M R Sbjct: 1048 AKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLGYLPQNYAKEHIQREMGRQR 1107 Query: 1107 YDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 YDLQY LYTLALHRYL R+ + YDYE FGGV YLFLR ++ E+ G+Y +P LI Sbjct: 1108 YDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLRAMNGEN-DNGVYFDKPTKQLI 1166 Query: 1166 ALMDEMFA 1173 MD +F Sbjct: 1167 EEMDRLFG 1174 >UniRef50_A1AQY7 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Bacteria RepID=A1AQY7_PELPD Length = 1203 Score = 964 bits (2491), Expect = 0.0, Method: Composition-based stats. Identities = 423/1214 (34%), Positives = 620/1214 (51%), Gaps = 68/1214 (5%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ L + L G LIEASAGTGKT+ IA LYLRL++ LT E++LVVT+TEA Sbjct: 4 LEHLGIELSGRNLIEASAGTGKTYAIACLYLRLVI--------ESDLTPEQILVVTYTEA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQ----AAQWLLLAERQMDE 123 AT ELRGRIRS I + + +P L+++++ + A L A + D Sbjct: 56 ATEELRGRIRSRIRQALDTFSGTVSKDPFLLGLVQKVNKEGPGEDIARNRLDRALKSFDL 115 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 A++FTIHGFC R L NAFESG L++ +LI D++ L + DFWRR + P + Sbjct: 116 ASIFTIHGFCLRALQDNAFESGSLYDTELITDQADLLQEVVDDFWRRTFFSEPAPLLGYA 175 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 T P A + + G + P D ++ S + VK+ W ++ E+ Sbjct: 176 LRTKLSP-AYSSTFLKGMLGNPKLEILPNFDLGSIPSLQEECETLFSLVKEIWLNSHTEI 234 Query: 244 DALIES-SGIDRRK--FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 LI S G+ R K +N + + A+A + N + L K + K Sbjct: 235 RELIRSDKGLSRAKGAYNPDTLPPLFEAMDAYARSD-NPFDLFSDFSKLCTIGILKGKKP 293 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 G HP F+ +QL + LA E VA K R FDD+L+ L Sbjct: 294 TGAPLSHPFFDLCEQLRQRVGQRFLALKAELLAFAAEHVAARKSERNIRFFDDLLTSLYE 353 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 AL G+ A +R ++ A+IDEFQDTDP Q+ IFR+I+ P L LIGDPKQAIY Sbjct: 354 ALGGPRGDDFALCLRQKYRAALIDEFQDTDPVQFDIFRKIYA-DPAHPLFLIGDPKQAIY 412 Query: 421 AFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV 478 +FRGADIF Y+KA + E +TL +NWRSAP ++ + N LF F+F EI + V Sbjct: 413 SFRGADIFAYLKAAAGVEATRRFTLTSNWRSAPALLAAFNALFDNDFKPFLFGEIAYHSV 472 Query: 479 KSAGKNQALRFVFKGETQPAMKMWLM----EGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 S + + R + +++W + EG++ VG ++ AA+I L+AG Sbjct: 473 ASGLEEEGNRLTWAEADDAPLQLWCVPPDEEGKASNVGRANKSVPMAVAAEIARLLRAGM 532 Query: 535 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 GEAL+ D RPV I+V+VRS ++A +++AL L IPSV S+ S+F T EA+ Sbjct: 533 AGEALI----DGRPVLPEHIAVIVRSHRQAGYIQEALKNLSIPSVMRSDA-SIFTTREAR 587 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRK 654 ++ LL A+ P E LR+AL T + GL DI TL +E W+ + +F Y QIW + Sbjct: 588 QVCTLLAALAAPGNEWKLRAALVTDIFGLTGDDIATLLEEEPLWEEWLSKFQEYHQIWLE 647 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQ 713 RG M M++ L+S + LL GERRLT++LH E+L A + L W + Sbjct: 648 RGFMVMVQTLLSREGVRGRLLRKPDGERRLTNLLHCCEILHAASQERSLGPEGLAVWFGE 707 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 773 I D++ Q+RLE+D+ V+I+TIH SKGLEYP+V+ PF+ ++ Sbjct: 708 RISAGDASEG-YQIRLETDEKAVKILTIHVSKGLEYPIVFCPFLWAGVRSDEEVVTFHDD 766 Query: 774 FEAVLDLNAAPESVD--LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831 F V D +A + + LA+ E LAE+LRLLYVALTR+ + C L +V G + +T Sbjct: 767 FRLVKDYGSADQELHRVLAQKESLAENLRLLYVALTRAKFRCYLVTGKIVDSTGRNRPET 826 Query: 832 D-----VHQSA-----------LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ-TGD 874 H SA LG+ ++K ++ + A D I+ + G Sbjct: 827 SPLAYLFHASATTRNADDTVGQLGQEVKKLSAEEMEQQLRAVAARQQDAISVSSMPEAGG 886 Query: 875 NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASV 934 + ++ L+ K + +WRV+S++ L H ++ +P D A ++ Sbjct: 887 AERYEPFHDGGERLSEKKFNAMIERDWRVSSFTSLA--SHDLSTTELPDRDEAGAKETAL 944 Query: 935 VEEPTLTP-----HQFPRGASPGTFLHSLFEDLDFTQPV---DPNWVREKLELGGFESQW 986 P P FP+GA G FLH +FE LDF+ + V L+ F ++W Sbjct: 945 PPLPEADPREKSIFTFPKGAHAGIFLHEIFEKLDFSGSSGEKTTDLVAACLKKHCFGAEW 1004 Query: 987 EPVLTEWITAVLQAPL--NETGVSLSQLSARNKQVEMEFYLPIS---EPLIASQLDTLI- 1040 + +++ I V+ E SLS L E+EF+ P+ ++ L + Sbjct: 1005 QSTISDMIENVVSTQFSAPEGPFSLSDLRQGKWLAELEFFFPLKFVTSNILKECLGSWSS 1064 Query: 1041 -RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 L A L F +GM++GF+D+VF H GR+YL+D+KSN LG AY ++A+ Sbjct: 1065 GCTAVNLQALAQSLRFRPAKGMVRGFMDMVFEHGGRFYLVDWKSNHLGYRVEAYGEKALT 1124 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ-GIYTT 1158 +AM + Y LQY LYT+AL+RYL RI +Y YE HFGGV+YLFLRG+D+E + G++ Sbjct: 1125 SAMDQNLYSLQYLLYTVALNRYLSLRIKEYRYETHFGGVLYLFLRGMDRERGEAFGVFRD 1184 Query: 1159 RPNAGLIALMDEMF 1172 P AGLI + Sbjct: 1185 TPPAGLIHEVTNCL 1198 >UniRef50_Q3IJ14 Exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=2 Tax=Alteromonadales RepID=Q3IJ14_PSEHT Length = 1213 Score = 961 bits (2483), Expect = 0.0, Method: Composition-based stats. Identities = 440/1231 (35%), Positives = 645/1231 (52%), Gaps = 87/1231 (7%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL----GGSAAFPRPLTVEELLV 61 + L+PL +PL G+ LIEASAGTGKT+TI LYLR LLG+ ++ +PL+VE++LV Sbjct: 2 QALNPLTMPLTGQSLIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQILV 61 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT+AAT E++ R+R+ I R A L + + L ++ +DDK +A L A + M Sbjct: 62 VTFTDAATQEIKDRVRNRIITARDALLGQDPKDELIAGVIAAVDDKHRAFDLLDAAAKSM 121 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEAA+FTIHGFCQRML +AFESG+ F + I DE + + DFWR YPL +E Sbjct: 122 DEAAIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKEKTD 181 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 + + P+AL ++ L I D+ +R I+ R+ K+ + Sbjct: 182 AILGVFAAPEALFGKVSSILNKANAQITPQVNLDDVWQARDEYII-RVPAFKKAVLE--Q 238 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES---LEKFSQRFLED-- 296 E A I+ SG+ K + + + A+ ++ S E +S L D Sbjct: 239 EFIAAIKGSGLSGSK--TPGRKGSLAALEAFCLGGDLFFEFGTSKYSFEVWSSENLSDIS 296 Query: 297 RTKAGGETPRHPLFEAIDQLLAEPLSIRD----LVITRALAEIRETVAREKRRRGELGFD 352 K HPL DQL A +I V+ A ++ V + K+ + + D Sbjct: 297 NYKKNQPLFTHPLLTEFDQLAALNNTINQGLAIAVVQHAAKWVKAAVIKRKQEQSVITPD 356 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLI 412 D+LS L SAL +E G VLA I FPVAMIDEFQDTDP QY IF +I+ + T L +I Sbjct: 357 DLLSNLHSALNNEQGNVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYQQE-HTTLAMI 415 Query: 413 GDPKQAIYAFRGADIFTYMKARSEVHAH--YTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 GDPKQAIY FRGADIFTY+ A+ V +TL TN+RS+ +V+SVN LF + ++F++ Sbjct: 416 GDPKQAIYGFRGADIFTYIGAKEAVQKQQQFTLGTNFRSSSDVVSSVNSLFGKHANSFIY 475 Query: 471 RE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG-------ESCGVGDYQSTMAQVC 522 + IPF V + GK F+ G+ A + + + G Q +A Sbjct: 476 NDAIPFNAVAAKGKKADESFLIDGQPATAFEFCVFSDTAADEKNKPTGKAIGQQHLATFF 535 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A +I L ++G A + +PV A+DI +LVR R EA ++ AL+ +I SVYLS Sbjct: 536 ANKIVTLLTQAEQGRACI----GEKPVSAADICILVRDRVEAQIMKKALSTAKIASVYLS 591 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 R+SVF + +L L A+ E+ LR LA + L+ +I L +DE W + Sbjct: 592 -RESVFSQELSHHLLNFLTALHGQYDESLLRGVLAGPLFCLSYNEIYALADDEAQWQEHL 650 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG-ERRLTDILHISELLQEAGTQL 701 F IW K+G M ML LMS ++ ER LTD H+ E+LQ+ +L Sbjct: 651 NFFAQLSHIWNKQGAMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIEL 710 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR 761 E L+RW +Q + + D + Q+RLESD +LV+IVT+H SKGLEYPLV++PF + +R Sbjct: 711 EGTLRLLRWFAQKVSQQD--GETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYR 768 Query: 762 VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 ++A YH+ + + DL+ +++ AE ERLAEDLRLLYVALTR+V C++G+ + Sbjct: 769 ETKEALYHNNGAL--IYDLSKGDDALQKAEQERLAEDLRLLYVALTRAVHFCAIGMYNIG 826 Query: 822 RRRGDKKGDTDVHQSALGRLLQKG-EPQDAAGLRTCIEALCDDDIAW-------QTAQTG 873 + + + + SALG +L G E + R + C + + Sbjct: 827 QGQSSRLA---IQSSALGHVLFAGLEITSSQIWRNHLADFCSEHTGMDYQQFTSEDLLAQ 883 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS 933 + + + L+ + NWR TS+S L + H + + Sbjct: 884 GTLSFNNSADAQQTLSINNVTANIERNWRATSFSALSFKKHIDHLAPGRSDEDHEKDEFA 943 Query: 934 VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD---------PNWVREKLELGGFES 984 V E + + FP+GA PG+ LH +FE +DFT P++ ++ LE Sbjct: 944 VQEGEAPSVYSFPKGAKPGSCLHEIFEQIDFTSPIEHPVNKEHNLAEVIKRSLEKYHISE 1003 Query: 985 QWEPVLTEWITAVLQAPLNETG----------------------VSLSQLSARNKQVEME 1022 W+ + +WI VL PLN+ +SLSQL+ + VEME Sbjct: 1004 HWQDITEQWILDVLACPLNDDSNANINTSGNDTSANSSSVNSNGLSLSQLAPSDCLVEME 1063 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 F LP+ + L A QL+ ++ + LEF V+G+LKGFIDL+F H+G+YY+LDYK Sbjct: 1064 FNLPL-KSLSAPQLNEILIKH--FGFEHSKLEFSHVKGLLKGFIDLIFCHQGKYYILDYK 1120 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 SN+LG +++ Y + AM +H+Y LQY +YT+ALHR L+ RIADY E H GGV Y F Sbjct: 1121 SNYLGSNAADYEHDMLEQAMSSHQYHLQYLIYTVALHRLLKQRIADYSVETHLGGVYYTF 1180 Query: 1143 LRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 LRG+ QG+Y + + ++D +F+ Sbjct: 1181 LRGM---PAGQGVYFKKLTTEQVTILDGLFS 1208 >UniRef50_C8KZ30 Exodeoxyribonuclease V beta chain n=2 Tax=Actinobacillus minor RepID=C8KZ30_9PAST Length = 1204 Score = 960 bits (2482), Expect = 0.0, Method: Composition-based stats. Identities = 426/1229 (34%), Positives = 649/1229 (52%), Gaps = 85/1229 (6%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 +TLDP+ LPL LIEASAGTGKT TI LYLRLLLGLG + +PLTV ++LVVT Sbjct: 2 TMKTLDPITLPLNCSSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVT 61 Query: 64 FTEAATAELRGRIRSNIHELRIACL-----RETTDNPLYERLLEEIDDKAQAAQWLLLAE 118 FT+AAT ELR RIR NI +ET + +E+L E++++K +A L +AE Sbjct: 62 FTKAATEELRERIRENIQACYTFFQERLSGKETQSDDFFEQLFEQVENKEEALLRLRIAE 121 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 R++D A+VFTIH FCQ+ML AF+SG+ F+ +L D+S L + + WR YP+ + Sbjct: 122 REIDLASVFTIHSFCQKMLFQFAFDSGVRFDIELKADQSELMLRLAQEVWREQFYPMGLK 181 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVI-KAPPPDDETLASRHAQIVARIDTVKQQWR 237 Q++ + K PQ L+ I YL P + K + ++ + +K WR Sbjct: 182 ETQIIAQELKTPQEALKLIRSYLNDALPELGKQQQIFSQPISDYLNEYQRFFTELKDYWR 241 Query: 238 DAVGELDALI-----------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 + ++ I E + R+ + ++ WI + W E +++S+ + Sbjct: 242 EYRADIVTPIQNELEKKYKTGEKKALSRQSYKKNLVENWIKTVDQWVESDSSSFP-ANTF 300 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS-----IRDLVITRALAEIRETVAR 341 E+F Q+ L ++ + GGE P F L + I+ +++ L +RE +A Sbjct: 301 ERFCQQMLIEKAEEGGEPLTSPHFAKNQAFLTAYQTQFEGKIKPVLLYHFLLSLREKIAE 360 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 + E GFDD+L L+ AL+ E GE LAA IR +FP AMIDEFQDTD QY IFR+I+ Sbjct: 361 HQIHYAERGFDDLLKMLNQALKGERGEQLAAQIRAQFPFAMIDEFQDTDKTQYDIFRQIF 420 Query: 402 HHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 + ++IGDPKQ+IY FRGADIFTY++A ++ TL NWRS P +V SVN+ Sbjct: 421 MSEKAENQGFIMIGDPKQSIYKFRGADIFTYLEAANQAQEKRTLSKNWRSFPKVVESVNQ 480 Query: 460 LFS----QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 LFS + F+ ++I F PV++ F F+ + +L + Sbjct: 481 LFSFPQHKEASPFLHKDIHFQPVRAK------EFTFQLMGSEHVICYLQTEFD------E 528 Query: 516 STMAQVCAAQIRDWLQAGQR--GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 A+ CAAQI+ L+A Q +N +A DI+VLVRSR +A+ V++AL Sbjct: 529 EQAAEHCAAQIQLQLKAMQEKGFGVEELNDSSKNIFQAKDIAVLVRSRNQASLVKNALAQ 588 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 I SV+LS + SV+++ A ++ +L+A + P + TL SAL + + GL A ++ L + Sbjct: 589 RGIKSVFLSEKSSVYQSEVAYDLAVILKACLHPYHQKTLLSALGSHLWGLTAFELYQLKH 648 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 DE W+ V F Y+Q+W+K+GV+ ML L I + L + ER +TD+ H++EL Sbjct: 649 DESVWESYVANFVVYQQLWQKQGVLAMLHQLFLNEGIIQRLKSRENAERLITDLFHLAEL 708 Query: 694 LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 LQ ++E+E AL+RW +H LE D + +RLES+++LV+IVTIH SKGL+YP+VW Sbjct: 709 LQSGSQEVENETALLRWYERH-LEDDEENDAYTLRLESEENLVKIVTIHGSKGLQYPVVW 767 Query: 754 LPFITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVDLAEAE-RLAEDLRLLYVALTR 808 LPF+ + + A YHD + D N E + + AEDLRLLYVALTR Sbjct: 768 LPFVGKNSYENRNGGLATYHDEED-QKQWDFNEKDERIQRLRNQAEFAEDLRLLYVALTR 826 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA---LCDDDI 865 + + +L + + +A+ LL GE I + +I Sbjct: 827 AEYQMNLILPAHFSK----------GWNAMHYLLSNGELALDNREEAAISTEDYIKAKNI 876 Query: 866 AWQTAQTGDNQP---WQVNDVSTAELNAKTL-QRLPGDNWRVTSYSGLQQRGH------- 914 + + W+ L+ + R+P ++TS++ L Sbjct: 877 PCKIEHLPEQPRFDDWRAEADQQEVLSVQPFEHRIPQREGQITSFTALYSYHEWKRQSKD 936 Query: 915 -----GIAQDLMPRLDVDAAGVASVVE----EPTLTPHQFPRGASPGTFLHSLFEDLDFT 965 + DL D +G+ E + L + FP G G LH FE DF Sbjct: 937 HNEIGSLLTDLAQDYDQSVSGLTQNDELEQLDTALNAYHFPHGTKIGNTLHQFFEHYDFQ 996 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 Q V+ + E + W + +W V P E VSLS+++ ++ E +F+L Sbjct: 997 QAVEKTEIIALCEKLALDEVWVEPICQWFEKVRTTPFGEDLVSLSEIAQESRLNEWQFFL 1056 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 ++ S+L+ L++++ L+ PPL+ + G ++GFID + + +G++Y++DYKSN+ Sbjct: 1057 RLNNEDWVSELNHLLKEYSELAKHLPPLKLPDLEGFVRGFIDCIAKVKGKFYVIDYKSNF 1116 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLR 1144 LG Y+ + +A M +RYDLQY LYTLA+HRYL+ R+ + YDY+ FGGV YLFLR Sbjct: 1117 LGYLPQDYSTENLAKTMGQYRYDLQYLLYTLAVHRYLKGRLGEQYDYQRDFGGVAYLFLR 1176 Query: 1145 GVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 G++ PQ G+Y +P+ LI +D +F Sbjct: 1177 GMNGS-PQSGVYFDKPSLALIEGLDRLFN 1204 >UniRef50_A6VNJ9 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pasteurellaceae RepID=A6VNJ9_ACTSZ Length = 1227 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 459/1254 (36%), Positives = 664/1254 (52%), Gaps = 119/1254 (9%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P+ PLQ LIEASAGTGKTFT+A+LYLRLLL G AF PLTVE++LVVTFT Sbjct: 4 QHLNPISTPLQTTTLIEASAGTGKTFTMASLYLRLLLQ-AGDNAFSVPLTVEQILVVTFT 62 Query: 66 EAATAELRGRIRSNIH--ELRIACLRETTD----------------NPLYERLLEEIDDK 107 EA+T EL+ RIR+ IH + + A RET D L +R L ++ D Sbjct: 63 EASTEELKERIRARIHLAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKL-DP 121 Query: 108 AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF 167 +A + L AE+ MD AAV+TIHGFC+RML A SG+ F +L+ DE+ L + DF Sbjct: 122 NEAFRRLGFAEQNMDLAAVYTIHGFCRRMLMQYAVNSGIHFNLELVTDETDLLNRLANDF 181 Query: 168 WRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR---HAQ 224 WR Y + + + + PQ +L+ I YL+GE + P T+++ + Sbjct: 182 WREQFYGQSFVVTEFIHRKLESPQQVLKKIRAYLKGETLKVSVNRPHLLTMSTAEFLQQE 241 Query: 225 IVARI-------DTVKQQWRDAVGELDALIESSG-----IDRRKFNRSNQAKWIDKISAW 272 + + D +K W D E+ AL E++ + KF R KI AW Sbjct: 242 LAVHLAGSDNIPDELKSAWTDNFAEISALFEANYAGASVFNGNKFKRDYFIARTAKIQAW 301 Query: 273 AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIR-------D 325 A+ E +P+ L F+Q +L G HP F+ + + A + + Sbjct: 302 ADSERR--DIPDELWYFTQDYLNGAVLKGKTAFSHPFFDYLAEQKARIEAAQTQLDLDEK 359 Query: 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 +++ L + E ++ KR E FDD+L L +AL+SE GE LA IR ++P AM+DE Sbjct: 360 ILLFHYLRTLNERLSAYKRHHPEKSFDDLLRLLKNALQSERGEQLATFIRHQYPFAMVDE 419 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLD 444 FQDTD QQY+IF I+ ++P+ ++IGDPKQAIY FRGADIFTY+KA + +TL Sbjct: 420 FQDTDEQQYQIFSAIYVNRPDCGFMMIGDPKQAIYQFRGADIFTYLKAAKDAEQERFTLS 479 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS ++ +VN LF AFM+ +I F PV +AGK+QA FV++G Q M +L Sbjct: 480 KNYRSDGSLIRAVNGLFD-FPAAFMYDDIRFEPV-AAGKDQA-HFVWRGAQQAPMAFYLG 536 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL-----MNGDDARPVRASDISVLVR 559 + A+ CA IR WL + +A + +R +I+VLVR Sbjct: 537 S---------REQAAEYCADNIRQWLTSADENQAGFVMDTAQDNGRNLRLRPENIAVLVR 587 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 +A +++ AL I SVYLS+R +VF+ EA+E+ ++L A + P E + +ALAT Sbjct: 588 KGSDAEKIKSALQRRGIASVYLSDRTNVFDCAEARELAFILAACLNPFSERHIMNALATG 647 Query: 620 MMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARN-------IAE 672 + + ++ + D + F+ Y++IWR++GV+PML + + I Sbjct: 648 IFAFSMAQLQQIKRQAELLDGWMTRFEDYQRIWRRQGVLPMLHRIFLDKGKRGEQADIVG 707 Query: 673 NLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 + A A ERRLTD+LH++ELLQEA ESE AL+ W + I D A QQ+RLES+ Sbjct: 708 QIAAQANAERRLTDLLHLAELLQEAAVLHESESALLSWFERQIQGKDRQA-EQQVRLESE 766 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEAVLDLNAAPESVDL 789 ++LV+IVTIHKSKGLEY LVWLPF+ E + +HD+ + EA+ D+NA + D+ Sbjct: 767 RNLVKIVTIHKSKGLEYDLVWLPFLGFDDVKNRDEISIFHDKDA-EALWDMNARHQ--DI 823 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR--------L 841 + E+LAE++RLLYVALTR+ + + +A G K+ + AL R + Sbjct: 824 SAKEKLAEEMRLLYVALTRAKYQ--VAMALPAEFGGKKESYWNPVWYALSRGEIGDGMKI 881 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 K E Q A L +EA ++ +T W + L+A T NW Sbjct: 882 TGKAEKQTAVLLSAHLEA--ENYTLETIPETVSGDKWLPQTNAEVSLSAATFTGKIEQNW 939 Query: 902 RVTSYSGLQ------QRGHGIAQ--------DLMPRLDVDAAGVASVVEEPTLTPHQFP- 946 VTS++ L +R HG D D + EE P Sbjct: 940 GVTSFTALSRMHEQNRRFHGEESAVEFTAIFDDALDYDEQQDVFSPTDEEANALWRNLPA 999 Query: 947 --------RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVL 998 GA G LH FE DF+QP++ + + + W L W+ AVL Sbjct: 1000 EYSPLALKGGAKFGVILHRFFEKHDFSQPIEDAELLALCQGLQLDETWIQPLKMWLEAVL 1059 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 PL+ G L+ + ++ EM+FYL + + L+RQ+ PL P + Sbjct: 1060 TTPLS-AGFKLTDIRPQHCLKEMQFYLNLDRTFDVKAFNLLLRQYHPL--YQQPYLLDDI 1116 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 RGML+GFIDLV+RH+G+YYLLDYK+N L AY+++ + +Q H YDLQY LY+LAL Sbjct: 1117 RGMLRGFIDLVYRHDGKYYLLDYKTNLL----PAYSEERIRTDIQQHYYDLQYLLYSLAL 1172 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 H +L+ R+ YDYE HFGGVIY ++RG+D + G++TTRP A LI ++E+ Sbjct: 1173 HCFLQRRLPAYDYETHFGGVIYAYVRGMDGSG-KTGVFTTRPAARLIRGLEELL 1225 >UniRef50_A4JS84 DNA helicase/exodeoxyribonuclease V, beta subunit n=9 Tax=Proteobacteria RepID=A4JS84_BURVG Length = 1264 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 464/1261 (36%), Positives = 661/1261 (52%), Gaps = 107/1261 (8%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ + LDPLR PL G LIEASAGTGKTFTIA LY+RL+LG A PLT E+LV Sbjct: 11 TNAPQPLDPLRFPLSGRSLIEASAGTGKTFTIAMLYVRLVLGHEPPGARAEPLTPPEILV 70 Query: 62 VTFTEAATAELRGRIRSNIHELRIACL--------RETTDNPLYERLLEEID--DKAQAA 111 VTFT+AAT ELR RIR+ ++E + + L L + D A Sbjct: 71 VTFTDAATKELRDRIRARLNEAAACFQVEADAVTPQGAGETDLLHALRSDYPPSDWPACA 130 Query: 112 QWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 + L LA MD+AAV TIHG+C RML +AF+S LF Q L D++ L + D+WR Sbjct: 131 RRLQLAAEWMDDAAVSTIHGWCNRMLREHAFDSDSLFSQALETDQTELLAEVVRDYWRTF 190 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRH--AQIVARI 229 PL A V + GP AL + L + + A PD ASR+ A+ +A++ Sbjct: 191 MTPLGAADAAAVAKWIPGPGALQAQLRNLLALASQLPAAAAPDATLAASRNERARSLAQL 250 Query: 230 DTVKQQWRDAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ-LPESLE 287 W D + LDA + R + + +WID + WA + ++ L E Sbjct: 251 KAPWHAWPDQMANVLDAARDDGHFRPRNLRKGDCDRWIDALRRWAGDSSSEEPSLMSGWE 310 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSI---RDLVITRALAEIRETVAREKR 344 K + L + + G P HP F A++ L E ++ +++ A + A E+ Sbjct: 311 KLTPDGLANACEPGAPVPAHPGFLALETLRVELAALPTAHAALLSHAAQWVAARFAAEQA 370 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 RR ++GFDD+L+RLD+ALR +GE LA IR +FPVA+IDEFQDTDP QYRIF ++ Sbjct: 371 RRAQMGFDDLLTRLDAALRGPNGERLADVIRKQFPVALIDEFQDTDPVQYRIFDAVYRAD 430 Query: 405 PE---TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKL 460 AL+LIGDPKQAIYAFRGADI TY+ AR +TL N+RS+ MV++ N Sbjct: 431 TADAWRALILIGDPKQAIYAFRGADIHTYLAARRSCDGRLHTLAKNFRSSHAMVDATNHC 490 Query: 461 FS-----QTDDAFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLM----EG 506 F+ + AF+FR +PF V + G+ + FV G PA+ W + +G Sbjct: 491 FAVAEARAGEGAFLFRRSGDNPVPFSTVSAQGRAEV--FVVNGAAPPALTAWWLPPADDG 548 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 + Y ++A CA ++ L GQRG+ D +P+R +DI+VLV +R EA Sbjct: 549 KPTTKTAYLESIAASCATEMVRLLNLGQRGDTGFAGKDGLQPLRPADIAVLVNNRGEADA 608 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 +R AL + SVYLS+R SVF+ +A E+ L A P+ +R+AL+T+ +GL Sbjct: 609 IRGALAARNVRSVYLSDRSSVFQCAQAAELQHWLAACADPDDGRLVRTALSTATLGLGWA 668 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT--------A 678 +++ E AW+ V +F GY + WR++GV+PMLR ++ + LL T Sbjct: 669 ELDARFGSEIAWEACVLQFRGYHECWRRQGVLPMLRRFLNDFGVPARLLGTHADGRQGVP 728 Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI---LEPDSNASSQQMRLESDKHL 735 GGER LTD+LH++ELLQ+A ++ H +R+L+ + D+ + + Q RLESD L Sbjct: 729 GGERILTDLLHLAELLQQASAMIDGLHGQIRYLADQRAASEDSDAGSDTVQTRLESDGDL 788 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQE----QAFYHDRHSFEAVLDLNAAPESVDLAE 791 V+IVTIHKSKGLEYPLV+LPF R + +HD + E + L+ +++ + Sbjct: 789 VKIVTIHKSKGLEYPLVFLPFACAHRPAKATDLPLKWHDEND-ELRISLDGGRGALEQVD 847 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA 851 ERL EDLR LYVALTR+ +G+APL + ++A+G L+ +P Sbjct: 848 RERLGEDLRKLYVALTRARHATWIGMAPLE----------ALERTAIGYLIGGTQPLAGG 897 Query: 852 GLRTCIEALCD--DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL 909 GL ++ ++IA A + + A+ R+ + W + SYS L Sbjct: 898 GLEDLLQTAFGACENIAVIPAPEPGGERYTPRIDEARRGAARQSARVVREPWWIASYSSL 957 Query: 910 QQRGHGIAQDLMP--------------RLDVDAAGVASVVEEP------TLTPHQFPRGA 949 + G + P DVD A T H FPRG+ Sbjct: 958 RTAGKNHREHAAPDTPGEDGFNEASAAERDVDQQPAAETPRHAPMPDANASTLHDFPRGS 1017 Query: 950 SPGTFLHSLFEDL---DFTQ-PVDPNWVRE----KLELGGFESQWEPVLTEWITAVLQAP 1001 G+FLH L E F + D +RE + + G++S W LT+ + ++ P Sbjct: 1018 EQGSFLHDLLEWAAAHGFARIAADREALREVVARRCSVRGWQS-WIDPLTDLVMQIVSTP 1076 Query: 1002 L--------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 L T + L+ L+ EMEF+ ++ + + LD L+ A PPL Sbjct: 1077 LVLRGGHGIEPTSIELAALATA--VGEMEFWF-AAKHVDTAALDRLVCARTLDGAERPPL 1133 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 + + GMLKGF+DLVF HEGRYY+ DYKSNWLG D + YT + + A M RY+LQY L Sbjct: 1134 DPATLNGMLKGFMDLVFEHEGRYYVADYKSNWLGADDTGYTAEKIRAQMLRSRYELQYVL 1193 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 Y LALHR L+ R+ DYDY+ H GG IYLFLRG++ P QGI+ +P LI +D +FA Sbjct: 1194 YLLALHRLLKARLPDYDYDKHVGGAIYLFLRGLNA--PTQGIFAEKPPRELIERLDALFA 1251 Query: 1174 G 1174 G Sbjct: 1252 G 1252 >UniRef50_Q1N2R0 Exodeoxyribonuclease V beta chain n=1 Tax=Bermanella marisrubri RepID=Q1N2R0_9GAMM Length = 1184 Score = 953 bits (2463), Expect = 0.0, Method: Composition-based stats. Identities = 409/1203 (33%), Positives = 639/1203 (53%), Gaps = 54/1203 (4%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + L L PL+G LIEASAGTGKTFTIAALYLRL+LG G + P++ E +LVVTF Sbjct: 3 PQKLSLLDAPLKGISLIEASAGTGKTFTIAALYLRLVLGHGCN-----PISPENILVVTF 57 Query: 65 TEAATAELRGRIRSNIHELRIA-CLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 T+AAT ELRGRIR+ + + A ++ + +P LL+E+ D A + L A + MD Sbjct: 58 TKAATEELRGRIRNRLRQAYNAIQTQDESLDPFVFSLLKEL-DHTSALERLKDAVQIMDI 116 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 AA++TIHGF Q++L+ + ES + E +LI D+ + A D WR+ YPL +V Sbjct: 117 AAIYTIHGFAQKVLSQYSVESHVDDEFELILDQQEIEMTAVNDVWRKFVYPLSEAELDIV 176 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 + W P LLRD++ ++ + + + + + H + D Q W+D Sbjct: 177 LDAWGSPSVLLRDVSTLVRRDVEFKDSNIKNLQDIDVAHKRFKDAFDKFCQDWQDQGQAF 236 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 I + + F ++ ++ + + + + + F++ ++ GE Sbjct: 237 FNAIYDNEYASKSFT-NHLSRRKQHLDDFTSGAYVK-DIEKYIGYFTESGIKKSVTKKGE 294 Query: 304 TPRHPLFEAIDQLLAEPLSIRD-------LVITRALAEIRETVAREKRRRGELGFDDMLS 356 H + + ++ A L ++ L R IR + K+ + L DD+L Sbjct: 295 PTDHEMILSFTKMHAALLQWQEQKQQATLLWKIRFTEAIRTRLDELKQAQSVLCADDLLK 354 Query: 357 RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDP 415 ++ +L S E L + +FP+AM+DEFQDTD QYR+F +++ PE T +IGDP Sbjct: 355 QVLRSLGS--SESLCTLLCQQFPMAMVDEFQDTDSTQYRVFSKLYSETPEETGFFMIGDP 412 Query: 416 KQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE-IP 474 KQAIY FRGAD+FTY++A++EV ++L N+RS+P +V++VN LF D F+F + IP Sbjct: 413 KQAIYKFRGADVFTYIQAKTEVEREFSLQDNYRSSPSLVSAVNALFQCHDRPFIFDDSIP 472 Query: 475 FIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAG- 533 F PV +A K+Q ++ + + + ++ +S G+ D ++ +A A Q+ L +G Sbjct: 473 FYPVGAASKSQLIQSRDIDNSACVFQTFDIDSDS-GIEDIRTEVAHGVAEQVSVLLSSGL 531 Query: 534 -QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 Q + + DD R + + DI++LVRS +A V+ AL + +V+ ++S++ + E Sbjct: 532 EQSTKVFDSDLDDYRDISSRDIAILVRSAHQARLVKQALDERGVAAVF-KGQESLYNSAE 590 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIW 652 A + LL ++ E + R+ALA + L+ + T E W+ +E ++IW Sbjct: 591 ALAVYELLNSL-HSLSEQSYRNALANPVWMLSLDQLATHLQHEVCWEEELELMYECKRIW 649 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLS 712 K+G+MPML + +R + + A GERR+T+ LH++ELLQE ++L+ L+ W Sbjct: 650 IKQGIMPMLMHWLHSRGLPQQWFALTDGERRITNYLHMAELLQEQASRLQGMQGLLTWF- 708 Query: 713 QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRH 772 +H L+ + Q+RLESD++LV IVT+H SKGLEYP+V+LP+ + Q Y D Sbjct: 709 EHKLQNTYQSEEAQLRLESDENLVSIVTVHSSKGLEYPVVFLPYAWSMSKQVDVIYFDEI 768 Query: 773 SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 + DL + V L E+LAE++RLLYV +TR+ + V +KK ++ Sbjct: 769 TQSLCCDLEDVHKDVRL--KEQLAEEVRLLYVGVTRASSQLYVTVPTHC---DNKKINST 823 Query: 833 VHQSALGRLL-----QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 + S L +L K E A L I L Q P+++ + Sbjct: 824 LLASPLFHVLCGSNENKVEAAPADQLANAISTLEKKS--EQGVFAQQVLPYELTSFKAPD 881 Query: 888 LNAK----TLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV--ASVVEEPTLT 941 + W ++S+S L + H ++D + +++ L Sbjct: 882 PEGDWQTTQFEGKIKQPWFMSSFSSLVRGLHVPHHQRFNFDEIDDDLIIPEVPLDKDILN 941 Query: 942 PHQFPRGASPGTFLHSLFEDLDFTQPVDPNW--VREKLELGGFESQWEPVLTEWITAVLQ 999 P FP+GA G FLH+LFED+DFT+P+ V+E L GFE +W + EW +L Sbjct: 942 PFTFPKGAHAGNFLHNLFEDIDFTRPMIDQVSTVQELLMRYGFEEKWLETVLEWSQKILH 1001 Query: 1000 APLNE----TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS--AGCPPL 1053 APL + +SLS L K VEMEFY P++ L S+ + L+R++ L L Sbjct: 1002 APLQDQTLDKPISLSDLQPDQKSVEMEFYFPVN-GLSCSKFNALLRKYPVLGTVQQVQDL 1060 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 +F ++GMLKGFIDL F +GRYY+LDYKSN+LG++ + Y + AM AM HRYD+Q L Sbjct: 1061 DFDFLQGMLKGFIDLTFECQGRYYVLDYKSNFLGDELTHYHRNAMTQAMAEHRYDVQLVL 1120 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 YTLALHR L+ + +Y+Y+ H GG YLFLRG+ E Q G + +PN LI +D M + Sbjct: 1121 YTLALHRLLKLTLPNYNYDEHMGGGFYLFLRGISGES-QYGQFYHKPNRLLIEALDAMIS 1179 Query: 1174 GMT 1176 G Sbjct: 1180 GDN 1182 >UniRef50_Q2SQD6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD6_HAHCH Length = 1181 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 436/1214 (35%), Positives = 627/1214 (51%), Gaps = 80/1214 (6%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 LDP+ +PLQG +LIEASAGTGKT+TI LYLRLLL R L V ++LVVTFT Sbjct: 2 RPLDPIAIPLQGVQLIEASAGTGKTYTITTLYLRLLL--------ERQLDVRQILVVTFT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQMDE 123 AAT ELR RIR I E+ + L+ + + E L + + A L A MDE Sbjct: 54 RAATEELRTRIRQRIREV-MQTLQAPPETDIAEWLQPWRDPERNGDALALLQQALLNMDE 112 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 A++FTIHGFCQR L NAFESG+LF+ +L ED L QA D WR+ YP R +A++ Sbjct: 113 ASIFTIHGFCQRALQDNAFESGLLFDLRLQEDLGPLLQQAAEDTWRKLFYP-DRLLAELA 171 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 W P +L + YL + P D + L+ +K QWR +L Sbjct: 172 QAKWGEPADMLNGLRSYLAQGDLELIRPDVDPQALSHLA-------GALKAQWRQQGDDL 224 Query: 244 DALIESSGIDR------RKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE-- 295 A + + ++ + + I ++ W+ E LP + FSQ L+ Sbjct: 225 TAAVREAAENKILGRAEKTYREDKLNDAILSLTIWSRTEEQM-TLPPAAALFSQSVLDAS 283 Query: 296 ---DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 G P+H F A+DQ L + + ++ L ++ + R K + LGFD Sbjct: 284 VLKKAADKGLGAPQHAFFTALDQFLTQQTQLDAWLVGATLTAFKDVLQRLKTQAEILGFD 343 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLL 411 D++ L AL + +G L A++ R+PVA+IDEFQDTDP QYRIF ++ L + Sbjct: 344 DLIGSLKDALAAATGPQLRQALQRRYPVALIDEFQDTDPSQYRIFSSLYDAADGNATLFM 403 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 IGDPKQAIY+FRGADI+ Y++A+ YT+DTNWRS +V +VN LF Q + F+ Sbjct: 404 IGDPKQAIYSFRGADIYAYLQAKQRTPQDNRYTMDTNWRSRKELVAAVNGLFEQCANPFL 463 Query: 470 F-REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----CGVGDYQSTMAQVCAA 524 F +I FIPV++AG A ++ WL+ E + +AQ+ A+ Sbjct: 464 FAGDIEFIPVQAAGAADASVLTLDDVPVTPLQAWLLGREDGGKTISKDQARPQLAQITAS 523 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 +I +WL G+ G A L RP+ A DI+VLVR ++A + + L+ + + SV+L+ R Sbjct: 524 EIANWLNLGECGRARL----GERPLSAGDIAVLVRDNKQARIMSEKLSAVGVSSVFLT-R 578 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 +SV+++ EA ++L LL+A++ P E LR+AL T G A ++ETL DE W+ ++ Sbjct: 579 ESVYQSEEATDLLRLLRALLEPNDERRLRAALVTLSWGWTAAELETLARDEQRWENMLTS 638 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE 704 R+ W+ G MPM + + ++A LL GERRLT++L ++ELLQ+AG + Sbjct: 639 LHQLREEWQDAGFMPMFQKWLQNFSVAARLLGLPEGERRLTNLLQLAELLQQAGRDYPTP 698 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 L+ W + + D Q+RLESD+ LV+IVTIH SKGLEYPLV+LPF+ R + Sbjct: 699 ERLLAWYQGQLEQADGRGDEHQLRLESDEALVKIVTIHSSKGLEYPLVFLPFLGFGRSGK 758 Query: 765 QAF---YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 + + VLDL+ + AE ERLAEDLRLLYVALTR+ C + Sbjct: 759 DDYLMCHDPEREHRLVLDLSGGDRLREQAERERLAEDLRLLYVALTRAKQLCVWAWGAV- 817 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA-------------WQ 868 + +A+ LL G T ++ L D +A W Sbjct: 818 ---------NEFQYAAMAWLLYGGATGSLTDWLTSLKNLDDTQLAEPLTRLAAQTDFYWS 868 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA 928 A +Q Q + + + A++ QR NWR++SYS L G G + Sbjct: 869 PAPEPVHQRHQPGEGA-GQWRARSAQRTVEQNWRLSSYSQLAAGGGGRHSEEPLDEAEAT 927 Query: 929 AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQ 985 V ++ QFP+GA G H + E++ F L+ GF + Sbjct: 928 LEVQPRLQPDVSDIFQFPKGAWAGQCFHHILENMPFQAESAEILHELTSHSLQQHGFGEE 987 Query: 986 WEPVLTEWITAVLQAPLNETG---VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 W + E + V+ PL + G SLSQL N QVEMEF P++ + ++L + Sbjct: 988 WVACVAEQLWQVVNTPLRQNGVTPFSLSQLDKANMQVEMEFLFPVT-LIQQARLARFLAD 1046 Query: 1043 FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 + S L G++ GFIDL F+HEGR+Y+ DYK +WLGE +Y + + Sbjct: 1047 YSG-SEAPVNLNVAANEGLMHGFIDLTFQHEGRFYIADYKGSWLGEKRESYAPDNLRNEI 1105 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK-EHPQQGIYTTRPN 1161 AHRYDLQY +YTLALHRYL+ + YDYE HFGGV YLFLRG+ + P+ G++ RP+ Sbjct: 1106 LAHRYDLQYLIYTLALHRYLQRSLPAYDYETHFGGVYYLFLRGMHSQQQPELGVFFDRPS 1165 Query: 1162 AGLIALMDEMFAGM 1175 +A E+ G Sbjct: 1166 REAVAAFAEILQGE 1179 >UniRef50_B0BTM4 Exodeoxyribonuclease V, beta subunit n=6 Tax=Pasteurellaceae RepID=B0BTM4_ACTPJ Length = 1202 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 438/1231 (35%), Positives = 626/1231 (50%), Gaps = 93/1231 (7%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 +TL P+ LPL LIEASAGTGKTFT+A LYLRLLLG+G ++ LTVE++LVVTFT Sbjct: 2 KTLSPIELPLNCTALIEASAGTGKTFTMANLYLRLLLGVGCAS-----LTVEQILVVTFT 56 Query: 66 EAATAELRGRIRSNIHELRIACLRETTD-----NPLYERLLEEIDDKAQAAQWLLLAERQ 120 +AAT ELR RIR NI R + N + +L ++I+ +A L +AER+ Sbjct: 57 KAATEELRDRIRRNIKACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAERE 116 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 +D A++FTIH FCQ+ML AF+SGM F+ L DES L + + WR YP+ Sbjct: 117 IDLASIFTIHSFCQKMLFQFAFDSGMRFDNDLQPDESDLLRRLSEEVWREMFYPMGLTET 176 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET-LASRHAQIVARIDTVKQQWRDA 239 V E P I ++ E P + LA A + + K+ W Sbjct: 177 AAVAEYLGTPNNAFAAIRAFVSAELPSLSDEQHWLNGELAVYLAALQHFLADAKRHWSAH 236 Query: 240 VGELDALIES-----------SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 E+ LIES ++RR + KW + WA + SY E E+ Sbjct: 237 GEEISRLIESELAKKYKTGEKKALNRRSYQTRYLEKWRASVDEWAAS-SLSYLPEEQFER 295 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAE-----PLSIRDLVITRALAEIRETVAREK 343 F Q FL ++ + G E HP F Q+L + L++ + L +R +A K Sbjct: 296 FCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQQFANKQKPLLLYQFLLAVRTKLADYK 355 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 E F+DML+ L+ AL +E G LAA IR +FP AMIDEFQDTD +QY IF +I+ Sbjct: 356 ATHSEKSFNDMLTLLNQALNAERGAELAAQIRAQFPFAMIDEFQDTDKEQYEIFHKIFMQ 415 Query: 404 QPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLF 461 + T ++IGDPKQ+IY FRGADIFTY+ A + TL NWRS P +V++ N+LF Sbjct: 416 ETHTNHGFIMIGDPKQSIYKFRGADIFTYLTASQQAQQKRTLAKNWRSLPPIVSATNRLF 475 Query: 462 ----SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 + + F+++ I F V++ L + +L + Sbjct: 476 EFPEAAENSPFLYQGIQFHSVEAKASEAELIGAD------YVNCYLQAKFD------EKL 523 Query: 518 MAQVCAAQIRDWLQAGQRGEALLM---NGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 A+ CA QI+ L+ + GE L ++ +A DI++LVRS +A ++ AL L Sbjct: 524 AAKQCAYQIQQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAEL 583 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 I SV+LS ++SV+++ A+E+LW+L A + P + L SAL T++ GL+A +I L N Sbjct: 584 GIRSVFLSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS 643 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA-GGERRLTDILHISEL 693 E WD V F Y+QIW+++G++PML L I E L A +RRLTD+LH++EL Sbjct: 644 ELQWDEQVGRFITYQQIWQQQGILPMLHKLFMQEGIIERLRANPRDSDRRLTDLLHLTEL 703 Query: 694 LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 LQ A LE+E ALVRW + + + DS +RLES++ L++IVTIH SKGL+YP+VW Sbjct: 704 LQNAMPSLENESALVRWYERQLAKIDST-EEHILRLESEEELIKIVTIHGSKGLQYPIVW 762 Query: 754 LPFITNFRVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 LPFI +A Y D + + L + E LAEDLRLLYVA+TR+ Sbjct: 763 LPFIGKKNQGAKASNLAIYRDEQGLAHWYFGKPSEQVQALMDREELAEDLRLLYVAVTRA 822 Query: 810 VWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI---EALCDDDIA 866 +L + + +A+ LL GE + I E L I Sbjct: 823 ESQLNLIL----------PQRFEDGWNAVHYLLSNGEIGLDKSYKAEISTSEYLQQKGID 872 Query: 867 WQTAQTGD---NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR----------- 912 Q + + N W+ + L+A VTS+S L Q+ Sbjct: 873 CQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQHHTGY 932 Query: 913 ---------GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD 963 G Q + L+ D E + +QFP G LHS FE D Sbjct: 933 SMPKAFESAGQDYDQQQVLTLETDNLFALDNEETNAYSSYQFPHSTKVGNILHSFFEHSD 992 Query: 964 FTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 F Q VD + E G + W L +W VL P +ET +L + + E +F Sbjct: 993 FQQAVDFEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRLNEWQF 1052 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 YL + +L+ L++Q+ +SA P L Q+ G L+GF+D + + ++YL+DYKS Sbjct: 1053 YLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYLIDYKS 1112 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLF 1142 N+LG + Y++Q + + +RYDLQY LYTLALHRYLR R+ + Y+YE FGGV YLF Sbjct: 1113 NFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHRYLRVRLGEQYEYERDFGGVAYLF 1172 Query: 1143 LRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 LRG++ G++ +P LI MDE+F Sbjct: 1173 LRGMNGTQ-NSGVFFEKPCKQLIEGMDELFG 1202 >UniRef50_Q74CY7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74CY7_GEOSL Length = 1204 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 409/1216 (33%), Positives = 581/1216 (47%), Gaps = 58/1216 (4%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + D L + L G L+EASAGTGKTF IA LYLRL++ G L + +L Sbjct: 1 MTSL-RPHDNLTVELSGHNLVEASAGTGKTFAIACLYLRLVVEGEG-------LLPDNIL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLL--EEIDDKAQAAQWLLLAE 118 VVTFTEAAT ELR RIR + + R + +RL E A A + A Sbjct: 53 VVTFTEAATKELRARIRQRLRQARDRFAGGGAPDEFLDRLALGERWPGHATALARIDSAL 112 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 + D AA+ TIHGFC R L NAFESG LF+ +L D+ L Q DFWR H + Sbjct: 113 QTFDCAAISTIHGFCLRALQENAFESGSLFDTELAADQEPLLRQVADDFWRHHFFGADAP 172 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA-QIVARIDTVKQQWR 237 + + P+ L + P + P A R A +I + WR Sbjct: 173 LLPLALGRRWSPEELAAFLRNIAGK--PHLAVEPVWHSGEADRVAGEIRDAFAALSSLWR 230 Query: 238 DAVGELDALIES-SGIDRRK--FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 E+ A++ + G+ R + ++ + + +A + Y L +KF+ FL Sbjct: 231 TQRAEIAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAG-ADPYALFAGFDKFTTGFL 289 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDM 354 + + PRH F+ D+L L+ A RE +A K +R G+DD+ Sbjct: 290 AGQRLKKADPPRHDCFDLCDRLARLTSQRLLLLKAEFAARGRERLAALKAQRNVRGYDDL 349 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGD 414 L+ L +AL G LA +R R+ A+IDEFQDTD QYRIFR ++ L LIGD Sbjct: 350 LTDLHAALGGPGGAALADRLRERYRAALIDEFQDTDQVQYRIFRAVFSGGA-VPLFLIGD 408 Query: 415 PKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFS-QTDDAFMFR 471 PKQAIY+FRGAD+F Y++AR E+ A +T+D NWRS P MV +V+ LF + F+ Sbjct: 409 PKQAIYSFRGADVFAYLEARQEIPAERRFTMDRNWRSTPEMVEAVSSLFRLGGEHPFLAG 468 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-----EGESCGVGDYQSTMAQVCAAQI 526 +I F PV +A + F +++W + + +G + + A +I Sbjct: 469 DIAFPPVTAARRQGC---SFGDRDPAPLQLWFFRRGESDRDCINLGTGRQRIVTAVADEI 525 Query: 527 RDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 L G+ G A L + D +P+ D++V+VRS EA V+ AL IPSV + + D Sbjct: 526 SGLLADGRAGTACLEDEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRERGIPSV-VQSAD 584 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 S+FET EA E+ ++ AV P E +R+AL T++ GLN D+ L E AW+ + F Sbjct: 585 SLFETREAGEVWTVMGAVAEPGNEGRVRAALVTALFGLNGNDLALLMEQEAAWEARIAAF 644 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SE 704 YR +WR++G M M RAL+ + E L GERRLT++ H +E+L +A + Sbjct: 645 RDYRDLWREQGFMTMFRALLDREGVRERCLPLPDGERRLTNLRHCAEVLHQAAVERRLGP 704 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 AL W + + P Q+RLESD V+IVT+H SKGLEYP+V+ PF+ + Sbjct: 705 DALTAWFGERVSVPPPG-EDYQIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRDD 763 Query: 765 QAF-YHDRHSFEAVLDLNAAPESVDLAEA--ERLAEDLRLLYVALTRSVWHCSLGV---- 817 + V D A E LAE+LRLLYVALTR+ L Sbjct: 764 GDLTLCHEEGYRLVADFGTDRRDERQRRARTEALAENLRLLYVALTRARCRAYLVWGKFR 823 Query: 818 -----APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 AP G + + L L+K Q + IA Sbjct: 824 GAETSAPGWLLHGSRPDGGGDPVALLEGTLKKATDQTLLERLDHLATASGGGIAVTEDPC 883 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ---DLMPRLDVDAA 929 D P + A L + + WRV S++ A+ ++ Sbjct: 884 PDRLPRFRPAMGEAPLVCRDFRGDIDAGWRVASFTSFASGHREPAELPDRDQTPPELPPD 943 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQW 986 + P + FPRG G FLH LFE LDF D + VR +LE G +QW Sbjct: 944 AASDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLDFAVAGDDTVRDLVRRELERNGHGAQW 1003 Query: 987 EPVLTEWITAVLQAPLNETG--VSLSQLSARNKQVEMEFYLPI-----SEPLIASQLDTL 1039 ++ + VL PL G L+ L+ + E+EFY P+ ++ + Sbjct: 1004 LDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSWLAELEFYFPLRFVRDAQVATILAGAGV 1063 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + Q L A + F + RGM++GF+DLVFRH GRYYL+D+KSN LG + Y + + Sbjct: 1064 LPQGADLGAVARRIAFGEARGMVRGFVDLVFRHSGRYYLIDWKSNHLGNRAEDYGPERLC 1123 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTR 1159 M+ Y LQY LYT+AL+R+L R+ Y YE HFGGV YLFLRG+D E P G+Y Sbjct: 1124 REMERSLYPLQYLLYTVALNRFLERRLPGYRYEEHFGGVFYLFLRGIDPERPALGVYHDL 1183 Query: 1160 PNAGLIALMDEMFAGM 1175 P L+ + + AG Sbjct: 1184 PRPDLVRALTDCLAGR 1199 >UniRef50_A1TWK0 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Marinobacter RepID=A1TWK0_MARAV Length = 1241 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 484/1252 (38%), Positives = 661/1252 (52%), Gaps = 94/1252 (7%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG-SAAFPRPLTVEELL 60 ++ LDPL LPL G LIEASAGTGKTFTIA LY+RL+LG G + + L LL Sbjct: 6 TNRNPNLDPLTLPLNGSALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLL 65 Query: 61 VVTFTEAATAELRGRIRSNIHELRIAC------LRETTDNPLYERLLEE----IDDKAQA 110 VVTFTEAAT ELR RIR+ + + L T + L +L ++ + Sbjct: 66 VVTFTEAATKELRDRIRTRLTQAAEVFSEAADSLEPTPETALIHKLRDDSYPDPASWPEC 125 Query: 111 AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 + LLLA MDEAAV TIHGFC RML+ +AF+SG LF+ L D+S L D+WR Sbjct: 126 RKKLLLAAEWMDEAAVSTIHGFCNRMLSEHAFDSGSLFKLTLETDQSELLEDVARDYWRT 185 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 YPLP + WK P L + + + A + P + + ++ AR + Sbjct: 186 FVYPLPPALMDEALSHWKTPTDLRKAVRNLIDDPAALGTPPENVHQAINQVVSERQARAN 245 Query: 231 TVKQQ-WRDAVGELDALIESSGIDRRKF--NRSNQAKWIDKISAWAEEET---NSYQLPE 284 +K W E+ L+ +R +++ K D + AWAE + Sbjct: 246 ELKAHPWAQWQQEVTDLLNGLNKAKRLHGGSKNAMLKVWDSLLAWAESDELLPEKLDSAA 305 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEIRETVAR 341 + + L++ K PRHP F+AID LLA S + ++ A + + Sbjct: 306 GYKNQTPEGLDNILKGDEPAPRHPAFDAIDALLAFGQNLPSAKSDILRHASHWVAARLEA 365 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 EK++R E+GFDD+L+RLD AL G+ LAA IR +FPVA+IDEFQDTDP QYRIF RI+ Sbjct: 366 EKQQRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVALIDEFQDTDPVQYRIFNRIY 425 Query: 402 H---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSV 457 + +QP+T LL+IGDPKQAIY FRGADI TY++AR V A YTL TN+RSA MV+ V Sbjct: 426 NVEANQPDTCLLMIGDPKQAIYGFRGADIHTYLQARLGVQARTYTLGTNYRSADTMVSGV 485 Query: 458 NKLFSQTD-----DAFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG- 506 N++F +D AF+F +PF V + G + GE QP++ W E Sbjct: 486 NRVFEYSDQQSPKGAFLFGNGDSTPLPFQSVAANGTKRLW--AVNGEIQPSLVFWTHESG 543 Query: 507 --------ESCGVGDYQSTMAQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDIS 555 + G + +A+ CA++I L QAGQ G L N D PV SDI+ Sbjct: 544 EEDKEGNPKGLAKGTATADVAETCASEIARLLTLGQAGQAGFVLPDNPADLEPVEPSDIA 603 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 VLV +R EAA VRDAL I SVYLS+RDSV + EA E+L L+A P + +R+A Sbjct: 604 VLVNNRNEAAAVRDALGRRRIKSVYLSDRDSVLTSREANEVLCWLRAFAEPRQLAFIRAA 663 Query: 616 LATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 LAT +G + ++ L DE + +E F Y+Q W+ +GV+PMLR+ + + LL Sbjct: 664 LATPTLGQSWQALDRLLTDELILEREIERFQRYQQQWQSQGVLPMLRSFLMDFEVPGRLL 723 Query: 676 ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GERRLTDILHI+ELLQ+ QL+ EHALV +Q + D + +RLESD L Sbjct: 724 QRPDGERRLTDILHIAELLQQDSLQLDGEHALVHHFTQILRAADEEDEHRTLRLESDAGL 783 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVDLAE 791 V+++T+HKSKGLEYPLV+LPF T FR + YHD + + V + PE ++ A+ Sbjct: 784 VKVITVHKSKGLEYPLVFLPFGTAFRAENPKQAYVRYHD-DTGKLVTVFDPTPEDIERAD 842 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA 851 ERL ED+R LYVALTR+ + +G A + + +QS LG + G P+ Sbjct: 843 QERLGEDIRKLYVALTRARFATWVGAAAV----------DNWYQSGLGYAI-AGTPEQPI 891 Query: 852 GLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ 911 A +I N + A A R ++W + SYS ++ Sbjct: 892 SQALASLAQGRPEIRITPLPEAGNTIF-TETAPEALGPALISNREAKEDWWIASYSTIEY 950 Query: 912 RGH--------GIAQDLMPRLDVDAAGVASVVEEPTLTP----HQFPRGASPGTFLHSLF 959 G G +D + ++ + E P + H FP+GA PGTFLH L Sbjct: 951 TGMAGTGITFTGEVEDAQTQNLLEESAQDDTDEAPPVPAVRNHHHFPKGAGPGTFLHELL 1010 Query: 960 EDL---DFTQPVD-PNWVREKLELGGFES---QWEPVLTEWITAVLQAPL-----NETGV 1007 E F + VD P + E+L W L W+ +++ PL E Sbjct: 1011 EWCTAQGFQRVVDNPELLHEQLSRRCGTRGWGDWIEPLQHWLLELIRKPLRLDRNGEDTA 1070 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 SL+QL + E+EF+ S + LD L+ ++ A P E + GMLKGFID Sbjct: 1071 SLAQLESLR--PELEFWFE-SRNVSIHTLDKLVTRYTLNGADRPRAEANRFNGMLKGFID 1127 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 LVF H+G+YY+LDYKSN LGED +AYT QAM A+ RYDLQY LY LALHR L+ R+ Sbjct: 1128 LVFEHKGQYYVLDYKSNALGEDDAAYTDQAMGQAILDKRYDLQYILYLLALHRLLKARLP 1187 Query: 1128 DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 YDY+ H GG +YLFLRGV+ G +T +P LI +D +F G + Sbjct: 1188 GYDYDQHIGGAVYLFLRGVNS--ASGGAFTDKPPRMLIEQLDALFDGEPVSG 1237 >UniRef50_A4SEL9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEL9_PROVI Length = 1167 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 422/1200 (35%), Positives = 618/1200 (51%), Gaps = 72/1200 (6%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+ + L G L+EASAGTGKT+ + LYLRL++ + L E +LVVT+T Sbjct: 2 QPLNTSSIALSGINLVEASAGTGKTYALTELYLRLII--------EKELLPESILVVTYT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQMDE 123 EAAT ELR +IR I + L L + + L A +D Sbjct: 54 EAATKELRQKIRERIRDTTAMLASPLECTKRLASLGSLAMEKGAGEVSSLLENALYLLDT 113 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 A+VFTIHGFC R L NAFESG L++ ++ DE L DFWR + + Sbjct: 114 ASVFTIHGFCLRALQDNAFESGSLYDTEIAADERELAGSIVDDFWRSRYFSSTAVLPGYA 173 Query: 184 FETWKGPQALLRDIN--RYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 + + P++ LR + R GE + + D + + ++I + WRD Sbjct: 174 MK--ESPESFLRFLGEVRASSGERIIPQFSSSDIVAIEDECQSLYSQIAEM---WRDEGE 228 Query: 242 ELDALI-ESSGIDRR--KFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 ++ +I E G+ R K+ + + + A+ E E + L E + KFS + + T Sbjct: 229 KVKKMISEDRGLSRAAGKYREDDLVELFRGMDAFVE-EALPFSLFEGIVKFSASRMAEWT 287 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358 K PRH LFE D + + R+ + + K+ FDD+L + Sbjct: 288 KKKFTPPRHKLFELCDCYHRAIRQRFLALKAELILYCRDRLPKRKKEANIRFFDDLLHDM 347 Query: 359 DSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ 417 +AL + E GE +R R+P A+IDEFQDTD +QY IFR I+ + + L LIGDPKQ Sbjct: 348 HTALFNHEEGEAFRLLLRRRWPTALIDEFQDTDARQYDIFRSIY-EKADGPLFLIGDPKQ 406 Query: 418 AIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 AIY+FRGAD+F Y+KA V +TL NWRS P ++++ N LFS D F+F EI + Sbjct: 407 AIYSFRGADVFAYLKASRNVEEGRRFTLTHNWRSVPQLLDAFNVLFSNVPDPFLFGEISY 466 Query: 476 IPVKSAGKNQALRFVF-KGETQPAMKMWLMEGESCGVGDYQSTMA-----QVCAAQIRDW 529 + S + RFV K + + ++ +++ + A + A +I Sbjct: 467 RSLVSGTPEREDRFVVQKDDGRVPLEFLVLDASMKENALFSVDEATGFASEAVAGEIFKL 526 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 L++ + GE L+ RP+RA DI+V+VRS ++AA+VRDALTL IPSV S+R SVF Sbjct: 527 LRSARNGETLI----GGRPLRADDIAVIVRSHRQAARVRDALTLFAIPSVVRSDR-SVFA 581 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR 649 + EA+E+ LL A++ P E +R+AL T ++G + DI + +DE W + F Sbjct: 582 SNEAREIAILLAALVDPSDEGKIRAALITDILGRSGNDIGAMMDDESLWVPQLHFFARLH 641 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALV 708 +W +RG M M L+ ++ LL+ A GERRLT++LH ELL + + AL Sbjct: 642 SLWIERGFMTMATVLLREEDVRRRLLSLAEGERRLTNLLHCIELLHQKEHEEGVGPEALA 701 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV--QEQA 766 W +Q+++E Q+RLE+D+ V+I+TIH SKGL++P+V+ PF+ N ++ A Sbjct: 702 SWFTQNMVEGGQRDEEYQLRLETDEPAVKIMTIHVSKGLQFPVVYCPFLWNGSPAARDVA 761 Query: 767 FYHDRHSFEAVLDLNAAP--ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 +HD +AVLD + + L+ E+LAED+RLLYVALTR+V+ CS+ VAP+ + Sbjct: 762 AFHDE-GDKAVLDFGSEDFEHHLVLSHEEQLAEDIRLLYVALTRAVYSCSVVVAPIRKT- 819 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT-----AQTGDNQPWQ 879 Q+AL LLQ G + + A D + +T A + Sbjct: 820 ----------QTALNHLLQSGTRETLHEQLNHLIARGDGAVGMRTIDQPGASVQPAALHE 869 Query: 880 VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPT 939 E K +WR+ S+S + A +P D V + P Sbjct: 870 AFRRENGEAVRKVFTGRIDRSWRIASFSFFTRGS--YAHPELPDRDEMQRNVPDGAKHPG 927 Query: 940 LTPHQFPRGASPGTFLHSLFEDLDFTQPVD---PNWVREKLELGGFESQWEPVLTEWITA 996 + FP GA G F+HS+FE LDF++P D ++ LE G+ QW PV++ + Sbjct: 928 PSIVTFPGGAQAGIFMHSIFETLDFSRPFDDSTEEGIKNALERSGYHQQWLPVISSMVRT 987 Query: 997 VLQAPLN---ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 VL L + +LS L EMEF+ P+ L L +L R + L Sbjct: 988 VLSVSLGMEDGSSFTLSDLKPGEWVTEMEFFFPL-RFLTPDHLSSLARTALHPA----QL 1042 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 +F VRGML G+ID+VF+ GRY+LLD+KSN LGE +YT++ M A M H YDLQY L Sbjct: 1043 DFAPVRGMLIGYIDMVFQAGGRYWLLDWKSNHLGESLDSYTKERMEAVMGFHHYDLQYLL 1102 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ-GIYTTRPNAGLIALMDEMF 1172 YT+ALHRYL RI DY Y+ HFGGVIY+FLRGVD+ + G Y RP+ L+ + E+ Sbjct: 1103 YTVALHRYLSVRIPDYRYQTHFGGVIYVFLRGVDESSGESRGFYRARPSEELVNSLTEIL 1162 >UniRef50_Q0I3D6 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Histophilus somni RepID=Q0I3D6_HAES1 Length = 1216 Score = 942 bits (2436), Expect = 0.0, Method: Composition-based stats. Identities = 399/1230 (32%), Positives = 642/1230 (52%), Gaps = 93/1230 (7%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V + +P+ PL LIEASAGTGKT +I +LY+RLLL G F + L V+++LVVT Sbjct: 19 VFQPFNPISTPLSAVSLIEASAGTGKTHSIVSLYIRLLLQ-AGENNFSQALEVDQILVVT 77 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETT-------DNPLYERLLEEIDDKAQAAQWLLL 116 +TE AT EL+ RIR I++ + A ++ ++ + LL I D A L L Sbjct: 78 YTEMATQELKQRIRERIYQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTL 137 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 AER +D +AV TIH FC+R+L AF SG+ F +L+ DES L + + WR + Y P Sbjct: 138 AERNLDISAVSTIHSFCRRVLMQYAFNSGVHFNMELVSDESELIQRLANELWRENFYHQP 197 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR--HAQI---VARIDT 231 +A +F+ P+ L+ + +YL V P E + H Q+ +++I Sbjct: 198 LSVANFIFKKLGSPKQLVSYVYKYLSQPPKVNTQKPHLLEISLQQFLHTQVEPQLSKIHQ 257 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 KQ+W + L L+ +K+ + +K+ WAE E Q PE+ + F Q Sbjct: 258 FKQRWLENEKALRELVA-----LKKWRKDWFESRFNKMRVWAENE--DIQQPEAAKYFYQ 310 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 L+ + L + + + + +++ + E+ + K + GF Sbjct: 311 LELDKKEPLVSHDLFSELENLVTNEVTQISNNFSVLLYHCVHELNRKIMDYKLTHQQKGF 370 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ--PETAL 409 DD+L + +AL G+ LA IR ++P AMIDEFQDTD QQY IF +I+ T Sbjct: 371 DDLLRLVRNALYQPQGDKLAQLIRHQYPFAMIDEFQDTDQQQYDIFYQIYIKSAVKNTGF 430 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS-QTDDAF 468 ++IGDPKQ+IY FRGADIFTY+KA + ++L NWRS ++ ++N LF Q + F Sbjct: 431 IMIGDPKQSIYKFRGADIFTYLKATEQAQYRFSLGENWRSTQPLIQTINYLFDFQENSPF 490 Query: 469 MFREIPFIPV------KSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC 522 + ++IPF V + G RF G +PA++ +L + + +A+ C Sbjct: 491 LHKKIPFQQVAKGLYYDTQGNLLPNRFCLNGRIEPALRGYLTDNND-------TQLAENC 543 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A I WLQ+ + +A+L N P++A +I+VLV S +A +++ AL I SVYLS Sbjct: 544 ALSIEQWLQSAVQNQAILDNK----PLKAKNIAVLVSSFTQAEKIQKALRDKGIASVYLS 599 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 +R +VF+++ A+E+L +L+A + P EN + +AL+T++ +I + DE+ W+ V Sbjct: 600 DRSNVFDSITAKELLHILRACLNPLNENNILNALSTALFAKTGAEIFQIKQDENLWENCV 659 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE 702 E F Y+Q W+++G++PML L + I ENL GER++TD+ H+SELLQ+A + Sbjct: 660 ERFIAYQQQWQRQGILPMLHHLFAVEKINENLQMMEQGERKMTDLWHLSELLQQATRLND 719 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN--- 759 +E +LVRW + I +Q+RLESD+ LV+IVT+HKSKGL Y LVW+PFI Sbjct: 720 TESSLVRWFEKQIQ--GEERLEEQIRLESDRELVKIVTLHKSKGLAYDLVWIPFICKPSL 777 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 FR Y+D + + + D++ + D E ER+AED+RLLYVALTR+ + + + Sbjct: 778 FRDNAINTYYDENQEQVLWDMDK--QHSDEIEKERMAEDIRLLYVALTRAKYQIVINLPR 835 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQ 879 + KK + ++ G++ D + + + +++ Q + +++ Sbjct: 836 VFE----KKWNALLYVLTKGQIGVNKRIDDEYDAKKLLSPII-EELGEQCVEIEEDKKLL 890 Query: 880 VN-------DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVA 932 V + + + A+ NW VTS++ + R H + L R ++ Sbjct: 891 VRRNEYITVQQALSPVEAEEFHGKIERNWTVTSFTEMTYR-HQRNRSLNSRQKAQQIEIS 949 Query: 933 SVVEEP----------------------------TLTPHQFPRGASPGTFLHSLFEDLDF 964 V ++ +P FP G G+ H FE + Sbjct: 950 GVFDQARDYDVKENGHDMSASFDMKLSADSDYPVGFSPFDFPHGVHVGSEFHRYFEKYNM 1009 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL--NETGVSLSQLSARNKQVEME 1022 TQ ++ + + + + +W+ L +WI + PL + G +L + +++ EM+ Sbjct: 1010 TQALNDDQLSKLCQTLQLSDEWQNPLKKWINTIFNTPLKQDIAGFTLGNIKSQDCLKEMQ 1069 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 FYL +++ + + L+ ++ L P+ +++GM++GFIDLV R EG+YYLLDYK Sbjct: 1070 FYLKLNQSFNENVFNRLLSKYHHLP--SSPILMDRIKGMVRGFIDLVVRFEGKYYLLDYK 1127 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 SN LG S Y Q + M + YD QY +YT+ALHRYL+ R +YDY+ FGGV+Y F Sbjct: 1128 SNLLGYSSQHYQQDNLIQVMCNNHYDWQYLIYTIALHRYLKERDKNYDYQRDFGGVLYTF 1187 Query: 1143 LRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 LRG++ GI+ +P+ LI+ ++ +F Sbjct: 1188 LRGMNG-KDNSGIFFDKPDWRLISELESLF 1216 >UniRef50_C5SAK7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAK7_CHRVI Length = 1284 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 468/1300 (36%), Positives = 658/1300 (50%), Gaps = 141/1300 (10%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L+PL +PL G RLIEASAGTGKTFT+A LYLRL+LG GG AF R L E+L Sbjct: 1 MNTTIQRLNPLEVPLHGSRLIEASAGTGKTFTLAMLYLRLVLGHGGETAFARQLMPPEIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEID--DKAQAAQWLL 115 VVTFT AAT ELR RIR + E + +++ +PL L +++ D A +A+ L Sbjct: 61 VVTFTNAATEELRDRIRRRLVEASLVFRNQSSPGSSDPLLLDLRDQMAGGDLAHSARRLE 120 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 LA MDEAA+ TIH +C RML +AF+S FEQ L D++ A D+WR L Sbjct: 121 LAAEWMDEAAISTIHAWCYRMLREHAFDSANAFEQTLENDDAERLQHAAEDYWRTFLLGL 180 Query: 176 PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 P E + + E W P L + + L + P DE + I T+K Sbjct: 181 PAERLEPILEQWSQPSDLAKAVRGLLSLAEYLPPIADPPDEIVGRCLETRRHTIATLKTD 240 Query: 236 WR--DAVGELDALIE----SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP---ESL 286 WR D + L+ L E + + N++++AK +D + W E + +S Sbjct: 241 WRTQDHIAALERLFEQAVKNKAFKQPSLNKTHRAKVLDGLRVWLETPDQTEPDIFGGQSW 300 Query: 287 EKFSQRFLEDRTKAGGETP-RHPLFEAIDQLLAEPLSIRDL---VITRALAEIRETVARE 342 ++ S + + + P P A+ L ++ D ++T A+ ++ V RE Sbjct: 301 QRMSSLAIAEIWNDPAKAPVDDPACRALADLHETLTTLPDPTEDLLTHAVHWLKSHVERE 360 Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 KR+ L +D+L RLD AL+ E E LAAAIR +FPVA++DEFQDTDP QYRIF I+ Sbjct: 361 KRQSAILTQNDLLIRLDQALQGEVRERLAAAIRRQFPVALVDEFQDTDPLQYRIFSSIYE 420 Query: 403 ---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVN 458 + T +IGDPKQAIYAFRGADI TY+ AR+ HYTLD N+RS+ G++ +VN Sbjct: 421 IQANHAATGFFMIGDPKQAIYAFRGADIHTYLIARAATQGRHYTLDVNYRSSTGLITAVN 480 Query: 459 KLFSQTD-----DAFMFRE-------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 LF + AF+FRE +PF P + + + G P ++ W++ Sbjct: 481 ALFEHGERTATHGAFLFREPDGQGNPVPFHPARPRDQAERT-LTIDGRPCPPLQGWVIPP 539 Query: 507 ESCGV---GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG-DDARPVRASDISVLVRSRQ 562 G Y++ A+ A I + L+ GQ G ALL G D RP+ SD++VLV +R Sbjct: 540 GPSGKLNKDAYRARTAEAAARAIAELLRLGQAGRALLPVGQDGERPLEPSDLAVLVNNRN 599 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 EA +R L L++ SVYLS R +VF+T A+++ LL+A+ P + +R ALAT ++G Sbjct: 600 EADAIRTELRRLDVASVYLSERGNVFDTQIARDLAVLLRAIADPFDDRLMRQALATRLLG 659 Query: 623 LNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 D++ LN DE W+ E WR++G +PML L+ IA LL T GER Sbjct: 660 QGLTDLDRLNRDELHWETQGERLRDLNGRWRRQGFLPMLYRLIGEFRIAARLLGTTDGER 719 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN----ASSQQMRLESDKHLVQI 738 +TD+LH+ ELLQ A +L+ E ALVR+L + I + D+ A ++Q+RLESD LV++ Sbjct: 720 AMTDLLHLGELLQRASEELDGEQALVRFLEEAIADSDAATGETAEARQLRLESDARLVRV 779 Query: 739 VTIHKSKGLEYPLVWLPFITNFRV---QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL 795 VTIHKSKGLEYPLV+LPFI + R +++ + + L V A+ ERL Sbjct: 780 VTIHKSKGLEYPLVFLPFIADCRRTQSKDRPLKTHDAAHRLQVHLGGDDALVAQADRERL 839 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ---------KGE 846 EDLR LYV LTR+ LG+ + +D+ SALG LL + Sbjct: 840 GEDLRKLYVGLTRARHANWLGLGAI----------SDLEHSALGYLLGLDGQTVEWSGDD 889 Query: 847 PQDAAGLRTCIEALCDDDIAWQT----------AQTGDNQPWQVNDVSTAELNAKTLQRL 896 + G + + + D++ + D P+Q E A+ Sbjct: 890 QPETEGSGSEAQGTSNGDLSARLRRLSCVTLIDPPAADPAPYQAEAEVELE-GARPAPDW 948 Query: 897 PGDNWRVTSYSGLQQRGH---------------GIAQDLMPRLDVDAAGVASVVEEPTLT 941 W ++SYS L + H ++ + P V+ A +V EE T Sbjct: 949 RPRAWWISSYSALSRGAHLADSEDLAAGVWAASETSRPVSPADAVETADDETVREELAET 1008 Query: 942 P----------------HQFPRGASPGTFLHSLFEDLDFTQPVDPN-------------- 971 H FPRG GTFLH L E + Sbjct: 1009 RTPETEMQTRSLGTGRLHDFPRGGRYGTFLHGLLEWAANLRAPTRPTGPARPGFAAALEA 1068 Query: 972 ------WVREKLELGGFESQWEPVLTEWITAVLQ--------APLNE--TGVSLSQLSAR 1015 + ++ S W L W+ +L AP + + L+ L R Sbjct: 1069 AQARRRMLTQRCASRRL-SDWVEPLDAWLIELLDRTWHLDALAPPDGAVPQLRLADLDPR 1127 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 QVE+EF++ S + LD +I + P L + GMLKGFIDLVF H+GR Sbjct: 1128 RYQVELEFWIEASRVDLC-ALDRVIIRHTLDGRERPELAGSYLNGMLKGFIDLVFEHQGR 1186 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 YYLLD+KSNWLG D SAY+ +AM AA+ RYDLQY LY LALHR L+ R+ DYDY+ H Sbjct: 1187 YYLLDWKSNWLGPDDSAYSPEAMRAAIAERRYDLQYVLYLLALHRQLKARLPDYDYDRHL 1246 Query: 1136 GGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 GG IY+FLRG + QG++ RP+ LI +D +FAG Sbjct: 1247 GGAIYVFLRG--GQAASQGLFMDRPDRALIETLDRLFAGD 1284 >UniRef50_Q60AZ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Methylococcus capsulatus RepID=Q60AZ5_METCA Length = 1200 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 426/1221 (34%), Positives = 596/1221 (48%), Gaps = 70/1221 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS V LD R PL G LIEASAGTGKT+ I LYLRLLL + V+ +L Sbjct: 1 MSAV-RPLDVFRCPLAGVNLIEASAGTGKTWNICGLYLRLLL--------EQEREVQNIL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEID---DKAQAAQWLLL 116 VVTFT AATAELR RIRS I E + +P L+ ++ D+A Q L Sbjct: 52 VVTFTNAATAELRERIRSRIVETLVYLRGGGGAADPFVTGLVAALEGGFDRALLRQRLER 111 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP-- 174 A DEAA+FTIHGFCQR L F +G+ F +L++D+++L + DFWRR Sbjct: 112 ALLAFDEAAIFTIHGFCQRALAGTPFAAGLPFALELVQDDAMLAQEVANDFWRRRVAAGG 171 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 L R + + E P+ + L + P P + ++A ++ Sbjct: 172 LSRAMIAHLLEAGDDPEKYASLLGHALAKSLSDWRWPEPVEPPDERDEQALLAAFGEARR 231 Query: 235 QWRDAVGELDALIESS--GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 W+ + L+E + ++ + ++ AW + + ++ F Sbjct: 232 LWQADAFGIVRLLEEAIDQLNGVSYKAASLETARKGWDAWFATNDPLAPVEDKVQLFRAA 291 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLA-------EPLSIRDLVITRALAEIRETVAREKRR 345 L+ TK G TP HP F+A + LLA R ++ + E + EKRR Sbjct: 292 MLKGGTKKGNTTPYHPFFDAAENLLALKDGIQGRLAVARLGLLRELVEHGAEALRAEKRR 351 Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP 405 R +GFDDML + AL S LA A+R+R+PVA+IDEFQDTDP Q+ IFR ++ + Sbjct: 352 RRVIGFDDMLWNVHEALTSGCYPWLAPALRSRYPVALIDEFQDTDPLQFAIFRALYLAEG 411 Query: 406 --ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 + +GDPKQAIY FR AD++TY+ AR + YTL N RS ++++ N LF Sbjct: 412 AVSGPVFFVGDPKQAIYGFRNADLYTYLGARHQADREYTLVENQRSVTEVIDACNALFGA 471 Query: 464 TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC- 522 AF+ + + PV+ K + + F E + ++WL+ + G ++ + C Sbjct: 472 NPRAFLLEGLEYRPVRPGAKPRPV-FTDVTEPRSPFQVWLLPRDEAGGWLPRTEAVRRCT 530 Query: 523 ---AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 AA+I +Q G G L R +RASDI+VLVR + +R AL L + SV Sbjct: 531 DTTAAEIARLIQEGMAGRIRL----GERALRASDIAVLVRRHAQGRLIRQALARLGVGSV 586 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 LS SVF TLEA+E+ +L AV+ P R+ LR+ALAT +MG +AL I ++ DE Sbjct: 587 ELSQA-SVFHTLEAEEIERILLAVLEPGRDRLLRAALATEIMGCDALTIAGISADEDRLL 645 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 ++ F YR++W+ RG PM R L+ +A +LA GERRLT++LH+ ELL +A Sbjct: 646 EIMLRFGEYRELWQLRGFGPMYRRLLHDEGVARRVLAQPDGERRLTNLLHLGELLHQAQA 705 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 L S AL+RWL Q + Q+RLESD++LVQIVTIHKSKGLEYP+V+ P++ Sbjct: 706 GLTSPDALLRWL-QSRRRDSAAQEDAQLRLESDQNLVQIVTIHKSKGLEYPVVFCPYLWE 764 Query: 760 FRV-----QEQAFYHDRHS---FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 QE YHD + + P E AE LRL+YVALTR+V Sbjct: 765 GNRGARGKQEGIEYHDESGVPVLDFRPEAKNDPGIKWQRRQEEDAETLRLIYVALTRAVQ 824 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLL--QKGEPQDAAGLRTCIEALC-------- 861 C L +R + +S L L + P+ +T ++ Sbjct: 825 RCYLFAGVYRTKREASASCGESTRSMLNWLACGKDHSPEQWQDAKTRLDPAHIEAGWRAL 884 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ----RGHGIA 917 D I L A+T W S++ L + G G Sbjct: 885 PDAIGVAPMPAIVVPAMAGPSSGLERLAAQTPPAWIPPGWSTGSFTSLVRAMEAGGEGRD 944 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREK 976 D + A++ E L +FPRGA+ GT +H LFE DFT P + + Sbjct: 945 HDALSLAPALGPPPAALPENDIL---RFPRGAAAGTCIHHLFEQADFTDPAGWDDAIGRA 1001 Query: 977 LELG--GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 L L G E+ +L + VL L + G+ LS++ + E+ F LP +E L Sbjct: 1002 LALRPQGSETAAPAMLKSLLADVLATDLGD-GLRLSEIGRGQRLSELAFRLP-AEGLDPV 1059 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYT 1094 +L+ L+R L+F + G L+G IDLVFRH RYYLLD+KSN LG Y Sbjct: 1060 RLNALLRDH---GYAMGKLDFRLLSGYLQGAIDLVFRHRSRYYLLDWKSNHLGYTREDYG 1116 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQG 1154 A+A M A Y LQY LYT+AL RYL R+ Y Y HFGGV YLF+RGV G Sbjct: 1117 PPALAETMAAEGYHLQYLLYTVALDRYLARRLPGYAYTSHFGGVYYLFVRGVRPAWRGAG 1176 Query: 1155 IYTTRPNAGLIALMDEMFAGM 1175 +Y RP IA +D + G Sbjct: 1177 VYFQRPAEDCIAALDALIGGR 1197 >UniRef50_B5JRL3 Exodeoxyribonuclease V, beta subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL3_9GAMM Length = 1215 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 446/1224 (36%), Positives = 655/1224 (53%), Gaps = 81/1224 (6%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGS----AAFPRPLTVEELLVVTFTE 66 + PL G RLIEASAGTGKTFT+A LYLRL+LG G S + L +++LV+TFTE Sbjct: 1 MTFPLHGRRLIEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTE 60 Query: 67 AATAELRGRIRSNIHELRIACLRETTD--NPLYERLLEEIDDKA--QAAQWLLLAERQMD 122 AAT ELR RIR + E A D +PL LL + D+ + A L A + MD Sbjct: 61 AATQELRERIRERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQHSRCAHLLNAAAQDMD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA+ TIHGFCQRML +AF+S LF L EDE L + D+WR PL + + Sbjct: 121 EAAITTIHGFCQRMLREHAFDSRSLFNLSLQEDEKTLTDDSFLDYWRSFALPLEGDAFKE 180 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDD------ETLASRHAQIVA-RIDTVKQQ 235 + P AL L+ + DD ++ RH ++ K Sbjct: 181 FELNYSTPSALQAAAKNPLKWVELLPPPIDSDDYTAHLAKSYKKRHQALMKWHQRWHKNH 240 Query: 236 WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 W +A+ E ++S ++ +K+ +W ++ W + + +L + S L Sbjct: 241 WMEALREHFPEWKTS-LNGQKYQEKTVNQWFAELERWLADPEHPLKLEKGWTNLSPEGLA 299 Query: 296 DRTKAGGETPRHPLFE---AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 + TK G P H LFE A++ L A D + A + E +A K+RR +GFD Sbjct: 300 ENTKKNGTPPEHELFESIPALEALFATLDENADTIALHAAHWVAERIATHKQRRSLIGFD 359 Query: 353 DMLSRLDSALRSE--SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--QPETA 408 DM+S+L AL + S LA IR ++P+A++DEFQDTDP+Q+RIF+R++ + A Sbjct: 360 DMISQLAEALDTPDASDTALAQRIRQQYPIALVDEFQDTDPKQWRIFQRLYPEIETRQNA 419 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFSQT-- 464 L++IGDPKQAIY FRGADI+TY+ AR + YTL N+RS+ MV +VN +F+Q Sbjct: 420 LVMIGDPKQAIYQFRGADIYTYLDARRSIDDTRRYTLPCNYRSSEPMVAAVNHVFNQGNQ 479 Query: 465 --DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE-SCGVGDYQSTMAQV 521 AFM +IPF V++ G+ + RFV + A+ +W + + + G Y A Sbjct: 480 HKSGAFMEADIPFEAVQANGRKE--RFVVMEKEHCALTLWYRDSDVAVGKNQYLQQSAAD 537 Query: 522 CAAQIRDWLQAGQRGEA-LLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A++I L + A + + SDI++LVRS EA +RDAL ++ S Y Sbjct: 538 TASEIVRLLNLARDRRAGFINEAGQFTALAPSDIAILVRSGSEAQVMRDALAERQLRSAY 597 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 LSN++SVF++ EA+++L L+A P + +R+AL T + L D++ LN+DE +W+ Sbjct: 598 LSNKESVFDSPEARDVLHWLRACHEPRNDRHMRAALGTITLDLPWADLDALNHDEASWNR 657 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700 E+F Y Q+W++ GV+ ++ L+ ++A A ER L++IL ++ELLQ A Q Sbjct: 658 RYEQFAEYHQLWQRSGVLAVIYHLVWDFHLA----ARQNAERSLSNILQLAELLQSASGQ 713 Query: 701 LESEHALVRWLSQHI-LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 ++ E L+RWL +HI E D+++ Q +RLESD L++IVT+HKSKGLEYPLV++PF Sbjct: 714 VDGEAGLLRWLEEHITEERDASSDEQVLRLESDDELIKIVTLHKSKGLEYPLVFMPFCAT 773 Query: 760 FRV-QEQAFYHDRHSFEAVLDLNAAPE--------SVDLAEAERLAEDLRLLYVALTRSV 810 FR + F H+ E L L + E +++ + ERLAEDLRLLYV +TR Sbjct: 774 FRPANAKDFPQAYHNGEGQLQLALSAEEIVSDSTTALEQCDRERLAEDLRLLYVGMTRPR 833 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ-KGEPQDAAGLRTCI----EALCDDDI 865 LG+AP R K + + QS G LL + D + I +AL + Sbjct: 834 HALWLGLAPTTLGRAHK---SKIGQSVWGHLLNLPADDIDKKTFQEVIKAPFQALAEGAP 890 Query: 866 AWQ-TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLM--- 921 + Q + +++P+ + +T + QR W + SYS L + IA+ Sbjct: 891 SVQFSTPELNSEPYLGHLDATPLGQPRECQRAQPPRWWMASYSALLRGADPIAETASGFD 950 Query: 922 PRLDVDAAGVASVVEEPTLT-PHQFPRGASPGTFLHSLFEDLD---FTQPVDP-----NW 972 RL + + E P+ H FPRGA PG FLH E + F + + Sbjct: 951 ERLADEGERRKASTELPSPEGLHPFPRGAMPGDFLHRQLELMGEAHFERAEQRLAEFKSE 1010 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNETG---VSLSQLSARNKQVEMEFYLPISE 1029 + KL+L +E W+ L + + ++Q L V+L+ L EMEF+ + Sbjct: 1011 LLPKLQLRQWE-HWQDRLPQALLGIVQQALPLPDNQRVALADLKPAQYHTEMEFHF-AAH 1068 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 ++ +D LI L+ + G+LKGFIDLVF HEGRYY+LDYKSN+LG D Sbjct: 1069 GCRSTDIDRLI------GHDPSGLKPQSLNGLLKGFIDLVFEHEGRYYVLDYKSNYLGPD 1122 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 SAYTQ AMA +++ HRYDLQY LY+LALHR L+ R+ +YDY+ HFGG IY FLRG E Sbjct: 1123 DSAYTQDAMAESVREHRYDLQYALYSLALHRLLKQRLPNYDYDKHFGGAIYYFLRGYQSE 1182 Query: 1150 HPQQGIYTTRPNAGLIALMDEMFA 1173 +G+++ R + +D +F+ Sbjct: 1183 --SRGVFSVRLELNTLDALDALFS 1204 >UniRef50_Q2LTC8 Exodeoxyribonuclease V beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTC8_SYNAS Length = 1230 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 411/1243 (33%), Positives = 608/1243 (48%), Gaps = 91/1243 (7%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + D L PLQG LIEA+AGTGKT+ I+ L+LRL++ L V E+LV+T+T Sbjct: 2 KPFDLLNAPLQGRNLIEANAGTGKTYAISGLFLRLIVEHA--------LQVGEILVMTYT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERL---LEEIDDKAQAAQWLLLAERQMD 122 AAT EL+ RIR + A ++ + L E D A + L A R D Sbjct: 54 VAATEELKDRIRCTLSRALEALGHGRVEDLFLDSFVRRLAEDDRTNSARRRLATALRDFD 113 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA+FTIHGFCQR L NAFES F +LI + + DFWRRH Y E+ Sbjct: 114 EAAIFTIHGFCQRTLQENAFESHSTFNAELITESEKITDLILQDFWRRHFYEAQPELVAY 173 Query: 183 VFET---WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 ET G ++ LR I+ + V++ P P+ + + A I ++ W++ Sbjct: 174 ALETKNNLAGYRSFLRQISSH-PDIRIVLEPPAPNHDIVEEEIAAYRREISKLRDSWKEC 232 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 + +L+ ++ + + +++D++ + E + LP++ EKF+ L + Sbjct: 233 RETVCSLLRDGSLNGKVYGEYQTDRYVDELDVFLERGGPCFPLPKNFEKFTAGKLSRSCR 292 Query: 300 AGGETPRHPLFEA---IDQLLAEPLSIRDLVITRALAEIRETVARE----KRRRGELGFD 352 G P+H FE I+ L + D ++ E+ +T+ E K RR L FD Sbjct: 293 KGCVPPKHHFFEICQVINDLEKRLKVVLDSILLSLKKELLQTIHAELPAFKTRRNILFFD 352 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-----HHQPET 407 D+L RL AL G++LAAAIR ++ A+IDEFQDTDP QY I + + + Sbjct: 353 DLLLRLRDALGRPEGDLLAAAIRRKYRAALIDEFQDTDPVQYAILQAAFLCNRPEESDKP 412 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 + LIGDPKQAIY+FRGADIF YM A +V A YTL NWRSAP ++N+VN +F + Sbjct: 413 PIFLIGDPKQAIYSFRGADIFAYMAAAKQVDAAYTLQENWRSAPALLNAVNSVFHSHPNP 472 Query: 468 FMFREIPFIPVKSA--GKNQALRFVFKGETQPA-MKMWLMEG-------ESCGVGDYQST 517 F++ I F+ K A G+ + L E PA +++W++ + G G Sbjct: 473 FVYEAISFMDSKPAPGGQKEQLILAGPDEWDPAPLQLWVIPDHQKGGKVKPLGKGHATPG 532 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 + Q A+I L AG++G AL+ N R + A D++VLVRS +EA ++ AL IP Sbjct: 533 ILQAVTAEISHLLDAGRKGMALIGN----RRIEAGDVAVLVRSNREARLIQQALLEGSIP 588 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637 +V +RD++F++LEA +M LL+A+ P E L +A+ TS++GL+ + L DE Sbjct: 589 AVM-HSRDNLFDSLEATDMDLLLRAIEVPNDERRLGAAMMTSLLGLSIGALYRLKIDERQ 647 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697 W+ ++ F Y + W++ G M M+R+L+ +I LL+ GERRLT++LH++E+L Sbjct: 648 WENCLQRFRNYHRQWQEAGFMRMMRSLLRIEDIRSRLLSQPDGERRLTNVLHLAEVLHRE 707 Query: 698 G-TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 + L+RWL++ + Q+RLESD V+IVTIHKSKGLEYP+V+ PF Sbjct: 708 SLERNRGMRGLIRWLAEQRDPGKMRSDEHQLRLESDARAVRIVTIHKSKGLEYPVVFCPF 767 Query: 757 IT----NFRVQEQAFYHDRHSFEAVL-DLNAAPESVD--LAEAERLAEDLRLLYVALTRS 809 + + + H +L DL +++ A E LAE +RLLYVALTR+ Sbjct: 768 VWEGAKDVSKNDALTCHGGDENSFLLCDLGLPHQALHELRAYREGLAERVRLLYVALTRA 827 Query: 810 VWHCSLGV-----------APLVRRRGDKKGDTDVHQSALGRLLQKG--EPQDAAGLRTC 856 C L A L R K + + ++ + + Sbjct: 828 KHRCYLVWGHFNGAGGSAPAYLFHDRTSKWDENNPEEAIAAAASFRNFYNELTGPEILRD 887 Query: 857 IEALCD---DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 ++ + D I+ N+ L+ + R +WR TS+S L Sbjct: 888 LDRIADSAHGSISIADLPVPTAVTPLPNEHWKGTLSRRNFTRKLEQSWRFTSFSSLVFG- 946 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--- 970 +P+ D + P G G LH E LDF + + Sbjct: 947 -----TYVPQEGADRDREEEYRPLKSSDWQVLPPGTQTGNLLHEFLEQLDFKERDEMVLQ 1001 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG----VSLSQLSARNKQVEMEFYLP 1026 E L GF+S+W+ L I VL L+ G LS + ++ E+ FY P Sbjct: 1002 QRASEALSSHGFDSRWKTALLTLIRNVLALSLSGGGNGQSFRLSDICCGDRISELAFYFP 1061 Query: 1027 ISEPLIASQLDTLIRQ---------FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 + L L L ++ D L F VRG L+GFIDLVF +GRYY Sbjct: 1062 LKR-LTRDNLRILFQEISREDPGMVPDSWDLEMERLSFSSVRGWLRGFIDLVFVIDGRYY 1120 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 LLD+KSN+LG D S Y+ +A+ + M Y LQY LY LALH YL+ R+ Y E HFGG Sbjct: 1121 LLDWKSNFLGADPSGYSPEALKSVMVRKHYILQYHLYALALHAYLKQRLPGYRVERHFGG 1180 Query: 1138 VIYLFLRGVDKEHPQ-QGIYTTRPNAGLIALM-DEMFAGMTLE 1178 + YLFLRG+D + G+Y RP+ + + D + E Sbjct: 1181 IYYLFLRGIDPSRGEKTGVYFDRPSEARLTALYDGLIEKNPAE 1223 >UniRef50_C7LVF7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF7_DESBD Length = 1168 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 396/1190 (33%), Positives = 586/1190 (49%), Gaps = 52/1190 (4%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 E +D PL G LIEASAGTGKT+T+ L++RLLL + LTV+++LVVTFT Sbjct: 2 EPMDLCTAPLDGTTLIEASAGTGKTYTLTGLFVRLLL--------EKNLTVDQILVVTFT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 +AAT ELRGRIR + ++ E + E L AA+ L LA R D A Sbjct: 54 DAATEELRGRIRKRLSDVAGVLAGELEADEELEWDLLARFGGTDAARRLELALRNFDLAQ 113 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQRML N FE LF+ QL D S LR Q C DFWR H PL V + Sbjct: 114 IFTIHGFCQRMLGRNGFECSALFDTQLEPDLSDLRRQVCVDFWRSHILPLGGLTGTEVRK 173 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 P L G+ I + A + + +K W E+ Sbjct: 174 QL-TPDHLTEMSGLPFLGQRIRIVPGTLAPDPAPLDRA-VREACERLKASWSVMEPEVRT 231 Query: 246 LI--ESSGIDRRKFNRSNQAKWIDKISAWAEEE-TNSYQLPESLEKFSQRFLEDRTKAGG 302 L+ + + R+F+ + + + + ++ + ++L + + +++ TK Sbjct: 232 LLLARADNFNARQFSPQKLDQRLKATRDFLNDPRLDAKEQLKALGELTSTYVQGMTKKAF 291 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLV------ITRA-LAEIRETVAREKRRRGELGFDDML 355 P H LF+ I +L + ++R L+ + A L+ + + KRRR LGFDD+L Sbjct: 292 TAPEHRLFDEIQNILDQVEALRHLLGPFVVHLRHAFLSGVTARLDELKRRRNVLGFDDLL 351 Query: 356 SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-HQPETALLLIGD 414 + +AL S L AA RT++ A+IDEFQDTD QY IFR ++ E +L LIGD Sbjct: 352 RNMHAALAS---PELVAAARTQYRAALIDEFQDTDGLQYDIFRTLFATGDGENSLFLIGD 408 Query: 415 PKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA--FMFRE 472 PKQAIY+FRGAD+ TY+ A TL N+RS P ++ +VN+LF + D+ F+ + Sbjct: 409 PKQAIYSFRGADLHTYLTAADSCERGMTLGVNYRSTPELIAAVNRLFFRPDNPRPFLDPK 468 Query: 473 IPFIPVKSAGKNQALRFVFKGETQPAMKMWLME--GESCGVGDYQSTMAQVCAAQIRDWL 530 I + PV + K + RF G+T M +W ++ + G + + AA+I L Sbjct: 469 IAYQPVSAPDKERD-RFREDGQTPAPMVLWQVKSADKPLAKGALAPRICRAVAAEISRLL 527 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 + G + + P+ DI+VLV + + + AL L IPSV +++ SVF + Sbjct: 528 RGAAEGRIRIGDA----PLLPGDIAVLVETHAQGEAIHQALGALRIPSV-VTHTSSVFAS 582 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 EA E+L +L+ + +R LR+ALA M+GL A D+ ++ D + E F R+ Sbjct: 583 PEASELLSVLRGMAECQRPAALRTALAAPMIGLTAPDLALIDEDGEKLEEWFERFLACRE 642 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ-LESEHALVR 709 +W +RGVM +R L + +++ + L++ GERR+T++LH ELL + + HAL+ Sbjct: 643 LWDRRGVMAAVRRLFAGQDVRKRLVSLPDGERRMTNVLHCLELLHSRERESGAAMHALLT 702 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNFRVQEQAFY 768 W ++ + Q+RL++D+ VQIVTIHKSKGL+YP+V+ PFI R E Sbjct: 703 WFARRL--GTEGTEESQLRLDTDRDAVQIVTIHKSKGLQYPVVFCPFIFGRARCPEDRAL 760 Query: 769 HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 L P + A +E AE +RLLYVALTR+ C + Sbjct: 761 VHEDGLLLDLGTEELPRRIGQALSEAQAERVRLLYVALTRAKCRCYAIWGRINEAETSGA 820 Query: 829 GDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL 888 A E D + + L +DDI + + +L Sbjct: 821 AWLFHGHRADENSTLSWETVDEDMVCADLRVLANDDIEVAELPDAEPKQGPPQFTHAPDL 880 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG 948 + R+ G + + S++GL + A+ + +D AS + FP G Sbjct: 881 RCRNWDRVLGSGFGLASFTGLTRGMEHGARPGLDEVD------ASGQAADEWSMANFPCG 934 Query: 949 ASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGV 1007 A+ G+ LH +FE +DF + P V E L GF+ W + + + VL A L E G+ Sbjct: 935 AAAGSCLHRIFERIDFADEITIPAAVTEALAAYGFDPAWHQTVHDMVKRVLHADLGE-GL 993 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD-----PLSAGCPPLEFMQVRGML 1062 L + ++K VEMEF P+ P+ L + R L L F RG + Sbjct: 994 QLGGIEQKDKLVEMEFLFPL-RPVTRETLAAVYRDSAGLLPPDLPERMGNLRFEPRRGFM 1052 Query: 1063 KGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 GF+DLV R ++YLLD+KSNWLG YT A+ AAM Y LQY LY LAL R+L Sbjct: 1053 TGFMDLVVRSGRKFYLLDWKSNWLGPTPGHYTPDALHAAMAGSHYFLQYHLYCLALKRHL 1112 Query: 1123 RHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 R +DYE FGGV Y+FLRG+D + P QG++ RP+ + +D+ Sbjct: 1113 ALRKPGFDYEKEFGGVRYVFLRGIDPQTPGQGVHANRPDPRFLDALDKAL 1162 >UniRef50_A8ZX09 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX09_DESOH Length = 1203 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 399/1218 (32%), Positives = 573/1218 (47%), Gaps = 74/1218 (6%) Query: 2 SDVAETLDPLRLPLQG--ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 E D L L G L+EASAGTGKT+ I L+LRL+ V+ + Sbjct: 1 MARREPFDILCADLSGGITTLVEASAGTGKTYAIVGLFLRLIAETDAG--------VDNI 52 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEIDD-KAQAAQWLLLA 117 L VT+TEAAT EL+G+IR+ + + A T + +PL + LL++ + +A AA+ L A Sbjct: 53 LAVTYTEAATQELKGKIRTALRKAATAFKTGTMSGDPLIDGLLKKRETTRAVAARRLKRA 112 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 D+AA+FTIHGFC RML AFESG+LF +++ ++ L Q DFWR+ Y Sbjct: 113 LEAFDQAAIFTIHGFCSRMLGEFAFESGVLFGAEMVTNQDELVQQVARDFWRQRFYGASP 172 Query: 178 EIAQV-VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 V E R +N ++ + + A+ A A ++ V QW Sbjct: 173 LFLDYAVGEKGLCVDTFTRLLNNWMVFPDLRVVPGADETVDTAALEAAFAASLEQVAAQW 232 Query: 237 -RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 D + L+ S G+ R + + W ++ A+A E +KF+ + Sbjct: 233 TADKAAVQEILLNSGGLRRNLYRADWLSGWFLRMDAYAGPREGLPSEFEQFKKFTTTGIA 292 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV-------ITRALAEIRETVAREKRRRGE 348 + TK+GG HP F+ Q + ++ +R L E R+ + +K+R Sbjct: 293 EGTKSGGTVAHHPFFDTCQQHMEIRQALTGAFDRRIAVEKSRFLGEARKALDAQKQRLNI 352 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 FDD+L LD L S++ L R R+ +IDEFQDTDP QYRIF ++ Q +A Sbjct: 353 RYFDDLLLNLDRVLVSDARTGLIEKARHRYRAVLIDEFQDTDPLQYRIFSSLF--QGASA 410 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L IGDPKQAIY FRGAD+F Y++A V TL NWRS G+V VN LF F Sbjct: 411 LFFIGDPKQAIYGFRGADVFAYLEAVPGVDVACTLAENWRSRAGLVTGVNTLFQAVAAPF 470 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST----MAQVCAA 524 +F EI F P A Q R G A+++ LME + ++ +A+ AA Sbjct: 471 VFDEINFAPAAPASGAQIPRLTIDGNEPAALELRLMESDDFSTKTQKAAWIQLVARDTAA 530 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 Q + G+ +A L + RP+ A D+++LVR EA V++AL+ L + S L Sbjct: 531 QAARLVALGREQKAWLGD----RPLAAEDMAILVRRNTEAILVQEALSRLNVHSTILKAG 586 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 D +F + EA EM LL AV + ++ A AT MMG +A I L+ + D VVE Sbjct: 587 D-LFGSHEAFEMQVLLSAVAFAHDLSLVKGACATQMMGHDARRIAGLSLEADTTDPVVER 645 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-S 703 F YR +WR+ G M M L+ + L+A GERR T++ H++ELL + Sbjct: 646 FLSYRDLWRRHGFMKMFSRLLRREEVLPRLMAFPDGERRCTNLFHLAELLHRTALEAHYG 705 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 LVRWL + Q+RLESD V+I+TIHKSKGLEYP+ + P++ + Sbjct: 706 PERLVRWLMRQRTGLQGRNEEHQLRLESDDSAVKIITIHKSKGLEYPVTFCPYLWTGTPR 765 Query: 764 EQA-------FYHDRHSFEAVLDLNAAPESVDLAEAER-----LAEDLRLLYVALTRSVW 811 + S VLDL + ER L+E++RLLYVALTR+ Sbjct: 766 TAGGDGVACHEPREDGSLSMVLDLRSGDAEGVADRRERWYRETLSENMRLLYVALTRAKN 825 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 C + V P S L LL GE +A + I Sbjct: 826 QCYVSVVPEKADG-----------SPLAALLGTGEAGISADALERVAGQSGGSIHVTRVG 874 Query: 872 TGD--NQPWQVND-VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA 928 D P D + A+L+ + +WRV S+S +++ G D + D Sbjct: 875 PADLHAAPLSAEDGGAEAKLSCRRFPGTIAADWRVASFSAMRRSFSGTEADHVAADDGGV 934 Query: 929 AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP---VDPNWVREKLELGGFESQ 985 ++ P QFP GA G F+H +FE LDFT V +L F+ Q Sbjct: 935 TPDPELLSAPYTGIAQFPAGARAGLFMHEVFEYLDFTNADPVYREELVSRELSRYNFDRQ 994 Query: 986 WEPVLTEWITAVLQAPL----NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 W + + + VL PL GV L + + E+EF+ P+ + L R Sbjct: 995 WRGPVCDMVDRVLSTPLPPVSGGEGVRLDSVPMDCRINELEFFFPL-RSVSPESLAAAYR 1053 Query: 1042 QF------DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 Q D S L F RG+++GF+DLVF GRY+++D+KSN LG + +Y+Q Sbjct: 1054 QAGAGPGNDRFSHALKALAFSPARGVMRGFVDLVFFSAGRYFIVDWKSNLLGPNPESYSQ 1113 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK-EHPQQG 1154 + M+ Y LQ LY +AL++YL R+ YDY FGGV Y+FLRGVD P G Sbjct: 1114 TRLREVMEKEFYLLQAHLYAVALNQYLSARLPAYDYASDFGGVYYVFLRGVDPAAGPDYG 1173 Query: 1155 IYTTRPNAGLIALMDEMF 1172 IY P+ L+ + Sbjct: 1174 IYRETPSVELMRALTRCL 1191 >UniRef50_B8FB94 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB94_DESAA Length = 1167 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 387/1197 (32%), Positives = 581/1197 (48%), Gaps = 79/1197 (6%) Query: 14 PLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELR 73 PL+G LIEASAGTGKT+T+ +LY+RLL+ + L V+++LVVTFT AAT EL+ Sbjct: 11 PLEGVNLIEASAGTGKTYTLTSLYIRLLI--------EKGLLVDQILVVTFTVAATQELK 62 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 RIR+ + R A + D+ L + +++E + Q+ + A R+ DEAAVFTIHGFC Sbjct: 63 DRIRNRLKIARDAFDGKEVDDDLVQAVVKE-HNNPQSRLRVEDAIRRFDEAAVFTIHGFC 121 Query: 134 QRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 QR+L NAFESG F+ +L D + DFWRR Y P I + P+ Sbjct: 122 QRVLGENAFESGASFDAELATDNQDFLMEIARDFWRREFYEAPELIIAYAMHRTRTPEYY 181 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGID 253 R + + P I+ P ++ S A V W + ++ A+ ES + Sbjct: 182 ARLLEYAAK--YPGIRIIPQAEKPEFSALDGFKAARKKVADAWPANLDQVLAVFESGDLK 239 Query: 254 RRKFNRSNQAK---WIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF 310 ++ + + K + + + + + L + F ++ K G E P+ F Sbjct: 240 ANQYGKPDSGKAQVFAQAMDDYLQAGEPGFPLFPQFKYFCADTVQKAGKKGCEIPKLDFF 299 Query: 311 EAIDQL------LAEPLSIRDLVITRALAEIRETVA-REKRRRGELGFDDMLSRLDSALR 363 +L + L L + + + E K + F+D++ AL Sbjct: 300 NDCQELQEAGEEMERELEQYLLYLDQEVFRFAEKAEPERKTAKNIRFFNDLVLGFQKALS 359 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 G LA A+R ++ A+IDEFQDTD QY IF ++ + AL LIGDPKQAIY FR Sbjct: 360 GPMGPALADAVRKKYQAALIDEFQDTDAAQYDIFYNLFAGR-RQALFLIGDPKQAIYGFR 418 Query: 424 GADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 GAD+F+Y++A V Y+L+ NWRS+P ++ VN +FS+ AF+ I F V+ Sbjct: 419 GADLFSYLQASRNVEESYSLENNWRSSPQLIRGVNAVFSRNPQAFVLDGIEFKSVRPKPG 478 Query: 484 NQALRFVFKGETQPAMKMWLM---EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 + KG+T P +++W + E ++ +G+ Q+ + A+++ L G+ Sbjct: 479 VNPALPLEKGQT-PPLEIWAVAPKEDKAVTIGEVQNIAVRAVASEVSRLLGLGE------ 531 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 SDI+VLVRS +A VRD L + SV L+ +FET EA E+ ++ Sbjct: 532 --------YSPSDIAVLVRSNMQAQAVRDGLRQAGVHSV-LNRTGDLFETPEAVEIRRVM 582 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 A R +++AL+ S +G A +++ L E + V+ F +IW+K G M M Sbjct: 583 TAAAA-NRLQNVKAALSVSFLGWTAEELDRLAPGEEVVEKVLTLFSDLHEIWQKSGFMRM 641 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPD 719 M + + +L GERRLT+I+H++E+L +A + + L++WL + + Sbjct: 642 FTYFMHNKELPSAVLTLPEGERRLTNIMHLAEVLHQAEKERKLGVSGLIKWLDRQMDLSS 701 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN---FRVQEQAFYHDRHSFEA 776 Q+RLESD VQ+VT+H SKGLE+P+V+ PF+ R +HD E Sbjct: 702 PRKDEHQLRLESDAQAVQVVTMHGSKGLEFPVVFCPFMWQESEPRKGTPLTFHDPDQDER 761 Query: 777 V-LDLNAAPE-SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 + LDL A + A+ E +AE++RL YVALTR+ C + + + + Sbjct: 762 LTLDLRAEDSPHREQAKLENVAENVRLAYVALTRAKDRCYMLWGAINKAQT--------- 812 Query: 835 QSALGRLLQKGEPQD--------AAGLRTCIEALC---DDDIAWQTAQTGDNQPWQVNDV 883 SA LL G D L +E L ++ IA Sbjct: 813 -SAPAYLLHGGAVNDGRVEIRLNYKTLFEDLEELAKGAENAIALTLPPEEIYPAAFAAGG 871 Query: 884 STAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT-- 941 + L A + P W VTS+S L G + V E Sbjct: 872 ANPALEALEFKARPDLTWSVTSFSALSMDQPGRNEPGADEAAAPGPQVEIEDEPEEEAAD 931 Query: 942 PHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQWEPVLTEWITAVL 998 FPRG PG LH +FE+LDF + V++KLE+ GFE QW + + VL Sbjct: 932 IFAFPRGIGPGIMLHDIFENLDFLDHAPKKVLDLVQDKLEVYGFEDQWAQPVAGMVQNVL 991 Query: 999 QAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 PL + +LS++ + EMEFY PI + + + + P L F Sbjct: 992 FCPLEKERPDFTLSRIPMTARSNEMEFYFPIKK-ITPKAFEGIFGNGLPKDRP-DRLHFS 1049 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 V+G + GF+D+VF +GRYY++D+KSN LG Y +++A AM H+YDLQY LYTL Sbjct: 1050 PVKGFVHGFMDMVFCFDGRYYIVDWKSNHLGNAPEDYGPESLAHAMVHHKYDLQYLLYTL 1109 Query: 1117 ALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPNAGLIALMDEMF 1172 AL +L RI DYDYE HFGG+ Y+FLRGVDK P+ GI+ RP +I + Sbjct: 1110 ALDLHLAQRIKDYDYEKHFGGIFYIFLRGVDKSLGPEYGIFQDRPGLDMIQRLKGAL 1166 >UniRef50_A4VRQ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VRQ5_PSEU5 Length = 1182 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 421/1207 (34%), Positives = 599/1207 (49%), Gaps = 71/1207 (5%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD L P G LIEASAGTGKT+T+ ALY RLLL R L+V ++LVVT+T A Sbjct: 3 LDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLL--------ERQLSVGQILVVTYTTA 54 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 ATAELR RIR+ + +L + + RL D A + LLLA DEAA+F Sbjct: 55 ATAELRERIRARLADLLAVYDGTPSSDDFLNRLHARYPDDAS-RRRLLLAVHGFDEAAIF 113 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR L AFE+G F+ +L D+ + AD WR A+ + ++ Sbjct: 114 TIHGFCQRALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELADADPAWARFLAKSR 173 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA-L 246 PQ L + + +L ++ P +A+ + A + W+ A A L Sbjct: 174 ITPQWLRQRLRSHLGKPYLRVE---PQGAPVAADLRPVEAAWQRAAELWKQAGTAWIAEL 230 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 + G+ + A W ++ A+ + + LPE KF R L K G + P Sbjct: 231 LTHGGLSQSTHKSVKFAPWQAELDAYFADPAVMFDLPEGAAKFGVRALSKACKKGFDAPV 290 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALA-------EIRETVAREKRRRGELGFDDMLSRLD 359 L +A+D+L + R +A + + K + L FDD+L+RLD Sbjct: 291 CELAQALDELADQVADALPAGKQRLIALQVALLERLNRELPERKAAQRLLAFDDLLNRLD 350 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL+ GE LAA++R +P+A+IDEFQDTDP QY IF RI+ + +L +GDPKQAI Sbjct: 351 QALQGPVGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGRDASLCFVGDPKQAI 410 Query: 420 YAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV 478 YAFRGAD+ TYM A+ + + L TN+RS P ++ ++N+LF F ++ + PV Sbjct: 411 YAFRGADLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFDH-PQPFAQPDLRYPPV 469 Query: 479 KSAGKNQA-LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 +A K +A LR +GE P +WL + + G GD A A +I L A G Sbjct: 470 GAADKPRASLRLAEEGEAAPLSLVWLGD-DPLGKGDAAQLAASDTARRIAVQLAAAAEGR 528 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEML 597 A P++ DI+VLV + ++A + D L +PSV RDSV+ + EA E+ Sbjct: 529 AGFDKDGGFAPLKGGDIAVLVANHRQAGMIADELAARGVPSVR-RGRDSVWRSEEAGELA 587 Query: 598 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGV 657 +L A P RE LR ALAT ++G +A D+ +D+H WD E + Y Q+W+++G Sbjct: 588 AVLAAYAEPGREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYHQLWQQQGF 647 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILE 717 M + RA + + +AE LLA GERRLT++LH+ ELLQ L+ W + Sbjct: 648 MRVFRAWLDEQAVAERLLARVDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQ-RG 706 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHS 773 + +RLESD VQIVTIH SKGLEYPLV+ PF+ + ++ Q+ A HD Sbjct: 707 SEGAGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNQDSARCHDADG 766 Query: 774 FEAVLDLNAA--PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG-- 829 + +LDL + ++++ A E AE LRL YVALTR+ L P+ + K G Sbjct: 767 -QPLLDLGSGELEDNLERARQEVFAEQLRLAYVALTRARDRLWLHWGPVSLPKAKKDGSL 825 Query: 830 -DTDVHQSALGRLLQKGEPQDAAGLRTC------------------IEALCDDDIAWQTA 870 D +H SAL LL E L + A D +A Sbjct: 826 PDEGLHSSALAWLLHGRELPGEQPLTELGNHLASLNGGSLRLAIERLVATSDGRMACLPL 885 Query: 871 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 930 ++ + + + E A+ L R WR+ S+SGL H M D DA Sbjct: 886 ESREASTQGSSRAAPPEQLAQ-LNRSLYSAWRIGSFSGLAAGMH------MEAPDRDALA 938 Query: 931 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVL 990 + E P FPRGA GT LH++ ED + V L+ G W V Sbjct: 939 MPDAGE-PGSGFFAFPRGARAGTCLHAILEDWARGKGELAQLVEPALKAYGLPLDWRDVA 997 Query: 991 TEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD----PL 1046 T + VLQ L+ G++L+ L A + E+ F P+ E + L + PL Sbjct: 998 TAQLERVLQTDLDGAGLTLASLLAARRLPELGFTFPVRELDVVRLRALLTDPANGLAAPL 1057 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 LEF ++G LKGFIDL F H GR+Y+ DYKSNWLG D+S Y + + A+ Sbjct: 1058 REAAARLEFDSLKGFLKGFIDLTFEHGGRWYIADYKSNWLGPDASYYGGERLLQALAGEH 1117 Query: 1107 YDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIA 1166 Y LQY +Y +AL R+LR R+ D+ + GG YLFLRG+ P+ G+Y RP+ L+ Sbjct: 1118 YYLQYLIYLVALRRFLRQRLTDFR-DEQLGGAFYLFLRGM----PEAGVYFARPDDALLD 1172 Query: 1167 LMDEMFA 1173 +D +F Sbjct: 1173 GLDRLFE 1179 >UniRef50_A9BRA9 Exodeoxyribonuclease V, beta subunit n=4 Tax=Comamonadaceae RepID=A9BRA9_DELAS Length = 1274 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 467/1265 (36%), Positives = 638/1265 (50%), Gaps = 106/1265 (8%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-------GSAAFPRPLTV 56 + LD R PL G RLIEASAGTGKT+TIAALYLRL+LG G S AF RPL Sbjct: 11 TSHVLDAQRFPLWGSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMP 70 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNP---LYERLLEEIDD---KAQA 110 ++LV+TFT AAT EL RIR + E E P L E + + +A Sbjct: 71 PDILVMTFTRAATRELSDRIRKRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERA 130 Query: 111 AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 A L +A MD+AA+ TI +CQRML +AF+SG LF++ L DES + +A D+WR+ Sbjct: 131 AWRLAMAAECMDDAAIHTIDAWCQRMLREHAFDSGNLFDETLEPDESQRQTEAAQDYWRQ 190 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 CYPL E+ V + W AL+ D+ L+ + L Q +R+ Sbjct: 191 QCYPLSDELLDEVLKIWPHVGALVDDMRALLREPPVPGAGEGSLADCLQRAMEQRRSRLL 250 Query: 231 TVKQQWRDAVGELDALI------ESSGIDRRKFNRSNQAKWIDKISAWAEEETN-SYQLP 283 + W D L + + D+RK + W+ ++ W+ + L Sbjct: 251 ALAAGWDDKAQRLQLWLDGQLDGHGALWDKRKLQPARYTGWLAALADWSRAPLDGPLALT 310 Query: 284 ESL-EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD----LVITRALAEIRET 338 E+ + S L + K PL A Q L L V A A + + Sbjct: 311 EAARHRLSPEGLAEAFKGSAGDVLMPLELAELQALLLQLEQLPPVSVAVRLHAAARVAQR 370 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 +A KR+ G GF DML RLD+AL ++G VL I ++PVA+IDEFQDT P QYR+F Sbjct: 371 LAHLKRQAGSFGFADMLQRLDTALAGDNGAVLRERILAQYPVALIDEFQDTSPLQYRLFD 430 Query: 399 RIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMV 454 +I+ + P +ALLLIGDPKQ+IY FRGADI +Y++AR HY L TN+RS +V Sbjct: 431 QIYRTAANDPHSALLLIGDPKQSIYGFRGADIHSYLQARRATEGRHYVLGTNYRSTEALV 490 Query: 455 NSVNKLFSQTD-----DAFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 +VN F+Q + AFMFR +PF PV + G+++ L + Sbjct: 491 GAVNHWFAQAEQRSGEGAFMFRRGSHNPLPFEPVAAQGRSEQLHTRDGAMHALTVAWSAG 550 Query: 505 EGESCGV------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 E G+ + + A CA QI WL Q G + +R +DI+VLV Sbjct: 551 RDEDTGIPLPLAADEVRRRFAAHCAEQIVQWLTDPQAG--FVQPDGRLVRLRPADIAVLV 608 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 R+ +EAA VR L + SVYLS++DSVF + EA ++L+ L+AV P +R+ LAT Sbjct: 609 RTGREAAAVRRELQARAVASVYLSDQDSVFASDEAHDLLYWLRAVAAPLDAQAVRAGLAT 668 Query: 619 SMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 ++GL+ ++ L DE A+D E+ IW + GV+ MLR + ++ L Sbjct: 669 RLIGLSLDELAWLAADEEAFDARSEQLRELHSIWLRLGVLAMLRQTLYRLDLPVRWLQDP 728 Query: 679 --GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLV 736 GGERRLT+ LH++ELLQ A QLE E AL+RWL+ I P S + Q +RLESD LV Sbjct: 729 AMGGERRLTNYLHLAELLQTASAQLEGEQALIRWLATQIETPGSGSEEQVVRLESDADLV 788 Query: 737 QIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-----------YHDRHSFEAVLDLNAAPE 785 ++VT+HKSKGLEYPLV LPF +FR E+A D + L L+ + E Sbjct: 789 KLVTVHKSKGLEYPLVCLPFAGSFRPMERARTPFLTLSAQDESQDDAAPARRLLLDFSDE 848 Query: 786 SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG 845 + A+ ERL EDLRL YVALTR LG+APL R G + Q A G LL Sbjct: 849 ELAQADRERLREDLRLFYVALTRPRHALWLGLAPLKRGNGKACVN---EQGAAGYLLGGT 905 Query: 846 EPQDAAGLRTCIEALCDDD--IAWQTAQTGDNQP--WQVNDVSTAELNAKTLQRLPGDNW 901 EP+ A G R ++ LC +D +AW+ Q WQ +T +A W Sbjct: 906 EPRSAQGWRDGLQQLCGEDPHMAWRDLDAVPLQRTRWQPPAGATPLHDAPAYDARFDTRW 965 Query: 902 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT-------------------- 941 + S+S L + + ++P A +E P Sbjct: 966 GIGSFSALVRAMAAPSLPVLPVAVQRPAEDEQALEPPPSPELADIAGLAGLQPLQDGPAG 1025 Query: 942 ----PHQFPRGASPGTFLHSLFEDL---DFTQPVD-----PNWVREKLELGGFESQWEPV 989 H+F RG G F+H E L DF PVD + + + E G Q + Sbjct: 1026 GPAVWHRFLRGPVVGNFVHDQLEWLGGEDFALPVDGQGALADRLVRRCERAGRGEQARDL 1085 Query: 990 LTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAG 1049 L W+TAV+ PL V+L+ L + EMEF+LP + L A ++D L R+F Sbjct: 1086 LA-WLTAVVHQPLAPLDVTLATLGPQ--LSEMEFWLPARQ-LPAERIDQLCRRFILPGQE 1141 Query: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 P L + GML GF DLVF HEGRY++LDYKSN LG D +AY Q+A+A AM HRYD+ Sbjct: 1142 RPALPQRSLHGMLMGFADLVFCHEGRYWVLDYKSNHLGPDGAAYGQEALARAMLHHRYDV 1201 Query: 1110 QYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALM 1168 Q LY LALHR LR R+ Y+ + GG +Y FLRG+D P G++ P L+ + Sbjct: 1202 QAALYLLALHRLLRSRLGTAYEPQRQLGGALYYFLRGIDG--PAGGMHAMAPELPLLDAL 1259 Query: 1169 DEMFA 1173 DE+ Sbjct: 1260 DELLG 1264 >UniRef50_C5JAU7 Exodeoxyribonuclease V, beta subunit n=1 Tax=uncultured bacterium RepID=C5JAU7_9BACT Length = 1228 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 458/1246 (36%), Positives = 635/1246 (50%), Gaps = 99/1246 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L PL PL G RLIEASAGTGKT+TIA LY+RL+LG G + PLT E+L Sbjct: 1 MTGLPPELQPLDFPLVGNRLIEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTD----NPLYERLLEEIDDKAQ--AAQWL 114 VVTFT AAT ELR RIR+ + E TD +PL L +A A+ L Sbjct: 61 VVTFTRAATRELRERIRARLAEAAACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARRL 120 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA MDEA+V TIHG+C RML +AF+S F ++L D+ L + D+WR H P Sbjct: 121 QLAAEWMDEASVETIHGWCHRMLQEHAFDSDTPFTRELAADQRALLTEVVRDYWRIHLAP 180 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 L R A +F+ W L ++R + + ++ AP P L R+ R+ +K+ Sbjct: 181 LSRVAAAELFDCWPKIDRLQAGVSRIFR-QVGLLAAPEPFAALLEERYQA-RTRLVEMKR 238 Query: 235 QWRDAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES--LEK 288 ++ + L AL++ + ++ RK W+D ++AW + + + Sbjct: 239 RFVGWLPALQALLDEAVARKWVNGRKLQVRYYQPWLDLLAAWCADARQPFPAWSDAAWWR 298 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRALAEIRETVAREKRR 345 + L + K G + P HP+F A++ L E + + ++ A + E A EK Sbjct: 299 LTPAGLAEAWKVG-QPPAHPVFLAVETLHGEQVRWSMLCQRLLVHAAHWVAERFAAEKAG 357 Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF----RRIW 401 + FDD+L RLD+ L+ +G LAA +R +FPVA+IDEFQDTDP QYRIF R + Sbjct: 358 LACMEFDDVLLRLDAGLQGPNGARLAALLRRQFPVALIDEFQDTDPVQYRIFAAIYRDLA 417 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-TLDTNWRSAPGMVNSVNKL 460 TAL+LIGDPKQAIYAFRGADI TY+ AR + TL N+RS MV +VN+L Sbjct: 418 GADDGTALVLIGDPKQAIYAFRGADIHTYLAARRALAGRIDTLGRNFRSTAAMVQAVNRL 477 Query: 461 FSQTD-----DAFMFR-----EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 F+ + AF+ R IPF PV + G+N V G +QPA+ + Sbjct: 478 FAAAETRSGGGAFLQRVAGEDPIPFFPVTAQGRNDLW--VVDGVSQPALTLAW------- 528 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRD 569 G+ ++ MA CA+++ LQ GQ G A GD + P+R D++VLV+SR E A +R Sbjct: 529 SGEPRAWMADACASEMVRLLQLGQEGRAGFRAGDGSLTPLRPVDLAVLVQSRAEYALLRA 588 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL + VYLS+++SVF + A EM L A PE LR+ALAT+ +G+ L+I+ Sbjct: 589 ALARRGVRCVYLSDQESVFASPCAFEMRHWLAACAAPEDTVLLRTALATATLGVGWLEID 648 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA-----GGERRL 684 L DE + + +F G R+IWR++G++PMLR L+ + LLA GER L Sbjct: 649 ALGRDERLLEQRMRQFVGLREIWRRQGLLPMLRRLLHEFAVPSRLLAGEIDGERSGERLL 708 Query: 685 TDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL---ESDKHLVQIVTI 741 TDILH++ELL E E A++R+L + + + D A + RL ESD LV+IVT+ Sbjct: 709 TDILHLAELLGGQAVAGEGELAVLRFLDEALRQADEGAREESERLSRLESDADLVRIVTV 768 Query: 742 HKSKGLEYPLVWLPFITNFR-VQEQAFYHDRHSFEAVLDLNAAPESVDLA--EAERLAED 798 HKSKGLEYPLV++PF + R V + H V L A + LA + ERL E+ Sbjct: 769 HKSKGLEYPLVFVPFAGSCRPVSARDLPMRGHDDAGVEQLLFAADEAQLARLDLERLREE 828 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 R LYVALTR+ + +GV R SAL LL E AG+ + Sbjct: 829 TRRLYVALTRARYAVWVGVVLERR----------FANSALHALLGGPEELSEAGIAALLM 878 Query: 859 AL--CDDDIAWQTAQTGDNQPWQVNDV----STAELNAKTLQRLPGDNWRVTSYSGLQQR 912 L D I A + +Q +D + A+ +R D W + SYS L Sbjct: 879 PLNRADGTIVATPAPAPEWHRFQPHDGEGTGAAWRGGARQARRRVRDPWWMASYSALLAP 938 Query: 913 GHGIAQDLMPRLDVDA--------------AGVASVVEEPTLTPHQFPRGASPGTFLHSL 958 +A + + + + H FPRGA GT LH L Sbjct: 939 LGPMAPNAPESPGEAQFRELALERFVPPAPSDGSGASDGGEAGLHTFPRGAKAGTVLHEL 998 Query: 959 FEDLDF----TQPVDPNWVR----EKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLS 1010 D VR +LE G+ S W LT W+T L +G + Sbjct: 999 LAWCGVCGFGAVAADSERVRQEVARRLEPRGW-SAWRDPLTRWLTTFLTTRFELSGSGGA 1057 Query: 1011 QLSARN---KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 R+ QVEMEF+L + L +QLD PPL+ + GM+KGF+D Sbjct: 1058 LFCPRDLEHYQVEMEFWLAVGH-LPTAQLDQWACTTIEPGRDRPPLQGRALHGMVKGFMD 1116 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 L+F H RYYL+DYKS WLG D +AYT +AM A + R+DLQ LY ALHR L R+ Sbjct: 1117 LLFEHRRRYYLIDYKSTWLGADDAAYTPEAMRAEILHARHDLQGILYLYALHRQLAARLV 1176 Query: 1128 DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 DY E H GG +++FLRG+ E P QGIY P A ++ +D +F Sbjct: 1177 DYAPERHLGGALFVFLRGL--EAPGQGIYRLEPTAEMMRALDGLFG 1220 >UniRef50_C3X2X2 ATP-dependent exoDNAse beta subunit n=2 Tax=Oxalobacter formigenes RepID=C3X2X2_OXAFO Length = 1253 Score = 901 bits (2328), Expect = 0.0, Method: Composition-based stats. Identities = 413/1264 (32%), Positives = 606/1264 (47%), Gaps = 115/1264 (9%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M V E D PL G RLIEASAGTGKT+ I LYLRLLL + V E+L Sbjct: 1 MKPVNE-FDVFSCPLYGWRLIEASAGTGKTWNIGGLYLRLLL--------EKKREVREIL 51 Query: 61 VVTFTEAATAELRGRIRSNIHEL--RIACLRETTDNPLYERLLEEI----DDKAQAAQWL 114 VVTFT AAT ELR RIRS I + TD+ E+LLE+ DD + L Sbjct: 52 VVTFTRAATDELRDRIRSRIGRALAYLEGRAADTDDGFVEKLLEKRMAAGDDPQEMTALL 111 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA + D+AA+FTIH FCQR L L+AF SG F + D+S L +A DFWRRH Sbjct: 112 RLAFQSFDQAAIFTIHSFCQRALALSAFSSGQAFSVKAEADDSELVREAVNDFWRRHVAG 171 Query: 175 --LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAP---PPDDETLASRHAQIVARI 229 L ++ + + P L + R+L +K P P E ++ A Sbjct: 172 GRLSPALSAWLEKKRFTPDRLEALLRRHLARPLATVKWPETAPEAPEAAEDGSGKLEATF 231 Query: 230 DTVKQQWRDAVGELDALIESSG----IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES 285 W + AL++ + + R ++ + N++ + + Sbjct: 232 HMAASCWTSEKETVKALLKDAAERNVLYRNRYKAPAIESAARAFDRFFAA-GNAFAMIGN 290 Query: 286 LEK---FSQRFLEDRTKAGGETPRHPLFEAIDQLLA-------EPLSIRDLVITRALAEI 335 K + L TK G PRHP F D+L+ + R ++ R LAE Sbjct: 291 TAKTELMADTRLSGSTKKGQTVPRHPFFGMADRLIETCRKRENALEAARYGLLKRFLAEA 350 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 ++ +KR R + FDDML+ L AL LA A+R +FP A+IDEFQDTDP QY Sbjct: 351 TVSLKEKKRERRTIAFDDMLANLYEALNDPGMPWLAEAVRMQFPAALIDEFQDTDPLQYA 410 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGM 453 IF ++ PE+ + L+GDPKQAIY+FR AD+ TY AR + A Y+L N RS P + Sbjct: 411 IFSAVYRE-PESPVFLVGDPKQAIYSFRNADLHTYFAARENLDALARYSLAENHRSVPEL 469 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ---PAMKMWLM---EGE 507 + + N LFS AF+ + F+PV+ + + G+ PA+ +W++ GE Sbjct: 470 IAACNTLFSVNKRAFLQDGLDFVPVRPGKRELPVLTDESGDGPGPFPALCVWMLGQENGE 529 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 + + A ++ + AG+ G+ + RP A D++VLVRS +EAA V Sbjct: 530 WLKRSAARKQALEAMADEVARLINAGKAGKLAI----GGRPAGAGDVAVLVRSHREAAMV 585 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 R AL I SV LS +SVF++ EA+E+ LL A++TP+ E+ L +A++T M+GL+A Sbjct: 586 RQALARRGIGSVSLSQ-ESVFQSREARELECLLFAMLTPDDESLLMAAVSTEMIGLDAGA 644 Query: 628 IETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI 687 IE L DE A + F YR+ WR+ G LR L+ + LLA A GERRLT++ Sbjct: 645 IEALAGDEAALSGWIGRFGQYRRAWRENGAACALRWLIHREGVVSRLLAFADGERRLTNL 704 Query: 688 LHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 +H+ EL+ + +L+RW ++ A +++RLE+D+HLVQ++T+H+SKGL Sbjct: 705 MHLLELVGRESGTENAPDSLMRWYAERREGK-KKAEEEELRLETDRHLVQVMTLHRSKGL 763 Query: 748 EYPLVWLPFITNF------RVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA---ERLAED 798 E+P V+ P + + E YH+ H+ A E + + ER AED Sbjct: 764 EFPFVFCPLLWDNFPRRGNETGEGLEYHEGHATVVDYRKLADDEQETVRKNAALERAAED 823 Query: 799 LRLLYVALTRSVWHCSLGVAPLVR----RRGDKKGDTDVHQSALGRLLQKG--------- 845 +RL+YVALTR+V+ C L VR + K T+ +S L L+ Sbjct: 824 MRLIYVALTRAVYRCYLVAGCYVRVTRRGESETKTTTESRKSLLNWLVAGDGFAPPDWLA 883 Query: 846 -------------EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 EP+ + + C IA +D + L A Sbjct: 884 AKDGKKEETVLLPEPEQIGSAWESLASRC-PHIAVTALPDSVGATVDASDETATLLTAAR 942 Query: 893 LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE-EPTLTPHQ----FPR 947 + G WR+ S+SGL + + AG++ + E P P FP+ Sbjct: 943 FDKTVGTGWRMNSFSGLMRNAVDDTETGDHDERALFAGLSGLSENRPEALPANDILLFPK 1002 Query: 948 GASPGTFLHSLFEDLDFTQPVDPN-----WVREKLELGGFE-----SQWEPVLT----EW 993 G G+ LH++FE+ DFT +++ + G + + + VL + Sbjct: 1003 GTYAGSCLHAVFENADFTDESTWEKAVESALKQFPQRVGGKLLSGAEEGQAVLKGRALKM 1062 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 + V+ PL + G+ L + + E F L + L A +L+ L+++ P L Sbjct: 1063 LGDVMATPLPD-GICLGNVGNGRRLTEWPFCLAAAR-LSAKRLNRLVKKS---GYAVPEL 1117 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 F + L GF+DLVF +GR+YLLD+KSN LG Y + M H Y QY L Sbjct: 1118 AFDDMTAYLNGFVDLVFEMDGRFYLLDWKSNHLGYRPEDYGIARIETEMAEHGYHWQYLL 1177 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV-----DKEHPQQGIYTTRPNAGLIALM 1168 YT+ALHRYL R+ DYDY HFGGV YLF+RGV + + G++ +P + + Sbjct: 1178 YTVALHRYLSGRLPDYDYGRHFGGVFYLFVRGVRPDWKNGDGTPSGVFFHKPGQETVEAI 1237 Query: 1169 DEMF 1172 D + Sbjct: 1238 DRLL 1241 >UniRef50_Q5QUQ8 ATP-dependent exoDNAse (Exonuclease V) beta subunit n=2 Tax=Idiomarina RepID=Q5QUQ8_IDILO Length = 1241 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 453/1240 (36%), Positives = 637/1240 (51%), Gaps = 90/1240 (7%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG-----SAAFPRPLTVEELLVVT 63 +PL PL RLIEASAGTGKT+TIAALY+RL++G G AF R L + +LV+T Sbjct: 19 NPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGAEETAFDRELVPKNILVMT 78 Query: 64 FTEAATAELRGRIRSNIHELRIACL--RETTDNPLYERLLEEIDDKAQ----AAQWLLLA 117 FT+AAT EL RIR+ + E +P L E+ + Q A+ L LA Sbjct: 79 FTKAATEELSDRIRARLAEAAAYFRDPEAVEGDPFLASLREDCAAQGQNLMHLARLLDLA 138 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 + MDEAAV TIHG+CQ ML +AF SG LF Q + D LR QA D++RR YP Sbjct: 139 SQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEELRLQAAGDYFRRFIYPADA 198 Query: 178 EIAQVVFETWKGPQALLRDINRYLQ-GEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 E++ + E +K P+ LL + G+AP+ S H Q R+ +KQ+ Sbjct: 199 ELSARLLEDFKSPETLLGLTYSLSKSGQAPIDGDLHSLLNEAESAHQQ---RMVAIKQEV 255 Query: 237 RDAVGEL-DALIESSGIDRRKFNRSNQAKWIDK---ISAWAEEETNSYQLPESLEKFSQR 292 V EL D ++ G + A W + A + L+KF+ Sbjct: 256 APIVQELVDKTSQAKGAATKLKQFQKFADWCGDPDLVEPEATAANWKNISTDELQKFADA 315 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 L D ++ L E I + + V A + A + +R E+G D Sbjct: 316 KLGDMPQSWAV--LGELQERIKRSKVQQQEELAKVKQHAAFWVSNRFAELQNQRAEMGHD 373 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETAL 409 DML+RL AL+ SGE LAAAIR ++PVAM+DEFQDTDP QY IF RI++ P T + Sbjct: 374 DMLTRLRDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIYNLADPHPGTGI 433 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNKLFSQTDD-- 466 LIGDPKQAIY+FR ADI+TY+KAR + HY L N+RS+ MV+ VN LF + ++ Sbjct: 434 FLIGDPKQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVDGVNALFERAEELP 493 Query: 467 --AFMFR-----EIPFIPVKSAGKNQALRFVF---KGETQPAMKMWLMEGESCGVGDYQS 516 AF+F+ ++PF PV + G + + +T PA+ + E + Sbjct: 494 RGAFLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSVSGEEKRNKDTFFR 553 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 A A I L Q G + + R V+ SDI+VLV + EA ++ AL+ + Sbjct: 554 AAANHHANLIASLLNDPQAGYYDGDDKLEQR-VKTSDIAVLVNNFNEANAIKKALSDRGL 612 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 SVYLS+R+SVF A+++L L+ A P + +RSALAT ++GL ++E +++ E Sbjct: 613 KSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQILGLPLSELEHIHSHER 672 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA-TAGGERRLTDILHISELLQ 695 W+ VE+F Y W+++GV+ ML +L+ + LL GER+L+D+LHI+ELLQ Sbjct: 673 EWEQRVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLEDRIHGERQLSDVLHIAELLQ 732 Query: 696 EAGTQLESEHALVRWLSQHILEP-------DSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + L+ ALV ++ + E + + QQ+RLESD L++I+TIHKSKGL+ Sbjct: 733 QQSLVLDGIPALVNHFAEQVNERHGFGSNSRTQSDEQQLRLESDDELIKIITIHKSKGLQ 792 Query: 749 YPLVWLPFIT-----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 YPLV++PF+ +R++ A YHD + VL + ++ E LAEDLR +Y Sbjct: 793 YPLVFMPFVAYTQAEAYRIKPPAVYHDENGELQVL-WSKDDDNKQRLSNEILAEDLRKMY 851 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VA+TR+ + + + + R + L LL GE E Sbjct: 852 VAVTRAQYATFIALEAVKEHRNN----------PLFYLLNGGESLTDELYTEVNERWQQ- 900 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN----WRVTSYSGLQQRGHGIAQ- 918 Q + D++P T + +P D W V SYS L+ G Sbjct: 901 APHTQLTRLEDDEPLVRALEQEQTTPKLTPRSMPADRKLERWWVASYSALKYEGAVTKSV 960 Query: 919 ---------DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE---DLDFTQ 966 +L+ D D A VAS E + H P+GA PGTFLH+L E ++ F Q Sbjct: 961 QAPQSPDEMNLLDERDDDEAEVASAAEPSPDSIHHLPKGAGPGTFLHNLLEESANIGFAQ 1020 Query: 967 PVDPNWVREKLELG-GFESQWEPV---LTEWITAVLQ--APLNETGVSLSQLSARNKQVE 1020 R +L G W+ L W+ A L P+N++G S+S + + E Sbjct: 1021 IAGDAAERAELVQGFCVSPYWQEHQNSLEHWLDAYLHNEFPINDSGESVSLSALEQYKAE 1080 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 EF+ SE + A +LD L+R+ P LE + GMLKGFIDLVF H G+YY+ D Sbjct: 1081 PEFWFGASE-VNAQRLDALVREHILPGHERPALEPNVLNGMLKGFIDLVFEHNGKYYVAD 1139 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVI 1139 YKSNWLGED AYT+QAM + RYDLQY +YTLALHR L+ R+ DYDY+ H GG + Sbjct: 1140 YKSNWLGEDDHAYTEQAMREKILHSRYDLQYVIYTLALHRLLKARLGSDYDYDTHVGGAV 1199 Query: 1140 YLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 YLFLRG E G + RP LI +D +FAG L + Sbjct: 1200 YLFLRGHRAETG--GAFCDRPPRKLIEQLDTLFAGKNLSD 1237 >UniRef50_Q89AB3 Exodeoxyribonuclease V beta chain n=2 Tax=Bacteria RepID=EX5B_BUCBP Length = 1180 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 363/1186 (30%), Positives = 668/1186 (56%), Gaps = 21/1186 (1%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 ++ + ++++ +PL G+ LIEASAGTGKTF++ LY+RLLLG+ + + L ++E+L Sbjct: 2 ITTIPKSINVTTIPLSGKILIEASAGTGKTFSLTILYIRLLLGITNHVKYKKGLLIKEIL 61 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTE AEL RI++ I + AC+++ ++N + +LL +I D + L AE Sbjct: 62 VVTFTEHTRAELEIRIKTYIKIFKTACIKKYSNNYVLSKLLSKITDFPKTIDILSKAENS 121 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 + E +++TIHGFC ++L LN F S ++ + ++++ L + FW+ + L +I Sbjct: 122 IHELSIYTIHGFCYKILKLNKFNSELMLQNKILKHTYPLYLKISIKFWKYYFAFLSLDIT 181 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 ++ E + P+ LL++I L + K + + + ++ +I KQ+W + Sbjct: 182 SILLEYFNNPKTLLKEILPLLNKTQLISKLTKTKRKNIVQEYYILIKKIKLFKQKWANYS 241 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWA-EEETNSYQLPESLEKFSQRFLEDRTK 299 + + I + +++R + +SN +WI+ I+AWA +++T ++ +P L+ F F+ +T Sbjct: 242 HLIHSEIIKTNVNKRIYTKSNLKRWINNITAWATQKQTKNFFIPSELKYFRYSFIIKKTT 301 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 + + F+ ID L S++++ I A EI+ +EK + +DD+++ Sbjct: 302 S-EKILDDKFFKFIDTFLDSKFSLKEIFIIDASLEIKAMFMQEKIKNRYFEYDDLITFCW 360 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 + + +++ ++ I ++PVA+IDEFQDT+ +QY IF++I+ + E L+LI DPKQAI Sbjct: 361 NMV-NKNNFNISQTILKKYPVALIDEFQDTNNKQYNIFKKIY--KKENLLILISDPKQAI 417 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 Y+F GADI +Y++A+S + Y LDTNWRS+P ++NS+N LFS+ + F+ + I F PVK Sbjct: 418 YSFSGADITSYLQAKSNIKNQYFLDTNWRSSPKIINSINLLFSRLKNPFLTKNITFYPVK 477 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 S+ N+ +F G+ QPA++ L + ++ + +Y+ ++ A I W+ +G +G A Sbjct: 478 SSRINKTTKFEVNGKNQPALRFLLNKNKNISINEYKEWISITTAKYISYWISSGIKGNAT 537 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 + + R V SDI+++VR+ EA ++ LT L I S+YL++++++F++ E E+LW+ Sbjct: 538 ITISNKVRTVNFSDIAIIVRNNLEAKTIQLELTKLNIQSLYLTSKNNIFQSKEILEILWI 597 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 LQA++ P E L+ A++T++M N +I ++ N+ W + +EF+ Y W G++ Sbjct: 598 LQAILNPNIERLLKRAMSTNIMSKNTKEIISIPNNHSYWIKLSQEFNQYLIFWNNYGILY 657 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 +++ L+ NI+ N + +IL+I ELL+E ++++ L+ WL ++I + Sbjct: 658 VIQQLIINYNISNNNNLLHNFSPNIKNILYIGELLEEKSITIKNKFLLINWLKKNITQDF 717 Query: 720 SNASSQQMRLESDK-HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVL 778 + ++ +K + ++IV+IHKSKGLEYP+ +PF T + + + Sbjct: 718 YLTKPKYIKPNYEKNNYIKIVSIHKSKGLEYPITIIPFATITFNKTVSTV--EKICFNLN 775 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA---PLVRRRGDKKGDTDVHQ 835 + + E + +ED+RLLYVALTRS+ HCS+G++ + +++ +K + Sbjct: 776 NTKIKKQKTLKIEKHKFSEDIRLLYVALTRSIIHCSIGISLAQTITQKKKIQKEKSKFKI 835 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL-- 893 + L ++Q G+ + ++ + + N + + T N+++L Sbjct: 836 NVLRYIIQSGKNHISTKKLYTELSILKKNKNIEIISEIPNIIKKNFQIPTLNTNSQSLMH 895 Query: 894 ---QRLPGDNWRVTSYSGLQQ--RGHGIAQDLMPRLDVD-AAGVASVVEEPTLTPHQFPR 947 R N+ TSYS L++ + + L + + E LTPH FP Sbjct: 896 YQVSRKFNYNYNFTSYSQLKKNIKPSTMYSTLNTKKLFELNVKKKHCFENKILTPHTFPS 955 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET-G 1006 G GT LH + +++ F + ++ NW+ +KL + +W +L W+ ++L L++ Sbjct: 956 GKIYGTLLHKILKNISFHKSINSNWLLKKLSEYNLDKRWCLILKNWMYSILYKNLDKNYN 1015 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFI 1066 + LS+L ++N E++F LPI + L A +L+ + + S+ L F ++G+L G I Sbjct: 1016 LRLSKLDSKNYIKELKFLLPIKKKLTALKLNNIFQTH-QCSSLENKLCFHPIQGILSGSI 1074 Query: 1067 DLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 DLVF + +Y+L+DYKSNW+G + +Y+QQ + ++ H Y+ Q QLY+L LHRYL+ I Sbjct: 1075 DLVFLWKTKYFLVDYKSNWIGNSNQSYSQQNIKKIIKKHHYNFQLQLYSLVLHRYLKQHI 1134 Query: 1127 ADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 +Y + +HFGG LF+R +++ Q GI+ + PN +I ++++F Sbjct: 1135 KNYSFYNHFGGTYILFIRSINEIPSQNGIFYSIPNIEIIKKLEQIF 1180 >UniRef50_C7I4N6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I4N6_THIIN Length = 1202 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 418/1230 (33%), Positives = 602/1230 (48%), Gaps = 91/1230 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEEL 59 M+ + E LD L LPLQG RLIEASAGTGKT+TIAALYLRL+LG G A AF RPL+ E++ Sbjct: 1 MTAIPEPLDALTLPLQGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRE---TTDNPLYERLLEEID---DKAQAAQW 113 LV+TFT AAT EL RIR+ + E D+ RLL+ + AA Sbjct: 61 LVMTFTRAATRELAERIRARLVEAAQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAWR 120 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +A + MD+AAVFTI +CQRML +AF+SG F++ L+ DE L QA DFWR+ Y Sbjct: 121 LAMAAQAMDDAAVFTIDAWCQRMLREHAFDSGHSFDEDLLADEGELTTQAVHDFWRQQVY 180 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQI----VARI 229 PL V + W AL ++ L+ D++L ++ A++ Sbjct: 181 PLSGAALDGVLQVWPDVGALEGEVKSRLRAAQAGAPPVADKDDSLLDLWQRLGEPQQAQV 240 Query: 230 DTVKQQWRDAVGELDALI------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ-- 281 T+K QW + V + + E + + + K+ + W D + AW ++ Sbjct: 241 RTLKAQWAERVASMRQWLCALVQSEVNPLSKNKYGLKSVCGWFDALQAWLDDPAQQQPGL 300 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRET 338 ++ K + L G + +F ++ L A + DLV T A A++ Sbjct: 301 DDKAWAKLTPDGLRAGCNQGKQVEPPAVFNEVEMLRAALADLADLVPELQTYAAAQVDAR 360 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 + K G+ F D L RLD+AL GE L A I ++PVA+IDEFQDT Q+ +F Sbjct: 361 LRVLKAASGQFSFHDQLERLDAALAGPQGERLRARILEQYPVALIDEFQDTSALQFSVFD 420 Query: 399 RIW----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT-LDTNWRSAPGM 453 R++ +A+LLIGDPKQ+IYAFRGADI +Y++AR ++ L TN+RS + Sbjct: 421 RLYSITTAQTTHSAVLLIGDPKQSIYAFRGADIASYLRARQATQGRHSALQTNYRSTAEV 480 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----- 508 V+SVN+LF + + + + ++ + + F+ G A ++ EG Sbjct: 481 VHSVNQLFERREQSAGAGAFLYRDDEAPDADNPVPFIAVGARGRAEQLICSEGPVHALTC 540 Query: 509 ------CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 D + A AA+I L Q G +R SDI+VLVR Sbjct: 541 AVHQALESKRDARERFAAHSAARIVSLLNDTQVG--FRQADGGFARLRQSDIAVLVRDGD 598 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 EA +R AL + SVYLS+RDSVF + EA ++L L+AV P R+A A +G Sbjct: 599 EARAMRRALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLG 658 Query: 623 LNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 ++ L D+ +D + + IW ++GV+PMLR + ++ L+ GER Sbjct: 659 ATIAELAALATDDDVFDNRLALLAELQAIWLRQGVLPMLRQTLHRLDLPARWLSEEDGER 718 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 RLT++LH++ELLQ A L+ E AL+RWL + + + Q +RLES+ LV++VTIH Sbjct: 719 RLTNVLHLAELLQTASGALDGEQALIRWLQEQMA--GQSTEEQVVRLESEADLVRVVTIH 776 Query: 743 KSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 KSKGLEYPLV+LPF T F+ + + ERL EDLRLL Sbjct: 777 KSKGLEYPLVFLPFATAFKEAKDG----------------------ADDRERLREDLRLL 814 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVALTR+ +G+A L +G +H+SA+G LL P + A + + Sbjct: 815 YVALTRARHALWVGIAALKVGKGSVCM---LHRSAIGYLLGGDTPCEGAAIPGLLRETFG 871 Query: 863 DDIAWQT---AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR--GHGIA 917 D A Q AQ + Q Q + A + NW + S+S L + Sbjct: 872 DSPAVQIVDAAQEAELQRLQAAHPAQALIEPPNYHAQFERNWSIGSFSALVRDLTPRSTQ 931 Query: 918 QDLMPRLDVDAAGVASVVEE--------PTLTPHQFPRGASPGTFLHSLFEDLD-----F 964 Q + D E P+ H+FPRGA G F+H L Sbjct: 932 QPALQAALQDELWATEPSMEQPSPATLQPSAARHRFPRGALVGKFVHEQLAWLGENGFAL 991 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 + + + ++ G+++ L EW++ VL PL G +L ++ EMEF+ Sbjct: 992 SAQQTQDNLLQRCARQGWDAPRSADLLEWLSEVLATPLPPLGAALPEIDTL--LAEMEFW 1049 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 LP+ A+++D L +Q P L + GM+ GF DLVF H GRY++LDYKSN Sbjct: 1050 LPVDRA-RAAEIDALCQQHILPGRARPELTERTLHGMVMGFADLVFHHAGRYWVLDYKSN 1108 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLY-TLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 LG D + YTQQ + AA+ HRYD+Q LY YD + GG I LFL Sbjct: 1109 VLGTDDADYTQQVLEAAVLEHRYDVQCALYMLALHRLLRARLRTAYDPQTQLGGAIDLFL 1168 Query: 1144 RGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 RGV P+ G P+ L+ +D +FA Sbjct: 1169 RGVRG--PRSGCVHIPPDGVLLDALDALFA 1196 >UniRef50_B1XZ25 Exodeoxyribonuclease V, beta subunit n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZ25_LEPCP Length = 1272 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 433/1275 (33%), Positives = 598/1275 (46%), Gaps = 123/1275 (9%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG----SAAFPRPLTVEELLVV 62 L+PL LPL G LIEASAGTGKT+TIAALYLRL+LG G + PRPL E+LV+ Sbjct: 3 PLNPLTLPLHGSHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVM 62 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNP---LYERLLEEID---DKAQAAQWLLL 116 TFT AAT EL RIR + E E P L + ++ AA L L Sbjct: 63 TFTRAATRELSDRIRERLIEAARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLAL 122 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A MD+AAV TI +CQRML +AF+S LF+++L DE+ R QA D+WRR YPL Sbjct: 123 AAEGMDDAAVHTIDAWCQRMLREHAFDSAQLFDEELEADEAGRRRQAVQDYWRREVYPLR 182 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD--DETLASRHAQIVARIDTVKQ 234 + V W L + L + P + L AQ + +K Sbjct: 183 GAALETVLSLWPEVAELQSQVAGLLGKLDLLEGVPEGLGLRDWLGQIAAQRSQELAQLKA 242 Query: 235 QWRDAVGELDALIESSG------IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE- 287 W + + I + + +N + W D + AWA + Sbjct: 243 GWVERADFMQGWINQHRTCKPPVLAGARLKSNNVSDWFDALRAWAADPALETLDMGKTAP 302 Query: 288 -KFSQRFLEDRTKAGGETPRHPLFEAIDQL---LAEPLSIRDLVITRALAEIRETVAREK 343 + + + + G P F A QL L + + + + A + +A K Sbjct: 303 TRLTPEGIAECFNDGCAVPVPADFAAFAQLMFALGQRAPLHEPLQRHAAFGVARRLAALK 362 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-- 401 R+ G G+ D++ RLD+AL +GE LA IRT++P+A+IDEFQDT P QYR+F R++ Sbjct: 363 RQAGRFGYADLVERLDAALHGPAGERLAQRIRTQYPLALIDEFQDTSPLQYRLFDRLYDV 422 Query: 402 -HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE-VHAHYTLDTNWRSAPGMVNSVNK 459 ++ +T LLLIGDPKQ+IY FRGADI++Y+KAR Y L TN+RS +V +VN Sbjct: 423 AANRADTGLLLIGDPKQSIYGFRGADIYSYLKAREATAERRYMLTTNFRSTAALVAAVNT 482 Query: 460 LFSQTDDA----------FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 LF Q + A R +PF PV + G+ + L V G PA+++ + G + Sbjct: 483 LFEQAEAARPEGAFALGKDESRALPFDPVAARGRGEVL--VAGGAALPALQLAWLPG-AG 539 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 + +A AAQ+ WL G + R +R SD++VLVR + EAA +R Sbjct: 540 QAQVQRRELADHAAAQLVAWLADPTCGWS--EGDAPLRRLRPSDVAVLVRDQHEAAAIRR 597 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL + SVYLS++DSV+ + EA ++L L AV P R+A A + L ++ Sbjct: 598 ALQRRGVHSVYLSDKDSVYASAEAADLLRWLMAVAQPLDGLLARAAYANASWDLGLDELA 657 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA---TAGGERRLTD 686 +DE AWD + +W+++GV+ MLR + A ++ LA A GERRLT+ Sbjct: 658 AHVHDETAWDARLALLQQLHGVWQRQGVLTMLRQTLHALDLPARWLAEGNEAAGERRLTN 717 Query: 687 ILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ-----------------MRL 729 +LH+ ELLQ A LE E L+RWL+ + A +RL Sbjct: 718 VLHLGELLQAASAHLEGEAGLIRWLAAMVRGGGDGAQGGSGMGGSAAAAGAGGDAHIVRL 777 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR----VQEQAFYHDRHSFEAVLDLNAAPE 785 ESD LVQ+VT+HKSKGLEYP+V LPF + R + A LD PE Sbjct: 778 ESDAQLVQVVTVHKSKGLEYPVVMLPFANSARAWRKKRHGALEWVDDDGRRALDFAQQPE 837 Query: 786 SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG 845 V AE ERL EDLRL YVALTR+ LG+ R G SALG LL Sbjct: 838 HVAAAERERLREDLRLFYVALTRARHALWLGIGVPPTGRNGSAG----PLSALGYLLAGD 893 Query: 846 EPQDAAGLRTCIEALCDDDIAWQTAQ-----TGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 + L + ++ALCD T W+ + Q Sbjct: 894 QGLREDSLGSVLQALCDVSDPPATRSVCLDVPAQRVRWRDDRAQPPLHLPPVFQAEFERR 953 Query: 901 WRVTSYSGLQQ----RGHGIAQDLMPRLDVDAAGVASVVEE------------------- 937 W + S+SGL + RG G P D + EE Sbjct: 954 WAIGSFSGLVRDLGERGAGAGVPATPHGATDLLRTEQLQEELAQMAQLTQMAAQADGQPA 1013 Query: 938 ------------PTLTPHQFPRGASPGTFLHSLFEDL---DFTQPVDP---NWVREKLEL 979 T H FPRGA PG FLH + L F + + + + E Sbjct: 1014 APSGSRAAAIAGSVPTWHGFPRGALPGNFLHDQLQWLAEEGFERAGESGVAAALLRRCER 1073 Query: 980 GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 G + +W+ +L PL G SL+++ EMEF++P S L +++LD + Sbjct: 1074 AGHAQHAAGAV-DWLQQLLATPLPPLGASLAEVD--RLLPEMEFWMP-SVALRSAELDRI 1129 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 +Q P L Q+ G+L GF DLVF H GR+++LDYKSN LG + YT A++ Sbjct: 1130 CQQHLLPGQPRPALVSRQLDGLLMGFADLVFEHGGRWWVLDYKSNALGATDADYTPAALS 1189 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTT 1158 AM AHRY+LQ +Y LALHR LR R+ DYD GG +YLFLRG + P G Sbjct: 1190 QAMLAHRYELQAAIYLLALHRLLRSRLGDDYDPARQLGGALYLFLRGF--KGPAAGCVHL 1247 Query: 1159 RPNAGLIALMDEMFA 1173 + +D + Sbjct: 1248 SAEPAWLDALDAALS 1262 >UniRef50_B5EPU6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU6_ACIF5 Length = 1198 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 422/1207 (34%), Positives = 607/1207 (50%), Gaps = 83/1207 (6%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAA-FPRPLTVEEL 59 M+ + LDPL LPL G RLIEASAGTGKT+TIAALYLR++LG G FPRPL E++ Sbjct: 1 MTTI---LDPLHLPLHGSRLIEASAGTGKTWTIAALYLRMILGHGSEGEHFPRPLLPEDI 57 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRET---TDNPLYERLLEEIDD---KAQAAQW 113 LV+TFT AAT EL+ RIR + +P E LL + D +A+AA Sbjct: 58 LVMTFTRAATQELKERIRDRLQTAARYFRGTEHPAQPDPFLEALLADHPDPEVRARAAHQ 117 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L LA MD++A+FTI +CQR L +AF +G F + L+ DE+ LR A DFWR+ Y Sbjct: 118 LTLAADAMDDSAIFTIDAWCQRTLREHAFATGSDFRETLLLDETDLRDDAVRDFWRQEIY 177 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 PL V + + GP + ++ + + P+ + L A R+ T+K Sbjct: 178 PLGEPALDEVLQLFSGPDKIRQETAALCKLDPPLPAPASRLADWLPDALAAPRRRLATLK 237 Query: 234 QQWRDAVGELDALI--------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES 285 QW + + ++ + + ++ + + WA+ +P+ Sbjct: 238 AQWAAEHDAFAEWLSGLVNGPKADNPLNGNTLSAAIVSRALAALRDWADRSDPL--IPDE 295 Query: 286 LEK---FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL-------VITRALAEI 335 L+K S L + K HP E +D L E +I + T A A I Sbjct: 296 LDKCQRLSASKLPEYCKNKPPPVLHPAAETLDTLFRELETIAQQFTRLHGEIRTHAAAWI 355 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 ++R K + G++ F D RL L + G LAA +R ++P A+IDEFQDT QY Sbjct: 356 NARLSRLKAQSGQVSFADYQRRLARVLHDKTQGPALAARLRQKYPAALIDEFQDTSALQY 415 Query: 395 RIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSA 450 +IF I+H + P+T LLLIGDPKQ+IYAFRGADI +Y++AR HY L TN+RS+ Sbjct: 416 QIFDDIYHAADNNPDTLLLLIGDPKQSIYAFRGADIDSYLQARRLTEGRHYALGTNYRSS 475 Query: 451 PGMVNSVNKLFSQTD-----DAFMFRE------IPFIPVKSAGKNQALRFVFKGETQPAM 499 +V+++N +++ + AF + +P+ PV++ G + R G+ PA+ Sbjct: 476 HALVSALNAIYTAAEHDDPQGAFAYAAPGADNPLPYQPVQAHGHQKVWRI--HGKAAPAL 533 Query: 500 KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 W GE GDY A A I L + G A G+ R + A DI++LVR Sbjct: 534 TFW-GAGEKLNKGDYLERCAAQAAECIVGLLDNPEAGFA--QEGEITRRLEAKDIAILVR 590 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 R EAA +R AL ++ SV+LS +DSV+ + EA+E+L L+AV PE LR ALA Sbjct: 591 DRHEAASIRQALHHRQLRSVFLSEQDSVYASEEARELLLWLEAVAEPEDARRLRVALALP 650 Query: 620 MMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG 679 ++G ++ + +E AW+ +E+F + WR++GV+ ML + IA LL Sbjct: 651 LLGQPLSALDAFHQNETAWEAQLEQFQDLSRQWRRQGVLAMLHHSIHQFGIAARLLTQPE 710 Query: 680 GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 GERRLT++LH+ ELLQ+A ++ ALVR L Q I + + +RLESD L+++V Sbjct: 711 GERRLTNLLHLGELLQQASATIDGPEALVRHLHQAIAAGSDQSDAHILRLESDAGLLRVV 770 Query: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDL 799 TIH +KGL+YPLV+LPFI + + HS E ++ AE RL EDL Sbjct: 771 TIHAAKGLQYPLVFLPFIATCKAARANPFTVIHSAEGQPAIHWESGDTTAAERARLQEDL 830 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE- 858 RLLYVALTR+ LG+A G SA+ LL G + A L T +E Sbjct: 831 RLLYVALTRAEHALWLGLAA-----PKTAGTPIFAGSAIAHLL--GSERTARDLATLLED 883 Query: 859 -ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 A +I +T V + A +W V S+S L + Sbjct: 884 CARLSPEIVVETLPDSIPTTLFVRPRNNAHNPPPEYTASFEKHWGVASFSHLVRELPADP 943 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL---DFTQPVDPNWVR 974 A H++P+G + GTFLH + L F Q +V Sbjct: 944 AAPPTPRRAQA----------GAPWHRYPQGMNAGTFLHDQLQRLAQNGFAQIGQDQFV- 992 Query: 975 EKLELGGFES---QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 E+L ++ W EW+ A++ +PL +L LS + EM F+ P S+ L Sbjct: 993 EQLHKACTQAGLGDWVGETAEWLQAIVHSPLAPLTAALCDLS--DTLSEMAFWFP-SDAL 1049 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 + LD L +Q A P L + GM++GF+DLVF GRYY+LDYKSN LG + + Sbjct: 1050 RSDDLDRLCQQHIFPGADRPRLPQRVIHGMMRGFMDLVFEQGGRYYVLDYKSNVLGSEDA 1109 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEH 1150 Y +A+ A HRY+LQ LY LALHR LR R+ Y E H GG ++ FLRG+ + Sbjct: 1110 DYHAKALRDATLGHRYELQSSLYQLALHRLLRQRMGSRYRPETHLGGTLFFFLRGL--QG 1167 Query: 1151 PQQGIYT 1157 P++G+ Sbjct: 1168 PERGVLH 1174 >UniRef50_Q3B472 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pelodictyon RepID=Q3B472_PELLD Length = 1203 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 408/1224 (33%), Positives = 605/1224 (49%), Gaps = 76/1224 (6%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + L+ +PL G LIEASAGTGKT I +LYLRL++ L + +LVVT Sbjct: 1 MMRALEHASVPLSGMNLIEASAGTGKTHAIGSLYLRLVV--------EESLLPDSILVVT 52 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKA------QAAQWLLLA 117 +TEAA+ EL R I + L D ++ L EI A +AA+ L A Sbjct: 53 YTEAASGEL----RGRIRDRIRDTLHALRDPQCSQQALLEIGSAAVAVGVEEAARRLEGA 108 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 D AAV TIH FC R L +AFESG L++ L D+ L DFWR+ + Sbjct: 109 LGSFDTAAVHTIHAFCLRALQDHAFESGSLYDTALGADQHELLQGIVEDFWRQRFFSPES 168 Query: 178 EIAQVV-FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 ++ + ++ P++ R ++ G I+ P E A+ A+ W Sbjct: 169 PLSGYIGWKKDVTPESFTRLLSSLRPGPFTCIR-PDYPPEEPAAAEARCTEAYRAAAGMW 227 Query: 237 RDAVGELDALIES-SGIDRRK--FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRF 293 + + +++ +G+ R + + +++ A+ E + + E+F+ Sbjct: 228 KQERALIVSILNDDAGLSRAAGAYKKEELILLFERMDAYLES-GSVFDCFTGFERFTSAS 286 Query: 294 LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDD 353 L K E P H F+A + LL E ++ + + R + R K FDD Sbjct: 287 LRANMKKKYEAPVHRFFDAAEALLRELDLRLLVLKSELVRYYRSVLPRRKEELNVRLFDD 346 Query: 354 MLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIG 413 +L+ L AL +E G L +R+ +P A+IDEFQDTDP QY IFR I+ + L LIG Sbjct: 347 LLTDLYLALEAEGGGRLGEVLRSSYPAALIDEFQDTDPVQYEIFRMIYAGS-DLPLFLIG 405 Query: 414 DPKQAIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 DPKQAIY+FRGAD+F Y+KA + + +TL+ NWRSAP ++ N LF + + F++ Sbjct: 406 DPKQAIYSFRGADLFAYLKAAASVDGDCRFTLEKNWRSAPLLLEGFNTLFLKGPNPFLYP 465 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQP-AMKMWLMEGESCGVG-----DYQSTMAQVCAAQ 525 I + PV S G F + + P +++WL++ G + A A + Sbjct: 466 GIAYRPVSSGGGGPRDPFTHEDDRHPEPLQLWLLDARDAKNGCLTVEAAEEMAAAAVAGE 525 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 I L + G+A + + P+ ASD++V+VR+ +AA+V AL +P+V S+R Sbjct: 526 IVRLLGDARAGKARIGD----VPLAASDMAVIVRTHLQAAKVHAALRARGVPAVMQSDR- 580 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 SVF + A E+L LL+A++ P E +RSAL T+++G I L+ D W + +F Sbjct: 581 SVFLSPVAGEVLLLLEALLHPSSEGRIRSALVTTILGRTGNVIAALSADGEEWIACLRDF 640 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESE 704 + Q+WR +G M M RA M + +LA GG+R LTDILH ELL + T Sbjct: 641 AQWNQLWRTQGFMAMTRAFMRKEGVRRRVLAREGGQRTLTDILHCFELLHQHEHTSNAGP 700 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV-- 762 AL+ W S+ L+ + + QMRLE+D+ V+IVT+H SKGL+YPLV+ P++ Sbjct: 701 EALLAWFSERCLDTTGSEDAYQMRLETDEAAVKIVTVHVSKGLQYPLVFCPYLWKGSTST 760 Query: 763 QEQAFYHDRHSFEAVLDLNA--APESVDLAEAERLAEDLRLLYVALTRSVWHCSL----- 815 +E A +HD S EAV D + P+ + A E +AEDLRL YVALTR+ C Sbjct: 761 KEVAAFHDA-SGEAVRDFGSPGFPDGMLRAGEEAMAEDLRLFYVALTRAEHRCCFISARV 819 Query: 816 --GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD---IAWQTA 870 GV+ L + + A RLL+ E + + AL ++ + ++ Sbjct: 820 SGGVSALNYLLHAGESVQERVAGAPERLLEAMEASSPLRMEADLRALAEESRGAVGFRLL 879 Query: 871 QTGDNQPWQVNDVSTAELNA-----KTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD 925 D + A + +WRV+S++ ++GH + +P D Sbjct: 880 TQDDLLRAALPAPKDDGSGAIGQNLRRFSGRIDSSWRVSSFTSFSRQGHRPQE--LPDRD 937 Query: 926 VDAAG---VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP---VDPNWVREKLEL 979 A+G +V E FPRGA G F+H +FE +DF+ P V L+ Sbjct: 938 ETASGSLPQDTVSTEDAEGIFAFPRGAKAGLFMHEIFEHIDFSAPDPLAIRKLVDTSLQR 997 Query: 980 GGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 G+E +W +T + VLQ PL E L L + E+EF++P+S L L Sbjct: 998 YGYEPKWSDAVTGMVEGVLQMPLGEGEDPFRLGALQPGSWVSELEFFMPMS-LLQTEALQ 1056 Query: 1038 TLIRQFDPLSAGCP------PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 +R+ + G LEF GML GF+D+VF GR++LLD+KSN LG +S Sbjct: 1057 NPLRRHGLMPEGADYRKLADSLEFQPATGMLLGFMDMVFEAGGRFWLLDWKSNHLGNRAS 1116 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 Y Q M AAM+ HRY LQY Y AL+R+L R+ Y Y HFGGV+Y+FLRGVD + Sbjct: 1117 DYAQDGMEAAMEEHRYHLQYLFYLSALNRHLTLRVPGYTYRTHFGGVLYVFLRGVDGKGR 1176 Query: 1152 QQGIYTTRPNAGLIALMDEMFAGM 1175 G+Y RP AGLI + AG Sbjct: 1177 GTGLYRVRPPAGLIEELTLAIAGE 1200 >UniRef50_C1D6T6 RecB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T6_LARHH Length = 1216 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 459/1230 (37%), Positives = 628/1230 (51%), Gaps = 73/1230 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLG----LGGSAAFPRPLTV 56 MS++ + LDP R PL G RLIEASAGTGKTFTIAALYLRL+LG G A L Sbjct: 1 MSNLMQALDPRRFPLHGLRLIEASAGTGKTFTIAALYLRLVLGARSEDDGLAFNAGGLLP 60 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEID--DKAQAAQWL 114 ++LVVTFTEAAT ELR RIRS + E A + +D+ LL++ + + A L Sbjct: 61 PQILVVTFTEAATEELRERIRSRLVEAARAFRQNDSDDAFLRGLLDDYPAGQRGRHAHQL 120 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA + MDEAA+FTIH +CQ+ML +AF+SG LFE + DES LR QA D+WRRH YP Sbjct: 121 ELAAQWMDEAAIFTIHAYCQKMLRTHAFDSGSLFELTVNTDESALREQAVNDYWRRHFYP 180 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 LPR + P L R L P + LA+R A+ A +Q Sbjct: 181 LPRARLLPLQAIAASPAELGRLALPLLGRLPAGPADWTPVEAILAARRAEKAA---WRQQ 237 Query: 235 QWRDAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL-----EK 288 W + + L L E+ ++ K + KW+D ++ W +++ L + Sbjct: 238 GWLEELARTLTGLRENKTVNGNKVRADSCQKWLDDLADWLARDSDDLPLAGKPFETARWR 297 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPL---SIRDLVITRALAEIRETVAREKRR 345 + + D KAG F A+++LL L S+R ++T A I +A EK R Sbjct: 298 LTPAGILDALKAGMSFDPPEPFFAVERLLQPALADTSLRAALLTHATRSIAAALAAEKSR 357 Query: 346 RGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-- 401 R E+GFDDM+ L AL +S E LA A+R +PVA+IDEFQDTDP QY IFR ++ Sbjct: 358 RAEIGFDDMIRGLAQALAPDSPNRERLAQALRQAYPVALIDEFQDTDPAQYAIFRTLYAD 417 Query: 402 -HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVN 458 + LL+IGDPKQAIYAFRGADIFTY+ AR + YTLDTNWRS MV VN Sbjct: 418 AGPEARLGLLMIGDPKQAIYAFRGADIFTYLAARHDTRPEQRYTLDTNWRSTTAMVGVVN 477 Query: 459 KLFSQTDDA-------FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 +LF + +A F +IPF V++AG+++ R V G P + + + E+ Sbjct: 478 QLFCGSPEAGTVSETVFGRPDIPFQAVRAAGRSE--RLVQGGMPVPPLTLAWRQ-EAGNK 534 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 DY+ A+ A I L + G LL + P+ DI+VLVR QEAA +R AL Sbjct: 535 DDYRQEFARRAAEAITTLLNDSEAG--LLADDGGFEPLAPRDIAVLVRDWQEAAAIRRAL 592 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 L + SVYLS++DSVF + EAQ+++ L AV+ E LR ALAT+ +GL+ ++ L Sbjct: 593 DLCSVRSVYLSDKDSVFASQEAQDLVRWLDAVLYAEDNARLRLALATATLGLDYAGLDRL 652 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT--AGGERRLTDILH 689 NDE W+ E F YRQ WR++GV+PML AL+ + LLA GGER+LT++LH Sbjct: 653 FNDEREWERTSERFRSYRQTWRQQGVLPMLLALLHDYRLPARLLARRDEGGERQLTNLLH 712 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 ++E LQ ++ E ++R L + +PD+ S +RLES+ V++VT+HKSKGLEY Sbjct: 713 LAERLQADAAGIDGEVGVLRHLERLTEQPDAAQESV-LRLESEDARVRVVTLHKSKGLEY 771 Query: 750 PLVWLPFITNFRV----QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 805 PLV+LPF+ R + F+HD V + + + E ED+RLLYVA Sbjct: 772 PLVFLPFLAGGRALPDGRNGIFWHDGDGRLHVDLTGQDADGLAAMQRESAQEDMRLLYVA 831 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI 865 LTR+ +G++PL + SA+GRLLQ R A DI Sbjct: 832 LTRARHALWIGLSPL------SGTGDLLAGSAIGRLLQLDSDPGRLAGRLHALAQAGSDI 885 Query: 866 AWQTAQTGDNQPWQVNDVSTAEL-NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP-- 922 D P + L A+ L R WR+ SYS L Sbjct: 886 RLDDTPPADPPPRYCDSTPAPVLFPARRLTRRIARRWRIASYSALLTGPAQAGPPAAEDS 945 Query: 923 ----RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL---DFTQPVD-----P 970 R+D A + V+ T F RG G FLH LFE F + + Sbjct: 946 AAANRIDDTAMPDSPVLPIAGRTLAGFWRGPQAGIFLHGLFEWAAQQGFGRTCELAAERR 1005 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPL---NETGVSLSQLSARNKQVEMEFYLPI 1027 + + + + + W W+ VL PL + + V+L+ L R+ + E EF+L Sbjct: 1006 DLLARRCQRREL-AGWIDFFDGWLPWVLTRPLPLNDASPVTLAALPPRSARAETEFWLGN 1064 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 + L + LD + P L ++G+ KGFIDLVF HEGR+Y+LDYKSNWLG Sbjct: 1065 PQ-LATTALDAAVSVAVWPGHARPALLPQSLQGLFKGFIDLVFEHEGRFYVLDYKSNWLG 1123 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQ-YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 + +Y A+ M AHRY+LQ ADYD GG + FLRG Sbjct: 1124 DTPGSYHPDALRDEMLAHRYELQGMLYLLALHRLLRARLGADYDPATRLGGFVCWFLRGT 1183 Query: 1147 DKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 D P GI + L+ +D +FA T Sbjct: 1184 DG--PGAGIVHLPADLALLDRLDHLFACET 1211 >UniRef50_D0KVH3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVH3_HALNC Length = 1259 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 417/1259 (33%), Positives = 609/1259 (48%), Gaps = 111/1259 (8%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S++ L+PL P G RLIEASAGTGKTFTIA LY+RL+LG G PL ++LV Sbjct: 6 SNMPLPLNPLTFPFAGSRLIEASAGTGKTFTIALLYVRLVLGHGTE-----PLMPPQILV 60 Query: 62 VTFTEAATAELRGRIRSNIHEL-RIACLRETTDNPL--------YERLLEEIDDKAQAAQ 112 TFT+AA ELR RIR+ + E RI + +P+ +++ AA+ Sbjct: 61 TTFTDAAADELRDRIRARLFEAYRIFSEAGSELDPIAVDPYLLDLRAAFPTSEERLAAAR 120 Query: 113 WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHC 172 L +A MDEAA+FTIHG+CQRMLN +AF S LFEQ + + + QA D+WR + Sbjct: 121 RLEMAANWMDEAAIFTIHGWCQRMLNEHAFHSRALFEQTVRTSLTPVVDQAVQDYWRHYI 180 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 Y LP A V GP AL + +N L + + + A +VA I + Sbjct: 181 YALPPAQALSVANLLGGPSALTQKLNGLLSRDGAPLFVDGKPVDPAALDFFAMVADIAEL 240 Query: 233 -----------KQQWRDAVGELDALI-----ESSGIDRRKFNR-SNQAKWIDKISAWAEE 275 +Q W L SG R ++ ++ + D + WA+ Sbjct: 241 DTQAQQAEQDARQAWSKHAETLKDAWLPIMSALSGTSHRTLSKLTDFSTLWDSLDLWAQT 300 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD-------LVI 328 LP + KF + + E P HP + R ++ Sbjct: 301 GE---PLPIDVFKF---LTQPKFNKKLERPFHPALAVFSAWPVAMEAARHGREQSAIRLL 354 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQD 388 A +R+ + ++ E+GFDD+L LD AL G+ LA IRT+FPVAMIDEFQD Sbjct: 355 AHAAFWVRDRIDTVLQQNAEMGFDDILLNLDRALTGAEGQQLADTIRTQFPVAMIDEFQD 414 Query: 389 TDPQQYRIFRRIWH-------HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AH 440 TDP QYRIF R++ ++LIGDPKQ+IY FRGAD+F+Y+ AR H Sbjct: 415 TDPLQYRIFDRVFRIGGNGEAAGQAGTMILIGDPKQSIYRFRGADMFSYLAAREATQGRH 474 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTD----DAFMFRE-----IPFIPVKSAGKNQAL-RFV 490 YTLD N+RS P +V +VN +F + D AF + +PFI V + GK + L R Sbjct: 475 YTLDANYRSTPELVAAVNYVFERADRQPSGAFGHKTDEGNPLPFIRVSARGKARRLQRRN 534 Query: 491 FKGETQP--AMKMWLMEGESC-GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA- 546 GE QP + W + +S G + MA+ A I L A Q G+ + + A Sbjct: 535 EAGEWQPCPPLTGWALPRDSLLAAGHFVEQMAEHTAEAITSSLNAAQVGDCAFFDAEGAM 594 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 +R DI++LV + +AA ++ +L I SVYLS+R +F T EA + L A+ P Sbjct: 595 TALRPQDIAILVSTGDQAAVLQQSLIRRGIKSVYLSDRHRLFATEEAADFHRWLLAIAEP 654 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 +R++ LR+AL +S + +++ + ND D F Y++I R +G++ + LM Sbjct: 655 QRQDRLRAALGSSSFARHWGELDAVRNDAR-LDEDTSRFMAYQRITRHQGILAAVYQLMH 713 Query: 667 ARNIAENLLATA----GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 +I LLA GERRLT++LH+++ Q QL AL L ++ N Sbjct: 714 DYHIPARLLAAPLPDRSGERRLTNLLHLADWAQNEQAQLAGLDAL---LQRYAQAVSDNE 770 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD----RHSFEAVL 778 + ++RLE D+HLV+I+TIH +KGL+YP+V+LPF+ R +E R S + Sbjct: 771 AEHELRLEQDEHLVRIITIHSAKGLQYPVVYLPFLPLIRPKEANKNSTATPWRTSTGRGM 830 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 L PE++ ++ E +RL+YVALTR+ C+L + P+ G + H+S L Sbjct: 831 SLGEFPEAIAAEHEAQMTESVRLIYVALTRAESACTLALGPVKFGAGKQPNQ---HESGL 887 Query: 839 GRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP 897 G +L+ +G + A + L V V + A+T +R Sbjct: 888 GHVLRLQGNDEFIASFEAALTDLDAQAGVTIEPPPSITHARFVAPVEDSLPPARTAKRRV 947 Query: 898 GDNWRVTSYSGLQQRGHGIA----QDLMPRLDVDAAGVASVVEEPTLTP----------- 942 +WR++S+SGL H + D VEE P Sbjct: 948 DSHWRISSFSGLTHALHESDVAVPETAKQEQLRDVLSQTGTVEESLDLPQTHRFDPQSLS 1007 Query: 943 ---HQFPRGASPGTFLHSLFEDLD---FTQPVDPNWVREKLELGG--FESQWEPVLTEWI 994 PRG + GT LHSL E F Q + + + + L E + Sbjct: 1008 ARISHLPRGTTFGTLLHSLLERAGEAGFNQSANFEFSLNLVRQLASTLTEDQQSTLAELV 1067 Query: 995 TAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 +L L L+ +S Q+E EF+LP+++ +S +D L+ P L Sbjct: 1068 LRILTLSLVTTPSRRLADVS--RYQIEQEFWLPVAQTQTSS-IDALLCAHVHPGQMRPLL 1124 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 + G +KGF+DLVF +GR+Y+LDYKSNWLG+ Y + + AM A RYDLQ L Sbjct: 1125 TAQYLEGQIKGFMDLVFEADGRFYILDYKSNWLGDSPEDYAPEHLVDAMLAARYDLQMVL 1184 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 Y ALHR+L+ R+ +YD H GG +YLF+RG+D P QG+Y + N +IA MD + Sbjct: 1185 YLTALHRHLQDRLPNYDPAVHLGGALYLFVRGIDS--PGQGVYFSPANPTVIAAMDALL 1241 >UniRef50_B3ECZ4 Exodeoxyribonuclease V, beta subunit n=5 Tax=Chlorobiaceae RepID=B3ECZ4_CHLL2 Length = 1226 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 399/1241 (32%), Positives = 605/1241 (48%), Gaps = 108/1241 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD +PL G LIEASAGTGKT+ I + L + L E++LVVT+TEA Sbjct: 6 LDHSTVPLSGMNLIEASAGTGKTWAITS--------LYLRLLLEKELRPEQILVVTYTEA 57 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERL---LEEIDDKAQAAQWLLLAERQMDEA 124 AT EL RIR I + A + TD+P L + ++ +AA L A + D A Sbjct: 58 ATRELHARIRRRIRQALDAMRGDPTDDPFLIDLCDRAAQAGEEERAALLLEAALAEFDTA 117 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIHGFC R L +AFESG L++ +++ D+S L + DFWR + + Sbjct: 118 AIFTIHGFCNRALQDHAFESGALYDTEIVTDQSALAREVIDDFWRERFFGSADRLLGYAL 177 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 P A + + + LQ P + +A + A D V++ W + + Sbjct: 178 LKGWSPDAFMAFL-KSLQLSGRDEVIPVYGEAEIARIGHEAEAAFDEVRRIWSEEKEPVS 236 Query: 245 ALIES-SGIDR--RKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 AL+ + G+ R + + + + + + N + L + +K + + TK+ Sbjct: 237 ALLRTGKGLSRSEKAYRADRVEQLLSDMEVFVAA-GNPFGLFDGFDKLTASGIASGTKSS 295 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 G P HPLF+ ++L A + + +A R+ + K+ R FDD+L+ L A Sbjct: 296 GTAPSHPLFDTCERLQAAADERLQALKSEVVAFYRKRLPERKKERNIRFFDDLLADLYQA 355 Query: 362 LRSE------SGEVLAAAI--------------RTRFPVAMIDEFQDTDPQQYRIFRRIW 401 L+ G + A+AI R R+ A+IDEFQDTDP QY IFRRI+ Sbjct: 356 LQGGCEIAATPGGLEASAIIEIGLEAAALAEALRNRYRAALIDEFQDTDPVQYDIFRRIY 415 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH--YTLDTNWRSAPGMVNSVNK 459 E L LIGDPKQAIY+FRGADIF Y++A S+V +TL+TNWRS P +++ N Sbjct: 416 AGS-EAPLFLIGDPKQAIYSFRGADIFAYLQAASDVGRERSFTLNTNWRSVPKLLDGFNL 474 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV---GDYQS 516 LF F+F IP P+ + + L + P L G+ G G+ + Sbjct: 475 LFDSARHPFVFDNIPSPPLVAG---KELPRDAESPVPPLEICLLRSGDGDGSLKSGESER 531 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 A CA+ + + + G A DI+V+VR+ ++A ++ AL I Sbjct: 532 FAAGACASMVTETINGGSD---------------AGDIAVIVRTHRQARMMQTALRECGI 576 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 SV S+ +SVF ++EA+E+ L+ A+ P RE+ +R+AL T + GLN DI LN+DE+ Sbjct: 577 VSVMRSD-ESVFASVEAEEVRILVTALAEPGRESLVRAALVTPLFGLNGSDIARLNDDEN 635 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG--GERRLTDILHISELL 694 AW +++F Y ++W++ G M M+R LM + E LLA +G GER LT++LH ELL Sbjct: 636 AWVERLQQFREYHRLWQECGFMVMVRELMRREAVRERLLALSGSSGERALTNVLHCFELL 695 Query: 695 Q-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 EA ++ LV W + + + Q+RLESD+ V+IVT H SKGL+YP+V+ Sbjct: 696 HREAHSRGLGMEGLVTWFGERVAAKEPG-EEYQIRLESDEPAVRIVTAHVSKGLQYPIVF 754 Query: 754 LPF--ITNFRVQEQAFYHDRHS-FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 PF + +HD + A LA E LAE+LRL YVALTR+ Sbjct: 755 CPFQFGGGNGSGDVVLFHDDDGRMKRDFGSRAIERHRALASREFLAENLRLFYVALTRAE 814 Query: 811 WHCSLGVAPLVRRRGDKK--------------GDTDVHQSALGRLLQKGEPQDAAGLRTC 856 C A +V R + + +G Q+ DA + Sbjct: 815 RRCIFFTARIVDARQSGRTPMLSPSSYLLYVSDEASQSPRLIGEAQQELAALDAGTMAER 874 Query: 857 IEALCDDD---IAWQTAQTGDNQPWQVNDVSTAE---LNAKTLQRLPGDNWRVTSYSGLQ 910 ++ + D+ I + D+ + + A+ + +WR+ S++ L Sbjct: 875 LQNISDESGGAIRLRRLSLDDDLTVPLIRTAAADSPSFALREFTASLETDWRIASFTTLS 934 Query: 911 QRGH---GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP 967 + H + + AA +V+ + + FP+GA G +HS+FE LDF Sbjct: 935 RHHHMAFELPDRDESTPEQQAAAAPAVLPDTDRSIFAFPKGAGAGILMHSIFETLDFANA 994 Query: 968 VD-------PNWVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQ 1018 +D L+ G+E W+P LT + VL+ L+ E +L L + Sbjct: 995 IDDTSESHIEEASIRALDRYGYERHWQPCLTGMVQQVLRTELSSQEGNFTLGGLRQGSWS 1054 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP------LEFMQVRGMLKGFIDLVFRH 1072 E+EF+ P+ + + +L L+ + + G P L+F V+GML GF+D+VF Sbjct: 1055 TELEFFFPLRH-VTSPRLSELLMRHGVIPNGADPAAALQALDFTPVKGMLMGFMDMVFEA 1113 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +GRYYLLD+KSN LG AY ++ + AMQ + Y LQY LYT+AL R+L R+ Y Y+ Sbjct: 1114 KGRYYLLDWKSNHLGNAVEAYHRERLGKAMQENLYRLQYLLYTVALDRFLSLRVPGYRYD 1173 Query: 1133 HHFGGVIYLFLRGVDKEHPQQ-GIYTTRPNAGLIALMDEMF 1172 HFGG IY+FLRGV E ++ G Y P+ LI + E+ Sbjct: 1174 THFGGAIYVFLRGVSVERGEEYGFYRDLPSEALIRELQELL 1214 >UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=Proteobacteria RepID=Q1BXL0_BURCA Length = 2007 Score = 843 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 417/1261 (33%), Positives = 595/1261 (47%), Gaps = 114/1261 (9%) Query: 1 MSDVAE----TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTV 56 MS V++ LD PL G IEASAGTGKT+ I ALY+RLLL + L Sbjct: 1 MSAVSQQQALELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLL--------EKDLGA 52 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIAC-LRETTDNPLYERLLEE------IDDKAQ 109 +E+LVVTFT+AATAEL RIRS + +L A + +P RLLE D Sbjct: 53 DEILVVTFTKAATAELHERIRSRLAQLAHALDTGDDGGDPFIARLLETTLGDDGALDSGT 112 Query: 110 AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 AA+ + A R D+AA+ TIH FCQR L F + M F + D++ LR++ ADFWR Sbjct: 113 AAKRIRRALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDASLRFELAADFWR 172 Query: 170 RHCYPLPRE---IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIV 226 P A + E+ GP AL + R L+ ++ E S A Sbjct: 173 TRVEPAAARWPGFATWLVESGAGPAALDAQLARRLKKPLAALRW-DGVTEPDESAEAAAA 231 Query: 227 ARIDTVKQQWRDAVGELDALIESSG--IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPE 284 + W +DAL+ ++ +++R A + + E+ + LP+ Sbjct: 232 ECFAEAARMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPK 291 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE------- 337 + K +Q L TK GG TP H F+ D L A + R LA I E Sbjct: 292 AALKLTQTALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPG 351 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 +A KR R + FDD+L+ L AL + LA +R R+P A+IDEFQDTDP Q+ IF Sbjct: 352 ELAERKRTRRVVSFDDLLANLYHALHAHP--WLAETLRARYPAALIDEFQDTDPLQFAIF 409 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 RI+ P L L+GDPKQAIY+FR AD+ TY+ AR+ A YTL N RS P +V++ Sbjct: 410 DRIF--APRGPLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAVNQRSTPAIVDAC 467 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA--MKMWLMEGESCG--VGD 513 N+ F AF+ + + V++ + +A FV + + PA ++W + G D Sbjct: 468 NRFFLSNPRAFVLDGLDYYAVRAGTRVRA-PFVDETDPGPAGDFRVWALPGGEGTLLKRD 526 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 Q+ AQ CAA+I ++ + G L P+ DI+VLV++ ++ + V+ L Sbjct: 527 AQAQAAQACAAEIARLMRGAREGRVRLGES----PLSPGDIAVLVQTHRQGSLVKRVLAT 582 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 I SV L+ SVF T +A+++ +L A+ P LR+ALA+ GL+A + + Sbjct: 583 WGIGSVELAQA-SVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGALWRMEQ 641 Query: 634 DEHAWDV------------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 + VE F YR +WR+RG M R IAE L+A A GE Sbjct: 642 GDGDAPPGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLMAGADGE 701 Query: 682 RRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 RR+TDI H++EL Q + +RWL+ L D Q+RLESD++LVQIVT+ Sbjct: 702 RRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL--DGGGEEAQLRLESDRNLVQIVTV 759 Query: 742 HKSKGLEYPLVWLPFITNFRVQE-------QAFYHDRHSFEAVLDLNAAPESVDLAE--- 791 HKSKGLEY +V+ PF+ + ++E A + + +AVL E+ A Sbjct: 760 HKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHDDAGDAVLHYGCDDEAAAHAARQA 819 Query: 792 -AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG-----RLLQKG 845 E+ AE RL+YVALTR+V+ C + P + R ++ V + Sbjct: 820 LREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFDAWLD 879 Query: 846 EPQDAAGLRTCIEALCDDDIAWQTAQ-TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT 904 EP D A L AL ++ + ++ L A+ R+ D WR+ Sbjct: 880 EPPDEAALEAAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDAWRLA 939 Query: 905 SYSGLQ------QRGHGIAQDLMPRLDVDAAGVASVV-----------EEPTLTPHQFPR 947 S+S L + G D R D DA + + P FPR Sbjct: 940 SFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDILVFPR 999 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKL-ELGGFESQWEPVLT--------EWITAVL 998 GA+ G LH LFE FT+P +W L L + EP L + V+ Sbjct: 1000 GAAAGECLHRLFELSRFTEP--ESWHAAALGALHDRPVEAEPALAARLPAMMVRLVDDVV 1057 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 L G+ L L + EM F P + + L+ P A LE + Sbjct: 1058 HTEL-VPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVA----LEAGTL 1112 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 G +KGFID++ H+GR++++D+KSN LG AY +A+ AM H Y LQ LYT+AL Sbjct: 1113 AGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLYTVAL 1172 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLFLRGVDK----EHPQQGIYTTRPNAGLIALMDEMFAG 1174 HRYLR R+ DYDY+ H G +YLF+RGV G++ RP L+ +D M G Sbjct: 1173 HRYLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDRMMEG 1232 Query: 1175 M 1175 Sbjct: 1233 G 1233 >UniRef50_Q6ANK1 Related to exodeoxyribonuclease V, beta chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK1_DESPS Length = 1191 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 380/1224 (31%), Positives = 594/1224 (48%), Gaps = 84/1224 (6%) Query: 1 MSDVAETLDPLRLPL------QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPL 54 MS A T DP+ + +G IEASAGTGKT+ I L LR + + + Sbjct: 1 MSYKAGTPDPIIFDVAKTPMERGVNFIEASAGTGKTYAIGMLVLRAI--------CEQDI 52 Query: 55 TVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQ-- 112 ++ +L+VTFT AA ELR R+R+ + E R D L + D+ A + Sbjct: 53 GIDRILIVTFTRAAAEELRSRVRARLVEARDLLQGRHEDASLRAWQEHAVKDEGVARRFI 112 Query: 113 -WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 L LA +D A +FTIH FCQRML+ A ESG LF L+ LR +A DFWR H Sbjct: 113 SRLQLAIVNIDRAGIFTIHSFCQRMLSEQALESGQLFRMDLLTSLDDLRLRAAEDFWRIH 172 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 Y L +V W P LL + +L G+ + P+ E ++ + I Sbjct: 173 VYSLSPWSCSLVMGQWSSPADLLANAFVHLHGDTRI----EPEVEDISLLWQNLEGAIAR 228 Query: 232 VKQQWRDAVGEL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEE-TNSYQLPESLEKF 289 +K+ W + L +AL E+ G D KF ++ A + A + + + P +L Sbjct: 229 MKEWWLGSGTALQEALAEACGED--KFKKAFVADFAGSFRACEKFFLGQAEKFPANLSWL 286 Query: 290 SQRFLE-----DRTKAGGETPRHPLFE-------AIDQLLAEPLSIRDLVITRALAEIRE 337 + L+ ++ + + P A +LL + E+ Sbjct: 287 TVAGLKVEINGNKFRGKKKDEIDPFLNSMGLPEMAATELLELKKQLFIGYRIFFAGELER 346 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 V R+ + G + FD ++SRL + L E L A++ R+ +A+IDEFQDTD +Q+ IF Sbjct: 347 GVGRQLQEHGSISFDQLISRLAAGLCGEE-THLQTALQARYDLALIDEFQDTDNEQWHIF 405 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 +++ + +L LIGDPKQAIY FRGADI++Y AR++ Y+LDTN+RS +V V Sbjct: 406 SKLFASKKH-SLYLIGDPKQAIYKFRGADIYSYFTARTKTDYFYSLDTNYRSHRDLVRGV 464 Query: 458 NKLFSQTDDAFMFRE--IPFIPVKSA-GKNQALRFVFKGETQPAMKMWLMEGESCGVGDY 514 N LF+ +DD F+F+E + + PVKS ++ L K P + + L E + G + Sbjct: 465 NGLFAGSDDPFLFKEEGLLYYPVKSGKSRDVYLVDAEKKPLVPFVYLQLEENDDDKKGKW 524 Query: 515 QSTMAQV-----CAAQIRDWLQAGQRGEALLMNGDD---ARPVRASDISVLVRSRQEAAQ 566 S +A+ A+ L + +N D +P+R DI+VLVRS +A Sbjct: 525 SSALARTAIRGDIVAETLHLLSISEPTSIHKLNRDGQSIYQPLRPQDIAVLVRSNSQAEA 584 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 + A + +P++ ++ R ++FET E+ E+L LLQA++ + L++A+ S+ Sbjct: 585 YQQAFLQVGVPAI-IAGRKTIFETDESHELLLLLQAIIDHDDLRLLKTAMTISLFACTGD 643 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 DI + DE A F +W +RGV+ ML L+ ++ + NL+ + ERR+ + Sbjct: 644 DIMAIWQDEQAVAEWYNVFLQCYHLWSERGVLTMLYFLVDSKELFANLVQFSQPERRIAN 703 Query: 687 ILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 H+ E+LQ+A T + WL + N + ++RLESD+ +QIVT+H SK Sbjct: 704 FTHLFEVLQQAETAANLGPRQSLLWLRSALTGKQKN-DAFELRLESDEEALQIVTMHSSK 762 Query: 746 GLEYPLVWLPFITNF--RVQEQAFYHDRHSFEAVLDLNAAP--ESVDLAEAERLAEDLRL 801 GL+YP+V+ P + R++ + H AV+D + E + A E LAEDLRL Sbjct: 763 GLQYPVVFCPDLYGRSARIKNEKNVISCHDGGAVIDFGSEHFSERRERACREELAEDLRL 822 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC 861 YVALTR+ A + R + SALG LL G+ D + ++ L Sbjct: 823 AYVALTRAELRSYTYWADISARGAGVDASLN---SALGHLLFAGDDIDYEEQQERLKVLA 879 Query: 862 DDDIAWQTAQTGDNQP---WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ 918 + A + + + + RL +W++TSYS L G Sbjct: 880 RESGALFQHVSAEPATCSSYGAERRVKSLATRPHRPRLLATDWQMTSYSALASLGDH--- 936 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV-------DPN 971 P + D ++ + P + + P+GA G +H L E F V Sbjct: 937 --APVVQFDRD---ALADAPRIAFAELPKGARFGNAVHDLLEKCAFADLVLHADDLHVQG 991 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + +K E G + + + T+ PL G SL+ LS EMEFYL ++ + Sbjct: 992 MMEQKCEEYGLQLD-QELFTQLFVQACSTPLFAGGFSLADLSRSRCLKEMEFYLRLAH-I 1049 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 ++++T++ + ++RG + GFIDLV +HEG+YY++DYKSN+LGE S Sbjct: 1050 NLAEINTILAD----EPTVQAISAKKMRGYMTGFIDLVCQHEGKYYVVDYKSNYLGELQS 1105 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 Y+ ++ M AH Y LQY +Y+L LH++L+ + Y YE HFGGV+YLF+RG+D + Sbjct: 1106 DYSGDSLVQVMAAHNYGLQYYIYSLVLHQHLQTFVEGYSYEEHFGGVMYLFVRGMDPDIA 1165 Query: 1152 QQGIYTTRPNAGLIALMDEMFAGM 1175 G++ TRP GLI +D + G Sbjct: 1166 GSGVFATRPARGLIEALDRLIGGG 1189 >UniRef50_Q1NY14 Exodeoxyribonuclease V, beta subunit n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NY14_9DELT Length = 1239 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 397/1256 (31%), Positives = 582/1256 (46%), Gaps = 109/1256 (8%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 DP LP +LIEASAGTGKT++I ALYLR +L R L VE++LV++F Sbjct: 3 PFPFDPATLPAAPVQLIEASAGTGKTWSITALYLRFIL--------ERQLPVEKILVLSF 54 Query: 65 TEAATAELRGRIRSNIHELRIACLR-----ETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 TEAATAEL R+R+ + A R + +P L + AQ L A Sbjct: 55 TEAATAELHERLRARLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALA 114 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 +D+AAV TIHGFC RML AFESGM FE +L+ + Q D+ + + Sbjct: 115 SIDQAAVLTIHGFCHRMLQQGAFESGMPFELELLAELDHYFQQLIHDYLNTVFHRDDPRL 174 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 ++ + + PV+ LA +A ++ W+ Sbjct: 175 LSLLRQQGWQQWQQWARLAAS-HRHLPVVDDDEQGA-VLAQLWEATLAAYGKARENWQQE 232 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED--- 296 + L+ + ++ + A E S +P E L D Sbjct: 233 WEAIGELLRQTEFQQKTRQQMAAGLLNRLADHLAGPEPASLVVPTGSEDLIPEKLADPKA 292 Query: 297 -----RTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRR----G 347 + G PRHP FE L S+ + LA + TV RE +R G Sbjct: 293 KICMAKNIKAGNWPRHPFFEYWRDYLVALQSLTAHYRRQLLAGLGATVRRELPKRLYAAG 352 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---- 403 FDD+L RL AL + LA I R+PVA+IDEFQDTDP QY IF+ ++ Sbjct: 353 RQSFDDLLHRLAEALGDPGRKALAGLIAARYPVALIDEFQDTDPIQYAIFQAVYQQASRA 412 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYM-KARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 + T L+LIGDPKQAIYAFRGADIF Y+ AR YT++TNWR+ +V +VN +F+ Sbjct: 413 EAATRLILIGDPKQAIYAFRGADIFAYLGAARDAGEQCYTMNTNWRADRSLVAAVNAIFA 472 Query: 463 QTDDAFMFREIPFIPVKS---------AGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 + F+ EI F PVK G+ + PA L+ G Sbjct: 473 AQPNPFVVPEIAFYPVKPQPEAGDGWHGGEVGGTAPLQFLTLAPAKVEELLTGARSKKQL 532 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGD--DARPVRASDISVLVRSRQEAAQVRDAL 571 +ST+ A + L RG A L GD D RP++ +DI++LVR ++A +++ AL Sbjct: 533 ARSTLENQIPALVAADLVKLLRGGATLTTGDAADRRPLQPADIAILVRENRQADEIQAAL 592 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 L + SV + +R SV + +A+++ LL ++ E R+A+ + ++ ++ TL Sbjct: 593 RLKGVKSV-VHSRASVLNSRQAEQLAILLYGLLEQAGEGQRRAAMVSELLACTPAELVTL 651 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 DE W + +F +R+IWR+RG++ +R + + LL A GERRLT+ H+ Sbjct: 652 AEDEKRWQQWLNDFSRWREIWRERGLISTMRIIDQEKGFTRRLLPMADGERRLTNYRHLF 711 Query: 692 ELLQ-EAGTQLESEHALVRWLSQHIL-EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 ELL + AL++W + D+ A +Q++RLESD+ V+I+TIH++KGLE+ Sbjct: 712 ELLHHREKEEHLQATALLKWFDEARAGRADATAEAQELRLESDQEAVRILTIHRAKGLEF 771 Query: 750 PLVWLPFITNFRVQEQ------AFYHD-RHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 P+V+ P++ +E+ YHD + ++ + L E L E+ AE+LRLL Sbjct: 772 PVVYCPYLWKTWQKERRKPEEVLIYHDPKADYQGKIALLPTAEERRLRAQEQFAEELRLL 831 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE---PQDAAGLRTCIEA 859 YVALTR+ C + + + +AL LL G+ D A L + Sbjct: 832 YVALTRAKHCCLVVW----------EAASGYQDTALAHLLHGGQQPITNDRAELLADLTG 881 Query: 860 LCDDDIAWQ----TAQTGDNQPWQVNDVSTAELNA--KTLQRLPGDNWRVTSYSGLQQRG 913 C WQ A PW+ +TL+ WRV S+S L Sbjct: 882 ACKRQPHWQWRPLPADPATVAPWRDPSRPEGSAGGYCRTLRHGIAPAWRVGSFSQLIAAR 941 Query: 914 HGIAQDLMPRLDVDAAGVASVVE---------------------EPTLTPHQFPRGASPG 952 A D D DA G + + FP G + G Sbjct: 942 GEQAPDFSQSRDYDAPGQPASAPLADTPAAQGGEDHGEAVKQRLPARVPLADFPAGLNAG 1001 Query: 953 TFLHSLFEDLDFTQPVD-PNWVREKLELGGFESQWEPV-----LTEWITAVLQAPL-NET 1005 LH +FE + F + + + E+ G EP L++ + AVLQ PL ++ Sbjct: 1002 NLLHRIFELISFHEASEHRRIIAEQAATFGLTGAMEPEKVVAELSQAVAAVLQTPLLSDE 1061 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP--------LEFMQ 1057 SL+ + +++ EM F P+ + L F + G PP L F Sbjct: 1062 SFSLADIDDQHRLNEMSFTFPLCQRGSPLTAAALAAAFAEEAVGLPPAYPAHLAELPFTA 1121 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 ++G +KGFIDLVF+H G++Y++DYKSN LG+ + Y + M H Y LQY LYT+A Sbjct: 1122 LQGFMKGFIDLVFQHRGKWYIVDYKSNLLGDSHADYQPGRLWPPMVEHHYILQYHLYTVA 1181 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPNAGLIALMDEMF 1172 LHR+L R+ YDY HHFGGV+YLF+RG+ E GI+ RP AGLI + Sbjct: 1182 LHRHLSARLPAYDYRHHFGGVLYLFIRGMHPELGTAAGIFQQRPAAGLIDHLSRRL 1237 >UniRef50_A1KCB1 ATP-dependent exoDNAse beta subunit n=3 Tax=Betaproteobacteria RepID=A1KCB1_AZOSB Length = 1241 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 413/1247 (33%), Positives = 594/1247 (47%), Gaps = 88/1247 (7%) Query: 1 MSDV--AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEE 58 MS + LD PL G RL+EASAGTGKT+ I GL R L VE Sbjct: 1 MSAIANPLPLDVFTCPLDGVRLVEASAGTGKTWNIC--------GLYLRLLLERELAVES 52 Query: 59 LLVVTFTEAATAELRGRIRSNIHE-LRIACLRETTDNPLYERLLEEID----DKAQAAQW 113 +LVVTFT+AATAEL RIR I + LR+ + +P L+ + A+ Sbjct: 53 VLVVTFTKAATAELSSRIRERIVDCLRVLDGGDPGADPFVPGLIACAGAAGIEPPLMAER 112 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L A + DEAA+FTIHGFCQR L F +G+ + +L ED+ LR + DFWRR Sbjct: 113 LRRALQTFDEAAIFTIHGFCQRALADTPFAAGLPYALELAEDDGALRREVAQDFWRREIA 172 Query: 174 PLPREIA--QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 + P+ + R L + + LA+ HA + A Sbjct: 173 AGALAPLLADHLLACGDSPEGWAEMLRRDLARPLAERRWDEAEAADLAALHAALEAAYAD 232 Query: 232 VKQQWRDAVGELDALI-ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES----L 286 +W D G +A+ +++ + A+ + W LP L Sbjct: 233 AVARWGDGQGPCEAVSGALDALNKSSYKPDALARARRQWQDWLGAGDPRRALPGDKDSKL 292 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP-------LSIRDLVITRALAEIRETV 339 ++FL + K GG P F A D LL + R ++ R LAE E + Sbjct: 293 HLLCEQFLAGKVKKGGSAPTGLFFAAADALLGARGAVDAAVDAARLQLLRRFLAEGAEEL 352 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 R KR R ++ FDD+L +AL S + LA A+ R+P A+IDEFQDTDP Q+ IF R Sbjct: 353 RRRKRERRQIAFDDILWNAYAALTSGAQPWLAGALHQRYPAALIDEFQDTDPLQFAIFDR 412 Query: 400 IWHHQP-ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVN 458 +++ + +L L+GDPKQAIY+FR AD+ TY+ AR A YTL TN RS+ ++++ N Sbjct: 413 VYNAEGRHGSLFLVGDPKQAIYSFRSADLHTYLAARDRADACYTLATNQRSSAALIDACN 472 Query: 459 KLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY---- 514 +LFS FM + + V + + + F + A+++W + + Sbjct: 473 RLFSANPAVFMLDGLDYRKVGAGTRPRPPLFDAADDNPAALRLWRIPKDEALEAAAEEEG 532 Query: 515 -----------QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 + Q A + A RP+ +DI+VLVRS + Sbjct: 533 GDGGGGGHRLPREQALQRAARASAAEIARLLAAGAAGEVRIGERPLAPADIAVLVRSHGQ 592 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A++R AL + SV LS SVF T +A+E+ +L A+ P RE + +ALAT+ MG Sbjct: 593 GARMRRALAAFGVGSVELSQA-SVFHTEDAEELERVLIAIAEPAREARVMAALATAAMGY 651 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 A I L DE A V++ F G+R+IW RG MLR MS +A LLA A GERR Sbjct: 652 GAAAIAALAADEAALLRVLDRFAGWREIWLARGFGVMLRRWMSDEGVAARLLARADGERR 711 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 LT+++H++ELLQ+A S L+R L+ E + Q+RLESD++LVQIVTIH+ Sbjct: 712 LTNLMHLAELLQQAAGT-ASPEVLLRTLATRRAE--EGGEAAQLRLESDRNLVQIVTIHR 768 Query: 744 SKGLEYPLVWLPFITNF--RVQEQAFYHDRHSFEAVLDLNAAPESVD------LAEAERL 795 SKGLEY +V+ PF+ + E+ H+ + L L+ E+ AER+ Sbjct: 769 SKGLEYGIVFCPFLFDGYPPPAERGPMRAWHADDGTLVLDYRSEAAADKTIAARIRAERM 828 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 AED+RL YVALTR+V C L V R K G ++ +S L + G D Sbjct: 829 AEDMRLAYVALTRAVHRCYLVVGCYARMAFGKPGYSESGRSLLNWM-AAGAGLDPEAWAE 887 Query: 856 CIEALCDDDIAWQTAQTGD-------NQPWQVNDVSTAELNAKTLQRLPGDN-----WRV 903 + D W+ T + P + + A+ + R+P WR+ Sbjct: 888 HKMTPAEIDARWRGLVTTSGGVISLADLPAGEGEALAQDDGAERVPRVPRPPQVSAGWRI 947 Query: 904 TSYSGLQQRGHG--IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED 961 S+S L A+D R +FPRG G LH++FE Sbjct: 948 GSFSALIFGATHEQAARDHDARQVPVEPESPPAPPPAADDILRFPRGPVAGDCLHAVFER 1007 Query: 962 LDFTQPVD-----PNWVREKLELGGFE-SQWEPVLTEWITAVLQAPL--NETGVSLSQLS 1013 +DFT P + + + + G + ++ +L + VL APL + L L+ Sbjct: 1008 IDFTDPGGWDAAIESALADHPQRGEADGARLHAMLRSMLRDVLDAPLTAGPAPLRLGTLT 1067 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 + E+ F+LP + A L+ + G P L F + G LKGFIDLVF H+ Sbjct: 1068 MARRLTELGFHLPAPR-VEAEALNAWLAA---RGYGVPRLAFTGLEGYLKGFIDLVFEHD 1123 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 GRY++LD+KSN LG + Y + AAMQAH Y LQ+ LYT+ALHR+L + DYDY Sbjct: 1124 GRYWVLDWKSNHLGNAPADYAPARLEAAMQAHGYHLQHLLYTVALHRHLGRCVPDYDYAR 1183 Query: 1134 HFGGVIYLFLRGVDK----EHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 HFGGV+YLF+RGV + G++ RP ++ +D + AG T Sbjct: 1184 HFGGVLYLFVRGVRPGWQADGQPAGVFHHRPEVEVVQALDHLLAGGT 1230 >UniRef50_B4RTM1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Bacteria RepID=B4RTM1_ALTMD Length = 1336 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 375/1297 (28%), Positives = 614/1297 (47%), Gaps = 161/1297 (12%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ A+ LD + +PL+G LIEASAGTGKTF I LYLRLLL + LTV+E+LV Sbjct: 25 NNDAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLL--------EKKLTVKEILV 76 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDN--------PLYERLLEEIDDKAQAAQW 113 +TFT+AAT E++GRI + E + + ++ P+Y+ L + A Sbjct: 77 MTFTKAATEEIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVYQHLFTRCNTDESMA-L 135 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L A+ ++DEA+VFTIH FCQ ++ AF SG L D S L QA D+ R+ Sbjct: 136 LKAAQLELDEASVFTIHAFCQHVITQLAFNSGFAMSLNLGNDTSDLYLQAAEDYIRK-VS 194 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ-----IVAR 228 + + W P+ LL + N ++ + D E R VA Sbjct: 195 KNEDDFRLLAESGWHTPERLLLEFNASIKSTLTPLMLSEQDIELAYQRQLDESPHTSVAY 254 Query: 229 IDTVKQQWRDAVGEL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNS---YQLPE 284 + T+ Q D G L + LI++ ++ + + + + +W +S Y P Sbjct: 255 VKTLSQSVEDNEGLLVEQLIKTPA------HKKERPQELAALKSWLRSCADSGQYYLPPP 308 Query: 285 SLEKFSQRFLEDRTKAGGE---TPRHPLFEAIDQLLAEPLSIRDLV-----ITRALAEIR 336 E F + R +G + TP A+ ++ E V + A+A I+ Sbjct: 309 EAEAFVKGTRYARNSSGVKEILTPIKEFATALKKVFGEKDKALAKVPVFKLVIEAIAFIK 368 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 V ++K++ G + FDD++ L + + ++ +R +FPVA+IDEFQDTD +QY I Sbjct: 369 GRVDKQKKQLGVIDFDDLIRMLADEVVKPNNTLVPE-LRKKFPVALIDEFQDTDAKQYAI 427 Query: 397 FRRIWHHQPETA----------------------LLLIGDPKQAIYAFRGADIFTYMKAR 434 ++ + + LL+IGDPKQAIY FRG DIFTY+KA Sbjct: 428 LDAVYPNASSNSASQTETDLSNDNEESASARVSALLMIGDPKQAIYRFRGGDIFTYLKAG 487 Query: 435 SEVHAHYTLDTNWRSAPGMVNSVNKLF------SQTDDAFMFREIPFIPVKSAGKNQALR 488 + + ++TNWRS GMV + N+LF S T +I + PV+ K A + Sbjct: 488 RQADYRWVMNTNWRSVEGMVKAYNRLFYGAPVASNTPTDVFGFDIKYNPVEFTPKAAAAK 547 Query: 489 FVFKGETQPA-----MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 + + + L E E+ + + MAQ A +I L Q ++ Sbjct: 548 TPLRDPAAQRSAMNYVSLCLEEKENTNI--MRRKMAQWIAQEIYRLLNEAQ----FQLDN 601 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 + +PV+ DI++LV+ R EA +++ L + VYLS+R ++F + EA+++L LL + Sbjct: 602 GETKPVKPQDIAILVKDRTEAGAIKNVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNGI 661 Query: 604 MTPERENTLRSALATSMMGLNALDIETL--NNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 + + S+LA+ + G + + L + D+ WD +++ R +W ++G M +L Sbjct: 662 WHANDTSNVSSSLASPLWGYSPQTLIELLYHEDDAMWDKAMDKVLSLRDMWLQKGCMSVL 721 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 LM + ER LT+ H++E+L++A T + L+ WL++ I +P+S+ Sbjct: 722 LHLMQDS----YVPHADNVERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKPESD 777 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--------FYHDRHS 773 +RLESD L++++T H SKGLEYP+V++P+ T ++ + ++D Sbjct: 778 -EELTLRLESDSQLIRLITQHGSKGLEYPIVFVPYATGYKDASKNGKSTSQIFTFYDEDK 836 Query: 774 FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 833 + + L +++ + E AED+RL YVA+TR+ C +GV PL Sbjct: 837 QDLQMQLGQTAQAIARVQRESEAEDMRLAYVAVTRAAHRCYMGVIPLANN---------- 886 Query: 834 HQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN-----QPWQVNDVSTAE 887 +SAL R L G+ + + + ++D + + GD ++ D + + Sbjct: 887 EKSALARALGLSGDESTNRDWPSVLRRVAEEDESHASYIDGDEFEEIYSGFEQGD-AIPQ 945 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQ-------------RGHGIAQDLMPRL---------- 924 L A + WR+ S+S + + G G + +P L Sbjct: 946 LTALQFTGTASEEWRLYSFSAMSRLTTVGSVKSTDTVEGAGQSLPSVPVLRTVRDEEVYA 1005 Query: 925 ------DVDAAGVASVVEEPTLT----------PHQFPRGASPGTFLHSLFEDLDFTQPV 968 D + G V LT +GAS G LH + E DF+ PV Sbjct: 1006 LDTLSTDGEILGAIDVDSHTPLTQTSAVTKNDLRFTLEKGASAGNLLHDILEHSDFSAPV 1065 Query: 969 DPNWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPI 1027 +E + G E + P L EW+ VLQ PL + +S L+ E EFY P+ Sbjct: 1066 WEETGKELVNRFGLEEKRTPFLYEWLEEVLQTPLYPNVQLCMSDLTLEQTLREAEFYFPM 1125 Query: 1028 SEP-------LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 ++ ++ + ++ + P L +++GM+ GFIDL+F H+G++++ D Sbjct: 1126 NDTQWKQLREVLNTHRQSVAETLGGEAEPAPQLITAKLKGMMHGFIDLIFEHDGQFFVAD 1185 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKS WLG+ +Y A+ Q H YDLQY +Y LALHRYL + + DY+ + HFGGV Y Sbjct: 1186 YKSTWLGDTLESYMPSALFHNNQHHLYDLQYLIYCLALHRYLSNTLPDYEPDIHFGGVYY 1245 Query: 1141 LFLRGVDKEHPQ-QGIYTTRPNAGLIALMDEMFAGMT 1176 L+LRG+ E+ Q +G++ T + L+ +D +FA + Sbjct: 1246 LYLRGMHPENEQGEGVFYTHIPSSLLHQLDAIFASKS 1282 >UniRef50_A6DNF2 Exodeoxyribonuclease V, 135 kDa subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF2_9BACT Length = 1198 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 351/1225 (28%), Positives = 566/1225 (46%), Gaps = 91/1225 (7%) Query: 4 VAETLDPLRLPLQ--GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + + LD L P++ G LIEASAGTGKT++IA ++L +L + V E+LV Sbjct: 1 MMQPLD-LTQPIKDSGITLIEASAGTGKTYSIANIFLHFIL---------KGRDVSEILV 50 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRE-TTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VTFTE AT ELR R+R N+ + + + T ++P + ++E + + + L LA Sbjct: 51 VTFTEDATKELRDRVRKNLSKALLQIRGDVTEEDPTLKAIIEIYPHQDENRRRLELALVN 110 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 D+A + TIHGFCQRML NAFES F+ +L+ D+S L + DF R Y Sbjct: 111 FDQAVISTIHGFCQRMLKENAFESHSTFDMELVTDDSKLIDELVEDFIRIESYDHQSAFN 170 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + L+ + + +G+A ++ L +R + I+ K D + Sbjct: 171 YDAEQ--------LKSLIKLYKGQA----IEEAEEFDLEARKQKF---IELYKAHGHDQI 215 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 L S + + S +I+ + + + + L +++ SQ + K+ Sbjct: 216 EVLQNNKGMSRTQKNPYLLSKFPDYIEHLKLYCKGDERPTAL-KAIVALSQSSINSNMKS 274 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 P H LFEA DQL AE S + + R L RE +K + + FDD++ +L Sbjct: 275 KKVPPTHELFEAADQL-AECYSDK-FIKQRFLKSFREKYEAKKEKLNVMTFDDLIIKLHE 332 Query: 361 AL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP---ETALLLIGDPK 416 AL R ++ L + IR F VA++DEFQDTDP QY+IF+ ++ + E A +IGDPK Sbjct: 333 ALVRDQANGPLHSLIRDNFKVALVDEFQDTDPIQYQIFKSLFGDKSHATEHAFYMIGDPK 392 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ--TDDAFMF---- 470 Q+IY FRGADIF Y++A+++ +TL N+RS MV++VN FSQ D+AF F Sbjct: 393 QSIYRFRGADIFAYLQAKNDADEQFTLQDNYRSEAAMVDAVNHFFSQRGADEAFAFAPAH 452 Query: 471 --REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 I F PV + L+ + E+ E + D Q+ M + +I Sbjct: 453 ESEGITFEPVGAKADKNTLKITGQPESLQLRWYRADEDKDLSKTDLQNLMPSLVTEEIIS 512 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 L Q+G A ++ + ++ DI +LV +A ++ +L IP+V ++ +VF Sbjct: 513 LLNKSQQGSAYF-ESEEKQALKPGDICILVNKNNQATAMKQSLNENGIPAV-VAKSGNVF 570 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGY 648 ++ EA + L AV+ P+ +L L + + L A +I+ L + E ++ EF Y Sbjct: 571 KSAEANALERFLNAVIDPKDS-SLIPLLLSELFTLTAEEIKELGDQERF--ELLTEFVDY 627 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHAL 707 + W KRG + L+ + + L GER L+++ + E+L +E ++ L Sbjct: 628 HREWEKRGFLRTLQKFIDRHQLYTRTLEQDQGERSLSNLYQLREILHEEEQSKGLGPSGL 687 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF 767 +R+L + + D RLE+D + V+I+TIHKSKGLE+P+V+ P++ + +E ++ Sbjct: 688 LRFLQEK-TQADKVDDQYLQRLETDDNAVKIMTIHKSKGLEFPVVFCPYMWSESFEESSY 746 Query: 768 -------------YHDRHSFEAVL---DLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 YHD ++ D E L E L+E LRLLYVALTRS Sbjct: 747 GSFGESNKKNDFEYHDDSRLASLSIDPDEEFRQEKRYLWRREILSEKLRLLYVALTRSAH 806 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA---WQ 868 C L + + + + D++ R+ + + + Sbjct: 807 RCYLYWGDVNVSNTPFEYLANPEVTGADIADGTSTKLDSSQRRSIWQDQVANTSHTKFCE 866 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA-QDLMPRLDVD 927 P + EL + W SYSGL + + LD + Sbjct: 867 LGNIDQMSPCFYRPKNDLELRKPKELKFEFPIWVDGSYSGLIRSHDKVQFTPDQAPLDDE 926 Query: 928 AAGVASVVEEPTLTP---HQFPRGASPGTFLHSLFEDLDFTQPVDPNWV---------RE 975 + + E + P FPRGA PGT +H +FE +DF + Sbjct: 927 GEKIPNAEPEEEIIPEGFFAFPRGAVPGTCIHEIFEHIDFQDERGWEEIIADRLKHYQLH 986 Query: 976 KLELGGFESQWEPVLTE---WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 + EL E + + + + VL L +L + + E+EF+ P+ + + Sbjct: 987 ETELANQEEFFAKRIADCKDMLRKVLSTTLVHNDFALDSIPRHQRLDELEFHYPVKDIQL 1046 Query: 1033 ASQLDTLIRQF-----DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 + + S L + G G IDL F+ +G++Y++D+KSN+LG Sbjct: 1047 KKLQKLFLAHYSDGFPHDYSLDLEKLNYRMEEGYFNGSIDLSFQKDGKFYIVDWKSNYLG 1106 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 Y +A+ A++ H Y LQY +YTLA H YL +A YDY+ HFG IYLF+RGV+ Sbjct: 1107 PRYEDYHGEALQRAVREHFYFLQYHIYTLAFHLYLEKYLAGYDYDQHFGACIYLFVRGVE 1166 Query: 1148 KEHPQQGIYTTRPNAGLIALMDEMF 1172 Q G++ R L+ M ++ Sbjct: 1167 P-GAQSGMHYDRVPKALVEDMKKLI 1190 >UniRef50_A4B915 Exodeoxyribonuclease V, beta subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B915_9GAMM Length = 1130 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 355/1187 (29%), Positives = 566/1187 (47%), Gaps = 83/1187 (6%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MSD+ L+ LPL LIEASAGTGKT+ I +YLRLLL + LTV+++L Sbjct: 4 MSDMP-ILNAGELPLADTHLIEASAGTGKTYNIVRIYLRLLL--------EKELTVDQIL 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEID---DKAQAAQWLLLA 117 V+TFT+AATAE+R R+ + + E + + E I D +A + A Sbjct: 55 VMTFTKAATAEIRNRLSAFLREALQIWETQNYRDDKERAFYETIRRRVDPEKARLQMRQA 114 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 Q+DEAA++TIHGFC+R L+ AF SG+ F + D L QA D++RR Sbjct: 115 LLQLDEAAIYTIHGFCKRALSQQAFFSGLSFHANMEADSQELMLQATQDWYRRI---QQA 171 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 + + E W P+A + +R + + P+ + ++L + H W Sbjct: 172 DWYADIDERWPTPEAFMAHWSRVIGSDIPLNAPTVENLDSLLAEH----------IDSWS 221 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 D L + R+ + + I+ + AE + P+ KF + Sbjct: 222 DERETFLKLNKP----RKAEVIALRDSLIEALDRAAEGQPLQALDPDVESKF----FNTK 273 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 K G + L L + + + + IRE + K R+ +L F+D++ + Sbjct: 274 AKQAGLSVCRRLVHLT---LTNEKARKLNLALDGVRFIREQLNASKARQDQLDFNDLIIQ 330 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ-PETALLLIGDPK 416 L AL L A+ +FP A++DEFQDTDP QY+I RI+H Q L +IGDPK Sbjct: 331 LRRALDGPHAVELQKALLDQFPAALVDEFQDTDPDQYQILNRIYHRQHGPHFLCMIGDPK 390 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF- 475 QAIYAFRG D+F Y+ AR + +T+DTN+RS+P +++ N+ F Q+D F Sbjct: 391 QAIYAFRGGDVFAYLSAREQATQQWTMDTNYRSSPSVIDGYNRTFLQSDAPVNPEAFGFG 450 Query: 476 -IPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG---VGDYQSTMAQVCAAQIRDWLQ 531 + + +F + + L + ++Q ++A C +I L Sbjct: 451 IEYHRILAADDRKDPIFSDDRSGVQWVHLSPADESVNTVKKEFQQSIADWCVQEIAHLLN 510 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 + E R + A DI++LVRS EA ++D L +PSVYLS R +VF+T Sbjct: 511 DVTKDE---------RSITAGDIALLVRSYGEAQLLQDTLRRANLPSVYLSARQNVFQTS 561 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI 651 EA+++ LL + + + +ALA S +GLN ++++ L +DE W F +R+ Sbjct: 562 EARDLYQLLNGIWQADNDRLFLAALAGSWIGLNLIELDQLQHDERLWAQWQTRFVQWRED 621 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWL 711 W +RG+M +L ++ + + + ER LT+ LH++E LQ Q AL+ W Sbjct: 622 WTQRGLMSVLLEILQSHHRPQR----DATERSLTNRLHLAERLQLESNQHRLPDALLHWF 677 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF---- 767 ++ + E D+ Q+RLESD L++I+T+H +KGLEYP+V++PF + + Q+ Sbjct: 678 ARALDE-DTGEEDNQLRLESDDALIKIITMHGAKGLEYPIVFIPFASYYSASRQSPAFYH 736 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 +HDR +F + + E L + E AE +RLLYVA+TR + +AP Sbjct: 737 FHDRETFASQWVYLSNDEQKQLTQEEDEAERIRLLYVAMTRPIDRLYCCLAPFTGFAQSP 796 Query: 828 KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 G T S L + +G + ++ + DI T T ++ + Sbjct: 797 LGLTLKQAS---FELSDISAKVCSGQAATLMSVNERDIQTVTMTTPESPDTSI------- 846 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR 947 A +W ++S+S L + + R ++D G E + + Sbjct: 847 --AAEFHGHIERDWWLSSFSALTRHVGHSSHSTPDRDELDGLGSTETSTE---LRFRLAK 901 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGF--ESQWEPVLTEWITAVLQAPLNET 1005 GA G LH E DFT P P + + + +S + +WI +L AP++ Sbjct: 902 GAEAGNLLHDTLEHCDFTNPDYPTLLEQARKRYSILAKSFTDDEFRQWIDELLHAPID-- 959 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 G L L + E EFY P+ + I +L +I Q + P + +++GM+ GF Sbjct: 960 GFRLCDLPKQKTLREAEFYFPMEDTPI-DKLSAIIAQRRGETFQLP--DRHRLKGMMHGF 1016 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL+F +GRYY+ DYKS LG + Y ++ ++ + YD+QY +Y +ALHRYL R Sbjct: 1017 IDLIFEWQGRYYVADYKSTHLGHQLTHYQPPSIRHSILSSHYDVQYAIYAVALHRYLAGR 1076 Query: 1126 IADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 + Y+ + HFGGV Y +LRG+ + GIY + +D +F Sbjct: 1077 VPGYNPKQHFGGVYYFYLRGMHPDS-TTGIYHDPIGIQDLQALDAVF 1122 >UniRef50_Q7NQR1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Chromobacterium group RepID=Q7NQR1_CHRVO Length = 1196 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 397/1197 (33%), Positives = 558/1197 (46%), Gaps = 63/1197 (5%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + + LD L PLQG LIEASAGTGKT+TIAAL+ RLLL A P +E +LV Sbjct: 1 MNAPQALDALNCPLQGVNLIEASAGTGKTWTIAALFARLLLEERDGAPPP---AIERILV 57 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD---KAQAAQWLLLAE 118 VT+T+AATAELR R+R + E+ + + L + + A Q L A Sbjct: 58 VTYTKAATAELRERLRRRLAEMLALLDGKADGDDFLRALAARFPEGPARDVARQRLTAAV 117 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 D AA++TIHGFCQR+L AFESG F+ +L+ED++ + DFWRR P Sbjct: 118 NGFDAAAIYTIHGFCQRVLTDAAFESGQTFQAELVEDDAARLAEIVDDFWRRRIVAAPL- 176 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 +AQV+ E + P A L +I YL P +K PD L + R + Sbjct: 177 LAQVLVERGETPDAWLAEIRPYLSK--PYLKLRAPDAVRLENARWVASERWRLLASAPEQ 234 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES----LEKFSQRFL 294 L + G + A+ D + W + +L L+K L Sbjct: 235 VEEGLALFLAHPGFKANIYRPDTMARAADNLRGWLAQPDALPELDSDSRKLLDKLRPEAL 294 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI-------TRALAEIRETVAREKRRRG 347 K G + P HPLFE ++ LA D V +A E +AR + Sbjct: 295 AKGMKKGCDAPAHPLFERMEAWLAAWDVYMDQVANSLAGLKLELIAWANEELARRRGVER 354 Query: 348 ELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE 406 FDD+L+ L +AL + G +LAA + F VA+IDEFQDTDP QYRIFRR + + Sbjct: 355 SRSFDDLLTDLGAALDHPATGPLLAAQVADSFSVALIDEFQDTDPTQYRIFRRCFVEEA- 413 Query: 407 TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 + L+GDPKQAIY+FRGADIF Y+ AR + YTLDTN RS +V +VN LF + + Sbjct: 414 RPVFLVGDPKQAIYSFRGADIFAYLAARHDAERQYTLDTNRRSDEPLVATVNALFGR-EL 472 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE-SCGVGDYQSTMAQVCAAQ 525 F+ I + PV +A + R + P WL GE + A+ CA + Sbjct: 473 PFLLDGIAYQPV-AASPSSGGRLEVDDDRAPFNAQWLPAGEKELSKEAAELAAAEACADE 531 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 I L A ++ G R + DI+VLV + + +VR L + SV L+ + Sbjct: 532 IARLLTLAGEDRAAIVKGASRRRLAGGDIAVLVATHSQGDRVRSELRARGVASVALTQ-E 590 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 SVF + EA EML LL A P E LR ALAT + GL+A I+ DE W+ + + Sbjct: 591 SVFASREAGEMLALLHAWAEPANEGRLRRALATELAGLDAARIQAELEDETRWERQLLKN 650 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH 705 Q WR+ G M R + AE LL GERRLT++ H++EL+Q+ + Sbjct: 651 ADDHQRWREHGFMAAWRHYFARERAAERLLPLPDGERRLTNLGHLAELIQQESEGRQGMA 710 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 L+ W + + +P +RLESD LV+IVT+H SKGL+YP+V+ PF+ N ++ + Sbjct: 711 PLLAWFAARVADP-PRGEDAVLRLESDAALVKIVTVHTSKGLQYPVVFCPFLWNGALERR 769 Query: 766 A----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 YHD + A A +E LAE LRLLYVALTR+ + + + Sbjct: 770 GAGFWSYHDGDEPWLAPEAAADDGIRQAARSEMLAEKLRLLYVALTRAQYRQYISWGWVR 829 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI-----------EALCDDDIAWQTA 870 + +AL LL +D A L L A + Sbjct: 830 E----------LKTAALSWLLHAPGARDLAALEALELDGGTVAAQLRAFLDQRGGAARWL 879 Query: 871 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 930 + Q A +R W++ S++ L + A Sbjct: 880 EAEGRQALAGGRDPGRAYAALPFERRLYAPWKIASFTSLTHDAGSHLAEAPDYDRAAAPA 939 Query: 931 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEP 988 A +P FPRGA G LH +FE++ F D V+ L GF +W Sbjct: 940 PAEPAADPVRDRFSFPRGAKAGVCLHEIFENIGFGDAEDDIRAAVQRALARHGFGEEWLD 999 Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD---- 1044 + I L A + G L ++ + +E+EF LP+ + +A+ + L + Sbjct: 1000 AGCDLILGALNAEIAP-GARLRDVADHKRLIELEFTLPVKKLDVAALIAALQKPAHGLAE 1058 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 P L+F V+G LKGF+DLV GR YL+DYKSN LG+ Y ++ A+ Sbjct: 1059 PFRRAAAGLDFASVQGFLKGFVDLVCEAGGRVYLIDYKSNHLGDACDDYRDDSLVHAVAR 1118 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 Y LQY +Y +AL RY R AD+D FGGV YLFLRG+ P G++ P+ Sbjct: 1119 EHYYLQYLIYLVALRRYFAARGADWD--GRFGGVRYLFLRGM--GEPGCGVWADMPS 1171 >UniRef50_Q3JU29 Exodeoxyribonuclease V, beta subunit n=25 Tax=pseudomallei group RepID=Q3JU29_BURP1 Length = 1934 Score = 818 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 406/1281 (31%), Positives = 583/1281 (45%), Gaps = 135/1281 (10%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 A LD PL G IEASAGTGKT+ I ALY+RLLL + L +E+LVV Sbjct: 673 PSASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLL--------EKDLGADEILVV 724 Query: 63 TFTEAATAELRGRIRSNIHELRIAC-LRETTDNPLYERLLEEID------DKAQAAQWLL 115 TFT+AATAEL RIR+ + +L A + +P RL E D AA+ + Sbjct: 725 TFTKAATAELHERIRARLAQLAHALDTGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVR 784 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 A R D+AA+ TIH FCQR L F + M F ++ D+ LR++ ADFWR P+ Sbjct: 785 RALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGALRFELAADFWRTRVEPV 844 Query: 176 P---REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 A+ + E GP AL + R L+ ++ + A A DT Sbjct: 845 AAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRWDGLHAADDGAESAA-RAHFDTA 903 Query: 233 KQQWRDAVGELDALIES--SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 WRD G L L+ +++R ++ +D + + E+ + LP + K + Sbjct: 904 AAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKLT 963 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE-------TVAREK 343 Q LE TK GG TPRH F+ L A ++ R L+ + + +A+ K Sbjct: 964 QSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQRK 1023 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 R R + FDD+L+ L AL ++ L +R R+P A+IDEFQDTDP Q+ IF I+ Sbjct: 1024 RTRRVVSFDDLLANLYRAL--DAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIF-- 1079 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 P L L+GDPKQAIY+FR AD+ TY+ AR+ A YTL N RS P +V++ N++F Sbjct: 1080 APAGPLFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVDACNRVFGA 1139 Query: 464 TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA--MKMWLME-GESCGVGDYQSTMAQ 520 AF+ + + PV++ + +A A ++W + G+ A Sbjct: 1140 NPRAFVLDGLDYEPVRAGSRVRAPLVDATDPLAGAGDFRIWTLPVGDDVLTKRDAQRHAA 1199 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A L G R A+ + G+ P+ AS I+VLV++ ++ + V+ L I SV Sbjct: 1200 HACAAEIARLMRGAREHAVTLGGE---PLAASGIAVLVQTHRQGSLVKRVLAAWGIGSVE 1256 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD- 639 L+ SVF T++A+++ +L A+ P LRSALA+ GL+A + L + D Sbjct: 1257 LAQA-SVFATIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQDG 1315 Query: 640 ---------------------------------VVVEEFDGYRQIWRKRGVMPMLRALMS 666 VE F YR +WR+RG M R L Sbjct: 1316 IDAAAGGASGNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLAG 1375 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 IAE L+A A GERR+TD+ H++EL Q + +RWL+ E Q Sbjct: 1376 ELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRRE--GGGDDAQ 1433 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--------FYHDRHSFEAVL 778 +RLESD++LVQIVT+HKSKGLEY +V+ PF+ + ++E A YHD S AVL Sbjct: 1434 LRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDE-SGCAVL 1492 Query: 779 DLNAAPESVDLAE----AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 E+ + A E+ AE RL+YVALTR+V+ C L R K+ V Sbjct: 1493 HYGCDDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVL 1552 Query: 835 QSALG-----RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ-TGDNQPWQVNDVSTAEL 888 + EP + A L +AL + +P + A Sbjct: 1553 NWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATR 1612 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD--------------------- 927 A+ R D WR+ S+S L + D + Sbjct: 1613 AARRATRGLRDAWRIASFSSLASAIARDESGIARAADDEMRPDHDALAAALGADALEPPD 1672 Query: 928 ------AAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELG 980 A A+ E FPRGA+ G LH L E +F P L Sbjct: 1673 AAAAIAPAPAAAPRELAGDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHER 1732 Query: 981 GFESQWE-----PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 E++ P + + A L A G+ L+ L + EMEF P A Sbjct: 1733 PVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAP----ALD 1788 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 + L R LE + G +KGFID++ H+GR++++D+KSN LG AY + Sbjct: 1789 FNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGE 1848 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE----HP 1151 +A+ AAM H Y LQ LY +ALHRYLR R+ YDY+ H G +Y+F+RGV + Sbjct: 1849 RALDAAMAHHAYHLQALLYMVALHRYLRVRMHGYDYDAHIAGYLYVFVRGVRPDWRNGGA 1908 Query: 1152 QQGIYTTRPNAGLIALMDEMF 1172 G++ RP LI +D + Sbjct: 1909 SAGVHARRPARALIEALDALM 1929 >UniRef50_C8R0F2 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0F2_9DELT Length = 1303 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 391/1330 (29%), Positives = 581/1330 (43%), Gaps = 191/1330 (14%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + + LP +LIEASAGTGKT++I +LYLR +L + L VE++LV++ Sbjct: 3 TPQPFNAAALPSAPLQLIEASAGTGKTYSITSLYLRFIL--------EQELPVEKILVLS 54 Query: 64 FTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 FTEAATAEL GR+R+ + A + T++P + L+ + + L A +D Sbjct: 55 FTEAATAELHGRLRARLQAAATAFQQGGGTNDPFLQELVRNSRRPERDLRLLQRAVSDID 114 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF--------------- 167 +AAV TIH FC R+L AFESGM FE +L+ + + + DF Sbjct: 115 QAAVTTIHSFCHRVLQQGAFESGMPFELELLGEVTPFIDELIYDFLATLHHRDDPRLLAL 174 Query: 168 WRRH------------------------CYPLPREI----AQVVFETWKGPQALLRDINR 199 WRR P I A++ + + P L R Sbjct: 175 WRRVYSLTELRALVREGLRHRHFPLLTGVSEQPHRIFGRSARLTYRGYAAPGCLPEPAAR 234 Query: 200 YLQGEAPVIKAPPP---DDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRK 256 + P + A + A I R +Q W+ E+ + + +K Sbjct: 235 LFAYGPLDRQFSAPVGAETSPWAGQMADIQRRYTRARQCWQQNREEIVKTLHDTDF-LKK 293 Query: 257 FNRSNQAKWIDKIS-AWAEEETNSYQLPESLEKFSQRFLED--------RTKAGGETPRH 307 + A +DK++ A E S LP EK + D G PRH Sbjct: 294 YRDLLAAGLVDKLAVHLAAPEPRSLVLPSGAEKMTPAVFNDPDGGVCKKINIKKGNIPRH 353 Query: 308 PLFEAIDQLLA----EPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 F+ + S + + LA R + G FDD+L L+ ALR Sbjct: 354 RFFDLWAHYMEPVQKLAFSYQTAIQQELLAFARRELPARLAAAGLQSFDDLLYGLERALR 413 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH------QPETALLLIGDPKQ 417 L I +R+PVA+IDEFQDTDP QY IF++++ + L+LIGDPKQ Sbjct: 414 GPGAAALRRFIGSRYPVALIDEFQDTDPVQYSIFQQVYGQHVAGGREEGRRLILIGDPKQ 473 Query: 418 AIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI 476 AIYAFRGADIF Y++A + YT+ NWR+ +V +VN LF F+ I F Sbjct: 474 AIYAFRGADIFAYLQAAQDAGEQRYTMTINWRADRRLVAAVNALFQPVAQPFVVPGIDFP 533 Query: 477 PVKSAGKNQALR----FVFKGETQP----------AMKMWLMEGESCGVGDYQSTMAQVC 522 V + L + + QP A ++ G + + + Sbjct: 534 AVTARPDAPDLWRETTSAGEEDEQPLQFLLPPPKLAERLNSGPGRLPARSRVEKAVPNLV 593 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 AA I L+ R +R +DI+VLVRS Q+AA V+ AL + +V L Sbjct: 594 AADIVRLLEGA--------GSLGERGLRPADIAVLVRSNQQAALVQHALQRRGVAAV-LH 644 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 +R+SVF++ EA+++ LL ++ E R+A+ + ++G ++E+L DE W + Sbjct: 645 SRESVFQSTEARQLSILLHGLLGQAGEPQRRAAMLSGLLGCTRAELESLEEDEQQWQSWL 704 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL--QEAGTQ 700 F + ++W +RG M ++RA+ + + LL G+RRLT+ H++ELL QE Sbjct: 705 LRFTRWSRLWSERGFMAVMRAIGEEQEMPARLLNHPNGQRRLTNFRHLAELLHNQEREAH 764 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760 L+ AL++WL + I + ++RLESD+ VQ++TIH+SKGL+YP+V+ P++ Sbjct: 765 LQPP-ALLKWLDEGIAGLRPGSEFDELRLESDEEAVQVLTIHRSKGLQYPVVYCPYLWKT 823 Query: 761 RVQEQ-------AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 ++ F+ ++ + L E E AEDLRLLYVALTR+ C Sbjct: 824 GKRKNEEKDKFFTFHDPDDHWQGKITLQPDDEQRQARRRELFAEDLRLLYVALTRARHCC 883 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP---------QDAAGLRTCIEALCDDD 864 R G +SAL LL GE A L+ + ++ Sbjct: 884 ----------RAVWFGADGYQESALAYLLHGGEQGHPPADLTGLSFAELQQRLHRRVANE 933 Query: 865 IAW----QTAQTGDNQPWQVNDVSTAELNAKTLQRL------PGDNWRVTSYSGLQQRGH 914 W +A+T P + A RL WRV S+S L R Sbjct: 934 PDWGLQTASAETIPAPPQHGQVQKPSAAAAADPTRLRQMQTTIDTAWRVGSFSHLIARAS 993 Query: 915 GIAQDLMPRL---------------------------DVDAAGV---ASVVEEPTLTP-- 942 + + R D DAAG A+ V P Sbjct: 994 ELNATVSERDYDAAADAAATVAGDSAGAAARTATGDSDGDAAGDRGGAAPVTAAGAPPVS 1053 Query: 943 ---------HQFPRGASPGTFLHSLFEDLDFTQP-VDPNWVREKLELGGFE-SQWEPVLT 991 P GA+ G H + E + F QP + E+L + G + QW+PVL Sbjct: 1054 LRLAARVPLADLPAGAAIGNLWHRILELISFQQPDQHQEIIAEQLRIFGVDRRQWQPVLE 1113 Query: 992 EWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC 1050 E + +L PL L+ + + EM F P+ + + L R F Sbjct: 1114 EALATILDTPLTAAEPFRLADIKDTERLNEMAFIGPVRQQDQPLEAADLARVFKQFPENL 1173 Query: 1051 PP--------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 PP L F ++G LKGF+DL+ R + ++Y++DYKSN LG + Y + AM Sbjct: 1174 PPGYADRLAQLRFPALQGYLKGFVDLICRWQNKWYVIDYKSNLLGPTHADYQPANLLPAM 1233 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPN 1161 H Y LQY LYTLALHR+L R+ DYDY+ HFGG +YLFLRG+ + P GI+ RP Sbjct: 1234 SNHHYILQYHLYTLALHRHLAQRLPDYDYDQHFGGALYLFLRGLHPDLGPAAGIHHERPP 1293 Query: 1162 AGLIALMDEM 1171 I + + Sbjct: 1294 RQRIEALAGL 1303 >UniRef50_C6NU55 Exodeoxyribonuclease V beta chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU55_9GAMM Length = 1185 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 403/1204 (33%), Positives = 586/1204 (48%), Gaps = 63/1204 (5%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 ++ LDPL LPLQG LIEASAGTGKT+TIA LYLRLLLG G A PR E+LV+T Sbjct: 1 MSRVLDPLSLPLQGSALIEASAGTGKTYTIATLYLRLLLGHGEPATPPRQ--PREILVMT 58 Query: 64 FTEAATAELRGRIRSNIHELRIACLRET---TDNPLYERLLEEIDDKAQAAQ---WLLLA 117 FT AAT ELR RI ++E A + + L +RLL + D A A L A Sbjct: 59 FTRAATEELRERIALRLYETITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLENA 118 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 +DEA++ TI +C R+L +A +G E +++ D + LR +A DFWRR YPL R Sbjct: 119 FNSVDEASIHTIDAWCHRVLREHALATGHDPEAEILTDSAPLRIRAVQDFWRREIYPLQR 178 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW- 236 + T P+ LL + + P+ + L + A ++ +K QW Sbjct: 179 AAPWWLQRT-PDPETLLEQVAGLPWLDPPLPAPRAAFHDWLENAAAPLLKAGTELKAQWS 237 Query: 237 ---RDAVGELDALIESSG---IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 RD G + ++R+ + + W E+ S + Sbjct: 238 STLRDTYGRWLRELADRDPYPLNRKSLPPEKLQGALQSLDQWCVEKDASIPTAMATVAKL 297 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLA--EPLSIRDLVI-----TRALAEIRETVAREK 343 L + K G P P D LA + + D V+ +A A + EK Sbjct: 298 GSALAECVKKGMHCPAPPSQAQFDTFLAALQQWQVDDEVLHGQALAQAAASMAALYGEEK 357 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 +R +L F+D+ L + LR GE LA A+R RFPV +IDEFQD+ +QY IF RI+ Sbjct: 358 QRLRQLEFNDLSRALWNGLRGPGGEALAEALRQRFPVILIDEFQDSSARQYAIFERIYRP 417 Query: 404 Q---PETALLLIGDPKQAIYAFRGADIFTYMKARSE-VHAHYTLDTNWRSAPGMVNSVNK 459 P++ +LLIGDPKQ+IY FRGAD+ +Y++AR++ HY L TN+RSA +V ++N Sbjct: 418 SEPWPDSLMLLIGDPKQSIYRFRGADLDSYLRARADTAPRHYVLGTNYRSAEPLVGALNA 477 Query: 460 LFSQTDD-----AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 L+++ D+ AF +R +P+ V +AG++Q + G+ PA+ + Sbjct: 478 LYARADERCPGGAFDYRGEGDDPLPYQAVAAAGRSQRWQL--GGQEGPAITFAQHPL-AL 534 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 ++ + A+ AA I L G + R V A DI++L+R R+EAA + Sbjct: 535 TKEEFLTHFAEWTAATIAQLL--GDSTSGFVGADGKLRRVGAGDIAILLRDRKEAAIMLS 592 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL +P+ +LS + SV+ + EA+E+ L A++ PE E LR ALA ++GL D+ Sbjct: 593 ALHRRGLPAAFLSEKQSVYHSPEAEELRLWLFALLHPEDEAALRCALALPLLGLAQHDLW 652 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 L+ DE W VE + +IW G++ L + + A +LA GERRL+++LH Sbjct: 653 RLDTDEGLWAQEVERLREHARIWAHSGILTTLHRRLHQQATAARILARPDGERRLSNLLH 712 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 + ELLQ+A LE AL+ L + D+ A S +RLESD H ++I TIH +KGL+Y Sbjct: 713 LGELLQQASQHLEGREALLEHLQREQDSEDNPADSHVLRLESDAHCIRIRTIHSAKGLQY 772 Query: 750 PLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 PLV+LPFI R + + L+ S +L + ERL EDLRLLYVALTR+ Sbjct: 773 PLVFLPFIAATRKDGNVPPWQVVTDDDHSTLSWQSPSAELMDRERLREDLRLLYVALTRA 832 Query: 810 VWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT 869 + LG+A G +SA+GRLL E + + + Sbjct: 833 EYALWLGLAA-----GKTASTPLWWRSAVGRLLGADEGKTPDQCLETWKRYPACRVLAAD 887 Query: 870 AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAA 929 P + + +W + S+S L Q + + P D Sbjct: 888 TIPSAPAP-RFAEPPEPRRTPPVYTARFERDWSIHSFSRLSQ---SLQTSVGPYPSPDRL 943 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL--DFTQPVD-PNWVREKLELGGFESQW 986 + E H FP+G G FLH L + L D P D + + G+ + W Sbjct: 944 DPGA--EAAGQGWHTFPQGPGAGRFLHELLQWLWRDGRWPEDWREDFLHRCDERGY-APW 1000 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 VL W + +PL G + ++L EM F+ P S+ L +QLDTL RQ+ Sbjct: 1001 GSVLVHWFAVLRASPLGSLGTTFAELRGAR--TEMPFWFP-SQHLPTNQLDTLCRQYLLP 1057 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 P L + G+ GF+DLVF +GRYY+LDYKS LGE+ +AY A+ + HR Sbjct: 1058 GRERPILGKQNLHGLFHGFMDLVFAVDGRYYVLDYKSTRLGENDAAYGDTAIREDVLEHR 1117 Query: 1107 YDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 Y+LQ LY LALHR+LR R+ Y E H GG +LR G+ + L+ Sbjct: 1118 YELQAALYLLALHRHLRQRLGRQYRTEQHLGGAWLWYLRAC--ATAGGGLLYLAADPQLL 1175 Query: 1166 ALMD 1169 +D Sbjct: 1176 DALD 1179 >UniRef50_C4ZM86 Exodeoxyribonuclease V, beta subunit n=2 Tax=Proteobacteria RepID=C4ZM86_THASP Length = 1321 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 452/1324 (34%), Positives = 624/1324 (47%), Gaps = 170/1324 (12%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG-SAAFPRPLTVEELLVV 62 ++ LDP PL+G RLIEASAGTGKT+TIAALYLRL+LG G AF RPL E+LV+ Sbjct: 1 MSHRLDPACFPLRGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVM 60 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEIDDKAQAAQWLLLAER 119 TFT AAT EL RIR + E E +PL + L D A Sbjct: 61 TFTRAATRELSERIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAM 120 Query: 120 QMDEAA---VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 VFTI +CQRML +AF+SG F+++L DES+L +A D+WR+HCYPL Sbjct: 121 AAAAMDDAAVFTIDAWCQRMLREHAFDSGNPFDEELAADESVLLTEAAQDYWRQHCYPLA 180 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEA----------------PVIKAPPPDDETLAS 220 E ++V W AL+ D+ + P + D Sbjct: 181 GEALELVLAQWADVHALVEDMRALVGQPLQGADRDDGGDRDRSADPGDQDGVRRDSAGGE 240 Query: 221 RHAQIVARID--------TVKQQWRDAVGELDALI------ESSGIDRRKFNRSNQAKWI 266 A ++ R+ + + W + + + ++ +R K + W+ Sbjct: 241 TLAALIGRVGGAHRRARVALSRGWAERARAMKDWLDEELATKAKLWNRTKLHERYYTPWL 300 Query: 267 DKISAWAEEETNS-YQLPESL-EKFSQRFLEDRTKAGGETPRHP-LFEAIDQLLAEPLSI 323 + + WA + +LP+S + + L + KA P P F A L+ + ++ Sbjct: 301 EALEQWARNPLDRRLELPDSARHRLTPDGLLEARKADAPAPVLPEHFAAFAGLIEDHDAL 360 Query: 324 ---RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPV 380 R + A + E +A KR+ GF D+L RLD AL G L I T++PV Sbjct: 361 PDPRTALRIHAATRVGERLAELKRQARSFGFADLLDRLDRALAGPHGARLRERILTQYPV 420 Query: 381 AMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSE- 436 A+IDEFQDT P QYR+F ++ P +ALLLIGDPKQ+IY FRGADI++Y++AR Sbjct: 421 ALIDEFQDTSPLQYRLFDALYRAADDDPRSALLLIGDPKQSIYGFRGADIYSYLQARRAT 480 Query: 437 VHAHYTLDTNWRSAPGMVNSVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQA 486 HY L TN+RSA +V +VN F+Q +D AF FR+ +PF V + G+ + Sbjct: 481 AGRHYMLGTNFRSAHALVGAVNAWFAQAEDRPGAGAFGFRDGADNALPFEAVAAQGREEV 540 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 F G PA+ + + G+ + A CA +I WL G G Sbjct: 541 --FHADGGVPPAL-LIHHDLTLRSAGEIRRLFAARCAERIVGWLNDEHAG--FQAPGKAF 595 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 + +R +DI+VLVRS +EAA+VR AL + SVYLS++DSVF + EA ++L L+AV +P Sbjct: 596 QRLRPADIAVLVRSGREAAEVRRALRRRGLASVYLSDKDSVFASAEAHDLLHWLRAVASP 655 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 +R+ALAT +GL+ ++ L + + A+D E+F WR+ GV+ MLR + Sbjct: 656 LDARLVRAALATRTVGLSIPELARLASSDAAFDARSEQFRALHVAWRELGVLTMLRRSLH 715 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 ++ LA GERRLT+ LH++ELLQ+AG LE E ALVRWL+ I S A +Q Sbjct: 716 LLDLPARWLAEPEGERRLTNFLHLAELLQQAGATLEGETALVRWLAMTIEAGGSRAGEEQ 775 Query: 727 -MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHSFEAVLDLN 781 +RLESD LV++VT+HKSKGLEYP+V LPF T+FR E+ S L L+ Sbjct: 776 VVRLESDADLVKVVTVHKSKGLEYPVVCLPFATSFRAVERRTARYLKLADASGRRRLALD 835 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 ++ AEAERL EDLRL YVALTR+ +G A + +G H+SA G L Sbjct: 836 YDDADLERAEAERLREDLRLFYVALTRARHALWMGFAAVRIGKGKAC---QTHRSAPGHL 892 Query: 842 LQKGEPQDAAGLRTC---------------IEALCDDDIAWQTAQTGDNQPWQVNDVSTA 886 L G D A EA IA + A + + Sbjct: 893 LAGGAALDEAAWLAPLQALATAAAQDGATGTEADGRTRIALEAAPPEEAHTLLRRREALP 952 Query: 887 ELNAKTLQR-LPGDNWRVTSYSGLQQR----------GHGIAQDLMPRLDVDAAGVASVV 935 L R W + S+S L + G G A R A+ Sbjct: 953 PLQDSAPYRADFERRWSLGSFSALVRDIDPAQMVALPGAGSAPPAPARGTTADLFAAAPD 1012 Query: 936 EEPTLTPHQ--------------------------------------FPRGASPGTFL-- 955 E + P P GA G L Sbjct: 1013 EAGSAAPLAADDYGQAEAAGAARILPVHVRRPAADEALVRLEEDAALAPSGADGGLALAP 1072 Query: 956 --------HS-------------LFEDL---DFTQPVDP---NWVREKLELGGFESQWEP 988 H + E L F + +R + E G + Sbjct: 1073 PDTDRPPWHRFPRGAFAGDFLHDVLEWLAAEGFALGANEGLEAALRRRCERAGHGER-TD 1131 Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 L +W+ A+L A L +L L EMEF+LP S L A+ +D L R+ + Sbjct: 1132 ELVQWMRALLGARLPSLDAALQDLRVL--ITEMEFWLP-SAHLQATAVDALCRRHLLHAQ 1188 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 P L ++ GML GF DLVF H+GRY++LDYKSN LGED SAY + A+ AAM HRYD Sbjct: 1189 PRPALPQRELHGMLMGFADLVFEHDGRYWVLDYKSNSLGEDGSAYDRAALEAAMAHHRYD 1248 Query: 1109 LQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIAL 1167 +Q +Y LALHR LR R+ Y+ GG +YLFLRG+D P +G Y LI L Sbjct: 1249 VQAAIYLLALHRLLRARLGGAYEPARQLGGALYLFLRGIDG--PARGEYAIPATPALIEL 1306 Query: 1168 MDEM 1171 +D + Sbjct: 1307 LDTL 1310 >UniRef50_Q480N9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480N9_COLP3 Length = 1286 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 352/1305 (26%), Positives = 565/1305 (43%), Gaps = 179/1305 (13%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + LD + L G+ LIEASAGTGKT+ I +Y R LTVE++L++TFT Sbjct: 24 QNLDAATIELTGKHLIEASAGTGKTYNITRIY--------LRLLLERELTVEQILLMTFT 75 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 + AT ELRGRI + I + + L + I +K Q L A +DEAA Sbjct: 76 KDATQELRGRIDAFIRLALSDWDSLCLKDAYFATLAQRI-EKKQREFLLKRALLFLDEAA 134 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQR+LN AF SG+ F + + S + Q C D++R E ++ Sbjct: 135 IFTIHGFCQRVLNQYAFTSGLPFNANMAANSSEITLQVCQDWYRS-LAKSDHECFMLLAS 193 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 W P + L ++ + + + D E++ + I V+ + D Sbjct: 194 YWATPDSFLSSFSKAIGHTSTL---SVVDVESIEAEF------IVLVRLAAQTLTANSDL 244 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAE----EETNSYQLPESLEKFSQRFLEDRTKAG 301 + ++ ++ + + ++ W E +E + + E K F + + A Sbjct: 245 FENGLILVKKGADQEKRRDELSQLKIWLESIISKELSLLDVGEGKVKMPDGFFDGKRYAR 304 Query: 302 GE---------TPRHPLFEAIDQLLAEPLSIRDLVITRA-LAEIRETVAREKRRRGELGF 351 P + E + ++ R I ++ + IR+ V +K+ L F Sbjct: 305 STYKAELLEAFAPVKEVKEQVKKIANNINKARAYGIVKSGIYIIRQQVIEQKKALNLLDF 364 Query: 352 DDMLSRLDSALR-----SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP- 405 DD+++ L + L+ E ++LA + ++PVA+IDEFQDTDP+Q+ I + I++ Sbjct: 365 DDLINTLANCLQSDSSGDEHSQLLAKQLLAQYPVALIDEFQDTDPKQFGILQSIYYGDNA 424 Query: 406 ---ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 L LIGDPKQAIY FRG DIF Y+ ARS H+ +DTNWRS P M+ N+ F+ Sbjct: 425 KKANAGLFLIGDPKQAIYGFRGGDIFAYLNARSGCDHHWLMDTNWRSTPQMIEGYNQFFT 484 Query: 463 QTDDAFMFRE------------------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 + E IP++PV + K+ + V + + Sbjct: 485 YKRNGSSSEETVSNEVNKQQSESVFGFGIPYLPVLAGKKSAQAQQVILDSDKALQFIHFT 544 Query: 505 EGESCGVGDYQST---------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 E+ + Q +A CA +I L + + V DI+ Sbjct: 545 NDETSNDTNPQGDKVSQGSRPMLANWCANEIVTLLAS----------KEQTGKVNPKDIA 594 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +LVR EA ++ AL + SV+LS+R ++F + +A+++L LL+ V+ PE E +A Sbjct: 595 ILVRDGAEARDIKHALQQAGLDSVFLSDRANLFHSQQAKQLLGLLKGVLLPENERLFVAA 654 Query: 616 LATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 L+ ++G +A + L DE A+ + F YR W+++G + M A N+ NLL Sbjct: 655 LSCGLLGFDAKKLHQLQQDEMAYQTLKFAFVDYRTQWQRQGFITM------AINLMHNLL 708 Query: 676 ATAGG--ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 +R LT++LH+ E+LQ A +L L+ W Q ++N ++RLESD Sbjct: 709 DVPQNNKDRCLTNVLHLFEILQAASVRLSQGQELLHWFEQQC-HLETNDVEAELRLESDG 767 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQ--------EQAFYHDRHSFEAVLDLNAAPE 785 L++++T H SKGLEYP V++PF + YHD + + L L+ + E Sbjct: 768 DLIRLITQHGSKGLEYPYVFIPFACRHKDPLKFGNKSVSYLEYHDANG-KLCLSLDGSKE 826 Query: 786 SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG 845 + E AE +RLLYVA+TR+ C + H S LG+ LQ Sbjct: 827 AKKAMSNEAYAESIRLLYVAITRAERRCYVLCCAF----------DAYHLSPLGKTLQFQ 876 Query: 846 EPQDAAGLRTCIEALCDDDIAWQT----------AQTGDNQPWQVNDVSTAEL---NAKT 892 E + ++A + I + + D S E Sbjct: 877 EQESIIKPLQVLKASAEHAIGIREVSLDCSIDLYLEKNDEAALHQPKNSPQEFANTEVSK 936 Query: 893 LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR---------LDVDAAGVASVVEEPTLTPH 943 +W ++S++ L + R LD D+ + Sbjct: 937 FIGKIERDWWLSSFTALSRNIRHAGVSNPDRDTTDIANRQLDTDSEHTDIELLSAEQICF 996 Query: 944 QFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGG----------FESQWEPVLTEW 993 + +GA G LH + E DF++P + + L G S L +W Sbjct: 997 KLSKGAHTGNLLHDILEQTDFSEPDWQESLEKPLLAYGELNASNANSISTSFTSDDLIQW 1056 Query: 994 ITAVLQAPL-----------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 + V+ AP +E L+ ++ E EFY P+ + + L L+ Sbjct: 1057 LEQVISAPFISSHHSALTTDSENAGCLADIAFNRTLRESEFYFPM-QGEGTNALANLLTD 1115 Query: 1043 FDPLSAGCPPLE--------------------------FMQVRGMLKGFIDLVFRHEGRY 1076 + + ++ GM+ GFIDL+F ++G+Y Sbjct: 1116 HRNRAERTDTGNSISTGRNSGISKTLNNTLKYPVMLPSYKKLSGMMHGFIDLIFEYQGKY 1175 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 YL DYKS+ LG+ Y A+ ++ + YDLQY +Y+LALHRYL+ + DYD HFG Sbjct: 1176 YLCDYKSSHLGDSFQDYQFDALLDNVEKNYYDLQYLIYSLALHRYLKQTLVDYDVNQHFG 1235 Query: 1137 GVIYLFLRGV--DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 GV YL+LRG+ + EH G+Y + I +D +F+ E Sbjct: 1236 GVYYLYLRGMTTEPEHKGAGVYYRKITEQEINNLDALFSNKESNE 1280 >UniRef50_C1ACJ1 Exodeoxyribonuclease V beta subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ1_GEMAT Length = 1210 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 386/1238 (31%), Positives = 562/1238 (45%), Gaps = 94/1238 (7%) Query: 1 MSDVAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 MS A D R P G LIEASAGTGKTF IA +RLLL +A P + + Sbjct: 1 MSRAAGPFDVARSPFPPGISLIEASAGTGKTFNIAMSVVRLLLEQ-DAAGQPIVSGLGGI 59 Query: 60 LVVTFTEAATAELRGRIRSNI---HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLL 116 LVVTFT AAT EL R+R + HE+ L +++ + + AA Sbjct: 60 LVVTFTNAATEELVTRVRRMLQLAHEVWSGALYAKSNSEIEILRELANGREPWAATRAQE 119 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A R +D AVFTIHGFC+R+L+ A ESG F +L++D + L +A D+WRR Y P Sbjct: 120 ALRALDALAVFTIHGFCKRVLDEFALESGAPFSMELLDDPTPLIEEAMFDWWRRTFYIDP 179 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 A V W P + ++D + + V+ P S + R+ V Sbjct: 180 ALAAWAVHRQW-SPLSFVQDYAMWRRWPDAVL-DPMIRLSEARSVLTTVAKRMLDVWSPD 237 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWA----EEETNSYQLPESLEKFSQR 292 + + ++ I + A + + + + K ++ Sbjct: 238 SLRGTAAAVKWNKGAVLATEDGLASLDALIQEARAGSLAAMQGLAGALNIDALQAKANKV 297 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 ++R A G P+ A L A + V L ++ + V KR R +GFD Sbjct: 298 GKQNRATADGIADW-PIAVAATALAAAIQQLVLAVRADCLQDVDDRVRTLKRERSLMGFD 356 Query: 353 DMLSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLL 411 D+L +L + L ++ E +LA AIR +F A+IDEFQDTD Q+ +FR + QP L L Sbjct: 357 DLLGQLHAVLAAQGSEGLLARAIRQQFQAALIDEFQDTDSHQFHVFRIAFAGQP---LFL 413 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 IGDPKQAIYAFRGAD+ Y++A + Y+L+ N+RS P MV +VN LFS++ F+ Sbjct: 414 IGDPKQAIYAFRGADVRAYLEAARQASHRYSLEFNFRSTPPMVQAVNALFSRSTAPFVEP 473 Query: 472 EIPFIPVKSAGKNQALRFVF--KGETQPAMKMWLMEGESCG--VGDYQSTMAQVCAAQIR 527 EI F P + + + V G + G S +G ++ + + CA++I Sbjct: 474 EIAFHPATARNFDPNPKGVAGSHGLHWLFVPPDTRNGNSVPTPIGQARTLLFRACASRIA 533 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 +++ V I+VLVR E ++ L + SV +S V Sbjct: 534 SYIKQE---------------VPPGRIAVLVRKGFEGVEMVQVLAEAGVRSV-VSGLGDV 577 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN--NDEHAWDVVVEEF 645 ++LE E+ +L+A+ P + +R+ALAT++ G D+ L E W+ ++ E Sbjct: 578 MQSLEMAELQRVLEAIAVPRDPSRVRAALATTLWGATHEDLVRLASPEGEREWEEILTEV 637 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SE 704 R++W +G + +L L +R + L G+RRLT++ H ELL A Q S Sbjct: 638 ASLRELWATQGTLQLLERLFESRAVVSRYLTYTDGDRRLTNLRHAQELLHGAAEQDALSI 697 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 +RWL EP +++RLESD VQIVT+H+SKGLEY LV+ P + R E Sbjct: 698 EGTLRWLDAARREPAETRGVRELRLESDDDAVQIVTVHRSKGLEYDLVFCPTLWGVRRVE 757 Query: 765 QAFYHDRHSFEAVLDLNAAP---ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 H V+ + +P E AE ERLAED RL+YVALTR+ + + P+ Sbjct: 758 PDAPVLVHEQGRVVYDHGSPRLAERTAQAERERLAEDCRLVYVALTRARFRTYVAWGPIG 817 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEP-QDAAGLRTCIEALCDDDIAWQ--TAQTGDNQP- 877 QSAL LL G D G + L AWQ D P Sbjct: 818 N------APNGSEQSALSWLLFDGAAAPDRDGPAAVADQLRAAPDAWQGMLRSLVDAHPS 871 Query: 878 ---------WQVNDVSTA------------ELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 WQ A +L + R + + S++ L + Sbjct: 872 LMALDMVDTWQPIAPVAAAPQAPPLTGHARQLPSVPSLRERFSTFSIASFTSLTAGVYES 931 Query: 917 AQDLMPR---LDVDAAGVASVVEEPTLTPHQF---PRGASPGTFLHSLFEDLDF--TQPV 968 + M D DA A+ V T PH F P GA PGT LH++FE F + Sbjct: 932 LRAEMSEQVARDRDAQPDATPVTTVTNDPHDFRTFPAGAVPGTVLHAIFEHAHFDGSPAA 991 Query: 969 DPNWVREKLELGGFESQWEPVLT----EWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 +L + GF+ + T + +LQAPL G +L+ + A + E +F Sbjct: 992 WQEIADRELLVLGFDEDEHELRTASTVRMMQRLLQAPLPGLGFALAAVPASRTRREWQFL 1051 Query: 1025 LPIS---EPLIASQLDTLIRQFD-----PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 LP++ + L + Q + L F ++ G L GF+DL+F HEGR+ Sbjct: 1052 LPLASADHVMTRQALAAVFAQHGGAHGAAYADQLRRLSFNRLHGYLTGFVDLLFEHEGRW 1111 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 Y++D+KSN LG D+ AY A+ M H Y LQY LY +A HR+L R+ DYDY+ H G Sbjct: 1112 YVVDWKSNQLGADNGAYKSSALQTVMDDHHYTLQYHLYLVAAHRFLAQRVPDYDYDTHIG 1171 Query: 1137 GVIYLFLRGV-DKEHPQQGIYTTRPNAGLIALMDEMFA 1173 G Y FLRG D G + RP A LI + Sbjct: 1172 GAAYAFLRGFADASVDGTGWFVHRPPAALIRALSAALG 1209 >UniRef50_A9M3L9 Exodeoxyribonuclease V beta subunit n=30 Tax=Neisseria RepID=A9M3L9_NEIM0 Length = 1204 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 369/1250 (29%), Positives = 555/1250 (44%), Gaps = 129/1250 (10%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS + DPL +P+ G LIEASAGTGKT+ IAAL+ RL++ VE +L Sbjct: 1 MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQK--------NVERVL 52 Query: 61 VVTFTEAATAELRGRIRSNIHEL---------------------RIACLRETTDNPLYER 99 VVTFT+AATAEL+ R+R+ + ++ C + Sbjct: 53 VVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPA 112 Query: 100 LLEEIDDKAQAAQ---WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE 156 LL++ K + L A Q D AA++TIHGFCQR+L AF F+ +L E++ Sbjct: 113 LLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEED 172 Query: 157 SLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDE 216 DFWR P +A + F+ PQ +L I YL + P D + Sbjct: 173 GDRLLIPAQDFWRERVSNDPV-LAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLK 231 Query: 217 TLASRHAQIVARIDTVKQQWRDAVGELDA--LIESSGIDRRKFNRSNQAKWIDKISAWAE 274 A R+A+ T Q + EL+A ++ + +++ +++ + Sbjct: 232 Q-AQRNAE------TSWQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSA 284 Query: 275 EETNSYQLPES---LEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA----------EPL 321 + ++ L K + LE K G TP +F + +L Sbjct: 285 AGQLPFLDKDTHDRLLKLASDKLEAGLKKGK-TPDAAVFAELQKLADFGRDLNALEEAEE 343 Query: 322 SIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPV 380 + + + + ++A K+ R E GFDD+L + +AL + E LA A+ + Sbjct: 344 ATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWET 403 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 A+IDEFQDTDP QY IF++I+ Q L L+GDPKQAIY+FRGADI+ Y++A + Sbjct: 404 ALIDEFQDTDPLQYEIFQKIFIAQ-NRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHR 462 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 YTL TN+RS ++ S+ LF + F+ I + V +A L +PA++ Sbjct: 463 YTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRL-----SPKRPAVQ 517 Query: 501 M-WLME--GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + WL E E + A CA +I L G P+++ DI+VL Sbjct: 518 VRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF----KGYPLQSGDIAVL 573 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 VR+ EA V AL ++ SV LS R+SVF + EA + L+ + P R TLR L Sbjct: 574 VRTHNEAVMVSAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLT 632 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 + + G +A + N +E E W + G+ ++ I LL+ Sbjct: 633 SGIFGYDAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSR 692 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI-LEPDSNASSQQMRLESDKHLV 736 G R LT+ + ELL Q + AL +WL I L ++ ++ +RLESD+ LV Sbjct: 693 NNG-RSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLADNNGGDNRAIRLESDEDLV 751 Query: 737 QIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA 792 +IVT+H SKGL+YPLV+ PF + Q + + E + + + Sbjct: 752 KIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQLSEDEQKQYAD 811 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG 852 E +AE LRLLYVALTR+ ++ A T+ + L L++ G PQD+ Sbjct: 812 EEMAERLRLLYVALTRAEEQLNIYAA----------YSTNTADTPLAYLIE-GSPQDSRE 860 Query: 853 LRTCIEALCDDDIA-------------------WQTAQTGDNQPWQVNDVSTAELNAKTL 893 A D IA T ++ N TAE A ++ Sbjct: 861 TVRQTYAQEKDGIAMLKRNWRRLADNAPAGTDFVFTEDAPPPAAYRGNADQTAEFAANSI 920 Query: 894 QRLPGDNWRVTSYSGLQQR---GHGIAQDLMPRLDVDAAGVASVVEE-----PTLTPHQF 945 R TS++ L + G +D P LD V ++ E ++ H F Sbjct: 921 PERGFRFVRHTSFTTLSRHTQTPDGSEEDACPSLDAAETSVPAMPSETPTASDGISIHNF 980 Query: 946 PRGASPGTFLHSLFEDLDFTQPV--DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN 1003 P+G G LH + E+ F Q ++ +KL+ GFE W P + E A + PL Sbjct: 981 PKGTQAGLCLHEILENFKFGQAAAGQETFITDKLKKYGFEEIWLPAVAEMAEACQKTPLT 1040 Query: 1004 ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL----IRQFDPLSAGCPPLEFMQVR 1059 LS + + + EM F L + + D IR + A L+F V Sbjct: 1041 GA-YGLSDILSECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVN 1099 Query: 1060 GMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 G L GFID+V + +G ++DYKSN LG D+SAYTQQAM A+ H Y LQ +Y +A Sbjct: 1100 GFLNGFIDMVCQDPDGNICVIDYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAA 1159 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALM 1168 RY + R V YLFLRG+D + G++ +A + + Sbjct: 1160 ARYFKLRGQPPAAVS----VRYLFLRGLDGKGG--GVWRWDIDADTLEQI 1203 >UniRef50_Q057F5 Exodeoxyribonuclease V, b chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F5_BUCCC Length = 1167 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 323/1174 (27%), Positives = 620/1174 (52%), Gaps = 16/1174 (1%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ +P G LIEASAGTGKTF+I YLRL+L +G ++ P+ ++++L+VTFTE Sbjct: 5 PLNTKEIPHFGITLIEASAGTGKTFSIIIFYLRLILNIGIKKSYSSPIPIKKILIVTFTE 64 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 A EL+ R+ I +L + + + +EI D + ++ L A++ +D+ + Sbjct: 65 TAKNELKERLYKKICQLYYMSINKNYYVKDLKDFKKEIKDFKKISKLLKKAKKNIDQINI 124 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIH F +++L F Q +I + ++++A DFWR++ Y EI +++F+ Sbjct: 125 YTIHSFFRKILIEQKFLCKKKIYQNIITNIKKIQFEATKDFWRKYVYYQNIEIIKLIFKK 184 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 WK P L + I ++ IK +L ++ I+ I+ K+ W+ ++ L Sbjct: 185 WKNPLELFKHIYIWISQIKIKIKHDFKKKSSLIKKYNLIIKLINKAKKTWKIDKKKIKFL 244 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I+ ++++K N+ W KI W+E++T Y +P+ L+ F K + Sbjct: 245 IKKIYLNKKKNNKKKIKIWCKKIQIWSEKKTIKYSVPKILKHFI-------LKKIKKKKE 297 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 + F I ++ I AL +I + + ++K+ + L F+D+ + + ++ + Sbjct: 298 YLFFLYIKKIFFYYKLFFKYFIYLALKKIPKLIKKKKKMKKGLEFNDLNTIMWKEIKKKK 357 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 + ++ ++MIDE QD D Q+ IF +I+ + + +L+LIGDPKQ+IY+FR ++ Sbjct: 358 INYKKNIL-KKYTISMIDECQDIDNYQFNIFYKIYKKKKKKSLILIGDPKQSIYSFRNSN 416 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 IF Y+K + ++ + L N+RS+ M S+N LFS+T + F+F++I F P + KN Sbjct: 417 IFLYLKYKKKIQKCFFLKKNFRSSINMTKSINTLFSKTKNPFIFKKINFQPSLANKKNNK 476 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL-QAGQRGEALLMNGDD 545 + V TQPA+K ++ +Y + ++++CA I + L + ++ Sbjct: 477 NKLVINNITQPALKFIFKNKKTINKNEYFTWISKMCAYSINNLLSNKSTKKSFIIFKNKK 536 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 R ++ +DI++LV+++ EA ++ I ++Y S + ++F+T EA+E+L++++++ Sbjct: 537 KRSIKNTDIAILVKNKYEANIIKKEFKKYGIKTIYTSEKKNIFQTKEAKEILFIIESLSD 596 Query: 606 PERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM 665 L+ L T + N DI ++NN + + ++++ Y IW+K+ + M + ++ Sbjct: 597 LSNILKLQKLLMTKIFSKNIYDIYSINNKKKTYSSLIKKLKKYYLIWKKKNIFFMFKKII 656 Query: 666 SARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHIL----EPDSN 721 + + + +I+ + E+L+E ++++ L WL + IL E + + Sbjct: 657 FDFCFQKKNIKLKINNINIYNIIQLCEILEEKNKSIKNKFLLTIWLRKKILKKNIEKNKS 716 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 + Q + +DK ++I+TI+KSKGLEYP++W+PF ++F+ ++ + + + + +++L Sbjct: 717 KNLIQNKNINDKKFIKIITIYKSKGLEYPIIWIPFFSSFQKKKNQIIYCKKTLKKIVNLK 776 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 +++ E ERL+ED+RLLYVA+TRS+ HC +G+A + ++ +K T+ H++ LG L Sbjct: 777 NEKKNIISLEKERLSEDIRLLYVAITRSIIHCCIGLAVIKNKKNEK--YTNFHKNCLGYL 834 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 +QKG+ + + + L + + + + +++ +W Sbjct: 835 IQKGKKKKFKNFKKNLYDLQIPGLIEIKKSNKVKKKFFKKKKRKKKNIFFFNKKIKQYSW 894 Query: 902 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED 961 TS+S + + + + + + + + H FP G G +LH +F+ Sbjct: 895 TNTSFSKIIKYNQLKKNIINIKKENFINKINYNKKTSQINLHSFPLGKEFGIYLHDVFKK 954 Query: 962 LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 + F + + +K F + L WI L+ PLN +SL ++ + Q E Sbjct: 955 IKFFKTKKTKKILKKTNFLSFSNILIKKLYLWINIFLKFPLNNENLSLEKIRKKEHQKET 1014 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 +F +PI + + + + +I++FDP+S C + + G+L G IDL+F + +YY+++Y Sbjct: 1015 KFIIPIKKKINIKKFNLIIKKFDPISKKCSNIFYKNFFGILNGSIDLIFLWKKKYYIIEY 1074 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSNWLG DSS Y + + + +RYD+QYQ+Y+L LH YL+ ++ +Y+Y HFGG+ YL Sbjct: 1075 KSNWLGPDSSYYNSKNIKKEIIKYRYDIQYQIYSLVLHCYLKKKLKNYNYNTHFGGIFYL 1134 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 FLR D ++ G Y +P+ LI ++ + G Sbjct: 1135 FLRAFDNKN-NTGTYFIKPSYLLIKNLENLIYGN 1167 >UniRef50_D1N1Q3 Exodeoxyribonuclease V n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q3_9BACT Length = 1235 Score = 751 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 353/1264 (27%), Positives = 559/1264 (44%), Gaps = 124/1264 (9%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V E LD L PL+G LIEA+AGTGKT+ I L +R +L R + +E+LL Sbjct: 1 MTPVQE-LDSLNCPLRGLFLIEAAAGTGKTYNIQNLVVRAVL--------ERDIPIEKLL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETT-----DNPLYERLLEEIDDKAQAAQWLL 115 VVT+T AA AEL GRIR + A + + L R LE + + + L Sbjct: 52 VVTYTRAAAAELAGRIRQVLSGTLAALEKRLPPESGREAQLVARALETLTS-EECRKRLR 110 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 A D A V TIHGFCQ++L NAFESG+LF ++L D + L + D +RR YP Sbjct: 111 TALFDFDAATVTTIHGFCQKVLRENAFESGILFSRELDNDCAELLEKLADDLYRREFYPD 170 Query: 176 PREIA-----QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 ++ + + L R + VI++ A+ ++ Sbjct: 171 DDARHSALRQALLRQAGYTAERLAELALRRIARPDLVIRSNAEAGTDPAADLEELAEGFG 230 Query: 231 TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 ++ R+ + E L + + F+ + ++I + + + + + L F+ Sbjct: 231 ELR---REELPEC--LANFPYLFNKPFSGKDFDRFIAAYEKFRADGVPTGEFLQLLAAFT 285 Query: 291 QRFLEDRT---KAGGETPRHPLFEAIDQLLAEPLSIRDL----------------VITRA 331 L + K G + E + LA L +L V+ A Sbjct: 286 PEALTEALCARKKSGAPSQFAALEQRQEALAGILEQSELQRIFQLAELAPRFGDTVLLAA 345 Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 + E+ R K++ FDDM+ + AL E L +++ ++P+ ++DEFQDTDP Sbjct: 346 VEELLAAYDRAKQQANLQTFDDMIRDVHRALM-EPESRLQRSLQQQYPLGIVDEFQDTDP 404 Query: 392 QQYRIFRRIW-------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV----HAH 440 QY IF++I+ P L L+GDP+QAIY FRG DI TY +A +V A Sbjct: 405 IQYAIFKKIFIDPAEPGGAVPAATLFLVGDPRQAIYGFRGGDIDTYNRAADDVFRYGGAK 464 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 YTL N+RSA GM+ +VN LFS+ F I + + K + + + Sbjct: 465 YTLTRNFRSAAGMIEAVNLLFSRHASPFASERITLPEISAPAKPE----LGNRPESALLV 520 Query: 501 MWLMEGESCGVGDYQSTMAQVC---AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + + D + C A +I + L + R +R DI++L Sbjct: 521 AGREDRRPLRITDLPDSDGDACLAAAVEIANALLCDDTLHIPPRSDTPERRLRPGDIAIL 580 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 V+ EA ++ L IPSV+ SN +SV+ + EA+E+L +L A+ PER + +ALA Sbjct: 581 VKKWSEAYALKPLLAARMIPSVF-SNSESVYRSDEARELLTVLAAIAAPERSGEVLAALA 639 Query: 618 TSMMGLNALDIETLNNDEHAWDVV--VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 T + G ++ L ++E + ++ F R+ WR + M L+ +I Sbjct: 640 TGLGGCGLAELLRLGSEEGSNELAEHQTAFARLRREWRPETFIVMFSGLLKYFDIPARFA 699 Query: 676 ATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHIL-EPDSNASSQQMRLESDK 733 GGER+L ++ + +LLQ+ ++ + S +AL+ +LS + D ++ + LESD+ Sbjct: 700 RQEGGERKLANLHQLGDLLQQESSRRKLSINALLNFLSDAVEGRIDDSSDEVKQILESDR 759 Query: 734 HLVQIVTIHKSKGLEYPLVWLP----FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDL 789 V+I T+H SKGLEYP+V LP F T R F+ D H V +L+AA + Sbjct: 760 DSVKITTVHSSKGLEYPVVILPSLFRFATGSRSPGGNFHEDGH---LVYELHAAGSMNER 816 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ------ 843 E E+LRL YVALTR+ + C + K G + S L L++ Sbjct: 817 EHDEATMENLRLAYVALTRAKYRCHVLWG--------KDGASSYCNSPLDWLVKFREATP 868 Query: 844 --KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL-QRLPGDN 900 P +R L ++ +T Q ++ + +L R+ D+ Sbjct: 869 EEAAHPTRFLKMRKDAPRLLPVELEEKTLPVS-TQVYRPELDRSRQLAPWEWNHRVLRDH 927 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE-----EPTLTPH-QFPRGASPGTF 954 +R+ S+S L G D D + + P P P G + G Sbjct: 928 YRIASFSSLSPAASGRLDPADDGADHDDSQPEEQLPALSETAPEKNPALALPGGKAFGNA 987 Query: 955 LHSLFEDLDFTQPVDP--NWVREKLELGGF--------ESQWEPVLTEWITAVLQAPLNE 1004 +H + E+LDFT P D KL G + + + + +APL++ Sbjct: 988 VHEILEELDFTAPFDTLRELAARKLRFYGLLAGDGSGADRERLDAVAAMVERTRRAPLHD 1047 Query: 1005 T---GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF---DPLSAGCPPLEFMQV 1058 G +LSQ+ ++ E+ F ++ L+ + + P Sbjct: 1048 AQGDGFTLSQIGRADRLSELRFLFGFGRKFRTGEIAELLGDYAEREFRFTDWPEWNTPVD 1107 Query: 1059 RGMLKGFIDLVFRH----EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 G L GFIDLVFR RY L+D+K+N L + + +T + AAM Y LQY Y Sbjct: 1108 GGFLNGFIDLVFRRRTASGDRYSLVDWKTNRLDGEPANFTPAQLPAAMSHSYYFLQYLFY 1167 Query: 1115 TLALHRYLRHRIADY---DYEHHFGGVIYLFLRGVDKEHPQQ--GIYTTRPNAGLIALMD 1169 T+AL ++LR + DY FGGV YLFLRG+ P G++ TRP+ L+ ++ Sbjct: 1168 TVALVKFLRRTFGKFDAEDYRDRFGGVYYLFLRGIRAGQPPNGDGVFFTRPDFELVTALE 1227 Query: 1170 EMFA 1173 + + Sbjct: 1228 ALIS 1231 >UniRef50_B2I7Y5 UvrD/REP helicase n=11 Tax=Xanthomonadaceae RepID=B2I7Y5_XYLF2 Length = 1243 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 375/1277 (29%), Positives = 549/1277 (42%), Gaps = 156/1277 (12%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70 L LPL G RLIEASAGTGKTFT+A L RL++ R + +L VTFTEAAT Sbjct: 9 LTLPLHGVRLIEASAGTGKTFTMATLVTRLVV--------ERGWRIGHILAVTFTEAATQ 60 Query: 71 ELRGRIRSNIHELRIACLR--------------------ETTDNP--------------- 95 ELR RIR + + D P Sbjct: 61 ELRTRIRERLILAARLVPQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVTNSASPEPP 120 Query: 96 -------LYERLLEEIDDKAQAAQ-WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGML 147 + L D+ A L A ++D AA+FTIHGFC R+L +A +G Sbjct: 121 DVVLTLQILRTHLAATDETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQS 180 Query: 148 F-EQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAP 206 F L+ + L ++ AD WR+ P I ++ G L +D+ L Sbjct: 181 FIPPTLLASDRDLLHELAADIWRQEIAD-PEAIQDLIHLWPAGAPMLAQDLTDLLYQPHL 239 Query: 207 VIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWI 266 L A + T++ W+ L + + ++ + +S +A + Sbjct: 240 SPAPSLAAPVVLPD--AALAVAETTLRHLWQTEGAALRSALHTALEEGVLNKKSYKADAL 297 Query: 267 DKISAWAEEET---NSYQLP-ESLEKFSQRFLEDRTKA--GGETPRHPLFEAIDQLLAEP 320 + + W E + N+Y P L+ + L+ T G +P P+ EA+ L Sbjct: 298 NDLWDWMERWSLAPNAYPEPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSEAVQHYLDAL 357 Query: 321 LSIRDL-------VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAA 373 SI + R A R + KR+R +DD++ R+ AL L + Sbjct: 358 TSIETARAQHRLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRS 417 Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-------ALLLIGDPKQAIYAFRGAD 426 +R ++ +A++DEFQDTD Q+RIF ++ AL LIGDPKQAIY FRG D Sbjct: 418 LRQQYRMALVDEFQDTDVAQWRIFHHVFGDTEHAHTADLTPALFLIGDPKQAIYGFRGGD 477 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD-AFMFREIPFIPVKSAGKNQ 485 + TY+ A + L+ N+RS P ++ ++ L++Q D AF+ I F PV+ + Sbjct: 478 VHTYLAAAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGTHCR 537 Query: 486 ALRFVFKGETQPAMKMWLME----------GESCGVGDYQSTMAQVCAAQIRDWLQAGQR 535 G PA+++W + ++ C I WL Q Sbjct: 538 DTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADAQT 597 Query: 536 GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 G ALL D RPV A DI+VLVRS +EA ++ AL IP+V + + S+ T EA E Sbjct: 598 GRALL----DGRPVGAGDIAVLVRSHREATLMQQALARAGIPAV-AAGKRSLLTTDEANE 652 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKR 655 L LL A++ E LR+AL+T ++GL A I T ++D A + +R+ Sbjct: 653 ALALLLALLHSADEGRLRTALSTVLVGLTAETIATFDHDSVASRHWQRQALHWRERLHSG 712 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI 715 G + +L L + A LL+ GERRL++ L + ELLQ+ + H LV WL++ I Sbjct: 713 GPLGLLTDLCALH--AARLLSLFDGERRLSNYLQLGELLQQVHLRALGLHGLVDWLARRI 770 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDR 771 E ++ +Q +RLESD VQIVT+HKSKGLEYPLV+LP++ R HD Sbjct: 771 AEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFLPYVAIGRSHAGPGRYCVVHDA 830 Query: 772 HSFE-AVLDLNAAPESVDLAE----AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGD 826 L+ AE E+ AE+ RLLYV LTR+ + + Sbjct: 831 QQGRCLHWCLDKQAPEWQRAETAWKQEQRAEEARLLYVGLTRAKHALWIATGTFYQ---- 886 Query: 827 KKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTA 886 ++AL LL + A I + TA P + + Sbjct: 887 ------TERTALWPLLGDPQAVPA-----------QPGIVFDTAVPPAILPRLTPEQPHS 929 Query: 887 ELNAKTLQR-LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ- 944 A+T QR +W V S++ L A D R+ G P Q Sbjct: 930 VPPARTAQRGALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAWPQDAIQQP 989 Query: 945 FPR----------GASPGTFLHSLFEDLDFTQ-----------PVDPNWVREKLELGGFE 983 P G G LH +FE DF + + + L G+ Sbjct: 990 LPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVPVPATERGVLLQALRGSGYV 1049 Query: 984 SQWEPVLTEWITAVLQAPLN---ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 ++ +T ++ L GV L + ++ E+EF I + L L+ Sbjct: 1050 AEDVEAGIALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVI-QATAVDALLALL 1108 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 L ++ G++ G IDL++RH GR+Y+LDYKSN L YT ++ Sbjct: 1109 HDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRL----PDYTPAHLSV 1164 Query: 1101 AMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQ-QGIYTT 1158 AM YDLQ +YT+ALHR+LR R+ D YDY GG+ YLF RG+D P G+YT Sbjct: 1165 AMTDSEYDLQALIYTVALHRWLRFRLRDAYDYARDMGGIRYLFCRGMDATRPNAAGVYTQ 1224 Query: 1159 RPNAGLIALMDEMFAGM 1175 LI +D MF+G+ Sbjct: 1225 SFAPALIEAVDAMFSGV 1241 >UniRef50_C4GIJ8 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIJ8_9NEIS Length = 1220 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 362/1261 (28%), Positives = 560/1261 (44%), Gaps = 143/1261 (11%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 L+PL +P+ G LIEASAGTGKT+ IAAL+ RL+L +VE++LV Sbjct: 1 MTTPAPLNPLTIPVHGTHLIEASAGTGKTWNIAALFTRLVL--------LEQQSVEKILV 52 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRET-------------------TDNPLYERLLE 102 VTFT+AATAEL+ R+R+ + + A R D+ L+ L + Sbjct: 53 VTFTKAATAELKTRLRARLDQALTALKRTPNAQTQPEILRQNSLDDKNRPDDFLFNLLSQ 112 Query: 103 EIDDKAQAAQWLLL--AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL-L 159 + ++Q L L A D AA++TIHGFCQR+L AF F QL ED + Sbjct: 113 ALASESQDRLQLRLTAAISNFDNAAIYTIHGFCQRILQDFAFYCQAPFNIQLNEDPNDNP 172 Query: 160 RYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA 219 A D+WR P P + AQ+V++ + P+ L+ ++ YL P ++ P+ +A Sbjct: 173 NLTAIQDYWRTQIAPNPVQ-AQLVYQHNQTPEKQLQALSPYLAR--PYLQFRQPESSHIA 229 Query: 220 SRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNS 279 Q V Q L ++++ +N + ++ ++ + + Sbjct: 230 QTQQQFQQAWQHVCAQLPQIQAAFWQL--HPHLNKQSYNAARCEDRFAQLHQFSGCPSPA 287 Query: 280 ---YQLPESLEK---FSQRFL------EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV 327 L ES F+ FL + ++K + P PL + L A + + + Sbjct: 288 TIWQLLTESKHTQAIFTAEFLQSKANQDKKSKQKIQLPAEPLALINNTLGALATAAQRCI 347 Query: 328 ITR--ALAEIRETVAREKRRRGELG--------FDDMLSRLDSALRSE--SGEVLAAAIR 375 + AL ++ + R + E FDD+L + AL E + LA A+ Sbjct: 348 QAQEQALIQLAHNIIHYLRTQNEANKKTSPSRQFDDLLLDVYHALSPEKPHAQALARALS 407 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE----------TALLLIGDPKQAIYAFRGA 425 + A+IDEFQDTDP QY IF+ + P TA ++GDPKQAIY+FRGA Sbjct: 408 ANWQTALIDEFQDTDPLQYAIFQAAFMQPPRQPENKCNQNKTAFYMVGDPKQAIYSFRGA 467 Query: 426 DIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 DI+ Y+ A + +TL N RS +++++N LFS+ + F +IP+ P ++A Sbjct: 468 DIYAYLAAAEHIPPANRHTLSQNHRSHAALIHAINALFSR-PNPFALDKIPYHPARAARS 526 Query: 484 NQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 L GE + + + AQ CA +I L A +G+ Sbjct: 527 QSKLP---SGEAPLRLTWLNQDPTADDSDTLTQRAAQWCAQEIAVTLHAHAQGKT----- 578 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 P+ A I++LVR+R+E ++ L I SV LS RDS++ E Q + L+ + Sbjct: 579 ----PISAGQIAILVRTRKEGTLMQRQLKTHHIQSVLLS-RDSIYAEEETQAVYALISFI 633 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRA 663 + P+R L L+ + AL I+ LN +E + + Q W++ GV L+ Sbjct: 634 LNPQRTQHLIYLLSGCLYNHTALQIQQLNQNEAQLTQWTDAANQAAQTWQQHGVYTALQQ 693 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA- 722 + LL+ +R LT++ I E+L + + AL +WL Q I ++A Sbjct: 694 FLRQFQAETTLLSQRN-DRTLTNLHQILEILAAQDEKGQPPSALQQWLGQQIQASQNHAN 752 Query: 723 --SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY---HDRHSFEAV 777 +RLESD++LV+IVT+H +KGL+YP+V+ PF+ R Q+ + H H + + Sbjct: 753 PQDHALLRLESDENLVKIVTMHAAKGLQYPVVYCPFVWKARNQQPPEWQIIHQNHQAQLI 812 Query: 778 LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 A+ E+ +EDLRLLYVALTR+ ++ +A + S Sbjct: 813 HKTQLTDSDQQQAQTEQRSEDLRLLYVALTRAEEQLNIYIASYPQ----------TENSP 862 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDI--AWQ--TAQTGDNQPW-------------QV 880 L L+Q +P+ + L +WQ AQ ++ W + Sbjct: 863 LAYLIQHQQPEKGKSKKDEYAHLQAQAYRQSWQNFIAQHPEHIQWHDTLTLPTYTGSLKT 922 Query: 881 NDVSTAELNAKTLQRLPGDNWRV---TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE- 936 ++ T E +P ++R TS++ L + + P + + Sbjct: 923 SEPQTNEPTTYRATPIPPRSYRSPQHTSFTALSRHSTTQPTEHTPLDPSEQTTQPQNPQG 982 Query: 937 ----EPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW--VREKLELGGFESQ-WEPV 989 + T QFP+G + G LHSL E F QP N ++ L+ SQ W+ Sbjct: 983 SLKPDDPPTIAQFPQGTAAGICLHSLLERYPFAQPGRQNLPLIQTTLDQHNINSQQWQDT 1042 Query: 990 LTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL--- 1046 + + I PL SLS L +N E F L + L T Q L Sbjct: 1043 IAQLIEDTRHTPL-LPRTSLSTLPPQNILTEFGFLLH-TRNFTLGSLKTWFAQHSKLPPE 1100 Query: 1047 -SAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 +A L F V+G + G+IDL+ + E G +LDYKSNWLG S YTQ A+ A+ Sbjct: 1101 ITAAAQNLSFRDVQGYINGYIDLLAQTETGDTLILDYKSNWLGNSPSDYTQAALNQAIAQ 1160 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIY-TTRPNAG 1163 H Y LQ LY +A RYL R A H + YLFLRG+D G++ P + Sbjct: 1161 HHYALQALLYAIATARYLTSRNAQPQTIH----IRYLFLRGLDG-ITSNGVWQWDIPTSS 1215 Query: 1164 L 1164 L Sbjct: 1216 L 1216 >UniRef50_C7PDT4 Exodeoxyribonuclease V n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT4_CHIPD Length = 1152 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 346/1207 (28%), Positives = 558/1207 (46%), Gaps = 118/1207 (9%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + + +PLQ LIEASAGTGKT++IA L LRL+L L+++E+L+VTFT Sbjct: 8 QDFNAATVPLQDSNLIEASAGTGKTYSIAILVLRLVL--------ENGLSIKEILMVTFT 59 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK---AQAAQWLLLAERQMD 122 +AA AEL RIR + + T + RL+EE ++ A Q L A +D Sbjct: 60 KAAVAELEERIRLFVRTAYKISQGQETRDENIFRLVEEAVERNGLAAVQQQLRDAVLFLD 119 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 E AV TIH FCQ+ LN AFE+ LF ++I+D L + FWR++ L + + Sbjct: 120 ETAVLTIHSFCQKTLNEFAFETDQLFGAEMIQDTKTLIAEEVQKFWRKYVTTLHIRLLEK 179 Query: 183 VFETWKGPQALLR---DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 V+E P + +N ++ G+ P + + ++ DA Sbjct: 180 VWE----PDMMEGINVALNEHMGGKRYYAYQPGKRYAIKQKEQEEWLHQL--------DA 227 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 + + A +E +D N + + + + +A+ T + E F + + R Sbjct: 228 IDDKKAAVEKILMDY-VINERETLRGLCEGNRYAK--TALLPCMDDPELFIKTVADKRNS 284 Query: 300 AGGETPRHP-LFEAIDQLL---AEPLSIRDLVITR----ALAEIRETVAREKRRRGELGF 351 A + P + +D++ E + VI+R A+ EI V K+R L + Sbjct: 285 AKYISTLLPDMLAHMDEVAVVDEERKGVVQQVISRLYCFAIEEIAAGVKGFKKRNNLLSY 344 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLL 411 DDM++ L +L + L +R ++ +DEFQDTD QY IF + + T L Sbjct: 345 DDMITNLHKSLVDRNNPKLEEVLREKYKAVFVDEFQDTDRMQYEIFEKAFGES--TILFY 402 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF- 470 IGDPKQ+IYA+R ADIFTY KAR+ V Y ++ N+RS+ + ++N+ F F Sbjct: 403 IGDPKQSIYAWRKADIFTYFKARASVQHVYGMNRNFRSSEPFIAAMNQFFLPVPGFDTFY 462 Query: 471 -----REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQ 525 I +I V S N E + ++ + +++ AAQ Sbjct: 463 FEGEGSAINYIKVDSPESNTKGLLFRGDEPDVPISVF--------NTSNSTELSESVAAQ 514 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 + L + GE + + D+ RPV+ SDI +LVR+ ++ +V+ L L IP+V + + Sbjct: 515 VAALL---RSGEYFIGDEDERRPVKPSDIGILVRTGRQGREVKAQLARLGIPAVTVDDAK 571 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 V ++ EA +L+L++A++ P +++ AL + GL + TL++ +V + F Sbjct: 572 -VLQSEEATYLLYLMEAMLAP-DRSSINRALLSPFTGLKLESVLTLDD-----EVTLGLF 624 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLA--TAGGERRLTDILHISELLQE-AGTQLE 702 Y+ W++ G+ + ++ N+ LL T GER ++++ ++EL+ + + Sbjct: 625 GNYKNRWQQDGIYTAMMDFVTDFNVRNVLLHAHTESGERIISNLFQLTELVHQIQSRKNL 684 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV 762 S LV WL + I + + R+ESD+ V IVTIHKSKGLEY +V P++ Sbjct: 685 SMTELVSWLKRGIDGMATEGDEYEQRMESDEEAVNIVTIHKSKGLEYKIVMAPYLDFVEN 744 Query: 763 QEQAFYHDRH----SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 + AF+ R + V E + E+ RLLYVA+TR V+ C + Sbjct: 745 KYIAFFSFRDPLTGDYVGVEKKRMTDEQQASYARQAEQENRRLLYVAITRGVYKCFVFRN 804 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 ++ LL E AA I + Q G+ Sbjct: 805 NYHKKST---------------LLTFLEALVAAAPSPDIIRFEEGMPVAPEQQAGN---- 845 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEP 938 +V ++ + + L NWR SY+ L + L A+ E Sbjct: 846 KVLPLAPVDPDMPVRFVLKEQNWRKMSYTMLAAKAEH-------NLRTRASQKEDPYE-- 896 Query: 939 TLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELG--GFESQWEPVLTEWIT 995 T H RGA G LH LFE+++F++ W+ E + G + + P+L + + Sbjct: 897 TFIFHTLKRGAKTGNLLHFLFENINFSEDSRWEKWITETVRRFVPGQQDLYGPMLRQLLE 956 Query: 996 AVLQAPLNETG--VSLSQLSARNKQVEMEFYLPIS-------EPLIASQLDTLIRQFDPL 1046 VLQ + G L+ + + E EF P+S L + ++R+F Sbjct: 957 HVLQTDITVDGRTFPLAAIIWHKRIPEFEFDFPVSAFFPDMLNGLSDDRTSVVVRRFHEQ 1016 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 + ++ G++ G +DL F HEGRYY+LD+KSN+LG YT A++AAM + Sbjct: 1017 GS-------SELEGIMNGKMDLFFEHEGRYYILDWKSNYLGGTPEDYTPTAVSAAMNENN 1069 Query: 1107 YDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIA 1166 Y LQY +YTLA +YL R+ +DYE FGGVIY F+RG+ K GI+TT+P I Sbjct: 1070 YHLQYLIYTLAAKKYLESRLHAFDYETQFGGVIYCFVRGIRK-GQSTGIFTTKPPLSKIL 1128 Query: 1167 LMDEMFA 1173 ++ + Sbjct: 1129 QLESSLS 1135 >UniRef50_B5EAR6 Exodeoxyribonuclease V, beta subunit n=5 Tax=Geobacter RepID=B5EAR6_GEOBB Length = 1130 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 354/1096 (32%), Positives = 507/1096 (46%), Gaps = 88/1096 (8%) Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 FTI G R++ F+ + E + + + + A+ F T Sbjct: 27 FTIAGVYLRLVLEQKFDVSRILVVTFTEAATKELKERIRNKLKE---------AENGFLT 77 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 L+ + + Q + + + A I ++ +D E +L Sbjct: 78 GATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDE--AAIFTIHGFCQRMLQDNPFESGSL 135 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEET------NSYQLPESLEKFSQRFLEDRTKA 300 ++ + + A+ +I+ + + E + PESL K QR D A Sbjct: 136 CDTELVTDQGKILMEIAQDYWRINCYGQPEERIAAAGAAKVSPESLLKLVQRVCGDPNAA 195 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 P E D L D +R + + KR + FD L Sbjct: 196 VIPDPPADANELDDWLQGLKRGFFDY--------LRAELPKRKRLKNLRSFD-DLLLDLH 246 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 A L IR R+ A+IDEFQDTDP Q+ IF I+ E LIGDPKQAIY Sbjct: 247 AALLRPASTLPRLIRERYQAALIDEFQDTDPLQFAIFDAIYPVGHEAPFFLIGDPKQAIY 306 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 +FRGADIF YM A +TL N+RS G++++VN LF+ + F++ +I F V++ Sbjct: 307 SFRGADIFAYMGAAQATKERHTLLQNFRSEAGLIDAVNALFASRELPFLYPQIGFNKVEA 366 Query: 481 AGKNQALRFVFKGETQPAMKMWLME----GESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 A K ++ R V G+ + +K+WL G+ GD + + AA+I L+ G G Sbjct: 367 APKEKS-RLVEAGQRKAPLKLWLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGADG 425 Query: 537 EALLMNGDD----------ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 + + R V DI+VLVR+ ++A ++ ALT IPSV S + Sbjct: 426 KLTVEELRKDAEEGSENWVQRAVEPRDIAVLVRANRQAKLMQRALTHRGIPSVLCS-AGN 484 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 +FE+ EA E+L LL AV P E+ LR ALAT ++G++ ++ L +DE W+ ++EEF Sbjct: 485 LFESDEAAELLRLLSAVAQPGHESLLRGALATDLVGVSGTELARLMDDEKGWEEILEEFR 544 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEH 705 Y W M M M R + + LLA GERRLT++LH E + +A Sbjct: 545 SYHDTWNSGSCMSMALQFMEKREVRKRLLAEPMGERRLTNLLHAIETIHQAQVNERLGME 604 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN--FRVQ 763 A++ WL+ I E + ++RLE+D+ VQ+VTIHKSKGLEYP+V+LPF Sbjct: 605 AVISWLACRITE-EPKKDEYEIRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEYAGKD 663 Query: 764 EQAFYHDRHSFEAVLDLNAAP--ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 E A +HD VLD+ + E A E LAE LRLLYVALTR L Sbjct: 664 EGALFHDEDG-RVVLDIGSEQMGEHKAQAAREALAESLRLLYVALTRGKHRTYLTWGVFK 722 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEP-------QDAAGLRTCIEALCDDD---IAWQTAQ 871 D SAL LL GE A +R ++ L I Sbjct: 723 ----------DAGDSALHYLLHPGETPVKGQVTLSDADIRKRLDTLAASSAGRIEVLDLP 772 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV 931 D P++ +D +L +WRV S++ L H A +L R + Sbjct: 773 AADLAPYRAHDKKAPDLAPLPFTGAISRDWRVASFTSLSSHKHHTA-ELPDRDEGSPVEE 831 Query: 932 ASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPV 989 V + FP+GA G FLH +FEDLDFT+ + V+E+L+ GF W Sbjct: 832 RPVHDVEPTGIFAFPKGAKAGIFLHKIFEDLDFTRVGEQLSPLVKEQLDKHGFAPDWSQA 891 Query: 990 LTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD----- 1044 + + + VLQAPL + ++L+Q+ + EMEF+ P+S + + +L +F Sbjct: 892 VRDMVQNVLQAPLGDGEIALAQVGLERRLTEMEFFFPLSH-VTSDRLREAAARFTAGHGT 950 Query: 1045 --------PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 L+ L F V+GML GFIDLVF H GRYY++D+KSN LG Y Q Sbjct: 951 AGVAGLPVDLADLFSRLSFAPVQGMLLGFIDLVFEHGGRYYIVDWKSNHLGNTPGNYGQA 1010 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIY 1156 A+ M+ + Y LQY LYT+AL YLR RI YDY+ HFGGV YLFLRGVD G+Y Sbjct: 1011 ALKKEMEENFYPLQYLLYTVALDNYLRLRIPGYDYDRHFGGVFYLFLRGVDGT--GNGVY 1068 Query: 1157 TTRPNAGLIALMDEMF 1172 RP LIA + E+ Sbjct: 1069 ADRPPRELIAHLAEVL 1084 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 121/223 (54%), Gaps = 8/223 (3%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + D L PL G LIEASAGTGKTFTIA +YLRL+L + V +LVVTFT Sbjct: 2 KRFDLLHTPLAGRNLIEASAGTGKTFTIAGVYLRLVL--------EQKFDVSRILVVTFT 53 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAAT EL+ RIR+ + E L TD+ L E LL+ D ++A + L A R DEAA Sbjct: 54 EAATKELKERIRNKLKEAENGFLTGATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDEAA 113 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQRML N FESG L + +L+ D+ + + D+WR +CY P E Sbjct: 114 IFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIAQDYWRINCYGQPEERIAAAGA 173 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR 228 P++LL+ + R + PP D Q + R Sbjct: 174 AKVSPESLLKLVQRVCGDPNAAVIPDPPADANELDDWLQGLKR 216 >UniRef50_A7NB27 Exodeoxyribonuclease V, beta subunit n=21 Tax=Francisella RepID=A7NB27_FRATF Length = 1217 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 344/1291 (26%), Positives = 574/1291 (44%), Gaps = 201/1291 (15%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ + LQG +IEASAGTGKTF I LY+RLLL + L +LV+TFT+ Sbjct: 3 NLNANTITLQGRHIIEASAGTGKTFNITKLYIRLLL--------EKKLLPSNILVMTFTK 54 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AT E+ GR+ I ++ + E + + + L + ++DEAA+ Sbjct: 55 DATQEIIGRVEKEIRDVLASYTDEKKE------------SDKENYKHLKRSLLEIDEAAI 102 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 FTIHGFC+++L+ AF SG+ + + D S + + DF+R+H + Sbjct: 103 FTIHGFCKKVLSEQAFASGIEMDVSMEVDTSDIFQKVVEDFFRKHINKSETNFGYLQIYK 162 Query: 187 WKGPQALLRDINRYLQGEAPVI-KAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 P+ L D+ ++ ++ K DE + Q+ I+ D V + Sbjct: 163 LHTPEKFLDDLENIIRSNYEILTKQAISLDEFKILKKQQLELFINN-----HDIVDDFLY 217 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 + ++ + ++ W + + + PE++ + D K + Sbjct: 218 KLGKGEPQGKRVDE------YHRVLEWLKLDNQTL-FPENI-----SIITDGRKISAK-L 264 Query: 306 RHPLFEAIDQLLAEPLSIRDL----VITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 P+F + +L I+ I +A +IR+ A+ K ++G L FDD++++L + Sbjct: 265 IKPIFIGVKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKDQKGVLDFDDLITKLCQS 324 Query: 362 LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA------------- 408 ++ L ++ ++PVA+IDEFQDTD +QY I I+ + ++ Sbjct: 325 VKK--SPELVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHKGKNLLTNGL 382 Query: 409 ----------------------LLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLD 444 LL+IGDPKQAIY FRG DIFTY+KA+ +++D Sbjct: 383 NLKDTRLREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEENQWSMD 442 Query: 445 TNWRSAPGMVNSVNKLF----------SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 TNWRS M+ + N+LF Q I + VK++ F Sbjct: 443 TNWRSTGEMIKAYNRLFYKQDYQSEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFDDN 502 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 +P + E D + +A +I L + V +DI Sbjct: 503 FKPINYFYYEVAEDDNKSDIDTNLALWTVNEITRLLN--------------TQKVAENDI 548 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 ++LV + ++A ++ AL + SVYLS RD+V+ + EA+E+L L++ + E ++ L+ Sbjct: 549 AILVENGKQAKIIQQALQAKNLSSVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608 Query: 615 ALATSMMGLNALDI--ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE 672 AL+TS++G A ND AWD +E+ RQ W K G M + ++ E Sbjct: 609 ALSTSLLGGRADKFISYIDENDVSAWDDEIEKAKSLRQQWHKYGFMAFIMQIIH-----E 663 Query: 673 NLLATAGG-ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 N A ER +T+ILH++EL++ A + + + L++W + ++ S ++RLES Sbjct: 664 NFTQKADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLN--NTATSEGELRLES 721 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPF-----ITNFRVQEQAFYHDRHSFEAVLDLNAAPES 786 D +L++I+TIH SKGLEY +V++PF F Y+D + V + Sbjct: 722 DDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTVYKIGKDDSV 781 Query: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 A+ E + E +RL YVA+TR+ C +GVA + +S L R L + Sbjct: 782 KQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKY----------NNSEKSPLARFLGYQK 831 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE-------LNAKTLQRLPGD 899 D L + D + + + ++S+ + L A + +L D Sbjct: 832 DDDW--LEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYISKLEND 889 Query: 900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF--PRGASPGTFLHS 957 +W + S+S + + Q+ ++D A +F +GA G LH+ Sbjct: 890 SWEMLSFSKISKSK---VQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNILHN 946 Query: 958 LFEDLDFT-QPVDPNWVREKLELGGF-ESQWEPVLTEWITAVLQAPLN------------ 1003 + E DF+ +D N ++E+++ ++ L W+ L+A + Sbjct: 947 VLEHTDFSLGEIDGNLLQEQMDRYKVVAAEDFDNLKLWLEECLEAHIPYIDTSFSSLNES 1006 Query: 1004 ---------ETGVSLSQLSARNKQVEMEFYLPI-SEPLIASQLDTLIRQFDPLS------ 1047 + G L + E EFY P+ +E L + + +++++ L+ Sbjct: 1007 IQYGLFDIKDKGFCLKTIPNSKTLKEAEFYFPVKNENLYKTNILEILQEYRELTKLKTYS 1066 Query: 1048 ----AGCPPLEFMQVR-------------------GMLKGFIDLVFRHEGRYYLLDYKSN 1084 G P + +R GML GFIDL+F +EG++Y+ DYKSN Sbjct: 1067 HSYVGGNLPTNYQDLRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSN 1126 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLR 1144 +LG+ Y QQAM Q+ YDLQY +Y++AL +YLR I Y+YE HFGGV Y +LR Sbjct: 1127 YLGDTLEDYNQQAMQEKNQSSFYDLQYLIYSVALDKYLRQNIESYNYEKHFGGVYYFYLR 1186 Query: 1145 GVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 G+ G+Y RPN +I + +F G Sbjct: 1187 GM---KDGYGVYRARPNLEIINKLASLFNGD 1214 >UniRef50_Q05XZ6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ6_9SYNE Length = 1222 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 337/1274 (26%), Positives = 513/1274 (40%), Gaps = 171/1274 (13%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 +P + PL+ G RL+EASAGTGKTF +A L LRLL + P PL VE+LLVVTFTE Sbjct: 6 FEPNQFPLEPGLRLLEASAGTGKTFALAHLVLRLL------SEGPNPLQVEQLLVVTFTE 59 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW-----LLLAERQM 121 AA AELR RI + + +A L+ + + L E I ++Q LLLA ++ Sbjct: 60 AAAAELRDRIARRLQQA-LALLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERL 118 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 D A + TIHGFC+R L A E+G+ L R Q D+W++H L ++ Sbjct: 119 DRADITTIHGFCRRTLQRQALEAGLGPAVSLESQGHDRREQLVHDYWQQHVLLLSPQLLA 178 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ----WR 237 + + P L+ + A + A P ++ AQ+ + Q+ W Sbjct: 179 GLQQRGIHPDGLISVLANLDGDPALQLDALPDAQDSDLPLAAQLEDAWTSRWQRFLTLWE 238 Query: 238 DAVGELDALIESSGIDRRK-------FNRSNQAKWIDKISAW---------------AEE 275 + L+ + ++ + + + + + K+ +W A+ Sbjct: 239 SSADALEHDLAAAAAELKSLALPYSPYRLKPKPDRLQKVQSWIDSLEGRTPGYDAVLAQA 298 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEI 335 E Y P K + DR P+ L AI L+ P L Sbjct: 299 ELQKYFHPGPFTKVAAAAHGDRV----SLPQAELLRAIADLVDGPAEAMLLHFGH---WG 351 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTDPQQY 394 R+ + R + R G++ F +L +LD + L AI R+ A+IDEFQDTDP Q+ Sbjct: 352 RQELTRRRERSGQMSFGQLLEQLDPGAGDDGATSPLLQAIGQRYRAALIDEFQDTDPIQW 411 Query: 395 RIFRRIWHHQPETALL-LIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGM 453 RI R + P LL ++GDPKQAIY FRG ++ TY A S+ Y L N RS+ + Sbjct: 412 RILERAFTGDPPQHLLVMVGDPKQAIYRFRGGELATYRLAASKTEQCYGLYENRRSSEPL 471 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 V ++N L P P+ G+ P + L Sbjct: 472 VRALNALMQPGLQRSELPVPPVEPMADKGE-----LAMPDGQSPLQLLNLDP-------- 518 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 +Q+ + Q + + L + +R + D+ +LV +A +R AL Sbjct: 519 ------HHLDSQVATFCQQLLQEQWPLRSERGSRVLEPGDLCLLVSQHSQAEALRSALER 572 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 +PS +S D VFE+L A + L A+ P R + ++G +A DI+ N Sbjct: 573 HHLPSRLVSKGD-VFESLGAAALQRFLDALALPGHNGRQRLLAGSPLLGWSAADIQ--NA 629 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 WD + + +G+ +L L + +A L+ G R L D+ +EL Sbjct: 630 QPQDWDQLAAALSNLAERLPHQGLTAVLAQLQGSEGLAR--LSLRG--RTLADLQQAAEL 685 Query: 694 LQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQM-RLESDKHLVQIVTIHKSKGLEYPL 751 +QE +L WL + L+ + + R ++ + + +VT+H+SKGLEYP+ Sbjct: 686 VQEQMHKLGLGTLQAADWLRRQRLQDHGESPEAHLCRSDAAESAIAVVTVHRSKGLEYPV 745 Query: 752 VWLPFITNFR-------VQEQAFYHDRHSFEAVLDLNAAPE--------SVDLAEAERLA 796 V PF+ Q + + LDL+ P D A Sbjct: 746 VICPFLWKGSKAIKAGARQLGRRWMRSPEADPHLDLHLNPHWGQGRLAAQQDQRAQAAEA 805 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 E RL YVA TR+ LG + D + L L +G + L C Sbjct: 806 E--RLAYVACTRARHLLVLGWPGV---------DLAEPANPLSPWLVEGGLERDLPLHRC 854 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 +T + +PWQ + T R W SYS + Sbjct: 855 -----------ETRASNTIKPWQPEPPQGSLALGPTPSRPLDSRWGRASYSAWAHSQVAV 903 Query: 917 AQDLMPR-LDVDAAGVASVVEEPTLTP--------------------HQFPRGASPGTFL 955 ++ D DA + +E P +FPRGA PG L Sbjct: 904 PPEMREDGRDTDAINLEPALEHTASIPNDGITPLSEKQTSWPELGPLAEFPRGAGPGDAL 963 Query: 956 HSLFEDLDF------TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--TGV 1007 H + E +D+ V E+L G +W L ++ ++ P+ Sbjct: 964 HRILERIDYGTLAAGDDAQARVVVAEELPRAGLSLEWADTLMSGLSQLMHTPMGGALGAC 1023 Query: 1008 SLSQLSARNKQVEMEFYLPISEP-----LIASQLDTLIRQFDP---LSAGCPPLEFMQV- 1058 L L + EM F LP++ + +S L + L + V Sbjct: 1024 RLGDLRKGDWLNEMNFDLPLAHTQPDHLVRSSGLAKVFNAHPGGLFNEGYGQQLNLLDVA 1083 Query: 1059 -RGMLKGFIDLVFRHEGRYYLLDYKSNWLGED----------SSAYTQQAMAAAMQAHRY 1107 RG L G IDLVF EG +++ D+KSNWLG+ + YTQ+AMA M ++ Y Sbjct: 1084 SRGFLTGSIDLVFCWEGTWWVADWKSNWLGQRDGQGTVQQCGPANYTQEAMAELMVSNHY 1143 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ---------QGIYTT 1158 LQ LY +ALHRYL R+ Y E H GG Y+FLRGV Q G+ Sbjct: 1144 PLQAHLYLVALHRYLHWRLPGYTPELHLGGYAYVFLRGVPGALAQDRPKHKTATPGVLVD 1203 Query: 1159 RPNAGLIALMDEMF 1172 +P+ + +D + Sbjct: 1204 QPSLERVLALDALL 1217 >UniRef50_B5JHV0 UvrD/REP helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHV0_9BACT Length = 1170 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 346/1208 (28%), Positives = 549/1208 (45%), Gaps = 90/1208 (7%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G LIEASAGTGKT+ + + L+L L G +T++ +L VTFTEAAT EL R Sbjct: 6 KGTTLIEASAGTGKTYRLCRIALQLTLQHG--------ITLDRILAVTFTEAATEELASR 57 Query: 76 IRSNIHE-LRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 I+ LR + ++ L E L E D +A L + DEA + TIH FC+ Sbjct: 58 IQKLYQGCLRELETGDPKEDVLLECLKSEDFDVERAKNALRYSLEVFDEAPISTIHSFCK 117 Query: 135 RMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 R L L A E+ + +L + E L Q ++ R+H ++ + +E K + L Sbjct: 118 RCLELVALETQNPLDAELSQIEDDLIVQLQGEYIRQHILEASSALS-LAYEAQKDFEKRL 176 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDR 254 ++I+R P P + ID++++++R+ L L++ S Sbjct: 177 KEISRQTSSHPDASLRPIPTPIS-----------IDSLERRFRELPEALSNLVDRSEEYL 225 Query: 255 RKFNRSNQA--KWIDKISAWAEEETNSYQLPESLEKF----SQRFLEDRTKAGGETPRHP 308 + ++ + + K + LP L S+ + + K+G + P P Sbjct: 226 KHLGKARKPAKQLSGKSPGLLACVKRGFLLPADLGWLGDFSSEAWSKAMNKSGQDLPLPP 285 Query: 309 LFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE 368 + ID +L + S +I + + R K++ + F+D+L L AL E G Sbjct: 286 VTALIDVVLDQIESAYLSLIYNYRPWLSGRLERAKQQANVISFNDLLHHLQRALTGEEGT 345 Query: 369 VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIF 428 + + R+ A+IDEFQDTD Q +I R ++ H E L IGDPKQAIY FRGADI+ Sbjct: 346 RIIEFLAGRYDAALIDEFQDTDRTQLKIARSLFGH-GEHYLFYIGDPKQAIYRFRGADIY 404 Query: 429 TYMKA-RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 Y +A + E + LD N+RSAP +V +VN LF + F+ I F V+S L Sbjct: 405 AYFQATQGEGLRNEILDKNYRSAPKLVEAVNALFESSRAGFVDERISFRSVESG-----L 459 Query: 488 RFVFKGETQPAMKMWLMEGESCG----VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 QP ++ + E+ +Y++ +A+ A L Sbjct: 460 DAADFSSEQPPFRIVQLRLENPSYPKSKSEYRNILAERAANDFAKRLNESPE-------- 511 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 ++A D+S LV R EAA + +AL I + ++R SVF+T EA ++ LL A+ Sbjct: 512 -----LKAEDVSFLVNDRIEAAALSEALLQRGISAAIHADR-SVFKTQEAIDLKQLLAAL 565 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRA 663 ++P R + R A A L+A+ + + + E+ V E + + W R L Sbjct: 566 VSPARTSLKRGACAALDHSLSAVSMRS-ESFENRVAPVFEYITEWARDWHTRNFDVALHG 624 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNA 722 L+ N E+ ERR +I + ELL EA E S L WL + S+ Sbjct: 625 LLRLLNSEESPSGGLDTERRHANICQLGELLSEARDAEELSPRGLYNWLCRKTEANVSHN 684 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT--NFRVQEQAFYHDRHSFEAVLDL 780 Q R+ SD+ QI+T+HKSKGL++P V LPF+ R++E A + E ++D Sbjct: 685 EEWQTRISSDERKPQILTVHKSKGLQFPYVILPFLGLRRVRLKELASAYHGPEDELIIDY 744 Query: 781 NAAPESV--DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 +P+S A E LAED+RLLYVALTR+ + + P R + Q L Sbjct: 745 APSPDSPASQHARREALAEDIRLLYVALTRAEHENLVYLCPEELSRTGDLACSSFAQFLL 804 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG-------DNQPWQVNDVSTAELNAK 891 ++ A + + +A++ + + + +E N + Sbjct: 805 DE-GERTSSDAVAAQLHSLAEGSNGSLAFEQSPLDSSGFVQCEATDSHAETAAASENNLQ 863 Query: 892 TLQRLPGDNWRVTSYSGLQQRGH-GIAQDLMPRLDVDAAGVASVVEEPT----------- 939 R+P RV S+S L + H ++ + L+ + + + EP Sbjct: 864 NRARMPFVE-RVLSFSALNKGMHRDEDENSIELLEQEESASDELNIEPEAELEQTEAQPL 922 Query: 940 -LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV-REKLELGGFES-QWEPVLTEWITA 996 L+ P+G G LH + E DF++P + ++ + FE +EP++ I++ Sbjct: 923 ELSIFTLPKGTHAGDLLHLILERFDFSRPETLSATTQQAFDALQFEPRDFEPIVAAQISS 982 Query: 997 VLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL-----SAG 1049 + +A L T +L Q+S + E+EF P+S + ++ L L R G Sbjct: 983 IAKANLKSQFTEFTLEQISPDRRIPELEFSYPVSGDVKSNILSALSRSDLGFIPTDWLEG 1042 Query: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 E ML+GFIDLV H+ R Y+ D+KSN+LG + Y Q A+ +M H Y L Sbjct: 1043 LSHSEAGLPASMLRGFIDLVLEHDNRLYIFDWKSNYLGPTPADYDQAAILESMGEHNYFL 1102 Query: 1110 QYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 QY LY +AL RY R +E FGGV Y+++RG+ + GI+ P+ L+ +D Sbjct: 1103 QYLLYCVALKRYAEWRFPGKPFEESFGGVFYIYVRGISP-GKETGIFYDLPSPELLQALD 1161 Query: 1170 EMFAGMTL 1177 E G L Sbjct: 1162 EALYGGVL 1169 >UniRef50_Q0IBA6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Synechococcus RepID=Q0IBA6_SYNS3 Length = 1212 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 329/1271 (25%), Positives = 515/1271 (40%), Gaps = 157/1271 (12%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 ++ P PL G RL+EASAGTGKTF +A L LRL+ R L ++ELLVV Sbjct: 1 MSSRFQPNHYPLDAGIRLLEASAGTGKTFALAHLVLRLVT--------ERKLNLKELLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNP------------LYERLL---EEIDDK 107 TFTE+A AELR RI +++ A L+ T+N + E L+ ++ + + Sbjct: 53 TFTESAAAELRDRIGRRLNDALQALLQNQTNNSNSQTDSSPTDAVMEEWLILHGQDPNTR 112 Query: 108 AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF 167 A LL A ++ A + TIHGFC+R L A ++G E L D L + D+ Sbjct: 113 RTIASNLLEALEGLERADITTIHGFCRRSLRRQALQNGTAMEVCLENDSQHLSQEVAYDY 172 Query: 168 WRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRH----- 222 W LP + L ++R L + V A + L Sbjct: 173 WEHQVLALPASDVSGLLHAGLSADQLSHALSR-LDSDCAVRIAGTEGSDHLEGPLIECFD 231 Query: 223 AQIVARIDTVKQQWRDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWAE 274 + + + +W L+ D R ++ + +++SAW Sbjct: 232 QWLQSSWTAFEAEWNTNGRTLETAFRDCATDWRSQGQTDTKPYSPKPKKDRANELSAWIS 291 Query: 275 EETNSYQLPESLEKF-SQRFLEDRTKAGG-------------ETPRHPLFEAIDQLLAEP 320 ++ ++ S +Q L D G P+ L +AI L P Sbjct: 292 QQNSTQPFRISYGDVRNQSLLGDYFHPGCFSKTARRCNEIHPNLPQPTLQKAIAALWDGP 351 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPV 380 + V AL +T+A + ++G + F +L LD + I+ R+ V Sbjct: 352 A---EKVWRHALTHGLQTLAARRAQQGVISFSGLLDALDPQATDAEPKRWLVPIQRRYRV 408 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 A+IDEFQDTDP Q+R+ + + P LL++GDPKQAIY FRG D+ TY +AR + Sbjct: 409 ALIDEFQDTDPLQWRLLQACFA-TPNHLLLMVGDPKQAIYRFRGGDLNTYKQARQQADQI 467 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 L N R+ P ++ ++N+ + P +A L QP Sbjct: 468 DNLLDNRRTTPSLMEAMNQWMAPGLKRSKLEVPRVTPCATA-----LPLELPDGEQPLQL 522 Query: 501 MWLMEGESCGV---GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + L +S +ST+ + A Q L D + SD+ VL Sbjct: 523 IDLQADDSDSPPTRTALESTIPPLVACQALHLL-------------DSDPSLTPSDLCVL 569 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 V ++A VR+ L +PS +S D V T A E+ LL A+ TP LR Sbjct: 570 VSRHRQAEAVREQLAQRGLPSRLVSPGD-VLSTTGAAELQHLLDALTTPADGGRLRRLAC 628 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 +++M + ++ + D + + + G++ L L+ R +A+ L++ Sbjct: 629 SALMQWTSHQLQDAETNGD-LDRLAGQLRNLQDDLPFLGLLGCLSQLLEGRMLAD--LSS 685 Query: 678 AGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEP-DSNASSQQMRLESDKHL 735 G R L DI + L+Q+A Q + WL + L+P + ++Q + + Sbjct: 686 RG--RLLGDIQQCARLVQDAMHRQGLDLGSAADWLRRQRLQPIEPTPDNRQPHSDLAESA 743 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY--HDRHSFEAVLDLNAAP------ESV 787 V +VT+H+SKGL+YP+V P++ + + + E + P ++ Sbjct: 744 VAVVTVHRSKGLQYPVVICPYLWQAPADGKGPLWRNPPNDPEGTWQVALNPHWGHGHKAA 803 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 + + + AE RL YVALTR+ H + + + L +++ Sbjct: 804 ERNQDDSAAEAERLAYVALTRAERHLVVFWVAAAGQDAN----------PLANWVKELSM 853 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 +D + W+ A + QR +W +SYS Sbjct: 854 RDKPLASRHLPPETTTLPFWRPAPRIETLQLS-----------DVPQRTLDRSWGRSSYS 902 Query: 908 GL--QQRGHGIAQDLMPR-----LDVDAAGVASVVEEPTLT------PHQFPRGASPGTF 954 Q GH PR D+DA E P T FP+G G Sbjct: 903 AWISTQNGHHKPAPADPRNLEEGRDIDAVADTEAPESPANTADQNGPLADFPKGPGAGDC 962 Query: 955 LHSLFEDLDFTQPVDPN----WVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVS 1008 LH + E + F P D V E++ G + ++ + + VL+APL + Sbjct: 963 LHRILEQVSFQGPADQAPNQAVVAEEIGRAGIDLEYCDAVITALNTVLKAPLGGPLKDLK 1022 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV--------RG 1060 LS LSA + E+ F LP+++ L F+ S + Q RG Sbjct: 1023 LSDLSAGRRLHELSFDLPVAQRGKPVNSAGLAHAFEADSDHRFGQHYAQSLRQLDIRSRG 1082 Query: 1061 MLKGFIDLVFRHEG-----RYYLLDYKSNWLGED----------SSAYTQQAMAAAMQAH 1105 L G IDLVF R+++ D+KSNW+GE Y+Q AM M +H Sbjct: 1083 FLTGSIDLVFTDGENPATARWWVADWKSNWIGERDDSGRGVACGPRHYSQAAMEEQMLSH 1142 Query: 1106 RYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 Y LQ LY LAL RYLR R+ YD E H GG Y+FLRG++ E G+ I Sbjct: 1143 HYPLQAHLYLLALDRYLRWRLDGYDPERHLGGYAYVFLRGINPEG-GSGVVIEPAPLKRI 1201 Query: 1166 ALMDEMFAGMT 1176 +D+ G++ Sbjct: 1202 RRLDQWLEGLS 1212 >UniRef50_A2C8A3 Possible UvrD/REP helicase subunit B n=2 Tax=Prochlorococcus marinus RepID=A2C8A3_PROM3 Length = 1274 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 322/1283 (25%), Positives = 519/1283 (40%), Gaps = 143/1283 (11%) Query: 8 LDPLRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 PL G RL+EASAGTGKTF L L + ELLVVTFTE Sbjct: 12 FQSNDYPLGPGLRLLEASAGTGKTF--------ALAHLALRLLTEGGHQISELLVVTFTE 63 Query: 67 AATAELRGRIRSNIHELRIACLR-------ETTDNPLYERLLEEIDDKAQAAQW---LLL 116 AA AELR RI + + D L + L D +Q QW LL+ Sbjct: 64 AAAAELRSRIGQRLEHALEGLEALDHGATDKPPDLVLEQWLQCNGHDVSQRHQWISSLLV 123 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A +D A + TIHGFC+R L A ESG + + +L + L + D+W++ L Sbjct: 124 ALESLDLADITTIHGFCRRTLRRQALESGAVMDPRLDDSGQQLVQEVVHDYWQQQVLALD 183 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ- 235 + + + + L + + + + ++ + ++ +Q A + QQ Sbjct: 184 AQHVRGLLHAGLSVENLAKGLLKLDSDPSLALETHTSNLQSSQPLSSQFDAYLQQCWQQF 243 Query: 236 ---WRDAVGELDALIESSGIDRRKFNRSNQAKWIDK--------ISAWAEEETNSYQLPE 284 W+ ELD + S D R + + K ++ W E + S Q + Sbjct: 244 VDHWQRHGSELDIALSSRAADWRSLGSKDTKPFSPKPKKDRFAILNHWLEAFSQSPQHSD 303 Query: 285 S---------------LEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP-LSIRDLVI 328 + F + + GE +PL A+ + +A+ + V Sbjct: 304 QPFTPGYAAIRDQSLLTDYFHPAVVCTVARRCGEENPNPLMPALQRSIADLCDGPAEQVW 363 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE--------SGEVLAAAIRTRFPV 380 AL +A +R+RG + + ++LS LD +SE A+R R+ V Sbjct: 364 NHALHWGLSALAERRRQRGVMSYAELLSALDPKPQSETIAQPHPDQQAPWLEALRQRYRV 423 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 A+IDEFQDTDP Q+R+ + H P+ LL++GDPKQAIY FRG D+ TYM ARS+V Sbjct: 424 ALIDEFQDTDPVQWRLLEGAFAHSPDHLLLMVGDPKQAIYRFRGGDLNTYMHARSKVDRI 483 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 L N+R+ +++ +N L + ++P + S ++L ++ Sbjct: 484 DALLDNFRTTTPLLDGLNDLMAPGLRRSKL-DVPSLTACSQATPRSLPLGVN-----PLQ 537 Query: 501 MWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 + ++ + G S + + + + L + D+ SDI +LV Sbjct: 538 LLNLDEATHPTGSIPSPLTSKT--NLEEQIPTAVAHAVLDLLQSDSYNFSPSDICILVGR 595 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 ++AA +R L + +P+ +S D V + AQ + L + P ++L+ +++ Sbjct: 596 HRQAASIRQGLAVAGVPTRLVSQGD-VLTSEAAQVLQRFLDCLARPSHSSSLKLVACSAL 654 Query: 621 MGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG 680 M N + + D + F + + G+M L L+ R IA+ L+ G Sbjct: 655 MQWNTEQLAHAECNGE-LDQLALRFRNWAINLPRLGLMGCLAELLEGRTIAD--LSERG- 710 Query: 681 ERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEP-DSNASSQQMRLESDKHLVQI 738 R L D+ ++L+QE Q WL + L+P D +Q + + V + Sbjct: 711 -RLLGDLYQCAQLVQEVIHRQGLDASTAADWLRRQRLQPVDPVPEVRQPHSDVAESAVAV 769 Query: 739 VTIHKSKGLEYPLVWLPFITNFR-VQEQAFYHDRHSFEAVLDL----NAAPESVDLAEAE 793 VT+H+SKG+EYP+V P++ + + + L + + Sbjct: 770 VTVHRSKGMEYPVVICPYLWQAPSLPHGPLWRSGSESHWCVALSTGWGKGWQLSQQSHQA 829 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 L E RL YVA+TR+ L A ++ G+ A+ +Q P+ + Sbjct: 830 SLQEAERLAYVAITRACSLLMLIWARGAKQEGNPLSAWLFGVDAIDAAMQDLTPE---RM 886 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 ++ Q WQ + +T QR +W +SYS Sbjct: 887 SAWLDRQQLPITVVPAQLKSMQQRWQPPPLQGELALGQTPQRRLDLSWGRSSYSAWVSAA 946 Query: 914 HGIA-------QDLMPRLDVDAAGVASVVE-------------EPTLTPHQ------FPR 947 H +L D D + +++ PTL FPR Sbjct: 947 HTYDGSAPADPLELEEGRDSDQQKLEPMLKLQDQSAIADASRSTPTLNWSDQSPLGQFPR 1006 Query: 948 GASPGTFLHSLFEDLDFTQPVDPN----WVREKLELGGFESQWEPVLTEWITAVLQAPLN 1003 GA G LH + E LDF +P+ + E+L G + + + + VL P+ Sbjct: 1007 GAVAGDCLHRILERLDFCKPLQDPNAVIVIEEELRRAGLDITLLASVQDGLDRVLSTPIG 1066 Query: 1004 ET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV--- 1058 + G+ L+QL + + E+ F LPI+ + L F L + ++ Sbjct: 1067 GSLGGLRLNQLHGQRRIHELSFDLPIAHQGKVLRSFDLASVFHLNPLARFGLPYAEMIKG 1126 Query: 1059 -----RGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGEDSS----------AYTQQAM 1098 RG L G IDLVF E R+++ D+KSNW+G S Y AM Sbjct: 1127 LNVCSRGFLTGSIDLVFTDAEDSLEARWWVADWKSNWIGRRDSEGQAVACGPLHYDDSAM 1186 Query: 1099 AAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTT 1158 M H Y LQ LY +ALHR+LR R+ Y+ + H GG +Y+FLRG+ G T Sbjct: 1187 EQQMLLHHYPLQAHLYLVALHRFLRWRLPSYEPKLHLGGYVYVFLRGLPGAKAMNGRSLT 1246 Query: 1159 RPNAGLIAL---------MDEMF 1172 +P GLI +D + Sbjct: 1247 KPVPGLIVEPAPLERVLLLDRLL 1269 >UniRef50_A3YYL1 UvrD/REP helicase-like protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YYL1_9SYNE Length = 1285 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 340/1292 (26%), Positives = 521/1292 (40%), Gaps = 149/1292 (11%) Query: 10 PLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 LPL G LIEASAGTGKTFT+A L LRL+ R L++ LLVVTFT+AA Sbjct: 9 ANGLPLDPGVHLIEASAGTGKTFTLAHLVLRLV--------GERQLSLRALLVVTFTKAA 60 Query: 69 TAELRGRIRSNIHELRIA------CLRETTDNPLYERLLE-EIDDKAQAAQWLLLAERQM 121 AELR RI + + + E D L E L + + LLLA ++ Sbjct: 61 AAELRDRIGRRLQQAQQLLQTPDPAGHEGLDQELKEWLGNIPPQNYERLRAQLLLALEEL 120 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 D A + TIHGFC R L A E+G+ E +L D +LL+ Q D+W++ PLP + Sbjct: 121 DAADITTIHGFCHRSLQRQALEAGLAPEVELDNDGALLQEQVVHDYWQQQVLPLPAHALR 180 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAP-----PPDDETLASRHAQIVARIDTVKQQW 236 + QAL + + L+G+ + P+ AQ A + W Sbjct: 181 GLISKGVQIQAL-QSLLATLEGDPTLASPELPPRWDPERPLPDQWLAQWKADWQRFQALW 239 Query: 237 RDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 L+ + ++ +R++ ++ + K +SAW + + E LE+ Sbjct: 240 EQQGEALEQALCAAAAERKQAGLKSKGPYSAKPRHKRAQLLSAWLQHQPCPGSYTELLEE 299 Query: 289 FSQRFLEDRTKAG----------GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRET 338 ++ D G G P+ P ++ A + V+ R Sbjct: 300 -KTSWIPDYFHPGPISQAAAALEGPRPKLPQPRLLEAAAALVDGPAEAVLGHFCHWARAE 358 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 +AR ++R G + + D+L LD L A+ R+ A+IDEFQDTDP Q+RI Sbjct: 359 LARRRQRGGRMSYGDLLVGLDPGGDGSQRPGLIEALSQRYGAALIDEFQDTDPLQWRILH 418 Query: 399 RIWHH---QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 R + QP L+L+GDPKQAIY FRG D+ TY A S + L N+RS+P ++ Sbjct: 419 RAFAAAAAQPRHLLVLVGDPKQAIYRFRGGDLDTYRTASSTAATSHRLARNFRSSPPLLE 478 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY- 514 ++N+L + ++P P+++A + P +WL + Sbjct: 479 ALNRLMAP---GLPRSQLPVPPLQAARPEGGEPLILPAGQHPLQLLWLGSDRAAAEALPS 535 Query: 515 QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 + + ++ + + G+ +RP++ SD+ +LV Q+A +R+AL Sbjct: 536 RGELENRVGDRVAALVLDLLLRGWRMGEGEGSRPLQPSDLCLLVDRHQQAEDLREALERR 595 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 +PS LS D VF A + LL A+ P LR A+ ++G + + + Sbjct: 596 GLPSRLLSQGD-VFAGEGAALLQRLLDALAEPGSGPRLRLLAASPLLGWSPQQLAAAGSQ 654 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 E WD + + + G++ L L+ + +A L+ G R L D+ +EL+ Sbjct: 655 E--WDRLSGQLARLAERLPDDGLLATLGRLLRSEELAR--LSLQG--RWLADLQQCAELV 708 Query: 695 QEAGTQLE-SEHALVRWLSQHILEP-DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 QE Q A WL + L P ++ +QQ ++ V +VT+H+SKGLE+P+V Sbjct: 709 QERLHQQRLGAAASADWLRRRRLHPPETAPENQQPHSDAVASAVGVVTVHRSKGLEFPVV 768 Query: 753 WLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAE--------------RLAED 798 P+ + P+ + AE Sbjct: 769 ICPYFWQGVGSTNRRGGRGIGRRWTPPQASGPQLDVHLDQRWGPGQEAAEQEQAALTAER 828 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 RL YVALTR+ LG P + + L L + + +E Sbjct: 829 ERLAYVALTRARELLVLGFGPARGQGSNPLIPWLFSDQPLPALEADDDIDAGRSDQEWLE 888 Query: 859 ALCDD----DIAWQTAQTGDNQP----WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ 910 L + + QP WQV + + W +SYS Sbjct: 889 HLEGEIERRALPITLISGDPEQPAARRWQVPAEAGDLRTGPVPRWSLLSGWGRSSYSSWT 948 Query: 911 QRGHGI-----------AQDLMPRLDVDAAGVASVVEEPTLTPHQ-------------FP 946 Q HG D R DA G +P FP Sbjct: 949 QGAHGEPLAPEAIEEGRETDGFDRTASDADGPGPQATDPVSPKQGPETWGGRNGPLAMFP 1008 Query: 947 RGASPGTFLHSLFEDLDFTQPVDP----NWVREKLELGGFESQWEPVLTEWITAVLQAPL 1002 RGA+ G LH + E +D QP D V +LE G + + P +++ + P+ Sbjct: 1009 RGAAAGDCLHRILERVDHRQPGDDPLHRELVERELERAGLDLEHAPATLQFLEQLRHTPM 1068 Query: 1003 NE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL------------SA 1048 V L+QL R + EM F LP++ AS L+R Sbjct: 1069 GGALGEVCLAQLDPRRQLREMPFDLPLALGADASAGRALVRAQGLAEVFSRHPEGSVSGT 1128 Query: 1049 GCPPLEFMQV--RGMLKGFIDLVFRHEG-----RYYLLDYKSNWLGEDSS---------- 1091 L + V RG L G IDLVF G R+++ D+KSNWLG+ Sbjct: 1129 YPQRLAELNVASRGFLTGSIDLVFTAPGGDGQERWWVADWKSNWLGQRDPQGQPVACGPL 1188 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 Y + MAA M++H Y LQ LY +ALHRYL R+ Y+ + GG +Y+FLRGV Sbjct: 1189 DYGRDEMAAVMESHHYPLQAHLYLVALHRYLGWRLPGYNPQRDLGGSVYIFLRGVPGAIS 1248 Query: 1152 Q-----------QGIYTTRPNAGLIALMDEMF 1172 G++ G + +D + Sbjct: 1249 PPPDLTMAELSVPGMFVEPAPLGRLEALDALL 1280 >UniRef50_C0DS65 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DS65_EIKCO Length = 1241 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 355/1264 (28%), Positives = 548/1264 (43%), Gaps = 132/1264 (10%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70 L LP QG L+EASAGTGKT++IAAL+ RL++ G + E +LVVTFTEAATA Sbjct: 9 LPLPPQGTHLVEASAGTGKTYSIAALFTRLVVLEGWA--------PENILVVTFTEAATA 60 Query: 71 ELRGRIRSNIHELRIACL-RETTDNPLYERLLEEIDDKAQAAQW---LLLAERQMDEAAV 126 EL+ R+R+ + E+ A ET + + LL E K + ++ L A D AA+ Sbjct: 61 ELKNRLRARLGEVLAALQSGETPADEFLQHLLAEALAKQERSKLILQLQAALSGFDTAAI 120 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIHGFC R+L AF G+ FE + ++ R A DFWR H P+ A++ Sbjct: 121 YTIHGFCLRVLGDYAFLCGVPFELETGPVDTAARLVAAQDFWREHVADHPQN-ARIAARF 179 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 P ++L + + L+ + P +R QI + Q+ + V E++A+ Sbjct: 180 GITPASVLAEFSGSLKRAFLDYRLP-------ENRLTQIQKGLHAAWQKLQRNVEEIEAV 232 Query: 247 IE--SSGIDRRKFNRSNQAKWIDKISAWAEE-ETNSYQLPESLEKFSQRFLEDRTKAGGE 303 + FN S + + A E E P+ L F + L +R + Sbjct: 233 YRRIKPQLHGGTFNASIDTLFTELRQAAQEGLEQPVLSKPDRLLCFEENALRNRIRKNQH 292 Query: 304 TPRHPL-----FEAIDQLLAEPLSIRDLVITRALAE----IRETVAREKRRRGELGFDDM 354 + + LAE R E ++ +A +KRR +DD+ Sbjct: 293 IEEADIAALQPLAVFGRRLAEIDDAEQEAAIRLKLECLGYLKTRLAEDKRRSSRRDYDDL 352 Query: 355 LSRLDSALRSESGEVLAAAIRT----RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 L + +AL + A A+ ++ VA+IDEFQDTDP QY IF + Q + Sbjct: 353 LLDVHAALSNPEHPEQAEALAQALAAKWRVALIDEFQDTDPLQYAIFHTAFIRQ-GVPVF 411 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHAH--YTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L+GDPKQAIY FRGADI Y+ A ++ YTL TN+RS +VN + LF+ F Sbjct: 412 LVGDPKQAIYGFRGADIHAYLAAAADTAPEQSYTLHTNYRSHRDLVNGIGHLFAARSRPF 471 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPA-MKMWLMEGESCGVGDYQSTMAQVCAAQIR 527 + +I + V++A L + + +G+ + A CA +I Sbjct: 472 VLPQIAYPAVQAARAESLLSPAPEAAVAVRWINPSAEDGKLPNKDFLRELSANYCAREIA 531 Query: 528 DWLQAGQRGEALL--MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 L G ++ + +P+ I+VLVR +E V AL + SV L + Sbjct: 532 ARLNQAFSGSLMIEGKDSKKNKPLHPGQIAVLVRKHEEGEMVARALKRRGVRSVLL-QQQ 590 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 SVF+T EA+ + LL + P++ LR L G A D+ LN +E+ + Sbjct: 591 SVFDTPEAEALHALLLFWLAPQQTEYLRFVLGGIFYGYTAQDLAELNGNENRLAEWITLA 650 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH 705 + + W++ G+ L + ++LL T ER T+ ++E+L A + S Sbjct: 651 ETAAEAWQQHGIYTALTRFARQSGLEQHLLHTRN-ERSFTNFRQLAEILALAAAECASPV 709 Query: 706 ALVRWLSQHIL--------------EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 AL +WL + D Q+RLESD+ LV+IVT+H +KGLEYPL Sbjct: 710 ALAQWLEMRLKSSKKNKKSKENKNDREDKGNKEYQLRLESDEDLVKIVTMHAAKGLEYPL 769 Query: 752 VWLPFITNFRVQ--EQAFYHDRHSFEAVLDLNAAPESVDLAE--AERLAEDLRLLYVALT 807 V+ PF+ + + + + + +L A + D + AE L E LRLLYVALT Sbjct: 770 VFCPFVWDTSDKLVQDWNIISQSNGRNLLLAKAQLDEEDERQLFAEDLGERLRLLYVALT 829 Query: 808 RSVWHCSLGVAPLVRRRGD-------KKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEAL 860 R+ L AP + + G+ D KG+ A + ++ + Sbjct: 830 RAREQLVLYAAPCSNTPENTFAYLLAEIGEDDCQAIRDDWRGLKGQALTEALRQAWLKRI 889 Query: 861 ---CDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 + W + + ++ + A L P R TS++GL ++ Sbjct: 890 QSAAPGQLQWLEGEPPEAN-YRARNEQQGSYRALVLPERPLQFIRHTSFTGLSRQTLTAE 948 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQ--------------------------------- 944 + L L D A P + Sbjct: 949 EWLPENLLADENPAAETERLPENERSEFLRSKNVSDELRANGQNVVQPNGQGNLWLNEAE 1008 Query: 945 -----FPRGASPGTFLHSLFEDLDFTQPVDPNWVREK--LELGGFESQ-WEPVLTEWITA 996 FP G PG LHS+ E DF L+ GFE++ W P + E + A Sbjct: 1009 TALLAFPAGTQPGICLHSILEQTDFVHLAAEQAASYADILDKHGFEAEAWLPAVLEMVEA 1068 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL----SAGCPP 1052 V + PL E + L+ + A ++ EM F L + + + R L +A P Sbjct: 1069 VRRVPLAE-NMQLADIPADSRVAEMGFVLHLHDFGLKRLRRWFARSDIGLPENAAAHLPQ 1127 Query: 1053 LEFMQVRGMLKGFIDLVFR-HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQY 1111 L+F V G L GFIDL+ GR ++DYKSN LG + Y + AM+AA+ H Y LQ Sbjct: 1128 LDFHAVTGFLNGFIDLIAAGKNGRVCVIDYKSNHLGSRLADYGRAAMSAAVSEHHYYLQA 1187 Query: 1112 QLYTLALHRYLRHR--IADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 +Y +A RYL+ R + +Y + V YLF+RG++ H Q+G++ ++ + Sbjct: 1188 LIYAVATARYLKQRRALPEYIH------VRYLFVRGLNP-HGQEGLWCWDIP---VSALQ 1237 Query: 1170 EMFA 1173 E Sbjct: 1238 EWLE 1241 >UniRef50_Q15V10 DNA helicase/exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V10_PSEA6 Length = 1320 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 347/985 (35%), Positives = 509/985 (51%), Gaps = 72/985 (7%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ PL G LIEASAGTGKT+TI LYLRLLLG + PL+V+++LVVTFT Sbjct: 3 PLNTKTFPLTGASLIEASAGTGKTYTIVNLYLRLLLGDECT-----PLSVDKILVVTFTN 57 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AATAEL+ RIR + + + + + L+E D+ LLLA +QMD+AAV Sbjct: 58 AATAELKQRIRQRLQRAYLDFYAGVSSDDFTQYLIERSDNIELDCHRLLLAIKQMDDAAV 117 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIHGFCQRML+L+AFESG ++EQ L+ DES A D+WR H LP ++ + + Sbjct: 118 YTIHGFCQRMLSLHAFESGAMYEQSLVLDESQWLKLAVEDYWRGHIVHLPSQVLNELLDI 177 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 W PQAL + L ++ D +T + + + K+ WR+ E+ Sbjct: 178 WHCPQALQSALRSLLYRHVTPLQT--VDVKTSHESVDKYIKALQDTKRWWREN--EVAQQ 233 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE-KFSQRFLEDRTKAGGETP 305 I + + + +A +I K+ A+ + + + L FS + K ++ Sbjct: 234 IIDADLKANT--KLGKADFIAKMQAFCLSDDSRADFDKDLWTTFSPAKVLSAMKKTSKSL 291 Query: 306 RHPLFEAIDQLLAEPLSIRDLVI----TRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 H F + L D ++ AL I +A K+R L DD+LS L A Sbjct: 292 AHLDFSRFETLAHLQKQCHDQLLLAHSLDALKHISTNLASNKQRLQLLSPDDLLSSLHRA 351 Query: 362 LRSE-----------------------SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 L ++ + + LA AI+ +P A+IDEFQDTDP Q+ IFR Sbjct: 352 LLAQVESNSGQVIEPDSELSHRDKLDTAHQSLAQAIQLSYPAALIDEFQDTDPVQFDIFR 411 Query: 399 RIWHHQPET---ALLLIGDPKQAIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGM 453 I+ Q + IGDPKQAIYAFRGADI TY+ A+ + +TL TNWRS P + Sbjct: 412 IIYTQQFGDVTPCWVAIGDPKQAIYAFRGADIHTYIAAKKLVDASRQFTLGTNWRSQPSL 471 Query: 454 VNSVNKLFSQTDDAFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWL-MEGESCGV 511 V VN LF+Q++ F+F++ IPF V S + L+ V + A +G G Sbjct: 472 VEGVNTLFTQSEAGFLFKDSIPFQAVASVEQQSGLQVVGQAHNSLAFHHLTSNDGLPIGW 531 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 G+ QS +AQ CA I ++ G GEA + RPVR D VLVR R EA ++ AL Sbjct: 532 GEAQSALAQQCALSIAQFIHQGASGEAQIKQ----RPVRPGDCCVLVRDRNEADTIKQAL 587 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 L + S++L+ R SVF + A ++ ++QA+ P + LR A+A+ + +A ++ L Sbjct: 588 AALGVDSMFLA-RKSVFASQTAVDLFAIIQALANPSNDRYLRGAIASELFCYDATTLDAL 646 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-AGGERRLTDILHI 690 +DE W +VE+F + Q+W+++G+M L LM IAE L+ G+RRLTD+ H+ Sbjct: 647 FSDEWQWQKLVEQFAYWHQLWQRQGLMMALNILMRHFKIAERLVGQYHDGQRRLTDLRHL 706 Query: 691 SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 ELLQ + E ++ W H+ EPD++ QQ+RLE++++LVQI+T H SKGLEYP Sbjct: 707 VELLQVQSQLMSGESQILHWFQAHLAEPDNDNEGQQIRLETEQNLVQIITQHTSKGLEYP 766 Query: 751 LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 LV++PF + R ++A YH+ V+D A E++ LA+ ERLAED+RLLYVALTR+V Sbjct: 767 LVFIPFASRCREMKEAIYHNEKDG-LVIDFLGADENLALADHERLAEDIRLLYVALTRAV 825 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK-GEPQDAAGLRTCIEALC---DDDIA 866 +C +G+ +K ++ + Q+ALGR+L G A + ++ L D D Sbjct: 826 HYCFIGL--WNNSHPQRKKESQLMQTALGRVLFNQGTQVSDAVITQRLDDLSQTIDVDYL 883 Query: 867 WQTAQTGDNQ-------------PWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 TAQ + + + S A L A L + WR+TSYS + + Sbjct: 884 GFTAQDAERKATEFKQFLLSQDSKESLQTNSNAMLRAAVLPKPVTRRWRLTSYSAISSQQ 943 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEP 938 H D V S Sbjct: 944 HHEFVAPGQDEGADKLDVISAYASA 968 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 103/261 (39%), Positives = 147/261 (56%), Gaps = 17/261 (6%) Query: 925 DVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFE 983 D+D G E+ L F +GA G+FLH + E +DFT P++ + + EK G E Sbjct: 1032 DIDEVG----AEQEVLDQFTFVKGAQAGSFLHGVLESIDFTNPINLMDVIIEKGTWYGIE 1087 Query: 984 SQWEPVLTEWITAVLQAPL---------NETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 +W V+ +W+ VLQ+ L N +SLS L+ VEMEFYLP+ E + A Sbjct: 1088 QKWFAVVDKWLRDVLQSKLTAESSNIQQNGEHLSLSALAKNQVLVEMEFYLPLLE-VKAQ 1146 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYT 1094 + ++ Q P +F Q+ GMLKGFIDL +++G++Y+LDYKSN+LG + + Y Sbjct: 1147 TFNHILNQHIPQRQHH--YQFEQLNGMLKGFIDLTLQYQGKFYVLDYKSNYLGAEFADYH 1204 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQG 1154 +AMA AM+ H Y LQ LYTLALHR+L+ + +DY Y GG Y FLRG+ E G Sbjct: 1205 GEAMANAMEEHDYYLQAILYTLALHRWLKSKKSDYAYADDIGGAYYTFLRGMHSEKSGNG 1264 Query: 1155 IYTTRPNAGLIALMDEMFAGM 1175 ++ P LI +D +F G Sbjct: 1265 VFYLMPAQALIEDLDALFNGE 1285 >UniRef50_UPI0000E0F57F exodeoxyribonuclease V, beta subunit n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F57F Length = 1222 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 333/1245 (26%), Positives = 547/1245 (43%), Gaps = 116/1245 (9%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V L+ + L L LIEASAGTGKTF I + +++LL + +++ +LL+VT Sbjct: 7 VFSPLNVITLTLAQRHLIEASAGTGKTFNITRIAVKVLL--------VKQISITQLLIVT 58 Query: 64 FTEAATAELRGRIRSNIHELRIACLR-ETTDNPLYERLL--EEIDDKAQAAQWLLLAERQ 120 FT+AAT EL+ RI + + E + + +PL L+ + +A L A + Sbjct: 59 FTKAATQELKARIAATLQEFLTMLDQPQEQWDPLLRDLIIDNAVVTPDKARLILRQAILE 118 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTI+ FC RML ++F + FEQ +I+D + A D + + Sbjct: 119 MDEAAIFTINSFCGRMLTQSSFLTHRPFEQTIIDDSQSIYITAIHD---QFLALQNKVAY 175 Query: 181 QVVFETW--KGPQALLRDINRYLQGEAPVIKAPPPD-DETLASRHAQIVARIDTVKQQ-- 235 + + + P+ + L PV + DE + I + + ++ + Sbjct: 176 REALSAFGVETPEDFFATYHNVLLNNLPVEYPNETNIDELIQQSFQPIFSSLKVLRSECC 235 Query: 236 --WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE-KFSQR 292 + E+ L E++ + + +W+D + ++E + + + Sbjct: 236 LILSQYINEIKTLYETNYA-KVSMDVDIVLRWLDA-DVYFDDEGFVKSFFHGIRIRGYAK 293 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL--------VITRALAEIRETVAREKR 344 + KA T E+ Q I ++ +I L +I+ + +K+ Sbjct: 294 HFDTANKAHYLTVLQAFNESWKQAEKIKKKIAEVQHKLPHYSLIATLLNDIKTQASNDKQ 353 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-H 403 R+G L D + L + S E L A IR ++P+A+IDEFQDTD +QY IF +++ Sbjct: 354 RQGVLDHSDTIHLLYQEIMS-GNEQLIAYIRQQYPIALIDEFQDTDAEQYSIFHQVYPPK 412 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 E LL+IGDPKQAIY FRG D+FTY+ A + H+++DTN+RS P ++N N LF Sbjct: 413 NKELMLLMIGDPKQAIYGFRGGDVFTYLNAVKDACFHWSMDTNYRSTPSVINGYNTLFYG 472 Query: 464 TD----------------------------DAFMFREIPFIPVKSAGKNQALRFVFKGET 495 D I + + + +A K E Sbjct: 473 LDITQSKLSSMTSWATSLSDAPNTEPPVPEKELFDYHIQYNWILATSLAKANNTPLKDEC 532 Query: 496 QPAMKMWL----MEGESCGVGDYQSTMAQ-----VCAAQIRDWLQAGQRGEALLMNGDDA 546 A + EG AQ A +I+ L + G+ Sbjct: 533 SDAGTHFFHYQMQEGNELQPAMLDKISAQILMSKWVANEIQRLLTSVTLGD--------- 583 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R V+ +DI++LV R + ++ + SV LSNR+S+F + +A + L ++ Sbjct: 584 RLVQPADIAILVNKRAQGDLIKRVFAQCGLNSVILSNRNSIFTSQQATNLYRFLHGLLNF 643 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 +E ++ LAT +MG D+ L++ + W+ G++ ML ++ Sbjct: 644 NQERPFKTMLATDLMGCQPEDLYALDSRPDDIEQYKLAAHQLLHKWQDEGILVMLTHVLK 703 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 R ER +T+ + +++LL E +L + + + A Sbjct: 704 TR--FTLYGDCLDAERIMTNYMQLADLLNEFERTNPLPSMTASFLYEKLAAGN-EADEYY 760 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPF-------ITNFRVQEQAFYH-DRHSFEAVL 778 RLESD L++IVTIH SKGLEYP+V++PF + N + + FY + L Sbjct: 761 QRLESDSELIKIVTIHGSKGLEYPIVFVPFDSFGNRDLINSKAKFTTFYDTNAQEKRHFL 820 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 +++ + +A+R E LRLLYVA+TR+ C LG + +A+ Sbjct: 821 ARLPVKDAIQIEQAQR--EALRLLYVAITRAAHRCYLGYQSIHYADN----------TAI 868 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT-GDNQPWQVNDV--STAELNAKTLQR 895 +L K + +EAL D + + T DN + + +L A T Sbjct: 869 HHMLAKVADTHDYSVIEYMEALAGADSSLFASHTIPDNLHLSMYSKLSNQPDLKALTYTG 928 Query: 896 LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF--PRGASPGT 953 WR+ SYS + R I + D A S ++ P +F +GA+ G Sbjct: 929 PTQSQWRIYSYSSIVNRTKEIDLNAKTHSDDHAKSDRSSDKQDDTLPLRFTLTKGANAGQ 988 Query: 954 FLHSLFEDLDFTQPVDPNWV-REKLELGGFESQWEPVLTEWITAVLQAPL----NETGVS 1008 LH++ E DFT+ +D + +E L+ + W+ VL P+ +++ Sbjct: 989 LLHNVLEHSDFTEALDNTLIEQECLKFLPDHQNDIDAIASWLDEVLSTPIYHAHSDSNFM 1048 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 L QL N E +FY P+ + IAS L L++ + P L + GM++GFIDL Sbjct: 1049 LKQLPKANTLREPQFYFPLGDTSIAS-LGKLLQHHRDENT-LPNLATDMLEGMMQGFIDL 1106 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 +F G+Y++ DYKS LG YT A+ A +Q+ +YDLQY +Y LH +L + D Sbjct: 1107 IFEVNGQYFVCDYKSTHLGNGFEGYTPDALLADIQSKQYDLQYLIYVWVLHLHLSLVLPD 1166 Query: 1129 YDYEHHFGGVIYLFLRGVDKEHPQ-QGIYTTRPNAGLIALMDEMF 1172 Y+ H GGV YL+LRG+ + P GIY + + + + F Sbjct: 1167 YEPSRHLGGVYYLYLRGMSPQAPAHSGIYFKPISMTDLQYLAQTF 1211 >UniRef50_B0VLS1 Exonuclease V, beta chain n=13 Tax=Acinetobacter RepID=B0VLS1_ACIBS Length = 1232 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 312/1261 (24%), Positives = 525/1261 (41%), Gaps = 147/1261 (11%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70 + + G LIEASAGTGKT+T+++L +R+ L A Sbjct: 13 IDIEFSGLHLIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAA---------A 63 Query: 71 ELRGRIRSNIHEL-------------RIACLRETTDNPLYERLLEEIDDK-AQAAQWLLL 116 EL+ RIR+ + E I E + L + +L+ + A A + L L Sbjct: 64 ELKSRIRARLVETHRYLDAKRSLTEKEILLQAEQESDLLLQHILKHFATRIAYACERLKL 123 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 Q+DE V T+ F Q++L AFESG + Q+ +D Q D R P Sbjct: 124 VIDQLDELFVGTLDSFSQKLLREFAFESGKIERAQITDDAKTYSRQLIHDVLREWIQSQP 183 Query: 177 REIAQVVF--ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA--QIVARID-T 231 + + ++ K + ++ + L + K P Q+ A ID + Sbjct: 184 QTVIDALYLAGELKSVDSFVKLVEDSLNFSSAHFKLPEKPTIQFEQLAQLKQLAAEIDIS 243 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE---- 287 + + + G+ + + FN+ ++ + ++ ++ + SL Sbjct: 244 LLEPYYSLDGDHYKHVSGTIFRNGAFNKL-FSECLPQLLQVLKQSDSILVFDGSLAVQRE 302 Query: 288 ---KFSQRFLEDRTKAGGET------PRHPLFEAIDQLL------AEPLSIRDLVITRAL 332 KF + + + +HP + I QL AE + + Sbjct: 303 LVFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQLFGVLKNYAEQFDQLHIYLKAYF 362 Query: 333 A-EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 E+++ + + + +GE F + L AL+ E G+ A ++ R+P+ ++DEFQDT+ Sbjct: 363 CVEVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTNQ 422 Query: 392 QQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA----HYTLD 444 Q + IW H ++++GD KQAIY FRG D+ T++ A ++ A Y L Sbjct: 423 DQDDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDIQAKHGREYKLI 482 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N RS +V V+ LF + D ++ + P+++ + + + + + P WLM Sbjct: 483 HNHRSVADLVEVVDALFQRQID--FGEQVQYDPIRAGTRPHPV-LIDQNQPNPHPLRWLM 539 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + + T AQ A +IRD L G+ + + DI+VL R+ Sbjct: 540 LKD-------KETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGL 592 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 +V+ L L I V ++ SVF+ AQ++ LL A+ P E ++ AL + + ++ Sbjct: 593 DKVQFELERLGIR-VNRPSKRSVFDCTIAQDVGALLTAIFHPYDEAKVKRALISRLFAMD 651 Query: 625 ALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA--TAGGER 682 + L + FD R++W +G + + ++ I +NL+A + ER Sbjct: 652 LKQLLQLEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNER 711 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 + ++ H++E+L + + + L W + + P + RL S+ VQ++TIH Sbjct: 712 VVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAG-VQLMTIH 770 Query: 743 KSKGLEYPLVWL-----PF-----ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVD---- 788 +SKGLE+ +V+L PF NF Q+ + + A ++ Sbjct: 771 QSKGLEFKIVFLLGADTPFRENNKTLNFSTQDITVSESAQTLTQRVVAIADKTYLNETEL 830 Query: 789 -LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 E LAE RL YVALTR+ L++ K S L + EP Sbjct: 831 KQHEERALAEQNRLWYVALTRASHRVY----ALLQDTDGKS------VSGLAFWKNRAEP 880 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 C D+I + + +N + E+ A+ + TS+S Sbjct: 881 FQHRC--------CTDEIILEQPPAARHLNQHINII---EIQAQHFPDQRFYSRGKTSFS 929 Query: 908 GLQQRGHG-------IAQDLMPRLDVDAAGVASVVEEPTLTP-----HQFPRGASPGTFL 955 L Q +Q L D VE T P FPRG G FL Sbjct: 930 YLAQHLRHKVGTDLLASQSHEAVLAEDELDQVISVETATAQPISWIKSNFPRGTLAGNFL 989 Query: 956 HSLFEDLDFTQPVDPNWVREKLELGG--FESQWEPVL---------------------TE 992 H +FE +DF WV E + S W+ +L E Sbjct: 990 HEIFEHIDFQ--CSDEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAE 1047 Query: 993 WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP 1052 W+ +L PL + G L+QL + E FYL +S+ ++A + + + F P Sbjct: 1048 WLQEILSTPLYQ-GFRLNQLQPEHYLSECPFYLALSDRVLA--MKRIQQLFAEYGMEMPE 1104 Query: 1053 LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 L + L G IDLV+ RY++ DYKSN+LGE+ + Y+ +++A +M Y LQ Sbjct: 1105 LLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGENLADYSVESIAQSMALASYWLQAG 1164 Query: 1113 LYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 LY +ALHRYL+ ++ +YD E H GG YL+LRG++ E +QG Y +P+ + +D + Sbjct: 1165 LYLVALHRYLKVKMQNYDIEQHLGGATYLYLRGMNGE-AEQGYYYWQPSTEFVLRLDAIL 1223 Query: 1173 A 1173 Sbjct: 1224 G 1224 >UniRef50_B5IMW6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMW6_9CHRO Length = 1248 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 349/1282 (27%), Positives = 527/1282 (41%), Gaps = 157/1282 (12%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + + PL+ G RL+EASAGTGKTF++A L LR + + + +LLVV Sbjct: 1 MTSRFEAHTFPLEPGLRLLEASAGTGKTFSLAHLVLRYV--------SEAEVPLRQLLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETT--------DNPLYERLLEEIDDKAQAAQWL 114 TFT AA AELR RI + R D L L A L Sbjct: 53 TFTNAAAAELRDRIGQRLQTALGHLDRGEAAVETGNPVDPSLEAWLQWARPRAALLRAPL 112 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LLA +D A + TIHGFC R L A E+G E QL D + L Q C D+WR+ Sbjct: 113 LLALEDLDGADITTIHGFCLRTLQRQALEAGQPPELQLDSDAAPLVRQVCHDYWRQQVLA 172 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD----DETLASRHAQI-VARI 229 LP + V KGP+AL+ D+ + L G+ + P PD D+ LA + + +R Sbjct: 173 LPPHLLDGVQRLVKGPEALV-DVLQTLDGDPALAVDPLPDGMEADQPLAPQLESLWQSRW 231 Query: 230 DTVKQQWRDAVGELDAL-------IESSGIDRRK-FNRSNQAKWIDKISAWAEEETNSYQ 281 D + W+ L+A G + ++ + +S W + + + Sbjct: 232 DRFQLLWQQHGEALEAELRAAAGHWRDLGASKTTPYSPKPRKDRCQALSQWIQHQGSKGD 291 Query: 282 LPESLEKFSQRFLEDRTKAGG--------------------ETPRHPLFEAIDQLLAEPL 321 +LE Q+ L++ G P+ PL EA+ L P Sbjct: 292 YAATLE---QKELKEYFHPGAFLKVARPIEATASGPAAREPSLPQRPLLEAVADLREGPA 348 Query: 322 SIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA 381 + V+ A R +A + R+G +G+ +L LD E+ L A+ R+ Sbjct: 349 ---EAVLLHAAHWGRRELAHRRERQGRMGYGQLLESLDPGDDPEAPCPLLDAVGERYSAV 405 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH- 440 ++DEFQDTDP Q+RI R + + L+L+GDPKQAIY FRG ++ TY A + A Sbjct: 406 LVDEFQDTDPIQWRILSRAFDARRHR-LVLVGDPKQAIYRFRGGELATYRLAYRQAAADG 464 Query: 441 --YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI----------PVKSAGKNQALR 488 LDTN+R+ P ++ +N L + P P G L Sbjct: 465 GISRLDTNYRATPSLIAGLNALMAPGLPRSGLAVPPVQPPPSPSGWSAPGGEGGDAPTLS 524 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP 548 ++ G +PA + S + +A++ AA+IR GEA Sbjct: 525 LLWLGSDRPAGEA--PPTTSAVEQELPDRVARLVAAEIR-------TGEA---------- 565 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 +D+ +LV + ++A Q+R AL I S +S+ D VF + A + LL + P Sbjct: 566 --PADLCLLVSTHRQAGQLRVALARAGIASRLVSDGD-VFASDGATALQRLLDGLAHPGD 622 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSAR 668 LR A+ ++G +A I ++ W + E+ R + G++ +L AL+ Sbjct: 623 PRRLRLLAASPLLGWSAGAIAAAGAEQ--WSALSEKLLRGRDGLPRLGLLGVLAALLDDE 680 Query: 669 NIAENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASS-QQ 726 +A L G R L D+ + LLQE T A WL Q L PD + Q Sbjct: 681 GLAR--LGLEG--RVLADLNQCALLLQERIHTDQLGADAAAEWLRQRRLAPDPSPPESHQ 736 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE----QAFYHDRHSFEAVLDL-- 780 + + V +VT+H+SKGLEYP+V P++ + VLDL Sbjct: 737 PNSDVEDEAVWVVTVHRSKGLEYPVVICPYLWKAPHANPRGLGLRWQPSDRTGPVLDLHL 796 Query: 781 ----NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGD------KKGD 830 ++++ A L E R YVA TR+ L P+ + G+ Sbjct: 797 GSRWGRGHQALEQHRAAELQEAERRAYVACTRAKRRLLLAWGPVKGQAGNPLHPWLLAAQ 856 Query: 831 TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN- 889 + + +G+ + L + A + P + +T L Sbjct: 857 AALADADDDPYATQGDGELRQALELGLAARQVPMVLMTVPPAAGPLPGRPPATATEPLTL 916 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIA-QDLMPRLDVD----AAGVASVVEEPTLTPHQ 944 QR +W +SY+ + H A Q L + D +A+V +EP Sbjct: 917 GPVPQRRLDHSWGRSSYTSWTRGSHAAAPQALEEGRETDALAREPELAAVDQEPWPGESP 976 Query: 945 F---PRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITAVLQ 999 PRG+ G LH + E LD+ +P VR +LE G + + + Sbjct: 977 LADIPRGSRAGDCLHRILESLDYQRPATQQSEAVRRELERSGIGRDHLEDVLSGVERLRL 1036 Query: 1000 APLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS---AGCPPLE 1054 +P+ L+ L ++ EM F L + P+ + L R S L Sbjct: 1037 SPMGGPLGDFRLAGLERGSRINEMNFDLTLG-PVTSDSLARPFRDHPGGSFGAGYADQLA 1095 Query: 1055 FMQV--RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA----------YTQQAMAAAM 1102 + V RG L G IDLVF H+GR+++ D+KSNWLGE + Y A+AA M Sbjct: 1096 ALSVQGRGFLTGSIDLVFCHQGRWWVADWKSNWLGERGADGQPLHCGPRHYGAAALAALM 1155 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD------KEHPQQGIY 1156 A+ Y LQ LY +ALHRYLR R+ YD H GG Y+FLRG+ ++ +G Sbjct: 1156 AANHYPLQAHLYLVALHRYLRWRLRGYDPARHLGGYAYVFLRGLAEPSEALRQRAGEGAV 1215 Query: 1157 -----TTRPNAGLIALMDEMFA 1173 P + +D Sbjct: 1216 LPGLAVECPPLERLLALDRALN 1237 >UniRef50_Q3AX66 DNA helicase/exodeoxyribonuclease V, beta subunit n=4 Tax=Synechococcus RepID=Q3AX66_SYNS9 Length = 1208 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 315/1254 (25%), Positives = 501/1254 (39%), Gaps = 134/1254 (10%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 +AE D PL+ G RL+EASAGTGKTF +A L LRL+ +E LLVV Sbjct: 1 MAERFDANTYPLKPGIRLLEASAGTGKTFALAHLTLRLIT--------EAAYPLEALLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTD------NPLYERLLEEID---DKAQAAQW 113 T+TEAA ELR RI + + + + + +P+ E+ D+ + Sbjct: 53 TYTEAAAEELRSRIGQRLQQALVGLEQLENEMFPSAPDPVMAAWWEQCTASADRRIRIRR 112 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 LL+A Q+D A + TIHGFC+R L A ++G E QL D + L+ + W++ Sbjct: 113 LLVALEQLDRADIATIHGFCRRSLRRLALDNGAAIEPQLESDAAALQAEVVQYLWQQELL 172 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 LP E Q + + PQ + R P + + + Q+ I+++ Sbjct: 173 TLPDEQLQGLRQRGLSPQTFGAALARLDGDPNPRLAGDSTSVDRQSPLRDQLPCWIESLW 232 Query: 234 Q----QWRDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWA--EEETNS 279 W L++ ++ + ++ + I+ W + S Sbjct: 233 HAFQSHWESDHAALESGFRAAAAQWKSQGCGSTSPYSAKPRTDRCAVINQWIAIQNGVPS 292 Query: 280 YQLPESLEKFSQRFLED------RTKAGGETPR---HPLFEAIDQLLAEPLSIRDLVITR 330 S+EK + + K G + P L AI L EPL + V Sbjct: 293 LAAIASVEKPLKEYFHPGSWCRMARKCGEDEPSLVASALQSAIGALWDEPL---ERVWRY 349 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 L E + + RRG + F +L+ +D + A ++ R+ M+DEFQDTD Sbjct: 350 LLERGLEELRERRGRRGAITFAGLLAAMDP---GDGQVDWLAPLQERYRAVMVDEFQDTD 406 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA 450 P Q+R+ RR + + LLL+GDPKQAIY FRG D+ TY++AR +V L N+R+ Sbjct: 407 PVQWRLLRRAFGDRIHHLLLLVGDPKQAIYRFRGGDLGTYLEARQQVDRIDHLLDNFRAT 466 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 +++ +N L + EIP + ++ + T + L Sbjct: 467 ASLMDGLNTLMAPGM-PRSHLEIPAVRAQAVDQ-------VSPTTAALQLLELELDTPAS 518 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDA 570 + + Q AA + + L+ + + SD+ VLV Q+A +R A Sbjct: 519 RTALEQQLPQHLAAVVFEILEGPDQPD-------------PSDLCVLVSRHQQATDLRRA 565 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L IPS ++ D V E+ A + LL A+ P + LR +++ +M + +E Sbjct: 566 LGAAGIPSRLVTQGD-VLESEAALVVQRLLDALADPGDDRCLRLLVSSPLMNWSLEAME- 623 Query: 631 LNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHI 690 +E D + E+ + + K G+M L L+ + A+ L+ G R L D+ + Sbjct: 624 ---NEGGLDQLAEQLRLWERALPKLGLMGCLAQLLEGQRTAD--LSERG--RMLGDLQQV 676 Query: 691 SELLQEAGTQLESEHAL-VRWLSQHILEPDS-NASSQQMRLESDKHLVQIVTIHKSKGLE 748 L+QEA + + A WL + L P + ++Q + V +VT+H+SKGLE Sbjct: 677 GRLVQEAMHRQGLDSATAANWLRRERLHPTTPVPEARQPHSDQADQAVAVVTVHRSKGLE 736 Query: 749 YPLVWLPFITNFRVQEQAFYHDRHSFEAVL-----DLNAAPESVDLAEAERLAEDLRLLY 803 YP+V P++ QE + A + +AE RL Y Sbjct: 737 YPVVICPYLWQAPRQESGPLWRETGDGRWFIAIDSHWGKGHRAAQQATDDAMAEAERLAY 796 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL--QKGEPQDAAGLRTCIEALC 861 VA+TR+ + + G A+ + + D A + L Sbjct: 797 VAMTRARSQLMVVWVRSTGQEGAPLPCWLFGADAIHDSVDQFNDDRLDLALSERGVSLLR 856 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLM 921 +Q W+ +T R +W SYS Sbjct: 857 ----RVLPDPLLPSQRWRSLPSEQPLGLGETPGR-IDRSWGRASYSAWISAPVDPVVH-E 910 Query: 922 PRLDVDAAGVASVVEEPTLTPH-----QFPRGASPGTFLHSLFEDLDFTQPVDPN----- 971 D D + P L P FPRGA G LH + E + + + Sbjct: 911 QGRDPDPGAEECSLTGPELWPEQGPLADFPRGAVAGDCLHRILEQIPYQAADADDPSLLD 970 Query: 972 -----WVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFY 1024 + +L G + + ++ E + VL+ PL + LSQL + + E+ F Sbjct: 971 SLRAAVIDSELRRAGLDCNLQSMVMEGLGYVLKTPLGGPLEQLQLSQLGLKQRIHELSFD 1030 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV----RGMLKGFIDLVFR--HEGRYYL 1078 LP+ + + G + RG L G IDLVF H+ R+++ Sbjct: 1031 LPVGHVRTKDLVQAFHCSPNARFGGRYIDHLATLGVNSRGFLTGSIDLVFCDPHQSRWWV 1090 Query: 1079 LDYKSNWLGED----------SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 LD+KSNW+GE Y Q AM M H Y LQ LY +ALHR+L R+ D Sbjct: 1091 LDWKSNWIGERRSEGSPGRCGPRHYHQDAMQEQMIHHHYPLQAHLYLVALHRHLSWRLPD 1150 Query: 1129 YDYEHHFGGVIYLFLRGVDKEH---------PQQGIYTTRPNAGLIALMDEMFA 1173 Y+ E H GG +Y+FLRG+ + G + +D + Sbjct: 1151 YNPEQHLGGYVYVFLRGMPGDQLVSLEDSASVGPGRLVEPAPLERVLALDRALS 1204 >UniRef50_A9BB02 Possible UvrD/REP helicase subunit B n=2 Tax=Prochlorococcus marinus RepID=A9BB02_PROM4 Length = 1265 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 285/1295 (22%), Positives = 523/1295 (40%), Gaps = 153/1295 (11%) Query: 2 SDVAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 + +P PL+ G RLIEASAGTGKTF++A L LRLL + ++ E+L Sbjct: 1 MGIESEFNPNTFPLEPGVRLIEASAGTGKTFSLAHLVLRLLT--------EKQHSINEIL 52 Query: 61 VVTFTEAATAELRGRIRSNI-------HELRIACLRETTDNPLYERLLEEIDDKAQAAQW 113 VV+FT A+ AE++ RI + + + D L E L + I+D + W Sbjct: 53 VVSFTRASAAEIKARITNRLIFALKGLENPSKEYKNKHIDQVLDEWLKKFINDIQRRMHW 112 Query: 114 ---LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFW 168 LL A +D+A + TIHGFC+R L + ESG E I + L + ++W Sbjct: 113 VNHLLDALTNIDQADITTIHGFCRRTLQRDVIESGSAIEPHPIAEGEIKKLVNEIAHEYW 172 Query: 169 RRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR 228 ++ L + + + + +++ + + Q + + + + Q Sbjct: 173 IQNVLSLAPQHLKGIKQAGINAESIAKKVLAIDQDPSLKLSIKRTEVDVSKPLKEQFNTN 232 Query: 229 IDTVKQQ----WRDAVGELDALIESSG--------IDRRKFNRSNQAKWIDKISAW---- 272 + T + W + +LD ++ +D + ++ + + +++ W Sbjct: 233 LKTCWESFISSWEEYGSDLDNELKKIASSYREIGIVDTKPYSPNPRKNRYQELNEWINIF 292 Query: 273 -AEEETNSYQLPESLEKF-SQRFLEDRTKA-------------GGETPRHPLFEAIDQLL 317 + + P S E +Q+ L+D R L +AI L Sbjct: 293 KCSQYGSKKSKPISYEDIRTQKLLKDYFHPLKLAEVERRNQLDYSSLIRPKLQQAIADLF 352 Query: 318 AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG-------EVL 370 +P +LV A+ + E++ ++ + G + F D L AL ES L Sbjct: 353 DKPA---ELVFIHAVGSVLESLRLKRLKSGFISFSDQL----KALDPESNCSVKNNFPKL 405 Query: 371 AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY 430 +R R+ V +IDEFQDTDP Q+RIF ++ + L+++GDPKQAIY FRG D+ TY Sbjct: 406 QERLRQRYKVILIDEFQDTDPLQWRIFNTVFGKSSKHLLVMVGDPKQAIYKFRGGDLNTY 465 Query: 431 MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV 490 + AR E +L TN+R++ +++S+N++ S + + +KS K + L Sbjct: 466 LLARKEADRVDSLLTNFRASAPLLSSLNQMMS---CGLKYSALNVPSLKSGSKRKLLPLS 522 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 + + + ++ + ++ ++ + L + + Sbjct: 523 TESHS-----LEILTPKPSSSEKVLNSSVPPLRNKVEQLIPNIVTNAILELINKPDSELH 577 Query: 551 ASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 +DI +LV +A +R +L+ IPS + N+ +FE+ A + + + +P + Sbjct: 578 PNDICILVNRHSQANDIRLSLSKSGIPSRLI-NKGDIFESEAATILQRFIDCLSSPNSID 636 Query: 611 TLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNI 670 +R + +M + ++ + D ++ +F + + G++ L + ++NI Sbjct: 637 NIRLLACSPLMQWDINKLKD-AEETKEIDDLIIQFTNWGNELNELGLIGCLSNFLESKNI 695 Query: 671 AENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILE-PDSNASSQQMR 728 A L+ G L D+ ++L+QEA Q + RWL Q + D +Q Sbjct: 696 AS--LSRKG--TLLGDLFQCAQLVQEAVHNQGLNARGAARWLKQQRTKLLDPTPEDRQPN 751 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR-VQEQAFYHDRHSFEAVLDLNA----A 783 + + + ++TIH+SKGLE+ +V P++ + D + ++ +N Sbjct: 752 SDIAEEAINVITIHRSKGLEFKVVICPYLWQSPSSPRGPLWRDDVKKQWLISINPGWGNG 811 Query: 784 PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ 843 + +D A E E RL YVA+TR+ + ++ + ++L Sbjct: 812 NQIIDSAIVEANQEAERLAYVAMTRAQDKLIVIWIAASKQENNPLKFFLFGPNSLD---A 868 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 K E + T ++A + Q W D + T +R +W Sbjct: 869 KAEDLTFEKMNTWVKANNSNISIRQVDIGKVKGYWDKFDDKSILKLGPTPKRKLDKSWGR 928 Query: 904 TSYSGLQQRGHGIAQDLMPRLDVDA---------------AGVASVVEEPTLTPH----- 943 SYS + + + + +D V + + L+ + Sbjct: 929 HSYSSWISSTYRLNERPLNPDAIDEGKDLEQEVVNLENRNPDVTTFYQRENLSDYNWSKQ 988 Query: 944 ----QFPRGASPGTFLHSLFEDLDFTQPVDPNW----VREKLELGGFESQWEPVLTEWIT 995 FPRG G LH + E ++F P+ + ++L G + + + + Sbjct: 989 GPLQNFPRGPIAGECLHKILERINFRHPISCKDSELVIVDELRRSGIDEKHRVDVQVALE 1048 Query: 996 AVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 VL + ++ + + RNK E+ F L +S+ + L + + Sbjct: 1049 RVLNIKMGKSLGNLRFKDIDNRNKINELGFDLCLSKNRQPIKTSDLEKTLHSCTKRRFGK 1108 Query: 1054 EFMQ--------VRGMLKGFIDLVFRHEG-----RYYLLDYKSNWLGE----------DS 1090 + RG L G IDLVF + R+++ D+KSNWL Sbjct: 1109 AYSDQIKELNIYSRGFLTGSIDLVFNDQNEFSQKRWWVADWKSNWLANHPTNNLTTYCGP 1168 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE- 1149 + Y+ M M H Y LQ LY +ALHR+L+ R+ Y H GG +Y+FLRG+ + Sbjct: 1169 AHYSASRMEEEMMHHHYLLQANLYLVALHRFLKWRLPGYSPNKHLGGYVYVFLRGIPSQD 1228 Query: 1150 ---------HPQQGIYTTRPNAGLIALMDEMFAGM 1175 + G+ +A + +D + Sbjct: 1229 EINSIPRNSNEMPGLIIEEASAQTVLELDSLIENG 1263 >UniRef50_Q6FF16 Exonuclease V, beta chain n=2 Tax=Acinetobacter RepID=Q6FF16_ACIAD Length = 1234 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 304/1279 (23%), Positives = 516/1279 (40%), Gaps = 147/1279 (11%) Query: 1 MSDVAETLDPLR-LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + P+ + G LIEASAGTGKT+T+++L +R+ L Sbjct: 1 MTKSKVSYQPITEIEFSGLHLIEASAGTGKTYTLSSLMVRIFLEKYLPQQVIATTFTRAA 60 Query: 60 LVVTFTEAATAELRGRIRSNIH-------------ELRIACLRETTDNPLYERLLEEIDD 106 AEL+ RIRS +H E I + +PL E LL++ Sbjct: 61 A---------AELKARIRSRLHQTLTYLQECRGLTESEILQKAQQETDPLLEYLLQQFSL 111 Query: 107 K-AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACA 165 + A + L L Q+DE V T+ F Q++L AFESG + + +D Q Sbjct: 112 RIGYACERLKLVLDQLDELFVGTLDSFSQKLLREFAFESGKIERADITDDAKAYTRQLIH 171 Query: 166 DFWRRHCYPLPREIAQVVFE--TWKGPQALLRDINRYLQGEAPVIKAP--PPDDETLASR 221 D R P+ + ++ K A + + L + + P D + Sbjct: 172 DVLRAWIQAQPQALIDGLYNMGALKSVDAFVGLVESSLNFSSAKFQQQQSPEIDLYALEQ 231 Query: 222 HAQIVARID-TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 A + +ID T + GE + I S F+ + A ++ S Sbjct: 232 VAALACQIDVTPLSSYYQLDGEYYSFIHGSSFRNHGFHALFVQHIPCLLKALQQDSVLSI 291 Query: 281 QLP------ESLEKFSQRFLEDRTKAGGET------PRHPLFEAIDQLL-------AEPL 321 P E+ +KF ++ +++ +H + + Q++ A+ Sbjct: 292 FDPAFKASREAADKFIEKLEQEKIFKKCPADVSDGFYQHAVVAQLKQVIQTLQHYQAQFE 351 Query: 322 SIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA 381 + + E+++ + + + +GE F +S L AL+ E G+ A ++ R+P+ Sbjct: 352 QLDHALKAYLCIEVKQRLPQVLQEKGETTFSQQISTLAEALKGEQGQRFAIFVQARYPLI 411 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEV- 437 ++DEFQDT+ Q + IW H ++++GD KQAIY FRG D+ T++ A ++ Sbjct: 412 LVDEFQDTNQDQDDMLASIWRHPQRYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYQDIL 471 Query: 438 ---HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 Y L N RS +V V+ LF + + ++ + P+++ + + + + Sbjct: 472 HKQGREYKLSQNHRSVKPLVEVVDALFQRQPN--FGEQVIYDPIQAGSRAHPA-LMDRAQ 528 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 A W+M + +++ A+ A +IR L GE L +G + A DI Sbjct: 529 VNTAPLRWIMLQD-------KASEAEQVAWKIRALLNQASSGELYLKDGSVHHSIIADDI 581 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 +VL ++ + V+ AL L I V +R SVF+ + A ++ L A++ P E ++ Sbjct: 582 AVLSKNHKGLDDVQAALEYLNI-KVNRPSRRSVFDHVVAHDVGAFLTAILFPYDEAKVKR 640 Query: 615 ALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 AL + +MG + + L + + DG R+IW +G +P + ++ + +NL Sbjct: 641 ALLSRLMGFDLERLYQLEQSPVGLSDYMNQLDGLREIWLHQGFLPAWQRGLNIFQVWQNL 700 Query: 675 LATAG--GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 A ER + ++ H+SELL + Q + L W + + P + +L SD Sbjct: 701 GAKHSRENERAVVNLRHLSELLSKHSEQYQGAQNLYHWYLKQLRSPSEREWELERKLSSD 760 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITN-FRVQEQAFYHDRHSF--------------EAV 777 VQ++TIH+SKGLE+ +V+L R Q + R Sbjct: 761 AG-VQLMTIHQSKGLEFKIVFLLGADKPLRDQNKDLNFSRAEILDESTGQMQTKRVIAIA 819 Query: 778 LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 PE++ AE R+ YVALTR+ A Sbjct: 820 DKTQLTPEAIIQHTERATAEQNRIWYVALTRASHRVY----------------------A 857 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRL 896 + Q+ A + + + +P V++ L A L + Sbjct: 858 MLHDPQQKSKDALAFWKNQDSPFLHEYSIEEALLMQCPEPLTVHETPQKILIYAAPLPQQ 917 Query: 897 PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTP-------------- 942 TS+S L Q + + + E T T Sbjct: 918 RFYPRGKTSFSYLAQHLKPRVSYADTLVSMQTRPEQAEDERDTTTSIQYSQAAIQPIAWI 977 Query: 943 -HQFPRGASPGTFLHSLFEDLDFTQPVD---------------------PNWVREKLELG 980 FP+G G FLH +FE ++F Q + P ++ EL Sbjct: 978 KQNFPKGTLAGNFLHEIFEHINFNQTEEWITEIRRRFKNDYGSLWEMLYPVYIDAFPELN 1037 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 G E++ L +W+ VL+ PL++ L QL + E FYL +S+ ++A + + Sbjct: 1038 GDENRLYQWLADWLDDVLKTPLHQ-DFQLKQLQSGQFLSECPFYLALSDRVLA--MRRIQ 1094 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 + F P L G IDL++ R+++ DYKSN+LG D + Y A+ Sbjct: 1095 QLFIEYHIEMPEFLDAYSARYLNGSIDLMYFDGQRFHIADYKSNFLGTDQTHYDGLAIRE 1154 Query: 1101 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRP 1160 M Y LQ LY +ALHRYL+ ++ Y+ H GG YL+LRG++ H QG Y +P Sbjct: 1155 NMTHSSYWLQAALYLVALHRYLKVKLEHYEIAEHLGGATYLYLRGMNG-HTGQGYYYWKP 1213 Query: 1161 NAGLIALMDEMFAGMTLEE 1179 I +D + T ++ Sbjct: 1214 EDEFILRLDAILGYATEDK 1232 >UniRef50_B0RMH9 Exodeoxyribonuclease V beta chain n=8 Tax=Xanthomonas RepID=B0RMH9_XANCB Length = 1372 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 339/1134 (29%), Positives = 520/1134 (45%), Gaps = 111/1134 (9%) Query: 96 LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFE-QQLIE 154 L L + + + L A ++D AA+FTIHGFC R+L +A ESG F QL+ Sbjct: 157 LTAHLATGTETPSALRRRLQQAVEEIDLAAIFTIHGFCARVLREHALESGQAFAAPQLLA 216 Query: 155 DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD 214 ++ L + AD WR+ +V GP AL D+ +Q + P Sbjct: 217 NDRELLGEVAADLWRQR-AADAAMADDLVALWPAGPTALASDLRALVQQPELLPAVAAPT 275 Query: 215 DETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 + +R A A + ++ A + A E D R+ R + K +++ + Sbjct: 276 PDPQPARQAAAQAVVAALRAHGDAAYDAVAAAFEHKIFDGRRARRPSFDKAFEQLWQGSA 335 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGE--TPRHPLFEAI------DQLLAEPLSIRDL 326 E L+K + L + K G P PLF+A+ D ++ + R + Sbjct: 336 EAHWVLDDGGHLDKLLPQRLREFCKDGAHDRVPCSPLFDALAVWQQADAVVRQWEGQRRI 395 Query: 327 VITRALAE-IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 + AL + +A+ KR+R +DD++ + AL+ E L +R ++ +A++DE Sbjct: 396 RLLHALRDDAVLQLAQRKRQRRVQTYDDLVDGVARALQGPQAEALVQRLRAQYAIALVDE 455 Query: 386 FQDTDPQQYRIFRRIWHHQ-----------------------PETALLLIGDPKQAIYAF 422 FQDTD +Q++IF R++ + P L LIGDPKQAIY F Sbjct: 456 FQDTDDRQWQIFSRVFGPEHAASGEAFAPDDDADFDNAAGAPPPRLLALIGDPKQAIYGF 515 Query: 423 RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD--DAFMFREIPFIPVKS 480 RG D+ TY+ A + L+ N+RS PG++ +++ L++Q +AF+ I F PV+ Sbjct: 516 RGGDVQTYLAAATTAQRAPPLEHNFRSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQP 575 Query: 481 AGKNQALRFVFKGETQPAMKMW---------LMEGESCGVGDYQSTMAQVCAAQIRDWLQ 531 K + G PA+ +W + + G + C A IR WL Sbjct: 576 GTKRSDADLLRDGAAAPALTLWRAPAPPPPEKGKPKPWSAGRARELCTAACVAAIRGWLA 635 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 G+ G A + + RPV+A DI+VLVRS EA +++ AL + IP+V + + S+F T Sbjct: 636 GGRDGSASI----NGRPVQAGDIAVLVRSHGEATRIQQALGAVGIPAV-AAGKQSLFATD 690 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI 651 EA E+L LLQA++ P ++ LR+ALAT ++G +A I L +D ++ +R+ Sbjct: 691 EALELLALLQALLDPGDDSRLRAALATVLIGEDAAAIAALEHDGERHRRWQQQALDWRER 750 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWL 711 W++ G + ++ L + + LLA GERRLT+ L ++ELLQEA T+ H LV WL Sbjct: 751 WQRGGPLALVGDLGATHG--QRLLALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWL 808 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYH-- 769 ++ I D N +QQ+RLESD VQIVT+HKSKGLEYPLV+LP+I R + H Sbjct: 809 ARRIANADDNDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCV 868 Query: 770 ---DRHSFEAVL--------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 H + D + + + E+ AED RLLYV LTR+ + Sbjct: 869 VHAPPHGRQLHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGLTRAEHALWIATG 928 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 + ++AL +L+ A+ IA P Sbjct: 929 AFHQH----------ERTALAPMLRDPAALQASA--------GAGVIALDDTAPPATLPR 970 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEP 938 D + A+ QR +W V S++ L G L EP Sbjct: 971 LPADDAVQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMASATLASSGGSDEPPASEP 1030 Query: 939 TLTPHQF----PR--GASPGTFLHSLFEDLDFTQ-----------PVDPNWVREKLELGG 981 P + PR G G +H +FE DF + E L+ GG Sbjct: 1031 VSAPAEVEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQPAPEGQAAAILEALQRGG 1090 Query: 982 F-ESQWEP---VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 + + + + +LT + L L E G L+ + ++ EMEF+ + P L Sbjct: 1091 YAQDELDDGLAMLTRLVGHTLTVTLPE-GTCLAAVPEPQRRNEMEFHFAM-RPTRVDALL 1148 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 L+ +F ++ ++ G++ G IDL + +GR+Y+LDYKSN L AY A Sbjct: 1149 ALLHRFGVVTERQAFGARQRLEGLMTGLIDLTYCADGRWYVLDYKSNRL----PAYDPDA 1204 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRI-ADYDYEHHFGGVIYLFLRGVDKEH 1150 +A AM Y+LQ +YT+ALHR+LR R+ A YDY FGGV YLF RG+D Sbjct: 1205 LARAMAHSEYELQALIYTIALHRWLRFRLGASYDYARDFGGVRYLFCRGLDAAR 1258 Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 8/70 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS+ T L LPL G RLIEASAGTGKTFT+A L+ RL++ R L + ++L Sbjct: 1 MSNSPVTDPYLHLPLHGVRLIEASAGTGKTFTLATLFTRLVV--------ERQLRIGQIL 52 Query: 61 VVTFTEAATA 70 VTFTEAAT Sbjct: 53 AVTFTEAATQ 62 >UniRef50_A5GLW9 Exodeoxyribonuclease V beta chain n=2 Tax=Synechococcus RepID=A5GLW9_SYNPW Length = 1229 Score = 675 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 325/1271 (25%), Positives = 503/1271 (39%), Gaps = 160/1271 (12%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 +P R PL G RL+EASAGTGKTF +A L +RL++ R L ++ LLVVTFTE Sbjct: 12 FEPNRYPLNPGLRLLEASAGTGKTFALAHLVMRLVV--------ERELKLDALLVVTFTE 63 Query: 67 AATAELRGRIRSNIHELRIACL---------RETTDNPLYERLLEEIDD---KAQAAQWL 114 AA ELR RI + L TD L E L E D + A L Sbjct: 64 AAADELRDRIGKRLDGALQGLLCLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLL 123 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 L A ++ A + TIHGFC+R L A +SG + + +D L + D WR Sbjct: 124 LEALEALERADITTIHGFCRRTLRRQALDSGRSMDLSVDDDPQTLVEEVAHDLWREQVLT 183 Query: 175 LPREIAQVVFETWKGPQALLRDINRY-------LQGEAPVIKAPPPDDETLASRHAQIVA 227 L + + ++ L ++ R + +A VI + Q Sbjct: 184 LDPDDVAGLLQSGLREDTLTAELLRLDGDCGVRIAEDAEVIDTETALRDVFPIWLEQRWL 243 Query: 228 RIDTVKQQWRDAVGELDALIESSGI-----DRRKFNRSNQAKWIDKISAWAEEETNSYQL 282 ++ + Q DA+ D + ++R+ + +S W + + ++ L Sbjct: 244 QVGELWSQDGDALERCLRDCAQDWHSLGCKDTKPYSRNPRKNRAALLSTWLQTKNDTQSL 303 Query: 283 PESLEKFSQR-----------FLEDRTKAGGETPRHP---LFEAIDQLLAEPLSIRDLVI 328 P + F + K G + P P L AI +L P + Sbjct: 304 PIRYANVRNQDLLGTYYHPGVFAKTARKCGEDAPSLPRPELMRAIAELWDGP---GEQTW 360 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQD 388 L + + + ++RRG +GF +L L+ S S + A +R R+ VA+IDEFQD Sbjct: 361 RYLLIRGLQEIDQRRQRRGVVGFSGLLDALNPTDPSRSQAWITA-LRERYKVALIDEFQD 419 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 TDP Q+ + + + LL++GDPKQAIY FRG D+ TY AR++V L N R Sbjct: 420 TDPLQWNLLHQCFASSDH-LLLMVGDPKQAIYRFRGGDLQTYKTARAQVDRIDDLLDNRR 478 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES 508 + P ++ ++N L S E+ V + K ET P + ++ Sbjct: 479 TTPPLMEAMNHLMSP---GLKHSELSVPAVSA--KASCTPLTLPPETAPLQILAFNPDDA 533 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 G A D L +A + +D +LV ++A +R Sbjct: 534 DGSRSRTDLEA-TIPCFAADLLLQILGNDA---------SLTPADFCILVSRHRQAEAIR 583 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 D L+ + +PS +S D V + A E+ W L + P LR A ++M A + Sbjct: 584 DQLSKVGLPSRLISPGD-VLSSQGAGELQWFLDGLARPADNERLRRLAAGALMQWPAHTL 642 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 E D+ + + + G+M L L+ +A+ L+ G R L D+L Sbjct: 643 EA-CEQTGQLDLFAAKLQTLAEALPRLGLMGCLAQLLEGETLAD--LSIRG--RLLGDLL 697 Query: 689 HISELLQEA-GTQLESEHALVRWLSQHILEP-DSNASSQQMRLESDKHLVQIVTIHKSKG 746 + L+Q+A Q + WL + L P D+ +Q + V +VT+H+SKG Sbjct: 698 QCARLVQDAMHRQGLNAAGGADWLRRQRLHPPDNVPDQRQPYSDLAASAVAVVTVHRSKG 757 Query: 747 LEYPLVWLPFITNFRVQEQAFYHDRHSFEAV--------LDLNAAPESVDLAEAERLAED 798 L+YP+V P++ + + + + + + +AE Sbjct: 758 LQYPVVICPYLWEAPSPGKGPLWRLPAGDPTGSWRVALNPHWGSGQAAACADALDCMAEA 817 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 RL YVALTR+ H L A G+ + + L L + + Sbjct: 818 ERLAYVALTRAERHLVLFSA----------GEANPSGNPLDPWLSALADGNHPHISLHH- 866 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL--QQRGHGI 916 +Q W + A + +W +SYS H Sbjct: 867 ----------PRSPAAHQRWTPPRQNQTLQCAPVPKGALDRSWGRSSYSAWIASASNHHP 916 Query: 917 A-----QDLMPRLDVDAAGVASVVEEPTL-------------------TPHQFPRGASPG 952 + +L DVDA S + EP + FPRGAS G Sbjct: 917 SKRSNPHELEEGRDVDAGTDTSSLREPAVGLSSDVERELGDALPPRNGALRTFPRGASAG 976 Query: 953 TFLHSLFEDLDF----TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET--G 1006 LH + E L F QP + V +L G + + + I+ +L++P Sbjct: 977 DCLHRILEQLPFDQPVEQPANQELVARELSRSGLDLSLQDDVLSAISTLLRSPFGGPLGQ 1036 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF--------MQV 1058 + L+ L + + E+ F LP++ A + TL R F ++ + Sbjct: 1037 LRLADLHSGRRLHELSFDLPVAHAGSAVRASTLARAFRCDPKQRFGSDYAAQLETLDIHS 1096 Query: 1059 RGMLKGFIDLVFRHEG-----RYYLLDYKSNWLGED----------SSAYTQQAMAAAMQ 1103 RG L G IDLVF R+++ D+KSNW+GE YTQ AM M Sbjct: 1097 RGFLTGSIDLVFTDGDDLSTARWWVADWKSNWIGERDGEGQPLHCGPRHYTQAAMEEQML 1156 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 H Y LQ LY +ALHR+L+ R+ DY E H GG Y+FLRGV E G+ Sbjct: 1157 QHHYPLQAHLYLVALHRFLQWRLIDYSPERHLGGYAYVFLRGVS-EQGGSGVIIEPAPLQ 1215 Query: 1164 LIALMDEMFAG 1174 + ++ + G Sbjct: 1216 RLEHLNTLLQG 1226 >UniRef50_Q46K42 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Prochlorococcus marinus RepID=Q46K42_PROMT Length = 1261 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 287/1287 (22%), Positives = 525/1287 (40%), Gaps = 146/1287 (11%) Query: 1 MSDVAETLDPLRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+++ E P + PL G RLIEASAGTGKTF+++ L LRLL + ++ E+ Sbjct: 1 MTNI-EFFQPNKYPLSNGIRLIEASAGTGKTFSLSHLVLRLLT--------EKEYSINEI 51 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETT-------DNPLYERLLEEIDDKAQA-- 110 LVV+FTEA +E++ RI + T DN L E + I K +A Sbjct: 52 LVVSFTEATASEIKARIIERLILALKIIESINTNVKPYKIDNVLNEWVDLNITSKEKALY 111 Query: 111 -AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 A LL A ++D A + TIHGFC + L A E+G + +D L + ++W+ Sbjct: 112 IASLLLEALERIDNADITTIHGFCSKTLRREAIENGNNLNPTIEKDSYSLINEIVEEYWK 171 Query: 170 RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI 229 + + + +F++ + L+ ++ K D + S +Q+ Sbjct: 172 KEILEIEISELKGLFKSNFNRKNLIDVLSSLDNDPNNSFKQTFNDLKIEESLSSQLNNYS 231 Query: 230 DTVK-----------QQWRDAVGELDALIESSGI-DRRKFNRSNQAKWIDKISAWAE--- 274 +++ Q+ D+ E+ + S GI D + ++ + + +S W E Sbjct: 232 ESLWIKFTTIWEEKGQELEDSFREIAKDLRSQGIKDTKPYSSKPRKNRYELLSNWIEEYK 291 Query: 275 -EETNSYQLPESLEKFSQRF-------LEDRTKAGG-ETPRHPLFEAIDQLLAEPLSIRD 325 ++ SY+ ++ + ++ F L+ + K P+ + I L P + Sbjct: 292 EKKRPSYEDIQNQKLINEYFHPKNIYQLDMKHKINACSKEMEPILDIIGDLYDSP---GE 348 Query: 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLD------SALRSE-SGEVLAAAIRTRF 378 LV AL + + + K ++G + + D+L LD +A++ + + + + R+ Sbjct: 349 LVWEHALLWTKRELEKRKSKKGLINYSDLLKLLDPKNQNSNAIKDKVNHNNIYKNLEQRY 408 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 VA+IDEFQDTDP Q R+ ++ + ++ LL+IGDPKQAIY+FRG + TYMKAR Sbjct: 409 KVALIDEFQDTDPVQLRLLKKAFGNRSSHLLLMIGDPKQAIYSFRGGSLNTYMKAREACD 468 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 + ++ N+RS ++ ++NKLF D + + + + L G +P Sbjct: 469 QIHLMNANYRSTKSLILTLNKLF---LDGLIRSNLSTQELNPCSQEDLLEL--NGIKEPF 523 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 + L++ + ++I D + L + ++ + + SDI +LV Sbjct: 524 KILNLID---TNQKVKDQRIKLDSKSKIEDKIPKVIGSYLLELLSNNPKDLNPSDICILV 580 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 +A + L+ + IPS LSN +++F AQ + + +++P + L + Sbjct: 581 NRHDQAKNIHSYLSKIRIPSQLLSN-ENIFTREGAQILQIFINCIVSPHNQQKLALLACS 639 Query: 619 SMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 +M + D +D + +F +++ G++ L + ++IA+ + Sbjct: 640 ELMQWTKEKLIKSKIDGD-FDSLSSKFYELSKLFPTIGLLGCLSNFLEGKSIAD----LS 694 Query: 679 GGERRLTDILHISELLQEAGTQLE-SEHALVRWL-SQHILEPDSNASSQQMRLESDKHLV 736 L D+ S+L+ E + + + +WL SQ + Q V Sbjct: 695 NRGTLLGDLYQSSQLVDEQIHRQKFNALRASQWLSSQRFQSIEQIPEEYQPNSAISNSSV 754 Query: 737 QIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL----NAAPESVDLAEA 792 I+TIHKSKGL++ +V P++ ++ + + D Sbjct: 755 NIITIHKSKGLQFKIVICPYLWQKPPDRKSLLWKDNQNLLISKKYKWNKKYSSYQDFIRK 814 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK--GEPQDA 850 E L E R+ YVA TR+ + A + G+ ++ ++ E + Sbjct: 815 ESLNEAERIAYVAFTRAKKQLIVLWANAAGQEGNPLSGFLFGSESINLKIEDHTKEMMEN 874 Query: 851 AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL- 909 + ++ ++ D +T ++ W ++W S+S Sbjct: 875 SFMKRELKVDIQDIKTIET-----SKTWSQPKSEVKLSLGAIPTHQFENSWGRYSFSKWI 929 Query: 910 -QQRGHGIAQDLMPRLDVDAAGVASVVE-------------------------EPTLTPH 943 Q+ I +DL L+ D A + + Sbjct: 930 TQKNDELILKDLSDELNEDHAFKGEIEDMSFQEIDHLLVDKDQSIDRLEDQGWSKESPIG 989 Query: 944 QFPRGASPGTFLHSLFEDLDFTQPVDP----NWVREKLELGGFESQWEPVLTEWITAVLQ 999 FP+G GT LH + E +DF + + E+L + + + + + + Sbjct: 990 DFPKGPIAGTCLHKILERIDFNDIENQLKVSTIIEEELNIVNISNSFIEPINILLKRIAN 1049 Query: 1000 APLNET--GVSLSQLSARNKQVEMEFYLPI---SEPLIASQLDTLIRQFDPLSAGCPPLE 1054 PL + L+ ++ E++F +PI + P+ +L ++ ++ G + Sbjct: 1050 IPLGGPLGKFKMKNLNTKSSIKELKFDIPICHEANPINTLELSSIFKEDVQNKYGSDYIN 1109 Query: 1055 FM-----QVRGMLKGFIDLVFRHE-----GRYYLLDYKSNWLGED----------SSAYT 1094 + G L G ID VF ++++LD+KSNW+G S Y+ Sbjct: 1110 KLIDLKIHSSGFLTGSIDQVFADNPNHEIAKWWVLDWKSNWIGSSLSKEHRSSCGPSNYS 1169 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP--- 1151 M M H Y LQ +Y LALHR+L R+ DY + H GG IY+FLRG+ + Sbjct: 1170 ISRMDEEMYHHHYPLQAHIYLLALHRFLNWRLPDYSPQKHLGGYIYVFLRGLPDKEELEE 1229 Query: 1152 ------QQGIYTTRPNAGLIALMDEMF 1172 G+ I +D + Sbjct: 1230 KNFPQWTPGLIVEPAPIERIKKLDLLI 1256 >UniRef50_C1SHH7 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH7_9BACT Length = 811 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 260/848 (30%), Positives = 427/848 (50%), Gaps = 51/848 (6%) Query: 335 IRETVAREKRRRGELGFDDMLSRLDS-ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 + E + K++ +DD+++R+ + + +E ++ ++ +F A+IDEFQDTDP Q Sbjct: 1 MEEVLETHKQKNNIQSYDDLITRMRNSVMENEGHGNMSISVNRKFNAALIDEFQDTDPHQ 60 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGM 453 Y IF ++ +IGDPKQAIY+FRGAD++ Y+KA SE YTL N+RSAP + Sbjct: 61 YDIFNTVFGR-YGKPFFMIGDPKQAIYSFRGADVYVYLKAASEEGNQYTLTKNFRSAPEL 119 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 V++VN F Q ++AFM I +IP S G ++ L + QP M +W E Sbjct: 120 VDAVNSFF-QRENAFMEPRIEYIP--SVGGHKELALTVAEKPQPHMIVWETEKTKP---- 172 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 +A A I + L G A + + + V+ SDI+VL R+++E V++ALT Sbjct: 173 --EEIALSTARHISELLNKSSYGSAHI----NGKAVKPSDIAVLCRNKKEMTMVKEALTY 226 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 +P+V +S ++VF + EA EM+ +L AV++P ++ +++ALA+S G A +I + Sbjct: 227 CRVPAV-VSGSENVFSSDEAVEMVNILSAVISPFSQSHIKTALASSAFGYTAKEIYHI-T 284 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 + WD + EEF Y + RG PM + S R + + L GER+LT+++HI+EL Sbjct: 285 ETDQWDDITEEFRNYNDMISLRGFAPMFFHMASVRKLYKRLAKLPSGERKLTNLIHITEL 344 Query: 694 LQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 Q+ + + ++RW+ + I + +++++SD++ V I+TIHKSKGLEY +V Sbjct: 345 AQQFEANRKAAPQDILRWMKEKISNAEMRDEESELKMDSDENAVTIITIHKSKGLEYNIV 404 Query: 753 WLPFI----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTR 808 + PF+ N + + A YH F +LD+ E+++ + E E LR+ YVALTR Sbjct: 405 YTPFLMFSRGNNKRPDYAKYHKEDKF--ILDVAGTDEAIEKTQQEEQQEKLRIAYVALTR 462 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQ 868 + C T +SAL L+ + + +G ++A + Sbjct: 463 AKSVCFTAWGE----------GTGHDKSALAYLINGEQSKFDSG--RLHSFFRGSNVAIK 510 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA 928 Q ++ +++ N +T W++ S+S L + D Sbjct: 511 PLPDTAVQTYKGSEIQPTGKN-RTFTSEITPPWQINSFSRLIHSSSSVRDT-----DQFT 564 Query: 929 AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF---TQPVDPNWVREKLELGGFESQ 985 + L FP+GA GT LH E+ DF + V E+L+ F++ Sbjct: 565 MKDETSDSSGRLDIFTFPKGAKAGTCLHECMEETDFENFSALSVAETVEERLKAFSFDTD 624 Query: 986 WEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD- 1044 + P +T+ I +L ++ G L L + EMEF + ++P + + R Sbjct: 625 FTPAVTQNILTILNKDMH--GTCLKDLKQGDYIHEMEFQI-ATKPFRPEPVSEIFRNSGQ 681 Query: 1045 -PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 + L F ++G + GF DL+F G+YY+LD+KSN LG Y+ + M A M Sbjct: 682 NDYADAASTLSFDAMQGFMNGFADLIFCQRGQYYVLDWKSNHLGMTPENYSMERMHAEML 741 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 Y +Q +YTLALH +L+ + Y Y+ H GG IY+F+RG+ E +GIY RP Sbjct: 742 GSHYYMQMHIYTLALHMHLQRYLKGYSYDKHMGGGIYVFMRGIH-EKGNEGIYFHRPEKD 800 Query: 1164 LIALMDEM 1171 I ++E+ Sbjct: 801 TICRLEEL 808 >UniRef50_D0SDD3 Exonuclease subunit V n=2 Tax=Acinetobacter RepID=D0SDD3_ACIJO Length = 1250 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 314/1256 (25%), Positives = 512/1256 (40%), Gaps = 142/1256 (11%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 + QG IEASAGTGKTFT+++L +R+ LG AE Sbjct: 19 DMSFQGLHWIEASAGTGKTFTLSSLMVRIFLGAYLPNQVIATTFTRAAA---------AE 69 Query: 72 LRGRIRSNIHEL-------------RIACLRETTDNPLYERLLEEIDDK-AQAAQWLLLA 117 L+ R+R+ + E I +PL+ ++L + + A + L L Sbjct: 70 LKSRVRARLIETLRYFEGCQSLTEREIQAKIAAEQDPLFTKVLTDYAQRVGFAQERLKLV 129 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 Q+DE V T+ F Q++L +FESG + + +D Q D R P+ Sbjct: 130 IDQLDELFVGTLDSFSQKLLREFSFESGKIERADITDDAQSYTQQLIHDVLREWIQAQPQ 189 Query: 178 EIAQVVF--ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA-------R 228 + + + K QA + + L + + L I + Sbjct: 190 PVVNYLLLKQKLKTEQAYVPIVENSLNFASAQFQQVEKPTLDLTQFEQAIDQFTTLDVVQ 249 Query: 229 IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 I+ +K + G+ A++ R ++A E+ + P EK Sbjct: 250 IEGLKDYYAPE-GQYHAVLGKKWRTDALIQRILCQDLPAFLTALKEQRAYALFAP-HFEK 307 Query: 289 FSQRFLEDRTKAGGETP---------RHP-------LFEAIDQLLAEPLSIRDLVITRAL 332 + + TK +HP EA+ +L + + Sbjct: 308 TLKHLTDLATKKVLNKCAVDVLEQFEQHPVWRQVRSFLEALAELELNLDVLDAYLKYHLS 367 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 +E+++ + + +++ E F + L AL+ E G A ++ R+P+ ++DEFQDT+ Sbjct: 368 SEVKKRLPQVLQQKSETTFAQQIRTLSEALQGEQGRRFAQFVQARYPLILVDEFQDTNQD 427 Query: 393 QYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEV----HAHYTLDT 445 Q + RIW ++++GDPKQAIY FRG D+ TY KAR +V Y+L Sbjct: 428 QDDMLARIWRDVQRYHQGCMIMVGDPKQAIYGFRGGDMLTYNKARLDVLAKHGRQYSLKY 487 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N RS +V V+ LF + D ++ + PV++ + +GE ++ L+E Sbjct: 488 NHRSVQKLVQVVDALFQRQQD--FGEQVYYQPVEAGTRPHPALVDAQGENHVPLRWLLLE 545 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 + AQ A +IRD + G + + + + D + + A+DI+VL ++ Sbjct: 546 DK--------KNEAQQVAWKIRDLINQGIQQQLYVAD-DPLQFIGANDIAVLSKNHDGLD 596 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 +V+ L L I V ++ SVFE+ A+++ LL A+M P E +R AL + ++ ++ Sbjct: 597 KVQFELERLGI-LVNRPSKRSVFESQVAKDVGALLTAMMHPFDEAKVRRALLSRLLAIDL 655 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA--TAGGERR 683 + L + + +FD R +W +G + + ++ + +NL+A + ER Sbjct: 656 KQLLELEKQANGLSQFMADFDDIRDMWINKGFLSAWQYALNLFKVWKNLVAYQSRDNERT 715 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 + ++ H++ELL + Q + L W + + P + +L S+ VQ++TIH+ Sbjct: 716 VVNLRHLTELLSQHSEQFQGAQKLYHWYLKQLHLPAEREWELERKL-SNATGVQLMTIHQ 774 Query: 744 SKGLEYPLVWLPFIT----------NFRVQEQAFYHDRHS----FEAVLDLNA-APESVD 788 SKGLE+ +V+L NF EQ S AV D N P ++D Sbjct: 775 SKGLEFKIVFLLGADKDFKEMNKTLNFSTLEQINPTTGQSELQRIVAVNDANLLDPAAID 834 Query: 789 LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ 848 AE RL YVALTR+ A L + + G L Sbjct: 835 QHNERAEAEQHRLWYVALTRASHRVY---ALLQDQEYKSNTALTFWRGQAGNLF------ 885 Query: 849 DAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 E + T + QP + ++ + A QR + TS+S Sbjct: 886 ---------EHPASGNEVLLTEKPIRLQPAEHQEIIQLQALAFPEQRFYPRS--KTSFSA 934 Query: 909 LQQR-GHGIAQDLMPRLDVDAAGVASVVEEPTLT-----------PHQFPRGASPGTFLH 956 L Q A D + L + P L QFP G + GTFLH Sbjct: 935 LAQHLSRREAMDALAVLSEKVGSADDEINHPVLEDVELIQPLAWIKRQFPMGTTAGTFLH 994 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPVL-------------------TEWITAV 997 +FE +DF D + W+ +L W+ V Sbjct: 995 EIFEHIDFQDSGDWGLEIHRRFKNDSPLLWQELLGKYQNEFGQDDETQLVLWMQAWLADV 1054 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 L+ PL+ G L QL A E FYL +S+ ++A + + F L Sbjct: 1055 LETPLH-AGFQLKQLKADEHLAEFPFYLSLSDHVLA--IKRIQTLFQEYGIDLLDLNEAN 1111 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 L G IDLV+ RY++ DYKSN+LG D +Y A+ M Y LQ LY +A Sbjct: 1112 SARYLTGSIDLVYFDGQRYHIADYKSNFLGADQQSYNHDAIELNMSHASYWLQAGLYLVA 1171 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 LHRYL+ + DYD E H G YL+LRG++ + P QG+ + R + I +D + Sbjct: 1172 LHRYLKVNLLDYDIEEHLGQASYLYLRGMNGQ-PDQGVLSWRASPEFILRLDAILG 1226 >UniRef50_C6HV35 UvrD/REP helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV35_9BACT Length = 1166 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 350/1231 (28%), Positives = 523/1231 (42%), Gaps = 123/1231 (9%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS++ + LR +G LIEASAGTGKTF + LYL +L + VE++L Sbjct: 1 MSEIRPFIPVLR---RGVTLIEASAGTGKTFALTQLYLAAVLS---------GVPVEQIL 48 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELRGR+R+ + R L P E L D + + L A Sbjct: 49 VVTFTEAATDELRGRLRTLLSHARSHALGVA---PPPEILPLVADVRPEHLTLLSRALFD 105 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY-PLPREI 179 D A V TIH FC+R+L AFE F +L + + + + WRR Y PR + Sbjct: 106 FDRAPVATIHSFCRRVLREYAFEFDAPFSLELESSDRAFKKASVREVWRRLVYREDPRIV 165 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 Q+ KGP LL + G + ++ P A R A + AR + Sbjct: 166 WQISGLFPKGPDDLLSILPP--GGLSRPLRDNPGIPPPEAPRQAFLTARHRWISAAGTLG 223 Query: 240 VGELDALIES-SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP----ESLEKFSQRFL 294 GE + + S G + ++ K + ++A E + LP SL+ FL Sbjct: 224 EGEAERWLNSFPGSGKNGRVLADDRKKRETMAARIVELGTPHPLPPAGFSSLDDELVEFL 283 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETV---AREKRR-RGELG 350 + + + + + L ++ + R E+ A +KR +G Sbjct: 284 KTSSPGAAQPSALAALAGLREYLESARTLSSSLRERFRREVHREFSSVALKKREHQGVET 343 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-----HQP 405 FDDM+ R+ + L GE LA +R RFPVA +DEFQDTD Q+ IF RI+ Sbjct: 344 FDDMIGRVVAGLMGPRGEELARLLRKRFPVAFVDEFQDTDYAQFAIFGRIYELVSKDSDG 403 Query: 406 ETALLLIGDPKQAIYAFRGADIFTYMKAR-----SEVHAHYTLDTNWRSAPGMVNSVNKL 460 ET+L+L+GDPKQ+IY FRGAD+ Y++AR + +L N+RS V +VN L Sbjct: 404 ETSLVLVGDPKQSIYRFRGADLDAYVEAREAVLKKDAEGLCSLGVNYRSDALHVEAVNTL 463 Query: 461 FSQTDDAFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 FS+ D F+ E I + PV + K F+ E+ + L + G Sbjct: 464 FSRHPDPFISGERIVYHPV-TPKKTGPSGFLDPAESDEGLPPVLFAIDPEGEAFSNKDFV 522 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 A +I L + +P+R DI +LVR+ A + +AL L IP+V Sbjct: 523 DWAAREILRLLSGPAL--------REGKPLRPDDICLLVRTNSHATMMLEALESLGIPAV 574 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 + +V A ++ LL A+ P +R L++ + + A ++ ++ +D W+ Sbjct: 575 SYAGG-NVLRGEMAFDLEMLLLALKDPGDRRQMRLVLSSPLFEVPARELLSMEDDPELWN 633 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR---LTDILHISELLQE 696 V+ F W + G M LR L + +L G LTD+LH+ E+++ Sbjct: 634 ARVDPFFRTAADWFRLGAMGALRRLCLETRVFSRILGGGAGRSGRRRLTDLLHLIEIVES 693 Query: 697 AGTQLESEHALV-RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 + LV R+L + RL++ V+I+TIH++KGLE+PLV LP Sbjct: 694 LDRDRPTLALLVDRYLEARRESEKKGDDATAPRLDTLDGRVRILTIHRAKGLEFPLVILP 753 Query: 756 -FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 ++ + E +RLLYVALTR+V Sbjct: 754 LGLSGGDLSPAEEEEGEGEGEESETPEEM---------------MRLLYVALTRAVHRTV 798 Query: 815 LGVAPLVRRRGDKKGDTDVHQSALGRLLQK------GEPQDAAGLRTCIEALCDDDIAWQ 868 + + V QS+L RLL + + R I L + A Sbjct: 799 VMLP-----------CRYVSQSSLARLLSGGSSSGGKRGEAVSFFRKEIARLVAEYPALF 847 Query: 869 TAQTGDNQPWQ--VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDV 926 ++ + + A L + L R RV S+S L + G P L Sbjct: 848 GEALPPDRQREGLSPESLPALLPPRRLPRPLPAPLRVESFSSLARGGREGRTLFSPALRG 907 Query: 927 DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP--------------VDPNW 972 D E P P P G GT H FE L + P +D Sbjct: 908 DDDL---PWERPAGDPE--PGGPLFGTVFHRTFEILLSSAPPGEARDPFRELPEALDRAM 962 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNETG------VSLSQLSARNKQVEMEFYLP 1026 +LGG + L L A L + +++++ + VE EF LP Sbjct: 963 AESSSDLGGQAEAFREALFPLCARTLSAGLFPDPAVPGGWFAFARIASLPRSVEREFLLP 1022 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 L + PL F VRGM++GF+DL+FR + YLLDYK+N L Sbjct: 1023 AGGLSERDLRPYLFPE-------GAPLSFDPVRGMIRGFVDLLFRQGEKTYLLDYKTNRL 1075 Query: 1087 G--EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLR 1144 +++AY + ++ AM HRYD Q LY+LALHR L DYDY+ HFGG ++LF+R Sbjct: 1076 PGESEAAAYGPEGLSRAMAQHRYDFQGLLYSLALHRLLAFSRPDYDYDRHFGGALFLFVR 1135 Query: 1145 GVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 +G+ RP+ I + +F+G Sbjct: 1136 --GAGEGGEGVVHLRPDRAEIESLSALFSGE 1164 >UniRef50_Q7U7R4 Probable exodeoxyribonuclease V, beta subunit RecB n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U7R4_SYNPX Length = 1186 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 307/1239 (24%), Positives = 484/1239 (39%), Gaps = 134/1239 (10%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 DP R PL G RL+EASAGTGKTF +A L LRL+ + + LLVVTFT+ Sbjct: 3 FDPNRYPLDPGLRLLEASAGTGKTFALAHLTLRLI--------SEAAMPLPSLLVVTFTD 54 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPL------YERLLEEIDDKAQAAQWL---LLA 117 AA AELR RI + + + L ++ ++ W+ L+A Sbjct: 55 AAAAELRSRIGQRLQDALAGLEAVARGDALPKADSVLQQWWQQAPQGQSRRDWISRVLMA 114 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 Q+D A + TIHGFC R L A SG +QQL D + L + + W++ LP Sbjct: 115 LEQLDAADITTIHGFCSRSLRRQAINSGAAMQQQLETDATALVQEVVQELWQQQLLTLPL 174 Query: 178 EIAQVVFETWKGPQALLRDI-------NRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 Q + L + +LQ + P L R Sbjct: 175 PQLQGLVRAGLTADGLAAALLRLDADPQAWLQTDGDDFDPNQPLGAQLEVSLQLSWERFV 234 Query: 231 TVKQQ----WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAW--AEEETNSYQLPE 284 + ++ G ++ + ++ W A+ +T Sbjct: 235 QFWTRDGEGLEQCFRATAKQWKAMGFKPSPYSPKPTSDRFGQVDRWVAAQHDTPDLSTIR 294 Query: 285 SLEKFSQRFLED------RTKAGGETPR---HPLFEAIDQLLAEPLSIRDLVITRALAEI 335 + +K + K G + P L +AI L P+ + V AL Sbjct: 295 AQQKPLHDYFHPGVWCRTARKCGEQEPSLAAPELQQAIADLWDGPI---ERVWRYALQRG 351 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 + + R ++R G + F +L+ +D ++ ++ R+ M+DEFQDTDP Q+R Sbjct: 352 LQQLQRRRQRSGTVSFAGLLTAMDP---GDAEASWLEPLQQRYRAVMVDEFQDTDPVQWR 408 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 + +R + LLL+GDPKQAIY FRG D+ TY +AR V TL+ N+R+ P ++ Sbjct: 409 LLQRSFGGGSH-LLLLVGDPKQAIYRFRGGDLDTYRRARGLVSRIDTLEDNYRTTPPLMA 467 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 +N L + E+P + ++A V QP + + G + Sbjct: 468 GLNALMAPGLPESRL-EVPAVHARTARSAA----VLPEGQQPLQLLQFEQDLPAGKTAIE 522 Query: 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 + + A + L + + + +LV +AA +R AL Sbjct: 523 AAVPPAVAEVVMQLL-------------IEQPALSPDQLCILVSRHDQAADLRRALAERG 569 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 +P+ ++ D V ++ A M LL A+ P + LR A+ ++G +A + D Sbjct: 570 VPTRLVAQGD-VLDSDAALMMQHLLDALAAPADDRRLRLLAASPLVGWSADQLRCEAQDP 628 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ 695 D + + + G++ L L+ AE + R L D+ + L+Q Sbjct: 629 Q-LDALAQRLRQAADQLPRLGLLGCLSGLLD----AERTAGLSDEGRMLGDLQQAARLVQ 683 Query: 696 EAGTQLESEHALVRWL--SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 E + + A Q + P +++ + + V +VT+H+SKGLE+PLV Sbjct: 684 EEMHRQGLDLAAAALWLRRQRLHPPSPLPPAREPHSDLAESAVAVVTVHRSKGLEFPLVI 743 Query: 754 LPFITNF----RVQEQAFYHDRHSFEAVL----DLNAAPESVDLAEAERLAEDLRLLYVA 805 P++ R + D + + D + AE++AE RL YVA Sbjct: 744 CPYLWAGAKEARYVTGPLWRDGAAGGWRIALNRDWGLGWTVWQRSHAEQVAEAERLAYVA 803 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI 865 +TR+ L A QS L L +G+ L L Sbjct: 804 VTRARSQLLLLWARCA-----------PQQSVLQHWLFEGDADTLRDLPLSHRPL----- 847 Query: 866 AWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA---QDLMP 922 Q W+ T QR +W +SYS A Q Sbjct: 848 ----KPEVGQQRWRPPHRQETLAIGATPQR-IDRSWGRSSYSAWIAAPAAEALLEQGRDQ 902 Query: 923 RLDVDAAGVASVVEEPTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKLELG 980 + + A + E P P FPRGA+ G LH + E L F D + + ++L+ Sbjct: 903 DPEAEEVTAAGLEEWPDRGPLADFPRGAAAGDCLHRMLEQLPFQCSGDWGHVIEQELQRS 962 Query: 981 GFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLD- 1037 G W + + + VL PL + LS L+ + E+ F LP+ ++ Sbjct: 963 GLSLDWREAVEQGLQQVLDTPLGGPLAALPLSALTPDRRLHELSFDLPVRHARTDDLVEA 1022 Query: 1038 -TLIRQFDPLSAGCPPLEFMQV--RGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGED 1089 L + L +QV RG L G IDLVF + R+++ D+KSNW+GE Sbjct: 1023 FRLDPEARFGRDYIDQLSSLQVNSRGFLTGSIDLVFSDAADPLQARWWVADWKSNWIGER 1082 Query: 1090 ----------SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 Y Q AM M+ H Y LQ LY +ALHR+L+ R+ Y E H GG + Sbjct: 1083 GEPGSPSCCGPRHYDQVAMEEQMRHHHYPLQAHLYLVALHRHLQWRLPGYVPERHLGGYV 1142 Query: 1140 YLFLRGVDKEH------PQQGIYTTRPNAGLIALMDEMF 1172 Y+FLRG+ + G + +D M Sbjct: 1143 YVFLRGMPGQSIGSSGETGPGRIVEPAPLQRVLALDRML 1181 >UniRef50_Q6MFB6 Putative exodeoxyribonuclease V beta chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB6_PARUW Length = 1166 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 298/1217 (24%), Positives = 509/1217 (41%), Gaps = 125/1217 (10%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 +L L L+EASAGTGKTF+I + +RLL+ L + ++LVVTFT+AAT + Sbjct: 5 QLILHQHYLLEASAGTGKTFSIQNIVVRLLIENQLEQ---EALPLSKILVVTFTKAATRD 61 Query: 72 LRGRIRSNIHELRIACLR--------ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 L+ RIR NI E T + L + I+ +A + L A + D+ Sbjct: 62 LKLRIRLNIEYALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQ 121 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQ 181 A +FTIH FC RML A ES + F E+ DF+R AQ Sbjct: 122 AQIFTIHAFCARMLRQYAIESDIGFHASYGEETFPPSEILAVIQDFFRTEIRLENFSPAQ 181 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 + P + + R +Q + P T + Q + + +++ + + Sbjct: 182 LEIILKHDPDQ--KKLLRAIQSGYEFEELP-----TFQQIYQQFLEGMQNLQRTYSISSS 234 Query: 242 EL-DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE----- 295 L + E + R ++A + KIS + + E+ ++ LE Sbjct: 235 LLMEDFQEQAPFFRNYKGAKSKADTLIKISRFVALFDQTEWTVENFDQLICDGLEWVLAL 294 Query: 296 ----DRTKAGGETPRHPLFEAIDQLLAEPL----SIRDLVITRALAEIRETVAREKRRRG 347 + A +P F A+ E + ++I R ++ + +R Sbjct: 295 DPKLLKNPAASFRLNYPGFTALLHHTLERVVYLARDESILIARLAKACQKLLRNYQREEE 354 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 +L DD+L ++D A+ E+ I+ + A+IDEFQDTDP Q++IFRR++ Q +T Sbjct: 355 KLSPDDLLRKMDWAIGQEN---FLKQIQMIYQAAIIDEFQDTDPLQWQIFRRLFLPQDKT 411 Query: 408 ---ALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFS 462 L L+GDPKQ+IY+FR ADI+TY+ A + ++LD N+RS P +VN++N LFS Sbjct: 412 WKGYLYLVGDPKQSIYSFRQADIYTYLAAAQALGHEHCFSLDVNYRSQPALVNALNVLFS 471 Query: 463 QTDDAFMFR------EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 + + PV ++ NQ F + + A+ ++ +G + Q Sbjct: 472 PDHTPKFIPLPKTNFHLTYQPVFASTFNQTRLF---EDEKGAVHFFMGDGSNKKNSTIQD 528 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 +V I ++ ++ + + S +VLVR R +A ++ + ++ Sbjct: 529 LEQKVFFPFIAQEIRRLRKQKT----------LAYSQFAVLVRDRYQALRLAEYFDSYQL 578 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 P + S+ E+ ++ L++AV+ P+ TLR+ L S++G + + D Sbjct: 579 PYLNQRG-TSLAESPALNALIDLIKAVLHPQNIGTLRTLLGNSLIGWSHEKLH----DSS 633 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALM------SARNIAENLLATAGGERRLTDILHI 690 + ++ +Q+ ++G + + +I E LLA GG D+ I Sbjct: 634 NLESILSVIQSLKQVLIEQGFSIFYDRFLQSCWGKNKLSILEQLLAKEGGVDFYHDLQQI 693 Query: 691 SEL-LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 +E+ + + L+ +L Q ++ + + K ++I+T+H SKGLE+ Sbjct: 694 AEIVINHQYHEWNGPEGLIPFLDQFQKWDENEDPRVKRFQDPSKDGIKILTLHVSKGLEF 753 Query: 750 PLVW-LPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTR 808 +V+ L I +++ ++ ++ L + E E AE +R LYVA+TR Sbjct: 754 DIVFALGLIQRNSFKDELIPIEKEGKFVLIPLEESSEQRLHYCEEIDAEKMRQLYVAMTR 813 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA-----------AGLRTCI 857 + + + ++ + K G+ LGRL Q + + ++ Sbjct: 814 AKYQLYIPISLHIPSEQIKYGEASPLDLLLGRLGQTECSYETLYDRIRHFNGQSFIKFME 873 Query: 858 EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 E +D+ + + + + + V +L + ++S+S L + Sbjct: 874 EIGSQNDMTYSIHREIFLEKNKKDSVPFIDLEPPKSISILTTPLLMSSFSSLNRISSFSL 933 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKL 977 P T H P + G +H L E + F N E L Sbjct: 934 SQTPPHD----------FNNSIKTEHTLPASSETGILIHELLEKISFRDFKGINLAVETL 983 Query: 978 EL------GGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYLPISE 1029 L WE VL + VL L + L+ + EM F P Sbjct: 984 PLIRPWIQNEMYRPWENVLAALVYQVLNVDLGIYSSPFCLADIEPSKLVREMTFLFPYES 1043 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 L L ++ +G++KGFIDL+F H+G+YY++D+KSNWLG Sbjct: 1044 DLAIEGL-------------------VEGQGLIKGFIDLIFVHKGKYYIVDWKSNWLGSS 1084 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 + Y + AM H Y +Q ++YT AL RYL+ + +E FGG YLFLRG+ Sbjct: 1085 NECYDFFHLHQAMLDHNYFVQAKIYTEALKRYLKL-VETRAFEECFGGFFYLFLRGIQ-S 1142 Query: 1150 HPQQGIYTTRPNAGLIA 1166 + Q GIY LI Sbjct: 1143 NKQSGIYFCD-AQDLIK 1158 >UniRef50_D1R7X5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X5_9CHLA Length = 1167 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 285/1220 (23%), Positives = 512/1220 (41%), Gaps = 131/1220 (10%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + ++EASAGTGKTF+I + +RLLL P+T++E+LVVTFT AAT +L+ Sbjct: 11 IHHHHVLEASAGTGKTFSIENIIVRLLLENP-------PVTIQEILVVTFTRAATHDLKV 63 Query: 75 RIRSNIHELRIACLR---------ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 RIR NI + + + L + ++ + + L A + D+A Sbjct: 64 RIRENIEKALSFLQGLLLSPHYCYQEAPDYLKAIQGRDPEEIKEIKKRLEHALFEYDQAQ 123 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQ---ACADFWRRHCYPL---PREI 179 +FTIH FC R L + FE + L E ESL + + +F+R P P Sbjct: 124 IFTIHSFCLRTLKTHFFEGDLAL-HTLTEKESLSQAEILKVIRNFFRTELKPTIYGPTHF 182 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 ++ + + + L + + + P+ +P +++ ++A ++ + Sbjct: 183 QLLLKQYEQSIEKLETALVKVMTQGIPLAPSPSFEEQYALFKNAMLLLKDRGFSSH--SI 240 Query: 240 VGELDALIE--SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL---EKFSQRFL 294 + + LI DR+K ++ + ++ ++E S Q ES+ + F + L Sbjct: 241 LTDFHTLIPLYKGLTDRQKRIKAETLSKVQLFASLFDQEEWSLQDYESVIEDQLFLVKAL 300 Query: 295 EDRT---KAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEIRETVAREKRRRGE 348 + KA P + + LL EPL + + ++ + +++ + Sbjct: 301 DPSALTQKALSAPPPILILPNMLSLLKRHLEPLVNPLSTFAKLAYDCQKFLKHYQQQEEK 360 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-HHQPET 407 FDD+L + AL+ IR ++ A+IDEFQDTDP Q++IF ++ H Sbjct: 361 FRFDDLLHNMLQALQD---PTFTENIRNQYRAALIDEFQDTDPIQWKIFESLFLHEAYSG 417 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTD 465 L L+GDPKQ+IYAFR ADI+TY+ A + +L TN+RS P +V +N LF+Q + Sbjct: 418 YLYLVGDPKQSIYAFRQADIYTYLSAAQAIGEDYRVSLTTNYRSHPSLVQGLNVLFAQEN 477 Query: 466 DAFM------FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 + + + V++A K + ++ L + E + + + Sbjct: 478 APDFIHLPKWQKTLNYQHVQAADKTFGKTLT---DEMGSIHFILSDQEKPSLDSLEEKVY 534 Query: 520 -QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 A +I+ D +VLV R +A ++ D L IPS Sbjct: 535 FPFIAQEIQKLCHQN--------------TFEYQDFAVLVADRYQAQRMSDYFKTLNIPS 580 Query: 579 VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW 638 + N ++ ++ Q +L ++ + + L+ AL + G N DI L D + Sbjct: 581 LTQRNA-NLADSPAVQCWQEILHGILHARQSSALKIALGGKIFGWNHEDILRL-EDPFFY 638 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMS------ARNIAENLLATAGGERRLTDILHISE 692 + + E R+ G + ALM + + E +L G L ++ I+E Sbjct: 639 EKTLAEIYFLRKKLLSEGFIAFYDALMHHQLFQDSHTLIEKILHQESGADFLDELCQIAE 698 Query: 693 LLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 LL + + L+ +L + + ++ ++++ + VQI+++H SKGLE+ + Sbjct: 699 LLIQKQNETHCPPEGLIAFLDEFPILKLNDDERLYKQVDTHRKAVQILSLHSSKGLEFEI 758 Query: 752 VWLPFITNFR-VQEQAFYHDRHSFEAVLDLNAAPESVDLAE--AERLAEDLRLLYVALTR 808 V++ +T + +++L + + + E AE +R LYVA TR Sbjct: 759 VFVLGLTKKNQAPSPLIPQSQEGSQSILQMVYDLQDPAYIDYCQELDAEKMRQLYVAFTR 818 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSA---------LGRLLQKGEPQDAAGLRTCIEA 859 + + + ++ + + +L ++ L + I+A Sbjct: 819 AKYRLYVAALSPYEKQTAYGCASPIELFLAKLGQPSCTYAQLYERIHANSTESLISFIDA 878 Query: 860 LCDD-DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI-- 916 L + I + +++N + L + G+ ++S+S + ++ I Sbjct: 879 LDNSISITYTIESQVTPPCYEMNTTPSPILLPPPTIHISGEMLAISSFSQISKQMDQITP 938 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN----- 971 P DA+ T H P G G LH + E F + D Sbjct: 939 VWTESPPHHFDAS---------TKNLHTLPAGNITGLLLHEILEKFPFEKANDMQNPSEM 989 Query: 972 --WVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYLPI 1027 W+ ++ F+ W+ VL E + L+ PL + +L + E+EF P Sbjct: 990 RSWITPYVQNTEFQD-WDQVLAEMLFNTLKTPLPFKDATFALQDVQETKIFKEVEFLYPC 1048 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 + L L+ G LKG IDL+F H G++Y++D+KSNWLG Sbjct: 1049 EKGL---------------------LDLHIPEGFLKGVIDLMFEHAGKFYMIDWKSNWLG 1087 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 + AY+ ++ +M H Y LQ +Y +L RYL+ +D++ +FGG+ YLFLRG+D Sbjct: 1088 PNLQAYSTTSLQQSMHQHHYHLQSAIYVESLKRYLKL-FNQFDFKANFGGIYYLFLRGLD 1146 Query: 1148 KEHPQQGIYTTRPNAGLIAL 1167 E Q + P + Sbjct: 1147 IEEGQLFGFYALPEGKFLCT 1166 >UniRef50_C8NA25 UvrD/REP helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA25_9GAMM Length = 1287 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 300/1323 (22%), Positives = 483/1323 (36%), Gaps = 190/1323 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ E L +PL+G LIEASAGTGKT+T+ + LRLL+ G E++ Sbjct: 1 MNTTTEPTPALEIPLEGRALIEASAGTGKTWTLTGIILRLLIEGG--------YPPREII 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQ-------- 112 TFT A AE++ R+ +H LR E +L + D A Sbjct: 53 ATTFTRKAAAEMQQRVHKRLHALRENLKAIAARYLAEETVLNDDDGLATRLDDIIGGSGG 112 Query: 113 -------------------------WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGML 147 + + ++DE + TI CQR L A E+G Sbjct: 113 DLINRHLILNAVAKHGLDGLIAIFSRVESLQARLDELFIGTIDSLCQRWLAEFALETGND 172 Query: 148 FEQQLIEDESLLRYQACADFWRRHCYP----LPREIAQVVFE-TWKGPQALLRDINRYLQ 202 Q+ E+ L + D RR + P AQ++ + + A L Sbjct: 173 ERLQINENSPAL-EETIHDTLRRLLHENHQHDPETFAQMLADGAYHDSDAYLAAAREATS 231 Query: 203 GEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQ 262 I + + RH + ++ + + + A+I++ + Sbjct: 232 HRHAAIDSGDVSADYSRDRHQALTRQLRELDAAV---IADWQAMIDAPEFAAAVAKNAAW 288 Query: 263 AKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR-----HPLFEAIDQLL 317 K D + ++ + E + F + R + HP I LL Sbjct: 289 YKQRDALPQLLQQLHQELPFNDRTEALASGFGKPRISSKQTALTAAFTAHPFTLLIRDLL 348 Query: 318 AEPLSIRDLV-------ITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL-RSESGEV 369 A + ++ + I L +R+T + RGE F + +R++ AL + G Sbjct: 349 AARDARQNHLDHHKRQTIASLLETVRQTYPQALEARGETTFSEKTARINEALAHPQHGTN 408 Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW----HHQPETALLLIGDPKQAIYAFRGA 425 LA + R+PV ++DE QD + +Q + R + + LLL+GDPKQAIY FRG Sbjct: 409 LAHYLTRRYPVMLVDESQDLNDEQAALLERTYLREDGERKHGFLLLVGDPKQAIYGFRGG 468 Query: 426 DIFTY--MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 D+ Y +K R + LDTN RS+P ++ ++N+ + Q D+A + +I + ++A Sbjct: 469 DVANYNRLKTRFRPDEQHRLDTNRRSSPNLIAALNEHYLQDDNARLGTDITYHEAQAANP 528 Query: 484 NQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 Q + G W G + Q + AA + Sbjct: 529 AQTI-LAADGSPIARPMQWTHSGTN------QDSETDTIAALVARL-------------- 567 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 D + DI +L+RS +++ L I S +R SVF A+ LL A+ Sbjct: 568 TDGTGIAPRDIQILMRSNSSLETLQNKLHAQHIDSERSHDR-SVFTGAVARTFADLLAAL 626 Query: 604 MTPERENTLRSALATSMMGLNALDIETL----------NNDEHAWDVVVEEFDGYRQIWR 653 PE + L+ G + D++ L DE + E W+ Sbjct: 627 EQPEHRDRQNRLLSGLYYGYSQQDLDRLAAIEQGEIPARADELTLAELREALTQAHDAWQ 686 Query: 654 KRGVMPMLRALM--SARNIAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALVR 709 G++ L L+ NI + L + R L D+ HI +L E + Sbjct: 687 SWGLLAALNPLLTHEKHNIWQTLASCPAPDNLRHLLDLRHIQTILAEHAPKQR-PAQFGA 745 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP-FITNFRVQEQAFY 768 W + P ++ L ++ V ++TIHK+KGLE P+V L + Sbjct: 746 WWRAQLAAPPDADWAKAPPLP-GQNAVHLLTIHKAKGLEAPVVILATGSNHKGGGANPVP 804 Query: 769 HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV------------------ 810 R+ + ++ A + + + E RLLYV LTR+ Sbjct: 805 TWRYRDGDTIRISLAKPANTPIDQQENEEQRRLLYVGLTRAKNLLLVAHRECKPDKANPT 864 Query: 811 --WHCSLGVAPLVRRRGDKKGDTDVHQSALGR---------------------------- 840 L A R + +AL Sbjct: 865 PTEKLYLTYAQNPGRCPHAGETSAEALAALPYRAHPSHEPPANPPPPQSGGGEGGNGGSA 924 Query: 841 ------------------LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVND 882 + GE +AG + D A P Sbjct: 925 CDFTAYAHEKPLSLWERGWGEGGEKAASAGRISAQRVTQQPDDHQTAATEPPTNPPPQQS 984 Query: 883 VSTAELNAKTLQ------RLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE 936 + + R W+ +S+S L + + V A Sbjct: 985 GGGQGRGCENPRSTAPVWRTRFQGWQRSSFSALLRDAIEPTSPDLADYAVATPQNAPDAP 1044 Query: 937 EPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE------LGGFESQWEPVL 990 + +PRG +PG+ LH++ E + +P + R LE G E Sbjct: 1045 PDADIRYTYPRGTAPGSALHAVLERI---RPDNRRDWRRYLEHDNRQWQLGLEPAQLDAC 1101 Query: 991 TEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC 1050 W+ A+ L ++ +SL + E F L S+ +A + + F Sbjct: 1102 ENWLEAIQYCELPQSRISLGTSKQGAHRSEYGFTLG-SDARVALDIPAINAHFAAHGHPL 1160 Query: 1051 PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 + + L+G ID +++H+GRYY+LDYK+N LG + YT + + AAM H Y LQ Sbjct: 1161 HLSDKHRHIRYLRGEIDHLYQHDGRYYILDYKTNHLGNSPADYTPENIRAAMGDHHYWLQ 1220 Query: 1111 YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDE 1170 LY +ALHR L+ R+ADYD H GG+ YL+LRG+D HP G Y IA +D Sbjct: 1221 AALYQVALHRLLQTRLADYDPARHLGGIEYLYLRGIDPAHPANGKYGWNYPPEFIAGLDR 1280 Query: 1171 MFA 1173 + Sbjct: 1281 ILG 1283 >UniRef50_C0ZQ88 Exodeoxyribonuclease V beta chain n=6 Tax=Corynebacterineae RepID=C0ZQ88_RHOE4 Length = 1105 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 277/917 (30%), Positives = 418/917 (45%), Gaps = 79/917 (8%) Query: 318 AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRT 376 E + V+ A A + V R KR +G F+D+L+ L L E G V +R Sbjct: 198 EEETAPGQRVLFAAAARL--EVERRKRTKGIRDFNDLLTLLHGVLTDPEYGPVACRRVRE 255 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE 436 +F V +IDEFQDTDP Q+ I R +H T L+L+GDPKQAIYAFRGA++ +Y+ A + Sbjct: 256 KFKVVLIDEFQDTDPLQWDILRLAFHG--HTTLVLVGDPKQAIYAFRGAEVLSYLDAVDQ 313 Query: 437 VHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ 496 AH L TNWRS PG++ ++ L+ A I PV+++ K L + Sbjct: 314 ADAHQELTTNWRSDPGLLAALEHLYGGA--ALGNEGIVAHPVEASHKKSRLSGPVPMRVR 371 Query: 497 PAMKMWLMEGESCG---VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 + G VG +S +A AA + L + +A L D RPV D Sbjct: 372 HLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVGLLGS----DARLAVDGDPRPVEPGD 427 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 ++VLVR+ ++ A +RDAL + +PSV L+ SVF T A + LWLLQA+ P R + +R Sbjct: 428 VAVLVRTHKQVAMIRDALDAVGVPSV-LTGGSSVFATPSATQWLWLLQAIEQPHRSDRVR 486 Query: 614 SALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 + + G A +++ + ++ + + Y ++ + G + + + N+ + Sbjct: 487 LTALSPIFGRTAEELDV--DGDNVVAELAGQLRSYSGLFARVGFAAVFERISAETNLEKR 544 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDS-NASSQQMRLES 731 +LA GER TD+ H+++LL T+ ALVRWLS I +P S +A+ + RL+S Sbjct: 545 VLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSRRLDS 604 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPF----ITNFRVQEQAFYHDRHSFEAVLDLNAAPESV 787 D VQI T+H +KGLE+P+V++PF + F Q + + P Sbjct: 605 DAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPDGRRILDVGGQEGPGHN 664 Query: 788 DLAE---AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK 844 AE E+LRLLYVALTR+ L AP + +H+ LGR Sbjct: 665 ARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSY-----GTSRSPLHRLMLGRTPGI 719 Query: 845 GEP---------QDAAGLRTCIEALCDDDIAWQTAQTGDNQP--WQVNDVSTAELNAKTL 893 EP A A D I+ + P W + EL A Sbjct: 720 AEPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVQWSGAAANVTELAAARF 779 Query: 894 QRLPGDNWRVTSYSGLQQRGHGIAQ-----------DLMPRLDVDAAGVASVVEEPTLTP 942 R WR TSYS L H D P VD V E +P Sbjct: 780 DRDLDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDEPEDSVDFGTVTPSPLEALPSP 839 Query: 943 HQ-FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWE---PVLTEWITAVL 998 P GA+ GT +H + E +D + + E L + + V+ Sbjct: 840 MNGLPAGAAFGTLVHEVLEVVDTAASDLRAELGIRCAEAVSVRAAEVDSEALADALLLVM 899 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD-------TLIRQFDPL----- 1046 Q PL +L+ ++ +++ E++F LP++ + L+R+ P Sbjct: 900 QTPLGFG--TLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILA 957 Query: 1047 --SAGCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGE---DSSAYTQQAMAA 1100 + +E +RG L G ID V R G + ++DYK+N LG ++ YT++ MA Sbjct: 958 SYADHLDRVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMAT 1017 Query: 1101 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK--EHPQQGIYTT 1158 M Y LQ LY++ALHRYLR R+ DYD H GG Y F+RG+ P+ G++ Sbjct: 1018 EMMRSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEW 1077 Query: 1159 RPNAGLIALMDEMFAGM 1175 +P A L + ++ AG+ Sbjct: 1078 KPPAQLTVELSDLLAGL 1094 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 24/242 (9%) Query: 14 PL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 PL G ++EASAGTGKT+ I L R + + ++L+VTF+ AAT EL Sbjct: 8 PLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLA--------DISQVLLVTFSRAATQEL 59 Query: 73 RGRIRSNIHELRIA-----CLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 R R R + A R + D+ + + ++ + LL A + D + Sbjct: 60 RERARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTIT 119 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 T H FCQRML+ + +E L + +D + L R + Sbjct: 120 TTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLY------LSRYSRTDSSPPF 173 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETL--ASRHAQIVARIDTVKQQWRDAVGELDA 245 AL I R G+ I P ++ET AR++ +++ + + + Sbjct: 174 STKDAL--AIARIAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFND 231 Query: 246 LI 247 L+ Sbjct: 232 LL 233 >UniRef50_A3ETY5 Putative exodeoxyribonuclease V, beta subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY5_9BACT Length = 1101 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 304/1193 (25%), Positives = 495/1193 (41%), Gaps = 124/1193 (10%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ +ET L LPL+G IEASAGTGKT T+A LYL ++L ++ E +L Sbjct: 1 MTGFSETPLYLGLPLEGIHAIEASAGTGKTTTLALLYLSVILS---------GVSPENIL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTD-NPLYERLLEEIDDKAQAAQ-WLLLAE 118 VVTFT AA ++R RI+ + ++R + P LE ++ L A Sbjct: 52 VVTFTRAAAQDVRERIQKLLEDVRQWRSGSKAEILPDLRAYLETLETDPLLLDMRLREAL 111 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 D A + TIH FCQ +L+ +F G L+ ++ + Y++ WR Y Sbjct: 112 VVFDRAPIQTIHSFCQSLLSQMSFLLGAPANLVLVPEDQPVLYESSVRLWRSLFYGRDSR 171 Query: 179 IAQVVFETWK-GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 +A+ W+ GP +R A ET +++ + +Q +R Sbjct: 172 LAEFFLSVWEDGPGGWVRMFR--------TASARRGSPETCFRPVEEVMEQYRARRQTFR 223 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 +A+G + + + + + ++P + L + Sbjct: 224 EALGIV-----------------FPERSREVLPHRVRDLLGDREIPALGLSYDDADLGET 266 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 G + R L + IR + RE+ RG +DD++ R Sbjct: 267 FPPGEDALRELLGRTLQSARDLQEVIR-SSFRDLAGTWKHRELREREVRGIATYDDLILR 325 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-QPETALLLIGDPK 416 + +L ES +A +R RFPVA +DE QDT Q IF RI+ +P +AL IGDPK Sbjct: 326 VADSLERES---VAQRLRDRFPVAFVDESQDTSRDQSGIFARIYRDPRPGSALFWIGDPK 382 Query: 417 QAIYAFRGADIFTYMKARSEVHAH--------YTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 Q+IY FRGAD+ Y++ + + L N+RS+PG++++VN+LF + F Sbjct: 383 QSIYRFRGADVGAYLEFSRQAKSSPASPASPPLRLSVNYRSSPGVLHAVNRLFGRHPSPF 442 Query: 469 MFREIPFIPVK--SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 + + + P S K + + F G + G D A+V A ++ Sbjct: 443 LLEGVSYHPSSPVSGRKPELVDPAFSGSC-------FLVYPGRGPKDKLDDFARVTADEV 495 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 L G+ LL + RP+ ASDI+VLV + +V IP S S Sbjct: 496 DRLLS----GKILLND----RPLAASDIAVLVPKNDDGERVAGFFRERGIPYNSASPG-S 546 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 VF T EA E+ +L A+++P R L AL T + G +A I+ L D V E F Sbjct: 547 VFHTREADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRIDGLVRDPEQARPVQEVFL 606 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHA 706 ++WR G+ R L + LL+ +R+ + + +++A Q + Sbjct: 607 EASRLWRTHGIRAAFRELFFRMGVWTRLLSAGRTRQRID---RLVDRIEKAAGQFPTPPD 663 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF--ITNFRVQE 764 R+ S+ L P+ + + + E V I+T+HKSKGLE+P+V++PF R +E Sbjct: 664 QHRFFSRARLSPEGESHEETVGGEPGTG-VHILTVHKSKGLEFPVVFVPFGIPEKTRKEE 722 Query: 765 QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 +AF + E +E LRLLYVALTR+ L +++ Sbjct: 723 EAFREED------------------GEDSDQSESLRLLYVALTRARERVYLFCPLNRKKQ 764 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD--DDIAWQTAQTGDNQPWQVND 882 + + GR + + +R +E D +++ + + Sbjct: 765 SALDHLLETDRHLEGRREKTVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKTP 824 Query: 883 VST----AELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA----QDLMPRLDVDAAGVASV 934 E+ ++L RVTS++ + RG D + + ++ Sbjct: 825 KEQGKVEDEIVVRSLAHPLPVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDLSGNL 884 Query: 935 VEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWI 994 VE P F G F+H + E+ W+ + + EW+ Sbjct: 885 VERPGAAGRAF------GVFVHGVLEEAG-------KWIVRYKKAKKISPSRAD-VREWL 930 Query: 995 TAVLQA-PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 + + P +E G + +Q +PIS +A LD R +P P Sbjct: 931 RSSFPSRPSDEVGGWTASALELAEQGLCTPLIPISGLPLADLLDDRSRFEEPFLLRLPDE 990 Query: 1054 E---FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 E +V L+G ID+V YL+DYK+N+L + + Y +++ + HRYDLQ Sbjct: 991 ENAGEREVASHLRGVIDVVVWSGKTVYLIDYKTNFLTAEGNPYAPESLERVLSDHRYDLQ 1050 Query: 1111 YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 ++Y+ A R+L E FGG ++LFLRG+ +E + T P G Sbjct: 1051 ARIYSGACRRHLALT----GNEGEFGGFLFLFLRGMGRERGSGTVLWTPPKEG 1099 >UniRef50_A6W6P2 Exodeoxyribonuclease V, beta subunit n=2 Tax=Actinomycetales RepID=A6W6P2_KINRD Length = 1125 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 299/1090 (27%), Positives = 445/1090 (40%), Gaps = 114/1090 (10%) Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 E+ V E + L D + V+ DD A A++ + Sbjct: 62 AATAELRDRVRERLVATRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFD 121 Query: 234 QQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL-----PESLEK 288 + E + +S + S A ++ + EE + L P + Sbjct: 122 TATVATIHEFCRQVLTSLGTAADVDPS--ATLVEDVDDLVEEVCDDLYLRFAVRPGAGVP 179 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 R R E D L P ++R R +R V KR R Sbjct: 180 PFDRPTALRIARAAVDRADARIEPPDTLPGSPENLR----VRFALGVRREVEARKRSRRV 235 Query: 349 LGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 LGFDD+L+RL AL +G V +R R+ V ++DEFQDTD Q+ + R +H Q Sbjct: 236 LGFDDLLTRLRDALTDPVAGPVACERLRRRYSVVLVDEFQDTDAVQWDVLRTAFHGQ--G 293 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 L+LIGDPKQAIYAFRGAD+ +Y+ A TL TN RS P ++ L A Sbjct: 294 PLVLIGDPKQAIYAFRGADVRSYLDAAGVAGTTATLSTNHRSDPLVLAGTAALLRGA--A 351 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES--------CGVGDYQSTMA 519 + I PV +A AL +++ ++E + VG+ ++ +A Sbjct: 352 LGEQRIVVRPVDAAHAAAALVDGSGAPDPAPVRVRVLERDGLPTTGRGLPPVGEARAVVA 411 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 + AAQ+ L+ G R + R + A D++VLVR+ +AA V++ L +P V Sbjct: 412 RDTAAQVVAVLREGLR---VRPRDGGERDLEAGDVAVLVRTGAQAALVQEELRRRGVPCV 468 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 LS SVF T AQE + LL+AV P R +R +S +G +A +++ + A D Sbjct: 469 -LSRGPSVFATPAAQEWISLLEAVEQPHRAPRVRRVALSSFVGRSAAELDA--AGDRATD 525 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 + + + + +RGV + A + LL GGERRLTD+ HI+E+L Sbjct: 526 ELSVQLREWGAVLTERGVAGAFAVVGEAHRLPGRLLGVEGGERRLTDLRHIAEVLHRESA 585 Query: 700 QLESE--HALVRWLSQHILEPDSNAS-SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 +L+ WL + E +A + RL++D+ VQI T+H SKGLE+ +V +PF Sbjct: 586 LNPGGGVSSLLSWLRARVEEAAGDADRERSRRLDTDRAAVQIATVHTSKGLEFEVVCVPF 645 Query: 757 ITNFRVQEQ-----AFYHDRHSFEAVLDLNAAPESVDLA----EAERLAEDLRLLYVALT 807 + H A+ A + E L E+LRLLYVA+T Sbjct: 646 GWDAPGGGGSKDRLPVAHAPDGPRALHVGGPGAPGYAAACRAADTEDLGEELRLLYVAVT 705 Query: 808 RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ-----------DAAGLRTC 856 R+V + AP + + AL RLL +P + R Sbjct: 706 RAVSRLLVWWAP----------SQNTEEGALHRLLLAEDPLAVPESLPVPGDEVLSSRLA 755 Query: 857 IEALCDDDIAWQTAQTGDNQ-PWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH- 914 +A +T + A L + WR TSYSGL + H Sbjct: 756 SRFPAGGPVAVETVPLRTPEDRLPAVAAPAAHLAVARFRGAVDLGWRRTSYSGLTRGVHD 815 Query: 915 ----GIAQDLMPRLDVDAAGVASV-------------VEEPTLTPHQFPRGASPGTFLHS 957 G A P +DV V P G GT +H+ Sbjct: 816 GPGAGHAVLAGPEVDVTDDEVDLDAAGATAADDDPRGWRATVSPMADLPAGTGFGTLVHA 875 Query: 958 LFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--TGVSLSQLSAR 1015 + E D P D L F+ Q L + VL+ L G +L Sbjct: 876 VLEGFDPAVP-DRTAHLAALAREQFDPQPAEDLALALGPVLRTGLGPLAGGAALEGFPVA 934 Query: 1016 NKQVEMEFYLPISE-----------PLIASQLDTLIRQFDPLSAGCPPLE-----FMQVR 1059 ++ E++F +P++ +A L + DP+ LE +R Sbjct: 935 DRLAELDFEMPLAGGDAAGPAGPRVGDVAGLLRRHLPPGDPVHRYADALEDPVLGEEGLR 994 Query: 1060 GMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSS-----AYTQQAMAAAMQAHRYDLQYQL 1113 G L G ID V R EG + ++DYK+N LG Y ++A+ A+ A Y LQ L Sbjct: 995 GYLTGSIDAVLRRREGGFLVVDYKTNRLGAPGEILTAWHYRREALDEAVLAAHYPLQALL 1054 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV-------DKEHPQQGIYTTRPNAGLIA 1166 Y +ALHR+LR R YD H GGV+YLFLRG+ ++ G+++ RP AGL+ Sbjct: 1055 YCVALHRFLRWRQPGYDPAVHLGGVLYLFLRGMCGPEVPAGEDGVPPGVWSWRPPAGLVV 1114 Query: 1167 LMDEMFAGMT 1176 + E+ AG T Sbjct: 1115 DLSELLAGRT 1124 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 14/175 (8%) Query: 2 SDVAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 + D L PL ++EASAGTGKT+TIA L R + TV++LL Sbjct: 5 TPAPAVFD-LAGPLPVATTVLEASAGTGKTYTIAGLVTRYVAEGVA--------TVDQLL 55 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACL----RETTDNPLYERLLEEIDDKAQAAQWLLL 116 VVTF AATAELR R+R + R A + + + L + A+ L Sbjct: 56 VVTFGRAATAELRDRVRERLVATRDALADPASARRSRDAVLAHLAADDARAAEHRARLSE 115 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 A D A V TIH FC+++L + + L+ED L + C D + R Sbjct: 116 ALAGFDTATVATIHEFCRQVLTSLGTAADVDPSATLVEDVDDLVEEVCDDLYLRF 170 >UniRef50_D0L8X3 Exodeoxyribonuclease V n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8X3_GORB4 Length = 1134 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 281/1105 (25%), Positives = 435/1105 (39%), Gaps = 112/1105 (10%) Query: 169 RRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR 228 R +P +V + L + + G V+ P ++ H + A Sbjct: 42 RYLAEGVPISGMLLVTFSRAATAELRERMRERVHGLVGVLADPASAAQSADQLHRLLAAG 101 Query: 229 IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 + R + + ++S I + + + E Y++ E +++ Sbjct: 102 TAEDVARRRAHLVRALSDFDASTIA----TTHTFCNRMLEALGFLGEREMVYRIVEEVDE 157 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA--EIRET-------- 338 + D G T P F + ++R + A E+++ Sbjct: 158 LTDEVALDLYLRGFSTSEAPDFSLAEAQRIARDAVRQAAVALAPEAAELQDAGEPGRVAA 217 Query: 339 ------------VAREKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDE 385 V KR +DD+ + L + GE IR+ F VA++DE Sbjct: 218 RRVRFAARVRQIVEARKRTSRLRTYDDLQTILHRIITDPDVGEAACRRIRSTFAVALVDE 277 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDT 445 FQDTDP Q+ I RR +H L+L+GDPKQ+IY FRGA++ +Y+ A LDT Sbjct: 278 FQDTDPLQWDIVRRCFHG--HRRLVLVGDPKQSIYGFRGAEVLSYLSAVRSADTLRALDT 335 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N RS +V S+ L+ I PV +A L + + M+ Sbjct: 336 NRRSDGDLVASLWTLYGGAT--LGHPGIVVHPVGAAHAGSRLDGAVPMQVRAFMRTDFNR 393 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 S GV A+ + D + + ++ RPV DI+VLVR + Sbjct: 394 LNSLGVPSAPDARAR-ITTDVADHISSALSAGMTIVVDGARRPVEPGDIAVLVRQNKTIE 452 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 ++ AL + +V S +VFET AQ LW+L+AV P R + +R A T ++G Sbjct: 453 PLQTALAARGVNAVIGSGV-NVFETSAAQHWLWVLRAVEQPSRPDRVRLAALTPLLGWTP 511 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 + E + F Q++ + G M + LM+ N+A +LA GGER LT Sbjct: 512 ERLAV--QAETGTAELGAGFAALGQVFGECGFAAMAQRLMAQENVAARVLAMRGGERLLT 569 Query: 686 DILHISELLQ-EAGTQLESEHALVRWLSQHILEPDSNA--SSQQMRLESDKHLVQIVTIH 742 D+L IS L + E LV WL+ I + Q RLE D VQI+T+H Sbjct: 570 DLLQISALCNKQVVESGEGISGLVEWLADRIADSSRRQRHEDQSRRLERDTEAVQIMTVH 629 Query: 743 KSKGLEYPLVWLPFITNFRVQEQ---AFYHDRHSFEAVLDLNAAP----ESVDLAEAERL 795 SKGL++P+V++PF + ++ +HD + E Sbjct: 630 ASKGLQFPIVYVPFGWDGTWIDEEGDLTFHDDEGTRLLDVAGPGAPGRGTRRARYAEEVA 689 Query: 796 AEDLRLLYVALTRSVWHCSLGVAP------------LVRRRGDKKGDTDVHQSALGRLLQ 843 EDLRLLYVALTR+ AP + R+ + A + + Sbjct: 690 GEDLRLLYVALTRAQSQVVTWWAPTANTPTGPLHRLIFGRQRALAERSGTDPQAPWTVAK 749 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQT-----AQTGDNQPWQVNDVSTAELNAKTLQRLPG 898 + D T + L + D + T P + L+A R Sbjct: 750 SVDVPDDVECVTVLRQLAERDSRIEVSPAGRLPTPPAGPAGDDPADLPVLSAAAFDRRID 809 Query: 899 DNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG-VASVVEEPTLTPHQFPR---------- 947 WR TSYS + + + D A ++ +EP P Sbjct: 810 QQWRRTSYSAIIAGAAHGPSAVETGSERDGARLDTALDDEPIEAPEPLAGNVIEDESGER 869 Query: 948 ------------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELG-GFESQWEPV--LTE 992 GA GT +H + E +D + P + V + + G V LT+ Sbjct: 870 TGTPSPMSGLSFGAGFGTLVHEVLEYVDTSAPDIRSHVAQLVARAAGVRGGTVDVNVLTD 929 Query: 993 WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISE-------------PLIASQLDTL 1039 + VL PL L ++ R++ E++F LP+ + IA +D Sbjct: 930 ALVGVLTTPLGFGD--LWSIAPRDRLAELDFELPLGDDAASDETETGATVAEIADLMDRH 987 Query: 1040 IRQFDPLSAGCPPLEFMQ---VRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDS---SA 1092 + DPL L + +RG L G ID V R +GRY ++DYK+N L Sbjct: 988 LGADDPLRPYAQVLRGVPAARLRGFLTGSIDSVLRVPDGRYVVVDYKTNRLRPGELMVED 1047 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK--EH 1150 + AMA M Y LQ LY++ALHRYLR RIA Y EHH GGV Y F+RG+ Sbjct: 1048 FHSGAMATEMIHAHYPLQALLYSVALHRYLRWRIAGYTPEHHLGGVQYHFVRGMAGPSTP 1107 Query: 1151 PQQGIYTTRPNAGLIALMDEMFAGM 1175 P G++ +P + L+ + ++ AG+ Sbjct: 1108 PGCGVFEWKPPSELVTAISDLLAGV 1132 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 81/217 (37%), Gaps = 14/217 (6%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + T D ++EASAGTGKT+ I +L R L + + +L+ Sbjct: 5 TRAPHTFDIAEDLPAQTTVLEASAGTGKTYAIVSLAARYLAE---------GVPISGMLL 55 Query: 62 VTFTEAATAELRGRIRSNIHEL---RIACLRETTDNPLYERLLEE--IDDKAQAAQWLLL 116 VTF+ AATAELR R+R +H L RLL +D A+ L+ Sbjct: 56 VTFSRAATAELRERMRERVHGLVGVLADPASAAQSADQLHRLLAAGTAEDVARRRAHLVR 115 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A D + + T H FC RML F +++E+ L + D + R Sbjct: 116 ALSDFDASTIATTHTFCNRMLEALGFLGEREMVYRIVEEVDELTDEVALDLYLRGFSTSE 175 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPP 213 + A+ + A + A P Sbjct: 176 APDFSLAEAQRIARDAVRQAAVALAPEAAELQDAGEP 212 >UniRef50_A5EXI1 Exonuclease V, beta subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXI1_DICNV Length = 1198 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 290/1241 (23%), Positives = 511/1241 (41%), Gaps = 122/1241 (9%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 + + PL G+ LIEASAGTGKT+T+ + LRLLL S E ++ TFT A Sbjct: 4 EIMDFPLSGKVLIEASAGTGKTYTLTGILLRLLLSEVPSKGI-FARAPEAIIATTFTRKA 62 Query: 69 TAELRGRIRSNIHEL---------------------------------------RIACLR 89 AE+R R++ ++ + + Sbjct: 63 AAEMRMRLKMRLNAMHHLLQALAQTLLQSDEEETDYYAHIAHLLTLWAENAQTPAEKAAQ 122 Query: 90 ETTDNPLYERLLEE--IDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGML 147 E+ ++ L ++E ID Q +D + T+ CQ L + + E+G Sbjct: 123 ESLNHALILEAVQENGIDGFTDLCQRCNSVIATLDRLFIGTLDSLCQHWLRMFSLETGTA 182 Query: 148 FEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYL-QGEAP 206 +L+ D + R+ + + + P + I+ L +A Sbjct: 183 QSTKLV-DGHEEITEIVHQQLRQFYWQYSDYHEYL--SSINPPAHYAKAISGQLNYADAA 239 Query: 207 VIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWI 266 V + P DE A+ Q + + AL S I + + W Sbjct: 240 VDEIDVPSDENFAALLEQTK----------NTKMDDFLALFASQKIVSKLTDPELL--WQ 287 Query: 267 DKISAWAEEETN------SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP 320 ++ +E N + ++ E F + ++ + + P+F A+ Sbjct: 288 ALLTQTPIDEENIKIIETWHNAVKTGEGFLKAAKSEQIETICQHDCAPIFLAVTSAFLAQ 347 Query: 321 LSIRDLVITRALAE----IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRT 376 ++ + A E +R + + +G+ F+ +RL+ AL ESG LA I Sbjct: 348 KNLNKTLAACAAKETLLAVRSQLPAQLEMQGKATFNHYTARLNQALAGESGAALARYIAH 407 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIW---HHQPETALLLIGDPKQAIYAFRGADIFTYMKA 433 R+PV ++DE QD + QQ + RI+ LLL+GDPKQAIY FRG D+ Y++ Sbjct: 408 RYPVLLVDESQDLNAQQAQFIERIYLKNLEADRHFLLLVGDPKQAIYRFRGGDVANYLRL 467 Query: 434 RSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVF 491 ++ Y+L N+RS+P ++ ++NKL+ D A I + P+ +A +AL+ V Sbjct: 468 KAAFSQQECYSLTKNYRSSPALIAALNKLYQ--DRAAFGGGIDYEPMTAAVTQRALQSVD 525 Query: 492 KGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM--NGDDARPV 549 P ++ +E ++ I +Q ++ + + RP+ Sbjct: 526 GAAITPP--LYWLETKNDNEHLA-----------IVHLIQNLTAKNSIYAYHDKQNRRPL 572 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 R SDI VL SR + +++ L I +V S S+F + A + L A++ P+++ Sbjct: 573 RYSDILVLGTSRSKLEELQILLQQHGI-NVDYSAEKSIFASDLAAAIATFLAAMLAPQQQ 631 Query: 610 NTLRSALATSMMGLNALDIETLNNDEHAWD--VVVEEFDGYRQIWRKRGVMPMLRALMSA 667 L + L+ ++ L+ A + + Q+W+++ ++ L+ ++ Sbjct: 632 EQLNRLFISPFFRLSLAELTALSQPSSALNYAQLSAVLTEAEQLWQQKKLLSALQLFLTT 691 Query: 668 ----RNIAENL--LATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 I E L L ER L D+ + +++ + G +L++ +RW + + Sbjct: 692 DFAGLTIWERLARLPYPENERALLDLRQLQQIIADRG-RLDTLDQFLRWWKFMLTTLPTA 750 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 ++ M L S + ++++TIH +KGL+ P+V + + R + FY A D Sbjct: 751 DWAKMMPLPS-QDALRLMTIHSAKGLQAPVVIISGLGKHRKHDALFY---PYHTATGDFR 806 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 A E V+ + E E RLLYV LTR+ + + L ++ GD D L + Sbjct: 807 IATEKVEENQQEDDDEKARLLYVGLTRAEDLLFVALQSLRKKDGDFFADAHAGMKRLDPV 866 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 K + L ++ +++A + Q ++T E T R W Sbjct: 867 RFKNTAVNHGFL-----SVNPEELAQRLTQPQYTLSSASETIATIE-QDPTYPRQRFYGW 920 Query: 902 RVTSYSGLQQRGHGIAQDLM-PRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 +S++ L + D+ P + A ++ + P +F RG G+FLH L + Sbjct: 921 SKSSFTALTRYVDENTVDISLPDYAEEEAESETIADPDLALPARFARGTKAGSFLHQLLK 980 Query: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTE------WITAVLQAPLNETGVSLSQLSA 1014 DL T E+L + L + W A++ +PL + +L+ LS Sbjct: 981 DLPETPAQFWRGHIERLAKQYRLLERTAALDDYAQYEAWFQAIMASPL-VSQTTLAALSP 1039 Query: 1015 RNKQVEMEFYLPIS-EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 K EM+F L ++ + S ++ L +++ ++ L G ID ++ + Sbjct: 1040 AQKVDEMKFILHVAGKSFNISAVNRLFERWEKPLTLHQKQASIR---FLCGEIDFCYQQD 1096 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 +YY +DYKSN+LG Y AM AM H Y LQ +Y ALHR+L+ R+ +Y Sbjct: 1097 DKYYFIDYKSNYLGTAPQEYHVSAMKKAMNEHHYWLQALIYQTALHRFLQTRLKNYQPAL 1156 Query: 1134 HFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 H G Y F+RGVD E G + L+ D + +G Sbjct: 1157 HLGYPEYFFIRGVDAEEQTLGHFPVDLPLDLVLEFDAILSG 1197 >UniRef50_Q6A850 Exodeoxyribonuclease V beta chain n=3 Tax=Propionibacterium acnes RepID=Q6A850_PROAC Length = 1078 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 244/888 (27%), Positives = 385/888 (43%), Gaps = 66/888 (7%) Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 +RE V R + R FDD++ L ALR G + A + RF + M+DEFQDTDP Q Sbjct: 208 VREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLARATLAHRFGLVMVDEFQDTDPLQ 267 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGM 453 + I RR +H + L LIGDPKQ+IYAFRGADI Y A LD N+R+ + Sbjct: 268 WEILRRAFHG--HSNLWLIGDPKQSIYAFRGADIHAYQDAAQSASHVLHLDVNYRTDKPI 325 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG-----ETQPAMKMWLMEGES 508 V +VN LFS +A + +I V + + ++ +QP L Sbjct: 326 VEAVNTLFS---NAQLGHDISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQA--P 380 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 G +T Q + + + G ++ +GD RP+R +DI++LVR+R+ A++ Sbjct: 381 AGAQLNTATSDQFVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRRGAELA 440 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL+ P+V+ S V+ + A++++ LL+A+ E + ++G D+ Sbjct: 441 TALSQAHQPAVF-SGASPVWSSQAAEDLITLLEALEN-TDERLRTRLCLSDLIGATPADL 498 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 +D + + + W GV + A + + L++ AGGER +TD+ Sbjct: 499 AA--SDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSMAGGERYVTDLR 556 Query: 689 HISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 +++ A + + A W+ + + RL+SD+ V I+TIH++KGL Sbjct: 557 QVAQKAHIAACEGRLTATATAAWIREQ---QQLAGDDEPRRLDSDQQAVIIMTIHEAKGL 613 Query: 748 EYPLVWLPFITNFRVQEQAF-----YHDRHSFEAVLDLNAAPESVDLAEAERLA--EDLR 800 +P+V LP ITN +Q+ +HD + S+ + E E+LR Sbjct: 614 GFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIAIESHEEDERGENLR 673 Query: 801 LLYVALTRSVWHCSLGVAPL-VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA 859 LLYVALTR+ L +P +R R G L D L Sbjct: 674 LLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPW---- 729 Query: 860 LCDDDIAWQTAQTGDNQPWQ-VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ 918 L IA A + V+ A + +TL R + TSYSGL H Sbjct: 730 LNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVS 789 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV----R 974 + M +D V++ P G S GT +H++ E +D + V R Sbjct: 790 EPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITR 849 Query: 975 EKLELGGFESQWEPVLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLI 1032 L + L + VL + L G++L+ S ++ EM F L +++ Sbjct: 850 RALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGR 909 Query: 1033 ASQL---------DTLIRQFDPLSAGCPPLEFMQ-----VRGMLKGFIDLVFRH-EGRYY 1077 ++ + +L+ DP+S L + +RG L G ID V R +GR+ Sbjct: 910 STTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHL 969 Query: 1078 LLDYKSNWLGE----DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 ++DYK+N + Y M M + Y LQ LY+ ALHR+L + YD Sbjct: 970 VVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLASSLPGYDPAT 1029 Query: 1134 HFGGVIYLFLRGV------DKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 H G + YLF+RG+ D + P G++T P LI + E G+ Sbjct: 1030 HLGPIGYLFVRGMADRPVPDGDMPD-GVFTWHPRPELIEAISERLGGL 1076 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 96/274 (35%), Gaps = 18/274 (6%) Query: 11 LRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69 + PL QG L+ ASAGTGKT+TI+A+ + + + ++ LL+VTF +A Sbjct: 9 ITRPLPQGTVLLAASAGTGKTWTISAVCAKAI--------ATGLVHMKNLLLVTFNRSAA 60 Query: 70 AELRGRIRSNIHELRIACL-RETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFT 128 ELRGR+ + R+ +P L+ + A D A + T Sbjct: 61 RELRGRVYERLVNTRLLLAGAREPSDPCDWSLIRCGRA---GFTRVESALDNFDRAVITT 117 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWK 188 H F RML S L+ D + L + D + L + V E + Sbjct: 118 THEFASRMLVELGVLSDHDPSSVLMTDLAPLATEVSDDHYLAQY--LDYDRPPSVREKRE 175 Query: 189 GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR-IDTVKQQWRDAVGELDALI 247 + + P D S + R + D +G+L + Sbjct: 176 LSRDVAVKYGEVPIFSKDDADTPVQDVLWALSVREDVRRRSKSRSVHTFDDLIGDLVKAL 235 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 R R+ A + ++T+ Q Sbjct: 236 RDPY--RGPLARATLAHRFGLVMVDEFQDTDPLQ 267 >UniRef50_A5GUA0 Exodeoxyribonuclease V beta chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GUA0_SYNR3 Length = 1189 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 309/1208 (25%), Positives = 510/1208 (42%), Gaps = 120/1208 (9%) Query: 4 VAETLDPLRLPLQGERLI-EASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + E LD L PL G ++ EASAGTGKT+ ++ LR + ++++LVV Sbjct: 1 MIEPLD-LNGPLTGGTVVLEASAGTGKTYALSHRVLREV--------GENGRAIDQILVV 51 Query: 63 TFTEAATAELRGRIRSNIHEL------RIACLRETTDNPLYERLLEEIDDKAQAAQWLLL 116 TFT AA AE+R RIR+ + E R+A +P + L+ Q + LL Sbjct: 52 TFTRAAAAEIRRRIRTRLEEASTVLAYRLANDNRLASDPTLDELISRWAASPQGVEVLLN 111 Query: 117 AERQMDE---AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 + +D A + TIHGF QR++ N G+ +++L E L + D+ R Sbjct: 112 LLQAIDRIDLAPITTIHGFIQRLIQDNGTLLGLDPQRRLREGGRSLLQELVNDWRRSVLS 171 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD-----ETLASRHAQIVAR 228 P P V L + + + + ++ P D + RH + Sbjct: 172 PAPAPWQAWVQSHSDLSLDGLMKLAQLVDDDRDMLLPEPLDTGATAVDGWQQRHERFERL 231 Query: 229 IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 + + +A+ +L + ++ A+ + + A A + + + ++ Sbjct: 232 LASDGISTGEAMQQLCKGTGNKSPAGALLGKTKLAQ-LPDLIAIARDRNDIKTYRKLVQA 290 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 FS L+ + P L A +QL EP+ + ++T + +R+ + ++ + E Sbjct: 291 FSTSQLKRVLADPDQAPSSGLHRAAEQLCFEPI---EQLLTDLVHALRQGAWQRRQLKQE 347 Query: 349 LGFDDMLSRLDSALRSESG-EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 + F D+L R+D A S L + + +IDEFQDTDP Q+R+F ++ E Sbjct: 348 MSFGDLLERVDPARLSPPVLAGLKQWRQQQLSCCLIDEFQDTDPIQWRLFAALF--DGEA 405 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNKLFSQTDD 466 L LIGDPKQAIY FRG DI TY A S ++LDTN RS P +++ +N+LF+ + Sbjct: 406 PLTLIGDPKQAIYRFRGGDIRTYRSAVSTPERQRFSLDTNRRSDPALLSVLNRLFAG-EG 464 Query: 467 AFMFREIPFIPVKSAGKNQALRF-VFKGETQPAMKM-WLME---GESCGVGDYQSTMAQV 521 +F I + V++ R G P ++M WL E G+ +G+ + ++ Q Sbjct: 465 SFGSPTIDYRMVQAPEHASPSRLRCADGSPAPPVRMRWLGEADGGKPLKLGELRDSLPQR 524 Query: 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYL 581 ++ L +G L GD R + D++VLV +EA ++ L IP+ Sbjct: 525 VCDDLQRTLSSGME----LQQGDGWRALHPGDLAVLVGRNREAVALQRELQRRGIPARIG 580 Query: 582 SNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVV 641 D ++++ EA + L++ + +S+ G A ++ + W Sbjct: 581 RGGD-LWQSPEAASLSLWLESSERQGDRRAAAALALSSVGGFLAAELSGWS--PSDWGAW 637 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE--AGT 699 +++ + RQ + G + L + +A L A GE+RL+D ++ELLQ+ Sbjct: 638 LQQLEQARQRYALVGPLAALEVVQAAGPGLPRLRGQANGEQRLSDRRQMAELLQQSWQDQ 697 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 S L+ WL++ L +QQ R+ + + +V + T+H SKGLE+PLVW P + Sbjct: 698 GRPSAARLLHWLNEQQLFGGEGEDAQQ-RIVASESMVTLTTLHSSKGLEFPLVWCPTLWE 756 Query: 760 F--------RVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA--ERLAEDLRLLYVALTRS 809 + R E ++P + L EA E E LRL YVALTR+ Sbjct: 757 VDGGVDAEAPFRAWDPSQQRRVLELSRRSGSSPRAERLMEARLEGWQERLRLGYVALTRA 816 Query: 810 VWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD-----------AAGLRTCIE 858 L + K + L L++ E + A+ LR ++ Sbjct: 817 KHQLCLDWGRI------KDSGASLPAWLLHPELRQQEAEQPWQAIADHISRASDLRQALQ 870 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT---LQRLPGDNWRVTSYSGLQQRGHG 915 CD+ + P +T L A R P +W SYS L H Sbjct: 871 HRCDELGIHLEDLNPEAPPAYRPAANTQPLAAAAAMIPPRRPFSSWGRWSYSRL----HD 926 Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLT-------PHQFPRGASPGTFLHSLFEDLDF---- 964 +Q L P + P + P GAS GT +H++ E LDF Sbjct: 927 QSQTLSPSAREEEGFDPDRESSPEDPGGAEDPCWRELPGGASFGTLVHAILEQLDFEADL 986 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEME 1022 + P VR+++ G + Q L I +LQ PL L+Q+++ + E+ Sbjct: 987 SSPEVRQLVRDEVARSGLDPQLSNSLLGAIEVLLQRPLGGPLGDCQLNQIASGDTLRELP 1046 Query: 1023 FYLPI-------SEPLIASQLDTLIRQFDPL--SAGCPPLEFMQVR---GMLKGFIDLVF 1070 F +P+ S ++ L+ L DP+ S L+ Q + G L G IDL+ Sbjct: 1047 FDIPLSGFSASPSSDVLGEALEQLAAHHDPVVQSYARERLQQRQAQLSSGFLNGVIDLII 1106 Query: 1071 RHEGR-----YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 R R + +LD+K+N L + + M A Y LQ QLY A+ R+L R Sbjct: 1107 RRPSRDGTQHWVVLDWKTNRL--------VRPINDLMAAKDYWLQAQLYRQAVQRWLHWR 1158 Query: 1126 IADYDYEH 1133 + + Sbjct: 1159 LGEETPVR 1166 >UniRef50_C9RQA8 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA8_FIBSS Length = 1266 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 290/1293 (22%), Positives = 512/1293 (39%), Gaps = 189/1293 (14%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 E + IEASAGTGKT+TI L + L+ LG ++++L+VT+T Sbjct: 2 ENFSLNKFDPSQSLFIEASAGTGKTYTI-QLMVSKLIKLGTP--------LKKILIVTYT 52 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 E A EL+ RIR I E+ I + +D+ E + D A A + +D AA Sbjct: 53 EKAAGELKDRIRKKIDEVLINRKIDKSDDSE-----EPLSDAKIA--LFTKAYQDVDNAA 105 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFW--RRHCYPLPREIAQ 181 +FTIH FCQ+ L A+++G F +I+D+ L + D W L + Sbjct: 106 IFTIHSFCQKALKEFAYDAGRPFNMSMIDDKEVNDLIEKFIRDNWSEDEEFKALLVNAEK 165 Query: 182 VVFETWKGPQALLRDINRY----------LQGEAPVIKAPPP--DDETLASRHAQIVARI 229 K + IN Y ++ E+P I+ E + + + Sbjct: 166 TSSLINKLKDLFTKAINVYKGKNDNGEEIIKLESPSIEWGEDCISKEEAEALLEKDIVDF 225 Query: 230 DTVKQQWRDAVGELDALIESSGIDRRKFNR------SNQAKWIDKISAWAEEETNSYQLP 283 +++K+ ++ + L + D+ ++ + ++ I W + T + P Sbjct: 226 ESLKK-FKKFYSNVQILEKDENKDKIYYSEEISSGEKAISDLLNTIHTW-DSSTKNPFTP 283 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPL--FEAIDQLLAEPLSIRDL--VITRALAEIRETV 339 + K D + + I + L E L L + + E+ + Sbjct: 284 TKIGKNITDVPNDEFGNALKYVHERISKLSKIKEALQEELDSYPLKKFLFDHIPELFDEW 343 Query: 340 AREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 + K F+DM+ + A+ +S+ L +R ++ A+IDEFQDT+ Q+ IF Sbjct: 344 QKYKTDMKAQSFNDMILSVHQAVLDKSKGESPLKTRLRAQYTYAIIDEFQDTNQLQWDIF 403 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 ++ + ++GDPKQ+IY+F+GAD+ Y KA +++ +L TN+RS G+++ Sbjct: 404 SAVFDK-----IFVVGDPKQSIYSFQGADVNVYQKAIQKINNGMSLKTNFRSTKGIIDGC 458 Query: 458 NKLFSQT---DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY 514 N LF+ + + + F S K ++ + + + +W+ + + Sbjct: 459 NDLFNDSFFKPYEGSPKLVDFESSLSPDKEGQVKALPQINGKEVAPIWISQQNIDEID-- 516 Query: 515 QSTMAQVCAAQIRDWLQ-AGQRGEALLMNGDD---ARPVRASDISVLVRSRQEAAQVRDA 570 AQ +I +W G + + + D R V D +VL R+R E ++ DA Sbjct: 517 ---FAQATVQKIVEWCSFVGDKTVLQVFDKKDCTKLRNVSFKDFAVLARTRSEMDEIEDA 573 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE----RENTLRSALATSMMGLNAL 626 + +P + ++F + E E + L +A+ P+ L AL T ++ Sbjct: 574 MRAAGVPFSRYKD-SNLFSSRECTEWIALFKAIDAPDFSAWNRRLLSEALITDFFRISYQ 632 Query: 627 DIETLNND--EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 +IE + ++ + + V ++ + + ++ +KR ML + S I E L + +L Sbjct: 633 EIEYVESEAFDDPENPVRKKINSWHELVQKRRYAEMLERIYSDTQIEERLTEIS----KL 688 Query: 685 TDILHISELLQEAGTQLE----SEHALVRWLSQHILEPDSNASSQQMRLE--SDKHLVQI 738 ++ + ++ A L S LVR L +E +D VQI Sbjct: 689 QNLAKLRQIGNYAVEYLYNHNCSIEDLVRHLEALASYNAGTDDEDGNLIEKSTDYDAVQI 748 Query: 739 VTIHKSKGLEYPLVW--LPFITNFRVQEQAF-YHDRHSFEAVLDLNAAPESVDLAEAERL 795 +TIH SKGLE+P+V F + F YHD+ L + E L Sbjct: 749 MTIHASKGLEFPIVISVAGFKQKIKTDSGPFLYHDKDEIR----LGFGSIAKKRRAQEEL 804 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG--- 852 E RL YV TR+ L + + K + +S++ L++ E +D+ Sbjct: 805 EEWKRLFYVDFTRASSILILPRYEKWYGKDNVKEEFKFLESSINELIKADEKRDSDKKLT 864 Query: 853 -----LRTCIEALCDDDIAWQTAQTGDNQPWQ---------VNDVSTAELNAKTLQRLP- 897 L DD+ + + + + +++ ++N +LQ+ Sbjct: 865 TVLPKLEKWEPKKLSDDVKTKILKPLNEKSGAGAVLTSEEIAQNIAQQKINMASLQKKLA 924 Query: 898 GDNWRVTSYSGLQ-QRGHGIAQDLMPRLDVDAAGVASVVEEPTL---------------- 940 G + SYS L + I D R D D + Sbjct: 925 GASIMQHSYSTLSGKADSQIESDDGNRPDRDDEEKTAAKTSTVKIRDIDTEAKNCTTAFN 984 Query: 941 -----------TPHQFPRGASPGTFLHSLFEDLDFTQ-------------------PVDP 970 T +FPRG+ G LH +FE+ F Q ++ Sbjct: 985 PKLNYQTNLNETAKKFPRGSHAGNALHRIFENTKFKQFGEENSTFEQALANPKTINLIEE 1044 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--------TGVSLSQLSARNKQVEME 1022 + RE L + W + T + L A L E +L+ + + E++ Sbjct: 1045 EFKRESLPIWNHREAWLDIATHYTWNTLNARLPEIAGSTTTSETFALTDIPENDHMPEVQ 1104 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH---EGRYY-L 1078 F SE +Q + D L C KGFIDL+F +YY + Sbjct: 1105 FNQDASEETDENQAISETSASDILRRFC------------KGFIDLLFVRTVNSQKYYSI 1152 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH--------RIADYD 1130 LD+KS+ L + YT +A+ + + Y +Q LY+ L ++L+ +++ + Sbjct: 1153 LDWKSDMLENNV--YTPEALKEKV-DNDYSIQRVLYSYCLIQWLKQFYGKGTTENLSEAE 1209 Query: 1131 -YEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 +E HFGG+ Y F+RG + P +GIY N+ Sbjct: 1210 IFEKHFGGIYYAFIRGTEGGTP-KGIYAQTWNS 1241 >UniRef50_D0LU04 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU04_HALO1 Length = 1284 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 308/1267 (24%), Positives = 503/1267 (39%), Gaps = 141/1267 (11%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 +++EASAGTGKT+ I + LLL +E++LVVTFTE ATAELR R+R Sbjct: 46 HQVVEASAGTGKTYLIEHRVVDLLLSTDTP--------IEQILVVTFTEKATAELRFRVR 97 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I + A ++ + R+ A+A + L A D AA+ TIH FCQR+L Sbjct: 98 RLIENVAAARQHTAAEDAPHWRI------DAEARRKLTDAMLGFDRAAIHTIHAFCQRVL 151 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV--FETWKGPQALLR 195 NAF S LF Q + E+ A R + + + + L + Sbjct: 152 TENAFSSRRLFAQTQVAGEAAFGD-AFKAALREELAREDDHKRYLAAWYRSGRSVDDLEK 210 Query: 196 DINRYLQGEAPVI------------KAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 + R ++ +A + AS +A I + + A Sbjct: 211 LLFRCASQSGRMVPEFDEAALASRLRAASAEMPACASDEDAFLAAIKRAGVRGQSARAVY 270 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 L + ++ A ++ A + + E L + LE + Sbjct: 271 RRLALLRELLDGFAVHADIADFLVAFEA--ADGAVTSSGKERLLDYVAGHLESAD--IDD 326 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 + + L + + V R + + +K R G+ F DML + +L Sbjct: 327 DALAAARDVVLDLAGVIVPLSAAVAQRFSPSVVARLESDKNRYGQFDFQDMLRLVWESLD 386 Query: 364 SESGEV----LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE-----TALLLIGD 414 ++ + L A +R R+ A+IDEFQDTD Q++IF +++ P+ L +IGD Sbjct: 387 MDASQAIEDSLRARLRERYRYALIDEFQDTDELQWKIFGQLYLGGPDEPPPDNRLCIIGD 446 Query: 415 PKQAIYAFRGADIFTYMKARSEVHAH----YTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 PKQAIY+FRGAD++TY++AR V L N+RS +V + N +F+ + Sbjct: 447 PKQAIYSFRGADVYTYLEARERVQERGGQITNLVDNYRSTDALVRAYNTVFA---SRYFS 503 Query: 471 REIPF-IPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDW 529 EI + PV++A A + T + E + + + AA++ Sbjct: 504 GEIRYDHPVRAATDLTACGPDGRAITPIRLLHVKPEQGKLRAEILRQALLERIAAEL-GL 562 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 L + D RPVRA D+ VL R+ +E+ +V D L IP + ++ + + Sbjct: 563 LLGDPAHAIAVGPPDAPRPVRAGDVFVLTRTTRESNEVADRLRQAGIPCA-IYKQEGLLQ 621 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR 649 T EA+E+ +L + P R + A T G D+ L D + ++ Sbjct: 622 TREAREVRDVLCGIAEPRRRSARFQAWTTRFFGATLSDLPYLA-DLPETHPFLARLYEWK 680 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALV 708 + + + +++ I E L ER LT+ LHI ELL+E + H L+ Sbjct: 681 ALAERLEYETLFTSILGDSGIIERELFLESSERALTNFLHIFELLREEVVRSRCDLHELI 740 Query: 709 RWLSQHILEPDSNASSQQM---RLESDKHLVQIVTIHKSKGLEYPLVWL-PFITNFRVQE 764 L + I++ + + R+ES++ VQ++TIH+SKGLE +V+L + E Sbjct: 741 ARLERWIVDTAEGTQADERNIQRMESEEAAVQVMTIHRSKGLEAKIVFLYGGFSAMPGDE 800 Query: 765 QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL-GVAPLVRR 823 YH+ + A + + E +E RL YVA+TR+V L V P R Sbjct: 801 VQVYHEGSERLVHVGGAARRDVAEAVRRESESESQRLYYVAITRAVARLYLPYVDPDDYR 860 Query: 824 RGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDV 883 G + + + L+KG+ + +A L + A Q W+ Sbjct: 861 VSGAYGQVNRRLEDIVQRLRKGDDELSA-LFSLQRIATGTPPAPPVPLPRVLQTWRPPAK 919 Query: 884 STAELNAK---TLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD--------------- 925 A L R + VTSYS ++ + +L Sbjct: 920 LLEPAPAALDYALARERRAGFVVTSYSAMKNAEPALYAELANADARRVLAQGDAVANDTA 979 Query: 926 --------------VDAAGVASVVEEPTLTPHQ------------------------FPR 947 + A+ + P P Sbjct: 980 DADADADTDSDSASAASDSTAASAQAPAPMLFSDQSSGIGDAGADESATGVRAAEDELPG 1039 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVL-------------TEWI 994 G G FLHS+ E L F + + + E S + ++ + Sbjct: 1040 GPQSGVFLHSVLEHLPFASLAEADGFDDWCERPEVASVFADLMLRHGRDPAHLRYSQRVV 1099 Query: 995 TAVLQAPLNETGVSLSQLSA-RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 L PL + L++ E+EF PI + S ++ Sbjct: 1100 YQCLSTPLRVGRKIVPNLASCSENLRELEFVYPIPQLAPRSSDSAAAAAAQASASATTGR 1159 Query: 1054 EFMQV-RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 + ++V RG +KG IDLVF+ +GR YL+D+KS+ L ++Y+ +A+A + + Y LQ Q Sbjct: 1160 DPVRVERGYIKGIIDLVFQFQGRAYLIDWKSDIL----ASYSNRAVARRVYST-YRLQAQ 1214 Query: 1113 LYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV----DKEHPQQGIYTTRPNAGLIALM 1168 LY LAL + L ++ + FGG++Y F+RG+ D E G+Y RP IA Sbjct: 1215 LYALALVKMLGIE-SESQHRRRFGGLLYCFVRGMSTFADDEGRLPGVYYARPRLDDIAAF 1273 Query: 1169 DEMFAGM 1175 + AG Sbjct: 1274 ERALAGQ 1280 >UniRef50_P96920 Exodeoxyribonuclease V beta chain n=28 Tax=Actinomycetales RepID=EX5B_MYCTU Length = 1094 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 258/908 (28%), Positives = 392/908 (43%), Gaps = 82/908 (9%) Query: 324 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMI 383 + V R AE+ E + R K R GF+D+L RL +AL + +R R+ + ++ Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA-RDRMRERWRIVLV 261 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTL 443 DEFQDTDP Q+R+ R + +AL+LIGDPKQAIY FRG DI TY+KA A YTL Sbjct: 262 DEFQDTDPMQWRVLERAFSR--HSALILIGDPKQAIYGFRGGDIHTYLKAAGTADARYTL 319 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 NWRS +V S+ + D +I V+ + A + ++ + Sbjct: 320 GVNWRSDRALVESLQTVLR--DATLGHADIV---VRGTDAHHAGHRLASAPRPAPFRLRV 374 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 ++ + G + I D L A RPV A+DI+V+V ++ Sbjct: 375 VKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAADIAVIVEHHKD 434 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A R+AL IP++Y + D VF + A++ L LL+A P+R +R+A T G Sbjct: 435 ARACRNALAEAGIPAIYTGDTD-VFASQAAKDWLCLLEAFDAPQRSGLVRAAACTMFFGE 493 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 A + + D V + R RGV + +A + +L+ GGER Sbjct: 494 TAESLAA--EGDALTDRVAGTLREWADHARHRGVAAVFQA-AQLAGMGRRVLSQRGGERD 550 Query: 684 LTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 LTD+ HI++LL EA + L WL + + + RL+SD VQI+T+ Sbjct: 551 LTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQ-AKAGAGPPEHNRRLDSDAAAVQIMTVF 609 Query: 743 KSKGLEYPLVWLPFI--TNFRVQEQAFYHDRHS---FEAVLDLNAAPESVD-LAEAERLA 796 +KGL++P+V+LPF N R + YHD + + D A +V+ L E Sbjct: 610 VAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAH 669 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 ++LRL YVALTR+ AP D L RLL+ P + C Sbjct: 670 DNLRLTYVALTRAQSQVVAWWAP----------TFDEVNGGLSRLLRGRRPGQSQVPDRC 719 Query: 857 IEALCDDDI-----AWQTAQTGDNQPWQVN-------DVSTAELNAKTLQRLPGDNWRVT 904 + D+ W+ A + + V + R WR T Sbjct: 720 TPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRT 779 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAGVA-SVVEEP------TLTPHQFPRGASPGTFLHS 957 SYS L + + P A V +VV P T P GAS G+ +H+ Sbjct: 780 SYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHA 839 Query: 958 LFEDLDFTQPVDPNWVREKLELGG-------FESQWEPVLTEWITAVLQAPLNETG--VS 1008 + E D P + ++ +Q P L + + PL ++ Sbjct: 840 VLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALT 899 Query: 1009 LSQLSARNKQVEMEFYLPISEPL------------IASQLDTLIRQFDPLSAGCPPLE-- 1054 L Q+ R++ E++F +P++ + L + + DPLS L Sbjct: 900 LRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSA 959 Query: 1055 ---FMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 +RG L G ID+V R G RY ++DYK+N LG+ ++ Y + + AM Y LQ Sbjct: 960 GLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQ 1019 Query: 1111 YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP------QQGIYTTRPNAGL 1164 LY + LHR+LR R DY H GGV+YLF+RG+ G++T P L Sbjct: 1020 ALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTAL 1079 Query: 1165 IALMDEMF 1172 + + ++ Sbjct: 1080 VVALSDLL 1087 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 105/259 (40%), Gaps = 15/259 (5%) Query: 2 SDVAETLDPLRLPLQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 D E L PL P +G ++EASAGTGKTF +A L R L T++E+L Sbjct: 1 MDRFELLGPL--PREGTTTVLEASAGTGKTFALAGLVTRYLAETAA--------TLDEML 50 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRE-TTDNPLYERLLEEID-DKAQAAQWLLLAE 118 ++TF AA+ ELR R+R I E A + L E LL D ++AQ L A Sbjct: 51 LITFNRAASRELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDAL 110 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 D A + T H FC +L + +L E + L + D + + + Sbjct: 111 ANFDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETD 170 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR-HAQIVARIDTVKQQ-W 236 E A++ D L+ P + A+ ++ R ++ Q + Sbjct: 171 PELTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGF 230 Query: 237 RDAVGELDALIESSGIDRR 255 D + L +E++ R Sbjct: 231 NDLLIRLATALEAADSPAR 249 >UniRef50_B0SIS6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS6_LEPBA Length = 1209 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 285/1250 (22%), Positives = 502/1250 (40%), Gaps = 148/1250 (11%) Query: 14 PL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 PL IEASAGTGKT I + ++ + L + LV+TFTE A EL Sbjct: 6 PLVNHPNFIEASAGTGKTHLIMQMLGDVMTHDVTNHTKENRLL--QFLVLTFTEKAAGEL 63 Query: 73 RGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGF 132 + R++ I EL E +P Y L R +D+ + TIHGF Sbjct: 64 KARLKLKILELY-----ENGKHPEYYHYL-----------------RDLDQVTISTIHGF 101 Query: 133 CQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA--QVVFETWKGP 190 C +L E+ +L +E L + D R +E ++ K Sbjct: 102 CNMVLTEYPVETQNNPNVKLTSNE-ELIRKTFYDLKRSQWEGRDKESLANDILISNLKKK 160 Query: 191 QAL-LRDINRYLQGEAPVIKAPPPDDETLA--SRHAQIVARIDTVKQQWRDAVGELDALI 247 + L + ++ L + E + + ++ + T+ + ++ GE A Sbjct: 161 EDLVISSTSKLLADTKDYVFPEFVSLEECIHNANKSNLLGELITICEAFKGPTGEAIAAQ 220 Query: 248 ESSG------IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 + G + +A + A+E +L SL K + D Sbjct: 221 GAKGSIPKWMENWSSLESFAKAIRNEDTKYIAKELKRISKLSRSLGKEGKASGFDYFLLE 280 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDLVITRAL--------------AEIRETVAREKR--R 345 G T +A +L + L + + E ++ K Sbjct: 281 GSTTIAKNLDAASVVLQGKIKSVVLSLKEIFPLGQLDYDGSIFLQNTVHELTSKTKSIIE 340 Query: 346 RGE-LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 GE L +D M+ ++ + ++L ++R RF V ++DEFQDTD QY+IF+ ++ + Sbjct: 341 NGEYLTYDQMILKVYDVIVRNPNQILIQSLRERFQVCILDEFQDTDKNQYQIFKTLFLDK 400 Query: 405 PETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNKLF 461 + L IGDPKQ+IY FRGADI Y++A + + TL+TN+RS +++ +N +F Sbjct: 401 DTKSRMLFCIGDPKQSIYGFRGADIGIYLEASRDFEGSKSTLETNYRSTKELIHGLNTIF 460 Query: 462 SQTDDAFMFREIPFIPVKSAGKNQA--------------LRFVFKGETQPAMKMWLMEGE 507 D+ + E F P++ G ++ +++ + + A+ ++ E Sbjct: 461 --HDETKEWGETHFFPIEEPGSSKENYLYKKVSSPDIDTIKYKYVNPEESAIHIFDFEER 518 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 V ++ A+ +I+ + + ++ DI++L +++E V Sbjct: 519 FPNVNKSRNIWAETIRNEIKRIQNKETSLLYNKKGEREIQEIKLKDIAILCGNKKETELV 578 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 LT IP R ++++ EA ++ LL+ + + + + L + + ++ + Sbjct: 579 EFYLTKAGIPCSIYKQR-GIYQSREADQIENLLECLQSSNSSQSYKKILFSDIFCIHPHE 637 Query: 628 IETLNNDEHAWDVVVEEF-DGYRQIWRKRGVMPMLRALMSARNIAENLL-ATAGGERRLT 685 I+ DEH+ D + D ++++ ++ R++M + T ER+ T Sbjct: 638 IQKF--DEHSIDSYEKSLIDKWQRLIKENRYASFFRSVMDETKLFWLEGNHTLEWERKRT 695 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL---ESDKHLVQIVTIH 742 + I + L E QL+S L+ L+ S ++ L E+++ VQI+TIH Sbjct: 696 NFRQIFQKLLE--VQLKSNCGLLELLASLRELKQKKQSPEEEPLFDRETEEDSVQILTIH 753 Query: 743 KSKGLEYPLVWL-------PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL 795 SKGLE+P+V+L +TN + + + +LDL + E L Sbjct: 754 ASKGLEWPVVFLFYFGNRGTNLTNTEYPIEIETPEGKKRKWILDLWDLNPEKEDEENHFL 813 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGD----KKGDTDVHQSALGRL--LQKGEP-- 847 E RLLYVALTR L R + + G + + L R+ LQ P Sbjct: 814 NEQKRLLYVALTRPNLRLYLPKLNWGRSKKEDSLPNSGYSQILYQELIRIQTLQNQNPFL 873 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 + + R E I QT+ + + +E+ G SY+ Sbjct: 874 ESSFVFRNPNEFSESQTINLQTSSVTQTKKPSFPILYPSEI-------KIGRVLLQHSYT 926 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ- 966 LQ + + + T + P A G FLH + E DF+ Sbjct: 927 SLQANEKNLNVSQE----EKKKELEETPDVEVSTTFELPSSAKVGNFLHKILELCDFSTF 982 Query: 967 ---------------PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL---NETGVS 1008 +++R LE+ G +++ E + + + A + S Sbjct: 983 QLEVDAILESPSWKWAYQKSFLRYPLEIEGKDAKIEHTVATLLKHAMTAKIKLATGNSFS 1042 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 LS+L K E++F+L + L S +L F+ LKG IDL Sbjct: 1043 LSELKEEEKSAELKFHLFLQNLLKESG-ASLTDGFEH---------------YLKGAIDL 1086 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 VF + ++Y++DYKSN L + Y+ +A+A A++ Y Q +Y+ L YL+ Sbjct: 1087 VFVKDQKFYIVDYKSNLLPNN--DYSSEAVANAVRDKGYLFQKSVYSFILFEYLKSLFGP 1144 Query: 1129 YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 FGGV YLFLRG+ ++ Q GIY+ ++ + +++ F G+ E Sbjct: 1145 DIALEKFGGVYYLFLRGMLGDN-QTGIYSDLKHSDSVWTIEQ-FEGIKKE 1192 >UniRef50_C8PVF0 UvrD/REP helicase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVF0_9GAMM Length = 1504 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 283/1298 (21%), Positives = 475/1298 (36%), Gaps = 250/1298 (19%) Query: 106 DKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACA 165 + A Q LA Q+D V T+ CQ+ L + E+G E Q+ D S + Sbjct: 222 NFRIALQRTTLALNQLDRLFVSTLDSLCQKWLREYSSETGFSAEVQISNDVSGIIKGMIH 281 Query: 166 DFWRRHCYPLPREIAQVVFETWKG-----PQALLRDINRYLQGEAPVIKAPPP--DDETL 218 D R + + ++ + +NR L I P D T Sbjct: 282 DQIRAFMAQVNANMPELYPMMFDNNVFLPVDDYYEAVNRALNFYTADIDTVPLTAFDTTA 341 Query: 219 ASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQA-KWIDKISAWAE--- 274 Q +A D E +A +S + F+ N+ K ++I Sbjct: 342 IKALMQSIAD---------DNDSEFEAYFDSDFRKAQGFSAGNKLHKHFNEIKNLQNLLS 392 Query: 275 --EETNSYQLPES------LEKFSQRFLEDR---TKAGGETPRHPLFEAID---QLLAEP 320 + TN + + + LE ++ D+ +K ++ F+ +D QL+ + Sbjct: 393 TGDITNVFAMYKVGNIVKVLEGIEDLYVNDKGFNSKKEQQSATFKSFDIVDNIWQLIQQT 452 Query: 321 LSIRD------LVITRALAE-IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAA 373 +++D + ++ +R + + + F L+RL+ AL + G+ LA Sbjct: 453 QALQDYFKQVNFYFIQFISRYVRTHLPKRLESQRLTTFALQLARLNDALSGKKGQSLARY 512 Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ----------------PETALLLIGDPKQ 417 IR ++P+A+IDE QD + +Q + +R++ P LLL+GDPKQ Sbjct: 513 IRHQYPIALIDESQDINTEQALLIQRVYLQDFEPETAEKSNTKKYHTPSQFLLLVGDPKQ 572 Query: 418 AIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFS-------------- 462 AIY FRG D+ Y + +L+ N RS+ +++S+N + Sbjct: 573 AIYGFRGGDVQNYTTLKKLFPEKPKSLNQNHRSSAALIDSLNHWYGVGEQDIDPNQADQL 632 Query: 463 ---QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ----PAMKMWLMEGESC------ 509 FM REI + + + +N L F + + PA +E ++ Sbjct: 633 PNVNQQPYFMGREIYYRKISATRQNAELVFANVVDNEAASLPAFNHIAIEYKAPYSQQVV 692 Query: 510 --------------------GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 + A AAQI D G+ R + Sbjct: 693 AVAENDGTSNDTDSSNDIISSSDERTVDYADAIAAQIFDLFDDGKP------LSYQTRGL 746 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 SDI VL E + L I +V SVF + +++ L ++TP E Sbjct: 747 TLSDICVLAVKNSELHTIEKRLHHHGIATVR-GGSQSVFGDSMSVDLMTLQSVLLTPFSE 805 Query: 610 NTLRSALATSMMGLNALDIETLNN-------------------DEHAWDVVVEEFDGY-- 648 + L+S + +S L I L + + + + + E Sbjct: 806 SKLKSLMLSSFFQLTLEQINQLYDALNQTNAQAAQGQAQPHQAHQASTNTSLAEIQQLVL 865 Query: 649 --RQIWRKRGVMPMLRALMSA---------RNIAENLLATAGGERRLTDILHISELLQEA 697 ++W+K + ++ L++ N + L GER L D+ + +++ + Sbjct: 866 TASELWQKHSFLVAIQWLLNQPLTLPSQTTLNFWQRLAKHPNGERLLIDLRQLLDIISDQ 925 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757 EH L W + + S Q RL SD+ VQ++T+H SKGLE+P+V++ Sbjct: 926 FNGQVGEHQLFEWFCAQVQQQPKEDWSTQQRLPSDEG-VQLMTVHASKGLEFPIVFVVGF 984 Query: 758 T-----NFRVQEQAFYHDRHSFEAVLDLNA-----------------------------A 783 T FR Y + + +A + Sbjct: 985 TGESKAKFRGAPLYLYGIQTTHQATPQFTQKLTQNNNNPLLSRRLTALPTQIADNNSIDS 1044 Query: 784 PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP---LVRRRGDKKGDTDVHQSALGR 840 V + + E LRLLYVALTR+ L VR D+ + A+ Sbjct: 1045 INYVAIEDQSAYEERLRLLYVALTRAKEQVYLVTVAKKSAVRNSALAPFMDDLAKFAVKE 1104 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP--- 897 L + + + D + + N+ + A+++ + ++ Sbjct: 1105 TLTETTHIIDS---NSLSKYYDSKLKFTPKTNRQNEQNATVAKTVAKIDYDEIIKVITID 1161 Query: 898 -GDNWRVTSYSGLQQRGHGIAQD----LMPRLDVDAAGVASVVEEPTLT----------- 941 W TS++ L + + D R D D A + P Sbjct: 1162 TFKGWANTSFTALSRYIEHTSVDTVVNAEDRQDDDILSAAQIRLLPISNSRLARESGNEV 1221 Query: 942 ---PHQFPRGASPGTFLHSLFEDLDFTQPVDPNW------------------VREKLELG 980 F +G +PGTFLHS+ ED+ P V L Sbjct: 1222 NSIRFNFEKGTNPGTFLHSVLEDIANNYNETPELAVPQQDARADKLKRWSVMVDRTLRRY 1281 Query: 981 GFES--------------QWEPV-----------LTEWITAVLQAPLNETGVSLSQLSAR 1015 S W + L +W+ ++ PL + V L + Sbjct: 1282 QMPSNYFSTKESSAGQYGNWHDINIDDLQPDYVALVDWLDDIIHTPLAASSVPLVNIKYN 1341 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 K E+ F L +++ L S L+ L QFD V LKG IDLV++H + Sbjct: 1342 QKVAELGFNLRLNQHLSFSDLNALFHQFDIPLQLQSQEVNTMVWQYLKGEIDLVYQHGTQ 1401 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 ++++DYKSN+LG D +Y Q A+ AM H Y LQ +Y +ALHRYL+ R+ +YD H Sbjct: 1402 FFIVDYKSNYLGNDFDSYNQAALYDAMTTHSYWLQASIYQVALHRYLKLRLPNYDISTHL 1461 Query: 1136 GGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 G V Y FLRG+ +H +G + ++ I +D+MF Sbjct: 1462 GAVEYAFLRGMSPKHDTRGKLVKQFDSAFILALDDMFG 1499 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 12/133 (9%) Query: 5 AETLDP--LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 AE L P + LPL G LIEASAGTGKT+T+ + LRL++ G E+++ Sbjct: 39 AEPLLPPAVTLPLTGRHLIEASAGTGKTWTLTGVMLRLIVQAGQP--------CEKIIAT 90 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFT +A AE+R RIR + + L + ++ + L + D ++A A Sbjct: 91 TFTRSAAAEMRQRIRERLQDFY--QLLQMINHSTFTPLNDSDLDSSKAIAVQKYAHFIAQ 148 Query: 123 EAAVFTIHGFCQR 135 A+ T + Sbjct: 149 VQALATQKNLLGK 161 >UniRef50_UPI0001C3224E exodeoxyribonuclease V, beta subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3224E Length = 1132 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 266/915 (29%), Positives = 407/915 (44%), Gaps = 78/915 (8%) Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 R + R KR + FDD+L RL AL GE +AA + R+ +A++DEFQDTDP Q+ Sbjct: 220 RAELDRRKRAAALVTFDDLLLRLRDALEGPDGEAVAARLHRRYRIALVDEFQDTDPDQWA 279 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 I RR + T L+LIGDPKQA+Y+FRGAD+F Y+ A AH TL NWRS +++ Sbjct: 280 IMRRAFAAT-GTTLVLIGDPKQAVYSFRGADVFAYLDAARAADAHPTLRVNWRSDQRLLD 338 Query: 456 SVNKLFSQTD---DAFMFREIPFIPVKSA----GKNQALRFVFKGETQPAMKMWLMEGES 508 + + LF D ++R++ A G A + + A + L G + Sbjct: 339 AYDALFGAARLGHDEIVYRQVRAAAANRAPRLHGAPGAAPLRIRVVPRDAPTVRLTSGGT 398 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD--DARPVRASDISVLVRSRQEAAQ 566 ++ +A+ AA + L++G R E +G PV D++VLVR +A + Sbjct: 399 ASPASARAYVARDLAADVVALLESGARIETRDSDGRAVGHTPVGPGDVAVLVRRNVQARE 458 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 ++ AL +P+V ++ SVF + A++ L LLQA+ PE R+A T+ +G +A+ Sbjct: 459 IKTALEAAGVPAV-VAGGGSVFASESARDWLVLLQALERPELLARARAAALTAFLGWSAV 517 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 + D + + + + R+ GV + + S+ ++ LL GGERRLTD Sbjct: 518 RVAAAAEDAWD--ELQQRLHAWAGVMRRHGVAALTETITSSERVSVRLLEIVGGERRLTD 575 Query: 687 ILHISELLQEAGTQLE-SEHALVRWLSQHIL--EPDSNASSQQMRLESDKHLVQIVTIHK 743 + H+ ELL A + AL WL + I + D++A + RLESD VQ++T+H+ Sbjct: 576 LRHVGELLHAASADEQLGITALAAWLRRRIEAGDRDADADDRARRLESDAEAVQVLTVHR 635 Query: 744 SKGLEYPLVWLPFITN----FRVQEQAFYHD-RHSFEAVLDLNAAPESVD------LAEA 792 SKGLE+P+V+ P++ + A +HD + +D+ ++ D + Sbjct: 636 SKGLEFPIVYCPYLWDPIWIPNEPLPATFHDAANGGARTIDVALDEDNQDYRRHQRQDKE 695 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG----EPQ 848 E+L E+LRL YVALTR+ + A R G + A G + G + Sbjct: 696 EQLGEELRLAYVALTRARHQAVVWWAGSWSSRNSALGRLVFERDADGNVPATGSFTPTDE 755 Query: 849 DAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 A + A IA + A D W L A T R WR TS++ Sbjct: 756 AATDRFRQLAAAAAGAIAVERATVVDGVRWSPPQEPWTLLEAATFDRALDQRWRRTSFTT 815 Query: 909 LQQRG--HGIAQDLMPRLDVDAA------------GVASVVEEPTLTPHQFPRGASPGTF 954 + +A +L D A + + P GA GTF Sbjct: 816 ITAGAFEARVASELEEAPGADDAVEIPLLLPSPSGDDRATASAAVSLLSELPAGARIGTF 875 Query: 955 LHSLFEDLDFTQP----VDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--TGVS 1008 +HS+ E DF + L+ + L + A ++ PL E G Sbjct: 876 VHSVLEATDFAASDLDGELTAHIGAALDRRRIDVGDPAALAGGLRAAIETPLGELAGGWR 935 Query: 1009 LSQLSARNKQVEMEFYLPISEPL----------IASQLDTLIRQFDPLSAGCPPLE---- 1054 L L + EM F LP+ +A+ L + DPL+ L Sbjct: 936 LRDLPRSARLDEMGFELPLVGGDAPTGELTLSAVAAVLRAHVAPDDPLAGYAERLSDPAL 995 Query: 1055 FMQVRGMLKGFIDLVFRHEGR--YYLLDYKSNWLGEDSS-----AYTQQAMAAAMQAHRY 1107 +RG L G IDLV R Y ++DYK+N L Y A+A MQ Y Sbjct: 996 RSHLRGYLAGAIDLVARRAEGVPYAIVDYKTNRLAAAGEALTPWHYRPAALAIEMQRSHY 1055 Query: 1108 DLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK------EHPQQGIYTTRPN 1161 LQ LY +ALHRYLR R+ D+ + ++Y FLRG+ + G++ RP Sbjct: 1056 VLQALLYAVALHRYLRWRVEDHHPDRDRPLIVYAFLRGMAGSATPVLDGAPCGVFAWRPP 1115 Query: 1162 AGLIALMDEMFAGMT 1176 GL+ + ++F T Sbjct: 1116 EGLVPALSDVFEEGT 1130 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 21/191 (10%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G ++EASAGTGKT+ IAAL R + + +++LL+VTFT AT ELR R Sbjct: 17 EGVTVLEASAGTGKTYAIAALATRYVAE---------GIPLDQLLIVTFTRMATGELRDR 67 Query: 76 IRSNIHELRIACLRETT-------DNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFT 128 +R + R A D + + A+ ++ A + D A + T Sbjct: 68 VRHRLASTREALDAIAAGAAPGVYDEVVRLLASGTSAEVARRRDRIVRALAEFDAATITT 127 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR-----EIAQVV 183 IH FCQ L F + + + + ED L + D + R P E +V Sbjct: 128 IHSFCQEALGELGFAADLDRDHRFQEDVRDLAEEVVDDLYVRGFLTRPPHFRRAEAGRVA 187 Query: 184 FETWKGPQALL 194 + P A+L Sbjct: 188 LKAIDNPSAVL 198 >UniRef50_D0SSR4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SSR4_ACILW Length = 1367 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 261/1077 (24%), Positives = 423/1077 (39%), Gaps = 124/1077 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M T + +G IEASAGTGKT+T+++L +R+ L +++ Sbjct: 1 MQKAISTNPIQDMKFRGLHWIEASAGTGKTYTLSSLMVRIFLD---------QYYPHQVI 51 Query: 61 VVTFTEAATAELRGRIRSNIHE-------------LRIACLRETTDNPLYERLLEEIDDK 107 TFT ATAEL+ R+R + E + I + +PL++++L++ + Sbjct: 52 ATTFTRKATAELKNRVRLRVEETLAYIQRHQQLNSVEITAKIQNETDPLFQQVLKDYGSR 111 Query: 108 AQ-AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACAD 166 A + L L Q+DE V T+ F Q++L AFESG + +L ED+ L Q D Sbjct: 112 LDYARRRLRLVLNQLDELFVGTLDSFSQKLLREFAFESGKIERAELTEDQDLYIQQLIHD 171 Query: 167 FWRRHCYPLPREIAQVVF-ETWKGPQA----LLRDINRYLQGEAPVIKAPPPDDETLASR 221 R P+ + ++ + P L+RD + + I+ D L + Sbjct: 172 VLRDWIQQQPQYMVNHLYVQNLLKPVEHYTGLVRDALNFSKQHFRKIEPAECDLNKLEAC 231 Query: 222 HAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 +Q+V D R E S + + N W SA + + Sbjct: 232 ISQLVNIQDHDLAVMRRYCQESPKYFHKSFLTKLTEICENFMTW----SAALKNQGGMSF 287 Query: 282 LPESLEKFSQRFLEDRTKAGGETP------------------RHPLFEAID------QLL 317 L+ R K P +H L AID Q L Sbjct: 288 FDAELQPIILNLCHLRRKKTDFQPTTQVFNKSCPDAEQQLILQHSLIVAIDALCEVKQYL 347 Query: 318 AEPLSIRDLVIT-RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRT 376 E L + + ++ + + +++GE F + L AL+ + G+ A ++ Sbjct: 348 DEQLQQLTTYLEFHIIQSVQTRLPQTLQQQGETTFSQQIRTLAEALQGQQGQRFAQFVQA 407 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKA 433 R+P+ ++DEFQDT+ Q + +IW ++++GDPKQAIY FRG D+ TY KA Sbjct: 408 RYPLILVDEFQDTNQDQDDLLAKIWRDVNRVQSGCMIMVGDPKQAIYGFRGGDMLTYNKA 467 Query: 434 ----RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF 489 R + YTL N RS +V V+ LF + D F E + AG Sbjct: 468 HADVRHKQGREYTLMQNHRSVKPLVEVVDALFQRQMD---FGEQVQYTLIQAGSRPHPDL 524 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 V G T P W+ GES A A +IR L + + + + Sbjct: 525 VDTGITNPQPLRWIQLGES-------DLEADQVAWKIRALLNQSAQQQLYFQQQEHQHSL 577 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 A DI+VL QV+ L + IP Y ++ SVF + AQ++ +L A+M P E Sbjct: 578 SADDIAVLGFGHFALEQVKQRLQRMGIPC-YKESKQSVFASPIAQDVAAVLTAIMDPFNE 636 Query: 610 NTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARN 669 ++ AL T ++G N + L + + D R++W ++G + ++ Sbjct: 637 AKVKRALLTRLLGFNLKKLIDLQGQSEGLSRYIADLDIIREMWFEKGFLTAWNYALNLFQ 696 Query: 670 IAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 + NL+A + ER + ++ H++E+L + + L W + + P S ++ Sbjct: 697 VWTNLVASQSLDNERVVVNLRHLTEILSQQSEYYQGAQKLYHWYLRQLQSPSGKDSEKER 756 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFIT------------NFRVQEQAFYHDRHSFE 775 +L D H VQ++TIH SKGLE+ +V+L + EQ ++ Sbjct: 757 KLSGD-HGVQLMTIHASKGLEFKVVFLLGADAAFDVNKGNLNFSLSAPEQDNILEQSRVI 815 Query: 776 AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 AV N +++ A AE+ RL YVALTR+ + + Sbjct: 816 AVNHKNLHEQAILQNAARNAAENHRLWYVALTRASHRVYAML----------QDQNAQSD 865 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 S L +G+ L L + + ++ ++ A+ L Sbjct: 866 SGLAFWRGQGDQLFQHALSLVEPPLSQEPPRLV----------EQSNHHQVDMRAQPLPE 915 Query: 896 LPGDNWRVTSYSGLQQ---RGHGIAQDL-----MPRLDVDAAGVASVVEEPTLTPHQ--- 944 TS++ L Q GH + DL P D + E+P P Sbjct: 916 RQFYPRTKTSFTALSQHQLHGHILQDDLVTAYEQPDSAADEIHFTGLEEQPAAVPLDWIR 975 Query: 945 --FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQ 999 FP+G GTFLHS+FE +DF N + W+ L E Sbjct: 976 LNFPKGTVAGTFLHSIFEHIDFQDSSYWNLEIRRRFKNTAPQIWQE-LKEKFEQAFH 1031 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 4/191 (2%) Query: 983 ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 E ++ +W+ +L P+ + +L+QL A+ E FYL +++ + Q+ + + Sbjct: 1173 EDILLNLMHDWVHDILATPI-QVDFALAQLEAKQYLSEFPFYLSLTDAPL--QIRQIHQL 1229 Query: 1043 FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 F + L G IDLV+ RY++ DYKSN+LG D Y+ +A+ M Sbjct: 1230 FLGHDIVMSDFNEAKSARYLTGSIDLVYFDGQRYHIADYKSNFLGPDQQHYSAEAIQQNM 1289 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 Y LQ LY +ALHRYL + Y H GG YL+LRG++ + QQG Y +P+ Sbjct: 1290 SQSSYWLQAALYLVALHRYLSANMQGYSITQHLGGATYLYLRGMNGQV-QQGAYHWQPSL 1348 Query: 1163 GLIALMDEMFA 1173 I +D++ Sbjct: 1349 EFIEKLDQILG 1359 >UniRef50_Q4FSN0 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Psychrobacter RepID=Q4FSN0_PSYA2 Length = 1495 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 281/1307 (21%), Positives = 500/1307 (38%), Gaps = 230/1307 (17%) Query: 80 IHELRIACLRETTDNPLYERLLEEIDDK------AQAAQWLLLAERQMDEAAVFTIHGFC 133 + + + A L ++P+ L+ + D +A + L +D+ V T+ Sbjct: 203 VEQAKYARLDGIMEDPINLHLVGYLLDHVHSYPMTEAIRRTALVLTTLDKLFVGTLDSLA 262 Query: 134 QRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRR---HCYPLPREIAQVVFETWK 188 Q+ L + E+G +IED S + D R+ Y ++ ++ + K Sbjct: 263 QKWLIEYSSETGHQQGMAIIEDSSIEQVTDSIIHDELRQFQSRLYHEQPKLYALMDQQGK 322 Query: 189 -----GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID------------- 230 + + ++ IK D R A++D Sbjct: 323 LTAVSDHKKYVTRSLNFISAPIDEIKLEQGFDFVSYERLLNEFAQLDLVDIQPYLNPDYR 382 Query: 231 ----------TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA--WAEEETN 278 KQ DA+ E+ I + + + K + + + E+ Sbjct: 383 KSQGFNGASNLFKQF--DAIIEVHQKIAEYKLAFTSYLNERENKILTSLQDSRYPNEDGK 440 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRET 338 ++ EK + F E T + L + D L L + + + +R+ Sbjct: 441 IKNFNKNKEKEHETFFELET----ISKLMALLDMADGLNQHILLVSANLNRHIVLAVRDR 496 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 + RGE F ++RL+ AL GE LA IR +PVA+IDE QD + +Q + Sbjct: 497 LPIILEERGETTFSLQMARLNQALTGRQGEKLARYIRHHYPVALIDESQDINGEQAIMIE 556 Query: 399 RIWHHQPETA-----------------LLLIGDPKQAIYAFRGADI--FTYMKARSEVHA 439 I+ + + LLL+GDPKQAIY FRG D+ + YMKA+ E + Sbjct: 557 SIYLPKSKRKQLANDKPLSTNKVSHEFLLLVGDPKQAIYGFRGGDVANYNYMKAQFEKSS 616 Query: 440 HYTLDTNWRSAPGMVNSVNKLF-------SQTDDAFMFREIPFIPVKSAGKNQALRFVFK 492 +TLD N RS G+++++N F ++ A + I + +K+ L + Sbjct: 617 LWTLDINRRSNAGVIDALNCWFGMPTVTTAENKLAQLGSSIYYQHIKADKPENQLSWFND 676 Query: 493 GETQPA-MKMWLMEGESCGV------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD 545 Q + + ++ + V + + ++ A I L +GQ + Sbjct: 677 LTVQNSTLVTEILSAQPVSVLHLPYDKELEYDEHEITARHIATLLGSGQTLK-------- 728 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 +P++ SDI VL R++++ +V D L L +P++ S+ S+FET+ A+++ LL A++ Sbjct: 729 GKPIQPSDIGVLARTKKDLKRVEDELLKLNVPTLTTSDV-SIFETIMAEDVAALLSAMLY 787 Query: 606 PERENTLRSALATSMMGLNALDIETLNND---------------------------EHAW 638 P R + + L + + GL+ ++ + D + ++ Sbjct: 788 PYRHDMINRVLTSHLYGLSIKAVKAMMTDHESGVTESGDTIISTHSNSTNVKAVDNKKSY 847 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMS-----ARNIAENLLATAGGERRLTDILHISEL 693 + Q W+ G++ L L+ + + + L A G R + D+ H+ ++ Sbjct: 848 QDFITYLKQAAQNWQHFGILSALHYLLDKNPVQPQGVWQALAAHPEGARHIMDLRHMMDV 907 Query: 694 LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 L + G + EH L+ W Q+I ++ ++Q L ++ VQ++TIHKSKGLE+P+V+ Sbjct: 908 LAQYGIGM-GEHELLAWFRQNIEAAPNSDWAKQYPLPTESG-VQLMTIHKSKGLEFPIVY 965 Query: 754 LPFITNFRVQ----------------------EQAFYHDRHSFEAVLDLNAAPESVDLAE 791 + + + + +Q+ + R D+ Sbjct: 966 VLGMGDASRKSGNKEDYGLYLYNAQQNPSALVQQSTSNQRRFSPVKGSATTEGYYTDIET 1025 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG-DKKGDTDVHQSALGRLLQKGEPQDA 850 E E RL YVA TR+ + + + G + K + + + Sbjct: 1026 QEDFDELRRLGYVAFTRASEQLYVVLRDPNSKTGFELKPVFYWFDAPEAKFDLPDRLKGT 1085 Query: 851 AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN----WRVTSY 906 G+ + + N T + + + W TS+ Sbjct: 1086 IGMIRGHKVNEFYNDDTNAVGLAGNTTLATAKPITEAIEYAAFSEVMKTDYFYGWAKTSF 1145 Query: 907 SGLQQRGHGIAQDLM-------PRLDVD--------------AAGVASVVEEPTLTPHQF 945 + L ++ Q L LD+D ++ F Sbjct: 1146 TALARQLDESTQALAVVDERMDDALDIDITESIVSFSSNQSLEPVSDLSLKSEDDIRFTF 1205 Query: 946 PRGASPGTFLHSLFEDLDFTQPVDPNWVREK----------------------------- 976 +GA+ GTFLH +FE +DF+ + V ++ Sbjct: 1206 VKGANAGTFLHEIFEKIDFSNKSQWSQVIDRAVSSYQLPLVYSSAEQQSRLLQAKKKEDS 1265 Query: 977 --LELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 ++L ++ L WI VLQAPL + L + A + E+EF + +SE A Sbjct: 1266 RPVDLNSIDATKHEALIGWIEEVLQAPLLASNQPLQSIHAEQRFAELEFNMGLSESFKAQ 1325 Query: 1035 QLDTLIRQFDPLSA----GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDS 1090 ++ L +Q+ P A P + L+G IDLV+ H G+YY++DYKSN+LG Sbjct: 1326 DINRLFQQYLPNEADKHVNLVPQNKTHLYRYLRGEIDLVYEHAGKYYVVDYKSNYLGNSL 1385 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY--DYEHHFGGVIYLFLRGV-- 1146 Y + + AM Y LQ +Y +ALHR+L RI+DY + + + G V Y+FLRGV Sbjct: 1386 IDYDESTLKQAMSKAGYWLQAAIYQVALHRFLAMRISDYSGNEDKYLGAVEYVFLRGVYD 1445 Query: 1147 -----------DKEHPQQ---------GIYTTRPNAGLIALMDEMFA 1173 D P G+ T I +D +F Sbjct: 1446 SDSQAAADVSQDVNKPDNSLSMHNERYGLVTWDIPIEFIKALDALFG 1492 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 9/85 (10%) Query: 1 MSDVAET-LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 MS+ E + + + L G+ LIEASAGTGKT+T+ + LRLL+ E++ Sbjct: 47 MSEQKENVIPAVDVALTGQHLIEASAGTGKTWTLTGIVLRLLI--------EARRAPEQI 98 Query: 60 LVVTFTEAATAELRGRIRSNIHELR 84 + TFT AA AE+R RI + + Sbjct: 99 IATTFTRAAAAEMRQRIHDRLVDFY 123 >UniRef50_Q8ERW5 ATP-dependent helicase/nuclease subunit A n=1 Tax=Oceanobacillus iheyensis RepID=ADDA_OCEIH Length = 1243 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 235/1272 (18%), Positives = 468/1272 (36%), Gaps = 218/1272 (17%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + ++ LL A P ++ LLVVTFT AA E+R R+ + Sbjct: 20 LVAAAAGSGKTAVLVERIIQKLL------AEHNPTNIDALLVVTFTNAAAQEMRNRVGAA 73 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + A ++ L + A++ T+H FC ++ Sbjct: 74 LEQALAA---------------------NPSSIHLKKQLSLLQRASISTLHSFCLDIVKK 112 Query: 140 NAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETW---------KG 189 NA+ + ++ +D E L Q D Y FE Sbjct: 113 NAYILDIDPSFRIADDMEMDLLKQEVLDDLLEEWYGDSNPNQDSFFEVVNRFTSDRSDAE 172 Query: 190 PQALLRDI----------NRYLQGEAPVIKAPPPDDETLASR----HAQIVARIDTVKQQ 235 + L+R + N++L P E ++ ++D V Q+ Sbjct: 173 MEELIRSLHTFAMQSPWPNQWLDKLVQTYNIPEEWTEEELPWMNVLRDEVSRQLDAVSQE 232 Query: 236 WRDAVGELDALIESSGIDRRKFN--RSNQAKWIDKISAWAEEETNSYQLP---------- 283 D + + + ++ + + + +W + + Q+ Sbjct: 233 I-DIAYSITQEADGPYHYAKTIEEEKAIIQEALKNMESWKYLQQSMLQVKFGKLSGKKVD 291 Query: 284 -ESLEKFSQRFLEDRTKAGGETPRHP-LFEAIDQLLAEPLSIRDLV--ITRALAEIRETV 339 + +K + L D K + + +D + + + ++ + + + +++ Sbjct: 292 CDEEKKTKVKKLRDSYKKRFQKMQEVWFARNLDAHVYDMRVLAPVIKHLVELVKQFQDSF 351 Query: 340 AREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQDTDPQ 392 A+ K+ + + F D+ L ES +A ++ +F ++DE+QDT+ Sbjct: 352 AKVKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQLQRQFTEVLVDEYQDTNMV 411 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HYTLDTN 446 Q I + I Q + ++GD KQ+IY FR A+ ++ L N Sbjct: 412 QETILQLISDRQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKYKRFSNSDDPSIRIDLARN 471 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS ++ N +F Q D + EI + + E +P + + Sbjct: 472 FRSRENVLLGANYIFRQLFDEDLG-EISYDDAAELIYGNKMYDDHPLEAKPELLLIDNNS 530 Query: 507 ESCGVGDYQST---------MAQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDI 554 E D + T A+ A QI++W+ + + + R ++ DI Sbjct: 531 EDVEQSDNEETVEDLEKAQIEARAYAKQIKNWIGTPEDEIPMQVVDKATGKQRDLQYKDI 590 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 +L+RS A+ + D L IP+ Y FE +E + ML L+ + P ++ L S Sbjct: 591 VILMRSMTWASTIADELQQQGIPT-YADLSTGYFEAIEIKVMLSFLKVIDNPRQDIPLAS 649 Query: 615 ALATSMMGLNALDIETLN---NDEHAWDVV--------------------VEEFDGYRQI 651 L + ++GL + ++ ++ V +E + +RQ Sbjct: 650 ILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSDTVKSLIRFMEMLNDFRQS 709 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRW 710 R+ + ++ + + + A GG++R ++ + + + T + +R+ Sbjct: 710 ARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRALYDRARGYESTSFRGLYRFLRF 769 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQA 766 + + +E L + +V+I+TIHKSKGLE+P+V L + + E+ Sbjct: 770 IER--MEERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPIVILGGMNKEFNQRDLSEKY 827 Query: 767 FYHDRHSF---------EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL-G 816 H F + L+E++R+LYVALTR+ + G Sbjct: 828 LLHKDLGFASKYIDPVKRIQYPTLYYHAVRQAKFRDMLSEEIRVLYVALTRAKEKLLMVG 887 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL-------RTCIEALCDDDIAWQT 869 P + ++ +K H S + + E + E + ++I Q Sbjct: 888 TVPSIEKKLEKWQRIVDHPSWVLPAYFRMESKTYLDWVGPALLRHVGSEKIRTENIGNQV 947 Query: 870 AQTGDNQP--WQVN-DVSTAELNAKTLQRLPGDNW--RVTSYSGLQQRGHGIAQDLMPRL 924 ++ + P WQ+ + + ++ K DN +V ++ ++ G+ D+ RL Sbjct: 948 LESINQDPSDWQITMNHALDYMDMKDSSMDNDDNLKEKVFNWESVETEQEGLKNDVDARL 1007 Query: 925 DVDAAGVASVV---------------------EEPTLTPHQFPRGASP------------ 951 + A + V ++ L P P G P Sbjct: 1008 SYEYAYKQATVFRAKQSVTELKRQQEVKDDYSDQQILPPSHGPIGKRPNFLQKKLKLSPA 1067 Query: 952 --GTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSL 1009 GT LH++ + L T + + E +E VL E +T + +N Sbjct: 1068 EKGTALHTVMQHLPMTHVLSEPEIEENIEK--------MVLEEKLTRMEADSINI----- 1114 Query: 1010 SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF-------MQVRGML 1062 + VE F+ I+ +I+ + + R+ P S P E + ++ Sbjct: 1115 -------RAVERFFHTEIASKIISG--NDMHREV-PFSIMLPASEVYANWKDQSNEKVLI 1164 Query: 1063 KGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 +G ID + + + + +LDYK++++ ++ ++ +Q + HRY Q LY A+ + Sbjct: 1165 QGVIDCLLQADTGWIILDYKTDFIEDNPTSQKEQELI-----HRYQTQMTLYRRAIEQIW 1219 Query: 1123 RHRIAD-YDYEH 1133 + + Y Y Sbjct: 1220 KQPVEQTYLYFF 1231 >UniRef50_B9EAN8 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EAN8_MACCJ Length = 1148 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 237/1223 (19%), Positives = 452/1223 (36%), Gaps = 197/1223 (16%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + +R ++ + + V+ELLVVTFT A+ E++ RI + Sbjct: 18 TLVAAAAGSGKTAVLVERIIRKIID--------QSVNVDELLVVTFTNASAKEMKHRIFN 69 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + E + A + L ++ +A + T+H FC ++ Sbjct: 70 RLQEAL---------------------NDAPHNEHLKTQLIKLHQADISTLHRFCLNLIE 108 Query: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA---- 192 + + + +E +LL QA D + ++ + Sbjct: 109 RFYYTIDLDPTFRTASEEERALLLMQAIDDVLETIYEAAHPDDMTLLLHLSSDRKDDYVR 168 Query: 193 --LLRDINRYLQGEAP-----VIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 L++ N + P I A D T +S I +I+ Q + + Sbjct: 169 KTLVKLYNFAIANSHPSRWLEAIAASYRDVSTDSSYFLSINQQINDELHQAVQLIKRAED 228 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP-------------------ESL 286 L S +D N K +++ + E + + L Sbjct: 229 LCISPALDT---NLEYLQKIREQLEQFPESLEEKFSFIQSIQFGRKPNMKKSDDPYDKEL 285 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE--PLSIRDLVITRALAEIRETVAREKR 344 + + +L K + L+ I++L + +S+ +TR + + ++ KR Sbjct: 286 NEGIKEYLTQSKKLVSNIQENYLYAPIEELADDIRAMSVEVERLTRMTQMVIDRFSQLKR 345 Query: 345 RRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 R + F D L ++ +A ++ ++ ++DE+QDT+ Q I + I Sbjct: 346 ERKLIDFSDYEHFALQILIHNDEPTEIAHMLKAQYKEILVDEYQDTNRVQESIIQAI--- 402 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-----AHYTLDTNWRSAPGMVNSVN 458 + + + ++GD KQ+IY FR A+ +M+ S L N+RS ++N+ N Sbjct: 403 KRDDNMFMVGDVKQSIYKFRQAEPELFMEKYSHFKSGGPGKVIDLSQNFRSRRAVINNTN 462 Query: 459 KLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK-GETQPAMKMWLMEGESCGVGDYQST 517 ++FS+ D + I +Q L + + ++ L+ E D + Sbjct: 463 EIFSKIMDEKLGDII-------YDDDQMLYYGAPYDDMSQHTELHLLNKEEL--NDIEYF 513 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 + A I + + E + + R + DI++L R AA+ + +IP Sbjct: 514 ASHHIADVIEQIIA---QEEVYDVKTGEYRAAQYKDIAILERGFSSAAEHMKVMKDRKIP 570 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637 ++++++ F+T E +L LL+ V P ++ L L + + +A ++ L +D Sbjct: 571 F-HVNSKEGYFQTDEINTILSLLRVVDNPLQDIPLAGLLRSIIYQFDAHELTALRSDCSV 629 Query: 638 W---------------------DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 + V+ + YR+ RK V ++ + + + E Sbjct: 630 FLYHNLLSYSVNGEDAQLKYKVKKVLADISDYREQSRKVSVKDLIDYIYNDTLLIEKFTL 689 Query: 677 TAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GG +R ++ + + ++ + + +R++ +ILE + + + + ++ Sbjct: 690 LPGGHQRQANLEGLLQKAEQFEQSSYRGIYQFLRFVD-NILEAGKDFGEMNI-VSDEANV 747 Query: 736 VQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVLDLNAAPESVDLA- 790 V+++T+H SKGLE+P V I +EQ + R A + LA Sbjct: 748 VRMMTVHASKGLEFPFVIYNNIDRQFNLMETKEQLLLNQRLGLSITFYDKMAHTTYPLAI 807 Query: 791 --------EAERLAEDLRLLYVALTRSVWHCSL--------GVAPLVRRRGDKKGDTDVH 834 E+++E+LRL+YVALTR+ L + DKK D Sbjct: 808 NQLFKTKIRNEQVSEELRLMYVALTRAREKLVLVGNVKDDKVIEKFQNVDVDKKMDDYYR 867 Query: 835 QSALGRLLQKGEPQDAAGLRTCIEALCDDDI---AWQTAQTGDNQPWQVNDVSTAELNAK 891 SAL L AL DD I +T T +N+ + + + AE Sbjct: 868 LSALSPLQFIAPI-----------ALHDDSIDVRMIRTLNTLENKATETAESTKAE-GVT 915 Query: 892 TLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVA-----------SVVEEPTL 940 LQ L + S + L + ++ + D A + + P Sbjct: 916 WLQELKDYRYPYLSENLLPTK--ESVSEIKKAQETDDEATAWTYINQYRLGKATYDRPKF 973 Query: 941 TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 + A GT +H + + L VD ++ L + ++ I + + Sbjct: 974 MSEEKKTAAEYGTLMHKVMQHLPRLNNVDSEDIKHFL---------DDLVNRRIISDEER 1024 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD-----PLSAGCPPLEF 1055 PL E I + D L+ + P G + Sbjct: 1025 PL---------------INEK----HIYQFTKTVLYDRLVHADEVYFELPFVIGKQYITQ 1065 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 +++G ID VF++EG YY +DYK++ + T++ +A RY++Q Y Sbjct: 1066 SHPDQLVQGMIDCVFKYEGHYYFIDYKTDQVISRLGRTTEETLAE--LKLRYEVQMNYYK 1123 Query: 1116 LALHRYLRHRIADYDYEHHFGGV 1138 L L + Y Y G V Sbjct: 1124 KTLEVILDEPVTGYLYFFEAGTV 1146 >UniRef50_A6LPC4 ATP-dependent helicase/nuclease subunit A n=4 Tax=Clostridium RepID=ADDA_CLOB8 Length = 1245 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 230/1279 (17%), Positives = 463/1279 (36%), Gaps = 217/1279 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + +R++ P+ +++LLVVTFT AA AE+R R Sbjct: 18 NCNLLVAAAAGSGKTAVLVERIIRIITNE------ENPVDIDKLLVVTFTNAAAAEMRER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I +E +NP ++ L ++ A + T+H FC Sbjct: 72 IADAIS-------KELENNP--------------RSKNLQRQLTLLNRANITTMHSFCLD 110 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQV--VFETWKGPQ 191 ++ N + ++ + L++ + + + + +F ++K Sbjct: 111 VIKNNYHRIDLDPSFRIGDQTEGILIKSEVIEELFEDKYEEEDIGFTNLVEIFSSYKNDN 170 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV-KQQWRDAVGE-------- 242 L + P P+ + S A + ++D + + W + + Sbjct: 171 NLKNLVLDLYNFTMSG---PWPEKWLINSAEAFNIKQLDELDRTNWVRVLAQSVKIELDG 227 Query: 243 ----LDALIE--------SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ--LPESLEK 288 L+ IE +D S K + E NS L+ Sbjct: 228 YVKMLEKAIEVTSKTDGLEPYMDNLLMELSYIKKAYESTDNGLEAMFNSLSSVQFSRLKS 287 Query: 289 FSQRFLEDRT-KAGGETPRHPLFEAIDQLLAEPLSIRDLV--------------ITRALA 333 + + D + + R + + I +LL S+ + + Sbjct: 288 IKKDKVSDELSQNTVKKIRDDVKKGISELLNNAYSVNPQQMLRNIQGSYPYIKKLIELVL 347 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGE------VLAAAIRTRFPVAMIDEFQ 387 E ++ KR R L F+D+ L E +A + F ++DE+Q Sbjct: 348 EFSARFSKRKRERNILDFNDLEHLCLKILSDYDDENNIIPSSIAMNFKEYFDEVLVDEYQ 407 Query: 388 DTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AH 440 D++ Q I + + + ++GD KQ+IY FR A +++ + Sbjct: 408 DSNNVQETIINLVSRKNDDNPNVFMVGDVKQSIYRFRQAKPELFIEKYNTYDSSNGVNRK 467 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPAM 499 L N+RS +++ VN +F + + E + G + + Sbjct: 468 IQLYKNFRSRREIIDGVNYIFKEVMSEVVGELEYTDEEALNLGADFKENKFKDTIVGGPI 527 Query: 500 KMWLME--GESCGVGDYQSTMA--------QVCAAQIRDWL---QAGQRGEALLMNGDDA 546 ++ +++ V D + ++ A +I++ + + Q + L + Sbjct: 528 EVNIIDKSHNETVVEDNEEQEEINNVILEGRIVAKRIKELMSKSEDEQIFKVLDKESGEY 587 Query: 547 RPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 RP++ DI +L+R ++ + + D L+ IP VY FE++E + ++ LL+ V Sbjct: 588 RPLKYRDIVILLRATKNWSEPLLDELSAEGIP-VYADTGSGYFESIEIRTIISLLKVVDN 646 Query: 606 PERENTLRSALATSMMGLNALDIETLNN----------------------DEHAWDVVVE 643 P ++ + S + + +MG +A +I + +E DV++ Sbjct: 647 PMQDIPVISVMRSPIMGFSAEEISDIRLVKKDNYFYENIKYISEEAYNSINESYSDVLIA 706 Query: 644 E---FDGYRQIWRKRGVM----PMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 + F WR + + + L + A G R ++ + + ++ Sbjct: 707 KCKYFINSVDKWRNKSIYMAIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQ 766 Query: 697 -AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 T + + ++++ I S L ++ +V+I++IHKSKGLE+P+V+L Sbjct: 767 FEKTSFKGLFNFINFINKLI--KSSGDMGSAQVLGENEDVVRIMSIHKSKGLEFPVVFLC 824 Query: 756 FITN----FRVQEQAFYHDRHSFEA-VLDLNAAPESVDLAEA--------ERLAEDLRLL 802 + + + YHD +D+ LA+ E L+E++R+L Sbjct: 825 GLGKNFNLMDLNKSILYHDELGLGPDFIDIGKRFSIGTLAKESIKKKMKFETLSEEMRIL 884 Query: 803 YVALTRSVWHCSL--GVAPLVRRRGDKKGDT--DVHQSALGRLLQKGEPQDAAGLRTCIE 858 YVA TR+ + V L + G D ++ + +L+ D + C Sbjct: 885 YVACTRAKEKLIMTGTVGNLEKSAEKWLGSASLDYNRISPSEVLKGKSYLDWICMSLCQH 944 Query: 859 A----LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT---------------LQRLPGD 899 L + DN W+V+ + +L KT + P D Sbjct: 945 RDGSVLSESFGTENLILKDDNSRWKVSFWNKGDLIDKTKTEVLEQGEGYELTIINNKPYD 1004 Query: 900 NW------RVTSY-----SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF--- 945 N+ ++ SY + + + DL R + + E +F Sbjct: 1005 NYLYEEVDKILSYKYPFKASTTIKSNISVSDLKRRHAEEDYDTEQLYREKVKVVPKFLQE 1064 Query: 946 PRGASP---GTFLHSLFEDLDFTQPVDPNWVREKLELGG-----FESQWEPVLTEWITAV 997 +G +P GT +H + + +DF + ++E+L + + + I + Sbjct: 1065 KKGLTPSEKGTAVHFVMKKIDFNRVSSTEEIKEQLHELFEKEFLLSEELKVINPTKILSF 1124 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 ++ L + + L+ + E+ FY IS + LD + + + Sbjct: 1125 FRSDLGKKILDLNCRGEKIY-REIPFYTEISSLEVDKTLDNIYKD-------------EK 1170 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 +R L+G ID F ++G L+DYK++++ E +Y Q Y+ A Sbjct: 1171 IR--LQGIIDCFFEYKGDIILIDYKTDYIMEGHED---------EFKEKYRKQLDYYSDA 1219 Query: 1118 LHRYLRHRIA-DYDYEHHF 1135 + + ++ Y Y + Sbjct: 1220 IFKLTGKKVKYKYLYSFYL 1238 >UniRef50_B2S0X7 Exodeoxyribonuclease V beta chain n=5 Tax=Borrelia RepID=B2S0X7_BORHD Length = 1157 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 264/1209 (21%), Positives = 475/1209 (39%), Gaps = 159/1209 (13%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 LIEASAGTGKT+T+ LL+ + + E+LV+TFT+ AT E+ RI + Sbjct: 26 LIEASAGTGKTYTLENTITNLLIN--------KMYSPSEILVLTFTKKATEEMHIRILKS 77 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I ++ + L Q ++ + TI+ F LN Sbjct: 78 IENAYQ---------------------NSKTDKSLKTIYEQSNKIFISTINKFALYALNN 116 Query: 140 NAFESGMLFEQQLIEDESLLRYQACADFWRR-HCYPLPREIAQVVFETWKGPQALLRDIN 198 E+ + + E+ + + +F R+ EI FE +K +D+ Sbjct: 117 FQIETENFSKYSVKENFTSEIDEIVYEFLRKSDSLKKEFEIKDDEFEIFKSKFKNTKDMT 176 Query: 199 RYLQGEAPVIKAPPPDD-ETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKF 257 +Y++ K D + Q++ D + ++ ++AL E + ++R F Sbjct: 177 QYIRQGYKRDKTQELGDWIETQTIFNQMLTNKDKLIDKYNLI---VEALNEMTMEEKRTF 233 Query: 258 -NRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPL--FEAID 314 N+ NQ I +I E++ + KF + +E K L A+ Sbjct: 234 LNKHNQGIKISEIKYSHEKDIVKITDILTNNKFFCKIIESNLKKNVTLLPKELKIQTALR 293 Query: 315 QL-------LAEPLSIRDLVITRALAEIRETVAREKR----RRGELGFDDMLSRLDSALR 363 +L + ++R + + +I + + RE + ++ L L Sbjct: 294 ELSHETNTDKEDKNTLRRFINLKVEYKILKYIERELATTINATNTIDQKQIMLNLKKHLE 353 Query: 364 SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR 423 S L +I+ R+ + +IDE QD D Q IF + L+ I DPKQ IY FR Sbjct: 354 SRDN-RLLNSIKNRYKIILIDEAQDLDLIQIEIFELL--SSCGIKLVFIADPKQIIYTFR 410 Query: 424 GADIFTY---MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI---PFIP 477 ADI Y +K + + A TL TN+RS ++ +N +F + EI F Sbjct: 411 NADISFYNQNIKDKIKDDARITLLTNYRSNKKLIEPLNIMFDNIYNKARTDEIEQIKFTK 470 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 K+ KN + G+ A+ + E + + Q A I+ L G+ Sbjct: 471 SKTDPKNDENKIFVNGQEIEAINIIETEED--------KNVLQKTALTIKYLLTNGK--- 519 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEML 597 + + + R ++ SDI VL R+ +E + L ++ + L+ +S F+T E + Sbjct: 520 --IYDNNKLRQIKESDIKVLCRTSKEVDFIDRELKNQDVKTNKLA--ESFFKTKEFNLIF 575 Query: 598 WLLQAVMTPERENTLRSALATSMMGL------NALD--------------IETLNNDEHA 637 +L++ + + TL L + ++ L + L+ I L N E Sbjct: 576 YLIKCLDRKQNFQTLNYILTSKIINLPWELYLSLLEENGIKHIEEAIIDIIYLLENQEIT 635 Query: 638 WDVVVEEFDGYRQIWRKRG---VMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 ++E + +W ++ +L G L + + + Sbjct: 636 LIEAIDEIISKKDLWLNLAKNFRNTTFTEFAQSKKSYREILINEGKFEELKNYETSLDFI 695 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 + + ++ +L+ L IL D ++ D ++I+TIHKSKGL +V+L Sbjct: 696 SKIYYEDKNIESLISTLEDLILNKDIEQDEDKIT-TGDNQAIEILTIHKSKGLSINIVFL 754 Query: 755 PFI----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 N + FY + D E+ A+ + L E+ + YV TR+ Sbjct: 755 IGDIQNNDNLLKKSDTFYKFYSKNKIEYDFLKLKENQQFAKNKILNEEQNIFYVGTTRAR 814 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 870 + + + + ++L+ E + IE + + + Sbjct: 815 FALFI----------------INQGATINKMLELAEIKT-------IEKINLNFNVYNLI 851 Query: 871 QTGDNQPWQVNDVSTAEL-NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAA 929 +T +ND +L K + + SY+ L + + + Sbjct: 852 KTNQFNKLDINDNKEIKLIPPKPINKYLFRKEHTHSYTSLASIYKSNHHE-----NPETR 906 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---------NWVREKLELG 980 + + T + PRG G LH++ +D++F+ D +++K+E Sbjct: 907 NDETYDNDATCSGETLPRGKDIGNILHAIMQDINFSDAKDSFNNFQKINIALIQKKIEHF 966 Query: 981 GFE---SQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 + + + +L + I +L + G L + K EMEF + I+ + + Sbjct: 967 NSKLNTPKLQEMLIKMIYNILNTKIRFIGARLCDIQELQK--EMEFLIKINTKIYEQK-- 1022 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 +L + + L+ + G +KG IDL+F+ + Y+LDYK+N+LGE+ Y Sbjct: 1023 SLFKDHN-------KLDLVLNDGYIKGIIDLIFKINNKIYILDYKTNYLGENLKDYNLTN 1075 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK-----EHPQ 1152 + M+ +YDLQY++Y L + + L I +Y+ HFGGVIYLF R K Q Sbjct: 1076 LKKKMKQEQYDLQYKIYALGIKKILFKNIEEYN--KHFGGVIYLFTRAFQKNIKEQSKTQ 1133 Query: 1153 QGIYTTRPN 1161 GIY+T PN Sbjct: 1134 NGIYSTIPN 1142 >UniRef50_Q71X99 ATP-dependent helicase/nuclease subunit A n=17 Tax=Listeria RepID=ADDA_LISMF Length = 1235 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 218/1245 (17%), Positives = 452/1245 (36%), Gaps = 211/1245 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+ + L V+ELL+VTFT A+ AE++ RI Sbjct: 28 NVLVAAAAGSGKTAVLVTRIIEKLINESAN------LNVDELLIVTFTNASAAEMKFRIG 81 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E L + D+ L ++ A++ T+H FC ++ Sbjct: 82 KGLEEA----LAQNPDST-----------------HLKRQVALLNYASISTLHSFCLEII 120 Query: 138 NLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 F++ + +LIE + S++R + + + E + E++ G Sbjct: 121 RKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVESFTG-DRSDA 179 Query: 196 DINRYLQGEAPVIKAPPPDDETLAS---------------------RHAQIVARIDTVKQ 234 +++ + +A P + L I R++ K Sbjct: 180 ELHALISKLYDFSRANPDPNIWLEEMVDFYNTEETTSITELPYFPIIKEDIELRVNQAKN 239 Query: 235 QWRDAVG--------------------ELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 +A+ +++A+ E S + ++ ++ +I Sbjct: 240 YLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWNSWGQLKKAIESIDFKRIPTLKN 299 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 + + E +KF ++ + + L E + ++R + + Sbjct: 300 KSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDL--EKMKPDIKTLSRLVKK 357 Query: 335 IRETVAREKRRRGELGFDDMLSRLDS-ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 E EK++RG L F+D+ L+ +A + +F +IDE+QDT+ Q Sbjct: 358 FAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKEVLIDEYQDTNMVQ 417 Query: 394 YRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDT 445 I R + + E L ++GD KQ+IY FR A+ +M L Sbjct: 418 ETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTYQQDGNGSGIRIDLSQ 477 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS ++++ N +F Q D + I I +A + L F T A ++ L++ Sbjct: 478 NFRSRKEVLDATNFIFHQLMD----KHIAEIDYDAAAEL-TLGASFPETTDMATELLLID 532 Query: 506 GESCGVGDYQST----------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 +S ++ A +I++ + + RP++ DI Sbjct: 533 MKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDN--KFPIFDKKMKQNRPIQYRDIV 590 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +L R+ A + +A+ + +IP Y +N FET E M+ L++ + P ++ L + Sbjct: 591 ILARAMTSAPDMEEAMKVQDIPF-YANNNSGYFETTEVATMIALMKVIDNPYQDIPLAAV 649 Query: 616 LATSMMGLNALDIETLN---NDEHAWDVVV------------------EEFDGYRQIWRK 654 L + ++GLN ++ + + + +D ++ ++ + +R++ + Sbjct: 650 LRSPIIGLNEEELGQVRMAKKNGYFYDALLTYKDTTVSETADKMSDFIQQLNNWRELSIR 709 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQ 713 + ++ + N E + GG++R ++ + + Q T VR++ + Sbjct: 710 ENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVER 769 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF------ 767 LE + L + +V+++TIH SKGLE+P+V + ++ + Sbjct: 770 --LEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVSGLSRKFNMRDIYSKTLLD 827 Query: 768 --YHDRHSFEAVLDLNAAPESVDLA-----EAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 Y ++ + + P + A E +AE++R+LYVALTR+ L Sbjct: 828 KDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMIAEEMRVLYVALTRAEEKLILTATVP 887 Query: 821 VRRRGD-------KKGDTDVHQSALGR------LLQKGEPQD---------------AAG 852 + K+ +T + S + + + Sbjct: 888 DFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWIGNATIRHPNFKELLCEEMIQTLPTD 947 Query: 853 LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS---GL 909 ++ IE + + + W N + K+ + + Y Sbjct: 948 MKLQIEIKTKEMFLTNELEKTETVNWLENIKEHQPIPVKSPYKDEIQRYMNYEYQNEEAT 1007 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASV---------VEEPTLTPHQFPRGASPGTFLHSLFE 960 + R +L + + + + ++ P GT +H+L + Sbjct: 1008 EIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQ 1067 Query: 961 DLDFTQPVDPNWVREKLELG-----GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSAR 1015 + + + L+ E+Q + + + + ++ L +T + L R Sbjct: 1068 AVSLEHQPTKEDLEQLLQTMREKDILTEAQLKAINIKQVLGFFESQLGKTMLQKKDLVKR 1127 Query: 1016 NKQVEMEF--YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 E+ F LP+SE +D R +++G +D + E Sbjct: 1128 ----EVPFSYLLPVSELYEKVDIDE--------------------RVLIQGVVDSMIEEE 1163 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 L+DYK++ + Y+ A + RY +Q +LY A+ Sbjct: 1164 ETITLIDYKTDKI---EGRYSNWEAAEKIMKERYHIQIKLYAKAI 1205 >UniRef50_A1HTK7 UvrD-like DNA helicase, C terminal n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTK7_9FIRM Length = 1246 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 245/1295 (18%), Positives = 448/1295 (34%), Gaps = 246/1295 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + +L P+ V+ LLVVTFT AA AE+R RI Sbjct: 18 NLLVAAAAGSGKTSVLVQRIIDRILDKTA------PVNVDALLVVTFTNAAAAEMRERIA 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + K + ++L +++A++ TIH FCQ ++ Sbjct: 72 QALTAELA---------------------KGERTRYLERQLLLLNQASISTIHSFCQSVV 110 Query: 138 NLNAFESGMLFEQQLI-EDESLLRYQACADFWRRHCYPLPREIAQVVFETWKG------- 189 + + + ++ E E+ L + Y E + + + Sbjct: 111 RQYFYRLDLDPQFRIAGEGETTLLRSDTLEALLAERYEQGDEAFLTLVDHYGDERDDSSL 170 Query: 190 ----------------PQALLRDINRYLQGEAPV---IKAPPPDDETLASRHAQIVARID 230 P+ LR + + + + +A ++ + Sbjct: 171 AGLILRLYEFARSQPWPEHWLRRLADAFRLDGAAGIGAPWEALLADRIALELERLQHKFA 230 Query: 231 TVKQQ-------------WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEET 277 + + D G+LD I ++ R+ + + A + Sbjct: 231 RLAAEAVRPGNPAAYVKTLEDDRGQLDWAIAAARHSWRELGAALNGLKFGTLPAAKGVDA 290 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE 337 + + + +++ + P L + L ++ DLV+ + Sbjct: 291 AVCKRFQERRNTIKSKVKEIAERYFGRPEQELIADMRAQLPLVETLIDLVLA-----FGQ 345 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQDTD 390 K+ +G + F D+ L +++ +A A+R ++ ++DE+QDT+ Sbjct: 346 RFQEAKKAKGLVDFSDLEHYCLQILLADNATPDNIQPSAVALALREKYEEVLVDEYQDTN 405 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTL 443 Q I + ++GD KQ+IY FR A+ +++ + A L Sbjct: 406 AVQETILELVSRPDRPNR-FMVGDVKQSIYRFRLAEPGLFLEKYNRYPAAAGGSERRIDL 464 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS PG++ +VN LFSQ E+ + ++ + +++ L Sbjct: 465 AQNFRSRPGILAAVNFLFSQLMTP-RAAEMGYGAAEALNPGPDYPPCDQLTLAGPVEVHL 523 Query: 504 M--------------------EGESCGVGDYQSTMAQVCAAQ------------IRDWLQ 531 + + ++ GD + +++ AQ R L Sbjct: 524 INQAEAVAAAPAADVVEDEAEQQDADAGGDEPANSSELVTAQELTAFEREAWLIARRLLA 583 Query: 532 AGQRGEALLMNGDD-ARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFE 589 + G + D RP+ DI +L+R+ Q A + D L IP+ + FE Sbjct: 584 LKEAGHVVYDKHDKAYRPLAWRDIVILLRTVQGKAGVLLDVLRQAGIPAYADVDG-GYFE 642 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN--NDEHAWDVV------ 641 E Q ML LL + P ++ L L + ++GL A D+ + D W + Sbjct: 643 ETEVQVMLSLLAVIDNPRQDIHLAGVLRSPLVGLTAGDLAAIRLCKDGDLWTALTAAAGA 702 Query: 642 -------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 +E D +R + R+RGV ++ ++ + + GG R ++ Sbjct: 703 DIAEPLRQKIGVFLERLDRWRSLARRRGVAELIWSIYRETGYYDYIGGMPGGALRQANLR 762 Query: 689 HISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 + + ++ T +R+L + L + + L + +V++++IHKSKGL Sbjct: 763 VLYDRARQFEATNFRGLFRFLRFLER--LRDRGSDMAVARALGEGEDVVRVMSIHKSKGL 820 Query: 748 EYPLVWLPFITNF----RVQEQAFYHDRHSFEA-VLDLNAAPESVDLAE--------AER 794 E+P+V L + QE H V+ + LA E Sbjct: 821 EFPVVVLADLGKQLNLRDTQELVLCHKELGLGPKVIRPDLRDSYPTLARWGIEHKLTLEA 880 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 AE+LR+LYVALTR+ L V++ D+ D + L DA Sbjct: 881 KAEELRILYVALTRAREKLILV--GSVKKLADRCSDWCAMVGWQAQALPDALITDAKNYL 938 Query: 855 TCI-------------EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 + AL D N WQV + +N + + Sbjct: 939 DWLGPAIVRHPGGAPLRALAGCDETPTAKLAALNAAWQVITHAADSINPVAPAQPADNPL 998 Query: 902 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-------------- 947 V L+ G + + RLD A+V + LT + R Sbjct: 999 AV-CLKELKPLPGGDSAWVAARLDWRYPYAAAVGQPAKLTVSEIKRRFALADQDGEQWYP 1057 Query: 948 -----------------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELG-----GFESQ 985 A GT +H++ + L+ + + VR +LE Q Sbjct: 1058 PRLAARPRFIQTAGKLTAAEVGTAMHTVMQHLNLAGDMSASGVRRELERLVAAEILLPEQ 1117 Query: 986 WEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP 1045 V E I A +PL + L + R + E+ F Q P Sbjct: 1118 AAAVDVEAIAAFFTSPLGQ---RLLNAAWRRR--ELAF-----------------CQVLP 1155 Query: 1046 LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 ++ P L ++G +D +F L+DYK++ + + Sbjct: 1156 AASIDPALAGTDETVFIQGVVDCLFAEADGLILIDYKTDQVKDGFE-----------LVE 1204 Query: 1106 RYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVI 1139 RYD+Q +LY A+ LR + + Y Y G ++ Sbjct: 1205 RYDVQLKLYAAAMETILRQPVKEIYLYVFSTGQIV 1239 >UniRef50_C8XGW9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGW9_NAKMY Length = 1139 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 275/996 (27%), Positives = 425/996 (42%), Gaps = 125/996 (12%) Query: 269 ISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI 328 I+A+A + ++ ++R ++D P+ A ++ Sbjct: 176 IAAFARRDLPPVFDRDTALALARRVVDDPQALLAPPDPDPISPANWRIKFGQ-------- 227 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQD 388 +R V KR+R LG+DD+L RL +AL + + +R R+ ++DEFQD Sbjct: 228 -----RVRREVEERKRQRRILGYDDLLGRLATAL-APADAPARERMRRRWSFVLVDEFQD 281 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKAR-SEVHAHYTLDTNW 447 TDP Q++I R + ++LIGDPKQ+IYAFRG D+ TY+ A + A TLD NW Sbjct: 282 TDPVQWQILDRAFSG--HATMVLIGDPKQSIYAFRGGDVPTYLAAAHTAGPARATLDRNW 339 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP-----AMKMW 502 R+ P +V ++ L + EI PV SA L ++ Sbjct: 340 RTDPPLVTALQVLLHELT--LGSPEIVVRPVVSALPGPRLHGAPSAAPLRLRVLRRDQVN 397 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 GE + + +A+ AA + + L AG D +P++A ++V+V + + Sbjct: 398 CGAGELIPIDRARELIARDLAADLAELLGAGATF--------DHKPLQAGHVAVIVGTHK 449 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 +A V+ AL + IP+V ++ SVF+T A + + LL+A+ P R +R+A T+ +G Sbjct: 450 QARTVQTALIRVGIPAV-VAGSSSVFQTEAADQWVTLLEALEQPHRAARVRAAALTAFVG 508 Query: 623 LNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 +A D+ E A D + G+ + RGV +L + + +L GGER Sbjct: 509 WSAADLAA--RGEEATDELSVLISGWAGVLATRGVAALLEVVGVETGLPARVLGRVGGER 566 Query: 683 RLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQ-MRLESDKHLVQIVT 740 LTD+ H+ +LLQ A Q AL WL + + + ++ + RLE+D Q+VT Sbjct: 567 LLTDLRHVGQLLQTAAVQDSLGVAALAEWLRRRRADDRLDVTADRVRRLETDAAACQVVT 626 Query: 741 IHKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHS--FEAVLDLNAAPESVDLAEAER 794 +H SKGL+YP+V+LPF + ++ + D H D D A AE Sbjct: 627 LHASKGLQYPVVYLPFAFDRWYNDEPDVLLLHQDGHRVLDIGGPDTPGRGRRRDQALAEE 686 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 E LR LYV LTR+ AP R + +H+ G G D+ + Sbjct: 687 AGEALRHLYVGLTRAQSQVVTWWAPTKNTR-----TSGLHRVLFGDRDFDGGVPDSVKVP 741 Query: 855 TCIEAL-------CDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPG-DNWRVTSY 906 + A + + +P + EL L R WR SY Sbjct: 742 SDEAARTRLDGWQQRGALVLEQVGVSAARPPAADAPRPDELAVAVLHRDLELQRWRRVSY 801 Query: 907 SGLQQRGHGI-----------------AQDLMPRLDVDAAGVASVVE------------E 937 S L G ++ P L + +A+ Sbjct: 802 SSLSAAGSSGLLIGADAGPVAGDLGVGSEPEHPELADEDGALAAPAGAPDPVADPMAALR 861 Query: 938 PTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVR----EKLELGGFESQWEPVLTE 992 TL+P P GA+ GT +H++FE D P VR E++ GF L Sbjct: 862 ATLSPMADLPVGATFGTLVHAVFETTDPRAADLPAQVRARCAEQVARVGFPLD-PDTLAA 920 Query: 993 WITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIAS---------QLDTLIR 1041 + VL+ L G++L+ L R++ E+EF LP++ A+ L +IR Sbjct: 921 ALVPVLRTSLGPLAGGLTLADLGTRDRLTELEFELPLAGGDRAAGPVPDLVLGDLAPVIR 980 Query: 1042 QFDPLSA---------GCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDSS 1091 + P + P + +RG L G +D V R G RY + DYK+NWLG+ S Sbjct: 981 RHLPAADPLAGYADRLAAPSFAELPLRGYLTGSLDAVLRLPGPRYLVADYKTNWLGDFDS 1040 Query: 1092 -------AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLR 1144 Y AM AAM Y LQ LYT+ALHR+LR R Y H GV+YLF+R Sbjct: 1041 GAPLSLWDYRPAAMDAAMAGSDYPLQAMLYTVALHRFLRWRQPGYHPGRHIAGVLYLFVR 1100 Query: 1145 GVDK------EHPQQGIYTTRPNAGLIALMDEMFAG 1174 G+ + G++ P LI + ++ G Sbjct: 1101 GMAGPDTPEIDGRPCGVFGWAPPVELITAVSDLLDG 1136 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 82/230 (35%), Gaps = 27/230 (11%) Query: 14 PL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 PL +G L+EASAGTGKT I L R + ++LLV+TF AA+ EL Sbjct: 17 PLPRGTTLLEASAGTGKTHAIGDLVTRYIAEGVA--------RPDQLLVITFGRAASQEL 68 Query: 73 RGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQA-----------AQWLLLAERQM 121 R R+R ++ A + + + A L A Sbjct: 69 RERVRDHLVRAERALADPAAARAGADPVHALLAGGPGAHDVDEAQVGRRRDRLRAALAGY 128 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 D + + T H FCQ +L + +L++ L Q D + R Sbjct: 129 DASTILTTHQFCQFVLTGLGVAGDADPDVELVDTLDDLIVQVVDDLY---IAAFARRDLP 185 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 VF+ L R + ++ P PD + A+ + R+ Sbjct: 186 PVFDR----DTALALARRVVDDPQALLAPPDPDPISPANWRIKFGQRVRR 231 >UniRef50_A2BX90 Possible UvrD/REP helicase subunit B n=7 Tax=Prochlorococcus marinus RepID=A2BX90_PROM5 Length = 1212 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 246/1265 (19%), Positives = 501/1265 (39%), Gaps = 154/1265 (12%) Query: 8 LDPLRLPLQGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 ++ ++ L +L+EASAGTGK+FT+A L LR +L + + EE+L+++FT+ Sbjct: 1 MNINQIKLDNNFKLVEASAGTGKSFTLAHLVLRNVL--------EKKIKPEEILLLSFTK 52 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD---- 122 +EL+ +I S ++L+ + L+ D + + LLE D + ++ ++D Sbjct: 53 NTCSELKDKILSRFNKLK-SFLQNHDDTEIDDTLLEWYDKYHKEEKYPENIIFEIDNFVN 111 Query: 123 ---EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 + V T H FC +L + + G + + + + D W L EI Sbjct: 112 AFYKLKVTTFHAFCNNILEEYSIDIGSPQDPFIENNIDNVYQDIVNDLWIEEFLNLDPEI 171 Query: 180 AQVVFETWKGP-------QALLRDINRYLQGEA--PVIKAPPPDDETLASRHAQIVA-RI 229 V + ++ DI + L E + + +++ + + Sbjct: 172 ISAVSQKKISSIYGSKINKSFFVDILKNLDQENICKIQITNKYKNINISNYLKEFLVVEW 231 Query: 230 DTVKQQWRDAVGEL-------DALIESSGIDRRKFNRSNQAKWIDKISAWAE-------- 274 +W + EL LI+ G + ++ + +I+ W E Sbjct: 232 REFCNEWNNEGEELFLQLIELGKLIKGIGGKSQIYSSKPRNNKFTQINEWIEQINLRLDS 291 Query: 275 EETNSYQLPESLEKF------SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI 328 E+ + S E ++ ++ K D++ I + Sbjct: 292 EDISQLLYDISKEDLLFKYFYNKNINKEINKFNLSLDFSRFKLLQDKIYKIKEGIYTEFV 351 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES--GEVLAAAIRTRFPVAMIDEF 386 + + K+ F+D++ ++ S + + I+ +F ++DEF Sbjct: 352 RIFVQLAYLNLITTKKSLSIFNFNDLIKTVEYKYLSSDICNDRSFSDIQNKFKCVLVDEF 411 Query: 387 QDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTN 446 QDTD Q+ I + ++++ LL +GDPKQAIY FRG DI TY+ A+S ++L N Sbjct: 412 QDTDNVQWNIINKFFNNKNH-FLLCVGDPKQAIYKFRGGDIETYLDAKSSAKEVFSLINN 470 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS+ +++ +N L+ + + + + S KN + + F E+ Sbjct: 471 YRSSNDLLDFINNLY---KNGLKESNLNYKKLNSRIKN-CINYKFDFES---------PF 517 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 E + + + Q I D+L Q + + IS+L + + Sbjct: 518 EIVQFSNKEIDIEQFVTEYIVDFLLNNQEIDI-------------NKISILTLYNSQCLE 564 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 +++ L IP + N+ ++F+T + +L ++ +++P + + + ++ Sbjct: 565 LKNKLLKFNIPC-QIKNKQNIFDTEASSLLLLFIETLLSPRLFRNISLLATSKFIEIDVE 623 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 ++ + + + ++ + R++G + ++ L+ I + + Sbjct: 624 ELIDHQISKKIKN-LTDQCILWSLELREKGFLTVVNELI----INYKSSSIKNEVDLYAN 678 Query: 687 ILHISELLQ-EAGTQLESEHALVRWLSQHILEPDS--NASSQQMRLESDKHLVQIVTIHK 743 + +SE+++ E + + + +W + + + + ++ + + TIH Sbjct: 679 LFQLSEIIEIELINNNFNLNKVFKWYQNQLDDSLRICTGEDYMAKDYNLQNGINLSTIHN 738 Query: 744 SKGLEYPLVWLPFIT----NFRVQEQAFY---HDRHSFEAVLDLNAAPESVDLAEAERL- 795 SKGLEY +V P+++ + + + DR + + + + E + L E L Sbjct: 739 SKGLEYDVVVCPYLSIISNKSKKTKGPIWKSNLDRSIYINISNNYSKVEGLKLIEERDLF 798 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 E RL+YVALTRS + + D + ++ + L L+ ++ Sbjct: 799 KESERLIYVALTRSKYKLIIF--------NDIENTDNILNNDLLPNLKNIHIINSKREDK 850 Query: 856 CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHG 915 ++ + + + +N W++N V+T E+ + P D +SYS ++ Sbjct: 851 VVKMNIKEISSKFNLSSLNNNLWKINKVNTKEIR----KSSPEDVISFSSYSSWIRKDKK 906 Query: 916 IAQDLMPRLD-VDAAGVASVVEEPTL--------------TPHQFPRGASPGTFLHSLFE 960 D D + +EE L FP+G GT LH + E Sbjct: 907 TESSSSLYKDYEDNISILKTIEETQLVKSDNNPKYLNLPNPLSDFPKGTVAGTCLHKILE 966 Query: 961 DLDFTQPVDPNWVR---EKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSAR 1015 DF + E+L +S + + E I ++ + L +S+ Sbjct: 967 RFDFQNDTPEKLLELIIEELNFFQIDSSFALKVREGIFRIINVSFGKKLLNKRLIDISSN 1026 Query: 1016 NKQVEMEFYLPISEPLIASQLDT------LIRQFDPLSAGCPPLEFMQV--RGMLKGFID 1067 N E+++ LP+S + + L ++F+ + +Q+ +G G ID Sbjct: 1027 NILKEVKYDLPLSYNGKSINSNDIAKSFLLDQEFEFGKEYATKINDLQILNKGFHSGCID 1086 Query: 1068 LVF-----RHEGRYYLLDYKSNWLGED------SSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 V + +++++D+KSN++ Y + M M H Y LQ LY L Sbjct: 1087 CVIPLGNTLEDSKWWVIDWKSNFISSKENSDCFPKNYHYENMKKEMIKHHYPLQAHLYLL 1146 Query: 1117 ALHRYLRHRIADYDYEHHFGGVIYLFLRGVD---------KEHPQQGIYTTRPNAGLIAL 1167 ALHR L+ R+ +Y H GG IYLFL+G+ + G++ ++ I+ Sbjct: 1147 ALHRLLKWRLKNYQPNLHLGGYIYLFLKGLPDINLFEKSVETDNTPGLFISQAPINRISY 1206 Query: 1168 MDEMF 1172 +D +F Sbjct: 1207 LDNIF 1211 >UniRef50_A0AL18 ATP-dependent helicase/nuclease subunit A n=3 Tax=Listeria RepID=ADDA_LISW6 Length = 1235 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 225/1262 (17%), Positives = 461/1262 (36%), Gaps = 212/1262 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+ G+ L V+ELL+VTFT A+ AE++ RI Sbjct: 28 NILVAAAAGSGKTAVLVTRIIEKLVDETGN------LNVDELLIVTFTNASAAEMKYRIG 81 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 ++ E + NP L +++ ++ A++ T+H FC ++ Sbjct: 82 KSLEEAL-------SQNPDSSHLKKQVA--------------LLNYASISTLHSFCLEII 120 Query: 138 NLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 + FE+ + +LIE + S++R + + + E + E++ G Sbjct: 121 RKHYFEADIDPNFRLIEPIESSMIRDEVLEELLEKEYSIANNEAFFHLVESFTG-DRTDA 179 Query: 196 DINRYLQGEAPVIKAPPPDDETLAS---------------------RHAQIVARIDTVKQ 234 +++ + +A P D L I RI+ K Sbjct: 180 ELHMLISKLYDFSRANPNPDLWLEQMVNFYDTKDINSITELPYFPIIKEDIELRINQAKS 239 Query: 235 QWRDAV--------------------GELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 +A+ +++ L S + + ++ +I + Sbjct: 240 YLLNAIEYASENNGPAPYLETLENDLAQINTLSNISWTNWQDVKLRVESMDFKRIPSLKN 299 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 + + E ++F ++ + + L E + I+ + Sbjct: 300 KSDYDEEYVEETKRFRDAAKKEIKNVLVDWFSREETNYLADL--EKMKPDIKTISELVKN 357 Query: 335 IRETVAREKRRRGELGFDDMLSRLDS-ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 EK+RRG L F+D+ L+++ +A + + +F +IDE+QDT+ Q Sbjct: 358 FANNFFEEKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKEVLIDEYQDTNMVQ 417 Query: 394 YRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDT 445 I + + + + L ++GD KQ+IY FR A+ +M E L Sbjct: 418 ETILLLVTNSEESKGNLFMVGDVKQSIYRFRLAEPTLFMTKYQEYQQNGEGEGIRIDLSQ 477 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS ++++ N +F Q D + + I A + L F A ++ L++ Sbjct: 478 NFRSRKEVLDATNFIFHQLMD----KHVAEIDYDEAAEL-TLGANFPKSNHMATELLLID 532 Query: 506 GESCGVGDYQST----------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 +S A+ A +IR+ + + R ++ DI Sbjct: 533 MKSNENESEDELSPQELQKNQVEARAIATKIREMIDN--KFPIYDKKLQQNRSIQYRDIV 590 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +L R+ A + +A+ + +IP Y SN FET E M+ LL+ + P ++ L + Sbjct: 591 ILSRAMTSAPDMEEAMKVQDIPF-YASNNSGYFETTEVATMIALLKVIDNPYQDIPLAAV 649 Query: 616 LATSMMGLNALDIETLN---NDEHAWDVVVE------------------EFDGYRQIWRK 654 L + ++GLN ++ + + +D ++ + + +R++ + Sbjct: 650 LRSPIVGLNEEELGQIRMAKKKGYFFDALLAYKDITVSAAADRISDFITQLNNWRELSIR 709 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQ 713 + ++ + N E + GG++R ++ + + Q T VR++ + Sbjct: 710 ENLTALIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTAFRGLFRFVRFVER 769 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF------ 767 LE + L + +V+++TIH SKGLE+P+V + ++ + Sbjct: 770 --LEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIISGLSKKFNMRDIYSKTLLD 827 Query: 768 --YHDRHSFEAVLDLNAAPESVDLA-----EAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 Y ++ + + P + A E +AE++R+LYVALTR+ L Sbjct: 828 KDYGFASNYRDIEKMIVYPTIMQQAIKQKKSREMIAEEMRVLYVALTRAEEKLILTATVP 887 Query: 821 VRRRGDKK---------------------------GDTDVHQSALGRLLQKGEPQD-AAG 852 + K G+T + ++ LL + Q Sbjct: 888 DFEKTSKNWLQVSNQKETILPASIRAKAKCYLDWIGNTIIRHTSFKDLLCEERIQTLPTE 947 Query: 853 LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY---SGL 909 ++ IE + + W N + + ++ + + + Y + Sbjct: 948 MKLQIEIKTKEMFLTTELEEHKADNWLENVKAHEPVPVQSAYKDEIERFMNYKYKDVAAT 1007 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASVV---------EEPTLTPHQFPRGASPGTFLHSLFE 960 + R +L + + + + + + P GT +H+L + Sbjct: 1008 EIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQ 1067 Query: 961 DLDFTQPVDPNWVREKLELGG-----FESQWEPVLTEWITAVLQAPLNETGVSLSQLSAR 1015 + T + L+ E+Q + + + I +PL ET + S Sbjct: 1068 AVSLTYKPSEKDLTSLLQSMQEKDILTEAQIKAINIKQIMGFFDSPLGETVLQKSD---- 1123 Query: 1016 NKQVEMEF--YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 + E+ F LP+++ S L+ + +++G +D + E Sbjct: 1124 QVKREVPFSYLLPVAKLYKQSDLEEHV--------------------LIQGVVDSMIEEE 1163 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYE 1132 L+DYK++ + Y A + RY +Q +LY A+ ++++ Y Y Sbjct: 1164 DAITLIDYKTDKI---EGRYANWEAAEKVMKERYQIQIKLYAEAIQAITGKKVSNAYLYF 1220 Query: 1133 HH 1134 Sbjct: 1221 FD 1222 >UniRef50_B7GM51 ATP-dependent helicase/nuclease subunit A n=1 Tax=Anoxybacillus flavithermus WK1 RepID=ADDA_ANOFW Length = 1209 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 229/1251 (18%), Positives = 419/1251 (33%), Gaps = 210/1251 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++ +L RP+ V+ LLVVTFT AA AE+R RI Sbjct: 25 HTLVAAAAGSGKTAVLVERIIQKILHK------ERPIDVDRLLVVTFTNAAAAEMRQRIG 78 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + +K + L + +A++ TIH FC ++ Sbjct: 79 EALERAL---------------------EKEPHSLHLRRQLSLLQKASISTIHSFCLDVI 117 Query: 138 NLNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETW---KGPQAL 193 + G+ ++ ++ E L + + Y E V + + + L Sbjct: 118 RKYYYVIGIDPVFRIADEGEMALLKEEVLETLFEQYYAENDEPFLTVVDRYTSDRTDADL 177 Query: 194 LRDINRYLQGEAPVIKAPP--------------PDDETLASRHAQIVARIDTVKQQWRDA 239 I R + + L H A ++ Sbjct: 178 QTLILRLYEFSRSHPNPSGWLQQIVHMYDVEEGARIDDLPYAHYLFQAVDLALEAAEYRL 237 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 L E G D ++ + I K+ E F+ + + Sbjct: 238 AQALQKTKEPGGPDYLYDTLASDEQVIAKLKEARHESWQQLHEAMKNVSFATAKRKPKDG 297 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLV---------------------ITRALAEIRET 338 A E + + DQ+ E SI + + I + + Sbjct: 298 AYDEQLVEDVKKLRDQVKKEISSITEELFSFQPVTYVRHLHEMKPIVTTIVQMVQRFAHL 357 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDPQ 392 + +K +G + F D+ LR+ S A R +F ++DE+QDT+ Sbjct: 358 LQAKKDEKGIVDFSDLEHYCLRILRAPSLEHELKPSEAALYYRAQFAEVLVDEYQDTNMV 417 Query: 393 QYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HYTLDT 445 Q I R + + T + ++GD KQ+IY FR A+ +++ + L Sbjct: 418 QESILRLVSNDDEATGNMFMVGDVKQSIYGFRLAEPSLFLQKYNRFTKDGDGGLRIDLAK 477 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS +++ N +F Q M + + + + + P +W+ E Sbjct: 478 NFRSRKEILDGTNFIFRQ----LMTETVGDMRYDDDAALRFGAQDYPDKQIPVECVWINE 533 Query: 506 GESCGVGDYQ------STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 + + Q A+ A +I+ L + R + DI +L R Sbjct: 534 AKEESDEEEQEDVTAVQLEARWIAKKIKQLL--AEPFFVYDRRLKGERRLMYRDIVILCR 591 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 S A+ + + +P VY F E ML LL+ + P ++ L + L + Sbjct: 592 SMSSASAMLEEFRKQNVP-VYAELSSGYFSATEVSIMLSLLKVIDNPYQDIPLAAVLRSP 650 Query: 620 MMGLNALDIETLN---NDEHAWDV-------------------VVEEFDGYRQIWRKRGV 657 ++GL+ + + D ++ + +R R++ + Sbjct: 651 IVGLDEEALARIRLAKKDGAFYEALCAFVQEPHDDELHEKMKRWLASLSEWRTAARQKPL 710 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHIL 716 ++ L N + + GG++R ++ + + Q T +R++ + L Sbjct: 711 ADLIWQLYRETNFYDYVGGMPGGKQRQANLRALYDRAKQYEQTSFRGIFRFLRFIER--L 768 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRH- 772 + + L + +V+++TIHKSKGLE+P+V+L N + + D+ Sbjct: 769 KEREDDFGAARSLTEQEDVVRMMTIHKSKGLEFPVVFLAGAAKSFNMQDLRSDYVLDKDF 828 Query: 773 ---------SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRR 823 ++ A A + + LAE++R+LYVALTR+ + Sbjct: 829 GLGMRFVHPTWRASYPTVAQLAIKKKMKWQLLAEEMRILYVALTRAKEKLYIVCTAKDME 888 Query: 824 RGDKKGDTDVHQS---ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 880 KK + S +++K + A A I D W + Sbjct: 889 AKKKKWQEVAYTSTWELPAYVIEKAK--SYADWIGYALARHQQGICSSATVLHDPSLWDI 946 Query: 881 NDVSTAELNAKTLQRLPGDN--------------------------WRVTSYSGLQQRGH 914 + V EL + Q + W T R Sbjct: 947 HIVPAHELEQEDAQANEHRDIVEAIQQLQPVAIKSEYEEEVNRRLFWTYTHAPATVLRAK 1006 Query: 915 GIAQDLMPRLDV-----DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD 969 +L + D+ + +VE P + A GT +H + + +D T+ V Sbjct: 1007 QSVSELKRQRDIYGGHAEQPFRKELVERPRFLQAKMMTPAERGTMMHLVMQHVDVTKEVT 1066 Query: 970 PNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 + VRE++ E Q + E I A P+ + ++L E+ FY Sbjct: 1067 VDAVREQIARMVNGEWLTEEQATVIDVESIVAFFNTPIGKRMQRATRLE-----REVPFY 1121 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 L +E V +++G ID VF E L+DYK++ Sbjct: 1122 L------------------------AHEMEGETV--VVQGVIDCVFEDEHGLVLIDYKTD 1155 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHH 1134 + + RY Q LY A+ + + + Y Y Sbjct: 1156 RVSWMNDP-------KQQLKRRYKGQLALYREAIEAIWKREVTETYVYAFD 1199 >UniRef50_Q1WRS0 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus RepID=ADDA_LACS1 Length = 1248 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 225/1287 (17%), Positives = 459/1287 (35%), Gaps = 253/1287 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + + ++++ELLVVTFTEAA E++ RI+ Sbjct: 21 NILVAASAGSGKTRVLVERVI---------NKIKQGVSIDELLVVTFTEAAAKEMKERIQ 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + D + + L +++ A + T+H FC +++ Sbjct: 72 IALRKELSTA------------------DSEEEKRRYLTQLSKLNVANISTLHAFCLQII 113 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYP-----------------LPRE 178 + + +++ +++ L + D R Y Sbjct: 114 KQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVVNFSSDRNDDG 173 Query: 179 IAQVVFETWK------GPQALLRDI-NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 ++++V +T++ P L ++ + Y G+ P++++ ++ + QI D Sbjct: 174 LSELVMKTYQFANANPNPDEWLNNLVSEYDLGDQPLMESNFYQNKIKPNVLDQIQLAKDN 233 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF-- 289 +KQ +A G+++ ID++ + L +L+ F Sbjct: 234 LKQGMDEA--------NKLGLEKLYQTFEQDCATIDELQDFVVGCKEWNNLKTTLQNFKF 285 Query: 290 ----SQRFLEDRTKAGGETPRHPLFE----AIDQLLAEPLSIRD--------------LV 327 S R L+D K E L + I+ L + ++ + Sbjct: 286 KRAKSDRGLDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVET 345 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE--SGEVLAAAIRTRFPVAMIDE 385 ++ + E ++EKRRR L F D+ L ++ G + ++ +F M+DE Sbjct: 346 LSEVVKEFGAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDE 405 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HA 439 +QDT+ Q I I H P + ++GD KQ+IY FR AD ++K Sbjct: 406 YQDTNQLQETILTTIAHKNPG-NMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNDDE 464 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQT-----------DDAFMFREIPFIPVKSAGKNQALR 488 L N+RS + N +FSQ +DA + + P ++ K + L Sbjct: 465 RIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKAEVLV 524 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP 548 + + +Q + + E + + + A +I++ ++ G++ RP Sbjct: 525 YESEDSSQESDDEPV--NEDFSIDNKAQGQIVMTAKRIKELVENGEK--IYDKKQGTIRP 580 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 + DI++L +R+ + + L +P +++ + + F+T E + M+ LQ + P + Sbjct: 581 IEYRDIAILAPTRKNNLILTEEFKRLGVP-IFVPDAQNYFQTTELKIMMSFLQIIDNPYQ 639 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWD----------------------------- 639 + L + L + ++GL ++ L ++ D Sbjct: 640 DIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLYEKIA 699 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 + +++ +R + ++ + ++ + + + GG +R ++ + E E Sbjct: 700 IFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAAEYEE 759 Query: 700 -QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL---- 754 + VR++++ + + + S ++ D V ++TIH SKGLE+P+V+L Sbjct: 760 MSFKGLFQFVRFINK-MQTKNKDLSEATTQVSDD--AVTVMTIHGSKGLEFPVVFLLDAT 816 Query: 755 ----------PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYV 804 P++ N Y D + D + A + AE +RLLYV Sbjct: 817 HKFNVGDLNKPYLLNADDGIGISYLDPDT-RVKTDTLMKVIAGKQALKKLAAEQMRLLYV 875 Query: 805 ALTRSVWHCSL-GVAPLVRRRGDKKGDTDVHQS----------------ALGRLLQKGEP 847 ALTR+ + G K +S +G L + E Sbjct: 876 ALTRAEQQLFIVGSYKDKNEALSKWKKATQSESLVLNAGIRASVRNFMDWIGMCLTRSEI 935 Query: 848 ---------------------------QDAAGLRTCIEALCDDDIAW---QTAQTGDNQP 877 LR L ++ +W Q + + +P Sbjct: 936 FKEVDDTVDAKEPEYIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEP 995 Query: 878 WQVNDVSTAELNAKTLQRLPGDNW-RVTSY---SGLQQRGHGIAQDLMPRLDVD-AAGVA 932 ++ND ++ + P ++ + T+Y S L++ ++M L++D V Sbjct: 996 LEINDKQYRIIDKILQSKYPNESLAKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQVP 1055 Query: 933 SVVEEPTLTPHQFPR---------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFE 983 + P+ A G H L + L V + + L + Sbjct: 1056 QGINRYVQNELSLPKFMTTKVKVSPAQVGIATHLLLQKLPLDDEVTLEELMQLLAQLVED 1115 Query: 984 SQWEPVLTEWIT----AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 + + I V + L + E+ F + I + S +D Sbjct: 1116 KLITSEVAKEINLNQIKVFYTS-DLGRKVLKNKDKVKR--ELPFAMIIPAGRLFSNVDND 1172 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + Q ++ G ID + + + DYK++ ++ + Sbjct: 1173 VEQPI----------------LVHGIIDGLIELDDEVIIFDYKTDH------HTSEDKLI 1210 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRI 1126 Y Q LY +A+ L ++ Sbjct: 1211 EN-----YRGQLNLYAMAVESMLNKKV 1232 >UniRef50_A5ZAT8 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAT8_9FIRM Length = 1220 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 233/1256 (18%), Positives = 453/1256 (36%), Gaps = 225/1256 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++++ P V +LLVVTFT AA +E++ RIR Sbjct: 17 NILVSAAAGSGKTAVLVERIIKMITDE------ENPTDVNQLLVVTFTRAAASEMKERIR 70 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + ++ DNP + +++ + A + TI FC R++ Sbjct: 71 EALEKM-------EEDNPNDLNVQKQLS--------------LIHNANISTIDSFCARVV 109 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQVV--FETWKGPQAL 193 N + + ++ ++ + Q + + E ++ + T K ++ Sbjct: 110 KDNFDKIDLDPNFRIADENEIEMLQSDIVEEMLEEYYLAADDEFMELAEKYSTGKTSDSI 169 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLA----------SRHAQIVARIDTVKQQWRDAVGEL 243 I R + + I+ E ++ + + ++ K + + +L Sbjct: 170 GELILRMYKFASGQIEPEKWIKEAISVYDVSSKEEMEQSKWMQGYLELQKNRLEGILSQL 229 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEET-----------------NSYQLPESL 286 + + S + IDK+ E T E Sbjct: 230 NIALTISESEDGPKCAKALTPIIDKLQEITESRTYSAMQSELQNIPSTRVSGKKDCNERK 289 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEIRETVAREKR 344 ++ + D TKA + ++Q+ + V I + E + + +K Sbjct: 290 KEQVKAIKNDATKAIKDLTTKQFNLTLNQVFESICETKSSVEYIGKLTLEFMKRLKEQKE 349 Query: 345 RRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 +G + F+D L A + T+F MIDE+QD++ Q I Sbjct: 350 EKGIMDFNDQAFFALHILNEYDKDGNLVPSETAKNMATQFKEIMIDEYQDSNIIQEAILS 409 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDTNWRSAP 451 I + ++GD KQ+IY FR A+ +++ + LD N+RS Sbjct: 410 AITKGFGINNMFMVGDVKQSIYRFRNAEPKLFLEKYNSFSDDPSADSVKIVLDKNFRSRR 469 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 ++ SVN LF D M E+ I K+ L + PA + L E Sbjct: 470 EVIESVNFLF----DFVMHEEVGGIDYKNG---NGLVLGADYDEPPAGQDNLTEFVMVEG 522 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV-RDA 570 GD +S A A +I++ + + G + G D RPVR DI +L+RS ++ + + R+ Sbjct: 523 GD-KSDEAAYVARKIKE-ITNPETGLKITEKGKDMRPVRYGDIVILLRSMKDNSDIYREQ 580 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L IP V+ ++ ++T+E + +L + P ++ L + L + M G ++ + Sbjct: 581 LENNGIP-VFAESKTGYYKTMEVMTITNMLSIIDNPRQDIPLAAVLTSPMFGFDSNQLAI 639 Query: 631 LNND---EHAWDVV-------------------VEEFDGYRQIWRKRGVMPMLRALMSAR 668 + + E +D V + +R + V ++ L+ Sbjct: 640 IKTENVCESFYDCVEQYSLSGSDVELRTRLTEFLNTLTKFRNMVPYTTVYDLINTLLDET 699 Query: 669 NIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 A + + GG++RL +I + E + T + +R++ + ++ + + Sbjct: 700 GYAFYIRSMPGGKKRLLNIQALKEKAVAYDETSYKGLFNFLRYIEK--IQYLAKDDGEAS 757 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV 787 + + ++V+I++IHKSKGL++P+V+L E +D Sbjct: 758 TVNENDNIVRIMSIHKSKGLQFPVVFLCNTNGTSKNEANQLVSGADGNIGIDCINNKLKT 817 Query: 788 DLA-----------EAERLAEDLRLLYVALTRSVWHCSL-GVAPLVRRRGDKKGDTDVHQ 835 + E +AE LR+LYVALTR+ + G+ ++ + Sbjct: 818 KQTPLLKTYIRMSNKEEDVAETLRILYVALTRAKEKLYITGLVKNAEKQIGEFESQIYDN 877 Query: 836 SAL----------------GRLLQKGEPQD------------------AAGLRTCIEALC 861 S L G+ + + + D + ++ +E Sbjct: 878 SELMLYNDVIGAKTIMELIGKTIGRNKAFDCVRTDKDATECGNPLYDKDSFIKVKVEEQP 937 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELN-------AKTLQRLPGDNWRV--------TSY 906 D + D+ + + +L K QR + S Sbjct: 938 DVILGLAAEDITDSIKKETMLMEMKQLANKENTSIEKLFQRFQFQYPYIEDITLHSKASV 997 Query: 907 SGLQQRGHGIAQDLMPR------LDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 + ++++ G+ Q+ +V+ + E+ + Q+ GA GT H +FE Sbjct: 998 TEIKKQSQGMEQEEEQDAFQAFGEEVELPEIIPDFEKEDIDEPQYLTGAMRGTAYHRIFE 1057 Query: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLS-------QLS 1013 LD +LE + + + I + A L + + S + Sbjct: 1058 LLDM-----------ELEEYN-----QETVKKMIDGFVDAGLIDRMGAASVMRKDIIDFT 1101 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLE-----FMQVRGMLKGFIDL 1068 + M+ A + L R+ L G P E + +++G IDL Sbjct: 1102 KSDLFRRMK---------KAYANNQLYREQHFL-MGVPACEINSNTTSKETMIIQGIIDL 1151 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 F +Y ++DYK++ + M + RY +Q + Y LA+ + L Sbjct: 1152 CFVENDKYVIVDYKTDKV---------DTMEELV--ERYHVQLECYKLAIEQILGS 1196 >UniRef50_A3DH19 ATP-dependent helicase/nuclease subunit A n=7 Tax=Clostridium RepID=ADDA_CLOTH Length = 1251 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 240/1291 (18%), Positives = 455/1291 (35%), Gaps = 234/1291 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG GKT + +R + P+ ++ LLVVTFT AA E+R RI Sbjct: 21 SLLVSAAAGAGKTAVLVERIIRKITDE------ENPVDIDRLLVVTFTNAAATEMRERIA 74 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I E LEE A + L L + +A + TIH FC ++ Sbjct: 75 QAISEK-----------------LEENPGSANIQRQLTL----LGKACITTIHSFCLEVI 113 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 N + + ++ ++ L++ +A + + + +++ R Sbjct: 114 RSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENEDFFELLECYGGNRDD--R 171 Query: 196 DINRYLQGEAPVIKAPPPDDETLA--SRHAQIVARIDTVKQQWRDAV------------- 240 + + I++ P +E L + I D K W + Sbjct: 172 ALQDMVLNLYDFIQSSPWPEEWLEKMTESMNIPDGTDFGKTLWGSVLLSSVKIELEGLKE 231 Query: 241 ---GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEET--NSYQLPESLEKFSQRFLE 295 L+ L ++SG+++ + +D + EE+ ++ +L+ F L Sbjct: 232 MISRALEILKDASGLEKYRAVYMEDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLP 291 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITR---------------------ALAE 334 + + + + + D + R+ VIT + + Sbjct: 292 RCGREVDKDKQEIVKKIRDDVKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQ 351 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVL----AAAIRTRFPVAMIDEFQD 388 + E A +K R+ + F+D+ L R E G ++ A + R RF ++DE+QD Sbjct: 352 LAEKYAEKKNRKSVVDFNDLEHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQD 411 Query: 389 TDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------AH 440 ++ Q I I + + ++GD KQ+IY FR A +++ + Sbjct: 412 SNLVQETIINMISKGDDASPGVFMVGDVKQSIYRFRQARPELFLEKYNTYLPDKGSPCRK 471 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDD----------------AFMFREIPFIPVKSAGKN 484 L N+RS ++++VN LF Q +F E + G+ Sbjct: 472 IILSRNFRSRREVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEV 531 Query: 485 QALRFVFKGETQPA-MKMWLMEGESCGVGDYQSTM-------AQVCAAQIRDWL---QAG 533 + + E + + EG G+ M A++ +I + + + G Sbjct: 532 EFHLIQTEDEDKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENG 591 Query: 534 QRGEALLMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 + ++ R V D+ +L+R+ R A D L+++ IP V+ F+T+E Sbjct: 592 RYFSVFDKAKNEYRRVEYRDVVILLRTTRNWAEVFVDELSVMGIP-VFADTGTGFFKTVE 650 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV-------- 641 Q ML LLQ + P ++ L S L + ++G ++ L +D + Sbjct: 651 VQVMLSLLQIIDNPLQDIPLLSVLRSPIVGFTTDELAELRLVDKKALLFDALKKLAESGQ 710 Query: 642 ----------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 +E +R++ +L L + + A GE+R ++ + Sbjct: 711 GEAAGKASAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILY 770 Query: 692 ELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 E ++ T + + ++ + L+ L + ++V+I++IHKSKGLE+P Sbjct: 771 ERARQFEETSYKGLFNFINFIDK--LKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFP 828 Query: 751 LVWLPFITN----FRVQEQAFYHD---------RHSFEAVLDLNAAPESVDLAEAERLAE 797 +V + + + H H A + +AE L+E Sbjct: 829 VVIVAGCGKKFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSE 888 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG--DTDVHQSALG--RLLQKGEPQDA--- 850 ++R+LYVALTR+ + A R+ +K V +S L +L D Sbjct: 889 EMRILYVALTRAREKLVITGAVKNVRKAVEKWLDSASVQKSRLSAYDMLSGANYLDWIGP 948 Query: 851 --------AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTA---------------- 886 GLR C+ + + + W DV ++ Sbjct: 949 ALLRHKNCGGLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLD 1008 Query: 887 ELNAKTLQRLPGDNWRVTSYS-----GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT 941 L + + R S+S + +L R + + + Sbjct: 1009 SLEKEEPSEYAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEVVSEDVMQFPDYMPV 1068 Query: 942 PHQFP------RG---ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGF-ESQWEPVLT 991 + P +G A GT LH + + LD+ + + E + Q + V Sbjct: 1069 LVKKPMFLEEKKGLTYAEKGTILHFVMQHLDYGREDIEAQIEEMVAKDLLTPQQAQSVDA 1128 Query: 992 EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP 1051 I L +PL + L++++ E+ F + I + ++ + L Sbjct: 1129 ARIRRFLNSPLGKRM-----LASKSINREVPFNIEIPCHELYRDMEDEACHGETL----- 1178 Query: 1052 PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQY 1111 +L+G +D F L+DYK++++ + RY +Q Sbjct: 1179 ---------LLQGVVDCYFEEPDGIVLVDYKTDYVAPGN---------VETIRERYKVQI 1220 Query: 1112 QLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 Y AL ++ + IYLF Sbjct: 1221 LYYARALEMLTGKKVKEK--------YIYLF 1243 >UniRef50_A5D1P3 ATP-dependent helicase/nuclease subunit A n=2 Tax=Peptococcaceae RepID=ADDA_PELTS Length = 1269 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 253/1314 (19%), Positives = 445/1314 (33%), Gaps = 248/1314 (18%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 AE L+ + G+ L+ ASAGTGKT +A +R + +P+ V+ LLVVT Sbjct: 20 TAEQLEAISA-RGGDVLVAASAGTGKTAVLAERIIRRITDPI------KPVDVDRLLVVT 72 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FT AA AE+R RIR L EI + ++ A + Sbjct: 73 FTSAAAAEMRERIR--------------------LALAREISRRPESGHLQRQAAL-LGR 111 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQ 181 A + T+H FC +L + + G+ ++ ++ Q A + + R Y I Sbjct: 112 ACISTVHSFCLDLLRQHFYRIGLDPSFRVADETEAALIQTGALEEVFERR-YAAEDNIFA 170 Query: 182 VVFETWKGP--QALLRDI--------------NRYLQGEAPVIKAPPPDDETLASRHAQI 225 + + + G ALL+++ +L G A P A + Sbjct: 171 ALVDCYGGRHDDALLQELVLDAYKFARSTPWPEDWLDGLAEGFNLPGGASFDRTPWSAVL 230 Query: 226 VARIDTVKQQWR-DAVGELDALIESSGIDRRKFNRSNQAKWIDKISA-------WAE--- 274 + R D L E G N + + ++ WAE Sbjct: 231 KQAAEIELAGARADLEAALRIAREPGGPQAYLANLEQEHDLVCRLLQSCRTNAPWAELYS 290 Query: 275 --------------EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP 320 +E +L F + + + P + L Sbjct: 291 YFKEVVFSPLKQCRKEDADLKLAGQARNFRESAKKKVMQVKSRYFSLPPEDLCADLRRMA 350 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-----VLAAAIR 375 I++ + + E T + K RG + F+D+ L + +A ++ Sbjct: 351 PLIKE--LAGLVREFDATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSGAVPSQVAHELQ 408 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKAR 434 +F ++DE+QD + Q I + + + ++ L ++GD KQ+IY FR A+ ++K Sbjct: 409 EKFVEVLVDEYQDINAVQETILQMVSRKGEGQSNLFMVGDVKQSIYRFRLAEPGLFLKKY 468 Query: 435 SEVHA--------HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQ 485 + A L N+RS G+V++VN +F Q + + G + Sbjct: 469 ASFSAGTGGGQGRRLALTANFRSRQGVVSAVNFIFKQIMTPAVGEMAYGSDAMLVYGADY 528 Query: 486 ALRFVFKGETQPAMKMWLME---------GESCGVGDYQ----------------STMAQ 520 +G + A+++ L+E G+ + A+ Sbjct: 529 PPVPEGQGNYEEAVELHLVERGPAGKDGGGDDPAGEEADGGVEAVEEIEEELEAGQKEAR 588 Query: 521 VCAAQIRDWLQAGQRGE----ALLMNGDDARPVRASDISVLVRSRQE-AAQVRDALTLLE 575 + A +I++ L GE RP+ D++VL+R+ A + Sbjct: 589 LVARRIKELLGGSPGGEHALEIYDRELKKYRPLTYRDVAVLLRATAGYANSFVEEFRREG 648 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 IP+ Y FE+ E + ++ LL+ + P ++ L L + +GL A D+ + Sbjct: 649 IPA-YAELSTGYFESTEVETVISLLKVIDNPRQDIPLAGVLRSPAVGLKAGDLARIRLAS 707 Query: 636 HAWD---------------------VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 D +++ + +R I R+ + ++ A+ + Sbjct: 708 PRGDFYDAVVAASLAGQGELSERLADFLKKLEEWRTIARQGTLADLIWAVYRDTGYYDFT 767 Query: 675 LATAGGERRLTDILHISELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 GG +R ++ + + ++ T +R++ + L L + Sbjct: 768 GCLPGGGQRQANLRALHDRARQFETTAFRGLFLFLRFIER--LREGGRDFGAARLLSEKE 825 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVLDLNAA----PE 785 ++V+I++IHKSKGLE+P+V++ + + + +H L A P Sbjct: 826 NVVRIMSIHKSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQLVDAEARVTRPT 885 Query: 786 SVDLA-----EAERLAEDLRLLYVALTRSVWHCSL---------------------GVAP 819 + LA + E LAE++R+LYVA+TR+ L G A Sbjct: 886 AAKLALKHRLKMEALAEEMRILYVAMTRAQEKLILVGSARNLPGCARRWCGPAGTAGWAL 945 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA-LCDDDIAWQTAQTGDNQPW 878 D +AL R ++ A A + D W+ + Sbjct: 946 PDGFLAGAGTCLDWLMAALARHRDGAAIRELAACAEEPPAEVAADRSRWRVFFSDSRGRS 1005 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVT---------SYSGLQ---QRGHGIAQDLMPRLDV 926 L + SY + + +L R D Sbjct: 1006 AEMAEEPVLLAKVRRMEPLEPAGPLAGMIKARLEWSYPAIAVLGRPAKAAVTELKRRFDQ 1065 Query: 927 DAAGVASVVEEPTLTPHQFPRG-------------ASPGTFLHSLFEDLDFTQPVDPNWV 973 AAG E + G A G LH + + LD T +D V Sbjct: 1066 LAAGEEQYGEG-HFESFRLTAGRPLFMQEKRGLTAAEAGEALHLVMQHLDLTGSLDITAV 1124 Query: 974 REKLELGGFESQWEP-----VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPIS 1028 R ++E + P V E I A PL G L L+ E+ F + Sbjct: 1125 RSQIEDMVWRELLTPEQAAAVPAEKIAAFFAGPL---GRRL--LAGFQVLRELPFTM--- 1176 Query: 1029 EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088 A Q + + P +++G ID + Y LLDYK+ G+ Sbjct: 1177 ----AVQAAEIYPELVPYPGEAV---------LVQGVIDCLVDEGDGYLLLDYKT---GK 1220 Query: 1089 DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 A RY Q +Y A+ L ++ + +YLF Sbjct: 1221 RPLG------RPEEAARRYCGQLNIYARAVESILGRKVKEK--------YLYLF 1260 >UniRef50_Q4L4Y3 ATP-dependent helicase/nuclease subunit A n=65 Tax=cellular organisms RepID=ADDA_STAHJ Length = 1225 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 219/1255 (17%), Positives = 465/1255 (37%), Gaps = 202/1255 (16%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + ++ ++ + V++LLVVTFT + E++ R+ Sbjct: 28 VLVAAAAGSGKTAVLVERIIQKIIRD--------EIDVDKLLVVTFTNLSAREMKHRVDQ 79 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 I + I ++P + L ++ +A + T+H FC +++ Sbjct: 80 RIQQASI-------EDP--------------RNEHLKNQRIKIHQAQISTLHSFCLKIIQ 118 Query: 139 LNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGP-QALLR 195 + + + I D LL Q+ + +H E +V + R Sbjct: 119 QHYDVIDLDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIEFLTLVEQLSSDRNDDNFR 178 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQ------------------IVARIDTVKQQWR 237 D+ + + +P ++L + I A T+ + Sbjct: 179 DLLKRFYNFSIANPSPFEWLDSLVEIYTDDNKHKLYLDELERLSKIYIKAAYHTLLEAEN 238 Query: 238 DAVGELDALIESSGIDRRKFNRSN---------------QAKWIDKISAWAEEETNSYQL 282 + + ++A I KF ++ + I+ ++ + Sbjct: 239 NFLNCIEAEKHLDVIKLEKFKCEKMIEGNVINFEEIINYTSEKLPTITKKLKDTNEDEGI 298 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE--PLSIRDLVITRALAEIRETVA 340 ++ F +D K E L + + L + L+ R + + + +I A Sbjct: 299 SSQFLTNAKDFFDDYKKLLSEVKNKYLMRSYEDLKVDMKRLAPRIQYLVQIVKDIINGFA 358 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEV--LAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 +KR R L F D L + G +A R++F ++DE+QDT+ Q I Sbjct: 359 EKKRSRNVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIIS 418 Query: 399 RI-WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDTNWRSA 450 +I + L ++GD KQ+IY FR AD +M L N+RS Sbjct: 419 KIKRGDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGLRIDLSKNFRSR 478 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 ++ + N LF D E+ I + + + ++ P L++ +S Sbjct: 479 KEVLATTNYLFDHMMD----EEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSD 534 Query: 511 VG-DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 + A+ A Q++ ++ Q M + R DI +L R + A ++ Sbjct: 535 NDLEKSEQEARYIAEQVKYIIEHKQ---VYDMKSETYRQATFKDIVILERGLKNARNLQQ 591 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 IP ++++++ FE E + +L L+ V P ++ L + + + ++ Sbjct: 592 VFKDYNIPF-HVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLVGLMRSVIYQFTEDELA 650 Query: 630 TLN-----------------NDEHAWDVVVEEFDG-------YRQIWRKRGVMPMLRALM 665 + D+ A ++VE+ + Y++ + V ++ Sbjct: 651 NIRVQSMNDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQEYSQSHPVYQLIDKFY 710 Query: 666 SARNIAENLLATAGGERRLTDILHIS-ELLQEAGTQLESEHALVRWLSQHILEPDSNASS 724 + + + GG+ R ++ + + ++ + + +R++ + I + Sbjct: 711 NDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIER--NKDFG 768 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT----NFRVQEQAFYHDRHSFEA-VLD 779 ++ + + ++V+++T+H SKGLE+P V ++ +++ + ++ D Sbjct: 769 EENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPLILNQKYGLGIDYFD 828 Query: 780 LNAAPESVDLA--------EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831 L L+ E E ++E++RL+YVALTR+ L + + + +K + Sbjct: 829 LEQNVTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLIL-IGTIDKEEALEKLER 887 Query: 832 ---DVHQSALGRLLQKGEPQD-----------AAGLRTCIEALCDDDIAWQTAQTGDNQP 877 +Q AL + L P D + L D++ T D + Sbjct: 888 LPISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYRFEKSIDNLDESLRPTVDIKI 947 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWRVTS----------------YSGLQ---QRGHGIAQ 918 Q ++S + ++ R D S Y L+ + Sbjct: 948 AQFEELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFKYPYLKDTEKPSKQSVS 1007 Query: 919 DLMPRLDVDAAGVA-----------SVVEEPTLTPHQFPRGAS-PGTFLHSLFEDLDF-- 964 +L +L+ + +G + S E P R A+ GT +H++ + L F Sbjct: 1008 ELKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGTLMHTVMQHLPFKE 1067 Query: 965 ---TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 T+ +++ E +E E + + AV+ ++ ++++Q + E+ Sbjct: 1068 TRMTETELNDYINELIEKHIIEEDAKKDIQ--FEAVMNFIRSDLYMTITQADKVYR--EL 1123 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 F + +++D + + +S +++G IDL+F + +YY +DY Sbjct: 1124 PF------VVNQARVDEMPESDEDVS-------------IIQGMIDLIFLKDDQYYFVDY 1164 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 K++ + T + + ++ +Y +Q + Y L L ++ Y Y FG Sbjct: 1165 KTDAFNKRRG-MTDEEVGIQLRD-KYKIQMKYYKNTLETILNSKVYGYLYFFQFG 1217 >UniRef50_Q8RCZ0 ATP-dependent helicase/nuclease subunit A n=3 Tax=Thermoanaerobacteraceae RepID=ADDA_THETN Length = 1204 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 230/1256 (18%), Positives = 454/1256 (36%), Gaps = 209/1256 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + ++ +P+ ++ LLVVTFT AA +E+R RI Sbjct: 19 NVLVAAAAGSGKTAVLVERIINIVTD------PEKPVDIDRLLVVTFTNAAASEMRERIA 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + L D+ + L +++A + TIH FC ++ Sbjct: 73 ERLISLL---------------------DQHPEDKRLADQLTLLNKATITTIHSFCLDVV 111 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGP--QAL 193 + F + ++ +D LL+ +A + + Y E ++ E++ G Sbjct: 112 RKHFFLLDLDPSFRVGDDTETLLLKLEAMEELF-EELYEKNDEGFLLLVESYGGTKGDQY 170 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE----------- 242 L+D+ L G + P + + +W + + + Sbjct: 171 LQDVLLKLYGFIRSLPWPEKWLNNVLEAFE-VKEDFSFEDSKWAEVILDSIKVEILGLLN 229 Query: 243 -----LDALIESSGIDRRKFNRSNQAKWIDKI---SAWAEEETN----SYQLPESLEKFS 290 ++ L E G++ ++A + ++ +W E + S++ K + Sbjct: 230 GMSVAIEKLREERGLEGYLSLFQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASKEA 289 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL----------VITRALAEIRETVA 340 +++ + E + + E D+ + + + + Sbjct: 290 DAEVKEEVRKLREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKKYG 349 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 +K+ +G + F+D+ L S E + + R +F IDE+QD+ Q I I Sbjct: 350 EKKKEKGVIDFEDIEHFALKIL---SNEEVVSYYREKFEEIFIDEYQDSSLIQEAILSLI 406 Query: 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-----AHYTLDTNWRSAPGMVN 455 P ++GD KQ+IY FR A+ + + + + L N+RS +++ Sbjct: 407 ARDNPPNR-FMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGENKKILLYKNFRSRKEIID 465 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 +VN +F + + K F+ E + +++ L+E E + Sbjct: 466 AVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKENERTVEVHLIEREREEEFEED 525 Query: 516 -------STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA-QV 567 A V +I+ + G + RPV DI VL+R+ ++ A Sbjct: 526 EEILDDMQVEAHVVGERIKGLFREG--FKVYDKEIGGYRPVEYRDICVLLRATEKWAYAF 583 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 + + IP V+ F+T E + ML LLQ + P ++ L + L + + + Sbjct: 584 EEEFVKMGIP-VFADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRSPIFSFTEEE 642 Query: 628 IETLN---NDEHAWDVV-------------VEEFDGYRQIWRKRGVM----PMLRALMSA 667 + + D ++ + V F + W+++ + L L Sbjct: 643 LVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVDEFLWYLYEE 702 Query: 668 RNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQ 726 + A G R ++ + E +E T + V ++++ L S Sbjct: 703 TGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINR--LRTTSTDMGSA 760 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF----RVQEQAFYHDRHSFEA-VLDLN 781 + ++++V++++IHKSKGLE+P+V + + + E+ YH +D Sbjct: 761 KTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHFLGIGPEFVDYR 820 Query: 782 AAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 833 + + E L+E++R+LYVALTR+ L + + KK Sbjct: 821 RRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERAKKWG--- 877 Query: 834 HQSALGRLLQK---------GEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVS 884 LG+ + + + +A +R L + D+ W+V + Sbjct: 878 KAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAEISPELEQDSSKWEVKIWN 937 Query: 885 TAELNAKT-----------------------LQRLPGDNW-RVTSYSGLQQRGHGIAQDL 920 ++ + ++ + V Y + ++ Sbjct: 938 KRDVIIERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAKLSVTE 997 Query: 921 MPRLDVDA---AGVASVVEEPTLTPHQF---PRG---ASPGTFLHSLFEDLDFTQPVDPN 971 + R+ D S+ E L F RG A G +H + + LD ++ + Sbjct: 998 IKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSKDLSYR 1057 Query: 972 WVREKLE-----LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 ++E+++ E Q + V I + PL G L L A+ + E+ F++ Sbjct: 1058 GIKEQIKDMVKNEILTEEQAKEVDANKIERFFKTPL---GKRL--LKAKEVRREVPFHIK 1112 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 IS I L + ++ EF+ V+ G ID F EG L+DYK++++ Sbjct: 1113 ISSREIYRDLPEVYQE-----------EFIAVQ----GIIDCFFEEEGELVLIDYKTDYV 1157 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 + +Y +Q LY AL ++ + IYLF Sbjct: 1158 ---------ENGKIEEIRDKYRVQIDLYGKALEEITGKKVKEK--------YIYLF 1196 >UniRef50_Q043G6 ATP-dependent helicase/nuclease subunit A n=25 Tax=Lactobacillus RepID=ADDA_LACGA Length = 1204 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 202/1244 (16%), Positives = 439/1244 (35%), Gaps = 190/1244 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M++ + D + L+ ASAG+GKT + L+ +L V LL Sbjct: 1 MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGT---------PVSSLL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 ++TFT+AA E++ RI+ I + + Q+L Sbjct: 52 IITFTKAAAREMKERIKQKISDQL---------------------EIEPDNQFLRSQLLD 90 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRE 178 +D A + TI FC ++ + + + ++ DE + L + + Sbjct: 91 VDTANISTIDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQ 150 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD------------ETLASRHAQIV 226 Q ++ + G + N LQ P + + L + Sbjct: 151 DFQDFYDNFSGDRDAEGARNLLLQLYNTATTEPNYEKFLDNLPTCYEVGDNLIRSNLWQQ 210 Query: 227 ARIDTVKQQWRDAVGELDALIESSGIDRRKFNR--SNQAKWIDKISAWAEEETNSYQL-- 282 + ++ D E++AL+ I+ + N + +++ ++ E Sbjct: 211 QIKPLLLKEISDLKAEVEALLAEPEINSSDLVKVKENYDIFSNRLDSFWESLNTDQPYNE 270 Query: 283 ---------PESLEKFSQRFLEDRTKAGGETPRHPLF--EAIDQLLAEPLSIRDL----- 326 E + S+++ ++ + ++ L + + ++ A + + Sbjct: 271 IRANLMNCKFEKAVRKSKKWSDESIEVYQDSQDLKLDLNDQLKKIFASFFVVEEKEQIAV 330 Query: 327 ---------VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV--LAAAIR 375 I A ++ + ++ KR + + + DM S L +++ + Sbjct: 331 LQKSEKIVKTIVAAEKKLIQKFSQLKREQNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQ 390 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKA-- 433 +F +IDE+QD + Q I + I + + L ++GD KQ+IY FR A ++ Sbjct: 391 EKFNEILIDEYQDVNALQENIIKAI-KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYH 449 Query: 434 ---RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV 490 + L N+RS + +VN LF + + I K G+ Q Sbjct: 450 TYGKDNDSEKIILADNFRSTKRVTKTVNDLF----NPILTTNFGGIDYKKEGQLQFGASY 505 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQS-------TMAQVCAAQIRDWLQAGQRGEALLMNG 543 + + A + + + + Q+ A+I+ + + Sbjct: 506 YPSDLPTASEYIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQL--KAENFQVWDRRT 563 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RP+ SDI+++ R+R + QV ++P +++++ + F+T E ++ L+ + Sbjct: 564 QLKRPLEYSDIAIITRTRSDNLQVMQEFAKADLP-LFVTDAQNYFQTFELIMIMNYLRLI 622 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWD--------------------VVVE 643 P+++ L + + + + ++ + A + ++ Sbjct: 623 DNPQQDIPLVAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEFLQ 682 Query: 644 EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLE 702 + + R + ++ ++ ++ E + G++R ++ + E + Sbjct: 683 QLETLRSFAATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFK 742 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI----- 757 + + ++ + + + +Q + + + V+++TIH SKGLE+P+V++ + Sbjct: 743 GLYQFISFIER--MRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQ 800 Query: 758 -----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 NF + + +D + + L E+ R+LYV LTR+ Sbjct: 801 TRDLSGNFTISQNELGLTIKEKNYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRAQQK 860 Query: 813 CSLGVAPLVRRRGDKKGDTDVHQS----ALGRLLQKGEPQDAAG------------LRTC 856 L + KK +++ Q L + + P D G +R Sbjct: 861 LILVASVNEIENKRKKWVSELDQKKDIIPLVKKINAQSPLDFLGPKLEQKHEFDQTIRDM 920 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNA-----------KTLQRLPGDNWRVTS 905 AL + D + D +P ++ D + + D + T+ Sbjct: 921 TSALEEQDKLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPFEDATKTTA 980 Query: 906 YSGLQQRGHGIAQDLMPRLDV------DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLF 959 Y + + + L+ + + E PT Q GA GT +H + Sbjct: 981 YQSVSEIKKAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEIGTAMHLVL 1040 Query: 960 EDLDFTQPVDPNWVREKL----ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSAR 1015 + ++ D + +++ ELG S P L++ LN +S + Sbjct: 1041 QYYNYEGNKDQENLDQEIDQLVELGKLNSLMVPHLSKE-------ALNW--FVMSDFAK- 1090 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 EF+ + SQ +L+ + + P + V G + G+ F + Sbjct: 1091 ------EFWKQPDKLHRESQFSSLVNASELFNDFSDPSAKVLVHGTVDGY----FEAKDG 1140 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 L DYK++++ + T + A +Y Q +LY AL+ Sbjct: 1141 LILFDYKTDFVDK-----TNEEQAIEKIKQKYTGQLRLYEQALN 1179 >UniRef50_Q65LJ9 ATP-dependent helicase/nuclease subunit A n=3 Tax=Bacillus RepID=ADDA_BACLD Length = 1230 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 227/1266 (17%), Positives = 446/1266 (35%), Gaps = 213/1266 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + +R + RP+ V+ LLVVTFT A+ AE++ RI Sbjct: 27 LVAAAAGSGKTAVLVERIIRKITDQ------ERPVDVDRLLVVTFTNASAAEMKHRIGEA 80 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + +E +NP + L +++A++ T+H FC +++ Sbjct: 81 LE-------KELAENP--------------GSLHLRRQLALLNKASISTLHSFCLQVIRK 119 Query: 140 NAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDI 197 + + ++ + + LL + + + ++V L Sbjct: 120 YYYLIDVDPAFRIADQTEGELLGDEVLDELFEEEYKKGNPAFFELVDRYTTDRHDLD--- 176 Query: 198 NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK-------QQWRDAVGEL-----DA 245 ++L PD E A++ K ++ + + Sbjct: 177 LQHLVKRVYEFSRSHPDPEGWLHSLAELYDAASDTKVEALPFYSYIKEDIALVLEGMRQK 236 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK--AGGE 303 L + + ++ + +A+ A + +L + R K G E Sbjct: 237 LTRALDLTKQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELVPTVSFQRLKPCKGDE 296 Query: 304 TPRHPLFEAIDQLLAEPLSIRDL------------------------VITRALAEIRETV 339 + EA D + + L + + + E Sbjct: 297 YDPRLVDEAADLRNSAKKQLEKLKSDYFSRTPEQHLESLREMKPVIQTLVQLVLEYGRRF 356 Query: 340 AREKRRRGELGFDDMLSRLDSAL--RSESGEVL----AAAIRTRFPVAMIDEFQDTDPQQ 393 A K+ + + F D+ + L ++ +GE + A R +F ++DE+QDT+ Q Sbjct: 357 AEAKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRHQFHEVLVDEYQDTNLVQ 416 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-------HAHYTLDTN 446 I + + + E L ++GD KQ+IY FR A+ ++ L+ N Sbjct: 417 EAILKLVAKEEHEGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTDDGSGSGQKIDLNKN 476 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME- 505 +RS +++S N LF Q M ++ + + + L + ++ L+E Sbjct: 477 FRSRSDILDSTNFLFKQ----LMGEKVGEVEYDEQAELK-LGASYPPNEATKTELLLIET 531 Query: 506 -----GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 GE + A+ A QIR + ++ + +R ++ DI VL+RS Sbjct: 532 PSGAPGEEAEELEAVQLEARAMAGQIRRLIT--EKFQVYDAKAKASRNIQYRDIVVLLRS 589 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 A Q+ D IP VY + FE E L LL+ + ++ L S L + + Sbjct: 590 MPWAPQIMDEFKQQGIP-VYANLSTGYFEATEVSVTLSLLKIIDNAYQDIPLASVLRSPV 648 Query: 621 MGLNALDIETLN-------------------NDEHAWDVVVEEFDGYRQIWRK----RGV 657 +GL+ ++ + + + + FDG + WR V Sbjct: 649 VGLDENELSLIRIKDKKAPFYEAMKAYLAAADGDERLSEKLRRFDGLLKKWRAYAKNHSV 708 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHIL 716 ++ + + + GG++R ++ + + + T +R++ + Sbjct: 709 AELIWEIYRDTKYLDYVGGMPGGKQRQANLRALYDRARSYEATSFRGLFRFLRFIERMQE 768 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRH- 772 D +++ L + +V+++TIH SKGLE+P+V+ + N +++ D+ Sbjct: 769 RGDDLGTARA--LSEQEDVVRLMTIHSSKGLEFPVVFTAGLGRNFNMMDLNKSYLLDKEL 826 Query: 773 ---------SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRR 823 + E L+E+LR+LYVALTR+ L + Sbjct: 827 GFGTKFIHPKWRISYPTLPLIAMKKKLRRELLSEELRVLYVALTRAKEKLYLVGTAKDKE 886 Query: 824 RGDKKGDTDVHQSA-----------------LGRLLQKGEPQDAAGLRTCIEALCDDDIA 866 + T S +G L + D +G I+ + + Sbjct: 887 KLLADWRTQAAGSEWLLPDYERFQAKSYLDFIGPALMRHRDMDESGAPPVIDEIREHPAR 946 Query: 867 WQTA-QTGDNQPWQVNDVSTAELNAKTLQRLPGD----------------NWRVTSYSGL 909 +Q + + + + D + E + + +Q G W Sbjct: 947 FQVSWLSAADLQAEAVDQAGEERHDRLVQIQMGHAIEGAFEYEQQVRERLAWSYPYKDAA 1006 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR----------GASPGTFLHSLF 959 + R ++ + + + + P+ F R A GT +H++ Sbjct: 1007 KVRTKQSVSEMKRQKEYEDEYGDRSLIRPSQEALLFKRPSFMMAKGLTAAERGTAMHTVM 1066 Query: 960 EDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWIT--AVLQAPLNETGVSLSQLSARNK 1017 + + T+ + N + L+ + I +L E G L AR Sbjct: 1067 QHIPLTRTPEKNELSRLLDRLVEKELLTEDQRAAIEEDDILAFFDTEIGQKL--FGARRV 1124 Query: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 + E+ F + +S + P LE +++G ID +F E +Y Sbjct: 1125 EREVPFNMTLSAKEV-----------------YPDLESADEPVLIQGIIDCLFETEDGFY 1167 Query: 1078 LLDYKSNWL-GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 LLDYK++ + G+ + + A + RY+ Q QLY A+ ++ + G Sbjct: 1168 LLDYKTDRIHGKYRNGFEG---AEPILRKRYETQIQLYARAVETMIKMPLK--------G 1216 Query: 1137 GVIYLF 1142 +Y F Sbjct: 1217 RALYFF 1222 >UniRef50_B1YKM8 ATP-dependent helicase/nuclease subunit A n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=ADDA_EXIS2 Length = 1183 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 234/1213 (19%), Positives = 428/1213 (35%), Gaps = 167/1213 (13%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + + ++ PLT + +LV TFT AA E++ R+ Sbjct: 18 GHILVSAAAGSGKTAVLVERLTQRVINQ------EDPLTADRILVATFTNAAAKEMKTRV 71 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 I A ++ D+ +L + M+ A + TIH FC + Sbjct: 72 IEAIE----AKIKVAPDD-----------------LYLKKQRQMMNRAQITTIHSFCLSI 110 Query: 137 LNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQVVFETWKGPQA-- 192 L N + G+ ++ E+ LL Q + + +++ Sbjct: 111 LRENYYRIGLDPAFRIAEEAELLLLQDDVLEEVFESFYASADPAFYELIDSYTSDRDDQA 170 Query: 193 ---LLRDINR-----------YLQGEAPVIKAPPPDDETLASRHAQI--------VARID 230 L+ ++ R Y A + PD+ +L +R ++ + R Sbjct: 171 MLTLISNLYRFSRSLPDPEAFYDHLIAQYDQPIDPDESSLLTRLFELEWERVGPVINRYM 230 Query: 231 TVKQQWRDAV-GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP---ESL 286 + + R + E+ L+ R+ N +W A+ E ++ E + Sbjct: 231 ELSYRLRQSGYDEMADLLVQDVTPVRRINPEQD-RWTTVALAFQAVEFGRWKGIRGDEEM 289 Query: 287 EKF---SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREK 343 +KF R + D K + ++ L ++ + +I + K Sbjct: 290 KKFQTERTRLVSDLKKMRDLFVEKDGVDYLEDLRSQLGHVE--MIVTLVRSFSAAYLEAK 347 Query: 344 RRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 ++RG + F D+ + L +A ++ RF ++DE+QDT+ Q RI R + Sbjct: 348 QQRGIVDFSDLEHFALAILEENGEPTDVARLLQERFIEVLVDEYQDTNEVQERILRLVSK 407 Query: 403 HQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-----HYTLDTNWRSAPGMVNS 456 T L ++GD KQ+IY FR A+ ++ L N+RS +++ Sbjct: 408 SDEATGNLFMVGDVKQSIYKFRHAEPGLFLNKFKRFQQTEVGTRIDLTKNFRSRLEVLDG 467 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 N +F Q D + I A + + TQ ++ L++ + + Sbjct: 468 TNHIFRQVMD----EAVGEIDYDEAAYLRLGNLGYVDSTQVDPELLLVDQTDTNKEELE- 522 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR-QEAAQVRDALTLLE 575 AQV A +I + + R DI +LVRSR + + D E Sbjct: 523 --AQVIATRIIEMVNDENPYLVFDAKQKRFRKCEYRDIVILVRSRGKRVQALVDVFEQYE 580 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 +P VY F+ E Q M+ LL+ + P ++ S L + + GL D+ + Sbjct: 581 LP-VYADTTGGYFQATEIQIMMSLLKTIDNPLQDIPFASVLRSPIFGLTDRDLGRIRAKS 639 Query: 636 H--------------------AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 D + + +R R + + ++R+L E + Sbjct: 640 KDGSFYEAAILVAKEQTPLGLRVDEALNQLHHWRTEARGKSLASLIRSLFDQTGYFEYVG 699 Query: 676 ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ-HILEPDSNASSQQMRLESDKH 734 GG R ++ + E + + L R+L H L S+ L D+ Sbjct: 700 CLNGGRSRQANLNALYERAHQ--YEASGYRGLYRFLRLIHRLVERGEDFSEARSLGEDED 757 Query: 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDL----- 789 +V+I+TIH+SKGLE+P+ + + ++ + + L+A L Sbjct: 758 VVRIMTIHQSKGLEFPVTIVSQLGKQFNKQDQIQAIQLHKTYGIALDAIDPVKRLRSGTL 817 Query: 790 --------AEAERLAEDLRLLYVALTRSVWHCSL-GVAPLVRRRGDKKGDTDVHQSALGR 840 + E AE++R+LYVA+TR+ L G + + K D + + L Sbjct: 818 LKEVIRREMDREMKAEEMRVLYVAMTRAKEKLILVGAIKGLEDQLIKWQDQPLDELLLPE 877 Query: 841 LLQK-----GEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 + ++ + A LR + + +++ + P+Q +L + Sbjct: 878 MDRRNAKTYADWVVPAVLRNFLLSEDGPRWSFRIIALDEIAPYQELTKMVEQLEHVRVLE 937 Query: 896 LPGD------------------NWRVTSYSGLQQRGHGIA-QDLMPRLDVDAAGVASVVE 936 ++V + + +Q + + + R ++ S Sbjct: 938 KIDHAGDETLNIQIEAAFAYQYPYQVATDTAAKQTVTELKRTEQLERAAFESTHRQSTYY 997 Query: 937 EPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVR-EKLELGGFESQWEPVLTEWIT 995 GA GT LH + + + + + E+ E S + E I Sbjct: 998 RTPQFLGPTLTGAERGTVLHLAMQLYESGRSFEEQILDWEQAER--ISSLEAQTMREAIP 1055 Query: 996 AVLQAPLNETGVSL--SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 L L L +L A E+ F I + Sbjct: 1056 E-LTTFLASDTGQLFEQRLLAGEVYRELPFTYKIDS-----------------ARFRSDW 1097 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 + +++G +D + R Y LLDYKS+ + E + Q A + RY Q L Sbjct: 1098 HGPSDQAVMQGIVDCLIRDGDTYILLDYKSDQVFETTDNQNQ----AEVLRTRYATQLNL 1153 Query: 1114 YTLALHRYLRHRI 1126 Y AL L RI Sbjct: 1154 YQEALEAILHIRI 1166 >UniRef50_B5CQ86 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQ86_9FIRM Length = 1256 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 249/1310 (19%), Positives = 467/1310 (35%), Gaps = 260/1310 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + + P+ V++LLVVT+TEAA AE++ RI Sbjct: 19 NILVSAAAGSGKTAVLVERIISRITDEKN------PVDVDKLLVVTYTEAAAAEMKERIA 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + I + L + A + T+H FC ++ Sbjct: 73 AAIEKKLEEFPGNLN---------------------LEQQASLIHSAMITTVHKFCLSVI 111 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGP----- 190 + G+ ++ E+ L L+ + H E + V + G Sbjct: 112 RDHFHVIGIDPSFRVGEEGELRLLKQDVLDEMLEEHYAKDEEEFREFVEKYGTGRTDKKI 171 Query: 191 QALLRDINRYLQG--EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIE 248 + L+ + Y + + +D + H + + TV+++ R +G+L L+ Sbjct: 172 EELILQLYEYSRSYPDPRQWLISCAEDYEIDREHLEDSRMVHTVEERVRQQLGDLYGLVR 231 Query: 249 SSGI-----------------DRRKFNRSNQAKWIDKIS------AWAEEETNSYQLPES 285 + D ++ + +A +K+S W + + ++ Sbjct: 232 QAMEICQLPAGPYMYAEALESDEKELKKLERADSYEKMSEVLMDFNWKKLSGKKDETVDA 291 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLFEA-IDQLLAEPL--SIRDLVITRALAEIRETVARE 342 + S + + + KA + + F A D+ +A+ + +T + E + + Sbjct: 292 ELRKSVQAVRKQLKALIDGIQKSYFYATADEWVADMQDSAQAMRTLTGLVQEFADRFDEK 351 Query: 343 KRRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 KRRR + F DM + L + +A + RF M+DE+QD++ Q I Sbjct: 352 KRRRNMIDFSDMEQFALAILTRNTEGKIVPSAVAEEYQERFAEVMVDEYQDSNLVQETIL 411 Query: 398 RRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNWRSA 450 + + + ++GD KQ+IY FR + +M+ L N+RS Sbjct: 412 TSVSGMSKGRNNMFMVGDVKQSIYRFRLSRPELFMEKYDTYSVESSPCQRIDLHKNFRSR 471 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKS----AGKNQALRFVFKGETQPAMKMWLMEG 506 +++S N LF + MFRE I + ++ + Sbjct: 472 KEVLDSTNYLFEK----LMFREFGGIEYDENAALYAGAEFPPIPEDAVFTDKTEVLIFNQ 527 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 + D + A++ A +IR+ + + G D R ++ DI +L RS Q A+ Sbjct: 528 QDMKARDAKEAEARMIARRIREMMGS---GYIYDKGSDSFRKIQYKDIVILTRSIQGWAE 584 Query: 567 VRDA-LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 A L IP+ +S R+ FET E +L L+ + ++ L + L + +GL+A Sbjct: 585 SFSAVLAEEGIPAYSVS-REGYFETYEISVLLDYLRILDNARQDLPLTAVLTSPFVGLDA 643 Query: 626 LDIETL------------------------------------------------NNDEHA 637 ++ + N Sbjct: 644 EELAQIRLAYPNLPFYESVWLCGEEKTEETGADGSGETGEKEKKEKKKSDAEAENRSGEI 703 Query: 638 WDVVVEEFDG-------YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHI 690 + V E+ +R I + +L ++ + A GGE+R+ ++ + Sbjct: 704 SEAVREKLAEFTRQVRYFRSILSYTPIHDLLAKILEETGYRTFIAAMPGGEQRIANVEML 763 Query: 691 SE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 E GT + VR++ Q L+ + + ++ V++++IHKSKGLE+ Sbjct: 764 IEKACAFEGTSYKGLFNFVRYIEQ--LKKYNVDYGEAGIMDEQADTVRLMSIHKSKGLEF 821 Query: 750 PLVWLPFITN-FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA---------------- 792 P+V++ + F +Q+Q R S D ++VDL + Sbjct: 822 PIVFVAGMGKSFNMQDQ-----RGSIVIHPDWGIGIDAVDLEQRTKNPTFLKRMIQEKTK 876 Query: 793 -ERLAEDLRLLYVALTRSVWHCSLG---------------VAPLVRRRGDKKGDTDVHQS 836 E L+E+LR+LYV +TR+ L + +++R + + Sbjct: 877 LENLSEELRVLYVGMTRAKEKMILTGTAKLGEEELLALEMMEDIIKREEKQNSWKADEKD 936 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 +L +G + + W + + + + A+ L R Sbjct: 937 SLALYQMEGAKTCFDWILPALMRDWKKAEKWIQVRLVTREELSYGAATAGQ--AEVLARE 994 Query: 897 PGDNWRV-----------------TSYSGLQQRG---HGIAQDLMPRL-------DVDAA 929 ++W +Y LQ+ +L R+ ++ Sbjct: 995 VLEHWDTEKSYMPEWKELLSEQMNYTYPYLQEEQMKLKFTVSELKKRIYAGEQMREMQED 1054 Query: 930 GVASVVEEPTLTP---------HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELG 980 G + +EP + P + GAS GT H L E LDFT+ ++ + Sbjct: 1055 GGEELYQEPEIVPLVPGFMQDQKEGLTGASRGTAYHKLMELLDFTRQYTEAALKNAVH-- 1112 Query: 981 GFESQWEPVLTEW----ITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQ 1035 FE + + L I+ +L + +G +S + + K E F L + Sbjct: 1113 DFEKKKKMTLEMAACIRISDILLFLESSSGKRMSAAAGKGKLWREQPFVLGVD------- 1165 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 Q P +G P + +V +++G ID F E +LDYK++ Sbjct: 1166 ----ADQVYPGFSGEPGSQEKEVI-LVQGIIDAYFEEEDGIVVLDYKTD----------- 1209 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF-LR 1144 + +A RY Q + Y AL L + + +IY F LR Sbjct: 1210 KVKSAEQLKERYHAQLEYYAQALEGLLEKPVKEK--------IIYSFTLR 1251 >UniRef50_D2EH37 Recombination helicase AddA n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EH37_PEDAC Length = 1238 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 237/1279 (18%), Positives = 457/1279 (35%), Gaps = 224/1279 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + ++ ++ V+ LLVVTFTEAA AE++ RI Sbjct: 19 HNILVSASAGSGKTSVLVERVIQKIIN---------GEDVDRLLVVTFTEAAAAEMKERI 69 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 R+ I + + E D L L L +++ A + T+H FC + Sbjct: 70 RAAI----MKKISEVKDADLQNH--------------LSLQLGKLNNANISTLHAFCMAV 111 Query: 137 LNLNAFESGMLFEQQLIE-DESLLRYQACADFWRRHCYPLPRE----------------- 178 + + + ++++ ES L + R Y + Sbjct: 112 IRNYYYVIDLDPAFRIMDPTESELLKEQVWADLREELYESDEDGQFARLTRNFSNDRSDA 171 Query: 179 -IAQVVFETWK------GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 + +++ + ++ P+A L I + + + + LA Q++ T Sbjct: 172 GLQELMLDLFEFANANPDPEAWLTKIANNYEVQTDQVMEMDFVKQILAKIKTQLIQIYQT 231 Query: 232 VKQQ----------WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 + A A + +F++ N + + + + Sbjct: 232 DLNLTERAINGGEPLQKAAANFQAEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGK 291 Query: 282 LPESLE-KFSQRFLEDRTKAGGETPRHPLFEAI-DQLLAEPLSIRDLVIT--RALAEIRE 337 PE E + L + KA F+ DQL+A R++++ + + Sbjct: 292 KPEVQEFNLEAKPLRNEFKAEFNGLVERYFKLKNDQLIAIFKDAREIMLKLIEVQQQFSD 351 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRS--ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 +EK R L F D+ L++ E G+ + + +F ++DE+QD +P Q Sbjct: 352 RFLQEKLTRRSLDFSDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQET 411 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTLDTNWRS 449 I + P + ++GD KQ+IYAFR AD ++ L N+RS Sbjct: 412 ILTAVAREDPG-NMFMVGDVKQSIYAFRMADPSLFISKSRRFKQSGQPDERIILAENFRS 470 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 + + N +F+Q D + + I + + + + E Q ++ L + + Sbjct: 471 MQNVDDFTNLIFNQIMD----QAVGEIAYDADAQLKFGAKYYPAEVQNDTEVLLFDDQQN 526 Query: 510 GVGDYQSTMA----------QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 Q A Q+ A +I+ + E + + RP++ SDI++L Sbjct: 527 ENTADQEPGAIITDKNDGQLQMIAQRIKRLF--ADQTEVFDRDTQEMRPLKYSDIALLHS 584 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 + + D IP + +SN F+T E M+ LL+ + P ++ L + L + Sbjct: 585 TGNNNLNIVDTFKKYGIP-IEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSP 643 Query: 620 MMGLNALDIETLN-----------------------------NDEHAWDVVVEEFDGYRQ 650 ++GL+ ++ L N + D + + +R+ Sbjct: 644 IVGLDENELAFLRISKKNGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLAQLQHFRK 703 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVR 709 + ++ ++ +L + + + G +R ++ + + Q + + VR Sbjct: 704 LSQQCTLVDLLWEIYQETGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFVR 763 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQA 766 ++ + + N + + +D V+++TIH SKGLE+P+V+L N + Sbjct: 764 FVEKM---REKNKDLAENPVVTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGR 820 Query: 767 FYHDRHSFEAV--------LDLNAAPES--VDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 + DR + + L+++ ++ +D+ + + LAE+LR+LYVALTR+ + Sbjct: 821 YVLDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIVT 880 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC-------------------- 856 A +K L LL + E A Sbjct: 881 GALKAATPTLEKWAQAADTGEL--LLPEAERGKAKNFLDWIGMAIMRVPSVMENYPEVSS 938 Query: 857 --IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN-------------- 900 +++ ++ + D Q +D + TL+++ ++ Sbjct: 939 RKLDSFAGVEVKLKVVNRADLLAGQRSDTGIEQGTPPTLEKMDVNSDINDADQIRAILNF 998 Query: 901 -------WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE------EPTLTPHQF-- 945 + T+Y + + +D A + L +F Sbjct: 999 KYHDIEATQTTAYQSVSEIKRVFDDPDKLEMDFSAVDRDQKIRPQKRFVTDQLMTPRFMS 1058 Query: 946 ----PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAP 1001 P+ GT H + + LD +PV +++K+ E + + I + + Sbjct: 1059 EVSQPKPTEIGTATHLILQQLDLREPVTQAVIKDKIRELVMNQVLEEAVAKRIR--INSI 1116 Query: 1002 LNETGVSLSQL---SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 L+ L QL E F L + G P Sbjct: 1117 LDFFESELGQLMLAHPEQVHREEAFSL------------------LLPAKGLFPNVVGNQ 1158 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 ++ G ID F +GR LLDYK++++ S QQ + + RY Q LY AL Sbjct: 1159 DVLIHGIIDAYFELDGRVILLDYKTDFVLPGSP---QQGIQKVID--RYQGQVNLYAQAL 1213 Query: 1119 HRYLRHRIAD-YDYEHHFG 1136 L + + Y Y G Sbjct: 1214 SNILGKPVNEKYLYLLSIG 1232 >UniRef50_O51578 Exodeoxyribonuclease V beta chain n=20 Tax=Borrelia burgdorferi group RepID=EX5B_BORBU Length = 1169 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 249/1236 (20%), Positives = 473/1236 (38%), Gaps = 169/1236 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 LIEASAGTGKT + + + L+ + ++ E+LV+TFT+ AT E+ RI Sbjct: 13 TILIEASAGTGKTHILENVVINLIK--------TKLYSINEILVLTFTKKATEEMHTRIL 64 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I ++ + L A Q + + TI+ F L Sbjct: 65 KVIENAY---------------------SNSKTNEILKEAYEQSKKLFISTINKFALHAL 103 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRR-HCYPLPREIAQVVFETWKGPQALLRD 196 N E+ + + E S + DF R+ +I + +K + Sbjct: 104 NNFQIETENYSKYKPKEKFSKEIDEIVYDFLRKSDSLIQALDIKDYELKVFKSDAKKTEE 163 Query: 197 INRYLQGEAPVIKAPPPDD-ETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRR 255 I ++ D + I+ + + + + + + +LD + + + Sbjct: 164 IVLKIKKAYERDTTQELGDWLKTQTAFENILLKKEELIKDYNKIIEDLDKMTKDEILSF- 222 Query: 256 KFNRSNQAKWIDKISAWAEEETNSYQLPESL--EKFSQRFLEDRTKAG------------ 301 +N+ Q K+ +E + +++ E+L KF +E TK Sbjct: 223 -YNKHIQT---GKLEIEYSKENDIFKIAETLLKNKFFSTLIEKETKKNSKLSPKELKIKN 278 Query: 302 -----GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRR----GELGFD 352 G +H +++ D +++ VI + +I + + +E ++ + + Sbjct: 279 DLICLGINIKHEKYKSEDNRNKNRNNLKQYVILKVEYKILKYIEKELKKTIKSTNTIDQN 338 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLI 412 ++S L + L+SE + L AI+ R+ + +IDE QD Q IF+ + L+ I Sbjct: 339 YIISNLKNYLKSE-DKKLLNAIKNRYKIILIDEAQDLSLIQIEIFKIL--KTAGIKLIFI 395 Query: 413 GDPKQAIYAFRGADIFTYMKA---RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 DPKQ IY+FR ADI Y K + A L N RS+ ++ +NK+F+ + + Sbjct: 396 ADPKQIIYSFRKADISFYNKEIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAI 455 Query: 470 FREIPFIPVKSA---GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 EI I ++ KN + V G+ + + ES + + Q A I Sbjct: 456 ADEIEKIDFTNSLPNQKNDNNKIVINGQEIEGINIITTNTES------EEDIYQKTALTI 509 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 + L G+ + + R ++ DI VL R + E + AL +I + ++ Sbjct: 510 KYLLAYGK-----IAENNKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQT--NKTQEK 562 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG--LNALDIE--------------- 629 +T E E+ ++++ + + TL L++ ++ N I Sbjct: 563 FLKTKEFSEIFYIIKCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKICLIEEFIEN 622 Query: 630 ---TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 L +E + + + +W K + + ++ N E +L + Sbjct: 623 IIVLLEKNEITLINAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLEN 682 Query: 687 ILHIS---ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMR-LESDKHLVQIVTIH 742 + E++ + + ++ +L+ L I+ + +++ + +D ++++TIH Sbjct: 683 LKTYETTLEIISKIYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIH 742 Query: 743 KSKGLEYPLVWLPFIT-----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAE 797 KSKGL +V+L T NF ++ FY + D E+ A + L+E Sbjct: 743 KSKGLGMNIVFLLNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFKLEENKKYARLKILSE 802 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI 857 + + YV TR+ + + S +LL+ + ++ Sbjct: 803 EKNIFYVGATRAKFALFIIKI----------------NSITSKLLEIAKIFTIDDIKH-- 844 Query: 858 EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 D +I Q N+ +V+T + K + + +S+S L + H Sbjct: 845 ----DFNIHEFIGQKRFNKKKYNTNVNTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHK- 899 Query: 918 QDLMPRLDVDAAGVASVVE---EPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---- 970 + D E EP L P+G G LH+ E++ F+ D Sbjct: 900 -EFYENYDFKNINYEKETELDYEPGL-EETLPKGKDIGNILHAAMEEIIFSTAKDTFDNF 957 Query: 971 -----NWVREKLELGGFES---QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEME 1022 + ++++ + + L + I +L + L + K EME Sbjct: 958 KKNNIEIIEKQIQKINSNLNTIEIQNSLAKMIYNILTYNIRAINTRLCDIEELQK--EME 1015 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 F + I+ +Q L G LKG +DL+F+ + Y+LDYK Sbjct: 1016 FLIKINPEFQ--------KQKYLFDKHFEDLHIKLSDGYLKGIVDLIFKANNKIYILDYK 1067 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 +N+LG++ Y + ++ YDLQY++Y L + + L +Y+ FGG+IYLF Sbjct: 1068 TNYLGKNKEDYNITNLENTIKKEYYDLQYKIYALGIKKILFKNKKEYN--QKFGGIIYLF 1125 Query: 1143 LRGVD------KEHPQQGIYTTRPNAGLIALMDEMF 1172 R + K + GIY P + +D++ Sbjct: 1126 TRAFEDNIECLKSKFENGIYFNLPKFNDVD-LDKII 1160 >UniRef50_Q03D71 ATP-dependent helicase/nuclease subunit A n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=ADDA_PEDPA Length = 1235 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 235/1280 (18%), Positives = 462/1280 (36%), Gaps = 229/1280 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + ++ ++ V+ LLVVTFTEAA +E++ RI Sbjct: 19 HNILVSASAGSGKTSVLVERVIQKIIN---------GEDVDRLLVVTFTEAAASEMKERI 69 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 R+ I + + E +D L + +++ A + T+H FC + Sbjct: 70 RAAIVK----KINEVSDIELQNHF--------------SMQLNKLNNANISTLHAFCMSI 111 Query: 137 LNLNAFESGMLFEQQLIE-DESLLRYQACADFWRRHCYPLPRE----------------- 178 + + + ++++ ES L ++ R Y + Sbjct: 112 IRNYYYIIDLDPTFRIMDPTESELLKESVWADLREELYERDEDGKFALLTRNFSSDRSDE 171 Query: 179 -IAQVVFETWK------GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIV----- 226 + ++ E ++ PQA L+ I + + + + + L +++ Sbjct: 172 GLQDLILELFEFSNANPDPQAWLQQIAKNYEVPSDNVMDMEFIQQLLTEVKTKLMRIYRK 231 Query: 227 ------------ARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 + +++++ V +L +I+S ++ + + + K+ +A+ Sbjct: 232 DLDLTEQAINGGEPLKNAAEKFQNEVDDLKTIIDS--LNGSW---DDVQQAVSKMK-FAQ 285 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRAL 332 + + +++ D + +Q++A DL+ + Sbjct: 286 LPRGKKEEVQEFNAYAKSIRNDFKDEFNTIADKYFKLSSEQMIAVFKDAHDLMMKLIEVQ 345 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDEFQDTD 390 + E +EK R L F D+ + SE G+ + + +F ++DE+QD + Sbjct: 346 NQFAERFLQEKLTRRSLDFSDLEHFALQIVLDDSEEGQAIRRDFQQKFNEVIVDEYQDIN 405 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY------MKARSEVHAHYTLD 444 P Q I + P + ++GD KQ+IYAFR AD + K + L Sbjct: 406 PLQETILTSVASPDPG-NMFMVGDVKQSIYAFRMADPSLFISKNNQFKDEEQADERIILA 464 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS + + N +F+Q D E+ I + Q + E Q ++ + Sbjct: 465 ENFRSMRNVDDFTNLIFNQVMD----TEVGEIEYDDDAQLQFGAKYYPDEVQNNTEVMIY 520 Query: 505 EGESCGVGDYQST---------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 + + D ++T Q+ A +I+ + R + SDI+ Sbjct: 521 DDSQTDINDKEATPIISNKNDGQLQMIAQRIQKLF--ADHTQIYDKKEQKMRDLEYSDIA 578 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +L + ++ D IP + ++N F+T E M+ LL+ + P ++ L + Sbjct: 579 LLHSTGSNNLEIVDTFKKYGIP-IQVNNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAV 637 Query: 616 LATSMMGLNALDIETLN---NDEHAWDVVV--------------------------EEFD 646 L + M+GL ++ L + H ++ ++ E+ D Sbjct: 638 LRSPMVGLKENELAFLRIGKKNGHYFEALLYFLNEAKLDSNNEFQMQLKTKITHFLEQLD 697 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEH 705 + ++ R+ ++ +L A+ + + G +R ++ + + + + + Sbjct: 698 HFSKLARQSTLVDLLWAIYDETGYLDYVGGMPDGPQRQNNLHALYDRAKGYEESSFKGLF 757 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRV 762 VR++ + D N + + +D V+++TIH SKGLE+P+V+L N Sbjct: 758 QFVRFVEKM---RDKNKDLAENPVVTDVKAVKLMTIHGSKGLEFPIVFLIDAEHGFNTMD 814 Query: 763 QEQAFYHDRH--------SFEAVLDLNAAPES--VDLAEAERLAEDLRLLYVALTRSVWH 812 ++ + DR F L+++ ++ + + + + LAE LR+LYVALTR+ Sbjct: 815 EKGRYVLDRDAGMGITLKDFIHRLEIDTVQKNWIISIKKQKALAEKLRVLYVALTRAEQK 874 Query: 813 CSLGVA-------------------PLVRRRGDKKGDTDVHQSALG-------------- 839 + A L+ K + + Sbjct: 875 LIITGAVNSADDTLNKWAEAVDTDETLIPAEARSKVSNFLDWIGMAIMRVPSVVEKYADY 934 Query: 840 --RLLQKGEPQDAAGLRTCIEALCDDD--IAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 R LQ D L D A ++AQ + Q D K + Sbjct: 935 NTRKLQGTLIPDVELKIINSSELMDQQGLTALKSAQIPELQQLNAFDDIADVDKFKQIMN 994 Query: 896 LPGDNWRVT------SYSGLQQRGHGIAQDLMPRLDVDAAG---------VASVVEEPTL 940 + T S S +++ + + +VDA S++ + Sbjct: 995 FKYHDEAATTTTAYQSVSEIKRVFDDPDKFELNFSEVDADQHIKPQNRFVTESLMAPRFM 1054 Query: 941 TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 P+ A GT H + + LD QP++ +++K+ + + I + Sbjct: 1055 NEATKPKAAEIGTATHLILQQLDLNQPINETIIKDKIGELVMNRVLDEQVANRIR--IST 1112 Query: 1001 PLNETGVSLSQL---SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 L+ L QL N E F L + G P Sbjct: 1113 ILDFFDSDLGQLMINHPENVHREEAFSL------------------LLPAKGLFPKVKGD 1154 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 ++ G ID F E R LLDYK++++ S +Q + + +RY Q LY A Sbjct: 1155 DDVLIHGIIDAYFEMEDRVILLDYKTDFVLPGS---VEQGIEKVI--NRYQGQVNLYAQA 1209 Query: 1118 LHRYLRHRIAD-YDYEHHFG 1136 L L+ + + Y Y G Sbjct: 1210 LGSILKRPVNEKYLYLLSIG 1229 >UniRef50_C0Z545 ATP-dependent nuclease subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z545_BREBN Length = 1275 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 237/1294 (18%), Positives = 455/1294 (35%), Gaps = 241/1294 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R ++ P+ V+ LLVVTFT AA AE+R RI Sbjct: 27 NLLVAAAAGSGKTSVLVERIIRRIMDEKD------PVGVDRLLVVTFTNAAAAEMRHRIG 80 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + D+P + L + A + T+H FC +L Sbjct: 81 DALRKAL-------KDDP--------------HSSHLRRQLALLQRATITTLHSFCLGIL 119 Query: 138 NLNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETWKG------- 189 + + + ++ + E L Q + Y + + G Sbjct: 120 RQYYYLIELDPDFRIADQMEGELLRQDVLEEQLESWYENDADFHALADVMLDGQDDHALT 179 Query: 190 ---------------PQALLRD----INRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 P+ L + + + ++ ++ + A++ Sbjct: 180 LLLLRLYEFSRSHPAPEQWLGEAAGMFAVHDKNGLDGLEWSRSVLRSVELALGGMTAKMR 239 Query: 231 T--VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 + + L+E+ + + +A W + + A +LP K Sbjct: 240 RAVLLAGSPEGPAGYLPLLEAEAAALHRAGAACRAGW--EATVEAVRGVVFAKLPPV--K 295 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP----------LSIRDLVITRALAEIRET 338 + ++++ + + + L E I+Q + P ++ + R + + Sbjct: 296 GTDPLVKEQVQDLRNSVKKELAEQIEQYFSTPAEQYVADLQRIAPHMQTLARLVTAFSDA 355 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDPQ 392 EKR RG + F D+ L + ++ +R +F ++DE+QD + Sbjct: 356 YQLEKRLRGLVDFGDLEHLALRVLTETNESGKTVPSSISTQLREQFAEVLVDEYQDINLV 415 Query: 393 QYRIFRRIWHHQPET---ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA---------- 439 Q I + + ++GD KQ+IY FR A+ +++ Sbjct: 416 QETILQMVSRDGANGQPANRFMVGDVKQSIYRFRLAEPKLFLEKYVTYQKDGDADEACIG 475 Query: 440 -HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 L N+RS +V++VN LF Q EI + P + Q Sbjct: 476 RRIDLAANFRSRREVVDAVNFLFRQIMSH-GVGEIGYDPSAELINRASYPEAQPNRLQAE 534 Query: 499 MKMW------------------------LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 M + + +GES A++ A++IR W++ G+ Sbjct: 535 MHLIDRNTVIADEGQAVVAEATDEGEAGIPDGESAEEASVAQLEARLIASRIRRWMEPGE 594 Query: 535 RGEALL---MNGDDARPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFET 590 E LL RP+ DI +L+R+ Q +++ L IP VY F Sbjct: 595 GEEPLLVFDKKAGGMRPLAYRDIVILLRATSGWGQTMQEELHAAGIP-VYAEQTAGYFAA 653 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND---------------- 634 E + ML LL+ + P ++ L + L + ++GL + + Sbjct: 654 TEVETMLSLLRVIDNPLQDIPLAAVLRSPIVGLREQQLAQIRIHYATGPFHQAVLQYAEE 713 Query: 635 ---EHAWDVVVEEFDGYRQIWR---KRGVM-PMLRALMSARNIAENLLATAGGERRLTDI 687 + +W+ + +F G +WR +RG + +L L + + A G++R ++ Sbjct: 714 RPPQESWEKRLRQFFGRLGLWRTEARRGALSELLTMLYRETGYLDYVAALENGQQRQANL 773 Query: 688 LHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 + + Q +R++ + L+ N + + ++ +V+I+TIHKSKG Sbjct: 774 RALYDRARQYEAGSYRGLFRFLRFVDR--LQEAGNDMGEARTIGENEDVVRIMTIHKSKG 831 Query: 747 LEYPLVWLPFITN----FRVQEQAFYHDRHSF---------EAVLDLNAAPESVDLAEAE 793 LE+P+V++ + ++ Q H F + AA + Sbjct: 832 LEFPVVFVAGMGKQFNTMDLKSQFLLHKDLGFGPMAVEPSMQLRYPSLAALGIRQKLRRD 891 Query: 794 RLAEDLRLLYVALTRSVWHCSL---------GVAPLVRRRGDKKGDTDVHQSALGRLLQK 844 LAE++R+LYVALTR+ L V R+ ++ + A G L Sbjct: 892 MLAEEMRVLYVALTRAREKLILVGSSKDLAKSVTDWGRQDDSERLSDEDLIQAKGYLDWV 951 Query: 845 GEP---QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN- 900 G AGL + D+ W + EL A+ + Sbjct: 952 GRAMLRHPGAGLLRAYPEQQGSGDVVRVRSVPDDSVWSFHFYQADELRAQGESANHEASL 1011 Query: 901 W-RVTSYSGLQQRGHG--IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR---------- 947 W R+T + +R + + + RL + + + R Sbjct: 1012 WERMTRREAIAERPSDDILREIVEKRLGWQDPHPIAPRVAAKWSVSELKRHAKVSKGGQP 1071 Query: 948 ----------------------GASPGTFLHSLFEDLDFTQPVDPNWVREKL-----ELG 980 A GT H +F+ LD +P+D +RE++ Sbjct: 1072 LTLPSITEKPKFLSEQKSNRLTAAEKGTITHLVFQHLDLKRPLDEADIREQVTALAAHRF 1131 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 + Q + V I PL + S + + E+ F L + + ++L Sbjct: 1132 LTDEQVQAVDVPQIARFFADPLGQRMKSAAVVH-----RELPFTLVLPAYEVEAELG--- 1183 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 E + +++G ID + +G L+D+K++W+ ++++A + M Sbjct: 1184 -------------EESDEQVVVQGVIDCLLEEPDGSLVLIDFKTDWMAKEATAVAMEEMK 1230 Query: 1100 AAMQAHRYDLQYQLYTLALHRYL--RHRIADYDY 1131 RY+ Q +LY A+ + + + ++ Y Y Sbjct: 1231 R-----RYEGQIRLYVRAIKQIIKPKGNVSSYLY 1259 >UniRef50_B2A610 ATP-dependent helicase/nuclease subunit A n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=ADDA_NATTJ Length = 1282 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 231/1281 (18%), Positives = 467/1281 (36%), Gaps = 227/1281 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ A AG GKT + + L+ LTV LLVVTFTE A E+R RI Sbjct: 25 HHILVSAGAGAGKTAVLVQRIISKLIDPHDD------LTVNGLLVVTFTEKAANEMRDRI 78 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 EL+ A ++ ++ L +++A + T+H FC + Sbjct: 79 A---RELKKALSQDPEND------------------HLKKQLYLLNKANISTLHSFCLEI 117 Query: 137 LNLNAFESGMLFEQQLI-EDESLLRYQACADFWRRHCYPLPREIAQVVFETW---KGPQA 192 L + + + E + L Q+ D + Y L + ++ +++ K + Sbjct: 118 LRHYFYYLDIDPAFSVASEYDVELLRQSVIDNYLEEEYGLGEQSFYLLVDSYGGDKNDEK 177 Query: 193 LLRDI-------------NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV------- 232 L + I ++LQ + DD T + +I I+T+ Sbjct: 178 LKKMILTLHRFSRSHPRPRKWLQSVKDHFEVSTDDDLTNTVYYLEIQKDIETLFKQCINY 237 Query: 233 -----------------KQQWRDAVGELDAL------IESSGIDRRKFNRSNQAKWIDKI 269 + + + ++ +E+ D F K+ Sbjct: 238 FKRALQTSEQPGGPYQYAETLLEEIEQVQNFTQQLVEVENHSFDWNSFAERVAGFKFSKL 297 Query: 270 SAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV-- 327 + ++ + + E L+K ++ + K + ++ + D+LL + + L+ Sbjct: 298 PSVSKND----DVDEDLKKDCKKLRDHGKKTFQKLVQNYFTRSKDELLRDLQQLSPLMNK 353 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQ 387 + + + + K++RG + F D+ + L + + + + R+ M+DE+Q Sbjct: 354 LIDMVINMDDKYEEVKKQRGIMDFSDLEHYVYELL--DQYPEIVSELHQRYDEVMVDEYQ 411 Query: 388 DTDPQQYRIFRRIWHHQP-ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------ 440 D + Q I ++ Q L ++GD KQ+IY FR A+ ++ Sbjct: 412 DINQVQNAILEKLTGQQSISPDLFMVGDVKQSIYRFRLAEPELFLNKYDTFDQRSEEGSL 471 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-----REIPFIPVKSAGK-------NQALR 488 L N+RS+P ++ SVN LFS+ + ++ IP + N+ + Sbjct: 472 IELQENFRSSPMVLESVNYLFSRIMTGSLSGIEYNEKVKLIPASKPRELYLNEDDNEDDK 531 Query: 489 FVFKGETQPAM-----KMWLMEGESCGVGDYQ-STMAQVCAAQIRDWLQAGQRGEALLMN 542 + + E + + ++ L+E + + AQ+ A I ++ R + Sbjct: 532 YEGQAENENQVIDGRTEVHLLENKDTNSREEDTEREAQLIATTINSLVEEEYR--IYDRD 589 Query: 543 GDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 DD R + SD +L R ++++A V + +P +Y F E Q ML LL+ Sbjct: 590 LDDYRKLDYSDFVILSRKTKEQAELVTNVFQEHGVP-LYAELDTGYFAAQEVQVMLSLLK 648 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD---------------------- 639 + P ++ L L + ++GL++ ++ + D Sbjct: 649 IIDNPRQDIPLAGVLRSPLVGLDSNELVEIRRSNPGTDYYEACKRVLTNSIEQQNQCSEK 708 Query: 640 ------VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 + + +R+I R+R + ++ + + + + GG R ++ + Sbjct: 709 TIQKMQKFFSQLERWRRISRERSLAELIWDIYQITDYLDYVAGFPGGRERQANLWSFYDR 768 Query: 694 LQEAGTQLESEHALVRWLS--QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 + + S LV++L+ + ++E D + + + ++++V++++IHKSKGLE+P+ Sbjct: 769 ALQFDSF--SHSGLVKFLNFIEKLVEQDFDLG-KARTVSENENVVRLMSIHKSKGLEFPV 825 Query: 752 VWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE-----------------AER 794 V++ + N F + DL P+ VDL E Sbjct: 826 VFVMGLGNNF----NFNDQKGDLLLHKDLGLGPKLVDLTNRIKYPTIAHQAIKGSLGRET 881 Query: 795 LAEDLRLLYVALTRSVWHCSL-GVAPLVRRRGDKKGDTDVHQ-------------SALGR 840 LAE++R+LYVA+TR+ L G + + + Q S L Sbjct: 882 LAEEMRILYVAMTRAEEKLFLVGSGKDIESKISVPEEPAAAQNYLDWIYPQLGEDSELFH 941 Query: 841 LLQKGEPQDAAG------LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 + P G ++ E+L W+ Q + + + + + Sbjct: 942 KIWNDIPGQQDGKSVEYNWKSYFESLLSQTFTWEVDQEEFEDQKRTLEQAISYSYPYNIA 1001 Query: 895 RLPGDNWRVT------------------SYSGLQQRGHGIAQDLMPR-LDVDAAGVASVV 935 VT S S +Q +A +P L+ + Sbjct: 1002 TEIVGKMSVTDLAKSDTYIDSKIVSQNQSLSSVQDHYKKLAATQIPMFLETTEDAGDNKY 1061 Query: 936 E------EPTLTPHQFPR-----GASPGTFLHSLFEDLD-FTQPVDPNWVREKLELGGFE 983 E P+ P GA GT +H F+ L + + E++ + Sbjct: 1062 ESYKEHHTPSKRPEFLKSNSGLTGAEAGTSIHLAFQHLPINSDLNSQEFSEEQISNQLDD 1121 Query: 984 SQWEPVLTEWITAVLQAPLNETGVS--LSQL---SARNKQVEMEFYLPISEPLIASQLDT 1038 + ++T+ V+ L L Q + + E+ F L + + + + Sbjct: 1122 LVNKEIITQAQRDVISEDLIMKFFQSELGQAILERPKGLKRELPFTLGVPAWEMLAGSEE 1181 Query: 1039 LIRQFDPLSAGCPPLE-FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 + + + L+ +++G ID +F YYL+D+K++ L + ++ Sbjct: 1182 CQAELEAENIETTELQGLSDETVVIQGVIDYLFWDGTNYYLIDFKTDKLNTSNMDEIEKR 1241 Query: 1098 MAAAMQAHRYDLQYQLYTLAL 1118 + +Y +Q Q+Y A+ Sbjct: 1242 LQG-----KYRMQIQMYLRAI 1257 >UniRef50_Q03NA7 ATP-dependent helicase/nuclease subunit A n=1 Tax=Lactobacillus brevis ATCC 367 RepID=ADDA_LACBA Length = 1262 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 235/1285 (18%), Positives = 442/1285 (34%), Gaps = 224/1285 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + L + ++++L+VTFT+AA AE+R RI+ Sbjct: 21 NLLVSASAGSGKTRVLVQRVIERL---------KTGVGIDQILIVTFTKAAAAEMRERIQ 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + ++ Y L Q+ A + T+ FC R+L Sbjct: 72 TALRQELAVSQGDSAQQQFY-----------------LRQLNQLPVADISTLDAFCLRLL 114 Query: 138 NLNAFESGMLFEQQLIEDESL---LRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 + + +L+ DE+ LR + AD R Y Sbjct: 115 QRYYYVIDLDPVFRLLADETENGLLRDEVWAD-LREDLYANDDSGLFARLTENFSGDRND 173 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV------KQQWR----------- 237 + + +Q A P LA D + +Q+ R Sbjct: 174 QGLADLVQQTYTFANATPNPTAWLAELPQPYQLDSDQLMTTSFYQQRLRPFFQSQLQQLQ 233 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 + AL +G+D++ + + + + + ++ + L +++ F+ + Sbjct: 234 ADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWN-ALRAAIQDFAWGRMPAV 292 Query: 298 TKAGGETP---------RHPLFEAIDQLLAEPLSIRDLV--------------ITRALAE 334 K + P P + +D L L + ++R + Sbjct: 293 RKTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTA 352 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGE--VLAAAIRTRFPVAMIDEFQDTDPQ 392 R +EK+RR L F D+ + L +S + +AA +R +F M+DE+QDT+ Sbjct: 353 FRTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGL 412 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YTLDTN 446 Q I I P+ L ++GD KQ+IY FR AD +M + A L N Sbjct: 413 QEAILTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGELIVLAEN 472 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG--ETQPAMKMWLM 504 +RS + + N +F Q D RE+ I A + + + + + ++L Sbjct: 473 FRSMKNVDDFTNLIFKQLMD----RELGEIDYTGAAQLKFGASYYPDTVTSTAELLVYLT 528 Query: 505 EG--ESCGVGDYQSTMA--QVCAAQIRDWLQAGQRGEALLMN--------GDDARPVRAS 552 E ES G D ++ A QV + L GQ+ + L+ + RP+ Sbjct: 529 EDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQVRPMTYG 588 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 DI++L +R + D L L IP V +++ + F+T E Q M+ LLQ + P ++ L Sbjct: 589 DITLLTPTRTNNLIITDELRRLGIP-VVVNDARNYFKTTEIQIMMALLQIIDNPYQDIPL 647 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDV-----------------------------VVE 643 + L + ++GLN ++ L ++ D +E Sbjct: 648 AAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQAVYQKVSHFLE 707 Query: 644 EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLE 702 + +R I ++ ++ ++ + + + GE+R ++ + E + + + Sbjct: 708 QLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKSYEQSSFK 767 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---N 759 VR++ + D A + +++ V ++TIH SKGLE+P+V++ + N Sbjct: 768 GLFQFVRFVERLQERDDDLAGA---PVQAADDAVSVMTIHGSKGLEFPVVFIMDASRQFN 824 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPE----------SVDLAEAERLAEDLRLLYVALTRS 809 + Q+ + + + L+ + LAE++R LYVALTR+ Sbjct: 825 KQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKLYVALTRA 884 Query: 810 VWHCSL------------GVAPLVRRRGDKKGDTDVHQSALGRLL--------------- 842 + + T ++ L L Sbjct: 885 ESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLVRDPKFAA 944 Query: 843 --------QKGEPQDAAGLRTCI---------EALCDDDIAWQTAQTGDNQPWQVNDVST 885 G D A + + + + W A + V T Sbjct: 945 ELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKVTTPPVDT 1004 Query: 886 AELNAKTLQRLPGD-NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ 944 +L+ R P T+Y + + + A V H Sbjct: 1005 EQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGGHRFVTHD 1064 Query: 945 F-----------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW 993 F P G+ H + + LD T + V+ ++ + + + Sbjct: 1065 FARPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLDRVQGVIDQLVADQVLTAEVAQR 1124 Query: 994 IT-AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP 1052 I ++ + + + E+ F L + P + Sbjct: 1125 IQPELILRFFSSSVGQQVLAAPDQLHREVPFSLLM-----------------PARSLFQD 1167 Query: 1053 LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 + + ++ G ID L DYK++ + + A + + + RY Q Sbjct: 1168 FQETDSQVLVHGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVE-----RYGGQVN 1222 Query: 1113 LYTLALHRYLRHR-IADYDYEHHFG 1136 LY AL + + Y Y G Sbjct: 1223 LYAAALKQMTGQPIVGQYLYLLAIG 1247 >UniRef50_A8VW69 Phospholipase D/Transphosphatidylase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW69_9BACI Length = 1244 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 209/1246 (16%), Positives = 431/1246 (34%), Gaps = 200/1246 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R + P ++ LL+VTFT AA E+R RI Sbjct: 26 NLLVAAAAGSGKTAVLVERIIRKITDE------ENPADLDRLLIVTFTNAAAQEMRHRIG 79 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + +I ++ ++ L + +A + T+H FC ++ Sbjct: 80 EALED--------------------KISEQPRSLH-LRRQLNLLHKAPISTLHSFCMSIV 118 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRH--------CYPL---------PRE 178 + + + +++++ LLR + + + Y + Sbjct: 119 RDFYYVTDIDPSFRILDETEGVLLRDEVLEELFEEAYSSKNPDGFYDMVERFSNDRSDEG 178 Query: 179 IAQVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 + QV+ + P L+ P + L + +++ + Sbjct: 179 LKQVLLAVYHFSLSHPKPFEWLQYAASLYDKAGSGDVFELPWFDELTGIVKENLSQSVSF 238 Query: 233 KQQWRDAVGELDALIESSGI-------DRRKFNRSNQAKWIDKISA----WAEEETNSYQ 281 + + + + + ID++S+ + + + Sbjct: 239 LSEALQLIDSHEGFEPYRDAVAFELDQAKNILETDHPGTAIDRLSSVTFPRLKPLSKKVE 298 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEIRETV 339 +++ ++ + K ++ ++D L + ++ + V + + + + Sbjct: 299 FDPEIQEKIKQLRDKAKKTVDDSRSAYALNSLDDALNDLGALAEPVRELAKTIQRFEKKY 358 Query: 340 AREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 A +KR +G + F D+ L S GE +A F M DE+QDT+ Q I Sbjct: 359 AIKKREKGVVDFSDLEHFALKILTSSLKGEPIANQYSNYFQEVMTDEYQDTNRVQEAILS 418 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDTNWRSAP 451 ++ + ++GD KQ+IY FR A+ ++ + L N+RS Sbjct: 419 QVSNSSNR---FMVGDIKQSIYRFRLAEPGIFLDKYRRYTSDGSGEGMVIDLSMNFRSRD 475 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA-----------LRFVFKGETQPAMK 500 ++++VN +F QT D + EI + S ++ V E + + Sbjct: 476 EILSAVNYVFRQTMDERVG-EIRYDDAASLVTGNHRFPEVFSPLVHVQLVNVAENESETE 534 Query: 501 MWLMEGESCGVGDYQSTMAQVCAA-QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 + + AQ A I + + RPV DI +LVR Sbjct: 535 PHQTPDSDSDEKEQDLSAAQAEARSMIASIKSMTESSSVFDPSTGHERPVSYRDIVILVR 594 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 S A + IP Y + F +E Q M+ LL+ + P+++ L S L + Sbjct: 595 SMTWADTFMEEFKAAGIPM-YADLSNGYFTAIEVQIMIALLKIIDNPKQDVPLASVLRSP 653 Query: 620 MMGLNALDIETLNNDEHAWD------------------------VVVEEFDGYRQIWRKR 655 ++GL+A ++ + D + D + + D +R R Sbjct: 654 IVGLSADEMAEIRIDLPSSDFFSAIHHYADQDQVENESLQIKVKSFLTKLDEWRSSARST 713 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQH 714 + ++ L + GG++R ++ + + + T + + ++++ Sbjct: 714 ALSSLIWKLYRDTGYYDYAGGMPGGKQRQANLKALYDRAKAYEKTSFRGLYRFLSFIAKM 773 Query: 715 ILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHD 770 D ++ + + +V+++TIHKSKGLE+P+V++P I +++ H Sbjct: 774 QERGDDLGEARA--IGEQEDVVRLMTIHKSKGLEFPIVFIPGINREFNQMDLRKSYLMHQ 831 Query: 771 RHSF---------EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL-GVAPL 820 +H F + +++ E LAE++R+LYVA+TR+ L G Sbjct: 832 KHGFGTQWFDPELRVLYPSVQHELMKEISRREMLAEEMRVLYVAMTRAKEQLHLIGSGKN 891 Query: 821 VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD----------DIAWQTA 870 + + +K + + L + Q+ + A D DI + Sbjct: 892 LPDQLEKWVNAGDDEGPLIPVPQRLRSKRYADWIIPAIGRHPDIQQCLRDQTADIPIPST 951 Query: 871 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV------------------------TSY 906 D W + + +L P + + SY Sbjct: 952 ILDDRSKWSMTLTQSTDLPQYVGDLQPEQHTIIDQLAKGAPVKSDPALDLEVKERFEWSY 1011 Query: 907 S---GLQQRGHGIAQDLMPRLDVDAAGV-------ASVVEEPTLTPHQFPRGASPGTFLH 956 + Q +L LD D E P + + A GT +H Sbjct: 1012 AHKEATQYLAKQTVSELKQTLDSDYGSDDFVRHFTPDFAERPAFMQQKKLKPAEKGTLVH 1071 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW-ITAVLQAPLNETGVSLSQLSAR 1015 + + ++ Q + + + + + + + + ETG + + Sbjct: 1072 LVMQLVNLKQTSNKEIQAQLKQWVNEDRLTHEEADQLPVEQIARFFQTETGAEMKEAKLV 1131 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF-MQVRGMLKGFIDLVFRH-E 1073 + E+ F P+ P E ++G +D +++ + Sbjct: 1132 WR--ELPFSFEA-----------------PVKMAYPDWEGPSDEHVFIQGMVDALYQSND 1172 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 G L+DYK++ + E A+ A +RY Q +LY+ A+ Sbjct: 1173 GELVLVDYKTDRIPEHLQD--DSAIGAYFI-NRYQTQIKLYSAAIK 1215 >UniRef50_B0NWV2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NWV2_9CLOT Length = 1188 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 231/1228 (18%), Positives = 437/1228 (35%), Gaps = 186/1228 (15%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + ++ + P+ V+ LLVVTFT+AA E++ RI + Sbjct: 19 LVSAAAGSGKTAVLVERIIQKITDE------KHPIDVDHLLVVTFTKAAAGEMKERIMAA 72 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + E + E + L L + +A + TIH FC ++ Sbjct: 73 LDEK-----------------VREFPGNQHFVKQLSL----IHKAQITTIHSFCMNLIRD 111 Query: 140 NAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFETWKGP-QALLRD 196 + G+ ++ S +R + D + ++ G ++ + Sbjct: 112 YFYVLGIDPNTAPGDEGRLSAIRKEILDDLLEEAYEKKEEDFINLIESYSPGKNDNIISE 171 Query: 197 INRYLQGEAPVIKAPPPDDETLASRHA-QIVARIDTV---KQQWRDAV-------GELDA 245 L A + P + + + + + D K RDA + Sbjct: 172 YILKLYENARSHREPEKWLDQAENNISVETKEQFDQAPFMKIILRDARFSIDGAYDTIQE 231 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 +E + + + +I +E +L ES K + L R K E Sbjct: 232 ALELALSPGGPYFYEKTLRKDLEIIIKIKEAQTFSELCESFVKMEKPRLSGRKKKTDEID 291 Query: 306 ----------RHPLFEAIDQLLAEPLSIRDLVITRALAEIRE--------------TVAR 341 R+ + +D L A + I L I+ Sbjct: 292 EMLQDQCKYERNQAYNLLDDLKAAYFYENESEIFHELRRIKSPLKGLIDLTRKFMIRYDE 351 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEV-------LAAAIRTRFPVAMIDEFQDTDPQQY 394 +K+ + FDDM L E +A + IDE+QD++ Q Sbjct: 352 KKKNENIMDFDDMEHFALELLIDHYDEEGNPVPSKIAREKSDGYEEIYIDEYQDSNYIQD 411 Query: 395 RIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YTLDTNW 447 I R + + + ++GD KQ+IY+FR A +++ L N+ Sbjct: 412 AILRSVSKESEGGHNMFMVGDVKQSIYSFRLARPELFLEKYHGYQQKGEEYQLIELRNNF 471 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPV-KSAGKNQALRFVFKGETQPAMKMWLMEG 506 RS ++ VN +F Q M ++ I ++ + F + Q + + Sbjct: 472 RSRSEVLTFVNDVFYQ----IMHEDLGNIEYTQNVALVPTMEFEQGCDAQTELLLLESNE 527 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD---ARPVRASDISVLVRSR-Q 562 D A++ A +I + + + + R + SDI +L+RS Sbjct: 528 VKDSEEDAVILEARMIATRIHEMIDGEDPMMVTGKDEEGNMILRKAKYSDIVILLRSMKT 587 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 A ++ L IP+ + +N+ F+T+E + +L LL V + L + L + M+G Sbjct: 588 NAEVIQKELMNAGIPA-FANNQKGYFDTVEIRTLLSLLSVVDNIYMDIDLAAVLRSPMIG 646 Query: 623 LNALDIETLNND---EHAWDVV-------------VEEFDGYRQIWRKRGVMPMLRALMS 666 ++ ++ L D + ++ + +E D R + ++ + Sbjct: 647 MSEEELGRLKVDGEKDSLYECLCETKDKMEKSKKALELLDLLRDAKTYLPLTQLIWLALE 706 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQ 725 A G++R +IL + E + +Q++ VR++ Q E D + Sbjct: 707 KSGYYHYAGAMPQGKKRQGNILMLVEQAKAFESSQIKGLFHFVRFIEQ-CREYDMDYGE- 764 Query: 726 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEAVLDLNA 782 + D+ LV+I +IHKSKGLEYP+V++ I N R + F ++ Sbjct: 765 ANTMSEDQDLVRISSIHKSKGLEYPIVFVSKIHQKFNLRDGNGSMIFHGDYFIGADHIDP 824 Query: 783 APESV----------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 + + E L E+LR+LYVA+TR+ L ++ D + Sbjct: 825 VYRTRKKTILKNLIKNQMTRESLGEELRVLYVAMTRAKEKLILT----GIKKDDIDWNAK 880 Query: 833 VHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 +A+ RL + ++ + + D + D Q + E+N + Sbjct: 881 GEVTAIDRLSGRSY---FDWIKKALPMIPKQDYRLKIYTLEDLLWQQEGNELLHEMNRQI 937 Query: 893 LQRLPGDNW-------RVTSYSGLQQRGHGI----------AQDLMPRLDVDAAGVASVV 935 D S++ + + + D + +SV Sbjct: 938 FYERLNDQIPNENVKALKESFAYHYRNEAETKGRLKYSVSEIKRMSQAADTEEVMYSSVF 997 Query: 936 EEPTLTPHQFPR------GASPGTFLHSLFEDLDFTQPVDPNWVREKLEL----GGFESQ 985 E F + AS GT +H +FE LDF++ + E +E G + + Sbjct: 998 MEKEKRIPSFVKKTERISAASKGTIIHKVFELLDFSKDYTMKSLNEDIERWISLGKLKKE 1057 Query: 986 WEPVL-TEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 +E V+ + I A+ ++ L + +Q K+ + +P S+ ++ D + Sbjct: 1058 YEKVIYRKEILALTRSELGKRMKEAAQKKLLYKERQFVTGIPFSDMDKEAKTDDFV---- 1113 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 +++G ID+ F E + L+DYK++ + E + Sbjct: 1114 ----------------VVQGIIDVYFEEEDKIILVDYKTDRVREGEED---------ILI 1148 Query: 1105 HRYDLQYQLYTLALHRYLRHRIAD-YDY 1131 RY Q + Y AL + + + Y Y Sbjct: 1149 RRYRAQMESYQQALEKITGKCVKEIYIY 1176 >UniRef50_A8U8N0 Exonuclease RexA n=3 Tax=Lactobacillales RepID=A8U8N0_9LACT Length = 1267 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 229/1291 (17%), Positives = 453/1291 (35%), Gaps = 245/1291 (18%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + + V+E+L+VT+TEAA E++ RI Sbjct: 27 HNILVSASAGSGKTTVLVQRVI---------EKIKAGTNVDEMLIVTYTEAAAKEMKARI 77 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + I E + + + + L +++A++ T+H FC ++ Sbjct: 78 QVAIQESVTS------------------ESDMELKRHLTRQVTLINQASISTLHAFCLQV 119 Query: 137 LNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKG----- 189 + + + +L+ DE+ L ++ + R Y + + + ++ Sbjct: 120 IRRYYYLINLDPIFRLLTDETEILLLKESVWEDVREELYGEEDTLFKSLTASYSNDRSDA 179 Query: 190 ------------------PQALLRDINRYLQGE--------------APVIKAPPPDDET 217 P+A L ++ Q E P I + Sbjct: 180 GLTDLIFSLYEFSRANPRPEAWLEQLSYLYQVEGNDLTNGVLFKELLKPQILSVLDSLVE 239 Query: 218 LASRHAQIVARIDTVKQQWRDAVGELDALIE-SSGIDRRKFNRSNQAKWIDKISAW-AEE 275 L+ AQ+ + +++Q E AL E I+ + + + S W A + Sbjct: 240 LSQTAAQLGEGCEELQKQTALVRIEWTALQEIQLAINENDYQTAYNYSKQFEFSRWNAVK 299 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF-----EAIDQLLAEPLSIRDLVITR 330 + + E+ E+ + L D+ K + + F E ID +L + ++ R Sbjct: 300 KGTDEAIKETAEEM--KLLRDQYKNRFKELTNDYFSASPQEQIDLMLNAAPLVEEM--AR 355 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSAL-----RSESGEVLAAAIRTRFPVAMIDE 385 + + K R L F+D+ L + + R +F M+DE Sbjct: 356 VTQLFTDAYRQRKDERNLLDFNDLEHLTLQILAQFKKQDWVPTEASMHYRDKFKEVMVDE 415 Query: 386 FQDTDPQQYRIFRRIWHHQ-PETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH---- 440 +QD + Q I R + H Q + L ++GD KQ+IY+FR AD ++K + H Sbjct: 416 YQDINQLQENILRWLAHDQSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQYGHHQSGE 475 Query: 441 -YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM 499 L N+RS ++ N +F Q D + + + A + F + Sbjct: 476 RIILAENFRSRGEVLQFTNLIFEQLMD----KAVGQMDYDEAAQLVQGFSGFPALQKHHP 531 Query: 500 KMWLME----------------GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 ++ + E + D + +I++ +Q + Sbjct: 532 ELLIYEKGTTDSEEDSEETESVNWDMRIEDKTEGELLMVGQKIQELIQT--QFPIYDKRS 589 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RP+R DI +L +++ + + L IP + +++ + F+T E M+ LL+ + Sbjct: 590 KTTRPIRYKDIVLLTPTKKNNLVLMEMFKRLSIP-LQVNDTQNYFQTTEITIMMSLLKVI 648 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHA-------------------------- 637 P ++ L + L + ++GL+ ++ ++ + Sbjct: 649 DNPYQDIPLAAVLRSPIVGLDENELASIRISQKTGDYYDALKTFYQTYPGIEKASRFTTN 708 Query: 638 ----WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE- 692 DV++ + +R++ R+ ++ ++ A+ + + G++R ++ + E Sbjct: 709 LYGKIDVLLTRLNKWRELARRDHLVALIWAIYDDTGFLDYVGGMNSGKQRKANLHALYER 768 Query: 693 LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 T + VR++ + + E D + + + D+ V+++TIH SKGLE+P+V Sbjct: 769 AASYEKTSFKGLFQFVRFIEK-MQEKDKDLAEPTA-ISEDEDAVRVMTIHASKGLEFPVV 826 Query: 753 WLPFITN-FRVQEQAFYH----------DRHSFEAVLDLNAAPESVDLAEAER--LAEDL 799 ++ +T F +Q+ + D E + + PE+ E + L+E++ Sbjct: 827 FVLDLTKKFNLQDIKKSYVFNEQYGVGTDYKDLERRIRYPSLPETALKVEKKTKLLSEEM 886 Query: 800 RLLYVALTRSVWHC----------------------------------------SLGVAP 819 R LYVALTR+ +G+A Sbjct: 887 RKLYVALTRAEEKLFLVGSYKNEEAAWKEWGVVSSHTPTVLPADIRFTSGSLMKWIGLAL 946 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT--AQTGDNQP 877 + + + + ++ E L D+ + D Q Sbjct: 947 VRHPSSENEFTSFTARNGTITNHSAHFAVHFYDESVIQEQLISKDVDLDENWLEKLDEQQ 1006 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWR------VTSY---SGLQQRGHGIAQDLMPRLDVDA 928 + + + L + TSY S +++ D M ++DV Sbjct: 1007 EKTPTDESTHQTVQKALALMNYTYEHEGASHTTSYQSVSEIKRLFEEPDSDQMVKIDVSQ 1066 Query: 929 A-----GVASVVEEPTL-TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE---L 979 V ++ P T P A GT HS+ + +D + + Sbjct: 1067 PRNRNRYVEDSLDRPLFMTELTVPSNAEIGTATHSVMQAVDLATKPTKESLEALIASLIK 1126 Query: 980 GGF--ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 G E V + PL + S + E F L + I + ++ Sbjct: 1127 AGVLKEEVASKVNVGQLVQFFATPLGNMILDYS----KEVHREEPFSLLLEAEKIFTDMN 1182 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 + + + G++ G+I+L E L DYK++ + S Y QA Sbjct: 1183 ------------GDAEDKILIHGIIDGYIEL----EDHIILFDYKTDRV----SHYGAQA 1222 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 M +Y Q LY AL L ++ + Sbjct: 1223 -GKNMLE-KYKGQMNLYRSALESILNKKVTE 1251 >UniRef50_C4L3Q8 Recombination helicase AddA n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Q8_EXISA Length = 1205 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 246/1240 (19%), Positives = 454/1240 (36%), Gaps = 203/1240 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + LL LT + +LVVTFT AA AE++ RI Sbjct: 19 HVLVSAAAGSGKTAVLVERLSSRLLDETDE------LTADRMLVVTFTNAAAAEMKRRIA 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E D+P E + ++ + ++ A + TIH FC ++ Sbjct: 73 KALEEALR-------DDPTNEYVRKQ--------------RQMLNRALITTIHSFCLEVI 111 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACA--------------DFWR-RHCYPLPR---EI 179 N + + ++ E+ L+ Q DF+ Y R EI Sbjct: 112 RENYYLLDLDPAFKIAEERDLVLLQDDVLEEVLEEEYGKQDTDFFALVDAYTSDRGDSEI 171 Query: 180 AQVVF------ETWKGPQALL-RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 ++ T P A L + ++ Y GE PD+E + Q++ + Sbjct: 172 EDLILGLYHYARTLPNPDAYLDKLVSMYTFGE-------DPDEEAILIEFGQML--WHDI 222 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA----WAEEETNSY-----QLP 283 ++ RD + +L+A + +G + + N +++ W+E ET + + Sbjct: 223 EKAVRD-LRKLEAELRVAGYEPQSENIRQAIFPFEQLEGETIVWSELETAARAMKFGTMK 281 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---------ITRALAE 334 +K + + K + + L A++Q + + V + R + Sbjct: 282 AVPKKEEHQIYHEVLKPAYDQAKKKLTAAVEQARVSGADLLESVSMQQPLVETLVRTVRA 341 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTDPQQ 393 + + KR R + F D+ + LR + G +AA + RF ++DE+QDT+ Q Sbjct: 342 FGQAYEQAKRDRAFVDFSDLEHYALAILRQDGGPSDVAALYKERFAEVLVDEYQDTNEIQ 401 Query: 394 YRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTLDTNW 447 I + + + E L ++GD KQ+IY FR A+ ++ + L N+ Sbjct: 402 ETIINLVANEREEIGNLFMVGDIKQSIYRFRHAEPGLFIDKATRFRQANTGKRIDLSQNF 461 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 RS ++ +N LF Q D E+ I A + R + E PA +++ Sbjct: 462 RSRSEVLYGINDLFVQLMD----EEVGEIAYDEAAQLVPGR---EYEPIPADPEFILVDG 514 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-AAQ 566 + Q + A +I + + + + + R DI +LVRS++E Q Sbjct: 515 ASRELSKQEVEGRAIATRILELVSGDEPFKVTDESTGQLRNCEYRDIVILVRSKKERVEQ 574 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 + D LT IP+ Y + F+ E + +L LL+ + P ++ L AL + M + Sbjct: 575 LMDILTQYNIPA-YTDSDGGYFQATEIRMILALLKVIDNPLQDIPLAGALRSPMFRFDDG 633 Query: 627 DIE--TLNNDEHAWDVV-----------------VEEFDGYRQIWRKRGVMPMLRALMSA 667 ++ L +++ ++ + ++ +R R + +++ L + Sbjct: 634 ELARIRLESEDSFYEALKAKADDDDELGVKCGEMLDRLSRWRTYARNHSLSELIQQLFND 693 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLS-QHILEPDSNASSQQ 726 + GG+ R ++ + + + + L R+L L+ S+ Sbjct: 694 TGFYDFSGGLPGGKGRQENLKALYD--RALAYERSGYRGLYRFLRVMDRLQDTGEDLSEA 751 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF----RVQEQAFYHDRHSFEA-VLDLN 781 L ++++V+I+T+HKSKGLE+P+ + + ++ +H ++ +D+ Sbjct: 752 RSLGDEENVVRIMTVHKSKGLEFPVTIVAQLGKQFNKRDQMQRVIFHKQYGISLDAIDVV 811 Query: 782 AAPESVDLAE--------AERLAEDLRLLYVALTRSVWHCSL------------------ 815 +S + A AE++R+LYVALTR+ L Sbjct: 812 TRTKSETFVKEMIRRDLDATMKAEEMRVLYVALTRAKEKLILVGTVGEPLKHLQQWLQVG 871 Query: 816 --GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 873 G R + K D AL RL ++ G ++ Sbjct: 872 QSGDLLASEARREAKTYLDWIAPALLRLPSATSFIESFGFTVPSTFQESTSWIYRVIGEA 931 Query: 874 D-----------NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS-----GLQQRGHGIA 917 D Q V + + + R +Y ++ Sbjct: 932 DLAEIATLQEMMAQLHHVQRFEAIDFPIQNEEETIRAVKRALTYEYPARDAVRTAAKQTV 991 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPR-------GASPGTFLHSLFEDLDFTQPVDP 970 +L + ++ A V P TP++ P+ GA GT LH +F+ D QP+ Sbjct: 992 TELKRAMQLEQAAFEDPV-RPIDTPYREPKWRQVKQTGAERGTTLHLIFQLADPNQPIVD 1050 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQ-LSARNKQVEMEFYLPISE 1029 + +++ G I + E G +L+ L E+ F + Sbjct: 1051 QINQWEMQ-GMLSPVEAETARLAIPDIEMFFQTEVGQALADALERGTAWRELPFTYTV-- 1107 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN---WL 1086 P P F +++G ID ++ Y LLDYKS+ L Sbjct: 1108 ---------------PAERVNPDGHFTDEHVLIQGIIDCLYFDGDSYVLLDYKSDAVTHL 1152 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 + A RY +Q QLY A+ R+ Sbjct: 1153 SDSRED------AHERLRERYAIQLQLYREAIETIWNIRV 1186 >UniRef50_B9DZK4 ATP-dependent helicase/nuclease subunit A n=13 Tax=Clostridia RepID=ADDA_CLOK1 Length = 1238 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 211/1260 (16%), Positives = 441/1260 (35%), Gaps = 217/1260 (17%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A AGTGKT + L+ ++ + +++LLVVTFT AA +E++ R Sbjct: 20 NCNLLVAAGAGTGKTAVLVERILQKVINDSEE------VDIDKLLVVTFTNAAASEMKER 73 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 + + +L + ++ L ++++ + TIH FC + Sbjct: 74 VGEALSKLL---------------------ELNCTSKNLQRQLALLNQSNIMTIHSFCLK 112 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ N + ++ +D LL+ A + + + + Sbjct: 113 VIKNNFHRIDLDPNFRICDDTESKLLKQDALLELFEEKYEEENLGFLNLADGYGGKNDSK 172 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGID 253 L+DI L + P + + + + D +W + +E G Sbjct: 173 LQDIVLSLYEFSQGSPWPKRWLQDVLKDF-NLGSDFDFGDTKWAKVLMHNVT-VELKGCK 230 Query: 254 RRKFNRSNQAKWIDKISAWAEEETNSYQLPE------SLEKFSQRFLEDRTKAGGETPRH 307 + N N + I+ + + E + + + + ++ F++ Sbjct: 231 NKMKNILNTIENIEGLEHYLEPFKSDIESIDKLINITTWDEIRDEFIKLSFNKLPSKRTD 290 Query: 308 PLFEAI--------DQLLAEPLSIRDLV--------------------ITRALAEIRETV 339 PL ++ D++ + +SIR+ + +T + + E Sbjct: 291 PLVKSYKDKARNTRDEVKKKLISIREDIILCTDDIYENFKEVYPLMKSLTFLVMDFYEKY 350 Query: 340 AREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 +K R + F+D+ L S+ A R F IDE+QD++ Q Sbjct: 351 HNKKSERNMIDFNDIEHFCLEILTSKDKNGDIIPSEAALEYREYFEEIFIDEYQDSNEVQ 410 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------AHYTLDTN 446 I I L ++GD KQ+IY FR A +++ + L N Sbjct: 411 EVIMNMISRKNIYANLFMVGDVKQSIYRFRQARPELFLEKYNSYDEKEGSKNRKIKLSEN 470 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG--KNQALRFVFKGETQPAMKMWLM 504 +RS +++++N +F Q M RE+ + K+ A F+G +++ ++ Sbjct: 471 FRSRKEIIDAINYIFKQ----IMCREVGELDYGEEECLKSSARYEPFEGNCGGDVELHVV 526 Query: 505 EGESCGVGDYQ----------STMAQVCAAQIRDWLQAGQRG---EALLMNGDDARPVRA 551 + + S A++ A++I + + + D+ R + Sbjct: 527 DKKENENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYDKEIDNYRSIMY 586 Query: 552 SDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 DI +L+R ++ A + L IP V+ F+ +E + ++ LLQ + P ++ Sbjct: 587 KDIVILMRATQNWAPAFVEELNNSGIP-VFADTSVGYFQAIEIKTIISLLQIIDNPLQDI 645 Query: 611 TLRSALATSMMGLNALDI---------------------------ETLNNDEHAWDVVVE 643 + L + + G + D+ +L + + + VE Sbjct: 646 PFIALLRSPIGGFSPEDLIDLRVVNREISFYEILKAIKEHSLELKYSLEHIDERLEYKVE 705 Query: 644 EFDGYRQIWRKR----GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAG 698 +F +WR++ + + + + A GG +R ++ + E Q Sbjct: 706 QFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLRMLFERAKQYKN 765 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 + + ++++ L+ S L ++++V+I++IHKSKGLE+P++ L Sbjct: 766 ISYKGLFNFINFINK--LKSSSTDMGNAKILGENENVVRIMSIHKSKGLEFPVIILSGAG 823 Query: 759 NF----RVQEQAFYHDRHSFEAVLDLNAAPESV---------DLAEAERLAEDLRLLYVA 805 + + +H + S + E L+E++R+LYVA Sbjct: 824 KRFNLTDINKSVLFHKELGLGPEYVNSERHISYPTIVKQVLKRKLKMETLSEEMRILYVA 883 Query: 806 LTRSVWHCSLG------------VAPLVRRRGDKKGDTDVHQS---------ALGRLLQK 844 TR+ + DK + + S A+ R Sbjct: 884 FTRAKEKLIITGTVDNIENTFQRWCEAAYCEEDKLPEYSLINSRNFLDWIGPAVARHPCG 943 Query: 845 GEPQDAAGLRTCIEALCDDDIAWQTAQ-TGDNQPWQVNDVSTAELNAKTLQRLPGDN--- 900 + + + DD W+ + DN +++ ++ K +N Sbjct: 944 EIIRKVCPFEYNLNLITGDDSKWKVFVYSKDNFKSTLDENIDEDIIGKIKSLELDNNKEI 1003 Query: 901 -----WRVTSYS-----GLQQRGHGIAQDLMPRLD-VDAAGVASVVEEPTLTPHQFPR-- 947 +R +++ + +L R +D +E L F R Sbjct: 1004 YKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFKLIDTENGIEFMEPIYLKKPAFLRES 1063 Query: 948 -GASP---GTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWI--TAVLQAP 1001 G +P G +H + + +D + ++E+++ F + I +++ Sbjct: 1064 KGLTPSERGIVMHLVMQHIDIDKVGSYEQIKEQVDKLVFREFITEAEAKSISVYKIIKFF 1123 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 +E G+ + + N E+ FY+ I + QL I + + + Sbjct: 1124 NSEIGIRMK--KSNNVYREVPFYMEIESTELYKQLPQHI--------------YRDEKVL 1167 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 ++G ID F L+DYK++ +G+ S +Y +Q Y AL + Sbjct: 1168 IQGIIDCYFEENNELILVDYKTDHVGDIDS-----------IKEKYQVQIYYYGRALEKL 1216 >UniRef50_A5KIK3 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A5KIK3_9FIRM Length = 1197 Score = 488 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 237/1233 (19%), Positives = 441/1233 (35%), Gaps = 190/1233 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++ + P+ V+ LL+VTFTEAA AE++ RIR Sbjct: 19 NILVSAAAGSGKTAVLVERIIQKITDEQS------PVDVDRLLIVTFTEAAAAEMKDRIR 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I + + +NP L + + A + TIH FC ++ Sbjct: 73 EAIEK-------KLEENPGNVHLERQAT--------------LVHSAPITTIHSFCLSVI 111 Query: 138 NLNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRD 196 + + ++ ED E L Q D CY E E + + + Sbjct: 112 REHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTERFGTGKNDRKI 171 Query: 197 INRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESS-GIDRR 255 L+ P E R A + + + R A + IE + RR Sbjct: 172 EGIILK--LYEYSGSYPRPEQWLDRCAAVYTEEEAAEAMIRRAKEHVLIRIEEPEKLIRR 229 Query: 256 KFNRSNQAKWIDKISAWAEEE----------TNSYQLPESLEKF---------------- 289 + + EE+ ++ ++ ++ ++F Sbjct: 230 GLKICEEPDGPYMYADMLEEDLRGIEKIRKCSDFAEMYDAADRFVWKTLSRKKDDSVSAE 289 Query: 290 ---SQRFLEDRTKAGGETPRHPLFEAIDQLLAE-PLSIRDLV--ITRALAEIRETVAREK 343 S + L ++ K + F A + + E +S + V + + E A +K Sbjct: 290 KRESVKALREQAKKAIAGVKETYFYAPESVWKEDMVSAGESVKTLVSLVKLFAEKFAEKK 349 Query: 344 RRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 R R + F+DM L E +A +F MIDE+QD++ Q I Sbjct: 350 RGRNMIDFNDMERFALDILTEEKNGELVPSAVAGEYAKQFEEIMIDEYQDSNFVQETILT 409 Query: 399 RIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNWRSAP 451 + + + + ++GD KQ+IY+FR + +M+ + L N+RS Sbjct: 410 SVSGQAEGKNNIFMVGDVKQSIYSFRLSRPELFMQKYNTYSLEDSDRQRIDLHKNFRSRG 469 Query: 452 GMVNSVNKLFSQT-----------DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM- 499 +++SVN +F + D A ++ F + + + + T Sbjct: 470 EVLDSVNYIFRRIMKKEMGGIEYDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKT 529 Query: 500 KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 ++ +++ + + + A++ A +I+ ++ G + RPV+ DI +L R Sbjct: 530 ELLILKDRDKEAENVRRSEARMIARRIKSLMRGGV---VSDKKTGEYRPVQYKDIVILTR 586 Query: 560 SRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 S + A+ L IP+ +S R+ FET E +L L+ + ++ L + LA+ Sbjct: 587 SVKGWAEDFSAVLAEEGIPAYSVS-REGYFETYEVSVLLDYLKILDNGRQDLPLAAVLAS 645 Query: 619 SMMGLNALDIETLN--------------------NDEHAWDVVVEEF---DGYRQIWRKR 655 + L D+ + D D ++ F D +R+ Sbjct: 646 PLGNLLTEDMAKIRVAYPDVPFHESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYT 705 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQH 714 + +L ++ + A GG +R ++ + E + GT + VR++ Q Sbjct: 706 PIHDLLTEIIEETGFGIYISAMEGGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQ- 764 Query: 715 ILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHD 770 L+ + ++ V+I++IHKSKGLE+P+V+ + + H Sbjct: 765 -LKKYDVDYGEAGIMDEQADTVRIMSIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHP 823 Query: 771 RHSFEA-VLDLNAAPES--------VDLAEAERLAEDLRLLYVALTRSVWHCSLG----- 816 +DL ++ + A E AE++R+LYVALTR+ + Sbjct: 824 EWGIGIDKIDLKRRTKAPTFLKKLIREEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPD 883 Query: 817 --VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGD 874 + + G + L + E CI +DI Q Sbjct: 884 RFIMRSGKDGVITAGAKSYFDWIIPALWSEEEEAALEDAPVCIFQYTGNDIGADILQVKS 943 Query: 875 NQ-------PWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD 927 Q W V V E+ K L + S G++ +L R + Sbjct: 944 EQLALDVLKHWDVTKVYDPEIR-KCLDEQADYVYPYYSEGGMK--MKFTVSELKKRKALQ 1000 Query: 928 AAGVASVVEEPTLTPHQFPR---------GASPGTFLHSLFEDLDFTQPVDPNWVREKLE 978 + +EP P PR GAS G+ H E LDF + + + + ++E Sbjct: 1001 EEAGEEMYKEPQTVPL-LPRFIKEEETLSGASRGSAYHKFLELLDFAKEYEADDLEAEVE 1059 Query: 979 LGGFESQWEPVLTEWI--TAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQ 1035 + + + E I +++ ++GV + Q + K E F + ++ I Sbjct: 1060 RLAEDGRLSREMAECIETEDMMRFLRTKSGVRMLQAARNRKLYKEQPFVISVNASEI--- 1116 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 L ++ +++G ID+ F E +LDYK++ + Sbjct: 1117 -------------YQGDLSGEKI--LVQGIIDVYFEEEDGLVVLDYKTDQVKSRKE---- 1157 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 +Y Q + Y AL + + + Sbjct: 1158 -------LVEKYHAQLEYYAHALSQLTGKTVKE 1183 >UniRef50_A6NVW3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVW3_9BACE Length = 1206 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 256/1248 (20%), Positives = 429/1248 (34%), Gaps = 213/1248 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + L + G L ++ LV+T+T+AA AELR RI Sbjct: 18 GALLVSAAAGSGKTRVLVERLLGRVEHEG--------LDIDRFLVITYTKAAAAELRSRI 69 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + +RL D+ Q L + +A + T+H FC ++ Sbjct: 70 VEELS----------------QRLARNPTDRHLRRQQTL-----VYKAQISTVHSFCAQL 108 Query: 137 LNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPL--PREIAQVVFETWKGPQA 192 L + + +L ++ L +A + R + + A++V G Sbjct: 109 LRECGHMLDVNPDFRLCDEGEAGVLMLRALDEVMDRRYEDITPDSDFAKLVDTMSAGRDD 168 Query: 193 LLR---------------DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 D +L + D ++ + W Sbjct: 169 SRLMQIVLDIRGRVQSHPDPAAWLDQQGAAFSLEGVTDAGETPWGKLLLEDAAAQARYWL 228 Query: 238 DA-VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY---------------- 280 G L+ +D + I + A+ + + Sbjct: 229 SRMAGALEDCACDPNLDANY--APTISATIAGLQAFLDGAAQGWDAAAAALPISFPPAGR 286 Query: 281 ----QLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAE 334 + PE+ E+ + +R K E + LL++ ++ V + + + Sbjct: 287 KKMTECPEAAERVKS--VRNRCKKRLEKLAEGFSDDSAGLLSDMAAVYPAVRGLFALVKD 344 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQ 392 A EK RRG L F D+ L E G LA R+ M+DE+QDT+ Sbjct: 345 FEAAYAAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLAKQWSGRYDEIMVDEYQDTNAV 404 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV----------HAHYT 442 Q IF I Q L ++GD KQ+IY FR AD +++ Sbjct: 405 QNAIFSAI--SQDGRNLFMVGDVKQSIYRFRLADPTIFLEKYRTFTPYETAEEGEPRRII 462 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK-----SAGKNQALRFVFKGETQP 497 L N+RS ++ N +F F E+ + + ++ A V Sbjct: 463 LSKNFRSRAQVLEGANFIFRGIMSR-SFGEMDYTADEALYPGASYPEGADYAVELDALDL 521 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 A E ES A+ A +I++ G + RP D+ +L Sbjct: 522 AAGGGDDEDESGEKTPRDLLEARFLAKRIKEL---KDGGFPVSDGEGGTRPAGYGDMVIL 578 Query: 558 VRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 VRS AL +IP + D FET E L LLQ V P ++ L S L Sbjct: 579 VRSPNSVLHHYARALGERDIPWEADAGGD-YFETTEVSVALSLLQIVDNPRQDVPLISVL 637 Query: 617 ATSMMGLNALDIETLNNDEHAWD-----------------VVVEEFDGYRQIWRKRGVMP 659 + + G A + L D + E + R R Sbjct: 638 RSPVYGFTADRLAVLRAASPDTDFYAALVKGAEEGGVDCAAFLAELEDLRFRSGDRNSHQ 697 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEP 718 +L + N+ A GE+R ++L + EL ++ + + +L++ Sbjct: 698 LLWQIYDRTNLLGIFGAMDEGEKRQGNLLALCELARQFEAAGHKGLFGFLTYLTRLRDNG 757 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF----RVQEQAFYHDRHSF 774 A+ Q R + V+I++IHKSKGLE+P+V L +T +Q +H + Sbjct: 758 GKLAAPQAAR---EGGGVRILSIHKSKGLEFPIVLLSGLTRRLNRDDMQRPILFHPQLGV 814 Query: 775 EA-VLDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 LD E LA E +AE+LRLLYVA+TR+ L A Sbjct: 815 GPKRLDTERMIEYPTLARRAVARQLEYEMMAEELRLLYVAMTRAKEKLILSCALTRGAAD 874 Query: 826 DKKGDTDVHQSALGR------------LLQKGEPQDAAGLRTCIE-----ALCDDDIAWQ 868 +K D A + LL DA +R + A + W Sbjct: 875 LRKLAEDAEYPADPQVLSGCQSVGQWVLLPVLTRPDAVAIRRAADYPLPIAAAELGPDWD 934 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGD-----NWRV---------TSYSGLQQRGH 914 + Q + TA L+ + GD W+ + + Q +G Sbjct: 935 IRWVDGSDLLQPPERKTAVLSENVEDKPVGDLTGVLTWKYPYAGDVEIPSKLTATQLKGR 994 Query: 915 GIAQDL-----MPRLDVDA-----AGVASVVEEPTLTPHQF-PRGASPGTFLHSLFEDLD 963 + Q+ +P+ + + AG S + P +F A GT LH + + +D Sbjct: 995 ELDQEAGAEFPLPQGEPEEPAAVPAGKRSTLRRPRFAEEEFGLTPAQKGTALHLVMQYID 1054 Query: 964 FTQPVDPNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ 1018 F + V+E++ Q E V I A Q+PL + + + + Sbjct: 1055 FERAGTEEQVKEEIARLVAGAYITPEQGEAVNPAKIAAFFQSPLGREMM-----ESVSLR 1109 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 E +F + P + CP + + +L+G +D F + Sbjct: 1110 REFKFSI-----------------LVPAADYCPGAGEGE-QVLLQGVVDCCFETLEGITV 1151 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 +D+K++ + T++ + +A Y Q Y+ AL R+ Sbjct: 1152 VDFKTDRV-------TRRTIQE--RAEEYRPQLTAYSRALEEMTGRRV 1190 >UniRef50_B1HN90 ATP-dependent helicase/nuclease subunit A n=2 Tax=Bacillaceae RepID=ADDA_LYSSC Length = 1238 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 224/1283 (17%), Positives = 444/1283 (34%), Gaps = 240/1283 (18%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + + ++ A P+ V+ELLVVTFT A+ AE+R R+ Sbjct: 29 TLVSAAAGSGKTAVLINRMIEKVI------ATDNPINVDELLVVTFTNASAAEMRHRMSE 82 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + + + +NP L +++A + T+H FC ++ Sbjct: 83 ALEKAIV-------ENPTSSH--------------LRRQLSLINKAQISTLHSFCLAIVK 121 Query: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFETWKG------- 189 A+ + ++ + +LLR AD Q ++ Sbjct: 122 QYAYLLDIDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQVQAIYRLVDSFTSDRDD 181 Query: 190 --PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID-------TVKQQWRDAV 240 + L+ + + A + + + ++ TV+ +A Sbjct: 182 QAIETLISKLYDTSRVHAEPQRWLWSLPKAYELAEEVTIDDLELSHYVKLTVRHSLEEAF 241 Query: 241 GELDALIE-----------------SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP 283 + + + + S + W + +A + ++ + Sbjct: 242 VLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQELFDYFATVKWSTLKRV 301 Query: 284 E-------SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAE 334 L++ +++ E K + +LL E + ++ + Sbjct: 302 SKDALVDVELQELAKKKREAAKKIMNKMKETYFIRTPARLLEEIRLMAPIIGTLVELTTI 361 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSE-----SGEVLAAAIRTRFPVAMIDEFQDT 389 E K RG + F D+ L E +A ++ RF ++DE+QDT Sbjct: 362 FSEQFRLAKLERGIIDFSDLEHYALQILTVEVDGELQPSPVALDLKKRFKEVLVDEYQDT 421 Query: 390 DPQQYRIFRRI-WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HY 441 + Q I + + + + L ++GD KQ+IY FR A+ +M+ SE Sbjct: 422 NMLQETILQLVKSGEEQDGNLFMVGDVKQSIYRFRLAEPKLFMRKYSEFLETPDATGMRI 481 Query: 442 TLDTNWRSAPGMVNSVNKLFSQT-----------DDAFMFREIPFIPVKSAGKNQALRFV 490 L+ N+RS ++N N +F+Q D+A + P+ + + + Sbjct: 482 DLNANFRSRKEVLNVTNYIFAQIMGERVGEILYDDNASLKPAAPYDEKEVPVELVVMHPP 541 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 ET + E A+ +IR ++ G RP++ Sbjct: 542 QDEETVDEQEDKTDEASELEELKKSQYEARFIIDRIRQMMEDGT--TVYDTKSMTERPLK 599 Query: 551 ASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 SDI +L+RS + + + L IP +Y + F+ LE +L +L+ V P ++ Sbjct: 600 YSDIVILMRSMTWSTDLVEEFKLAGIP-LYAESSKGYFDALEVMIILNVLKVVDNPYQDI 658 Query: 611 TLRSALATSMMGLNALDIETLNNDEH---AWDVVVE----------------------EF 645 L S L +GL ++ + + +D + + F Sbjct: 659 PLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEGQGVQTTTFEKLQRFMLAF 718 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESE 704 + +R + R+ + ++ + + E + A G++R ++ + + L T Sbjct: 719 ENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANLRILHDRALMYEQTAFRGL 778 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 +R++ + D +++ + +V++VTIH SKGLEYP+V++ + + Sbjct: 779 FRFLRFIDRMRTRGDDLGTAK--SIGEKDDVVRLVTIHSSKGLEYPVVFVAGMGR-PFNK 835 Query: 765 QAFYHDR--HSFEAVLDLNAAPESV------------DLAEAERLAEDLRLLYVALTRSV 810 F+H + PE+ + E E AE++R+LYVA+TR+ Sbjct: 836 MDFHHPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMRAEEMRVLYVAMTRAK 895 Query: 811 WHCSL---------------------------------------GVAPLVRRRGD----K 827 L + P V R GD Sbjct: 896 ERLILVGSVKNWEKTRDNWQDAQNIPSDAPLQEYLRARANSYLDWIGPAVARHGDFASQA 955 Query: 828 KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 S +Q P D I+A D+ T Q + ++ A+ Sbjct: 956 TTSYKELDSPSHWWIQ---PIDTRHYSYDIQAFNDEIQQHLTTQEDEALLSEIKARFHAQ 1012 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL--DVDAAGVASVVEEPTLTPHQF 945 + R TS S +++ + Q+ S+ PT Q Sbjct: 1013 YTYQKSTRKRSK----TSVSEIKRLENLQRQEEPEYYFATPAKRTSTSIAPRPTFLQDQQ 1068 Query: 946 PRGASPGTFLHSLFEDLDFTQPVDPNWVR---EKLELGGF--ESQWEPVLTEWITAVLQA 1000 G GT +H++ + + V+ L E++ + V + + Sbjct: 1069 LTGTEIGTAVHTVMQHIPQFGFDTIEAVKGFVANLVAKQLLTEAEGKVVPIKKVYHFFHT 1128 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 + + Q+ + EM F + ++ Sbjct: 1129 EIGQRFKQARQI-----RREMPFTI-------------------------SRVDEDGDAQ 1158 Query: 1061 MLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 +++G ID +F E G + LLDYK++ + + + A+ + RY +Q ++Y+ A+ Sbjct: 1159 IVQGIIDCLFEDEYGNWVLLDYKTDRILPHFA--KEPALTKEIMG-RYAVQLRVYSEAIE 1215 Query: 1120 RYLRHRIADYDYEHHFGGVIYLF 1142 L+ ++++ V+YLF Sbjct: 1216 SILQIKVSEK--------VLYLF 1230 >UniRef50_C7GAA3 ATP-dependent nuclease subunit A n=2 Tax=Roseburia RepID=C7GAA3_9FIRM Length = 1237 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 233/1246 (18%), Positives = 434/1246 (34%), Gaps = 201/1246 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++++ P+ ++ LL+VTFT AA AE+R RI Sbjct: 19 NILVSAAAGSGKTAVLVERIIKIITDK------EHPVDIDRLLIVTFTNAAAAEMRERIG 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + L+E D+ + L + A + TI FC ++ Sbjct: 73 NALENA----LKEQPDD-----------------EHLQRQLSLLHNAQITTIDSFCLYVI 111 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVV--FETWKGPQAL 193 + E + ++ ++ L L+ A ++ E V + + + AL Sbjct: 112 RNHFHEIDLEPNFRIGDEGELKLLKEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171 Query: 194 ------LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 L + +R + A + A + ++ Q + +L AL Sbjct: 172 SGMILQLYEFSRSYPWPKKWLLAAAESYGIEDEASLESAAFMQSLLQNLKRVSEDLVAL- 230 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ---------------- 291 R + + D + E + Y+ + E F+ Sbjct: 231 -----SGRAYKLTQDDDGPDMYAKALEGDLEKYKEIAASESFADFYQNYRNLSYDRLASS 285 Query: 292 -------------RFLEDRTKAGGETPRHPLFEAIDQLLAEPL---SIRDLVITRALAEI 335 + L + K + F +++AE + + + R E Sbjct: 286 RGFDGNEEKLELVKKLREMGKDAVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEF 345 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVL---AAAIRTRFPVAMIDEFQDTDPQ 392 ET EKRR+ + F D+ + E + A R F MIDE+QD++ Sbjct: 346 DETFTAEKRRKNLVDFHDLEHFALNIFVDEETGKVKKTAEEFRDNFKEIMIDEYQDSNEV 405 Query: 393 QYRIFRRIWHHQ-PETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDT 445 Q I R I + E L ++GD KQ+IY FR A +M+ L Sbjct: 406 QETILRAISREERGEYNLFMVGDVKQSIYRFRLARPELFMEKYDTYSLTDAKMQRIDLHK 465 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS +++ N +F + + +A A P + + + Sbjct: 466 NFRSRNEVLDFSNDIFYRIMKRNLGN--VEYDADAALYPGASYQEETDMFTPEILLVDGD 523 Query: 506 GE---SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 E D + A++ A +I++ + + + RPV+ SD+ +L+RS Sbjct: 524 DELLDDAAADDKKLLEARMIAKRIKELMGT---QKVTDKATGELRPVQYSDMVILLRSLS 580 Query: 563 E-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 A + L IP+ +S F T+E Q +L +L+ + P ++ L + L + + Sbjct: 581 GYADRFAAVLNDAGIPAHTVS-ATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIA 639 Query: 622 GLNALDIETLN---NDEHAWDVVVEE-----------------------------FDGYR 649 GL+ ++ L + ++ V+EE ++ R Sbjct: 640 GLSDEELAKLRLKDKNVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLR 699 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALV 708 Q+ + ++ L+ + A G+RR ++L + E + T + V Sbjct: 700 QLVPDTPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFV 759 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN--FRVQEQA 766 R++ + L+ + + ++++V+I++IHKSKGLE+P+V+ + R ++ Sbjct: 760 RYIDE--LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRS 817 Query: 767 FYHDRHSFEAVLDLNAAPESV-----------DLAEAERLAEDLRLLYVALTRSVWHCSL 815 LD + V + E L E+LR+LYVALTR+ L Sbjct: 818 RLVLHPELGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLIL 877 Query: 816 G--------VAPLVRRRGDKKGDTDVHQSALGR----LLQKGEPQDAAGLRTCIEA-LCD 862 ++ ++ +SA G L QD +R A L Sbjct: 878 TGSLKKAEETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASCQDKYQIRLMRAAELVQ 937 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV---------TSYSGLQQRG 913 +++ Q + E + + S S L+ R Sbjct: 938 EELETQIKDDWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRA 997 Query: 914 HGIA----QDLMPRLDVDA--AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP 967 A ++ +P + V + E GA GT +H + E F+ Sbjct: 998 MREAFEKEEEAVPVFQYEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSG 1057 Query: 968 VDP-NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYL 1025 V V LE + ++ I V + G + K E F + Sbjct: 1058 VSAKEQVAGMLEKEQITPEMHGLIR--IPQVEYFVNADIGKRMGTAEKDGKLYREKPFVM 1115 Query: 1026 PISEPLIASQLDTL-IRQFDPLSAGCPPLEFMQVRG----------MLKGFIDLVFRHEG 1074 ++ QLD + + + + G +++G ID+ + + Sbjct: 1116 GFTD----EQLDEFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKD 1171 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 LLDYK++ + + + RY Q +LY AL+R Sbjct: 1172 GIVLLDYKTDRVDTEKE-----------LSERYAAQLKLYEEALNR 1206 >UniRef50_B1I493 ATP-dependent helicase/nuclease subunit A n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=ADDA_DESAP Length = 1230 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 226/1278 (17%), Positives = 413/1278 (32%), Gaps = 229/1278 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A AG+GKT + +R + P+ V+ LLVVTFT AA AE+R R+ Sbjct: 20 NLLVAAGAGSGKTAVLVERVIRRISDPAA------PVDVDRLLVVTFTNAAAAEMRKRVA 73 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E +K L R + +A + TIH FC +L Sbjct: 74 EAL---------------------ERELEKHPGMPLLEHQLRLLPQADITTIHSFCAELL 112 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRH--CYPLPREIAQVVFETWKGPQAL 193 + + E ++ ++ LR + +F+ ++ +V L Sbjct: 113 RRYHYLIDLDPEFRVADETEAAILRQETLEEFFEEQYRVITGDPDLEFLVEAYGGERDDL 172 Query: 194 -LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV------------------KQ 234 L+++ L P E +R A A + + Sbjct: 173 KLQNLVSGLHR----FARSNPWPEAWLARAAAFGADPQGLDGDGPLAWGLRDLVGTGLEA 228 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRF- 293 + L+A G + + + +++ + + F+ R Sbjct: 229 AVFELRAALEAAKAPGGPAVYADALAAEVEGTARLAGLVAGDWEPLRAAFLAFGFTPRLP 288 Query: 294 ------------LEDRTKAGGETPRHPLFEAI-----DQLLAEPLSI--RDLVITRALAE 334 L R + + L E ++LL+E ++ + A+ Sbjct: 289 AARAGVDQELKDLCSRCRKKAKERIQNLKETFFARRPEELLSEMAALGPAMRRLAALAAD 348 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQ 387 E K R + F D+ L + +AA +R + ++DE+Q Sbjct: 349 FGEAYRTAKLARNLVDFADLEHYCLQILLAPGSTPEAPVPSPVAAGLREYYVEVLVDEYQ 408 Query: 388 DTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------- 438 D + Q I R + L ++GD KQ+IY FR A+ +++ Sbjct: 409 DINAVQETILRLVSRQDAAAPNLFMVGDVKQSIYRFRLAEPALFLEKYRAFDTGEDAGGA 468 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 L N+RS ++++VN +F + + + + G P Sbjct: 469 RRIDLSHNFRSRESIIHAVNAVFRRIMTPAVGELAYDTAAELVCGGTPAQLEGSG---PP 525 Query: 499 MKMWLMEG------ESCGVGDYQ---STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 +++ L+ ++ G D + S A + A Q L AG + G+ P Sbjct: 526 VEVHLLGAPTSVGRDTAGTADDEPDRSDEADLTAVQREARLVAGIIRRLAGLGGECTVP- 584 Query: 550 RASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 DI VL+R+ A + IP+ Y FE +E + +L LL+ + P + Sbjct: 585 -YRDIVVLMRATTGKAGTYLEEFRRQNIPA-YAKVGTGYFEAVEVETVLSLLKVIDNPHQ 642 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWDV--------------------VVEEFDGY 648 + L L + ++GL A ++ + + D +E + + Sbjct: 643 DIPLAGVLRSPLVGLGAAELAAVRLADKEGDFFRAVVAAAGQGGRLGAVLAGFLERLEKW 702 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHAL 707 R R + ++ + + + GG R ++ + + Q T Sbjct: 703 RSQARCGSLADLIWDVYRTTGYYDYVGGLPGGAGRQANLRALYDRARQYEATAFRGLFRF 762 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF----RVQ 763 +R++ +L+ L +++V+I++IH++KGLE+P+V L + + Sbjct: 763 LRFIE--LLQEGGQDLGPAPALAESENVVRIMSIHQAKGLEFPVVILADMGRRFYMPDLN 820 Query: 764 EQAFYHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 + H A + E+LAE++R+LYVA+TR+ Sbjct: 821 GEVLLHKDLGLGPYFVDPGARVSHPTAAWHVVRERLRREQLAEEMRILYVAMTRARERLI 880 Query: 815 LGVAPLVRRRG-----------------------------------DKKGDTDVHQSALG 839 L + + + + A+ Sbjct: 881 LTGSAGRLEQAVLRWSHAAAGDGETLPVPVLAEAESFLDWVMPVLMAHPDGEPLRRLAVR 940 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD 899 G P+D + + D + A + ++ + + + Sbjct: 941 SRPAAGTPKDRSRWEVHLHRPEDLEEAAGADPDTAAVLESLRRLAPIPADGGLDEAVHRA 1000 Query: 900 NWRVTSYSGLQQRGHGIAQDLMPRL------DVDAAGVASVVEEPTLTPHQFP--RGASP 951 +S L G I+ + R + P P RG SP Sbjct: 1001 LSWHYPWSALASCGAKISATEVKRRFAAAAAGEEEVPAVFPYRAPPARPAFLETARGLSP 1060 Query: 952 ---GTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL--NETG 1006 G +H + + LD + + +R ++ I A A L G Sbjct: 1061 QAFGRAMHVVLQHLDLAGDLSVDGIRAQVAGLEEREFLTATEARAIDAEKLAGLFAGGLG 1120 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ-VRGMLKGF 1065 L+ + E F L + P P LE R M++G Sbjct: 1121 RRLAGALWVRR--EWPFCLVV-----------------PAHEIYPGLEGHPEERVMVQGI 1161 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 ID +F L+DYK++ +G A A RY Q LY A+ LR R Sbjct: 1162 IDCLFAEPDGLVLVDYKTDRVGPGG---------EAALADRYRGQLDLYARAVEAVLRRR 1212 Query: 1126 IADYDYEHHFGGVIYLFL 1143 + + YLFL Sbjct: 1213 VKE----------RYLFL 1220 >UniRef50_C8ZW81 UvrD/REP helicase n=4 Tax=Enterococcus RepID=C8ZW81_ENTGA Length = 1226 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 220/1251 (17%), Positives = 426/1251 (34%), Gaps = 205/1251 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + L ++ELL+VTFTEAA E++ RI+ Sbjct: 27 NLLVSASAGSGKTTVLVRRVIEKLKAGSQ---------IDELLIVTFTEAAAREMKERIQ 77 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + Q Q + + + A + T+H FC ++ Sbjct: 78 VALQTAINQ------------------ESQEQKRQHFVRQLQLLPTANISTLHAFCLTVI 119 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFW---RRHCYPLPREIAQVVFETWKG--PQA 192 + + +++ DE+ + + W R Y E + E + Sbjct: 120 RRFYYLIDLDPGFRMLTDETEILL-LKEEIWTQLRDAHYEANDEAFFRLTENFASDRSDE 178 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA------RIDTVKQQWRDAVGELDAL 246 + D+ L A P + LA + +K + + L Sbjct: 179 TVGDLILSLYDFARANPDPEKWLDGLAVNYEAADNLGENHLYQAQIKPTLVEIAATAEHL 238 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE---DRTKAGGE 303 + ++ + +A + + +E + L R DR + + Sbjct: 239 LAAAKQFADQSPLMEKAAALVQAEISQVQEIQRVLATDDLSVLYDRLTHLTFDRYPSYRK 298 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLV------------------------ITRALAEIRETV 339 + L + I L + + + + + E Sbjct: 299 EEQKELSQEIKPLRDDAKKLLEQLKGYFPYPPADMLQMLQLSEPIVATMAEMTKEFLTAF 358 Query: 340 AREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 K +G L F+D+ L + +G + R +F ++DE+QD + Q I Sbjct: 359 QARKLAKGLLDFNDLEHFTLKILLGDGTGSDASVYYRDKFEEVLVDEYQDINRLQEAILY 418 Query: 399 RIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKAR-----SEVHAHYTLDTNWRSAPG 452 + + ++GD KQ+IY+FR AD +++ L N+RS Sbjct: 419 WVRQVSGDHGNMFMVGDVKQSIYSFRLADPTLFIEKYLAFEHQNGGRRIVLAENFRSRRE 478 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG-- 510 +++ N +F Q D ++ IP A F ++ + E E+ Sbjct: 479 VLDFTNLVFQQLMD----EQVGQIPYDDAAALVPGFPSFHESDAFIPELLIYEKEAESTT 534 Query: 511 --VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 + D V A +I++ +Q+ + + RPV DI +L +R+ + Sbjct: 535 NLIEDKTEGELHVTAIKIQELIQS--QFMIYDKKRREERPVTYQDIVLLTPTRKNNLVIL 592 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 D IP + +++ + F+ E Q M+ LLQ + P ++ L + L + M+GL ++ Sbjct: 593 DVFKKFGIP-LEVNDAQNYFQATEIQTMIALLQIIDNPYQDIPLVAVLRSPMVGLTEDEL 651 Query: 629 ETLNNDEH------------------------AWDVVVEEFDGYRQIWRKRGVMPMLRAL 664 + + D + E + +R+ R+ + +L + Sbjct: 652 AEIRLADRTSEFYKAVLTYQDNQKGTVSALSKRVDDFLSELNRWREAARRLPIPNLLWDI 711 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHILEPDSNAS 723 + ++ G++R +++ + + + + +R++ + + A Sbjct: 712 YDTTAYLDYVVGLPAGQQRYANLIALIHRAEKYEKSSFRGLYQFIRFIEKMQEKDKDLAE 771 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE--QAFYHDRHSFEAVLDLN 781 E + V+++T+H SKGLE+P+V+L T F + Q Y A + Sbjct: 772 PLATPAE---NAVRVMTVHASKGLEFPVVFLLDTTKFFNYQDFQKRYIFEEQLGAGIQYI 828 Query: 782 AAPESVDLAE-----------AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 A E++ + L+E++R LYVALTR+ L + R+ K Sbjct: 829 DASENIKYETIPFQAIKQVRLKKALSEEMRKLYVALTRAEQKLYLVGSYKDRQAAFKAWQ 888 Query: 831 TDVHQS-----ALGRLLQKGEPQDAAGLRT------------------------------ 855 + QS RL+ +G D GL Sbjct: 889 AGLTQSQTVLDPALRLVARGSLMDWVGLTLIRHPEMEQVFTDASERKMTIHHPARFQIHW 948 Query: 856 CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY---SGLQQR 912 + D + Q P LN Q + TSY S L++ Sbjct: 949 WNQDQIDQQLQVQPPTEAVVAPTPSTTAPERLLNRLDYQYPYSKATQTTSYQSVSELKRL 1008 Query: 913 GHGIAQDLMPRLDVDAAG----------VASVVEEPTLTPHQFPRGASPGTFLHSLFEDL 962 + + L+ +A V + + +P Q P+ +S G+ H + + L Sbjct: 1009 YNDPDDQDITLLEWHSADQKLAPQRFRYVETELAKPRFLQEQKPQASSIGSATHLVMQML 1068 Query: 963 DFTQPVDP----NWVREKLELGGFESQWEPVLTEW-ITAVLQAPLNETGVSLSQLSARNK 1017 T+ ++ E +E F + + I Q + +T + + Sbjct: 1069 PLTEVPTEASLAAFIDELVERQLFTKDVADKIDQASIVWFYQTAVGQTLIKYAT----QV 1124 Query: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 + E F + + T+ FD A ++ G ID R Sbjct: 1125 KREQPFSM-------LKEAATIFEGFDEPDAEL----------LIHGIIDGYVELPDRII 1167 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 L D+K++ + + +A RY Q +LY AL + L+ + + Sbjct: 1168 LYDFKTD------AVFGSEAQIEKRMRDRYYGQLKLYCQALEQALQKPVTE 1212 >UniRef50_B9XFA1 Recombination helicase AddA n=1 Tax=bacterium Ellin514 RepID=B9XFA1_9BACT Length = 1211 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 247/1237 (19%), Positives = 465/1237 (37%), Gaps = 204/1237 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G L+ A AGTGKT T+ L L+ P +++E+L+VTFT+AA AE+R R Sbjct: 14 RGNVLVVAGAGTGKTRTLVERCLHCLVEEKP------PTSLDEILMVTFTDAAAAEMRQR 67 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR+ + + L + DD D A + T+H FC + Sbjct: 68 IRARLE----------------QELAKHTDDL-----RWTEQLTIFDTAHIGTLHSFCLQ 106 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLP------REIAQVVFETW 187 ++ + +E + + ++ +E LL + + + H +++ QV W Sbjct: 107 LVRQHFYELELDPQLTVLPEEEARLLADETLENLLQSHYAGDAEGAEAVQQLIQVQGRGW 166 Query: 188 KGP-----------QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 P LRD +L+ + + +P P A ++ I + +W Sbjct: 167 DQPIRTLVLRLHHYTQTLRDPADWLKSQLEMFASPEP-----AQWRTWLIEGITDWRNRW 221 Query: 237 RDAVG--------------ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL 282 A+ L +L+E+ +++ W + ++ Sbjct: 222 LPALQSEKSDNLKATECCRALASLLENPSLEQ---GAEALENIWAADLEWPRGKKTDWRK 278 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVARE 342 P LE F + R+ A PL E D + + S+ L + + Sbjct: 279 P--LEDFLEEATFLRSLARKTKEVDPLAEDWDWIRGQMTSLLGL-----AEQFSAAFSLA 331 Query: 343 KRRRGELGFDDMLSRLDSALRSES---GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 KR G + F D+ L + +A R + +DE+QD + Q I + Sbjct: 332 KRELGVVDFHDLEQHSLQLLWDRNTKQATAVARQWRKKLRFVFVDEYQDINDAQDAILKA 391 Query: 400 IWHHQPETALLLIGDPKQAIYAFRGADIFTYMK----ARSEVHAHYTLDTNWRSAPGMVN 455 + E+ L+GD KQ+IY FR AD + R L N+RS ++N Sbjct: 392 LSREGEESNRFLVGDVKQSIYRFRLADPHIFQNYIETWRGADGKAIPLVDNFRSREAILN 451 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGK------NQALRFVFKGETQPAMKMWL------ 503 +N LF + M R+I +P + + E P +++ L Sbjct: 452 FINSLF----EGLMRRDIGSVPYDDEARLRFGNAENRVDLSCAKEDAPRVELHLRLKGSL 507 Query: 504 -----MEGESCGVGDYQS----TMAQVCAAQIRDWLQA--GQRGEALLMNGDDARPVRAS 552 EGE G + A+ A I L A ++ A + RPV S Sbjct: 508 EAKDMPEGEGEGSRAWTEMMNLEEAEKEARLIGKRLLALKAEKHLAWDEHTKAMRPVTWS 567 Query: 553 DISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENT 611 D++VL+RS ++A + L IP L R +E++E ++L LLQ + P ++ Sbjct: 568 DMAVLLRSPARKAESYAKEFSRLGIP--LLVARGGFYESMEVTDLLSLLQLLDNPLQDVP 625 Query: 612 LRSALATSMMGLNALDIETLN------------------NDEHAW----DVVVEEFDGYR 649 + L + ++G++ ++ T+ ++EHA D ++ F +R Sbjct: 626 TLAVLHSPLVGMSLDELATIRLKLTKGPIWMALRRFHESDEEHAGWKKADRFLKNFASWR 685 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVR 709 ++ R+ + L A++S + A LL GE+R ++ + L Q+ L R Sbjct: 686 RLARQVSLSRCLEAVLSETHYAAWLLTQHRGEQRHANVQRLLGLAQQFDRFQR--QGLFR 743 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQ 765 +L + I + + ++ +++ V ++++H+SKGLE+P+V + + ++ + Sbjct: 744 FL-RFIDAQQAAETEPEVAAVAEEDAVSLMSVHQSKGLEFPVVVVADLGKPFNMMDLRAE 802 Query: 766 AFYHDRHSF---------EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 D+ + + E L E++RLLYVALTR+ L Sbjct: 803 IMLDDKFGLCPQVKPPHTGQRYPSLPYWLARQRQKQEMLGEEMRLLYVALTRARDTLILT 862 Query: 817 VAPLVRRRGDKKGDTDVHQSA--------LGRLLQKGEPQDAAGLRT--------CIEAL 860 + + +T +A L L L+ C + Sbjct: 863 GSISEPVFNKRWLETSELTAATLLAARNFLDWLAGWCTKITGTVLKENQGRNSLFCWKVY 922 Query: 861 CDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV------------TSYSG 908 DD +T+ + ++ ++ S ++A + ++L + TS S Sbjct: 923 EDDTHLIETSPSAASEAEKMEQTSVP-MDAASWKKLQQKLSWIYPHSAATHEPAKTSVSA 981 Query: 909 LQQR-GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR--GASPGTFLHSLFEDLDFT 965 L++R I + P ++ +A + ++ + R A GT HS + + Sbjct: 982 LRRRMAEDIETEARPLFELKSANPQTKAQQRKNGNNNSERLSAAEVGTTHHSFLQMVSLE 1041 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLS-QLSARNKQVEMEFY 1024 + +R + + E + A ++ + L Q +R+ + E+ F Sbjct: 1042 RVGSVEELRREAKRLEAEQLLTVEEAGSLDFPALAAFWKSELGLRIQRQSRHVRRELAFT 1101 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 + S +A + P F + +++G DL + +L+D+K++ Sbjct: 1102 VRFSPEEVAG------------NTPKDPELFDEEFVVVQGVADLTVLLPDQIWLVDFKTD 1149 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 + T +A ++ Y+ Q QLY AL R Sbjct: 1150 RI-------TSAELAEKVKI--YEPQLQLYAQALARI 1177 >UniRef50_A4IKW7 ATP-dependent helicase/nuclease subunit A n=94 Tax=Bacteria RepID=ADDA_GEOTN Length = 1242 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 226/1275 (17%), Positives = 428/1275 (33%), Gaps = 218/1275 (17%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + ++ + G+ + ++ LLVVTFT AA AE++ RI Sbjct: 30 LVAAAAGSGKTAVLVERIIQKVTAEEGA------VDIDRLLVVTFTNAAAAEMKARIGEA 83 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + E+ ++ + L ++ A++ T+H FC ++ Sbjct: 84 LE--------------------RELANRPHSLH-LRRQLSLLNRASISTLHSFCLDVIRK 122 Query: 140 NAFESGMLFEQQLIED----------------------ESLLRYQACADFWRRHCYPLPR 177 + + ++ ++ ++ + + + Sbjct: 123 YYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNERFFAVVDAYTGDRSDAELQ 182 Query: 178 EIAQVVFETWKG---PQALLRDI-----------------NRYLQGEAPVIKAPPPDDET 217 E+ ++E + P L D+ RY+ A + A Sbjct: 183 EMILALYEFSRSHPAPDEWLADLVSMYDVDEQTNVETLPPARYIAQHAAMELAAAKRFIG 242 Query: 218 LASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEET 277 LA A+ + +++ R+ + + L + + Q+ ++ + Sbjct: 243 LALALAEKESGPKPYEKRLREDMDLIADLERRLSGSWDELYHALQSLSFGRLPP-CRGDG 301 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAE 334 +L + + L D+ K E R +F + V I + Sbjct: 302 FDAELIDE-----AKSLRDQAKKKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRR 356 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEV-------LAAAIRTRFPVAMIDEFQ 387 KR +G + F D+ LR E A + +F ++DE+Q Sbjct: 357 FSAMFEAAKREKGIVDFSDLEHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQ 416 Query: 388 DTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------- 439 DT+ Q I + + T L ++GD KQ+IY FR A+ ++ A Sbjct: 417 DTNLVQETILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGM 476 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK---SAGKNQALRFVFKGETQ 496 L +N+RS +++ N LF+Q + + + A + V + Sbjct: 477 KIDLASNFRSRAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGADYPEGTDAVPEVMII 536 Query: 497 PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 + + E + +++ A +I++ + + + R DI V Sbjct: 537 DRQRTSEEDEEETAELEAAELESRLMAEKIKEIVS--RPFYVYDRSSGQQRRAMYRDIVV 594 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 LVRS A Q+ + L IP+ F+ E ML LL+ + P ++ L + L Sbjct: 595 LVRSMTNAPQMIEQLQAQGIPAA-ADLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVL 653 Query: 617 ATSMMGLNALDIETLN-----------------------NDEHAWDVV---VEEFDGYRQ 650 + + + ++ + +E+A + + + + +R Sbjct: 654 RSPLFRFDENELAMIRLSDPKGTFFEALQAFCQKTAETGEEENAKEKAISFLNKLEEWRT 713 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVR 709 + R+R + ++ L + + A GG++R ++ + + Q T +R Sbjct: 714 MARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFLR 773 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN---FRVQEQA 766 ++ + L+ + L + +V+++TIH SKGLE+P+V+L + R Sbjct: 774 FIER--LQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPIVFLVGLARPFYTRDLHSP 831 Query: 767 FYHDRH----------SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 + D+ E LAE++R+LYVALTR+ L Sbjct: 832 YLLDKELGFAARFVHPRLRISYPTLPLLAIQVKKRLELLAEEMRILYVALTRAKEKLYLL 891 Query: 817 VAPLVRRRGDKKGD-----------TDVHQSALGRLLQKG-------------------- 845 + + +K DV SA L G Sbjct: 892 ASVNDADKEIEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDGRSLVEVNRPDE 951 Query: 846 ----------EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 E AA LR + +D A + + Sbjct: 952 IASHPSVWRFEIVSAAKLRNAEVSTDREDGGALVALEQGRPVPTQGEWEEEARRRLLWRY 1011 Query: 896 LPGDNWRV---TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPG 952 G V S S L+++ + L G A + P + A G Sbjct: 1012 RYGKETVVRAKQSVSELKEQQALFGEQADEWL--PRKGTAPLFSRPRFMQEKTLTPAEKG 1069 Query: 953 TFLHSLFEDLDFTQPVDPNWVREKLELG-----GFESQWEPVLTEWITAVLQAPLNETGV 1007 T LH + LD P+D + +R ++ Q E V I A + G Sbjct: 1070 TALHVVMRHLDLHAPMDESSIRSQIIRLVEKELLSAEQAETVDAAAIVAFFATDI---GR 1126 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 L + E+ F L + D L S +++G +D Sbjct: 1127 RLCAAREVYR--EVPFSLGLP-------ADELYGSEGMESGRRL---------LVQGVVD 1168 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 VF E Y ++DYK++ + + ++A + RY Q +LY A+ + R +A Sbjct: 1169 CVFADERGYVVIDYKTDEVTGRFAGQKEEATRFLLG--RYGGQMRLYRRAIEQIWRVPVA 1226 Query: 1128 D-YDYEHHFGGVIYL 1141 + Y Y G +L Sbjct: 1227 ECYLYSFD--GEYFL 1239 >UniRef50_Q88U41 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus plantarum RepID=ADDA_LACPL Length = 1249 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 213/1268 (16%), Positives = 413/1268 (32%), Gaps = 231/1268 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR-- 75 L+ ASAG+GKT + +R +L +++LLVVTFT A ++ + Sbjct: 21 NLLVSASAGSGKTTVLIERIMRKILAGT---------NIDQLLVVTFTNLAAKHMKQKLE 71 Query: 76 --IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 I I +L +TT +P A + L + A + T+ FC Sbjct: 72 SQINKRISQLMTDNPAQTTASP--------------AIRQLRQQLNLLGVANISTLDAFC 117 Query: 134 QRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQ 191 R++ + + +L+ D E LL D R Y + ++ + Sbjct: 118 LRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLTANFSN-D 176 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW---RDAVGELDALIE 248 ++R + ++ P + L+ + + + + L ++ Sbjct: 177 RSDDGLSRLIFRLFDFAQSTPDPEGWLSKLPEPYQVDEEALTASAFYQQQLLPLLINEVD 236 Query: 249 SSGIDRRKFNRSNQAKWI--DKISAWAEEETNSYQLPESLEKFSQRFLE----------- 295 + R+ + + + A + L E L S L Sbjct: 237 GMQMKLRQAQKVATDADLVPKTLEVLATAQKTLTTLREQLATASWNELRTQVATFKIGAL 296 Query: 296 ---------------------DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL-- 332 D K T F A +Q + + + ++T + Sbjct: 297 KKTYKDEPEKTARAKTMGTFVDGVKKQMTTLSETYFAADEQQVLDIMVGAKSIVTELVDA 356 Query: 333 -AEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDEFQDT 389 + + A EKRRR L F D+ L +ES + A +R +F M+DE+QD Sbjct: 357 TKQFKTAFAAEKRRRHVLDFSDLEHLTLQILTSDNESSQAALAQLRAQFEEVMVDEYQDI 416 Query: 390 DPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTL 443 + Q I + + QP + ++GD KQ+IY FR AD ++ + L Sbjct: 417 NSLQESILQLLARDQPG-NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEHGERIVL 475 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFM----FREIPFIPVKSAGKNQALR-----FVFKGE 494 N+RS + + N +FSQ DA + + E ++ + +++ E Sbjct: 476 AENFRSVANVDHLTNLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQTE 535 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 T + + + + + D + A +I Q + RP R SD+ Sbjct: 536 TDKSTEDVSTDETNFSIDDPAVGSITMVAQKILAL--KAQDKPIYERANGEYRPFRYSDV 593 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 ++LV +R + D IP V +++ + F+T E + M+ LL + P ++ L + Sbjct: 594 ALLVPTRNHNLTIIDVFKRYHIP-VVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVA 652 Query: 615 ALATSMMGLNALDIETLNNDEH-----------------------------AWDVVVEEF 645 L + ++GL+ + L + + + Sbjct: 653 VLRSPIVGLDENQLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQL 712 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESE 704 +R + R+ ++ ++ + + + G++R ++ + E + Sbjct: 713 TEFRDLARRNQIVTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGL 772 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 VR++ + + + E+D V ++TIH SKGLEYP++++ + Q Sbjct: 773 FQFVRFIRRM---QEKDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQT 829 Query: 765 QAF---YHDRHSFEAVLDLNAAPE----------SVDLAEAERLAEDLRLLYVALTRSVW 811 DR + + L+ + + + AE++R LYVA+TR+ Sbjct: 830 DTRSSALLDREAGIGITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQ 889 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI-----------EAL 860 L +K GR+L A + Sbjct: 890 QLYLVGTIKDIDTATEKWRQAFASD--GRVLSAQARIAATNQLDWVGMAVMRHPAMKAYW 947 Query: 861 CDDDIAWQTAQTGDNQPWQVNDVSTA----------------ELNAKTLQRLPGDNWR-- 902 D+ ++ ++ D +T EL + + R Sbjct: 948 GDEWPNYELTDDPTKLAVELGDATTVLAEQSEAVTDTQPDALELVEQQVTIDVDQVTRDY 1007 Query: 903 -----------VTSYSGLQQRGHGIAQDLMPRLDVDAAGV-ASVVEEPTLTPHQFPRG-- 948 S + + + + D +V + + +F G Sbjct: 1008 LTTLLNFHYPHQASTTTTAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSL 1067 Query: 949 --------------ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWI 994 A G+ H + E LD T+PV+ V+ ++ + + I Sbjct: 1068 ELPQFLQTTQAPTSAEVGSATHLVLEQLDLTKPVNETTVQSTIDGLVANRVLTTNVAKLI 1127 Query: 995 TAVLQAPLNETGVSLSQL--SARNKQVEMEF--YLPISEPLIASQLDTLIRQFDPLSAGC 1050 ++ + SQ+ + E+ F +P + Sbjct: 1128 AVDTIVAFYQSALG-SQILDNPAKVHREVPFSLLIPARQIFDVD---------------- 1170 Query: 1051 PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 E + ++ G ID L DYK++ + + RY Q Sbjct: 1171 ---EHETGKVLIHGIIDGYLETADGLTLFDYKTDHV-KRPED----------LKTRYAGQ 1216 Query: 1111 YQLYTLAL 1118 +LY AL Sbjct: 1217 VKLYAAAL 1224 >UniRef50_A6BJ96 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A6BJ96_9FIRM Length = 1221 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 218/1259 (17%), Positives = 430/1259 (34%), Gaps = 219/1259 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + +L P+ V+ LL+VTFTEAA +E++ RIR Sbjct: 19 NILVSAAAGSGKTAVLVERIITMLTKDDP------PMDVDRLLIVTFTEAAASEMKERIR 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I + L E D + L + A + TIH FC ++ Sbjct: 73 LAIEKK-----------------LMEYPDN----EHLKQQATLIHNAQITTIHSFCLSVI 111 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRR------------------------- 170 + + ++ E+ L LR+ D Sbjct: 112 RDHFHAIDIDPGFRIGEEGELKLLRHDVLEDMLEEKYQEGSKRFLDFTAAYSTGRNDKKI 171 Query: 171 -----------HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA 219 YP + ++ P + + ++ I+ D + L Sbjct: 172 EDLILKIYEFSRSYPDSEAWLDSCVKAYEIPDVKALEGSSIMKKVMTDIRKNLEDAKELL 231 Query: 220 SRHAQIVARIDTVK---QQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 + + + ++ L + + + +I+A ++ Sbjct: 232 IYAENVALSPEGPAVYEATLEKDLQVIEELCNRA--SYKSLAEAFSNVKWARIAA--NKD 287 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAE 334 + L K + ++ K +E+ ++L+ + + + + Sbjct: 288 KTVSEEKIDLVKKIREMVKGIVKNMSAQY---FYESPEELVEDLRVCTPAMEELADLVRL 344 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDT 389 E +KR + + F DM L ++ +A + +F MIDE+QD+ Sbjct: 345 FAERFEEQKRAQNMIDFSDMEQYALRILTQKTENGFVPSKIAEEYQKQFEEIMIDEYQDS 404 Query: 390 DPQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYT 442 + Q I + + ++GD KQ+IY FR + +++ + Sbjct: 405 NLIQEAILTSVSGCRSGRYNIFMVGDVKQSIYRFRLSRPELFLEKFRTYNIEESKTQRID 464 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMF-----REIPFIPVKSAGKNQALRFVFKGETQP 497 L N+RS ++ S N +F Q + + P +N ++ Sbjct: 465 LHKNFRSRKEVLESANAIFRQIMTEKLGGIVYDDQAALYPGAEYPENDNVKTEILVMDSD 524 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + E + + A++ A +IR+ L + + + R VR SDI +L Sbjct: 525 LEILSKEEDFEEKIPSERELEARMIAMRIRELL---RSQKVTDKETGELRNVRYSDIVIL 581 Query: 558 VRSRQEAAQVR-DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 RS + A V + L IP+ Y + F+T E ++ L+ + ++ L + L Sbjct: 582 TRSIKGFADVFTEVLNREGIPT-YAGTSEGYFQTQEIGVLMDYLRVLDNRRQDIPLTAVL 640 Query: 617 ATSMMGLNALDIETLN----------------------NDEHAWDVVVEEFDGYRQIWRK 654 +++ GL+ ++ + + + +++ D +R+I Sbjct: 641 SSAFAGLSQEELAEIRCAYPDTAFFESVTKYREQGENADIQLKLQKCLDQMDDFRKIVPY 700 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQ 713 + +L ++ + + + GG +R ++ + E + T + VR++ Q Sbjct: 701 TPMHELLWKILETTGYGDYVASMPGGAQRKANLDMLIEKARAYESTSYKGLFHFVRYIEQ 760 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 773 L+ + + V+++TIHKSKGLE+P+V + + + A Sbjct: 761 --LQKYDVDYGEASIEDEHADTVRVMTIHKSKGLEFPVVIVAGMGKRFNMQDARSAVALH 818 Query: 774 FEAVLDLNAA------------PESVDLAEA-ERLAEDLRLLYVALTRSVWHCSLG---- 816 + L+A + + EA E L E+LR+LYVALTR+ + Sbjct: 819 AGMGVGLDAVNLEYRTKIPSIIKKVIQKEEALESLGEELRVLYVALTRAKEKLIITGTLS 878 Query: 817 -----VAPLVRRRGDKKGDTDVHQSA----------LGRLLQKGEPQDAAGLR-TCIEAL 860 ++ +G+K+ + Q + L +GEP L + Sbjct: 879 NPEDKISDGRVFQGNKRKELSFLQLSHAVTYWDFILPAVLRTEGEPLKLQILHVEDVVKE 938 Query: 861 CDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRLPGDNWRVTS-----Y--SGLQQR 912 ++ + W VN++ +L+ Q + +S + + L++R Sbjct: 939 SIEEEEKSGISRAVLENWDVNEIYEPKLHDMMKEQFEFIYPYEKSSMRKLKFTVTELKKR 998 Query: 913 GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR------GASPGTFLHSLFEDLD--- 963 + I D + + E QF + GA+ GT H + E LD Sbjct: 999 AYEIGLDGGEEEREEEGELLQEEPEVVPMIPQFLQEDEVLAGAARGTAYHRVMELLDMKG 1058 Query: 964 ---FTQPVD----------PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLS 1010 FT+ +W+ +++ G E + +LQ + G L Sbjct: 1059 MPEFTEDTAGEKENWKKYFMDWLDDQVRRGRIEEDAARCICW--EDILQFAKSGIGRRLR 1116 Query: 1011 QLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLV 1069 + + + E F L I + P E +++G ID Sbjct: 1117 EADGKQRLWREQPFVLGID------------------ARELYPEEEDGELILVQGIIDAY 1158 Query: 1070 FRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 F +LDYK++ + A RY Q + Y AL + ++ + Sbjct: 1159 FEEPDGLVVLDYKTDKVR-----------RKEELAERYQEQLRYYAKALEQMTGKKVKE 1206 >UniRef50_C0BDK3 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BDK3_9FIRM Length = 1214 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 235/1260 (18%), Positives = 445/1260 (35%), Gaps = 204/1260 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + L P+ V+ +L+VT+TEAA AE++ R Sbjct: 17 DHNILVSAAAGSGKTAVLVERIIARLTRDAN------PVDVDHMLIVTYTEAAAAEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I +E ++P E L + A + TIH FC Sbjct: 71 IGAAIE-------KELEEDPSSEH--------------LKRQSALIHTAKITTIHSFCLS 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ + ++ E+ L L+ + + + V G + L Sbjct: 110 VIREYFHTIDLDPGFRIAEEGELKLLKQDVMKELLEAKYEEGNEDFLRFVETFATGREDL 169 Query: 194 LRD--INRY--LQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIES 249 + I+R G P + D + + I+ V + R V ++ L+E Sbjct: 170 QVEEIISRLYEFAGSYPDPEEWLDDCARMYEESGEKAIYIEKVMEYIRRTVADMQMLMEK 229 Query: 250 SG-----------------IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 + D++ + AK +++ +E+ L + Sbjct: 230 ADQICMEPDGPYMYGEMLEADQKVLRKLFAAKSYEEMYEALKEKPAWKTLSRKKDDAVDP 289 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV----------ITRALAEIRETVARE 342 ++ +A +T + + + + +P S + + + E + +A + Sbjct: 290 TKREQVRAYRDTWKKLIDDIRNNYFFQPPSEMEADRKICIPVMHELVSLVKEYQRVLAAK 349 Query: 343 KRRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 K + + F DM L + +A + F MIDE+QD++ Q I Sbjct: 350 KAEKNLIDFRDMEQFALQILTRKENGKRVPSEVAKEYQNTFEEVMIDEYQDSNLIQEAIL 409 Query: 398 RRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNWRSA 450 + + E L ++GD KQ+IY FR + +M+ + L N+RS Sbjct: 410 TSVSRISRGENNLFMVGDVKQSIYRFRLSRPELFMEKFNTYSLTYGGNRRIDLHKNFRSR 469 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 ++++VN +F Q + R I + + + K ET+ + E E G Sbjct: 470 AEVLDAVNFIFRQIMTEELGR-ITYDENAALYVGASYPESEKNETEILLLDTKSEEEDTG 528 Query: 511 VG------DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + + ++ A +I + ++ Q + RP+R DI +L RS Sbjct: 529 LSVRSGSQTAKELEVRLIAQRIGELMENQQ---IVDKETGMLRPIRYQDIVILTRSPAGW 585 Query: 565 AQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 V L IP V + D FETLE M+ L+ + ++ L + L + + Sbjct: 586 TDTVTRILQDEGIP-VLAESADGYFETLEIGWMMDYLRVLDNFRQDIPLVAVLKSPFGRM 644 Query: 624 NALDIET---LNNDEHAWDVVVEEFDG-----------------------YRQIWRKRGV 657 ++ LN + + V+E D +R+ + Sbjct: 645 TNEELAQIRELNAEVPFYQNVLETADPEKKTDLPAGILKKVRDVFGWLFYFRERIPYTAI 704 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHIL 716 +L +M + + A GG+ R ++ + + T + + VR++ Q L Sbjct: 705 HDLLWEIMKKTGYRDYIAAMPGGKGRRANLDMLITRAKAFEATSYKGLYHFVRYIDQ--L 762 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRH 772 + + + + V++++IHKSKGLE+P+V + + H Sbjct: 763 KKYNVDFGEAGLYDEQTDAVRLMSIHKSKGLEFPVVIVTGMGKRFNIQDTTASVVIHPDL 822 Query: 773 SFEA-VLDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLG------- 816 F +DL +S L + E L E+LR+LYVALTR+ L Sbjct: 823 GFGIDAIDLERRTKSPTLLKKVIQNEIGLENLGEELRVLYVALTRAKEKLILTGTVPHAA 882 Query: 817 ----VAPLVRRRGDKKG--------DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD 864 L + K+ T + L ++K E ++ L + + Sbjct: 883 DKLEACQLEQENSQKETLDFTKLARATSYYDWILPAAVRKTEEVPIELKVIGVDTLVEGE 942 Query: 865 IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY----------------SG 908 + + A + + + + + T +R SY S Sbjct: 943 VDKEAADYLEKEVFLEKIEAEEHPMSVTDERFRAKIEEAFSYRYPYQGEDQLKMKYTVSE 1002 Query: 909 LQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV 968 L++ ++ L + V + + + +GA+ GT H + E LDF++ Sbjct: 1003 LKKYAAASEEEDGEILIPEEEIVPILPN--FMKEEEEVKGATKGTAYHKVMELLDFSKIY 1060 Query: 969 DPNWVREKLELGGFESQWEPVLTEWIT--AVLQAPLNETGVSLSQLSARNKQ-VEMEFYL 1025 + +RE +E E + I +++ G + + E F L Sbjct: 1061 TMDLLRENIENLKNEGYLDAGTAGCIQKKEIMEFLNTNVGKRMQNAARAKTLYREQPFVL 1120 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 + ++F P + +++G ID F +G +LDYK++ Sbjct: 1121 GVD-----------AKEFYPDQKKGEMV-------LIQGIIDAYFEEDGEIIVLDYKTDR 1162 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF-LR 1144 + A RY Q +LYT AL + +R ++ + +IY F LR Sbjct: 1163 V-----------QTEAELKDRYREQLRLYTKALEQIIRKKVKE--------QIIYSFTLR 1203 >UniRef50_Q0TV46 ATP-dependent helicase/nuclease subunit A n=12 Tax=Clostridium RepID=ADDA_CLOP1 Length = 1271 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 229/1310 (17%), Positives = 460/1310 (35%), Gaps = 258/1310 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++++ P+ +++LLVVTFT AA +E+R RI Sbjct: 19 NLLVAAAAGSGKTAVLVERIIKMITE------GENPVDIDKLLVVTFTNAAASEMRERIG 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I + +K +++ L ++ A++ T+H FC ++ Sbjct: 73 DAISKAL---------------------EKDPSSEALQRQLALLNRASITTMHSFCLEVI 111 Query: 138 NLNAFESGMLFEQQL--IEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA--- 192 N + ++ + L++ AD + Y E + + E + G ++ Sbjct: 112 KNNFHLIDLDPGFRIGDQTECELIKQDILADLF-EDMYAKDDECFKDLVEAYGGSKSDDN 170 Query: 193 ----LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR--IDTVKQ------------ 234 +L+ N + G P +E + ++ + I+ +K+ Sbjct: 171 LNSIILKFYNFIMSGPWPETWLKDKVEEFNINSIEELEGKKWIEVLKESIILDLNNAYSM 230 Query: 235 --QWRD--------------------AVGELDALIESSGIDRRKFNRSNQAKWIDKISAW 272 Q RD V EL + + + + Sbjct: 231 LTQARDIAEMGGGLEPYLVNIYPEIIQVEELRIALSEGIVKFYNKLMGASFGRLKSVRKA 290 Query: 273 AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL 332 + ++ + + +SL S++ +E+ ET + ++ + LVI Sbjct: 291 SVDDERALEKAKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLMKCLSGLVI---- 346 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE------VLAAAIRTRFPVAMIDEF 386 E +KR + L F+D+ L + E +A + +F ++DE+ Sbjct: 347 -EFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFEEVLVDEY 405 Query: 387 QDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMK------ARSEVHA 439 QD++ Q I + E + ++GD KQ+IY FR A+ +++ + + Sbjct: 406 QDSNTIQETIVGMVSRRDVENPNVFMVGDVKQSIYKFRQANPELFLEKYINYREFEDSNR 465 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS----AGKNQALRFVFKGET 495 L N+RS ++N VN +F + E+ + ++ A + + E Sbjct: 466 KIMLYKNFRSREEIINGVNYIFKTLMSNTVG-ELEYDEKEALNLGASYGELNEENVEKEY 524 Query: 496 QPAMKMWLMEGE-------SCGVGDYQ---------------STMAQVCAAQIRDWLQAG 533 ++ + G+ G +Y+ A++ +I++ + Sbjct: 525 IDEIENLKVAGDIELNILNKAGNKEYRDDDELGEEEEDLDSIQLEARIIGKKIKELMNPE 584 Query: 534 QRGEALLMNGD--DARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 ++ + D R ++ DI +L+R ++ A D L IP VY F+T Sbjct: 585 DGSHYMVFDKDLGKYRRIKYKDIVILLRATKNWAETFVDELGTYGIP-VYADTGTGYFQT 643 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL---DIETLNNDEHAWDVV------ 641 +E + +L LL + P ++ + SAL + + + D+ LN D++ ++++ Sbjct: 644 IEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADLRLLNKDKYFFEIIKEVVDG 703 Query: 642 -----------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 ++ + +R+ + + L S + + G +R Sbjct: 704 IYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLYSDTSYYGYVGTMPNGVQRQ 763 Query: 685 TDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 ++ + + Q T + + ++++ L+ S L ++++V+I++IHK Sbjct: 764 ANLRILFQRAKQYESTSFKGLFNFINFINK--LKKSSGDMGSAKILGENENVVRIMSIHK 821 Query: 744 SKGLEYPLVWLPFIT----NFRVQEQAFYHDRHSF---------EAVLDLNAAPESVDLA 790 SKGLE+P+V L ++E H+ D Sbjct: 822 SKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVKKRIKYDTLQKHAIKKKC 881 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA-----LGRLLQKG 845 E E L+E++R+LYVA TR+ + A + + S G +L+ Sbjct: 882 ELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENWCKASASSGDNRINPGNVLKGK 941 Query: 846 EPQDAAGLR-------TCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL--------NA 890 D + I + + DI T D W +EL Sbjct: 942 SYLDWICMALTKHKDGDAIRNIGNGDI---TLNLDDKSNWSFKSWDRSELLETNNNKKEK 998 Query: 891 KTLQRLPGDNWRVTS-----------------YSGLQQ--RGHGIAQDLMPRLDVDAA-- 929 + +NW + S Y ++ I+ + R + Sbjct: 999 NNIDIFESNNW-IESKKDIKEVIEIRDRLGFKYKYIESCNTPSNISVTELKRAHQEEEFM 1057 Query: 930 -------GVASVVEEPTLTPHQFPR----------GASPGTFLHSLFEDLDFTQPVDPNW 972 S E + PR A GT H + + +D + + Sbjct: 1058 QESYNIIDNESNEENKKEKIKRKPRFMEERQEEFSAAKKGTITHFVMQHIDLDKVTYIDE 1117 Query: 973 VREKL-----ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLP 1026 +RE++ + E + + V I ++ L + L+ + K E+ F Sbjct: 1118 IREEVLKMVKKELLTEEEGKVVNVFKIQKFFKSDLGQRM--LNSYKSGKKVYRELPFITE 1175 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 I +I LD P + + + L+G ID F E Y LLDYK++++ Sbjct: 1176 IPSSIIEKNLD--------------PKIYGEEKVRLQGIIDAFFEEEDGYVLLDYKTDYV 1221 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 E ++Y +Q LY L++ L + + Y Y + Sbjct: 1222 KEG---------EEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYL 1262 >UniRef50_B6G1B8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1B8_9CLOT Length = 1256 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 207/1305 (15%), Positives = 439/1305 (33%), Gaps = 242/1305 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 G L+ A+AG+GKT + + ++L + +++ LVVTFT AA +E+R R Sbjct: 18 DGNLLVSAAAGSGKTAVLVERIISMILDT------EEKVDIDKFLVVTFTNAAASEMRER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I +P E L ++I +++A + TIH FC Sbjct: 72 IGDAISTAL-------EKDPSNEHLQKQI--------------LFLNKANITTIHSFCLD 110 Query: 136 MLNLNAFESGMLFEQQL--IEDESLLRYQACADFWRR----------------HCYPLPR 177 ++ N + ++ + L+ +A + + L Sbjct: 111 VIKNNIHLITLDPNFRIGDTTECQLIAQEAIDEVFEELYEQGYLGDENSEKGKRFLKLID 170 Query: 178 EIAQVVFE---------------TWKGPQALLRDINRYLQGEAPVIKAPPPD----DETL 218 A+ + ++ P+ L + + ++ Sbjct: 171 SFAERNGDNQVQSLIMSIYNFAMSFPNPEKWLNESADAFLVDDDFDFTSSKWGRIVINSV 230 Query: 219 ASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFN--RSNQAKWIDKISAWAEEE 276 + IV ++ +GE++ + + R S W D I A E Sbjct: 231 KTEIEDIVGNMEKALATVHPYLGEIENIQKIITESERIDVVYNSLDKGWDDFIKAIGEFY 290 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPL--FEAIDQLLAEPLS-----------I 323 Y+ + ++K + + K E + + + + ++ S Sbjct: 291 PEDYRKGKKIKKDDPDEMREAWKIATEYRKEAIESMKKVAEMYKNRYSKDIKKEIDMSYP 350 Query: 324 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTR 377 I+ A+ E + KR +G + F+D+ L E A Sbjct: 351 IVRAISDAVLEFWKKFEEAKRDKGIIDFNDIEHFALEILVDEDENGRQIPSETAKRYSEE 410 Query: 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK----- 432 F +DE+QD++ Q I I + + ++GD KQ+IY FR A ++ Sbjct: 411 FKEIFVDEYQDSNLVQEAILSSIANKEMPNR-FMVGDVKQSIYRFRQAKPEIFLHKYETY 469 Query: 433 --ARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRF 489 + + L N+RS ++++VN +F + E + G + Sbjct: 470 STEKDKDGRKIMLYKNFRSRKNVLDAVNFIFENIMSKELGEIEYNDDEKLNPGAVFEECY 529 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQ-----------STMAQVCAAQIRDWL---QAGQR 535 + + ++E ++ + A+ I++ + G+ Sbjct: 530 EENAIVGGSCDVHIIEKKANENLTDEQLEEEEDLDNIQIEARAIGKIIKEIVGKNSDGKI 589 Query: 536 GEALLMNGDDARPVRASDISVLVRSRQEAAQVR-DALTLLEIPSVYLSNRDSVFETLEAQ 594 R + DI +L+R+ A V + T ++IP VY F+T+E + Sbjct: 590 QMVYDKEEKRYRQAKYKDIVILLRATSNWASVLTEEFTNMDIP-VYADTGTGYFDTIEIK 648 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL---NNDEHAWDV----------- 640 ++ LL+ + P ++ L + L + + ++ + N + ++ Sbjct: 649 TIVSLLKVIDNPMQDIPLLAVLKSPIYNFTPEELIDIRIVNRNVSFYEAMKIYASFDDCD 708 Query: 641 ------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 +E D Y++ +L L + G++R ++ + E Sbjct: 709 NKKVRDFLERLDDYQERSSYLSTDELLWYLYNETGYYAYAAILPAGKQRQANLRILFERA 768 Query: 695 QE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 ++ T + + ++ + L+ + + L + +V+I++IHKSKGLE+P+V Sbjct: 769 KQFEDTSFKGIFNFINFVEK--LKKSDSDMGEAKTLSENADVVRIMSIHKSKGLEFPIVI 826 Query: 754 LPFIT----NFRVQEQAFYHDRHSFEA-VLDLNAAPESVDLAEA--------ERLAEDLR 800 + + YH + V++L + + E L+E++R Sbjct: 827 CGGMGKRFNKMDMNRGILYHHELGYGPQVVNLETRLSYPSMMKEAMKKQMVVEMLSEEMR 886 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEAL 860 +LYVA TR+ + A + +K ++ + L + +A I ++ Sbjct: 887 VLYVAFTRAKEKLIITGAVNDVEKNLQKWASNSQKVTKNNKLDRYNLLKSASFLDWIMSV 946 Query: 861 CDDDIAWQTAQTGDNQPWQVNDVS------------------TAELNAKTLQRLPGDNWR 902 + D++ + ND S E+N + R + R Sbjct: 947 AIAHKDARGILPLDSEIVEKNDESEWKFKIHQREDYTLSSEDEEEINLADVLREELTSSR 1006 Query: 903 VTSYSGLQQRGHG-------------------------IAQDLMPRLDVDAAGVASVVEE 937 YS + + + ++ +D++ + ++ Sbjct: 1007 EVDYSEIVRNRLDFKYPYQKSVEKSGSISVTEIKRLWNLEREDNLEIDINEIESSRNNKK 1066 Query: 938 PTLTPHQFPRG--------ASPGTFLHSLFEDLDFTQPVDPNWVREKLELG-----GFES 984 + +F + G+ +H + + ++ + + ++ ++E + Sbjct: 1067 TEIKRPKFIQENKDEKLSPTHRGSVVHLVMQIINMDRVSTIDEIKNQIEEFVQKEIITQK 1126 Query: 985 QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 + + V I ++ L G + + E FY I+ + L + Sbjct: 1127 EADVVNPFKIYKFFKSEL---GTRMKNADFVGR--EKAFYTEIN-------MKNLFAKEG 1174 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 ML+G ID F G LLDYK++++ E++ + Sbjct: 1175 IDYDESI---------MLRGIIDAYFEENGEIVLLDYKTDFVNEEN--------REEVVD 1217 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 RY Q ++Y + ++ + IYLF GVD+ Sbjct: 1218 -RYRKQLEIYAKVIEEITDKKVKE--------QYIYLF--GVDES 1251 >UniRef50_Q9Z7G7 Exodeoxyribonuclease V beta chain n=5 Tax=Chlamydophila RepID=EX5B_CHLPN Length = 1050 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 242/1161 (20%), Positives = 447/1161 (38%), Gaps = 163/1161 (14%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 +QG+ +EASAGTGKTFTI + LR L+ + VE L +TFT A+T EL+ Sbjct: 13 IQGKFFLEASAGTGKTFTIEQIVLRALIEGSLT-------HVEHALAITFTNASTNELKV 65 Query: 75 RIRSNIHELRIACLRETTDNPL-YERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 RI+ N+ + P L+ + Q + A +D+ ++FTIHGFC Sbjct: 66 RIKDNLAQTLRELKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFC 125 Query: 134 QRMLNLNAFESGMLFEQQLIEDESLLRYQAC----ADFWRRHCYPLPREIAQVVFETWKG 189 +L ++ ++ + + L+ + D W+ + + V + Sbjct: 126 NFVLEQYFPKTRLIHKNPALTHSQLVLHHITNYLKQDLWKNVLFQEQFHLLAVRYNVTSK 185 Query: 190 PQALL--RDINRYLQGEAPVIKAPPPDDETLASRHAQIV-ARIDTVKQQWRDAVGELDAL 246 + L + + Y Q + + E ++ H QI + ++ KQ + D + Sbjct: 186 HTSSLVDKLLASYTQPISSYFSSRVERLEQISLWHQQIYNSLLEIPKQVFLDQLTA---- 241 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 SG ++ F+ + + +E ++ + + E F+ + R K Sbjct: 242 -HISGFKKQPFSILDDLHHFVDLLYTSETHSSLFSFFKIAETFNFKHRLARYKPCAAFTV 300 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 +++ L D + L +++E + + L D+ + L+ L S Sbjct: 301 LENMSWVERTLE--FCNLDRIFNTLLVDLQEYLKQ--NYTPWLSPDESVFALEKLLSSSE 356 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP-ETALLLIGDPKQAIYAFRGA 425 + + A+R ++ + +IDEFQDTD QQ+ IF ++ +L LIGDPKQ+IY +R A Sbjct: 357 AQPVVQALREQYQLVLIDEFQDTDKQQWSIFSNLFISPKFTGSLFLIGDPKQSIYEWRSA 416 Query: 426 DIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP-FIPVKSAG 482 D+ TY+ A+S L N+RS P ++ ++N++F + F EIP ++P++ Sbjct: 417 DLPTYLTAKSSFSEDKQLQLVNNYRSTPKLMEAINQIFGKIS---PFLEIPGYLPIEYHA 473 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 N F+ + + E I+D EAL + Sbjct: 474 LNPQSSETFENPPHAPIHFFFYE-------------------TIKDQ-ALWIFSEALRLQ 513 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM-LWLLQ 601 + P+ ++ VLV +A ++ IP V S S+F E + LL+ Sbjct: 514 KEQKIPL--GNMVVLVSDSNQAFELISY---ATIP-VSFSKNKSIFHLTETHILTTALLE 567 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A++ PE + L +S+ GL+ ++ T D + F G++ Sbjct: 568 AILHPENYEKISKILFSSLFGLSLDEVTTKKEDFTIY------FQSLHSYISHHGLLATF 621 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 +M+ + L ++ G+ ++ + L + H L+ L Sbjct: 622 YRVMTTQGNV--LFSSPRGDLIFQEMEKLCGYLDTISSY--PYHQLLH-LKNFSETGRWE 676 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 D ++I TIH SKGLEY +V+ P I + + + Sbjct: 677 EELAISSYSEDLETLKITTIHSSKGLEYDIVFCPGIEKSKKNKSSS-------------- 722 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 E LR +YVA TR+ L ++ T+ + Sbjct: 723 ---------------ELLREMYVACTRAKKQLYLPISTQPPSLQRSSALTNYVKL----- 762 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 +G A L + + + + ++ L L+ P Sbjct: 763 --EGTQSSAYDLAIHL---HQEHPDLFSYSLPKDHGHATTVLNLPLLETFALKVTPPKT- 816 Query: 902 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED 961 + S+S + LD + + ++ Q P G G +H + E Sbjct: 817 -IFSFSSTKFL-----------LDTHKDSQSIPYSKLPISKQQLPLGEKTGILIHKILES 864 Query: 962 LDFTQPVDPNWVREKLELGGFE---SQWEPVLTEWITAVLQAPLNETG--VSLSQLSARN 1016 + F+ D ++ + +E + + ++ +PL + SLSQ+ Sbjct: 865 IQFSLLQDTEYLMSTIMRFIKHTHLEGFEETILKLLSKTFFSPLTFSSQTFSLSQVLPNK 924 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 E F F++ + + +G IDL F HEG+Y Sbjct: 925 IFRETSFL------------------------------FLENQELWQGVIDLFFEHEGKY 954 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 Y++D+K+++LGE +S Y++ ++ ++ + D Q ++Y A+ ++L D D E Sbjct: 955 YIIDWKTSFLGETNSDYSKSNLSIYIKQEKLDYQGRIYVKAVRKFLNQFEIDDDVEL--- 1011 Query: 1137 GVIYLFLRGVDKEHPQQGIYT 1157 GVI F+RG+D + G + Sbjct: 1012 GVI--FIRGIDTQ--GNGFFA 1028 >UniRef50_C0GDI3 Recombination helicase AddA n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDI3_9FIRM Length = 1229 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 231/1269 (18%), Positives = 426/1269 (33%), Gaps = 214/1269 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG GKT + +RLL PL ++ LLVVTFTEAA AE+R RI Sbjct: 19 NLLVSAAAGAGKTAVLVERIIRLL------CHEENPLDIDRLLVVTFTEAAAAEMRERIS 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + E R L ++ A++ T+H FC ++ Sbjct: 73 AAMEEKIAHSGRGD----------------------LARQLSLVNGASISTLHSFCLDII 110 Query: 138 NLNAFESGMLFEQQLIEDE---------------------SLLRYQACADF--------- 167 + M ++ ++ ++ + Sbjct: 111 RRYFYLLDMDPGFRVADEREAQMLQQQVLDQLLEDAFQSGDAAFHELAHRYGGKTADEGL 170 Query: 168 ----WRRHCY----PLPREIAQVVFETWKGPQALLRD--INRYLQGEAPVIKAPPPDDET 217 R + Y P PR+ + P+ + + + ++L + ++ Sbjct: 171 GRLILRLYRYTWSNPWPRQWLAEAATAFNVPEGVETEEGLEKWLPPLKEHLGLSLAHAKS 230 Query: 218 LASRHAQIVARID---TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 R ++ R + + + + +++ L + Q ++ A + Sbjct: 231 SLQRAGKLCNRPGGPLAYENRLLEDLEQVENLESLVAGSWDALREAWQGLDFKRLPAVKD 290 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 + + ++L K ++ L K E I +L + V+T +A Sbjct: 291 CDEELKEQVQALRKKAKEALSKIGKTFFERSAADYLREIGEL-----APLIEVLTSLVAR 345 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGE-------VLAAAIRTRFPVAMIDEFQ 387 + K+ G L F+D+ L +E A +R R+ ++DE+Q Sbjct: 346 FAGEYGQAKKMYGLLDFNDLEHHCLQILMAEDAPPGEIIPSEAAREVRARYEHVLVDEYQ 405 Query: 388 DTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------ 440 D +P Q I + T L ++GD KQ+IY FR D +++ A Sbjct: 406 DINPVQDAILTLVSRQGETTPNLFMVGDVKQSIYRFRLGDPGLFLERYRRYPAEKGKKER 465 Query: 441 -YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM 499 L N+R G+V +VN LF Q + + + + Sbjct: 466 KLLLSKNFRCRHGVVTAVNYLFRQLMTTQAAELEYDREAELVCGAHYPEPSQECKISGLV 525 Query: 500 KMWLMEGESCGVGDYQ-----------STMAQVCAAQIRDWLQAGQRGEALLMNGDD-AR 547 + L+E E G D Q A V A QI L + + R Sbjct: 526 DVHLLEREQDGDHDRQGDDEGEDLDALEREATVIAGQILVLLNGPDGARYVFDKEEKAYR 585 Query: 548 PVRASDISVLVRSRQEAA-QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 PV DI +L+R+ +A ++ + L IP+ Y F E + ML LLQ V P Sbjct: 586 PVTYRDIVILLRATSNSANRLVEILARHGIPA-YADLSSGYFAATEVETMLSLLQVVDNP 644 Query: 607 ERENTLRSALATSMMGLNALDIETLN----NDEHAWDVVVEE------------------ 644 ++ L + L + ++GL D+ + ++ +D V+ Sbjct: 645 RQDIPLAAVLRSPLVGLTVEDLAAVRQAGERNDDFFDAVLAASQQQFPGLSEKLTDFLTT 704 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT-QLES 703 + +R + R+ + + A+ ++ + G +R ++ + ++ + Sbjct: 705 LERWRTLARRETLATFITAVYRESGYSDYVAGLPDGAQRQANLRALFSRARQFDRFARQG 764 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN-FRV 762 + ++ Q + +++ L +++V+I++IHKSKGLE+P+V L + F Sbjct: 765 LFRFLSFIEQLRRSGEDLGTARA--LGEKENVVRIMSIHKSKGLEFPVVILGDLGKTFNF 822 Query: 763 QEQAFYHDRHSFEAVLDLNAAPESVD------------LAEAERLAEDLRLLYVALTRSV 810 Q+Q H + L PE + EAE AE++R+LYVALTR+ Sbjct: 823 QDQRSEMLVHRRLGLGPLIVEPEKKLRYPSLPYLALKIMGEAETRAEEMRVLYVALTRAR 882 Query: 811 WHCSLGVAPLVRRRGDKKGD-------TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 L + + + + S L R + A +R + Sbjct: 883 EQLILVGSARGLDKHLESWRQLLAHCGEQLPASELTRARTYLDWLGRALIRHGDVEGRTE 942 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAELNAKT------LQRLPGDNWRV-------------- 903 WQ + + + S +E+ K +R + R Sbjct: 943 TYTWQAGEESRFRLTVWDRESLSEIAVKREGEEEYTKRDAILSLRRVKVDTADDLREEIR 1002 Query: 904 ------TSYSGLQQRGHGIAQDLMPRLDVDAAGVAS--VVEEPTLTPHQF---PRG---A 949 Y+ L +L R + + F G A Sbjct: 1003 TRLAYKYPYARLDLPAKLSVSELKRRFSELEEEEGEKKAFTPTSWSRPAFIQQKAGLSPA 1062 Query: 950 SPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITA-VLQAPLNETGVS 1008 G H + + LD + +D + ++ T+++ ++ A Sbjct: 1063 ERGILYHQVLQHLDLSLSLDERGIEGQIHYLQKAGVLAEEATDYLDPGLIAAFFTSEAGR 1122 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 + Q E F L + IA+ G L +++G IDL Sbjct: 1123 VVQKYRSEVYREWPFTLSLPAAEIAT------------GNGDESL-------IIQGIIDL 1163 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI-A 1127 + R + ++DYK++ L A RY+ Q + Y A+ L + Sbjct: 1164 LVRTPQGFVVIDYKTDRLPGGG---------LNELAKRYEEQLRYYARAVETILSVPVCG 1214 Query: 1128 DYDYEHHFG 1136 Y Y G Sbjct: 1215 AYLYAFAAG 1223 >UniRef50_Q836J8 ATP-dependent helicase/nuclease subunit A n=35 Tax=Bacteria RepID=ADDA_ENTFA Length = 1264 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 216/1265 (17%), Positives = 442/1265 (34%), Gaps = 226/1265 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + + ++ LL+VT+TEAA E++ RI+ Sbjct: 28 NILVSASAGSGKTTVLVRRVI---------EKVKSGVDIDRLLIVTYTEAAAREMKERIQ 78 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + E D + + + A + T+H FC ++ Sbjct: 79 VALQKA----MNEEQD--------------PERRRHFSRQIALLPTANISTLHAFCLTVI 120 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE----------------- 178 + + +++ DE+ L + D R Y +E Sbjct: 121 RRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEAFYQLTANFSNDRSDDG 180 Query: 179 IAQVVFETWK------GPQALLRDI-------------------NRYLQGEAPVIKAPPP 213 + ++F ++ P+A + + + L E Sbjct: 181 LTNLIFSFYEFAKANPDPEAWINGLTQAYEVGDQLGESKLFQTYLKPLAVETLQRTLQRY 240 Query: 214 DDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWA 273 ++ + + + +I + Q ++ + +E + ++ +N + + + A Sbjct: 241 EEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESA-YNLTELLSFDRYPTVRA 299 Query: 274 EEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA 333 EE + + + L + +++ L D K +A+ Q+L E I + Sbjct: 300 EELKPTAEQAKQLREQNKKALNDLKKQLFTLSP----DAMKQVLKEATPIVQEM-AHVGK 354 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAA-----AIRTRFPVAMIDEFQD 388 + E EKR + + F+D+ + L + A R +F ++DE+QD Sbjct: 355 QFMEAYGAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQD 414 Query: 389 TDPQQYRIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYT 442 + Q I + E L ++GD KQ+IY+FR AD +++ ++ Sbjct: 415 INQLQESILYWLRRPLSTEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKEGKRII 474 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREI---------PFIPVKSAGKNQALRFVFKG 493 L N+RS +++ N +FSQ D + + F A +++ Sbjct: 475 LAENFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEK 534 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 + +++ ++ + D V A +IR+ + Q RP+ D Sbjct: 535 KATESVEFPELQSPELLIEDKTEGELYVTALKIRELID--QNFLIYDKKLKTDRPITYQD 592 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I +L +++ + D LEIP V +++ + F+ E + M+ LLQ + P ++ L Sbjct: 593 IVLLTPTKKNNLTILDVFKSLEIP-VQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPLA 651 Query: 614 SALATSMMGLNALDIE--TLNNDEHAW------------------------DVVVEEFDG 647 + L + ++GL ++ L N E ++ E + Sbjct: 652 AVLRSPIVGLKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEK 711 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHA 706 +R+ R+ + +L + + + G++R ++ + + T Sbjct: 712 WREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQ 771 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN-FRVQEQ 765 VR++ + + + + + S+++ V+++TIH SKGLE+P+V++ +T F V + Sbjct: 772 FVRFIEKM---QEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDL 828 Query: 766 AFYHDRHSFEAVLDLNAAPESVDLAE------------AERLAEDLRLLYVALTRSVWHC 813 + V PE + + + L+E++R LYVALTR+ Sbjct: 829 NERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKL 888 Query: 814 SLG------------------VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 L V LV ++ + +G L + + D Sbjct: 889 FLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEV 948 Query: 856 ---------------CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD- 899 I+ ++ + Q + + A+L+A + R Sbjct: 949 VVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARL 1008 Query: 900 --------NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE----------EPTLT 941 R TSY + + + + ++ E L+ Sbjct: 1009 SFNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLS 1068 Query: 942 PHQF------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW-- 993 +F P A GT H L + +D ++ VR E P + E Sbjct: 1069 KPKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMN 1128 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 + ++ G L Q + + E F +++ + + L P Sbjct: 1129 LEQIVAFFDTALGKQLIQ-HHQTVRREQPF--------------SMLIEAEELIQNYPET 1173 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 + ++ G ID + + L DYK++ + + QA++ + RY Q L Sbjct: 1174 TQDDL--LIHGIIDGYIELDNQCILYDYKTDHVKGT----SPQAISEIV--ERYRGQMNL 1225 Query: 1114 YTLAL 1118 Y AL Sbjct: 1226 YRRAL 1230 >UniRef50_A5HYY0 ATP-dependent helicase/nuclease subunit A n=11 Tax=Clostridia RepID=ADDA_CLOBH Length = 1279 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 220/1315 (16%), Positives = 450/1315 (34%), Gaps = 276/1315 (20%) Query: 29 KTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACL 88 KT + + +L G P+ +++LLVVTFT AA AE+R RI I + Sbjct: 31 KTAVLVQRIIEKILDKG------EPIDIDKLLVVTFTNAAAAEMRERIGDAISKG----- 79 Query: 89 RETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLF 148 L+E + + L L ++++ + TIH FC +++ N + Sbjct: 80 ------------LDEDPESKVLRKQLTL----LNKSNIMTIHSFCLQVIKNNFHTMEIDP 123 Query: 149 EQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAP 206 ++ ++ L++ +A + + + +V L+++ L A Sbjct: 124 NFRICDETEGILMKQEAIDELFDELYEIENEDFINLVESYASRKDTRLQEVVLELHRFAK 183 Query: 207 VIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV----------------GELDALIESS 250 +A + + + W D + +D ++ S Sbjct: 184 SAPFSYDWLLNMAEEF-NVGEEFNFEETPWADMIMEDMKVLLHGFKNMLQQSIDVILNSE 242 Query: 251 GIDRRKFNRSNQAKWIDKIS-----AWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 GID +I+ + E +Y P+ K ++ ++ + + Sbjct: 243 GIDYYYEPFKMDLSFINSLLEKSSFKEFRGEIIAYDFPKLPLKRNKDADKEAKERVKKLR 302 Query: 306 RH------PLFEAIDQLLAEPLSIRDLVITRALAE-------IRETVAREKRRRGELGFD 352 L +D E + + + ++ + +KR R + F+ Sbjct: 303 DKVKKKIVELKNILDSYENEFIKKEFIFLYPSMKALSNLVILFDKKYEAKKRERDLIDFN 362 Query: 353 DMLSRLDSALRSESGE------VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---- 402 D+ S L ++ E +A R +F +IDE+QD++ Q I + Sbjct: 363 DIEHLCLSILTDKNSEGHIIPSDIALDYRKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGY 422 Query: 403 ----------HQPETAL------------LLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 ++ E L ++GD KQ+IY FR A ++ +E Sbjct: 423 WSFYNGQLMFNEEEINLEEPQICLDIPNRFMVGDVKQSIYRFRQAKPEIFLDKYNEYSEE 482 Query: 441 -------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 L N+RS ++N VN LF Q M + I + + + Sbjct: 483 EGTKNRKVKLFKNFRSRKEVINGVNYLFKQ----IMSKTIGELDYTEEEALKVGASYGEE 538 Query: 494 ETQPAMKMWLMEG--------------ESCGVGDYQSTMAQVCAAQIRDWLQAGQRG--E 537 +++ LM+ + D ++ A +I+ + G + Sbjct: 539 VKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKKIQKLVGNNLEGGLK 598 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEM 596 + R ++ DI +L+R+ A + + L IP V+ F+T E + M Sbjct: 599 VFDKKLGEYRNLQYRDIVILMRATSNWAPIFVEELAKEGIP-VFADTNSGYFDTAEIKTM 657 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLN------------------------ 632 + LLQ + P ++ L S L + + ++ + Sbjct: 658 ISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNITFYECMEIIYRLYKNEKL 717 Query: 633 --------NDEHAWDVVVEE-----------FDGYRQIWRKRGVM----PMLRALMSARN 669 DE+ + ++++ F ++WR++ + + L Sbjct: 718 DSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSIHIDIDEFIWFLYVETG 777 Query: 670 IAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMR 728 A GE+R ++ + + Q A T + + ++++ L+ S Sbjct: 778 YYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFINK--LKFSSGDMGSAKI 835 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEA-VLDLNAA 783 L ++++V+I++IHKSKGLE+P+V L + + +H + +D Sbjct: 836 LGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGYGPDYVDTERR 895 Query: 784 PESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLG------------VAPLVRR 823 L + E L+E++R+LYVALTR+ + L Sbjct: 896 IAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINNMDKTVEDWLNLSED 955 Query: 824 RGDKKGDT----DVHQSALGRLLQKGEP----QDAAGLRTCIEALCDDDIAWQTAQTGDN 875 + + +G L K + ++ + + + + DD W+ Sbjct: 956 KNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFREELKMTSELSNIVDDKSKWKIELWNKR 1015 Query: 876 QPWQVNDVSTAELNAKTLQRLP---------GDNWRVTSYSGLQQRGHGIAQDLMPRLDV 926 + + ++ ++ + ++ S+ + + A + +L V Sbjct: 1016 ELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRLSF----KYKYDNASSIPTKLSV 1071 Query: 927 DAAGVASVVEEPTLTPHQFPR----------------GASPGTFLHSLFEDLDFTQPVDP 970 +++E T F + + GT +H + LD + + Sbjct: 1072 SDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISPSERGTIIHLFMQHLDLKKAENE 1131 Query: 971 NWVREKLELGGFESQWEPVLTEWI---TAVLQAPLNETGVSLSQLSARNKQVEMEFYLPI 1027 ++E++ E ++ + +L+ E G + L++ N EM F + I Sbjct: 1132 EDIKEQINRL-IEREFITYEQSKVINPYKILKFCRGELGKRI--LNSNNVNKEMPFSIEI 1188 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 I +LD I + + L +++G ID F E LLDYK++++ Sbjct: 1189 PALEIYKELDKEIYKDEKL--------------IIQGVIDCYFEEEDGLVLLDYKTDYVN 1234 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 + +RY++Q + Y AL+R + D +YLF Sbjct: 1235 D-----------IEEIKNRYEIQIKYYEEALNRITGKNVKDK--------YLYLF 1270 >UniRef50_Q3AA35 ATP-dependent helicase/nuclease subunit A n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=ADDA_CARHZ Length = 1167 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 224/1213 (18%), Positives = 431/1213 (35%), Gaps = 174/1213 (14%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG GKT + L +L P+ ++ LLVVTFTEAA E++ R+ + Sbjct: 20 LVSAAAGAGKTSVLVERVLSRVLTDTP------PVDIDRLLVVTFTEAAAGEMKERLGTE 73 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + L+ ++P R+LE+ + A + T+H FC +++ Sbjct: 74 L-------LKRLNEDPGNSRILEQ--------------LELLPVADISTLHSFCHKIIRK 112 Query: 140 NAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDI 197 G + ++E E+ L+ + + RE+ ++ + + R++ Sbjct: 113 YGRVCGYETKFAILEGPRETYLKNKVLEEILEERYEKGDRELFALL--EYLNDEKNDRNL 170 Query: 198 NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ-WRDAVGE-----LDALIESSG 251 + ++ P ++ L + + W + L+ ++E G Sbjct: 171 KELILNLYHFSRSNPEPEKWLLDSLNLFNGNWERFEDTFWYREIKSSTEMWLEYILELLG 230 Query: 252 IDRRKFNRSNQAKWIDKISAWAEEETNSY-QLPESLEKFSQRF----------------- 293 + + QA+ ++ E+ Y +L E E Q Sbjct: 231 RAKSVAEKYGQARAFSLLAEDMEKVRGLYAKLNEGYEAAKQYLSQVKFGTFSWGRGVGGK 290 Query: 294 -----LEDRTKAGGETPRHPLFE-AIDQLLAEPLSIRDLV--ITRALAEIRETVAREKRR 345 L D+ K ET + F E ++ + + + + E EKR+ Sbjct: 291 DEAKDLRDKAKEQFETIKKRYFSWEAGNFREELRTLTSYLDPLVKLVREFSRKYQEEKRK 350 Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP 405 G F D+ L+S + +R ++ ++DE+QD + Q I + + Sbjct: 351 HGFADFSDLEHWALDILKS----GVYRELREKYVEILVDEYQDINGLQEEILT--YVSRD 404 Query: 406 ETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQ 463 L ++GD KQ+IY FR A ++K + L N+RS ++ +VN +F Q Sbjct: 405 GQNLFMVGDVKQSIYRFRWARPEIFLKKYEDFTDEKKIELSLNFRSREEIIATVNFIFKQ 464 Query: 464 TD----DAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-EGESCGVGDYQSTM 518 + E F+ + A F + + + GE Sbjct: 465 IMKKRVAELSYDEKAFLKKGADYLPNANCFAELHLIEGKPEEDINSNGEPEEDLTAVHRE 524 Query: 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV-RDALTLLEIP 577 A++ AA+I + G + + RP++ DI +L RS ++ + ++ LT IP Sbjct: 525 ARLVAAKILKLKEEG--FKVFDRETKEFRPLQYRDIVILSRSLSNSSNIWQEELTRAGIP 582 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN---D 634 VY+ S + E M L+ + P ++ L + L + + GL ++ + + Sbjct: 583 -VYVEGAGSFLNSKEILLMTSFLKVIDNPCQDVPLAAVLCSPVAGLTYEELWQVRKEYPE 641 Query: 635 EHAWDVV-----------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 +D + +E ++++ R+ + ++ + N+ E A Sbjct: 642 GLLYDALKNKSLGKDELSVKSQKFLELLVEFQKLSRQISLAELVNEIYRKTNLPEIFGAY 701 Query: 678 AGGERRLTDILHISEL-LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLV 736 GGE R ++ + +L + A + + +LSQ +S S + +V Sbjct: 702 PGGEVRQANLKLLHDLAVDFAEINGGGIYNFLTFLSQ---AAESEDFSPAKLIGEADDVV 758 Query: 737 QIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEAVL---------DLNAAP 784 +++++HKSKGLE+P+V++ + F F H F A+ Sbjct: 759 RVMSVHKSKGLEFPVVFVVGLGKRFKFDYSNTVFLHSDLGFGPKFFDPEKRIRRHSIASQ 818 Query: 785 ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK 844 + E LAE++R+LYVALTR+ L V+ K AL L Sbjct: 819 ILSERMRRETLAEEMRILYVALTRAREKLILV--GTVKNLAKKMAGWQSQTEALKDTLSD 876 Query: 845 GEPQDAAGLRTCIEAL-------CDDDIAWQTAQTGDN---QPWQVNDV-STAELNAKTL 893 G+ A I + D + + + + W++ +V L Sbjct: 877 GQIARAGNFLDWIGPVVFREGSDLPDCLKVEVHPQQEKIEGEQWELPEVLRVKLLTKTPF 936 Query: 894 QRLPGDNWRV-----TSYSGLQQR---GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF 945 + +Y GL+ DL D +E L F Sbjct: 937 TEETDYTGQFRAGLEFNYPGLKIAKLPAKMSVSDLKEVFSTDDVISLEDEDEVFLPGVYF 996 Query: 946 PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWIT-----AVLQA 1000 GA G H +DF + + ++ + E E P E + + Sbjct: 997 EDGAMLGIVYHEFLRRIDFQGDLSASGLKAQGETLVAEGVLPPESREMLDFTKIARIFAT 1056 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 PL + + ++ E F L + P + Sbjct: 1057 PLGQRILRAREIYP-----EFPFTLGVK-----------------AGEIYPEATGFSEKI 1094 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 +++G IDL+ E ++++D+K++ + + + + Y Q LY A+ Sbjct: 1095 LVRGVIDLLALEEDGFFIVDWKTDRV---TGDILNERLKE------YAGQLNLYARAVEE 1145 Query: 1121 YLRHRIAD-YDYE 1132 ++ + Y Y Sbjct: 1146 ITGKKVKEKYLYF 1158 >UniRef50_Q18AN9 ATP-dependent helicase/nuclease subunit A n=7 Tax=Clostridium difficile RepID=ADDA_CLOD6 Length = 1275 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 222/1314 (16%), Positives = 470/1314 (35%), Gaps = 243/1314 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + L+ A+AG+GKT + ++++ P+ +++LLVVTFT AA +E+R R Sbjct: 18 ECNLLVAAAAGSGKTAVLVERIIQMITSR------ENPIDIDKLLVVTFTNAAASEMRER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I + D+ + L ++++++ TIH FC Sbjct: 72 IGDAIGKAL---------------------DENPENKHLQNQLVLLNKSSITTIHSFCLD 110 Query: 136 MLNLNAFESGMLFEQQL--IEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ N + ++ + ++L+ +A + + +V + Sbjct: 111 VIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLNLVESYAERGGD- 169 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQ--IVARIDTVKQQWRDAVGELDALIESSG 251 +++ + G A P + L + I D + W A+ + IE +G Sbjct: 170 -KEVQDIILGIYSFAMASPEPKKWLIDSAERFNIDENFDFSQSIWARAILDTVK-IEING 227 Query: 252 IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA----------- 300 + + + I+++ +AE+ + Y+ + + + ++ K Sbjct: 228 LCLNMERALKEVESIEELETFAEKLSVEYKKIADISQACNKSWDEAYKKMASMSFENYVK 287 Query: 301 ------------------GGETPRHPLFEAIDQLLAEPL-----SIRDLV---------I 328 +T R ++++ +++ SIR+ + I Sbjct: 288 GVKRISKDAPSYIKESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPI 347 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAM 382 + + E + +KR +G + F+D+ + L +A R +F Sbjct: 348 SSVVLRFEEEYSNKKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIF 407 Query: 383 IDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV----- 437 IDE+QD++ Q + + + + + ++GD KQ+IY FR A +++ + Sbjct: 408 IDEYQDSNLVQEVLLKAVANTETPNR-FMVGDVKQSIYRFRQAKPELFLQKYNNYNDKKG 466 Query: 438 --HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFKGE 494 H L N+RS +V++VN +F + + E + G N + K Sbjct: 467 SSHRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSI 526 Query: 495 TQPAMKMWLMEGES-----------------------CGVGDYQSTMAQVCAAQIRDWLQ 531 A ++ L++ ++ D A++ I+D ++ Sbjct: 527 IGGATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMK 586 Query: 532 AGQRGE---ALLMNGDDARPVRASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSV 587 + G+ D RPV DI +L+R+ A V D L ++IP+ Y Sbjct: 587 VNEDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPVFADELMNMDIPT-YADVGVGY 645 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV--- 641 F+T+E + +L LLQ + P ++ L S L + + G D+ + D+ ++V+ Sbjct: 646 FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705 Query: 642 ------------------------------VEEFDGYRQIWRKRGVMPMLRALMSARNIA 671 + + +++ + L + Sbjct: 706 AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765 Query: 672 ENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLE 730 + A GG +R ++ + E ++ T L+ V ++ + L+ S+ L Sbjct: 766 AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEK--LKKSSSDMGSAKTLG 823 Query: 731 SDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEA-VLDLNAAPE 785 + ++V+I++IHKSKGLE+P+V + ++ YH + +D Sbjct: 824 ENANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRIS 883 Query: 786 SVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS- 836 +A+ E L+E++R+LYVA TR+ + + + K+ + Sbjct: 884 FPSIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLD 943 Query: 837 --ALGRLLQKGEPQDA--------AGLRTCIEALCDDDI------------AWQTAQTGD 874 + +L+ D L +E + D + W Sbjct: 944 TISQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILV 1003 Query: 875 NQPWQVNDVSTAELNAKTLQRLPGDNW---------RVTSYSGLQQRGHGIAQDLMPRL- 924 + S E+ K P ++ + Y ++ I+ + ++ Sbjct: 1004 EKKSDEEKESIEEILEKIDVNNPDSDYYGEIEEKLNYIYPYEFSTRKPATISVTEIKKIQ 1063 Query: 925 -DVDAAGVASVVEEPTLTPHQF----------PRGASPGTFLHSLFEDLDFTQPVDPNWV 973 + + + ++ E+ + G GT +H + E LD N + Sbjct: 1064 NNYEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDI 1123 Query: 974 REKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033 + ++ GF S+ ++TE +++ P S + R E+ + + + A Sbjct: 1124 KSQI--RGFVSK--GIITEKQASIVN-PYKIYKFFASNIGKRMLNAEI---INREKSIYA 1175 Query: 1034 SQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 I ++ L + ML+G +D F + + L+DYK++++ Sbjct: 1176 QVNMKDIYIYEKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFV------- 1228 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 ++ + ++ Y Q LY + + + IYLF GVD Sbjct: 1229 NEENINQIIEK--YKKQLDLYADIIETLTGKSVKEK--------CIYLF--GVD 1270 >UniRef50_D0BK91 ATP-dependent nuclease subunit A n=2 Tax=Granulicatella RepID=D0BK91_9LACT Length = 1244 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 211/1261 (16%), Positives = 431/1261 (34%), Gaps = 227/1261 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + + ++ LL+VTFTEAA E++ R+R Sbjct: 25 NLLVSASAGSGKTKVLVDRIM---------GYIEDGVNIDSLLIVTFTEAAAKEMKERLR 75 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 +N+ + +I K + L L + A + TIH FC +++ Sbjct: 76 TNLEKAITKET--------------DITKKHMYIKQLSL----LPNATISTIHSFCMKVI 117 Query: 138 NLNAFESGMLFEQQLIED---------------ESLLRYQACADFWRRHCYPL--PREIA 180 + S + L+ + + LL + D R+ Sbjct: 118 RRYFYLSQLDPVFSLLNEVEGTLLKEKVWRNIQDELLEEHSWMDGLMRYFSSDRNDDGFT 177 Query: 181 QVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 +V++ + P+ + + + + + P D Q I + Sbjct: 178 TLVYQLYDFSRSKPNPKQWISSLADLYETKDEYGEIPIIKD--------QFAPYIVEELK 229 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKI----------SAWAEEETNSYQ--- 281 A EL L E +G ++ K A+ I ++ +A+ + S+ Sbjct: 230 YLVSAYDELIKLAEVTGFEKCKDVVEADAQKIQEVYTAFASGNYTAAYTLAQGVSFDRFP 289 Query: 282 -LPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD----------LVITR 330 +P+ E + ++ + +H + + E ++ L +++ Sbjct: 290 TVPKKDETTDREAVQAIKRKRDSLKKHWEDQVLATAFFESPEVQMKHLRNIYPMMLHLSQ 349 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVL--AAAIRTRFPVAMIDEFQD 388 + + E EK+ ++ F D+ S L +E VL + F +IDE+QD Sbjct: 350 VVLKFYEAFQLEKKTSNKIDFSDLEHDTLSILSTEKNGVLIAKKYYKELFTEVLIDEYQD 409 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK-----ARSEVHAHYTL 443 + Q I + E L ++GD KQ+IYAFR AD + A L Sbjct: 410 VNRVQEAILTSVAR---ENNLFMVGDVKQSIYAFRLADPSLFRDKYEAYADENGGKRIIL 466 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS +++ N +F Q D E+ I + + + +T + ++ Sbjct: 467 AENFRSRDQVLSFTNLIFRQIMD----HELGQIDYDDSAALKTGNLNYSDDTDKFSECYI 522 Query: 504 MEGES--------------CGVGDYQSTMAQVCAAQIRDWLQAGQRG--EALLMNGDDAR 547 ++ + + S A +I++ + E R Sbjct: 523 IQNANLEEEEEESSGLESESPIDSSASAEVHFIAGKIKELMANQFEIMHEESTKENPKKR 582 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 P++ DI +L ++ + + T +IP V + F+ E M+ L+ + P Sbjct: 583 PIQYKDIVILAPTKANNGLIEEIFTQYQIP-VLVQKNLQYFKRTEIAIMMSALKIIDNPT 641 Query: 608 RENTLRSALATSMMGLNALDIETLNND--------------------------------- 634 ++ S L + ++GL+ + + + + Sbjct: 642 QDIPFVSVLRSGIVGLDEIALAHIRKNNKSCSFYEACVHFVEHFTLEEVNYYDSSQQQQL 701 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 + +++ + +R I + + ++ + N + + G++R+ ++ + + Sbjct: 702 KERIKSFLDQLESWRDIANHQSISTLIWQIYMDTNYLTYVHGQSVGQQRVLNLHALYKYA 761 Query: 695 QE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 ++ + + VR++ Q ++ + ++ ++ V+++TIH SKGLEYP+V+ Sbjct: 762 KDFEDSSFKGLRNFVRFIQQ--MQHKKQDLEEPTQISDEEDAVRVMTIHASKGLEYPVVF 819 Query: 754 LPFITNFRVQEQAF--YHDRHSFEAVLDLNAAPESVD-----------LAEAERLAEDLR 800 L Q+ + PE + + + L+E++R Sbjct: 820 LMNAGKKFNQQDIRQQAIRSDELGVGVKYLQLPERIQWTTIPYVMAYKAEKNKLLSEEMR 879 Query: 801 LLYVALTRSVWHCSL--GVAPLVRRRGDKKGDTDVHQSALGRLL---------------- 842 LYVA+TR+ + + + + + D+ L L Sbjct: 880 KLYVAMTRAREKLIIVGSLKDFDKFKEEHSMIEDIDDETLPYSLRYHVDNYLTWILMATM 939 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAW-QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD-- 899 +K E E + + + W Q +T + K L L D Sbjct: 940 RKQEKVSFHQEVIDFEQIKQNALNWIQETETTSINEVEWLQKQVEGKPVKNLSNLLEDLK 999 Query: 900 -------NWRVTSY---SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-- 947 SY S +++ +P+L+ V++ + + Sbjct: 1000 QTYPYLLASTTASYQSVSEIKRMNEEPDVKQLPQLEEQTQETEKNVQQYVYLTSELAKPS 1059 Query: 948 ---------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVL 998 A G+ LH L + LD T+ + P +++E ++ E+Q+ L + + AV+ Sbjct: 1060 FIESKQKVSAAERGSGLHLLMQKLDLTKEITPEFIQETIQQL-VETQF---LEKEVAAVI 1115 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 + + EF I E + L + Sbjct: 1116 P------------VDQVYHFFQSEFGQWIQEHQALLNREQAFSHVVTAKRIFKHLPDNED 1163 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 ++ G ID + L DYK++ + TQ+ + + Y Q LY AL Sbjct: 1164 SMLIHGIIDGFVELDDEIILFDYKTDHVVP-----TQKGIQKVVDK--YKQQLNLYAEAL 1216 Query: 1119 H 1119 Sbjct: 1217 E 1217 >UniRef50_D1C5W8 UvrD/REP helicase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W8_SPHTD Length = 1125 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 235/1191 (19%), Positives = 421/1191 (35%), Gaps = 148/1191 (12%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 T + +R L +EA AGTGKT + + +L TV+EL+V+TFT Sbjct: 10 TREAIRTALDRNFFVEAGAGTGKTTVLVDRIVAILRNGHA--------TVDELVVITFTR 61 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 A AEL R+R + E R + + + L A + A + Sbjct: 62 LAAAELATRVRERLEETR------------------DTTESEEERARLEEALYALPRARI 103 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVF 184 TIH F +L E+G+ + ++D SL +A D+ P E + V+ Sbjct: 104 ETIHAFAAGLLRERPVEAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNPEDGERPEAVW 163 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 L Q P D+ A +AR + + + + Sbjct: 164 RALNRGLDLRHLREVVEQVHHHRSLLPLVHDDVPAPDIHGFLARFEQDVDELEEILARCR 223 Query: 245 ALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGET 304 + R + A E + S + +++ + Sbjct: 224 NPADHGAQQIRMLMAQRDDLRAVRNDRDALERAILHLPKISQKGARTSWVDPADCDRQKE 283 Query: 305 PRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 L EA++++ + + + ++RR G F+D+L LR Sbjct: 284 ICRELNEAVEEVKRALRAEAIAGLLPLAEDFVRGYTEQRRRTGRAEFEDLLIWARDLLRD 343 Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE--------------TALL 410 + R RF ++DEFQDTDP Q I + +P+ L Sbjct: 344 RP--EVRRYFRERFRCILVDEFQDTDPLQVEILLYLCGEEPDGVAARDWRELRPAPGRLF 401 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L+GDPKQ+IY FR ADI Y + V T+ N+RS G+++ VN F Sbjct: 402 LVGDPKQSIYRFRRADISIYEWVKRHVLPGDLCTITQNFRSLGGVIDWVNGCFQHIIAPH 461 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 + ++P+ + + + E + D + A AA +R Sbjct: 462 DGVQAGYVPL------DPWPQARLDLPRAPVVVVHHEMDG-SADDVRRYEATTLAALLRQ 514 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 + + + RP R D+++L+ SR +AL IP + R S F Sbjct: 515 AVDV-EGWPVRDPETGEIRPARWRDVAILIPSRTGIEIYEEALAEAGIPYRHEGGR-SFF 572 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND-EHAWDVVVE---- 643 + E +E++ L+A+ P ++ +AL + G + +I +D E Sbjct: 573 QRQEVRELINCLRAIDDPGDRLSMVAALRSGAFGCSDEEIFLAAEAMGTDFDYRREPPPE 632 Query: 644 ---------EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-L 693 + + + ++R ++ + E L G++ ++L + + Sbjct: 633 HAAVADGMHTLRELHTLRHRLPLPELVRRVIDETRLIEYALTLPQGDQAAANLLKVVDQA 692 Query: 694 LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 A + A VRWL S E+ +V+++TIH +KGLE+P+V Sbjct: 693 RAFAAARGGGLRAFVRWLD--TATSRSTEEEDADVAEAGDDVVRLLTIHAAKGLEFPIVA 750 Query: 754 LPFITNFRVQEQAFYHDRHSFEAVLDLNAAPE----------SVDLAEAERLAEDLRLLY 803 L + + + D L + + + + ++ + AE RLLY Sbjct: 751 LANLQGRDARTRNVIPDHAVRRLHLRVGSQDQGYFETPGYAAAAEIEKQHDAAEQDRLLY 810 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VA TR+ H L P++ +G ++ + + L RL + Sbjct: 811 VAATRARDHLIL---PVIIWKGSREKERKP-KGMLARLAPHLPVPTPDHSPNGADIDGCH 866 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR 923 + GDN + + +++ R + W + + L+Q G G+ Sbjct: 867 VLLAAHLPVGDNGLRESPPATNVDVDDVLAVR---ERWLMERAALLKQAGAGLQVTTASS 923 Query: 924 LDVDAAGVASVVEEPTLTPHQFPRGA--SPGTFLHSLFEDLDFTQPVDPNWVREKLELGG 981 ++ A ++ TP PR A + GT LH+ E LD + + E + Sbjct: 924 VE---AWDQEPADDAEATPGALPRDAALAVGTALHATMEALDLSDDGE----VESMARAK 976 Query: 982 FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 P + + A+ +A L +GV +A E F LP+ + + Sbjct: 977 AAEAGVPGHADEVAALARACL-ASGVVQRARAAERAAREAAFTLPVGDGFVE-------- 1027 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 G +DL+FR + DYK++ + T + + A Sbjct: 1028 ----------------------GRVDLLFREPDGLVIADYKTDRV-------TPEQVDAR 1058 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLR-GVDKEHP 1151 + Y Q +Y A+ + + V+++F R GV++ P Sbjct: 1059 LAV--YRNQAAVYAFAVAEVTGLPVKE---------VVFVFARAGVERAIP 1098 >UniRef50_B3WEJ1 ATP-dependent helicase/nuclease subunit A n=8 Tax=Lactobacillus RepID=ADDA_LACCB Length = 1234 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 214/1260 (16%), Positives = 415/1260 (32%), Gaps = 218/1260 (17%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ ASAG+GKT + ++ +L + +L+VTFT AATAE+R +I++ Sbjct: 19 VLVSASAGSGKTTVLVERIIQKILKQHA--------DITRMLIVTFTRAATAEMRTKIQT 70 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + + E + + + L ++ A + T+ F +++ Sbjct: 71 ALKKALTERRHELS---------------GEDRRHLANQIAMVNAAKISTLDAFSLQIVQ 115 Query: 139 LNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFE---TWKGPQAL 193 + + +L+ DE+ + + D R Y A + + Sbjct: 116 TYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLTANFSGDRDDSG 175 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW----------------- 236 L+D+ L +A P E LA+ +A +Q W Sbjct: 176 LQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIWPRVKGQLLQIATSLTQA 235 Query: 237 -------------RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP 283 + +L L + ++ + +AW+ + Sbjct: 236 SALANQLPNPIWYQQIQADLAPLQTLLETNAPTYDTVRSVLISHEFAAWS-RISKGLDDA 294 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL---AEIRETVA 340 + K + + L D K + P F + + + L ++ + + + Sbjct: 295 DKDTKNAAKDLRDAAKKTWQNKLAPTFALAAEQIGDLLREAQPLVATLANVALKFEDALT 354 Query: 341 REKRRRGELGFDDMLSRLDSALRSES---GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 EK R + D+ L+ + G +A R F M+DE+QD P Q + Sbjct: 355 AEKAARHVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDEVMVDEYQDISPLQEALL 414 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV---------HAHYTLDTNWR 448 + P ++GD KQ+IY FR AD ++ L N+R Sbjct: 415 AAVSTTTPGDR-FMVGDVKQSIYGFRLADPQLFIHKYQTFQDAPTDPAAPERIILAENFR 473 Query: 449 SAPGMVNSVNKLFSQTDD------------AFMFREIPFIPVKSAGKNQALRFVFKGETQ 496 S ++ N +FSQ D A + + + A K E Sbjct: 474 STKNVLAFTNLIFSQIMDPEVGDLSYDNAAALRYGALDYGDAHPAVKVLLYSKATSDEDS 533 Query: 497 PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 + + D + Q+ A+I+ + + + R + DI++ Sbjct: 534 SDASELPGDADDNEPVDIATGQTQLVLAEIQRLINDPDA-QLWDRQAQEYRRIHYRDITL 592 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L R + + ++ +P +++++ + F+T E ML LL+ + +++ L + L Sbjct: 593 LTRQTSQNSLIQTQFAAAGVP-LFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVL 651 Query: 617 ATSMMGLNALDIETLNNDEHA---WDVVVE-----------------------EFDGYRQ 650 + ++GL+A + + +D V + +R Sbjct: 652 RSPIVGLSADQLALIRLAAKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRD 711 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVR 709 + R+ ++ +L A+ + + T GG +R ++ + + + + A + Sbjct: 712 LARENDLVTLLWAIYQDTGFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIH 771 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQA 766 +++ +++ + +++ D V+++TIHKSKGLE+P+V+L N R Q Sbjct: 772 FIT--LMQKQDQDLAMPAQVDPDNDAVKLMTIHKSKGLEFPVVFLMQANKHFNMRDQTGT 829 Query: 767 FYHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 + +L + + + LAE++RLLYVALTR+ + Sbjct: 830 AILTKQGIGIKWLDPETRVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVG 889 Query: 818 APLVRRRGDKKGDTDVHQSAL----GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 873 A + + T +A R+L A I + Sbjct: 890 ATMSGNQLTSADKTVEKWAAAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAET 949 Query: 874 DNQPWQVN---------DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 924 +P V DV+ T +++ D+ + S ++ + Sbjct: 950 TIKPALVGDETEFTIEIDVNPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTG 1009 Query: 925 DVDAAGVASVVEEP-------------------TLTPHQF----PRG---ASPGTFLHSL 958 + + ++P LT F P G A+ GT H L Sbjct: 1010 FQSVSEIKRAFDDPDTIDLVNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLL 1069 Query: 959 FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTE-----WITAVLQAPLNETGVSLSQLS 1013 + +D +P+ +R + + + + + + L L Sbjct: 1070 LQLVDLAKPITMASLRALRDQLTTKQVIAVDVAKHIDLTALIRFFETDLG----RLLLAK 1125 Query: 1014 ARNKQVEMEF--YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR 1071 + E+ F LP + A D ++ G ID Sbjct: 1126 PQQVHREVPFSMLLPADQVFEALA--------DDPGEDV----------LIHGIIDGYVS 1167 Query: 1072 HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA---------LHRYL 1122 E L DYK++ A+ RY Q LY A LHRYL Sbjct: 1168 DEQGVTLFDYKTDHNPNT-----------AVLVDRYRGQLNLYAQALQDLQPKPVLHRYL 1216 >UniRef50_A7VXH9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXH9_9CLOT Length = 1179 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 241/1239 (19%), Positives = 430/1239 (34%), Gaps = 201/1239 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 G L+ A+AG+GKT + + L RP + LL+VTFT AA AE++ R Sbjct: 18 NGSLLVSAAAGSGKTAVLVQRVIERLTD------PERPCDADRLLIVTFTNAAAAEMKER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I EL A A L + ++ A + TIH FC Sbjct: 72 ISAAIGELLQA---------------------DPANAQLQRQQILLNRAHISTIHSFCNE 110 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ N ++ + + ++ + LLR +A + + G Sbjct: 111 LVRENFYKLDISPDFRISDSAEMTLLRQEAMDEVMEELYAKEDGSFQGLSDAFSFGRDD- 169 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW--------RDAVGELDA 245 R + ++ I++ P + L + A A + + QW + AV + A Sbjct: 170 -RRLMETVETLYDFIRSHPFPERWLDEKEAMYRADLPAGETQWGKIILDYAQSAVDYMAA 228 Query: 246 LIESS---GIDRRKFNRSNQAKWIDKIS------------AWAEEETNSYQLPESLEKFS 290 L ++S D K + + + +++ +S W + K Sbjct: 229 LTQNSLSVMEDDEKISAAYREAFLEDLSSLEELRDRIVSKDWNRIAAGVRAFGFAKLKAL 288 Query: 291 QRFLEDRTK---AGGETPRHPLFEAIDQLLAEPLSIRDLVITR----------ALAEIRE 337 + + +D K AG +F+ + L E I R A+ Sbjct: 289 RGYRDDPLKLRIAGSRDTVKSVFKKLASLFQEDEEKCRQDIRRLVPVVSELFGAVKRFSR 348 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTR-----FPVAMIDEFQDTDPQ 392 + +K+++ F D+ L ++ E R F M+DE+QDT+ Sbjct: 349 RLDEKKQQKRLADFGDLEHWALRLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDTNEA 408 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK----------ARSEVHAHYT 442 Q IFR I + L ++GD KQ+IY FR A +++ ++E A Sbjct: 409 QDMIFRAISREEK--NLFMVGDVKQSIYRFRQAMPEIFLRRKASYPDYDPEKNEYSAKVN 466 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 LD N+RS G+ + VN +F Q M + + E + + Sbjct: 467 LDRNFRSRHGVTDGVNFVFRQLMSVEMGE---MEYTGEEELTPGASYPEREEADTELHIL 523 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR-SR 561 + D + A+ + I ++ G+ L+ +G RP D VL+R + Sbjct: 524 TLP----KGADMDTLEAEYIGSLIASMVRNGE----LVQDGGKQRPAAYRDFCVLIRNAN 575 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 L + IP+ + + F T E L L+ + P ++ L S L + + Sbjct: 576 AHGGVYAAKLREMGIPA-WSDTAGTFFGTPEVSVALSYLRVLDNPVQDIPLLSVLISPIW 634 Query: 622 GLNALDIE-------------TLNNDEHAWDVV-------VEEFDGYRQIWRKRGVMPML 661 G D+ L + DV+ +E + +R++ ++ Sbjct: 635 GFTPDDLAQIRMARKGDAFYFALKDAAERPDVLGARCHRFLEHTEAFRRLAATLPADRLI 694 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDS 720 + L A A G+ RL ++ + + G+ + +R++ + L+ Sbjct: 695 QRLYEATGYPAVAQAMRQGDLRLNNLRLLMKYARDYEGSGYQGLSGFIRFIDR--LQEQD 752 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF--RVQEQAFYHDRHSFEAVL 778 + + L ++V++++IHKSKGLE+P+ L + +E H L Sbjct: 753 SDLAPAAALSESANVVRVMSIHKSKGLEFPICILANTARQFNKRREDILLHPALGLGMKL 812 Query: 779 -------DLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSL-------------- 815 + P E ER ++E+LR+LYVA+TR+ + Sbjct: 813 RDETMTVQYDTMPREAVSLEIERGGMSEELRVLYVAMTRAKEKLVMLTSLDDPVKTLGKL 872 Query: 816 --------GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT-CIEALCDDDIA 866 ++P V R D + AL G + A L + + I Sbjct: 873 GAQLTDSKAISPYVVRSAGSFSDWILSC-ALRHPSGGGLREKAGVLPGVMLTEGENWKIL 931 Query: 867 WQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDV 926 + + L L + S+ G + Sbjct: 932 LNPVREQQETVSGETEKRRQIQADPELTALLQKRF---SF---VYPGEALKSVPAKVAAS 985 Query: 927 DAAGVASVVEEPTLTPHQFPRG-----ASPGTFLHSLFEDLDF--TQPVDPNWVREKLEL 979 + AG + E ++ F G A GT LH + D+ + +R LE Sbjct: 986 ELAGKENAKEYAAMSRPAFLTGQTMTPAERGTALHLYMQFADYRLAKQDPEKQLRFLLEK 1045 Query: 980 GGF-ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDT 1038 G + Q E V + I Q+ L + N + E+ F + ++ + L Sbjct: 1046 GFLTQEQAEAVSLKKIERFFQSGLYRRMEQ-----SENLRREIRFTVELAASEVNPGL-- 1098 Query: 1039 LIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAM 1098 G P+ +L+G +D VF G L+DYK++++ Sbjct: 1099 ------TGQNGREPV-------VLQGAVDCVFEENGGLILVDYKTDYV-----------K 1134 Query: 1099 AAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFG 1136 +RY Q LY LAL + ++ + Y Y G Sbjct: 1135 EEQELKNRYCRQLSLYALALEQTTGLKVTEQYLYSFSLG 1173 >UniRef50_C6LH77 ATP-dependent nuclease subunit A n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH77_9FIRM Length = 1237 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 244/1248 (19%), Positives = 427/1248 (34%), Gaps = 205/1248 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + L +L P ++ LL+VTFT AA E++ RIR Sbjct: 21 LVSAAAGSGKTAVLVERILSMLTDK------EHPRDIDRLLIVTFTNAAAGEMKDRIRVA 74 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I + C + + ERLLE L + A + TIH FCQ ++ Sbjct: 75 IEQKIEDCRADGGEE---ERLLEH----------LQRQVSLLSNAQITTIHSFCQYVIRN 121 Query: 140 NAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETWK--GPQALLRD 196 + + + ++ E L D Y E + + E A L + Sbjct: 122 HFHTIDLDPGLHVADEGEQKLLQSDVMDKLVEEAYAENTEEFRYMAECLAPGRDDAALAE 181 Query: 197 INRYLQ----------------GEAPVIKAPPPDDETLASRHAQIVARI-DTVKQQWRDA 239 L +A + A D+ + Q+ +I + V+ Q +A Sbjct: 182 TALSLYHFSRSFPFPEEWLQECRDAYDLSAEEFDETAWVRQLQQLSTQILEEVRAQIEEA 241 Query: 240 VGE----------LDALIESSGIDRRKFNRSNQAKWIDKISA--WAEEETNSYQLPESLE 287 + DAL + + W + Sbjct: 242 LAIAESPDGPYPYCDALEADLQLADALLAEKTYTGRCAAMQQISWTRLSAKKDASVSEEK 301 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRETVAREKR 344 K + L + K E R + + + A + V IT ++ A EK Sbjct: 302 KQQVKNLRESYKKAVEDLRTEFYSSPAETAAAAMRDCAPVVAGITEFVSRFAARYAAEKV 361 Query: 345 RRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 ++ + FDD+ L + +A + +IDE+QD++ Q I Sbjct: 362 KKNMMDFDDLEHFALQILVTRRDGKLCPTPVAEEFAAHYEEILIDEYQDSNLVQELILTS 421 Query: 400 IWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--------HAHYTLDTNWRSA 450 I H L ++GD KQ+IY FR A + + L N+RS Sbjct: 422 ISKKHSGGHNLFMVGDVKQSIYRFRLARPELFTEKYDSYRTGEPQAAQRRIDLHRNFRSR 481 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP--AMKMWLMEGES 508 ++ VN LF Q M + + + A G+ ++ L++ E+ Sbjct: 482 SQVLTFVNFLFEQ----IMEKHLGNVEYDDAAALYPGAEFAPGDDDAFRDTEVLLIDAEA 537 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG--DDARPVRASDISVLVRSRQEAAQ 566 + A+ A AG G+ L+ + R DI +L+R+ Q A+ Sbjct: 538 EEEKEKPEESARELEAYAVAQRIAGIVGKELVWDNALGAYRRAEYRDIVILLRTIQGWAE 597 Query: 567 -VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 LT +IP+ + +R F T E Q +L LL+ + P ++ L + L + ++ L+A Sbjct: 598 PFAKVLTEQDIPA-HTGSRTGYFSTTEVQTVLSLLRVIDNPRQDIPLTAVLHSPIVWLSA 656 Query: 626 LDIETLNN------------DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 ++ + + E + +R++ + +L + A Sbjct: 657 GELAAIRSAHPQMPFYEACMQEPSLADFFAMLAEFRRMAAYTPIHELLWYIFERTGYAAY 716 Query: 674 LLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 A GG +R ++ + E + + VR++ +++ + D + Sbjct: 717 AAAMPGGSQRKANLDMLVEKAIAYEQGSYRGLYNFVRYI-ENLHKYDVDFGEAAS--GEQ 773 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA-----FYHDRHSFEAVLDLNAAPESV 787 ++ V+I++IHKSKGLE+P+V++ + Q A + D D S Sbjct: 774 ENAVRILSIHKSKGLEFPIVFVCGMGKQMNQSDARKSVVLHADLGIGCDRTDPKLRIRSA 833 Query: 788 DLAEA--------ERLAEDLRLLYVALTRSVWHCSL----------------------GV 817 L + E L E+LR+LYVALTR+ L V Sbjct: 834 TLLKRFMKRYTVQENLGEELRVLYVALTRAKEKLILTGTVTKLADKLQKWGQVCRREGTV 893 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 P R + S L ++ + L +I + + Sbjct: 894 LPFTLRAHASTYWDWLIPSLLRNRCFAPLAEEYGVYQDHSHPLFSREIFCRVTYLPVREL 953 Query: 878 WQVNDVSTAEL---NAKTLQRLPGDNWRVTSYSGLQQR--------------GHGIAQDL 920 +L K L P + + L + +L Sbjct: 954 TGAEKQRQKKLYMTREKLLSLSPEAVFDAKAAQQLAENLSFCYAYGGEEKIPAKVSVSEL 1013 Query: 921 MPRLDVDAAGVAS-VVEEPTLTP--HQF------PRGASPGTFLHSLFEDLDFTQPVDPN 971 D + EEP P +F GA+ GT H L E LDFT D + Sbjct: 1014 KKYAQFDELEDGELLFEEPAPVPLIPEFLQEKSEVSGAARGTIYHKLMECLDFTLFADTS 1073 Query: 972 WVRE-------------KLELGGF--ESQWEPVLTEWITAVLQAPLNETGVSLSQLS-AR 1015 ++ +L+ G + E + + + A L+ PL + ++Q + Sbjct: 1074 VQKDTAEMRRFLEAETGRLQRAGHLKAEEAELISEKKLLAFLKHPLAQ---RMAQAAVRG 1130 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 E +F L + A + + P+ +++G ID F +G+ Sbjct: 1131 QLFREQQFVL----SVPAGDIRREWQAGGPV--------------LIQGIIDAYFIEDGQ 1172 Query: 1076 YYLLDYKSNWL--GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 L+DYK++++ E SS Y +Y +Q Y +AL R Sbjct: 1173 IVLVDYKTDFVKFEEASSLYR-----------KYAVQLDYYEIALTRL 1209 >UniRef50_Q04GY7 ATP-dependent helicase/nuclease subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=ADDA_OENOB Length = 1186 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 206/1223 (16%), Positives = 417/1223 (34%), Gaps = 197/1223 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ ASAG+GKT + + LL +++ L+ TFT+AA E++ R Sbjct: 16 DHNLLVAASAGSGKTTVLIEHVYQQLLSGK---------SIDRFLISTFTDAAALEMKNR 66 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 + I +++ Q + L ++ AA+ T+ F R Sbjct: 67 LEKRIRA-------------------GITEEEGQLKRHLQEQLLLLNSAAIGTLDSFSLR 107 Query: 136 MLNLNAFESGMLFEQQLIEDESL---LRYQACADFWRRHCYPL--------------PRE 178 ++ G+ +++ D++ L D + + ++ Sbjct: 108 IIERYYSVIGLDPRYRMLADQTEKNLLVKDVLDDTFDEMYHDEKFLRLLNNFSSASHDQD 167 Query: 179 IAQVVF------ETWKGPQALLRDINR-------YLQGEAPVIKAPPPDDETLASRHAQI 225 + +V ET P L I +G P ++ Q+ Sbjct: 168 LKNLVIKLNTMAETRANPDFWLDSIAENYRLSGGLTKGSFWKELLQPQIFNRASAALYQL 227 Query: 226 VARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAW--------AEEET 277 ++ V+ D + L ++ G+ R +Q W + A + Sbjct: 228 LSAKKGVED-LEDYHSYIAYLADAVGLVRGFIEVCSQNNWQQMSDYFVNNSWPKSARKSG 286 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEI 335 + Q + + + + ++++ + LF Q L +V + R Sbjct: 287 KNEQEADYFDNWIKPWIKEAKDSYRSIESDFLFLNESQWLDISEKSLGVVEELIRLTKVF 346 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 R+ A +KR L F D L++++ + I++ F ++DE+QD + Q Sbjct: 347 RKKFALKKRELSLLDFSDGEQFAYQILQNQT---VREEIQSLFDEVLVDEYQDINDLQEN 403 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLDTNWRSA 450 I + + + ++GD KQ+IY FR AD + + L N+RS Sbjct: 404 ILTDVSN---GSNFFMVGDLKQSIYGFRQADPVNFSNKYIQYKEGNGGELIELSENYRSQ 460 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG--ETQPAMKMWLMEGES 508 + + N +F + D R++ I + + +A + + + ++ ++ ES Sbjct: 461 HNVADFTNAVFRKLMD----RKLGGIDYRGDVELKAANRDYPKNLKNVADISIFDIDEES 516 Query: 509 CGVGDYQSTMAQV--CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 D+ S AQ+ AA+I+ + + E RP+ DI++L RS Sbjct: 517 NEDEDFNSRQAQIEIIAAKIQALVG---QSEIYDRQSGKMRPLVYRDITILERSHSWEND 573 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 ++ IP + + + E +L L+ + P ++ L + L + + GL+ Sbjct: 574 IQTIFKKYHIPINVAAG--NFLQEFEVSIVLSFLKIIDNPHQDIPLVAVLRSPIYGLDEN 631 Query: 627 DIETLNNDEHAWD----------------------VVVEEFDGYRQIWRKRGVMPMLRAL 664 + + + D + + + YR+I ++ ++ + Sbjct: 632 QLAEIRTADMKHDYFSALQAYAKTGQDLDLQKKMAAFLVQLENYREIAADNQIVDLIWQI 691 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEHALVRWLSQHILEPDSNAS 723 + N E + GG +R ++ + + Q+ + +R++ Q + DS Sbjct: 692 YNDTNWPEYVAGMVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQLM---DSVED 748 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF---RVQEQAFYHDRHSFEAVLDL 780 Q ++ + V ++TIH +KGLE+P+V+L + R A D + + + Sbjct: 749 FAQAPVDMGQEAVSVMTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVDFDNGIGIDFV 808 Query: 781 NAAPE----------SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 + + + + + AE++RLLYVALTR+ L + Sbjct: 809 HPTSQVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLVGSSKRMSDLIHNWG 868 Query: 831 TDV-----------------HQSALGRLLQK----GEPQDAAGLRTCIEALCDDDIAWQT 869 T V +QS +G L + + QT Sbjct: 869 TPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLTFKIESYNAQT 928 Query: 870 AQTGDNQPWQVNDVSTAELNAKTLQRL----PGDNWRVTSY-------SGLQQRGHGIAQ 918 ++ E + +++ S S L++ Sbjct: 929 IPKIVENKAKIKQNEQEETGIDLARSKKILDYNYPYKIESELAAYHNVSELKRVFEDPDS 988 Query: 919 DLMPRLDVDAAGVASVVEEPTL---TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE 975 LMP ++ D + + EP + GT H + E +D+ + +D +++++ Sbjct: 989 LLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHLILEKIDWKKEIDKDYLQQ 1048 Query: 976 KLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 ++ + + + L EF I + + Sbjct: 1049 LIKENIPDQKTRQSIE--------------------LDRIIWFANSEFGTEIKKSASTLK 1088 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 + P +E ++ G ID F +G L DYK++ G+ Y Sbjct: 1089 REQTFAMLIPAKQIYQQVETSDPV-LVHGIIDGYFISDGLITLFDYKTDRFGK---DYVS 1144 Query: 1096 QAMAAAMQAHRYDLQYQLYTLAL 1118 + RY Q LY AL Sbjct: 1145 K------LKERYSGQLNLYAAAL 1161 >UniRef50_C9LTM8 ATP-dependent nuclease subunit A n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTM8_9FIRM Length = 1251 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 243/1291 (18%), Positives = 440/1291 (34%), Gaps = 254/1291 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R +L V+ LLVVTFT AA AE+R RI Sbjct: 21 NLLVAAAAGSGKTSVLVERIIRRILQGET--------DVDRLLVVTFTNAAAAEMRERI- 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 E L + K A+ L + A++ T+H FCQ ++ Sbjct: 72 --------------------EAALAQEIAKGTASPKLERQLALLSNASISTLHAFCQNVI 111 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETW--KGPQAL 193 N + + +L ++ LL+ A + + + + G +AL Sbjct: 112 RRNFSVIDLDPKFRLANEQERRLLQQNALEEVFEKKYDEAQEDFLSFAAAYGTEHGDEAL 171 Query: 194 LRDI-------------NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + +R+L A ++A+I A+ Sbjct: 172 YAMVLRLYAFSCSQPFPSRWLDSLAESFDLAEQQRLLDTPWAQSVLAQISFELAAGLAAI 231 Query: 241 GEL-------------DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 L AL I + + W A++ P+ ++ Sbjct: 232 ERLVEKAAALGYETCHAALEGDEKILKDLLDALAARDWEGLRQAFSSYAHARMSFPKGMD 291 Query: 288 KFSQRFLE-------DRTKAGGETPRHPLFEAIDQLLAE---PLSIRDLVITRALAEIRE 337 + + + DR K + R F A ++ L + LS I + + Sbjct: 292 EEEKEEAKRLFTQPRDRVKQRLKKLRETYFHATEEELLDDLRALSGMAHAIVDVVKDFTA 351 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQDTD 390 + K+ RG + F+D+ + L + A A+R ++ M+DE+QDT+ Sbjct: 352 SFQAAKKERGVVDFNDLEHFALAVLCDKDASEGELRPSAQALALREKYEEVMVDEYQDTN 411 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLD 444 Q I + L +GD KQ+IY FR AD ++K + E A L Sbjct: 412 GVQEAILSLVARDD---NLFAVGDVKQSIYRFRLADPQLFLKKQREYPTLGEKYARIDLS 468 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS G++ +VN +FSQ E+ + + A+++ ++ Sbjct: 469 ENYRSRAGVLAAVNWIFSQLMTP-EAMELTYDDAAALHFAALYPEDSPKSLAGAVELHII 527 Query: 505 EGESCGVGDYQ-------------------------------STMAQVCAAQIRDWLQAG 533 E ++ + + + A A ++R+ +++G Sbjct: 528 ESDAESSVEPEEEDEEKAETSAVADGGAETPEGEEEEELKGFALEAAFIARRVRELMESG 587 Query: 534 QRGEALLMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 AL+ + D RP+R DI +L+R+ R +A + + L +IP+ Y + F+ E Sbjct: 588 ----ALVADKDGYRPLRWRDIVILLRAVRTKADILLETLRDADIPA-YATLDAGYFQATE 642 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-------------------- 632 + +L +L + ++ L +AL + ++GL+ ++ L Sbjct: 643 VRVVLAVLAVIDNARQDVPLAAALCSPIVGLSVSELAELRLAALEEDIFGALLVVNDPAA 702 Query: 633 ----NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 + D + G+R + R+ V ++ + + + AGG R ++ Sbjct: 703 KFSASLREKVDAFLRLLKGWRDLVRRVSVPELIWQIYRDTGYYDYVGGMAGGLLRQANLR 762 Query: 689 HISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 +++ T +R++ + S L + +V+I+TIHKSKGL Sbjct: 763 MLADRARDYEETNFRGLFRFLRFIEKMQQM--ETDLSAARTLGEGEDVVRIMTIHKSKGL 820 Query: 748 EYPLVWLPFITNFRVQEQA-------------FYHDRHSFEAVLDLNAAPESVDLAEAER 794 E+P+V + + + + A Y A + + E Sbjct: 821 EFPVVIVAGLGSKFNMQDASQDLLMHRELGLGLYRTEREKSLRYSTFAREAVAERIKRES 880 Query: 795 LAEDLRLLYVALTRSVWHCSL------------GVAPLVRR--RGDKKGDTDVHQSALGR 840 AE+LR+LYVA+TR+ L G V + R S L Sbjct: 881 KAEELRVLYVAMTRAREKLILVGSTKKLAACAEGWCSFVTQTERALPAHAALAANSFLDW 940 Query: 841 L-LQKGEPQDAAGLRTCIEALC-------DDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 L + D A LR L +DD WQ + V+ + Sbjct: 941 LGMTVARHADGAPLREKAALLEKRVAPEGEDDSRWQVEIVPASAVASVSAAVAEDNELFE 1000 Query: 893 LQRLPGD--------------NWRVT-----------SYSGLQQR---GHGIAQDLMPRL 924 R W+ S + L++R + L Sbjct: 1001 KLRRGEPLEASEEKDDVEQMLAWQYAPHGVDNVPAKLSVTELKRRFSVEDAAEEKAYIPL 1060 Query: 925 DVDAAGVASVVEEPTLTPH-QFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE----- 978 +V + P A GT +H++ + +D + ++L Sbjct: 1061 KEVHGSSKNVFKRPDFMQEKAGLSAAEYGTLMHAVLQHIDLAGDTGREGLEKQLANMVEK 1120 Query: 979 LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDT 1038 Q + V + + + LQ+PL AR E+ F Sbjct: 1121 ELLLPEQAKAVRLDAVASFLQSPLGTRMK-----KARRLWHELPF-------------SR 1162 Query: 1039 LIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQA 1097 + P + R ++G ID++F E G LLDYK++ + Sbjct: 1163 RLEAHSFYPEAEP-----EARIFVQGVIDVLFEDEAGALVLLDYKTD-----------KN 1206 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 A +Y LQ ++YT A+ L ++A+ Sbjct: 1207 TRPAAVREKYRLQIEIYTEAVEAILGRKVAE 1237 >UniRef50_A6TVN2 ATP-dependent helicase/nuclease subunit A n=2 Tax=Alkaliphilus RepID=ADDA_ALKMQ Length = 1197 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 220/1263 (17%), Positives = 446/1263 (35%), Gaps = 229/1263 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 LI A+AG+GKT + ++++L + ++ LL+VTFT AA E+R RI Sbjct: 18 NLLISAAAGSGKTAVLVERIIQIILKD--------KIDIDRLLIVTFTNAAAGEMRERIA 69 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I +EE++ K + L ++ A++ TIH FC ++ Sbjct: 70 GAI--------------------MEEMERKTEQEAHLRRQINLLNRASITTIHSFCIDVV 109 Query: 138 NLNAFESGMLFEQQL--IEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 + + ++ I + S++R +A + + ++V + R Sbjct: 110 RRHFHIIDVDPGFRIGDITETSIMRLEALEELFEEEYQGAHETFFRLVEAFGGTKED--R 167 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQIVARID---------TVKQQWR-DAVGELDA 245 + + I++ P + L + I+ T+K + G +D Sbjct: 168 PLQDLVLKVYGFIQSQPYPEVWLKEKVGDFSLSIEDFDESLWIKTIKSRIEIQLKGAMDL 227 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES-------------------- 285 L + I + + I E +S LP + Sbjct: 228 LNNALSIAQEPGGPEVYEEAILSDLGQISELYDSLTLPITSFYEHLNHINHARLKPSKES 287 Query: 286 ---LEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL--VITRALAEIRETVA 340 L++ S+ + + + + + + + + L + + + A Sbjct: 288 DPVLKEESKNLRDKAKGIIKDIKDNIFTVSPEAYVEDLNKLHPLMDYLYQLVTGFTSRYA 347 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 ++K RG + F+D+ L + E++A + RF +DE+QD++ Q + + I Sbjct: 348 QKKADRGIVDFNDLEHYGLEIL---ANELVAQEYQQRFEYIFVDEYQDSNIVQETLIQSI 404 Query: 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS-------EVHAHYTLDTNWRSAPGM 453 + + L ++GD KQ+IY FR AD +++ +++ L N+RS + Sbjct: 405 ---KRKDNLFMVGDVKQSIYRFRLADPSLFIEKYETFGEKEGDINRRIDLAKNFRSRGEV 461 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 + VN LF + EI + + + + F+ +P++++ L+E D Sbjct: 462 LAGVNYLFKYIMSKELG-EIGYDHRAALYQGAS----FESIKEPSIEVNLIEKNMEIDED 516 Query: 514 YQ---------STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + A++ A +I+D L E + R + DI VL+R+ + Sbjct: 517 IEEELQELADIEVEARIIAKRIKDLLNE----EIYDEKNEVYRRLEFKDIVVLLRTTKNW 572 Query: 565 AQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 AQ +A IP+ Y FE +E L LL+ + ++ L S + + + Sbjct: 573 AQSFLEAFIREGIPA-YADANTGYFEAIEVGMFLNLLKVIDNKRQDIPLISVMRSPIGEF 631 Query: 624 NALDIETLN---NDEHAWDVV------------------VEEFDGYRQIWRKRGVMPMLR 662 ++ + + +D + +E+ + + R + + Sbjct: 632 TTAELIDIRINDKNGTYYDAIEKYIEKNEDALKDKLVSFIEKLNKWGNEARYIKIDQFIW 691 Query: 663 ALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSN 721 L+ + A GG +R ++ + + Q T ++ ++++ + L+ Sbjct: 692 KLLMDTGFYYYVGAMPGGLQRQANLRILFDRASQFEKTSIKGLFNFIKFIEK--LQGSKG 749 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAV 777 L + ++V+I++IHKSKGLE+P+V + H Sbjct: 750 DMGAAKILGENDNVVRIMSIHKSKGLEFPVVIAAGMGKNFNLRDTSADVLLHKDLGLGPK 809 Query: 778 L---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR---- 824 D A D + E L+E++R+LYVA TR + + R Sbjct: 810 FVDSNLRTYRDSIAKLAMKDQIKIESLSEEMRILYVAFTRPKDKLIIVGSLRKIDRLVTN 869 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDV- 883 ++ + +A L G + L D + + ++ W VN + Sbjct: 870 WNQADNIYSLMNAKSYLDWIGAALIKHPHGEVLRELGDFEFN-ELKYKAEDSKWTVNILG 928 Query: 884 STAELNAKTLQRLPGDNWR-------VTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE 936 A + + +RL + ++ +S R +++ RL+ + V Sbjct: 929 RQAVVLEEHEKRLKEEEYKEKLTHFNREDFS--PHRHTEHKEEIDNRLNWQYPYPQATVI 986 Query: 937 EPTLTPHQFPR------------------------------GASPGTFLHSLFEDLDFTQ 966 L+ + A GT +H + + L Q Sbjct: 987 PSKLSVSDIKKANMGEMDSIVHQIPTLVKTPKFMEGKKALTAAERGTIIHFVLQHLALNQ 1046 Query: 967 PVDPNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 + ++++L E + + V I ++ + + L A E Sbjct: 1047 VGSEEEISQQIDLMVARELITEEEAQVVNVGKIVNYFKSEIGKRM-----LGAEKVYRES 1101 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 F + S + L E ++ + +++G ID F L+DY Sbjct: 1102 PFIIEKSAKDVIHGLS----------------ENLEEKLLVQGVIDCYFEEMDGLVLVDY 1145 Query: 1082 KSNWL--GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 K++ + G+ +S T RYD+Q +Y AL R ++ + + Sbjct: 1146 KNDIVLNGDTASIMT-----------RYDVQLMMYAEALERITGKQVKE--------TYL 1186 Query: 1140 YLF 1142 YLF Sbjct: 1187 YLF 1189 >UniRef50_C4Z991 DNA helicase II n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z991_EUBR3 Length = 1220 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 215/1238 (17%), Positives = 415/1238 (33%), Gaps = 206/1238 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + + + P+ ++ +LVVTFT+AA AE+R R+ Sbjct: 21 LVSAAAGSGKTAVLVERIVNRI------CVDNPPVDIDRMLVVTFTKAAAAEMRERVSCA 74 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I + + ++ + L + A + TI FC ++ Sbjct: 75 I---------------------DSLKEQKPDDENLQRQSTLVHNALITTIDSFCLFVVQN 113 Query: 140 NAFESGMLFEQQLIEDES------LLRYQACADFWRRHCYPLP----------------R 177 N + + + ++ + Q D + R R Sbjct: 114 NFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEAFINLIDTYSKGRNDSAVR 173 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 ++ + ++ + +NR L+ D E + ++ Q+ Sbjct: 174 QMVEDIYYKAGSSSWPRKWMNRLLRLYDIKSAKQLEDSEIIKEIVDYSRVLLEEAVQELT 233 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISA---------------WAEEETNSYQL 282 A A + G+++ S D ++ + Sbjct: 234 MAKDLASA---TPGLEKYALTLSEDIALFDGMADVTGYVGMQEFLNKISFGRIAAIRKFD 290 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRETV 339 + +K + + D K + + F +L+ E L + + R E + + Sbjct: 291 GDEKKKERVKSMRDAAKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSLEFYDAM 350 Query: 340 AREKRRRGELGFDDMLSRLDSALRSES---GEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 K ++ F D+ L E A F MIDE+QD++ Q I Sbjct: 351 EAVKIKKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSNQVQEDI 410 Query: 397 FRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKAR------SEVHAHYTLDTNWRS 449 I + ++GD KQ+IY FR A +M+ H L N+RS Sbjct: 411 LTAISREHQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSDDSAHQRIDLHKNFRS 470 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 +++ N +F + A ++ + K +P + + + E Sbjct: 471 RNEVLDFTNDIFYKIMAA----DLGNVQYDDDAALYPGASYPKETMRPELLLVDYKDEDL 526 Query: 510 GV------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 GD A + A +IR ++ G R V+ DI +L RS Sbjct: 527 SEIIEDEDGDKVQIEALLIANRIRSLMEN---GMVTDKKTGQLRAVQYRDIVILSRSVAT 583 Query: 564 AAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 V L +IP+ ++ + F + E Q +L +L+ + P ++ + + LA+ ++G Sbjct: 584 WGNTVAAVLKDCDIPA-HVESNTGYFSSYEIQVILSMLRILDNPLQDIPMAAVLASPIVG 642 Query: 623 LNALDIETLNN---------------------DEHAWDVVVEEFDGYRQIWRKRGVMPML 661 ++ ++ + + ++ F+ R + +L Sbjct: 643 MDDEELAQIRSAFKGVSFAQAALSAMAGEDGYEDEKLKAFALVFERLRGAVADTPIHELL 702 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDS 720 ++ A G+RR +I + E T + VR++ I + Sbjct: 703 YMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEKTSYKGLFHFVRYID--IQQKYE 760 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEA 776 + + +V+I+TIHKSKGLE+P+V++ + + H++ Sbjct: 761 IDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKSFNTQDTKSDLVIHEKLGLGL 820 Query: 777 VLDLNA---------APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 V + E + E L E+LR+LYVALTR+ L ++ + Sbjct: 821 VEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALTRAKEKIILTGGLSNAQKSFE 880 Query: 828 KGDTDVHQS---ALGRLLQKGEPQDA--AGLRTCIEALCDDDIAWQTAQTGDNQPWQVND 882 K +V+ + + G+ G D + + + + ND Sbjct: 881 KYRGNVNANQPISFGQREGAGCYLDWIIPAMLSYPDKYTVSTVDATEFAARTAMDMAAND 940 Query: 883 VSTAEL----------NAKTLQRLPGDNWRVTS-------YSGLQQRGHGIAQDLMPRLD 925 +S A+L AK L + S YS + + H + + Sbjct: 941 ISKAQLIGHISAADETKAKELAEEFDFEYVYASDITKKSKYS-VSELKHDSMVEKYDSTE 999 Query: 926 VDAAGVASVVEEPTLTPHQFPR----------------------GASPGTFLHSLFEDLD 963 +A ++EE F R GA GT +H + E LD Sbjct: 1000 REAERPKFLLEEKETYVPDFARDDEAGGASNESKEPKNAAGVNQGALRGTAVHRVMECLD 1059 Query: 964 FTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 F D + + + +L + + + + L+ R K +E +F Sbjct: 1060 FKSLCDIDTKDHVAVSAFVKKSMDEMLEKRL-------ITDDMYRLT----RPKLIE-QF 1107 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 +A+++ ++ D +++ V +++G ID+ + + LLDYK+ Sbjct: 1108 I----SSDVAARMAQADKRGDLYKEKPFVMDYEGV--LVQGIIDVFWLENDKIVLLDYKT 1161 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 + + RY Q +LY AL R Sbjct: 1162 DRVNAAKE-----------LIDRYSTQLKLYADALGRI 1188 >UniRef50_C9LAG5 ATP-dependent nuclease subunit A n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAG5_RUMHA Length = 1223 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 225/1265 (17%), Positives = 429/1265 (33%), Gaps = 209/1265 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + ++ + P+ ++ELL+VTFT AA E++ R Sbjct: 17 NCNILVSAAAGSGKTAVLVERIIQRITDKNN------PVDIDELLIVTFTRAAAGEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR I + A NP E L + + A + TI FC Sbjct: 71 IRQAIEKKLEA-------NPEDEHLQRQST--------------LVHHALITTIDSFCSY 109 Query: 136 MLNLNAFESGMLFEQQLIEDESLLRYQA-CADFWRRHCYPLPREIAQVVFETWKG----- 189 ++ + ++ ++ + QA AD Y + + G Sbjct: 110 IVKNYFHLIDLDPSFRMGDEGEMRLLQADVADAVLEEAYTEEAPSFLAFSDGFAGGKTDK 169 Query: 190 --PQALLRDINRYLQGEAP----VIKAPPPDDETLASRHAQIVARI--DTVKQQWRDAVG 241 P+ +++ + + P + + +TL ++ + VKQ+ ++A Sbjct: 170 KIPEMIIKLYSFSMSYPYPEEWLLNCRKAYEVKTLEELENAEWMKLIKNEVKQEIKEASM 229 Query: 242 ELDALIE-SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 L +E S D F + ++ E N ++ E L+K + L KA Sbjct: 230 LLKQALEISKEPDGPVFYIGLLEDEVSELEK-LERTENFFEWKEMLDKLEFKRLPAGKKA 288 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE-------------------------I 335 E E L E + R E Sbjct: 289 EKELVSESRQELAKNLRNEAKEQIKALKERYFQETAEEMLENLQRAGEPVGVLVDLTLAF 348 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGE-----VLAAAIRTRFPVAMIDEFQDTD 390 + +K+ + L F D+ L + E A + +F MIDE+QD++ Sbjct: 349 MKLYREKKKEKNILDFGDLEHYALEILIHHTKEKDERTDAARELSKKFAEIMIDEYQDSN 408 Query: 391 PQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYT 442 Q ++ + + ++GD KQ+IY FR A +M+ Sbjct: 409 LVQEKLLTSVSKIEDGIYNIFMVGDVKQSIYRFRLARPDLFMEKFKTYPQEAGENCLRID 468 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L N+RS ++ VN LF Q M ++ + S R + + + Sbjct: 469 LHKNFRSRAEVLEGVNYLFYQ----IMGEDLGGVEYDSTAALYPGRTFPPKQEEESEPAT 524 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 + + + A++ A +I + + L ++ RP + SD ++L+R+ Sbjct: 525 EVLLLEDEEENTRELEARMVALRIGEL---AGKYLVLDKKTEEYRPAKYSDFTILLRTMS 581 Query: 563 EAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 A+ + L IP+ ++ + F E +L L+ + P ++ L +AL Sbjct: 582 GWAETFKKILNSCGIPA-SVTTKTGYFSAQEVTTVLDYLKILDNPMQDIPLAAALHGLPD 640 Query: 622 GLNALDIETL------NNDEHAWDVVV--------------EEFDGYRQIWRKRGVMPM- 660 G + ++ + N ++ ++ F YR + RK PM Sbjct: 641 GFSFQELAEIKVLGMENEKNGFYEALLLGEKLSSPLGEKIRRFFAVYRDLRRKVPYTPMH 700 Query: 661 --LRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILE 717 + A + + GE+R ++L ++E T +R++ L+ Sbjct: 701 ELIWDFYDATDFLVYQQSFVSGEQRKANLLMLAEKARDYESTSYRGLFNFIRYIEN--LK 758 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHS 773 + L ++ V+I++IH SKGLE+P+V++ + +E H Sbjct: 759 KYQVDFGEANTLSENEDTVRIMSIHGSKGLEFPIVFVCGMGKQINMQDARESIVLHPDLG 818 Query: 774 -FEAVLDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLG-------- 816 +D + + + E L E+LR+LYVALTR+ L Sbjct: 819 IGSPYVDTQLRIRTRTILQKAVQREILLESLGEELRILYVALTRAKEKLILTGVTSKLED 878 Query: 817 --------------VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 P R K V + K + + + D Sbjct: 879 TLKSFEMLKKQEEERLPYGLRVKGKSYLDWVLAALARHRAMKPLYEMYDFSVYSLNEMYD 938 Query: 863 DDIAWQTAQ-------TGDNQPWQVNDVSTAELNAKTLQRLPGDNWR---VTSYS----- 907 + + Q + Q + EL + + WR S+S Sbjct: 939 REPDFTVRQVQPLELVLDEAQLRTEEMLKKGELLLWDSSEVYDEKWRKLFRDSFSYEYPY 998 Query: 908 ----GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF-------PRGASPGTFLH 956 + + M D + + + EE F +GA+ GT H Sbjct: 999 QAEGAIPAKLTVSEIKRMQSADTEESEILLEKEETEEIVPLFMQETKEELKGAAKGTLYH 1058 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARN 1016 ++E+LD+ + + E+LE + + + WI+ + N V + + R Sbjct: 1059 RVWENLDYEKIDTKEQIEEQLENMLTTEEKKSI---WISDFYRFAKNPLAVRMKAAAQRG 1115 Query: 1017 KQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 + E F + + + + ++++ + +++G ID F E Sbjct: 1116 QLYREQPFVIAMP-------ANQMKKEYE-----------TEEEILVQGIIDAYFEEEDG 1157 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHH 1134 L+DYK++ + Q+ + +Y +Q + Y AL + + Y Y Sbjct: 1158 LVLVDYKTDKV--------QKGQEKELIE-KYKVQMRYYKKALEMITDREVKEIYIYSTG 1208 Query: 1135 FGGVI 1139 G + Sbjct: 1209 IGKAV 1213 >UniRef50_C0WLM5 ATP-dependent deoxyribonuclease, subunit A n=3 Tax=Lactobacillus RepID=C0WLM5_LACBU Length = 1254 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 226/1278 (17%), Positives = 447/1278 (34%), Gaps = 212/1278 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 G L+ ASAG+GKT + + ++ G + +++LLVVTFT AA E+R R Sbjct: 16 DGNVLVSASAGSGKTRVLVDRIIDMVKNQG--------INIDQLLVVTFTNAAAKEMRER 67 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 +R ++ + + TD + LL +I A A + T+ +CQ+ Sbjct: 68 LRGSLQ----SEFSKATDPESKKHLLTQIRKVAV--------------ADITTMDAYCQK 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIA------------- 180 +++ + G+ +++ D + L + D R Y + Sbjct: 110 LVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDEDHTFADLTENFSNDRS 169 Query: 181 -----------QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI 229 + P L D + + + ++ + V R+ Sbjct: 170 DEGLTNVIFQMDEFANVNEDPDKWLNDAASFYEISDQGLIHSELYTALISREVSDAVKRL 229 Query: 230 DTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAW-----------AEEETN 278 Q + + + + ++ + + K + + + W E T Sbjct: 230 VISHQAIIKMAQKAELEKDEALFTKQLESVTQLQKGVIEAADWDGLRQLITGFDFESMTK 289 Query: 279 SYQLPESLEKFSQ-----RFLEDRTKAGGETPRHPLFEAIDQL---LAEPLSIRDLVITR 330 + ++ E Q + D+ K + F +Q L R + Sbjct: 290 AKLTKDADEHQKQVHKLVKGTNDQMKKQWQKLVTGYFAWNEQDNVDLMNAAKARIEKLVT 349 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRS--ESGEVLAAAIRTRFPVAMIDEFQD 388 + R + K RR + F D+ L E + + ++ ++ M DE+QD Sbjct: 350 VVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQAKQVRQRLQDQYYEIMTDEYQD 409 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YT 442 + Q I +I ++GD KQ+IY FR AD ++K +++ + Sbjct: 410 NNRLQDAILNKIARSDRGNR-FMVGDVKQSIYRFRLADPTMFIKKQAQYIEQDNDNELIS 468 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFR---------EIPFIPVKSAGKNQALRFVFKG 493 L N+RSA + + N +F QT D + + K +++ Sbjct: 469 LSENFRSAKNIDDFTNLVFEQTMDHRVGDIAYTGKSKLQFGATYYPDDMKADVSLIIYRT 528 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 ++ A G + D S A++ A +IR + Q ++ RPV D Sbjct: 529 KSSAAATSNEDLGAGDQIEDSDSGQAEIIAQKIRTLVDDKQ--LIYDKKLEEMRPVTFDD 586 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I+++ + + D T IP+ ++ S F+T E Q M+ LL + P ++ L Sbjct: 587 IAIISPTHNNELTLSDIFTQYGIPA-EITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALV 645 Query: 614 SALATSMMGLNALDIETLNNDEH-----------------------------AWDVVVEE 644 + L + ++GL+ + L + + D +++ Sbjct: 646 AVLHSPIVGLDENQLAFLRINRNTGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQ 705 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLES 703 ++ + ++ G++ ++ + + + G +R T++ + + + Sbjct: 706 LRRFKDVAQQDGLVSLIWDIYDQTGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKG 765 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NF 760 V+++ Q + E D++ ++ + ++ V ++TIH SKGL++P+V+L + N Sbjct: 766 LFQFVKFI-QRMQERDNDLANA--NPTTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNM 822 Query: 761 RVQEQAFYHDRHSFEAVLDLNAAPES----------VDLAEAERLAEDLRLLYVALTRSV 810 + + + H + LN +D+ + L+E++R LYVA+TR+ Sbjct: 823 QDTIGKYVLNDHWGIGIDYLNNQTREFRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAE 882 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 870 L + + +G+K GD L E A +R ++ + Sbjct: 883 QRLYL----VAKVKGEKSGDNQQLIQGWQGLTDANELVLPAAVRNAAKSYLGWIGPAISR 938 Query: 871 QTGDNQPWQVNDVSTAELNAKTLQRL-PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAA 929 + + S TL L D+ R+T SG Q+ D + +L Sbjct: 939 HPNVLDRFGDSIHSNVLAGDPTLFNLDFYDDERITKESGRQKANQTSPNDFIDQLAQKKL 998 Query: 930 GVASVVEEPTLTPHQFP---------------------------------------RGAS 950 VA + F + A Sbjct: 999 TVAQPTKAAISQVMTFKYPHTAATKTTAYQSVSEIKRLFDDPDNTQLSGYSTLDVNKLAK 1058 Query: 951 PGTFLHSLFEDLDF-----TQPVDPNW-VREKLELGGFESQWEPVLTEWITAVLQAPLNE 1004 G +L + FE F +P L L + P + I A++ L + Sbjct: 1059 TGRYLKTDFEVPQFISEGGGKPAPTEIGTATHLVLQQIDLTTVPTIER-IEALIANLLKQ 1117 Query: 1005 TGVS---LSQLSARN----KQVEMEFYLPIS--EPLIASQLDTLIRQFDPLSAGCP-PLE 1054 +S SQ++ Q E+ Y+ + + L++ D + Sbjct: 1118 QVISPEVASQINVDEVLRFYQSEVGKYVLANPENTHREAPFSLLMKARDVFKDFQDNDEQ 1177 Query: 1055 FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 + + G++ G++ YL DYK++ + T + + + RY Q +LY Sbjct: 1178 TILIHGIIDGYV----ATNEAVYLFDYKTDHI-------TPKTTISDIVD-RYRGQLELY 1225 Query: 1115 TLALHRYLRHRIAD-YDY 1131 LAL + L I Y Y Sbjct: 1226 GLALSKILGRPITHKYLY 1243 >UniRef50_UPI00019738F0 recombination helicase AddA n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019738F0 Length = 1273 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 223/1307 (17%), Positives = 437/1307 (33%), Gaps = 250/1307 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R++ RP +E LLV+TFT+AA +E+R RI Sbjct: 19 NLLVSAAAGSGKTAVLVERIIRMITD------GERPGDIERLLVMTFTKAAASEMRERIH 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I ++ ++P E L ++ + A + TI FC +L Sbjct: 73 DAIE-------KKLKEDPGNEHLQQQ--------------AIMVQYAQITTIDSFCLHIL 111 Query: 138 NLNAFESGMLFEQQLIEDESLLRY------QACADFWRRH------------CYPLPREI 179 + + ++ ++ +L + D++ RH I Sbjct: 112 REHFDCLDIDPAFRVGDEGEMLLLRGDVMEELLEDWYGRHDPAFENFVETYASGKADGGI 171 Query: 180 AQVVFETWKGPQA--LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 +++ + Q+ ++ + E D + V R + Sbjct: 172 DDYIYQVYSFSQSNPWPKEWIDECRRELSDTSVEALDRTGWMQFLLEDVRRQASEWAGQL 231 Query: 238 DAVGELDALIESSGIDRR-KFNRSNQAKWIDKISAW--AEEETNSYQLPESL-------- 286 L + + G + + A+ + ++S + + + ++ P+ Sbjct: 232 QEAARLCSEEDGPGAYLPMILSDLSNAEKLREVSGYDSFVQAASGFEFPKLAAVRGKHSP 291 Query: 287 ----EKFSQRFLEDRTKAGGETPR-HPLFEAIDQLLAEPL--SIRDLVITRALAEIRETV 339 +K R K E + LF + +++LA+ S L++ + Sbjct: 292 VNPDKKEKVSECRKRIKKAVEKMKGQFLFASEEEILADLAGSSEAVLMLLTLAEDFAGRF 351 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGE-------VLAAAIRTRFPVAMIDEFQDTDPQ 392 +KR R + F+D+ L E E A + +F ++DE+QD++ Sbjct: 352 EAKKRERNLVDFNDLEHLALQVLYQEEKEGGEHRPGEAADLLAGQFDEILVDEYQDSNLV 411 Query: 393 QYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTLDT 445 Q + R + + T + ++GD KQ+IY FR A +++ + L Sbjct: 412 QEALIRAVSRERFGTPNVFMVGDVKQSIYKFRLARPELFLEKYHSYTKEDSLYQKIELHQ 471 Query: 446 NWRSAPGMVNSVNKLF-----------SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 N+RS ++ S N +F S T++ + F P+ + Sbjct: 472 NFRSRRQVLESTNDVFYRIMTENLGSISYTEETALHPGASFEPLPQERGRKEAELSGSAA 531 Query: 495 TQPAMKM------------------------WLMEGESCGVGDY--QSTMAQVCAAQIRD 528 Q A + ++E + DY Q A++ +IR+ Sbjct: 532 GQTAGEAGEDGPLEEQRDPFSTEILLINTKDSVLEELDDDISDYTRQELEARMIGKRIRE 591 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSV 587 + R DI +L+RS A+ + L IP+ + ++ Sbjct: 592 LTDPERGCPVWDKELGRYRKAEYRDIVILLRSVSGWAESFVETLAHQGIPA-FAESKTGY 650 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN--------------- 632 F T+E + ML L + P ++ L + L GL ++ + Sbjct: 651 FTTIEVETMLNFLAVLDNPMQDIPLTAVLKAPFFGLTDRELAEIAARFKHSANRGQDRGM 710 Query: 633 -------------------------NDEHAWDVVVEEFDGYRQIWRK---RGVMPMLRAL 664 + + + F Q+ R+ + ++ + Sbjct: 711 YGAICLYLGESDQAGETMQSSAEGEREPEILEKLASFFRVTEQLRREAVYLPIHELIYRI 770 Query: 665 MSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 + + A GE R ++ + E T ++++ + L+ + Sbjct: 771 FDVTGYYDYVSAMPAGETRRANLDMLVEKAAAYEATSYRGVFHFIKYIEK--LKKYNTDF 828 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF--RVQEQAFYHDRHSFEAVLDLN 781 + + V+I++IHKSKGLE+P+V++ + R + F D Sbjct: 829 GEASTAAEGGNTVRIMSIHKSKGLEFPIVFVAAMGKQFNRQDTRGKILIDSRFGIGTDYL 888 Query: 782 AAPESVD-----------LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 A + + E + E+LR+LYVA+TR+ L + +K Sbjct: 889 NAETRLKAPTLKKNVLKRRMDLENMGEELRVLYVAMTRAKEKLILTASDRNLEAKLEKWK 948 Query: 831 T--------------DVHQSALGRLLQKGEPQDAAGLRTCIEA--LCDDDIAWQTAQ--T 872 + S L +L E + A L ++I Q + T Sbjct: 949 ELLDTGERGLAFTLLSLAGSYLDWVLMAMEGGVCRIWMREVMAKELLSEEIGEQVRRKVT 1008 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRV----TSYS-------GLQQRGHGIAQDLM 921 D W + E A + + GD S+S L+ D+ Sbjct: 1009 KDMLLWPDREEEGEESPASQIFGMLGDEEYRKRLEESFSFQYPWEDELRLNTKMSVSDIK 1068 Query: 922 PRLDVDAAGVASVVEE-PTLTPHQFP--RGASPGTFLHSLFEDLDFTQPVDPNWVREKLE 978 D + ++ + P+ + +GA GT H E L F + + ++E+L+ Sbjct: 1069 KEGDEELFEESAFLPTIPSFLSGEEKEVQGARRGTAYHRAMELLSFHEIRKKSDIKEQLD 1128 Query: 979 LGGFESQWEPVLTEWITAVLQAPL--NETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQ 1035 E + E + + P ++ G ++ + E +F + I Sbjct: 1129 RLVEEGKMTADSRELVRESVIWPFFSSDLGKRMAAAQREGRLKKESQFVIGIP------- 1181 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 R+ ++ L ++G ID F +G L+DYK++++ Sbjct: 1182 ----AREMGDFNSDELVL--------VQGIIDAFFEEDGELVLVDYKTDYVE-------- 1221 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 RY +Q Y AL + + R+ + VIY F Sbjct: 1222 ---KEETLRERYGIQLDYYRRALMQMEKKRVKE--------TVIYSF 1257 >UniRef50_Q04AN7 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus RepID=ADDA_LACDB Length = 1227 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 214/1249 (17%), Positives = 427/1249 (34%), Gaps = 201/1249 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + +R ++ L V +LLV+TFT AA +E++ RI+ Sbjct: 21 LVSASAGSGKTSVLVERVIREIMDDH--------LEVNQLLVITFTRAAASEMKQRIKQR 72 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + RL EE D A A +L ++D A + TI FC ++ Sbjct: 73 LQD----------------RLQEETD--ASQADFLRRQLAEIDTAIISTIDSFCLDVIRR 114 Query: 140 NAFESGMLFEQQLIEDE---SLLRYQACADFWRRHCYPLPRE------------------ 178 F + + ++ D LL+ +A D + + Sbjct: 115 FYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLALYDAFAGDSNA 174 Query: 179 --IAQVVFETWK------GPQALLRDINRYLQGEAPVIKAP-----------PPDDETLA 219 ++F+ ++ +A L+ + Q E + + LA Sbjct: 175 NSARDLLFDLYQFAMARPNYRAWLQKLAAPYQLETSDVVDSTLWQEKIKPYLEEEFSNLA 234 Query: 220 SRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNS 279 + ++A D +++ A S R + ++ A + + Sbjct: 235 DKLTALMAEADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAACQFDGTL 294 Query: 280 YQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR--- 336 E + + + F A L + I A AE+ Sbjct: 295 RTNKEIADFVEEAKEVKEAGKQLVFNVYTSFYASSNADQHALLAKGAEIASAAAEVELAF 354 Query: 337 -ETVAREKRRRGELGFDDMLSRLDSALRSE--SGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 + KR L F DM L + + ++ A ++RF M+DE+QDT+ Q Sbjct: 355 IDRFNELKRADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQ 414 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-------HAHYTLDTN 446 + +R+ + L ++GD KQ+IY FR A+ ++ E N Sbjct: 415 DGLIQRL-KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGKQRIIFAEN 473 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS+ + +VN +F D+ + ++ I + G+ + P L + Sbjct: 474 FRSSQPVTQAVNLIF----DSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQE 529 Query: 507 ESCGVGDYQSTMAQVCA---AQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 +S D A ++I+ + + RPV DI++L RS+ Sbjct: 530 DSSATDDDGELNQGDLAMVISRIQKLI--ADQTPIFDPKTGQTRPVSYGDIAILTRSKTS 587 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 ++ +P +++ + + F+T E ++ L+ + P+++ L + L + + Sbjct: 588 NLDIKQEFDRYGVP-LFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPLVAVLRSPIFNF 646 Query: 624 NALDIETL---NNDEHAWDVV-----------------VEEFDGYRQIWRKRGVMPMLRA 663 ++ D+ + N + + + + R + +L Sbjct: 647 SSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFSLSHRISELLWT 706 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHILEPDSNA 722 + + E + A G++R ++ + E + + + + ++++ + + Sbjct: 707 IYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFIAR--MRKNQKD 764 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ---------------AF 767 +Q + E+ + V+++TIH SKGLE+P+V++ + + +Q +F Sbjct: 765 LAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVLDASGLGLSF 824 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 + E D A + + L E+ RLLYVALTR+ L + R D Sbjct: 825 AYPFDEAEYRADTLANAWLKIAKKKKLLEEEARLLYVALTRAKQKLILAANIKLPARTDL 884 Query: 828 KG--DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD---------------------- 863 G + + + GRL + + A L AL Sbjct: 885 AGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSDLATGQEGSL 944 Query: 864 -----DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR------------LPGDNWRVTSY 906 D AQ D++ + E A ++ D R T+Y Sbjct: 945 VFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPYLDASRTTAY 1004 Query: 907 ---SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF-----PRGASPGTFLHSL 958 S +++ +D + + A+ +P T F A GT H + Sbjct: 1005 QAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSAELGTASHLV 1064 Query: 959 FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ 1018 + D+ + D + + + + + L + + ++ + Sbjct: 1065 LQYYDYAK-GDKDAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFA---------- 1113 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 +FY T++ + V G + G+ + E L Sbjct: 1114 --KDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGY----YEAENGIIL 1167 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 DYK++ + +A+ +Y Q +LY AL+ R+ Sbjct: 1168 FDYKTDHVNPRKQD---EAIQK--LKEKYQGQLRLYERALNE--SGRLP 1209 >UniRef50_UPI00016C0036 Recombination helicase AddA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0036 Length = 1186 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 221/1255 (17%), Positives = 434/1255 (34%), Gaps = 231/1255 (18%) Query: 11 LRLPLQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69 L + LQ + L+ A+AG+GKT + ++ +L G + + ++ L+VTFT AA Sbjct: 9 LAIDLQDKNILVSAAAGSGKTAVLTERVIKRVLNTGKNR-----VDIDRFLIVTFTNAAA 63 Query: 70 AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTI 129 +E++ RI + + + +L + +A++ TI Sbjct: 64 SEMKERIEIKLGDALSTAADGEEVD------------------YLQKQLGLLGKASISTI 105 Query: 130 HGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQVVFETW 187 H FC +++ + E G+ + ++ Q A D Q+ Sbjct: 106 HSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAFEEESDAFYQLCDAYG 165 Query: 188 K--GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT-VKQQWRDAVGELD 244 G A I + + + + +A+ A A + + R + + Sbjct: 166 SVNGMDAXASMILQIYKFTQSTVFPQKWLAQQVATLXAGDNAAFEASLAADLRLELESIQ 225 Query: 245 ALIE-----------------SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 L+E S G + + ++ + + + + +SA A + Sbjct: 226 TLLERALVIAKKPNGPLHYADSIGFNLQNLSKMDLSSFANIVSALANCNIAALSRKRPAC 285 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQ--LLAEPLSIRDLV--------ITRALAEIRE 337 S L+D K+ T L D +LA+P I + R + Sbjct: 286 DLS---LKDAAKSLSSTATSRLKYLQDNYAILADPTVISKTASISTIFKELARLVTTFET 342 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQ 392 + +K+ G L F+D+ L +ES +A + + IDE+QD + Sbjct: 343 RYSEKKQDLGVLDFNDLEHYAIKLLVTESDGALAPTTVAKELGKYYSEIYIDEYQDVNDV 402 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA---------HYTL 443 Q I I + ++GD KQ+IY FR ++ ++ + L Sbjct: 403 QETILSAIATNGATR--FMVGDIKQSIYKFRLSNPKIFLDKYNRFQQFSPTAAADIRIDL 460 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS ++++ N++F + + I + + + ET ++ L Sbjct: 461 SHNFRSRAIILDAANEIFERLMRPAVGDLIYDQAQRLYAGRE---YATFDETAKQCELHL 517 Query: 504 MEGESCGVGDYQS--TMAQVCAAQIRDWLQAGQRGE-----ALLMNGDDARPVRASDISV 556 +E + D + A++ AA I ++ G + D R V DI++ Sbjct: 518 LELSTLDADDAEEPSNKAELEAAMIAKIVKDILDGNSNPKIVYDKDLDIYRAVEPRDIAI 577 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 LVR++ + +AL + + Y S FE E + M+ L+ + ++ S L Sbjct: 578 LVRAKAVSTAFENALYKVGV-DAYAEISKSFFEATEVELMINFLKIIDNINQDIPFLSVL 636 Query: 617 ATSMMGLNALDIETLNN--DEHAWDVVVE---------------EFDGYRQIWRKRGVMP 659 +S++GL+ ++ + D ++ V E +G+R++ + V Sbjct: 637 HSSLLGLDFDELSEIRTYADGSFYNACVAYKQLHPHSKLADFFAEIEGFRKLSKMVPVSE 696 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEP 718 ++ + + G R ++ + + + + +L Q L Sbjct: 697 LIDQVFLQTGYLGYVSMLDHGAIRSANLRILKQTAIDFEQNTKVGLFNFLIFLEQ--LRN 754 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ----EQAFYHDRHSF 774 D + Q + V+I++IHKSKGLE+P+V L Q + H++ Sbjct: 755 DEASIQQAKSAVDQNNTVKIMSIHKSKGLEFPIVILANAHKRFNQMETYQPILLHNQLGL 814 Query: 775 EAVL-------DLNAAPESVDLAE--AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 A D P + E ++E++R+LYVALTR+ + Sbjct: 815 GAQFRDMEKYVDYTTLPYLAIKNKIFNENISEEIRILYVALTRAKEKLIVTAV------- 867 Query: 826 DKKGDTDVHQSALGR-LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVS 884 T+ S L LL E D+ +R + + W N S Sbjct: 868 -----TNSFDSLLSNALLHATEHIDSIFIRN-----QNSYLNWIILALAHNP--YTLTES 915 Query: 885 TAELNAKTLQRLPGDNWRVTSYS-----------------------GLQQRGHGIAQDLM 921 A NA T+ + + S++ + + ++ Sbjct: 916 VANFNAGTMGQWIIKQYSRLSFADADADFVEPPSSNEVIQDIFDLIATDTSSNSLKDEIF 975 Query: 922 PRLDVDAAGVASVVEEPTLTPHQFPR-------------------------GASPGTFLH 956 +LD + + ++ + G S G +H Sbjct: 976 AKLDYEYRHILDTTLPQKISVSELKTKMSDSISSAPYSSNIPKFIASSSYDGLSHGNIIH 1035 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARN 1016 ++F+ LD+ + D +R+ +E + + Q L + ++++ + + Sbjct: 1036 AVFQHLDYLKYTDHTSIRQNIE----------------SMIAQNKLAKNTLAIANI---D 1076 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 + V S + + + P P E R ++ G +D F G+ Sbjct: 1077 RLV----SFANSAIINRMRKAAFSFKEQPFLYQLPQSEG---RSLISGIVDAYFEENGKI 1129 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL---------HRYL 1122 ++DYK++ T+ + RY LQ Q Y+ AL RYL Sbjct: 1130 IIIDYKTDS--------TKAHTKIEIVD-RYRLQIQWYSEALQNITHKVVTERYL 1175 >UniRef50_C6CTT6 Recombination helicase AddA n=2 Tax=Firmicutes RepID=C6CTT6_PAESJ Length = 1277 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 228/1300 (17%), Positives = 424/1300 (32%), Gaps = 274/1300 (21%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + +R + V+ LLV TFT+AA AE++ RIR Sbjct: 30 VLVAAAAGSGKTAVLVERIIRKISSFS---------DVDRLLVATFTKAAAAEMKDRIR- 79 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 LE+ ++ ++ L M+ A++ T+H FC ++ Sbjct: 80 --------------------IALEKELERQPESEHLRRQLALMNRASITTLHSFCLDVIR 119 Query: 139 LNAFESGMLFEQQLIEDES------LLRYQACAD-----------FWR-----------R 170 G+ ++ + + Q + F R Sbjct: 120 RYYPLIGLDPGFRIANETESELMRIDVLDQLFEEKYEGSSGDSGAFLRLADRYGGERGDE 179 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 Y L +++ P+ LR + P +L + ++ Sbjct: 180 PLYKLVQQLYDFAQSHPW-PEHWLRQTAASFMVDNVEGLRSSPWVASLRADVELALSGAA 238 Query: 231 TVKQQWRD----------AVGELDALIESSGIDRRKFNRSNQAKWIDKISA--WAEEETN 278 ++ Q + + G W + A + + + Sbjct: 239 SLLNQAMQLTREPAGPAPYAATFEEDLAIVGGLAETVRMHPWEMWFESFQAVQFGKLKAM 298 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEI 335 + + + L D+ K + LF + A + L+ ++ + E Sbjct: 299 RGDDYDKTMQEQAKELRDQAKKLISSLADELFGRSAEEFAWELQELAPLMAALSELVIEF 358 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQD 388 + KR +G L F D+ LR+ A + +F ++DE+QD Sbjct: 359 GQRYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELTTPSPAATEYQRQFDEILLDEYQD 418 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HYT 442 T+ Q I I + ++GD KQ+IY FR A+ +M A Sbjct: 419 TNMVQEAIVSLIANPHAGNR-FMVGDVKQSIYRFRLAEPNLFMSKYKNYGAPGGDGLRID 477 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFR--------------------------EIPFI 476 L N+RS +V+ VN +F + E+ I Sbjct: 478 LARNFRSRLEVVDGVNDVFRAIMRETVAEMDYDKRAELVCGASYPEPDLPGRFAVELAVI 537 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 + + + + ES A++ A QIR L G R Sbjct: 538 DKAGSSNEEDGAVSPADSDDESEQGAGPAAESAEELQTAQLEARLIARQIRSLLDEGFR- 596 Query: 537 EALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 ++RP+ DI +L+R ++ A + + L IP+ Y F+ E + Sbjct: 597 -VYDGKKRESRPMEWRDIVILLRATQAWAPVIIEELQGAGIPA-YAELSSGYFDATEVET 654 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN----------------------- 632 +L LL+ + P ++ L L + + GLNA ++ + Sbjct: 655 ILSLLRVIDNPYQDIPLAGTLRSPIFGLNAEELALIRIGAMQDTYYDAVLQAAGDLLLPD 714 Query: 633 NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE 692 + +E D +R R+ + ++ ++ + GG +R ++ + + Sbjct: 715 ELRRKLSLFLERLDRWRNDARQGSLADLIWSIYRETGYYDFAGGLPGGVQRQANLRALHD 774 Query: 693 LL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 Q T +R++ + +++ L +++V+I++IHKSKGLE+P+ Sbjct: 775 RARQYEATSFRGLFRFLRFVERMRDSGGDLGTARA--LGEQENVVRIMSIHKSKGLEFPV 832 Query: 752 VWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA-----------------ER 794 V++ + Q+ R +F L P+ +D + E Sbjct: 833 VFVAGLGKNFNQQDL----RSAFLKHKQLGFGPKYIDPEKRVSYPTLPFLSIRRRMRMEM 888 Query: 795 LAEDLRLLYVALTRSVWHCSL-------------------------------------GV 817 LAE++R+LYVALTR L + Sbjct: 889 LAEEMRILYVALTRPKEKMFLVGTVSDAAAKQRRWQSASDAKGYISDFRLSSASTFLDWL 948 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 PL ++ D V RLLQ A + +EA + + Q +++ Sbjct: 949 GPLAAAAFNQLPDETVPGHEDSRLLQWRAGVVDAAMLG-LEAAIGVEERTEEDQAREDRM 1007 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWRV-----------TSYSGLQQRGHGIAQ------DL 920 V ++ + + + WR TS + +++ + L Sbjct: 1008 QGVLSLAQLDQVEQDEELRNRLEWRYGYRASTLVAAKTSVTEMKRLHSEAVEMPEDSAAL 1067 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQF----PR--------GASPGTFLHSLFEDLDFTQPV 968 P + + F PR A GT H L + L V Sbjct: 1068 YPADTFSDRQQEDGKKSSGGGSYTFRLRRPRFMEEAALTAAEKGTVSHLLMQHLPLAGDV 1127 Query: 969 DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPIS 1028 D + + +L++ ++ L + L ++A F I Sbjct: 1128 DVD-------------RLGSILSDMVSRKLLTARQADSIDLPAVAA-------FFDTEIG 1167 Query: 1029 EPLIASQLDTLIRQFDPLSAGCPPLEFMQ-----VRG---MLKGFIDLVFRHEGRYYLLD 1080 + L+ ++ +R+ P S P + G +++G ID +F E LLD Sbjct: 1168 KRLVHAK---WVRREVPFSCMFPAQRVYPGLAADMAGEPVLIQGVIDCLFEDENGIVLLD 1224 Query: 1081 YKSNWLGEDSSAYTQQAMAA-AMQAHRYDLQYQLYTLALH 1119 YK++ + Y M A R+ Q +LY A+ Sbjct: 1225 YKTDRI------Y----MKQWEQAAERHRFQLELYAEAIE 1254 >UniRef50_A3CVM7 UvrD/REP helicase n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVM7_METMJ Length = 1080 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 230/1177 (19%), Positives = 392/1177 (33%), Gaps = 213/1177 (18%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AGTGKT + YL LL + V +L +TFTE A E++ R+R I Sbjct: 20 VTAGAGTGKTHVLVQKYLSLL---------ESGVGVGNILALTFTEKAAGEMKIRVRRAI 70 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 E D L+ A V T H FC +L Sbjct: 71 AEKEGERWDAIRDEFLW--------------------------AKVSTFHSFCASVLREF 104 Query: 141 AFESGMLFEQQLIEDESL--LRYQACADFW--------RRHCYPLPREIAQVVFETWKGP 190 + +G+ ++++ LR +A D R R + + + Sbjct: 105 SIGAGVGPSFAVLDEGEAFRLREEAIDDLIHGDPPTACRDAVIGALRAVGAYELKNY--- 161 Query: 191 QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQI-VARIDTVKQQWRDAVGELDALIES 249 L +R EA ++E L + + + + ++ A ++ L + Sbjct: 162 --LEALYSRRGAAEAFFAALAESEEEVLDAWRTALERCQTEALEAFLSRAAPSIETLRDL 219 Query: 250 SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPL 309 + R R ++ + E +L + R + K L Sbjct: 220 AA--RYPGERDPAGAYLRAVEPCLAGEIAVAELAAVHDNSGFRKNMGQKKNWEGDDLDNL 277 Query: 310 FEAIDQLL----------------AEPLSIRDLVITRALAEIRETV----AREKRRRGEL 349 A L A+P + L R L + + EKRR L Sbjct: 278 RAAYGVLRQCLTDHAGACSLTLDAADPFTRATLDFLRDLGVVFKAFLDSVEAEKRRMNAL 337 Query: 350 GFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL 409 FDD+++R R + G+++ R+RF ++DEFQDTDP Q I R + L Sbjct: 338 DFDDLVNRTHRLFR-DRGDIVETHFRSRFRFILVDEFQDTDPVQIAIIRTLLGDS--ANL 394 Query: 410 LLIGDPKQAIYAFRGADIFTY-----MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQT 464 ++GDPKQ+IY FR AD+ + + R LD N+RS P +V N +FS Sbjct: 395 FVVGDPKQSIYLFREADVTQFSHTRDLIERDLGGETVALDVNFRSTPEVVGFTNAVFSAL 454 Query: 465 DDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCA 523 E + P+ + ++ A ++++ L + + + A++ A Sbjct: 455 MAEAGRPWEFLYEPLHAFRRDDA----------GSVELLLCQ-KIRDRAAGRRAEAEMAA 503 Query: 524 AQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSN 583 +IR + +RGE + + RP D++VL+ R A AL +P ++ Sbjct: 504 RKIRSLV---ERGEKRVSRDGEVRPAGYGDVAVLLERRTNLAYYEWALARYGVPY-HVHA 559 Query: 584 RDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN--DEHAWDVV 641 +E E ++ +L+ + + L L + G + + + W+ + Sbjct: 560 GLGFYERQEVYDLYNILRFLANNLDDAALYGVLRSPYFGFSDARLFHIARAPGASLWERL 619 Query: 642 VEE-------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 + + R+ +LR ++ I AGGE+ ++ + L Sbjct: 620 QAAAEPAAATLREWLSLSRRLPPARLLRRIVDESGIFVVFGGMAGGEQAAANVEKLIALA 679 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 ++A + V L + I D + +D V I+T+H +KGLE+P+V + Sbjct: 680 RDA--DCSTLAGFVAELGRSIDAGDREGDAPLDLASADS--VSIMTVHAAKGLEFPVVVV 735 Query: 755 PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE------------AERLAEDLRLL 802 P + + + + E + AE RL Sbjct: 736 PDLAETPRSGGGTIMVEDGLLLGVSIPNPANDHEREETPVLRLLKDEYRQKEEAERKRLF 795 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK-----GEPQDAAGLRTCI 857 YVA+TR+ H L + + D + L L + G Sbjct: 796 YVAVTRAEDHLIL-CGEMPVAVPESLRDARTRMAWLAHCLGLCDEVYARGEAVLGTLRIP 854 Query: 858 EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIA 917 L I +T +DV A + A G RV S S L+ G A Sbjct: 855 ITLDPAAIPVDVQETVPVCLPVPDDVPAAPVPAGIPSN--GKKERVYSASELEAYLRGPA 912 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKL 977 + +P + G +H +F + DP V L Sbjct: 913 ESRLPVFAAGEDALTR------------------GLVVHEVF------RGRDPAAV---L 945 Query: 978 ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 G + E L +PL + + ++ E+ F Sbjct: 946 RRYGLDPAGAVEYQELYVRFLASPL------MRGIVRDHR--EVPF-------------- 983 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGM-LKGFID-LVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 +V G +G ID LV R G + L+DYK+ G+ Sbjct: 984 -----------------SARVNGFAFRGVIDRLVQRVNGTWMLIDYKTGTPGDAGE---- 1022 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 Y +Q +Y A + L + Y Y Sbjct: 1023 -----------YAIQMAVYHRAAAQILSAPVTPYLYF 1048 >UniRef50_C6JEU5 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEU5_9FIRM Length = 1269 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 225/1303 (17%), Positives = 431/1303 (33%), Gaps = 258/1303 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + L + P+ ++ LL++TFT AA E++ RI Sbjct: 19 NILVSAAAGSGKTAVLVERILSKITDK------EHPVDIDRLLIMTFTRAAAGEMKERIS 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + I + ++P E L + + A + TI GFC ++ Sbjct: 73 AAIEKAL-------CEDPDNEHLQRQTT--------------LLHTAQITTIDGFCAYII 111 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVV--FETWKGPQAL 193 G+ + ++ LLR + + + V F T K + L Sbjct: 112 RNYFHLIGLDPGYRTADEGELKLLRGDVVKALLEEYYAKKDEKFQKFVECFATGKSDENL 171 Query: 194 LRDINRY----LQGEAPVIKAPPPDDETLASRHAQIV--ARIDTVKQQWRDAVGELDALI 247 I + + P D+ ++ + + +D + E + L+ Sbjct: 172 GNLIQKLYEMAMSNPFPQEWLSGCMDDYRIDSLEELRETEWMRMLWDAVKDELQEANLLV 231 Query: 248 ESSG-----------------------------IDRRKFNRSNQAKWIDKISAW-----A 273 + + ++R +N + + + A Sbjct: 232 QEARRICSEPDGPYLYDEALSSDLLLIRSLQELAEKRDYNGTAEILMKPSFARLSTKKAA 291 Query: 274 EEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA 333 + + Q + L + L++ + ++ L E I + ++ Sbjct: 292 DVDEQKKQRVKDLRDEEKGILKELGQRYFQSAEKELLEVIRYIRGPVE-----MLVELTV 346 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVL-----AAAIRTRFPVAMIDEFQD 388 +E KR + L F DM L ++ GE + A + ++ ++DE+QD Sbjct: 347 GFKERFGEAKREKNILDFTDMEHFALQILMTKEGEEIHMSQAARELSAKYDEVLVDEYQD 406 Query: 389 TDPQQYRIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHY 441 ++ Q + + + + ++GD KQ+IY FR A +M+ Sbjct: 407 SNLVQELLTTAVSGWINQKKNIFMVGDVKQSIYRFRLARPELFMEKYKSYSTEEAQEQRI 466 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMF-----REIPFIPVKSAGKNQALRFV------ 490 L N+RS ++ SVN +F Q + ++ P S + ++ FV Sbjct: 467 DLHKNFRSREQVLESVNFIFRQIMGEDLGGITYDKDAALYPGASFPEGESEEFVKTEVLL 526 Query: 491 --FKGETQPAMKMWLMEGESCGVGDYQST-----MAQVCAAQIRDWLQAGQRGEALLMNG 543 GE ++ + G S + ++ A A +I++ + Q + Sbjct: 527 VERDGEELSDVQDYEDAGASGNRREMENQTGQELEALAIAQRIKEIVGKEQ---IVDKEK 583 Query: 544 DDARPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 + R V DI +L+R+ A+ R+ L IP VY ++R F E +L L+ Sbjct: 584 KEYRSVEYGDIVILLRTAYGWAETFREVLASQGIP-VYCTSRTGYFSATEIVTVLNYLKV 642 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV------------------ 641 P ++ L L + ++G + ++ L D ++ V Sbjct: 643 CDNPLQDIPLMGVLRSPIVGCTSQELAELRIQYPDGLLYESVSAYAGENEIPEKELDPDK 702 Query: 642 -------------------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 + + R + V ++ ++ + A Sbjct: 703 LKSELLNSNLRTDEKNSLNIKLKGFLSLLEKVRNMATYTPVHELILYVLKETGYGDYARA 762 Query: 677 TAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GGE+R ++ + E + T VR++ Q L+ + + Sbjct: 763 LPGGEQRFANLTMLVEKAMDYEKTSYRGLFNFVRYIEQ--LQAYQVDYGEVNLTGAGNTA 820 Query: 736 VQIVTIHKSKGLEYPLVWLPFITN-FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE--- 791 V+I+TIHKSKGLE+P+V++ + F Q+ H + PE +A Sbjct: 821 VEIMTIHKSKGLEFPVVFVAGMGKQFNFQDMNAGLLLHPELGIGADAIIPEKRVIASSLN 880 Query: 792 ---------AERLAEDLRLLYVALTRSVWHCSL--GVAPLVRRRGD-KKGDTDVHQSALG 839 E L E+LR+LYVA+TR+ L V L ++ + + + Sbjct: 881 KQVIRRQLLKESLGEELRVLYVAMTRAKEKLILTGTVGKLEKQMMSLSRFLDEEEELLPL 940 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP----------------WQVNDV 883 K + A L + ++ W+ QP Q+ + Sbjct: 941 GTRMKAKNYWAFVLPALVRHRAMSELLWEYGILMKKQPGIYDDISEFVIKKITVRQMTEK 1000 Query: 884 STAELNAKTLQRLPGDNW---------------RVTSY----------------SGLQQR 912 + +Q NW + S+ S L++R Sbjct: 1001 AVLIQAGNQMQEEYLKNWDENKVYDEVVKEEIEKRFSFVYPYKYLEDIPVKVSVSDLKKR 1060 Query: 913 GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP----RGASPGTFLHSLFEDLDFTQPV 968 +L + V A E P +GA+ GT H + E LD+ + Sbjct: 1061 SWHDESELEENISVSAEEQDEEQEAPVPAFMAEKQEEYKGAARGTAYHRVMECLDYAEAD 1120 Query: 969 DPNWVREKLELGGFESQWEPVLTE--WITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYL 1025 +R +L+ + E I + + + G + + + + E F + Sbjct: 1121 TEEQLRAQLKRLLESQKMTEQEAECIRIRDIRRFVESGLGQRMKKAAMKKHLYREQPFVI 1180 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 + AS LD + +++G ID F E L+DYK++ Sbjct: 1181 QRN----ASMLDD---------------GWKNETVLVQGIIDAYFMEEEEIVLVDYKTDR 1221 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 + + Y +Q + Y AL R R+ + Sbjct: 1222 VRRG---------QEQKLINLYHVQLEDYARALERMTGKRVKE 1255 >UniRef50_A2RH77 ATP-dependent helicase/nuclease subunit A n=4 Tax=Lactococcus lactis RepID=ADDA_LACLM Length = 1203 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 216/1246 (17%), Positives = 449/1246 (36%), Gaps = 236/1246 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKTF +A + + + ++ L + TFT+ A +ELR R+ Sbjct: 20 NILVSASAGSGKTFVMAQRIV---------EKVKQGIEIDRLFISTFTKKAASELRMRLE 70 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 ++ + R +E++D+ + A L LA + + A + T+ F Q++ Sbjct: 71 RDLKKAR----QESSDD--------------EEAHRLTLALQNLSNADIGTMDSFTQKLT 112 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDI 197 N + +++ D++ +D R+ + E E+ + + Sbjct: 113 KANFNRVNIDPNFRILADQTE------SDLIRQEVFEQLVESYLSADESLNISKDKFEKL 166 Query: 198 NRYLQGEAPVI----------KAPPPDDETLASRHAQIVARIDTVKQQ----------WR 237 + + ++ + + ++ Q + +T K + Sbjct: 167 IKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFLKGFETYKSLTDLSEDFTVNVK 226 Query: 238 DAVGELDALIESS-----------GIDRRKFNRSNQAKWIDKISA--------------- 271 + + L+E+S G D+ N+ + ++ IS Sbjct: 227 ENLLTFFELLENSLTNGVIAKKGAGRDKANLILDNKNELLEAISKKDFVTCTALFLSIDT 286 Query: 272 ----WAEEETNSYQLPESLEKFSQRFLEDRTKAG---GETPRHPLFEAIDQLLAEPLSIR 324 + ++ L + Q + ++K G + + I++ + I Sbjct: 287 DIRVGSSKDEALSALKKDFSAQKQDLVGSKSKPGELRKFVDKIKHGQLIEKYQNQAFEI- 345 Query: 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMID 384 + + + + +T K+ + D+ L E + +R + MID Sbjct: 346 ASDLQKFIIDFYKTYLERKKNENAFEYSDIAHFAIEIL--EENPDIRENLREHYDEIMID 403 Query: 385 EFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH---- 440 E+QDT Q R+ + + L ++GD KQ+IY FR AD +++ Sbjct: 404 EYQDTSHTQERMLELLSNGH---NLFMVGDIKQSIYGFRLADPGLFLEKYKSYDQAENPN 460 Query: 441 --YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 L N+RS ++N N +F D + E+ + ++ + + + E Sbjct: 461 QLIRLKENFRSRGEVLNFTNDIFKHLMDEKLG-EMTYGKEEALVQGNISDYPVEAEKDFY 519 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 ++ L + E+ + + + ++ +I+ A Q + L+ G V DI++LV Sbjct: 520 PELLLYK-ENTSEEEIEDSEVKISDGEIKG---AAQEIKKLIEYG-----VEPKDIAILV 570 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 RS+ ++ D L +IP V R +++E ML +L+A+ P + +L + L + Sbjct: 571 RSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRS 630 Query: 619 SMMGLNALDIETL----NNDEHAWDVVV-------------------------EEFDGYR 649 + G N ++ + + D WD ++ ++F +R Sbjct: 631 PLFGFNEDELTRISVQGSRDLRFWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWR 690 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS-ELLQEAGTQLESEHALV 708 ++ K + +L + + + + A GE R ++ +S + + V Sbjct: 691 KLVNKIPIHRLLWKIYTETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFV 750 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI----TNFRVQE 764 R +++ + + + AS + ++ ++ V+++T HKSKGLE+ V+L + + ++E Sbjct: 751 RLINKFMEQNNDLAS---VNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKE 807 Query: 765 QAFYHDRHSFEA--VLDLNAAPE-------------------SVDLAEAERLAEDLRLLY 803 H + DL A P+ + DL + L+E++R+LY Sbjct: 808 DVILSREHGLGMKYIADLKAEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLY 867 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VA TR+ L V + + + G++L + G + I AL + Sbjct: 868 VAFTRAKKKLYL-VGKIKDTDKKAGLELYDAATLEGKILSDKFRNSSRGFQHWILALQNA 926 Query: 864 D---IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL 920 + + + ++ S + + DN + S+S + I Sbjct: 927 TKLPMKLNVYTKDELETEKLEFTSQPDFKKLVEESEKFDN--IMSFSDEIKEAQKIMNYQ 984 Query: 921 MPRLDV------------------------DAAGVASVVEEPTLTPHQF-PR---GASPG 952 P + V+ V L F P+ A G Sbjct: 985 YPHQAATELSSIQTPSQVKKRSYEKQLQVGEVQPVSEFVRVKNLDFSDFGPKKITAAEMG 1044 Query: 953 TFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQL 1012 + HS + DF+Q D + L+ GF+ + + + IT +L +L Sbjct: 1045 SATHSFMQYADFSQA-DLFSFQATLDEMGFDEKIKNQID--ITKIL---------TLFDT 1092 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 E +D ++ + + EF + + +++G D + Sbjct: 1093 EFGQFLSE--------------NVDKTVK--EAPFSMLRTDEFAKEQYIVRGICDGFVKL 1136 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 + L DYK++ A++ RY Q LY+ AL Sbjct: 1137 ADKIILFDYKTDRFTN------VSAISE--IKERYKDQMNLYSEAL 1174 >UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Actinomycetales RepID=C1RHS1_9CELL Length = 1794 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 251/1031 (24%), Positives = 392/1031 (38%), Gaps = 125/1031 (12%) Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV- 232 E+ V + LRD + V DD LA R ++ + V Sbjct: 56 TATSELRDRVRARLVATERALRDPAARTSDDVLVRHLADVDDAELARRRDRLTVALSQVD 115 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPE--SLEKFS 290 G ++ + G A + ++ E + L ++ Sbjct: 116 AATITTTHGFCQQMLRALGTTTGGGVVEPGATLVPDVADLEAEVVDDLYLAAYAGADQPV 175 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELG 350 + R A H A D P R +R V R +R + Sbjct: 176 LTVADAREVARAAVSDHAALLAPDD---APPGTAPDHRYRLARAVRHEVVRRRRAAHVVD 232 Query: 351 FDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL 409 +DD+L+ L AL + G A +R + V M+DEFQDTD Q++I R +H L Sbjct: 233 YDDLLTLLRDALTDPATGAAAAERVRAPYRVVMVDEFQDTDQVQWQILRTAFHG--HRTL 290 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 +LIGDPKQAIYAFRGAD+ TY++AR V TL +WR+ +++ + L A Sbjct: 291 VLIGDPKQAIYAFRGADVHTYLEARG-VATTATLGRSWRTDAPVLDGLAHLMGGA--ALG 347 Query: 470 FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD-YQSTMAQVCAAQIRD 528 I PV++A + L + + + G + D +S + + AA++ Sbjct: 348 DPRIVVHPVEAAHTERRLDGGPPVLVRRVTRRAVGAGSAAPKVDTVRSVVHRDVAARVVL 407 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 L + L +GD RPV D++VL R +A VR+AL + +P+V +S SVF Sbjct: 408 TLT-----HSRLRDGDAWRPVLPGDVAVLARRNADALAVREALAAVGVPAV-VSGLSSVF 461 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGY 648 T A++ L LL A+ + +A T +G +A + ++ + + + + + Sbjct: 462 TTAAARDWLVLLSALAATGDTARVAAAALTPFVGWDATRLAGASDAQR--EDLADRMRTW 519 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHAL 707 + +GV +L+A +A + E L A GER LTD+ H+ E+L A AL Sbjct: 520 SHVLAGQGVAALLQA-TAAAGLHERLAARVDGERVLTDVRHVGEVLHAAARDAGLGAAAL 578 Query: 708 VRWLSQHILEPDSN-ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF---RVQ 763 WL I E + A + RLE+D VQ+VT+H +KGLE+P+V +PF + R Sbjct: 579 TEWLRARIDEAAVDYAEERSRRLETDAAAVQVVTVHAAKGLEFPVVMVPFAWDRWVPRDP 638 Query: 764 EQAFYHDRHSFEAVLDLNAA----PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 YHD + E+ +AE EDLRL YVALTR+ L AP Sbjct: 639 SVLRYHDDDGTRRLHVGGRGSPGYDEARARHQAEEAGEDLRLAYVALTRASSQVVLWWAP 698 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD----------IAWQT 869 V + LG G P D + +A D + Sbjct: 699 -----STVSASGAVGRLVLGARDADGLPPDTVPVPRDDQAAAGFDALAAGSGGTVVHETV 753 Query: 870 AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH--GIAQDLMPRL--- 924 W+ L L R WR TSYSG+ H G A +P Sbjct: 754 DAAPPVVRWEPVRGEPGPLEVARLGRGVDLTWRRTSYSGITAAAHDAGPAGPSVPDRPGV 813 Query: 925 --DVDAAGVASVVEEPTLTP-----------------------------------HQFPR 947 + + G+ + P TP P Sbjct: 814 TDEPEDPGIQDETDGPAPTPPPHAGAGDEPDLAVLAATTPDPALVAALRAVRSPLADLPG 873 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWE----PVLTEWITAVLQAPLN 1003 G + GT +H + E++D +R + L + + + P Sbjct: 874 GTAFGTLVHHVLENVDTAAADLRGELRARCAEAAGGGGGLGLDPDALADALLPSMHTPAG 933 Query: 1004 E--TGVSLSQLSARNKQVEMEFYLPISEP-------------LIASQLDTLIRQFDPLSA 1048 G +L+Q+ ++ E++ LP++ +A LD + DP +A Sbjct: 934 PLLGGRTLAQVPPHDRLAELDLELPLAGGDLDPAGRRPATLADVADLLDAHLDPDDPFAA 993 Query: 1049 GCPPLEFMQ---------VRGMLKGFIDLVFRH----EGRYYLLDYKSNWLGEDSS---- 1091 L ++ +RG L G ID V R + RY +++YK+N L Sbjct: 994 YAGRLRWLHADPGTRPAALRGYLTGSIDAVLRVDVDGDTRYVVVEYKTNRLAPPDDPLTA 1053 Query: 1092 -AYTQQAMAAA 1101 Y +AM A Sbjct: 1054 WHYRPEAMRTA 1064 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 18/219 (8%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V E PL G ++EASAGTGKTFTIAAL R + + ELL Sbjct: 1 MTAVFEVCGPLP---AGTTVLEASAGTGKTFTIAALAARYVAEGHA--------LLPELL 49 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACL--RETTDNPLYERLLEEIDDKAQAAQW--LLL 116 +VTF AT+ELR R+R+ + A T + + R L ++DD A + L + Sbjct: 50 LVTFGRTATSELRDRVRARLVATERALRDPAARTSDDVLVRHLADVDDAELARRRDRLTV 109 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESG---MLFEQQLIEDESLLRYQACADFWRRHCY 173 A Q+D A + T HGFCQ+ML +G + L+ D + L + D + Sbjct: 110 ALSQVDAATITTTHGFCQQMLRALGTTTGGGVVEPGATLVPDVADLEAEVVDDLYLAAYA 169 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPP 212 + + V A+ +AP AP Sbjct: 170 GADQPVLTVADAREVARAAVSDHAALLAPDDAPPGTAPD 208 >UniRef50_B2KE90 UvrD/REP helicase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE90_ELUMP Length = 1074 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 213/1147 (18%), Positives = 427/1147 (37%), Gaps = 157/1147 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 ++EA AGTGKT + + L++ + ++VE ++ +TFTE A AE++ R+ Sbjct: 20 NIVVEAGAGTGKTTLLISRLCYLMI--------VKNISVERIVALTFTEKAAAEIKIRLS 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + ++ CL T + + LL + K + ++ + TIHGFC +L Sbjct: 72 AQLQKIIKECLSVTQKDKITLELLAHL-SKEEIIIRAQRVLEFLERGFISTIHGFCSYIL 130 Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDI 197 E+G+ + DE R W + E WK +L++I Sbjct: 131 KAYPVEAGISPSA--VVDEGQRRETVFKRLWNKWLEEELGGGGPK-EEIWK---RVLKEI 184 Query: 198 NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKF 257 N A D HA++++ + + + + + + G R+ Sbjct: 185 NLEDLYNYAFDMAGGKIDAYHPMSHAKVLSGVCFENAKIAEQMSCV--FLPPGGKSRKIE 242 Query: 258 NRSNQAKWIDKISAWAEEETNSYQLP-ESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQL 316 A I + +A+A +E + EK S D+ K + +D Sbjct: 243 RALASASIILQEAAFAFKEGKFQKTENPGPEKLSSS---DQAKGWDDENFETAVRIVD-F 298 Query: 317 LAEPLSIRDLVITRALAEIRETVAREK---RRRGELGFDDMLSRLDSALRSESGEVLAAA 373 R ++I A + + V + +G + FDD+L + + L++ ++ +A Sbjct: 299 ARSLYPDRQMLIADAFSLVSPFVNNARDTFEAQGLISFDDLLVKTRTLLKN--NLIVRSA 356 Query: 374 IRTRFPVAMIDEFQDTDPQQ----------YRIFRRIWHHQP--ETALLLIGDPKQAIYA 421 ++ +F + IDEFQDTDP Q + ++W+ L ++GDPKQ+IY Sbjct: 357 LKKQFEIIFIDEFQDTDPVQGELLLFLAEEEKSAAKVWNEIKLAPGKLFVVGDPKQSIYR 416 Query: 422 FRGADIFTYMKAR----SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477 FRGADI Y + L TN+RS +++ VN + + + ++P Sbjct: 417 FRGADITAYQLFTELILKQGGMICYLQTNFRSDAQIIDFVNCAGFKLIEERPGFQAKYVP 476 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 + + + K + + + DY+ A+ A I + G+ Sbjct: 477 INAKDGAPCDKDAVKD-------VIISSEQPQSADDYRHNQAEFTAKWIAE-----NAGK 524 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEML 597 L NG ++ DI+VL+R+ +AL + ++ + + E ++L Sbjct: 525 LKLSNGSV---LQYKDIAVLMRTSNAFNIFTEALKRYGVKYTVEEDK-NFYTAQEITDIL 580 Query: 598 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND---EHAWDVVVEEFDGYRQIWRK 654 LL + P +N L L + G N +I + + + + + F+ ++ Sbjct: 581 NLLSLLDNPYDKNALAGVLRSPFGGFNDDEIYQIFKQKFTDISAKKLPKGFERLGGFYKT 640 Query: 655 RGVM----------PMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESE 704 + ++ ++S+ AE GE+ ++++ + L AG Q E+ Sbjct: 641 LNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQTISNLQKFAALA--AGDQNENA 698 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESD-KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 ++L ++L+ + L + V ++TIHKSKGLE+P+V+L + Sbjct: 699 NSLGQFLANSKDLARQARGEGESPLADEFLSAVSVMTIHKSKGLEFPVVFLADMFRQESV 758 Query: 764 EQ-----AFYHDRHSFEAVLDLNAAPESVDLAEA-ERLAEDLRLLYVALTRSVWHCSLGV 817 +Q ++++D H A +A +++ + +E+ R+LYVALTR+ + Sbjct: 759 KQNKYSYSWFYDMHGLRAGPYADANLAFLEVQQLWHSKSEEARILYVALTRAKEKLFIL- 817 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 +T+ ++ L G + ++ + + + Sbjct: 818 ----------GNNTETKKTPARHLRNAGLWPELVTVKELPNDKLTHPLQLEYFPYAEPDQ 867 Query: 878 W-QVNDVSTAELNAKTLQRLPGDNWRVTS--YSGLQQRGHGIAQDLMPRLDVDAAGVASV 934 + + + + + W S Y +++ I+ + + + AG + Sbjct: 868 FIYKINFTPEDGGVLKNAGEWFNRWAKRSEIYEKIKEEALFISPSSLNKHEAVFAGSSDN 927 Query: 935 VEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWI 994 A GT H + E+ DF + P E ++ E Sbjct: 928 A-------------ALLGTLCHKMLENYDFKTVITPEQTAASAASLQIEDN--DIIKEAA 972 Query: 995 TAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLE 1054 + ++E L+ + + EM F Sbjct: 973 EIINNFTVSEVCKKLASMRVLAR--EMPF------------------------------T 1000 Query: 1055 FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 + + ++ G +D++ EG ++LDYK++ + +Y LQ Y Sbjct: 1001 YFEEGKIISGTVDVIVEQEGEIFVLDYKTDKTPDP---------------SKYALQLGAY 1045 Query: 1115 TLALHRY 1121 A+ + Sbjct: 1046 KRAVKKI 1052 >UniRef50_Q04UR1 Exodeoxyribonuclease V, beta chain n=4 Tax=Leptospira RepID=Q04UR1_LEPBJ Length = 1054 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 250/1103 (22%), Positives = 433/1103 (39%), Gaps = 155/1103 (14%) Query: 141 AFESGMLF-EQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINR 199 ++E F E ++ + D H PL + ++ T K L + + Sbjct: 6 SYELKSCFIEASAGTGKTYTIMEIVKDLIGEHGIPLTQ--ILILTYTEKAAGELKERLRK 63 Query: 200 YLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNR 259 L +A D T+++ H + E E+ ++ Sbjct: 64 KLIASDLTKEARELDQVTISTIHGFC-----------NMILQEYPVETETPSKWILTDSK 112 Query: 260 SNQAKWIDKISAWAEEETNSYQLPESLEKF--------SQRFLEDRTKAGGETPRHPLFE 311 + K+ EE ++ PE LE F + + ++P Sbjct: 113 ERLNSALYKLQH--EEWSSWVNHPEELETFLSLSGYISKKENILIAGSKLLSGKKYPYSN 170 Query: 312 AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLA 371 + AE + +I E VARE + + +D M+ + +L++ L Sbjct: 171 ETTPMNAETFRQKTALIA------AEMVAREFKTSEWMSYDQMILQTRDSLKNPH---LC 221 Query: 372 AAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA----LLLIGDPKQAIYAFRGADI 427 A+++R+ V +IDEFQDTD QY IF +++ L LIGDPKQ+IY FRGADI Sbjct: 222 KALQSRYKVGIIDEFQDTDSVQYEIFSKLFLEPNNETEQKILYLIGDPKQSIYGFRGADI 281 Query: 428 FTYMKARSEVHAH----YTLDTNWRSAPGMVNSVNKLFSQ----------TDDAFMFREI 473 TY++A+ E+ +H +L+ N+RS P ++ + N+LF + +F I Sbjct: 282 GTYLRAKKELKSHKAQEISLNVNYRSVPELICAYNELFGGKTGEQSFFPIVERSFESTPI 341 Query: 474 PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAG 533 + V + KN + K P + + ++ D ++ + +I ++ Sbjct: 342 EYSEVSAPEKNPKILLSDKHRQGPIQIVRFIGKDTWKTNDAKNAWGRFIGEEILKLTRSE 401 Query: 534 QRGEALLMNGDDAR------PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 ++ D + + +I++LV+S+ E +L L IP + + + Sbjct: 402 NPFSYQILEESDEKIHFAEKKLNFREIAILVKSKAEGKLAEQSLKLRGIPCSFYKQ-EGI 460 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE-FD 646 +++ E+ ++ + + ++ P + ++ R L + ++ + DEH+ + + D Sbjct: 461 YQSPESYQISNIFECLLDPNKPSSYRKLLLGDLFQIHPDHLVAF--DEHSIESYEKTTLD 518 Query: 647 GYRQIWRKRGVMPMLRALMSARNIA-ENLLATAGGERRLTDILHISE-LLQEAGTQLESE 704 ++ + R + R++ I ER+ T+ I LLQ Sbjct: 519 RWKTLAIDRKFPELFRSIEEDSRIFLTEDETDIDWERKKTNYGQIFRKLLQFQIANQAGL 578 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 ++ L +E + E++K VQI+T+H SKGLE+P+V+L +++ V E Sbjct: 579 EEILEELKLLQIESKNEQEPPLFEKETEKDAVQILTLHSSKGLEWPVVFLFHLSSNFVPE 638 Query: 765 QAFY------HDRHSFEAVLD-LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 Y +R+ ++ D S + + L E+ RLLYV +TR L Sbjct: 639 IYDYPVTEKDGERYWKLSLWDNEEEKKISKEEYSYQSLNENKRLLYVGITRPQVRLYLPF 698 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD----IAWQTAQTG 873 + K SA ++L LR +E D IAW Sbjct: 699 YTPTNHKKTKD-------SAYYKIL-------YPRLRHILENEPDPSLFHPIAWTPISFD 744 Query: 874 DNQPWQVNDVSTAELNAKTL---QRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 930 P N +E+ L + P R+ SYS L+ R + + L+ +A Sbjct: 745 QTDPNIRNRTRDSEVRLTPLLHCESEPSKTIRLHSYSSLKTRAKTSENESLSILE-EAEY 803 Query: 931 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT--QPVDPNWV---REKLELGGFE-- 983 S E T P A+ G+FLH+L E+LDF+ + P V R+ L F Sbjct: 804 FKSDDAEGAETEDALPSSAATGSFLHALLEELDFSFFKTKTPREVLKNRKVLSRMDFHLN 863 Query: 984 ----------------SQWEPVLTEWITAVLQA--PL-NETGVSLSQLSARNKQVEMEFY 1024 ++ E + L A PL ++T SL L N+ EM+F+ Sbjct: 864 YFRLSKENKKNTLSEKETYQKRAGEILWNSLNANIPLQDKTSFSLVDLGKENRISEMDFH 923 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 L + DP +LKG IDLVF + ++Y+ DYKSN Sbjct: 924 LSL----------------DPTGKN-----------LLKGSIDLVFEIKNKFYIADYKSN 956 Query: 1085 WLGEDSSAYTQQAMAAAMQ--AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 L Y+ ++ +++ +RYDLQ +Y + L+ YL+ D GGV Y F Sbjct: 957 LL----EDYSPLSLRRSVENTENRYDLQRDIYAMVLYEYLKDLFGPKDVFQKIGGVYYFF 1012 Query: 1143 LRGVDKEHPQQGIY---TTRPNA 1162 LRG+ K GIY P+ Sbjct: 1013 LRGM-KHGENSGIYSDFHWSPDR 1034 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 114/327 (34%), Gaps = 47/327 (14%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 IEASAGTGKT+TI + L+ + + ++L++T+TE A EL+ R+R Sbjct: 11 SCFIEASAGTGKTYTIMEIVKDLI--------GEHGIPLTQILILTYTEKAAGELKERLR 62 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + A L R++D+ + TIHGFC +L Sbjct: 63 KKL-----------------------------IASDLTKEARELDQVTISTIHGFCNMIL 93 Query: 138 NLNAFESGMLFEQQLIEDESLL---RYQACADFWRRHC-YPLPREIAQVVFETWKGPQAL 193 E+ + L + + L Y+ + W +P E + + + Sbjct: 94 QEYPVETETPSKWILTDSKERLNSALYKLQHEEWSSWVNHPEELETFLSLSGYISKKENI 153 Query: 194 LRDINRYLQGE--APVIKAPPPDDETLASRHAQIVARIDTVK---QQWRDAVGELDALIE 248 L ++ L G+ + P + ET + A I A + + +W ++ Sbjct: 154 LIAGSKLLSGKKYPYSNETTPMNAETFRQKTALIAAEMVAREFKTSEWMSY-DQMILQTR 212 Query: 249 SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHP 308 S + + I + + ++ Y++ L E + P+ Sbjct: 213 DSLKNPHLCKALQSRYKVGIIDEFQDTDSVQYEIFSKLFLEPNNETEQKILYLIGDPKQS 272 Query: 309 LFEAIDQLLAEPLSIRDLVITRALAEI 335 ++ + L + + + EI Sbjct: 273 IYGFRGADIGTYLRAKKELKSHKAQEI 299 >UniRef50_A5ZW44 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZW44_9FIRM Length = 1233 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 227/1283 (17%), Positives = 450/1283 (35%), Gaps = 226/1283 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + L ++ RP+ ++ LL++TFT AA E++ RI Sbjct: 19 NILVSAAAGSGKTAVLVQRILSKIMDT------ERPVDIDRLLIMTFTRAAAGEMKERIS 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + I ++ DNP E L + + A + TI GFC ++ Sbjct: 73 AAIDQIL-------YDNPDNEHLQRQAS--------------LIHNAQITTIDGFCAYII 111 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWR-------RHCYPL---------PREI 179 + + E+ L LR + L EI Sbjct: 112 RNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEAAYARKGEKFLSLVECYATGKTDDEI 171 Query: 180 AQVVFETWKG------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 ++++ + P+ + + Q ++ P + + + + ++ + Sbjct: 172 RDMIYKLYDASMSHPFPEEWIEECLEVYQVDSLEDLHDTPWMKLIWDAADESIVQVRELL 231 Query: 234 QQ-------------WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 + + A+ + L+ ++ ++ + + ++ + K +A T Sbjct: 232 SRAAAICREESGPYFYEAALDDDILLLRAAETAVKERDYNGFSELL-KNHKYARLSTKKD 290 Query: 281 QLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPL---SIRDLVITRALAEIRE 337 + +K + L D K F ++++ E L + + ++ Sbjct: 291 LSVDEEKKIQVKDLRDSAKGLWNELTEKYFNQTEEMILEYLQYCRRPMEGLAEVTLQYKD 350 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVL-----AAAIRTRFPVAMIDEFQDTDPQ 392 A KR + L F DM L + G+ + A + R+ M+DE+QD++ Sbjct: 351 AFADRKREQNILDFTDMEHFALDILMHKEGDTITPSAAAWELSARYDEVMVDEYQDSNLV 410 Query: 393 QYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTLDT 445 Q I + + ++GD KQ+IY FR A +M+ L Sbjct: 411 QEMITNLVAGWADKRKNIFMVGDVKQSIYRFRLARPELFMEKYHSYSLEDSEEQRIDLHK 470 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS +++SVN LF Q + I + + + G+ +P ++ L+E Sbjct: 471 NFRSRGTVLSSVNYLFRQIMGEDLG-GITYEDENALYTGASFPERADGK-EPETEVLLIE 528 Query: 506 GESCGVGD-----YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 + + + Q A A +I+ + E L + R DI +L+R+ Sbjct: 529 KDGEELEEQGNQTVQELEALAIAQRIQKLVGIE---EVLDKDSGTYRKAGYGDIVILLRT 585 Query: 561 RQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 A+ L IP VY ++R F E +L L+ P ++ L L ++ Sbjct: 586 SAGWAEPFSQVLASKGIP-VYTASRTGYFAAQEVVTLLNYLRICDNPMQDIPLTGVLHSA 644 Query: 620 MMGLNALDIETLNN---DEHAWDVVV-------------------------EEFDGYRQI 651 + G N ++ + + D ++ ++ E + R + Sbjct: 645 IGGCNTQELAIIRSKCPDGMLYESLLAFRERKTDDRDEEELVLREKISHFIELLEEMRDL 704 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRW 710 V +++ ++ + + GG +R ++ + E ++ T VR+ Sbjct: 705 AVYTPVHELIQYILRKTGYGDYVRVIPGGAQRGANLHMLVEKAMEYEKTSYRGLFNFVRY 764 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQA 766 + + L+ + ++ VQI+TIHKSKGLE+P+V+ + + + Sbjct: 765 IEK--LQKYEVDFGEVNLADAGNGAVQIMTIHKSKGLEFPIVFAAGMGKQFNFQDINSRF 822 Query: 767 FYHDRHSF-------EAVLDLNAAPESV--DLAEAERLAEDLRLLYVALTRSVWHCSL-- 815 H F E L L+ + + + E L E+LR+LYVALTR+ + Sbjct: 823 LIHPDMGFGVDVILPEKRLILSTVHKQIIRRQLKRESLGEELRVLYVALTRAKEKLIITG 882 Query: 816 GVAPL-------------------VRRRGDKKGDTDVHQSALGR------LLQKGEPQDA 850 +A L + RG+ + AL R L ++ D Sbjct: 883 TIAKLADVLQAVSWQMGRRETLLPIGTRGEARNYWSFILPALARHEAMLPLFREYGIADR 942 Query: 851 AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT------ 904 +E A+ + D E K + + Sbjct: 943 QIQVCEMEHAEFKVQKITAAELVQGEILGQTDSQMQEKLLKEWDSRKIYDEEIHEILTER 1002 Query: 905 -----------------SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR 947 S S L++R ++ L + + + ++ R Sbjct: 1003 FAFRYPFEYLKDLPVKVSVSELKKRSWRGEEEKEESLFYEPDIQEIIPTFVSGEKEEY-R 1061 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTE--WITAVLQAPLNET 1005 GA+ GT H L E LD+T D + +++++ + + P + I +L ++ Sbjct: 1062 GAARGTAYHRLMECLDYTHAEDVHQIQKQIRMLTDSRKMSPEEAQCIRIADILAFVDSKL 1121 Query: 1006 GVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 G + + +N E F +IA +++ + ++ + +++G Sbjct: 1122 GQRMKTAAEQNALYREQPF-------VIAQKMNQIEAAWNG-----------EETVLVQG 1163 Query: 1065 FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 ID F + L+DYK++ + Y +Q + Y AL R L+ Sbjct: 1164 IIDAYFIEDDEIVLVDYKTDKVSPGG---------EQDLIDLYHIQLEDYAAALERMLQK 1214 Query: 1125 RIADYDYEHHFGGVIYLF-LRGV 1146 ++ + IY F LR + Sbjct: 1215 KVKE--------TYIYSFTLRKM 1229 >UniRef50_C4Z484 DNA helicase II / ATP-dependent DNA helicase PcrA n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z484_EUBE2 Length = 1220 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 228/1263 (18%), Positives = 437/1263 (34%), Gaps = 226/1263 (17%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + ++ + + ++ L+VVTFT+AA A+++ + Sbjct: 19 DCNVLVSAAAGSGKTAVLVERIISMITD------PDKNIDIDRLVVVTFTKAAAAQMKDK 72 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR + + +NP LL +I ++ A + TI FC Sbjct: 73 IRKALDSMLD-------ENPGDVNLLRQIT--------------LLNNAQITTIDSFCLW 111 Query: 136 MLNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ + E + +++++ + D E +V G Sbjct: 112 IIRNHFPEVNLDPGFRIMDEGEKKLIENDVLEDVLEEFYAEADEEFFNLVDAFGMGRDD- 170 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHA----------QIVARIDTVKQQWRDAVGEL 243 + + ++ P DE I D++K D + Sbjct: 171 -SGLVSIIDKIYRFSRSNPWIDEWFDECMLVYDDETYDNPAIKELYDSIKNALLDYRDKY 229 Query: 244 DALI----ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL----PESLEKFSQRFLE 295 + L+ E +G + I+++ + ++ E+L + + Sbjct: 230 NRLVDICSEPAGPAAYTGALQSDLLGINEMINSQDFGELGRRIRIFSFEALSRKKDAGAD 289 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI----------TRALAEIRETVARE--- 342 K + R + I +L + D I R L ++ + A+ Sbjct: 290 PDIKEYVKGQRKLFKDYIGRLNDKIFLKDDEGIFADMQGAGIQIRTLLKVAKVYAKRVSE 349 Query: 343 -KRRRGELGFDDMLSRLDSAL-RSESGEVL----AAAIRTRFPVAMIDEFQDTDPQQYRI 396 KR +G + F+DM S L + E G+++ A + RF +IDE+QD++ Q I Sbjct: 350 VKREKGIIDFNDMEHLALSILVKKEDGKLVYTETADKLANRFEEILIDEYQDSNQLQEVI 409 Query: 397 FRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-----HYTLDTNWR 448 + + ++GD KQ+IY FR A +++ L N+R Sbjct: 410 LNAVSKTRLSGENNNIYMVGDVKQSIYKFRLACPELFIEKYDTYGETGDNVRIELQKNFR 469 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPV----KSAGKNQALRFVFKGETQPAMKMWLM 504 S ++ N +FS + F I + + + E + + L+ Sbjct: 470 SRENVLECANDVFSHIMNKN-FSGIGYDESVRLNAGFPYPEYSDSNYGDEANKSTDVILI 528 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 E+ + A A I + +G + + RP DI +L RS Sbjct: 529 SSENEEEATTRELEADRLAKLIEGIVSSGVN--VYDADENIYRPAEYRDIVILTRSVTGW 586 Query: 565 AQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A DAL IP+ Y + F E Q +L +L V P +E +L +A+ + G Sbjct: 587 ADTFADALMDRGIPA-YTDSSTGYFSVREIQVILSMLTIVDNPVQEISLAAAMMSYFGGF 645 Query: 624 NALDI----------ETLNNDEHAWDVV---------------------------VEEFD 646 A ++ N + ++ + + + Sbjct: 646 TAAELGMVRKLGREHADKNTHNNLYEHLKAVAVLGGAGKMQESDVKQLSGKCALFLAKLT 705 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEH 705 YR + + ++ + + G +R ++ + E G + Sbjct: 706 EYRDKSSVESLYDLCWEMIYDSGYYDYVGTMPAGAQRQANLNVLLERAAGYGKSSYSGLF 765 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRV 762 +R++ + + + D + + L+ +++LV+I++IHKSKGLE+P+V L NF Sbjct: 766 NFLRYIER-LKKFDEDFAEGAASLD-NENLVRIMSIHKSKGLEFPIVILAGAHKSINFMD 823 Query: 763 QEQAFYHDRHSFEAV--LDLNAAPESVDLAE--------AERLAEDLRLLYVALTRSVWH 812 D++ AV +DL ++ + + E +AE+ RLLYVA+TR+ Sbjct: 824 ATAPVLVDQNLGIAVDYVDLERRTKTPTIIKGAMARRIVRESIAEEERLLYVAMTRAREK 883 Query: 813 CSL-GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI-----A 866 + GV + DK +A G +L + ++ I +C D + Sbjct: 884 LIITGVVKDADKTLDKYMGRAEQLAADG-MLSFADSENIKNYLDMIMPVCLMDSDKLKGS 942 Query: 867 WQTAQTGDNQPWQVNDVS---TAELNAKTLQRLPGDNWRVTSYSGL------------QQ 911 ++ W + E NA + L +N SY L + Sbjct: 943 FKVMVDAGEDSWVDAFEAGEMAGEANAVRIGELADENMEAVSYPLLDELPEYVPDDNAAR 1002 Query: 912 RGHGIAQDLMPRLDVDAAGVASVVEEPTLT-------------PHQFPRGASP------- 951 R L D + + ++E T +F G Sbjct: 1003 RMKLTVSQLKAMQADDDSEENAYMDESVKTALKKEACDETNSIIPKFISGEEVQLAANER 1062 Query: 952 GTFLHSLFEDLDFTQPVDPNWVR----EKLELGGFESQWEPVLTEW-ITAVLQAPLNETG 1006 G+ H + E LD++ V+ + V+ LE G + W I +Q+ +TG Sbjct: 1063 GSAYHRVMECLDYSVSVNLDGVKADINRMLETGKMNELQVKSVNPWDINTFVQS---DTG 1119 Query: 1007 VSLS-QLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 ++ ++ + + E F L ++G Sbjct: 1120 RRVANAVNCGSVRREQPFVFEYEGQL------------------------------IQGI 1149 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL F +G + L+DYK++ + + + RY +Q Y AL + + Sbjct: 1150 IDLYFEEDGEFVLVDYKTDRVMKGEAG-------EKELVRRYAIQLDYYAKALTQLTGKK 1202 Query: 1126 IAD 1128 + + Sbjct: 1203 VKE 1205 >UniRef50_UPI0001C4301D ATP-dependent nuclease subunit A n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4301D Length = 1135 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 218/1192 (18%), Positives = 431/1192 (36%), Gaps = 220/1192 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 Q +I A AG+GKT + + LL + T+EE+ +TFTE A E++ R Sbjct: 15 QSLVVIAAGAGSGKTRVLTERIMYLLEKAFHEPSSSIAATIEEVAAITFTEKAAREMKDR 74 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 +R I E + E A+AA W + ++ A + T H FCQ+ Sbjct: 75 VRKRISEKEVLAQTE-----------------AEAAFWREQ-KELVERAHISTFHSFCQQ 116 Query: 136 MLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 +L A + + + ++I++ Q D ++H + + F ++ + Sbjct: 117 LLGQYAMAAKLPPKIRIIDEVEA--KQLKRDVLKKHLQDVEFTASAKEFFSYMSKDQFIS 174 Query: 196 -------DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIE 248 I+ + GE V++ DD + A +I TV+ + A+ + Sbjct: 175 TMEDIHASISELVIGEDAVLQLQA-DDMLHSQAEAVKEKQIKTVEAFHKAALDLIPQFPS 233 Query: 249 SSGIDRRKF-----------------NRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 + G+ + + + W+ + ++ +P + F + Sbjct: 234 AEGLTKAQAGHVDRLQEAFLSPPSPSGPNEYMDWLIGVMPKRTDKKWQEAIPALFQLFEE 293 Query: 292 RF--LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEL 349 + L+D KA G + E S+ L + REK RG + Sbjct: 294 HWKPLKDDWKAVGGEVE----------IDEAASLLLGRFIDLLCDFHLAYKREKELRGVV 343 Query: 350 GFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL 409 F D+ + S L ++ + A + +F ++DEFQDT+ Q + RI + Sbjct: 344 DFSDLQQKAVSLLENKE---IQEACQKQFRHMLVDEFQDTNRLQLEMLERI----NPSYR 396 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTLDTNWRSAPGMVNSVNKLFSQT 464 ++GD KQ+IY FRGA++ + + ++ N+R+ +++ VN LF Sbjct: 397 FIVGDTKQSIYRFRGANVRLMNELEQDAVEQENAEAIEMNINYRTCKPIIDGVNALFQSA 456 Query: 465 DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAA 524 + ++ + + Q M++ L+ E D ++ + A Sbjct: 457 MTDHITE-----SYQTRYAALSANREAEQPDQKQMELLLLNKEE---TDEEAGSYEALAH 508 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 +I + + + Q + G+ + D++VL+ +R + ++ A + IP + Sbjct: 509 RINEMITSQQ---PRVFKGESWQAPAFKDMAVLIPARTDLLKLERAFSKQNIPY-TVYGG 564 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 +E E + L LL+ + P + + S L + ++GL D T+ + A + Sbjct: 565 IGFYERQEIIDFLTLLRWMNRPFEDVYVLSLLRSPLIGLTMNDFVTIAKQKEATQSFADY 624 Query: 645 FDGYRQIWRKRGVM----------------------------------PMLRALMSARNI 670 + + G+ ++ + Sbjct: 625 LYQLSESMPQTGLADSSDLPAQQILDAALKLKEWLLNYVPFSIKGSPGETFDRMIKETGL 684 Query: 671 AENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLE 730 +LL + G +++ ++ + +++++ + L S ++ ++ + + D ++ R E Sbjct: 685 VHSLLIQSNGLQKVKNVEKLIQMIEQ--SHLRSLEEIIHFIDERMALNDKEGEAEMERTE 742 Query: 731 SDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV--- 787 D V I+TIH SKGLE+P+V+LP + ++ V L +++ Sbjct: 743 GD--AVNIMTIHASKGLEFPIVYLPQLERSVQGDKGSVRFDAKLGIVWSLEEETDNLEAR 800 Query: 788 -------------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 + A E E RL YVA TR+ + + + G KK + Sbjct: 801 PKKLVTPGFELVKEAAGLESEEESKRLFYVAATRAKDYLVM----IGNGDGAKKSWLHLI 856 Query: 835 QSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL------ 888 + E +D L I + +I+ Q +N ++ +++ + Sbjct: 857 E----------EARDCGPLEDYITVVN--EISEQLPHHAENHLYKGTELAAKKEVLYPLS 904 Query: 889 --NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP 946 T P + + ++ G+ + R D DA V + Sbjct: 905 VSEIMTFIHQPEEYY--------EKYVLGVNESRRLRSDADADQETRVQQVDP------- 949 Query: 947 RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG 1006 A GT +H EL + + +TE + V LN+T Sbjct: 950 --AVVGTLVH------------------RACELRDYGFGAQEAVTEAMNYV--DELNDTA 987 Query: 1007 VSLSQLSARNKQVE-MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 ++S + E ME Y +Q L + + + +V G Sbjct: 988 S--VKVSYEQEVSELMETY-------SEAQQTELGTPVENEWSFATEIAGAEVI----GE 1034 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 ID V +G +++D+K+N + S + YD+Q LY +A Sbjct: 1035 IDKVVERDGCLHIIDFKTNRIKRSGSEWLAV----------YDVQLYLYKMA 1076 >UniRef50_C4G8V9 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G8V9_9FIRM Length = 1315 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 236/1293 (18%), Positives = 449/1293 (34%), Gaps = 228/1293 (17%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + +R+L PL V++LLVVTFT AA E++ +IR Sbjct: 22 LVSAAAGSGKTAVLVERIIRMLTDPDA------PLDVDQLLVVTFTRAAAHEMKEKIRRA 75 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I E + L+ D + L + A + TI FC ++ Sbjct: 76 IQEAVNEARSQ----------LDPTDRQKALLSHLQRQLTLVHSAQITTIDSFCAYVVRN 125 Query: 140 NAFESGMLFEQQLIEDESLLR--YQACADFWRRHCYPLPREIAQVV-FETWKGPQALLRD 196 + E + + ++ E+ + + H + +V +G L D Sbjct: 126 HFNEIDLEPDFRIAEEGEIRLIAQEVMDQLMDEHYEMEDQAFIDLVDLYARRGKDDALAD 185 Query: 197 INRYLQGEAPVIKAPPPDDETLASRH-------AQIVARIDTVKQQWRDAVGELDALIES 249 + + G A P + + + + + + + + + L+E Sbjct: 186 MLMSIYGTANADPWPMEWLDRCSDTYRVKSPEDMLRMPWVQGLTNRIKSQAEACEDLLEE 245 Query: 250 SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL--------PESLEKFS--QRFLEDRTK 299 + R + + I+ A+ E + +K S ++ +++ K Sbjct: 246 AMQLSRLPGGPHYQEAIEADLAYCESIREAEDFSRIALILSGIQWKKLSGKRKGVDEELK 305 Query: 300 AGGETPRHPLFEAIDQLLAEP----------LSIRDLVITRAL---AEIRETVAREKRRR 346 A + R + +QL + LS+ + L E + KR++ Sbjct: 306 ARAKDLRDQSKKVFEQLRRDYSGDPAAEFDKLSVMAPYLKTLLDLTKEYAVSFEACKRKK 365 Query: 347 GELGFDDMLSRLDSALRSESGEV-----LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 + F D+ LR + A + ++ MIDE+QD++ Q I + Sbjct: 366 NVVDFADLEHYALRILRDPADPAHPMTETAENLCRQYAEVMIDEYQDSNNLQEAILSAVA 425 Query: 402 H-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------------HYTLDTNWR 448 Q E ++GD KQ+IY+FR A + L N+R Sbjct: 426 GSDQGEHKTFMVGDVKQSIYSFRQARPELFNSKLKSYDKLTAESQKTVRSQRIDLSRNFR 485 Query: 449 SAPGMVNSVNKLFSQTDDAFM----FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 S +++ N +F + + + E + + + A K E + ++ L Sbjct: 486 SRQEILDFANHIFYRVMQEDLGGVAYHEDVALHLGADYPATAAAVSGKAEDPYSAELILC 545 Query: 505 EG-----ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD--ARPVRASDISVL 557 E E+ G+ D A + +I+ ++ + GD R +R DI +L Sbjct: 546 EQDMEALEALGLEDKAELEANMIGERIQRLMKEQKVVNEEAEEGDQNPLRRLRYQDIVIL 605 Query: 558 VRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 +RS D LT + IP+ ++++ F+T+E L LL + + + +L + + Sbjct: 606 LRSPGSNGQVFVDRLTQMGIPA-HITSGKGYFDTVEVSRFLALLSLLNNRQDDRSLAAVM 664 Query: 617 ATSMMG--LNALDIETLN-------------------NDEHAWDVV-------------- 641 + + G + + + W+ + Sbjct: 665 LSHVFGEPFTEDQLYLIRSAYPRLTTGQDRGDESRDIQNACLWESLEAMESYSRGILAGE 724 Query: 642 ---------------------VEEFDGYRQIWRKRGVMPMLRAL----MSARNIAENLLA 676 V +F + R R + L + + A Sbjct: 725 KEDSDQRPGHLLELDTSLPQKVLDFCDRLEAARARIPYTPIHRLIEELLDETAYLNYVTA 784 Query: 677 TAGGERRLTDILHI-SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GG+ R ++L + E ++ G+ + + ++ Q + + + S+ ++ E D Sbjct: 785 LPGGQIRRANLLKLVDEAIRFEGSSYRGLYRFMNYI-QKLRTYNVDLSAAELIGEED-DA 842 Query: 736 VQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEAVLDLNAAPESV----- 787 V+I +IHKSKGL+YP+V++ + N R + ++ NAA ++ Sbjct: 843 VRITSIHKSKGLQYPVVFVCGLGQKFNMRDSSGDMLIEMDLGISLRTRNAAKRTMSDSLF 902 Query: 788 -----DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL 842 D + LAE++R+LYVALTR+ L + + + G +L Sbjct: 903 HRAVSDQRKENSLAEEMRVLYVALTRAKEKLILSGSLSRLKERLDQEWEATRGKGDGYVL 962 Query: 843 QKGEPQDAAGLRTCI------------------EALCDDDIAWQTAQ-----------TG 873 A I D + W Q T Sbjct: 963 PYHRRMGAKNYLDWILPSLASYGELYRQSIHCYIPGEDGALTWGQEQAESPGRADCDGTP 1022 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNW---------RVTSYSGLQQR------GHGIAQ 918 N + D+ E + L+R+ + S S ++ G Q Sbjct: 1023 ANHLEDLKDLPGTEALLQYLRRVFAYRYPYAASQNYKSKYSVSEIKHASMQLGMGEKEGQ 1082 Query: 919 DLMPRLDVDA---AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE 975 ++ +D D +V EE + GA GT +H + E LDF + + + E Sbjct: 1083 EIFRPVDEDRYVPEFARAVTEERGQNNKKIHPGALRGTAMHRVMECLDFAREDYADSLGE 1142 Query: 976 KLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEP 1030 +L+ E + VL + I + L+ + + E F + Sbjct: 1143 QLDQMRADGRLSEEELGLVLPDRIQSFLKQDMADRIHR--SAVEGRLYREQPFVM----G 1196 Query: 1031 LIASQLDTLIRQFDPLSAGCPPLEFMQVRG---MLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 L ++D L+ + ++ + V +++G IDL F +G+ +LLDYK++ + Sbjct: 1197 LRPKEIDRLMGRQPSAASKESETDAAAVGENMILVQGIIDLFFIEDGKIFLLDYKTDRVQ 1256 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 ++S RY Q LY A+ R Sbjct: 1257 DESE-----------LVGRYQAQLLLYAQAVLR 1278 >UniRef50_B1MZM2 ATP-dependent helicase/nuclease subunit A n=3 Tax=Leuconostoc RepID=ADDA_LEUCK Length = 1236 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 229/1277 (17%), Positives = 436/1277 (34%), Gaps = 239/1277 (18%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR- 75 L+ ASAG+GKT + ++ +L ++VE L+VTFT AA E+R R Sbjct: 18 HNILVAASAGSGKTTVLIERLIQKILS---------GISVENFLIVTFTNAAAKEMRERL 68 Query: 76 ---IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGF 132 I + + ++L + A + TI + Sbjct: 69 EIAIEKRLRDANDG-----------------------MKRFLQEQLLLLPAANISTIDAY 105 Query: 133 CQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYP---------------- 174 R++ G+ + +L+ D E + Q D Y Sbjct: 106 ALRLIENYYHVIGLDPQFRLLSDTAERDMMRQDVLDTVFEAFYDETHPQHENFIALVNNF 165 Query: 175 ----LPREIAQVVF------ETWKGPQALLRDINR--------------YLQGEAPVIKA 210 + Q V E Q L+++++ Y P++ A Sbjct: 166 GNPNQDDALRQAVLKLSDFAEARPDGQQWLKELDKNDLATANGLTQSQTYRLTILPMMIA 225 Query: 211 PPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI---ESSGIDRRKFNRSNQAKWID 267 +A ++ + +K+ + A E+ A + + + +D + + Sbjct: 226 RLEQLLEIAQATQTNLSGVPELKKT-QQAFDEIIAYLVNVQQALVDDDWDTLRGKLSQLP 284 Query: 268 KISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAI-------DQLLAEP 320 K+S + PE L +Q G ++ + + Q + + Sbjct: 285 KVSLETKRSKGIKDEPELLALLAQATTVKNNILGAKSDLKNVIDTFFKFDQNDWQYVEKQ 344 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPV 380 + + + KR + F D+ + L + + +F Sbjct: 345 ATELVNTLVTLTQACQSAFTTAKRDAQLVDFPDLGALALEILNDDMT---RKTVSGQFQE 401 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--- 437 ++DE+QD + Q + ++ + + ++GD KQ+IY FR A+ + + + Sbjct: 402 ILVDEYQDINQLQETLLTKVSNGH---NMYMVGDVKQSIYGFRQAEPTLFARKYRQFALP 458 Query: 438 ---HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----EIPFIPVKSAGKNQALRF 489 + L N+RS + N +F+Q D + E +P + + F Sbjct: 459 DNPDSRIELADNFRSQNNVTRVTNLIFTQLMDEKLGDIAYTGEAKLVPKANYPTDVTPVF 518 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 QP + E ES Q+ AQ+ A QI G RPV Sbjct: 519 NMTIIKQPNVTTSEDEDESQEFEKRQAQYAQL-ANQILSLRDTTIFDRKAEPAG--MRPV 575 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 + DI++L RS+ + L IP+ + + + F+T+E ML +L+ + P ++ Sbjct: 576 QYGDIAILTRSKTGYIDLVATLRQAGIPT-QVDSVGNYFQTMEVYLMLDVLRVIDNPHQD 634 Query: 610 NTLRSALATSMMGLNALDIE--TLNNDEHAW--------------DVVVEEFDGYRQIWR 653 L + L + M G + D+ L + +H + V++ + Q+ Sbjct: 635 IPLAAILRSPMFGYSENDLAAVRLADKKHDYWSALTVFAQADQRSQTVIDLIKKWHQLAI 694 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 + ++ ++ A+ + + + GG +R ++ + + + Q + L R++ Sbjct: 695 QNDLVALIWAIFDDTSWLDYVAGMPGGAQRQANLHALYDYAR--TYQENTHAGLFRFIRY 752 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP-FITNFRVQE-------- 764 +++ + E+++ V+I+TIH SKGLE+P+V+LP F +F Q+ Sbjct: 753 IEQLQENDGQLGEAPQEANEQAVRIMTIHASKGLEFPIVFLPEFDKSFNTQDLSGKMLIQ 812 Query: 765 ----QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS------ 814 + + + + + +E++RLLYVALTR+ Sbjct: 813 KNAGIGLEYLQPEALVAMPTLKKLTVQQALKRQSWSEEMRLLYVALTRAEQQIYVVGTVK 872 Query: 815 ----------LGVAPLVRRRGDKKGDTDVHQSA---LGRLLQKGEPQDAAGLRTCI---- 857 + + + + D+ SA LL L + + Sbjct: 873 LDENEENQRLIALWQRAKETSGQFLAEDLRLSAKSYFDWLLISLARTKNDDLESWLGDGH 932 Query: 858 -------EALCDDDIAWQTAQTGDNQPWQVNDVSTAEL------NAKTLQR--------- 895 E D I+ + D + T E+ A+ R Sbjct: 933 LPHVLGPETTLDSQISVRFINESDVVIPEPQGNETKEITRASTYQAEDFARAKAILDYQY 992 Query: 896 LPGDNWRVTSY---SGLQQRGHGIAQDLMPRLDVDAAGVASVVEE--------PTL--TP 942 R +Y S +++ + + L+V G E PT Sbjct: 993 PFQQATRTAAYQSVSEMKRLFEDPDRANLKTLNVLENGQLQPANELVSDKLVLPTFMTDG 1052 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDPN---WVREKLELGGFESQWEPVL--TEWITAV 997 Q P A+ GT H + + LDF Q +R+ L G + L + I Sbjct: 1053 SQKPSSAAVGTATHLMLQLLDFKQIQTHQSLTALRDDLVTQGRLTAPVAALIDIDQILNF 1112 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEF--YLPISEPLIASQLDTLIRQFDPLSAGCPPLEF 1055 LQ P + L L A + + E F +P ++ ++ + L Sbjct: 1113 LQTPFAQ---RLC-LHADSLRREATFAMIMPANQI------------YEHVHDQASVL-- 1154 Query: 1056 MQVRGMLKG-FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 V G++ G FID + L DYK++++ ++ ++ M RY Q LY Sbjct: 1155 --VHGIIDGYFID---KKTKSITLFDYKTDFVRHGR---VEEDISKMMV--RYRGQLTLY 1204 Query: 1115 TLALHRYLRHRIADYDY 1131 A L DY + Sbjct: 1205 KQA----LMQEFPDYTF 1217 >UniRef50_C9KJP8 ATP-dependent nuclease subunit A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJP8_9FIRM Length = 1283 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 241/1319 (18%), Positives = 439/1319 (33%), Gaps = 289/1319 (21%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + LL R +V+E+LVVTFT AA E+R R Sbjct: 15 HRNILVAAAAGSGKTRVLVDRIIAQLLA--------RECSVDEMLVVTFTNAAATEMRER 66 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I D L ++LLE D + A WL + A++ T H FCQ+ Sbjct: 67 I----------------DKALQKKLLE--TDDRETAAWLERQIVLLSGASICTFHAFCQK 108 Query: 136 MLNLNAFESGMLFEQQLIEDESLLRY-----------------------------QACAD 166 ++ N + + +L D+ ++ + D Sbjct: 109 VIRQNIDAIDVDPQFRLASDQEMVLMRRDVLEELLESSYKMPEDEAGKAKWQDFLEFVDD 168 Query: 167 FWRRHCYPLPREIAQVVF---ETWKGPQALLRDINRYLQGEAPVI----------KAPPP 213 + H E ++ ++ P+A LR + EA +A Sbjct: 169 YGDDHGDEAVYEAVLKLYHFCQSQPFPKAWLRQQQERYEAEAADFWQTPWTATIVEAVGR 228 Query: 214 DDETLASRHAQIVARIDT-------------VKQQWRDAVGELDALIESSGIDRRKFNRS 260 + E + A + T Q + + + +E R Sbjct: 229 EIERSIHAYEAACALVRTGGRPEAEEAALLAAWQPYVEYLQSCIEKLEEVQTVYRTALAE 288 Query: 261 NQAKWIDKISAWAEEETNSYQLPESLEKFSQRF--LEDRTKAGGETPRHPLFEAIDQLLA 318 +A D + A A+ + E F + + + + +A D+ LA Sbjct: 289 KKAGGWDALCAAAKGWKQPVLRGKKYEALRDAFPDIRKAFEKSRDEAKKIFTDARDRYLA 348 Query: 319 EPLSIRDLVITRALAEIR----------ETVAREKRRRGELGFDDMLSRLDSAL------ 362 E + I A +R + + K+ R L F D+ + L Sbjct: 349 EMEASVLEDIRACSATVRRYVDLTTAFIDALQAAKKERNVLDFSDLEHFALAVLCRDSEA 408 Query: 363 ---------RSESGEVL----AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL 409 R E G+ L A +R ++ V M+DE+QDT+ Q I I Sbjct: 409 LAGASEADFRGERGKALRTDAAEDLREKYAVIMVDEYQDTNGVQEAILNLIARADNR--- 465 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAH---------YTLDTNWRSAPGMVNSVNKL 460 +GD KQ+IY FR AD + + + T+ N+RS ++ +N + Sbjct: 466 FTVGDVKQSIYRFRLADPYLFQAKYDAYPENPGAEDMDQLITMKQNFRSRAEVLAPINFI 525 Query: 461 FSQT-----------DDAFMFREIPFIPVKSAGKNQ-ALRFVFKGETQPAMKMWLMEGES 508 F Q + + ++ + + K L + +GE + ++ ++ Sbjct: 526 FDQVMTREAMEIEYDEKSRLYPGASYPEAEHTLKGPMELDIILRGEPEQPVEGLSQAADA 585 Query: 509 CGVGDYQSTM-----AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 + AQ A +I +++G R + RP+ DI+VL+R+ + Sbjct: 586 GDETGGEELEGFELEAQHIADRIAGLMESGYR--VFDKDAGGYRPLAYRDIAVLLRAVKG 643 Query: 564 -AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 A + + L IP+ + FE E + +L LL+ + +E L + L + + G Sbjct: 644 KANTLLELLRKNSIPAYADVDG-GYFEANEVRLVLALLKTIDNARQEIPLAAVLVSPIGG 702 Query: 623 LNALDIETLN---NDEHAWDVVVE---------------------EFDGYRQIWRKRGVM 658 ++ L DE + ++ + +R V Sbjct: 703 FTMEELARLRMSVPDEDLFGALLRSHSPETPLEEGLADRAADFCASLNRWRSYAVSHSVP 762 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILE 717 ++ L + + GG R ++ +++ E T +R+L L Sbjct: 763 ELIWKLYRETGYYDYVGGLKGGLLRQANLRMLADRAAEYEKTNYRGLFRFLRFLED--LR 820 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAV 777 S L + + +V+I++IHKSKGLE+P+V + I Q A R +F Sbjct: 821 KRDTDLSVARTLGASEDVVRIMSIHKSKGLEFPVVIVADIAKGFNQLDA----RGTFLLH 876 Query: 778 LDLNAAPESVDLAE-------------------AERLAEDLRLLYVALTRSVWHCSLG-- 816 +L P V+ + AE AE++R+LYVA+TR+ L Sbjct: 877 KELGIGPRLVERSTVGRQMYDTLPYQAIGARIVAETKAEEMRVLYVAMTRAREKLILTGT 936 Query: 817 --VAPLVRRRGDKKGDTDVHQSAL---------GRL---------------LQKGEPQDA 850 A ++ D + AL L +++ D Sbjct: 937 LAAAKWEKQAARYARSLDSRELALPDDMIREADSYLDWIAPAVARHTDGAPIREAAGVDW 996 Query: 851 AGLRTCIEALCDDDIAWQTAQTGDN--QPWQVNDVSTAELNAKTLQRLPGDNW--RVTSY 906 + +E + +A+ + +++ + + L P + S+ Sbjct: 997 GEMLDAVEPAAHFAVNLLSAEAIQPREEQEELDATLQSVREGRALPASPERELVEKRLSW 1056 Query: 907 ----------------SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG-- 948 S ++QR ++ P A V P +G Sbjct: 1057 HYDAEELPGITAKMTVSEIKQRFAESLREDEPAALPVAPAAPPVWRRPQFLQQ---KGRL 1113 Query: 949 --ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG 1006 A GT +HS+ ++LD + +R ++ + + + Sbjct: 1114 SPAERGTLMHSILQNLDLHGDLTREGLRAQVARMEVTGMIAAGHEDAVNYT-----SIES 1168 Query: 1007 VSLSQLSARNKQ-----VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 S L R +Q E+ F + P+ P + Sbjct: 1169 FCQSSLGQRMQQAVRVWRELPF-----------------SRMIPVGEVNPTYAGSSEKIF 1211 Query: 1062 LKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 ++G ID++F +G LLDYK++ T + + Y Q +LY A+ Sbjct: 1212 VQGVIDVLFEEADGSLILLDYKTDR------DTTPEKIRR-----HYAKQIELYREAVE 1259 >UniRef50_Q0AXU8 ATP-dependent helicase/nuclease subunit A n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=ADDA_SYNWW Length = 1236 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 227/1298 (17%), Positives = 441/1298 (33%), Gaps = 265/1298 (20%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++L+L + ++ LL+VTFT+AA E+R RI Sbjct: 18 NLLVAAAAGSGKTTVLVERIIQLVLRD--------RIDIDRLLIVTFTQAAAGEMRERI- 68 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + ++ L + +D L ++ +++ TIH FC ++ Sbjct: 69 ---------------NAAFFKELEKGREDGH-----LRRQLYLLNRSSISTIHAFCSDVV 108 Query: 138 NLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQ---- 191 + + ++ + + L++ + + +V Sbjct: 109 RQHFHLVNIDPHFRIADSTETELIKMEVLEELLDGEYEKGNDGFLDLVEAFGSNKDDKPL 168 Query: 192 -ALLRDINRYLQGEAPVIKAPPPDDETLA---------SRHAQIVARIDTVKQQWRDAVG 241 AL+ ++ ++Q + + LA +++ +I +D + Sbjct: 169 EALILRLHSFIQSHPQPLSWLEEKIDNLALGEDNWAENPWASELSQQIKIELSAAQDILN 228 Query: 242 ELDALIESSGIDRRKFNR-SNQAKWIDKISAWAEE------------------------E 276 + L +G R + KW++ + A++ + Sbjct: 229 QALKLSNKAGGPRGYLEAIESDQKWVELLLKAADQGLPVLYSCLQQLSFTRLGRVSRDVD 288 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR 336 N + L S++ L G P L + L E S+ + + Sbjct: 289 ENLKNQVKILRDESKKILNAINSLLGRDPLEYLQD-----LNEIYSLMK-YLGEIIQSFA 342 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 E +KR +G + F+D+ L S E +A R + IDE+QD++ Q I Sbjct: 343 EIYQEKKREKGIVDFNDLEHLALQIL---SNEAVAREYRDYYSYLFIDEYQDSNLVQETI 399 Query: 397 FRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------AHYTLDTNWRS 449 I + E L ++GD KQ+IY FR AD +++ + L+ N+RS Sbjct: 400 LNYI---KKEDNLFMVGDVKQSIYRFRLADPSLFLEKQKSYPLQDGSVNRRVDLNKNFRS 456 Query: 450 APGMVNSVNKLFSQTDDAFM----FREIPF----------IPVKSAGKNQALRFVFKGET 495 P ++N+VN +F + + E + + + K + K T Sbjct: 457 HPEILNAVNYIFRHLMSEELGEIDYDEKSYLYPGLNTGQELKYQEIDKASSQEGKEKENT 516 Query: 496 QPAMKMWLMEGESCGVG---------------------------DYQSTMAQVCAAQIRD 528 +++ ++E + D A + A +IR Sbjct: 517 AKRVEICILENNPDLITKLEENETEEREIPGEAENDFIERIIEMDNTEIEALLIAQKIRQ 576 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSV 587 +Q + R + D+ +L+R +R A + L+ IP VY Sbjct: 577 LIQE----DIYDPELQCMRKIEYRDMVILLRATRNSAGIFMEQLSAEGIP-VYADASSGY 631 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN--------------- 632 F+TLE + LL+ + ++ L S + + + G + D + Sbjct: 632 FDTLELNLFINLLRLIDNKRQDIALLSVMRSPIGGFSIDDFIKIRTKLIPRREKQPYSFY 691 Query: 633 ---------NDEHAWDVV---VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG 680 N++ D + ++ + R + + L A GG Sbjct: 692 EAMEFYMEDNNDDLKDRLVFFIQRLKEWELESRIMALDEFMGKLFMDTGYYYYAGAMPGG 751 Query: 681 ERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 +R ++ + +E + + + ++++ + ++ + + + ++V+I+ Sbjct: 752 GQRQANLRILLHRAREFQKSSFKGLFSFIKYIEK--IKSSGSDMGNACIIGENDNVVRIM 809 Query: 740 TIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVL---------DLNAAPES 786 +IHKSKGLE+P+V L + E H + D A Sbjct: 810 SIHKSKGLEFPVVILGGLGKNFNIRDSNENVLLHRKLGIGPRYINTQLRTYHDTIARLAI 869 Query: 787 VDLAEAERLAEDLRLLYVALTRSVWHCS-------LGVAPLVRRRGDKKGDTDVHQSALG 839 + + E LAE++R+LYVA TR L A + + +S L Sbjct: 870 KNRIKLENLAEEMRILYVACTRPQEKLIMVGTTRQLESAWRRWSQPVNSYNQSRARSFLD 929 Query: 840 RLLQ--KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP 897 L+ ++ LR D +I W+ D W+V +S +L A+ +++ Sbjct: 930 WLIPIIMRHKKEGQYLREIAGGDWDREILWE-----DESRWKVKLISPWQLTAEEIRKKE 984 Query: 898 G-DNWRV----TSYSGLQQRGHGIAQDL---MPRLDVDAAGV-----------ASVVEEP 938 W YS I + L P + + + +E+ Sbjct: 985 EKYEWERLLEQGGYSCPSAESEEIIKRLNWKYPYQEAENIPAKLSVSQVSQISSGYLEDG 1044 Query: 939 TLTPH-----QFPRG----------ASPGTFLHSLFEDLDFTQPVDPNWVREKL----EL 979 F G A G+ +H + +++D+ + + + ++L E Sbjct: 1045 AADTFLTRVPAFLSGEKDKKTRLSPADKGSIVHLVMQNIDYRRVSREDSINQQLGEMVER 1104 Query: 980 GGFESQWEPVLT-EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDT 1038 S+ V+ I Q L + L A+ E F L I+ Sbjct: 1105 EILTSEQLAVVEVNKIWRFFQTKLGQRV-----LQAKWLFREAPFNLLIA---------- 1149 Query: 1039 LIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAM 1098 ++ P Q +++G IDL F LLD+KS+ + Sbjct: 1150 --------ASEVFPALESQEELLIQGIIDLYFYEGEDIVLLDFKSDIV---------HHK 1192 Query: 1099 AAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 + Y +Q +LY AL HR+ + Y Y Sbjct: 1193 SEEEILAPYRVQLKLYKRALENITDHRVKESYLYFFDL 1230 >UniRef50_C0EV13 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EV13_9FIRM Length = 1221 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 215/1267 (16%), Positives = 435/1267 (34%), Gaps = 233/1267 (18%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AG GKT + + L++ P+ + LV+TFT AA AE++ RI ++ Sbjct: 20 VSAGAGAGKTRVLVSRMAELIMDEKN------PVEADRFLVMTFTNAAAAEMKERISLDL 73 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 E RL ++ ++ +L R++ +A + T+H FC ++ + Sbjct: 74 EE----------------RLAKDPEN-----HYLRKQIRKIRQADISTVHSFCNHLIRTH 112 Query: 141 AFESGMLFEQQLIEDESL-LRYQACADFWRRHCYPLPREIAQVVFETW---KGPQALLRD 196 E + ++ E+ L L Q + Y RE E++ K + L Sbjct: 113 YNELSIDPSFRIGEEGELFLLRQQAIEQLLEEAYASGRESFVKFAESYAPGKSDKVLEEL 172 Query: 197 INRYLQGEAPVIKAPPPDDETLASRHAQIVAR-----------IDTVKQQWRDAVGELDA 245 + + A ++T A+ K++ L Sbjct: 173 VGDLYRFSRSFPNASFWFEKTKQEALQLAEAKEWDNSPAVMLIFLKAKKELLQEKEALSK 232 Query: 246 LIESSG----IDRRKFNRSNQAKWIDKISAWA-----------------------EEETN 278 L+++ ++ + +++++ +S ++E Sbjct: 233 LLKNIAGEEVPEKYGVLLQDVSEYVEALSQTESYDAYYMVLSRGPVPAFPRATKKDKEWA 292 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRET 338 Y++ + + + L+ + + P L + PL +V+ + EI Sbjct: 293 DYEIVKEWHQEVKELLQKQKETVFTAPAEELQREAAGIY--PLLEEYIVLAQRFEEIYLA 350 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGE-------VLAAAIRTRFPVAMIDEFQDTDP 391 K+ + FDD+ L E A + ++ + +DE+QDT+ Sbjct: 351 Y---KKEKNVYDFDDLEHFALELLVDHYDEGGQAYPSETAKTLAKKYKMIFVDEYQDTNL 407 Query: 392 QQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLDTN 446 Q I + + L +GD KQ+IY FR A +++ + H L N Sbjct: 408 VQETILEML-SEKDNNTLFTVGDVKQSIYRFRQARPDLFLRRNEKYHNEEEGVSIELRDN 466 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RSAPG++ N +FS+ + F + + + + + ET + Sbjct: 467 FRSAPGVLCFTNYVFSRLMERD-FGGVDYNEETALRAGEGGPMLEDKETSELLFFVKDSV 525 Query: 507 ESCGVG-DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-A 564 ++ + T + +I++ ++ G DI +L+RS Sbjct: 526 QTLEEAPEDVLTETALITKRIQELIEEG---------------YHYGDIVILLRSGAGRM 570 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 + + L IP V N+ F T E +L L V ++ + S + +S+ G Sbjct: 571 EPMAEFLEKNGIP-VSCENKTGYFHTREITIILNYLSVVDNVYQDIPMASVMLSSIGGFT 629 Query: 625 ALDIETLN-----------------------NDEHAWDVVVEEFDG----YRQIWRKRGV 657 ++ L E ++ F +R+ +++ + Sbjct: 630 EEELTKLRILVREPMREQYTLYDLMCLYLQEGAEEELRAKIQHFYKDLQYFREQKKEQPL 689 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHIL 716 +L + ++ G +R ++L + + ++ T + R++ Q L Sbjct: 690 GVLLWDIYQRTGFYYDVQLMPDGAKRKENLLMLLKKAEDYEKTVFKGLFYFNRYMEQ--L 747 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRH 772 + + ++++V+I+TIHKSKGLE+P+V++ ++ + + H Sbjct: 748 KSYEIELGEAGSGTENENVVKIMTIHKSKGLEFPVVFVSGLSKKFNRMDLTKPMLCHPEL 807 Query: 773 SFEAVLDLNA----APESVDLAEAER-----LAEDLRLLYVALTRSVWHCSLG------- 816 P + A E+ L E++R+LYVA+TR+ L Sbjct: 808 GIGMECVNITLRFHHPSLMKRAIQEKVWKDTLEEEMRILYVAMTRAKRKLILTGIIKAQD 867 Query: 817 --VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGD 874 ++ K T L L + + L + + Q G Sbjct: 868 LEAGLRLQINTQKWRATSAMDWLLPILADQFRSTQSEKSEEREGFLKNQETQKQAHSEGV 927 Query: 875 NQPWQVNDVSTAELNAKTLQRLPGDNWRVT-------------------SYSG------- 908 W + E ++ + S+S Sbjct: 928 TASWLKARLVNWEEILPFFEKERKQKEEFSYQIFMDTVVIPADVSMVEQSFSYEYPNRDA 987 Query: 909 --LQQR-----GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-------GASPGTF 954 +++ ++Q +P + E + +F + + GT Sbjct: 988 TKWKRKYSVSELKTLSQTTLPEEESSIMLPEQNNFEEEVKMPEFLKEEKSEIAATARGTI 1047 Query: 955 LHSLFEDLDFTQPVDPNWVREKLE-LGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQL 1012 +H + E L F Q + E ++ L G + E + +W+ ++A L +E G LSQ+ Sbjct: 1048 IHKIMELLPFGQIQTKKQLFEWIDALKGTYPESEKISAKWLYRAIEAFLFSEIGEKLSQM 1107 Query: 1013 SARNKQV-EMEFY--LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLV 1069 + E+ F LP+S +Q + + +++G ID+ Sbjct: 1108 DRQGNLRKELPFTVGLPVSLMNADTQAEDTV--------------------VVQGIIDIC 1147 Query: 1070 FRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD- 1128 E +L+DYK++ + E ++ RY Q Y AL + L R+++ Sbjct: 1148 GEAEESLWLIDYKTDRIKEG---------EESLLLDRYGNQMLYYKAALEQILGKRVSES 1198 Query: 1129 YDYEHHF 1135 Y Y Sbjct: 1199 YLYSFSL 1205 >UniRef50_A6CDV1 UvrD/REP helicase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDV1_9PLAN Length = 1171 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 227/1171 (19%), Positives = 404/1171 (34%), Gaps = 146/1171 (12%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AG GKTF + +L+L+ P + ++ +TFTE A E+R RIR Sbjct: 24 LSAGAGCGKTFVLTQRFLKLI------EPGAPPDRLSHIVAITFTERAAREMRDRIRET- 76 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 CL + + P + R +D A + TIH FC +L + Sbjct: 77 ------CLDQLKNCP------------PEEVNHWQAVIRGLDSARISTIHSFCTSILRSH 118 Query: 141 AFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETW--KGPQALLRD 196 A + + L+E + + + Q+V+ K + L+ Sbjct: 119 AVSARLDPHFGLLEQGTSDTFLRKVVHEAVHELLKQENADCIQMVYRFGLEKTYELLISL 178 Query: 197 INRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI----ESSGI 252 + + + E + P+ R I + ++ L L Sbjct: 179 VPQQFRLEFDEFRELTPEQLAGRMRDFWEQNYIPMQLAEIAESDATLHLLRLMNSHEPSN 238 Query: 253 DRRKFNRSNQAKWIDKISAWAEE----------ETNSYQLPESLEKFSQRFLEDRTKAGG 302 + + I ++ A + + Q + + + + ++ + G Sbjct: 239 PKLRQRFQTLKSRIPELIDGAPQMRGELLGTLIDHAKIQGGGTKKDWDDVSIYEQIRDGF 298 Query: 303 ETPRHPLFEAIDQLLAEPLSIRD-----LVITRALAEIRETVAREKRRRGELGFDDMLSR 357 + R L + L +P LV+ R + K +G L FDD+L + Sbjct: 299 KELRETLKPVYETLSPDPAGFLAAAEFSLVVLRVSEYAAKCYQESKAEKGLLDFDDLLLQ 358 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ-PETALLLIGDPK 416 R + M+DEFQDTDP Q I R + + L L+GD K Sbjct: 359 TRDLFRRDPNA--RQRAAAGIHYLMVDEFQDTDPVQSEIVRALCGKELLTGKLFLVGDAK 416 Query: 417 QAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIP 474 Q+IY FR AD + + R E+ L TN+RS P ++N N LF+ + P Sbjct: 417 QSIYRFRRADPEVFHQLRQEIPEKGRLPLSTNFRSQPAILNFTNCLFASAMAHYYESLTP 476 Query: 475 FIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 F + + F+F P +K+ + T A AA+IR L+ Sbjct: 477 F-DQQQHSPTPGIEFLFASPDDPDIKL---------ADAIRETEADWIAARIRQLLEDET 526 Query: 535 R---GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 + + R V DI +L RS + AL + YL + + Sbjct: 527 PRIWSKNPQSGERELRRVEPGDICILFRSLSSVSLYEKALQEHNLDY-YLVGGRAFYAQQ 585 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVE-------- 643 E ++ L Q + + + E +L L + L+ I + + ++ Sbjct: 586 EIYDLSNLCQYLDSSDDELSLLGLLRSPFFSLSDDTIYAITRHAESLTAAMQVAPPDHVR 645 Query: 644 ------------EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 R + ++ +L + LL G+R+L ++ + Sbjct: 646 PEQKRQVRYAQAVLQELRTKKDRLSLVELLNLALERTGYDAALLNEFLGDRKLANLRKLI 705 Query: 692 ELLQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 EL + + L + V+ + ILE + L +++++TIH+SKGLE+P Sbjct: 706 ELARNFEASGLFTLKDFVQRIRDSILE--ESKEELAATLPETSDVIRLMTIHQSKGLEFP 763 Query: 751 LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA----APESVDLAEAERLA------EDLR 800 +V + + + A+L+L A PE+ + E +R Sbjct: 764 VVIVADMDRRSQGASKDPFLHPEWGALLNLPAERGVTPENFAFKMHRAIEQNADEDETVR 823 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI--- 857 LLYVA+TR+ + L RR + + L G P L Sbjct: 824 LLYVAVTRAADYLILSAGLPYDRRVQSPWMKLLSR---HFDLSTGLPTLDPYLGHFTMGN 880 Query: 858 ---EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP-GDNWRVTSYSGLQQRG 913 + + + + QT ++ ++ ++ A Q P G T ++ + R Sbjct: 881 VQQDQIPEIRVHLNRPQTATKPAKKIKELKPSQFWAALEQGSPGGYPETFTVFAPQKNRQ 940 Query: 914 HGIAQDLMPRLD--VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN 971 + + D + T GT HS+ E LD +P + Sbjct: 941 SHFSVSHLEVADALIQELPEPQYQRLSTADLLNADEATQLGTLTHSVIERLDPLKPEQSD 1000 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + E L L L I + A E+ + + +AR E+EF L + Sbjct: 1001 RIVE-LVLFDQPQVAGDKLKPLIQQQIAA-WYESEICSALKAARVHYRELEFLLRL---- 1054 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDS 1090 P + + G ID V++ + R+ +LDYK+ G Sbjct: 1055 -------------------PATSDKESAVTVTGMIDAVYQTDDQRWVVLDYKT---GARL 1092 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 + + + + Y+ Q +YTLA+ + Sbjct: 1093 AQLADEELISE-----YEFQLGVYTLAVEQL 1118 >UniRef50_D1BPN9 Recombination helicase AddA n=3 Tax=Veillonella RepID=D1BPN9_VEIPT Length = 1288 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 196/1028 (19%), Positives = 376/1028 (36%), Gaps = 139/1028 (13%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + L + PL+V+EL+VVTFT+AA E+ R Sbjct: 23 NQTLLVAAAAGSGKTAVLVERIITRLKDMDN------PLSVQELMVVTFTKAAAQEMSAR 76 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + + E + A + L + A + T+H FCQ Sbjct: 77 IGLALAKAM------------------ESTEDAAMQERLERQLNLLPSAHISTLHSFCQW 118 Query: 136 MLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRR-------HCYPL---------PR 177 ++ ++ + ++ + +LL+ + AD + + Y L Sbjct: 119 VIRSYFYKLDINPTARIGNEAEMALLQQEVLADLLTKSYEEGLYNIYELADFFSDDKSDA 178 Query: 178 EIAQVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 + + + P LR + + + E + S H ++ RI Sbjct: 179 GLTAKIMSLYNYAMSLANPDGWLRKALEPYKEAMNINPSDTMWGEYMWSNHLAVIDRIRE 238 Query: 232 VK-------------QQWRDAVGELDALIESSGIDRRKFNRSNQAKWID-KISAWAEEET 277 +W++ A + + + + K +D I + Sbjct: 239 RLGRMEQILLNPVGPHKWQNIYDNQLAALSMLSAAQSWNDMGDACKHMDTFIKDQFRMGS 298 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAE 334 Q+ + + + L + K + + +F + L E + + + Sbjct: 299 KEAQVYDPILVAEFKSLGVQNKDDLKAMQTAIFTVPEATLQEQFKAQYPIIEGLVELTIA 358 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSAL------RSESGEVLAAAIRTRFPVAMIDEFQD 388 + K+ +G + F D+ + L +A ++ F M+DE+QD Sbjct: 359 FHKAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSEVAKELQDTFKEIMVDEYQD 418 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKAR------SEVHAHYT 442 T+ Q I I +GD KQAIY+FR AD +M+ V Sbjct: 419 TNGVQETIINLISRVDNR---FYVGDVKQAIYSFRMADSSLFMEKYNTYGGTDAVERRID 475 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L N+RS ++ + N LF Q E+ + +S + + V + +++ Sbjct: 476 LAKNFRSDANILAATNFLFYQIMTEDAA-ELNYTEAESLIPGRIVEDVPEDWVGGDVELQ 534 Query: 503 LMEGESCGVGDYQSTMAQVCAAQ--------IRDWLQAGQRGEALLMNGDDA-RPVRASD 553 L++ +G +S + + I ++ + + N D R + D Sbjct: 535 LLDVSKDTLGASESDEDEGDDPENNERELDFIIQKIKEIHAAKKQVQNPDGTFRQIEWRD 594 Query: 554 ISVLVRSRQEAA-QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 ++L RS + +A+ IP+V ++ RD FE E Q +L LL + PE++ + Sbjct: 595 FAILRRSLAGWGTRAVEAMRQAGIPAV-VNERDGYFEAQEIQLLLALLSIIDNPEQDLPM 653 Query: 613 RSALATSMMGLNALDI--ETLNNDEHAWD---------------VVVEEFDGYRQIWRKR 655 + L + ++GL+A ++ L+ + W + + +R + R+ Sbjct: 654 AAVLHSGLVGLDANELGALRLSGEGSLWSLMPAYAEVAQDERLLAFIGHMERWRTLSRRH 713 Query: 656 GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHI 715 GV +L + +++ + A G R ++L + + + G + L R+L Sbjct: 714 GVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYD--RAKGYEASGFRGLFRFLRFVE 771 Query: 716 LEPDSNASSQQMRLESD-KHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDR 771 DSN + S+ ++V+++TIHKSKGLE+P+V+L + N D+ Sbjct: 772 SLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFLSGVQKRFNMMDLRSELLIDK 831 Query: 772 HSFEAVLDLNAAPE----------SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 ++ + D+ EA AE+ R+LYVALTR+ + + Sbjct: 832 NAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVALTRARDKLFMT--GFI 889 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVN 881 + + KG S +G L++ + L T I + + W + Sbjct: 890 KGFKNSKG----VLSTMGELIKNAASVETQQLPTDIITQANTYLDWMMMGFARHLDGGNP 945 Query: 882 DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ--DLMPRLDVDAAGVASVVEEPT 939 E T LP R L+ H + DL + D+D + V + Sbjct: 946 LRVAIEYEGPTYFDLPDKQCR------LKVEIHDGSLYGDLDYKADIDETTINKVRDLKA 999 Query: 940 LTPHQFPR 947 + + P+ Sbjct: 1000 VNSVELPQ 1007 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 39/225 (17%) Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD---FTQPVDPNW 972 Q + D A V + + GA GT +H + L +TQ Sbjct: 1091 SVQPVKVSEDDLANSVFGRKPQALQSKEDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKE 1150 Query: 973 VREKLELGGFESQWEPVLTEW-ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + + G F + +L++ + + L G L ++A+ + E+ F + Sbjct: 1151 LDALVAKGTFTEEERNLLSDTSLYKFFSSDL---GKRL--INAKRIERELPFSMLFEGKR 1205 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 + L L+G ID F G + L+DYK++ + Sbjct: 1206 VYDTL------------------EDGENLFLQGIIDTAFEESGEWVLVDYKTDRVTSGED 1247 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 RY +Q LY AL R + Y Y Sbjct: 1248 -----------LIKRYKIQMDLYKEALQRLTGMPVKACYIYSFRL 1281 >UniRef50_UPI0001BC38AF DNA helicase II / ATP-dependent DNA helicase PcrA n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC38AF Length = 1174 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 210/1227 (17%), Positives = 425/1227 (34%), Gaps = 192/1227 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS+ L+ A+AG+GKT + + + P+ ++ ++ Sbjct: 1 MSNWTSEQQTAIYERNCNLLVSAAAGSGKTAVLVERIVSRVFDE------RNPVDIDRIV 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT++A E++ R+ ++ A + + Sbjct: 55 IVTFTKSAAGEMKERLTKRFEDILKADCGN---------------------RRAIRQIAL 93 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPRE 178 ++ A + TI FC +L G ++ + + L++ + Sbjct: 94 INHAKITTIDSFCSYILKNYYNTIGYEPSYRIADKGETELIKEDVYNELLEERLKNNDEN 153 Query: 179 IAQVVFETWKGPQ-ALLRDINRYLQGEAPVIKAPPPDDETLASRH--------------A 223 + + +G A DI + L + P A + Sbjct: 154 LITAINSLTQGKSIAPFFDIIKKLYDASESHPWPKEWLSDCAKLYDIDNEEELNASPVIE 213 Query: 224 QIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKI------SAWAEEET 277 + + I + + + L L E G+ + + + ++ + Sbjct: 214 YLFSYIKELLNEMSQSYDNLIELCEDPGLSGVRDVLCDDKSKVTRLLECNSFTELNNNAD 273 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAID--------QLLAEPLSIRDLV-- 327 +++ K + + L D A + + + E ID ++ E +R + Sbjct: 274 KNFRTKPRAGKGTDKELSDYITAERNSLKKEITEIIDLYCCYPYEDIIDEVACVRTSITA 333 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV-----LAAAIRTRFPVAM 382 + E + K R F D+ R L S+ G+ +A + + Sbjct: 334 VVDFTTEFADRYREAKEERQIAEFSDVAHRALEILVSKEGKTEKYTHVADELSELYDEIY 393 Query: 383 IDEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMK------ARS 435 IDE+QD++ Q +I + + + ++GD KQ+IY FR A ++ Sbjct: 394 IDEYQDSNYVQEKILNAVSRCRFGCNNIFMVGDVKQSIYRFRMARPEIFIDKYNTYTEEQ 453 Query: 436 EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV-KSAGKNQALRFVFKGE 494 L N+RS ++NSVN +F + M + + I A N + Sbjct: 454 SPERKIELHKNFRSTVNVINSVNDIFRR----IMKKSVGNIEYNDDAALNYGGNIKDEIN 509 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 T + M++ E + A++ A +I++ + + + D Sbjct: 510 TDTDICMYVKESDDYNDDSKGIINAEIAAMRIKEIMAENEE-------------LTYKDF 556 Query: 555 SVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 +L+RS ++A + D L + IP+ Y S F E + ++ +L+ + +E L Sbjct: 557 VILLRSGKDAGPEYVDTLGNMGIPADYAS-TTGYFSAYEVRLIIDVLKVIDNERQEIPLL 615 Query: 614 SALATSMMGLNALDIETLNNDE---HAWDVVVEEFDG-----------------YRQIWR 653 + + + G A ++ + + + +D + E G YR+ Sbjct: 616 AVMKSYFAGFTANEMALIKGNRRKKNYYDCLCEFSKGDGETAKKCRKFMNFIGEYRKKAG 675 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDI-LHISELLQEAGTQLESEHALVRWLS 712 + ++ L+ + + + G RR +I + I + + T VR++ Sbjct: 676 VMTIRELVSELIYSTGYYDYVGFLLNGSRRKMNINMFILQAEKFEKTSFSGLFNFVRYID 735 Query: 713 QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRH 772 + I D + +D + V+I+TIH+SKGL++P+V L ++ R E+ + Sbjct: 736 K-IRNYDVDFGE-AGNAGNDNNYVRIMTIHQSKGLQFPVVIL-GNSDKRFNEEDL---KS 789 Query: 773 SFEAVLDLNAAPESVDLA-----------------EAERLAEDLRLLYVALTRSVWHCSL 815 D + + VDL E E E++RLLYVALTR+V + Sbjct: 790 KIIIDEDFGISMDYVDLKSRRKQKFLFKEIMKKKYEREGTGEEIRLLYVALTRAVQKLVV 849 Query: 816 GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE--ALCD--DDIAWQTAQ 871 +V + ++ +D+ +S + G + + ++ LC + I + Sbjct: 850 T--GVVSSKKYEEFTSDIDRSIIDMKFILGNKNYISLILGALQSDELCGKYNYICYDNEL 907 Query: 872 TGDNQPWQVNDVSTA--ELNAKTLQRLPGDNW----------------RVTSYSGLQQRG 913 DN V + T EL + + YS + + Sbjct: 908 LTDNVKDAVKEDLTDINELFRRAFSGRKDTEQVKNTVEYIYPHKEIKNLKSKYSVSEIKH 967 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV 973 + ++ V A V + +G GT H FE L++ D N + Sbjct: 968 MSMEENEDEASKVIAPERTKAVPRFRKGVDEEVKGTLRGTAYHRFFEILNYDCCKDYNSI 1027 Query: 974 REKL----ELGGFESQWEPVLT-EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPIS 1028 E L G ++ ++ + LQ L + S E F + + Sbjct: 1028 EEYLKTSVAAGKISEEYAGLINLKRFEEFLQTDLGKRMGS--AYKKGLLFREQPFIMELG 1085 Query: 1029 EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088 A +D + + +++G +D F E + Y++DYK++ + + Sbjct: 1086 ----ADMIDKEYPSDEKI--------------LVQGIVDAFFFEEDKVYIVDYKTDRVEQ 1127 Query: 1089 DSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 + ++A+ RY Q +LY Sbjct: 1128 GKA--GEKALVE-----RYHKQLELYA 1147 >UniRef50_UPI0001C36633 recombination helicase AddA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36633 Length = 1244 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 204/1273 (16%), Positives = 417/1273 (32%), Gaps = 228/1273 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R++ PL +++LLV+TFT+AA E+R R+ Sbjct: 19 NLLVSAAAGSGKTAVLVERIIRMITEGKN------PLDIDQLLVMTFTKAAADEMRERV- 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E++ + + + + A + A + TI FC ++ Sbjct: 72 -------------------LLAVDEKLKEDPENSHLQMQAAM-IPYARITTIDSFCLGII 111 Query: 138 NLNAFESGMLFEQQLIEDESLLRY------QACADFWRRHCYPLPR-------------- 177 + + ++ ++ LL Q D++ R Sbjct: 112 REHYNRLDIDPAFRVGDEGELLLLRGSVMEQMLEDYYEAGDEEFSRFVETYATGKSDRGI 171 Query: 178 -EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 + V+ + + + E + + + + Q Sbjct: 172 EDHIMAVYNFSGSNPWPEEWLTACETELENCEEERLMETEWMHFLMWDVAMQTGELCAQL 231 Query: 237 RDAVGELDA---------LIESSGIDRRKFNRSNQAKWIDKISAWAEEET----NSYQLP 283 +AV + ++ S R+ ++ ++++ A + S + Sbjct: 232 EEAVTVCEEENGPTAYIPMLTSDLRMLREIGKAEDYASLNELLGCAAFDRLASIRSKDID 291 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEIRETVAR 341 + F + KA G+ FE+++ ++ + V + + E + Sbjct: 292 ADKKAFVTGCRDRVKKAVGKLRDLYCFESMETVVRDMRGTAGAVRMLLKLAGEFNDRYQA 351 Query: 342 EKRRRGELGFDDMLSRLDSALRSES----------------------GEVLAAAIRTRFP 379 K+ + + F D+ L + +A + +F Sbjct: 352 AKQEKNLVDFGDLEHYALEVLLEKPDGESEECAGDSMDDSLDASGRRPSAVADELSRQFE 411 Query: 380 VAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 ++DE+QD++ Q + I + T + ++GD KQ+IY FR A ++K Sbjct: 412 EILVDEYQDSNDVQETLIHAISRERFGTPNVFMVGDVKQSIYKFRLARPELFLKKYESYP 471 Query: 439 AH------YTLDTNWRSAPGMVNSVNKLFSQ-----------TDDAFMFREIPFIPVKSA 481 L N+RS +++ +N++F Q T+DA + F P + Sbjct: 472 REEGLYQTIELHQNFRSRDSVLSGINEVFYQIMTKGLGGILYTEDAALHPGAVFEPTEET 531 Query: 482 -GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 G L V G Q +K ME ++ + A++ +++++ + + Sbjct: 532 VGGKLELHLVNTGGIQ--LKQLEMESDALDYTS-REMEARLIVSRMKELVNPETGLKIWD 588 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 R D+ +L+RS A+ + L IP+ Y R F +E + +L Sbjct: 589 KKEKRYRTACYGDMVILLRSLSGFAEDFVNILMNEGIPA-YAERRTGYFTAIEVETVLCF 647 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLN----------NDEHAWDVVV------- 642 L + P ++ L + L + M+G + D+ L D + + Sbjct: 648 LSVIDNPMQDIPLAAVLKSPMVGASDEDLARLMAVFKRTAKKGQDRGIYGAWLYYLENCP 707 Query: 643 ----------------EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 +E YR++ + +L + + + A G+ R + Sbjct: 708 EEEREEELYRKLALFFDELAEYRRMAGYLSIHELLYVIYENTGYYDYVAAMPAGDARQAN 767 Query: 687 ILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 + + E + + + S L ++ + + L D + V+I++IHKSKG Sbjct: 768 LDMLVE--KASAYEKTSYSGLFHFIRYIEKLKKYDTDFGEAALAGDGNTVRILSIHKSKG 825 Query: 747 LEYPLVWLPFITNFRVQE---QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDL---- 799 LE+P+++L + ++ D A L+ + + Sbjct: 826 LEFPIIFLAGMGKKFNKQDLYGKILIDPDLGIATDYLDLDLRVKTSTLKKNVLRRRLELE 885 Query: 800 ------RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT-------------DVHQSALGR 840 R+LYVA+TR+ + + ++ S L Sbjct: 886 ALGEELRVLYVAMTRAKEKLIMTGTDRYLDKKLERFSDIKRTAGQIPFTILSTADSFLDW 945 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL-----QR 895 LL + + + + + D ++ + +L+ + L R Sbjct: 946 LLMSLSGKLSESALLSEAGVETGLMTVREYSVADLVGVEIEHQAEKKLSKEELLNFDCSR 1005 Query: 896 LPGDNWRV---TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP------ 946 + + + ++S I + V EE + P Sbjct: 1006 IYDEAYAAGISAAFSYHYPHTADIGLHTKLSVSELKKQGQMVDEEESTFLPTIPAFLMEE 1065 Query: 947 -------RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEP---VLTEW--I 994 GA GT H E L+F V LE E + L + I Sbjct: 1066 NGKKEQGGGAFRGTAYHRALELLEFPAMKTLADVETALETFHREKYMDEESLALLDAGII 1125 Query: 995 TAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 L +PL G +S ++ E +F + I R+ + +G L Sbjct: 1126 WNFLSSPL---GRRMSAAQSKGLLYKEQQFVIGIP-----------AREMEVCDSGELVL 1171 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 ++G ID L+DYK++ + + ++ RY +Q + Sbjct: 1172 --------IQGIIDAYMEEGDGLVLIDYKTDHVVKG---------HESLLTERYGIQLEY 1214 Query: 1114 YTLALHRYLRHRI 1126 Y AL + R+ Sbjct: 1215 YKRALEQMTGKRV 1227 >UniRef50_B1C9D6 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D6_9FIRM Length = 1171 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 208/1261 (16%), Positives = 431/1261 (34%), Gaps = 228/1261 (18%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ D + LI A AG GKT + +RL+L +++ L Sbjct: 1 MNWTKSQSDAINTD-NKNLLISAGAGCGKTAILTNRIIRLML--------EEKTDIDKFL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT AA + ++ +IR + +I +K ++L Sbjct: 52 VVTFTNAAASGMKEKIRKLL--------------------YSKIKEKNNDKRYLFDQISN 91 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE------SLLRYQACADFWRRH--- 171 +++A + T+H FC ++ + ++I+ D +++ Sbjct: 92 LEKANISTLHSFCISVIREYYHLVDVDPAFKIIDSTNANILMDEAFDMLFEDRYKKEDKD 151 Query: 172 ---------CYPLPREIAQVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDE 216 E ++ E + P LR+ + I+ D Sbjct: 152 FINTSISYSFNADEEEFKNILKEIYFFIYNRPNPFKWLREKVDLFNDDFNDIENSMFIDI 211 Query: 217 TLASRHAQIVARID-----TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA 271 + + ++ K +A +L ++ +D K ++ ++K Sbjct: 212 IKDKINGYLSLALNYSSKAKDKAIRYEANDDLLEILNM-DLDGLKNTQNLLINNLEKFI- 269 Query: 272 WAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHP----LFEAIDQLLAEPLSIRDLV 327 + + + ++F L+ KA + R+ L +A++ L I D+V Sbjct: 270 -------TLKPADIFKRFKAGGLKGEEKAEVQNLRNESKDILKKALNILTFNYKDIIDVV 322 Query: 328 ---------ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRF 378 I +A+ + + K +G L F D L E I ++F Sbjct: 323 HELYPHMKTIEQAIIDFDAYYSHLKSEKGVLEFKDTEHLCLKILEDEKA---REEILSKF 379 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYM------K 432 +DE+QDT+ Q I ++ E L +GD KQ+IY FR A+ ++ K Sbjct: 380 DYVFVDEYQDTNLVQEAIINKVI---KENNLFTVGDVKQSIYRFRQAEPEIFLDRIKNYK 436 Query: 433 ARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK 492 +++ ++TN+R+ ++ +N LF + + + +N+ L Sbjct: 437 KDEKINKTVYMNTNFRTNKNIITGINTLFEKIMSKKTGK-------INYDENERLIAGRD 489 Query: 493 GETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQ-----IRDWLQAGQRGEALLMNGDDAR 547 E + +++ L+ ++ GV + S ++++ + I + + + R Sbjct: 490 EEIESKIEVHLINKDTAGVDSFDSELSELSTEENEITYIALMINNLIGTDIYDPELKEYR 549 Query: 548 PVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 V+ SDI +L RS V++ IP V F+TLE + + L + Sbjct: 550 KVKFSDICILHRSANTRIKNVKEIFNKYSIP-VTSEKEIEYFKTLEIETIKDFLSIINNF 608 Query: 607 ERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV--------------------VE 643 + + TL S + + + ++ + + H + + ++ Sbjct: 609 KDDITLLSVMRSPIFNFTVDELLEIKISTRESHYYKSIMSFINKENVNITLKDKVKNMLK 668 Query: 644 EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLE 702 + Y V ++ + NI + + A G R+ ++ + E E Sbjct: 669 VINDYSDRSLYTSVPDLISNIYEETNIMDYMSALPFGNIRVNNMKTLLIKANEYESFSNE 728 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV 762 + + ++ ++ +S + E ++ V ++IHKSKGLE+P+V L Sbjct: 729 GLYGFINFMDYAKIQSESGYAFS----EDSENSVNFMSIHKSKGLEFPIVILMGCHKMF- 783 Query: 763 QEQAFYHDRHSFEAVLDLNAAPESVDL-----------------AEAERLAEDLRLLYVA 805 + DL P +DL E L+E++RLLYVA Sbjct: 784 ---NMLDTKKPIMLNKDLGICPSLIDLDNKYKVDSIFKICAKIVENNEILSEEMRLLYVA 840 Query: 806 LTRSVWHCSLGVAPLVRRR-------GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 LTR+ L ++ + S L ++Q P I Sbjct: 841 LTRAKEKLILTAYSKDTKKLIDNLPSNITPYSVEFSNSYLEWIMQGILPNKIYEEENNII 900 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAE----LNAKTLQRLPGDNWRVTSYSGLQQRGH 914 ++ I + + ++ + L+ K + ++ D L + Sbjct: 901 YEDNNFIVYNNKIEDLLTELSTSYINQKDDDFYLDDKIINKIKDD---------LNFKYK 951 Query: 915 GIAQDLMPRLDVDAA-----------GVASVVEEPTLTPH-QFPRGASPGTFLHSLFEDL 962 I +PR ++ V ++ E P A G +H +FE + Sbjct: 952 NIVNTTIPRKAGVSSLKNVDLLEVGNNVINLSEAPKFKQEKSVLSSAEKGNIIHFIFEII 1011 Query: 963 DFTQPVDPNWVREKLELGGFE---------SQWEPVLTEWITAVLQAPLNETGVSLSQLS 1013 D + ++ +++ E + + + +I + + + + Sbjct: 1012 DIDKLKKTENIKAEIDTQIREFINKKMIKQEEVDNIDINYIYNFFDSNIGKE-----LIH 1066 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR-H 1072 ++ E+ F L + I+ + + + +++G IDL F Sbjct: 1067 SKKIYRELPFNLALKAKDISEK-----------------WKDSEEEILVQGIIDLTFETK 1109 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDY 1131 +G L+DYK+N Y ++ + +++Q Y A+ + + Y Y Sbjct: 1110 DGAMILVDYKTNH-------YNNESEKKELLK-GFEIQLNYYKRAISTLMNKNVKHSYIY 1161 Query: 1132 E 1132 Sbjct: 1162 F 1162 >UniRef50_C7XXL2 Recombination helicase AddA n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XXL2_9LACO Length = 1281 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 173/954 (18%), Positives = 341/954 (35%), Gaps = 180/954 (18%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + ++LL R L ++E+L+VTFT+ A +R RIR Sbjct: 22 LVSASAGSGKTAVLVDRVVKLLKE-------NRHLNIDEMLLVTFTKEAAKNMRERIRKR 74 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + + +D+ Q LA A + TIH FC++++ Sbjct: 75 L--------------------VADSNDQHMKTQINRLAL-----ANISTIHSFCEQVIKR 109 Query: 140 NAFESGMLFEQQLIED---ESLLRYQACADFWRRHCYPL----------PREIAQVVFET 186 + G+ + +L+ D ++LL+ Q D + ++A+ + Sbjct: 110 YYYVIGLDPQYRLVTDATEQALLKEQVWNDLQEKRFKEDYAKADPSKWHFSQLAENFADA 169 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA-------QIVARIDTVKQQWRDA 239 L+++ L EA P + Q T+ R Sbjct: 170 KSNVGEGLQEVVEKLYQEANAQPDPDQWLSQTERNYQFGDDPIIQTTFYQQTLLPILRQF 229 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE--------KF-- 289 +L A E N A+ + ++ S E KF Sbjct: 230 FDQLIADWEGLVTKASTSGFDNLAETLTGDLILVKDLQKSLTTATWDELQAQISGIKFGR 289 Query: 290 --SQRFLED---------------RTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL 332 +QRF +D K +T + F+ ++ L + +++ + Sbjct: 290 LKTQRFKDDPDGKAHYDELKDGRNELKKRLKTLQDKYFQYDERELRAKTAAARMMVEELV 349 Query: 333 ---AEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDEFQ 387 + R++ K R L F D+ L +S++G+ + +R + ++DE+Q Sbjct: 350 SVTKDFRQSYQEAKLARHMLDFSDLEHYAYQILTNQSDAGKQVLNELRHHYREILVDEYQ 409 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHY 441 DT+ Q + ++ H L ++GD KQ+IY FR AD ++ Sbjct: 410 DTNRLQDDLLNQL-HDPQLNHLFMVGDVKQSIYRFRQADPTLFLDKYERYQSSSKNDETI 468 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ-ALRFVFKGETQP-AM 499 L N+RS + N +F+Q D R + +P + + A ++ E P Sbjct: 469 ILAENFRSMNNVTEFTNLVFTQLMD----RTVGEMPYDDQAQLKFAAKWYDPKEVSPVPT 524 Query: 500 KMWLMEGESCGVGDYQSTMAQ------------------VCAAQIRDWLQAGQRGEALLM 541 ++ + + + Q + A +IR L +R Sbjct: 525 ELMVYDANADNETIIDKEENQQRYIKLPEGSDKYAGEVWMVAMRIRQMLDNQER--IYDP 582 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 RP++ +DI +L R++ ++ + L IP V + + + F+ E + M+ LL+ Sbjct: 583 ELGHERPIQPADIVILERTKSPNNRIVEQFGQLNIP-VVVQDVQNYFKATEVRTMISLLK 641 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLN-----------------NDEHAWDV---- 640 + P ++ L + L + ++GL ++ L D W Sbjct: 642 VIDNPYQDIPLVAVLRSPIVGLTEPEMAYLRINHRYGNFYEAVQFFTQQDPEQWSATTDV 701 Query: 641 -----------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 ++ ++ +++ ++ ++ + + + GG +R ++ Sbjct: 702 DLEKLHVKLSRFLDRLTKFKVTAQQQSLVDLIWQIYQTTGYLDYVGGIPGGSQRQANLHA 761 Query: 690 ISELLQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + E + + + + ++ + + + D + + L +D V ++TIH SKGL+ Sbjct: 762 LYERAHTYEQSSFKGLYQFIHFIER-MQKRDEDLGEAPVELATD--AVNVMTIHGSKGLQ 818 Query: 749 YPLVWLPFIT---NFRVQEQAFYHDRHSFEAVLDLNAAPES------------------- 786 +P+V++ + N R + H + L AP Sbjct: 819 FPIVFVIDMNHHFNSRDVAGNLVIEPHLGIGIRYLGDAPMKGDDQSLTAENIKVTYDLPQ 878 Query: 787 ----VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 D AE++RLLYVALTR+ L + + + S Sbjct: 879 RTVVADAITRANRAEEMRLLYVALTRAEQRLILTGSVNEKNSKNNLKALGKQWS 932 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 43/229 (18%) Query: 921 MPRLDVDAAGVASVVEEPTL--TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE 978 + + + S +P T P GT H +F+ LD T Sbjct: 1078 KTEVKDEGQYLQSSFNQPRFMQTGDSAPAPTEVGTATHLVFQMLDLTT------------ 1125 Query: 979 LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDT 1038 + + I +++ L +Q+ EFY I Q Sbjct: 1126 ----GEVTADQVQQTIDQLVRERLIANRRIAAQIDVAGIV---EFYQTALGQRILQQPAA 1178 Query: 1039 LIRQFDPLSAGCPP------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 ++R+ P S L+ + ++ G ID + L DYK+++L Sbjct: 1179 VVREQ-PFSMLLEGDQLFKNLDHDDGQILIHGIIDGYLKGNQGIELFDYKTDYLLPHD-- 1235 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLAL---------HRYLRHRIADYDYE 1132 Q +A + RY Q LY AL HRYL YE Sbjct: 1236 --DQRLAEIVD--RYQGQVNLYAAALRQMTGLPVSHRYLYLVKTGTLYE 1280 >UniRef50_Q2VZK9 ATP-dependent exoDNAse beta subunit n=4 Tax=Alphaproteobacteria RepID=Q2VZK9_MAGSA Length = 1154 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 222/1183 (18%), Positives = 398/1183 (33%), Gaps = 172/1183 (14%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + ASAGTGKT + L LLL ++L +TFT+AA AE+ RI Sbjct: 24 SVWVAASAGTGKTKVLTDRVLTLLLAGTPPH---------KILCLTFTKAAAAEMSNRIA 74 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE---AAVFTIHGFCQ 134 + + A + D+ RLL + L +D + TIH FCQ Sbjct: 75 GRLGQWATAHDSDLADD--LGRLLGRAPSPGEMTGARRLFAALLDAPGGMHMETIHAFCQ 132 Query: 135 RMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 +L E+G+ Q+++D L A + + + T + + Sbjct: 133 SLLRRFPLEAGIAPHFQVMDDRDAGELLEAAKLEILSQARMGDGALGGALALVTSRVHET 192 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI--------DTVKQQWRDAV---- 240 ++ L E ++ + A + R+ D++ D Sbjct: 193 AFPELMGELTAERGRLERLFERHGGVEGALAALRTRLGLEAGDTPDSLLAWATDEAHFQG 252 Query: 241 ----GELDALIESSGIDRRKFNRSNQAKWI-------DKISAW-AEEETNSYQLPESLEK 288 + AL+ S DR++ A+W+ + + W A+ T + ++L Sbjct: 253 EGLREAVAALLTGSDSDRKR--GEAMARWLADPAGRENGFAGWCAQFLTAEGGIRKTLAT 310 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 + R + L+ ++L A ++ + + + R K R Sbjct: 311 KAVREGFPGVEDCLLAEAERLYRLTERLRAARIAEATGALLTLGGALLASYRRAKTHRAL 370 Query: 349 LGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---- 403 + +DD++ L + + +IDE QDT+P Q+ + ++ Sbjct: 371 MDYDDLILGARDLLARPGVAPWVLYKLDGGIDHVLIDEAQDTNPDQWAVVEKLTEEFFAG 430 Query: 404 ----QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRS 449 + + +GD KQ+IY+F+ AD + + R H L+ ++RS Sbjct: 431 RGARETLRTVFAVGDAKQSIYSFQRADPREFERMREAFATHVPAAGGKWEVVDLNLSFRS 490 Query: 450 APGMVNSVNKLFSQ----TDDAFMFREIPFIPVK--SAGKNQALRFVFKGETQPAMKMWL 503 AP ++ +VN +F+ D +I +P + AG+ + V + W Sbjct: 491 APAVLEAVNAVFAPGRPGRDGVAGDEDITHLPHRGGQAGRVEVWPVVEPRPADE-LPAWK 549 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 E ++ +A++ AA+IR + GE L G RPVRA D+ VLVR R Sbjct: 550 PPVERIRGDSPRTRLARLMAARIRAMID----GEVLESKG---RPVRAGDVLVLVRRRGG 602 Query: 564 A-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 + L ++ V ++R + E + +++ L ++ PE + TL + L ++G Sbjct: 603 FVEDLVRELKSRKV-EVAGADRMVLTEQMAVMDLMALGNFLLLPEDDLTLATVLKGPLVG 661 Query: 623 LNALDIETLNN----DEHAWDVVVEEFDG----YRQIWRKRGVMPMLRALMSARNIAENL 674 L + TL + D W+ + + + +R+ + +S + + Sbjct: 662 LGEDQLFTLAHHRGKDVGLWEALRQGVADEGGVFEAAFRRLSELLAQADRVSPHTLYARV 721 Query: 675 LA------------TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 L E + + + ++ L S + WL LE + Sbjct: 722 LGPLGGRRRLLARLGLEAEDSIDEFMSLT--LAFERAHPPSLQGFLHWLEAGALEIKRDL 779 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA 782 ++ + V+I+T+H SKGL+ P+V+LP + + Sbjct: 780 E------QAGRDAVRIMTVHGSKGLQAPIVFLPDTMQVPTRSPRLLWLGEGEGELPAWPP 833 Query: 783 APESV--------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 E + D + R E RLLYVA+TR+ + R +T H Sbjct: 834 RAEDMDSVCRQGADARKQSREREYRRLLYVAMTRAEDRLVVC----GWRGLKAAPETCWH 889 Query: 835 QSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 L D L E + AQT + + Q Sbjct: 890 ALVQCALAPTAAAFDDPFLAKAAETAEGPVLVLANAQTAPPEKEKGAGPGAG-------Q 942 Query: 895 RLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTF 954 P +W + S P G V P PR G Sbjct: 943 SSPLPDWALLS-------AEPEPIPPRPLAPSRPEGEEPTVRSPLAEMDGKPR-WQRGKL 994 Query: 955 LHSLFEDL-DFTQPVDPNWVREKLEL--GGFESQWEPVLTEWITAVLQAPLNETGVSLSQ 1011 +H L + + D P + L G E+ + + ++ +L P Sbjct: 995 IHRLLQTVPDLPPPDRSRAMLRFLARPAWGLETPEQLAIANEVSDILDHP---------- 1044 Query: 1012 LSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR 1071 L F P S PL ++ G +D + Sbjct: 1045 --------------------------GLAGLFAPGSRAEVPLVGRIGDRVVSGRVDRLAV 1078 Query: 1072 HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 + + DYK+N + + M A+R L +Y Sbjct: 1079 SDTEVVIADYKTNRRPPATPDEVPELYVRQMAAYRLAL-ACIY 1120 >UniRef50_Q2FNI4 UvrD/REP helicase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FNI4_METHJ Length = 1149 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 226/1241 (18%), Positives = 419/1241 (33%), Gaps = 220/1241 (17%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ L+ + ++ A AGTGKTF + YL L+ G + ++L Sbjct: 1 MAATPRQLEAISR-HDVSMVVTAGAGTGKTFVLVEKYLNLVQDQG--------YRIRDVL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +TFT+ A AE++ R+R I E L++ DN +++ EE+ Sbjct: 52 ALTFTDKAAAEMKERVRKTIAER----LKDDPDNQVWKDAHEELVI-------------- 93 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL--RYQACADFWRRHCYPLPRE 178 A V T H FC ++L A E+G+ ++++ L +A R+ + Sbjct: 94 ---APVMTFHSFCAQILREFAIEAGLDPGFVILDEGQALAVEREAFETLIRKPPEEIQES 150 Query: 179 IAQVVFETWKG-----PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 + +++ + K L ++ + +LQ + P Q+ + Sbjct: 151 LIRLLAQIEKFQVNQIMTTLAKNTDAFLQFAEDLAGDPDGIINAWEIFLEQVRTPVINQF 210 Query: 234 QQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRF 293 D + I + R K +R+ +++ ++ + + T PE+L K ++ F Sbjct: 211 FADTDIRDAISDFIRFEEVYRNKDDRA--VRYLQQVCPYLYDLTPDAP-PETLHKAAEEF 267 Query: 294 LEDR-------TKAGGETPRHPLFEA----IDQL------------LAEPLSIRDLVITR 330 L+ R K EA I+ L + + R Sbjct: 268 LKIRPTGKLGSQKIWDNDDLIRFREAKTCLIENLEKAVPFFSLYIDKDSRFTASTITFFR 327 Query: 331 ALAEIRETVARE----KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEF 386 LA + KR+ + F+D++ L+S +++A IR R+ ++DEF Sbjct: 328 DLALVAGYYFDLLHMLKRQANGVDFNDLIQLTREFLQSHQ-DIVARHIRPRYQYILVDEF 386 Query: 387 QDTDPQQYRIFRRIWHH--QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HA 439 QDTDP Q+ I I +L ++GDPKQ+IY FR AD+ + +A++ + Sbjct: 387 QDTDPAQFEIITAIIGELQPGTRSLFIVGDPKQSIYLFRNADVTRFKEAQTRILSDCKGN 446 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPA 498 LDT++RS ++ VN LFS+ + E + P++ +A P Sbjct: 447 LINLDTSFRSCREVIGCVNYLFSRIFASTEKPWEFGYEPIQVCDDRKA---------SPG 497 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAG-QRGEALLMNGDD-ARPVRASDISV 556 L+ G++ G +S ++ A + D + G + + D RP DI++ Sbjct: 498 SITVLLPGKAP-KGSERSETKEIEAGMVADLVHQIVSCGSFQITDRDGVMRPAGYGDIAI 556 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L+ R + AL+ E P Y+ + E ++ +L ++ P L L Sbjct: 557 LIERRTHLTRYTTALSRKETPF-YVHGGIGFYSRQEIYDIYNILSFLLRPYDSAALFGVL 615 Query: 617 ATSMMGLNALDIETLNN----------------------------------------DEH 636 + + I + N D+ Sbjct: 616 RSPYFSFSDPLIYHILNVPGAKRRWSLYEKLRACAERFCTRPSEIEPSAEILSCSPADQE 675 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 + +R + + V+P++ ++ I A GE++ ++ + +++ Sbjct: 676 LILRAARLLESWRNLAGREPVVPLVNRIIRESGILTIYGALEQGEQQAANLTKLLGIIR- 734 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLES-DKHLVQIVTIHKSKGLEYPLVWLP 755 G ++L + ++ + L++ K V I+T+H +KGLE+P+V LP Sbjct: 735 -GRTEGGYYSLFDLVQDMMISIADEEREGEAALDTLSKTSVNIMTVHAAKGLEFPVVILP 793 Query: 756 FITNFRVQEQAFYHDRH----------SFEAVLDLNAAPESVDLA---EAERLAEDLRLL 802 + + R + + D+ P L+ + + AE RL Sbjct: 794 DMGSSREGKLGPILSGDHPHLYGVRIPDPDQDFDIKETPVYTALSLIQKEKESAERKRLF 853 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YV TR+ H L + + + + G+ + Sbjct: 854 YVGATRARDHLVLCGKQPDKFYESVDKSNNRIDWVCTLFGITKDIAEEGGVISIDPEDGG 913 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP 922 I D + L + YS + I +P Sbjct: 914 KPIDITILTDPDQLTRMWAQEALPPLTLPDEYAKLSGTRKRGLYSDMPDEKATIRP--VP 971 Query: 923 RLDVDAAGVASVVEEPTLTPHQFPRGAS-----PGTFLHSLFEDLDFTQPVDPNWVREKL 977 D+ G A+ EE P G+ GT LH +F + L Sbjct: 972 VTDIGLLGKATGHEETIHQV-TIPGGSHLLPDEIGTLLHHIF---------SGKDTKSVL 1021 Query: 978 ELGGF-ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 G + E PL + Sbjct: 1022 VSYGITSPEAESFCNTLYQRFCSTPL---------------------------------I 1048 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQ 1095 +R F +S F + G ID + + + ++DYKS G+ + A Sbjct: 1049 RDAVRSFQEVSFITYSGNFP-----VTGRIDRLIQDSRNEWAVIDYKS---GDKTGA--- 1097 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 +LQ +Y +A + + Y G Sbjct: 1098 ------------ELQLNVYRIAAEVLTGQPVRMFLYSMKTG 1126 >UniRef50_C4V2E5 ATP-dependent deoxyribonuclease subunit A n=2 Tax=Selenomonas RepID=C4V2E5_9FIRM Length = 1260 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 234/1304 (17%), Positives = 416/1304 (31%), Gaps = 256/1304 (19%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ A+AG+GKT + + S L+++ +LV+TFT+AA E+R RI Sbjct: 20 HNILVAAAAGSGKTRVLVERII--------SQVRNEELSLDRILVLTFTKAAALEMRERI 71 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + ++ A + ++ L + A + T H FCQR+ Sbjct: 72 EAALNAEIDAIAGDAG--------------ISKEIDRLERQRILLTGADISTFHSFCQRL 117 Query: 137 LNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETW------- 187 L + + + +L ++ LL+ + R E Sbjct: 118 LQAHIDATDIPPTFRLASEQEIRLLKRDVMDELLERKYEEASDEFLAFADAYGGVKGDDE 177 Query: 188 KGPQALLRDINRYLQGEAPVIKAP-----PPDDETLASRHAQIVAR-------------- 228 K + +L + L +P + D R ++AR Sbjct: 178 KLKEEVLALYDFALSQPSPAVWLSRQGQEEDDVPYWKRRGFDVLARELHEKLFDLCAGYH 237 Query: 229 -------------IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEE 275 ++ LD E G + + + W A Sbjct: 238 STMDVLMQGDAELHTAAEKYMAVIHHNLDLYEELQGGLQLLISGAEDQAWERFRVDAAAA 297 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL--------- 326 + +P + L K A+DQL A + Sbjct: 298 KKQRKSIPHKSIENYDPELGGALKKKITNIYKAWDAAVDQLPATAEELCAAENRANTAIR 357 Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-----------GEVLAAAIR 375 R + EK R L F D+ R + L +A +R Sbjct: 358 QYARLALDFHHAFQNEKLERSLLDFSDLEHRALALLCRHPEQLQDDLNSVDPTDIAEELR 417 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS 435 + M+DE+QDT+ Q I R+I H ++GD KQ+IY FR AD + Sbjct: 418 AYYAAIMVDEYQDTNGLQEGILRQIAHDDNR---FIVGDVKQSIYRFRLADPSLFQHTYR 474 Query: 436 EV------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF 489 T+ N+RS ++ +N++FSQ + Sbjct: 475 AYRQDSSAGELITMSENFRSRAEVLQPINEIFSQIMTESAVEIAYDQSARLNPGRTFDDD 534 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQ--------STMAQVCAAQIRDWLQAGQRGEALLM 541 +++ L++ + + + A +I++ + AG + Sbjct: 535 PAGKSLASPLEIDLLDADYSAEEADDEGEELAAFAVESHYIARRIKELVDAGYTVQ---- 590 Query: 542 NGDDARPVRASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 + +R SDI VL+R +E A + DAL IPS Y + FE E + ML LL Sbjct: 591 ---SGKALRWSDIVVLLRGAKERAVILMDALREAGIPS-YADDTAGYFEASEIRMMLSLL 646 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNND---EHAWDVV---------------- 641 + ++ L + L + M+G++ ++ L +D + Sbjct: 647 AVLDNARQDTPLTAVLTSPMIGMSMEELALLRIHTPVGSIYDALKGADAEEVPPAVRNKA 706 Query: 642 ---VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEA 697 ++ +R+ V +L L + + A G R ++ + + Sbjct: 707 KEALQTIRCWRREALLHSVPELLWHLYRTSGYYDYVGALPDGILRQANLRMLIDRAGDFE 766 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757 T +R++ L+ S S L + +V+I+TIH+SKGLE+P+V+L I Sbjct: 767 RTNERGLFRFLRYMD--ALQRRSTDLSAARTLGESEDVVRIMTIHRSKGLEFPVVFLANI 824 Query: 758 TN----FRVQEQAFYHDRHSFEAV-----------LDLNAAPESVDLAEAERLAEDLRLL 802 + YH D ++ E +AE++R+L Sbjct: 825 AGAFNTQDISGDVLYHAHAGIGVRVYENTEIGRQKYDTLGRRSVKEVIRRETIAEEMRIL 884 Query: 803 YVALTRSVWHCSLG---------------VAPLVRRRGDKKGDTDVHQSALG---RLLQK 844 YVA+TR+ L + ++ ++G+T + LG L Sbjct: 885 YVAMTRAQEKLILTGTLRTSRSGLSRLAQLRDFCQQYAREEGETFPDAAILGASCYLDWI 944 Query: 845 G-------------EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK 891 E + LR + + + A + + AEL+A Sbjct: 945 ALALMRHPDGQALMEGVEGIELREWSDEKARFAVRIEKADVR-TSRSEEERAADAELSAI 1003 Query: 892 TLQRLPGDNWR------VTSYSGLQQRGHGI-AQDLMPRLDVDAAGVASVVEE------- 937 R + S++ + I A+ + L + V+ Sbjct: 1004 RSGEPLSPGVRAPYVDSILSWTYDSRGTEQIHAKTSVTELKRENFPDEEVLPSFAPAVGA 1063 Query: 938 ----PTLTPHQFPRGAS--------PGTFLHSLFEDLDFTQPVDPNWVREKLELGGF--- 982 +F R A GT +H+L + LDF + D + + Sbjct: 1064 GAGGQEWEVPRFLRTAKRAALSPMERGTAMHALMQHLDFAEVPDIAAIERQARSLFDQGI 1123 Query: 983 --ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 E ++ + + + + L G L + + E+ F Sbjct: 1124 LTEEAYQSLDVRNVWRFVSSAL---GRRLREAKRVYR--ELPF----------------- 1161 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + P + R L+G ID++F E G Y LLDYK++ ++ Sbjct: 1162 GRLLPAKKYYKEAQDEADRIFLQGIIDVLFEEENGDYILLDYKTDR-----------HIS 1210 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 RY Q LY A+ L + + YLFL Sbjct: 1211 PQDARTRYQFQIDLYCDAVETILERPVKE----------CYLFL 1244 >UniRef50_Q16CX8 ATP-dependent DNA nuclease, putative n=31 Tax=Proteobacteria RepID=Q16CX8_ROSDO Length = 1125 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 227/1167 (19%), Positives = 409/1167 (35%), Gaps = 165/1167 (14%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + A+AG+GKT + RLLL + E +L +T+T+AA +E++ R Sbjct: 18 DASTWLAANAGSGKTRVLTDRVARLLLD---------KVAPEHILCLTYTKAAASEMQNR 68 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA-------AVFT 128 + + E + D+ L E L + + A A+ L A A + T Sbjct: 69 LFKRLGEWAM-----LQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQT 123 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWK 188 IH FC +L E+ + + IE+ + +A + + + + + Sbjct: 124 IHSFCASLLRRFPLEARVSPQFTEIEERAADLLRA--EIIDTMAEGPDAAVIADLAQHYT 181 Query: 189 GPQALLRDINRYLQGEAPVIKAPPPDDETLA--SRHAQIVARIDTVKQQWRDAVGELDAL 246 G + ++ + + + + P +E+LA + A + A+ + D D L Sbjct: 182 G-ENFVK-LAKAVVQHKDGFRTPLSWEESLALFDQPADLTAKHIEDQVFLGDEAALFDTL 239 Query: 247 I----ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 I G D + + + ++ SA E ++ F + TK Sbjct: 240 IPPMQAKGGNDAKTAVKLKKISGLN-FSALPALEEIFLTGRKAKPPFRAKIGTLPTKPTQ 298 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDL-----------VITRALAEIRETVAREKRRRGELGF 351 + A+D + + RD + R +K RG L F Sbjct: 299 DVVSDA-MPALDDFMCRVETARDARVGLLAAQKTYALHRFAGSFLPLYEEQKTLRGWLDF 357 Query: 352 DDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH------- 403 DD++ R + L E + I ++DE QDT P Q+ + R++ Sbjct: 358 DDLIDRARALLSDEDVAAWVLFRIDGGIDHILVDEAQDTSPAQWDVIRKLAAEFTSGEGA 417 Query: 404 --QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY----------TLDTNWRSAP 451 + + + ++GD KQ+IY+F+GAD + + ++E + TL ++RSA Sbjct: 418 RQEVQRTVFVVGDKKQSIYSFQGADPREFDRMQAEFASKIEAAEQLFQNKTLAFSFRSAS 477 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKS--AGKNQALRFVFKGETQPAMKMWLMEGESC 509 ++ V++ F DA + I K G+ V ++ + W + Sbjct: 478 AILGVVDRTFDGLTDAGFTTDEQHIAFKQTLPGRVDIWPVVEPQPSEED-RAWHDPIDRK 536 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD-DARPVRASDISVLVRSRQEA-AQV 567 + +A+ A QI+ + + +G RPV+A D +LV+ R ++ Sbjct: 537 AAHHHSVILAERVATQIKAMIAHDTIPDEKRSDGKITRRPVQAGDFLILVQRRSVLFTEI 596 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 A ++ + ++R V L +++ LL + PE +L S L + + G + + Sbjct: 597 IRACKNKDL-DIAGADRLKVGGELAVRDLAALLSFLAVPEDSLSLASTLRSPLFGWSEKE 655 Query: 628 IETL---NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 + L +H W + D Y + + + + ++ E +L G R L Sbjct: 656 LFQLAHHREHDHLWQALRMRSDAYPETLKVLRDLRANVDFLRPYDLIERILTRHNGRRNL 715 Query: 685 TDILH------ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 L I+ LL +A L E V L+ ++ +++ + +++S + +++ Sbjct: 716 LARLGVEAEDGINALLSQA---LAYERNAVPSLTGFLVWMETDDLEIKRQIDSASNQIRV 772 Query: 739 VTIHKSKGLEYPLVWLPFIT--NFRVQEQAFYHDRHSFEAVL---DLNAAPESVDLAEAE 793 +T+H +KGLE P+V LP N V++ D A ++D A Sbjct: 773 MTVHGAKGLEAPIVILPDSGKRNNPVRDDIIILDDKPVWKTPANDTPGAMAAALDEIAAA 832 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 + AE LRLLYVALTR+ + A K+ DT + D GL Sbjct: 833 QAAERLRLLYVALTRAEKWLIVAAA----GELSKQNDTWYQRVDAAVDAAGARLVDMHGL 888 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 D W+ + N A L+ R P Sbjct: 889 AVKRHQKGD----WEALPLSEANQ---NTTVQATLDPCFTTRAPAR-------------- 927 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV 973 R V + + P + GT +H E L P D + Sbjct: 928 ------APLRETVSPSDLGGAKALPGEAGQDEEAAKAYGTSVHLFLEHLSAADPSDWPAL 981 Query: 974 REKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033 + L G VLQ P +L+ L + E+ Sbjct: 982 VDVLSDNGDPDLLRA--ASEAKTVLQDP------NLAHLFTPDSLAEV------------ 1021 Query: 1034 SQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 + +F L G ID + + +D+K+N A Sbjct: 1022 ----AVTAEFGSAR--------------LHGIIDRLVVSDTAVLAVDFKTNQTVPSQPAT 1063 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHR 1120 + + M A YT AL + Sbjct: 1064 CPEGILRQMGA---------YTHALKQ 1081 >UniRef50_D2MLK1 DNA helicase, UvrD/REP type n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLK1_9BACT Length = 1180 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 161/905 (17%), Positives = 312/905 (34%), Gaps = 140/905 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M D L + + + A AG+GKT + YL +L + + ++ Sbjct: 1 MQFTPSQQDALNI--EKHVCVTAGAGSGKTTVLVERYLEILRKGD--------VGPQNIV 50 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +TFTE A AE++ R+ ++E R+ + Q Sbjct: 51 AITFTEKAAAEMKERVIERLNEAGNITDRDNLLD-------------------------Q 85 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACAD---FWRRHCYPL 175 M A + TIH FC R+L F + + +++ D+ LL + + + Sbjct: 86 MSSAYISTIHAFCSRILREFPFLAKVPANFSILQGIDQKLLLQETLKETLNNIATNAEDE 145 Query: 176 PREIAQVVFETWKGPQALL---------RDINRYLQGEAPVIKAPPPDDETLASRHA--- 223 R + + + G + L+ RDI L+ E + P L R Sbjct: 146 HRPELTHLLQRYGGQKKLVEIFSTMIDKRDIIAKLRQEIYNDRNSPEIHADLEQRVLKKL 205 Query: 224 -------QIVARIDTVKQQWR----DAVGELDALIESS-GIDRRKFNRSNQAKWIDKISA 271 + + ++ V Q + V +L +E+ D K + Sbjct: 206 MSAIDVPEFIRCLNAVSQVALGRNLENVEDLTQQLEAQYATDPNSPEVPKLLKQFIDLIT 265 Query: 272 WAEEETNSYQLPESLEKFSQ-----RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD- 325 + + FL K P D+ + Sbjct: 266 IKSGAIAKSAFIGTKTDITGIETEINFLVSTVKKIKILPDLEKRVETDRTGDAETDNSED 325 Query: 326 ----------------LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV 369 + + K +G L F+D+ + LR E Sbjct: 326 KTDTVETDDDFLLSTVHDLLTLYTRVLSDYDEAKLSQGTLDFNDLQLKTRDLLRD--NEK 383 Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFT 429 + + R M+DE+QDT+ QY + + + L ++GDPKQ+IY FR AD+ Sbjct: 384 IRKELVDRHQYYMVDEYQDTNELQYELVMLLTNELKSANLFIVGDPKQSIYGFRDADVRV 443 Query: 430 YMKARS----EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ 485 + K + E +L N+RS ++ VN FS P + + + Sbjct: 444 FNKTKQKIVREDGKRISLTENFRSLRDVIGFVNYFFSHLMG-------PGNENEFEVEYE 496 Query: 486 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL-QAGQRGEALLMNGD 544 AL +T A+++ + + +Y+ + A +I + + A + +G Sbjct: 497 ALTQARHAKTNGAIEILIGQDGDPSANEYK-----LIAQRIENMITDAAETIRVRDKDGK 551 Query: 545 -DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RP++ DI++L+R+R + AL IP + + ++ E ++ L + Sbjct: 552 LSERPIQYDDIAILIRARTHLPDIEHALLEAGIPYL-TTGGIGFYQRQEIYDIWNYLNFL 610 Query: 604 MTPER-ENTLRSALATSMMGLNALDIETL-------NNDEHAWD-------------VVV 642 P +L + L + G++ ++ + + WD + Sbjct: 611 NNPSDSNISLAAILRSPAFGISDAELYEISLQKETKQEKKSFWDKTLDYQGCTEQLRCAI 670 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE 702 + + + R+ V ++ +++ + L G++R + + +L + E Sbjct: 671 DTLKTHIEFARRMPVNRLVGTIVNETGLIGTLRTGKQGKQRWANYQKLLDLARNFDGD-E 729 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV 762 + L ++ + Q +++ VQI+T+H +KG ++P+V LP + Sbjct: 730 NRQILPDFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVMLPRLDKKGQ 789 Query: 763 QEQAFYHDRHSFEAVLDLNAAPES-----------VDLAEAERLAEDLRLLYVALTRSVW 811 +Q + D L+ A + A + +AE RL YV TR+ Sbjct: 790 TDQEPFIDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKRLFYVGATRAED 849 Query: 812 HCSLG 816 L Sbjct: 850 RLILS 854 >UniRef50_Q13F62 UvrD/REP helicase n=3 Tax=Alphaproteobacteria RepID=Q13F62_RHOPS Length = 1115 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 238/1178 (20%), Positives = 412/1178 (34%), Gaps = 191/1178 (16%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 ++ L+EA AG+GKT +A L F + + + + +TFTE A +ELR Sbjct: 17 IENTLLVEAGAGSGKTSVMAGRVAVL---------FGKGVEPKNIAAITFTELAASELRL 67 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 RI + A L + E + + +A L A + D+ A TIHGF Q Sbjct: 68 RI----EKFTTALSLGDVPPDLTQAFPEGVPEAEKAN--LYRACQSFDQLACTTIHGFAQ 121 Query: 135 RMLNLNAFESGMLFEQQLIE-DESLLRYQACADFW---RRHCYPLPREIAQVVFETWKGP 190 ++ E+G+ +++ DE+ L + D W R +AQ+V G Sbjct: 122 SLIKPYPAEAGIDPGADIVDPDEAELAFGERYDAWLKQRLSVDDADGLVAQLVLADEGGG 181 Query: 191 QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESS 250 L+ ++ ++L+ AP A+ + +A + +++ DA+ + E + Sbjct: 182 LKLIEEVAQFLRKNRDARCAP-------AAWAEKTMADVIAAVKRFEDALAAVGFEEEDT 234 Query: 251 GIDRRKFNRSNQAKWIDKISAWA---EEETNSYQLPESLEKFSQRF-------------- 293 G+ R K+SA A + P F+++ Sbjct: 235 GLRCRTLIALVDILNPGKLSAGAPDTAALIAALNFPRHTSCFTEKGTRRQLRNGTKWQDA 294 Query: 294 -----LEDRTKAGGETPRHPLFE----AIDQLLAEPLSIRDLVITRALAEIRETVAR--- 341 L+ PL++ A++ LLA +I +++R AE++ + Sbjct: 295 AAKVGLKKADGKKTSDALVPLYDGCHNALETLLA---AIAGELLSRLCAEMQGLLLEWRD 351 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 KR L FDD+L L + A+ R+ ++DEFQDTDP Q I I Sbjct: 352 YKRDAALLDFDDLLFTARDLLAGHP--EVRRALSQRYRYVLVDEFQDTDPLQTEILWMIC 409 Query: 402 HHQPETA-------------LLLIGDPKQAIYAFRGADIFTYMKARSEVH--AHYTLDTN 446 E A L ++GDPKQAIY FRGAD+ Y+ ARS V A + N Sbjct: 410 GEDCEGADGAPLKRPLRPGALFMVGDPKQAIYRFRGADVNAYLAARSAVPQDARLAITAN 469 Query: 447 WRSAPGMVNSVNKLFSQ--TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 +RS ++ VNK F + +++A PV+ + + Sbjct: 470 FRSVEPILAFVNKRFERVLSEEAGQPGFAELSPVRPPNGDAPAVVALD---------VTL 520 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + GV + A A + Q + RP R DI++L + E Sbjct: 521 PQGASGVSAIRDAEAAALAELCCRLVGNLQ---VHDPETKELRPCRLGDIALLAPAGTEL 577 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 + + L IP V F E +++ L++ + P L + L ++GL Sbjct: 578 WRFEEVLEDRGIP-VATQAGKGFFRRQEIHDLIALVRTLADPRDTLALGALLRGPLIGLT 636 Query: 625 ALDIETLNND--------------------EHAWDVV----VEEFDGYRQIWRKRGVMPM 660 ++ + EH V +E R+ R + Sbjct: 637 ENELLDIMEGLPVDPDRPARLPTLTVGTNPEHIAHAVARKAIENLQALRRRIRITTPYAL 696 Query: 661 LRALMSARNIAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP 718 L MS ++ +L G ER + ++ E + + A R + + Sbjct: 697 LADAMSDFHVRPHLRQRFRTGAERAVANVDLFLEFAR--AYDVRGLRAFSRDM---TAKW 751 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVL 778 + + + R ++++ V ++T+H +KGLE+P+V +T DR + + Sbjct: 752 EDDEDQAEGRPDAEEESVSLITVHAAKGLEWPVVIPINMTGKPFAGGVLMQDRPNSRFSI 811 Query: 779 D-LNAAPESVDLAEA----ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 833 L P + ER E +RL YV +TRS L K+ + Sbjct: 812 PVLGTEPSDYAAMKTMNALERDRERVRLWYVGVTRSRDLLVL----PRHTELPKECWATL 867 Query: 834 HQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL 893 +G + A+ + + + + A + Sbjct: 868 VDLDVG----------------ALPAVDPESFGPAGTRAARIEANEQTREIFAAEAGRIF 911 Query: 894 QRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGT 953 WR S + G + R+D + VE+P + A G Sbjct: 912 AAREKIVWRQPS----RSEVDGEGEKPDIRIDHSEPPGPAEVEKPVVVGS-----AQRGV 962 Query: 954 FLHSLFEDLDFTQPVD-----PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVS 1008 LH L E++ + + + + G E EP E VL+ ++ Sbjct: 963 ILHKLMEEIINGEVGEHMSEIESRAALLKQHLGIEPTAEPQPVELAATVLKT------LA 1016 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 L + A M LP+ + + + LI + A G ID Sbjct: 1017 LPAIKALR--PRMVAELPVFGSVAGADEEVLISGQVDVVALDDA-----------GEID- 1062 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 ++D+KS+ D SA + +R Sbjct: 1063 --------VVVDWKSD---VDPSAAAVDHYRQQIGDYR 1089 >UniRef50_B0PD60 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PD60_9FIRM Length = 1174 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 234/1220 (19%), Positives = 409/1220 (33%), Gaps = 186/1220 (15%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + + +L P+ + LL+VTF+ AA E++ RI Sbjct: 19 GTVLVSAAAGSGKTAVLVERVVGRILDEKN------PVDADRLLIVTFSNAAALEMKQRI 72 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + EL A + L + + A + TIH FC + Sbjct: 73 MARMSELIAA---------------------HPEDRRLRRQQLLLGRAQISTIHSFCLEL 111 Query: 137 LNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRD 196 + N G+ + ++ L + D R + A F + RD Sbjct: 112 IRSNFQALGIASNTRAADERELEIMR--RDCARACIEQFLSDDADGGFSQLVELLSAGRD 169 Query: 197 INR---YLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW-RDAVGELDALIESSGI 252 R L ++A P ++ L + A + W R + + + Sbjct: 170 DRRVFDTLFSLYDFVRAHPFYNDWLDDKLAYYGEGVRAADSIWGRCILDYAKGALGHAAS 229 Query: 253 DRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR------------FLEDRTKA 300 R+ + + A + QL ++ + R E Sbjct: 230 LLRRALALAAQDEAVQAAYGAALSGDLLQLEQTFAALTARDWDRVQERLRLFTFEKLRPL 289 Query: 301 GGETPRHPLFEAID--------------------QLLAEPLSIRDLV--ITRALAEIRET 338 G++P+ +A+ + L + +R +V + Sbjct: 290 RGDSPQKSAVQALRKSARAIVEELRDRQFCASSAEFLDDVAFLRPMVSLLFDLTRAFDRL 349 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGE-----VLAAAIRTRFPVAMIDEFQDTDPQQ 393 +K+++ + F DM S L ++G LA + +IDEFQDT+ Q Sbjct: 350 FTEQKQQKYLMDFSDMEQYAISLLVKKAGPGYAKTELAQEAGALYDEVLIDEFQDTNAAQ 409 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--------HAHYTLDT 445 IFR + Q E+ L ++GD KQ+IY FR A +M+ + A L Sbjct: 410 EIIFRAV--SQNESNLFMVGDVKQSIYRFRQAMPELFMEKKKRFAPYDGKTFPAKIVLGK 467 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RSA + VN FSQ M EI + +G + Sbjct: 468 NFRSAQAVTGCVNFFFSQ----LMSGEIGEVDYNQEEALSPGASFPEGIEAGCTLRLIDA 523 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-A 564 + G D A+ A QI L+ G L+ +G R VR SDI VL+RS + A Sbjct: 524 SQYAGELDSTQLEARDVAEQIAGMLERGD----LVADGGVTRRVRPSDICVLLRSPAQKA 579 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 DALT +P V+ + + E ++ LL+ + P + SAL + + GL Sbjct: 580 QAYFDALTRRGVP-VWAEPKSGFLTSREIAPVVALLRVLGNPTLDIDFASALLSPLFGLT 638 Query: 625 ALDIETLN-----------------NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 A ++ + + V+ R+ ++R + Sbjct: 639 ADELTQIRLTDRRAPLYIAAAKAAEAGDPRAANAVDTIARLRRFASNATADAVIRRIYEE 698 Query: 668 RNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 + + A G+ R ++L + + + + ++ + I + Sbjct: 699 CDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLSGFIGFVDRLIDR--GGDFAPA 756 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ-----------AFYHDRHSFE 775 + +V++++IH+SKGLE+P+V+L +E F R FE Sbjct: 757 ASMSEQADVVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLNGNTLLHSELGFACVRRDFE 816 Query: 776 AVLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSLG----------------- 816 + P E ER L+E+LR+LYVALTR+ + Sbjct: 817 LMKQYTTVPMQALRLELERSMLSEELRVLYVALTRAKQRIVITGVVTKPEELLCALVSES 876 Query: 817 -----VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 + P R + D + +A L + A L L + A + Sbjct: 877 GTDGKLPPHQVRGANAYLDWILMAAARHPALAERFGLAGAPLDASEAPLTFELKAAADGE 936 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV 931 + + S E + L+R + + + +A + A+ Sbjct: 937 PDAEKTSETTAASPDEAALEALRRRLAFRYP---FEAQTKIPTKMAVSQLAGSAYAASYR 993 Query: 932 ASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV-DPNWVREKLELGGF--ESQWEP 988 S P GA G LH + D+ D + ++ GF + + Sbjct: 994 FSA--RPAFLQGDGLTGAQRGNALHKFMQFADYQAAARDASGEIARMAREGFLSRQEADS 1051 Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 + + + A + L S A+ E+ F L + Sbjct: 1052 IRPDRVRAFFSSRLAARIFS-----AKQVWRELRF---------------LAEAGERELG 1091 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 L ++G D VF E ++DYK++ + T + RY Sbjct: 1092 AYSALFTNGGETAIQGVADCVFLEEDGAVVVDYKTDRVK------TPDELRE-----RYR 1140 Query: 1109 LQYQLYTLALHRYLRHRIAD 1128 +Q LY AL L + + Sbjct: 1141 VQLALYRNALTEALGVPVKE 1160 >UniRef50_C4G1J5 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1J5_ABIDE Length = 1183 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 225/1214 (18%), Positives = 449/1214 (36%), Gaps = 189/1214 (15%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ A+AG+GKT + + LL P+ ++ELLVVTFT A E++ RI + Sbjct: 21 LVSAAAGSGKTAVLIERVMGRLLDE------RAPINIDELLVVTFTRDAAGEMKERIGAA 74 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 I + + + ++ + RL+++ + EA + TI FC++++ Sbjct: 75 ISKKLEEEVAKDANSDISLRLMKQYS--------------LLSEAHMSTIDSFCKKVVME 120 Query: 140 NAFESGMLFEQQLIEDESLLRYQAC--------------ADFWRRHCY----PLPREIAQ 181 N E+ + + ++D + + ADF Y + + Sbjct: 121 NFKEAEIDPSVRTLDDTEGVIIRKKVLEELLETEYEIRHADFINFVEYFARGKSDKILED 180 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 ++ + ++ ++L D + E ++ P E ++ V + R+ Sbjct: 181 LILQLYRFSESLP-DKESWFDREINKMEEPFKGSEF----EEILLDYCRIVLAELRNEAE 235 Query: 242 ELDALIESSG----------IDRRKFNRSNQAKWIDKISAWAEE------ETNSYQLPES 285 L S D F +A+ + + AE T + Sbjct: 236 RFVKLSLSPYGPVQYESTGSSDIELFTGLMKAESFENLLVLAENTGFARLSTKKTVDVDE 295 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEPLSIRDLV--ITRALAEIRETVARE 342 +K + + D K + E ++++ A ++ + R + + + E Sbjct: 296 EKKELAKSIRDGYKESFNKLKEDFLSENVEEIEASRKVTAGVLKELIRLVRKFDKAYIEE 355 Query: 343 KRRRGELGFDDMLSRLDSALRSESGE--VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 K +R L D L E G+ V A A + +F MIDE+QD++ Q +I I Sbjct: 356 KNKRNMLDISDWAHLALKVLLDEEGKPSVAAKAYKEQFAEIMIDEYQDSNLLQEKILTSI 415 Query: 401 WHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTLDTNWRSAPGMV 454 + ++GD KQ+IY FR A +++ ++ L +N+RS P ++ Sbjct: 416 SREADGQPNIFMVGDVKQSIYKFRQAKPELFIEKYNKYSQRNKGKRIDLHSNFRSGPEVI 475 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY 514 +SVN +F +T M + I A + R ++ L + + + Sbjct: 476 DSVNAVFERT----MTESLGGIVYDEAARLVKGRDDKLQNELNKTEILLFDKSNEIPEEL 531 Query: 515 Q-----STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ-VR 568 A + A +I+ + + ++ S+I++L+R+ E A+ R Sbjct: 532 LKLSDIELEAYMVAGRIKRLMVEKEG-------------LKYSNIAILLRTNVEWAESFR 578 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 L IP++ S+ F E Q M+ LL+ + P ++ L + L + + G + ++ Sbjct: 579 RILISEGIPAICESSV-GYFSAWEVQVMISLLKILDNPHQDLPLGTVLLSPIGGFDEQEL 637 Query: 629 ETL----NNDEHAWDVV-----------VEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 L N DE W ++ + F+ R V +++ L N Sbjct: 638 AELRINSNKDEDLWTILNLSENEKSLKFINWFNEQRSKLIFTPVHELIKELYEESNFYSY 697 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 + A GE R ++ + + + + S H +V ++ ++I + Sbjct: 698 VRAMPSGETRAANLDML--VYKAKAYEATSLHGVVHFV-RYIDKLRKYEVDFGEAGAGGA 754 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAE 793 V+I++IHKSKGL+YP+V++ + + + R S +L + ++ E Sbjct: 755 EAVRILSIHKSKGLQYPVVFVSGMAKSMNNQDS----RASMVIQAELGIGIDYFNIETRE 810 Query: 794 R-----------------LAEDLRLLYVALTRSVWHCSLGVA------PLVRRRGDKKGD 830 + +AE++RLLYVA+TR+ L LV D++G Sbjct: 811 KKTTILKKMLAGKIRLENVAEEIRLLYVAMTRAEDKLLLTAGLEDVEDKLVSWEHDEQGY 870 Query: 831 ------TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD--DIAWQTAQTGDNQPWQVND 882 + A+ L+++ C + L D D A + + ++ Sbjct: 871 MSLSKANSLLDFAMPALIKEKNEGRLTIAVQCAKELVDSKMDEAAEKEVLESDITKLISS 930 Query: 883 VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV------E 936 + + + + + + + + + + RL ++ + V E Sbjct: 931 LPEPDGYEAIKEMISREKDYIYPFKEAVELKSKMTVSEIKRLHLEEEEIGEAVYNLPHKE 990 Query: 937 EPTLTPH--QF-------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWE 987 P P+ F +GA+ GT HS+ +DF ++ + + + Sbjct: 991 APEFEPYIPDFMSKEPEETKGAARGTLYHSILSRMDFGNISGKETFKDYIAKLNIDKK-- 1048 Query: 988 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 1047 + E ++++ L K E Y + + + S+ L R+ + Sbjct: 1049 -ITNEELSSI-------------DLRHFAKFFESNLYKRMRQAFLNSK---LYREAPFVI 1091 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1107 + + +++G ID F L+DYK++ + Y +Q ++ RY Sbjct: 1092 GIDREINTEKETVLVQGIIDAWFTENEDVILVDYKTDRV------YGKQGEEELIR--RY 1143 Query: 1108 DLQYQLYTLALHRY 1121 LQ Y AL R Sbjct: 1144 KLQLDNYAEALSRI 1157 >UniRef50_Q1Q4K9 Similar to ATP-dependent DNA helicase subunit AddA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4K9_9BACT Length = 1198 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 210/1211 (17%), Positives = 434/1211 (35%), Gaps = 174/1211 (14%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 ++ A AGTGKT + L LLL + P+ +++ +TFTE A +E++ R Sbjct: 48 HKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPIL--KIIALTFTEKAASEMKIR 105 Query: 76 IRSNIHELRIACLR--ETTDNPLYERLLEEI-----DDKAQAAQWLLLAERQMDEAAVFT 128 + + ++ A ++ + ++ ++ + + + MD+A + T Sbjct: 106 LMEELEKIVAAMKGICRPEESSQVNNFISDLQTTYHTTYSEIERRAVQSLADMDKAMICT 165 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWK 188 IH F +L + ESG+ + DE + W L + TWK Sbjct: 166 IHSFAAYILRMFPIESGVAPGFTV--DEGSVFEDLFEKEWPDWL-ELELSLTSKNTVTWK 222 Query: 189 GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ----------WRD 238 + + ++ A R + +DT+ Q+ Sbjct: 223 NV----------------LTRTELETIKSFAKRLSDFTIPLDTLTQKTGDPAVLDVLLNS 266 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 ++AL+ G K + + ++ + E +T + SL + + Sbjct: 267 YCDSINALLLKCGKPDNKL----LLQLQEFLTIFNELKTQGFHYLSSLHYNFGKTISKAK 322 Query: 299 KAGGETPRHPLFEAIDQ---LLAEPLSIRDLVITRALAEIR---ETVAREKRRRGELGFD 352 E + + + LL + + + IT AL + +T + +G + FD Sbjct: 323 SGWEEADVLVAQDIVKKCRILLRKLQRVDESFITTALNLVLPFCKTFRQTYLSQGYISFD 382 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA---- 408 +L+ + L++ + + +++ F ++DEFQDTDP QY I + + Sbjct: 383 GLLTLARNLLQNNAYRSIRTSLKKNFSAILVDEFQDTDPIQYDIILFLSEMVNHHSDTIH 442 Query: 409 --------LLLIGDPKQAIYAFRGADIFTYMKARSEV---HAHYTLDTNWRSAPGMVNSV 457 L ++GDPKQ+IY+FR ADI Y ++ A +L N+RS G+VN+V Sbjct: 443 GIPLEPGKLFIVGDPKQSIYSFRRADIEAYEHVVKQICNNEAPLSLLENFRSHSGIVNAV 502 Query: 458 NKLF-SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME-GESCGVGDYQ 515 N LF + + +IP+ + + ++ P ++ ++ ++ G Sbjct: 503 NDLFGEKIITEQQGLQPKYIPIHAK----------RIQSDPFQRIEIISVSDTNGEELTA 552 Query: 516 STMAQVCAAQIRDWLQAG---QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 + A I W++ G + + ++ DI++L+RS + ++ Sbjct: 553 EAAREAEADWIAKWIKNNVFYDNGGDTSADAATSYKLKYKDIALLLRSFTQIRPYVESFK 612 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 +IP + + T E + + LL+ + P L L + GL +I L Sbjct: 613 EHDIPFI-AEGEKYFYTTQEVIDFMNLLRTIENPYDTIALVGTLRSPFAGLTDNEIYLLK 671 Query: 633 -----------NDEHAWDVVVEEFDGYRQIWRKRG----VMPMLRALMSARNIAENLLAT 677 +D D + +F + + + R V ++ +++ A + Sbjct: 672 INDLLDYRKTISDNIDIDATIGDFYSFLRKYNVRSRIIPVSHLISEIINDPRFAGITASA 731 Query: 678 AGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK--H 734 GE++L ++ + Q S + + ++I E S SD+ Sbjct: 732 WQGEQKLANLKKFYRTACKLEQIQGISLKHFINNMKKYIDEAREEGESPL----SDETLD 787 Query: 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAER 794 +V+I+TIHKSKGLE+P+V L + +E + D N + + L + E+ Sbjct: 788 VVKILTIHKSKGLEFPVVILGNLHGEAKKE-----NETLDSVAFDWNTSTTGIVLGKGEQ 842 Query: 795 L------------------AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 E+ R+LYVA+TR+ L A + Sbjct: 843 QLRNLQSIILENKINERTWEEEKRVLYVAMTRAKERLILTGALKDNDKSYIGLIMKSLSD 902 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW-QVNDVSTAELNAKTLQR 895 A L + +R + + +I + + + T +++ + R Sbjct: 903 AYDISLNNEPETPSGHVRKIV--FGNSEIFLENFNYTGARRFVSKTAEKTWDIDWNSFVR 960 Query: 896 LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFL 955 + D + + ++ ++ L + + + Q A+ G+ Sbjct: 961 IWNDR-KQSMFAETEKPLFTSPSALSEEISPVHYETPTHNKHINSAEIQQEYAAAIGSLC 1019 Query: 956 HSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLS 1013 H + E DF + + + + + + + I L Sbjct: 1020 HQILEKWDFQGTLQALYDLITSSVTIHFTNASLHHTIIHLIKTEAVTILTAF-------- 1071 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 F+ L +++ L P L + + +++G ID+++ E Sbjct: 1072 ---------FHSKAYNELKNARI---------LGREIPILLHWEGQ-IMRGTIDIIYEFE 1112 Query: 1074 GRYYLLDYKSNW---LGEDSS---------AYTQQAMAAAMQAH-----RYDLQYQLYTL 1116 + + DYK+++ + ++ + A++ + +Y Q +YT Sbjct: 1113 NQIIIADYKTDYASSIEDNPALTNTCHEEDAFSNAEKINMNISSPTYTPKYHHQKTIYTE 1172 Query: 1117 ALHRYLRHRIA 1127 A+ R L+ Sbjct: 1173 AVKRCLKINNP 1183 >UniRef50_D1PLS3 ATP-dependent deoxyribonuclease subunit A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS3_9FIRM Length = 1160 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 225/1190 (18%), Positives = 383/1190 (32%), Gaps = 170/1190 (14%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + + ++ P+ + LL++TFT AA A+LR I Sbjct: 22 GSLLVSAAAGSGKTRVLVERVVGMITD------PQHPVEADSLLIMTFTNAAAAKLRADI 75 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + + A L A++ T+ FC Sbjct: 76 ATRLADEVRAHPGNVRLRRQQLLLQR---------------------ASIGTVDAFCLHF 114 Query: 137 LNLNAFESGMLFEQQLIEDE----------SLLRYQACADFWRRHCYPL------PREIA 180 + + + + + E+ + L +A D R L + Sbjct: 115 VQQHFAALDVPPDFETAEEADLARIEQEVLADLLEEAYEDPDFRAFADLYDRGRTDQTAG 174 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 V E + ++L + PP +I Q +A Sbjct: 175 NAVLELYHFSRSLPHPMQALQSFADQWQNGEPPQTTPWGKDLLRIALDRARGAQALLEAG 234 Query: 241 GE-----------LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE-- 287 A+++ + Q D A EE S++ ++ Sbjct: 235 ARTAARDEAADAAYTAVLQDDVSRVEWLCQKLQQGDWDAAVAALEELGGSWRKAGRIKGG 294 Query: 288 ------KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA- 340 F+ L DR K R + E R + AL I + A Sbjct: 295 KDSNPVAFAASELRDRAKKQIAALRTDFLLCTAEEYQE-DRRRAAPLVAALVRITQRFAD 353 Query: 341 ---REKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 K L + D L + G L + R+ ++DE+QDT+ Q Sbjct: 354 ACFAAKCEEKLLDYADFEHLTLDLLIAPDGSRTPLCHTVSERYSAVLVDEYQDTNALQDA 413 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS---------EVHAHYTLDTN 446 I+ + + + L +GD KQ+IY FR AD ++ + A LD N Sbjct: 414 IYFALASPEAD-NLFFVGDIKQSIYRFRQADPAVFLGKQQCWQPYPQPAPQPATLALDAN 472 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RSAP ++ +N LFS F + + G Q L + P + Sbjct: 473 FRSAPQVIEGINYLFS----VFFSEGLGGVTY---GDGQRLVVGKPDVSYPGLC-----E 520 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 G + A A +I +Q G + + RP R D +L+R R + + Sbjct: 521 VDVLDGADAAGDAAGIAQRIAGMMQEGFA----VRDKTGTRPCRYDDFCILLRGRADFSI 576 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 +AL EIP V+ + + + LL+ + P ++ L + L + M Sbjct: 577 YEEALRAAEIP-VFADTAADLLDAPHIRPFAALLRVIDNPAQDIPLAAVLLSPMFPYTPD 635 Query: 627 DIETLNN--------------DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE 672 D+ +L + + E YR++ R V +L L++ Sbjct: 636 DLVSLRRACPQGSLYGAVLYGGQPRFAAFTESLAEYRRLARTLPVDRLLEELLARTGYLA 695 Query: 673 NLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 + A G R D+L AG ALVR + + +Q ++ Sbjct: 696 AVGALPDGARCREDLLTFVTWAGGAGR--AGLSALVRAMDSAAA---NGGLNQSGGGQTR 750 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY----HDRHSFEAVLDLNAAPES-- 786 V I+T+H+SKGLE+P+V++ + Q A H R +L + + Sbjct: 751 PGCVSIMTVHRSKGLEFPVVFVANTAHQFNQSDAIRPVLTHSRLGVGVMLRAGKSAKRYK 810 Query: 787 -------VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 E L+E++R+LYVALTR+ + + K A G Sbjct: 811 TLPYAALAQAIRTETLSEEMRVLYVALTRAQDALIVTIPLKKTDSALKTPALCAAAEATG 870 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD 899 +G A L T + + D W + ++ L A Sbjct: 871 PEAMQGMSSWAGWLLTAVLLHPESDALWAHTPLLPHHLPTKVPLTVRLLPAPEAMPEQPP 930 Query: 900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV------------ASVVEEPTLTPHQFPR 947 V L++ PR + +E P Sbjct: 931 CLEVQPDVSLRRALEETFAWHNPREKLQKIPAKVSVSAVTHGARPVALERPAFLQKSGMT 990 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGV 1007 GA GT +H+ + + F P ++ +++ + L E + P E+GV Sbjct: 991 GAERGTAIHAFLQSVPFDGPAPD--LQAEVQRQKDLRLLDADLAEKLDLERVRPFFESGV 1048 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 +AR E F + P S P +++G D Sbjct: 1049 WRRIRAARRVLREEPFITAL-----------------PASQVAPEAGQSDAEVLVQGIAD 1091 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 LV + + DYK++ + Y ++ Y Q QLY A Sbjct: 1092 LVLVFDDHAEICDYKTDA-SREPEFYKKE----------YAAQLQLYRHA 1130 >UniRef50_C0EHH1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHH1_9CLOT Length = 1188 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 243/1220 (19%), Positives = 430/1220 (35%), Gaps = 190/1220 (15%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ ASAG+GKTF +++ + L A R + LLVVTFT AA E+R RI Sbjct: 33 GTLLLSASAGSGKTFVLSSRVVYKL------AHRERETRADRLLVVTFTRAAAKEMRTRI 86 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + EL DD Q LL + A + TI FC + Sbjct: 87 TAKLDELVARF----------------PDDAKLQRQKLL-----LSRAKITTIDSFCADL 125 Query: 137 LNLNAFESGMLFEQQLIED------ESLLRYQACADFW---RRHCYPLPREIAQVVFETW 187 + N G+ + ++ ++ + + D++ + L + Sbjct: 126 VRDNFDRLGLSPDFRIADETELAQIQDEALDELFEDYYSQGDKEFAALSDSFSLKDDSRL 185 Query: 188 KG--------------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR----- 228 KG P L + R L GEA + P E A I Sbjct: 186 KGIVLSIYSRIRSNPFPLEWLWESFR-LYGEADELDTTPWGLELRAQASRAIDHCTELYR 244 Query: 229 ------------IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 DT++ A+ +L ALIE +D ++ + K ++ Sbjct: 245 RGFAFTQQNPVVYDTLRPYHEAALEKLAALIEE--LDGCGWDEARGVLKAFKFPRKPVKK 302 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR 336 + ++L + + L ++ E + ++ V+ R L E+ Sbjct: 303 PEGFD--KTLSEEEDEKFLKPARNAVNGILKELLTCSEEEFWEDIRLQQPVL-RKLCEVV 359 Query: 337 ETVARE----KRRRGELGFDDM-LSRLDSALRSESGEVLA----AAIRTRFPVAMIDEFQ 387 E + KR + L F D+ + + L G++L A+ + ++DEFQ Sbjct: 360 ERYSERMDASKREKNILDFPDLGIFAIRLLLERREGKLLRTPVGEAVSSEIDEILVDEFQ 419 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--------HA 439 D + Q +F + + ET L L+GD KQ+IY FR A +++ R+ A Sbjct: 420 DVNQMQDMLFEAV--SKDETNLFLVGDIKQSIYRFRQASPEIFLQKRARYADFSTGSYPA 477 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM 499 TL N+RS P + VN LF Q + G+ + LR P Sbjct: 478 RLTLAENFRSRPEVTGCVNYLFRQLMSEQLGE-------LDYGEGEQLRAAASYPPHPDA 530 Query: 500 KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 + L ++ + +A R L + G + RP SD ++L+R Sbjct: 531 QAELHLIDTAADDSDEGRVAIEANYIGRKILSMLRNGYPVTGEDGKLRPCTLSDFAILLR 590 Query: 560 SRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 S+++ A + L L + V+ N F + E ML LL+ + P ++ L S L + Sbjct: 591 SKKDKAEVYAEQLMHLGL-DVWTENTSGYFRSREVSLMLNLLRVIDNPLQDIPLLSVLLS 649 Query: 619 SMMGLNALDIETLN--------------NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRAL 664 + G ++ L +D V+ R+ V +++ + Sbjct: 650 PLYGFTPDELAELRILDRRAPLYLCVTASDSGHCREFVQSLSRLREAAAVTSVEKLIQKI 709 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASS 724 A E++L ++ + L AG + S L +L ++N Sbjct: 710 YDETLFYALFGAMESSEQKLANLRLL--LSYAAGYERGSGRGLSGFLRYIDTAEEANRDF 767 Query: 725 QQMRLESD-KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ-----------AFYHDRH 772 + + ++ V+I+T+HKSKGLE+P+ ++ Q F Sbjct: 768 ECANIFTENSSAVRIMTMHKSKGLEFPICFVANCAGRFNQRDLSSVYCLSNTHGFAMKLT 827 Query: 773 SFEAVLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 E + P E +R L+E++R+LYVA+TR+ L +A ++ +K Sbjct: 828 VPELLKQYPTLPYLAAQLENKRALLSEEMRVLYVAMTRAREKLILTIAADNPQQLVQKAA 887 Query: 831 TDV---HQSALGRLLQKGEPQDAAGL-------RTCIEALCDDDIAWQTAQTGDNQ-PWQ 879 + + L D + + + D ++ Q+GD + P + Sbjct: 888 VQIVEGERLPFYPLYSAHSYADWLLMGLLRHPSAGDLRSQADSGLSPYEPQSGDARCPLK 947 Query: 880 VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR-----GHGIAQDLMPRLDV----DAAG 930 V + Q P + + L+Q H ++ +L V + + Sbjct: 948 VVLDGQEYGEQELEQAQPAPEADEETLAALRQNLGYRYAHAALSEIPAKLSVTQIAEHSR 1007 Query: 931 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKLELGGF--ESQWE 987 AS+ P + A GT H + DF + D +L GF Q Sbjct: 1008 PASLTRRPQFERERGLTPAERGTATHQFIQFADFARAADDLEAEISRLRENGFIDPQQAA 1067 Query: 988 PVLTEWITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPL 1046 V + + ++ +PL + + A + E++F+ + Sbjct: 1068 SVDRKGLESLFHSPLAQR------IRAARRVYRELDFFYDL-----------------DA 1104 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 S P E + +++G D V ++DYK++ A + R Sbjct: 1105 SEIFPEQETDGEKILVQGIADCVLDEGESLVIIDYKTDR-----------ATREQIAG-R 1152 Query: 1107 YDLQYQLYTLALHRYLRHRI 1126 Y Q LY A+ L + Sbjct: 1153 YRGQLMLYKRAVEAMLGKPV 1172 >UniRef50_C8S137 Double-strand break repair helicase AddA n=1 Tax=Rhodobacter sp. SW2 RepID=C8S137_9RHOB Length = 1090 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 236/1161 (20%), Positives = 414/1161 (35%), Gaps = 174/1161 (14%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AG+GKT + RLLL + +L +T+T+AA +E++ R+ Sbjct: 19 STWLAANAGSGKTRVLTDRVARLLLE---------GVEPGRILCLTYTKAAASEMQNRLF 69 Query: 78 SNIHELRIACLRETTDNPLYERLLE-------EIDDKAQAAQWLLLAERQMDEAAVFTIH 130 + + D+ L L + + + +A Q A + TIH Sbjct: 70 RRLGGWAM-----LEDDALRAALADLGVAGAVQPETLGKARQLFARAIETPGGLRIQTIH 124 Query: 131 GFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFETWK 188 FC +L E+G+ + ++D SLLR + + + P +A + Sbjct: 125 SFCASLLRRFPLEAGVSPQFTELDDRAASLLRDEIVDELAE---FGAPEAVADLARAYTG 181 Query: 189 GPQALL--------RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + L R R L P T + AQ+ + +W V Sbjct: 182 EDFSALAAEVAGQRRWFERPLNDADCRALFGLPKGLTAETLLAQV---FLGGEAEWLAQV 238 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 + A ++ + R+ + + + ++ A E P++ E F+ + TKA Sbjct: 239 ASVMATGSANDVKAADKLRALRLE-VPDLAVLAALEDVLLTGPKAAEPFTAKLGSFPTKA 297 Query: 301 GG----------ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELG 350 + + A + +A + R ++ A A K RG L Sbjct: 298 TQPKLGPLLPRLQDLMRRVEAAREDRMALLAADRTRILHAFAAAFLPRYAARKLARGALD 357 Query: 351 FDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH------ 403 FDD+++R + L S + + + ++DE QDT P+Q+ + R + Sbjct: 358 FDDLIARAKALLTDPSVAQWVLFRLDGGIDHILVDEAQDTSPEQWDVIRLLAQEFTAGRG 417 Query: 404 --QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAP 451 + ++GD KQ+IY+F+GAD+ + +S A+ L+ ++RS+P Sbjct: 418 ARDVPRTIFVVGDKKQSIYSFQGADVGAFEAMQSLFRANLAQVNTPLQGLELEYSFRSSP 477 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ-ALRFVFKGETQPAMKMWLMEGESCG 510 ++ V+ F T A + ++ I KSA Q L + +P W + Sbjct: 478 LILRLVDLTFDATTHADVGGKVNHIAFKSAMPGQVELWPALEPSGKPEDGDWFDPVDLIS 537 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-AAQVRD 569 + + + AA+I++ + AG + + RPV A D VLVR R A++ Sbjct: 538 DEHVAARLGRQVAARIKNMIDAGVQ----IPVDGGERPVHAGDFLVLVRRRSAVFAEIIR 593 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 A +P + ++R + + +++ LL + TPE + L L + ++G + Sbjct: 594 ACKAAGLP-IAGADRLKLGGEMAVKDLASLLAFLATPEDDLALAEVLRSPLLGWTEGQLY 652 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 TL + + + + ++ E L G R L L Sbjct: 653 TLAQGRTGYLWQALRQADAPETLAILHDLRDQADFLRPFDLIERALTRHDGRRLLLARLG 712 Query: 690 ----------ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 +S+ L + S + WL ++ + + +S ++++ Sbjct: 713 PEAEDGIDELLSQALAYERNDVPSLTGFLSWLQ-------TDDVEVKRQADSAGRRIRVM 765 Query: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPE---SVDLAEAERL- 795 T+H +KGLE P+V LP + +++A + + A + + EA RL Sbjct: 766 TVHGAKGLEAPIVILPDTADHAPRDRAELYRLADGSMIWKTAAEDSPAPTREAREARRLA 825 Query: 796 --AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 AE LRLLYVA+TR+ C L VA + G D + A Sbjct: 826 AEAESLRLLYVAMTRA--QCWLMVAAAGKVSGASWHDR-----------IRAGMMAAGAE 872 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 L W + A ++A L LP QR Sbjct: 873 AAVGGGLILRGGVW------------PENAPRAGISAADLPALPD----------WAQRH 910 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV 973 + L G A V+ P GT LH L E L P + Sbjct: 911 APVPPTAEKPLSPSDLGGAKVL--PGDLAGDTAAAKLRGTRLHLLLEHLPGQDPALWPAL 968 Query: 974 REKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033 E L E++ L T VL AP L+ + A + E+ Sbjct: 969 AESLLA---EAEDRLALLAEATTVLTAP------DLAPIFAADALKEV------------ 1007 Query: 1034 SQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 ++ + D L G ID + R +DYKSN + +SA Sbjct: 1008 ----SVTAEIDGKR--------------LYGTIDRLILLPDRVLAIDYKSNSVIPATSAQ 1049 Query: 1094 TQQAMAAAMQAHRYDLQYQLY 1114 + + M+A+ L Q+Y Sbjct: 1050 VPEGLLRQMRAYAAAL-AQIY 1069 >UniRef50_B0RA36 Putative helicase n=1 Tax=Halobacterium salinarum R1 RepID=B0RA36_HALS3 Length = 1211 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 221/1235 (17%), Positives = 408/1235 (33%), Gaps = 219/1235 (17%) Query: 15 LQGERL-IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELR 73 +QG + I A AGTGKT T+ Y+ +L LT E ++ +TFT A AEL Sbjct: 19 VQGRNVAITAGAGTGKTTTLTERYVTILAENPS-------LTPENIITITFTRKAAAELT 71 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 R+R +++ E D +A +++ V TIH FC Sbjct: 72 ERVREEVYDRL------------------EAVDSPEAYNRWRNVLDDLEDGYVHTIHAFC 113 Query: 134 QRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQ 191 R+L A E+ + +++++ + L+ + +F R+ + ++ + Sbjct: 114 ARLLRERAVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDDDDVALLAQLWGRDQLVD 173 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSG 251 L ++ Q E+ + D + ++V +D + L + + Sbjct: 174 VLAGLLDERPQSESVLEAWRDADVDDYVDICWEVVCDLDVADARQTLYADGLLEQLRTVA 233 Query: 252 IDRRKFNRSNQAKWIDKIS-----AWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 + + A + P ++ E K G Sbjct: 234 GRVDREGAIADEDGLRAYRTLTKVATTLPDDPQESDPRDCQRAILELYEACEKKNGGLYS 293 Query: 307 HP-------------------LFEAIDQLLAEPLSIRD-----------------LVITR 330 L + ID ++A D L + R Sbjct: 294 SSGYVVGDRDDWGEHGDVYDDLKDTIDAVIAAVEPHADAVETTPGELEANSAHYALALMR 353 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 A ++ EK RR L F D++ LR+ + + +R +F M+DEFQDTD Sbjct: 354 AFDDVLAAYTAEKDRRDTLDFPDVIETTLEFLRA--NDAVTERLREQFAAVMVDEFQDTD 411 Query: 391 PQQYRIFRRIWHHQPET--ALLLIGDPKQAIYAFRGADIFTYMKARSEV----------- 437 P+Q+ + + + T + L+GD KQ+IY FRGAD+ T+ AR E+ Sbjct: 412 PRQWELVKLLTGVDEGTASNVFLVGDEKQSIYGFRGADVTTFGNARRELQTVNEARGVDD 471 Query: 438 --------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF 489 L N+R+ ++ +N+LF P+ Q R Sbjct: 472 VPDGEAESPTALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAPPQELTTQRDRI 531 Query: 490 VFKGETQPAMKMWLMEGESCGVGDY---------------QSTMAQVCAAQIRDWLQAGQ 534 +++ + ++ + AQ AA++ Sbjct: 532 EDIEGLTGSVEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALAARLTHLFD--D 589 Query: 535 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 + + R D ++L+R R + + AL +IP + ++T E Q Sbjct: 590 PPQVQDPDTGVHREATPDDTAILLRRRTHLDRYQRALEEYDIPYTVVGGV-GFYDTPEVQ 648 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIE-TLNNDEHAWDVVVEEFD------- 646 + LL+ + PE + +L L + + G + + + WD + E D Sbjct: 649 ALTNLLRVLGDPEDDVSLYGVLRSPLFGFADDRLAPAVAEADSVWDALAETDDPQLADAF 708 Query: 647 GYRQIWR---------KRGVMP---MLRALMSARNIAENLLATAGGERRLTDILHISELL 694 WR + GV+P +L ++ ++ A G + + ++ + + Sbjct: 709 DLLSTWRTLSGCAAPSENGVLPWNRLLSRVIDDTGYLASVSADERGRQAIANVEKFRDQV 768 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 + H L + + + + + + D V+I+TIH +KGLE+P+V + Sbjct: 769 RTWSEN--GVHTAAGLLHRIDRQAEIDPREGEADIPGDAEGVRIMTIHSAKGLEFPIVTV 826 Query: 755 PFI---------------------TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA- 792 P + T+ A ++ A E D Sbjct: 827 PDLGSDLNFGRSVDDHGYVRLVDGTDDAPPVPAVGGPDPGDAFSIEKTAVHEYADRQSRP 886 Query: 793 ERLAEDLRLLYVALTRSVWHCSLG---------VAPLVRRRGDKKGDTDVHQSALGRLLQ 843 + AE RLLYVA TR+ H L + D D + + L Sbjct: 887 QERAESKRLLYVACTRTRDHLLLCGTHDIDVDESGAIELGEPAAFDDADRWRDWVQPALL 946 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 G A +R D+ ++ + W +D + ++ P Sbjct: 947 DG-ALVAEAIRDGQARGEMDEASYTVRRPPRPVDWHTDDDAVDPALEISIPSPP------ 999 Query: 904 TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD 963 S + ++ + + D + E L+P F GT +H + E Sbjct: 1000 -SLAPAKRIAATTLVNAVADASTDGHSYSQREESAGLSPTTF------GTVVHRINELRP 1052 Query: 964 FTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 + + + +L E E + E + A +EF Sbjct: 1053 PRD--EWSTLIHRLSRMTGEVPTEADVREAVDHAADA--------------------VEF 1090 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 + SQL + ++ ++ + G+ID + ++++DYK+ Sbjct: 1091 ---VDHIESGSQLQEVHDEYSVVARI--------DESRIAGYIDRLLVMPDAFHIIDYKT 1139 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 N L +S A Y Q Y LAL Sbjct: 1140 NDLSATTSD---------ELADHYRPQMLAYALAL 1165 >UniRef50_A7HPC8 Double-strand break repair helicase AddA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPC8_PARL1 Length = 1156 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 228/1179 (19%), Positives = 396/1179 (33%), Gaps = 168/1179 (14%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AG+GKT + RLLL + +L +TFT+AA AE+ R+ Sbjct: 24 SVWVSANAGSGKTHALTTRVARLLLAGT---------DPQRILCLTFTKAAAAEMSARLY 74 Query: 78 SNIHELRIACLRETTDNPLY-ERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + E + + L E + A Q A + TIH FC+R+ Sbjct: 75 KRLGEWAMMSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPGGLKIQTIHAFCERL 134 Query: 137 LNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 L E+ + + +++++ + L + RR + Q + L Sbjct: 135 LGRFPLEADVPPQFEILDERAAQELMDEVRDAVLRRAGGEADTALGQALSHVVSRVDELA 194 Query: 195 -RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG-ELDALIESSGI 252 + + + + LA HA I + + + E+ AL E++ Sbjct: 195 FGKLLKEVTDQRGNFAKMMDRFGGLAGIHAAIRIALSVGADETTPGIRVEIAALPEAAMH 254 Query: 253 DRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF-- 310 + + S + A E+L+ + FL K L Sbjct: 255 NAAEVLASGTKTDVKCAEALRAFLGARASRAENLDTYLGIFLTKEMKPRARLVTAALAKK 314 Query: 311 --EAIDQLLAEPLSIRDL--------------VITRALAEIRETVAREKRRRGELGFDDM 354 + +LLAE I L I EI ET + K R L +DD+ Sbjct: 315 HPDVEQELLAEQERIIRLHARLRAIGVAEATEAIVTLAVEILETFDKAKHARALLDYDDL 374 Query: 355 LSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--------QP 405 +S+ L + + + +IDE QDT P+Q+ I R+ Sbjct: 375 ISKTRDLLTMRAMAPWVLYKLDGGIDHILIDEAQDTSPEQWDIIARLADEFLSGSGARGV 434 Query: 406 ETALLLIGDPKQAIYAFRGADIFTY----------MKARSEVHAHYTLDTNWRSAPGMVN 455 + +GD KQ+I++F+GAD + +KA + + L ++RS P ++ Sbjct: 435 VRTIFAVGDEKQSIFSFQGADPARFDDMKIYFERRVKASEQRWDYVPLTRSFRSVPEVLA 494 Query: 456 SVNKLFSQTDDAFMFREIPFIPVK------SAGKNQALRFVFKGETQPAMKMWLMEGESC 509 +V+K+F + + AG + E Q A W + Sbjct: 495 AVDKVFESLKARSGLTASGNLDIHIAHRELDAGLVEIWELEEPDEGQEASP-WDAPLDYM 553 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA-AQVR 568 + +A AA IR+WL + E L+ G RP+RA DI +LVR R ++ Sbjct: 554 TEAAPMAKLAARIAATIRNWLDS---KEVLISKG---RPIRAGDILILVRRRNAFVGEMV 607 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 L L +P V ++R + E L ++L L + V+ PE + TL + L + G ++ Sbjct: 608 RHLKELGVP-VAGADRMVLTEQLAVMDLLALARFVLLPEDDLTLATVLKSPFAGFTEEEV 666 Query: 629 ETL--NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA-----RNIAENLLATAGGE 681 L N W + E+ + + LR L A ++L GG Sbjct: 667 FDLAWNRKGTLWQSLKEKATRNPRYAEAAAFL--LRLLERADYEPPYEFFAHVLGGEGGR 724 Query: 682 RRLTDILH----------ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 RL L +S L+ + A V WL + +S + ++ Sbjct: 725 TRLLARLGPEAADPIDEFLSLALEFERKHPPALEAFVHWLER-------GSSEIKRDMDQ 777 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-------YHDRHSFEAVLDLNAAP 784 + V+++T+H +KGLE +V++P + + Sbjct: 778 GRDEVRVMTVHGAKGLEAEIVFMPDTCAAPGGSHDPALLSLPALEQDGPKLLLWPVRKKD 837 Query: 785 ESVDLAEAERL------AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 E A A L AE RLLYVALTR+ + + V ++ Sbjct: 838 EDEVSAGARALHREIQAAEYRRLLYVALTRARDRLYISGYRNATPPSSECWYEMVCETL- 896 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPG 898 L D + W+ Q + E +A Sbjct: 897 -------------KPAAREIVLPDGRMVWRIEGEQRRQVDSKAPSAAEEPSAPPEWAHRD 943 Query: 899 DNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSL 958 T +A +P D++ V S + + G+ +H L Sbjct: 944 APLEPT-------PSRPLAPSRLPPEDLEEPSVLSPLAGDNTNRFR------RGSLIHRL 990 Query: 959 FEDLDFTQPVDPNWVREKL---ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSAR 1015 E L +P + + G + + + + VL +++ + + Sbjct: 991 LESLPDMEPAERRAAARRFLAQPAHGIDEAAQNEIEAAVFRVL------DDATIAHVFGK 1044 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 + E+ P++ + LI G ID + E Sbjct: 1045 GSRAEV----PVAGTIELGGRPLLIA----------------------GQIDRLCVTEDS 1078 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 ++DYK+N + A M A+R L +Y Sbjct: 1079 VTIIDYKTNRPPPQTLEAVVPAYIGQMAAYR-ALLAAIY 1116 >UniRef50_A6WGC8 UvrD/REP helicase n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WGC8_KINRD Length = 1123 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 242/1182 (20%), Positives = 395/1182 (33%), Gaps = 140/1182 (11%) Query: 1 MSDVAE---TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVE 57 M+ + D +R +EA AGTGKT + A + ++ A V Sbjct: 1 MNSAPQDQSARDRVRTSHAETLFVEAGAGTGKTTALVARVVHMV-------ATGHLQHVG 53 Query: 58 ELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLA 117 EL +TFTE A +ELR RIR + + R TT P A Sbjct: 54 ELAAITFTENAASELRSRIREGLEDAARGEHRGTTYEPQERDCCRTAAAALDDA------ 107 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPL 175 A+ T+HG R+L E+G+ + L A DF Sbjct: 108 -------AIGTLHGTAIRILQEAPLEAGLPPGFAVASATGGDELDDDAWEDFLADLLADP 160 Query: 176 PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA----QIVARIDT 231 T + LR L G +++ P + L A + + Sbjct: 161 AVADHVTAAFTLGLSTSALRGTAATLAGAWDRLRSQPLRERPLPPVEAGDVLAPLRAVLA 220 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 +W + L E + + + + + + ++ + P + Q Sbjct: 221 AADRWPEGDKLTTHLREVVHPFAQAVSAATDRWDVLALLGDVKLSSSGGRKPA----WQQ 276 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 L+ KA A++ L + + +T + + A +R G L F Sbjct: 277 AGLD---KAEVVDALAHAQRAVEDLRSAVGAATTKTLTARVQDWLLAEADRRRELGALSF 333 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE----- 406 D+L LR + + ++PV +IDEFQDTDP Q I + E Sbjct: 334 HDLLVLARDLLRRNRD--VRERLHAQWPVLLIDEFQDTDPLQVEIACLLAGDCGEEPPEQ 391 Query: 407 --------TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT-LDTNWRSAPGMVNSV 457 L +GD KQ+IY FRGAD+ T+ T L N+RS PG++ + Sbjct: 392 WQEIPVAPGRLFFVGDAKQSIYRFRGADVATFTAVGDLHERGRTGLAVNFRSVPGVLEAA 451 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 N F A I + + A A + L G + Sbjct: 452 NHAFRTLIGADPAAGIAYADLHPARDGGADGVDVP-------VLLLGGDRDVPAGALRDL 504 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDA-----RPVRASDISVLVRSRQEAAQVRDALT 572 A+ A I G EA + D RP + D++VL+ +R A + AL Sbjct: 505 EAEHVADVIARAKAEGWPVEASTRHPDGTSTRGQRPAQYRDVTVLLPTRTPLASIERALE 564 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 +IP + +R V+ T + +L LLQAV +P + L +AL + + +D+ Sbjct: 565 GRDIPYR-VESRSLVWSTDAVRAVLALLQAVDSPADQVALLAALRQPGLACSDVDLVGWR 623 Query: 633 NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE------------NLLATAGG 680 W + +G + + LR R L+ Sbjct: 624 AAGGRWSIHAAVPEGIDEQHPVAAALRTLRRWHEQRWWVPVNQLVEEVVRELRLVELTAS 683 Query: 681 ERRLTDILHISELLQEAGTQL--ESEHALVRWLS-QHILEPDSNASSQQMRLESDKHLVQ 737 +RR D + + + L +LS + DS + + E D V+ Sbjct: 684 QRRPRDHWRRLRFVVDQAREWCDRGGSGLTGFLSWTVRQQQDSADLVETVVPEPDDDAVR 743 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEA-----VLDLNAAPESVDLAEA 792 I+T+H SKGLE+P+ + + + VL++ ++ +A Sbjct: 744 ILTVHGSKGLEFPVTVVAGLNGSGRDDATVLWAPDGPLVRFRADVLEMPGWRQASQDEKA 803 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG---DKKGDTDVHQSALGRLLQKGEPQD 849 E E +RLLYVALTR+ H +G R G +K + S L R + Q Sbjct: 804 ESEQEAIRLLYVALTRAQDHLVVGCYHKPSRTGGSRAQKLWELLADSGLARCESEPRAQR 863 Query: 850 AA---GLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 AA T + L +D D + + + + Sbjct: 864 AAQGTAPATPFQVLVPEDEGRTARDLPDRAEFLEQRAALLAALHAAVATSATAVRQ---- 919 Query: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEE--PTLTPHQFPRGASPGTFLHSLFEDLDF 964 G +++ P + DA + E RGA+ GT +H + E D Sbjct: 920 -ATAVPTSGPSREEEPAKEHDAPDTTAGDEAGVRPPRRTTRRRGAAVGTAVHRVLELADL 978 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 P R L E + Q+ +VE + Sbjct: 979 RSPSREEVRR---------------------------LAEAVCAAEQVPDSTGEVEQRAW 1011 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKS 1083 ++ P++ D + L + L+G++DL+ G ++DYK+ Sbjct: 1012 SALTAPVVRDAAD------GGRTWREVYLVVDDGQRYLEGYVDLLAETSTGELVVVDYKT 1065 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 + + + A A + Y Q Y AL R L R Sbjct: 1066 DRV--------RSAADVAAKEQHYAGQLDAYADALARVLGRR 1099 >UniRef50_UPI0001C314BB UvrD/REP helicase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314BB Length = 1184 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 224/1190 (18%), Positives = 399/1190 (33%), Gaps = 207/1190 (17%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 + G L+ A+AG+GKT +A ++R +L G + V +L +TFTE A +EL Sbjct: 15 IEHAGGLLLTANAGSGKTSVMAERFVRAVLHEG--------VEVTRILAITFTEKAASEL 66 Query: 73 RGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGF 132 + R+R L T+ A V TIHGF Sbjct: 67 KERVRRRFEALGEPERARATE-----------------------------GAWVSTIHGF 97 Query: 133 CQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 C R+L + +G+ ++++ + A A + P Sbjct: 98 CARLLRTHPLAAGIDPRFSVLDEHGARQLAVGAFDAALDALAEEHGTAALELIAAYRPAD 157 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGI 252 L I L + R A + + + A E+ + + Sbjct: 158 LRSAI---LDVHGELRSRGEEQPSLPQPRPAALEPKRVALAIARVQAEAEVAVARDGRSV 214 Query: 253 DRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS-QRFLEDRTKAGGETPRHPLFE 311 R + + + +++++A + + P + + + R G E R L Sbjct: 215 FRARLALAECERLLERVAAASAGDPGYAPSPGEVARLALPRNGRALAGEGCEGYRTALQA 274 Query: 312 AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLA 371 +D ++ L A K+R + F+D+ R + LR E L Sbjct: 275 YVDACADAHAVPVHGLLDALLRGFGRRYAEAKQRASAVDFEDLELRANRLLREH--EELR 332 Query: 372 AAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYM 431 A RF M+DEFQDT+P Q + RI + L +GD Q+IY FR AD+ + Sbjct: 333 ARYAERFVHVMVDEFQDTNPLQLELLERIAGER----LFTVGDELQSIYGFRHADVELFR 388 Query: 432 KARSEVHAH---YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK------SAG 482 + R + H +L TN+RS ++ ++N F+ + + + Sbjct: 389 RRRKALAEHGAAASLATNFRSHAEILETLNVAFAPRFGESFTPLVAGREERADALPVAGP 448 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 + + L + + A L EG + ++ A+ AA++R+ L G+ Sbjct: 449 RVELLVVDVRADWANA--GLLPEGMAAPAPLWRVAEARALAARVRELLDGGR-------- 498 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 RA D+ +L+R+ + A ALT L +P+ + R + + ++++ L Sbjct: 499 -------RAGDVVLLLRATGDLAVYERALTDLAVPTYVIGGR-GYWAQQQVRDLVAYLGV 550 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLN------------------------------ 632 + P L+S LA+ ++GL++ + + Sbjct: 551 LANPRDGVALQSLLASPLVGLSSDGLVQVVAAARASRREGEPPDPWWVLTEGRELLARLA 610 Query: 633 -NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 +D + + R + + +L ++ LL G RRL ++ + Sbjct: 611 PDDAERVEELRAWLPAERATAPRHSLESLLDRVLDQTGYDVELLRLPSGARRLANVRKLM 670 Query: 692 ELLQE-AGTQLESEHALVRWLSQH---ILEPDSNASSQQMRLESDK-HLVQIVTIHKSKG 746 L +E + V + + + + +E + V+++TIH++KG Sbjct: 671 RLAREFEAEEGRDLRGFVDMVMELGGGLESSREQDRESEAPVEGEALDAVRLMTIHRAKG 730 Query: 747 LEYPLVWLPFIT---------------NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE 791 LE+P+V + + + RV + D + L E+ AE Sbjct: 731 LEFPVVCVADLGRGSPAAGSDVVRVGRDGRVGIKLKTLDGSAPRPALAYRPIGEARARAE 790 Query: 792 AERLAEDLRLLYVALTRSVWHCSL-GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA 850 ++ E+ RL YVA+TR+ L G P K G + + + Sbjct: 791 SD---EEARLYYVAMTRAREQLILSGAVPTEPWPEPKLGAPAITWIGPAFVPEIARLAAP 847 Query: 851 AGLRTCIEALCDDDIAWQTAQTG-------------------DNQPWQVNDVSTAELNAK 891 G + + + +A+ + G + + A + A+ Sbjct: 848 DGEPSGVVSNEGQAVAYSVVRPGAAALAPSLAGSEGDRGRVLSHARERTPAGRRAHVRAR 907 Query: 892 TLQRLPGDNWRVT------SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF 945 R GD SY+ L + + R V H Sbjct: 908 A-TRPIGDGGGTAPPVATLSYTSLADHARCGYRFYLER--VLRLPPVDDAPRGRGGRHGL 964 Query: 946 PRGASPGTFLHSLFEDLDF--TQPVDPNWVREKLELGGFESQWE--PVLTEWITAVLQAP 1001 G H+L E +DF QP D VR G + E + + L +P Sbjct: 965 AASTR-GVIAHALLEQVDFVRAQPPDAELVRRAAVRAGADPTAEELDEIRGLVVRFLASP 1023 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 L E S L + E F + E Sbjct: 1024 LRERLASARDL-----RREQAFSFALDELP------------------------------ 1048 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWL-GEDSSAYTQQAMAAAMQAHRYDLQ 1110 L G D + R R ++D+KS+ L G D +A Y LQ Sbjct: 1049 LVGVFDAIAREGNRTLIVDWKSDRLEGADPGETVARA---------YGLQ 1089 >UniRef50_B8GTW0 UvrD/REP helicase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTW0_THISH Length = 1147 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 231/1158 (19%), Positives = 407/1158 (35%), Gaps = 166/1158 (14%) Query: 23 ASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 ASAG+GKT+ + LRLLL + +L VTFT A E++ R+ + E Sbjct: 28 ASAGSGKTYLLVTRILRLLLAGA---------RPDGILAVTFTRLAAGEMQSRLTERLRE 78 Query: 83 LRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE-AAVFTIHGFCQRMLNLNA 141 + D L + + D + A+ L D T H FCQ +L Sbjct: 79 WQ-TLDDTALDRALADMGVSVDDAVRERARRLFEQTLLADRPVRATTFHAFCQDLLARFP 137 Query: 142 FESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV---FETWKGPQALLRDIN 198 E+ + +L ++E L+ +A +A+ + T ++ + ++ Sbjct: 138 LEARVPPGFELADNERELQDRAWDALVSEATRAPDATVARALETLIATLNSVDSVRKALD 197 Query: 199 RYLQGEAPVIKAPPPDDETLASRHAQIVARI----------DTVKQQWRDAVGELDALI- 247 +L + + LA A+I + D + R + +L AL+ Sbjct: 198 GFLSHREDWWAWTEHEADPLAFARARITEALAVDPDADPRGDCLDPATRADLTDLAALLA 257 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH 307 ++ D+ A I E + ++ + ++ + GGE Sbjct: 258 RNTSTDKPLGQALADALAIGDTGVLFEAARAALLTQKNTPRVRKQSAAQAKRLGGEAAED 317 Query: 308 PLFEAIDQLLAEPLSIRDLVITR-----------ALAEIRETVAREKRRRGELGFDDMLS 356 L L L+ D + + A E K L F D+ Sbjct: 318 RLLALHGTLCERWLAALDGLARQHSLRLNGAWFSAGLRYLEHYQALKEELRTLDFTDLEW 377 Query: 357 RLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW------HHQPETAL 409 R L + + + +R +IDEFQDT+P Q+R+ + + ++ Sbjct: 378 RAYQLLNHGDHALWVQYRLDSRIEHLLIDEFQDTNPTQWRLILPLLEELAAHGERQGRSV 437 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-----TLDTNWRSAPGMVNSVNKLFSQT 464 L+GD KQ+IY+FR AD A + TLD +WRS+P +++ VN++F+ Sbjct: 438 FLVGDTKQSIYSFRRADPRLQEIAARWIEERLNGRPETLDWSWRSSPAVMDFVNRVFTAC 497 Query: 465 DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ--------- 515 A F P + K+ R Q + S G+ D Sbjct: 498 P-ALRAALPGFHPHDTHLKDLWGRVEVWPLIQADQETEEDTPASQGLRDPLTTPRPDPGE 556 Query: 516 ---STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 + AA+IR+ + GQ ++ G ARP+ DI++LVR+R + DAL Sbjct: 557 SLHAREGARIAARIREMVDGGQ----VVGRGASARPMHFGDITILVRNRTHVGAIEDALR 612 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 IP + + R + + LE +++ LL+ ++TP + L L + + + ++E L Sbjct: 613 DAGIPYLSAA-RGELLDHLEVRDLEALLRVLITPHDDLALAQVLRSPLFDVTHRELERLA 671 Query: 633 NDE------------------HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 + A ++ +R V +L + N+ Sbjct: 672 DAGPGPWHERLERLAPDLPPGSALKRAADKLTRWRAWSGALPVHDLLDRIFLDGNVLARY 731 Query: 675 LATAGGERRLTDILHISELLQEAGTQLESEH-ALVRWLSQHI-LEPDSNASSQQMRLESD 732 A + +R T + + L+ A + +LV +L++ L S+A+ + Sbjct: 732 QAGSRADRVPTVMASLIRFLELALEVDSGRYPSLVHFLARLRGLRDRSDAAPDTPPVRGA 791 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-----YHDRHSFEAVLDLNAAPESV 787 + V+I+TIH SKGLE P+++L + + + ++ L + V Sbjct: 792 EQRVRIMTIHASKGLEAPVIFLADAAAVPRDHKTYEPLVQWPAGEPRPRLMQLLPRSDDV 851 Query: 788 DLAEAERLA--------EDLRLLYVALTRSVWHCSLGVAPLVRRRGD--KKGDTDVHQSA 837 D + LA E+ LLYVALTR+ + + + G + + A Sbjct: 852 DSLTRQALAHHQTAREREEANLLYVALTRARQVLIVSASARGKGDGGWYARIREAIAPEA 911 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP 897 + L G P A + + +A + A QV + L +R Sbjct: 912 VSEELDTGVPGRFAEDGSWVHEAGTPPVAAEQA-VATPPAAQVPEGLNRRLECAAPEREI 970 Query: 898 GDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHS 957 + + G A+ D DA G +H Sbjct: 971 APS----------RAAAGYAEGEREDGDEDARLR--------------------GVGIHR 1000 Query: 958 LFEDL-DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARN 1016 L E L + D +R G + P L EW L E L+ Sbjct: 1001 LLEWLAGGMRDSDAALIRRLAAELGLDPG-HPDLGEW--------LGEARAVLA------ 1045 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP-PLEFMQVRG-MLKGFIDLVFRHEG 1074 L + C PL++ G + G ID + Sbjct: 1046 ----------------EPGLAAVFAPAPDCVDYCEVPLQYTAADGRTVYGIIDRLRVGRE 1089 Query: 1075 RYYLLDYKSNWLGEDSSA 1092 R L+DYK++ + ++++A Sbjct: 1090 RILLVDYKTHRVADEAAA 1107 >UniRef50_A7VJ43 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VJ43_9CLOT Length = 1247 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 225/1290 (17%), Positives = 437/1290 (33%), Gaps = 235/1290 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFTEAATAELRG 74 G L+ A+AG+GKT + L +++G+ + ++E+LVVTFT AA A+++ Sbjct: 17 HGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEVLVVTFTRAAAAQMKE 76 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 +I + + D+P E +++++ + A + TI FC Sbjct: 77 KIADKLEQAA-------EDHPEDEHIVKQLS--------------LLPRADIMTIDSFCL 115 Query: 135 RMLNLNAFESGMLFEQQLIEDES-------------LLRYQACAD--------FWRRHCY 173 ++ G+ + ++ +YQ +D F R+ Sbjct: 116 GIVKDYFQMIGIDSSFDIADNAEMDLIKNDILDEVLEQKYQEASDEFIGLVDSFARKESD 175 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 RE+ ++ G R IN E + + + TL + DT+ Sbjct: 176 EKIRELVYQIYRVASGYPKPERWINE---AETALEVSTKEELYTLKWYRDYMQIVADTLD 232 Query: 234 QQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRF 293 A L+ E+ G + + + AE+ +Y+ + Sbjct: 233 SAIGQAEQCLEIAGEADGPAGYDPIIRLDLELLRNLRQ-AEDMDEAYKRVSKFSNLKRIA 291 Query: 294 LEDRTK-----------AGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEIRETVA 340 D K G LF +L+E ++ + + E + Sbjct: 292 ACDPEKQQYVKTTMQTYRGSVKDMMALFRPTGVILSECAMMKGPLSALLSLTRSYMERLK 351 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGE-------VLAAAIRTRFPVAMIDEFQDTDPQQ 393 EK R F D+ L + + E + R+ +IDE+QD++ Q Sbjct: 352 EEKLDRNLYEFRDISEFAYDILCAGTDENGCVIPSEAGKTVARRYREILIDEYQDSNFLQ 411 Query: 394 YRIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-------YTLDT 445 I + H + + ++GD KQ+IY FR A ++ + L Sbjct: 412 EDILNCVTGHGEDRKNMFMVGDIKQSIYRFRMARPDLFLNKYNTYSDREDAEDQKILLSN 471 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RSA +++++N++F + K Q + G ++ + Sbjct: 472 NFRSAGKVIDTINQIFEPLMSENLGGIDYDESAKLHIGRQDKNNMGYGSEILIVRNDCAD 531 Query: 506 GESCGVGDYQST-----MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 E + +S A++ A +I + ++ + + + R V DI+VL+RS Sbjct: 532 SEKSQPEEIRSLTNVDIEARMIADEIYELVKGDKPLYIPDGDNGETRRVSYRDIAVLMRS 591 Query: 561 -RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 ++ A +A IP +++ + F+ +E +L +L + ++ L + L + Sbjct: 592 VKKNAKAFEEAFAERGIP-LFVESESGYFDAIEISTLLDMLAVIDNSHQDYALAAVLRSP 650 Query: 620 MMGLNALDIET---------------LNNDEHAWDVV--------VEEFDGYRQIWRKR- 655 + G+ ++ L + V E + RQ R Sbjct: 651 LAGVKEQELAEIVGIYDRDFKDHEKNLARTASFYQKVCYYAEKPDSEASEELRQFLRMLD 710 Query: 656 ---------GVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEH 705 + +L +++ + A G+RR +I + + + Sbjct: 711 SWKADKNYMSISELLHSILEQTGYYWFVGAMQSGKRRQANIDMLIQKADTYEDSSFRGLF 770 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 +R++ + L+ + ++ L D V ++T+HKSKGLE+P+V++ + N Sbjct: 771 NFLRYMDR--LKTNDLDFAEASVLGDDDDSVVMMTMHKSKGLEFPVVFVSGLANRFSNLD 828 Query: 766 AF-------------YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 A Y A A + + AE+LAE++R+LYVAL+R+ Sbjct: 829 ALSPVTVNADSYLAGYAIDRKNRAKKKTFARAAMLSVMNAEKLAEEIRILYVALSRAKEK 888 Query: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC----------- 861 + A V+ G +K D + G+ + T +EA C Sbjct: 889 LYMTAA--VKDPGAEKAVFDYPLQTDFLIEASGQMRMELPYITRMEAGCFMDWILSALSM 946 Query: 862 -----------DDDIAWQTAQTG-DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL 909 D W A+TG NQ +E NA + + S S + Sbjct: 947 HIVSEDIVCRKDTYATWVLAKTGYQNQILAGTKTDMSEENAVQTENETENK----SKSMI 1002 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGT---------------- 953 Q + + LD + ++ + R A G Sbjct: 1003 AQEDRQLYEKYKELLDYTYPYKTEQAVKNKMSVTEIKRLAHRGEENPGSDLYQPPVTEAE 1062 Query: 954 ----FLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVL----------- 998 LHS ++ + + +EL F + E I + Sbjct: 1063 LTIPVLHSRMKEEPVKGNEMGTVIHKIMELIDFTRNSMDEIREQIRSFFDHGYLEERYRE 1122 Query: 999 -----------QAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPL 1046 +PL G+ +++ + E +FY+ + I+ Sbjct: 1123 HVRADKIYNMVNSPL---GIRMAEAQKNHTLYREQQFYIGMKPEDIS------------- 1166 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 P + + +++G ID F + L+DYK++ + + S R Sbjct: 1167 ----PEYKDSKDMVVVQGVIDAYFLEGDQVVLMDYKTDRVDQISD-----------LVSR 1211 Query: 1107 YDLQYQLYTLALHRYLRHRIADY-DYEHHF 1135 Y +Q +Y +H+ + + Y HF Sbjct: 1212 YHVQLDMYAKTIHQLTGRMVTEKIIYAFHF 1241 >UniRef50_Q1GCN8 ATP-dependent nuclease subunit A n=11 Tax=Rhodobacterales RepID=Q1GCN8_SILST Length = 1121 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 211/1165 (18%), Positives = 405/1165 (34%), Gaps = 159/1165 (13%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + A+AG+GKT + RLLL R + + +L +T+T+AA +E++ R Sbjct: 17 DASTWLAANAGSGKTKVLTDRVARLLL---------RGVEPQHILCLTYTKAAASEMQNR 67 Query: 76 IRSNIHELRI--ACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 + + E + L D AQA A + TIH FC Sbjct: 68 LFQRLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTIHSFC 127 Query: 134 QRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQ 191 +L E+G+ + +ED + +LR + D A + Sbjct: 128 SSLLRRFPLEAGVSPQFTEMEDRAAAMLRAEIAEDM--AQGPDAHVVEAASFHIGGLDFE 185 Query: 192 ALLRDINRYLQG-EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESS 250 L +I R G + + + L + + + + + + + +++S Sbjct: 186 TLTAEICRRQAGFDPALDHNRLGEVFDLPAGYDRSALQAEVFLGNEEEILSRTIEMLKSG 245 Query: 251 GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF 310 G K N A+ + + +S + + L Sbjct: 246 GATDTK-NADKLARITAVTPDVLPLLEDVFLTGKSAKDPFSAKIGSFPTKKLRESNGVLM 304 Query: 311 EAIDQLLAEPLSIRD-----------LVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 + ++ +A + R +V+ R K+ RG L FDD++ + Sbjct: 305 DQLEPFMARVEAARPKRLALDAMEKSIVLHDFARVFLPEYERRKQLRGWLDFDDLIVKAR 364 Query: 360 SALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---------QPETAL 409 + L + + + ++DE QDT P Q+ + ++ E + Sbjct: 365 NLLNDPAVAAWVLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTI 424 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHY----------TLDTNWRSAPGMVNSVNK 459 ++GD KQ+IY+F+GAD + + ++E +L ++RS+ ++ V+ Sbjct: 425 FVVGDKKQSIYSFQGADPDAFDRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDV 484 Query: 460 LFSQTDDAFMFREIPFIPVKS--AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 +F A + KS G+ V K + + + W + + Sbjct: 485 VFDGEHRAGFADDAKHQAFKSDLPGRVDLWPLVEKTDDEEE-RDWTDPVDRPSPRHHSVI 543 Query: 518 MAQVCAAQIRDWLQAG--QRGEALLMNGDDARPVRASDISVLVRSRQEA-AQVRDALTLL 574 +A+ A I++ + G + RPV A D +LV+ R + +++ A Sbjct: 544 LAERIANHIKEMIAQGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEIIRACKAA 603 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL--- 631 +P + ++R V L +++ LL+ + PE +L AL + + G + + L Sbjct: 604 GLP-IAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHR 662 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH-- 689 ++ H W + + + Q + + ++ E +L G ++ L Sbjct: 663 RSEMHLWPALRARSEEFPQTMEILNDLRRQADFLRPYDLIERILTRHLGRAKILGRLGTE 722 Query: 690 --------ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 +S+ L T++ S + W+ ++ + ++ + +++++++ Sbjct: 723 AEDGINALLSQALAYERTEVPSLTGFLVWMQ-------TDDLEIKRQMGAASSMIRVMSV 775 Query: 742 HKSKGLEYPLVWLPFITNFRVQEQAFYHD-RHSFEAVLDLNAAPESVD----LAEAERLA 796 H SKGLE P+V LP T R A + + + + P ++D A+ ++ Sbjct: 776 HGSKGLEAPIVILPDTTKRRPSPAAEVMEVDGTPLWRMSSDQMPPAMDAARVFAQEKQAN 835 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 E LRLLYVALTR+ + A DK GD+ + P DA G Sbjct: 836 ERLRLLYVALTRAEKWLIVAGA----GDLDKGGDSWYQRVEAAMKTMGALPYDAPG---- 887 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 + + W W+ ++L + LP R + Sbjct: 888 -----GEGLRWAHGD------WEAPVFVPSDLTEEDEITLPEVFRR--------AAPAYV 928 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREK 976 A R D G ++ + L+ + GT LH L E L D + E Sbjct: 929 APAATLRPSEDLGGAKALPGDSGLSEED---AKARGTALHLLLEHLPKLPEEDWDNRAEA 985 Query: 977 LELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 + W+ +L E + + + A E+ P+S L + Sbjct: 986 IAQH---EDWKALLAEARQVLCSDD-------CADIFAPGTLAEV----PVSADLGTVR- 1030 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 L G ID + R +D+KSN + S+ + Sbjct: 1031 -------------------------LHGIIDRLVITPDRVLAVDFKSNAVVPQSAEACPE 1065 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRY 1121 + M A Y +AL + Sbjct: 1066 GLLRQMGA---------YDVALRQI 1081 >UniRef50_C0FS43 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FS43_9FIRM Length = 1182 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 206/1171 (17%), Positives = 388/1171 (33%), Gaps = 214/1171 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + ++++ P+ ++ LL+VTFT AA AE+R RI Sbjct: 19 NILVSAAAGSGKTAVLVERIVKIITDKN------HPVDIDHLLIVTFTNAAAAEMRERIG 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + I + D+ + LL + A + TI FC ++ Sbjct: 73 NAIEKAL---------------------DEQPGNEHLLRQLTLIHNAQITTIDSFCLYVV 111 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVV------------ 183 + E + ++ ++ L LR ++ + V Sbjct: 112 RNHFHEIDLEPNFRIGDEGELKLLREDVLGRVLEQNYEEPSEAFSDFVEGYASGRTDAAL 171 Query: 184 ----------FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 ++ P+ L + E L ++ + + Sbjct: 172 NEMILQLYEFSRSYPWPEKWLDSFVGIYRIENREELDRAEWLAPLTQNIRFVLKDCEQLL 231 Query: 234 QQWRDAVGELDA---LIESSGIDRRKFNRSNQAKWIDKIS--------AWAEEETNSYQL 282 +Q + D ++ D K+ ++ ++S Sbjct: 232 KQALAVTQQDDGPDMYEKAVRSDLEKYESLSKLTSFCELSVALSDIKYDRLASSRGFEGD 291 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI---TRALAEIRETV 339 P+ LE L ++ K + F +++ E L + ++ R + + Sbjct: 292 PDKLELVKS--LREQAKDVVKKLCKQYFFCSPEMMIEQLERTEPMLEEVVRLTKQFADEF 349 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVL---AAAIRTRFPVAMIDEFQDTDPQQYRI 396 A KRR+ + F D+ L E E A R F MIDE+QD++ Q + Sbjct: 350 AAAKRRKNLVDFHDVEHFALQILVDEETEKAKKTAEEFRDTFEEIMIDEYQDSNEVQETL 409 Query: 397 FRRIWHHQ-PETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNWRS 449 R I + E + ++GD KQ+IY FR A +MK L N+RS Sbjct: 410 LRSISREERGENNIFMVGDVKQSIYRFRLARPELFMKKYDSYSLEESTTQRIDLHKNFRS 469 Query: 450 APGMVNSVNKLFSQTD-----------DAFMFREIPFIPV---KSAGKNQALRFVFKGET 495 ++ N +F + +A ++ + + K+AGK + K Sbjct: 470 REEVLTCTNDIFYKIMARSLGNVEYDAEAALYPGASYPAIEMKKTAGKEETAEEQTKQSI 529 Query: 496 QPAMKMWLMEG------ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 L+ E D ++ A++ A +IR ++ + R Sbjct: 530 ADFTPEILLADSNDELLEDTEFSDKKTLEAKIVAEEIRHLMKT---QPVTDKATGELRAA 586 Query: 550 RASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 R SDI +L+RS A + + L IP+ +S+ F T+E Q +L +L+ + P + Sbjct: 587 RYSDIVILLRSLSGWADSLVEVLNGNGIPAHTVSS-TGYFSTVEVQTVLSMLRLLDNPRQ 645 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAW---DVVVEEFDG------------------ 647 + + + L + M GL ++ L ++ + + V+E +G Sbjct: 646 DIPMAAVLRSPMAGLTDEELAVLRLEDGSVPFHEAVLELAEGLYEEDGQKEISDSEADSE 705 Query: 648 ----------------------------------YRQIWRKRGVMPMLRALMSARNIAEN 673 RQ+ + ++ ++ Sbjct: 706 ADQKQGRNADEKTENHIEITAHRKLLKFYKKYKQLRQLVPDTPIHELIEIILRETGYGHY 765 Query: 674 LLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 + A G RR ++ + E T + VR++ + L+ + + + Sbjct: 766 VAAMPAGNRRTANLNMLLEKAAAYEKTSYKGLFHFVRYIDE--LQKYDVDFGEADMVGEN 823 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD--RHSFEAVLDLNAAPESV--- 787 + +V+I++IHKSKGLE+P+V + + ++ LD + + Sbjct: 824 EDVVRIMSIHKSKGLEFPIVIVSGMGKNFNKQDTRSKMVLHPELGIGLDYMDGKKRIKSP 883 Query: 788 --------DLAEAERLAEDLRLLYVALTRSVWHCSLG---------------------VA 818 + E L E+LR+LYVALTR+ L A Sbjct: 884 TIAKKAIAKQIDLENLGEELRVLYVALTRAKEKLILTGTLKDAPEKLEFFRQQANLSKAA 943 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 ++G + L +L G+ + L + + + + + Sbjct: 944 DRPLSYLTREGASGYLDWILPAVLSYGDKYPVRIVEAAELVLDEVENQLEQNEDLTERIE 1003 Query: 879 QVNDVSTA---ELNAKTLQRLPGDN--WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS 933 ++ T +L + QR P R YS A + + A Sbjct: 1004 EIEAADTQLVGQLKQRFSQRYPYQTDILRKNKYS--VSELKHRAMREKFEAEQEETIPAF 1061 Query: 934 VVEEPTLTPHQFP------------RGASPGTFLHSLFEDLDFTQPVDPNWVREKLEL-G 980 + E T T F RGA GT +H + E DF + E +E Sbjct: 1062 LEEPVTPTIPLFIQREESVEQETANRGALRGTAVHRVMECYDFASEKSVHEQMEAMEKEE 1121 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGVSLSQ 1011 + ++ E A + ++L+Q Sbjct: 1122 KITADMRALVREQTVADFVSSETGKRMALAQ 1152 >UniRef50_A8SJB2 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJB2_9FIRM Length = 1261 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 222/1288 (17%), Positives = 452/1288 (35%), Gaps = 255/1288 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+L P+ + +LLVVTFT+ A +E+R R+ Sbjct: 20 NLLVSAAAGSGKTAVLIERIIELVLDEKN------PIDINKLLVVTFTKLAASEMRERVS 73 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 I + LEE + + LLL + A + TI FC+ +L Sbjct: 74 KAIEKK-----------------LEENQENEHLQKQLLL----LSGADITTIDSFCKDVL 112 Query: 138 NLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKG------ 189 A + ++I+ + +L + + + ++V K Sbjct: 113 ISYAHLVNLDSNIKIIDPSENEVLAKEVMQELFEELYENNDDSFLRLVDWYAKKNTDEGL 172 Query: 190 ----------------PQALLRD---------------INRYLQGEAPVIKAPPPDDETL 218 P L + + Y+ A + E Sbjct: 173 LQLLLNVNNFVNSHPFPNIWLNEKAEFFNTNTKDGDFYLENYILDIAKDVDMDLEFFELS 232 Query: 219 ASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETN 278 + + + +++ LDAL + +KF + N KIS N Sbjct: 233 IKNNLKKIEDYPELEKYVNMYNDLLDAL-SVVKENLKKFLKDNTKFEELKISTNEFLRLN 291 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD---------LVIT 329 S + + ++ K ++ + + E++ L + +I+ I+ Sbjct: 292 FGSFRISKCDEEVKEIYNKVKKELDSIKSEISESLKTLNLDLENIKKESDLIYPYVRSIS 351 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMI 383 + + +E K++ + F D+ L A + ++ I Sbjct: 352 DVVIKFKEKFWERKQKFNYVDFADIEHLALEILVDIDVDGNIKPSKTALEYQEKYSEVFI 411 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE------- 436 DE+QD++ Q + + E ++GD KQ+IY FR AD +M+ Sbjct: 412 DEYQDSNLVQEILLSAVA---KENNRFMVGDVKQSIYRFRQADPSIFMEKYENYYRVEED 468 Query: 437 ---VHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK-NQALRFVFK 492 + L N+RS ++ N +FS+ M +E + + N F Sbjct: 469 IESFNRKIMLYANFRSRKEILEGTNLVFSK----IMKKETGELDYTVDERLNPMASFKES 524 Query: 493 GET-QPAMKMWLMEGESCG--------VGDYQSTMAQV---------CAAQIRDWLQAGQ 534 E A+++ L++ S +Y ++ A I + + + Sbjct: 525 DENVGGAVEILLVDENSDSEDEDEIILTDEYSEDFEEMKSFKLECIKIANTIYNMMNNKE 584 Query: 535 -RGEALLMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 + N DD R V DI +L+RS + + IP +Y + F+T E Sbjct: 585 NPFKVYDKNLDDYRKVEYKDIVILMRSPSSNTKILEEVFLEYNIP-IYAESTGGYFDTFE 643 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVVVEEFD--- 646 ++ LL+ + P ++ L S + + + + ++ + + ++++++ + Sbjct: 644 VDTIINLLKIIDNPMQDIPLISVMYSPIYNFTSKELSEIRLVDRELKFYELLIKILEDED 703 Query: 647 ----------------GYRQIWRKRGVM---PMLRALMSARNIAENLLATAGGERRLTDI 687 + K+ ++ ++ L + GE+R T++ Sbjct: 704 IEIRISLKEKISKFIYDLKLFIEKKSLVSADELIWFLYKYTGYYNYVGLLDMGEQRKTNL 763 Query: 688 LHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 + + E + V ++ + L+ D S+ + D ++V+I++IHKSKG Sbjct: 764 MLLFEKAKNYEKNSYKGLFNFVNYIQKISLKSDI---SEAKLISEDANVVKIMSIHKSKG 820 Query: 747 LEYPLVWLPFIT---NFRVQEQAF-YHDRHSFEAVLDLNAAPESVD---------LAEAE 793 LE+P+V+L NFR + H + F AV+ S + + E Sbjct: 821 LEFPIVFLANTNKKFNFRADDSNLVLHQKLGFGAVVYDMDKKTSFNSIMKKKIEKFKKNE 880 Query: 794 RLAEDLRLLYVALTRSVWHCSLG------------VAPLVRRRGDKK--------GDTDV 833 ++AE++RLLYVA+TR+ + ++ + RG+ D Sbjct: 881 QIAEEMRLLYVAMTRAKEKLIITGRVKDYENLREEISSGIDERGNISNYKILKINNYLDW 940 Query: 834 HQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL----- 888 S++ L G + G + L ++D+ +Q + + E+ Sbjct: 941 ILSSINNLTVYGTSLNCLGRKENF--LGNEDLKFQLNVNTKTEEFIEYQRIKEEIKTNEI 998 Query: 889 -----------NAKTLQRLPGDNWRVTSY---------SGLQ-QRGHGIAQDLMPRLDVD 927 +T++ D + Y S + + Q+ Sbjct: 999 ILDEDNIEVKQEMRTVKEFLEDRFNKE-YVYKNVLNKPSSITVSEIKKMIQEEDEEKHQK 1057 Query: 928 AAGVASVVEEPTLTPHQFPR----GASPGTFLHSLFEDLDFTQ--PVDPNWVREKL--EL 979 V++ P+ + A GT H + LDF++ D + +RE++ ++ Sbjct: 1058 YYKENFVLKTPSFIHQGEEKVGFNSAEKGTIFHLAMQLLDFSKFDTEDVSKIREEIKSQI 1117 Query: 980 GGFES-------QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 F + E + WI +++ + + ++ K+ +++ + + Sbjct: 1118 NSFVEKNIMSLDEIETININWIVKFIKSDIFKEIYIANKFGKLFKEKAIDYNIKLKNLFK 1177 Query: 1033 ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR-HEGRYYLLDYKSNWLGEDSS 1091 D I +++ + M+ G IDL F G LLDYK++++ Sbjct: 1178 ----DENIEEYEKI--------------MVVGIIDLFFENENGEIILLDYKTDYV----- 1214 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 T++ + RY +Q LY A+ Sbjct: 1215 --TKENLEEV--KARYKVQLDLYKSAIE 1238 >UniRef50_D2RKU1 Exodeoxyribonuclease V n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKU1_ACIFE Length = 1116 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 240/1149 (20%), Positives = 419/1149 (36%), Gaps = 173/1149 (15%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 L + A AG+GKT + +L++L R T +E+L +TFT A E+R Sbjct: 15 LDRNVSVSAGAGSGKTRVLVERFLKIL--------QERKATAQEILAITFTRKAAREMRE 66 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 R++ I + A E ++KA + L LA D A + TI FC Sbjct: 67 RVQKGILDRLGAA--------------AEPEEKAYWQEQLQLA----DRAPITTIDSFCS 108 Query: 135 RMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 ++L N E+G+ + E+ R + F ++ ++A ++ P Sbjct: 109 QVLRENPVEAGLDPNFAVKEEYQIRAFREETAQAFVQKEIQQQDGDLAALLDLY---PAD 165 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGI 252 L I L + P I A P LA+ + + + K +A G LDAL+ES + Sbjct: 166 RLARILVALIDDLPEILALPG---GLAAPYEVSLGGEEAGK---IEAEGALDALLESRDL 219 Query: 253 DRRKFNRS--NQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF 310 K A + I W S + ++D K E Sbjct: 220 AGPKSRAKLDALADQREAIHQWIAAGEYSKASAALKPVSATGKIKDLVKEAKEALARLET 279 Query: 311 EAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVL 370 ++D AE + ++ R R+ + R F + R L + Sbjct: 280 LSLDGAGAEQARHWENLLGR----FRQALLDAAESREIYSFGYLSGRAVELLEKRPN--V 333 Query: 371 AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ----PETALLLIGDPKQAIYAFRGAD 426 ++RF M+DEFQDT+ +Q R+ + L ++GD KQ+IY FRGAD Sbjct: 334 LFRYKSRFRYLMVDEFQDTNEEQKRLVYLLSGGSSRSLQGRNLFVVGDAKQSIYRFRGAD 393 Query: 427 IFTYMKARSEVHA----HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI---PFIPVK 479 + + + R + + +D N+RSAP ++ + N LF ++ P P + Sbjct: 394 VSVFRQVRDAIGETGGDNIVMDDNFRSAPEIIEACNTLFDDLLGTDSRSDVTAQPLHPHQ 453 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 + + + KGE C + + Q + A IR Sbjct: 454 PSSRKPVFAVLKKGE--------------CTLEECQQAEGRYVAQAIRQL---------- 489 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 + + +++L+ + + Q +ALT L I S +S+ +E E + + L Sbjct: 490 ----REDTGLPYGQMAILLPAIHLSRQYEEALTALGIKS-QVSDGKGFYERQEVVDWISL 544 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETL--------------NNDEHAWDVVVEEF 645 L ++ P ++ L L + G++ + L + E + + + Sbjct: 545 LTFLLNPRKDWALAGFLRSPYAGISDRQLTDLLKPWPELSLWESLRQSLEEPFVTLSRKL 604 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL-LQEAGTQLESE 704 + + + + ++ A A + LLA GG +L + + L ++ A ++ Sbjct: 605 EALHRTALFQSLPELMDAFQEAFAVEPTLLAQRGGREKLANFRKLRALGVKGAMEDGDTA 664 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 +L + L +A E+D VQI+TIHKSKGLE+P V+LP ++ + Sbjct: 665 R---DFLDRLNLMRRLSARESAANQEADPEAVQIMTIHKSKGLEFPAVFLPDLSKKNHND 721 Query: 765 --QAFYHDRHSFEAVLD------LNAAPESVDLAEAERL--AEDLRLLYVALTRSVWHCS 814 + F + L + + E RL AE R LYVA+TR+ + Sbjct: 722 TLGIQFLPGQGFGVRVPDAQGNLLETSVYTRLKGEKARLERAEKQRQLYVAMTRAEKYLY 781 Query: 815 LGVAPLVRRRGDKKGDTDVHQSALGRLLQKG-EPQDAAGLRTCIEALCDDDIAW--QTAQ 871 L + + G + D D + G+ LQ+ P+ G + E L +I +T Q Sbjct: 782 L-INVDESKEGSRPPDPDKEKW--GQSLQRVFAPEGPHGDQMDWEKLDVAEILENQETGQ 838 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV 931 G + + ++ T+ R S S L + + Sbjct: 839 PGAGEAFVLDPAVYDRGRPVTVPRDLEL-----SASALLEYDTCPRSFYYHYF----RHM 889 Query: 932 ASVVEEPTLTPHQFPRGASPGTFLHSL-FEDLDFTQPVDPNWVREKLELGGFESQ-WEPV 989 + E GT++H + + + E L+ G E + + Sbjct: 890 PGIDPETVGEGSHRISAIDLGTYVHRVLELLQEEPEEEALAEALEVLDRTGAEKKVFARE 949 Query: 990 LTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAG 1049 + + +PL + L L A Q E +F LP+ Sbjct: 950 GRKLVEQYCASPLYQE---LKDLPA---QAERDFALPL---------------------- 981 Query: 1050 CPPLEFMQVRGMLKGFID-LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 + Q R + +G +D LV +GR ++DYK+ D + Y Sbjct: 982 ---FQLEQGRAVFQGSVDRLVTLPDGRLGIVDYKTGHPPTDGE-----------EKQGYT 1027 Query: 1109 LQYQLYTLA 1117 Q +Y LA Sbjct: 1028 RQLTIYALA 1036 >UniRef50_Q5GTB1 ATP-dependent exoDNAse (Exonuclease V) beta subunit, RecB n=26 Tax=Wolbachia RepID=Q5GTB1_WOLTR Length = 1119 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 198/1060 (18%), Positives = 379/1060 (35%), Gaps = 142/1060 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + ASAGTGKT + LRLLL + +TFT AA E+ RI Sbjct: 11 SVWVNASAGTGKTKILIDRVLRLLLENK-----------RNIFCLTFTNAAANEMESRIH 59 Query: 78 SNIHELRIACLRE-------------------TTDNPLYERLLEEIDDK----------- 107 + + + + E +P + + Sbjct: 60 NILSKWAVCSDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFN 119 Query: 108 --AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--------DES 157 A+ L +D + T+H FC ++++ E+G++ L E + Sbjct: 120 HYLIQARRLFSELENLD-LTIQTVHAFCYKLISSFPAEAGIVPNCTLSECKELHSIVFDK 178 Query: 158 LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPV---IKAPPPD 214 LL +A D + + + + T +++ + Y++G+ I + Sbjct: 179 LLHNEAVQDSIKFIAAEVDENKLRDLLYTLCIKRSVSANNLEYVKGKLSAPDEIHGLQSE 238 Query: 215 DETLASRHAQIVAR-----------IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQA 263 R A+I+++ +D + ++SS + N Sbjct: 239 ATEQIERLAEILSKGSKRDRNYSKMLDLTSSSFIQVADTRIQKLDSSATRWNDISIENLV 298 Query: 264 KWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSI 323 K K + ++ +S +LEKF + E ++ +F + + + + Sbjct: 299 KVFLKSESCEKKSISSIITKSTLEKF------PGAEQVIENIQNAVFTHVRDINSYQIFK 352 Query: 324 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAM 382 R + EK + L ++D++ + L + + + + + Sbjct: 353 RTSSFLDIFKVYIDLYNSEKSKNALLDYNDIIDLATNLLSNPDYKNWVLFNLDQKIDHIL 412 Query: 383 IDEFQDTDPQQYRIFRRIW-----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV 437 +DE QD Q++I + + + L ++GD KQ+IY F+GA+ + + Sbjct: 413 VDEAQDNSISQWKIIANLCDEFFIRNDEKRTLFVVGDVKQSIYRFQGANPHLFNCMQQYF 472 Query: 438 HAH--------YTLDTNWRSAPGMVNSVNKLFSQTDDA--FMFREIPFIPVKSAGKNQ-- 485 H L+ ++RS P + V++LF+ + F+ EI IP + + Sbjct: 473 HTKSGGKDWISCQLEKSFRSTPETLTLVDRLFNNFREEISFVDSEIKHIPYRENDQGYVE 532 Query: 486 --ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 L K E Q A+++ LM + + D +AQ A +I +WL G+ A Sbjct: 533 IWPLLPRCKEEEQQALQIHLMHRKDYIITD--RLLAQAIAHKIHNWLNEGRILVA----- 585 Query: 544 DDARPVRASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 R + DI +LVR R L IP V + + + + Q+++ L + Sbjct: 586 -KNRHIEPRDIMILVRQRNMLVDYVISELKKANIP-VVGRDYFRIMDYIAVQDLIALTEF 643 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ-IWRKRGVMPML 661 ++ P + L +AL + + D+ + D + E Y + I+ K + L Sbjct: 644 LLLPTNDLALANALKSPLFNFTEDDLFNIAYDRKEQSLW-ERLQNYSEDIYSKLNDLINL 702 Query: 662 RALMSARNIAENLLATAGGERRLTDILHIS--ELLQEAGT-----QLESEHALVRWLSQH 714 + S + ++L T G+++ L + E+L E + S A V+W+ + Sbjct: 703 SHIESPLTLFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFENPSLQAFVQWIKE- 759 Query: 715 ILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSF 774 N + ++S+++ V+I+TIHKSKGL+ P+V+L ++ D Sbjct: 760 ------NNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPKNSESIVLDAMGA 813 Query: 775 EAVLDLNAAPESVDLAEAERLA---EDLRLLYVALTRSVWHCS-LGVAPLVRRRGDKKGD 830 + N + ++L E LRLLYVALTR+ LG P+ + Sbjct: 814 PFLCGKNNNAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYILGKEPVQKG------- 866 Query: 831 TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNA 890 S + + GEP + + ++ A + A L Sbjct: 867 -----SWYDIITKYGEPYEKKYMELHQIFKEKVEVLCVNANYPYIYKKRDYFNIPAVLPP 921 Query: 891 KTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGAS 950 L L + + Y L + LD +T G + Sbjct: 922 PNLSILFQHSPSPSQYPLLSPQCFDTGIHSFSPLDSSVTHWDDKKRNTWMTD-----GYT 976 Query: 951 PGTFLHSLFEDLD-FTQPVDPNWVREKLELGGFESQWEPV 989 G +HS+ + + + NW+ + L+ + + Sbjct: 977 RGLIIHSILQYMPKIEKDRRKNWIGKYLDNINIRKNKDEI 1016 >UniRef50_C7RGF9 UvrD/REP helicase n=3 Tax=Anaerococcus RepID=C7RGF9_ANAPD Length = 1121 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 217/1201 (18%), Positives = 429/1201 (35%), Gaps = 208/1201 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 ++ A+AG+GKT + +RLL+ + ++VTFT A+ E++ RIR Sbjct: 20 NIIVSAAAGSGKTSVLVTRIIRLLIEDRK--------DIGSFIIVTFTNKASVEMKDRIR 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + E E+ K +++ + + A + T+H FC ML Sbjct: 72 TALEE--------------------ELKKKGSDLKFIKDQLKNLKHAQIKTLHSFCADML 111 Query: 138 NLNAF---ESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE--------- 185 N + + F+ ++L+ A + + + + + Sbjct: 112 RENFYYFDDLSPNFKVISENTATILKSNAIDEVFDKRYEQMDPAFENFLHNFATNKSDSG 171 Query: 186 ----TWKGPQALLRDINR--YLQGEAPVIKAPPPDDETLASRHAQIVARI---------- 229 K + ++ ++ +L ET+ S QI+ Sbjct: 172 AKDIILKTYEKIMAEVRPIAWLDQATSEGFKLDKFKETVRSEMDQILDLARTNYDFTMGQ 231 Query: 230 ---DTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 D ++ D +++ L D KF R +IS ++ Y + Sbjct: 232 GMRDKHQELIFDDFSQINDLTILLDKDWDKFIRKIGKIKFGRISKSKKDVEEDYSFIKDT 291 Query: 287 EKFSQRFLEDRTK--AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKR 344 + +++ K ++ LF ++ L +++ + + + R K Sbjct: 292 RDLYKEDIKNVAKFVTNTDSLTMELFAKKEEDLLSEINV-------LVKDFMKVYRRLKE 344 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 + L F DM + + E +R + DE+QD++ Q I ++ + Sbjct: 345 EKAYLDFSDMEHKFIDLIDIEEA---RNKLRETYKYIFFDEYQDSNEIQNYIIEKL---K 398 Query: 405 PETALLLIGDPKQAIYAFRGADIFTYMKA-----RSEVHAHYTLDTNWRSAPGMVNSVNK 459 E L +GD KQ+IY FR A+ +++ + + L+ N+RS +++ N Sbjct: 399 GEDNLFFVGDVKQSIYGFRRAEPKLFLEKLEAYDKDDKSVRIDLNKNFRSQKDVLDFDNF 458 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 +F D M +E I + G R F Q A Y+ Sbjct: 459 IF----DRLMTKEESDIDYRDGGH----RLNFNKNEQSA---------------YERANI 495 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 +V ++IR+ + E + G D R DI++L+RS ++ +A EIP Sbjct: 496 KVIDSKIREEDYLAKLIEEIRAMGYDYR-----DIAILLRSGGKSYVYEEAFKKAEIPFF 550 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE--TLNNDEHA 637 ++ S F +E + LL+ + P+ + TL S L + + + D+ L++D ++ Sbjct: 551 NDISKVS-FRAVEVTFFINLLKYLANPKDDLTLLSLLRSEIFDFDEDDLVEIRLSSDSYS 609 Query: 638 WDVVVEEFDGYRQIWRK-----------------RGVMPMLRALMSARNIAENLLATAGG 680 + +E+D +I K + + E LLA Sbjct: 610 FTKAFDEYDKDEEIVEKINDFKTIFADLTYVKNLLSLYEFANYVFEKTGFYEYLLARDRA 669 Query: 681 ERRLTDILHISELLQEAG-TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 R+ ++ +++ E T + ++ + S+ L + LV+I+ Sbjct: 670 SDRINNVESFIDIMDEYDRTNDNGLFGFLEFVDSLSIN-QSDNIQTTRELSEAEDLVRIM 728 Query: 740 TIHKSKGLEYPLVWLPFIT----NFRVQEQAFYHDR-------HSFEAVLDLNAAPESV- 787 TIHKSKGLE+P+V L N ++E + D +E L ++ +++ Sbjct: 729 TIHKSKGLEFPVVILADCGKRFNNKHLREPIVFDDDLGIGINLSDYENKLRFSSLRKNLI 788 Query: 788 -DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ---------SA 837 D E E++R+LYVA+TR+ + ++ G KG D S Sbjct: 789 NDKITKENKKEEMRILYVAMTRAEEMLFITGERNLKTVGRLKGRIDFLNMSTYMDWILSI 848 Query: 838 LGRL-----LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 L R L + +A +E + + D + + DV+ N Sbjct: 849 LSRDKVSEELFEEYETNALDGLASLEVIEESDPIDKFESKDITDFLKSEDVNQEIYNKLK 908 Query: 893 LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD------VDAAGVASVVEEPTLTPHQFP 946 + + +++ I++D P LD + +A + + Sbjct: 909 QIFDSPYPYEDQTRESIKRSVTEISKDFDPSLDGYRLPNYEENELAGDFRKANFIREEKS 968 Query: 947 -RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET 1005 + GT +H +F+ LDF + D ++E+++ + + + E Sbjct: 969 YKATDKGTMIHRIFQALDF-KDYDKVSLKEEIDRL----------------IREKRIEED 1011 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 + L L E F IS+ + ++ L + G Sbjct: 1012 SLDLVDLDKILGFFEDPFIKDISQKAT-----NIRKEESFLMTYEDY--------YVNGQ 1058 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL+F + + L+D+K++ + + Y Q Q+Y A+ + L + Sbjct: 1059 IDLIFEIDDKVILIDFKTDR---------------TKRENLYKKQIQIYRQAIEKSLGKK 1103 Query: 1126 I 1126 + Sbjct: 1104 V 1104 >UniRef50_C8WQE1 UvrD/REP helicase n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WQE1_ALIAD Length = 1240 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 254/1253 (20%), Positives = 423/1253 (33%), Gaps = 205/1253 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 ++ A AG+GKT +A L G +++LLV+TFTEAA E+R RI Sbjct: 19 NLVVSAGAGSGKTAVLAERIASLAEGDP-------KFRMDQLLVMTFTEAAAEEMRARI- 70 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 E+ + +A ++ LA R D A + TIH FC +L Sbjct: 71 -------------VRRLAERAAEAEQAGESVKARRFSRLAHRAND-AQISTIHSFCLSLL 116 Query: 138 NLNAFESGMLFEQQLIEDESLLRY-----QACADFWRRHCYPLPREIAQVVFETWKGPQA 192 +A E+G++ +++ E QA D W RH P+ + Q Sbjct: 117 RDHAVEAGLVPGFRVLSGEEDAVLLRGAAQATLDEWARHLERGPQLCTALAALRLHRQQQ 176 Query: 193 LLRDINRYLQ---------GEAPVIKAPPPDDETLASRHAQIVARIDTVK-----QQWRD 238 + + + G I D A A+ AR +K + + Sbjct: 177 AVNGVLELCRVALSQVDPGGWLAEIARHYDADGLWAGPFAEAFARWARMKVARAVEHMQR 236 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED-- 296 + EL+ + + + + K + + + +L + S R ++ Sbjct: 237 GLAELERMRAPEKVVAGALSILSNLKEALALLSTPGAPLDPDRLAPLVHWESARLSKEYE 296 Query: 297 -------RTKAGGETPRHPLFEAIDQLLAEPLSIRDL--VITRALAEIRETVAREKRRRG 347 + + R L L A+ ++R V+T + + Sbjct: 297 PFKKWRGKANEAMKLLRKVLRRGRAALEADVRAMRPHIEVLTGVARDTLARAQSRRLEEN 356 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 L F D+ L + G + AA+ R+ +DE+QDT P Q I + P Sbjct: 357 RLSFSDLEHLAHELLAKDEG--VRAALHARYRYVFVDEYQDTSPIQDAIVDAVA---PPG 411 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMK-----ARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 L L+GD KQ+IY FR A+ ++ A + L N+RS G+V VN LF Sbjct: 412 GLFLVGDVKQSIYGFRMAEPGLFLARYRRYAEKDGGEAIDLSANYRSRSGIVRFVNYLFG 471 Query: 463 Q-----------TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 Q D M E + ++ F G+ E E Sbjct: 472 QLFHADVAGFDYADGHEMKPEAAYPDDDGGPCPVKIKLFFSGDAGNDRVEETEEPERADA 531 Query: 512 ----------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 + A A QI L+ ++ RP+R D+++L+R+ Sbjct: 532 KGEDEDEQVAREKLEIEAMWVADQIARALE--RQERVYDRAAKAYRPLRYQDVAILLRAG 589 Query: 562 QE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 E V L IP+V S+ F +E + + LL A+ P L +AL + Sbjct: 590 GENLNTVVQVLASRGIPAVARSS-SGFFRAMEIRWAVSLLTALDNPLDSLALAAALKSPF 648 Query: 621 MGLNALDI-----------------ETLNNDEHAWDVV---VEEFDGYRQIWRKRGVMPM 660 +GL+ D+ E + E A D + VE + +R + + Sbjct: 649 VGLSDDDLAAARIACPRGPLWHAVREAARDTEGARDALRLAVERLERWRGLAHTLAPGDL 708 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 LR + I L A G R ++ + L Q + + + + + E D Sbjct: 709 LREIAREVEIDLYLRAMPRGLARAANLEQLIRLAQSHAPHAGDLYRFLA-MVRGLEEADV 767 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF--YHDRHSFEAVL 778 + + V ++TIH SKGLE+P V++ + + H R A + Sbjct: 768 DLGHAH---GASADSVAVMTIHGSKGLEFPHVYVLCLGRQFPHNKRTLALHRRLGIGATM 824 Query: 779 -DLNAAPE-------SVDLAEAER-LAEDLRLLYVALTRSVWHCSLG--------VAPLV 821 D+ +VD A E AE+ R+LYVALTR+ L +A Sbjct: 825 CDVQTGVHWRTVPSIAVDQANLEASRAEEARVLYVALTRAKERLVLVGHAGKVAKLADAA 884 Query: 822 RRRGDKKGDTD----------------VHQSALGRLLQK------GEPQDAAGLRTCIEA 859 D+ T + + G L+K DA G+R +E Sbjct: 885 EGHDDEGRLTPEAFLKGNSYASWILPALMRHPDGAWLRKEAGDARAALLDAPGVRFELEV 944 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW-----RVTSY---SGLQQ 911 D Q + + ++ E+ + + G W RV S S + Sbjct: 945 EVDGRPQGQESGEPRSSLFKAPLPPAEEVERELRRLWQGPAWRYRAVRVASEQRGSRVSL 1004 Query: 912 RGHGIAQDL-----MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 A D+ L SV+E+P G H+ + Sbjct: 1005 PSKLTATDIRRLFAERELRARGRHAGSVLEDPAFVRQSGASPRERGVAFHAFMQRAPMQP 1064 Query: 967 PVDPNWVREK----LELGGFESQWEPVLT-EWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 +P+ VR LE G + + L + + A +PL L+A E Sbjct: 1065 YANPDDVRRAAQALLEQGLLDERMASALDPDDVLAFFASPLGRRV-----LAAGEVYREQ 1119 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 F+ + +Q ++ +G ID + R Y ++DY Sbjct: 1120 PFFYRLDVRAGDAQAPVVV----------------------QGVIDCLIRDARGYAVIDY 1157 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHH 1134 K++ + + S + A Y+ Q Y A+ + Y Y H Sbjct: 1158 KTDQVRDAS---DLDRLVRA-----YEPQVATYAAAVREAVGTEPEVYLYFVH 1202 >UniRef50_B0CJK2 Double-strand break repair helicase AddA n=35 Tax=Rhizobiales RepID=B0CJK2_BRUSI Length = 1180 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 220/1182 (18%), Positives = 410/1182 (34%), Gaps = 166/1182 (14%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + A+AG+GKT + +RLLL ++L +T+T+AA A ++ R Sbjct: 22 SASVWVPANAGSGKTHVLTERVIRLLLEGT---------DPSKILCLTYTKAAAAVMQNR 72 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA-------AVFT 128 + + E + + LE+++ + A L A R A + T Sbjct: 73 VFMRLSEWAV------LPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQT 126 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFET 186 IH FC+ +L+ E+ + ++++D ++ L +A +A + Sbjct: 127 IHAFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADV 186 Query: 187 WK-----GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV- 240 + G Q+LL + G + + + H D + + Sbjct: 187 LQAAGETGLQSLLDEAVGRRNGLQLYLAELGVGTHRMEALHRAFGFEPDAREDDLLADLW 246 Query: 241 -------GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEET--NSYQLPESLEKFSQ 291 LD ++ R + + Q K ++K S ++ + L + E S Sbjct: 247 PVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTGEPKSG 306 Query: 292 RFLEDRTKAGGETPRHPLFEA--------IDQLLAEPLSIRDLVITRALAEIRETVAREK 343 ++ F+ +D+L L +L + + + K Sbjct: 307 SYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELRLVRLNLAALTLIDNLLQRYHDLK 366 Query: 344 RRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 RRG L F+D+++R + L R+ +G+ + + ++DE QDT P Q+++ R + Sbjct: 367 CRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRMLSE 426 Query: 403 H--------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV----------HAHYTLD 444 + L +GD KQ+IY+F+GA + + + +L+ Sbjct: 427 EFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAELKFERVSLN 486 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF--VFKGETQPAMKMW 502 ++RS P ++ +V+++F++ + + + + E W Sbjct: 487 FSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPEMVEEPDDW 546 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 + + + +A+ AA IR WL G+ R + DI VLVR R Sbjct: 547 RVPVDQLAAPAVR--LAEQIAATIRYWLDRGEPI------PGQNRKIAPRDIMVLVRKRD 598 Query: 563 E-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 + + AL L +P V ++R + + Q+++ L + V+ P + +L + L + + Sbjct: 599 QFMPALSRALKNLSVP-VAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLAALLKSPLF 657 Query: 622 GLNALDIETLNNDEHAWDVVVEEF----DGYRQIWRKRGVMPMLRAL---MSARNIAENL 674 G + + TL A D + E ++ + ++ R + M + Sbjct: 658 GWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMPVFEFYARV 717 Query: 675 LATAGGERRLTDIL--HISELLQEAGTQ-LESEHALVRWLSQHILEPDSNASSQQMRLES 731 L+ G R+L L +++ E L +E A + L + ++ A + L+ Sbjct: 718 LSADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQ 777 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPF-----ITNFRVQEQAFYHDRHSFEAVLDLNAAP-- 784 + V+I+T+H +KGLE +V+L T R + Y + V P Sbjct: 778 GRDEVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNS 837 Query: 785 ---ESVDLAEAERL-----AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 AE E+L E RLLYV +TR+ + R G+ Sbjct: 838 SCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDAL 897 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 A A R +I + + P +D L R Sbjct: 898 AAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRP 957 Query: 897 PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLH 956 + S L + D P LD+ + + P + GT +H Sbjct: 958 LAPSGA----SALIEA------DEEPPLDLSSPVLQPGTGAPAFALRR-------GTAIH 1000 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPV--LTEW--ITAVLQAPLNETGVSLSQL 1012 L E L P + L + W L W + A+L P Sbjct: 1001 MLLEYLPDVAPEKREHLAADY-LARIAADWPDAERLKAWQSVHAILDDPRFGPVF----- 1054 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + ++ E + +D R + G ID + Sbjct: 1055 AEGSR----------GEVAVMGMIDIGGRDHA-----------------VSGQIDRISVD 1087 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 E R ++DYK+N T +A+ +A Y Q LY Sbjct: 1088 ESRVLIVDYKTNR----PPPKTLEAVPSA-----YRAQLALY 1120 >UniRef50_Q0G5V0 Helicase, UvrD/Rep family protein n=2 Tax=Aurantimonadaceae RepID=Q0G5V0_9RHIZ Length = 1211 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 213/1203 (17%), Positives = 404/1203 (33%), Gaps = 172/1203 (14%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AG GKT + +RLLL ++L +TFT+AA AE+ R+ Sbjct: 23 SVFVSANAGAGKTHVLTERVIRLLLA---------GFDPSKILCLTFTKAAAAEMSNRVF 73 Query: 78 SNIHELRIACLRETTDN-PLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + + + D E + + QA Q A + TIH FC+ + Sbjct: 74 ARLGAWAVMDGEKLADEIAKLEGHTPKPERIDQARQLFARALETPGGLKIQTIHAFCEAI 133 Query: 137 LNLNAFESGMLFEQQLIEDESLLRY------------------QACADFWRRHCYPLPRE 178 L+ E+ + ++++D + AD R Sbjct: 134 LHQFPLEANVAGHFEVLDDGESRLMLGEVRRRLVTGAAALAAGREAADELREAFAEALAI 193 Query: 179 IAQVVFETWKG-PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 + F+ DI R+++G + A + L A I +V Sbjct: 194 GGEFGFDGLLTEIVQKRDDIRRHIEGCGGLEGAIAFLADALGIDPNTDEAAIISVLGPIP 253 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 ++ K A+ + ++A A+ L + + + Sbjct: 254 GLDPSTCEIVRHLAERSDKKTDQRLAESLPDLAAAADPLERLALLKQIVMTQAGGRRASV 313 Query: 298 TKAGG-------ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR----EKRRR 346 + E ++ +++ +RA I + + R KRRR Sbjct: 314 ATKVVTGELPDLDERVAEAQEYVETAEDRLAALKLFRASRAALVIADALERDYALLKRRR 373 Query: 347 GELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH--- 402 G L F D+++R L RSE+ + + +IDE QDT P+Q+++ R++ Sbjct: 374 GRLDFTDLIARTADLLTRSEAASWVHYKLDQGIDHILIDEAQDTSPRQWQVMRQLVDEFF 433 Query: 403 -----HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDTNW 447 H + +GD KQ+IY+F+GA + R V A +L+ ++ Sbjct: 434 VGRSTHNRTRTVFAVGDEKQSIYSFQGASPHMFDLERRVVKAKADEAGLKFTPVSLNQSF 493 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ-----ALRFVFKGETQPAMKMW 502 R+ ++ +V+++F ++ P ++ + + + E+ W Sbjct: 494 RTLETVLGAVDQVFEAPENRRGLSTGGERPTHTSARQDGEGLVEIWPTIRAESTVEPDNW 553 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 L + +AQ A QI +WL ++ RP+ D+ +LVR R Sbjct: 554 LDPMDEEPKSSPAYRLAQRIADQIAEWLGD------PIVEKGRIRPLDPGDVMILVRKRT 607 Query: 563 EA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 + AL I SV ++R ++ E + Q+++ L + E + +L + L + + Sbjct: 608 NFIPAMAAALRERGI-SVAGADRLTITEHIAVQDLIALGRVAANFEDDLSLAALLKSPLF 666 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGY--------------------RQIWRKRGVMPML 661 ++ L + + R + + + L Sbjct: 667 EFTDDELMALALSRGPLEHLSAGLRKLGGEEGPGRVPDWFPDGEPAARLLEKAHHAIERL 726 Query: 662 RALMSARN------IAENLLATAGGERRLTDILH------ISELLQEAGTQLESEHALVR 709 L + +L GG +L L I L A L + A V Sbjct: 727 DELRNRTGFESVFTFYARILGPEGGRSKLMARLGRDTADVIDAFLDLA---LSEDTAGVS 783 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN---------- 759 L + + ++ + +E + V+I+T H SKGLE P+V+L + Sbjct: 784 GLDAFLSDLEAAPPEIKREMEGGRGEVRIMTTHASKGLEAPVVFLVDPGSAPFHGSHGSR 843 Query: 760 -FRVQEQAFYHDRHSFEAVLDLNAAPESVDLA-----EAERLAED-LRLLYVALTRSVWH 812 R +E + + E+ +A E +R E+ RLLYV +TR+ Sbjct: 844 LMRWEEMPRLLADQAPGFLWRAAKEVENSAIAALREIEKQRAEEEYRRLLYVGMTRAAER 903 Query: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 + R ++ + +SAL E D AG C I + Sbjct: 904 LVI-CGMAGTRGPSEEAWREKVESALKP--HAEEITDMAGDPVCWR------IGSRRMGK 954 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVA 932 + + +++ L+ L+ +T S A +L + + Sbjct: 955 PETERPDAANLAVRALDLSRLEEEVAPPRPLTPSSA---GAAFEADELESSVLEEQNTAE 1011 Query: 933 SVVEEPTLTPHQFPR-GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLT 991 + P L P G G +H L + L + E Q Sbjct: 1012 TAYASPVLGTAATPSLGIQRGLVVHRLLQHLPTLASEERERAAEAYVRRAL-PQVGDTHR 1070 Query: 992 EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP 1051 + + A +Q +++ + + A + E+ I+ + + + + Sbjct: 1071 KQLLASVQRLMDDPAY--AAIFAEGSRAEV----AIAGTVRIGRTNYAV----------- 1113 Query: 1052 PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW-----LGEDSSAYTQQ-AMAAAMQAH 1105 G ID + + ++DYK+N L E Y +Q A+ A+ Sbjct: 1114 -----------NGTIDRLVVTDRDVLIVDYKTNRPPPQTLAEVPKDYVRQLAIYRALVMQ 1162 Query: 1106 RYD 1108 Y Sbjct: 1163 LYP 1165 >UniRef50_Q0FE31 ATP-dependent DNA helicase, UvrD/Rep family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE31_9RHOB Length = 1125 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 216/1175 (18%), Positives = 428/1175 (36%), Gaps = 182/1175 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AG+GKT + RLLL +++L +T+T+AA AE++ R+ Sbjct: 19 NTWVSANAGSGKTRVLTDRVARLLLNNT---------DPQKILCLTYTKAAAAEMQNRLF 69 Query: 78 SNIHELRI---ACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 ++ + + LR + D QA A + TIH FC Sbjct: 70 DSLGKWAMLPDEELRTELKSLGENENTLSPDKIKQARTLFAAALETPGGLKIQTIHSFCD 129 Query: 135 RMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 +L E+G+ + ++E+ LR + ++ +A+ + Sbjct: 130 ALLRRFPLEAGVSPQFNMLEERQAKQLRIEVVERMAQQSETSEIDMLAKHLTRL--NTDD 187 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGI 252 L +I + G AP P D ++ + + + D + L L+++ Sbjct: 188 LTNEIVKKRTG---FDIAPTPKDFGISQDIS-LDKIFNERINPHNDIINSLIELLKT--- 240 Query: 253 DRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE--------- 303 N K DK+ + + TN+ +L + LEK FL +T G Sbjct: 241 -----GSKNDMKAADKLREYFLDNTNNTKL-KILEKV---FLNGKTAKAGPYSAKENVAT 291 Query: 304 ----TPRHPLFEAIDQLLAEPLSIRD-----------LVITRALAEIRETVAREKRRRGE 348 H F+ ++ + + R LV+ + + K Sbjct: 292 LKLIPKTHSFFDIQSKISKDVEATRKCRLAINAYNKTLVLHSFAQSFLKAYDKRKAFNAY 351 Query: 349 LGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---- 403 L +DD+++ L S S + + + ++DE QDT P Q+ + + Sbjct: 352 LDYDDLINLSSKLLTSSSMAQWVLYRLDGGLDHILVDEAQDTSPAQWAVIDCLAREFTYG 411 Query: 404 ----QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY----------TLDTNWRS 449 +L ++GD KQ+IY+F+GAD + + +SE + L ++RS Sbjct: 412 ISANDRPRSLFIVGDEKQSIYSFQGADPDIFSEKKSEFRDLFQHINQDMESRELLYSFRS 471 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 AP +++ V+++F+ + + G+ F+ K + QP ++W + Sbjct: 472 APKILSLVDQIFTDENIKNPKSKHKAFHDSKPGRVDLWPFIEK-QNQPDKEVWYRPVDMP 530 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR------QE 563 D + +A++ A I+ LQ+ Q ++ RPV DI +LV+ R Sbjct: 531 APNDPKQELARLIAKSIKGILQSKQTINV----DNELRPVNPGDILILVQGRETQSSSSL 586 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 ++ L +P V ++R +V + L +++L LLQ + +L A+ + ++GL Sbjct: 587 FKEILKELKSSNLP-VAGADRLNVGDELAVRDILSLLQFANMANDDLSLAEAMRSPLLGL 645 Query: 624 NALDIE--TLNNDEHAWDVVVEE---------FDGYRQIWRKRGVMPMLRALMSARNIAE 672 ++ W + ++ R ++ +++ E Sbjct: 646 TENELFKTAHKRQGTLWQSLRDQNHHTNALAILTDIRNQVGYLRPYELIERILTKHRGRE 705 Query: 673 NLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 LLA G E +++ LQ + + ++W + + R Sbjct: 706 KLLARLGSEVEDGIDELLAQSLQYEALEPPTLSGFLQWF--------VSGEVEIKRDMGK 757 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA---FYHDRHSFEAVLDLNAAPE--SV 787 + ++++T+H SKGLE P+V LP + + + A ++ + + D + + + Sbjct: 758 GNQIRVMTVHGSKGLESPIVILPDTGDKSLPQNAQITLSNNSSVWRSTGDEGSEIQNNAE 817 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 + + ++ E +RLLYVALTR+ + A R +++ ++ + AL L Sbjct: 818 KVIKEKQTQEKMRLLYVALTRAESWLIICGAG---TRKNERSWYNLIKGALVSL--NASK 872 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 D + E L D W++ + + ELN K + W + + Sbjct: 873 NDFKDIG---EGLLFKDNNWESLSVKEK---------SGELNTK---KNTYPKWLMKN-- 915 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF-TQ 966 ++ Q L P V + + + G LH + E L + Sbjct: 916 --AKKIDRPKQTLAPSNLVGEKTLQNTFNSSNSDAKEL------GKILHKILEFLPNIPK 967 Query: 967 PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 ++ E F ++ ++ L +SL + F+ P Sbjct: 968 NQWEVFLNGFFESNNFG----------VSDEIKDSLILEAISLLENPTLTYI----FFTP 1013 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 + +++ P L + G+ID + + +D+KSN Sbjct: 1014 NGLSEV------------GITSHIPQLNNNIL-----GYIDRLIIDKDTITAIDFKSN-- 1054 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 S + + + + A Q +Y LAL + Sbjct: 1055 --VSIPISDEEIPKGILA-----QQAVYLLALQKI 1082 >UniRef50_A4BQ40 Possible ATP-dependent exodeoxyribonuclease subunit A n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQ40_9GAMM Length = 1117 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 224/1152 (19%), Positives = 402/1152 (34%), Gaps = 159/1152 (13%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L L + L+EA AG+GKT +A + L + + + +TFT Sbjct: 9 QRLRALTA-IDSTLLVEAGAGSGKTALMAGRIVYSL---------AQGIEPGRIAAITFT 58 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 E A +L RIR + LR T L + + D + L A ++ E Sbjct: 59 ELAAGQLLIRIRGFLERA----LRGETPVELQAAFPKGLSDAERI--RLTTARERLAELT 112 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPR--EIAQ 181 TIHGFCQ+++ E+ + +++ + L F R + Sbjct: 113 ATTIHGFCQQLIRPYPVEADIDPGAAIMDAPAAELAWQDLLEAFLRERLEAADEGDPLVA 172 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD-ETLASRHAQIVARIDTVKQQW---- 236 + A + I R+L+ D + L S H + A + +++Q Sbjct: 173 FIEAAGANSAAEIDRIARFLRRSRSTDPVAAQDATKWLESLHEAVTALANWLQEQLCSEP 232 Query: 237 --RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF----- 289 + V EL AL++ + RR + + + A+ +++ + K+ Sbjct: 233 STVELVAELRALVQ---VYRRALQHGASPRALMAL-AFVPPRCSAHTQKLTFRKWGRQGK 288 Query: 290 --SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV-------ITRALAEIRETVA 340 S +KA G + A +++ V + +L + E Sbjct: 289 WQSAATASGLSKAAGTALSREGEALYQVVGAACTALQGAVAIGAFEQLAESLRPLLERYQ 348 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 KR L FDD+L+ + LR + E + A+ R+ ++DEFQDTDP Q I R+ Sbjct: 349 DYKRAAALLDFDDLLATACALLRDPANEPVRRALSARYRYILVDEFQDTDPLQVEILWRL 408 Query: 401 WHHQPE-----------TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLD 444 AL +GDPKQAIY FRGAD+ TY+ AR + A + Sbjct: 409 CGEGTHDTPWQERVLRSGALFCVGDPKQAIYRFRGADVATYVAARERLKAADPECILEVT 468 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS ++ VN+ F+ P V G + P + + Sbjct: 469 ANFRSYRPILEWVNERFA----------APLTAVGQPGFQPLAPTRTPPDDAPRVVRLTV 518 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + S + A ++ + Q G + G RP R DI +L S E Sbjct: 519 PVAAADDKPRPSECREAEAQRVAELCQRLIGGYP-IHTGRRPRPCRPGDIVLLAPSGTEL 577 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 + AL + +V F E Q+++ + + + L + L ++GL Sbjct: 578 WRYERALEDRGV-AVASQAGKGFFRRQEIQDLIAITRVLADARDTVALGALLRGPLVGLT 636 Query: 625 ALDIETLNND-----------------------EHAWDVVVEEFDGYRQIWRKRGVMPML 661 + + + + +E +L Sbjct: 637 EEALLDIVDQLPPPEDCAGSARLTLWTEPAYVADTLARTTLEILQALAARALDTTPFALL 696 Query: 662 RALMSARNIAENLLATAGG--ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 ++ ++ L+ G ER L ++ E+ ++ + L + + + Sbjct: 697 GQAVAELHVRPLLIHRHSGGAERALANVELFLEM-----SKPYAARGLFAFAADMRTRWE 751 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD 779 +S + R ++ +H V ++T+H +KGLE+P+V + DR Sbjct: 752 DAEASTEGRPDAQEHAVHLITMHSAKGLEWPIVIPVNTVSEGRAAGGPLFDRSDQRIHYC 811 Query: 780 LNAAP-----ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 L A ++D +AE+ E +RLLYVA TR+ L + + G + Sbjct: 812 LGAFRAERYVTALDEEKAEQRREQVRLLYVAFTRAEQLLVL-----PQPLEAESGWFGLL 866 Query: 835 QSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 L +L D G + + + I Q D +Q + Sbjct: 867 DLRLDQL----PTLDDGGWGSSLP----ERIPAQIINGQDRVRFQHEAQRIQAARRALV- 917 Query: 895 RLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTF 954 WR S + G A + V A A + GA GT Sbjct: 918 ------WRRPS----EHEPAGAAPSMAEESSVFAEPAADAMSPAE-------GGALRGTV 960 Query: 955 LHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSA 1014 LH L E++ T+ VD + +Q P V P++++ L+++ Sbjct: 961 LHKLMEEV-LTEEVDEAAQVLQTRAAELLAQLAPA------PVEAPPISDSPAELAEVVR 1013 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 R ++ P++ + L+ + P+ E + ++ G D + Sbjct: 1014 RT----------LALPVVVALRTRLLAEV-PIYDCYKVAEAPRAETLISGVADALALGVD 1062 Query: 1075 RYY--LLDYKSN 1084 ++D+KS+ Sbjct: 1063 GTVEAVIDWKSD 1074 >UniRef50_UPI0001C37CA2 recombination helicase AddA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CA2 Length = 1213 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 220/1261 (17%), Positives = 451/1261 (35%), Gaps = 200/1261 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 ++ A+AG+GKT + ++L+ A + + ++VVTFT A +EL+ R+ Sbjct: 17 SVIVSAAAGSGKTAVLTERLVQLM------ADPESGVRADRIVVVTFTNDAASELKKRLD 70 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + L +++P LL + + A + TI+ FC ++ Sbjct: 71 MKLRAL-------ISEDPSNGHLLRQQT--------------LLQSAKISTINSFCFDLI 109 Query: 138 NLNAFESGML--FEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 N + G+ F D ++L+ +A + + +I+ + + + LR Sbjct: 110 RDNISDQGITTGFGVLDESDNTVLKARAMDELFEEMSRDEYDKISFLYDKFCIRNEKRLR 169 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQ--------------IVARIDTVKQQWRDAVG 241 ++ + G + +TL S + + + + ++ + + Sbjct: 170 EVISLMDGFLASVSLREKWLDTLTSEYEKPLEDSVYYEKLRVSVASILEKALRTADSCMA 229 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAW--------------AEEETNSYQLPESLE 287 + + + + DK+S E ++ L + Sbjct: 230 LIGRIFPDMSAAAAVKSAAQAEDDYDKVSDLLAIIRKGRIPDSEECERASSFSDLVRVGK 289 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLA-EPLSIRDLVITRALAEIRETVA----RE 342 + L + K E+ + + +AID + + E +++ LA++ Sbjct: 290 TAHDKPLREMYKKKRESVKKLVLKAIDSIRSVESDYAESAEVSKMLADVMRKYQDIVWAM 349 Query: 343 KRRRGELGFDDMLSRLDSAL--RSESGEVL----AAAIRTRFPVAMIDEFQDTDPQQYRI 396 K + + FDD L E+G ++ A + + MIDE+QD++ +Q I Sbjct: 350 KCEKNSISFDDGERLALELLADTDENGNIIQSEAALKTSEYYDIIMIDEYQDSNNKQDLI 409 Query: 397 FRRIWHHQP---------ETALLLIGDPKQAIYAFRGADIFTYMKARSEVH--------- 438 F+ + + + L+GD KQ+IY FR A+ ++ Sbjct: 410 FKLLSKNYRTDENGQPLYGDNVFLVGDVKQSIYRFRLANPRNFIGTLKSAEPYSVESDAP 469 Query: 439 -AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 L+ N+RS+ +++ VN +FS+ K + R + +++ Sbjct: 470 IKSILLNRNFRSSENVIDFVNYVFSEVMSEKCGDIDYSDDEKLYFGAEYYRGISDEKSRT 529 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + + + + A A I + L +G ++ N RP R SD +L Sbjct: 530 VINFINDDADEEEEDGNINKEAVFTAQTIAEMLH---KGTEVVGNDGSTRPCRPSDFCIL 586 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 VR+ + + L+LL +P+ S + E ++ LL+ V P + + + + Sbjct: 587 VRNNVHINKYAEQLSLLGVPA-KGSEESGYLRSREIAVLIDLLRVVSNPLLDIPMAAVMT 645 Query: 618 TSMMGLNALDIETLNNDEHA------------------WDVVVEE--------FDGYRQI 651 + M + ++ + + E +D+ + E D +R Sbjct: 646 SPMYMFSIRELAYIRSLEKGRPLYSVLRGLADGEYEECFDMFLRERCRDFLDSLDSFRMD 705 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ--EAGTQLESEHALVR 709 + ++ ++ + + + GE++ ++ + + Q E E L Sbjct: 706 SVTMTIGELISSIYDTTDFISVMQLYSDGEKKRANLRALIQYAQSYEESAAFEGSGGLGG 765 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYH 769 +L ++ +Q S V ++T+H+SKGLE+P V++ + + Sbjct: 766 FLRHLDKVMENGDYAQGKVAASSGDYVSVLTLHRSKGLEFPFVFIAETSTKFQYDSDIVM 825 Query: 770 DRHSFEAVL---------DLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCS--LG 816 A +S+ +E ER +E++RLLYV LTR+ L Sbjct: 826 CSSDGRAGYILYDPKIYRKYRTFQQSILASEEERDTRSEEMRLLYVGLTRAKQKLFVDLK 885 Query: 817 VAPLVRRRGDKKGDTDVHQ----------------------------SALGRLLQKGEPQ 848 +R K ++ + SA+ L E Sbjct: 886 CGEKAMKRVRSKLESCIINDGDISEIVAEADYFSDWIWAALMHHSDFSAIAEKLGLTEAG 945 Query: 849 DAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 ++ C E L D A + ++ + E L+ L D++ T Sbjct: 946 ESVPDVRCEEKLFDCVFAENISPVYIDRDEAAEKTTADEAVYTELEELVSDSYDRT---- 1001 Query: 909 LQQRGHGIA-QDLMPRLDVDAAGVASVVEEPTL-TPHQFPRGASPGTFLHSLFEDLDFTQ 966 L + ++ ++ +L ++ ++ P T G+ GT +H+ F+ DF Sbjct: 1002 LSETPAKLSVTEITKKLKQESDNFDYKLKRPRFITGSGKLTGSERGTAIHTFFQYCDFDN 1061 Query: 967 P-VDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ-VEMEFY 1024 D + E + GF + + + I+ + +G+ +A +K E +F Sbjct: 1062 AQADVSAEIEAVAKRGFITSAQADV---ISPEKASAFFASGLYKRIRAAGDKVWREKKFM 1118 Query: 1025 LPISEPLI-ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 + +++ I + LD L + GM+KG +DLVF + ++DYKS Sbjct: 1119 VAVADLDIGSDALDQL----------------KKSDGMIKGIMDLVFEEDDGLIIVDYKS 1162 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLF 1142 + G + A + RY +Q LY A + ++ Y Y I +F Sbjct: 1163 DR-GASAKA----------LSERYSMQLTLYKAAAELTMHKKVKAAYLYSFELEKEIEVF 1211 Query: 1143 L 1143 L Sbjct: 1212 L 1212 >UniRef50_B9R0C4 Double-strand break repair helicase AddA n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R0C4_9RHOB Length = 1180 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 208/1197 (17%), Positives = 400/1197 (33%), Gaps = 162/1197 (13%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + + A+AG+GKTF ++ +RLLL +L +TFT+AA AE+ R Sbjct: 30 RASAWVSANAGSGKTFVLSRRVVRLLLDGT---------DPSRILALTFTKAAAAEMATR 80 Query: 76 IRSNIHELRIACLRETTDNPL-YERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 + + + E + A A + A + TIHGFC+ Sbjct: 81 VFKILGTWVTMDDADLAKELFEIEGRHPDAARIAMARRLFARALETPGGLKIQTIHGFCE 140 Query: 135 RMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE------- 185 +L+ E+ + +++D + L +A A + Q + Sbjct: 141 ALLHQFPLEANVAGHFNVLDDRIAAELMAEARASVLHKAEMEPDSPFGQALASVIDLMSD 200 Query: 186 --TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 K L+++ + + + P ++ +++R Sbjct: 201 GGAQKALDELIQNRDAFRRWTVDAGGLEPALHALADDLEIDPAQQLSDFDRRFRSECPFD 260 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 S +++Q K ++A + + ++ L F LE R + Sbjct: 261 LNTCLSYSEALNTGTKTDQGKAEALVAAIRQTDPGLFRE-AWLPVFLTGKLEARKSLATK 319 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLV--------------ITRALAEIRETVAREKRRRGEL 349 + +D L+AE + +L+ + R + R K +G L Sbjct: 320 KVTEAFPDMVDALIAEQARLLELLDERRKVVTYAGTVALLRLADAVITYYERAKTAKGYL 379 Query: 350 GFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW------- 401 F+D++ + + L +S++ + + + ++DE QDT P+Q+ + + Sbjct: 380 DFEDLVVKTATLLAKSDAAQWVQYKLDQGLDHILVDEAQDTSPRQWEVVNALAAEFFVGD 439 Query: 402 -HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDTNWRSA 450 + L +GD KQ+IY+F+GA + + R L ++RS Sbjct: 440 SGREKVRTLFAVGDEKQSIYSFQGAVPAYFDQMRRAFSRQAQSAEQEFHSVNLQLSFRST 499 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA----LRFVFKGETQPAMKMWLMEG 506 P ++ +V+++F + PV A + L + W + Sbjct: 500 PDVLGAVDEVFKDASAYQGLSQDGVAPVHEAIRLDPGIVDLWPLETEAEVSEPDDWRLPV 559 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA-A 565 + G G +A+ A+ I+ W+ G D+ +LVR R Sbjct: 560 DHVGSGSPMLKVAKRIASTIKGWMLDG--------------TAEPGDVMILVRKRGPFVE 605 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 + L L IP+ S+R + + + Q++ L + ++ PE + +L + L + + GL+ Sbjct: 606 ALNRELKNLNIPAA-GSDRLILTDHIAVQDLAALGRFLLLPEDDLSLAAVLKSPLFGLDD 664 Query: 626 LDIETLNND-------EHAWDVVVEEFD---GYRQIWRKRGVMPMLRALMSARNIAENLL 675 +D+ + + W ++V+ + ++++ R+ + LL Sbjct: 665 MDLLEVARETDEKIRPGTLWQMLVKRSEASTKWQEVRRQLEDWRARADFVPPYEFYARLL 724 Query: 676 ATAGGERR------------LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 GG + L + L ++ ++AGT + W++ + + Sbjct: 725 GADGGRQAFRRRLGVEVDDVLDEFLALTIAYEQAGT--PGLEGFLAWMA-------AAPT 775 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV---------QEQAFYHDRHSF 774 + L + K +V+I+T+H SKGLE +V L V HD Sbjct: 776 EIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGGAPVSAIHDPSFLPRPRPGHDLSPP 835 Query: 775 EAVL------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 V ++ E+V+ + E RLLYVALTR+ + R D Sbjct: 836 SLVWLPPKTDRISWHDEAVETLRKGQEEEYRRLLYVALTRAEDRLIVCGWEPKRGAHDNC 895 Query: 829 GDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL 888 + V + L + + A D A P VS + Sbjct: 896 WYSLVSAA----LKPQAKELHDADGDVVGWRWQKDPSAGTGRAPSPGHPRTDASVSGDDH 951 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG 948 P S + A + M D A P +P Sbjct: 952 TLPDWAHQPVKPV-----SRKIRLQPSKAFEDMEDKDGIEPVPAVARLAAGRQPDSWP-- 1004 Query: 949 ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVS 1008 G +H L E L L + E L + + V Sbjct: 1005 LERGRLVHRLLELLP------------DLPAASRMAAAEAFLDQALKPVFA---PFKDTL 1049 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 L +L+ ++ E + + R L+ V + G ID Sbjct: 1050 LKELAQVLEKPEFQPVFSENS-----------RAEVALTGTIRSANGTDVE--VSGQIDR 1096 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY-TLALHRYLRH 1124 + ++DYK+N ++ A + ++ +L Q+Y A+ +L Sbjct: 1097 LIVDGNEVVIVDYKTNLQPPETLDQVPLEYRAQLSVYK-ELLRQIYPAKAVRCHLLW 1152 >UniRef50_C7HA04 ATP-dependent exoDNAse beta subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA04_9FIRM Length = 1233 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 233/1265 (18%), Positives = 397/1265 (31%), Gaps = 239/1265 (18%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + +RL+ P+ + LL+VTFT AA AELR RI Sbjct: 19 GALLVSAAAGSGKTAVLTERAVRLITD------PEHPVDADRLLIVTFTNAAAAELRARI 72 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + A L + A + TI FC + Sbjct: 73 GQALLKRSQAEPGNGA---------------------LRRQRMLLQRAPICTIDAFCLDL 111 Query: 137 LNLNAFESGMLFEQQLIEDESLLRYQA--------------------------------- 163 L + + + + S+ +A Sbjct: 112 LRKHFQALDIPPDFSPADPGSVELLRASALSETLENAYRDPDFCAFADLYGKGRTDRAAG 171 Query: 164 -----CADFWR----------RHCYPLPRE-------IAQVVFETWKGPQALLRDINRYL 201 DF R P E ++ ++ R Sbjct: 172 ETILHVYDFLRALPDYDKKLDEFLAPWQEENGFAATCWHDLLLAEAARSARAAGELFRAA 231 Query: 202 QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSN 261 + P + D + + V +++ DA LD G + Sbjct: 232 LADCPGDREQELADAEEKKTPSAREKAKNAVLEKYTDAQERLDKAAALLGRVEQLAVAGE 291 Query: 262 QAKWIDKISAWA---EEETNSYQLPESLEKFSQRFLEDRTKAGGE--------TPRHPLF 310 D ++ + EE + + L ++ + R G P Sbjct: 292 WTPLYDLLTPYVLGMEELPGLKGMKKRLNGEHKKVIRTRADEGAALFAQILELIPCSEEE 351 Query: 311 EAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-- 368 D+ AEP R + A+ + + +KR R L F D + LR + G Sbjct: 352 AEADRRAAEP---RLRALFAAVRDFDARFSAKKRDRKLLEFSDFEHQALHLLRDQDGPPT 408 Query: 369 VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIF 428 L IR + M+DE+QDT+ Q ++R + + L L+GD KQ+IY FR AD Sbjct: 409 ALCGVIRQNYAAVMVDEYQDTNALQDALYRCLASPAGDD-LFLVGDLKQSIYRFRQADPS 467 Query: 429 TYMKARSEVHAH-------------------YTLDTNWRSAPGMVNSVNKLFSQTDDAFM 469 + + A LD N+RSAP +V +N LF + + Sbjct: 468 IFREKLDSWPALPGGAARPRPAEGTPGTDAMLALDANFRSAPQVVEGINFLFERLMSPEL 527 Query: 470 FREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDW 529 + G Q L GE +++ + ++ T A A +I + Sbjct: 528 GD-------TAYGDGQRLICGAPGEYTGSVEAHFLPDDTA------ETDAGWIARRIEEL 574 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 +Q+G+ + +G RPV+ D +L+ +R + +ALT IP VY R+++ + Sbjct: 575 VQSGEP----VRDGSATRPVQYEDCCILLAARIDFPAYVEALTARGIP-VYADARENLLD 629 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD---------- 639 + ++ LL+ + P ++ L +A+ + G D+ L Sbjct: 630 APHIRPLIALLKVIDNPAQDIYLAAAMLGPLFGFTDDDLVRLRARAEEIQKQQGENAPQR 689 Query: 640 ------------------------VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675 R++ R +L + ++ L Sbjct: 690 ISLYGALLLTVNSGEDTPFTGKVRAFYARLTELRRMARSVPAEQLLEEIFASTGYLAALG 749 Query: 676 ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 G RR D + AG+ ALVR + L + + + S Sbjct: 750 VMENGARRREDARRFASFCAGAGSG--GISALVRAIDAAALAGSTGQDT--VPGGSRPGC 805 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNF----RVQEQAFYHDRHSFEAVLDLNAAPESVDLA- 790 V ++TIH+SKGL++P+V++ ++ H + L + A Sbjct: 806 VTVMTIHRSKGLQFPVVFVADTARRFNAADTRQPVLLHRMYGAGLRLRPEEGEGAYKTAA 865 Query: 791 --------EAERLAEDLRLLYVALTRSVWHCSLGVA-PLVRRRGDKKGDTDVHQSALGRL 841 AE +E +RLLYVALTR+ L V + + ++ G+ Sbjct: 866 YTALSNVHAAEMRSEQMRLLYVALTRAQDKLILTVPLGIGKTSNPFTRAAAFLEAGAGQT 925 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 L + A LR + + + A+ + T + + L Sbjct: 926 LCRQANSFADWLRAALLVHPNGGPLRRLAEDLELPFADTGSTITLTVQ-QALPEGVEPPD 984 Query: 902 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVA-------------------SVVEEPTLTP 942 L Q + + L + +E P Sbjct: 985 PEPEERPLAQADPALTEALRQGFAWQYPAAELARVPAKVSVTGIVHKAEQTTLERPGFLA 1044 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVD-------PNWVREKLELGGFESQWEPVLTEWIT 995 A GT LH+ E DF + + + P + E + Sbjct: 1045 KDGLTAAEMGTALHAFLEHADFAALAAAKQAGTLETAIPAERDRQVEAKLTAPEIAEKLD 1104 Query: 996 AVLQAPLNETGVSLSQLSARNKQVEMEFY--LPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 A E+ +A E++F LP +E L A D+ Sbjct: 1105 AGRIRRFVESEAFARICAADEVLRELDFITALPAAEVLTAQGTDS-----------ADSA 1153 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 Q + +++G DLV LLDYK++ + Y Q L Sbjct: 1154 AVAQAKVLVQGIADLVLVFPNHLELLDYKTDRRKSEDDFLAA-----------YRAQLDL 1202 Query: 1114 YTLAL 1118 Y LA+ Sbjct: 1203 YALAI 1207 >UniRef50_A2ST33 UvrD/REP helicase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2ST33_METLZ Length = 1057 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 216/1161 (18%), Positives = 389/1161 (33%), Gaps = 213/1161 (18%) Query: 21 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 + A AGTGKTF + Y+ L + ++L +T+T+ A AE+R +I + Sbjct: 21 VTAGAGTGKTFLLTKRYIAALTYRRETMHT----GASDILALTYTDKAAAEMRTKIGREL 76 Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 + ++P E + E ++ T HGFC +L Sbjct: 77 KKAA-------EEDPELEGVWE-----------------SFSRCSISTFHGFCLSLLKEF 112 Query: 141 AFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKG-PQALLRDINR 199 A+E+G+ ++++ ++ R P + V + +A + + Sbjct: 113 AYEAGLDAGFSVMDELDT--HELVTGTIREMLEHPPATLFGDVVTLFDHLREATIAGYLQ 170 Query: 200 YLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNR 259 L ++ ++ A D +RD + D L+ + + R Sbjct: 171 SLMRIEGAKDWFSLLEKNPSAVIAVWQKAWDEEITAYRDDLAG-DELVNALMAELRALAP 229 Query: 260 SNQAKWIDK----ISAW--AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAI 313 + + +A+ A Y + L + + GG E Sbjct: 230 ERKGELFQAGPAAFAAFCDANGPAEMYAAGKLLAGINTNAYKAPLPKGGLERFKEKREVF 289 Query: 314 DQLLAEPLSI---------RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 + P + R + + E REK++RG L FDD++ + + + Sbjct: 290 KEFPTHPDESDPRTRLTFEILAALGRVASAVSERTVREKQQRGVLDFDDLIQKTRDLIEN 349 Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-LLLIGDPKQAIYAFR 423 + + + R+ ++DE QD DP I R + E L ++GD KQ+IY FR Sbjct: 350 D---AVQKTLNARYRYILVDEVQDNDPVLTDIIRILCGDPKENNRLFIVGDAKQSIYLFR 406 Query: 424 GADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG 482 GAD+ + ++ LDT++R+ P ++ VN +FS +F + I G Sbjct: 407 GADVSGFNAFQTVFANDPVELDTSFRTVPEIIRLVNHVFSS-----VFADPKEIWEAGYG 461 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 + R G + + L GE+ + A+ A+ I D + ++ ++ Sbjct: 462 ELTPHR---AGHSGSVTLIRLPTGET--KAESMRREARTLASWIFDTVS--RKKLSVYDK 514 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 RP R DI+VL+ +R ++R AL +P S ++ E + LL+A Sbjct: 515 DGTCRPARFGDIAVLIEARTHMDKLRHALESYGVPYTE-EKGYSFYQKQEVFDFTNLLKA 573 Query: 603 VMTPERENTLRSALATSMMGLNALDI-----------------ETLNNDEHAWDVVVEEF 645 ++ PE + L L + G++ ++ N + V + Sbjct: 574 IVYPEEDIPLYGVLKSPYFGISDAELCRAAAGSGRPLIWRLRNYATANPDSKIGKAVGDL 633 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH 705 + +P L L++ IA G ++ + + + + Sbjct: 634 ARWHAEIGTEPFVPFLSRLIAESGIAAVYGGLPFGREATANLEKLVAIAR--SRSMNRPF 691 Query: 706 ALVRWL--SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 ++ +L +E + + + E D V+I+T+H SKGLEYP++ L F Sbjct: 692 SVYEYLGILDTCMEEEFDEREGMVPSEED-DRVKILTVHASKGLEYPILALCFAGTGDGL 750 Query: 764 EQAFYHDRHSFEAVLDLNAAPESVDL----------AEAERLAEDLRLLYVALTRSVWHC 813 + + + + A E L +A+ LAE RL YVA+TR+ H Sbjct: 751 KVSAPVFDAELGVGIPVRLAGEGEGLSFVIECLKPEMKAKLLAERKRLFYVAMTRARDHL 810 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 873 + G K +T+ S L I + + Sbjct: 811 VIS-----GTDGKKGPETNSFLSMY-----DAGISGCPYLPELITDCVAEPGDLCRIRPK 860 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS 933 W + T E A S + + S Sbjct: 861 VPDGWTDTPLPTKEEEAAQ------------SLTAAVRN-----------------RTPS 891 Query: 934 VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW 993 EE + GT LH +FE +P D ++ G Sbjct: 892 AAEEAAMLR---------GTALHEVFE----GKPAD-----AAVKRYGLPPAAAEEFAAK 933 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 A L +PL + + + E+ F G P Sbjct: 934 YAAFLASPL------MQNAAKSICEQEVAFSF----------------------EGTP-- 963 Query: 1054 EFMQVRGMLKGFID-LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 L G ID LV +G + ++DYK+ + M+ RY+ Q Sbjct: 964 --------LNGVIDRLVQYEDGSWMIIDYKTGR-------------PSKMELERYESQLA 1002 Query: 1113 LYTLALHRYL-RHRIADYDYE 1132 +Y +L R+ D E Sbjct: 1003 VY------FLWAKRLFGKDPE 1017 >UniRef50_B2A860 UvrD/REP helicase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A860_NATTJ Length = 1161 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 203/1185 (17%), Positives = 391/1185 (32%), Gaps = 133/1185 (11%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 L L+EA AG+GKT ++ + ++ V+E++ +TFT A AELR Sbjct: 21 LDQNILVEAGAGSGKTRSLVDRMVAQVVSG--------RYRVDEIVAITFTRKAAAELRE 72 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 R ++ + E + D + + +A R ++ + TIH F Sbjct: 73 RFQNRLEEEY------------------QKDYSPEVKDNIEIALRNIEGTFLGTIHSFAA 114 Query: 135 RMLNLNAFESGMLFEQ-QLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 +L E+G+ E +L E ES + + + + + ++ + + PQ L Sbjct: 115 NLLRERPVEAGLDPEFQELDELESAIMEEEVFEEYLLYVRLNREDLLINLDKIGVSPQNL 174 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE--LDALIESSG 251 D L ++ ID K D D L ++ Sbjct: 175 KASFKELAHYPDVEFFHKEVDRPDLELALQELKELIDKAKANLPDKEPPKGYDGLQRATL 234 Query: 252 IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFE 311 +R + + + + ++ E L EK L D E P+ E Sbjct: 235 KAKRYLSYFDMNRDERIVELLSQFEKPKITLNRWPEKDIAYELRDEANRLAEEIIQPIME 294 Query: 312 AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLA 371 + I R L E ++ + F+D+L R + LR + Sbjct: 295 EWRRYC-------HYHIMRFLIPAVEFYEHKREELSYMNFNDLLLRARNMLRDYP--EVR 345 Query: 372 AAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ-----------PETALLLIGDPKQAIY 420 + ++ ++DEFQDTDP Q + + + +L ++GDPKQ+IY Sbjct: 346 QYFQRKYRTILVDEFQDTDPIQSELLFYLTGEEVQEKTWYNLSPRPGSLFVVGDPKQSIY 405 Query: 421 AFRGADIFTYMKARS----EVHAHYTLDTNWRSAPGMVNSVNKLFSQT----DDAFMFRE 472 FR ADI TY + L N+RS + +N +F + D + + Sbjct: 406 RFRRADIDTYNLVKDLIVDRGGEILELTANFRSVNSLGEWLNPVFQELLPEESDKYQAKH 465 Query: 473 IPFIPVKSAGKNQALRFVFKGETQPAM--KMWLMEGESCGVGDYQSTMAQVCAAQIRDWL 530 P +K + + G + + + + A+ A IR L Sbjct: 466 APLETIKRDEEVIGEQSDLAGLLSKRLGVRKLSVPQGLSKKEEVMEADARQIAQSIRRLL 525 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 + +ASD +++R ++ + AL IP V ++ S+ + Sbjct: 526 NSSGG-------------YQASDFMIILRYKEGMDKYARALENEGIP-VAMTGGSSMGDC 571 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV---------- 640 E QE+ LL + P+ + L + L GL+ + + ++++ Sbjct: 572 FELQELYKLLLCLKEPDNQVYLIAVLRGLFFGLDDDTLYQFKENGGSFNIYSSLPETDNK 631 Query: 641 -------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA-TAGGERRLTDILHISE 692 ++ Y K L L+S + E R + + E Sbjct: 632 STQKVAQALDRLKKYLSWKNKYSPSICLEKLVSELGLFPYTFTCGEMEESRSGYLYQLLE 691 Query: 693 LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 ++++ T++E E V + + N + ++ VQ++ +HK+KGL+ P+V Sbjct: 692 IVKQ--TEIEGETDFVSMVEKIEDVLTINPEEELDIFSQKQNAVQLMNLHKAKGLQAPVV 749 Query: 753 WLPFITNFRVQEQAFYHDRHSFEAVLDLN---------------AAPESVDLAEAERL-- 795 +L E+ P + E L Sbjct: 750 FLANPVKKVNPEKFVTKHIKRTAGTTPTGYFTFSEVRNFRRKEIGIPSDWEKYREEELKY 809 Query: 796 --AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 +E+ RLLYVA TR+ + + + R + + S L + E D Sbjct: 810 LESEENRLLYVAATRAEELLVISDSEESKVRKYNPWCSLLDNSPEEVLELELEVNDNDQQ 869 Query: 854 RTCIEALCDDD--IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ 911 + + + + + Q L P + S S + Sbjct: 870 FDGVLLGDNQEQVNGEELTEQLQKIREQKYKWIEPHEKPSYLLHTPSSLEKTASES--KT 927 Query: 912 RGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD---FTQPV 968 Q + + + +P + +GA G +H FE L + + Sbjct: 928 SSSDFFQISIESIIQSREDELTEEIDPEKSDRGELKGAVLGNIVHRAFELLIKDCYQDKI 987 Query: 969 DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPIS 1028 + ++ + + E ++ E I + L + + E+ F+L Sbjct: 988 TITGLLQEYREEDPDGKKEALIQELIYKFKASQLWDKISR-----SDQVLTEVPFHLKTE 1042 Query: 1029 EPLIASQL--DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-----EGRYYLLDY 1081 + + + + V + G IDLVF+ + + ++DY Sbjct: 1043 PQESLHEFISNNIKDSIKIKDSIKENENLDHVSIVFSGTIDLVFKDPDSVRDSEWVIVDY 1102 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 K++ + + A+ ++Y Q Y + R + Sbjct: 1103 KTDLIEASNEQQKNHAIDQ--LKNQYSPQLSAYQQVFEKLTRETV 1145 >UniRef50_A7IJM3 UvrD/REP helicase n=12 Tax=Alphaproteobacteria RepID=A7IJM3_XANP2 Length = 1131 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 235/1161 (20%), Positives = 397/1161 (34%), Gaps = 158/1161 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+EA AG+GKT +A +L ++ + VTFTE A +EL R+R Sbjct: 25 SILVEAGAGSGKTAVMAGRIAAMLAE---------GVSPRAIAAVTFTELAASELLSRVR 75 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + +L + L L + D L A +DE TIHGFCQR++ Sbjct: 76 EFVADLSDGKIATELRVALPHGLSQAHRDN------LAAASTAIDEITCSTIHGFCQRLI 129 Query: 138 NLNAFESGMLFEQQLIE-DESLLRYQACADFWRRHCYP--LPREIAQVVFETWKGPQALL 194 E+ + +++ +++ L + D W R +A++V + AL+ Sbjct: 130 KPYPAEADIDPGAGVMDRNQADLTFLEIVDGWLRERLSGGQGGILAEMVLHSPGETVALV 189 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE----LDALIESS 250 I L+ + P + + Q A E ++ L+E + Sbjct: 190 HKIAENLRRRRTLAAPPISPLDGRLTAFRQAAADFAGFMHGTGTTEPETVVIVERLVEMA 249 Query: 251 GIDRRKFNRSNQAKWIDKISA------------WAEEETNSYQLPESLEKFSQRFLEDRT 298 + + A + +++ +A + + + DR Sbjct: 250 TALANGSDPATPAGLVQLLTSRPHPDLCTKAGTFASYRKKGKWAAAAKQAGLSKADGDRL 309 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRL 358 + +A LL S + + + KR +L FDD++ Sbjct: 310 NDDADAHYTACCDAWISLLQAAASQALAALIEEARPVLQRYRDHKRASAQLDFDDLIFAA 369 Query: 359 DSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA---------- 408 LR + + A+ RF ++DEFQDTDP Q IF R+ E Sbjct: 370 RDMLRDH--DEVRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCGEPVEGNDDWTRFRIRP 427 Query: 409 --LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-----YTLDTNWRSAPGMVNSVNKLF 461 L L+GDPKQAIY FRGAD+ Y++AR ++ TN+RS ++ VN+ F Sbjct: 428 GALFLVGDPKQAIYRFRGADVGAYVQARDAFRVQDPDSLLSISTNFRSCASILTFVNERF 487 Query: 462 SQTDDAFMFREI----PFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 A PF + AL E A + E+ Sbjct: 488 EAVLSADGQPGFTALDPFHSDRGGLCVAALDIAVADENGKASAEQQRDAEA-------DA 540 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577 +A++CA I + + RP + DI++L + E + +AL IP Sbjct: 541 IAELCARLI-------ESHPIIDRRSGAERPCQPGDIALLAPTGAELWRYEEALERRGIP 593 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL-----N 632 V +F E Q+++ L + + L + L ++GL D+ + Sbjct: 594 -VATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEDLLDIVWGLPR 652 Query: 633 NDE-------------------HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 + E V+E + +L + + Sbjct: 653 SKEQPDRIPRLDLSIDPAVITHSLARAVIERLQSLSRRGNSTTPHELLSQAVDVMRVRPL 712 Query: 674 LLATAGG--ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 LL G ER L +I L G + A + A + + R ++ Sbjct: 713 LLERHRGQAERALANIDLYLSL--STGYAVRGLRAFAEAM---TAAWSDEARAVEGRPDA 767 Query: 732 DKHLVQIVTIHKSKGLEYPLVW-LPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVD-- 788 + V + T+H +KGLE+P+V + +T E A + L APE + Sbjct: 768 QEEAVALFTMHAAKGLEWPIVIPVNTMTGVMAPESAVIDRQTETFYCSVLGVAPEGYETA 827 Query: 789 -LAEAERL-AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 AE E L E +RL YVA TR+ L P + K + +L L Sbjct: 828 RQAEKEELDRERIRLWYVAATRARELLVL---PRLDTTPSKSAWIGLVDLSLADLPG--- 881 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 DA+ L + A QT T + + T W S Sbjct: 882 -LDASHLPAGLTAAGAGTDNTQTRATFAAEAETITAAQT------------RLTWLAPS- 927 Query: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASP-GTFLHSLFEDLDFT 965 R A ++ + + + P L +G G LH L E++ Sbjct: 928 -----RDENAAGIVLREEEAAIWTGLADDQPPELEAAALVQGGRERGLILHKLMEEVLTG 982 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 + + E+ + I A+ ++P++ LS V+ Sbjct: 983 ETSEA------------EAALTDRAADLIHALGRSPVSAPATGLSAEELAACVVQ----- 1025 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR-YYLLDYKSN 1084 ++ P IA L+ +F +A G+ L +GR ++D+KS+ Sbjct: 1026 TLALPDIAILRPDLLAEFPVYAAQASDGVETATAGITDA---LTIGEDGRPVVVVDWKSD 1082 Query: 1085 WLGEDSSAYTQQAMAAAMQAH 1105 + A T A ++A+ Sbjct: 1083 ---VNPEAQTLDHYRAQVRAY 1100 >UniRef50_Q38X69 ATP-dependent helicase/nuclease subunit A n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=ADDA_LACSS Length = 890 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 170/886 (19%), Positives = 319/886 (36%), Gaps = 146/886 (16%) Query: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 L+ ASAG+GKT + A ++ +L + V+ LLVVTFTEAA E+R RI++ Sbjct: 25 LVSASAGSGKTSVLVARVIQKIL---------KGTDVDTLLVVTFTEAAATEMRQRIQAA 75 Query: 80 IHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 + + E + Q L + A + T+H FC +++ Sbjct: 76 LRDAS------------------EKATEPAVKQRLRQQLSLVPTAQISTLHAFCLKVIKQ 117 Query: 140 NAFESGMLFEQQLIEDESLLRYQACADFWRRH------------------CYPLPRE--- 178 + +L+ D + A W+R Y L + Sbjct: 118 FYYVIDRDPVFRLLSDTAERLLLADQ-VWQRVREAFYNHEYVKENEQDTLFYELAQNFSN 176 Query: 179 ------IAQVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIV 226 + +VFE P L + + + + A E + Q + Sbjct: 177 DRNDDGLTDIVFELLDFANANSNPVKWLNKLPKSYAVDEAGLTASDYFQEKILPILQQTI 236 Query: 227 ARIDTVKQQWRD-------------AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWA 273 Q+ + A + D + N + + Sbjct: 237 TECLEALQEAEQLSKTSENLMIYAPQIATTQAALTQINADAKTLNWQAWRQQLTDAQLGP 296 Query: 274 EEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA 333 + T + E + K + D K +T F D+ + + + + L Sbjct: 297 AKRTKKLEPDEQINKDRLKADLDDVKKKIQTLLDTYF-VFDEATTANIQRQAGQLVQKLV 355 Query: 334 EI----RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 + RE EK RR L F D+ + L E A + +F ++DE+QDT Sbjct: 356 SVTLTFREAFQAEKERRHLLDFSDLEQLCLTILSVEDSPA-RAFYQQKFSEVLVDEYQDT 414 Query: 390 DPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH--------AHY 441 +P Q I +++ P L ++GD KQ+IYAFR AD + +E Sbjct: 415 NPLQETIIQKVTSDHP-RNLFMVGDVKQSIYAFRLADPSLFKNKYNEFGVTEAERDSERI 473 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKM 501 L N+RS + + N +F Q D + E+ + ++A R+ ++ Sbjct: 474 ILAENFRSRRNIDDFTNLIFKQLMDENLG-ELDYD--ENAALQYGARYYPDQHPTAPTEL 530 Query: 502 WLME---GESCGVGDYQSTMAQVCA--AQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 L E E+ + QV A +I+ + G+ + + RP+ DI + Sbjct: 531 LLYETKPEEAVANPQLDKSEGQVVAVAKRIQAMMTNGE--QIWDKKLEKMRPIEYRDIVL 588 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L +R + D +P V + + + F+T E Q ML LLQ + P ++ L S L Sbjct: 589 LAPTRGNNLFILDYFKRFGLP-VVIKDAQNYFQTTEVQIMLALLQVIDNPNQDIPLVSVL 647 Query: 617 ATSMMGLNALDIETLNNDEHAWDVVVEEFD-----------------------------G 647 + ++GLN ++ + ++ D F+ Sbjct: 648 RSPIVGLNENELALIRINDKTDDYYQAVFNFIDQYNEQKVGHLGQQVMQKLTHFMALLTS 707 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHA 706 +R I R++ ++ ++ + + + G +R ++ + E + Sbjct: 708 FRTIARQQPIVDLIWTIYQETGFLDYVGGMPAGRQRQANLHALYERATAYEENGFKGLFQ 767 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ--- 763 ++++ + L+ +Q LE ++ + ++TIH SKGLE+P+V+L + Q Sbjct: 768 FIQFIER--LQKQDKDLAQPTSLE-NQDAISVMTIHGSKGLEFPVVFLIDTSRRFNQQDL 824 Query: 764 EQAFYHDRHSFEAVLDLNAAPESV----------DLAEAERLAEDL 799 ++++ D H V+ L++ + AE++ Sbjct: 825 QRSYVLDNHGGLGVVYLDSQKRLKVPTLPELAITAQKRKKLRAEEM 870 >UniRef50_B2GEY4 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus fermentum RepID=ADDA_LACF3 Length = 1337 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 238/1350 (17%), Positives = 450/1350 (33%), Gaps = 304/1350 (22%) Query: 20 LIEASAGTGKTFTIAALYLRLL-LGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ ASAG+GKT + ++L+ GL A ++++L+VTFT A +R RIR Sbjct: 21 LVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILMVTFTTDAAKNMRDRIRR 80 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + D+ AQ LA A + TIH FC++++ Sbjct: 81 RLVGA---------------------TDEHMKAQVARLAL-----ANISTIHSFCEQLIK 114 Query: 139 LNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPR--EIAQVVFETWKGPQALL 194 + + + +LI+D + LL+ QA + + Q++ G + Sbjct: 115 RYYYVIDLDPQFRLIDDAEQQLLKEQAWQATLDDWVANPDQVGALHQLIDNFGAGNLESV 174 Query: 195 --------------RDINRYLQGEAPVIKAPPPDDETLASRHAQ--IVARIDTVKQQWRD 238 D L G + P R + + ++ ++ QW Sbjct: 175 VQALDTEADAQPHPSDWLAGLSGLYQFEEGADPRQSAFFKRLLEPLVGPQLKELRDQWAA 234 Query: 239 AVGELDALIESS---GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 A + + +Q + + A+ P+ ++ E Sbjct: 235 LGEVGPARFAEQVEEDLAKLATTVDDQGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPE 294 Query: 296 DRTKAG----------GETPRHPLFEAIDQLLA--EPLSIRDLVITRALAEIRETVAREK 343 + G G+ F++ L+ + ++TR + R K Sbjct: 295 LLDELGVQRGGLRDQLGDLHDTYFFQSAADLVKYGQKAGALIEILTRVATDFRCHYQIIK 354 Query: 344 RRRGELGFDDMLSRLDSALRSES------------------GEVLAAAIRTRFPVAMIDE 385 + R L F D+ + L E+ + A ++ + MIDE Sbjct: 355 QDRRLLDFSDLEHYAYAILTGENINPKVTWSDEEARAKRQAAAQVQAELQRHYKEIMIDE 414 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------ 439 +QDT+ R+ H + ++GD KQ+IY FR AD + + A Sbjct: 415 YQDTNRL-QDDLLRLLHKSGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSADGQSSE 473 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA- 498 L N+RS + + VN +F Q D + K++ K +A + + PA Sbjct: 474 ALDLSDNYRSRHEVTDLVNLIFEQLMDQQLGE--MVYDDKASLKPKADWGADRDQASPAT 531 Query: 499 MKMWLMEG------------ESCGVGDYQSTMAQ---VCAAQIRDWLQAGQRGEALLMNG 543 ++ L +G ++ V + +A + +IR+ L + L Sbjct: 532 PELLLFDGGVKKTTANPTGEDAIVVRQPEDKVASEVWLIGQRIRELLA---KETILDPET 588 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RP+ DI++L R+++ + + + L +P V + ++ F+ E + ++ LL+ + Sbjct: 589 KRVRPITPGDIAILSRAKRIHSVIAEQFAKLNLP-VMVHGVENYFKATEIRVVMSLLKVI 647 Query: 604 MTPERENTLRSALATSM-------------------MGLNALDIETL------------- 631 P ++ L + L + + +G ++ L Sbjct: 648 DNPYQDVPLAAVLRSPLIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVV 707 Query: 632 ----------------NNDEHAWDVVVEEFDG------------------YRQIWRKRGV 657 N+D + + E G Y ++ R + Sbjct: 708 QQNYYAWRDQEVEAVENHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFEL 767 Query: 658 MPMLRAL-------------MSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLES 703 LR + A + + +GG +R ++ + E + + Sbjct: 768 RDHLRRVAQRRPLVDLIWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKG 827 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 + + ++ Q + + + + L D + ++TIHKSKGL++P+V+L T+ Sbjct: 828 LYQFIHFIEQ-MQKKNDDLGEATTALAGD--AINVMTIHKSKGLQFPIVFLVETTHQFQA 884 Query: 764 EQAFYHDR---------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTR 808 ++ + L + + + AE++RLLYVALTR Sbjct: 885 DRDPVTIEPQAGLGFTYVDSTANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTR 944 Query: 809 SVWHCSLG---------------------VAPLVRRRGDKKGDT-------DVHQSALGR 840 + + +PL+ KG + + ++A Sbjct: 945 AEQRLFITGYVKDADLTKKMDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFP 1004 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIA-WQTAQTGDNQPWQVNDVSTAE---LNAKTLQRL 896 L++G A LR +A + Q N P ++ +TAE A T ++ Sbjct: 1005 TLREGVEAAATPLRGLTKAAYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQF 1064 Query: 897 PGDNWRVTSYSG--------LQQRGHGIAQDLMPRLD---------------VDAAGVAS 933 D RV +++ + ++ R D + AG Sbjct: 1065 KADLERVLNFTYPDQVATQTTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYL 1124 Query: 934 VVEEPTLTPHQF--------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQ 985 EE F P G + GT H +F+ L T+P+D VR ++ Sbjct: 1125 APEERAFENPAFITGASDQEPTGTAIGTATHLVFQKLPLTEPLDEGAVRALIKSLTESGL 1184 Query: 986 WE-PVLTEWITAVLQAPLNETGV-SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 + P + I +TG+ + E+ F + L+ Sbjct: 1185 IDNPQVAAGIDVAGVVSFYQTGLGQVITAHPEQVHREVPFSM-------------LLSAH 1231 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 D S ++ G ID +H+ + L DYK++ + + Q +A Sbjct: 1232 DLFSGIG---ATDDSEVLIHGIIDGYVQHDDQIDLFDYKTDRISQAHPEEDLQELAD--- 1285 Query: 1104 AHRYDLQYQLYTLAL-----------HRYL 1122 +Y Q LY AL HR+L Sbjct: 1286 --KYSGQLVLYADALTKMTGVPLEKIHRHL 1313 >UniRef50_C0GCZ7 UvrD/REP helicase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCZ7_9FIRM Length = 1069 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 238/1183 (20%), Positives = 417/1183 (35%), Gaps = 222/1183 (18%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + ++ L L+EA AG+GKT ++ L+ +E + VTFT Sbjct: 10 QARQAIKTRLTETFLVEAGAGSGKTTSLVQRMTALI--------STGQCQMENMAAVTFT 61 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 A ELR R + + + ++T +P ++ LE A Q+D A Sbjct: 62 RKAAGELRERFQEKLEKEY-----QSTTDPTTKQTLET-------------ALSQLDRAF 103 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVV 183 + TIH FC R+L E+GM + IE +E +L A ++ + P ++ + + Sbjct: 104 IGTIHSFCSRLLRERPVEAGMSPDFTEIEGLEEKILAQTAWEEYLLEVRFTQP-QLLKQI 162 Query: 184 FETWKGPQAL---LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ----- 235 + PQ L + Y E A PD ++ +T Sbjct: 163 RQIDVSPQDLKEAYHQLTLYPDVELATTSASYPDFAPARKSLNDLLLLAETALPLNPPDG 222 Query: 236 -WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 W +L L+ + RR F+ S+ I +S +++ + + E Sbjct: 223 GW----DQLQRLLRQALRWRRFFDLSDDRNLIRLLSKLNKKKKVVQKKWLTKET------ 272 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDM 354 K H I L + R + L ++R ++ F D+ Sbjct: 273 ---AKQIQAFFDHFRESDIQPTLRQWWEYRYPHLLEFLLPAVAHFQTVRQRENQVNFQDL 329 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-----------H 403 L R + L++ S + + R+ ++DEFQDTDP Q I + Sbjct: 330 LMRTAALLKNNS--EVRGYFQNRYTHLLVDEFQDTDPIQAEIMMFLTGCDLTETDWTKIS 387 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----YTLDTNWRSAPGMVNSVNK 459 AL ++GDPKQ+IY FR ADI TY + + + L N+RS +++ VN Sbjct: 388 PKPGALFVVGDPKQSIYRFRRADIDTYNRVKDLIKKANGEVLHLTANFRSLTEIIDWVNP 447 Query: 460 LF----SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG-DY 514 +F +Q+ + +P PV+ + P + + E G+ Sbjct: 448 VFDDLLTQSVAPYQADAVPMQPVR--------------KNHPDNTGGIFKIEIPGITYHK 493 Query: 515 QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR------ASDISVLVRSRQEAAQVR 568 Q T+ AA+I W++ G L + +D +LVR + + Sbjct: 494 QETIVSEDAARIAAWIRTCLDGNVTLTRTAEEEQAGLSATPSPNDFLILVRYKDYMSLYA 553 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL IP LS + + E QE+ LLQA+ P+ L + L G++ D+ Sbjct: 554 RALEEYNIPF-SLSGASDIAASRELQELHLLLQALADPDNPVPLVATLRGLFFGVSDEDL 612 Query: 629 ETLNNDEHAWDVVV---------------EEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 L + ++ E+ YR R+ + ++S + Sbjct: 613 YRLKKANGRFCLLSPIPDDPTVESFIPIWEKLQQYRAWTRELPPSSAIENIISDLGLIPY 672 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEH-ALVRWLSQHILEPDSNASSQQMRLESD 732 LA + G+ R IL + EL++ ++ A V ++S+ + +++ +E+ Sbjct: 673 ALAGSMGKGRTGYILQLLELIRSREQNGQTTFPATVDFISELLEA----GMEEELDVEAG 728 Query: 733 -KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEA------------VLD 779 V+I+ +HK+KGLE P+V+L +E + R S + Sbjct: 729 IAPAVRIMNLHKAKGLEAPVVFLANPGKTVTREPNLHVSRTSGTPKGYLQISKRENYASE 788 Query: 780 LNAAPESVDLAEAERL----AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 + A P + ++ +AE AE+ RLLYVA TR+ + P Sbjct: 789 IFAQPTNWEVHQAEETLYQQAEEARLLYVAATRAKNILIISTYP---------------- 832 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 K + L +E++ DI + Q+ + +N + Sbjct: 833 -------AKADKSPWHPLEEFMESIPTLDIPQVQLPAKEEPQTQITPETLQAVNQQ---- 881 Query: 896 LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFL 955 +Q+ + R V + E T RG S G + Sbjct: 882 -------------IQENIARVITPTYTRCTVTDLTKDAQAPERRHTG----RGMSWGNVI 924 Query: 956 HSLFEDL-DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSA 1014 H+ E L + + + L+ G + + + + + P + S A Sbjct: 925 HNALEALVKYENIDLEALIPQLLQQEGRAEDEKEEVLTLLQEITETPFWQRVQS-----A 979 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 K E+ F + + L G IDL FR Sbjct: 980 SEKHTEIPFGI------------------------------YENDHYLTGTIDLAFREAE 1009 Query: 1075 RYYLLDYKSNWLGED------SSAYTQQAMA-----AAMQAHR 1106 + L+DYK++ + +D + YT Q M R Sbjct: 1010 GWVLVDYKTDTVRDDVHRQELVNYYTPQLKEYAKRWEEMTGER 1052 >UniRef50_C5RQN8 Recombination helicase AddA n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQN8_CLOCL Length = 1287 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 167/935 (17%), Positives = 338/935 (36%), Gaps = 151/935 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+ + +++LLVVTFT+AA AE+R RI Sbjct: 23 NLLVAAAAGSGKTAVLVERIIELV------SNKEAKTDIDKLLVVTFTKAAAAEMRERI- 75 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 N L E++ E DD Q +L +++A + T+H FCQ ++ Sbjct: 76 ---------------GNALAEKISENPDDTHLHRQLVL-----LNKANITTMHSFCQSLI 115 Query: 138 NLNAFESGMLFEQQLIEDESL---------------LRYQACADFWRRHCY-----PLPR 177 + + ++ + + + + ++R + Sbjct: 116 KNYFHKLDIDPAFRIGDATEIELLLLETIEEVLEECYKEENITIGFQRLVEGYGKNEDDK 175 Query: 178 EIAQVVFETWKG------PQALLRDI-NRYLQGEAPVIKAPPPDDETLASR-----HAQI 225 + V+ ++ P++ L + Y E ++ + + ++ Sbjct: 176 SVQDVIIRLYRFVMAMPWPESYLEKVVEAYRAFEETSPFKTSFENSEFSKEICKIVYDKV 235 Query: 226 VARIDTVKQQWRDAVGE------LDALIESSGIDRRKFNRSNQ---AKWIDKISAWAEEE 276 + T++ R+ + L LI+ S + A +S Sbjct: 236 EPDLKTLRILIREVEAQESINPNLPLLIKEEAYLSNIVKNSKEGYEALRNILMSVEFGRL 295 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEP--LSIRDLVITRALA 333 + K + + D+ K + F + I+ + E ++ ++ L Sbjct: 296 STKKTSILIETKEQMKNVRDQYKETISSIIEDFFYDDIEAINEEFRFIAPIISILKEILI 355 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGE------VLAAAIRTRFPVAMIDEFQ 387 + T +KR +G + F+DM + L +++ + +A IR +F MIDE+Q Sbjct: 356 SVIHTFKEKKRSKGIIDFNDMEHYVLELLCTKNDKDETVPTEVALEIRRKFEEIMIDEYQ 415 Query: 388 DTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------A 439 D+ Q I I + ++GD KQ+IY FR A +++ Sbjct: 416 DSSFIQEEIMTTISRKDEAVPNMFMVGDVKQSIYKFRQAKPELFLEKYETYEELDGARNR 475 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----------EIPFIPVKSAGKNQALR 488 L N+RS +++ N +F + ++ + A Sbjct: 476 KILLYKNFRSRKEILDGTNFIFKSIMSKELGELEYTDKEALNLGADYVTFEDESLTFAEP 535 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQST-----MAQVCAAQIRDWL-QAGQRGEALLMN 542 +P+ + + + D + A++ A+I+ + + + + Sbjct: 536 IDVIIFEKPSGNIEIQKDTDEDAEDLEEINEFQMEAKIIGAEIKKIMGREAGYRRKKVFD 595 Query: 543 GDDARPVRASDISVLVRSRQEAAQVR-DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 R V DI +L+RS V + L LEIP VY + F+ +E + +L LLQ Sbjct: 596 KGSYRDVEYKDIVILLRSTVNRTDVFLEELKNLEIP-VYADSTSGFFDNIEVKTILALLQ 654 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETL------------------------NNDEHA 637 + P+++ L + L + + G + ++ + N+ Sbjct: 655 VIDNPKQDIPLLAVLRSPIGGFSDDELIDIKISMDKEYCYFFDKLSNYCVVGSDNDLREK 714 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QE 696 + + YR ++ ++ L + + G +R ++ + Q Sbjct: 715 TKAFLRRLNDYRSKSLHLSLVELIWFLFTDTGYLAFVGTLPNGMQRQGNLRILFHRAKQY 774 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP- 755 T + ++ + ++ S+ L + ++V+I+TIHKSKGLE+P+V+L Sbjct: 775 EATSYRGLFNFINFMEK--MKNTSSDLGDAKLLGENDNVVRIMTIHKSKGLEFPVVFLAS 832 Query: 756 ----FITNFRVQEQAFYHDRHSFEAVLDLNAAPES--------VDLAEAERLAEDLRLLY 803 F E F+H+ D + + E +E++R+LY Sbjct: 833 TSKRFNNRELNNEFLFHHNFGIGIKYTDFEKRISYSSILRNLIQEKMKIENYSEEMRVLY 892 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL 838 VALTR+ + G K+ + + + AL Sbjct: 893 VALTRAKEKLIIT-------GGVKEIEKSIRKWAL 920 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 32/199 (16%) Query: 949 ASPGTFLHSLFEDLDFTQPVDPNWVREKLE---LGGFESQWEPVLTEWITAVLQAPLNET 1005 A GT +H + + LD + + + E++ F ++ E + + I +L+ + Sbjct: 1116 AERGTIVHLVMQHLDLNRALTMESINEQISEMIKREFINEKEAKVVD-IRKILRFFSSTI 1174 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 G+ + L A E F + + I + +++G Sbjct: 1175 GLRM--LRADKIYREYPFKIRVKSNEILK---------------LSKSDDENEDIIVQGV 1217 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 ID +F ++DYK + Y + + +Y Q Y +A + L R Sbjct: 1218 IDTIFVENDEIVIIDYK--------NDYVNDNIVDTI-KTQYKTQLNYYKIAAEKILNKR 1268 Query: 1126 IAD-YDYEHHFGGVI-YLF 1142 + + Y Y + G V+ Y F Sbjct: 1269 VKNIYLYLFYSGEVLEYDF 1287 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08394 Exodeoxyribonuclease V beta chain n=100 Tax=Ente... 1323 0.0 UniRef50_A4TLB8 DNA helicase/exodeoxyribonuclease V, beta subuni... 1171 0.0 UniRef50_C5BH93 Exodeoxyribonuclease V, beta subunit, putative n... 1118 0.0 UniRef50_A7K3N4 Exodeoxyribonuclease V, beta subunit n=67 Tax=Ga... 1096 0.0 UniRef50_C4L7B3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Tol... 1036 0.0 UniRef50_Q2BKD8 ATP-dependent exoDNAse beta subunit n=1 Tax=Nept... 1017 0.0 UniRef50_A1SUW1 DNA helicase/exodeoxyribonuclease V, beta subuni... 1012 0.0 UniRef50_Q493D5 Exonuclease V n=1 Tax=Candidatus Blochmannia pen... 994 0.0 UniRef50_A8FUM4 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gam... 981 0.0 UniRef50_D2BZV4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Dic... 976 0.0 UniRef50_C0QI07 RecB n=1 Tax=Desulfobacterium autotrophicum HRM2... 972 0.0 UniRef50_Q1LST8 Exodeoxyribonuclease V, beta subunit n=2 Tax=Gam... 970 0.0 UniRef50_B0TRK3 Exodeoxyribonuclease V, beta subunit n=4 Tax=She... 949 0.0 UniRef50_Q080D8 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gam... 946 0.0 UniRef50_A4CBT2 Exonuclease V, beta chain with recC and recD: 5'... 945 0.0 UniRef50_A6W0A9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Mar... 939 0.0 UniRef50_A4XTT1 DNA helicase/exodeoxyribonuclease V, beta subuni... 936 0.0 UniRef50_C0N789 Exodeoxyribonuclease V, beta subunit n=1 Tax=Met... 936 0.0 UniRef50_Q0HJB9 Exodeoxyribonuclease V, beta subunit n=11 Tax=Sh... 930 0.0 UniRef50_P45157 Exodeoxyribonuclease V beta chain n=17 Tax=Haemo... 927 0.0 UniRef50_A1WWI3 DNA helicase/exodeoxyribonuclease V, beta subuni... 925 0.0 UniRef50_Q0AGC8 DNA helicase/exodeoxyribonuclease V, beta subuni... 924 0.0 UniRef50_B4X4Z1 Exodeoxyribonuclease V, beta subunit n=1 Tax=Alc... 923 0.0 UniRef50_C9PR37 Exodeoxyribonuclease V beta subunit n=1 Tax=Past... 922 0.0 UniRef50_C9R4S1 Exodeoxyribonuclease V, beta subunit n=5 Tax=Pas... 919 0.0 UniRef50_Q12LP4 Exodeoxyribonuclease V, beta subunit n=3 Tax=Gam... 915 0.0 UniRef50_A7JVG0 Exodeoxyribonuclease V n=3 Tax=Mannheimia haemol... 915 0.0 UniRef50_Q60AZ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Met... 910 0.0 UniRef50_A1S6V0 Exodeoxyribonuclease V, beta subunit n=1 Tax=She... 908 0.0 UniRef50_A3YGC7 Exodeoxyribonuclease V, 135 kDa subunit n=3 Tax=... 908 0.0 UniRef50_Q65TK4 RecB protein n=1 Tax=Mannheimia succiniciproduce... 907 0.0 UniRef50_Q1N2R0 Exodeoxyribonuclease V beta chain n=1 Tax=Berman... 902 0.0 UniRef50_Q1QYD3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chr... 902 0.0 UniRef50_A1AQY7 DNA helicase/exodeoxyribonuclease V, beta subuni... 900 0.0 UniRef50_C8KZ30 Exodeoxyribonuclease V beta chain n=2 Tax=Actino... 897 0.0 UniRef50_Q74CY7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Geo... 897 0.0 UniRef50_Q3IJ14 Exonuclease V, beta chain with recC and recD: 5'... 894 0.0 UniRef50_Q2SQD6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hah... 893 0.0 UniRef50_B0BTM4 Exodeoxyribonuclease V, beta subunit n=6 Tax=Pas... 893 0.0 UniRef50_Q0I3D6 DNA helicase/exodeoxyribonuclease V, beta subuni... 891 0.0 UniRef50_A6VNJ9 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pas... 888 0.0 UniRef50_B5JRL3 Exodeoxyribonuclease V, beta subunit n=1 Tax=gam... 882 0.0 UniRef50_Q2LTC8 Exodeoxyribonuclease V beta chain n=1 Tax=Syntro... 881 0.0 UniRef50_A4JS84 DNA helicase/exodeoxyribonuclease V, beta subuni... 881 0.0 UniRef50_Q8K9A9 Exodeoxyribonuclease V beta chain n=5 Tax=Buchne... 880 0.0 UniRef50_A4SEL9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chl... 871 0.0 UniRef50_B8FB94 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 870 0.0 UniRef50_A1TWK0 DNA helicase/exodeoxyribonuclease V, beta subuni... 868 0.0 UniRef50_C7LVF7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 868 0.0 UniRef50_A8ZX09 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 867 0.0 UniRef50_C5SAK7 Exodeoxyribonuclease V, beta subunit n=1 Tax=All... 864 0.0 UniRef50_Q8D2T8 RecB protein n=1 Tax=Wigglesworthia glossinidia ... 860 0.0 UniRef50_Q7VRE9 Exonuclease V, beta chain n=1 Tax=Candidatus Blo... 860 0.0 UniRef50_A4VRQ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Pse... 859 0.0 UniRef50_C3X2X2 ATP-dependent exoDNAse beta subunit n=2 Tax=Oxal... 850 0.0 UniRef50_A9BRA9 Exodeoxyribonuclease V, beta subunit n=4 Tax=Com... 843 0.0 UniRef50_Q5QUQ8 ATP-dependent exoDNAse (Exonuclease V) beta subu... 843 0.0 UniRef50_C7I4N6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Thi... 842 0.0 UniRef50_C5JAU7 Exodeoxyribonuclease V, beta subunit n=1 Tax=unc... 836 0.0 UniRef50_B5EPU6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Aci... 835 0.0 UniRef50_B1XZ25 Exodeoxyribonuclease V, beta subunit n=1 Tax=Lep... 831 0.0 UniRef50_C1D6T6 RecB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 826 0.0 UniRef50_Q3B472 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pel... 826 0.0 UniRef50_A6DNF2 Exodeoxyribonuclease V, 135 kDa subunit n=1 Tax=... 818 0.0 UniRef50_D0KVH3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hal... 817 0.0 UniRef50_B3ECZ4 Exodeoxyribonuclease V, beta subunit n=5 Tax=Chl... 814 0.0 UniRef50_Q89AB3 Exodeoxyribonuclease V beta chain n=2 Tax=Bacter... 805 0.0 UniRef50_Q1NY14 Exodeoxyribonuclease V, beta subunit n=2 Tax=del... 802 0.0 UniRef50_A4B915 Exodeoxyribonuclease V, beta subunit n=1 Tax=Rei... 800 0.0 UniRef50_B4RTM1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Bac... 798 0.0 UniRef50_A1KCB1 ATP-dependent exoDNAse beta subunit n=3 Tax=Beta... 796 0.0 UniRef50_Q6ANK1 Related to exodeoxyribonuclease V, beta chain n=... 794 0.0 UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=P... 791 0.0 UniRef50_Q7NQR1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Chr... 783 0.0 UniRef50_C6NU55 Exodeoxyribonuclease V beta chain n=1 Tax=Acidit... 783 0.0 UniRef50_C8R0F2 Exodeoxyribonuclease V, beta subunit n=1 Tax=Des... 782 0.0 UniRef50_Q480N9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Col... 771 0.0 UniRef50_Q3JU29 Exodeoxyribonuclease V, beta subunit n=25 Tax=ps... 755 0.0 UniRef50_C1ACJ1 Exodeoxyribonuclease V beta subunit n=1 Tax=Gemm... 750 0.0 UniRef50_A9M3L9 Exodeoxyribonuclease V beta subunit n=30 Tax=Nei... 740 0.0 UniRef50_D1N1Q3 Exodeoxyribonuclease V n=1 Tax=Victivallis vaden... 737 0.0 UniRef50_A7NB27 Exodeoxyribonuclease V, beta subunit n=21 Tax=Fr... 728 0.0 UniRef50_C4GIJ8 Putative uncharacterized protein n=1 Tax=Kingell... 719 0.0 UniRef50_B2I7Y5 UvrD/REP helicase n=11 Tax=Xanthomonadaceae RepI... 718 0.0 UniRef50_B5EAR6 Exodeoxyribonuclease V, beta subunit n=5 Tax=Geo... 717 0.0 UniRef50_C7PDT4 Exodeoxyribonuclease V n=1 Tax=Chitinophaga pine... 717 0.0 UniRef50_A2C8A3 Possible UvrD/REP helicase subunit B n=2 Tax=Pro... 706 0.0 UniRef50_A6LPC4 ATP-dependent helicase/nuclease subunit A n=4 Ta... 703 0.0 UniRef50_B7GM51 ATP-dependent helicase/nuclease subunit A n=1 Ta... 702 0.0 UniRef50_A3DH19 ATP-dependent helicase/nuclease subunit A n=7 Ta... 701 0.0 UniRef50_B0VLS1 Exonuclease V, beta chain n=13 Tax=Acinetobacter... 701 0.0 UniRef50_Q6FF16 Exonuclease V, beta chain n=2 Tax=Acinetobacter ... 699 0.0 UniRef50_Q05XZ6 Putative uncharacterized protein n=1 Tax=Synecho... 697 0.0 UniRef50_UPI0000E0F57F exodeoxyribonuclease V, beta subunit n=1 ... 695 0.0 UniRef50_Q3AX66 DNA helicase/exodeoxyribonuclease V, beta subuni... 694 0.0 UniRef50_Q0IBA6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Syn... 692 0.0 UniRef50_A9BB02 Possible UvrD/REP helicase subunit B n=2 Tax=Pro... 691 0.0 UniRef50_Q8ERW5 ATP-dependent helicase/nuclease subunit A n=1 Ta... 690 0.0 UniRef50_A3YYL1 UvrD/REP helicase-like protein n=1 Tax=Synechoco... 687 0.0 UniRef50_Q71X99 ATP-dependent helicase/nuclease subunit A n=17 T... 686 0.0 UniRef50_B9DZK4 ATP-dependent helicase/nuclease subunit A n=13 T... 685 0.0 UniRef50_C0DS65 Putative uncharacterized protein n=1 Tax=Eikenel... 684 0.0 UniRef50_Q057F5 Exodeoxyribonuclease V, b chain n=1 Tax=Buchnera... 682 0.0 UniRef50_A0AL18 ATP-dependent helicase/nuclease subunit A n=3 Ta... 680 0.0 UniRef50_B6G1B8 Putative uncharacterized protein n=1 Tax=Clostri... 677 0.0 UniRef50_Q8RCZ0 ATP-dependent helicase/nuclease subunit A n=3 Ta... 675 0.0 UniRef50_B5JHV0 UvrD/REP helicase domain protein n=1 Tax=Verruco... 674 0.0 UniRef50_A1HTK7 UvrD-like DNA helicase, C terminal n=1 Tax=Therm... 673 0.0 UniRef50_Q65LJ9 ATP-dependent helicase/nuclease subunit A n=3 Ta... 672 0.0 UniRef50_A5GLW9 Exodeoxyribonuclease V beta chain n=2 Tax=Synech... 671 0.0 UniRef50_B5IMW6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Cya... 667 0.0 UniRef50_B0RMH9 Exodeoxyribonuclease V beta chain n=8 Tax=Xantho... 666 0.0 UniRef50_D2EH37 Recombination helicase AddA n=1 Tax=Pediococcus ... 666 0.0 UniRef50_B5CQ86 Putative uncharacterized protein n=1 Tax=Ruminoc... 665 0.0 UniRef50_Q0TV46 ATP-dependent helicase/nuclease subunit A n=12 T... 663 0.0 UniRef50_D0SDD3 Exonuclease subunit V n=2 Tax=Acinetobacter RepI... 663 0.0 UniRef50_Q46K42 DNA helicase/exodeoxyribonuclease V, beta subuni... 663 0.0 UniRef50_Q18AN9 ATP-dependent helicase/nuclease subunit A n=7 Ta... 663 0.0 UniRef50_A5KIK3 Putative uncharacterized protein n=2 Tax=Ruminoc... 662 0.0 UniRef50_Q1WRS0 ATP-dependent helicase/nuclease subunit A n=3 Ta... 662 0.0 UniRef50_Q15V10 DNA helicase/exodeoxyribonuclease V, beta subuni... 661 0.0 UniRef50_A5D1P3 ATP-dependent helicase/nuclease subunit A n=2 Ta... 661 0.0 UniRef50_A6BJ96 Putative uncharacterized protein n=5 Tax=Clostri... 660 0.0 UniRef50_C7GAA3 ATP-dependent nuclease subunit A n=2 Tax=Rosebur... 660 0.0 UniRef50_A8U8N0 Exonuclease RexA n=3 Tax=Lactobacillales RepID=A... 659 0.0 UniRef50_C0BDK3 Putative uncharacterized protein n=1 Tax=Coproco... 658 0.0 UniRef50_A8VW69 Phospholipase D/Transphosphatidylase n=1 Tax=Bac... 658 0.0 UniRef50_A5ZAT8 Putative uncharacterized protein n=1 Tax=Eubacte... 657 0.0 UniRef50_C0Z545 ATP-dependent nuclease subunit A n=1 Tax=Breviba... 656 0.0 UniRef50_Q03NA7 ATP-dependent helicase/nuclease subunit A n=1 Ta... 653 0.0 UniRef50_Q7U7R4 Probable exodeoxyribonuclease V, beta subunit Re... 651 0.0 UniRef50_C6HV35 UvrD/REP helicase n=1 Tax=Leptospirillum ferrodi... 650 0.0 UniRef50_Q88U41 ATP-dependent helicase/nuclease subunit A n=3 Ta... 649 0.0 UniRef50_B0NWV2 Putative uncharacterized protein n=2 Tax=Clostri... 648 0.0 UniRef50_B1I493 ATP-dependent helicase/nuclease subunit A n=1 Ta... 647 0.0 UniRef50_Q03D71 ATP-dependent helicase/nuclease subunit A n=1 Ta... 647 0.0 UniRef50_A5ZW44 Putative uncharacterized protein n=2 Tax=Clostri... 645 0.0 UniRef50_B1HN90 ATP-dependent helicase/nuclease subunit A n=2 Ta... 644 0.0 UniRef50_A4IKW7 ATP-dependent helicase/nuclease subunit A n=94 T... 644 0.0 UniRef50_B1YKM8 ATP-dependent helicase/nuclease subunit A n=1 Ta... 643 0.0 UniRef50_B2A610 ATP-dependent helicase/nuclease subunit A n=1 Ta... 643 0.0 UniRef50_A6TVN2 ATP-dependent helicase/nuclease subunit A n=2 Ta... 640 0.0 UniRef50_C8ZW81 UvrD/REP helicase n=4 Tax=Enterococcus RepID=C8Z... 640 0.0 UniRef50_A5HYY0 ATP-dependent helicase/nuclease subunit A n=11 T... 639 0.0 UniRef50_Q4L4Y3 ATP-dependent helicase/nuclease subunit A n=65 T... 638 0.0 UniRef50_UPI00019738F0 recombination helicase AddA n=1 Tax=Clost... 638 0.0 UniRef50_C6JEU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 637 0.0 UniRef50_C6LH77 ATP-dependent nuclease subunit A n=1 Tax=Bryante... 637 0.0 UniRef50_B9EAN8 Putative uncharacterized protein n=1 Tax=Macroco... 635 e-180 UniRef50_C8NA25 UvrD/REP helicase n=1 Tax=Cardiobacterium homini... 635 e-180 UniRef50_Q836J8 ATP-dependent helicase/nuclease subunit A n=35 T... 634 e-180 UniRef50_C4Z484 DNA helicase II / ATP-dependent DNA helicase Pcr... 633 e-179 UniRef50_C6CTT6 Recombination helicase AddA n=2 Tax=Firmicutes R... 632 e-179 UniRef50_C9LAG5 ATP-dependent nuclease subunit A n=1 Tax=Blautia... 632 e-179 UniRef50_C1SHH7 ATP-dependent exonuclease V beta subunit, helica... 631 e-179 UniRef50_C4L3Q8 Recombination helicase AddA n=1 Tax=Exiguobacter... 630 e-178 UniRef50_Q6MFB6 Putative exodeoxyribonuclease V beta chain n=1 T... 629 e-178 UniRef50_C0WLM5 ATP-dependent deoxyribonuclease, subunit A n=3 T... 628 e-178 UniRef50_Q3AA35 ATP-dependent helicase/nuclease subunit A n=1 Ta... 627 e-177 UniRef50_C0GDI3 Recombination helicase AddA n=1 Tax=Dethiobacter... 625 e-177 UniRef50_C7XXL2 Recombination helicase AddA n=1 Tax=Lactobacillu... 622 e-176 UniRef50_D1R7X5 Putative uncharacterized protein n=1 Tax=Parachl... 621 e-176 UniRef50_Q0AXU8 ATP-dependent helicase/nuclease subunit A n=1 Ta... 620 e-176 UniRef50_UPI0001C36633 recombination helicase AddA n=1 Tax=Clost... 620 e-175 UniRef50_Q043G6 ATP-dependent helicase/nuclease subunit A n=25 T... 618 e-175 UniRef50_B3WEJ1 ATP-dependent helicase/nuclease subunit A n=8 Ta... 618 e-175 UniRef50_A6NVW3 Putative uncharacterized protein n=1 Tax=Bactero... 617 e-175 UniRef50_C4Z991 DNA helicase II n=1 Tax=Eubacterium rectale ATCC... 616 e-174 UniRef50_UPI0001BC38AF DNA helicase II / ATP-dependent DNA helic... 616 e-174 UniRef50_A3ETY5 Putative exodeoxyribonuclease V, beta subunit n=... 615 e-174 UniRef50_D0BK91 ATP-dependent nuclease subunit A n=2 Tax=Granuli... 613 e-173 UniRef50_Q04GY7 ATP-dependent helicase/nuclease subunit A n=1 Ta... 612 e-173 UniRef50_C4G8V9 Putative uncharacterized protein n=1 Tax=Shuttle... 612 e-173 UniRef50_A7VJ43 Putative uncharacterized protein n=1 Tax=Clostri... 608 e-172 UniRef50_C4ZM86 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pro... 606 e-171 UniRef50_A7VXH9 Putative uncharacterized protein n=1 Tax=Clostri... 602 e-170 UniRef50_C9LTM8 ATP-dependent nuclease subunit A n=1 Tax=Selenom... 601 e-170 UniRef50_C0EV13 Putative uncharacterized protein n=1 Tax=Eubacte... 601 e-170 UniRef50_C0ZQ88 Exodeoxyribonuclease V beta chain n=6 Tax=Coryne... 601 e-170 UniRef50_B9XFA1 Recombination helicase AddA n=1 Tax=bacterium El... 597 e-168 UniRef50_UPI00016C0036 Recombination helicase AddA n=1 Tax=Epulo... 595 e-168 UniRef50_C9KJP8 ATP-dependent nuclease subunit A n=1 Tax=Mitsuok... 593 e-167 UniRef50_A6W6P2 Exodeoxyribonuclease V, beta subunit n=2 Tax=Act... 591 e-167 UniRef50_A5EXI1 Exonuclease V, beta subunit n=1 Tax=Dichelobacte... 587 e-165 UniRef50_C4V2E5 ATP-dependent deoxyribonuclease subunit A n=2 Ta... 587 e-165 UniRef50_C6IZE1 Recombination helicase AddA n=1 Tax=Paenibacillu... 585 e-165 UniRef50_C4G1J5 Putative uncharacterized protein n=1 Tax=Abiotro... 584 e-165 UniRef50_Q897M0 ATP-dependent nuclease subunit A n=1 Tax=Clostri... 582 e-164 UniRef50_D0LU04 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 581 e-164 UniRef50_C9RQA8 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succi... 580 e-163 UniRef50_A8SJB2 Putative uncharacterized protein n=1 Tax=Parvimo... 579 e-163 UniRef50_Q04AN7 ATP-dependent helicase/nuclease subunit A n=3 Ta... 578 e-163 UniRef50_B1C9D6 Putative uncharacterized protein n=1 Tax=Anaerof... 577 e-162 UniRef50_C5RAZ6 ATP-dependent deoxyribonuclease, subunit A n=1 T... 575 e-162 UniRef50_B2GEY4 ATP-dependent helicase/nuclease subunit A n=3 Ta... 574 e-162 UniRef50_A5GUA0 Exodeoxyribonuclease V beta chain n=1 Tax=Synech... 574 e-162 UniRef50_B0PD60 Putative uncharacterized protein n=1 Tax=Anaerot... 572 e-161 UniRef50_C0FS43 Putative uncharacterized protein n=1 Tax=Rosebur... 572 e-161 UniRef50_D0L8X3 Exodeoxyribonuclease V n=1 Tax=Gordonia bronchia... 571 e-161 UniRef50_A2RH77 ATP-dependent helicase/nuclease subunit A n=4 Ta... 571 e-161 UniRef50_B1MZM2 ATP-dependent helicase/nuclease subunit A n=3 Ta... 569 e-160 UniRef50_Q6A850 Exodeoxyribonuclease V beta chain n=3 Tax=Propio... 568 e-160 UniRef50_C0EHH1 Putative uncharacterized protein n=1 Tax=Clostri... 566 e-159 UniRef50_D1C5W8 UvrD/REP helicase n=1 Tax=Sphaerobacter thermoph... 565 e-159 UniRef50_UPI0001C37CA2 recombination helicase AddA n=1 Tax=Rumin... 565 e-159 UniRef50_B0CJK2 Double-strand break repair helicase AddA n=35 Ta... 563 e-158 UniRef50_A7HPC8 Double-strand break repair helicase AddA n=1 Tax... 561 e-158 UniRef50_B0SIS6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Lep... 560 e-157 UniRef50_B9R0C4 Double-strand break repair helicase AddA n=1 Tax... 557 e-156 UniRef50_D1PLS3 ATP-dependent deoxyribonuclease subunit A n=1 Ta... 556 e-156 UniRef50_A8STY9 Putative uncharacterized protein n=1 Tax=Coproco... 556 e-156 UniRef50_Q2VZK9 ATP-dependent exoDNAse beta subunit n=4 Tax=Alph... 553 e-155 UniRef50_Q1GCN8 ATP-dependent nuclease subunit A n=11 Tax=Rhodob... 551 e-155 UniRef50_Q0G5V0 Helicase, UvrD/Rep family protein n=2 Tax=Aurant... 550 e-154 UniRef50_A6WX35 Double-strand break repair helicase AddA n=11 Ta... 549 e-154 UniRef50_C4FTG5 Putative uncharacterized protein n=1 Tax=Catonel... 548 e-154 UniRef50_A3CVM7 UvrD/REP helicase n=1 Tax=Methanoculleus marisni... 548 e-154 UniRef50_Q1JCJ8 ATP-dependent helicase/nuclease subunit A n=14 T... 548 e-154 UniRef50_C7JGX2 DNA helicase II UvrD/Rep n=11 Tax=Acetobacterace... 548 e-154 UniRef50_C7HSP5 Putative uncharacterized protein n=1 Tax=Anaeroc... 544 e-153 UniRef50_Q4FSN0 DNA helicase/exodeoxyribonuclease V, beta subuni... 544 e-153 UniRef50_D1BPN9 Recombination helicase AddA n=3 Tax=Veillonella ... 543 e-152 UniRef50_C7RGF9 UvrD/REP helicase n=3 Tax=Anaerococcus RepID=C7R... 542 e-152 UniRef50_D0SSR4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Aci... 541 e-152 UniRef50_C8S137 Double-strand break repair helicase AddA n=1 Tax... 541 e-152 UniRef50_B8GTW0 UvrD/REP helicase n=1 Tax=Thioalkalivibrio sp. H... 541 e-152 UniRef50_A4W0M7 ATP-dependent helicase/nuclease subunit A n=61 T... 540 e-151 UniRef50_UPI0001C3224E exodeoxyribonuclease V, beta subunit n=1 ... 539 e-151 UniRef50_P96920 Exodeoxyribonuclease V beta chain n=28 Tax=Actin... 539 e-151 UniRef50_A8SI11 Putative uncharacterized protein n=1 Tax=Faecali... 538 e-151 UniRef50_Q2RNR7 UvrD/REP helicase n=2 Tax=Rhodospirillum RepID=Q... 538 e-151 UniRef50_UPI000196B4E2 hypothetical protein CATMIT_00994 n=1 Tax... 537 e-151 UniRef50_A6CDV1 UvrD/REP helicase n=1 Tax=Planctomyces maris DSM... 537 e-151 UniRef50_D2MLK1 DNA helicase, UvrD/REP type n=1 Tax=Candidatus P... 537 e-150 UniRef50_C5RQN8 Recombination helicase AddA n=1 Tax=Clostridium ... 536 e-150 UniRef50_Q1Q4K9 Similar to ATP-dependent DNA helicase subunit Ad... 536 e-150 UniRef50_C7HA04 ATP-dependent exoDNAse beta subunit n=1 Tax=Faec... 535 e-150 UniRef50_Q0FE31 ATP-dependent DNA helicase, UvrD/Rep family prot... 534 e-150 UniRef50_C6AB51 Double-strand break repair helicase AddA n=5 Tax... 534 e-150 UniRef50_Q16CX8 ATP-dependent DNA nuclease, putative n=31 Tax=Pr... 533 e-149 UniRef50_B7AS99 Putative uncharacterized protein n=1 Tax=Bactero... 533 e-149 UniRef50_B0RA36 Putative helicase n=1 Tax=Halobacterium salinaru... 531 e-149 UniRef50_C6QAP4 Double-strand break repair helicase AddA n=1 Tax... 529 e-148 UniRef50_A6UEI6 Double-strand break repair helicase AddA n=17 Ta... 529 e-148 UniRef50_A0P3P8 Helicase, UvrD/Rep family protein n=2 Tax=Rhodob... 529 e-148 UniRef50_C6P6T0 UvrD/REP helicase n=1 Tax=Sideroxydans lithotrop... 528 e-148 UniRef50_Q2FNI4 UvrD/REP helicase n=1 Tax=Methanospirillum hunga... 528 e-148 UniRef50_C8WQE1 UvrD/REP helicase n=1 Tax=Alicyclobacillus acido... 528 e-148 UniRef50_A3UEQ4 Helicase, UvrD/Rep family protein n=1 Tax=Oceani... 528 e-148 UniRef50_B2KE90 UvrD/REP helicase n=1 Tax=Elusimicrobium minutum... 527 e-147 Sequences not found previously or not previously below threshold: >UniRef50_P08394 Exodeoxyribonuclease V beta chain n=100 Tax=Enterobacteriaceae RepID=EX5B_ECOLI Length = 1180 Score = 1323 bits (3423), Expect = 0.0, Method: Composition-based stats. Identities = 1180/1180 (100%), Positives = 1180/1180 (100%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL Sbjct: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ Sbjct: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA Sbjct: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV Sbjct: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA Sbjct: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS Sbjct: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY Sbjct: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS Sbjct: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 Query: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL Sbjct: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL Sbjct: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM Sbjct: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS Sbjct: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL Sbjct: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL 780 Query: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR Sbjct: 781 NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR 840 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN Sbjct: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE Sbjct: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 Query: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE Sbjct: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD Sbjct: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY Sbjct: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA Sbjct: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 >UniRef50_A4TLB8 DNA helicase/exodeoxyribonuclease V, beta subunit n=80 Tax=cellular organisms RepID=A4TLB8_YERPP Length = 1220 Score = 1171 bits (3029), Expect = 0.0, Method: Composition-based stats. Identities = 738/1202 (61%), Positives = 907/1202 (75%), Gaps = 23/1202 (1%) Query: 1 MSDV-AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + L+PL LPL GERLIEASAGTGKTFTI LYLRLLLGLGG AAF RPL VEE+ Sbjct: 1 MTPTTPQRLEPLALPLYGERLIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRRPLMVEEI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 LVVTFTEAAT ELRGRIR NIH LRIAC+R +D+P+Y+ LL EI D A AA LL AER Sbjct: 61 LVVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPMYQALLAEITDWAVAAAQLLAAER 120 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 QMDEAA++TIHGFCQRML NAFESG+LFEQ L++DE L QACADFWRRHCYPLP I Sbjct: 121 QMDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELPLWRQACADFWRRHCYPLPLVI 180 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 A+ V + W GP+ALL D++ YLQGE P + P DDET+ SRH +V +ID +K +WR A Sbjct: 181 ARAVSQEWSGPEALLSDLSAYLQGETPKFRQAPGDDETILSRHQHVVTQIDALKAEWRLA 240 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 EL+ALI SG+D+R ++ + W++K+ WAE+ET YQLP+ LEKF Q L ++TK Sbjct: 241 APELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPKELEKFRQSVLLEKTK 300 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 G P+H LF AID + +PL++RDL++ RA++EIR +V +EKR+R ELGFDD+LS+LD Sbjct: 301 KGA-APQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSVQQEKRQRAELGFDDLLSKLD 359 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 +AL+ GE+LA +IRTR+PVAMIDEFQDTDPQQYRIF ++ Q ALLLIGDPKQAI Sbjct: 360 AALQQSGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTVYGGQEACALLLIGDPKQAI 419 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 YAFRGADIFTY++ARSEV AHYTL+TNWRS+ MV SVN+LFS + F+F +IPFI V Sbjct: 420 YAFRGADIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNRLFSLVNTPFLFEQIPFINVA 479 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 +A KN L F KGE QPA+ WL G+ GV +YQ MA+ CAAQIRDWL AGQ+G+A Sbjct: 480 AAKKNHDLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAE 539 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 L+ +PV+ASDI++LVRSR EAA +RDAL+ L IPSVYLSNRDSVFET EA+++LWL Sbjct: 540 LLTTKGPKPVQASDITILVRSRAEAALIRDALSALAIPSVYLSNRDSVFETTEAKDLLWL 599 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 LQAV+ PE+E LRSA+AT ++GL+A ++ LN+DE AWD +V+EFD YRQ W++RGV+P Sbjct: 600 LQAVLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQRRGVLP 659 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 MLR +M+ R++AENLLAT GGERRLTD+LH+ ELLQEA +QL+SEHAL+RWL+Q I +P+ Sbjct: 660 MLREMMARRHLAENLLATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPN 719 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD 779 + SQQ+RLESD+HLV++VTIHKSKGLEYPLVWLPFI NFR Q+ YHDRHSFEA+LD Sbjct: 720 PQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEALLD 779 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 LNA ES LAE ERLAEDLRLLYVALTRSV+HCS+G+APL++ K+G++D+H+SALG Sbjct: 780 LNADEESQALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQGESDMHRSALG 839 Query: 840 RLLQKGEPQDAAGLRTCIEALC---DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 L+Q G+P DA L + L + DI + D++PWQ + EL A+ R Sbjct: 840 YLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEPPDDKPWQPQPEALPELTARHFTRK 899 Query: 897 PGDNWRVTSYSGLQQRGHG-----------------IAQDLMPRLDVDAAGVASVV-EEP 938 D WRVTSYSGLQQ G Q L+PRLD+DA G +VV E+ Sbjct: 900 MQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGAPLQVLLPRLDIDAVGEQAVVTEDD 959 Query: 939 TLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVL 998 LTPH FPRGA+PGTFLH L E LDF+QP++ W+ E+L+ GF QW PVL +W+ ++ Sbjct: 960 HLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLSERLQQQGFSEQWAPVLHQWLNDIV 1019 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 Q PL +TG +L+ LS KQ E++FYLPI L A LD LI+Q+DPLS CP L+F QV Sbjct: 1020 QTPLTDTGATLAGLSPERKQAELQFYLPIDSLLRAEVLDRLIKQYDPLSRQCPVLDFQQV 1079 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 RGMLKGFIDLVF +G+YYLLDYKSNWLGEDS AYT +AM AM HRYDLQYQLYTLAL Sbjct: 1080 RGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAMTQAMAEHRYDLQYQLYTLAL 1139 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 HRYLRHR+ADYDY+ HFGGVIYLFLRGVD++H GI+ RP LI MD +F+G Sbjct: 1140 HRYLRHRLADYDYQRHFGGVIYLFLRGVDQQHSGHGIFNCRPEQKLIEEMDRLFSGTIGS 1199 Query: 1179 EA 1180 A Sbjct: 1200 NA 1201 >UniRef50_C5BH93 Exodeoxyribonuclease V, beta subunit, putative n=12 Tax=Enterobacteriaceae RepID=C5BH93_EDWI9 Length = 1199 Score = 1118 bits (2893), Expect = 0.0, Method: Composition-based stats. Identities = 696/1186 (58%), Positives = 862/1186 (72%), Gaps = 8/1186 (0%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M +TLDPL LPL G RLIEASAGTGKTFT+AALYLRLLLGLG A+PRPL VEE+L Sbjct: 13 MPMPTQTLDPLTLPLYGARLIEASAGTGKTFTLAALYLRLLLGLGEENAYPRPLAVEEIL 72 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELRGRIRSNIH LR+ACLR +D+PL LL +I D+A AA LL AERQ Sbjct: 73 VVTFTEAATEELRGRIRSNIHALRLACLRGESDHPLLTDLLAQIADQALAASLLLAAERQ 132 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA++TIHGFCQRML+ NAFESG+LF+Q L++DE LR QACADFWRRHCYPL ++A Sbjct: 133 MDEAAIYTIHGFCQRMLSHNAFESGVLFQQTLLQDELPLRRQACADFWRRHCYPLSADLA 192 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + V + W GP+ALL ++ YL GE P+++ P ETLA RH ++ARI+ VK WR+ Sbjct: 193 EAVSQLWSGPEALLAELQPYLSGEMPLLRPAPDAQETLAQRHQVLLARIERVKATWREHE 252 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 ++ LI +SG+D+R ++ KW+D++S WA+ E+ YQLP ++ +F+Q L ++T Sbjct: 253 HQVVGLIAASGVDKRSYSSRYLPKWLDEMSVWAQAESRDYQLPSAIARFAQATLLEKTSK 312 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 G E PRH +F I+ LLAEPLS+RDLV+ RAL EIR+ V EKRRR ELGFDD+L+RLD Sbjct: 313 G-EPPRHSVFTEIESLLAEPLSLRDLVLARALGEIRDGVQLEKRRRAELGFDDLLTRLDQ 371 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA----LLLIGDPK 416 AL G LAAAIR R+PVAMIDEFQDTDP QYRIF+RI+ + LLLIGDPK Sbjct: 372 ALGGAGGAALAAAIRQRYPVAMIDEFQDTDPLQYRIFQRIYTADDARSSETALLLIGDPK 431 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI 476 QAIYAFRGADIFTY++AR+ V A YTL+TNWRSAPG+V +VN LF + + F+F EIPF+ Sbjct: 432 QAIYAFRGADIFTYLRARAAVDACYTLETNWRSAPGVVQAVNALFLRLEAPFLFAEIPFL 491 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 PV SA N R GE Q AM +WL + C +Y TMA+ CAAQIRDWL AGQRG Sbjct: 492 PVASAAANAGRRLTIDGEPQSAMALWLYDVPGCTAQEYLQTMARCCAAQIRDWLSAGQRG 551 Query: 537 EALL---MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 A L +G R + A+D+++LVRSR EA +RDAL+ L IPSVYLSNRDSVF T EA Sbjct: 552 TARLTGGDDGKAGRALCAADMTILVRSRHEATVMRDALSALNIPSVYLSNRDSVFSTPEA 611 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWR 653 +++LWLLQA++TP + TLRSALA ++GL+A ++ L+ DE WD VV+EFDGYR+ W+ Sbjct: 612 RDLLWLLQAILTPAQSRTLRSALAVGLLGLDAAALDALSQDERRWDAVVDEFDGYRRQWQ 671 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 +RGV+PMLR L+ R +AENLLATAGGERRLTD+LH+ ELLQEA QL+SE ALVRWL+Q Sbjct: 672 RRGVLPMLRELIGRRRLAENLLATAGGERRLTDVLHLGELLQEAAAQLDSEPALVRWLAQ 731 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 773 I P A SQQMRLESD+HLVQ++TIHKSKGLE+PLV+LPF+ FR Q Q YHDR + Sbjct: 732 QIDSPQPQAESQQMRLESDRHLVQVITIHKSKGLEFPLVFLPFVATFRRQRQGLYHDRVT 791 Query: 774 FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 833 +AVLDL A +++ LA+ ERLAEDLRLLYVA+TR+V+HC+LG+APLV K+ ++D+ Sbjct: 792 HQAVLDLCADDDALALADQERLAEDLRLLYVAVTRAVYHCALGIAPLVSGNRRKQDESDL 851 Query: 834 HQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL 893 H A+G LLQ+ E DA GL+ ++ L +D I + + PWQ V L A+ Sbjct: 852 HHGAIGYLLQRAEACDAEGLKQALQTLSNDPIHLEILSPCEGTPWQAEPVPPRALCARRF 911 Query: 894 QRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGT 953 R D+WRVTSYS LQQ G +L+PRLD+DAAG + H FPRGA+PGT Sbjct: 912 TRRLQDDWRVTSYSALQQHGGSTYLELLPRLDIDAAGENRTAAATIFSAHTFPRGAAPGT 971 Query: 954 FLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLS 1013 FLH L E LDF DP W+ E+ G + W P L +W+T +LQ PL+E+G++LS L+ Sbjct: 972 FLHDLLEKLDFAAAPDPVWLAEQCLAQGIDLAWVPTLAQWLTQILQTPLDESGLTLSHLA 1031 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 +Q E++FYLPI+ PL A LD LIR+ D LSA C L F QV GMLKGFIDLVF H Sbjct: 1032 PSQRQPELQFYLPIARPLRAEALDALIRRHDALSAQCEALAFSQVEGMLKGFIDLVFCHR 1091 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 GRYYLLDYKSNWLGED +AYT AMAAAM AHRYDLQYQLYTLALHRYLRHR+ DYDY+ Sbjct: 1092 GRYYLLDYKSNWLGEDRAAYTPPAMAAAMIAHRYDLQYQLYTLALHRYLRHRLVDYDYQR 1151 Query: 1134 HFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 HFGGV Y FLRG+ P QG++ RP L+ +D +FAG + Sbjct: 1152 HFGGVFYCFLRGMAGVEPGQGVFACRPEEALVTALDALFAGEQEDG 1197 >UniRef50_A7K3N4 Exodeoxyribonuclease V, beta subunit n=67 Tax=Gammaproteobacteria RepID=A7K3N4_VIBSE Length = 1227 Score = 1096 bits (2834), Expect = 0.0, Method: Composition-based stats. Identities = 560/1202 (46%), Positives = 771/1202 (64%), Gaps = 30/1202 (2%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPR-PLTVEELL 60 L+P+ PL G RLIEASAGTGKTFTIA LYLRLLLG G + R PLTV+++L Sbjct: 19 QPQPTPLEPMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQIL 78 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAATAELR RIR+ IH+ RIA R + +P+ + LL E DD QAA+ LL AERQ Sbjct: 79 VVTFTEAATAELRDRIRARIHDARIAFARGQSSDPVIQPLLNEFDDHKQAAEILLQAERQ 138 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAAV+TIHGFCQRML NAFESG F + + DES L+ Q AD+WRR+ YPLP +A Sbjct: 139 MDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKSQVVADYWRRNFYPLPFTLA 198 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + + W P ALL DI+ YL G + P +LA H + + +ID +K QWR++ Sbjct: 199 GEIRQLWGSPSALLSDISNYLTGAPLSLSVPAM-KGSLADLHTENLKKIDELKAQWRESQ 257 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 + LI S I++R + + + W++ ++AWA ET Y P+ LEKF+Q L ++T Sbjct: 258 DDFLTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEKTPK 317 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 G P+H +FEAI+ LA P+S++ ++ A+ R +A K ++ L FDD+L++L + Sbjct: 318 G-SAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQLSA 376 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 ++ ++ E+LAA IRT +PVAMIDEFQDTDP QY IF RI+ + PE L +IGDPKQAIY Sbjct: 377 SIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNNPECGLFMIGDPKQAIY 436 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVK 479 FRGADIFTY+KAR++V AHYTL TNWRS+ MV +VN++F+ D F++ +IPF+PVK Sbjct: 437 GFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVQAVNQVFALPDSPFIYDSDIPFLPVK 496 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGES--CGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 + + + G+ QPA+ WL E + G+Y + MA+ A+QI+ L Q+G+ Sbjct: 497 YSPNAEKRIWTMGGQKQPALTYWLQEADDKPLPKGEYLTRMAEATASQIQTILTQAQQGQ 556 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEML 597 A L+NG+ + V+A DI+VLVR+ E ++ AL I SVYLSNRDSVF + AQ++ Sbjct: 557 ACLVNGEKQKAVQAGDIAVLVRTGSEGRMIKQALADQGIASVYLSNRDSVFTSSVAQDLQ 616 Query: 598 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGV 657 LLQAV+TPE + LR++LA+ + L+A ++ LNNDE W+ V EF YR++W +RGV Sbjct: 617 RLLQAVLTPENDRALRASLASELFALDAASLDALNNDEVVWENAVNEFKEYRKLWVQRGV 676 Query: 658 MPMLRALMSARNIAENLLAT------AGGERRLTDILHISELLQEAGTQLESEHALVRWL 711 +PMLRA++S R+IAE LL GER LTD++HI ELLQ+A +L+S+H L+RWL Sbjct: 677 LPMLRAVISKRHIAERLLEEGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWL 736 Query: 712 SQHILEPDS---NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY 768 +Q I + ++ + Q RLES+++LVQIVTIHKSKGLEY LV+LPF+ ++R +A Y Sbjct: 737 AQSISDAENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFSYREASEAKY 796 Query: 769 HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 +D + VLD+ S+ A+ ERLAEDLRL+YVALTR+V+ C +G +PL R K+ Sbjct: 797 YDAANDRTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKE 856 Query: 829 GDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGD--NQPWQVNDVSTA 886 T VH+SA+G L+Q G+ L + D+ A + + Sbjct: 857 P-TGVHRSAIGYLIQNGQEGGINDLHQGLTQQQDELDCVVVADPPQQLEEKYVAPQEEIH 915 Query: 887 ELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP------RLDVDAAGVASVVEEPTL 940 +L+AK LQ NWR+TSYSGL ++G A+ +D + + EP Sbjct: 916 DLSAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLLEPER 975 Query: 941 TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW----VREKLELGGFESQWEPVLTEWITA 996 + FPRGA PGTFLHSLFE+++FTQP + +E + +W P+L + I Sbjct: 976 SIFTFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDT 1035 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 VL PL+ + L+Q + + VEMEF LPI L A L+ +I++ DPLSA L F Sbjct: 1036 VLATPLDGKSLLLNQKAPSQRLVEMEFLLPIE-VLSAPALNRVIQRHDPLSAKAGDLGFQ 1094 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 V+GMLKGFIDLVF H+G+YY+LD+KSN LG+D ++Y +A+ +AM HRYDLQYQ+Y L Sbjct: 1095 TVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYAL 1154 Query: 1117 ALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 ALHR+LR R+A+Y YE HFGGV YLFLRG+D + GI+ +P + MD + G Sbjct: 1155 ALHRFLRSRLANYQYEQHFGGVYYLFLRGMDGQS-DHGIFAAKPTLEFLQEMDRLIDGQV 1213 Query: 1177 LE 1178 LE Sbjct: 1214 LE 1215 >UniRef50_C4L7B3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B3_TOLAT Length = 1175 Score = 1036 bits (2680), Expect = 0.0, Method: Composition-based stats. Identities = 542/1185 (45%), Positives = 720/1185 (60%), Gaps = 29/1185 (2%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVV 62 ++ LD L PL G RLIEASAGTGKT+TIA LYLRLLLG G G AAF PL V+ +LVV Sbjct: 1 MSIPLDILTFPLGGLRLIEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVV 60 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFTEAATAELR RI I + R A +D+ L + L+ E D+ A + LL AERQMD Sbjct: 61 TFTEAATAELRQRILKAIRDTRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA++TIHGFCQRML NAFESG LF+ + + +E LR A ADFWR Y +AQ Sbjct: 121 EAAIYTIHGFCQRMLTQNAFESGSLFDNEFLTEEQTLRAGAVADFWRHITYQADALLAQA 180 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 + + WKGP+ LLR+I+ +L ++ P ETLA RH I++R++ ++ W+ A GE Sbjct: 181 LLDHWKGPEDLLREISPHL--ALSGLQCQPRTAETLAERHQAIISRLNMFREAWQAAAGE 238 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 L++LI S +D+R +++ N W+ K+ W +SY LP+ L +F+ L ++K+G Sbjct: 239 LESLISGSDVDKRSYSKKNLPNWLQKVGDWVNAPLSSYSLPKELSRFAGNELAAKSKSG- 297 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362 P HPLF I+ LLA+P I D+VI AL ++R + ++K R+ +L FDD+L+ L AL Sbjct: 298 TVPSHPLFAQIETLLAQPNDIDDVVIADALTQVRARLQQQKLRQQQLSFDDLLTNLARAL 357 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF 422 SE G +LA IR ++PVAMIDEFQDTDP QY+IF ++ H PE +IGDPKQAIYAF Sbjct: 358 NSERGVLLAERIREQYPVAMIDEFQDTDPLQYQIFSTLYAHNPECGFYMIGDPKQAIYAF 417 Query: 423 RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSA 481 RGADIFTYM+A+ +V AHYTL TN+RS +V +VN LF+ + F+++ +IPF V++ Sbjct: 418 RGADIFTYMQAKQQVAAHYTLQTNFRSTDELVTAVNALFAHSGAPFIYQQDIPFEAVRAK 477 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 GK +T L YQ MA AAQI WL Q+ +A L Sbjct: 478 GKKAGFVLQGLPQTALQCCFPLEGTGEVSGAAYQQRMALAAAAQIHTWLVGAQQQQATL- 536 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 D +P+R +DI+VLVRS +EAA ++ AL I SVYLSNR+SVF AQ++ LL+ Sbjct: 537 ---DGKPLRPNDIAVLVRSGREAAVMQQALRECGIASVYLSNRESVFAQAVAQDVARLLE 593 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A + P+ E +R+A+AT + G + LN+DE W+ VE ++WR RG++PML Sbjct: 594 ACLNPQDEMLIRAAMATGLQGWTVSQLARLNDDETLWEQTVEHIRLAGELWRNRGILPML 653 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 R + I E LLA GER+LTD+LH+ ELLQ A + L EHAL+RWL + +P+ + Sbjct: 654 RQWLFWYQIPERLLADTNGERQLTDVLHLGELLQTAASTLNGEHALLRWLLERCHQPNGD 713 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 A QQ+RL+S++ VQIVTIHKSKGL+Y LV LPFI +R + YH LDL Sbjct: 714 ADEQQLRLDSERQRVQIVTIHKSKGLQYGLVLLPFICAYRGNDMPRYH--TGNGVQLDLT 771 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 + + + A ERLAEDLRLLYVALTR V+ LG+A L K D +AL L Sbjct: 772 GSEHAWEKAAEERLAEDLRLLYVALTRGVFVTWLGLADLKINSKTKAKDDRP--AALDYL 829 Query: 842 LQKGEPQDAAG-LRTCIEALCDDDIAWQTAQTGDNQ-PWQVNDVSTAELNAKTLQRLPGD 899 L+ R ++ L + D A + A+ Q P+ V A+ Sbjct: 830 LKNDSDSALTVRFRQWLQQLNNHDRAAEVAEIAFPQTPYHEISVPLPAPQARHFSGQLER 889 Query: 900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLF 959 NWRVTSYS L P + + P FPRGA GTFLHSL Sbjct: 890 NWRVTSYSALT----VSHSTYQPTPPLPVVVSDEEPQAPRFDVFSFPRGAHAGTFLHSLL 945 Query: 960 EDLDFTQPVD--PNWVREKLELGGF-----ESQWEPVLTEWITAVLQAPLNETGVSLSQL 1012 EDLDF W+ E L+ W+PVL +W+T +L + L G+SLSQL Sbjct: 946 EDLDFGADDAFCRKWITEHLQGVQLSHDWQPEPWQPVLEQWLTQILNSELF-PGLSLSQL 1004 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + + EMEF LP++ PL A L+ + D LSA PPL F +V+GMLKGFIDLVF H Sbjct: 1005 TPQQCLSEMEFLLPLA-PLSAPALNRCLAAGDALSANAPPLAFNEVQGMLKGFIDLVFEH 1063 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +GR+Y++DYKSN+LG++ +AY Q AMA AM HRYD+QYQLYTLALHRYLR R+ DYDYE Sbjct: 1064 QGRFYVVDYKSNYLGDNPAAYQQDAMAQAMLEHRYDVQYQLYTLALHRYLRCRLPDYDYE 1123 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 H GGV YLFLRG++ + G+Y T+P+ IA +D +FAG + Sbjct: 1124 RHIGGVCYLFLRGMNGD-AGSGVYATKPDKQHIAALDALFAGQSE 1167 >UniRef50_Q2BKD8 ATP-dependent exoDNAse beta subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKD8_9GAMM Length = 1179 Score = 1017 bits (2631), Expect = 0.0, Method: Composition-based stats. Identities = 512/1202 (42%), Positives = 723/1202 (60%), Gaps = 48/1202 (3%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V LDPL PL G++LIEASAGTGKT+TI A L L L LG +PL +++L Sbjct: 1 MTKV-HALDPLTFPLVGQQLIEASAGTGKTYTITA--LYLRLLLGLGQVGDKPLGPDQIL 57 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELR RIR I + R + L + +P L +++D AQA + L A RQ Sbjct: 58 VVTFTEAATEELRDRIRQRIVDARNSFLTDQVSDPFLAALKAQVNDIAQAVKLLDQAIRQ 117 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTIHGFCQRML +AFESG LF+ +L +D+ L A D+WR + YP+ +A Sbjct: 118 MDEAAIFTIHGFCQRMLKRHAFESGSLFDTELTQDDQSLVRSAVLDYWRNNIYPMQGAVA 177 Query: 181 QVVFET-WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 +VF W+ P+ L+ D+ + + + P L + + + ++ KQ W Sbjct: 178 DLVFNHCWQSPEQLIMDLRGLIGRQIRLE--PDLSRVNLQEAYDEWIETLNNFKQAWLAN 235 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWA--EEETNSYQLPESLEKFSQRFLEDR 297 +L +LI++S +++R + +++ KW+ +I +A E+ L L++F+Q L ++ Sbjct: 236 SDDLQSLIQASDVNKRSYTKASLPKWLAQIDQYAASEQLEPGKTLKGILQRFTQSVLIEK 295 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 T G P HPLF ID LLA + +R++++T AL E+ +AR K FDD+L+ Sbjct: 296 TTKGA-APEHPLFVQIDDLLASSVPVREILLTSALKEVETRLARTKAEYQLQTFDDLLTG 354 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ 417 +AL + +L +A+R +FPVA+IDEFQDTDP QY IF ++ +AL++IGDPKQ Sbjct: 355 FSAALSVDQTGLLVSAVREQFPVALIDEFQDTDPLQYGIFSHLYSDPFNSALVMIGDPKQ 414 Query: 418 AIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE-IPFI 476 AIYAFRGADIFTY++AR V YTLDTNWRS GMV++VNKLF D AF++ E IPF Sbjct: 415 AIYAFRGADIFTYIQARRSVSETYTLDTNWRSTSGMVDAVNKLFQFADSAFIYDEDIPFT 474 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 PVK+AGK+ + + E L E Y S AQ A++I L Sbjct: 475 PVKAAGKSAKKLTIQQHEPAALNIWHLESEEPLNKVQYLSAFAQSTASEIDRLLSG---- 530 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 R V SDI+VLVR R EA ++R AL + E P VYLSN+DSVF + EA E+ Sbjct: 531 ----DASIGDRSVEGSDIAVLVRDRFEAEEIRRALAVYEHPCVYLSNQDSVFNSQEALEL 586 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRG 656 +L AV P+ E L++ALAT ++ N ++ LN DE+AW+ VV EF Y++IW K G Sbjct: 587 SLILAAVEQPQNERALKAALATEILLQNVQQLDQLNYDENAWEGVVAEFTEYQEIWLKLG 646 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHIL 716 V+P L ++ RN++ LL GGERRLT++LH++ELLQ+A +++E L+RW ++ I Sbjct: 647 VLPCLSRMLHQRNLSARLLEQMGGERRLTNLLHLAELLQQASSEVEGTSGLIRWFNEQIA 706 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEA 776 P + + +RLES+++LV IVTIHKSKGLEYP+V+LPFI NFR Q+ AFYHD A Sbjct: 707 NPSGASDDKILRLESERNLVTIVTIHKSKGLEYPIVFLPFIANFREQKTAFYHDDEGT-A 765 Query: 777 VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 VLDL++ +++ A+ ERLAE+LRLLYVALTRSV+ C LG+A + K + + S Sbjct: 766 VLDLSSGEGALEEADKERLAEELRLLYVALTRSVYRCYLGLADIRLGNSKK---SRLSDS 822 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQ-----VNDVSTAELNAK 891 A+G LL + + L + L A Q D+ + V++ L+ + Sbjct: 823 AIGYLLLQ----NGDNLDEALSQLSQVSDAIQICSPPDHGAQKDMFAFVDEPEMEALSVR 878 Query: 892 TLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD--AAGVASVVEEPTLTPHQFPRGA 949 +WRV+SYS L + ++P LD++ V + +T FP+GA Sbjct: 879 EFSGKIDRSWRVSSYSALSRHSAE-HLPVLPGLDLEVVEESGEEQVGDDGMTIFNFPKGA 937 Query: 950 SPGTFLHSLFEDLDF--------TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAP 1001 + GTFLHS+FE++DF + + E+L L G+E W+PV+ + I VLQ Sbjct: 938 NAGTFLHSVFEEIDFYTYLHNPECRIEYQAQISEQLILAGYEEAWQPVIDQLIVDVLQTE 997 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 L + G SL Q+ +++ VEMEF L L +QL+ LIR++D LSA P+ F ++GM Sbjct: 998 LGDGGFSLGQVRDKDRLVEMEFMLKADH-LQVAQLEGLIRRYDALSAQTRPVAFEPLKGM 1056 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 LKGFIDL+FR + RYY+LDYKSN LG + YTQ+A+ AM HRYDLQY LY+LA+HR Sbjct: 1057 LKGFIDLLFRVDDRYYVLDYKSNHLGNRADCYTQEALERAMAEHRYDLQYLLYSLAVHRL 1116 Query: 1122 LRHRIADYDYEHHFGGVIYLFLRGV-----DKEHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 L R+ +YDY+ HFGGV YLFLRG+ D + G+++ RP LI MD++FAG Sbjct: 1117 LMQRVPNYDYDKHFGGVFYLFLRGMTACGKDSGNTTLGVFSNRPERELIEKMDQLFAGEL 1176 Query: 1177 LE 1178 + Sbjct: 1177 IN 1178 >UniRef50_A1SUW1 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Psychromonas RepID=A1SUW1_PSYIN Length = 1226 Score = 1012 bits (2618), Expect = 0.0, Method: Composition-based stats. Identities = 473/1206 (39%), Positives = 698/1206 (57%), Gaps = 42/1206 (3%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+ L PL G+RLIEASAGTGKT+TIA+L++RLLLG G AA PLTV+++LVVTFT Sbjct: 17 QPLNALTFPLYGQRLIEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVTFT 76 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAATAELR RIR I ++R+ ++ +DNP + LL+E+ D A + L AE QMDEAA Sbjct: 77 EAATAELRNRIRERIQDVRLDFIQGESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDEAA 136 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQRML NAFESG LFEQ L+ED++ L AC DFWR Y L + +++F Sbjct: 137 IFTIHGFCQRMLMQNAFESGSLFEQNLLEDDAQLLQLACNDFWRTFFYGLSTPLTELIFS 196 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 W+ P L +++ +L D + +++ + ++ I+T+K W + + Sbjct: 197 YWENPGQLQKNLRPFLSRSDLHFLPKINDFD-FKAKYERSISFIETLKINWLNDQSDYAD 255 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 +I S + +R +++ N W+ ++S WA + S LP+SL KFSQ+ L+++T G E P Sbjct: 256 IITHSAVSKRSYSKKNIPNWLKEVSQWALTSSASLSLPKSLVKFSQKTLDEKTPKG-EIP 314 Query: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE 365 HP+F I+ LLA LS+ + ++ +A ++ + K ++ LGFDD+L+RLD+AL++ Sbjct: 315 THPVFSEIEALLALDLSLENTILVKATHWVQAHLQSNKNKQMLLGFDDLLTRLDAALQNG 374 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---------QPETALLLIGDPK 416 + + LA IRT +P+A+IDEFQDTDP QYRIF I+ L +IGDPK Sbjct: 375 NEKSLALNIRTAYPIALIDEFQDTDPVQYRIFTTIYQSLEGEDSEPLDKSLGLFMIGDPK 434 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-REIPF 475 QAIY+FRGADIFTYMKAR V AHY+LD N+RS P M+++ N F F++ +IPF Sbjct: 435 QAIYSFRGADIFTYMKARQNVSAHYSLDYNYRSTPEMIDASNTFFEFCPAPFIYNDDIPF 494 Query: 476 IPVKSAGKNQALRFVFKGETQPAMKMWLM-EGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 V++ K + V + + + ++ ++ C +I+ L Q Sbjct: 495 SAVQAPDKRRKKLVVENKDDPAQSALQFIHPVGGENSQGFKDSITHACINEIKKILLLAQ 554 Query: 535 RGEALLMNGDDARP-VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 + +A L + R +RA+ I+VLVR+ +EA +R+AL I SVYLS ++SV+ T A Sbjct: 555 QDKAYLEDKKGKRSIIRANHIAVLVRTGKEAQLIRNALFNENINSVYLSLKESVYATSHA 614 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWR 653 +++L +LQA + PE E LR+A+A + + + + W+ + +F YR+ WR Sbjct: 615 KDLLRILQACLNPENERLLRAAIACKLFCQTPYQVHQILLNTRLWEEKIGQFIEYRRQWR 674 Query: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 G++ ML L + I+ LL GER LTD+LH++ELLQ+ + E AL+RW + Sbjct: 675 SVGILAMLHKLFHQQAISAYLLKDTQGERLLTDVLHLAELLQKNSVDHDGEFALLRWFGE 734 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 773 I + +S S Q+ RLES+K LVQ+ T+HK+KGL+Y +V++PF ++ + YHD Sbjct: 735 QIKQGNSGESEQKQRLESEKDLVQVSTLHKAKGLQYDIVFMPFTGLYQKPQACLYHDPDQ 794 Query: 774 FEAVL-DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 A++ DL + LAE E+LAEDLRLLYV LTRSV+ C +G+ + R + ++ Sbjct: 795 NNALIFDLQNTKNNAALAEKEQLAEDLRLLYVGLTRSVYRCYIGIGNYKKGR---EKNSP 851 Query: 833 VHQSALGRL-LQKGEPQDAAGLRTCIEALCDDD-----IAWQTAQTGDNQPWQVNDVSTA 886 + +SALG + LQ G+ A + L I+ + D +Q Sbjct: 852 LCKSALGYICLQAGKGLLAGDTEQLNKQLQKMADNSLNISIRPTPLLDETHYQARQSDQP 911 Query: 887 ELNAKTLQRLPGDNWRVTSYSGLQQ----------RGHGIAQDLMPRLDVDAAGVASVVE 936 L + NW ++SYS L + + + +++ Sbjct: 912 LQAPLVLGKQVERNWWISSYSSLSRFHTQTNTQVASVTPTVMPIDNISNEQTEVSPAILT 971 Query: 937 EPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGF--ESQWEPVLT 991 P TP FPRGA GTFLH LFE + + E+L L + W PVLT Sbjct: 972 SPEKTPFSFPRGAKHGTFLHELFELTNLENMETETLNELLFEQLLLRHYPDPELWAPVLT 1031 Query: 992 EWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC 1050 WI +L L + L LSA+ K++EM+F++P+ + L A++++ L++++DPLSA Sbjct: 1032 AWIEQILGHDLAAGADIKLGDLSAQQKKIEMQFFIPM-QELQANEVNNLLKKYDPLSARA 1090 Query: 1051 PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 L+F V+G LKGFIDL F G+YY+LDYKSN LG+ Y Q +M A+ HRYD Q Sbjct: 1091 GELQFRTVQGFLKGFIDLTFEKNGQYYVLDYKSNHLGDCLQDYNQTSMEQALIEHRYDFQ 1150 Query: 1111 YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDE 1170 YQLYTLALHR L+ R+ADYDYE H GGV Y FLRG+ E + G+Y +P+ LI +D+ Sbjct: 1151 YQLYTLALHRLLKSRLADYDYETHIGGVFYTFLRGMQGEQ-EYGVYFVKPSFSLIDGLDK 1209 Query: 1171 MFAGMT 1176 +F+G Sbjct: 1210 LFSGQK 1215 >UniRef50_Q493D5 Exonuclease V n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493D5_BLOPB Length = 1187 Score = 994 bits (2571), Expect = 0.0, Method: Composition-based stats. Identities = 490/1186 (41%), Positives = 730/1186 (61%), Gaps = 14/1186 (1%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 L+ L LPL G LIEASAGTGKT+T+ +Y+RLLL LG + F RPLTV+E+LVVTF Sbjct: 1 MRNLNVLELPLYGINLIEASAGTGKTYTLIIIYIRLLLCLGNRSDFSRPLTVKEILVVTF 60 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 T++A ELR RIR NIH+ R+ C+R + N L+ +LL +I + A L AE+++++A Sbjct: 61 TKSAVRELRHRIRENIHQFRLDCMRGYSHNFLFSKLLLQIHNVELAINQLSEAEKKINQA 120 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 ++FTIH FCQ +LN N E MLF ++++E++L QAC DFWRR+ Y LP IA+++ Sbjct: 121 SIFTIHSFCQNILNHNTIELNMLFNTNIVDNETILYQQACTDFWRRNFYSLPLNIARLIQ 180 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKA----PPPDDETLASRHAQIVARIDTVKQQWRDAV 240 E WK P +LL DI Y+ + D +++ + + +I+ ++ VK++W Sbjct: 181 EYWKDPNSLLNDIIPYIYRARSNLDCYNHNVHEDKKSIITYYEKILDHVNHVKKEWLKNK 240 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 + ++ S I+RR +N+SN +WID+I+ W + T + P L++F L+ + Sbjct: 241 HNIITILNSYDINRRIYNKSNLIRWIDRINQWVKRPTIDHTTPNDLQRFRTTELKIHNNS 300 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 LF+++++L ++ S + + A+ EI + + R E+ +D++ L Sbjct: 301 NKSDYICTLFDSVEKLYSQLSSFKTSIFKIAINEIHNDLNNTQHYRSEITLNDLVDVLAH 360 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 L + LA +RTR+PV +IDEFQDTD QQ++IF +++ E L+LIGDPKQ+IY Sbjct: 361 HLVKDKDNKLAHILRTRYPVTLIDEFQDTDCQQFKIFSTLYNSDSENGLILIGDPKQSIY 420 Query: 421 AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 AFRGADIF+YMK R V Y L+ NWRS+ +VN+VN+LF + F+F +IPFIP + Sbjct: 421 AFRGADIFSYMKIRRTVCNKYNLNINWRSSLNIVNAVNQLFQLVSNPFIFEDIPFIPSVT 480 Query: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 A +N RF+ ++Q AM WL E +GDY+ +MAQ CA + + L + G A L Sbjct: 481 ASRNSMYRFLINNQSQTAMCFWLHPDEIVTIGDYKRSMAQECATILYNLLHEIRNGTAWL 540 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 N R + SDI+VLVR+ +EA+ + AL+ + I +V+LSN ++FET+E+ E+ LL Sbjct: 541 ENDKYKRKLEISDITVLVRNHEEASLICSALSKVNISTVFLSNHKNIFETMESYELSLLL 600 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM 660 +A++ PE +T+ +AL T GLNA DIE++NN+E + + E+F Y +W+K+GV M Sbjct: 601 RAILFPE-SHTICTALTTVFFGLNATDIESINNNESKQERIFEKFFEYYSVWKKKGVYLM 659 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS 720 ++ ++ + E LL+T GE L +ILH+ ELLQ+A QL+ EHAL+ WL I +P + Sbjct: 660 IQKVIFDHKVPEKLLSTRVGESSLINILHLGELLQDAARQLQDEHALMEWLILKITQPKN 719 Query: 721 NASSQQ-MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD 779 +S Q +RL SD L++I TIHKSKGLE+PL++LPFI +F + F+HDR S++ L+ Sbjct: 720 KKTSDQNLRLGSDHQLIKISTIHKSKGLEFPLIFLPFIADFNYVKNPFFHDRKSYKTHLN 779 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG-DTDVHQSAL 838 N + + LA+ ERL+EDLRLLYVA+TRS++HCS+G+ P+VRR K + D+H SAL Sbjct: 780 FNTSKSHLTLADEERLSEDLRLLYVAVTRSIYHCSIGIGPIVRRYKKKSNTNNDLHHSAL 839 Query: 839 GRLLQKGEPQDAAGLRTCIEAL---CDDDIAWQTAQTGDNQPWQVNDVST-AELNAKTLQ 894 G L+QK +AA L+ ++ L + DI+++ + V++ L K + Sbjct: 840 GYLIQKKTSGNAATLKKHLKKLSVYSNGDISFRIISKSQELFSHASSVASNQLLCGKKWK 899 Query: 895 RLPGD-NWRVTSYSGLQQRGHGIAQDLMPRLDVD-AAGVASVVEEPTLTPHQFPRGASPG 952 P W +TS+S LQ G+ L +D + + S E LTPH FP+G G Sbjct: 900 TSPNVIPWSITSFSALQHTDVGVTTYLNLEKQLDISEHIQSQENEIPLTPHTFPKGKVCG 959 Query: 953 TFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQL 1012 +F HS+F+ LDF + VD W+ +E + W V+ EWI VL PLN ++L+Q+ Sbjct: 960 SFFHSIFQVLDFRKLVDMKWLYAHMERYNIDPIWGFVVREWIYIVLNTPLNN-NLTLAQI 1018 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 NK+ E++FYL I+ L + +LD L +++DP+S L F+ + GMLKGFIDL+FR Sbjct: 1019 IPENKKTELKFYLSINTYLTSEELDHLCKKYDPVSRKSSSLTFLDITGMLKGFIDLIFRW 1078 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 RYYLLDYK+NWLG+++ Y + M H Y LQYQLYTLALHR+LR+R+ Y+YE Sbjct: 1079 NHRYYLLDYKTNWLGDNNKDYVGSKIRQEMIKHHYALQYQLYTLALHRFLRNRLVSYNYE 1138 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 FGGV YLF+RG+D GIY RP + I +D +F+ L Sbjct: 1139 KDFGGVYYLFIRGMDGTPLSNGIYFFRPLSTFINKLDNLFSKNNLN 1184 >UniRef50_A8FUM4 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gammaproteobacteria RepID=A8FUM4_SHESH Length = 1251 Score = 981 bits (2537), Expect = 0.0, Method: Composition-based stats. Identities = 471/1222 (38%), Positives = 661/1222 (54%), Gaps = 65/1222 (5%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 ++ LD L LP G RLIEASAGTGKTFTIA LY+RLLLG +PL+ E++LVVT Sbjct: 28 RSKPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGH----EIEKPLSCEQILVVT 83 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQM 121 FT AAT ELR RIR I + TD+ L E L L ++ A + L LA + + Sbjct: 84 FTNAATGELRDRIRRKIQLAYRRFIGLETDDDLIESLYRLTPESERHLALKRLDLALKSL 143 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEA++FTIHGFCQR+L AFES +LFE + D+S + A DFWR CYPLP +A+ Sbjct: 144 DEASIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWREQCYPLPEYLAE 203 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 ++ + + P AL + + L + P + L Q ++R+ + + RDA+ Sbjct: 204 IIQKKFADPDALSKQLRPLLGASQASAQPVPQEFTKLQQTLTQSLSRLKLIWPRERDAIE 263 Query: 242 ELDALIESSGID--RRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 L + SG+ ++ A +D + W + + LP S E + Sbjct: 264 TLLHALPLSGVRFGKKADAYPKLAIMLDAMDNWCKFSNS---LPPMKVMESLSLSELKLN 320 Query: 300 AGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLS 356 GGE P + P+ + I++L A + A I A++K R L DD+L Sbjct: 321 KGGEVPTPEQAPVLDHIERLCALIKDFIPSFLFCARNGISARFAQQKSERNLLTPDDLLI 380 Query: 357 RLDSALRSESGE------VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH------- 403 L+ ALR E LA I RFPVA+IDEFQDTDP Q+ IF RI+ Sbjct: 381 TLEQALRPNQEEVSGQAISLANTIAKRFPVALIDEFQDTDPLQFAIFNRIYQQPSVDAMG 440 Query: 404 ----------------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNW 447 +LL+IGDPKQAIYAFRGADI TY++AR + HY LDTN+ Sbjct: 441 SDDSLIAIDEATAGTSSKNLSLLMIGDPKQAIYAFRGADIHTYIQAREQTSEHYNLDTNY 500 Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 RS+ M+ +VN LF DDAF+ + IPF V + V K T A+K+ L+ + Sbjct: 501 RSSRNMILAVNALFENRDDAFISQAIPFESVLPSPFADNKVLVEKSTTTSALKIKLLSED 560 Query: 508 SC---GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + +A+ A++I L Q GE + +P++A DI+VLVR R EA Sbjct: 561 PEKGLNKTTARKHLAEDAASEIARLLTESQDGECTISE----KPLKAKDIAVLVRDRNEA 616 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 A ++++L+ +I +V+LS RDSVF TLEA+EM +L A+ TP+ E LRSALATS++G N Sbjct: 617 AVIKESLSNRQIGAVFLS-RDSVFNTLEAREMALVLHALATPKDERALRSALATSLLGYN 675 Query: 625 ALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 AL I N DE ++E+FDG W +RGVMP L L + + E LL + GERRL Sbjct: 676 ALAIHGFNQDEMVRQTLLEQFDGLHHNWLRRGVMPALLNLANETKLIERLLQSEDGERRL 735 Query: 685 TDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKS 744 TD H++ELLQ+ T+L+ ALV W Q ++E + Q+RLES+++LVQIVTIHKS Sbjct: 736 TDFRHLAELLQQKATELDGISALVNWYEQALIE-NHANEEAQLRLESEQNLVQIVTIHKS 794 Query: 745 KGLEYPLVWLPF--ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 KGLEYP+ ++PF + ++ A + + V D+ + E + + E LAEDLRLL Sbjct: 795 KGLEYPVCFIPFVSLARDNRRKPAPMLYHENNKLVWDIEQSDEGWERHKRENLAEDLRLL 854 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT-CIEALC 861 YVA+TR V+ C L +A R + +H++ +G LL E L + L Sbjct: 855 YVAMTRPVYQCYLYIANHCRFTKKAGITSQLHETGIGYLLGIEEKACEFSLIETSAKRLM 914 Query: 862 DDDIAW-QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR-GHGIAQD 919 + I+ + A +Q + L K L+R WRV SYSGL + H Sbjct: 915 SEAISVCEMADDVSSQVLEKMSDDQELLAPKVLKRRLYTPWRVGSYSGLVKDLPHERVLP 974 Query: 920 LMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD--PNWVREKL 977 +P + F RGA+ G+F+H + E +DFTQ + + + Sbjct: 975 GADDEAFPELEEIKDELDPLPSRFTFERGANAGSFMHLVLELIDFTQAENGLTEQLPVAM 1034 Query: 978 ELGGFESQWEPVLTEWITAVLQAPLNETG-VSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 E G + W VLT W +L AP+ + G + L QL+ K VEMEFYLPI+ L A +L Sbjct: 1035 ERYGIDESWLDVLTHWYLDLLDAPIVQDGSLKLGQLTNNQKLVEMEFYLPIAA-LKADKL 1093 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 + L++++ L F ++GMLKGFIDL F H+G++Y+ DYKSN LG+D + Y Sbjct: 1094 NALLQEYG----YSAGLNFESLKGMLKGFIDLTFEHQGQFYIADYKSNHLGDDFTHYGPD 1149 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIY 1156 +M A+++HRYDLQY +YTLALHRYL R+ DYDY+ H GG YLFLRG+ P G++ Sbjct: 1150 SMRGAIRSHRYDLQYIIYTLALHRYLSLRMPDYDYDRHIGGSYYLFLRGMSVGAPMSGVF 1209 Query: 1157 TTRPNAGLIALMDEMFAGMTLE 1178 +P GLI +D +F E Sbjct: 1210 YDKPAKGLIESLDALFDDEQTE 1231 >UniRef50_D2BZV4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Dickeya dadantii Ech586 RepID=D2BZV4_DICD5 Length = 1230 Score = 976 bits (2524), Expect = 0.0, Method: Composition-based stats. Identities = 480/1242 (38%), Positives = 672/1242 (54%), Gaps = 84/1242 (6%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S + LD LR PL G RLIEASAGTGKTFTIA LY+RL+LG GG AF RPL ++LV Sbjct: 4 SALPSALDVLRFPLCGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEHAFSRPLNPPDILV 63 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLR---------ETTDNPLYERLLEEIDD--KAQA 110 VTFT+AAT ELR RIR+ + + + +PL L + Sbjct: 64 VTFTDAATRELRDRIRARLAQAAAYFQPNDKGGTAGEDDEVDPLLRELRADYPSEQWPDC 123 Query: 111 AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 A+ L LA MDEAAV TIH +C RML +AF+SG LF Q L D+S L + D+WR Sbjct: 124 ARKLQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSELLLEVVRDYWRT 183 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 +PL + ++W P+ R + L A I + ++ A+ ++ Sbjct: 184 FFFPLDARDVLELRDSWAAPEDFYRSVTPLL-DYADEIGIDDLPAQIFSTVRAEKTRQLA 242 Query: 231 TVKQQWRDAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 +K W EL L+ ++ D RK W+DK+ WA + + + Sbjct: 243 ALKAPWTQWCDELRDLLNAAVAAKKADGRKLQARYFDPWLDKLQHWASSDETTLDIGTGW 302 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQL---LAEPLSIRDLVITRALAEIRETVAREK 343 + + + L + K E P HP A++ L L++ R ++ A I + E+ Sbjct: 303 TRLTPQGLRECWKIPDEAPSHPALRAMETLAQQLSDLPEPRSQLLRHACRWIHQRFRSEQ 362 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH- 402 R ++GF D+L+RLD ALR ++GE LA IR +FPVAMIDEFQDTDP QYRIF ++ Sbjct: 363 ESRAQMGFQDLLTRLDGALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRV 422 Query: 403 --HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNK 459 + P+ L+LIGDPKQAIYAFRGADI+TY++AR + HYTL TN+RS MV++VN+ Sbjct: 423 ATNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVDAVNQ 482 Query: 460 LFSQTDDAFMFRE------------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLME-G 506 +F Q ++ +PF+PV++ G++ V +G A+ W +E Sbjct: 483 VFMQAENRANGAGAFLFRQPDGDNPVPFLPVQANGRDDIW--VQEGTPAAALTCWTLETD 540 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEA-LLMNGDDARPVRASDISVLVRSRQEAA 565 E +Y+ MA CA ++ LQ G++G+A + + RPV+ D++VLV + +EA Sbjct: 541 EPLSSSEYRQRMAAGCAREMVRLLQLGEQGQAGFVSSDQRWRPVKPGDMAVLVNTGREAM 600 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 VR L+ + SVYLS+R+SVF++ A E+ L A PE + LR+ALAT ++GL+ Sbjct: 601 AVRAQLSARGVRSVYLSDRESVFDSPLAGELHCWLSACADPENDRLLRAALATPLLGLSW 660 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 ++ LN+DE W+ V +F Y+Q WR++GV+PMLR L+ ++ LLA R LT Sbjct: 661 QALDRLNHDEQEWERRVMQFVRYQQCWRQQGVLPMLRRLLWEFDVPRRLLAADNA-RALT 719 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 D+LH+SELLQ+A L+ EHAL+R+L++ + + S ++RLESD LV++VT+HKSK Sbjct: 720 DVLHLSELLQQASVHLDGEHALIRYLAEQCQADNPGSDSLKVRLESDADLVKVVTVHKSK 779 Query: 746 GLEYPLVWLPFITNFRV---QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 GLEYPLV+LPF FR ++ + L+L A+ E+V A+ ERL EDLR Sbjct: 780 GLEYPLVFLPFACAFRTVSHRDVPLKFHDDDGQPRLELIASDEAVARADHERLGEDLRKF 839 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVALTR+ + LGVAPL + +SA G LL GEP +A L +C+ Sbjct: 840 YVALTRARYALWLGVAPLKE----------LEKSAPGYLLGAGEPVEAGQLASCLSLWIG 889 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP 922 D+ ++ + A L + WR+TSYSGLQ G Q+ Sbjct: 890 PHSQIAPLPESDDAVYRAARETPALGQEPPLPDIRRHRWRITSYSGLQLAPEGQYQERRE 949 Query: 923 RLDVDAAGVASVVEEPTLTPHQ----------------FPRGASPGTFLHSLFED----- 961 DAA V S +E P + FPRGA PG+FLH L E Sbjct: 950 SAAHDAAEVQSARQETFSEPQETAERLPPLPVGYDMYSFPRGAVPGSFLHGLLEWAGKEG 1009 Query: 962 ---LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN---ETGVSLSQLSAR 1015 L +P + V + G+ W P+LT+W+ A L PL ++S Sbjct: 1010 FAALAADRPRVEDQVARRCNRQGWTP-WIPMLTDWLMAQLNQPLALPASPAGTVSLAGLT 1068 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 QVEMEF+ +++ + +LD + A PL + GMLKGFIDLVF H+GR Sbjct: 1069 QYQVEMEFWFALNQ-VDTQRLDQQVSAATLAGAPRVPLMRDALNGMLKGFIDLVFEHQGR 1127 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 YY+LDYKSNWLG D++ Y MA AM HRYDLQ LY ALHR LR R+ DYDY+ H Sbjct: 1128 YYVLDYKSNWLGADAADYDLAHMARAMLDHRYDLQLALYLFALHRLLRSRLPDYDYDRHV 1187 Query: 1136 GGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 GG +YLFLRG + P G+Y RP+ LI +D +F+G T Sbjct: 1188 GGALYLFLRG--SQAPGGGVYAERPDRTLIDALDRLFSGDTE 1227 >UniRef50_C0QI07 RecB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI07_DESAH Length = 1242 Score = 972 bits (2512), Expect = 0.0, Method: Composition-based stats. Identities = 456/1244 (36%), Positives = 653/1244 (52%), Gaps = 81/1244 (6%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + LD L PL G RLIEASAGTGKT+TIAALY+RL+LG G F RPL E+LVVT Sbjct: 1 MNRKLDALTFPLHGTRLIEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVT 60 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI--DDKAQAAQWLLLAERQM 121 FT AAT ELR RIR+ + E +P + L ++ D A L A M Sbjct: 61 FTNAATQELRERIRARLTEACAFFRGRGGGDPFLQGLKDDYSPGDLPAMANLLERAALWM 120 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DE+A+ TIH +CQRML +AF+S LF+ L + L +A DFWR + YP E Q Sbjct: 121 DESAIHTIHAWCQRMLFQHAFDSLSLFDLTLEPGDDDLLEEAVWDFWRTNFYPRDVETLQ 180 Query: 182 VVFET--WKGPQALLRDINRYLQGEAP-------VIKAPPPDDETLASRHAQIVARIDTV 232 + + P LL+ + + G + P + L R + I Sbjct: 181 ALGQATGLTTPADLLKKVRPLMAGINNADIDAGGLESVPLDPFQMLEQRRSAIEKARRVW 240 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 + +++A+ + ++ ++ ++ WI + +W + + LEKFS Sbjct: 241 QAGFKEAIDLVQKARADKTLNNNRYRPASLDTWIADMDSWVNGQGDLPTD-TVLEKFSAT 299 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSI--RDLVITRALAEIRETVAREKRRRGELG 350 L T G P HP F+A+D+L S+ + + EI + V K R +G Sbjct: 300 GLAQGTSKKGTPPAHPAFDALDRLNDSLGSLDVKQALFAHGAREINDRVMAAKARLSRMG 359 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 F+D+++RL AL LA IR +FPVAMIDEFQDTDP QY +F I+ Q ++ L Sbjct: 360 FNDLITRLGQALA-RPDTCLAQLIRAQFPVAMIDEFQDTDPVQYTLFNTIYLDQEQSGLF 418 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTD---- 465 +IGDPKQAIYAFRGADI TY++AR + YTLD N+RS+ GMV +VN++FS Sbjct: 419 MIGDPKQAIYAFRGADIHTYLRARQDAGDRLYTLDKNFRSSSGMVAAVNQIFSHGAKFPL 478 Query: 466 DAFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ---STMAQV 521 AF+F+E IPF PV + +++ F+ +G+ M +W M+ G STMA Sbjct: 479 GAFLFKEMIPFDPVLAQDRDET--FMVEGQAAVPMTLWQMQDGPVAKGGPDGYLSTMAGA 536 Query: 522 CAAQIRDWLQAGQR---GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 A+++ L GQ+ G L P+ SDI+VLVR EA +R AL L + S Sbjct: 537 AASEMVRLLNLGQQRPQGAGFLQKDGSFVPLVPSDIAVLVRDVNEARHIRSALDLRGVRS 596 Query: 579 VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW 638 VYLS+R+SVFE+ EA ++++L+A P E +R+ALAT ++ L+ +ETLNNDE AW Sbjct: 597 VYLSDRESVFESQEAVSLVYILKACFDPTNERAVRAALATPLLDLSLKTLETLNNDESAW 656 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG 698 + V +F +++ WR +GV+PM+RAL+ ++ LL+T GER+LT++LH+ E+LQ Sbjct: 657 ETAVIQFKSFQKTWRTKGVLPMVRALVFEFDVGARLLSTLAGERKLTNLLHLGEILQAES 716 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 L+ E ++RWL I P + +RLESD+ LV+++TIHKSKGLEYPLV+LPF Sbjct: 717 AALDGEQGVIRWLGDQIARPQISVEDDILRLESDQRLVRVITIHKSKGLEYPLVFLPFAC 776 Query: 759 NFRV----QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 + R L +N ++++ A+ ERLAE+LR+LYVALTRS + C Sbjct: 777 SARKLTQANASVVTAHDPDGTPFLVVNPDAKALEAADQERLAEELRMLYVALTRSCFACF 836 Query: 815 LGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEAL--CDDDIAWQTAQT 872 LG+ + + + T +H+SA+G L+ + A L + L D I Sbjct: 837 LGIGVMGKTLKSGEVTT-LHESAMGYLMAGQTMVETAQLPGLLNELKGGSDAIVITPLPP 895 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP-RLDVDAAGV 931 + + + L A+ +NWR+TSYSG+ + ++ +DV+ Sbjct: 896 PGKEMFVPGSELPSLLPARLFNGTIPNNWRITSYSGILANAAMPEKGVVAFPVDVEVPDS 955 Query: 932 ASVVE------------------------------EPTLTPHQFPRGASPGTFLHSLFED 961 AS + P L+ H FPRG PGTFLH L E Sbjct: 956 ASQDQLQEAQLQEAQIQEEQIQEQQIQMAMVSNIHSPALSIHGFPRGPEPGTFLHDLLEW 1015 Query: 962 --------LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG--VSLSQ 1011 + +P+ + ++ G+E W VL +W+ + PL G +L+ Sbjct: 1016 AAIQGFDRVAQDRPLALDHIQRACVARGWEP-WTGVLVDWLMDFVTVPLTVDGVTFTLAD 1074 Query: 1012 LSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR 1071 L + + EMEF S + ++D L+ P L ++ GM+KGFIDLVF Sbjct: 1075 LGKQQCRPEMEFMF-ASHGVAVGKVDQLVCSHVLPGNLRPVLNPNRLNGMVKGFIDLVFC 1133 Query: 1072 HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDY 1131 + RYY+LDYKSN LG+++ AY AM AM HRYDLQY LYTLALHR L+ R+ DYDY Sbjct: 1134 FKDRYYILDYKSNHLGDEAGAYDAAAMNQAMLGHRYDLQYVLYTLALHRLLKSRVVDYDY 1193 Query: 1132 EHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 + GG +YLFLRGV+ QG+Y RP LI +D F G Sbjct: 1194 DRDLGGAVYLFLRGVN--STGQGVYFDRPPKDLIETLDRFFQGG 1235 >UniRef50_Q1LST8 Exodeoxyribonuclease V, beta subunit n=2 Tax=Gammaproteobacteria RepID=Q1LST8_BAUCH Length = 1183 Score = 970 bits (2509), Expect = 0.0, Method: Composition-based stats. Identities = 531/1186 (44%), Positives = 746/1186 (62%), Gaps = 22/1186 (1%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 ++P+ L L+ LIEASAGTGKT+T+ LYLRLLLG+GG +A+ RPL++ E+L+VTFTEA Sbjct: 1 MNPITLQLKQHCLIEASAGTGKTYTLVILYLRLLLGIGGLSAYHRPLSITEILLVTFTEA 60 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A E+R RI IH LRI+C+ +++PL LL +I + A LL AE+Q++EAA+F Sbjct: 61 AIKEIRSRIHDTIHRLRISCVCGYSNDPLLAALLLQIKNIPLAINQLLAAEQQINEAAIF 120 Query: 128 TIHGFCQRMLNLNA--FESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 TIHGFCQRMLN+N ES ++QL+ED++ L Q DFWRR+C PLP +A++V + Sbjct: 121 TIHGFCQRMLNINYNLLESSFWSQKQLLEDDTHLLQQVVTDFWRRYCSPLPDSVARIVQQ 180 Query: 186 TWKGPQALLRDINRYLQG---EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 W GP LL + YL E+ ++ ++ H +I+ ID +K+QW + + Sbjct: 181 YWTGPDQLLTSLLPYLHNMHIESIIVSDQLITTASIIDHHNKIINYIDALKKQWLLFMQQ 240 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 I+ I+ + W KIS WA + T Y +P LE+ + T Sbjct: 241 WSIFIQYIPING--ICKKTALNWKKKISIWANKLTVDYAIPIELERLNYLLCNTNTLPVE 298 Query: 303 ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362 E L S+++ ++ A+ EI ++ +EK + + F D+L D+ L Sbjct: 299 IRDHLFFKELAKFYLNYQFSLQEFILRLAINEIIPSLEKEKNLKNIMSFHDLLKDFDNIL 358 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF 422 S GE+ A IR+R+PVAMIDEFQD DP QYRIF+R++ T LLLIGDPKQAIY+F Sbjct: 359 TSNHGEIFANFIRSRYPVAMIDEFQDIDPLQYRIFKRLYDLTKNTVLLLIGDPKQAIYSF 418 Query: 423 RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAG 482 RGADIFTY+ AR V YTLDTNWRSAPGMVN+VN+LF F+F EIPF P ++ Sbjct: 419 RGADIFTYIHARKLVKECYTLDTNWRSAPGMVNAVNQLFQSLPIPFIFSEIPFKPAVASA 478 Query: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 N L+F+ + QPAM +WL + GV YQ +MA CAA I WL++ G A L + Sbjct: 479 FNSNLQFMLDEKAQPAMLLWLQASNNVGVAHYQKSMAHQCAATISYWLRSSNAGLAWLES 538 Query: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQA 602 + ++ASDI VLVR+R EAA + DA+T L I SVY+S+ SVF+T+EA+E++ LLQA Sbjct: 539 NKGRKQLQASDIVVLVRNRDEAALINDAMTALSIKSVYVSSFSSVFQTIEAREIMCLLQA 598 Query: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLR 662 ++ PE+ N LR ALATS++G IE+ N +E + +F+ Y +IW++ G++PMLR Sbjct: 599 IVEPEQHNKLRCALATSLLGGEVDVIESFNINEKINNKWRGKFNLYHKIWQQHGILPMLR 658 Query: 663 ALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA 722 ++ +IAE L++ GER +T++LH+ ELLQ+A Q ++E+ALVRWLS I +P+ Sbjct: 659 HIIIENHIAEFWLSSYSGERCITNVLHLGELLQQASVQFDNEYALVRWLSVKITDPNDKD 718 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNA 782 +QQ+ LE+ +LV I+TIHKSKGLE+PLV LPF +NFR ++ + +HDR + A LDL+ Sbjct: 719 KNQQLWLENHHNLVHIITIHKSKGLEFPLVLLPFASNFRSKKHSMFHDRQLYPAGLDLSI 778 Query: 783 APESVDL-AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 AP S++L + +RLAEDLRLLYVA+TRS++HC +G+AP+ +D+H SALG L Sbjct: 779 APNSMNLTEDDKRLAEDLRLLYVAVTRSIYHCCIGIAPIYHGYSKITSTSDLHLSALGYL 838 Query: 842 LQKGEPQDAAGLRTCIEAL---CDDDIAWQTAQTGDNQPWQVN-DVSTAELNAKTLQRLP 897 +Q+G +A LR+ +E L + DI+ V+ V+ EL+A+ L Sbjct: 839 IQQGNAGNAIFLRSQLEKLLVRAEGDISLCEINKSPLSHTIVSIPVANLELSARHLPINL 898 Query: 898 GDNWRVTSYSGLQQRGHGIA--------QDLMPRLDVDAAGVASVVEEPTLTPHQFPRGA 949 D W++TSY+ LQ+ + Q L ++VD + E LT H FP G Sbjct: 899 FDRWQITSYTELQKNTAVTSIRFNDKAQQQLYSNINVDLLNHQQYITE--LTQHTFPCGK 956 Query: 950 SPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSL 1009 G FLHS+FE +DF++ +D + +L + W VL +W+ V+ APLN + +SL Sbjct: 957 LAGKFLHSIFETIDFSKQIDSTQLSLELTKHNIDQCWLLVLQQWLHKVITAPLNNSNLSL 1016 Query: 1010 SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLV 1069 S+L RN E+ F LPI+ L A +D L + +DPLS CP L+F V+GML G IDLV Sbjct: 1017 SKLDHRNYCTELPFLLPINTTLRAQDMDKLCKNYDPLSLRCPTLDFTPVKGMLTGVIDLV 1076 Query: 1070 FRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY 1129 F + RYYLLDYKSN LGEDSSAYT++A+ AM HRY+LQYQLYTLALHRY+RHR+ +Y Sbjct: 1077 FCWQNRYYLLDYKSNRLGEDSSAYTKEAIEQAMIQHRYELQYQLYTLALHRYMRHRLVNY 1136 Query: 1130 DYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 DY+ FGG+ YLF+RG++ P + IYT RP+ LI +D+MF G Sbjct: 1137 DYQRDFGGIFYLFIRGIELNLPIESIYTYRPDISLINKLDQMFNGK 1182 >UniRef50_B0TRK3 Exodeoxyribonuclease V, beta subunit n=4 Tax=Shewanella RepID=B0TRK3_SHEHH Length = 1240 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 462/1211 (38%), Positives = 650/1211 (53%), Gaps = 61/1211 (5%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + V E LD L LP G RLIEASAGTGKTFTIA LY+RLLLG G PLT E++LV Sbjct: 20 TIVTEPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGHG----IESPLTCEQILV 75 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLLAER 119 VTFT AAT ELR RIR I + D+ L L D+ A A + L LA + Sbjct: 76 VTFTNAATGELRDRIRKKIQLAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALK 135 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 +DEAA+FTIHGFCQR+L AFES +LFE + D+S + A DFWR CYPL + Sbjct: 136 SLDEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWREKCYPLNGSL 195 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 A V+ + P AL R + L V P + L + Q ++R K W Sbjct: 196 ADVIQAKFSEPDALSRQLRPLLGASNAVAAPTPEAFDKLEANLTQSLSRF---KLIWPTE 252 Query: 240 VGELDALIESSGIDRRKFNRSN-----QAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + + ++ + ++ +F + AK +D I W ++LE S L Sbjct: 253 REQTETMLHALPLNGARFGKKADGYPKLAKMLDDIDNWV-TFGQGLPPAKALEALSLNSL 311 Query: 295 EDRTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 + GGE P + P+ +++L ++ + A I + A++K R L Sbjct: 312 K--LNKGGEIPSAEQAPMLAHMERLTQLTSNLIPSFLYCARDGIAKRFAKQKLERNLLTP 369 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH--------- 402 DD+L L AL + + LA++I RFPVA+IDEFQDTDP Q+ IF I+ Sbjct: 370 DDLLLTLAGALSASTDNSLASSISQRFPVALIDEFQDTDPLQFEIFNTIYQSTASDSSPA 429 Query: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 Q + +LL+IGDPKQAIYAFRGADI TY++AR + HY LDTN+RS MV++VN +FS Sbjct: 430 QQDKLSLLMIGDPKQAIYAFRGADIHTYIQAREQTAKHYNLDTNYRSNRQMVDAVNGIFS 489 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC---GVGDYQSTMA 519 D F+ + IPF VK++ + E + A+++ ++ ES + +A Sbjct: 490 HRADPFISQSIPFEAVKASSFADKKSLKEQVEDKSALRLRVLSEESEKGLNKTTARQLLA 549 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 A +I L Q+ + + +P++A DI+VLVR R EA ++ AL+L +I +V Sbjct: 550 DDVANEIALLLTDAQQNLCAIGD----KPLKAKDIAVLVRDRHEANVIKSALSLRQIGAV 605 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 +LS RDSVF TLEA+E+ +L A+ P+ E LRSALATS++G +A I N DE + Sbjct: 606 FLS-RDSVFNTLEARELTLVLYAMADPKDERALRSALATSLLGYSAEAIHHFNQDEDSRQ 664 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 ++E+F Q+W KRG+MP L L S I E LL GERRLTD H+ ELLQ+ T Sbjct: 665 TLLEQFAQLHQVWLKRGIMPALLTLASQTQIIERLLNAEEGERRLTDFRHLGELLQQKAT 724 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF--I 757 +L+ AL+ W Q ++E + Q+RLES+++LVQIVTIHKSKGLEYP+ ++PF + Sbjct: 725 ELDGSSALINWFEQALIENQPS-EEAQLRLESEQNLVQIVTIHKSKGLEYPICFVPFVSL 783 Query: 758 TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 + ++ + + + + D+ + E + + E LAEDLRLLYVALTR V C L + Sbjct: 784 SRDNRKKPSPMLYHDNNKLIWDIEQSEEGWERQKRETLAEDLRLLYVALTRPVLKCYLYI 843 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR----TCIEALCDDDIAWQTAQTG 873 A R + +H++A+G LL + ++A D I+ + Sbjct: 844 ANHSRFTKKSGMSSQLHETAIGYLLGIEDKACDYERLLTQAKRLQASTPDAISLKELAPA 903 Query: 874 --------DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR-GHGIAQDLMPRL 924 + ++ K L+R WRV SYSGL + H Sbjct: 904 GSDVALSAEPIILARDESIETHFAPKVLKRPHLTPWRVGSYSGLVKHLAHEKVLPGADDE 963 Query: 925 DVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGF 982 V + T + F RGA+ G+F+H + E +DFTQ + + G Sbjct: 964 VFPEVDVIIDEVDNTPSRFTFERGANAGSFMHLVLELIDFTQAETDLDEQLPIAMSKYGI 1023 Query: 983 ESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 + W VL W +L APL ++ + L+QL + K VEMEFYLPIS L A +L+ L+ Sbjct: 1024 DETWVEVLKLWYIDLLHAPLATDSSLKLAQLMPQQKLVEMEFYLPISA-LNADKLNALLT 1082 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 +F L F ++GMLKGFIDL F H +Y++ DYKSN LG+D S Y M A Sbjct: 1083 EFG----YSAGLSFDDLQGMLKGFIDLTFEHNNQYFIADYKSNHLGDDLSQYHYSNMQQA 1138 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 +++HRYDLQY +YTLALHRYL R+A+YDY+ H GG YLFLRG+ PQ G+Y +P Sbjct: 1139 IRSHRYDLQYIIYTLALHRYLSLRMANYDYDLHMGGSFYLFLRGMSVNSPQSGVYYDKPP 1198 Query: 1162 AGLIALMDEMF 1172 LI +D +F Sbjct: 1199 KLLIEKLDALF 1209 >UniRef50_Q080D8 Exodeoxyribonuclease V, beta subunit n=4 Tax=Gammaproteobacteria RepID=Q080D8_SHEFN Length = 1276 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 459/1279 (35%), Positives = 668/1279 (52%), Gaps = 121/1279 (9%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ L LP G LIEASAGTGKT+TI+ LYLRLLLG GG PL+ E++LVVTFT Sbjct: 8 PLNALTLPFSGSSLIEASAGTGKTYTISGLYLRLLLGHGG----KAPLSCEQILVVTFTN 63 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEI--DDKAQAAQWLLLAERQMDEA 124 AAT ELR RIR I+ L ++ E+L ++ D++ A + L LA + +DEA Sbjct: 64 AATEELRDRIRKRINLAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEA 123 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIH FCQR+L+ AFES +LFE + D+S + A DFWR CYPLP +AQ + Sbjct: 124 AIFTIHAFCQRVLSDMAFESSLLFESEFTLDDSEFLHHAVRDFWREVCYPLPPFLAQAIS 183 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 + + P L + + L V+ P +TL + +Q ++R + W+ Sbjct: 184 DVFAEPDVLAQKLRPLLGASQAVLSKQPLAFKTLQQQLSQSISRFTLL---WQSLHDSTL 240 Query: 245 ALIESSGIDRRKFNRSN-----QAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 L++S ++ ++F + ++ D IS W + + + ++ Sbjct: 241 ELLQSLPLNGQRFGKGADGYPKLSQLFDSISNWVKFGQGLPPIKALEQLALSELKLNKGG 300 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 PL + I++LL + + RA IR+ A +K++R + DD+L L Sbjct: 301 VIPSADEAPLLDHIERLLELINQLIPSFLVRAREGIRQRFAGQKQQRNLMTPDDLLLSLA 360 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH----------------- 402 A S++ LA AI RFPVA+IDEFQDTDP Q+ IF +++ Sbjct: 361 MA-LSQNPITLAHAIAKRFPVALIDEFQDTDPLQFTIFNQVYQQPLASQLDLTADARVNS 419 Query: 403 --------------------HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 ++ +LL+IGDPKQAIYAFRGADI+TY+ AR + AHY Sbjct: 420 PDDDSKSNDDNGNDNIGNDANKGRLSLLMIGDPKQAIYAFRGADIYTYIAARQQTQAHYN 479 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 LDTN+RS+ +VN VN+LFSQ D F+ + IP+ VK+ A+++ Sbjct: 480 LDTNYRSSTQLVNGVNQLFSQHQDPFISQAIPYDIVKTPSSAANKHLSEATTNPTALRIR 539 Query: 503 LMEGESC---GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG--DDARPVRASDISVL 557 L+ + + +A A++I+ L Q+G + N +A+P+ A DI++L Sbjct: 540 LLAEDDVNGLNKTTARQRLAADAASEIKRLLTEAQQGLCKVNNSIEQEAKPLIAKDIAIL 599 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 VR R EAA ++ L+ +I +V+LS RDSVF T+EA+EM LL A+ TP+ E +R+ALA Sbjct: 600 VRDRNEAAVMKAELSARKIGAVFLS-RDSVFNTIEAREMAILLYALATPKDERAIRAALA 658 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 T ++G NA I N DE V+++F + Q+W++RGVMP L S + L+ Sbjct: 659 TELVGFNAQRIHQFNQDEEQRQQVLDQFTHWHQLWQQRGVMPALLNFASETKLIHRYLSQ 718 Query: 678 ------------------------------------AGGERRLTDILHISELLQEAGTQL 701 A GERRLTD H++ELLQ+ T+L Sbjct: 719 SVTADINNDSTYSSNNDNNSDNSFNDADDDNAADLKASGERRLTDFRHLAELLQQKATEL 778 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF--ITN 759 + AL+ W Q ++ ++ QQ+RLES+++LVQIVTIHKSKGLEYP+ ++PF + Sbjct: 779 DGSSALINWYEQQLI-GNNGGDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLAR 837 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 + A + + + D++A E + + E LAEDLRLLYVALTR V+ C L +A Sbjct: 838 GNKKRPAPMMYHKNEQLIWDIDATDEGWEQLKQETLAEDLRLLYVALTRPVYVCYLYIAN 897 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC---IEALCDDDIAWQTAQTGDNQ 876 R+ + +H++ +G LL + + L A D+ Sbjct: 898 QSRQ-LKAGISSQLHETGIGYLLGITDKKTDFALIQAKVNAIATLPAMSVECLGNDIDDS 956 Query: 877 PWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR------GHGIAQDLMPRLDVDAAG 930 + L AK + R+ WRV SYSGL + G + + Sbjct: 957 VLADIHDNNDPLVAKKVTRVQSLAWRVGSYSGLVKHLPHERVAPGADDEDFTDELIQLQL 1016 Query: 931 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQ-WE 987 + EP L F RGA+ G+F+H + E DFTQ + + ++ GF+ W+ Sbjct: 1017 QDELTSEPELDRFTFERGANAGSFMHLVLELFDFTQANTELTPALTKAMKQYGFDEALWQ 1076 Query: 988 PVLTEWITAVLQAPL------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 L W +L APL +T ++LSQL + K VEMEFYLPIS L ASQL+ +++ Sbjct: 1077 QPLMTWYQQILVAPLFIEPSSEDTSLTLSQLGMKQKMVEMEFYLPIS-TLQASQLNHILQ 1135 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 Q L+F ++GMLKGFIDL F H+G++Y+ DYKSN LG++ S YT AMA A Sbjct: 1136 QHG----YVAGLDFDTLKGMLKGFIDLTFEHKGQFYIADYKSNHLGDNYSDYTHSAMAKA 1191 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 + AHRY+LQY LYTLALHRYL R+ +Y+Y+ H GG YLFLRG+ EHP G++ +P Sbjct: 1192 IDAHRYNLQYILYTLALHRYLSLRLPNYNYQQHIGGCYYLFLRGMHPEHPGAGVFYDKPP 1251 Query: 1162 AGLIALMDEMFAGMTLEEA 1180 LI +D +F G T A Sbjct: 1252 QALIEQLDRLFTGNTDNRA 1270 >UniRef50_A4CBT2 Exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CBT2_9GAMM Length = 1183 Score = 945 bits (2444), Expect = 0.0, Method: Composition-based stats. Identities = 443/1198 (36%), Positives = 628/1198 (52%), Gaps = 42/1198 (3%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + L+P+ +PL+G LIEASAGTGKT+TI ALYLR LLGL + PLTVE++LVVTF Sbjct: 1 MQGLNPITMPLKGVSLIEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTF 60 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 TEAATAE++ R+R I R A + D+ + + +L E+ + A L A + MD+A Sbjct: 61 TEAATAEIKDRVRKRIILARDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDA 120 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIHGFCQRML +AFESG+ F I D+S L +A D+WR Y L +E V Sbjct: 121 AIFTIHGFCQRMLKQHAFESGVAFNLTFIMDQSELLTEALKDYWRTFVYGLTKERTAHVL 180 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 + P+ L + + L I+ DE Q ++ + K + + Sbjct: 181 AYFPAPERLYKKVAALLSRSGAKIQPQINLDEVW-QWQEQYLSLLARFKIDYLKSDFAAA 239 Query: 245 ALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE-DRTKAGGE 303 L + N + + + FL+ + K GG+ Sbjct: 240 ILNSDLKKTKPAAKAPNLELLLAFCQSEQTVFEFGSDKKSFEIWAADNFLDPEMYKKGGK 299 Query: 304 TPRHPLFEAIDQLLAEPLSI----RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 T HPL + +L + + +A + ++ +K+ + + DD+L++L Sbjct: 300 TFSHPLCQVFTELSELQQKLTFGMPIAIAQQATKWVSAALSTKKQEQRLISPDDLLTQLH 359 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL S+ G+ LA+ I FPVAMIDEFQDTDP QY IF +I+ ++ A +IGDPKQAI Sbjct: 360 HALFSDGGDTLASQIAADFPVAMIDEFQDTDPIQYGIFSQIF-NRESCAFTMIGDPKQAI 418 Query: 420 YAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-REIPFI 476 Y FRGADIFTY+ A+ +V YTL NWRS+ G+VNSVN LF+ D++F+F ++IPF+ Sbjct: 419 YGFRGADIFTYINAKHQVSTEQQYTLGKNWRSSTGIVNSVNALFNHHDNSFIFNQDIPFL 478 Query: 477 PVKSAGKNQALRFVFKGETQPAMKMWLMEGESC--GVGDYQSTMAQVCAAQIRDWLQAGQ 534 V++ GK G+ A + ++E ++ +A + +I LQ Q Sbjct: 479 AVEAQGKTAEQALYLDGKAVTAFEFCVLEHDAPVTSKAYAMPRLAAHFSDKIATLLQQAQ 538 Query: 535 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 G A + + V+A+DI VLVR R EA+ +++AL+ I SVYLS RD V ++ A Sbjct: 539 AGRATI----GSHAVQAADICVLVRDRNEASFIKEALSKQGIASVYLS-RDGVLQSPLAL 593 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRK 654 +L L A+ E+ R LA + LN I L +E W + F IW K Sbjct: 594 HLLNFLTALHGQYDESAYRGVLAGPLFNLNYQQIYQLAENEQTWQQYLALFSELSDIWYK 653 Query: 655 RGVMPMLRALMSARNIAENLLAT-AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713 +G M ML L+ N+A A ER LTD H++E+LQ+ +LE LVRW +Q Sbjct: 654 KGAMAMLELLLMRNNLAGLWQAMGLPVERWLTDFRHLAEILQQKQLELEGSLRLVRWFAQ 713 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 773 +I+ D++ S Q+RLESD LV+IVT+H SKGLEYPLV++PF FR + YH Sbjct: 714 NII--DTSKESAQLRLESDAKLVKIVTMHASKGLEYPLVFMPFAVGFREASEQIYHQD-- 769 Query: 774 FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 833 E V +L S LAE ERLAEDLRLLYVALTR V C +G+ + + Sbjct: 770 GELVYNLIKDDASQQLAEKERLAEDLRLLYVALTRPVHQCFIGMYNIAVGNSKS---MTI 826 Query: 834 HQSALGRLLQKGE----PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN 889 ++ALG LL G+ D L A D+A D++ ++++ Sbjct: 827 QRTALGHLLFAGQTLTSATDWHQLLNAFAAAHSADMAVSYFAETDSKISLSDELTVPNYE 886 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGA 949 K NWR+TS+S L + + L FPRGA Sbjct: 887 RKLFTGKIERNWRLTSFSALSYNQASEHITPGFEDESHELDWLGEEQSNELNQFSFPRGA 946 Query: 950 SPGTFLHSLFEDLDFTQPVDP---------NWVREKLELGGFESQWEPVLTEWITAVLQA 1000 G+ LH++FE++DF P V ++L+ E W+ V +WI VL Sbjct: 947 RAGSCLHAIFEEIDFQHPDTHPSDPSKNLGAVVEQQLQKYSIEPHWQLVAEQWIKRVLST 1006 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 PL+ G+SL++L A+ +EMEFYLP L A+ ++ ++ S L+F ++G Sbjct: 1007 PLDADGLSLNKLGAQQCLIEMEFYLPFER-LDATGINQVLDSVASESVFKHNLKFETIQG 1065 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 MLKGFIDL+F +G+YY+LDYKSN LGE +S Y Q M MQ+H Y LQY LY++ALHR Sbjct: 1066 MLKGFIDLIFEWQGKYYVLDYKSNHLGELASDYQQSNMEEVMQSHHYHLQYLLYSVALHR 1125 Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 L+ R+ADYD E H GGV YLFLRG+ +GIY + +I +D MF TLE Sbjct: 1126 LLKTRLADYDIEQHLGGVYYLFLRGM---GEGEGIYFKKIAKEIILQLDRMFEQATLE 1180 >UniRef50_A6W0A9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0A9_MARMS Length = 1240 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 475/1229 (38%), Positives = 699/1229 (56%), Gaps = 65/1229 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 ++ V E L+ L PL G+RLIEASAGTGKT+TIA LYLRLL+ G + +PLTV+++L Sbjct: 13 LNMVPEPLNALTFPLFGKRLIEASAGTGKTYTIANLYLRLLVPTGQAGDLDKPLTVDQIL 72 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQA--AQWLLLAE 118 VVTFTEAATAEL+ RIR I R A L+ + + L ++ D+ +A + LL AE Sbjct: 73 VVTFTEAATAELKARIRGRIRAARKALLQGESSDVFLADWLVQMSDEQRAGAIEKLLYAE 132 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 +QMDEAAVFTIHGFCQRML+ NAFES MLF+Q + DE A D WR YP+ Sbjct: 133 KQMDEAAVFTIHGFCQRMLSQNAFESRMLFQQTIETDELAPLSMAVKDVWRSVFYPMDDT 192 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 A ++ W P ALL+D+ I P D S +Q + V+ W Sbjct: 193 KAALIQPIWSNPDALLKDLYLLNNQPDAKIAVPDYD---WESALSQAQETMMAVRAMWLA 249 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 ++ +E SGI +R F R + +K I ++ WA + ++L +SLEKF R Sbjct: 250 QSQDIIDALERSGI-KRTFWRKDPSKDIQAMTQWAN--STRFELDKSLEKFDTNEHASRL 306 Query: 299 KAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEIRETVAREKRRRGELGFDDML 355 GG+ P H F + L + ++ +++T+ + +E + R KR L F D+L Sbjct: 307 SKGGDLPAHEFFALVLALRESFPDAGRLKAVLLTQLWQQTQERMKRWKRSTQSLTFTDLL 366 Query: 356 SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH----HQPETALLL 411 + LD AL + LA IR +P+A+IDEFQDTD QYRIF I+ Q L++ Sbjct: 367 TSLDVALAQDEAGKLAERIRHLYPIALIDEFQDTDAVQYRIFSTIYAPAQVDQNALGLIM 426 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 IGDPKQAIYAFRGADI+TY+ A+ V + Y+L TN+RS+ M+ SVN LF+ + F Sbjct: 427 IGDPKQAIYAFRGADIYTYLAAKKRVDSVYSLATNYRSSAAMIRSVNGLFTTQAEPFRVT 486 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMK-MWLMEGESCGVGDYQSTMAQVCAAQIRDWL 530 IPF+ V+ G F +G+TQ A++ ++ E +Y+ TMA+ CAA + + L Sbjct: 487 GIPFVEVQDRGIASG--FSRQGQTQAALQFLYQRSDEPVSAKEYRQTMAESCAAHLHELL 544 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 GQ+GEAL+ D + VR D+++LV + +A ++DAL I SVYLS++ SVFET Sbjct: 545 LEGQQGEALI----DGKGVRPKDVALLVTNFSQANALKDALRQRGIASVYLSDKGSVFET 600 Query: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ 650 +EA+E+L +L A+++ +E+ LRSALATS++ + D++TLN+D+ ++ + F Y + Sbjct: 601 VEARELLIVLTAILSNGQESKLRSALATSLVDWSLEDLDTLNHDDVVYEKWGQAFRDYLE 660 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 +W K+G++PMLR M ++A N+L+ GGERRLTD LH++E LQ+ +L+S+ ++R+ Sbjct: 661 LWDKQGLLPMLREFMQDVSLAANILSHTGGERRLTDFLHLTEKLQQKSLELDSKEGVLRY 720 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF-ITNFRVQEQAFYH 769 L I P+ N+ Q++RLE+D LV+IVTIHKSKGLEYP+V+LPF +T +R Q+ + + Sbjct: 721 LRLAIQNPNGNSDEQKIRLETDAELVRIVTIHKSKGLEYPIVYLPFALTPYRDQDSSALY 780 Query: 770 DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 + + ++ +L + E A ++RL YVALTRS C +G + + +G Sbjct: 781 HDAQQQLWIAIDPDEAQTELHKEELYAAEIRLAYVALTRSKEACFIGSMEVGKSSNKTRG 840 Query: 830 D-TDVHQSALGRLLQKGEPQDAAGLRTCIEALCD--DDIAWQTAQTGDNQPWQVN----- 881 +DVH S +G L+ +GE +A L +E LC+ D Q D Sbjct: 841 AVSDVHLSGVGALIGEGESLEAGDLYPSLERLCERYQDGQMQLLDLPDEPQRLPRFKMAA 900 Query: 882 ----DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDV----------- 926 E +A+ +W V SYS L + +P LD Sbjct: 901 FNKVQDELIEPHAREFTGRVERDWWVGSYSSLVVEDKERHDESVPGLDEMTRFVDPLLDN 960 Query: 927 ---DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE------------DLDFTQPVDPN 971 + + +EP FP+GA PGTFLH E D + Sbjct: 961 MEVPESPLELAQKEPEKNRFTFPKGAKPGTFLHDTLEGKALHDVSANPSFKDLLKTSHHK 1020 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + E GF+ W+ VL+EW+ ++ L G+SL L + EMEF++P++ + Sbjct: 1021 LMANFYERQGFDE-WQDVLSEWLPDIVNTEL-MAGMSLGSLVPSACRKEMEFFIPVTG-M 1077 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 A QLD + R+ D +S P ++ ++GMLKGFIDL+F ++GRYY+LDYKSN+LG+D + Sbjct: 1078 NALQLDRISREHDGVSKVAPMIQDRPLKGMLKGFIDLLFEYQGRYYVLDYKSNYLGDDFA 1137 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 Y + + A+ HRYDLQYQLYTLALHR L+ R+ +YDY H GGV+YLFLRG+ E Sbjct: 1138 DYEPEKLVHAIAEHRYDLQYQLYTLALHRLLKQRLPNYDYNKHVGGVVYLFLRGMQPEQ- 1196 Query: 1152 QQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 Q GI+ +R + +D +F+G +L++A Sbjct: 1197 QTGIFQSRLTLEHVNALDALFSGDSLDKA 1225 >UniRef50_A4XTT1 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Gammaproteobacteria RepID=A4XTT1_PSEMY Length = 1209 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 481/1225 (39%), Positives = 656/1225 (53%), Gaps = 63/1225 (5%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + L L PL G RLIEASAGTGKTFTI+ALYLRL+LG GG AAF PL ++LV Sbjct: 1 MNQQRPL-ALTFPLHGSRLIEASAGTGKTFTISALYLRLILGHGGDAAFREPLLPPQILV 59 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLLAER 119 VTFT+AAT ELR RIR+ + E + + L L + + A+ L LA + Sbjct: 60 VTFTDAATRELRDRIRARLVEAATVFRGDAQGDDLLRELRSDFAQTQWDECARRLELAAQ 119 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 MDEAAV TIHG+CQRML +AF+SG LF Q L D S L + D+WR+HCYPL Sbjct: 120 WMDEAAVSTIHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHCYPLQGAA 179 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 Q V W P L + L E V A E L Q + +K W Sbjct: 180 LQWVAGVWGTPAGLGSRLRPLLGEEGEV--ATQALGELLDGALQQREQALAELKAPWLTW 237 Query: 240 VGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 EL L++++ +D +K W+ K+ WA E L + + L Sbjct: 238 ADELQLLLDAAVAAKQVDGKKLQARFYNPWLAKLREWAGGEEPRLDLGTGFIRLTPEGLA 297 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLSIRD---LVITRALAEIRETVAREKRRRGELGFD 352 + K GE P HP +A+ L A+ ++ D + A A +R+ EKR+R E+GFD Sbjct: 298 EAWK--GEAPAHPALKAMALLKAQLDALPDPADAALRHAAAWVRQRFDWEKRQRAEMGFD 355 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA---L 409 DML RLD+AL+ +G LA IR +FPVA+IDEFQDTDP QYRIF ++ + L Sbjct: 356 DMLVRLDAALQGSNGARLAEVIRRQFPVALIDEFQDTDPLQYRIFDTLYEVEANRGDCGL 415 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEV-HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 +IGDPKQAIY+FRGADI TY++AR HY L+ N+RS+ MV++VN +F + + Sbjct: 416 FMIGDPKQAIYSFRGADIHTYLRARRATLGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRD 475 Query: 469 MFR-------EIPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEGESCGVGDYQSTMAQ 520 ++PFI V + G+ + +G+ QPA+ +W L E G Y MA Sbjct: 476 GGEGAFLLRDDLPFIEVGAQGRGEVW--SVEGQAQPALTVWHLASDEPVAKGVYLDAMAA 533 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A++I L GQ G+A + +R SDI+VLVR EA +R L + SVY Sbjct: 534 GAASEIVRLLDLGQCGQAGFIKDGVLSALRPSDIAVLVRDFNEAQAIRGELAARGVRSVY 593 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 LS++DSVF EA+++L L+A P+++ LR+ALA++ +GL ++E LN DE W+ Sbjct: 594 LSDKDSVFAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLALSELEQLNLDERTWER 653 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700 V +F YRQ W+++GV+PMLR L+ + + L+ GER LT++LH++ELLQ+A + Sbjct: 654 RVMQFRDYRQRWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQAAAE 713 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760 L+ E AL+R L + + A Q +RLESD+ LV++VTIHKSKGLEYPLV+LPF+ F Sbjct: 714 LDGELALIRHLGELLTGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFVCAF 773 Query: 761 RVQEQAFYHD-RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 R + L L A +S+ AE ERL EDLRLLYVALTR+ C LGVA Sbjct: 774 RPVDDKKPLQIHDGERRRLVLKADDDSLARAERERLGEDLRLLYVALTRARHACWLGVAD 833 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG-LRTCIEALCDD-DIAWQTAQTGDNQP 877 L G K + +H+SALG LL G P A+G L + D A Q Sbjct: 834 LKIGNGKK---SRLHESALGYLLGGGLPLAASGELVNWLAPFASGLDSAVSPVPPASEQR 890 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL-----------QQRGHGIAQDLMPR--L 924 +++ + + +T R ++W + SYS L + M Sbjct: 891 YRMIEEGQFVPHWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHEDAAPDSPAMQNVID 950 Query: 925 DVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD--------PNWVREK 976 D D + + H+FPRG +PGTFLH L E + + Sbjct: 951 DEDPLLALAPLPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFATLAQDPHRLREALARR 1010 Query: 977 LELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSA-RNKQVEMEFYLPISEPLIASQ 1035 + G +S W L +W+ A+L PL G L+ Q E+EF+ + + Sbjct: 1011 CQRRGLQS-WIDPLQDWLLALLSQPLPLAGADTVVLAQLTQYQPELEFWFE-AREVDVRL 1068 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 LD ++Q + PL + GM KGFIDLVF H+GRYY+ DYKSNWLG D AYT+ Sbjct: 1069 LDQWVQQCELPGVARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSDDGAYTR 1128 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGI 1155 +A+ A+ +HRYDLQY LY LALHR LR R+ DYDY+ H GG +Y+FLR PQQG Sbjct: 1129 EAIEVAIVSHRYDLQYVLYVLALHRQLRLRLPDYDYDRHVGGALYVFLR-----APQQGA 1183 Query: 1156 YTTRPNAGLIALMDEMFAGMTLEEA 1180 Y RP LI +D +F G +E A Sbjct: 1184 YLARPPRELIERLDALFMGEAVEGA 1208 >UniRef50_C0N789 Exodeoxyribonuclease V, beta subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N789_9GAMM Length = 1164 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 414/1199 (34%), Positives = 630/1199 (52%), Gaps = 65/1199 (5%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D + L+G LIEASAGTGKTFT+A LY RL+ + L V+ +LVVT+T A Sbjct: 4 FDAANVELKGVNLIEASAGTGKTFTLAELYCRLIT--------EQQLEVKNILVVTYTRA 55 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 AT ELRGR+R + E R + + + + L LA + DEAA+F Sbjct: 56 ATEELRGRLRKRLVEERQKLSQLDAVD-------------DKVIKRLKLAIQSFDEAAIF 102 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR L AFESG F+ +++ DE ++ DFWRRH A+ + Sbjct: 103 TIHGFCQRALQDFAFESGHAFDVEMVTDEEEIKQAVVDDFWRRHVSAADANFARFLLAQK 162 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 + P+ LL+ + L G+ + P P+ + + +Q A ++KQ W + ++ A++ Sbjct: 163 QTPETLLKAVGN-LPGKPYLTYLPLPEVD-IEKAQSQAEADFVSLKQCWLNYQADIIAVV 220 Query: 248 -ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 ++S + K+ A W+ + ++ET Q+ E L++F++ LE K G P Sbjct: 221 TDNSLLFANKYRSDWVANWLLMLENLLQQETLPQQVFEQLDRFTRERLEPALKKGKTLPD 280 Query: 307 HPLFEAIDQLLAEPLSI-------RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 HP + ++ L + + + +R+ + + K++ FDD+L L Sbjct: 281 HPFWSHAERFLQSHQQLNQCRDIALQQLRMQLANYLRQELPKRKQKLKLQAFDDLLLNLQ 340 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL SE G+VL A IR +F A+IDEFQDTDP QY FR ++ + + +GDPKQAI Sbjct: 341 QALHSEQGDVLVAQIRQQFQAALIDEFQDTDPIQYDCFRTVFADS-GSPVFFVGDPKQAI 399 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 Y+FRGADIFTY+ A+ + LDTNWRS P +V +VN LF Q + F++ +IPF PVK Sbjct: 400 YSFRGADIFTYLDAKQASQREFNLDTNWRSHPLLVGAVNTLFEQVEKPFIYDDIPFYPVK 459 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEG--ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 +A + + K P +W+ + ++ GD +T A A+QI D +Q +GE Sbjct: 460 AARPDTPALTLSKQALPPLEFVWVADDGDKAINKGDMLTTAANSTASQIADLMQQSSQGE 519 Query: 538 ALLMNG-DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 L + D+R + DI+VLVRS +A ++ AL I SV S RD+VF++ +A + Sbjct: 520 VTLTDKEGDSRALNGGDIAVLVRSHSQATAIQQALRQRGINSVQQS-RDNVFKSEQAVML 578 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRG 656 +L AV P + + +ALAT + ALDI L D+ W + F W++ G Sbjct: 579 EQVLLAVAKPGNNSLIATALATPIFAKTALDIYQLQQDDSLWLEQTDLFQSLHDSWQQDG 638 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHI 715 + M R LM +I +L + GER+LT+++H++EL+Q A + + A++ WL+ Sbjct: 639 FIVMFRRLMEQLDIQRRILQQSDGERQLTNLMHLAELVQAYASRRNSTIEAILTWLAGQR 698 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ----AFYHDR 771 + Q+RLESD+ LV+++TIH SKGLEYP+V+ PF+ + +Q F+H Sbjct: 699 QASSAAQDMAQIRLESDEQLVKVITIHTSKGLEYPIVFCPFLWHQGKPKQKPELMFFHRD 758 Query: 772 HSFEAVLDLNA--APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 + +A + E+ +AEAE AEDLRLLYVALTR+ C + K Sbjct: 759 ETNQACVAFGEPGFSEAEPIAEAESRAEDLRLLYVALTRARERCVIIWGAA------KNC 812 Query: 830 DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN 889 + L R L P + A I QT + + V + L+ Sbjct: 813 EDTAMFGLLHRDLDTLNPAQMHSDLAELSAEHPKFIRLQTVNE-EVENAPVKPATEVALS 871 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ---FP 946 A+ + W+++S+SGL + H + + D DA V S + P T H FP Sbjct: 872 AREFKGRILPPWQISSFSGLTRGHH------VEQPDYDADSVLSEWQTPVETRHDRFGFP 925 Query: 947 RGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITAVLQAPLN- 1003 +GA+ GT LHSLFE DF D +++ L G ++ W V+ W+ +V+ +PL+ Sbjct: 926 KGANAGTCLHSLFEHWDFQTTGDEWQQLIQKTLSQYGIDTDWTDVVEHWLPSVVSSPLST 985 Query: 1004 ETGVSLSQLSARNKQVEMEFYLPISE---PLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 E+ ++L+ +S + EM FY P+S+ + + L + + L L F V G Sbjct: 986 ESALTLNCISQDKRLDEMAFYFPVSQLKAQKLKTTLTGFVTEMPVLKTVLNQLNFNDVTG 1045 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 +KGFIDL+F EGR+Y+ DYKSNWLG+ + Y + A+ AM H Y LQY +Y+LALHR Sbjct: 1046 FMKGFIDLIFEFEGRFYIADYKSNWLGDKAEDYDKVALDEAMVTHGYPLQYLIYSLALHR 1105 Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 YL+ R+ DYD E HFGGV YLF+RG+ E Q G+Y +P+A L+ +D + ++ Sbjct: 1106 YLKIRLPDYDPEQHFGGVYYLFIRGMQAEWGQAGVYFDKPSAALLDALDACMQQESGDD 1164 >UniRef50_Q0HJB9 Exodeoxyribonuclease V, beta subunit n=11 Tax=Shewanella RepID=Q0HJB9_SHESM Length = 1274 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 468/1269 (36%), Positives = 666/1269 (52%), Gaps = 114/1269 (8%) Query: 1 MSDVAE--TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEE 58 M+ V+ LDPL LP G RLIEASAGTGKT+TI+ LYLRLLLG G S + L E+ Sbjct: 1 MTKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSES----LNCEQ 56 Query: 59 LLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLL 116 +LVVTFT AAT ELR RIR I L ++P + L ++ + +A A + L Sbjct: 57 ILVVTFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDL 116 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A + +DEAA+FTIHGFCQR+L AFES +LFE D+S + A DFWR CYPLP Sbjct: 117 ALKSLDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLP 176 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 +AQ++ + P L++ + L P LA +Q V R + Sbjct: 177 EYLAQIIASEFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLSQSVQRFKLAWPRG 236 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 RDA+ EL + +G K N K + + LP + E Sbjct: 237 RDALLELLHSLPLNGQRFGK-ASDNYPKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSEL 295 Query: 297 RTKAGGETP---RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDD 353 + GG P PL + ++QL A +I+ + A I E A++K+++ L DD Sbjct: 296 KLNKGGVIPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDD 355 Query: 354 MLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW------------ 401 +L+ L +A+++ L A+ +RFPVA+IDEFQDTDP Q+ IF I+ Sbjct: 356 LLTTLAAAMQANPDT-LPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGVDTQDPA 414 Query: 402 ------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 + +LL+IGDPKQAIYAFRGADI+TY++AR + AHY LDTN+RS+ +V Sbjct: 415 AAEPKPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTEAHYFLDTNYRSSRNLVV 474 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME--GESCGVGD 513 VN LF+Q D F+ + IPF PVK+ A + V A+++ L+ Sbjct: 475 GVNHLFAQHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNSAALRLKLLSEGDTGLNKAS 534 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 + T+A+ AA+I L G+ G P+ A DI++LVR R EAA ++ AL+ Sbjct: 535 ARQTLAEDTAAEITRLLTQAANGQCSTPKG----PLIAKDIAILVRDRNEAAVMKTALSK 590 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 +I +V+LS RDSVFET+EA+EM +L+A+ +P+ E LRSALAT+++G A I N Sbjct: 591 RQIGAVFLS-RDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQ 649 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA--------------- 678 DE ++E F QIW+KRG+MP L +L +A + LL + Sbjct: 650 DEEQRQRLLEHFFELHQIWQKRGIMPALLSLANATQMVARLLHSPILPSTDQAEQDAAAQ 709 Query: 679 ----GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKH 734 GERRLTD H++ELLQ+ T+++ AL+ W Q +++ ++ QQ+RLES+++ Sbjct: 710 LEASNGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLID-NTGTDEQQLRLESEQN 768 Query: 735 LVQIVTIHKSKGLEYPLVWLPFI----TNFRVQEQAFYHD---RHSFEAVLDLNAAPESV 787 LVQIVTIHKSKGLEYP+ ++PF+ N R YH + E V DL E Sbjct: 769 LVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGW 828 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 + A+ E LAEDLRLLYVALTR V+ C L +A R + +H++A+G LL + Sbjct: 829 EQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRM-LKAGLKSQLHETAIGYLLGITDT 887 Query: 848 QD--------AAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD 899 A L +E+ A D + L+A+ + R Sbjct: 888 DCDFSRLQNAAKALVAGLESSPPAISIEVVADNIDANKLHTGGSDSQTLSARKVSRQYRT 947 Query: 900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDA------------------------AGVASVV 935 WRV SYSGL + +V+A Sbjct: 948 PWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAADPLWAAPLWQEALLQEVEPQ 1007 Query: 936 EEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV--DPNWVREKLELGGFESQWEPVLTEW 993 +P L F RGA+ G+F+H + E +DFTQ P + + + G W+P+L +W Sbjct: 1008 AQPLLNRFSFERGANAGSFMHLVLELIDFTQAPIDLPRELPKAMLQYGIAPVWQPILEDW 1067 Query: 994 ITAVLQAPLN---------ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 VLQAPL + L+ L+ ++ VEMEFYLP++ L ++L+ L+ QF Sbjct: 1068 YLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNR-LKDTELNQLLGQFG 1126 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 L+F +++GMLKGFIDL F ++G++Y+ DYKSN LG++ AY A+ A+ Sbjct: 1127 ----YDTELQFEELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAISD 1182 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGL 1164 HRYDLQY LY+L+LHRYL R+ +YDY+ H GG YLFLRG+ ++P GIY +P L Sbjct: 1183 HRYDLQYILYSLSLHRYLAMRLPNYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKAL 1242 Query: 1165 IALMDEMFA 1173 I +D +F Sbjct: 1243 ILALDGLFQ 1251 >UniRef50_P45157 Exodeoxyribonuclease V beta chain n=17 Tax=Haemophilus influenzae RepID=EX5B_HAEIN Length = 1211 Score = 927 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 416/1222 (34%), Positives = 634/1222 (51%), Gaps = 72/1222 (5%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+P+ LPL LIEASAGTGKT+TI +LYLRLLL G F RPL VEE+LVVTFTE Sbjct: 6 PLNPITLPLNQISLIEASAGTGKTYTIGSLYLRLLLKAG-ENNFSRPLNVEEILVVTFTE 64 Query: 67 AATAELRGRIRSNIHEL-------RIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 AT EL+ +IR I + + N + L + + +A L LAE+ Sbjct: 65 MATEELKKKIRERITDAINKLTAFAKTQDKSAFKNDEFLTALCDNLNIFEAIHRLKLAEQ 124 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 MD AA++TIHGFC+RML AF SG+ F +LI+D+S L + +FWR H YPL E Sbjct: 125 NMDLAAIYTIHGFCRRMLMQYAFHSGIHFNLELIKDQSDLLVRFANEFWREHFYPLDFES 184 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVI-----KAPPPDDETLASRHAQIVARIDTVKQ 234 A + P +L + L + V P L ++ +K Sbjct: 185 ANFIATELVSPANVLSLLKADLGKDLQVEIENKQALSVPIQIFLPQYLGGYQKALNELKA 244 Query: 235 QWRDAVGELDALI-----------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP 283 W ++ E+ A+I + ++R+K+ WI+KI+ W+ + Sbjct: 245 FWLESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINT 304 Query: 284 ESLEKFSQRFLED---------RTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRA 331 + F Q +E + K P+F +++ + ++ + L + Sbjct: 305 TLKDYFLQSSIEKNCEESTDKNKDKKPATPFYSPIFADLEKRVNALMTPDLLSKLTLYHY 364 Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 +++ + K E FDD+L L AL+ G+ LA IR ++P AMIDEFQDTD Sbjct: 365 RQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQDAQGDELAEMIRFQYPFAMIDEFQDTDS 424 Query: 392 QQYRIFRRIWHHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRS 449 QQY IF +I+ PE ++IGDPKQAIY FRGADIFTY+KA E + + L N+RS Sbjct: 425 QQYAIFSKIYRDNPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFELTKNYRS 484 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 +V+ VN LF F+++ I F V S ++ LRF G+ +PA + +L E + Sbjct: 485 EKHLVDGVNALFDFPQSPFIYQNIKFTAVDS--RDDHLRFYLNGKVEPAYRFYLTESDKV 542 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 + MA++CA I+ WL++ +A+ N D + ++A++I+VLVR + EAA V++ Sbjct: 543 NKTE----MAKICAISIQHWLKSAAENQAVFQNEDTYKTLQAANIAVLVRDKNEAALVKN 598 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 L L I SVYLS+++SVF++ A+E+ W+L+A + E + +A+AT++ GLNA DI Sbjct: 599 ELQKLGIASVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNAIATALFGLNAADIH 657 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 + +E W + F Y+Q W+++G++ ML ++ + I+E LL+ A GER LTD LH Sbjct: 658 QIQQNEADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFLH 717 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 ++E+LQ+A T ESE AL+ W + I Q+RLES++ LV+IVTIHKSKGLEY Sbjct: 718 LAEILQQAATLHESEAALLSWFEKQIQG--EARQEAQIRLESERQLVKIVTIHKSKGLEY 775 Query: 750 PLVWLPFITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 805 LVWLPF+ Y+ + E + D+ +++ E AE+LRLLYVA Sbjct: 776 DLVWLPFLAAPSKDPSKKYINIYYSKERDETLWDIEN--RNLNALCEETFAEELRLLYVA 833 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI 865 LTR+ + + + ++ + + Q +G+ + + +D L + D++ Sbjct: 834 LTRAKYQMAFALPAQFDKKWNALHYV-LSQGEIGKEINLSDSKDTETLLQTFKEKMQDNV 892 Query: 866 AWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG------------ 913 T + P + + A +WR+TS++ ++Q Sbjct: 893 EICTKPNLEALPTLSINTKNDDFKASEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGK 952 Query: 914 HGIAQDLMPRLDVDAAGV--ASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN 971 D D A +++ E PRG GT LH FE+ F+ + Sbjct: 953 KHAVFDDAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANTE 1012 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEP 1030 + + + + + L W+ + PL NE G++L+ L+ ++ EM FYL I E Sbjct: 1013 EIDKLRQSLQLDETFTESLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIREH 1072 Query: 1031 LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDS 1090 + ++ L + L+F Q++GM++G IDLVFRH G+YYL+DYKSN+LG Sbjct: 1073 FDVEAFNHTLKAHHHLPSE--SLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTL 1130 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEH 1150 + Y Q+A+ M YD QY +YTLALHRYL+ + YDY FGGV YLFLRG++ E Sbjct: 1131 ADYNQEALKKEMLHSHYDWQYLIYTLALHRYLQSVVPHYDYARDFGGVFYLFLRGMNGE- 1189 Query: 1151 PQQGIYTTRPNAGLIALMDEMF 1172 PQ G++ RP+ LI +D +F Sbjct: 1190 PQSGVFYDRPSVELITELDGVF 1211 >UniRef50_A1WWI3 DNA helicase/exodeoxyribonuclease V, beta subunit n=17 Tax=Gammaproteobacteria RepID=A1WWI3_HALHL Length = 1240 Score = 925 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 466/1231 (37%), Positives = 650/1231 (52%), Gaps = 72/1231 (5%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 A+ L+PLR PL G RLIEASAGTGKT+TIAALYLRL+L G AA+ + LT ++LVVTF Sbjct: 7 AKPLEPLRFPLYGSRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTF 66 Query: 65 TEAATAELRGRIRSNIHELRIAC---LRETTDNPLYERLLEEID---DKAQAAQWLLLAE 118 TEAAT ELR RIRS + E A + +P + LL E ++AQAA+ L LA Sbjct: 67 TEAATRELRERIRSRLAEAAAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELAA 126 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 MDEAAV TIH +C RML +AF+SG LF Q L D L ++ D+WR YPL E Sbjct: 127 EWMDEAAVATIHAWCYRMLREHAFDSGSLFTQDLETDPGELLAESVRDYWRTFVYPLDPE 186 Query: 179 IAQVVFET--WKGPQALLRDINRYL---QGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 Q+ + P AL R + R + + A P + LA R ++ +K Sbjct: 187 AFQLFRQAVGAADPDALQRALARLIGADEELADDADDPLLEPSGLAERLGAWHQALEQLK 246 Query: 234 QQWRDAVGELDA-LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL-------PES 285 WRD ++A ++ N + +++++AWA++ L P Sbjct: 247 APWRDEREAVEAEFLDLHRRVLNGTKYKNPQQLLERMAAWADDPAQPVPLTDKGKPDPGL 306 Query: 286 LEKFSQRFLED--RTKAGGETPR--HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR 341 LE+ S L D R K G P H F+A+D+ E + ++ A I Sbjct: 307 LERMSATGLADPSRHKKGQSLPASLHRAFKALDR-HVELDAPGVAILRAAARWITRRFQA 365 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR--- 398 E+RRR +LGF D+L+RL ALR G LA IR++FPVA+IDEFQDTDP QY +F Sbjct: 366 EQRRRAQLGFQDLLTRLRDALRGPGGARLAQTIRSQFPVALIDEFQDTDPVQYELFETVY 425 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSV 457 RI + P L LIGDPKQAIY FRGADI +Y++AR+ HYTL N+RS+ +V +V Sbjct: 426 RIADNDPGLGLFLIGDPKQAIYGFRGADIHSYLRARAATEGRHYTLPRNFRSSEALVGAV 485 Query: 458 NKLFSQTDDAFM----------FREIPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEG 506 N+LF++ + ++ +PF PV++ G+ + F G PA+ +W G Sbjct: 486 NQLFARAEGSWPAGAFAFRGGSGGGLPFHPVEAQGRGEF--FEEAGAEHPALNLWCHDPG 543 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEA---LLMNGDDARPVRASDISVLVRSRQE 563 S Y T A+ CAA+I L G A G PVR D++VLVR+ E Sbjct: 544 VSVAKNAYLPTYAEACAARIVALLNGGAARPAVTGFRHPGGHLEPVRPRDMAVLVRNHTE 603 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A+ +++AL E+ SVYLS+RDSV T EA +++ L+A P E +R+ALAT +GL Sbjct: 604 ASAIQEALAAREVRSVYLSDRDSVLATAEADDLVRWLRACAEPTDEGLVRAALATPTLGL 663 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 +++ L DE AW+ +E+F YR++WR RGV+ ML L+ + + LLA +GGER Sbjct: 664 ALSELDRLVTDELAWERRIEQFGEYRRLWRSRGVLAMLHRLLHDFGVPQRLLAISGGERS 723 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 LT++LH++ELLQ+ + + E AL+R L + + + Q +RLESD+ LV++VTIHK Sbjct: 724 LTNLLHLAELLQQWAREHDGEQALIRHLVELRQQARNGVEDQILRLESDEDLVKVVTIHK 783 Query: 744 SKGLEYPLVWLPFITNFRV---QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLR 800 SKGL+YPLV+LPF+ FR ++ E V+ A++ERLAEDLR Sbjct: 784 SKGLQYPLVFLPFVCTFRPVTARDAPRRVPDQHGRLRWRFELDQEDVEAADSERLAEDLR 843 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE-- 858 L YVALTR+ C +G+AP+ + + + + +SA G LL + + GL +E Sbjct: 844 LFYVALTRAQHACWVGMAPITQGNTKR---SLLERSAAGYLLAGPDGVEPGGLGAVLEQA 900 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ 918 A D I + + + + +R D W + SYS L + Sbjct: 901 AAADPAITVSEPLLDEASRFVGDPAAPPLGEPCQPRRRAADAWWIASYSALVRHDTAGRA 960 Query: 919 DLMPRLDVDAAGVAS-------VVEEPTLTPHQFPRGASPGTFLHSLFEDLD-----FTQ 966 P + + H FPRG GTFLH+L E T Sbjct: 961 RSAPASAAEDVLREESGHALVQEAGGDAGSWHGFPRGPDAGTFLHNLLEWAATQLGLATA 1020 Query: 967 PVDPNWVREKLELGGFESQWE---PVLTEWITAVLQAPLNETGVS--LSQLSARNKQVEM 1021 P W+ ++E W+ + W+ A+L A L+ G L+ Q E+ Sbjct: 1021 GAQPEWLDAEVERRCRFRGWDGQVATVQGWLRALLGAELSLPGAQTTLALGRLPTYQAEL 1080 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 EF + ++PL A +LD L+ Q PP+ ++ GMLKGFIDLV HEGRYY+ DY Sbjct: 1081 EFLIE-TQPLRADRLDDLVCQHLLPGRARPPVAPARLNGMLKGFIDLVCCHEGRYYVADY 1139 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSNWLG Y + + A + RYDLQ +YTLALHR LR R+ DYDY+ H GG YL Sbjct: 1140 KSNWLGGGDGHYAPEYLEAEVLERRYDLQLVIYTLALHRLLRARMPDYDYDRHVGGGFYL 1199 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 FLRGV + P QG++ RP LI +D Sbjct: 1200 FLRGV--QAPGQGVFHARPPRALIEELDGWL 1228 >UniRef50_Q0AGC8 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Proteobacteria RepID=Q0AGC8_NITEC Length = 1228 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 463/1248 (37%), Positives = 653/1248 (52%), Gaps = 88/1248 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRP-LTVEEL 59 MS LD LPL G LIEASAGTGKTFTIA LY+RL+LG G AF LT E+ Sbjct: 1 MSQNITPLDLFTLPLTGSHLIEASAGTGKTFTIAMLYVRLILGHQGEFAFSGGALTPPEI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTD-------NPLYERLLEEID-DKAQAA 111 LVVTFTEAAT ELR RIR+ + E + + +PL + L E + A A Sbjct: 61 LVVTFTEAATKELRDRIRARLTEAARLFRADPINAQSLNDTDPLQQLLFEYSPAEWAACA 120 Query: 112 QWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 + L LA MDEAA+ TIHG+C RML +AF+S LF Q+L D++ LR + D+WR Sbjct: 121 RKLELAAEWMDEAAISTIHGWCNRMLREHAFDSQSLFTQELETDQTELRAEVVRDYWRIF 180 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI-D 230 YPL E + WK P L + + L + D T+ S + + Sbjct: 181 YYPLTLEEIVWINGYWKSPTELGKAVTPLLDYVDQLPDLSATDPSTIISASQENKQNLLT 240 Query: 231 TVKQQWRDAVGELDALIESSG----IDRRKFNRSNQAKWIDKISAWAEEETNSYQLP-ES 285 +KQ W EL AL++++ ID RK W++K+ WA + + Sbjct: 241 KLKQPWALWADELQALLDAAEAAGQIDGRKLRADWYTNWLNKLRDWANDPAMDNVDIGKG 300 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLFEAI---DQLLAEPLSIRDLVITRALAEIRETVARE 342 E+ + + K G +P HP F+ I + L R +++ A I + Sbjct: 301 WERLTSEGIAKAWKKG-TSPHHPAFDTIPVLKEALNNLPDPRIELLSHAACWIAKKFDTI 359 Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 ++ R ++GF+D+L+ L++AL GE LA IR +FPVA+IDEFQDTDP QYRIF I+ Sbjct: 360 RKHRSQIGFNDLLTGLETALTGLYGERLAQVIRQQFPVALIDEFQDTDPVQYRIFEYIYE 419 Query: 403 HQPETA---LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVN 458 L+LIGDPKQAIYAFRGADI TY+KAR V YTL+TN+RS MV++VN Sbjct: 420 ISSNRNDCALILIGDPKQAIYAFRGADIHTYLKARRAVEGRLYTLNTNFRSTQAMVDAVN 479 Query: 459 KLFSQTDDAFMFRE-----------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 F+ ++ R +PF+ V++ G+ F +GET PAM + + + Sbjct: 480 HCFASVENQADSRGAFLFRTGDGNPVPFLEVQANGRRDT--FQIEGETLPAMLLAVSAQQ 537 Query: 508 -SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD-DARPVRASDISVLVRSRQEAA 565 DY M+ +CA +I DWL G+ +A D R VR DI++LV + EAA Sbjct: 538 MELSKTDYIEQMSALCATRIVDWLNDGKSAKAGFAGQDMSFRAVRPGDIAILVNNGNEAA 597 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 +R AL + SVYLS++D+V+ T +A E+ L A P+ + LR+AL+T+ +GL Sbjct: 598 NIRQALLQRGVRSVYLSDKDTVYATRQATEVHRWLAACAEPDNDRLLRAALSTTSLGLTL 657 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG------ 679 +++ LN DE AW+ V +F GYR++W+K+GV+PMLR ++ + LLA Sbjct: 658 AELDALNTDEAAWEAQVIQFKGYRELWQKQGVLPMLRRILVDFKCGDRLLALKENLNGQS 717 Query: 680 GERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 GER LTD+LH++E+LQ+A LE EHAL+R+L++ I P+ A S+++RLESD LV++V Sbjct: 718 GERILTDLLHLAEILQQASFTLEGEHALIRFLAEQIAAPEGEADSKKLRLESDSDLVKVV 777 Query: 740 TIHKSKGLEYPLVWLPFITNFR---VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLA 796 TIHKSKGLEYPLV+LPFI R + + L A PE + A+ ERL Sbjct: 778 TIHKSKGLEYPLVFLPFICITRPIKNSDIPLKWHDDQGTLKISLAAHPEIMARADLERLR 837 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 ED+R LYVALTR+ C L L + SA+G L + + A Sbjct: 838 EDVRKLYVALTRA---CYLTWMGLAPIKNKS--------SAVGHL-FRLKATPAEQYLDA 885 Query: 857 IEALCDDDIAWQTAQTGDN--QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL----- 909 +++ + + DN + + S A R+ +NWR++SYS L Sbjct: 886 LQSFVQERPDFCVTDKPDNNLEQYVAETRSAPPGEACRPLRMVRENWRISSYSALRVDGN 945 Query: 910 --QQRGHGIAQDLMPRLDVDAAG------VASVVEEPTLTPHQFPRGASPGTFLHSLFED 961 R L + + ++T H F +GA G FLH L E Sbjct: 946 VPSTRIAQEDTPQAENLLEEQLERSFISLQPVSEQPASVTIHHFFKGAEAGIFLHELMEW 1005 Query: 962 LDFTQ----PVDPNWVREKLELGGFESQWE---PVLTEWITAVLQA--PLNETGVSLSQL 1012 + T D +R+ +E WE L +W+ +L P G+ L+ L Sbjct: 1006 VANTGFTIVSSDETDLRDTIERRCKMRHWETWVAPLVDWVKRMLSTSLPFGSIGICLNTL 1065 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + + EMEF+ S + + LD + + S P L ++ GMLKGFIDLVF++ Sbjct: 1066 TV--VKAEMEFWAEASN-VDLTLLDAAVIEQTLASRPRPHLTQSELNGMLKGFIDLVFQY 1122 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 +GRYY+ DYKSNWLG YT AM ++A+RYDLQY +Y ALHR L+ R+ DY+YE Sbjct: 1123 DGRYYVADYKSNWLGATDQDYTVAAMDEVIRANRYDLQYVIYLFALHRLLKSRLPDYNYE 1182 Query: 1133 HHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA 1180 H GG LF+RG+D P G++ RP L+ +DE+FAG T A Sbjct: 1183 QHVGGAACLFVRGIDA--PTAGVHFERPPGTLMDTLDELFAGKTEGSA 1228 >UniRef50_B4X4Z1 Exodeoxyribonuclease V, beta subunit n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4Z1_9GAMM Length = 1198 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 460/1205 (38%), Positives = 657/1205 (54%), Gaps = 44/1205 (3%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ L P+ PL G RLIEASAGTGKTFT+AALYLRL+LG G F RPL E+LV Sbjct: 1 MNIERPL-PITFPLHGTRLIEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILV 59 Query: 62 VTFTEAATAELRGRIRSNIHELRI--ACLRETTDNPLYERLLEEI---DDKAQAAQWLLL 116 VTFTEAAT ELR RIR + + A D+P+ LL + DD+A+ AQ L Sbjct: 60 VTFTEAATEELRERIRDRLADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEA 119 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A + MDEAA++TIHGFC RML +AF+SG LF +L ED S + A D+WR P Sbjct: 120 AAQWMDEAAIYTIHGFCNRMLKQHAFDSGSLFSLELQEDASDEQQMAARDYWRTIISKFP 179 Query: 177 REIAQVVF-ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 A + + P ALL L + + P ++ + +QQ Sbjct: 180 VSAANALQSDNLGNPDALLEACRPLLGLKEADPEELPQSVTHWLTQTGPQADKDQQARQQ 239 Query: 236 WRDAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 D + E + ++ ++ + ++ + + +A E + + ++L KFS Sbjct: 240 LADELPEFLEWVRAARDNKWLNGNSYRTTSLPGMLQTLQRYANGERLNGKAYDTLAKFSN 299 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRALAEIRETVAREKRRRGE 348 + + P + +D ++ + R ++ A A I V + +R+ Sbjct: 300 EGMRLTKAGQEQRPDFAFCQQLDAVMDGRANTQLPRTDLLAHAAAWIDRRVDQVRRQTAT 359 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 +GFDDMLSRL AL+ +GE LA IR +FPVA+IDEFQDTDP QY IF ++ Q T Sbjct: 360 MGFDDMLSRLHDALKGGNGERLAQVIRDQFPVALIDEFQDTDPTQYGIFCALYEGQEGTG 419 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 +IGDPKQAIYAFRGAD+FTY+KAR HYTLD N+RSA MV++VN LFS + + Sbjct: 420 WFMIGDPKQAIYAFRGADVFTYLKARRATEGNHYTLDKNFRSADAMVHAVNHLFSYSQNT 479 Query: 468 F-----MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE-SCGVGDYQSTMAQV 521 F M IPF V++ G+ L + + + +W+ E E G Y+ A Sbjct: 480 FGDVFMMDNAIPFEAVQANGRKDVL--LVDNNEKSGITLWVDEQEKPVSAGQYRDEQAAR 537 Query: 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYL 581 CA++I L +G D RP+ +DI++LVR R EA +RDAL ++ SVYL Sbjct: 538 CASEIAHLLNGAVKGVTGFQKTDSFRPLHPNDIAILVRDRTEAKAIRDALMERQVRSVYL 597 Query: 582 SNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVV 641 S++DSVF EA ++L +L A TPE + +RSALA +++ L +++ LN DE W+ Sbjct: 598 SDQDSVFAQPEAHDLLLILHACATPESDTRVRSALACAVLDLAYAELDALNQDEVRWEET 657 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 VE+F GYRQ W+ +GV+PMLR+L+ ++ L + GER LT++LH++ELLQ+A TQL Sbjct: 658 VEQFHGYRQQWQTQGVLPMLRSLLMDFHVPARLSQSLDGERALTNLLHLAELLQQAATQL 717 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR 761 + E +L+R+L + E ++ +RLESD V+++TIHKSKGLEYPLV+LPFI +FR Sbjct: 718 DGEQSLIRYLEDTVEEGRGSSKESILRLESDDDRVKVITIHKSKGLEYPLVYLPFICSFR 777 Query: 762 VQEQAFYHDRHSFEAVLDLNAAPES--VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 ++ R+ L+++ P+ + A+ ERLAED+RLLYVALTR+ C+LG+AP Sbjct: 778 PADKNKPPLRYHENDHLNVSLEPDETVENKADHERLAEDMRLLYVALTRACHTCTLGIAP 837 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQ 879 ++ RG + + +SA+GRLL G GLR + + D +A A + + +Q Sbjct: 838 YIKGRGKQ---NQLEKSAIGRLLF-GNGVANDGLRAALTPVAHDAVAIINAPDSNPECYQ 893 Query: 880 VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPT 939 + W + SYS L+Q +A + +V+++ Sbjct: 894 PKAQARPLRTPLIPVARQRQPWWIASYSALKQVQETLAPADPRGDQLAEQQDDTVIDDAE 953 Query: 940 L---TPHQFPRGASPGTFLHSLFEDLDFT--------QPVDPNWVREKLELGGFESQWEP 988 T H FPRGA+PGT LH + E V EKL+ G+ + Sbjct: 954 PLPDTIHAFPRGAAPGTLLHDVLEQAANQSFTQTLADPAEFETSVEEKLQARGW-QDFME 1012 Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 V+ W + L ++ + E+EF P + + +++DTLIRQ Sbjct: 1013 VIRHWWKQAVTTSLPLENDRIALNTLHTYVPELEFLFP-AHQVKVAEMDTLIRQHIHPQH 1071 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 P LE + GMLKGFIDLVF H+G+YY+LDYKSNWLG D SAYT AM A+ RY+ Sbjct: 1072 PRPRLEADTLNGMLKGFIDLVFEHDGKYYVLDYKSNWLGVDDSAYTLDAMTDAVLEKRYE 1131 Query: 1109 LQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALM 1168 +QY LY LALHR L+ R+ DYD + H GG +Y+FLRG+ + P G RP GLI + Sbjct: 1132 VQYVLYLLALHRLLKSRLPDYDPDQHLGGAVYVFLRGL--QGPAAGTVFDRPATGLIEAL 1189 Query: 1169 DEMFA 1173 D MF Sbjct: 1190 DVMFE 1194 >UniRef50_C9PR37 Exodeoxyribonuclease V beta subunit n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PR37_9PAST Length = 1234 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 440/1252 (35%), Positives = 644/1252 (51%), Gaps = 98/1252 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M D L+ + PL LIEASAGTGKT+TI +LYLRLLL G FP PLTVE++L Sbjct: 1 MMDSPRNLNAVSTPLNTVCLIEASAGTGKTYTIGSLYLRLLLQAGVEN-FPLPLTVEQIL 59 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLR-------ETTDNPLYERLLEEIDDKAQAAQW 113 VVTFTEAAT EL+GRIR IH+ + A + ++ P + L++ I+D A Q Sbjct: 60 VVTFTEAATNELKGRIRERIHQTKQAFIAYKEQGESALSEEPFLQELIQHIEDIDIAIQR 119 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +AE+ MD AA++TIHGFC+RML AF SG+ F +L++DE L ++WR Y Sbjct: 120 LKIAEQSMDLAAIYTIHGFCRRMLMQYAFNSGVHFNLELVKDEGELIQHCFNEYWREQFY 179 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIK------APPPDDETLASRHAQIVA 227 PL A ++ PQA+ R++ + + E LA I Sbjct: 180 PLSFAEANYIYNALSSPQAVRRELYSQISDFGLRPQIKQTELLALSLREFLAEYILPIQQ 239 Query: 228 RIDTVKQQWRDAVGELDALIE-----------SSGIDRRKFNRSNQAKWIDKISAWAEEE 276 +I +KQ W E+ LIE + R F + KW+ + WA Sbjct: 240 QILDLKQAWLKDEDEIIGLIENELAKSYKKGEKKALKRTTFKCNFVPKWLQTMKDWARAN 299 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPL---SIRDLVITRALA 333 ++ F+Q L + HP FE D+ +A R +++ L Sbjct: 300 NRVNLPDVLVKYFNQEALNGYAEEDVTPITHPFFELADEAVATQKMQGIYRKVIMYHYLK 359 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 +++ + + K E GF+D+L L AL SE G+ LA IR ++P AMIDEFQDTD Q Sbjct: 360 GVQKLLIQHKLDHSEKGFNDLLRLLQEALYSEKGDELAQFIRLQYPFAMIDEFQDTDNIQ 419 Query: 394 YRIFRRIW--HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAP 451 Y+IF +I+ T ++IGDPKQAIY FRGADIFTY KA E +TL TNWRS Sbjct: 420 YQIFSKIYIQLSSSPTGFIMIGDPKQAIYKFRGADIFTYFKAALETKQKFTLGTNWRSEE 479 Query: 452 GMVNSVNKLFS----QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 +VN+VN LF F++ +I F PV + + +F G+ QPA++ ++ + Sbjct: 480 TVVNAVNGLFDFDENPLVQPFLYEQIQFQPV--SFRANKPKFYLNGKVQPAVQCYIGDLG 537 Query: 508 SCG-----VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR----PVRASDISVLV 558 D + +A+ CAA I WLQ+ +A+ D++ P+ I+VLV Sbjct: 538 KESRNGRLNEDQRYILAETCAASIYQWLQSAVENQAVFKASRDSKEEIEPLTEERIAVLV 597 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 R +EA ++ AL + I SVYLS+ +VF+ +AQE++ +L+A + P E + +A+AT Sbjct: 598 RDWKEAEVIKSALQKVGIASVYLSDNSNVFDCPQAQELVLILKACLNPFSERNILNAIAT 657 Query: 619 SMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 S+ L + +I + DE W V++F Y++IW+ + ++ ML L + IAENLL T Sbjct: 658 SIWRLTSAEINQIKQDEQRWTNTVDDFVRYQRIWQTQSILAMLHQLFLEKKIAENLLMTE 717 Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 GGER +TD+LH++ELLQEA ES +L+RW + I + ++ Q+RLES++ LV+I Sbjct: 718 GGERAVTDLLHLAELLQEASPLNESPASLLRWFEKKI-QGENRQGDLQIRLESERKLVKI 776 Query: 739 VTIHKSKGLEYPLVWLPFITNFRVQEQAF---YHDRHSFEAVLDLNAAPESVDLAEAERL 795 VT HKSKGLEY LVWLPFI N + Y + + D+ E D + E Sbjct: 777 VTFHKSKGLEYDLVWLPFIANPPKSNDSLIQTYFNEEQKAVLWDMEG--EHSDEIQRELR 834 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 AE++RLLYVALTR+ + + + + + +A+ LL +G A+ +RT Sbjct: 835 AEEMRLLYVALTRAKYQVIIAMPE----------NFSSNWNAIQYLLTQGRMDVAS-VRT 883 Query: 856 CIEALCDD------DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL 909 + A D IA + + + +L+A T NW+VTS+S + Sbjct: 884 ALTAFKDRMAKQNVQIAIDDLLDIEGKAPLLLAKPNEQLSAATFTGSIEQNWQVTSFSAI 943 Query: 910 ---------------QQRGHGIAQDLMPRLDVDAAGVASVVE------------EPTLTP 942 +Q +Q L D D V E +P Sbjct: 944 SHFHEKSVLQHYLDAKQSAVDFSQFLSQEKDYDQNVVIDNTALVSFGTTILEGYEADYSP 1003 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL 1002 FP A G LHS FE QPV+ + V + + E W+ L W+T +L PL Sbjct: 1004 FDFPASARVGKVLHSYFEKYPLNQPVEMDAVEKICQQLQLEDVWQITLQRWLTQILHTPL 1063 Query: 1003 -NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP-PLEFMQVRG 1060 + + LS L+ ++ E+EFYL + + + L++++ S + ++G Sbjct: 1064 FSTSTFCLSDLAMKDCLKELEFYLKLENTFDVVRFNHLLQKYHLFSEPLQLDVVREGIKG 1123 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 ML+GFIDLVFRH G+YYLLDYKSN LG S Y+ + + M H Y QY Y +ALHR Sbjct: 1124 MLRGFIDLVFRHNGKYYLLDYKSNKLGNLLSDYSTENLEKTMCKHYYHWQYLFYCVALHR 1183 Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 YL+ R +Y YE HFGGV+Y FLRG++ + +G+Y T P+ LI ++E+F Sbjct: 1184 YLKERDPNYQYESHFGGVVYAFLRGMNGQSA-RGVYFTVPDVALIQELEELF 1234 >UniRef50_C9R4S1 Exodeoxyribonuclease V, beta subunit n=5 Tax=Pasteurellaceae RepID=C9R4S1_AGGAD Length = 1221 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 416/1239 (33%), Positives = 635/1239 (51%), Gaps = 89/1239 (7%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + L+P+ +PL LIEASAGTGKT+T+ +LYLRLLL G AFP L VE++LVVTF Sbjct: 1 MQPLNPISIPLNAISLIEASAGTGKTYTMGSLYLRLLLQAG-ENAFPHVLNVEQILVVTF 59 Query: 65 TEAATAELRGRIRSNIHELRIACLRET--------TDNPLYERLLEEIDDKAQAAQWLLL 116 TE AT EL+ +IR I++ + + +L + I D A Q L L Sbjct: 60 TEMATEELKRKIRERIYDAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTL 119 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 AE+ MD AA++TIHGFC+RML AF SG+ F +L +E L WR H Y P Sbjct: 120 AEQNMDLAAIYTIHGFCRRMLMQYAFNSGIHFNLELSGEEDELLLHLAQKLWRAHFYSQP 179 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET--------LASRHAQIVAR 228 +++ + + P ++ +I ++ E + + P + L Q A+ Sbjct: 180 YAVSEFIQKHLISPANVIHNIKKFAGTELKLPQNRPHFFDGTLPDFLAKLTDYSQQFAAQ 239 Query: 229 IDTVKQQWRDAVGELDALIE-----------SSGIDRRKFNRSNQAKWIDKISAWAEEET 277 VK+ W + ++ L+E ++RR F + + KW+ + AWAE + Sbjct: 240 TAEVKKHWLENEADIAQLLETEVNTKYKSAKEQKLNRRSFTSTTRLKWLAMMKAWAESDK 299 Query: 278 NSYQLPESLEKFSQRFLEDRT-KAGGETPRHPLFEAIDQLL---AEPLSIRDLVITRALA 333 + P +F Q + ++ + + H LF ID+LL + + + L Sbjct: 300 ADF--PGCFSRFGQTAMNEQKGEEAKDALMHWLFVEIDELLQLAEQQELLSQALWFHYLQ 357 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 + + K E F+D+L L AL A IR +FP AMIDEFQDTD Q Sbjct: 358 MLNTQLVEYKLNHSEKSFNDLLRLLKEALYHPDNTEFARLIRYQFPFAMIDEFQDTDAVQ 417 Query: 394 YRIFRRIWHHQPET------ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNW 447 Y+IF +I+ QP+T ++IGDPKQAIY FRGADIFTY +A + + L N+ Sbjct: 418 YQIFSKIYVEQPQTDAQSDSGFIMIGDPKQAIYKFRGADIFTYFQAARQAQHRFNLAKNY 477 Query: 448 RSAPGMVNSVNKLFSQTDDA-FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 RS +V+ VN+LF ++ F++++I F+PV + + +F G+ +PA++ ++ E Sbjct: 478 RSHQHVVDCVNRLFDFSEQPPFLYKDIQFMPVSA--RTDHPQFWLSGQPEPAVRFYVDE- 534 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM-NGDDARPVRASDISVLVRSRQEAA 565 + +A+ CA I+ WLQ+ A+ + D + ++ I+VLVRSR+EA Sbjct: 535 -----ASVKENIAKACAVSIQYWLQSAVENSAVFRLDDGDKKTLKPESIAVLVRSRKEAE 589 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 V++ L L I SVYLS +VF++ A+++L +L A + P E + +A+AT++ + Sbjct: 590 LVKNELRHLGIASVYLSEDSNVFDSSAAKDLLMILTACLNPFYERHILNAIATAIFAQTS 649 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 DI+ + DE W+ VE+F Y++ W+K+GV+ ML L I E L T G+R +T Sbjct: 650 ADIQRIRMDETRWEHWVEKFIHYQRTWQKQGVLVMLHQLFQQEKITEKLYPTVDGKRLVT 709 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 D+LH++ELLQEA T ESE AL+RW + I + ++ QQ+RLES+ LV+IVTIHKSK Sbjct: 710 DLLHLAELLQEAATLNESEAALLRWFEKQI-QGENRQKEQQVRLESELRLVKIVTIHKSK 768 Query: 746 GLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 GLEY LVWLPFI FR Y+D + D + + E+ L + E AE LRLL Sbjct: 769 GLEYDLVWLPFIGYASTFRGDRITTYYDETQGAVLWDYDKSHEA--LVQQEDFAEQLRLL 826 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVALTR+ + +GV + H A+ + L + Sbjct: 827 YVALTRAKYQLVIGVPQTFETKWSSLLYVLTH-GAIQTREKPNAYDSLPLLEKLVARAPQ 885 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL-----------QQ 911 + Q + + L+A NW VTS+S + Q Sbjct: 886 GSVQIANTADLIPLQLQAHAEAQIPLHAAKFTGNIEQNWTVTSFSAIEAIHQNKAYFKAQ 945 Query: 912 RGHGIAQDLMPRLD----------------VDAAGVASVVEEPTLTPHQFPRGASPGTFL 955 + A D D + +P FP G + GT L Sbjct: 946 QMAESAVDFPSVFDLGKDYDFNEQGQSTESIRETAADESAYPFGYSPFDFPHGINIGTAL 1005 Query: 956 HSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLS 1013 H E DF +P++ + +++ + E W P L +WI A+L PL+ ++ + L L+ Sbjct: 1006 HRFLEKTDFDRPLNEDKIQKLCQWLQLEETWLPSLQQWINAILHTPLSTQDSTLQLVNLT 1065 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 ++ EM+FYL +++ + + ++Q L + PL+F ++GML+GF+DLVF H Sbjct: 1066 RQHCVKEMQFYLKLNQTFDVTAFNQTLQQHHHLPSE--PLQFEAIKGMLRGFMDLVFYHN 1123 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 +YYL DYKSN+LG ++ Y ++ AM + YD QY YTLALHRYL+ R A+YDY+ Sbjct: 1124 EKYYLADYKSNFLGVEAQNYVGTSLQQAMLTNHYDWQYLFYTLALHRYLQQRDANYDYDT 1183 Query: 1134 HFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 HFGGV Y FLRG++ E+ Q G++ +P+ LI ++ +F Sbjct: 1184 HFGGVFYCFLRGMNGEN-QNGVFFDKPDYALIQALENLF 1221 >UniRef50_Q12LP4 Exodeoxyribonuclease V, beta subunit n=3 Tax=Gammaproteobacteria RepID=Q12LP4_SHEDO Length = 1355 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 449/1311 (34%), Positives = 662/1311 (50%), Gaps = 154/1311 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 +S LD L LP G LIEASAGTGKT+TI+ LYLRLLLG G PL+ E++L Sbjct: 30 ISPTRSPLDALTLPFLGSSLIEASAGTGKTYTISGLYLRLLLGHGELP----PLSCEQIL 85 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWLLLAE 118 VVTFT AAT ELR RIR I L ++ L + + + A + L LA Sbjct: 86 VVTFTNAATQELRDRIRKRIQVAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLAL 145 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 + +DEAA+FTIHGFCQR+L AFES +LFE + D+S + + DFWR CYPLP Sbjct: 146 KSLDEAAIFTIHGFCQRILADLAFESSLLFESEFTLDDSEFLHHSVRDFWRETCYPLPPY 205 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 +A+++ + + P L + L P TL ++R+ + W+ Sbjct: 206 LAEIIAKQFGEPDTLASKLRPLLGPNEAKTLGIIPAFSTLTQDLTTSLSRLKLL---WQS 262 Query: 239 AVGELDALIESSGIDRRKFNRS-----NQAKWIDKISAWAEEETNSYQLPESLEKFSQRF 293 AL+ S ++ +F + + D++S WA + Sbjct: 263 EQENTLALLHSLPLNGTRFGKQSDGYPKLGQMFDELSHWASADYGLPSTKALSSLALSEL 322 Query: 294 LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDD 353 ++ PL DQ+ A + + RA I++ +K +R + DD Sbjct: 323 KLNKGGVVPSAAEAPLLAHFDQINALINNFIPAFLLRAKEGIKQRFMAQKHQRNLMAPDD 382 Query: 354 MLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP-------- 405 +LS L SAL + LA+AI RFPVA+IDEFQDTDP Q+ IF +++ Sbjct: 383 LLSNLASALDANPDT-LASAIGQRFPVALIDEFQDTDPLQFNIFSKVYGKASSPSQEQLQ 441 Query: 406 ------ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 +LL+IGDPKQAIYAFRGADI TY++AR++ AHY L TN+RS+ +V VN+ Sbjct: 442 APNTATGLSLLMIGDPKQAIYAFRGADIHTYIQARNQTPAHYNLATNFRSSENLVLGVNR 501 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC---GVGDYQS 516 LF+Q D F+ + IPF VK+ + + ++ A+++ L+ ++ + Sbjct: 502 LFAQHKDPFINQAIPFDSVKTPSSAAEKQLIGAQISKAALQIKLLAEDAEFGLNKTQARQ 561 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDD-ARPVRASDISVLVRSRQEAAQVRDALTLLE 575 +A A++IR L Q+GE L + RP++A DI+VLVR R EAA ++ AL + Sbjct: 562 HLAADAASEIRQLLTQAQQGECQLSESNKPPRPLKAKDIAVLVRDRNEAAVIKAALNARQ 621 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 I +V+LS RDSVF+TLEA+E+L LL+A+ P+ E LR+ LAT +MG +AL I + N DE Sbjct: 622 IGAVFLS-RDSVFDTLEARELLLLLRALANPKDERLLRAGLATELMGYDALQIHSFNQDE 680 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA------------------- 676 + ++ +F + Q+W+++GVMP L AL + + LA Sbjct: 681 DSRQTLLSQFYHWHQLWQRQGVMPALLALANWSGLIPRFLAKGSTKDFLAKGSANNSQND 740 Query: 677 ---------------------------TAGGERRLTDILHISELLQEAGTQLESEHALVR 709 A GERRLTD H+ ELLQ+ T+L+ AL+ Sbjct: 741 SHNNSAAPQSTSATEFDTEQDETQPSELASGERRLTDFRHLCELLQQKATELDGSAALIN 800 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF--ITNFRVQEQAF 767 W Q ++ ++ QQ+RLES+++LVQIVTIHKSKGLEYP+ ++PF + + + Sbjct: 801 WFEQQLIAANTT-DEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARGGNRRPSP 859 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 + + D++ E ++ + LAEDLRLLYVALTR V+ C L +A R+ Sbjct: 860 ILYHKEGQLIWDIHDTDEGLESYQQAHLAEDLRLLYVALTRPVFRCYLYIANQCRQLKG- 918 Query: 828 KGDTDVHQSALGRLLQ-KGEPQDAAGLRTCIEALCDDDIAWQ---TAQTGDNQPWQVNDV 883 + + ++ +G LL K + D + ++ ++A+ D A + ++ D Q + ND Sbjct: 919 GVSSQLAETGIGYLLGAKDKKVDFSFIQGAVQAITADIPAIEVSLVSENPDTQVLKNNDD 978 Query: 884 STAELNAKTLQRLPGDNWRVTSYSGLQQRGHG-----------------------IAQDL 920 + L KTL R WRV SYSGL + A ++ Sbjct: 979 NDHHLAPKTLTRGYQTPWRVGSYSGLVKHQAHEKVSPGADDEEFTDELTLHFIEQEAHEI 1038 Query: 921 MPRLDVDAAGVASVVEEPTL-------------------TPHQFPRGASPGTFLHSLFED 961 +P D A + ++EP F RGA+ G+F+H + E Sbjct: 1039 LPEHLADKALTPAPLDEPEPLDGPVPLDEPVPLDEPAPLDRFSFERGANAGSFMHLVLES 1098 Query: 962 LDFTQPVDP--NWVREKLELGGFESQ-WEPVLTEWITAVLQAPL---------------- 1002 DF+Q + +R+ + GF+++ W LT W ++ PL Sbjct: 1099 FDFSQYQSQLSDAIRDAMVHYGFDAELWLEPLTTWYQEIVTTPLLIPEQTPRNTQFAASQ 1158 Query: 1003 NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGML 1062 + SLS+L+ +VEMEFYLPIS L + L+ L++ L F +RGML Sbjct: 1159 QQRRFSLSELNPSKIKVEMEFYLPISA-LGSLALNKLLQSHG----YQAQLSFDTLRGML 1213 Query: 1063 KGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 KGFIDL F ++G++++ DYKSN LG Y MA AM H+Y LQY +YTLALHRYL Sbjct: 1214 KGFIDLTFEYQGQFFIADYKSNHLGNSLEDYQMANMAKAMDEHQYHLQYIIYTLALHRYL 1273 Query: 1123 RHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 + R+ YDY+ H GG YLFLRG+ H G++ RP+ LI +D +F+ Sbjct: 1274 KLRLPSYDYDTHIGGCFYLFLRGMSPTHVGTGVFFNRPSLDLIKALDSLFS 1324 >UniRef50_A7JVG0 Exodeoxyribonuclease V n=3 Tax=Mannheimia haemolytica RepID=A7JVG0_PASHA Length = 1174 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 416/1209 (34%), Positives = 609/1209 (50%), Gaps = 75/1209 (6%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + L+P++LPL LIEASAGTGKTFTIA LYLRLLLG+G PLTVE++LVVTF Sbjct: 1 MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGC-----NPLTVEQILVVTF 55 Query: 65 TEAATAELRGRIRSNIHELRIACLRETT------------DNPLYERLLEEIDDKAQAAQ 112 T+AAT EL+ RIR NI + + + ++ I + +A Sbjct: 56 TKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALL 115 Query: 113 WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHC 172 L +AER++D A+VFTIHGFCQ+ML AFESG+ F+ L ++S L + + WR Sbjct: 116 RLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEEVWREQF 175 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 YP I V E P+ L + RYL E P A + +A AQ I+ V Sbjct: 176 YPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLN--QDIAEHLAQYQQFINEV 233 Query: 233 KQQWRDAVGELDALIESSG-----IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 K W+ EL I + + + ++ ++ WA + N P L Sbjct: 234 KSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMNQWANSQHN--HFPAGLY 291 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP-----LSIRDLVITRALAEIRETVARE 342 F+ + TK E P L S+ ++ + L ++ +A Sbjct: 292 LFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSAMLQYQFLIALKAKLAEY 351 Query: 343 KRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 K+ + FDD+L+ L+ AL++ +GE L+ IR +P AMIDEFQDTD QY IF +I+ Sbjct: 352 KQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAMIDEFQDTDLTQYEIFSQIF 411 Query: 402 -HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKL 460 E ++IGDPKQ+IY FRGADIFTY++A + +TL NWRS P +V +VN L Sbjct: 412 MAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVNNL 471 Query: 461 FSQTDD--AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM 518 FS +D F++ +I F PV++ + L + ++ + Sbjct: 472 FSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFVGYITENSKLDD-----------L 520 Query: 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 A++CA QI L+A +G+ + + + A DI++LVR +A +++ AL I S Sbjct: 521 AEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQAKRIKKALAKRNIKS 580 Query: 579 VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW 638 VYL+ SVF + A E+ WLLQA + P L SAL +++ GL A +I +E W Sbjct: 581 VYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWGLTAAEIHRYKENEQLW 640 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG 698 D+ V +F Y IW+++GV+PML + + I E L +R +TD+LH++E+LQE Sbjct: 641 DLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENADRLITDLLHLTEILQETS 700 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 LESE L+RW + + PD N QQ+RLES++ L++IVTIH SKGL+YP+VWLPF++ Sbjct: 701 QALESEAELLRWYEKQVNSPDFN-DEQQLRLESEEELIKIVTIHGSKGLQYPIVWLPFVS 759 Query: 759 NFRVQEQ--AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 + A R+S A+ + E+ + E AEDLRLLYVALTR+ +L Sbjct: 760 QKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAYAEDLRLLYVALTRAESQLNLV 819 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQ 876 + + S L LL GE + + IA + Sbjct: 820 LPKEISGW-----------SPLHYLLADGEIPTGKVPVS--DYFSQKRIAANLVEVAGEL 866 Query: 877 PWQ--VNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ-------DLMPRLDVD 927 P+ + S+ + AKT ++TS++ L + ++ DL DV Sbjct: 867 PFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSERVMDLAQDRDVH 926 Query: 928 AAGVASVV--EEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQ 985 + + E +P QFP G GT LH FE F + +D V + E G + Sbjct: 927 IETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDREAVAKVCEQLGLSEE 986 Query: 986 WEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP 1045 W W +L PL E L + + E +FYL + QL+ L++Q P Sbjct: 987 WIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKNDKALHQLNALLKQHSP 1046 Query: 1046 LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 L+ P L+ Q+ G ++GF+D + + E ++YL+DYKSN+LG Y ++ + M Sbjct: 1047 LAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLGYLPQNYAKEHIQREMGRQ 1106 Query: 1106 RYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGL 1164 RYDLQY LYTLALHRYL R+ + YDYE FGGV YLFLR ++ E+ G+Y +P L Sbjct: 1107 RYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLRAMNGEN-DNGVYFDKPTKQL 1165 Query: 1165 IALMDEMFA 1173 I MD +F Sbjct: 1166 IEEMDRLFG 1174 >UniRef50_Q60AZ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Methylococcus capsulatus RepID=Q60AZ5_METCA Length = 1200 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 422/1218 (34%), Positives = 589/1218 (48%), Gaps = 64/1218 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS V LD R PL G LIEASAGTGKT+ I LYLRLLL + V+ +L Sbjct: 1 MSAV-RPLDVFRCPLAGVNLIEASAGTGKTWNICGLYLRLLL--------EQEREVQNIL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEID---DKAQAAQWLLL 116 VVTFT AATAELR RIRS I E + +P L+ ++ D+A Q L Sbjct: 52 VVTFTNAATAELRERIRSRIVETLVYLRGGGGAADPFVTGLVAALEGGFDRALLRQRLER 111 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP-- 174 A DEAA+FTIHGFCQR L F +G+ F +L++D+++L + DFWRR Sbjct: 112 ALLAFDEAAIFTIHGFCQRALAGTPFAAGLPFALELVQDDAMLAQEVANDFWRRRVAAGG 171 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 L R + + E P+ + L + P P + ++A ++ Sbjct: 172 LSRAMIAHLLEAGDDPEKYASLLGHALAKSLSDWRWPEPVEPPDERDEQALLAAFGEARR 231 Query: 235 QWRDAVGELDALIESS--GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 W+ + L+E + ++ + ++ AW + + ++ F Sbjct: 232 LWQADAFGIVRLLEEAIDQLNGVSYKAASLETARKGWDAWFATNDPLAPVEDKVQLFRAA 291 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLA-------EPLSIRDLVITRALAEIRETVAREKRR 345 L+ TK G TP HP F+A + LLA R ++ + E + EKRR Sbjct: 292 MLKGGTKKGNTTPYHPFFDAAENLLALKDGIQGRLAVARLGLLRELVEHGAEALRAEKRR 351 Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--HH 403 R +GFDDML + AL S LA A+R+R+PVA+IDEFQDTDP Q+ IFR ++ Sbjct: 352 RRVIGFDDMLWNVHEALTSGCYPWLAPALRSRYPVALIDEFQDTDPLQFAIFRALYLAEG 411 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 + +GDPKQAIY FR AD++TY+ AR + YTL N RS ++++ N LF Sbjct: 412 AVSGPVFFVGDPKQAIYGFRNADLYTYLGARHQADREYTLVENQRSVTEVIDACNALFGA 471 Query: 464 TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC- 522 AF+ + + PV+ K + + F E + ++WL+ + G ++ + C Sbjct: 472 NPRAFLLEGLEYRPVRPGAKPRPV-FTDVTEPRSPFQVWLLPRDEAGGWLPRTEAVRRCT 530 Query: 523 ---AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 AA+I +Q G G L R +RASDI+VLVR + +R AL L + SV Sbjct: 531 DTTAAEIARLIQEGMAGRIRLGE----RALRASDIAVLVRRHAQGRLIRQALARLGVGSV 586 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 LS SVF TLEA+E+ +L AV+ P R+ LR+ALAT +MG +AL I ++ DE Sbjct: 587 ELSQA-SVFHTLEAEEIERILLAVLEPGRDRLLRAALATEIMGCDALTIAGISADEDRLL 645 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 ++ F YR++W+ RG PM R L+ +A +LA GERRLT++LH+ ELL +A Sbjct: 646 EIMLRFGEYRELWQLRGFGPMYRRLLHDEGVARRVLAQPDGERRLTNLLHLGELLHQAQA 705 Query: 700 QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 L S AL+RWL Q + Q+RLESD++LVQIVTIHKSKGLEYP+V+ P++ Sbjct: 706 GLTSPDALLRWL-QSRRRDSAAQEDAQLRLESDQNLVQIVTIHKSKGLEYPVVFCPYLWE 764 Query: 760 FRV-----QEQAFYHDRHS---FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 QE YHD + + P E AE LRL+YVALTR+V Sbjct: 765 GNRGARGKQEGIEYHDESGVPVLDFRPEAKNDPGIKWQRRQEEDAETLRLIYVALTRAVQ 824 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLL--QKGEPQDAAGLRTCIEALC-------- 861 C L +R + +S L L + P+ +T ++ Sbjct: 825 RCYLFAGVYRTKREASASCGESTRSMLNWLACGKDHSPEQWQDAKTRLDPAHIEAGWRAL 884 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ-DL 920 D I L A+T W S++ L + + Sbjct: 885 PDAIGVAPMPAIVVPAMAGPSSGLERLAAQTPPAWIPPGWSTGSFTSLVRAMEAGGEGRD 944 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV---REKL 977 L + A P +FPRGA+ GT +H LFE DFT P + L Sbjct: 945 HDALSLAPALGPPPAALPENDILRFPRGAAAGTCIHHLFEQADFTDPAGWDDAIGRALAL 1004 Query: 978 ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 G E+ +L + VL L + G+ LS++ + E+ F LP +E L +L+ Sbjct: 1005 RPQGSETAAPAMLKSLLADVLATDLGD-GLRLSEIGRGQRLSELAFRLP-AEGLDPVRLN 1062 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 L+R L+F + G L+G IDLVFRH RYYLLD+KSN LG Y A Sbjct: 1063 ALLRDH---GYAMGKLDFRLLSGYLQGAIDLVFRHRSRYYLLDWKSNHLGYTREDYGPPA 1119 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYT 1157 +A M A Y LQY LYT+AL RYL R+ Y Y HFGGV YLF+RGV G+Y Sbjct: 1120 LAETMAAEGYHLQYLLYTVALDRYLARRLPGYAYTSHFGGVYYLFVRGVRPAWRGAGVYF 1179 Query: 1158 TRPNAGLIALMDEMFAGM 1175 RP IA +D + G Sbjct: 1180 QRPAEDCIAALDALIGGR 1197 >UniRef50_A1S6V0 Exodeoxyribonuclease V, beta subunit n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6V0_SHEAM Length = 1224 Score = 908 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 457/1239 (36%), Positives = 638/1239 (51%), Gaps = 80/1239 (6%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + LD LP G RLIEASAGTGKT+TIA LYLRLLLG+G RP VEE+LV Sbjct: 1 MQASMPLDAFTLPFDGARLIEASAGTGKTYTIANLYLRLLLGIGQ----QRPFKVEEILV 56 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT AAT+ELR RIR I + CL E +++ +LL + D+ A + L LA + + Sbjct: 57 VTFTNAATSELRDRIRRRIQDGFRLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTL 116 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEAA++TIHGFCQR+L+ AFES +LFE + D+S L A ADFWR HCYPL +IA Sbjct: 117 DEAAIYTIHGFCQRVLSDMAFESALLFESEFTLDDSELLSMAAADFWRAHCYPLSADIAA 176 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 +V + P+AL +++ L V++ D LA + ARI ++ W+ Sbjct: 177 MVQAKFASPKALEQELKSLLGARDAVVELQMEDFSKLA---SGFSARIARLRLAWQRQAE 233 Query: 242 ELDALIESSGIDRRKFNRSN--QAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 + + ++ + ++ K + P + + + Sbjct: 234 DTLTTLCKLPLNGVSYGKAADGFPKLKNHWDTMTAWSLRCEGTPPEKAMQAVAYGNIKLN 293 Query: 300 AGGETPRHP---LFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLS 356 GG+ P L ID+LL ++ + A EI+ K R + DD+L Sbjct: 294 KGGQLPGPETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLLK 353 Query: 357 RLDSAL-------------RSESGEVLAAAIRT----RFPVAMIDEFQDTDPQQYRIFRR 399 L AL SE +A + + RFP+A+IDEFQDTDP Q+ IF Sbjct: 354 HLAKALGVQGSGSGSGFEPASEIDREIALRLSSEVASRFPMALIDEFQDTDPLQFAIFSA 413 Query: 400 IWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVN 458 ++ QP LL+IGDPKQAIYAFRG DI TY+ AR AHY+L TN+RS+ MV +VN Sbjct: 414 LYRQQPRAQGLLMIGDPKQAIYAFRGGDIHTYLGARRTAAAHYSLGTNYRSSSAMVQAVN 473 Query: 459 KLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM---EGESCGVGDYQ 515 +FS + F+ EIPF PV ++ + PA+++ L+ + + Sbjct: 474 TVFSVRERVFLSDEIPFEPVAASDSGAKTLLIDGKTQGPALQIALLGEDPDKGLNKQTAR 533 Query: 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 + MA+ AA I L G A+L + RP+ A DI+VLVR R EAA ++DALT Sbjct: 534 ALMAEDAAAHIGQLLCLATEGRAVLAD--KQRPLLAKDIAVLVRDRNEAAFIKDALTRRN 591 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 I +V+LS RD+VF T EA E+L +L A+ P E LR+A+AT +MG + +I N DE Sbjct: 592 IGAVFLS-RDNVFATKEASELLHVLAALAQPRDEKRLRAAMATRLMGWSLSEIAAFNQDE 650 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ 695 A +E F+ + Q W+K+GVMP L A + E L +RRLTD H+ ELL+ Sbjct: 651 EARRQALECFERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTDFRHLCELLE 710 Query: 696 EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 +AG L+ AL+ W Q +L+P + + Q+RLES+++LVQIVTIHKSKGLEY L ++P Sbjct: 711 QAGASLDGISALLGWFEQALLDP-GSDEAMQLRLESEQNLVQIVTIHKSKGLEYGLCYIP 769 Query: 756 FIT--NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 F++ + + V DL E V+ +AERL EDLRLLYVALTR V+ C Sbjct: 770 FLSLARDSRGKPSPLLYHKDDRLVWDLLQTDEGVECYDAERLGEDLRLLYVALTRPVYGC 829 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD-AAGLRTCIEALCDDDIAWQTAQT 872 LG+A R ++V+++ALG LL LR E + + Sbjct: 830 RLGLANHSRM-LKAGISSEVYKTALGFLLGIDSKDCDINVLRQAAERVSSHAHGSEIIGV 888 Query: 873 GD------NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP---- 922 D ST + + R+ ++WRV SYS L +G G + Sbjct: 889 VDIIQHDLTVLESAQHESTEPPSPRKPNRIGEESWRVGSYSALIAQGAGHTEHPGDIART 948 Query: 923 --------------------RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL 962 L + + + L+ FPRGA+ G+F+H + E + Sbjct: 949 HEETTAAAIPGAGDESFSVLELPLPDEPEPASQDTGALSRFSFPRGANAGSFMHQVLELI 1008 Query: 963 DFTQPVD--PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQ 1018 F + P + + + G ++QW+PVL W ++ APL + +L LS Sbjct: 1009 RFDAVAETLPEVLPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDEKGQFALGDLSPAQLL 1068 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 VEMEFYLP+S L L L+ + F + GMLKGFIDL F H+GR+Y+ Sbjct: 1069 VEMEFYLPVSR-LKPGALGDLLALYG----YRSDFGFDTLNGMLKGFIDLCFSHDGRFYI 1123 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 DYKSN LG+ Y + AM A+Q H YDLQY LYTLALHR LR R+A YDY+ GG Sbjct: 1124 ADYKSNHLGDTLDHYHRDAMHTAIQDHHYDLQYLLYTLALHRLLRSRLAQYDYDKDVGGC 1183 Query: 1139 IYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 YLFLRG+ P G+Y +P LI +D +F G + Sbjct: 1184 FYLFLRGMSASSPGTGVYFDKPPKLLIQALDALFEGKEI 1222 >UniRef50_A3YGC7 Exodeoxyribonuclease V, 135 kDa subunit n=3 Tax=Gammaproteobacteria RepID=A3YGC7_9GAMM Length = 1255 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 470/1244 (37%), Positives = 681/1244 (54%), Gaps = 87/1244 (6%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 LD L PL G+RLIEASAGTGKT+TIA LYLRLLL + + F R LTV+E+LVVTFT Sbjct: 11 HALDALDFPLFGKRLIEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVVTFT 70 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAA--QWLLLAERQMDE 123 EAATAEL+ RIR+ I E R A L T +P +LL + + A + LL AE+QMDE Sbjct: 71 EAATAELKARIRNRIREARKALLLGQTKDPFLSQLLASMTEAEIALGVERLLYAEKQMDE 130 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 AA+FTIHGFCQRML+ NAFES MLF+Q++ DE A D WR + YP+ +IA +V Sbjct: 131 AAIFTIHGFCQRMLSQNAFESRMLFQQEIETDEQAPLAMAIKDVWRSNIYPMTSDIAALV 190 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPP-----DDETLASRHAQIVARIDTVKQQWRD 238 W P+AL ++++ +I+ + L++ ++ I VK W + Sbjct: 191 KPIWPTPEALQKELSLLQNQPDAIIQDAISGEIKTEAFDLSALMSKAQESIKKVKSVWLE 250 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 + + +SGI F QA D I WA+ +T LP L+KF+ R + Sbjct: 251 QAANILDALTNSGIKG-TFWGKRQAGIPDIILDWAQSDT--ISLPPELKKFNAREHSHQL 307 Query: 299 KAGGETPRHPLFEAIDQLLAEP---LSIRDLVITRALAEIRETVAREKRRRGELGFDDML 355 K G P H FE + L+ I+ ++ + + + K++ +L F D+L Sbjct: 308 KKNGAQPNHSFFELVANLIDSYPSVEKIKAPLMASLWQQTQVRLLNWKQQTQKLTFTDLL 367 Query: 356 SRLDSAL-----RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-- 408 + LD AL + LA IR +P+AMIDEFQDTDP QYRIF +I+ + Sbjct: 368 TNLDQALAIQAQDETADNALAKRIRQLYPLAMIDEFQDTDPVQYRIFSQIYQPASQANNR 427 Query: 409 --LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 L++IGDPKQAIYAFRGADI+TY+ A+ EV A Y+L TN+RS+ M+ SVN LFS + Sbjct: 428 LGLIMIGDPKQAIYAFRGADIYTYLAAKKEVDAIYSLATNYRSSAAMIQSVNALFSTQGN 487 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW-----LMEGESCGVGDYQSTMAQV 521 F+ IPF+ V+ + +F KG+ Q AM+ + YQ MAQ+ Sbjct: 488 PFLVEGIPFVKVED--RQTQGQFYRKGKLQAAMQFMVAEDGFSDDAVLSSAQYQIQMAQL 545 Query: 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYL 581 A I L Q GEAL+ + PVR+ DI+VLV ++A ++ AL+ + SVYL Sbjct: 546 SAEHICQTLIQAQEGEALISSN----PVRSGDIAVLVSGYRQAQLMKAALSARGVASVYL 601 Query: 582 SNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVV 641 S+R SVF + EA+E+L +L A+++ +E+ +RSALAT ++G +++TLN D+ ++ Sbjct: 602 SDRGSVFASNEARELLLILNAILSQGKESAIRSALATHLLGWQVDELDTLNQDDVLYEDW 661 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 VE F Y IW K GV+PM+RAL+ A ++A LLA GERRLTD+LH+ E LQ+ + Sbjct: 662 VERFKTYFDIWHKDGVLPMIRALIQALSLAPKLLAGMQGERRLTDLLHLGEKLQQKAKEF 721 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNF 760 ES+ LVR+L+ I P+ ++ Q++RLESD LV+I+TIHKSKGLEYPLV+LPF T F Sbjct: 722 ESKEGLVRYLALAIQTPNGDSDEQKIRLESDDELVRIITIHKSKGLEYPLVYLPFAFTPF 781 Query: 761 RVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 R+ + + + + + ++ E E A ++RL YVALTR+ C +G A + Sbjct: 782 RINGKYALYHDDTHQLNYAPVPDEDQLNQHEKELYAGEVRLAYVALTRAREACFIGCAQV 841 Query: 821 VRRRGD-KKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE---ALCDDDIAWQTAQTGDNQ 876 + K+ + ++H S +G LL +G+ L + ++ D++ T + Sbjct: 842 GKAATKTKEAELNLHLSGVGSLLCEGKAVALGELESKLKGFLQAYDNEQMALTLLASEQS 901 Query: 877 PWQVNDVSTA------ELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD--- 927 +N S A E+ A+ +W V SYS L +A + Sbjct: 902 LLTLNAFSVADEDDENEVKAQHFSGHIERDWWVGSYSSLVVEQAELASEQEKEHSEPGLD 961 Query: 928 ----------------AAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-- 969 V + ++ + FP+GA PGTFLH L E +D Sbjct: 962 ESVTVSSEILEQASALDEAVLTDLDNEEPSCFTFPKGAKPGTFLHDLLEGNALLGELDKV 1021 Query: 970 --PNWVREKLELGGFE-------SQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 + ++ + + E +W+ VL W+ +L+ PL G++L L++ E Sbjct: 1022 SFADLLKTQYQAKMTEYFINQGYEEWQTVLFAWLEDILKTPLY-PGLNLLGLTSDKCFKE 1080 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 MEF+LP++ A QLD + RQ+D +S P ++ ++GMLKGFIDL+F HEG+Y++LD Sbjct: 1081 MEFFLPVAG-FNARQLDQIARQYDAVSLKAPAIQERPLKGMLKGFIDLLFEHEGKYFVLD 1139 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKSN +G Y MA A+ HRYDLQYQLYTLALHR L+ R+ +YDY+ H GGV Y Sbjct: 1140 YKSNHIGMSYDDYQAHHMAEAIAEHRYDLQYQLYTLALHRLLKQRLPNYDYDEHVGGVCY 1199 Query: 1141 LFLRGVDKEHPQ-----------QGIYTTRPNAGLIALMDEMFA 1173 LFLRG+ G++ TR + + +D+MF Sbjct: 1200 LFLRGMRPSKVGDESSNQKLMNETGVFKTRLSKEHVQALDDMFN 1243 >UniRef50_Q65TK4 RecB protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65TK4_MANSM Length = 1205 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 428/1231 (34%), Positives = 652/1231 (52%), Gaps = 99/1231 (8%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + LIEASAGTGKTFT+A+LYLRLLL G F +PL VE++LVVTFTEAAT ELR Sbjct: 1 MNSTLLIEASAGTGKTFTMASLYLRLLLQAG-ENCFFKPLEVEQILVVTFTEAATQELRE 59 Query: 75 RIRSNIHELRIACLRET----------TDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 RIR IH + + T+N + L+ + + A Q L +AE+ MD A Sbjct: 60 RIRHRIHLAKKQLTQYAENKNKQVFYGTENEILADLV-DSLELPVAIQRLKIAEQNMDLA 118 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A++TIHGFC+RML AF SG+ F QL++DE+ L + + WR H Y L + + Sbjct: 119 AIYTIHGFCRRMLVQYAFNSGIHFNLQLVKDETELLTRFSNELWREHFYNLSFSLTNFIH 178 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA------SRHAQIVARIDTVKQQWRD 238 K P +L+ I +++ E ++ P L + + I +K W + Sbjct: 179 RNLKSPTDVLQKIRKFVTSENLNVELNEPHLLQLEFNRFLSQYIEKNINEIKQLKTAWIE 238 Query: 239 AVGELDALIESSG----IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + E+ LIE + I + ++ +KI WA++ET+ + FSQ + Sbjct: 239 SENEIQRLIEKAKTQKLIKGASYKANHLPGRYEKIRQWAQDETDFSIPEPLSKYFSQSAV 298 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIR---DLVITRALAEIRETVAREKRRRGELGF 351 + E H +F+ D + S +++ + +R+ + R K E F Sbjct: 299 DSYLTKN-EPVNHAVFKQADSAVERAQSTELYVKVILYHYIQWMRDKLDRYKASHQEKSF 357 Query: 352 DDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--QPETA 408 DD+L L A+ S E G L IR ++P AMIDEFQDTD QQY+IF +I+ Q ET Sbjct: 358 DDLLRLLKEAVVSPEHGNELVKLIRYQYPFAMIDEFQDTDAQQYQIFSKIYIESAQAETG 417 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS-QTDDA 467 ++IGDPKQAIY FRGADIFTY+KA + H+TL N+RS ++++VN+LF+ + Sbjct: 418 FIMIGDPKQAIYQFRGADIFTYLKAAQQAKYHFTLGKNYRSEGNLIHAVNQLFNFSSAQP 477 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIR 527 F++ I F V+ RF+ + + + ++L E S +A+ CA I Sbjct: 478 FLYENIEFSSVEPGKA--QGRFILNEQQEAPLGVYLGEEPSD------EQLAETCANCIS 529 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 WLQ R A + + P+ DI+VLVR+ +EA +++AL +I SVYLS++ +V Sbjct: 530 QWLQLALRERAGIQTAEKFLPLEPKDIAVLVRNAKEAELIKNALQARQISSVYLSDKSNV 589 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDG 647 F+ EA+E+L +LQA + P E + +A+AT++ L DI+ + E W+ ++ F G Sbjct: 590 FDCNEAKELLLILQACLNPFSERNIVNAIATAIFCLTGADIQHIKQHETDWEKWIDRFVG 649 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHAL 707 Y++ WR++GV+ ML L A I + L+ GERR+TD+ H++ELLQEA T ES+ AL Sbjct: 650 YQRSWRQQGVLAMLHQLFLAEQIPQKLINMPNGERRVTDLFHLAELLQEATTLNESDAAL 709 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQE 764 +RW + I ++ +RLES++ LV+IVTIHKSKGLEY LVWLPFI+ Q Sbjct: 710 LRWFERQI-RGENTQDENIIRLESEQQLVKIVTIHKSKGLEYNLVWLPFISAKAKVNPQH 768 Query: 765 QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 + Y++ + D++A + ERLAE++RLLYVALTR+ +H ++ + + Sbjct: 769 ISTYYNAQAQAVQWDMDACHNDEVI--KERLAEEMRLLYVALTRAKYHLAMALPDNFTKN 826 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDV- 883 +AL L +GE A L + D Q + +Q +++ Sbjct: 827 ----------WNALLYALTRGEIGTQAKLTDEYQTKPLLDDFAQRISPANIHYYQTDEIQ 876 Query: 884 --------STAELNAKTLQRLPGDNWRVTSYSGLQQ------------------------ 911 + A+ A+ +W ++S++ L Q Sbjct: 877 GGGYQQKDNHAQYVAQEFHGKIERDWTISSFTSLTQMHEWNSQKGRHEAFSPIVTTESAV 936 Query: 912 -------RGHGIAQDLMPRLDVDAAGVASVVE--EPTLTPHQFPRGASPGTFLHSLFEDL 962 I +P+++ D + +V +P FP G + GT LH FE Sbjct: 937 NFSLILDEAKDIDLTFLPKINEDKNNFSDIVTGYRQGYSPFDFPHGINVGTALHRFFEKN 996 Query: 963 DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEM 1021 +F QP+ +V+ + +W+ L +WI A+L PL N ++L+QL ++ EM Sbjct: 997 EFNQPIIDEYVKNLCQTIQLSEEWKQPLIQWIEAILTTPLFNGEPLNLAQLDKKDCIKEM 1056 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 +FYL + + L++++ + P F +++GML+GFIDLVFRHE +YY+LDY Sbjct: 1057 QFYLKLEGRFKLHSFNRLLQKYHTI--KREPYLFDEIQGMLRGFIDLVFRHESKYYVLDY 1114 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSN+LG+D + Y + + M+ H YDLQY LYTLA+HRYL+ R+ DYDY+ HFGGVIY Sbjct: 1115 KSNFLGKDMAFYARSQLTDVMKNHHYDLQYLLYTLAIHRYLKQRVTDYDYDSHFGGVIYC 1174 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 FLRG++ +P GIY+ +P LI +D +F Sbjct: 1175 FLRGMNGRNPDYGIYSAKPARELIEGLDNLF 1205 >UniRef50_Q1N2R0 Exodeoxyribonuclease V beta chain n=1 Tax=Bermanella marisrubri RepID=Q1N2R0_9GAMM Length = 1184 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 409/1212 (33%), Positives = 637/1212 (52%), Gaps = 62/1212 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS + L L PL+G LIEASAGTGKTFTIAALYLRL+LG G P++ E +L Sbjct: 1 MS--PQKLSLLDAPLKGISLIEASAGTGKTFTIAALYLRLVLGHGC-----NPISPENIL 53 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACL-RETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 VVTFT+AAT ELRGRIR+ + + A ++ + +P LL+E+ D A + L A + Sbjct: 54 VVTFTKAATEELRGRIRNRLRQAYNAIQTQDESLDPFVFSLLKEL-DHTSALERLKDAVQ 112 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 MD AA++TIHGF Q++L+ + ES + E +LI D+ + A D WR+ YPL Sbjct: 113 IMDIAAIYTIHGFAQKVLSQYSVESHVDDEFELILDQQEIEMTAVNDVWRKFVYPLSEAE 172 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 +V + W P LLRD++ ++ + + + + + H + D Q W+D Sbjct: 173 LDIVLDAWGSPSVLLRDVSTLVRRDVEFKDSNIKNLQDIDVAHKRFKDAFDKFCQDWQDQ 232 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP---ESLEKFSQRFLED 296 I ++ + + + ++ T+ + + + F++ ++ Sbjct: 233 GQAFFNAI-----YDNEYASKSFTNHLSRRKQHLDDFTSGAYVKDIEKYIGYFTESGIKK 287 Query: 297 RTKAGGETPRHPLF-------EAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEL 349 GE H + A+ Q + L R IR + K+ + L Sbjct: 288 SVTKKGEPTDHEMILSFTKMHAALLQWQEQKQQATLLWKIRFTEAIRTRLDELKQAQSVL 347 Query: 350 GFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA- 408 DD+L ++ +L S E L + +FP+AM+DEFQDTD QYR+F +++ PE Sbjct: 348 CADDLLKQVLRSLGS--SESLCTLLCQQFPMAMVDEFQDTDSTQYRVFSKLYSETPEETG 405 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 +IGDPKQAIY FRGAD+FTY++A++EV ++L N+RS+P +V++VN LF D F Sbjct: 406 FFMIGDPKQAIYKFRGADVFTYIQAKTEVEREFSLQDNYRSSPSLVSAVNALFQCHDRPF 465 Query: 469 MFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIR 527 +F + IPF PV +A K+Q ++ + + + ++ +S G+ D ++ +A A Q+ Sbjct: 466 IFDDSIPFYPVGAASKSQLIQSRDIDNSACVFQTFDIDSDS-GIEDIRTEVAHGVAEQVS 524 Query: 528 DWLQAG--QRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 L +G Q + + DD R + + DI++LVRS +A V+ AL + +V+ ++ Sbjct: 525 VLLSSGLEQSTKVFDSDLDDYRDISSRDIAILVRSAHQARLVKQALDERGVAAVF-KGQE 583 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 S++ + EA + LL ++ + E + R+ALA + L+ + T E W+ +E Sbjct: 584 SLYNSAEALAVYELLNSLHS-LSEQSYRNALANPVWMLSLDQLATHLQHEVCWEEELELM 642 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH 705 ++IW K+G+MPML + +R + + A GERR+T+ LH++ELLQE ++L+ Sbjct: 643 YECKRIWIKQGIMPMLMHWLHSRGLPQQWFALTDGERRITNYLHMAELLQEQASRLQGMQ 702 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 L+ W L+ + Q+RLESD++LV IVT+H SKGLEYP+V+LP+ + Q Sbjct: 703 GLLTWFEHK-LQNTYQSEEAQLRLESDENLVSIVTVHSSKGLEYPVVFLPYAWSMSKQVD 761 Query: 766 AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 Y D + DL + V L E+LAE++RLLYV +TR+ + V Sbjct: 762 VIYFDEITQSLCCDLEDVHKDVRL--KEQLAEEVRLLYVGVTRASSQLYVTVPTHCD--- 816 Query: 826 DKKGDTDVHQSALGRLL-----QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 880 +KK ++ + S L +L K E A L I L + Q P+++ Sbjct: 817 NKKINSTLLASPLFHVLCGSNENKVEAAPADQLANAISTLEKK--SEQGVFAQQVLPYEL 874 Query: 881 NDVSTAELNAK----TLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS--V 934 + + W ++S+S L + H ++D + Sbjct: 875 TSFKAPDPEGDWQTTQFEGKIKQPWFMSSFSSLVRGLHVPHHQRFNFDEIDDDLIIPEVP 934 Query: 935 VEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP--VDPNWVREKLELGGFESQWEPVLTE 992 +++ L P FP+GA G FLH+LFED+DFT+P + V+E L GFE +W + E Sbjct: 935 LDKDILNPFTFPKGAHAGNFLHNLFEDIDFTRPMIDQVSTVQELLMRYGFEEKWLETVLE 994 Query: 993 WITAVLQAPLNE----TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS- 1047 W +L APL + +SLS L K VEMEFY P++ L S+ + L+R++ L Sbjct: 995 WSQKILHAPLQDQTLDKPISLSDLQPDQKSVEMEFYFPVNG-LSCSKFNALLRKYPVLGT 1053 Query: 1048 -AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 L+F ++GMLKGFIDL F +GRYY+LDYKSN+LG++ + Y + AM AM HR Sbjct: 1054 VQQVQDLDFDFLQGMLKGFIDLTFECQGRYYVLDYKSNFLGDELTHYHRNAMTQAMAEHR 1113 Query: 1107 YDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIA 1166 YD+Q LYTLALHR L+ + +Y+Y+ H GG YLFLRG+ E Q G + +PN LI Sbjct: 1114 YDVQLVLYTLALHRLLKLTLPNYNYDEHMGGGFYLFLRGISGES-QYGQFYHKPNRLLIE 1172 Query: 1167 LMDEMFAGMTLE 1178 +D M +G + Sbjct: 1173 ALDAMISGDNHD 1184 >UniRef50_Q1QYD3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYD3_CHRSD Length = 1269 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 480/1238 (38%), Positives = 643/1238 (51%), Gaps = 78/1238 (6%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLG---LGGSAAFPRPLTVEEL 59 + L LPL G LIEASAGTGKTFT+AALY+RL+LG + +PRPL E+ Sbjct: 10 AQPQPLVLEHLPLAGHHLIEASAGTGKTFTLAALYVRLVLGPLPGREACDYPRPLLPPEI 69 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLR--ETTDNPLYERLLEEIDDKAQ-----AAQ 112 LVVTFTEAATAELRGRIR+ + E R L E + + LL + + Q AA+ Sbjct: 70 LVVTFTEAATAELRGRIRARLKEARDWLLAPPEARHDDVLGALLTPLVEAGQTAVASAAK 129 Query: 113 WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHC 172 L A R MDEAA+FTIHGFCQRML +AF++G F +L++D S L + D+WR H Sbjct: 130 RLDQAARLMDEAAIFTIHGFCQRMLTRHAFDAGARFGAELLQDGSTLLTRVVEDYWRCHF 189 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD-----------ETLASR 221 YPL + + W+GP+AL + + L+ P + Sbjct: 190 YPLAAHWQREIRRRWEGPEALSQALQPLLKDARPQPLWWDGERVEAPASLTTLLGDAERA 249 Query: 222 HAQIVARIDTVKQQW--RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNS 279 A A D+++Q W G L+ ++R + + W Sbjct: 250 LAARQALEDSLRQAWDREAIAGCLNEAFSRGALNRNSYKPDELDTRLAAFEQWLATFEAD 309 Query: 280 YQLPESL--EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRALAE 334 +S SQ LE TK G + P HP F +D+L + ++ A Sbjct: 310 DGTTDSQGRFWLSQAKLEKATKKGHDVPTHPFFARLDELAETATPFDVLAPRLLAHARDT 369 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFP----VAMIDEFQDTD 390 + A EKRR+G F D+L LD+AL E+ A + R VA+IDEFQDTD Sbjct: 370 VAAMFAAEKRRQGLWEFGDLLQDLDAALDPEAAPEAAWRLAGRIRQALPVALIDEFQDTD 429 Query: 391 PQQYRIFRRIWH----HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTN 446 P QYRIF RI+ T LL+IGDPKQAIYAFRGADI TY+ AR E + +TL N Sbjct: 430 PLQYRIFSRIYRAPEADADTTTLLMIGDPKQAIYAFRGADIETYLAARRETPSRFTLTRN 489 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS+ MV +VN+LF++ F EIPF+ V + G+ L G+ A+ W Sbjct: 490 FRSSVAMVEAVNRLFARHPTPFGSDEIPFVEVAAKGQKARL-CNADGQEVAALGAWWPGD 548 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 E DYQ++MA A+++ L+ G + R VR +DI++LVR EA Sbjct: 549 ERHAKADYQASMASAARAEVQRALEGG---WHFVDEKGGQRDVRPADIAILVRKGSEALA 605 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 VR AL I SVYLS R SVF+T A E+L L +AV P ++ L++ALAT ++ N Sbjct: 606 VRRALAEGGIRSVYLSERASVFDTALAFELLQLFEAVAQPRQDARLKAALATRLLNDNPA 665 Query: 627 DIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTD 686 +ETL DE AW+ VE F Y + W++RGV+PMLRA+M +AE + A GER LTD Sbjct: 666 ALETLLADELAWEREVERFADYHRQWQRRGVLPMLRAVMRDFRVAERMGARDDGERALTD 725 Query: 687 ILHISELLQEAGTQLESEHALVRWLSQHILE--PDSNASSQQMRLESDKHLVQIVTIHKS 744 +LH+ EL Q +L+ EHAL+RW + ++E +A + RLESD+ LV++VTIHK+ Sbjct: 726 LLHLGELAQTVSARLDGEHALLRWWHRALVEGTRQLDAEAVSQRLESDEDLVKVVTIHKA 785 Query: 745 KGLEYPLVWLPFITNFRVQE-----QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDL 799 KGLEYP+V LPF+ ++R E L A E + AE RL ED+ Sbjct: 786 KGLEYPIVLLPFVCDYRPAEPERGTGLLEWRDPRHGRALVHGADDEQLAAAERARLDEDV 845 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA 859 RLLYVALTR+ C LGVA L R RG +H++ALGRLL A +R + A Sbjct: 846 RLLYVALTRAAHACRLGVAHLGRGRGTSGC---LHETALGRLLGCEADDQAHDVRERLAA 902 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQD 919 ++ + +V A +A+ D+W + SYS L Sbjct: 903 ----ALSVEACPAPPGHRLRVRHALPAVASARRFNGGIDDDWWIASYSALIVDARLAPAG 958 Query: 920 LMPRLDVDAA---------GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP 970 + DA V T FPRG PGTFLH L E +D + +P Sbjct: 959 EEASMTWDAPATLDVEVSREQDPVPRPAVRTLRDFPRGPRPGTFLHGLLEAVDLDRLREP 1018 Query: 971 N-------WVREKLELGGFESQWEPVLTEWITAVLQAPLN---ETGVSLSQLSARNKQVE 1020 V +L LGGFE +W P+L +W+ L P T + L L+A + E Sbjct: 1019 AYRDELQRLVSTRLHLGGFEPEWAPLLLDWLCTALPTPFPGHAGTEIRLDGLAA--WRPE 1076 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR-HEGRYYLL 1079 +EF+LP + A LD L+ F+PL P L ++ GMLKGFIDLVF +GR+Y+L Sbjct: 1077 LEFWLPAHQAWSAP-LDALVSAFEPLPEPRPRLAPRKLNGMLKGFIDLVFEAEDGRWYVL 1135 Query: 1080 DYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 D+KSN LG+ + Y +A+A AM HRYDLQY LY LALHR L R+ DYDY+ H GG Sbjct: 1136 DWKSNHLGDAPADYRPEALAEAMVEHRYDLQYVLYVLALHRLLTARLDDYDYDTHMGGAC 1195 Query: 1140 YLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 YLFLRGVD P QG++ RP LI +D G T Sbjct: 1196 YLFLRGVDGT-PGQGVFQRRPERRLIEALDAWLEGDTG 1232 >UniRef50_A1AQY7 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Bacteria RepID=A1AQY7_PELPD Length = 1203 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 415/1218 (34%), Positives = 611/1218 (50%), Gaps = 70/1218 (5%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 L+ L + L G LIEASAGTGKT+ IA LYLRL++ LT E++LVVT+ Sbjct: 1 MRELEHLGIELSGRNLIEASAGTGKTYAIACLYLRLVIESD--------LTPEQILVVTY 52 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE----EIDDKAQAAQWLLLAERQ 120 TEAAT ELRGRIRS I + + +P L++ E + A L A + Sbjct: 53 TEAATEELRGRIRSRIRQALDTFSGTVSKDPFLLGLVQKVNKEGPGEDIARNRLDRALKS 112 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 D A++FTIHGFC R L NAFESG L++ +LI D++ L + DFWRR + P + Sbjct: 113 FDLASIFTIHGFCLRALQDNAFESGSLYDTELITDQADLLQEVVDDFWRRTFFSEPAPLL 172 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 T P A + + G + P D ++ S + VK+ W ++ Sbjct: 173 GYALRTKLSP-AYSSTFLKGMLGNPKLEILPNFDLGSIPSLQEECETLFSLVKEIWLNSH 231 Query: 241 GELDALIES---SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 E+ LI S + +N + + A+A + + L K + Sbjct: 232 TEIRELIRSDKGLSRAKGAYNPDTLPPLFEAMDAYARSDNP-FDLFSDFSKLCTIGILKG 290 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 K G HP F+ +QL + LA E VA K R FDD+L+ Sbjct: 291 KKPTGAPLSHPFFDLCEQLRQRVGQRFLALKAELLAFAAEHVAARKSERNIRFFDDLLTS 350 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ 417 L AL G+ A +R ++ A+IDEFQDTDP Q+ IFR+I+ P L LIGDPKQ Sbjct: 351 LYEALGGPRGDDFALCLRQKYRAALIDEFQDTDPVQFDIFRKIYA-DPAHPLFLIGDPKQ 409 Query: 418 AIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 AIY+FRGADIF Y+KA + E +TL +NWRSAP ++ + N LF F+F EI + Sbjct: 410 AIYSFRGADIFAYLKAAAGVEATRRFTLTSNWRSAPALLAAFNALFDNDFKPFLFGEIAY 469 Query: 476 IPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD----YQSTMAQVCAAQIRDWLQ 531 V S + + R + +++W + + G ++ AA+I L+ Sbjct: 470 HSVASGLEEEGNRLTWAEADDAPLQLWCVPPDEEGKASNVGRANKSVPMAVAAEIARLLR 529 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 AG GEAL+ D RPV I+V+VRS ++A +++AL L IPSV S+ S+F T Sbjct: 530 AGMAGEALI----DGRPVLPEHIAVIVRSHRQAGYIQEALKNLSIPSVMRSDA-SIFTTR 584 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI 651 EA+++ LL A+ P E LR+AL T + GL DI TL +E W+ + +F Y QI Sbjct: 585 EARQVCTLLAALAAPGNEWKLRAALVTDIFGLTGDDIATLLEEEPLWEEWLSKFQEYHQI 644 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRW 710 W +RG M M++ L+S + LL GERRLT++LH E+L A + L W Sbjct: 645 WLERGFMVMVQTLLSREGVRGRLLRKPDGERRLTNLLHCCEILHAASQERSLGPEGLAVW 704 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 + I D++ Q+RLE+D+ V+I+TIH SKGLEYP+V+ PF+ ++ Sbjct: 705 FGERISAGDAS-EGYQIRLETDEKAVKILTIHVSKGLEYPIVFCPFLWAGVRSDEEVVTF 763 Query: 771 RHSFEAVLDLNAAPE--SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 F V D +A + LA+ E LAE+LRLLYVALTR+ + C L +V G + Sbjct: 764 HDDFRLVKDYGSADQELHRVLAQKESLAENLRLLYVALTRAKFRCYLVTGKIVDSTGRNR 823 Query: 829 GDTD-----VHQSA-----------LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 +T H SA LG+ ++K ++ + A D I+ + Sbjct: 824 PETSPLAYLFHASATTRNADDTVGQLGQEVKKLSAEEMEQQLRAVAARQQDAISVSSMPE 883 Query: 873 G-DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV 931 + ++ L+ K + +WRV+S++ L H ++ +P D A Sbjct: 884 AGGAERYEPFHDGGERLSEKKFNAMIERDWRVSSFTSLA--SHDLSTTELPDRDEAGAKE 941 Query: 932 ASVVEEPTLTP-----HQFPRGASPGTFLHSLFEDLDF---TQPVDPNWVREKLELGGFE 983 ++ P P FP+GA G FLH +FE LDF + + V L+ F Sbjct: 942 TALPPLPEADPREKSIFTFPKGAHAGIFLHEIFEKLDFSGSSGEKTTDLVAACLKKHCFG 1001 Query: 984 SQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 ++W+ +++ I V+ + SLS L E+EF+ P+ + + ++ L + Sbjct: 1002 AEWQSTISDMIENVVSTQFSAPEGPFSLSDLRQGKWLAELEFFFPL-KFVTSNILKECLG 1060 Query: 1042 QFDP------LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 + L A L F +GM++GF+D+VF H GR+YL+D+KSN LG AY + Sbjct: 1061 SWSSGCTAVNLQALAQSLRFRPAKGMVRGFMDMVFEHGGRFYLVDWKSNHLGYRVEAYGE 1120 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ-G 1154 +A+ +AM + Y LQY LYT+AL+RYL RI +Y YE HFGGV+YLFLRG+D+E + G Sbjct: 1121 KALTSAMDQNLYSLQYLLYTVALNRYLSLRIKEYRYETHFGGVLYLFLRGMDRERGEAFG 1180 Query: 1155 IYTTRPNAGLIALMDEMF 1172 ++ P AGLI + Sbjct: 1181 VFRDTPPAGLIHEVTNCL 1198 >UniRef50_C8KZ30 Exodeoxyribonuclease V beta chain n=2 Tax=Actinobacillus minor RepID=C8KZ30_9PAST Length = 1204 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 421/1228 (34%), Positives = 646/1228 (52%), Gaps = 83/1228 (6%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 +TLDP+ LPL LIEASAGTGKT TI LYLRLLLGLG + +PLTV ++LVVT Sbjct: 2 TMKTLDPITLPLNCSSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVT 61 Query: 64 FTEAATAELRGRIRSNIHELRIACLR-----ETTDNPLYERLLEEIDDKAQAAQWLLLAE 118 FT+AAT ELR RIR NI ET + +E+L E++++K +A L +AE Sbjct: 62 FTKAATEELRERIRENIQACYTFFQERLSGKETQSDDFFEQLFEQVENKEEALLRLRIAE 121 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 R++D A+VFTIH FCQ+ML AF+SG+ F+ +L D+S L + + WR YP+ + Sbjct: 122 REIDLASVFTIHSFCQKMLFQFAFDSGVRFDIELKADQSELMLRLAQEVWREQFYPMGLK 181 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD-ETLASRHAQIVARIDTVKQQWR 237 Q++ + K PQ L+ I YL P + + ++ + +K WR Sbjct: 182 ETQIIAQELKTPQEALKLIRSYLNDALPELGKQQQIFSQPISDYLNEYQRFFTELKDYWR 241 Query: 238 DAVGELDALI-----------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 + ++ I E + R+ + ++ WI + W E +++S+ + Sbjct: 242 EYRADIVTPIQNELEKKYKTGEKKALSRQSYKKNLVENWIKTVDQWVESDSSSFP-ANTF 300 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS-----IRDLVITRALAEIRETVAR 341 E+F Q+ L ++ + GGE P F L + I+ +++ L +RE +A Sbjct: 301 ERFCQQMLIEKAEEGGEPLTSPHFAKNQAFLTAYQTQFEGKIKPVLLYHFLLSLREKIAE 360 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 + E GFDD+L L+ AL+ E GE LAA IR +FP AMIDEFQDTD QY IFR+I+ Sbjct: 361 HQIHYAERGFDDLLKMLNQALKGERGEQLAAQIRAQFPFAMIDEFQDTDKTQYDIFRQIF 420 Query: 402 HHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 + ++IGDPKQ+IY FRGADIFTY++A ++ TL NWRS P +V SVN+ Sbjct: 421 MSEKAENQGFIMIGDPKQSIYKFRGADIFTYLEAANQAQEKRTLSKNWRSFPKVVESVNQ 480 Query: 460 LFS----QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 LFS + F+ ++I F PV++ F F+ + +L + Sbjct: 481 LFSFPQHKEASPFLHKDIHFQPVRAK------EFTFQLMGSEHVICYLQTEFD------E 528 Query: 516 STMAQVCAAQIRDWLQ--AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 A+ CAAQI+ L+ + +N +A DI+VLVRSR +A+ V++AL Sbjct: 529 EQAAEHCAAQIQLQLKAMQEKGFGVEELNDSSKNIFQAKDIAVLVRSRNQASLVKNALAQ 588 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 I SV+LS + SV+++ A ++ +L+A + P + TL SAL + + GL A ++ L + Sbjct: 589 RGIKSVFLSEKSSVYQSEVAYDLAVILKACLHPYHQKTLLSALGSHLWGLTAFELYQLKH 648 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 DE W+ V F Y+Q+W+K+GV+ ML L I + L + ER +TD+ H++EL Sbjct: 649 DESVWESYVANFVVYQQLWQKQGVLAMLHQLFLNEGIIQRLKSRENAERLITDLFHLAEL 708 Query: 694 LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 LQ ++E+E AL+RW +H LE D + +RLES+++LV+IVTIH SKGL+YP+VW Sbjct: 709 LQSGSQEVENETALLRWYERH-LEDDEENDAYTLRLESEENLVKIVTIHGSKGLQYPVVW 767 Query: 754 LPFITNFRVQEQ----AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 LPF+ + + A YHD + L AEDLRLLYVALTR+ Sbjct: 768 LPFVGKNSYENRNGGLATYHDEEDQKQWDFNEKDERIQRLRNQAEFAEDLRLLYVALTRA 827 Query: 810 VWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA---LCDDDIA 866 + +L + + +A+ LL GE I + +I Sbjct: 828 EYQMNLILPAHFSK----------GWNAMHYLLSNGELALDNREEAAISTEDYIKAKNIP 877 Query: 867 WQTAQTGDNQP---WQVNDVSTAELNAKTLQ-RLPGDNWRVTSYSGL------QQRGHGI 916 + + W+ L+ + + R+P ++TS++ L +++ Sbjct: 878 CKIEHLPEQPRFDDWRAEADQQEVLSVQPFEHRIPQREGQITSFTALYSYHEWKRQSKDH 937 Query: 917 AQ------DLMPRLDVDAAGVASVVE----EPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 + DL D +G+ E + L + FP G G LH FE DF Q Sbjct: 938 NEIGSLLTDLAQDYDQSVSGLTQNDELEQLDTALNAYHFPHGTKIGNTLHQFFEHYDFQQ 997 Query: 967 PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 V+ + E + W + +W V P E VSLS+++ ++ E +F+L Sbjct: 998 AVEKTEIIALCEKLALDEVWVEPICQWFEKVRTTPFGEDLVSLSEIAQESRLNEWQFFLR 1057 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 ++ S+L+ L++++ L+ PPL+ + G ++GFID + + +G++Y++DYKSN+L Sbjct: 1058 LNNEDWVSELNHLLKEYSELAKHLPPLKLPDLEGFVRGFIDCIAKVKGKFYVIDYKSNFL 1117 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRG 1145 G Y+ + +A M +RYDLQY LYTLA+HRYL+ R+ + YDY+ FGGV YLFLRG Sbjct: 1118 GYLPQDYSTENLAKTMGQYRYDLQYLLYTLAVHRYLKGRLGEQYDYQRDFGGVAYLFLRG 1177 Query: 1146 VDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 ++ PQ G+Y +P+ LI +D +F Sbjct: 1178 MNGS-PQSGVYFDKPSLALIEGLDRLFN 1204 >UniRef50_Q74CY7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74CY7_GEOSL Length = 1204 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 403/1218 (33%), Positives = 572/1218 (46%), Gaps = 58/1218 (4%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + D L + L G L+EASAGTGKTF IA LYLRL++ L + +L Sbjct: 1 MTSL-RPHDNLTVELSGHNLVEASAGTGKTFAIACLYLRLVVEG-------EGLLPDNIL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLL--EEIDDKAQAAQWLLLAE 118 VVTFTEAAT ELR RIR + + R + +RL E A A + A Sbjct: 53 VVTFTEAATKELRARIRQRLRQARDRFAGGGAPDEFLDRLALGERWPGHATALARIDSAL 112 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 + D AA+ TIHGFC R L NAFESG LF+ +L D+ L Q DFWR H + Sbjct: 113 QTFDCAAISTIHGFCLRALQENAFESGSLFDTELAADQEPLLRQVADDFWRHHFFGADAP 172 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA-QIVARIDTVKQQWR 237 + + P+ L + P + P A R A +I + WR Sbjct: 173 LLPLALGRRWSPEELAAFLRNIAGK--PHLAVEPVWHSGEADRVAGEIRDAFAALSSLWR 230 Query: 238 DAVGELDALIES---SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 E+ A++ + R ++ + + +A Y L +KF+ FL Sbjct: 231 TQRAEIAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAGADP-YALFAGFDKFTTGFL 289 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDM 354 + + PRH F+ D+L L+ A RE +A K +R G+DD+ Sbjct: 290 AGQRLKKADPPRHDCFDLCDRLARLTSQRLLLLKAEFAARGRERLAALKAQRNVRGYDDL 349 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGD 414 L+ L +AL G LA +R R+ A+IDEFQDTD QYRIFR ++ L LIGD Sbjct: 350 LTDLHAALGGPGGAALADRLRERYRAALIDEFQDTDQVQYRIFRAVFSGGAVP-LFLIGD 408 Query: 415 PKQAIYAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFS-QTDDAFMFR 471 PKQAIY+FRGAD+F Y++AR E+ +T+D NWRS P MV +V+ LF + F+ Sbjct: 409 PKQAIYSFRGADVFAYLEARQEIPAERRFTMDRNWRSTPEMVEAVSSLFRLGGEHPFLAG 468 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-----EGESCGVGDYQSTMAQVCAAQI 526 +I F PV +A + F +++W + + +G + + A +I Sbjct: 469 DIAFPPVTAARRQGC---SFGDRDPAPLQLWFFRRGESDRDCINLGTGRQRIVTAVADEI 525 Query: 527 RDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 L G+ G A L + D +P+ D++V+VRS EA V+ AL IPSV + + D Sbjct: 526 SGLLADGRAGTACLEDEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRERGIPSV-VQSAD 584 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 S+FET EA E+ ++ AV P E +R+AL T++ GLN D+ L E AW+ + F Sbjct: 585 SLFETREAGEVWTVMGAVAEPGNEGRVRAALVTALFGLNGNDLALLMEQEAAWEARIAAF 644 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SE 704 YR +WR++G M M RAL+ + E L GERRLT++ H +E+L +A + Sbjct: 645 RDYRDLWREQGFMTMFRALLDREGVRERCLPLPDGERRLTNLRHCAEVLHQAAVERRLGP 704 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 AL W + + P Q+RLESD V+IVT+H SKGLEYP+V+ PF+ + Sbjct: 705 DALTAWFGERVSVPPPGED-YQIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRDD 763 Query: 765 QAF-YHDRHSFEAVLDLNAAPESVDLAEA--ERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 + V D A E LAE+LRLLYVALTR+ L Sbjct: 764 GDLTLCHEEGYRLVADFGTDRRDERQRRARTEALAENLRLLYVALTRARCRAYLVWGKFR 823 Query: 822 RRRGDKKGDT---------DVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 G + L L+K Q + IA Sbjct: 824 GAETSAPGWLLHGSRPDGGGDPVALLEGTLKKATDQTLLERLDHLATASGGGIAVTEDPC 883 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ---QRGHGIAQDLMPRLDVDAA 929 D P + A L + + WRV S++ + + ++ Sbjct: 884 PDRLPRFRPAMGEAPLVCRDFRGDIDAGWRVASFTSFASGHREPAELPDRDQTPPELPPD 943 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD---PNWVREKLELGGFESQW 986 + P + FPRG G FLH LFE LDF D + VR +LE G +QW Sbjct: 944 AASDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLDFAVAGDDTVRDLVRRELERNGHGAQW 1003 Query: 987 EPVLTEWITAVLQAPLNETG--VSLSQLSARNKQVEMEFYLPI-----SEPLIASQLDTL 1039 ++ + VL PL G L+ L+ + E+EFY P+ ++ + Sbjct: 1004 LDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSWLAELEFYFPLRFVRDAQVATILAGAGV 1063 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + Q L A + F + RGM++GF+DLVFRH GRYYL+D+KSN LG + Y + + Sbjct: 1064 LPQGADLGAVARRIAFGEARGMVRGFVDLVFRHSGRYYLIDWKSNHLGNRAEDYGPERLC 1123 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTR 1159 M+ Y LQY LYT+AL+R+L R+ Y YE HFGGV YLFLRG+D E P G+Y Sbjct: 1124 REMERSLYPLQYLLYTVALNRFLERRLPGYRYEEHFGGVFYLFLRGIDPERPALGVYHDL 1183 Query: 1160 PNAGLIALMDEMFAGMTL 1177 P L+ + + AG Sbjct: 1184 PRPDLVRALTDCLAGREG 1201 >UniRef50_Q3IJ14 Exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=2 Tax=Alteromonadales RepID=Q3IJ14_PSEHT Length = 1213 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 435/1233 (35%), Positives = 635/1233 (51%), Gaps = 85/1233 (6%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLG----LGGSAAFPRPLTVEELL 60 + L+PL +PL G+ LIEASAGTGKT+TI LYLR LLG ++ +PL+VE++L Sbjct: 1 MQALNPLTMPLTGQSLIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT+AAT E++ R+R+ I R A L + + L ++ +DDK +A L A + Sbjct: 61 VVTFTDAATQEIKDRVRNRIITARDALLGQDPKDELIAGVIAAVDDKHRAFDLLDAAAKS 120 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTIHGFCQRML +AFESG+ F + I DE + + DFWR YPL +E Sbjct: 121 MDEAAIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKEKT 180 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + + P+AL ++ L I D+ + + R+ K+ + Sbjct: 181 DAILGVFAAPEALFGKVSSILNKANAQITPQVNLDDVW-QARDEYIIRVPAFKKAVLE-- 237 Query: 241 GELDALIESSGIDRRK----FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 E A I+ SG+ K + E S E + + + Sbjct: 238 QEFIAAIKGSGLSGSKTPGRKGSLAALEAFCLGGDLFFEFGTSKYSFEVWSSENLSDISN 297 Query: 297 RTKAGGETPRHPLFEAIDQLLAEPLS----IRDLVITRALAEIRETVAREKRRRGELGFD 352 K HPL DQL A + + V+ A ++ V + K+ + + D Sbjct: 298 -YKKNQPLFTHPLLTEFDQLAALNNTINQGLAIAVVQHAAKWVKAAVIKRKQEQSVITPD 356 Query: 353 DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLI 412 D+LS L SAL +E G VLA I FPVAMIDEFQDTDP QY IF +I+ Q T L +I Sbjct: 357 DLLSNLHSALNNEQGNVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYQ-QEHTTLAMI 415 Query: 413 GDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 GDPKQAIY FRGADIFTY+ A+ V +TL TN+RS+ +V+SVN LF + ++F++ Sbjct: 416 GDPKQAIYGFRGADIFTYIGAKEAVQKQQQFTLGTNFRSSSDVVSSVNSLFGKHANSFIY 475 Query: 471 -REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG-------ESCGVGDYQSTMAQVC 522 IPF V + GK F+ G+ A + + + G Q +A Sbjct: 476 NDAIPFNAVAAKGKKADESFLIDGQPATAFEFCVFSDTAADEKNKPTGKAIGQQHLATFF 535 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A +I L ++G A + +PV A+DI +LVR R EA ++ AL+ +I SVYLS Sbjct: 536 ANKIVTLLTQAEQGRACIGE----KPVSAADICILVRDRVEAQIMKKALSTAKIASVYLS 591 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 R+SVF + +L L A+ E+ LR LA + L+ +I L +DE W + Sbjct: 592 -RESVFSQELSHHLLNFLTALHGQYDESLLRGVLAGPLFCLSYNEIYALADDEAQWQEHL 650 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-AGGERRLTDILHISELLQEAGTQL 701 F IW K+G M ML LMS ++ ER LTD H+ E+LQ+ +L Sbjct: 651 NFFAQLSHIWNKQGAMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIEL 710 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR 761 E L+RW +Q + + D + Q+RLESD +LV+IVT+H SKGLEYPLV++PF + +R Sbjct: 711 EGTLRLLRWFAQKVSQQD--GETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYR 768 Query: 762 VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLV 821 ++A YH+ + + DL+ +++ AE ERLAEDLRLLYVALTR+V C++G+ + Sbjct: 769 ETKEALYHN--NGALIYDLSKGDDALQKAEQERLAEDLRLLYVALTRAVHFCAIGMYNIG 826 Query: 822 RRRGDKKGDTDVHQSALGRLLQKG-EPQDAAGLRTCIEALCDDDIAW-------QTAQTG 873 + + + + SALG +L G E + R + C + + Sbjct: 827 QGQSSR---LAIQSSALGHVLFAGLEITSSQIWRNHLADFCSEHTGMDYQQFTSEDLLAQ 883 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS 933 + + + L+ + NWR TS+S L + H + + Sbjct: 884 GTLSFNNSADAQQTLSINNVTANIERNWRATSFSALSFKKHIDHLAPGRSDEDHEKDEFA 943 Query: 934 VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD---------PNWVREKLELGGFES 984 V E + + FP+GA PG+ LH +FE +DFT P++ ++ LE Sbjct: 944 VQEGEAPSVYSFPKGAKPGSCLHEIFEQIDFTSPIEHPVNKEHNLAEVIKRSLEKYHISE 1003 Query: 985 QWEPVLTEWITAVLQAPLNETG----------------------VSLSQLSARNKQVEME 1022 W+ + +WI VL PLN+ +SLSQL+ + VEME Sbjct: 1004 HWQDITEQWILDVLACPLNDDSNANINTSGNDTSANSSSVNSNGLSLSQLAPSDCLVEME 1063 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 F LP+ + L A QL+ ++ + LEF V+G+LKGFIDL+F H+G+YY+LDYK Sbjct: 1064 FNLPL-KSLSAPQLNEILIKH--FGFEHSKLEFSHVKGLLKGFIDLIFCHQGKYYILDYK 1120 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 SN+LG +++ Y + AM +H+Y LQY +YT+ALHR L+ RIADY E H GGV Y F Sbjct: 1121 SNYLGSNAADYEHDMLEQAMSSHQYHLQYLIYTVALHRLLKQRIADYSVETHLGGVYYTF 1180 Query: 1143 LRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 LRG+ QG+Y + + ++D +F+ Sbjct: 1181 LRGMP---AGQGVYFKKLTTEQVTILDGLFSQG 1210 >UniRef50_Q2SQD6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD6_HAHCH Length = 1181 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 429/1214 (35%), Positives = 617/1214 (50%), Gaps = 76/1214 (6%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 LDP+ +PLQG +LIEASAGTGKT+TI LYLRLLL R L V ++LVVTF Sbjct: 1 MRPLDPIAIPLQGVQLIEASAGTGKTYTITTLYLRLLL--------ERQLDVRQILVVTF 52 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYE-RLLEEIDDKAQAAQWLLLAERQMDE 123 T AAT ELR RIR I E+ + + + + A L A MDE Sbjct: 53 TRAATEELRTRIRQRIREVMQTLQAPPETDIAEWLQPWRDPERNGDALALLQQALLNMDE 112 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 A++FTIHGFCQR L NAFESG+LF+ +L ED L QA D WR+ YP R +A++ Sbjct: 113 ASIFTIHGFCQRALQDNAFESGLLFDLRLQEDLGPLLQQAAEDTWRKLFYP-DRLLAELA 171 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 W P +L + YL + P D + L+ +K QWR +L Sbjct: 172 QAKWGEPADMLNGLRSYLAQGDLELIRPDVDPQALSHLAG-------ALKAQWRQQGDDL 224 Query: 244 DALIESSGIDR------RKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK----FSQRF 293 A + + ++ + + I ++ W+ E P + Sbjct: 225 TAAVREAAENKILGRAEKTYREDKLNDAILSLTIWSRTEEQMTLPPAAALFSQSVLDASV 284 Query: 294 LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDD 353 L+ G P+H F A+DQ L + + ++ L ++ + R K + LGFDD Sbjct: 285 LKKAADKGLGAPQHAFFTALDQFLTQQTQLDAWLVGATLTAFKDVLQRLKTQAEILGFDD 344 Query: 354 MLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLI 412 ++ L AL + +G L A++ R+PVA+IDEFQDTDP QYRIF ++ L +I Sbjct: 345 LIGSLKDALAAATGPQLRQALQRRYPVALIDEFQDTDPSQYRIFSSLYDAADGNATLFMI 404 Query: 413 GDPKQAIYAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF 470 GDPKQAIY+FRGADI+ Y++A+ YT+DTNWRS +V +VN LF Q + F+F Sbjct: 405 GDPKQAIYSFRGADIYAYLQAKQRTPQDNRYTMDTNWRSRKELVAAVNGLFEQCANPFLF 464 Query: 471 R-EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----CGVGDYQSTMAQVCAAQ 525 +I FIPV++AG A ++ WL+ E + +AQ+ A++ Sbjct: 465 AGDIEFIPVQAAGAADASVLTLDDVPVTPLQAWLLGREDGGKTISKDQARPQLAQITASE 524 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 I +WL G+ G A L RP+ A DI+VLVR ++A + + L+ + + SV+L+ R+ Sbjct: 525 IANWLNLGECGRARLGE----RPLSAGDIAVLVRDNKQARIMSEKLSAVGVSSVFLT-RE 579 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 SV+++ EA ++L LL+A++ P E LR+AL T G A ++ETL DE W+ ++ Sbjct: 580 SVYQSEEATDLLRLLRALLEPNDERRLRAALVTLSWGWTAAELETLARDEQRWENMLTSL 639 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH 705 R+ W+ G MPM + + ++A LL GERRLT++L ++ELLQ+AG + Sbjct: 640 HQLREEWQDAGFMPMFQKWLQNFSVAARLLGLPEGERRLTNLLQLAELLQQAGRDYPTPE 699 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 L+ W + + D Q+RLESD+ LV+IVTIH SKGLEYPLV+LPF+ R + Sbjct: 700 RLLAWYQGQLEQADGRGDEHQLRLESDEALVKIVTIHSSKGLEYPLVFLPFLGFGRSGKD 759 Query: 766 AFYH---DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 + VLDL+ + AE ERLAEDLRLLYVALTR+ C + Sbjct: 760 DYLMCHDPEREHRLVLDLSGGDRLREQAERERLAEDLRLLYVALTRAKQLCVWAWGAV-- 817 Query: 823 RRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA-------------WQT 869 + +A+ LL G T ++ L D +A W Sbjct: 818 --------NEFQYAAMAWLLYGGATGSLTDWLTSLKNLDDTQLAEPLTRLAAQTDFYWSP 869 Query: 870 AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAA 929 A +Q Q + + + A++ QR NWR++SYS L G G + Sbjct: 870 APEPVHQRHQPGEGA-GQWRARSAQRTVEQNWRLSSYSQLAAGGGGRHSEEPLDEAEATL 928 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQW 986 V ++ QFP+GA G H + E++ F L+ GF +W Sbjct: 929 EVQPRLQPDVSDIFQFPKGAWAGQCFHHILENMPFQAESAEILHELTSHSLQQHGFGEEW 988 Query: 987 EPVLTEWITAVLQAPLNETG---VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 + E + V+ PL + G SLSQL N QVEMEF P++ + ++L + + Sbjct: 989 VACVAEQLWQVVNTPLRQNGVTPFSLSQLDKANMQVEMEFLFPVT-LIQQARLARFLADY 1047 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 S L G++ GFIDL F+HEGR+Y+ DYK +WLGE +Y + + Sbjct: 1048 SG-SEAPVNLNVAANEGLMHGFIDLTFQHEGRFYIADYKGSWLGEKRESYAPDNLRNEIL 1106 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK-EHPQQGIYTTRPNA 1162 AHRYDLQY +YTLALHRYL+ + YDYE HFGGV YLFLRG+ + P+ G++ RP+ Sbjct: 1107 AHRYDLQYLIYTLALHRYLQRSLPAYDYETHFGGVYYLFLRGMHSQQQPELGVFFDRPSR 1166 Query: 1163 GLIALMDEMFAGMT 1176 +A E+ G Sbjct: 1167 EAVAAFAEILQGEP 1180 >UniRef50_B0BTM4 Exodeoxyribonuclease V, beta subunit n=6 Tax=Pasteurellaceae RepID=B0BTM4_ACTPJ Length = 1202 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 436/1232 (35%), Positives = 620/1232 (50%), Gaps = 93/1232 (7%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 +TL P+ LPL LIEASAGTGKTFT+A LYLRLLLG+G ++ LTVE++LVVTF Sbjct: 1 MKTLSPIELPLNCTALIEASAGTGKTFTMANLYLRLLLGVGCAS-----LTVEQILVVTF 55 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTD-----NPLYERLLEEIDDKAQAAQWLLLAER 119 T+AAT ELR RIR NI R + N + +L ++I+ +A L +AER Sbjct: 56 TKAATEELRDRIRRNIKACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAER 115 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 ++D A++FTIH FCQ+ML AF+SGM F+ L DES L + + WR YP+ Sbjct: 116 EIDLASIFTIHSFCQKMLFQFAFDSGMRFDNDLQPDESDLLRRLSEEVWREMFYPMGLTE 175 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDE-TLASRHAQIVARIDTVKQQWRD 238 V E P I ++ E P + LA A + + K+ W Sbjct: 176 TAAVAEYLGTPNNAFAAIRAFVSAELPSLSDEQHWLNGELAVYLAALQHFLADAKRHWSA 235 Query: 239 AVGELDALIE-----------SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 E+ LIE ++RR + KW + WA SY E E Sbjct: 236 HGEEISRLIESELAKKYKTGEKKALNRRSYQTRYLEKWRASVDEWAASSL-SYLPEEQFE 294 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE-----PLSIRDLVITRALAEIRETVARE 342 +F Q FL ++ + G E HP F Q+L + L++ + L +R +A Sbjct: 295 RFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQQFANKQKPLLLYQFLLAVRTKLADY 354 Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 K E F+DML+ L+ AL +E G LAA IR +FP AMIDEFQDTD +QY IF +I+ Sbjct: 355 KATHSEKSFNDMLTLLNQALNAERGAELAAQIRAQFPFAMIDEFQDTDKEQYEIFHKIFM 414 Query: 403 HQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKL 460 + T ++IGDPKQ+IY FRGADIFTY+ A + TL NWRS P +V++ N+L Sbjct: 415 QETHTNHGFIMIGDPKQSIYKFRGADIFTYLTASQQAQQKRTLAKNWRSLPPIVSATNRL 474 Query: 461 FSQTDD----AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 F + F+++ I F V++ L + +L + Sbjct: 475 FEFPEAAENSPFLYQGIQFHSVEAKASEAELIGAD------YVNCYLQAKFDEKLA---- 524 Query: 517 TMAQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 A+ CA QI+ L +AG+ G ++ +A DI++LVRS +A ++ AL Sbjct: 525 --AKQCAYQIQQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAE 582 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 L I SV+LS ++SV+++ A+E+LW+L A + P + L SAL T++ GL+A +I L N Sbjct: 583 LGIRSVFLSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKN 642 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA-GGERRLTDILHISE 692 E WD V F Y+QIW+++G++PML L I E L A +RRLTD+LH++E Sbjct: 643 SELQWDEQVGRFITYQQIWQQQGILPMLHKLFMQEGIIERLRANPRDSDRRLTDLLHLTE 702 Query: 693 LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 LLQ A LE+E ALVRW + + + DS +RLES++ L++IVTIH SKGL+YP+V Sbjct: 703 LLQNAMPSLENESALVRWYERQLAKIDST-EEHILRLESEEELIKIVTIHGSKGLQYPIV 761 Query: 753 WLPFITNFRV----QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTR 808 WLPFI A Y D + + L + E LAEDLRLLYVA+TR Sbjct: 762 WLPFIGKKNQGAKASNLAIYRDEQGLAHWYFGKPSEQVQALMDREELAEDLRLLYVAVTR 821 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI---EALCDDDI 865 + +L + +A+ LL GE + I E L I Sbjct: 822 AESQLNLILPQRFED----------GWNAVHYLLSNGEIGLDKSYKAEISTSEYLQQKGI 871 Query: 866 AWQTAQTGD---NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH-------- 914 Q + + N W+ + L+A VTS+S L Q+ Sbjct: 872 DCQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQHHTG 931 Query: 915 ------------GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL 962 Q + L+ D E + +QFP G LHS FE Sbjct: 932 YSMPKAFESAGQDYDQQQVLTLETDNLFALDNEETNAYSSYQFPHSTKVGNILHSFFEHS 991 Query: 963 DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEME 1022 DF Q VD + E G + W L +W VL P +ET +L + + E + Sbjct: 992 DFQQAVDFEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRLNEWQ 1051 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 FYL + +L+ L++Q+ +SA P L Q+ G L+GF+D + + ++YL+DYK Sbjct: 1052 FYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYLIDYK 1111 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYL 1141 SN+LG + Y++Q + + +RYDLQY LYTLALHRYLR R+ + Y+YE FGGV YL Sbjct: 1112 SNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHRYLRVRLGEQYEYERDFGGVAYL 1171 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 FLRG++ G++ +P LI MDE+F Sbjct: 1172 FLRGMNGTQ-NSGVFFEKPCKQLIEGMDELFG 1202 >UniRef50_Q0I3D6 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Histophilus somni RepID=Q0I3D6_HAES1 Length = 1216 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 394/1229 (32%), Positives = 637/1229 (51%), Gaps = 91/1229 (7%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V + +P+ PL LIEASAGTGKT +I +LY+RLLL G F + L V+++LVVT Sbjct: 19 VFQPFNPISTPLSAVSLIEASAGTGKTHSIVSLYIRLLLQAG-ENNFSQALEVDQILVVT 77 Query: 64 FTEAATAELRGRIRSNIHELRIACLR-------ETTDNPLYERLLEEIDDKAQAAQWLLL 116 +TE AT EL+ RIR I++ + A ++ ++ + LL I D A L L Sbjct: 78 YTEMATQELKQRIRERIYQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTL 137 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 AER +D +AV TIH FC+R+L AF SG+ F +L+ DES L + + WR + Y P Sbjct: 138 AERNLDISAVSTIHSFCRRVLMQYAFNSGVHFNMELVSDESELIQRLANELWRENFYHQP 197 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVI-----KAPPPDDETLASRHAQIVARIDT 231 +A +F+ P+ L+ + +YL V + L ++ +++I Sbjct: 198 LSVANFIFKKLGSPKQLVSYVYKYLSQPPKVNTQKPHLLEISLQQFLHTQVEPQLSKIHQ 257 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 KQ+W + L L+ +K+ + +K+ WAE E Q PE+ + F Q Sbjct: 258 FKQRWLENEKALRELVA-----LKKWRKDWFESRFNKMRVWAENE--DIQQPEAAKYFYQ 310 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 L+ + L + + + + +++ + E+ + K + GF Sbjct: 311 LELDKKEPLVSHDLFSELENLVTNEVTQISNNFSVLLYHCVHELNRKIMDYKLTHQQKGF 370 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA--L 409 DD+L + +AL G+ LA IR ++P AMIDEFQDTD QQY IF +I+ Sbjct: 371 DDLLRLVRNALYQPQGDKLAQLIRHQYPFAMIDEFQDTDQQQYDIFYQIYIKSAVKNTGF 430 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFS-QTDDAF 468 ++IGDPKQ+IY FRGADIFTY+KA + ++L NWRS ++ ++N LF Q + F Sbjct: 431 IMIGDPKQSIYKFRGADIFTYLKATEQAQYRFSLGENWRSTQPLIQTINYLFDFQENSPF 490 Query: 469 MFREIPFIPVKSA------GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC 522 + ++IPF V G RF G +PA++ +L + + +A+ C Sbjct: 491 LHKKIPFQQVAKGLYYDTQGNLLPNRFCLNGRIEPALRGYLTDNND-------TQLAENC 543 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A I WLQ+ + +A+L N +P++A +I+VLV S +A +++ AL I SVYLS Sbjct: 544 ALSIEQWLQSAVQNQAILDN----KPLKAKNIAVLVSSFTQAEKIQKALRDKGIASVYLS 599 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVV 642 +R +VF+++ A+E+L +L+A + P EN + +AL+T++ +I + DE+ W+ V Sbjct: 600 DRSNVFDSITAKELLHILRACLNPLNENNILNALSTALFAKTGAEIFQIKQDENLWENCV 659 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE 702 E F Y+Q W+++G++PML L + I ENL GER++TD+ H+SELLQ+A + Sbjct: 660 ERFIAYQQQWQRQGILPMLHHLFAVEKINENLQMMEQGERKMTDLWHLSELLQQATRLND 719 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN--- 759 +E +LVRW + I + +Q+RLESD+ LV+IVT+HKSKGL Y LVW+PFI Sbjct: 720 TESSLVRWFEKQIQGEERL--EEQIRLESDRELVKIVTLHKSKGLAYDLVWIPFICKPSL 777 Query: 760 FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 FR Y+D + + + D++ D E ER+AED+RLLYVALTR+ + + + Sbjct: 778 FRDNAINTYYDENQEQVLWDMDKQHS--DEIEKERMAEDIRLLYVALTRAKYQIVINLPR 835 Query: 820 LVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD------DIAWQTAQTG 873 + +KK + ++ G++ D + + + ++ +I Sbjct: 836 VF----EKKWNALLYVLTKGQIGVNKRIDDEYDAKKLLSPIIEELGEQCVEIEEDKKLLV 891 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS 933 + + + + A+ NW VTS++ + R H + L R ++ Sbjct: 892 RRNEYITVQQALSPVEAEEFHGKIERNWTVTSFTEMTYR-HQRNRSLNSRQKAQQIEISG 950 Query: 934 VVEEPT----------------------------LTPHQFPRGASPGTFLHSLFEDLDFT 965 V ++ +P FP G G+ H FE + T Sbjct: 951 VFDQARDYDVKENGHDMSASFDMKLSADSDYPVGFSPFDFPHGVHVGSEFHRYFEKYNMT 1010 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEF 1023 Q ++ + + + + +W+ L +WI + PL + G +L + +++ EM+F Sbjct: 1011 QALNDDQLSKLCQTLQLSDEWQNPLKKWINTIFNTPLKQDIAGFTLGNIKSQDCLKEMQF 1070 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 YL +++ + + L+ ++ L + P+ +++GM++GFIDLV R EG+YYLLDYKS Sbjct: 1071 YLKLNQSFNENVFNRLLSKYHHLPS--SPILMDRIKGMVRGFIDLVVRFEGKYYLLDYKS 1128 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 N LG S Y Q + M + YD QY +YT+ALHRYL+ R +YDY+ FGGV+Y FL Sbjct: 1129 NLLGYSSQHYQQDNLIQVMCNNHYDWQYLIYTIALHRYLKERDKNYDYQRDFGGVLYTFL 1188 Query: 1144 RGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 RG++ GI+ +P+ LI+ ++ +F Sbjct: 1189 RGMNG-KDNSGIFFDKPDWRLISELESLF 1216 >UniRef50_A6VNJ9 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pasteurellaceae RepID=A6VNJ9_ACTSZ Length = 1227 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 445/1252 (35%), Positives = 645/1252 (51%), Gaps = 115/1252 (9%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + L+P+ PLQ LIEASAGTGKTFT+A+LYLRLLL G AF PLTVE++LVVTFT Sbjct: 4 QHLNPISTPLQTTTLIEASAGTGKTFTMASLYLRLLLQAG-DNAFSVPLTVEQILVVTFT 62 Query: 66 EAATAELRGRIRSNIHELRIACLR----------ETTDNPLYERLLEEIDDK-------A 108 EA+T EL+ RIR+ IH + TDN + ++ D+ Sbjct: 63 EASTEELKERIRARIHLAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKLDPN 122 Query: 109 QAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFW 168 +A + L AE+ MD AAV+TIHGFC+RML A SG+ F +L+ DE+ L + DFW Sbjct: 123 EAFRRLGFAEQNMDLAAVYTIHGFCRRMLMQYAVNSGIHFNLELVTDETDLLNRLANDFW 182 Query: 169 RRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD----------ETL 218 R Y + + + + PQ +L+ I YL+GE + P + L Sbjct: 183 REQFYGQSFVVTEFIHRKLESPQQVLKKIRAYLKGETLKVSVNRPHLLTMSTAEFLQQEL 242 Query: 219 ASRHAQIVARIDTVKQQWRDAVGELDALIESSG-----IDRRKFNRSNQAKWIDKISAWA 273 A A D +K W D E+ AL E++ + KF R KI AWA Sbjct: 243 AVHLAGSDNIPDELKSAWTDNFAEISALFEANYAGASVFNGNKFKRDYFIARTAKIQAWA 302 Query: 274 EEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD-------L 326 + E +P+ L F+Q +L G HP F+ + + A + + + Sbjct: 303 DSERRD--IPDELWYFTQDYLNGAVLKGKTAFSHPFFDYLAEQKARIEAAQTQLDLDEKI 360 Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEF 386 ++ L + E ++ KR E FDD+L L +AL+SE GE LA IR ++P AM+DEF Sbjct: 361 LLFHYLRTLNERLSAYKRHHPEKSFDDLLRLLKNALQSERGEQLATFIRHQYPFAMVDEF 420 Query: 387 QDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDT 445 QDTD QQY+IF I+ ++P+ ++IGDPKQAIY FRGADIFTY+KA + +TL Sbjct: 421 QDTDEQQYQIFSAIYVNRPDCGFMMIGDPKQAIYQFRGADIFTYLKAAKDAEQERFTLSK 480 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS ++ +VN LF AFM+ +I F PV + FV++G Q M +L Sbjct: 481 NYRSDGSLIRAVNGLFDF-PAAFMYDDIRFEPVAAGK--DQAHFVWRGAQQAPMAFYLGS 537 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEA-----LLMNGDDARPVRASDISVLVRS 560 + A+ CA IR WL + +A + +R +I+VLVR Sbjct: 538 ---------REQAAEYCADNIRQWLTSADENQAGFVMDTAQDNGRNLRLRPENIAVLVRK 588 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 +A +++ AL I SVYLS+R +VF+ EA+E+ ++L A + P E + +ALAT + Sbjct: 589 GSDAEKIKSALQRRGIASVYLSDRTNVFDCAEARELAFILAACLNPFSERHIMNALATGI 648 Query: 621 MGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM-------SARNIAEN 673 + ++ + D + F+ Y++IWR++GV+PML + +I Sbjct: 649 FAFSMAQLQQIKRQAELLDGWMTRFEDYQRIWRRQGVLPMLHRIFLDKGKRGEQADIVGQ 708 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 + A A ERRLTD+LH++ELLQEA ESE AL+ W + I D A QQ+RLES++ Sbjct: 709 IAAQANAERRLTDLLHLAELLQEAAVLHESESALLSWFERQIQGKDRQA-EQQVRLESER 767 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFIT--NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE 791 +LV+IVTIHKSKGLEY LVWLPF+ + + +++ EA+ D+NA + D++ Sbjct: 768 NLVKIVTIHKSKGLEYDLVWLPFLGFDDVKNRDEISIFHDKDAEALWDMNARHQ--DISA 825 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR--------LLQ 843 E+LAE++RLLYVALTR+ + + +A G K+ + AL R + Sbjct: 826 KEKLAEEMRLLYVALTRAKYQ--VAMALPAEFGGKKESYWNPVWYALSRGEIGDGMKITG 883 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 K E Q A L +EA ++ +T W + L+A T NW V Sbjct: 884 KAEKQTAVLLSAHLEA--ENYTLETIPETVSGDKWLPQTNAEVSLSAATFTGKIEQNWGV 941 Query: 904 TSYSGLQQRGHGIAQ--------------DLMPRLDVDAAGVASVVEEPTLTPHQFPR-- 947 TS++ L + + D D + EE P Sbjct: 942 TSFTALSRMHEQNRRFHGEESAVEFTAIFDDALDYDEQQDVFSPTDEEANALWRNLPAEY 1001 Query: 948 -------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 GA G LH FE DF+QP++ + + + W L W+ AVL Sbjct: 1002 SPLALKGGAKFGVILHRFFEKHDFSQPIEDAELLALCQGLQLDETWIQPLKMWLEAVLTT 1061 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 PL+ G L+ + ++ EM+FYL + + L+RQ+ PL P +RG Sbjct: 1062 PLSA-GFKLTDIRPQHCLKEMQFYLNLDRTFDVKAFNLLLRQYHPL--YQQPYLLDDIRG 1118 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 ML+GFIDLV+RH+G+YYLLDYK+N L AY+++ + +Q H YDLQY LY+LALH Sbjct: 1119 MLRGFIDLVYRHDGKYYLLDYKTNLLP----AYSEERIRTDIQQHYYDLQYLLYSLALHC 1174 Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 +L+ R+ YDYE HFGGVIY ++RG+D G++TTRP A LI ++E+ Sbjct: 1175 FLQRRLPAYDYETHFGGVIYAYVRGMDGSGK-TGVFTTRPAARLIRGLEELL 1225 >UniRef50_B5JRL3 Exodeoxyribonuclease V, beta subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL3_9GAMM Length = 1215 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 431/1226 (35%), Positives = 631/1226 (51%), Gaps = 73/1226 (5%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRP----LTVEELLVVTFTE 66 + PL G RLIEASAGTGKTFT+A LYLRL+LG G S L +++LV+TFTE Sbjct: 1 MTFPLHGRRLIEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTE 60 Query: 67 AATAELRGRIRSNIHELRIACLRETTD--NPLYERLLEEIDDKA--QAAQWLLLAERQMD 122 AAT ELR RIR + E A D +PL LL + D+ + A L A + MD Sbjct: 61 AATQELRERIRERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQHSRCAHLLNAAAQDMD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 EAA+ TIHGFCQRML +AF+S LF L EDE L + D+WR PL + + Sbjct: 121 EAAITTIHGFCQRMLREHAFDSRSLFNLSLQEDEKTLTDDSFLDYWRSFALPLEGDAFKE 180 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV-- 240 + P AL L ++ P D+ A R + + + Sbjct: 181 FELNYSTPSALQAAAKNPL-KWVELLPPPIDSDDYTAHLAKSYKKRHQALMKWHQRWHKN 239 Query: 241 GELDALIES-----SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 ++AL E + ++ +K+ +W ++ W + + +L + S L Sbjct: 240 HWMEALREHFPEWKTSLNGQKYQEKTVNQWFAELERWLADPEHPLKLEKGWTNLSPEGLA 299 Query: 296 DRTKAGGETPRHPLFE---AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352 + TK G P H LFE A++ L A D + A + E +A K+RR +GFD Sbjct: 300 ENTKKNGTPPEHELFESIPALEALFATLDENADTIALHAAHWVAERIATHKQRRSLIGFD 359 Query: 353 DMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--QPETA 408 DM+S+L AL + LA IR ++P+A++DEFQDTDP+Q+RIF+R++ + A Sbjct: 360 DMISQLAEALDTPDASDTALAQRIRQQYPIALVDEFQDTDPKQWRIFQRLYPEIETRQNA 419 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLF----S 462 L++IGDPKQAIY FRGADI+TY+ AR + YTL N+RS+ MV +VN +F Sbjct: 420 LVMIGDPKQAIYQFRGADIYTYLDARRSIDDTRRYTLPCNYRSSEPMVAAVNHVFNQGNQ 479 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE-SCGVGDYQSTMAQV 521 AFM +IPF V++ G+ + RFV + A+ +W + + + G Y A Sbjct: 480 HKSGAFMEADIPFEAVQANGRKE--RFVVMEKEHCALTLWYRDSDVAVGKNQYLQQSAAD 537 Query: 522 CAAQIRDWLQAGQRGEA-LLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A++I L + A + + SDI++LVRS EA +RDAL ++ S Y Sbjct: 538 TASEIVRLLNLARDRRAGFINEAGQFTALAPSDIAILVRSGSEAQVMRDALAERQLRSAY 597 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 LSN++SVF++ EA+++L L+A P + +R+AL T + L D++ LN+DE +W+ Sbjct: 598 LSNKESVFDSPEARDVLHWLRACHEPRNDRHMRAALGTITLDLPWADLDALNHDEASWNR 657 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700 E+F Y Q+W++ GV+ ++ L+ ++A ER L++IL ++ELLQ A Q Sbjct: 658 RYEQFAEYHQLWQRSGVLAVIYHLVWDFHLAAR----QNAERSLSNILQLAELLQSASGQ 713 Query: 701 LESEHALVRWLSQHI-LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN 759 ++ E L+RWL +HI E D+++ Q +RLESD L++IVT+HKSKGLEYPLV++PF Sbjct: 714 VDGEAGLLRWLEEHITEERDASSDEQVLRLESDDELIKIVTLHKSKGLEYPLVFMPFCAT 773 Query: 760 FRVQE-QAFYHDRHSFEAVLDLNAAPE--------SVDLAEAERLAEDLRLLYVALTRSV 810 FR + F H+ E L L + E +++ + ERLAEDLRLLYV +TR Sbjct: 774 FRPANAKDFPQAYHNGEGQLQLALSAEEIVSDSTTALEQCDRERLAEDLRLLYVGMTRPR 833 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG--EPQDAAGLRTCIEALCDDDIAWQ 868 LG+AP R K L L + ++ +AL + + Q Sbjct: 834 HALWLGLAPTTLGRAHKSKIGQSVWGHLLNLPADDIDKKTFQEVIKAPFQALAEGAPSVQ 893 Query: 869 -TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL----MPR 923 + +++P+ + +T + QR W + SYS L + IA+ Sbjct: 894 FSTPELNSEPYLGHLDATPLGQPRECQRAQPPRWWMASYSALLRGADPIAETASGFDERL 953 Query: 924 LDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFE 983 D AS H FPRGA PG FLH E + + + Sbjct: 954 ADEGERRKASTELPSPEGLHPFPRGAMPGDFLHRQLELMGEAHFERAEQRLAEFKSELLP 1013 Query: 984 -------SQWEPVLTEWITAVLQAPLNETG---VSLSQLSARNKQVEMEFYLPISEPLIA 1033 W+ L + + ++Q L V+L+ L EMEF+ + + Sbjct: 1014 KLQLRQWEHWQDRLPQALLGIVQQALPLPDNQRVALADLKPAQYHTEMEFHF-AAHGCRS 1072 Query: 1034 SQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 + +D LI L+ + G+LKGFIDLVF HEGRYY+LDYKSN+LG D SAY Sbjct: 1073 TDIDRLIGHDP------SGLKPQSLNGLLKGFIDLVFEHEGRYYVLDYKSNYLGPDDSAY 1126 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ 1153 TQ AMA +++ HRYDLQY LY+LALHR L+ R+ +YDY+ HFGG IY FLRG E + Sbjct: 1127 TQDAMAESVREHRYDLQYALYSLALHRLLKQRLPNYDYDKHFGGAIYYFLRGYQSE--SR 1184 Query: 1154 GIYTTRPNAGLIALMDEMFAGMTLEE 1179 G+++ R + +D +F+ E+ Sbjct: 1185 GVFSVRLELNTLDALDALFSERHDED 1210 >UniRef50_Q2LTC8 Exodeoxyribonuclease V beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTC8_SYNAS Length = 1230 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 403/1245 (32%), Positives = 599/1245 (48%), Gaps = 91/1245 (7%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + D L PLQG LIEA+AGTGKT+ I+ L+LRL++ L V E+LV+T+ Sbjct: 1 MKPFDLLNAPLQGRNLIEANAGTGKTYAISGLFLRLIVEHA--------LQVGEILVMTY 52 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQ---AAQWLLLAERQM 121 T AAT EL+ RIR + A ++ + + + + + A + L A R Sbjct: 53 TVAATEELKDRIRCTLSRALEALGHGRVEDLFLDSFVRRLAEDDRTNSARRRLATALRDF 112 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEAA+FTIHGFCQR L NAFES F +LI + + DFWRRH Y E+ Sbjct: 113 DEAAIFTIHGFCQRTLQENAFESHSTFNAELITESEKITDLILQDFWRRHFYEAQPELVA 172 Query: 182 VVFET---WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 ET G ++ LR I+ + V++ P P+ + + A I ++ W++ Sbjct: 173 YALETKNNLAGYRSFLRQISSH-PDIRIVLEPPAPNHDIVEEEIAAYRREISKLRDSWKE 231 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 + +L+ ++ + + +++D++ + E + LP++ EKF+ L Sbjct: 232 CRETVCSLLRDGSLNGKVYGEYQTDRYVDELDVFLERGGPCFPLPKNFEKFTAGKLSRSC 291 Query: 299 KAGGETPRHPLFEA---IDQLLAEPLSIRDLVIT----RALAEIRETVAREKRRRGELGF 351 + G P+H FE I+ L + D ++ L I + K RR L F Sbjct: 292 RKGCVPPKHHFFEICQVINDLEKRLKVVLDSILLSLKKELLQTIHAELPAFKTRRNILFF 351 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-----HHQPE 406 DD+L RL AL G++LAAAIR ++ A+IDEFQDTDP QY I + + + Sbjct: 352 DDLLLRLRDALGRPEGDLLAAAIRRKYRAALIDEFQDTDPVQYAILQAAFLCNRPEESDK 411 Query: 407 TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 + LIGDPKQAIY+FRGADIF YM A +V A YTL NWRSAP ++N+VN +F + Sbjct: 412 PPIFLIGDPKQAIYSFRGADIFAYMAAAKQVDAAYTLQENWRSAPALLNAVNSVFHSHPN 471 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQ---PAMKMWLMEG-------ESCGVGDYQS 516 F++ I F+ K A Q + + G + +++W++ + G G Sbjct: 472 PFVYEAISFMDSKPAPGGQKEQLILAGPDEWDPAPLQLWVIPDHQKGGKVKPLGKGHATP 531 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 + Q A+I L AG++G AL+ R + A D++VLVRS +EA ++ AL I Sbjct: 532 GILQAVTAEISHLLDAGRKGMALI----GNRRIEAGDVAVLVRSNREARLIQQALLEGSI 587 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 P+V +RD++F++LEA +M LL+A+ P E L +A+ TS++GL+ + L DE Sbjct: 588 PAVM-HSRDNLFDSLEATDMDLLLRAIEVPNDERRLGAAMMTSLLGLSIGALYRLKIDER 646 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 W+ ++ F Y + W++ G M M+R+L+ +I LL+ GERRLT++LH++E+L Sbjct: 647 QWENCLQRFRNYHRQWQEAGFMRMMRSLLRIEDIRSRLLSQPDGERRLTNVLHLAEVLHR 706 Query: 697 AG-TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 755 + L+RWL++ + Q+RLESD V+IVTIHKSKGLEYP+V+ P Sbjct: 707 ESLERNRGMRGLIRWLAEQRDPGKMRSDEHQLRLESDARAVRIVTIHKSKGLEYPVVFCP 766 Query: 756 FIT----NFRVQEQAFYHDRHSFEAVL-DLNAAPESV--DLAEAERLAEDLRLLYVALTR 808 F+ + + H +L DL +++ A E LAE +RLLYVALTR Sbjct: 767 FVWEGAKDVSKNDALTCHGGDENSFLLCDLGLPHQALHELRAYREGLAERVRLLYVALTR 826 Query: 809 SVWHCSLGVAPLVRRRGD----------KKGDTDVHQSALGRLLQ------KGEPQDAAG 852 + C L G K D + + A+ + + Sbjct: 827 AKHRCYLVWGHFNGAGGSAPAYLFHDRTSKWDENNPEEAIAAAASFRNFYNELTGPEILR 886 Query: 853 LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR 912 I I+ N+ L+ + R +WR TS+S L Sbjct: 887 DLDRIADSAHGSISIADLPVPTAVTPLPNEHWKGTLSRRNFTRKLEQSWRFTSFSSLVFG 946 Query: 913 GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD--- 969 +P+ D + P G G LH E LDF + + Sbjct: 947 ------TYVPQEGADRDREEEYRPLKSSDWQVLPPGTQTGNLLHEFLEQLDFKERDEMVL 1000 Query: 970 PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG----VSLSQLSARNKQVEMEFYL 1025 E L GF+S+W+ L I VL L+ G LS + ++ E+ FY Sbjct: 1001 QQRASEALSSHGFDSRWKTALLTLIRNVLALSLSGGGNGQSFRLSDICCGDRISELAFYF 1060 Query: 1026 PISEPLIASQLDTLIRQF---------DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 P+ L L L ++ D L F VRG L+GFIDLVF +GRY Sbjct: 1061 PLKR-LTRDNLRILFQEISREDPGMVPDSWDLEMERLSFSSVRGWLRGFIDLVFVIDGRY 1119 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 YLLD+KSN+LG D S Y+ +A+ + M Y LQY LY LALH YL+ R+ Y E HFG Sbjct: 1120 YLLDWKSNFLGADPSGYSPEALKSVMVRKHYILQYHLYALALHAYLKQRLPGYRVERHFG 1179 Query: 1137 GVIYLFLRGVDKEHPQ-QGIYTTRPNAGLIALM-DEMFAGMTLEE 1179 G+ YLFLRG+D + G+Y RP+ + + D + E Sbjct: 1180 GIYYLFLRGIDPSRGEKTGVYFDRPSEARLTALYDGLIEKNPAER 1224 >UniRef50_A4JS84 DNA helicase/exodeoxyribonuclease V, beta subunit n=9 Tax=Proteobacteria RepID=A4JS84_BURVG Length = 1264 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 454/1257 (36%), Positives = 640/1257 (50%), Gaps = 99/1257 (7%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ + LDPLR PL G LIEASAGTGKTFTIA LY+RL+LG A PLT E+LV Sbjct: 11 TNAPQPLDPLRFPLSGRSLIEASAGTGKTFTIAMLYVRLVLGHEPPGARAEPLTPPEILV 70 Query: 62 VTFTEAATAELRGRIRSNIHELRIACL--------RETTDNPLYERLLEEID--DKAQAA 111 VTFT+AAT ELR RIR+ ++E + + L L + D A Sbjct: 71 VTFTDAATKELRDRIRARLNEAAACFQVEADAVTPQGAGETDLLHALRSDYPPSDWPACA 130 Query: 112 QWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 + L LA MD+AAV TIHG+C RML +AF+S LF Q L D++ L + D+WR Sbjct: 131 RRLQLAAEWMDDAAVSTIHGWCNRMLREHAFDSDSLFSQALETDQTELLAEVVRDYWRTF 190 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR--HAQIVARI 229 PL A V + GP AL + L + + A PD ASR A+ +A++ Sbjct: 191 MTPLGAADAAAVAKWIPGPGALQAQLRNLLALASQLPAAAAPDATLAASRNERARSLAQL 250 Query: 230 DTVKQQWRDAVGE-LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ-LPESLE 287 W D + LDA + R + + +WID + WA + ++ L E Sbjct: 251 KAPWHAWPDQMANVLDAARDDGHFRPRNLRKGDCDRWIDALRRWAGDSSSEEPSLMSGWE 310 Query: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL---AEIRETVAREKR 344 K + L + + G P HP F A++ L E ++ + A E+ Sbjct: 311 KLTPDGLANACEPGAPVPAHPGFLALETLRVELAALPTAHAALLSHAAQWVAARFAAEQA 370 Query: 345 RRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ 404 RR ++GFDD+L+RLD+ALR +GE LA IR +FPVA+IDEFQDTDP QYRIF ++ Sbjct: 371 RRAQMGFDDLLTRLDAALRGPNGERLADVIRKQFPVALIDEFQDTDPVQYRIFDAVYRAD 430 Query: 405 PE---TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-TLDTNWRSAPGMVNSVNKL 460 AL+LIGDPKQAIYAFRGADI TY+ AR TL N+RS+ MV++ N Sbjct: 431 TADAWRALILIGDPKQAIYAFRGADIHTYLAARRSCDGRLHTLAKNFRSSHAMVDATNHC 490 Query: 461 FS-----QTDDAFMFREIPFIPV---KSAGKNQALRFVFKGETQPAMKMWLM----EGES 508 F+ + AF+FR PV + + +A FV G PA+ W + +G+ Sbjct: 491 FAVAEARAGEGAFLFRRSGDNPVPFSTVSAQGRAEVFVVNGAAPPALTAWWLPPADDGKP 550 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 Y ++A CA ++ L GQRG+ D +P+R +DI+VLV +R EA +R Sbjct: 551 TTKTAYLESIAASCATEMVRLLNLGQRGDTGFAGKDGLQPLRPADIAVLVNNRGEADAIR 610 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL + SVYLS+R SVF+ +A E+ L A P+ +R+AL+T+ +GL ++ Sbjct: 611 GALAARNVRSVYLSDRSSVFQCAQAAELQHWLAACADPDDGRLVRTALSTATLGLGWAEL 670 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT--------AGG 680 + E AW+ V +F GY + WR++GV+PMLR ++ + LL T GG Sbjct: 671 DARFGSEIAWEACVLQFRGYHECWRRQGVLPMLRRFLNDFGVPARLLGTHADGRQGVPGG 730 Query: 681 ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA---SSQQMRLESDKHLVQ 737 ER LTD+LH++ELLQ+A ++ H +R+L+ + + + Q RLESD LV+ Sbjct: 731 ERILTDLLHLAELLQQASAMIDGLHGQIRYLADQRAASEDSDAGSDTVQTRLESDGDLVK 790 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQ---EQAFYHDRHSFEAVLDLNAAPESVDLAEAER 794 IVTIHKSKGLEYPLV+LPF R + + E + L+ +++ + ER Sbjct: 791 IVTIHKSKGLEYPLVFLPFACAHRPAKATDLPLKWHDENDELRISLDGGRGALEQVDRER 850 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 L EDLR LYVALTR+ +G+APL + ++A+G L+ +P GL Sbjct: 851 LGEDLRKLYVALTRARHATWIGMAPL----------EALERTAIGYLIGGTQPLAGGGLE 900 Query: 855 TCIEAL--CDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR 912 ++ ++IA A + + A+ R+ + W + SYS L+ Sbjct: 901 DLLQTAFGACENIAVIPAPEPGGERYTPRIDEARRGAARQSARVVREPWWIASYSSLRTA 960 Query: 913 GHGIAQDLMPR--------------------LDVDAAGVASVVEEPTLTPHQFPRGASPG 952 G + P + A + + T H FPRG+ G Sbjct: 961 GKNHREHAAPDTPGEDGFNEASAAERDVDQQPAAETPRHAPMPDANASTLHDFPRGSEQG 1020 Query: 953 TFLHSLFEDLDFTQ----PVDPNWVREKLELGGFESQWE---PVLTEWITAVLQAPLNET 1005 +FLH L E D +RE + W+ LT+ + ++ PL Sbjct: 1021 SFLHDLLEWAAAHGFARIAADREALREVVARRCSVRGWQSWIDPLTDLVMQIVSTPLVLR 1080 Query: 1006 G--------VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 G + L+ L+ EMEF+ A+ LD L+ A PPL+ Sbjct: 1081 GGHGIEPTSIELAALATA--VGEMEFWFAAKHVDTAA-LDRLVCARTLDGAERPPLDPAT 1137 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 + GMLKGF+DLVF HEGRYY+ DYKSNWLG D + YT + + A M RY+LQY LY LA Sbjct: 1138 LNGMLKGFMDLVFEHEGRYYVADYKSNWLGADDTGYTAEKIRAQMLRSRYELQYVLYLLA 1197 Query: 1118 LHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 LHR L+ R+ DYDY+ H GG IYLFLRG++ P QGI+ +P LI +D +FAG Sbjct: 1198 LHRLLKARLPDYDYDKHVGGAIYLFLRGLNA--PTQGIFAEKPPRELIERLDALFAG 1252 >UniRef50_Q8K9A9 Exodeoxyribonuclease V beta chain n=5 Tax=Buchnera aphidicola RepID=EX5B_BUCAP Length = 1179 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 405/1167 (34%), Positives = 680/1167 (58%), Gaps = 17/1167 (1%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 L+ ++PL+G LIEASAGTGKT TIA LYLRLLLGL + R L+V+E+LVVTFT A Sbjct: 24 LNIFQIPLKGIHLIEASAGTGKTSTIAFLYLRLLLGLEKNKENIRKLSVKEILVVTFTNA 83 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A EL RI+ +I EL ++C+++ + +P+++ L +I + +A L A+ ++ AA++ Sbjct: 84 AKEELYIRIKKSIKELHLSCIKKKSKDPIFQSFLTKIKNFDEAIHILEDAKININNAAIY 143 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQ +L N S +++IE+ES L QA DFWR Y LP++I ++++E + Sbjct: 144 TIHGFCQDVLENNTLIS----NREIIENESFLYLQATQDFWRYFFYNLPKKIIKIIYEEY 199 Query: 188 KGPQALLRDINRYLQ-GEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 + P+ LLR+I L+ + K ETL + H +I+ +I+ KQ+W + + + Sbjct: 200 RSPEDLLREIKPILKVNSSINFKKKFDKKETLITFHEKIINKINIFKQKWLNYNLIILKI 259 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I ++++ ++ N KW KI+ WAE ET +Y++P L+ FS+ + ++ + Sbjct: 260 INQLKVNKKIYSNFNILKWKKKITEWAESETKNYKMPICLKYFSETSI-EKNIKNYNFKK 318 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 H FE ID++L + S++++++ A+ I + V REK ++ LGF+D+L L ++ E Sbjct: 319 HIFFEEIDKILKKNFSLKNIILFYAIKNIPKFVKREKEKKLLLGFNDLLKILLKNIKKE- 377 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 E L I ++PVA+IDEFQDT+ QQY+IF ++ ++ TAL L+GDPKQ+IY+FRGAD Sbjct: 378 -ESLREIIIKQYPVALIDEFQDTNIQQYQIFNTLYKNKK-TALFLVGDPKQSIYSFRGAD 435 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 IF+Y+ A+ ++ +Y LDTNWRS+ + ++N LFS+ + F F+ IPF P+ S+ KN Sbjct: 436 IFSYLHAKFKIKNYYYLDTNWRSSKNICKAINYLFSKNKNPFYFKNIPFEPILSSSKNLN 495 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 ++F K + Q A+ + + E + +Y+ +A+ CA +I WL ++GEA++ +G Sbjct: 496 MKFKIKEKNQTAISFFFQKKEEVNIEEYRDWIAKQCANEISYWLTCSKKGEAIISDGSQE 555 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 R + DI +LVR+R EA ++++L + I S Y S +SVF+T +A E+L +L++++ P Sbjct: 556 RILTEKDIVILVRNRTEAQIIKESLKKVNILSKYSSPYESVFKTFDALELLSILKSILDP 615 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS 666 N L+ ++ T ++ A N+ ++++ Y W+ G+ ++ ++ Sbjct: 616 TDINLLKKSILTHILNKIAFQKIKENSKTKISHFLIQKLYEYNDKWKTIGIFYTIKTMIL 675 Query: 667 ARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ 726 N ++R + LHI+ELLQE E++L+RW + ILE ++ + ++ Sbjct: 676 EYQKYANNFEMYKNQQRNINFLHIAELLQEKSQNCYKENSLMRWFEKKILEKNNISENEY 735 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPES 786 ++ ++ +++I+TIHKSKGLEYP+VW+PFI +F V + FYH++ + + D N + E+ Sbjct: 736 IKNFAESKIIRIITIHKSKGLEYPIVWIPFIVDFNVSKSYFYHEKKTLKIFFDNNKSSET 795 Query: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 + ++ ERLAEDLR LYVALTRS++HCS+G++ LV++R K +D+H+S+LG ++Q G+ Sbjct: 796 LKKSDEERLAEDLRFLYVALTRSIYHCSIGISYLVKKRKKNKKSSDIHKSSLGYIIQNGK 855 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ-RLPGDNWRVTS 905 + L ++ L Q + + + L+ + ++TS Sbjct: 856 CMNYKELLYELKILNKKLYIEVKYQAMNCKSLTIKKDDLYILSQPQFLLKEIKLYSQITS 915 Query: 906 YSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT 965 ++ ++Q ++ ++ T H FP G G F+H + + + F Sbjct: 916 FTKIKQENKHFNNIQYNNIE----SYFFKEKDKKKTIHNFPHGNKAGIFIHYILKTIKFN 971 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 + +W L+ F +W L WI +L +N ++LS L E+EF+L Sbjct: 972 NTFNIDWFYTILKKYEFSEKWAKTLMFWINNILNFKINNLNITLSSLKKTQYIKELEFFL 1031 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 PI L L+ +I+ D +S+ + F V G+LKGFIDLVF +YY+LDYK N+ Sbjct: 1032 PIKNTLYCEDLNQIIQSIDLISSISQKIFFNPVIGILKGFIDLVFIFNKKYYILDYKCNY 1091 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG 1145 LG + + Y+ + + + +RYD+QYQLYTLALH+YL+ ++ Y Y+ HFGGV YLFLRG Sbjct: 1092 LGNNDNCYSSKNIKKEIIKNRYDIQYQLYTLALHQYLKKKVKQYHYKTHFGGVFYLFLRG 1151 Query: 1146 VDKEHPQQGIYTTRPNAGLIALMDEMF 1172 ++ + I+ P+ LI + ++ Sbjct: 1152 INVKDS---IFYILPDYLLIKKLTKLI 1175 >UniRef50_A4SEL9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEL9_PROVI Length = 1167 Score = 871 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 413/1197 (34%), Positives = 605/1197 (50%), Gaps = 64/1197 (5%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + L+ + L G L+EASAGTGKT+ + LYLRL++ + L E +LVVT+ Sbjct: 1 MQPLNTSSIALSGINLVEASAGTGKTYALTELYLRLII--------EKELLPESILVVTY 52 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQMD 122 TEAAT ELR +IR I + L L + + L A +D Sbjct: 53 TEAATKELRQKIRERIRDTTAMLASPLECTKRLASLGSLAMEKGAGEVSSLLENALYLLD 112 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 A+VFTIHGFC R L NAFESG L++ ++ DE L DFWR + + Sbjct: 113 TASVFTIHGFCLRALQDNAFESGSLYDTEIAADERELAGSIVDDFWRSRYFSSTAVLPGY 172 Query: 183 VFETWKGPQALLRDIN--RYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + + P++ LR + R GE + + D + + ++I + + + V Sbjct: 173 AMK--ESPESFLRFLGEVRASSGERIIPQFSSSDIVAIEDECQSLYSQIAEMWRDEGEKV 230 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 ++ + K+ + + + A+ EE + L E + KFS + + TK Sbjct: 231 KKMISEDRGLSRAAGKYREDDLVELFRGMDAFVEEALP-FSLFEGIVKFSASRMAEWTKK 289 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 PRH LFE D + + R+ + + K+ FDD+L + + Sbjct: 290 KFTPPRHKLFELCDCYHRAIRQRFLALKAELILYCRDRLPKRKKEANIRFFDDLLHDMHT 349 Query: 361 ALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 AL + E GE +R R+P A+IDEFQDTD +QY IFR I+ L LIGDPKQAI Sbjct: 350 ALFNHEEGEAFRLLLRRRWPTALIDEFQDTDARQYDIFRSIYEKADGP-LFLIGDPKQAI 408 Query: 420 YAFRGADIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477 Y+FRGAD+F Y+KA V +TL NWRS P ++++ N LFS D F+F EI + Sbjct: 409 YSFRGADVFAYLKASRNVEEGRRFTLTHNWRSVPQLLDAFNVLFSNVPDPFLFGEISYRS 468 Query: 478 VKSAGKNQALRFVF-KGETQPAMKMWLMEGESCGVGDYQSTMA-----QVCAAQIRDWLQ 531 + S + RFV K + + ++ +++ + A + A +I L+ Sbjct: 469 LVSGTPEREDRFVVQKDDGRVPLEFLVLDASMKENALFSVDEATGFASEAVAGEIFKLLR 528 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 + + GE L+ RP+RA DI+V+VRS ++AA+VRDALTL IPSV S+R SVF + Sbjct: 529 SARNGETLI----GGRPLRADDIAVIVRSHRQAARVRDALTLFAIPSVVRSDR-SVFASN 583 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI 651 EA+E+ LL A++ P E +R+AL T ++G + DI + +DE W + F + Sbjct: 584 EAREIAILLAALVDPSDEGKIRAALITDILGRSGNDIGAMMDDESLWVPQLHFFARLHSL 643 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRW 710 W +RG M M L+ ++ LL+ A GERRLT++LH ELL + + AL W Sbjct: 644 WIERGFMTMATVLLREEDVRRRLLSLAEGERRLTNLLHCIELLHQKEHEEGVGPEALASW 703 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF-RVQEQAFYH 769 +Q+++E Q+RLE+D+ V+I+TIH SKGL++P+V+ PF+ N Sbjct: 704 FTQNMVEGGQRDEEYQLRLETDEPAVKIMTIHVSKGLQFPVVYCPFLWNGSPAARDVAAF 763 Query: 770 DRHSFEAVLDLNAAP--ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 +AVLD + + L+ E+LAED+RLLYVALTR+V+ CS+ VAP+ + Sbjct: 764 HDEGDKAVLDFGSEDFEHHLVLSHEEQLAEDIRLLYVALTRAVYSCSVVVAPIRKT---- 819 Query: 828 KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT-----AQTGDNQPWQVND 882 Q+AL LLQ G + + A D + +T A + Sbjct: 820 -------QTALNHLLQSGTRETLHEQLNHLIARGDGAVGMRTIDQPGASVQPAALHEAFR 872 Query: 883 VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTP 942 E K +WR+ S+S + A +P D V + P + Sbjct: 873 RENGEAVRKVFTGRIDRSWRIASFSFFTRGS--YAHPELPDRDEMQRNVPDGAKHPGPSI 930 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVD---PNWVREKLELGGFESQWEPVLTEWITAVLQ 999 FP GA G F+HS+FE LDF++P D ++ LE G+ QW PV++ + VL Sbjct: 931 VTFPGGAQAGIFMHSIFETLDFSRPFDDSTEEGIKNALERSGYHQQWLPVISSMVRTVLS 990 Query: 1000 APLN---ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 L + +LS L EMEF+ P+ L L +L R + L+F Sbjct: 991 VSLGMEDGSSFTLSDLKPGEWVTEMEFFFPL-RFLTPDHLSSLARTALHPAQ----LDFA 1045 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 VRGML G+ID+VF+ GRY+LLD+KSN LGE +YT++ M A M H YDLQY LYT+ Sbjct: 1046 PVRGMLIGYIDMVFQAGGRYWLLDWKSNHLGESLDSYTKERMEAVMGFHHYDLQYLLYTV 1105 Query: 1117 ALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ-GIYTTRPNAGLIALMDEMF 1172 ALHRYL RI DY Y+ HFGGVIY+FLRGVD+ + G Y RP+ L+ + E+ Sbjct: 1106 ALHRYLSVRIPDYRYQTHFGGVIYVFLRGVDESSGESRGFYRARPSEELVNSLTEIL 1162 >UniRef50_B8FB94 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB94_DESAA Length = 1167 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 377/1198 (31%), Positives = 574/1198 (47%), Gaps = 61/1198 (5%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + ++ + PL+G LIEASAGTGKT+T+ +LY+RLL+ + L V+++LVVT Sbjct: 1 MTKSNEAQFAPLEGVNLIEASAGTGKTYTLTSLYIRLLI--------EKGLLVDQILVVT 52 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FT AAT EL+ RIR+ + R A + D+ L + +++E + Q+ + A R+ DE Sbjct: 53 FTVAATQELKDRIRNRLKIARDAFDGKEVDDDLVQAVVKE-HNNPQSRLRVEDAIRRFDE 111 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183 AAVFTIHGFCQR+L NAFESG F+ +L D + DFWRR Y P I Sbjct: 112 AAVFTIHGFCQRVLGENAFESGASFDAELATDNQDFLMEIARDFWRREFYEAPELIIAYA 171 Query: 184 FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 + P+ R + + P I+ P ++ S A V W + ++ Sbjct: 172 MHRTRTPEYYARLLE--YAAKYPGIRIIPQAEKPEFSALDGFKAARKKVADAWPANLDQV 229 Query: 244 DALIESSGIDRRKFNRSNQAK---WIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 A+ ES + ++ + + K + + + + + L + F ++ K Sbjct: 230 LAVFESGDLKANQYGKPDSGKAQVFAQAMDDYLQAGEPGFPLFPQFKYFCADTVQKAGKK 289 Query: 301 GGETPRHPLFEAIDQLLAE------PLSIRDLVITRALAEIRETVA-REKRRRGELGFDD 353 G E P+ F +L L L + + + E K + F+D Sbjct: 290 GCEIPKLDFFNDCQELQEAGEEMERELEQYLLYLDQEVFRFAEKAEPERKTAKNIRFFND 349 Query: 354 MLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIG 413 ++ AL G LA A+R ++ A+IDEFQDTD QY IF ++ AL LIG Sbjct: 350 LVLGFQKALSGPMGPALADAVRKKYQAALIDEFQDTDAAQYDIFYNLFAG-RRQALFLIG 408 Query: 414 DPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI 473 DPKQAIY FRGAD+F+Y++A V Y+L+ NWRS+P ++ VN +FS+ AF+ I Sbjct: 409 DPKQAIYGFRGADLFSYLQASRNVEESYSLENNWRSSPQLIRGVNAVFSRNPQAFVLDGI 468 Query: 474 PFIPVKSAGKNQALRFVFKGETQPAMKMWLM---EGESCGVGDYQSTMAQVCAAQIRDWL 530 F V+ + KG+T P +++W + E ++ +G+ Q+ + A+++ L Sbjct: 469 EFKSVRPKPGVNPALPLEKGQT-PPLEIWAVAPKEDKAVTIGEVQNIAVRAVASEVSRLL 527 Query: 531 QAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFET 590 G+ SDI+VLVRS +A VRD L + SV D +FET Sbjct: 528 GLGE--------------YSPSDIAVLVRSNMQAQAVRDGLRQAGVHSVLNRTGD-LFET 572 Query: 591 LEAQEMLWLL-QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR 649 EA E+ ++ A + ++AL+ S +G A +++ L E + V+ F Sbjct: 573 PEAVEIRRVMTAAAANRLQNV--KAALSVSFLGWTAEELDRLAPGEEVVEKVLTLFSDLH 630 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALV 708 +IW+K G M M M + + +L GERRLT+I+H++E+L +A + + L+ Sbjct: 631 EIWQKSGFMRMFTYFMHNKELPSAVLTLPEGERRLTNIMHLAEVLHQAEKERKLGVSGLI 690 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--- 765 +WL + + Q+RLESD VQ+VT+H SKGLE+P+V+ PF+ + Sbjct: 691 KWLDRQMDLSSPRKDEHQLRLESDAQAVQVVTMHGSKGLEFPVVFCPFMWQESEPRKGTP 750 Query: 766 -AFYHDRHSFEAVLDLNAAP-ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRR 823 F+ LDL A + A+ E +AE++RL YVALTR+ C + + + Sbjct: 751 LTFHDPDQDERLTLDLRAEDSPHREQAKLENVAENVRLAYVALTRAKDRCYMLWGAINKA 810 Query: 824 RGDKKGDTDVHQSA-LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVND 882 + + GR+ + + + ++ IA Sbjct: 811 QTSAPAYLLHGGAVNDGRVEIRLNYKTLFEDLEELAKGAENAIALTLPPEEIYPAAFAAG 870 Query: 883 VSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT- 941 + L A + P W VTS+S L G + V E Sbjct: 871 GANPALEALEFKARPDLTWSVTSFSALSMDQPGRNEPGADEAAAPGPQVEIEDEPEEEAA 930 Query: 942 -PHQFPRGASPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQWEPVLTEWITAV 997 FPRG PG LH +FE+LDF + V++KLE+ GFE QW + + V Sbjct: 931 DIFAFPRGIGPGIMLHDIFENLDFLDHAPKKVLDLVQDKLEVYGFEDQWAQPVAGMVQNV 990 Query: 998 LQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF 1055 L PL + +LS++ + EMEFY PI + I + I L F Sbjct: 991 LFCPLEKERPDFTLSRIPMTARSNEMEFYFPIKK--ITPKAFEGIFGNGLPKDRPDRLHF 1048 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 V+G + GF+D+VF +GRYY++D+KSN LG Y +++A AM H+YDLQY LYT Sbjct: 1049 SPVKGFVHGFMDMVFCFDGRYYIVDWKSNHLGNAPEDYGPESLAHAMVHHKYDLQYLLYT 1108 Query: 1116 LALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPNAGLIALMDEMF 1172 LAL +L RI DYDYE HFGG+ Y+FLRGVDK P+ GI+ RP +I + Sbjct: 1109 LALDLHLAQRIKDYDYEKHFGGIFYIFLRGVDKSLGPEYGIFQDRPGLDMIQRLKGAL 1166 >UniRef50_A1TWK0 DNA helicase/exodeoxyribonuclease V, beta subunit n=3 Tax=Marinobacter RepID=A1TWK0_MARAV Length = 1241 Score = 868 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 476/1249 (38%), Positives = 653/1249 (52%), Gaps = 88/1249 (7%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELL 60 ++ LDPL LPL G LIEASAGTGKTFTIA LY+RL+LG G + + L LL Sbjct: 6 TNRNPNLDPLTLPLNGSALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLL 65 Query: 61 VVTFTEAATAELRGRIRSNIHELR------IACLRETTDNPLYERLLEE----IDDKAQA 110 VVTFTEAAT ELR RIR+ + + L T + L +L ++ + Sbjct: 66 VVTFTEAATKELRDRIRTRLTQAAEVFSEAADSLEPTPETALIHKLRDDSYPDPASWPEC 125 Query: 111 AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 + LLLA MDEAAV TIHGFC RML+ +AF+SG LF+ L D+S L D+WR Sbjct: 126 RKKLLLAAEWMDEAAVSTIHGFCNRMLSEHAFDSGSLFKLTLETDQSELLEDVARDYWRT 185 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 YPLP + WK P L + + + A + P + + ++ AR + Sbjct: 186 FVYPLPPALMDEALSHWKTPTDLRKAVRNLIDDPAALGTPPENVHQAINQVVSERQARAN 245 Query: 231 TVK-QQWRDAVGELDALIESSGIDRRKFN--RSNQAKWIDKISAWAEEET---NSYQLPE 284 +K W E+ L+ +R ++ K D + AWAE + Sbjct: 246 ELKAHPWAQWQQEVTDLLNGLNKAKRLHGGSKNAMLKVWDSLLAWAESDELLPEKLDSAA 305 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEIRETVAR 341 + + L++ K PRHP F+AID LLA S + ++ A + + Sbjct: 306 GYKNQTPEGLDNILKGDEPAPRHPAFDAIDALLAFGQNLPSAKSDILRHASHWVAARLEA 365 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 EK++R E+GFDD+L+RLD AL G+ LAA IR +FPVA+IDEFQDTDP QYRIF RI+ Sbjct: 366 EKQQRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVALIDEFQDTDPVQYRIFNRIY 425 Query: 402 H---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSV 457 + +QP+T LL+IGDPKQAIY FRGADI TY++AR V A YTL TN+RSA MV+ V Sbjct: 426 NVEANQPDTCLLMIGDPKQAIYGFRGADIHTYLQARLGVQARTYTLGTNYRSADTMVSGV 485 Query: 458 NKLFSQTDDA-------FMFREIPFIPVKSAGKNQALR-FVFKGETQPAMKMWLME---- 505 N++F +D F + +P +S N R + GE QP++ W E Sbjct: 486 NRVFEYSDQQSPKGAFLFGNGDSTPLPFQSVAANGTKRLWAVNGEIQPSLVFWTHESGEE 545 Query: 506 -----GESCGVGDYQSTMAQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDISVL 557 + G + +A+ CA++I L QAGQ G L N D PV SDI+VL Sbjct: 546 DKEGNPKGLAKGTATADVAETCASEIARLLTLGQAGQAGFVLPDNPADLEPVEPSDIAVL 605 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 V +R EAA VRDAL I SVYLS+RDSV + EA E+L L+A P + +R+ALA Sbjct: 606 VNNRNEAAAVRDALGRRRIKSVYLSDRDSVLTSREANEVLCWLRAFAEPRQLAFIRAALA 665 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 T +G + ++ L DE + +E F Y+Q W+ +GV+PMLR+ + + LL Sbjct: 666 TPTLGQSWQALDRLLTDELILEREIERFQRYQQQWQSQGVLPMLRSFLMDFEVPGRLLQR 725 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 GERRLTDILHI+ELLQ+ QL+ EHALV +Q + D + +RLESD LV+ Sbjct: 726 PDGERRLTDILHIAELLQQDSLQLDGEHALVHHFTQILRAADEEDEHRTLRLESDAGLVK 785 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQEQ---AFYHDRHSFEAVLDLNAAPESVDLAEAER 794 ++T+HKSKGLEYPLV+LPF T FR + + + + V + PE ++ A+ ER Sbjct: 786 VITVHKSKGLEYPLVFLPFGTAFRAENPKQAYVRYHDDTGKLVTVFDPTPEDIERADQER 845 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854 L ED+R LYVALTR+ + +G A + + +QS LG + G P+ Sbjct: 846 LGEDIRKLYVALTRARFATWVGAAAV----------DNWYQSGLGYAI-AGTPEQPISQA 894 Query: 855 TCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG- 913 A +I N + A A R ++W + SYS ++ G Sbjct: 895 LASLAQGRPEIRITPLPEAGNTIF-TETAPEALGPALISNREAKEDWWIASYSTIEYTGM 953 Query: 914 -------HGIAQDLMPRLDVDAAGVASVVEEPTL----TPHQFPRGASPGTFLHSLFEDL 962 G +D + ++ + E P + H FP+GA PGTFLH L E Sbjct: 954 AGTGITFTGEVEDAQTQNLLEESAQDDTDEAPPVPAVRNHHHFPKGAGPGTFLHELLEWC 1013 Query: 963 DFTQ----PVDPNWVREKLELGGFES---QWEPVLTEWITAVLQAPL-----NETGVSLS 1010 +P + E+L W L W+ +++ PL E SL+ Sbjct: 1014 TAQGFQRVVDNPELLHEQLSRRCGTRGWGDWIEPLQHWLLELIRKPLRLDRNGEDTASLA 1073 Query: 1011 QLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVF 1070 QL + E+EF+ S + LD L+ ++ A P E + GMLKGFIDLVF Sbjct: 1074 QLESLR--PELEFWFE-SRNVSIHTLDKLVTRYTLNGADRPRAEANRFNGMLKGFIDLVF 1130 Query: 1071 RHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYD 1130 H+G+YY+LDYKSN LGED +AYT QAM A+ RYDLQY LY LALHR L+ R+ YD Sbjct: 1131 EHKGQYYVLDYKSNALGEDDAAYTDQAMGQAILDKRYDLQYILYLLALHRLLKARLPGYD 1190 Query: 1131 YEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 Y+ H GG +YLFLRGV+ G +T +P LI +D +F G + Sbjct: 1191 YDQHIGGAVYLFLRGVNSASG--GAFTDKPPRMLIEQLDALFDGEPVSG 1237 >UniRef50_C7LVF7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF7_DESBD Length = 1168 Score = 868 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 390/1190 (32%), Positives = 573/1190 (48%), Gaps = 50/1190 (4%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 E +D PL G LIEASAGTGKT+T+ L++RLLL + LTV+++LVVTF Sbjct: 1 MEPMDLCTAPLDGTTLIEASAGTGKTYTLTGLFVRLLL--------EKNLTVDQILVVTF 52 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 T+AAT ELRGRIR + ++ E + E L AA+ L LA R D A Sbjct: 53 TDAATEELRGRIRKRLSDVAGVLAGELEADEELEWDLLARFGGTDAARRLELALRNFDLA 112 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 +FTIHGFCQRML N FE LF+ QL D S LR Q C DFWR H PL V Sbjct: 113 QIFTIHGFCQRMLGRNGFECSALFDTQLEPDLSDLRRQVCVDFWRSHILPLGGLTGTEVR 172 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 + P L G+ I + A + + +K W E+ Sbjct: 173 KQL-TPDHLTEMSGLPFLGQRIRIVPGTLAPDPAPLDRA-VREACERLKASWSVMEPEVR 230 Query: 245 ALI--ESSGIDRRKFNRSNQAKWIDKISAWAEEET-NSYQLPESLEKFSQRFLEDRTKAG 301 L+ + + R+F+ + + + + ++ + ++L + + +++ TK Sbjct: 231 TLLLARADNFNARQFSPQKLDQRLKATRDFLNDPRLDAKEQLKALGELTSTYVQGMTKKA 290 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDLV-------ITRALAEIRETVAREKRRRGELGFDDM 354 P H LF+ I +L + ++R L+ L+ + + KRRR LGFDD+ Sbjct: 291 FTAPEHRLFDEIQNILDQVEALRHLLGPFVVHLRHAFLSGVTARLDELKRRRNVLGFDDL 350 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-HQPETALLLIG 413 L + +AL S L AA RT++ A+IDEFQDTD QY IFR ++ E +L LIG Sbjct: 351 LRNMHAALAS---PELVAAARTQYRAALIDEFQDTDGLQYDIFRTLFATGDGENSLFLIG 407 Query: 414 DPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ--TDDAFMFR 471 DPKQAIY+FRGAD+ TY+ A TL N+RS P ++ +VN+LF + F+ Sbjct: 408 DPKQAIYSFRGADLHTYLTAADSCERGMTLGVNYRSTPELIAAVNRLFFRPDNPRPFLDP 467 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME--GESCGVGDYQSTMAQVCAAQIRDW 529 +I + PV + K + RF G+T M +W ++ + G + + AA+I Sbjct: 468 KIAYQPVSAPDK-ERDRFREDGQTPAPMVLWQVKSADKPLAKGALAPRICRAVAAEISRL 526 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 L+ G + + P+ DI+VLV + + + AL L IPSV SVF Sbjct: 527 LRGAAEGRIRIGDA----PLLPGDIAVLVETHAQGEAIHQALGALRIPSVVTH-TSSVFA 581 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR 649 + EA E+L +L+ + +R LR+ALA M+GL A D+ ++ D + E F R Sbjct: 582 SPEASELLSVLRGMAECQRPAALRTALAAPMIGLTAPDLALIDEDGEKLEEWFERFLACR 641 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALV 708 ++W +RGVM +R L + +++ + L++ GERR+T++LH ELL + HAL+ Sbjct: 642 ELWDRRGVMAAVRRLFAGQDVRKRLVSLPDGERRMTNVLHCLELLHSRERESGAAMHALL 701 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-TNFRVQEQAF 767 W ++ + Q+RL++D+ VQIVTIHKSKGL+YP+V+ PFI R E Sbjct: 702 TWFARRL--GTEGTEESQLRLDTDRDAVQIVTIHKSKGLQYPVVFCPFIFGRARCPEDRA 759 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 L P + A +E AE +RLLYVALTR+ C + Sbjct: 760 LVHEDGLLLDLGTEELPRRIGQALSEAQAERVRLLYVALTRAKCRCYAIWGRINEAETSG 819 Query: 828 KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 A E D + + L +DDI + + + Sbjct: 820 AAWLFHGHRADENSTLSWETVDEDMVCADLRVLANDDIEVAELPDAEPKQGPPQFTHAPD 879 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR 947 L + R+ G + + S++GL + A+ + +D + FP Sbjct: 880 LRCRNWDRVLGSGFGLASFTGLTRGMEHGARPGLDEVDASGQAAD------EWSMANFPC 933 Query: 948 GASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG 1006 GA+ G+ LH +FE +DF + P V E L GF+ W + + + VL A L E G Sbjct: 934 GAAAGSCLHRIFERIDFADEITIPAAVTEALAAYGFDPAWHQTVHDMVKRVLHADLGE-G 992 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP----LEFMQVRGML 1062 + L + ++K VEMEF P+ + L P L F RG + Sbjct: 993 LQLGGIEQKDKLVEMEFLFPLRPVTRETLAAVYRDSAGLLPPDLPERMGNLRFEPRRGFM 1052 Query: 1063 KGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 GF+DLV R ++YLLD+KSNWLG YT A+ AAM Y LQY LY LAL R+L Sbjct: 1053 TGFMDLVVRSGRKFYLLDWKSNWLGPTPGHYTPDALHAAMAGSHYFLQYHLYCLALKRHL 1112 Query: 1123 RHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 R +DYE FGGV Y+FLRG+D + P QG++ RP+ + +D+ Sbjct: 1113 ALRKPGFDYEKEFGGVRYVFLRGIDPQTPGQGVHANRPDPRFLDALDKAL 1162 >UniRef50_A8ZX09 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX09_DESOH Length = 1203 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 390/1217 (32%), Positives = 565/1217 (46%), Gaps = 72/1217 (5%) Query: 2 SDVAETLDPLRLPLQG--ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 E D L L G L+EASAGTGKT+ I L+LRL+ V+ + Sbjct: 1 MARREPFDILCADLSGGITTLVEASAGTGKTYAIVGLFLRLIAETDAG--------VDNI 52 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTD-NPLYERLLEEIDD-KAQAAQWLLLA 117 L VT+TEAAT EL+G+IR+ + + A T +PL + LL++ + +A AA+ L A Sbjct: 53 LAVTYTEAATQELKGKIRTALRKAATAFKTGTMSGDPLIDGLLKKRETTRAVAARRLKRA 112 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 D+AA+FTIHGFC RML AFESG+LF +++ ++ L Q DFWR+ Y Sbjct: 113 LEAFDQAAIFTIHGFCSRMLGEFAFESGVLFGAEMVTNQDELVQQVARDFWRQRFYGASP 172 Query: 178 EIAQV-VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 V E R +N ++ + + A+ A A ++ V QW Sbjct: 173 LFLDYAVGEKGLCVDTFTRLLNNWMVFPDLRVVPGADETVDTAALEAAFAASLEQVAAQW 232 Query: 237 RDAVGELDA-LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 + L+ S G+ R + + W ++ A+A E +KF+ + Sbjct: 233 TADKAAVQEILLNSGGLRRNLYRADWLSGWFLRMDAYAGPREGLPSEFEQFKKFTTTGIA 292 Query: 296 DRTKAGGETPRHPLFEAIDQ-------LLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 + TK+GG HP F+ Q L + +R L E R+ + +K+R Sbjct: 293 EGTKSGGTVAHHPFFDTCQQHMEIRQALTGAFDRRIAVEKSRFLGEARKALDAQKQRLNI 352 Query: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 FDD+L LD L S++ L R R+ +IDEFQDTDP QYRIF ++ +A Sbjct: 353 RYFDDLLLNLDRVLVSDARTGLIEKARHRYRAVLIDEFQDTDPLQYRIFSSLFQGA--SA 410 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L IGDPKQAIY FRGAD+F Y++A V TL NWRS G+V VN LF F Sbjct: 411 LFFIGDPKQAIYGFRGADVFAYLEAVPGVDVACTLAENWRSRAGLVTGVNTLFQAVAAPF 470 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG----VGDYQSTMAQVCAA 524 +F EI F P A Q R G A+++ LME + + +A+ AA Sbjct: 471 VFDEINFAPAAPASGAQIPRLTIDGNEPAALELRLMESDDFSTKTQKAAWIQLVARDTAA 530 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNR 584 Q + G+ +A L + RP+ A D+++LVR EA V++AL+ L + S L Sbjct: 531 QAARLVALGREQKAWLGD----RPLAAEDMAILVRRNTEAILVQEALSRLNVHSTILKAG 586 Query: 585 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE 644 D +F + EA EM LL AV + ++ A AT MMG +A I L+ + D VVE Sbjct: 587 D-LFGSHEAFEMQVLLSAVAFAHDLSLVKGACATQMMGHDARRIAGLSLEADTTDPVVER 645 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-S 703 F YR +WR+ G M M L+ + L+A GERR T++ H++ELL + Sbjct: 646 FLSYRDLWRRHGFMKMFSRLLRREEVLPRLMAFPDGERRCTNLFHLAELLHRTALEAHYG 705 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT----N 759 LVRWL + Q+RLESD V+I+TIHKSKGLEYP+ + P++ Sbjct: 706 PERLVRWLMRQRTGLQGRNEEHQLRLESDDSAVKIITIHKSKGLEYPVTFCPYLWTGTPR 765 Query: 760 FRVQEQAFYHDRHSFEAVL--------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 + H+ ++ D + + E L+E++RLLYVALTR+ Sbjct: 766 TAGGDGVACHEPREDGSLSMVLDLRSGDAEGVADRRERWYRETLSENMRLLYVALTRAKN 825 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 C + V P S L LL GE +A + I Sbjct: 826 QCYVSVVPEKAD-----------GSPLAALLGTGEAGISADALERVAGQSGGSIHVTRVG 874 Query: 872 TGDNQPWQVNDV---STAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA 928 D ++ + A+L+ + +WRV S+S +++ G D + D Sbjct: 875 PADLHAAPLSAEDGGAEAKLSCRRFPGTIAADWRVASFSAMRRSFSGTEADHVAADDGGV 934 Query: 929 AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV---DPNWVREKLELGGFESQ 985 ++ P QFP GA G F+H +FE LDFT V +L F+ Q Sbjct: 935 TPDPELLSAPYTGIAQFPAGARAGLFMHEVFEYLDFTNADPVYREELVSRELSRYNFDRQ 994 Query: 986 WEPVLTEWITAVLQAPL----NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 W + + + VL PL GV L + + E+EF+ P+ S + Sbjct: 995 WRGPVCDMVDRVLSTPLPPVSGGEGVRLDSVPMDCRINELEFFFPLRSVSPESLAAAYRQ 1054 Query: 1042 QF-----DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 D S L F RG+++GF+DLVF GRY+++D+KSN LG + +Y+Q Sbjct: 1055 AGAGPGNDRFSHALKALAFSPARGVMRGFVDLVFFSAGRYFIVDWKSNLLGPNPESYSQT 1114 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK-EHPQQGI 1155 + M+ Y LQ LY +AL++YL R+ YDY FGGV Y+FLRGVD P GI Sbjct: 1115 RLREVMEKEFYLLQAHLYAVALNQYLSARLPAYDYASDFGGVYYVFLRGVDPAAGPDYGI 1174 Query: 1156 YTTRPNAGLIALMDEMF 1172 Y P+ L+ + Sbjct: 1175 YRETPSVELMRALTRCL 1191 >UniRef50_C5SAK7 Exodeoxyribonuclease V, beta subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAK7_CHRVI Length = 1284 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 455/1289 (35%), Positives = 634/1289 (49%), Gaps = 119/1289 (9%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L+PL +PL G RLIEASAGTGKTFT+A LYLRL+LG GG AF R L E+L Sbjct: 1 MNTTIQRLNPLEVPLHGSRLIEASAGTGKTFTLAMLYLRLVLGHGGETAFARQLMPPEIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRE---TTDNPLYERLLEEID--DKAQAAQWLL 115 VVTFT AAT ELR RIR + E + + + +PL L +++ D A +A+ L Sbjct: 61 VVTFTNAATEELRDRIRRRLVEASLVFRNQSSPGSSDPLLLDLRDQMAGGDLAHSARRLE 120 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL 175 LA MDEAA+ TIH +C RML +AF+S FEQ L D++ A D+WR L Sbjct: 121 LAAEWMDEAAISTIHAWCYRMLREHAFDSANAFEQTLENDDAERLQHAAEDYWRTFLLGL 180 Query: 176 PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 P E + + E W P L + + L + P DE + I T+K Sbjct: 181 PAERLEPILEQWSQPSDLAKAVRGLLSLAEYLPPIADPPDEIVGRCLETRRHTIATLKTD 240 Query: 236 WR--DAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF 289 WR D + L+ L E + + N++++AK +D + W E + + + Sbjct: 241 WRTQDHIAALERLFEQAVKNKAFKQPSLNKTHRAKVLDGLRVWLETPDQTEPDIFGGQSW 300 Query: 290 -------SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVARE 342 D KA + P + + L + ++T A+ ++ V RE Sbjct: 301 QRMSSLAIAEIWNDPAKAPVDDPACRALADLHETLTTLPDPTEDLLTHAVHWLKSHVERE 360 Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 KR+ L +D+L RLD AL+ E E LAAAIR +FPVA++DEFQDTDP QYRIF I+ Sbjct: 361 KRQSAILTQNDLLIRLDQALQGEVRERLAAAIRRQFPVALVDEFQDTDPLQYRIFSSIYE 420 Query: 403 ---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVN 458 + T +IGDPKQAIYAFRGADI TY+ AR+ HYTLD N+RS+ G++ +VN Sbjct: 421 IQANHAATGFFMIGDPKQAIYAFRGADIHTYLIARAATQGRHYTLDVNYRSSTGLITAVN 480 Query: 459 KLFSQTD-----DAFMFRE-------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 LF + AF+FRE +PF P + + + G P ++ W++ Sbjct: 481 ALFEHGERTATHGAFLFREPDGQGNPVPFHPARPRDQAERT-LTIDGRPCPPLQGWVIPP 539 Query: 507 ES---CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG-DDARPVRASDISVLVRSRQ 562 Y++ A+ A I + L+ GQ G ALL G D RP+ SD++VLV +R Sbjct: 540 GPSGKLNKDAYRARTAEAAARAIAELLRLGQAGRALLPVGQDGERPLEPSDLAVLVNNRN 599 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 EA +R L L++ SVYLS R +VF+T A+++ LL+A+ P + +R ALAT ++G Sbjct: 600 EADAIRTELRRLDVASVYLSERGNVFDTQIARDLAVLLRAIADPFDDRLMRQALATRLLG 659 Query: 623 LNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 D++ LN DE W+ E WR++G +PML L+ IA LL T GER Sbjct: 660 QGLTDLDRLNRDELHWETQGERLRDLNGRWRRQGFLPMLYRLIGEFRIAARLLGTTDGER 719 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN----ASSQQMRLESDKHLVQI 738 +TD+LH+ ELLQ A +L+ E ALVR+L + I + D+ A ++Q+RLESD LV++ Sbjct: 720 AMTDLLHLGELLQRASEELDGEQALVRFLEEAIADSDAATGETAEARQLRLESDARLVRV 779 Query: 739 VTIHKSKGLEYPLVWLPFITNFRV---QEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL 795 VTIHKSKGLEYPLV+LPFI + R +++ + + L V A+ ERL Sbjct: 780 VTIHKSKGLEYPLVFLPFIADCRRTQSKDRPLKTHDAAHRLQVHLGGDDALVAQADRERL 839 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 EDLR LYV LTR+ LG+ + G +P+ Sbjct: 840 GEDLRKLYVGLTRARHANWLGLGAISDLEHSALGYLLGLDGQTVEWSGDDQPETEGSGSE 899 Query: 856 C-------IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRLPGDNWRVTSYS 907 + A P + EL A+ W ++SYS Sbjct: 900 AQGTSNGDLSARLRRLSCVTLIDPPAADPAPYQAEAEVELEGARPAPDWRPRAWWISSYS 959 Query: 908 GLQQRGH---------------GIAQDLMPRLDVDAAGVASVVEEPTLTP---------- 942 L + H ++ + P V+ A +V EE T Sbjct: 960 ALSRGAHLADSEDLAAGVWAASETSRPVSPADAVETADDETVREELAETRTPETEMQTRS 1019 Query: 943 ------HQFPRGASPGTFLHSLFEDLDFTQPVDPN--------------------WVREK 976 H FPRG GTFLH L E + + ++ Sbjct: 1020 LGTGRLHDFPRGGRYGTFLHGLLEWAANLRAPTRPTGPARPGFAAALEAAQARRRMLTQR 1079 Query: 977 LELGGFESQWEPVLTEWITAVLQAPL----------NETGVSLSQLSARNKQVEMEFYLP 1026 W L W+ +L + L+ L R QVE+EF++ Sbjct: 1080 CASRRLS-DWVEPLDAWLIELLDRTWHLDALAPPDGAVPQLRLADLDPRRYQVELEFWIE 1138 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 S + + LD +I + P L + GMLKGFIDLVF H+GRYYLLD+KSNWL Sbjct: 1139 ASRVDLCA-LDRVIIRHTLDGRERPELAGSYLNGMLKGFIDLVFEHQGRYYLLDWKSNWL 1197 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 G D SAY+ +AM AA+ RYDLQY LY LALHR L+ R+ DYDY+ H GG IY+FLRG Sbjct: 1198 GPDDSAYSPEAMRAAIAERRYDLQYVLYLLALHRQLKARLPDYDYDRHLGGAIYVFLRG- 1256 Query: 1147 DKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 + QG++ RP+ LI +D +FAG Sbjct: 1257 -GQAASQGLFMDRPDRALIETLDRLFAGD 1284 >UniRef50_Q8D2T8 RecB protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2T8_WIGBR Length = 1162 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 402/1177 (34%), Positives = 684/1177 (58%), Gaps = 22/1177 (1%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 L+P+ P++G LIEASAGTGKT++I YLRLLLGL + FP L+V+E+L+ Sbjct: 1 MKKYRKLNPISFPIKGTCLIEASAGTGKTYSIIIFYLRLLLGLNIKS-FPHGLSVKEILL 59 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VT+TE A +L+ RIR I L+ AC+ + +P L +EI + ++ L+ AE + Sbjct: 60 VTYTEFAKNQLKERIRKGIIHLKSACINKDETHP----LFKEIKNVKKSLIKLIYAEHNI 115 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 DEA++FTIHGFC +ML+ N ES ++ IEDES L Q +FW ++C LP I++ Sbjct: 116 DEASIFTIHGFCHKMLSANLIESKFFLDKNTIEDESYLYNQISKNFWEKYCSKLPILISK 175 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVG 241 ++F WK LL+D +++GE P I + +++ + + + I+ +K+ W+ + Sbjct: 176 IIFSYWKDSDFLLKDTLPFIKGEKPTILSSVNKKQSIKNFYYSKIIYINKIKRIWKKLII 235 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 ++ I S+ ++ K + K+I+ I AW+ +T ++ +P ++K + L++ K Sbjct: 236 KMLLKIVSNLMNANK--KEKILKYINIIDAWSNNKTENFDVPIEIKKI-KNLLKNHYKNY 292 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 ++ F +D+ +++L+ +++ ++RE EK+ + +L FDD++ + Sbjct: 293 KNILQNIFFNKVDESYKFYKKLKELIFQKSIIKMREYKKTEKKNQEKLDFDDLIILFKTE 352 Query: 362 LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421 L L+ IR +PVA+IDEFQDTD QY+IF +I++ + +L+LIGDPKQAIY Sbjct: 353 LFK--FNKLSKIIRNIYPVAIIDEFQDTDLIQYKIFFKIYYKKKMCSLILIGDPKQAIYG 410 Query: 422 FRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA 481 FRGADIFTY+K ++++ Y+L TNWRS+ MVN+VN LFS+ + F+++ I F S Sbjct: 411 FRGADIFTYIKIKNKIKNIYSLQTNWRSSVRMVNAVNFLFSRIKNPFIYKNINFDKALSI 470 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLM 541 KN L F + + Q A++ + + G+ +YQ MA+ A +I + + + + L Sbjct: 471 KKNNNLNFFIENKLQSAIEFVMYPKNNIGLHNYQKYMAEQYAIKIYNIINSSDYKKTYLE 530 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 N + V SDI++LVR+R EA ++ A L IP++YLS+ SVF TLEA++++ +L Sbjct: 531 NKYSHKNVIISDITILVRNRTEANFMKIACDKLSIPNIYLSDNSSVFHTLEAKDIIQILN 590 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPML 661 A++ PE EN +R AL T M GL ++I+ LN ++ + ++ EF YR +W K G+M M+ Sbjct: 591 AILFPENENIVRCALLTKMFGLTNVEIQKLNYNKKIFKKIILEFILYRDLWDKFGIMQMM 650 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN 721 ++ +N + ++I+HI E+L E +++++H L++WL I D Sbjct: 651 NYILDNKNYFTMFNKFKKDIKYFSNIIHIVEILHETSKKIKNKHELLKWLYYQITFNDVQ 710 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 + ++R+ + V+I+TI KSKGL++P+V+LPF+++FR ++ +H + ++ +LDL Sbjct: 711 NENHKIRVFDEDKAVKIMTIFKSKGLQFPIVFLPFLSSFRTKKHVLFHSKKKYKLILDLK 770 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 + ++ L++ ERL+ED+RL YVA+TR+++HCS+G+ L K + H++++G + Sbjct: 771 STLKNRKLSDKERLSEDIRLFYVAITRAIYHCSIGICSLSIGNQTKSVMSHTHRTSIGYI 830 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT---LQRLPG 898 +QK + D L+ +E + + N ++ + + N K + Sbjct: 831 IQKRKKSDWNTLKKYLENISFYSKGNISVNLKKNLCKKILKTNFSFFNIKKNIISNKKED 890 Query: 899 DNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSL 958 ++ S+S +++ + + + P+G G F+H + Sbjct: 891 YFFKSISFSYIKKNNFNKLNYIYEHEKENKEKI------YDFNTSFLPKGKIFGKFIHKI 944 Query: 959 FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ 1018 FE L+FT+ +D N ++E L F+ L EWI +++ PLNE +SLS++ +NK Sbjct: 945 FEKLNFTKNIDKNIIKENLVKYEFDLSLTNDLAEWIKNIIKKPLNEDFLSLSRIKQKNKL 1004 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL-EFMQVRGMLKGFIDLVFRHEGRYY 1077 E++FYL I+ + + + LI+++DP+S+ C L + G+L G +DLVF + +YY Sbjct: 1005 TELKFYLSINSKIKEKEFNFLIKKYDPISSKCFCLKNINNINGILTGSVDLVFLWKKKYY 1064 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 LDYKSNWLGE+SS Y ++ M M HRYD+QYQ+Y++A+HRYL+++I YDY HFGG Sbjct: 1065 FLDYKSNWLGENSSFYNKKNMTLEMIKHRYDIQYQIYSVAIHRYLKYKIKKYDYNKHFGG 1124 Query: 1138 VIYLFLRGVDK--EHPQQGIYTTRPNAGLIALMDEMF 1172 + YLF+RG++ + GIY +PN LI +++ F Sbjct: 1125 IYYLFVRGINNLCRKTKNGIYFIKPNYSLINKINKHF 1161 >UniRef50_Q7VRE9 Exonuclease V, beta chain n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VRE9_BLOFL Length = 1208 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 429/1215 (35%), Positives = 688/1215 (56%), Gaps = 50/1215 (4%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + LD L LPL G RLIEA AGTGKT+ + +YLRLLL LG AF +PL+ + +L+VTF Sbjct: 1 MQNLDILYLPLHGIRLIEAPAGTGKTYNLIIIYLRLLLNLGTQTAFSKPLSTKNILIVTF 60 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 T+ A L+ RI+ NI + R+ C++ + NP++ +LL +I D + L +AE++++++ Sbjct: 61 TKTAVHNLKNRIKENIRQFRLDCIQGYSTNPIFSKLLSQIYDINLSINLLRIAEKEINQS 120 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIHGFCQ++L N E MLF+ +IE++ + + C+DFWRR+ Y LP I Q++ Sbjct: 121 AIFTIHGFCQKILVENTIELNMLFDLTIIENKLVPYQKICSDFWRRNFYKLPLNIIQLIQ 180 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDET---LASRHAQIVARIDTVKQQWRDAVG 241 WK P+ LL+DI Y+ + I+ D++ +++ +A I+ ID++K++W + Sbjct: 181 TFWKNPEELLKDIIPYIYNDLTTIQHSKFIDQSHKNISTYYANIIDCIDSIKKEWNTKIQ 240 Query: 242 ELDAL----IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 + D + I + R+K+N+ N +WI+ I+ W+ + T+++ +P L++F L Sbjct: 241 QHDLIKIIYIHNKPNHRKKYNKKNLDRWIEIINQWSIQPTSNHTIPNELKQFRSSVL-II 299 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 K + LF+ I+QL S + L++ + + + + R ++ FDD++ Sbjct: 300 NKNNQNFQKLFLFDLIEQLYRRIESFQLLILHMVMDDFQHNLYNMHYTRSQITFDDLVKL 359 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--HHQPETALLLIGDP 415 L L I ++PV +IDEFQDTD QY+IF ++ H + L+LIGDP Sbjct: 360 LLYNGFKNKNNKLIKNILEQYPVTIIDEFQDTDQNQYKIFHTLYNTHTDQKKCLILIGDP 419 Query: 416 KQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 KQAIY FRGA+IFTYM+ R +H Y L+ NWRS+PGMVN++N+LF Q + F+F++I F Sbjct: 420 KQAIYGFRGANIFTYMQIRQSLHYKYYLNINWRSSPGMVNAINQLF-QVPNPFVFKDISF 478 Query: 476 IPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQR 535 IP + KN +F+ + Q + WL E + +Y++ MAQ C+ +++ L Sbjct: 479 IPSIPSYKNNKHQFLIHNQLQSPLCFWLYSHECITMNNYKTIMAQECSIVLQNLLYNIHN 538 Query: 536 GEALLMNGD-DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 A L N + ++ SDI++LVR+ EA+ +R L IP+ +LS+R ++FET+E+ Sbjct: 539 KTAWLENNICKKKILQTSDIAILVRNHSEASLIRSELLKRNIPTTFLSSRRNIFETIESY 598 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRK 654 E+L L++A++ P+ + T+ +AL T NA D+E ++N+ W+ + +EF Y IW+ Sbjct: 599 ELLLLIRAILFPKLD-TICTALTTIFFKFNATDVENIHNNTFRWEQIFKEFSEYYLIWKN 657 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQH 714 ++ M++ ++ I E LL+ + L +ILH+ ELL + Q S+H+L++WL + Sbjct: 658 NNILSMIKKILFRYKIPETLLSNPSEKNSLINILHLGELLNDFSKQCHSKHSLMQWLEYN 717 Query: 715 I---LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI-----TNFRVQEQA 766 I + +A ++R D HL++I TIH+SKGLE+P+ +LPFI T Q Sbjct: 718 IYYPQNQNQSAEHHKLRFNDDHHLIKISTIHQSKGLEFPITYLPFISCYTNTKRFSNNQK 777 Query: 767 FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP--LVRRR 824 +L + ++D + ERL+EDLRLLYVA+TRS++HCS+G+AP R Sbjct: 778 IL----QSTPYANLLQSSSTLDFFDLERLSEDLRLLYVAITRSIYHCSIGIAPIIYKSRH 833 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC---DDDIAWQTAQTG-------- 873 + TD+H SALG L+Q +P L+ C++ L + +I ++ Sbjct: 834 KNTLHTTDLHHSALGYLIQNKKPNTPQELKQCLQKLSISSNKNITFRIISKISKKSKLYC 893 Query: 874 DNQPWQVNDVSTAELNAKTLQRLP-----GDNWRVTSYSGLQQR-----GHGIAQDLMPR 923 + T L+AK Q+ + WR TSYS L++ ++ Sbjct: 894 NCTKTINITNQTKSLHAKKWQKPILWKTYNNIWRYTSYSELKKNIITDSSSTEYLNIQNI 953 Query: 924 LDVDAAGVASVVEEPT--LTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGG 981 D + + + P+ LT H FP+G G F H LF+ L+F + ++ ++ +E Sbjct: 954 FDFNFDDYINNKKTPSNLLTAHTFPKGKVCGMFFHDLFKFLNFRKTINTRSLQTHMERYN 1013 Query: 982 FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 W L +WI ++ P+N ++LS++ N Q E++F L I L +LD L + Sbjct: 1014 INLNWTIPLQKWIYTIINTPINSDYLTLSKIIPENTQTELKFSLCIKNTLTPHKLDKLCK 1073 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 +DPLS P L F V G+L GFIDL+F + +YYLLDYK+NWLG +++ YTQ + Sbjct: 1074 YYDPLSLRAPILNFETVTGILHGFIDLIFYWKNKYYLLDYKTNWLGNNNNFYTQTMIEKN 1133 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 M +RY+LQYQLYT+ALHR+L+H+I Y YE +FGGV YLF+RG++ GIY RP+ Sbjct: 1134 MIQYRYELQYQLYTIALHRFLQHKIQSYTYEKNFGGVYYLFIRGMNGLSFNNGIYFCRPS 1193 Query: 1162 AGLIALMDEMFAGMT 1176 I +D + Sbjct: 1194 WEFIKTLDYFISKKN 1208 >UniRef50_A4VRQ5 Exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VRQ5_PSEU5 Length = 1182 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 407/1204 (33%), Positives = 581/1204 (48%), Gaps = 65/1204 (5%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD L P G LIEASAGTGKT+T+ ALY RLLL R L+V ++LVVT+T A Sbjct: 3 LDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLL--------ERQLSVGQILVVTYTTA 54 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 ATAELR RIR+ + +L + + RL D A + + LLLA DEAA+F Sbjct: 55 ATAELRERIRARLADLLAVYDGTPSSDDFLNRLHARYPDDA-SRRRLLLAVHGFDEAAIF 113 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 TIHGFCQR L AFE+G F+ +L D+ + AD WR A+ + ++ Sbjct: 114 TIHGFCQRALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELADADPAWARFLAKSR 173 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI 247 PQ L + + +L ++ R + +Q A + L+ Sbjct: 174 ITPQWLRQRLRSHLGKPYLRVEPQGAPVAADLRPVEAAWQRAAELWKQAGTAW--IAELL 231 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH 307 G+ + A W ++ A+ + + LPE KF R L K G + P Sbjct: 232 THGGLSQSTHKSVKFAPWQAELDAYFADPAVMFDLPEGAAKFGVRALSKACKKGFDAPVC 291 Query: 308 PLFEAIDQLLAEPLSIRDL-------VITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 L +A+D+L + + L + + K + L FDD+L+RLD Sbjct: 292 ELAQALDELADQVADALPAGKQRLIALQVALLERLNRELPERKAAQRLLAFDDLLNRLDQ 351 Query: 361 ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY 420 AL+ GE LAA++R +P+A+IDEFQDTDP QY IF RI+ + +L +GDPKQAIY Sbjct: 352 ALQGPVGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGRDASLCFVGDPKQAIY 411 Query: 421 AFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 AFRGAD+ TYM A+ + + L TN+RS P ++ ++N+LF F ++ + PV Sbjct: 412 AFRGADLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFDH-PQPFAQPDLRYPPVG 470 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 +A K +A + + + + + + G GD A A +I L A G A Sbjct: 471 AADKPRASLRLAEEGEAAPLSLVWLGDDPLGKGDAAQLAASDTARRIAVQLAAAAEGRAG 530 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 P++ DI+VLV + ++A + D L +PSV RDSV+ + EA E+ + Sbjct: 531 FDKDGGFAPLKGGDIAVLVANHRQAGMIADELAARGVPSVR-RGRDSVWRSEEAGELAAV 589 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 L A P RE LR ALAT ++G +A D+ +D+H WD E + Y Q+W+++G M Sbjct: 590 LAAYAEPGREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYHQLWQQQGFMR 649 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719 + RA + + +AE LLA GERRLT++LH+ ELLQ L+ W + + Sbjct: 650 VFRAWLDEQAVAERLLARVDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQR-GSE 708 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFE 775 +RLESD VQIVTIH SKGLEYPLV+ PF+ + + Q+ A HD Sbjct: 709 GAGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNQDSARCHDADGQP 768 Query: 776 AV-LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD-- 832 + L ++++ A E AE LRL YVALTR+ L P+ + K G Sbjct: 769 LLDLGSGELEDNLERARQEVFAEQLRLAYVALTRARDRLWLHWGPVSLPKAKKDGSLPDE 828 Query: 833 -VHQSALGRLLQKGEPQDAAGL------------------RTCIEALCDDDIAWQTAQTG 873 +H SAL LL E L + A D +A ++ Sbjct: 829 GLHSSALAWLLHGRELPGEQPLTELGNHLASLNGGSLRLAIERLVATSDGRMACLPLESR 888 Query: 874 DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVAS 933 + + + E A+ L R WR+ S+SGL H A D DA Sbjct: 889 EASTQGSSRAAPPEQLAQ-LNRSLYSAWRIGSFSGLAAGMHMEAPDRDALAMPDAG---- 943 Query: 934 VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW 993 EP FPRGA GT LH++ ED + V L+ G W V T Sbjct: 944 ---EPGSGFFAFPRGARAGTCLHAILEDWARGKGELAQLVEPALKAYGLPLDWRDVATAQ 1000 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ----FDPLSAG 1049 + VLQ L+ G++L+ L A + E+ F P+ E + L PL Sbjct: 1001 LERVLQTDLDGAGLTLASLLAARRLPELGFTFPVRELDVVRLRALLTDPANGLAAPLREA 1060 Query: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 LEF ++G LKGFIDL F H GR+Y+ DYKSNWLG D+S Y + + A+ Y L Sbjct: 1061 AARLEFDSLKGFLKGFIDLTFEHGGRWYIADYKSNWLGPDASYYGGERLLQALAGEHYYL 1120 Query: 1110 QYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 QY +Y +AL R+LR R+ D+ + GG YLFLRG+ P+ G+Y RP+ L+ +D Sbjct: 1121 QYLIYLVALRRFLRQRLTDFR-DEQLGGAFYLFLRGM----PEAGVYFARPDDALLDGLD 1175 Query: 1170 EMFA 1173 +F Sbjct: 1176 RLFE 1179 >UniRef50_C3X2X2 ATP-dependent exoDNAse beta subunit n=2 Tax=Oxalobacter formigenes RepID=C3X2X2_OXAFO Length = 1253 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 411/1262 (32%), Positives = 595/1262 (47%), Gaps = 111/1262 (8%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M V E D PL G RLIEASAGTGKT+ I LYLRLLL + V E+L Sbjct: 1 MKPVNE-FDVFSCPLYGWRLIEASAGTGKTWNIGGLYLRLLL--------EKKREVREIL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIAC--LRETTDNPLYERLLE----EIDDKAQAAQWL 114 VVTFT AAT ELR RIRS I TD+ E+LLE DD + L Sbjct: 52 VVTFTRAATDELRDRIRSRIGRALAYLEGRAADTDDGFVEKLLEKRMAAGDDPQEMTALL 111 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA + D+AA+FTIH FCQR L L+AF SG F + D+S L +A DFWRRH Sbjct: 112 RLAFQSFDQAAIFTIHSFCQRALALSAFSSGQAFSVKAEADDSELVREAVNDFWRRHVAG 171 Query: 175 --LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA---QIVARI 229 L ++ + + P L + R+L +K P E + ++ A Sbjct: 172 GRLSPALSAWLEKKRFTPDRLEALLRRHLARPLATVKWPETAPEAPEAAEDGSGKLEATF 231 Query: 230 DTVKQQWRDAVGELDALIESSG----IDRRKFNRSNQAKWIDKISAWAEEETNSYQL--P 283 W + AL++ + + R ++ + + Sbjct: 232 HMAASCWTSEKETVKALLKDAAERNVLYRNRYKAPAIESAARAFDRFFAAGNAFAMIGNT 291 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA-------EPLSIRDLVITRALAEIR 336 E + L TK G PRHP F D+L+ + R ++ R LAE Sbjct: 292 AKTELMADTRLSGSTKKGQTVPRHPFFGMADRLIETCRKRENALEAARYGLLKRFLAEAT 351 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 ++ +KR R + FDDML+ L AL LA A+R +FP A+IDEFQDTDP QY I Sbjct: 352 VSLKEKKRERRTIAFDDMLANLYEALNDPGMPWLAEAVRMQFPAALIDEFQDTDPLQYAI 411 Query: 397 FRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGMV 454 F ++ PE+ + L+GDPKQAIY+FR AD+ TY AR + A Y+L N RS P ++ Sbjct: 412 FSAVYRE-PESPVFLVGDPKQAIYSFRNADLHTYFAARENLDALARYSLAENHRSVPELI 470 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ---PAMKMWLM---EGES 508 + N LFS AF+ + F+PV+ + + G+ PA+ +W++ GE Sbjct: 471 AACNTLFSVNKRAFLQDGLDFVPVRPGKRELPVLTDESGDGPGPFPALCVWMLGQENGEW 530 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 + + A ++ + AG+ G+ + RP A D++VLVRS +EAA VR Sbjct: 531 LKRSAARKQALEAMADEVARLINAGKAGKLAI----GGRPAGAGDVAVLVRSHREAAMVR 586 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 AL I SV LS +SVF++ EA+E+ LL A++TP+ E+ L +A++T M+GL+A I Sbjct: 587 QALARRGIGSVSLSQ-ESVFQSREARELECLLFAMLTPDDESLLMAAVSTEMIGLDAGAI 645 Query: 629 ETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 E L DE A + F YR+ WR+ G LR L+ + LLA A GERRLT+++ Sbjct: 646 EALAGDEAALSGWIGRFGQYRRAWRENGAACALRWLIHREGVVSRLLAFADGERRLTNLM 705 Query: 689 HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 H+ EL+ + +L+RW ++ A +++RLE+D+HLVQ++T+H+SKGLE Sbjct: 706 HLLELVGRESGTENAPDSLMRWYAERREGK-KKAEEEELRLETDRHLVQVMTLHRSKGLE 764 Query: 749 YPLVWLPFITNFRVQ------EQAFYHDRHSFEAVLDLNAAPESVDLAEA---ERLAEDL 799 +P V+ P + + + E YH+ H+ A E + + ER AED+ Sbjct: 765 FPFVFCPLLWDNFPRRGNETGEGLEYHEGHATVVDYRKLADDEQETVRKNAALERAAEDM 824 Query: 800 RLLYVALTRSVWHCSLGVA----PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 RL+YVALTR+V+ C L R + K T+ +S L L+ L Sbjct: 825 RLIYVALTRAVYRCYLVAGCYVRVTRRGESETKTTTESRKSLLNWLVAGDGFAPPDWLAA 884 Query: 856 -------------------CIEALCD--DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 E+L IA +D + L A Sbjct: 885 KDGKKEETVLLPEPEQIGSAWESLASRCPHIAVTALPDSVGATVDASDETATLLTAARFD 944 Query: 895 RLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE-EPTLTPHQ----FPRGA 949 + G WR+ S+SGL + + AG++ + E P P FP+G Sbjct: 945 KTVGTGWRMNSFSGLMRNAVDDTETGDHDERALFAGLSGLSENRPEALPANDILLFPKGT 1004 Query: 950 SPGTFLHSLFEDLDFTQPVDPN-WVREKLELGGF---------ESQWEPVLT----EWIT 995 G+ LH++FE+ DFT V L+ + + VL + + Sbjct: 1005 YAGSCLHAVFENADFTDESTWEKAVESALKQFPQRVGGKLLSGAEEGQAVLKGRALKMLG 1064 Query: 996 AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF 1055 V+ PL + G+ L + + E F L + L A +L+ L+++ P L F Sbjct: 1065 DVMATPLPD-GICLGNVGNGRRLTEWPFCLAAAR-LSAKRLNRLVKK---SGYAVPELAF 1119 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 + L GF+DLVF +GR+YLLD+KSN LG Y + M H Y QY LYT Sbjct: 1120 DDMTAYLNGFVDLVFEMDGRFYLLDWKSNHLGYRPEDYGIARIETEMAEHGYHWQYLLYT 1179 Query: 1116 LALHRYLRHRIADYDYEHHFGGVIYLFLRGV-----DKEHPQQGIYTTRPNAGLIALMDE 1170 +ALHRYL R+ DYDY HFGGV YLF+RGV + + G++ +P + +D Sbjct: 1180 VALHRYLSGRLPDYDYGRHFGGVFYLFVRGVRPDWKNGDGTPSGVFFHKPGQETVEAIDR 1239 Query: 1171 MF 1172 + Sbjct: 1240 LL 1241 >UniRef50_A9BRA9 Exodeoxyribonuclease V, beta subunit n=4 Tax=Comamonadaceae RepID=A9BRA9_DELAS Length = 1274 Score = 843 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 458/1266 (36%), Positives = 628/1266 (49%), Gaps = 108/1266 (8%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-------GSAAFPRPLTV 56 + LD R PL G RLIEASAGTGKT+TIAALYLRL+LG G S AF RPL Sbjct: 11 TSHVLDAQRFPLWGSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMP 70 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEIDD---KAQA 110 ++LV+TFT AAT EL RIR + E E + L E + + +A Sbjct: 71 PDILVMTFTRAATRELSDRIRKRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERA 130 Query: 111 AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRR 170 A L +A MD+AA+ TI +CQRML +AF+SG LF++ L DES + +A D+WR+ Sbjct: 131 AWRLAMAAECMDDAAIHTIDAWCQRMLREHAFDSGNLFDETLEPDESQRQTEAAQDYWRQ 190 Query: 171 HCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 CYPL E+ V + W AL+ D+ L+ + L Q +R+ Sbjct: 191 QCYPLSDELLDEVLKIWPHVGALVDDMRALLREPPVPGAGEGSLADCLQRAMEQRRSRLL 250 Query: 231 TVKQQWRDAVGELDALI------ESSGIDRRKFNRSNQAKWIDKISAWAEE--ETNSYQL 282 + W D L + + D+RK + W+ ++ W+ + Sbjct: 251 ALAAGWDDKAQRLQLWLDGQLDGHGALWDKRKLQPARYTGWLAALADWSRAPLDGPLALT 310 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD----LVITRALAEIRET 338 + + S L + K PL A Q L L V A A + + Sbjct: 311 EAARHRLSPEGLAEAFKGSAGDVLMPLELAELQALLLQLEQLPPVSVAVRLHAAARVAQR 370 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 +A KR+ G GF DML RLD+AL ++G VL I ++PVA+IDEFQDT P QYR+F Sbjct: 371 LAHLKRQAGSFGFADMLQRLDTALAGDNGAVLRERILAQYPVALIDEFQDTSPLQYRLFD 430 Query: 399 RIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMV 454 +I+ + P +ALLLIGDPKQ+IY FRGADI +Y++AR HY L TN+RS +V Sbjct: 431 QIYRTAANDPHSALLLIGDPKQSIYGFRGADIHSYLQARRATEGRHYVLGTNYRSTEALV 490 Query: 455 NSVNKLFSQTDDAFMFRE----------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 +VN F+Q + +PF PV + G+++ L G W Sbjct: 491 GAVNHWFAQAEQRSGEGAFMFRRGSHNPLPFEPVAAQGRSEQLH-TRDGAMHALTVAWSA 549 Query: 505 EGESC-------GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + + + A CA QI WL Q G + +R +DI+VL Sbjct: 550 GRDEDTGIPLPLAADEVRRRFAAHCAEQIVQWLTDPQAG--FVQPDGRLVRLRPADIAVL 607 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 VR+ +EAA VR L + SVYLS++DSVF + EA ++L+ L+AV P +R+ LA Sbjct: 608 VRTGREAAAVRRELQARAVASVYLSDQDSVFASDEAHDLLYWLRAVAAPLDAQAVRAGLA 667 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 T ++GL+ ++ L DE A+D E+ IW + GV+ MLR + ++ L Sbjct: 668 TRLIGLSLDELAWLAADEEAFDARSEQLRELHSIWLRLGVLAMLRQTLYRLDLPVRWLQD 727 Query: 678 A--GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GGERRLT+ LH++ELLQ A QLE E AL+RWL+ I P S + Q +RLESD L Sbjct: 728 PAMGGERRLTNYLHLAELLQTASAQLEGEQALIRWLATQIETPGSGSEEQVVRLESDADL 787 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-----------YHDRHSFEAVLDLNAAP 784 V++VT+HKSKGLEYPLV LPF +FR E+A D + L L+ + Sbjct: 788 VKLVTVHKSKGLEYPLVCLPFAGSFRPMERARTPFLTLSAQDESQDDAAPARRLLLDFSD 847 Query: 785 ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK 844 E + A+ ERL EDLRL YVALTR LG+APL R G + Q A G LL Sbjct: 848 EELAQADRERLREDLRLFYVALTRPRHALWLGLAPLKRGNGKACVN---EQGAAGYLLGG 904 Query: 845 GEPQDAAGLRTCIEALCDDDI--AWQTAQ--TGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 EP+ A G R ++ LC +D AW+ WQ +T +A Sbjct: 905 TEPRSAQGWRDGLQQLCGEDPHMAWRDLDAVPLQRTRWQPPAGATPLHDAPAYDARFDTR 964 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT------------------- 941 W + S+S L + + ++P A +E P Sbjct: 965 WGIGSFSALVRAMAAPSLPVLPVAVQRPAEDEQALEPPPSPELADIAGLAGLQPLQDGPA 1024 Query: 942 -----PHQFPRGASPGTFLHSLFEDL---DFTQPVD-----PNWVREKLELGGFESQWEP 988 H+F RG G F+H E L DF PVD + + + E G Q Sbjct: 1025 GGPAVWHRFLRGPVVGNFVHDQLEWLGGEDFALPVDGQGALADRLVRRCERAGRGEQARD 1084 Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 +L W+TAV+ PL V+L+ L + EMEF+LP + L A ++D L R+F Sbjct: 1085 LLA-WLTAVVHQPLAPLDVTLATLGPQ--LSEMEFWLP-ARQLPAERIDQLCRRFILPGQ 1140 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 P L + GML GF DLVF HEGRY++LDYKSN LG D +AY Q+A+A AM HRYD Sbjct: 1141 ERPALPQRSLHGMLMGFADLVFCHEGRYWVLDYKSNHLGPDGAAYGQEALARAMLHHRYD 1200 Query: 1109 LQYQLYTLALHRYLRHRI-ADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIAL 1167 +Q LY LALHR LR R+ Y+ + GG +Y FLRG+D P G++ P L+ Sbjct: 1201 VQAALYLLALHRLLRSRLGTAYEPQRQLGGALYYFLRGIDG--PAGGMHAMAPELPLLDA 1258 Query: 1168 MDEMFA 1173 +DE+ Sbjct: 1259 LDELLG 1264 >UniRef50_Q5QUQ8 ATP-dependent exoDNAse (Exonuclease V) beta subunit n=2 Tax=Idiomarina RepID=Q5QUQ8_IDILO Length = 1241 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 438/1234 (35%), Positives = 630/1234 (51%), Gaps = 78/1234 (6%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFP-----RPLTVEELLVVT 63 +PL PL RLIEASAGTGKT+TIAALY+RL++G G R L + +LV+T Sbjct: 19 NPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGAEETAFDRELVPKNILVMT 78 Query: 64 FTEAATAELRGRIRSNIHELRIACLRET--TDNPLYERLLEEIDDKAQ----AAQWLLLA 117 FT+AAT EL RIR+ + E +P L E+ + Q A+ L LA Sbjct: 79 FTKAATEELSDRIRARLAEAAAYFRDPEAVEGDPFLASLREDCAAQGQNLMHLARLLDLA 138 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 + MDEAAV TIHG+CQ ML +AF SG LF Q + D LR QA D++RR YP Sbjct: 139 SQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEELRLQAAGDYFRRFIYPADA 198 Query: 178 EIAQVVFETWKGPQALLRDINRY-LQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 E++ + E +K P+ LL G+AP+ S H Q + I Sbjct: 199 ELSARLLEDFKSPETLLGLTYSLSKSGQAPIDGDLHSLLNEAESAHQQRMVAIKQEVAPI 258 Query: 237 RDAVGELDALIESSGIDRRKFNR-SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 + + + + + ++F + ++ D + A + L+KF+ L Sbjct: 259 VQELVDKTSQAKGAATKLKQFQKFADWCGDPDLVEPEATAANWKNISTDELQKFADAKLG 318 Query: 296 DRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDML 355 D ++ L E I + + V A + A + +R E+G DDML Sbjct: 319 DMPQSWA--VLGELQERIKRSKVQQQEELAKVKQHAAFWVSNRFAELQNQRAEMGHDDML 376 Query: 356 SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLI 412 +RL AL+ SGE LAAAIR ++PVAM+DEFQDTDP QY IF RI++ P T + LI Sbjct: 377 TRLRDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIYNLADPHPGTGIFLI 436 Query: 413 GDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPGMVNSVNKLFSQTD----DA 467 GDPKQAIY+FR ADI+TY+KAR + HY L N+RS+ MV+ VN LF + + A Sbjct: 437 GDPKQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVDGVNALFERAEELPRGA 496 Query: 468 FMFR-----EIPFIPVKSAGKNQALR---FVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 F+F+ ++PF PV + G + + +T PA+ + E + A Sbjct: 497 FLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSVSGEEKRNKDTFFRAAA 556 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 A I L Q G + + V+ SDI+VLV + EA ++ AL+ + SV Sbjct: 557 NHHANLIASLLNDPQAG-YYDGDDKLEQRVKTSDIAVLVNNFNEANAIKKALSDRGLKSV 615 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 YLS+R+SVF A+++L L+ A P + +RSALAT ++GL ++E +++ E W+ Sbjct: 616 YLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQILGLPLSELEHIHSHEREWE 675 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA-TAGGERRLTDILHISELLQEAG 698 VE+F Y W+++GV+ ML +L+ + LL GER+L+D+LHI+ELLQ+ Sbjct: 676 QRVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLEDRIHGERQLSDVLHIAELLQQQS 735 Query: 699 TQLESEHALVRWLSQHILE-------PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 L+ ALV ++ + E + + QQ+RLESD L++I+TIHKSKGL+YPL Sbjct: 736 LVLDGIPALVNHFAEQVNERHGFGSNSRTQSDEQQLRLESDDELIKIITIHKSKGLQYPL 795 Query: 752 VWLPF-----ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVAL 806 V++PF +R++ A YHD + VL + ++ E LAEDLR +YVA+ Sbjct: 796 VFMPFVAYTQAEAYRIKPPAVYHDENGELQVL-WSKDDDNKQRLSNEILAEDLRKMYVAV 854 Query: 807 TRSVWHCSLGVAPLVRRRGDKKGDT-DVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI 865 TR+ + + + + R + + +S L + + T + L DD+ Sbjct: 855 TRAQYATFIALEAVKEHRNNPLFYLLNGGESLTDELYTEVNERWQQAPHTQLTRLEDDEP 914 Query: 866 AWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ------- 918 + + P A+ + W V SYS L+ G Sbjct: 915 LVRALEQEQTTPKLTPRSMPAD--------RKLERWWVASYSALKYEGAVTKSVQAPQSP 966 Query: 919 ---DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE---DLDFTQ-PVDPN 971 +L+ D D A VAS E + H P+GA PGTFLH+L E ++ F Q D Sbjct: 967 DEMNLLDERDDDEAEVASAAEPSPDSIHHLPKGAGPGTFLHNLLEESANIGFAQIAGDAA 1026 Query: 972 WVREKLELGGFESQWEP---VLTEWITAVLQ--APLNETGVSLSQLSARNKQVEMEFYLP 1026 E ++ W+ L W+ A L P+N++G S+S + + E EF+ Sbjct: 1027 ERAELVQGFCVSPYWQEHQNSLEHWLDAYLHNEFPINDSGESVSLSALEQYKAEPEFWFG 1086 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 SE + A +LD L+R+ P LE + GMLKGFIDLVF H G+YY+ DYKSNWL Sbjct: 1087 ASE-VNAQRLDALVREHILPGHERPALEPNVLNGMLKGFIDLVFEHNGKYYVADYKSNWL 1145 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLFLRG 1145 GED AYT+QAM + RYDLQY +YTLALHR L+ R+ DYDY+ H GG +YLFLRG Sbjct: 1146 GEDDHAYTEQAMREKILHSRYDLQYVIYTLALHRLLKARLGSDYDYDTHVGGAVYLFLRG 1205 Query: 1146 VDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 E G + RP LI +D +FAG L + Sbjct: 1206 HRAETG--GAFCDRPPRKLIEQLDTLFAGKNLSD 1237 >UniRef50_C7I4N6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I4N6_THIIN Length = 1202 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 417/1234 (33%), Positives = 601/1234 (48%), Gaps = 91/1234 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEEL 59 M+ + E LD L LPLQG RLIEASAGTGKT+TIAALYLRL+LG G A AF RPL+ E++ Sbjct: 1 MTAIPEPLDALTLPLQGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQI 60 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRE---TTDNPLYERLLEEID---DKAQAAQW 113 LV+TFT AAT EL RIR+ + E D+ RLL+ + AA Sbjct: 61 LVMTFTRAATRELAERIRARLVEAAQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAWR 120 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L +A + MD+AAVFTI +CQRML +AF+SG F++ L+ DE L QA DFWR+ Y Sbjct: 121 LAMAAQAMDDAAVFTIDAWCQRMLREHAFDSGHSFDEDLLADEGELTTQAVHDFWRQQVY 180 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQI----VARI 229 PL V + W AL ++ L+ D++L ++ A++ Sbjct: 181 PLSGAALDGVLQVWPDVGALEGEVKSRLRAAQAGAPPVADKDDSLLDLWQRLGEPQQAQV 240 Query: 230 DTVKQQWRDAVGELDALIESS------GIDRRKFNRSNQAKWIDKISAWAEEETNSYQ-- 281 T+K QW + V + + + + + K+ + W D + AW ++ Sbjct: 241 RTLKAQWAERVASMRQWLCALVQSEVNPLSKNKYGLKSVCGWFDALQAWLDDPAQQQPGL 300 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRET 338 ++ K + L G + +F ++ L A + DLV T A A++ Sbjct: 301 DDKAWAKLTPDGLRAGCNQGKQVEPPAVFNEVEMLRAALADLADLVPELQTYAAAQVDAR 360 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 + K G+ F D L RLD+AL GE L A I ++PVA+IDEFQDT Q+ +F Sbjct: 361 LRVLKAASGQFSFHDQLERLDAALAGPQGERLRARILEQYPVALIDEFQDTSALQFSVFD 420 Query: 399 RIW----HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT-LDTNWRSAPGM 453 R++ +A+LLIGDPKQ+IYAFRGADI +Y++AR ++ L TN+RS + Sbjct: 421 RLYSITTAQTTHSAVLLIGDPKQSIYAFRGADIASYLRARQATQGRHSALQTNYRSTAEV 480 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----- 508 V+SVN+LF + + + + ++ + + F+ G A ++ EG Sbjct: 481 VHSVNQLFERREQSAGAGAFLYRDDEAPDADNPVPFIAVGARGRAEQLICSEGPVHALTC 540 Query: 509 ------CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 D + A AA+I L Q G +R SDI+VLVR Sbjct: 541 AVHQALESKRDARERFAAHSAARIVSLLNDTQVG--FRQADGGFARLRQSDIAVLVRDGD 598 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 EA +R AL + SVYLS+RDSVF + EA ++L L+AV P R+A A +G Sbjct: 599 EARAMRRALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLG 658 Query: 623 LNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 ++ L D+ +D + + IW ++GV+PMLR + ++ L+ GER Sbjct: 659 ATIAELAALATDDDVFDNRLALLAELQAIWLRQGVLPMLRQTLHRLDLPARWLSEEDGER 718 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 RLT++LH++ELLQ A L+ E AL+RWL + + + Q +RLES+ LV++VTIH Sbjct: 719 RLTNVLHLAELLQTASGALDGEQALIRWLQEQMAGQST--EEQVVRLESEADLVRVVTIH 776 Query: 743 KSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 KSKGLEYPLV+LPF T F+ + + ERL EDLRLL Sbjct: 777 KSKGLEYPLVFLPFATAFKEAKDG----------------------ADDRERLREDLRLL 814 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVALTR+ +G+A L +G +H+SA+G LL P + A + + Sbjct: 815 YVALTRARHALWVGIAALKVGKGSVC---MLHRSAIGYLLGGDTPCEGAAIPGLLRETFG 871 Query: 863 DDIAWQT---AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR--GHGIA 917 D A Q AQ + Q Q + A + NW + S+S L + Sbjct: 872 DSPAVQIVDAAQEAELQRLQAAHPAQALIEPPNYHAQFERNWSIGSFSALVRDLTPRSTQ 931 Query: 918 QDLMPRLDVDAAGVASVVEE--------PTLTPHQFPRGASPGTFLHSLFEDLD-----F 964 Q + D E P+ H+FPRGA G F+H L Sbjct: 932 QPALQAALQDELWATEPSMEQPSPATLQPSAARHRFPRGALVGKFVHEQLAWLGENGFAL 991 Query: 965 TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 + + + ++ G+++ L EW++ VL PL G +L ++ EMEF+ Sbjct: 992 SAQQTQDNLLQRCARQGWDAPRSADLLEWLSEVLATPLPPLGAALPEI--DTLLAEMEFW 1049 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 LP+ A+++D L +Q P L + GM+ GF DLVF H GRY++LDYKSN Sbjct: 1050 LPVDRA-RAAEIDALCQQHILPGRARPELTERTLHGMVMGFADLVFHHAGRYWVLDYKSN 1108 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLY-TLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 LG D + YTQQ + AA+ HRYD+Q LY YD + GG I LFL Sbjct: 1109 VLGTDDADYTQQVLEAAVLEHRYDVQCALYMLALHRLLRARLRTAYDPQTQLGGAIDLFL 1168 Query: 1144 RGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTL 1177 RGV P+ G P+ L+ +D +FA Sbjct: 1169 RGVRG--PRSGCVHIPPDGVLLDALDALFAKREE 1200 >UniRef50_C5JAU7 Exodeoxyribonuclease V, beta subunit n=1 Tax=uncultured bacterium RepID=C5JAU7_9BACT Length = 1228 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 452/1246 (36%), Positives = 631/1246 (50%), Gaps = 99/1246 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L PL PL G RLIEASAGTGKT+TIA LY+RL+LG G + PLT E+L Sbjct: 1 MTGLPPELQPLDFPLVGNRLIEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEIL 60 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTD----NPLYERLLEEIDDKAQ--AAQWL 114 VVTFT AAT ELR RIR+ + E TD +PL L +A A+ L Sbjct: 61 VVTFTRAATRELRERIRARLAEAAACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARRL 120 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA MDEA+V TIHG+C RML +AF+S F ++L D+ L + D+WR H P Sbjct: 121 QLAAEWMDEASVETIHGWCHRMLQEHAFDSDTPFTRELAADQRALLTEVVRDYWRIHLAP 180 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 L R A +F+ W L ++R + + ++ AP P L R+ R+ +K+ Sbjct: 181 LSRVAAAELFDCWPKIDRLQAGVSR-IFRQVGLLAAPEPFAALLEERYQA-RTRLVEMKR 238 Query: 235 QWRDAVGELDALIESS----GIDRRKFNRSNQAKWIDKISAWAEEETNSY--QLPESLEK 288 ++ + L AL++ + ++ RK W+D ++AW + + + + Sbjct: 239 RFVGWLPALQALLDEAVARKWVNGRKLQVRYYQPWLDLLAAWCADARQPFPAWSDAAWWR 298 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS---IRDLVITRALAEIRETVAREKRR 345 + L + K G+ P HP+F A++ L E + + ++ A + E A EK Sbjct: 299 LTPAGLAEAWK-VGQPPAHPVFLAVETLHGEQVRWSMLCQRLLVHAAHWVAERFAAEKAG 357 Query: 346 RGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-- 403 + FDD+L RLD+ L+ +G LAA +R +FPVA+IDEFQDTDP QYRIF I+ Sbjct: 358 LACMEFDDVLLRLDAGLQGPNGARLAALLRRQFPVALIDEFQDTDPVQYRIFAAIYRDLA 417 Query: 404 --QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-TLDTNWRSAPGMVNSVNKL 460 TAL+LIGDPKQAIYAFRGADI TY+ AR + TL N+RS MV +VN+L Sbjct: 418 GADDGTALVLIGDPKQAIYAFRGADIHTYLAARRALAGRIDTLGRNFRSTAAMVQAVNRL 477 Query: 461 FSQTDDAFMF----------REIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 F+ + IPF PV + G+N V G +QPA+ + Sbjct: 478 FAAAETRSGGGAFLQRVAGEDPIPFFPVTAQGRNDLW--VVDGVSQPALTLAW------- 528 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRD 569 G+ ++ MA CA+++ LQ GQ G A GD + P+R D++VLV+SR E A +R Sbjct: 529 SGEPRAWMADACASEMVRLLQLGQEGRAGFRAGDGSLTPLRPVDLAVLVQSRAEYALLRA 588 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL + VYLS+++SVF + A EM L A PE LR+ALAT+ +G+ L+I+ Sbjct: 589 ALARRGVRCVYLSDQESVFASPCAFEMRHWLAACAAPEDTVLLRTALATATLGVGWLEID 648 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA-----GGERRL 684 L DE + + +F G R+IWR++G++PMLR L+ + LLA GER L Sbjct: 649 ALGRDERLLEQRMRQFVGLREIWRRQGLLPMLRRLLHEFAVPSRLLAGEIDGERSGERLL 708 Query: 685 TDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ---MRLESDKHLVQIVTI 741 TDILH++ELL E E A++R+L + + + D A + RLESD LV+IVT+ Sbjct: 709 TDILHLAELLGGQAVAGEGELAVLRFLDEALRQADEGAREESERLSRLESDADLVRIVTV 768 Query: 742 HKSKGLEYPLVWLPFITN-FRVQEQAFYHDRHSFEAVLDLNAAPESVDLA--EAERLAED 798 HKSKGLEYPLV++PF + V + H V L A + LA + ERL E+ Sbjct: 769 HKSKGLEYPLVFVPFAGSCRPVSARDLPMRGHDDAGVEQLLFAADEAQLARLDLERLREE 828 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 R LYVALTR+ + +GV R SAL LL E AG+ + Sbjct: 829 TRRLYVALTRARYAVWVGVVLERR----------FANSALHALLGGPEELSEAGIAALLM 878 Query: 859 AL--CDDDIAWQTAQTGDNQPWQVNDV----STAELNAKTLQRLPGDNWRVTSYSGLQQR 912 L D I A + +Q +D + A+ +R D W + SYS L Sbjct: 879 PLNRADGTIVATPAPAPEWHRFQPHDGEGTGAAWRGGARQARRRVRDPWWMASYSALLAP 938 Query: 913 GHGIAQDLMPRLDVDA--------------AGVASVVEEPTLTPHQFPRGASPGTFLHSL 958 +A + + + + H FPRGA GT LH L Sbjct: 939 LGPMAPNAPESPGEAQFRELALERFVPPAPSDGSGASDGGEAGLHTFPRGAKAGTVLHEL 998 Query: 959 FEDLDFTQ--------PVDPNWVREKLELGGFESQWEPVLTEWITAVLQA--PLNETGVS 1008 V +LE G+ + W LT W+T L L+ +G + Sbjct: 999 LAWCGVCGFGAVAADSERVRQEVARRLEPRGWSA-WRDPLTRWLTTFLTTRFELSGSGGA 1057 Query: 1009 L-SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 L + QVEMEF+L + L +QLD PPL+ + GM+KGF+D Sbjct: 1058 LFCPRDLEHYQVEMEFWLAVGH-LPTAQLDQWACTTIEPGRDRPPLQGRALHGMVKGFMD 1116 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 L+F H RYYL+DYKS WLG D +AYT +AM A + R+DLQ LY ALHR L R+ Sbjct: 1117 LLFEHRRRYYLIDYKSTWLGADDAAYTPEAMRAEILHARHDLQGILYLYALHRQLAARLV 1176 Query: 1128 DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 DY E H GG +++FLRG+ E P QGIY P A ++ +D +F Sbjct: 1177 DYAPERHLGGALFVFLRGL--EAPGQGIYRLEPTAEMMRALDGLFG 1220 >UniRef50_B5EPU6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU6_ACIF5 Length = 1198 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 405/1203 (33%), Positives = 583/1203 (48%), Gaps = 75/1203 (6%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAA-FPRPLTVEEL 59 M+ + LDPL LPL G RLIEASAGTGKT+TIAALYLR++LG G FPRPL E++ Sbjct: 1 MTTI---LDPLHLPLHGSRLIEASAGTGKTWTIAALYLRMILGHGSEGEHFPRPLLPEDI 57 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRET---TDNPLYERLLEEIDD---KAQAAQW 113 LV+TFT AAT EL+ RIR + +P E LL + D +A+AA Sbjct: 58 LVMTFTRAATQELKERIRDRLQTAARYFRGTEHPAQPDPFLEALLADHPDPEVRARAAHQ 117 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L LA MD++A+FTI +CQR L +AF +G F + L+ DE+ LR A DFWR+ Y Sbjct: 118 LTLAADAMDDSAIFTIDAWCQRTLREHAFATGSDFRETLLLDETDLRDDAVRDFWRQEIY 177 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 PL V + + GP + ++ + + P+ + L A R+ T+K Sbjct: 178 PLGEPALDEVLQLFSGPDKIRQETAALCKLDPPLPAPASRLADWLPDALAAPRRRLATLK 237 Query: 234 QQWRDAVGELDALI--------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL-PE 284 QW + + ++ + + ++ + + WA+ + Sbjct: 238 AQWAAEHDAFAEWLSGLVNGPKADNPLNGNTLSAAIVSRALAALRDWADRSDPLIPDELD 297 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL-------VITRALAEIRE 337 ++ S L + K HP E +D L E +I + T A A I Sbjct: 298 KCQRLSASKLPEYCKNKPPPVLHPAAETLDTLFRELETIAQQFTRLHGEIRTHAAAWINA 357 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 ++R K + G++ F D RL L + G LAA +R ++P A+IDEFQDT QY+I Sbjct: 358 RLSRLKAQSGQVSFADYQRRLARVLHDKTQGPALAARLRQKYPAALIDEFQDTSALQYQI 417 Query: 397 FRRIWHHQPETA---LLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTNWRSAPG 452 F I+H LLLIGDPKQ+IYAFRGADI +Y++AR HY L TN+RS+ Sbjct: 418 FDDIYHAADNNPDTLLLLIGDPKQSIYAFRGADIDSYLQARRLTEGRHYALGTNYRSSHA 477 Query: 453 MVNSVNKLFSQTD-----------DAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKM 501 +V+++N +++ + +P+ PV++ G + R G+ PA+ Sbjct: 478 LVSALNAIYTAAEHDDPQGAFAYAAPGADNPLPYQPVQAHGHQKVWR--IHGKAAPALTF 535 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 W GE GDY A A I L + G A G+ R + A DI++LVR R Sbjct: 536 W-GAGEKLNKGDYLERCAAQAAECIVGLLDNPEAGFA--QEGEITRRLEAKDIAILVRDR 592 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 EAA +R AL ++ SV+LS +DSV+ + EA+E+L L+AV PE LR ALA ++ Sbjct: 593 HEAASIRQALHHRQLRSVFLSEQDSVYASEEARELLLWLEAVAEPEDARRLRVALALPLL 652 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 G ++ + +E AW+ +E+F + WR++GV+ ML + IA LL GE Sbjct: 653 GQPLSALDAFHQNETAWEAQLEQFQDLSRQWRRQGVLAMLHHSIHQFGIAARLLTQPEGE 712 Query: 682 RRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 RRLT++LH+ ELLQ+A ++ ALVR L Q I + + +RLESD L+++VTI Sbjct: 713 RRLTNLLHLGELLQQASATIDGPEALVRHLHQAIAAGSDQSDAHILRLESDAGLLRVVTI 772 Query: 742 HKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRL 801 H +KGL+YPLV+LPFI + + HS E ++ AE RL EDLRL Sbjct: 773 HAAKGLQYPLVFLPFIATCKAARANPFTVIHSAEGQPAIHWESGDTTAAERARLQEDLRL 832 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALC 861 LYVALTR+ LG+A G SA+ LL A Sbjct: 833 LYVALTRAEHALWLGLAAP-----KTAGTPIFAGSAIAHLLGSERTARDLATLLEDCARL 887 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLM 921 +I +T V + A +W V S+S L + Sbjct: 888 SPEIVVETLPDSIPTTLFVRPRNNAHNPPPEYTASFEKHWGVASFSHLVRELPADPAAPP 947 Query: 922 PRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL------DFTQPVDPNWVRE 975 H++P+G + GTFLH + L Q + + Sbjct: 948 TPRRAQ----------AGAPWHRYPQGMNAGTFLHDQLQRLAQNGFAQIGQDQFVEQLHK 997 Query: 976 KLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 G W EW+ A++ +PL +L L + EM F+ P S+ L + Sbjct: 998 ACTQAGLG-DWVGETAEWLQAIVHSPLAPLTAALCDL--SDTLSEMAFWFP-SDALRSDD 1053 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 LD L +Q A P L + GM++GF+DLVF GRYY+LDYKSN LG + + Y Sbjct: 1054 LDRLCQQHIFPGADRPRLPQRVIHGMMRGFMDLVFEQGGRYYVLDYKSNVLGSEDADYHA 1113 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQG 1154 +A+ A HRY+LQ LY LALHR LR R+ Y E H GG ++ FLRG+ + P++G Sbjct: 1114 KALRDATLGHRYELQSSLYQLALHRLLRQRMGSRYRPETHLGGTLFFFLRGL--QGPERG 1171 Query: 1155 IYT 1157 + Sbjct: 1172 VLH 1174 >UniRef50_B1XZ25 Exodeoxyribonuclease V, beta subunit n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZ25_LEPCP Length = 1272 Score = 831 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 432/1275 (33%), Positives = 598/1275 (46%), Gaps = 123/1275 (9%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG----SAAFPRPLTVEELLVV 62 L+PL LPL G LIEASAGTGKT+TIAALYLRL+LG G + PRPL E+LV+ Sbjct: 3 PLNPLTLPLHGSHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVM 62 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEID---DKAQAAQWLLL 116 TFT AAT EL RIR + E E + L + ++ AA L L Sbjct: 63 TFTRAATRELSDRIRERLIEAARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLAL 122 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A MD+AAV TI +CQRML +AF+S LF+++L DE+ R QA D+WRR YPL Sbjct: 123 AAEGMDDAAVHTIDAWCQRMLREHAFDSAQLFDEELEADEAGRRRQAVQDYWRREVYPLR 182 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD--DETLASRHAQIVARIDTVKQ 234 + V W L + L + P + L AQ + +K Sbjct: 183 GAALETVLSLWPEVAELQSQVAGLLGKLDLLEGVPEGLGLRDWLGQIAAQRSQELAQLKA 242 Query: 235 QWRDAVGELDALIESSG------IDRRKFNRSNQAKWIDKISAWAEEE--TNSYQLPESL 286 W + + I + + +N + W D + AWA + + Sbjct: 243 GWVERADFMQGWINQHRTCKPPVLAGARLKSNNVSDWFDALRAWAADPALETLDMGKTAP 302 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQL---LAEPLSIRDLVITRALAEIRETVAREK 343 + + + + G P F A QL L + + + + A + +A K Sbjct: 303 TRLTPEGIAECFNDGCAVPVPADFAAFAQLMFALGQRAPLHEPLQRHAAFGVARRLAALK 362 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-- 401 R+ G G+ D++ RLD+AL +GE LA IRT++P+A+IDEFQDT P QYR+F R++ Sbjct: 363 RQAGRFGYADLVERLDAALHGPAGERLAQRIRTQYPLALIDEFQDTSPLQYRLFDRLYDV 422 Query: 402 -HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE-VHAHYTLDTNWRSAPGMVNSVNK 459 ++ +T LLLIGDPKQ+IY FRGADI++Y+KAR Y L TN+RS +V +VN Sbjct: 423 AANRADTGLLLIGDPKQSIYGFRGADIYSYLKAREATAERRYMLTTNFRSTAALVAAVNT 482 Query: 460 LFSQTDDA----------FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 LF Q + A R +PF PV + G+ + L V G PA+++ + G + Sbjct: 483 LFEQAEAARPEGAFALGKDESRALPFDPVAARGRGEVL--VAGGAALPALQLAWLPG-AG 539 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 + +A AAQ+ WL G R +R SD++VLVR + EAA +R Sbjct: 540 QAQVQRRELADHAAAQLVAWLADPTCG--WSEGDAPLRRLRPSDVAVLVRDQHEAAAIRR 597 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL + SVYLS++DSV+ + EA ++L L AV P R+A A + L ++ Sbjct: 598 ALQRRGVHSVYLSDKDSVYASAEAADLLRWLMAVAQPLDGLLARAAYANASWDLGLDELA 657 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA---TAGGERRLTD 686 +DE AWD + +W+++GV+ MLR + A ++ LA A GERRLT+ Sbjct: 658 AHVHDETAWDARLALLQQLHGVWQRQGVLTMLRQTLHALDLPARWLAEGNEAAGERRLTN 717 Query: 687 ILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ-----------------MRL 729 +LH+ ELLQ A LE E L+RWL+ + A +RL Sbjct: 718 VLHLGELLQAASAHLEGEAGLIRWLAAMVRGGGDGAQGGSGMGGSAAAAGAGGDAHIVRL 777 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR----VQEQAFYHDRHSFEAVLDLNAAPE 785 ESD LVQ+VT+HKSKGLEYP+V LPF + R + A LD PE Sbjct: 778 ESDAQLVQVVTVHKSKGLEYPVVMLPFANSARAWRKKRHGALEWVDDDGRRALDFAQQPE 837 Query: 786 SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG 845 V AE ERL EDLRL YVALTR+ LG+ R G SALG LL Sbjct: 838 HVAAAERERLREDLRLFYVALTRARHALWLGIGVPPTGRNGSAGP----LSALGYLLAGD 893 Query: 846 EPQDAAGLRTCIEALCDDDIAWQTAQ-----TGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 + L + ++ALCD T W+ + Q Sbjct: 894 QGLREDSLGSVLQALCDVSDPPATRSVCLDVPAQRVRWRDDRAQPPLHLPPVFQAEFERR 953 Query: 901 WRVTSYSGLQQ----RGHGIAQDLMPRLDVDAAGVASVVEE------------------- 937 W + S+SGL + RG G P D + EE Sbjct: 954 WAIGSFSGLVRDLGERGAGAGVPATPHGATDLLRTEQLQEELAQMAQLTQMAAQADGQPA 1013 Query: 938 ------------PTLTPHQFPRGASPGTFLHSLFEDL---DFTQPVD---PNWVREKLEL 979 T H FPRGA PG FLH + L F + + + + E Sbjct: 1014 APSGSRAAAIAGSVPTWHGFPRGALPGNFLHDQLQWLAEEGFERAGESGVAAALLRRCER 1073 Query: 980 GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 G + +W+ +L PL G SL+++ EMEF++P S L +++LD + Sbjct: 1074 AGHAQHAAGAV-DWLQQLLATPLPPLGASLAEV--DRLLPEMEFWMP-SVALRSAELDRI 1129 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 +Q P L Q+ G+L GF DLVF H GR+++LDYKSN LG + YT A++ Sbjct: 1130 CQQHLLPGQPRPALVSRQLDGLLMGFADLVFEHGGRWWVLDYKSNALGATDADYTPAALS 1189 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTT 1158 AM AHRY+LQ +Y LALHR LR R+ DYD GG +YLFLRG + P G Sbjct: 1190 QAMLAHRYELQAAIYLLALHRLLRSRLGDDYDPARQLGGALYLFLRGF--KGPAAGCVHL 1247 Query: 1159 RPNAGLIALMDEMFA 1173 + +D + Sbjct: 1248 SAEPAWLDALDAALS 1262 >UniRef50_C1D6T6 RecB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T6_LARHH Length = 1216 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 453/1231 (36%), Positives = 619/1231 (50%), Gaps = 71/1231 (5%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAF----PRPLTV 56 MS++ + LDP R PL G RLIEASAGTGKTFTIAALYLRL+LG L Sbjct: 1 MSNLMQALDPRRFPLHGLRLIEASAGTGKTFTIAALYLRLVLGARSEDDGLAFNAGGLLP 60 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD--KAQAAQWL 114 ++LVVTFTEAAT ELR RIRS + E A + +D+ LL++ + + A L Sbjct: 61 PQILVVTFTEAATEELRERIRSRLVEAARAFRQNDSDDAFLRGLLDDYPAGQRGRHAHQL 120 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LA + MDEAA+FTIH +CQ+ML +AF+SG LFE + DES LR QA D+WRRH YP Sbjct: 121 ELAAQWMDEAAIFTIHAYCQKMLRTHAFDSGSLFELTVNTDESALREQAVNDYWRRHFYP 180 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 LPR + P L R L P + LA+R A+ A Sbjct: 181 LPRARLLPLQAIAASPAELGRLALPLLGRLPAGPADWTPVEAILAARRAEKAAWRQQ--G 238 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL-----EKF 289 + L L E+ ++ K + KW+D ++ W +++ L + Sbjct: 239 WLEELARTLTGLRENKTVNGNKVRADSCQKWLDDLADWLARDSDDLPLAGKPFETARWRL 298 Query: 290 SQRFLEDRTKAGGETPRHPLFEAIDQLLA---EPLSIRDLVITRALAEIRETVAREKRRR 346 + + D KAG F A+++LL S+R ++T A I +A EK RR Sbjct: 299 TPAGILDALKAGMSFDPPEPFFAVERLLQPALADTSLRAALLTHATRSIAAALAAEKSRR 358 Query: 347 GELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--- 401 E+GFDDM+ L AL +S E LA A+R +PVA+IDEFQDTDP QY IFR ++ Sbjct: 359 AEIGFDDMIRGLAQALAPDSPNRERLAQALRQAYPVALIDEFQDTDPAQYAIFRTLYADA 418 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNK 459 + LL+IGDPKQAIYAFRGADIFTY+ AR + YTLDTNWRS MV VN+ Sbjct: 419 GPEARLGLLMIGDPKQAIYAFRGADIFTYLAARHDTRPEQRYTLDTNWRSTTAMVGVVNQ 478 Query: 460 LFSQTDDA-------FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG 512 LF + +A F +IPF V++AG+++ R V G P + + + E+ Sbjct: 479 LFCGSPEAGTVSETVFGRPDIPFQAVRAAGRSE--RLVQGGMPVPPLTLAWRQ-EAGNKD 535 Query: 513 DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 DY+ A+ A I L + G LL + P+ DI+VLVR QEAA +R AL Sbjct: 536 DYRQEFARRAAEAITTLLNDSEAG--LLADDGGFEPLAPRDIAVLVRDWQEAAAIRRALD 593 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 L + SVYLS++DSVF + EAQ+++ L AV+ E LR ALAT+ +GL+ ++ L Sbjct: 594 LCSVRSVYLSDKDSVFASQEAQDLVRWLDAVLYAEDNARLRLALATATLGLDYAGLDRLF 653 Query: 633 NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT--AGGERRLTDILHI 690 NDE W+ E F YRQ WR++GV+PML AL+ + LLA GGER+LT++LH+ Sbjct: 654 NDEREWERTSERFRSYRQTWRQQGVLPMLLALLHDYRLPARLLARRDEGGERQLTNLLHL 713 Query: 691 SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 +E LQ ++ E ++R L + +PD+ S +RLES+ V++VT+HKSKGLEYP Sbjct: 714 AERLQADAAGIDGEVGVLRHLERLTEQPDAAQESV-LRLESEDARVRVVTLHKSKGLEYP 772 Query: 751 LVWLPFITNFR----VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVAL 806 LV+LPF+ R + F+HD V + + + E ED+RLLYVAL Sbjct: 773 LVFLPFLAGGRALPDGRNGIFWHDGDGRLHVDLTGQDADGLAAMQRESAQEDMRLLYVAL 832 Query: 807 TRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA 866 TR+ +G++PL + SA+GRLLQ R A DI Sbjct: 833 TRARHALWIGLSPL------SGTGDLLAGSAIGRLLQLDSDPGRLAGRLHALAQAGSDIR 886 Query: 867 WQTAQTGDNQPWQVNDVSTAEL-NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP--- 922 D P + L A+ L R WR+ SYS L Sbjct: 887 LDDTPPADPPPRYCDSTPAPVLFPARRLTRRIARRWRIASYSALLTGPAQAGPPAAEDSA 946 Query: 923 ---RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ--------PVDPN 971 R+D A + V+ T F RG G FLH LFE + Sbjct: 947 AANRIDDTAMPDSPVLPIAGRTLAGFWRGPQAGIFLHGLFEWAAQQGFGRTCELAAERRD 1006 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPL---NETGVSLSQLSARNKQVEMEFYLPIS 1028 + + + + W W+ VL PL + + V+L+ L R+ + E EF+L Sbjct: 1007 LLARRCQRREL-AGWIDFFDGWLPWVLTRPLPLNDASPVTLAALPPRSARAETEFWLGNP 1065 Query: 1029 EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088 + L + LD + P L ++G+ KGFIDLVF HEGR+Y+LDYKSNWLG+ Sbjct: 1066 Q-LATTALDAAVSVAVWPGHARPALLPQSLQGLFKGFIDLVFEHEGRFYVLDYKSNWLGD 1124 Query: 1089 DSSAYTQQAMAAAMQAHRYDLQ-YQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 +Y A+ M AHRY+LQ ADYD GG + FLRG D Sbjct: 1125 TPGSYHPDALRDEMLAHRYELQGMLYLLALHRLLRARLGADYDPATRLGGFVCWFLRGTD 1184 Query: 1148 KEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 P GI + L+ +D +FA T + Sbjct: 1185 G--PGAGIVHLPADLALLDRLDHLFACETPD 1213 >UniRef50_Q3B472 Exodeoxyribonuclease V, beta subunit n=2 Tax=Pelodictyon RepID=Q3B472_PELLD Length = 1203 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 392/1216 (32%), Positives = 582/1216 (47%), Gaps = 60/1216 (4%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + L+ +PL G LIEASAGTGKT I +LYLRL++ L + +LVVT Sbjct: 1 MMRALEHASVPLSGMNLIEASAGTGKTHAIGSLYLRLVVEES--------LLPDSILVVT 52 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERL--LEEIDDKAQAAQWLLLAERQM 121 +TEAA+ ELRGRIR I + A + +AA+ L A Sbjct: 53 YTEAASGELRGRIRDRIRDTLHALRDPQCSQQALLEIGSAAVAVGVEEAARRLEGALGSF 112 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 D AAV TIH FC R L +AFESG L++ L D+ L DFWR+ + ++ Sbjct: 113 DTAAVHTIHAFCLRALQDHAFESGSLYDTALGADQHELLQGIVEDFWRQRFFSPESPLSG 172 Query: 182 VV-FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + ++ P++ R ++ G I+ P E A+ A+ W+ Sbjct: 173 YIGWKKDVTPESFTRLLSSLRPGPFTCIR-PDYPPEEPAAAEARCTEAYRAAAGMWKQER 231 Query: 241 GELDALIES---SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 + +++ + + +++ A+ E + E+F+ L Sbjct: 232 ALIVSILNDDAGLSRAAGAYKKEELILLFERMDAYLESGSVFDCF-TGFERFTSASLRAN 290 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 K E P H F+A + LL E ++ + + R + R K FDD+L+ Sbjct: 291 MKKKYEAPVHRFFDAAEALLRELDLRLLVLKSELVRYYRSVLPRRKEELNVRLFDDLLTD 350 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ 417 L AL +E G L +R+ +P A+IDEFQDTDP QY IFR I+ L LIGDPKQ Sbjct: 351 LYLALEAEGGGRLGEVLRSSYPAALIDEFQDTDPVQYEIFRMIYAGSD-LPLFLIGDPKQ 409 Query: 418 AIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 AIY+FRGAD+F Y+KA + + +TL+ NWRSAP ++ N LF + + F++ I + Sbjct: 410 AIYSFRGADLFAYLKAAASVDGDCRFTLEKNWRSAPLLLEGFNTLFLKGPNPFLYPGIAY 469 Query: 476 IPVKSAGKNQALRFVFKGETQP-AMKMWLMEGESCGVG-----DYQSTMAQVCAAQIRDW 529 PV S G F + + P +++WL++ G + A A +I Sbjct: 470 RPVSSGGGGPRDPFTHEDDRHPEPLQLWLLDARDAKNGCLTVEAAEEMAAAAVAGEIVRL 529 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 L + G+A + + P+ ASD++V+VR+ +AA+V AL +P+V S+R SVF Sbjct: 530 LGDARAGKARIGDV----PLAASDMAVIVRTHLQAAKVHAALRARGVPAVMQSDR-SVFL 584 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYR 649 + A E+L LL+A++ P E +RSAL T+++G I L+ D W + +F + Sbjct: 585 SPVAGEVLLLLEALLHPSSEGRIRSALVTTILGRTGNVIAALSADGEEWIACLRDFAQWN 644 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALV 708 Q+WR +G M M RA M + +LA GG+R LTDILH ELL + T AL+ Sbjct: 645 QLWRTQGFMAMTRAFMRKEGVRRRVLAREGGQRTLTDILHCFELLHQHEHTSNAGPEALL 704 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV--QEQA 766 W S+ L+ + + QMRLE+D+ V+IVT+H SKGL+YPLV+ P++ +E A Sbjct: 705 AWFSERCLDTTGSEDAYQMRLETDEAAVKIVTVHVSKGLQYPLVFCPYLWKGSTSTKEVA 764 Query: 767 FYHDRHSFEAV-LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 +HD P+ + A E +AEDLRL YVALTR+ C A + Sbjct: 765 AFHDASGEAVRDFGSPGFPDGMLRAGEEAMAEDLRLFYVALTRAEHRCCFISARVSGGVS 824 Query: 826 D-------KKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD---DIAWQTAQTGDN 875 + + A RLL+ E + + AL ++ + ++ D Sbjct: 825 ALNYLLHAGESVQERVAGAPERLLEAMEASSPLRMEADLRALAEESRGAVGFRLLTQDDL 884 Query: 876 QPWQVNDVSTAELNA-----KTLQRLPGDNWRVTSYSGLQQRGHGIAQ-DLMPRLDVDAA 929 + A + +WRV+S++ ++GH + + Sbjct: 885 LRAALPAPKDDGSGAIGQNLRRFSGRIDSSWRVSSFTSFSRQGHRPQELPDRDETASGSL 944 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD---PNWVREKLELGGFESQW 986 +V E FPRGA G F+H +FE +DF+ P V L+ G+E +W Sbjct: 945 PQDTVSTEDAEGIFAFPRGAKAGLFMHEIFEHIDFSAPDPLAIRKLVDTSLQRYGYEPKW 1004 Query: 987 EPVLTEWITAVLQAPLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR--- 1041 +T + VLQ PL E L L + E+EF++P+S + + L R Sbjct: 1005 SDAVTGMVEGVLQMPLGEGEDPFRLGALQPGSWVSELEFFMPMSLLQTEALQNPLRRHGL 1064 Query: 1042 --QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + LEF GML GF+D+VF GR++LLD+KSN LG +S Y Q M Sbjct: 1065 MPEGADYRKLADSLEFQPATGMLLGFMDMVFEAGGRFWLLDWKSNHLGNRASDYAQDGME 1124 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTR 1159 AAM+ HRY LQY Y AL+R+L R+ Y Y HFGGV+Y+FLRGVD + G+Y R Sbjct: 1125 AAMEEHRYHLQYLFYLSALNRHLTLRVPGYTYRTHFGGVLYVFLRGVDGKGRGTGLYRVR 1184 Query: 1160 PNAGLIALMDEMFAGM 1175 P AGLI + AG Sbjct: 1185 PPAGLIEELTLAIAGE 1200 >UniRef50_A6DNF2 Exodeoxyribonuclease V, 135 kDa subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF2_9BACT Length = 1198 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 338/1232 (27%), Positives = 542/1232 (43%), Gaps = 92/1232 (7%) Query: 4 VAETLDPLRLPL--QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + + LD L P+ G LIEASAGTGKT++IA ++L +L + V E+LV Sbjct: 1 MMQPLD-LTQPIKDSGITLIEASAGTGKTYSIANIFLHFIL---------KGRDVSEILV 50 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRE-TTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VTFTE AT ELR R+R N+ + + + T ++P + ++E + + + L LA Sbjct: 51 VTFTEDATKELRDRVRKNLSKALLQIRGDVTEEDPTLKAIIEIYPHQDENRRRLELALVN 110 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 D+A + TIHGFCQRML NAFES F+ +L+ D+S L + DF R Y Sbjct: 111 FDQAVISTIHGFCQRMLKENAFESHSTFDMELVTDDSKLIDELVEDFIRIESYDHQSAFN 170 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + L+ + + +G ++ A+ I+ K D + Sbjct: 171 YDAEQ--------LKSLIKLYKG-------QAIEEAEEFDLEARKQKFIELYKAHGHDQI 215 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 L S + + S +I+ + + + + L +++ SQ + K+ Sbjct: 216 EVLQNNKGMSRTQKNPYLLSKFPDYIEHLKLYCKGDERPTAL-KAIVALSQSSINSNMKS 274 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 P H LFEA DQL + R L RE +K + + FDD++ +L Sbjct: 275 KKVPPTHELFEAADQLAECYSD--KFIKQRFLKSFREKYEAKKEKLNVMTFDDLIIKLHE 332 Query: 361 AL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA---LLLIGDPK 416 AL R ++ L + IR F VA++DEFQDTDP QY+IF+ ++ + +IGDPK Sbjct: 333 ALVRDQANGPLHSLIRDNFKVALVDEFQDTDPIQYQIFKSLFGDKSHATEHAFYMIGDPK 392 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ--------TDDAF 468 Q+IY FRGADIF Y++A+++ +TL N+RS MV++VN FSQ A Sbjct: 393 QSIYRFRGADIFAYLQAKNDADEQFTLQDNYRSEAAMVDAVNHFFSQRGADEAFAFAPAH 452 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 I F PV + L+ + E+ E + D Q+ M + +I Sbjct: 453 ESEGITFEPVGAKADKNTLKITGQPESLQLRWYRADEDKDLSKTDLQNLMPSLVTEEIIS 512 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 L Q+G A ++ + ++ DI +LV +A ++ +L IP+V + +VF Sbjct: 513 LLNKSQQGSAYF-ESEEKQALKPGDICILVNKNNQATAMKQSLNENGIPAVVAKSG-NVF 570 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGY 648 ++ EA + L AV+ P+ +L L + + L A +I+ L + E ++ EF Y Sbjct: 571 KSAEANALERFLNAVIDPKDS-SLIPLLLSELFTLTAEEIKELGDQERF--ELLTEFVDY 627 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ-LESEHAL 707 + W KRG + L+ + + L GER L+++ + E+L E L Sbjct: 628 HREWEKRGFLRTLQKFIDRHQLYTRTLEQDQGERSLSNLYQLREILHEEEQSKGLGPSGL 687 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF 767 +R+L + + D RLE+D + V+I+TIHKSKGLE+P+V+ P++ + +E ++ Sbjct: 688 LRFLQEK-TQADKVDDQYLQRLETDDNAVKIMTIHKSKGLEFPVVFCPYMWSESFEESSY 746 Query: 768 -------------YHDRHSFEAV---LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 YHD ++ D E L E L+E LRLLYVALTRS Sbjct: 747 GSFGESNKKNDFEYHDDSRLASLSIDPDEEFRQEKRYLWRREILSEKLRLLYVALTRSAH 806 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA---WQ 868 C L + + + + D++ R+ + + + Sbjct: 807 RCYLYWGDVNVSNTPFEYLANPEVTGADIADGTSTKLDSSQRRSIWQDQVANTSHTKFCE 866 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDA 928 P + EL + W SYSGL + + D Sbjct: 867 LGNIDQMSPCFYRPKNDLELRKPKELKFEFPIWVDGSYSGLIRSHDKVQFTPDQAPLDDE 926 Query: 929 ----AGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP-VDPNWVREKLELGGFE 983 E FPRGA PGT +H +FE +DF + ++L+ Sbjct: 927 GEKIPNAEPEEEIIPEGFFAFPRGAVPGTCIHEIFEHIDFQDERGWEEIIADRLKHYQLH 986 Query: 984 S-----------QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 + + + VL L +L + + E+EF+ P+ + + Sbjct: 987 ETELANQEEFFAKRIADCKDMLRKVLSTTLVHNDFALDSIPRHQRLDELEFHYPVKDIQL 1046 Query: 1033 ASQLDTLIRQF-----DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 + + S L + G G IDL F+ +G++Y++D+KSN+LG Sbjct: 1047 KKLQKLFLAHYSDGFPHDYSLDLEKLNYRMEEGYFNGSIDLSFQKDGKFYIVDWKSNYLG 1106 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 Y +A+ A++ H Y LQY +YTLA H YL +A YDY+ HFG IYLF+RGV+ Sbjct: 1107 PRYEDYHGEALQRAVREHFYFLQYHIYTLAFHLYLEKYLAGYDYDQHFGACIYLFVRGVE 1166 Query: 1148 KEHPQQGIYTTRPNAGLIALMDEM-FAGMTLE 1178 Q G++ R L+ M ++ G + Sbjct: 1167 P-GAQSGMHYDRVPKALVEDMKKLILEGEFKD 1197 >UniRef50_D0KVH3 Exodeoxyribonuclease V, beta subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVH3_HALNC Length = 1259 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 401/1253 (32%), Positives = 592/1253 (47%), Gaps = 99/1253 (7%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S++ L+PL P G RLIEASAGTGKTFTIA LY+RL+LG G PL ++LV Sbjct: 6 SNMPLPLNPLTFPFAGSRLIEASAGTGKTFTIALLYVRLVLGHGTE-----PLMPPQILV 60 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTD------NPLYERLLEEID---DKAQAAQ 112 TFT+AA ELR RIR+ + E ++ +P L ++ AA+ Sbjct: 61 TTFTDAAADELRDRIRARLFEAYRIFSEAGSELDPIAVDPYLLDLRAAFPTSEERLAAAR 120 Query: 113 WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHC 172 L +A MDEAA+FTIHG+CQRMLN +AF S LFEQ + + + QA D+WR + Sbjct: 121 RLEMAANWMDEAAIFTIHGWCQRMLNEHAFHSRALFEQTVRTSLTPVVDQAVQDYWRHYI 180 Query: 173 YPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 Y LP A V GP AL + +N L + + + A +VA I + Sbjct: 181 YALPPAQALSVANLLGGPSALTQKLNGLLSRDGAPLFVDGKPVDPAALDFFAMVADIAEL 240 Query: 233 KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 Q + A + + + + T+ L +SL+ ++Q Sbjct: 241 DTQAQQAEQDARQAWSKHAETLKDAWLPIMSALSGTSHRTLSKLTDFSTLWDSLDLWAQT 300 Query: 293 -----------FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD-------LVITRALAE 334 + + E P HP + R ++ A Sbjct: 301 GEPLPIDVFKFLTQPKFNKKLERPFHPALAVFSAWPVAMEAARHGREQSAIRLLAHAAFW 360 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 +R+ + ++ E+GFDD+L LD AL G+ LA IRT+FPVAMIDEFQDTDP QY Sbjct: 361 VRDRIDTVLQQNAEMGFDDILLNLDRALTGAEGQQLADTIRTQFPVAMIDEFQDTDPLQY 420 Query: 395 RIFRRIWH-------HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-AHYTLDTN 446 RIF R++ ++LIGDPKQ+IY FRGAD+F+Y+ AR HYTLD N Sbjct: 421 RIFDRVFRIGGNGEAAGQAGTMILIGDPKQSIYRFRGADMFSYLAAREATQGRHYTLDAN 480 Query: 447 WRSAPGMVNSVNKLFSQTDDA---------FMFREIPFIPVKSAGKNQALRFVFKG---E 494 +RS P +V +VN +F + D +PFI V + GK + L+ + + Sbjct: 481 YRSTPELVAAVNYVFERADRQPSGAFGHKTDEGNPLPFIRVSARGKARRLQRRNEAGEWQ 540 Query: 495 TQPAMKMWLMEGESC-GVGDYQSTMAQVCAAQIRDWLQAGQRGE-ALLMNGDDARPVRAS 552 P + W + +S G + MA+ A I L A Q G+ A +R Sbjct: 541 PCPPLTGWALPRDSLLAAGHFVEQMAEHTAEAITSSLNAAQVGDCAFFDAEGAMTALRPQ 600 Query: 553 DISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 DI++LV + +AA ++ +L I SVYLS+R +F T EA + L A+ P+R++ L Sbjct: 601 DIAILVSTGDQAAVLQQSLIRRGIKSVYLSDRHRLFATEEAADFHRWLLAIAEPQRQDRL 660 Query: 613 RSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE 672 R+AL +S + +++ + ND D F Y++I R +G++ + LM +I Sbjct: 661 RAALGSSSFARHWGELDAVRNDARL-DEDTSRFMAYQRITRHQGILAAVYQLMHDYHIPA 719 Query: 673 NLLATA----GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMR 728 LLA GERRLT++LH+++ Q QL AL L ++ N + ++R Sbjct: 720 RLLAAPLPDRSGERRLTNLLHLADWAQNEQAQLAGLDAL---LQRYAQAVSDNEAEHELR 776 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFIT----NFRVQEQAFYHDRHSFEAVLDLNAAP 784 LE D+HLV+I+TIH +KGL+YP+V+LPF+ + R S + L P Sbjct: 777 LEQDEHLVRIITIHSAKGLQYPVVYLPFLPLIRPKEANKNSTATPWRTSTGRGMSLGEFP 836 Query: 785 ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ- 843 E++ ++ E +RL+YVALTR+ C+L + P+ G + H+S LG +L+ Sbjct: 837 EAIAAEHEAQMTESVRLIYVALTRAESACTLALGPVKFGAGKQPNQ---HESGLGHVLRL 893 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 +G + A + L V V + A+T +R +WR+ Sbjct: 894 QGNDEFIASFEAALTDLDAQAGVTIEPPPSITHARFVAPVEDSLPPARTAKRRVDSHWRI 953 Query: 904 TSYSGLQQRGHGIA----QDLMPRLDVDAAGVASVVEEPTLTPHQ--------------F 945 +S+SGL H + D VEE P Sbjct: 954 SSFSGLTHALHESDVAVPETAKQEQLRDVLSQTGTVEESLDLPQTHRFDPQSLSARISHL 1013 Query: 946 PRGASPGTFLHSLFEDLD---FTQPVDPNWVREKLELGG--FESQWEPVLTEWITAVLQA 1000 PRG + GT LHSL E F Q + + + + L E + +L Sbjct: 1014 PRGTTFGTLLHSLLERAGEAGFNQSANFEFSLNLVRQLASTLTEDQQSTLAELVLRILTL 1073 Query: 1001 PL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVR 1059 L L+ + Q+E EF+LP+++ S +D L+ P L + Sbjct: 1074 SLVTTPSRRLADV--SRYQIEQEFWLPVAQT-QTSSIDALLCAHVHPGQMRPLLTAQYLE 1130 Query: 1060 GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 G +KGF+DLVF +GR+Y+LDYKSNWLG+ Y + + AM A RYDLQ LY ALH Sbjct: 1131 GQIKGFMDLVFEADGRFYILDYKSNWLGDSPEDYAPEHLVDAMLAARYDLQMVLYLTALH 1190 Query: 1120 RYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 R+L+ R+ +YD H GG +YLF+RG+D P QG+Y + N +IA MD + Sbjct: 1191 RHLQDRLPNYDPAVHLGGALYLFVRGID--SPGQGVYFSPANPTVIAAMDALL 1241 >UniRef50_B3ECZ4 Exodeoxyribonuclease V, beta subunit n=5 Tax=Chlorobiaceae RepID=B3ECZ4_CHLL2 Length = 1226 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 393/1238 (31%), Positives = 597/1238 (48%), Gaps = 102/1238 (8%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 LD +PL G LIEASAGTGKT+ I + L + L E++LVVT+TEA Sbjct: 6 LDHSTVPLSGMNLIEASAGTGKTWAITS--------LYLRLLLEKELRPEQILVVTYTEA 57 Query: 68 ATAELRGRIRSNIHELRIACLRETTDNPLYERL---LEEIDDKAQAAQWLLLAERQMDEA 124 AT EL RIR I + A + TD+P L + ++ +AA L A + D A Sbjct: 58 ATRELHARIRRRIRQALDAMRGDPTDDPFLIDLCDRAAQAGEEERAALLLEAALAEFDTA 117 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIHGFC R L +AFESG L++ +++ D+S L + DFWR + + Sbjct: 118 AIFTIHGFCNRALQDHAFESGALYDTEIVTDQSALAREVIDDFWRERFFGSADRLLGYAL 177 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 P A + + + LQ P + +A + A D V++ W + + Sbjct: 178 LKGWSPDAFMAFL-KSLQLSGRDEVIPVYGEAEIARIGHEAEAAFDEVRRIWSEEKEPVS 236 Query: 245 ALIES---SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 AL+ + + + + + + + N + L + +K + + TK+ Sbjct: 237 ALLRTGKGLSRSEKAYRADRVEQLLSDMEVFVAA-GNPFGLFDGFDKLTASGIASGTKSS 295 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 G P HPLF+ ++L A + + +A R+ + K+ R FDD+L+ L A Sbjct: 296 GTAPSHPLFDTCERLQAAADERLQALKSEVVAFYRKRLPERKKERNIRFFDDLLADLYQA 355 Query: 362 LRSE------SGEVLAAAI--------------RTRFPVAMIDEFQDTDPQQYRIFRRIW 401 L+ G + A+AI R R+ A+IDEFQDTDP QY IFRRI+ Sbjct: 356 LQGGCEIAATPGGLEASAIIEIGLEAAALAEALRNRYRAALIDEFQDTDPVQYDIFRRIY 415 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNK 459 E L LIGDPKQAIY+FRGADIF Y++A S+V +TL+TNWRS P +++ N Sbjct: 416 AGS-EAPLFLIGDPKQAIYSFRGADIFAYLQAASDVGRERSFTLNTNWRSVPKLLDGFNL 474 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 LF F+F IP P+ + + + + S G+ + A Sbjct: 475 LFDSARHPFVFDNIPSPPLVAGKELPRDAESPVPPLEICLLRSGDGDGSLKSGESERFAA 534 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 CA+ + + + G A DI+V+VR+ ++A ++ AL I SV Sbjct: 535 GACASMVTETINGGSD---------------AGDIAVIVRTHRQARMMQTALRECGIVSV 579 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 S+ +SVF ++EA+E+ L+ A+ P RE+ +R+AL T + GLN DI LN+DE+AW Sbjct: 580 MRSD-ESVFASVEAEEVRILVTALAEPGRESLVRAALVTPLFGLNGSDIARLNDDENAWV 638 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG--GERRLTDILHISELL-QE 696 +++F Y ++W++ G M M+R LM + E LLA +G GER LT++LH ELL +E Sbjct: 639 ERLQQFREYHRLWQECGFMVMVRELMRREAVRERLLALSGSSGERALTNVLHCFELLHRE 698 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 A ++ LV W + + + Q+RLESD+ V+IVT H SKGL+YP+V+ PF Sbjct: 699 AHSRGLGMEGLVTWFGERVAAKEP-GEEYQIRLESDEPAVRIVTAHVSKGLQYPIVFCPF 757 Query: 757 I--TNFRVQEQAFYHDRHSF-EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 + +HD + A LA E LAE+LRL YVALTR+ C Sbjct: 758 QFGGGNGSGDVVLFHDDDGRMKRDFGSRAIERHRALASREFLAENLRLFYVALTRAERRC 817 Query: 814 SLGVAPLVRRRGDKKGDTDVHQS--------------ALGRLLQKGEPQDAAGLRTCIEA 859 A +V R + S +G Q+ DA + ++ Sbjct: 818 IFFTARIVDARQSGRTPMLSPSSYLLYVSDEASQSPRLIGEAQQELAALDAGTMAERLQN 877 Query: 860 LCDD---DIAWQTAQTGDNQPWQVNDVSTAE---LNAKTLQRLPGDNWRVTSYSGLQQRG 913 + D+ I + D+ + + A+ + +WR+ S++ L + Sbjct: 878 ISDESGGAIRLRRLSLDDDLTVPLIRTAAADSPSFALREFTASLETDWRIASFTTLSRHH 937 Query: 914 H---GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD- 969 H + + AA +V+ + + FP+GA G +HS+FE LDF +D Sbjct: 938 HMAFELPDRDESTPEQQAAAAPAVLPDTDRSIFAFPKGAGAGILMHSIFETLDFANAIDD 997 Query: 970 ------PNWVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEM 1021 L+ G+E W+P LT + VL+ L+ E +L L + E+ Sbjct: 998 TSESHIEEASIRALDRYGYERHWQPCLTGMVQQVLRTELSSQEGNFTLGGLRQGSWSTEL 1057 Query: 1022 EFYLPISEPLIASQLDTLIRQFD------PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 EF+ P+ + + +L L+ + +A L+F V+GML GF+D+VF +GR Sbjct: 1058 EFFFPLRH-VTSPRLSELLMRHGVIPNGADPAAALQALDFTPVKGMLMGFMDMVFEAKGR 1116 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 YYLLD+KSN LG AY ++ + AMQ + Y LQY LYT+AL R+L R+ Y Y+ HF Sbjct: 1117 YYLLDWKSNHLGNAVEAYHRERLGKAMQENLYRLQYLLYTVALDRFLSLRVPGYRYDTHF 1176 Query: 1136 GGVIYLFLRGVDKE-HPQQGIYTTRPNAGLIALMDEMF 1172 GG IY+FLRGV E + G Y P+ LI + E+ Sbjct: 1177 GGAIYVFLRGVSVERGEEYGFYRDLPSEALIRELQELL 1214 >UniRef50_Q89AB3 Exodeoxyribonuclease V beta chain n=2 Tax=Bacteria RepID=EX5B_BUCBP Length = 1180 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 361/1186 (30%), Positives = 658/1186 (55%), Gaps = 21/1186 (1%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 ++ + ++++ +PL G+ LIEASAGTGKTF++ LY+RLLLG+ + + L ++E+L Sbjct: 2 ITTIPKSINVTTIPLSGKILIEASAGTGKTFSLTILYIRLLLGITNHVKYKKGLLIKEIL 61 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTE AEL RI++ I + AC+++ ++N + +LL +I D + L AE Sbjct: 62 VVTFTEHTRAELEIRIKTYIKIFKTACIKKYSNNYVLSKLLSKITDFPKTIDILSKAENS 121 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 + E +++TIHGFC ++L LN F S ++ + ++++ L + FW+ + L +I Sbjct: 122 IHELSIYTIHGFCYKILKLNKFNSELMLQNKILKHTYPLYLKISIKFWKYYFAFLSLDIT 181 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 ++ E + P+ LL++I L + K + + + ++ +I KQ+W + Sbjct: 182 SILLEYFNNPKTLLKEILPLLNKTQLISKLTKTKRKNIVQEYYILIKKIKLFKQKWANYS 241 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWA-EEETNSYQLPESLEKFSQRFLEDRTK 299 + + I + +++R + +SN +WI+ I+AWA +++T ++ +P L+ F F+ +T Sbjct: 242 HLIHSEIIKTNVNKRIYTKSNLKRWINNITAWATQKQTKNFFIPSELKYFRYSFIIKKTT 301 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLD 359 + + F+ ID L S++++ I A EI+ +EK + +DD+++ Sbjct: 302 SE-KILDDKFFKFIDTFLDSKFSLKEIFIIDASLEIKAMFMQEKIKNRYFEYDDLITFCW 360 Query: 360 SALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI 419 + + +++ ++ I ++PVA+IDEFQDT+ +QY IF++I+ + E L+LI DPKQAI Sbjct: 361 NMV-NKNNFNISQTILKKYPVALIDEFQDTNNKQYNIFKKIY--KKENLLILISDPKQAI 417 Query: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK 479 Y+F GADI +Y++A+S + Y LDTNWRS+P ++NS+N LFS+ + F+ + I F PVK Sbjct: 418 YSFSGADITSYLQAKSNIKNQYFLDTNWRSSPKIINSINLLFSRLKNPFLTKNITFYPVK 477 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 S+ N+ +F G+ QPA++ L + ++ + +Y+ ++ A I W+ +G +G A Sbjct: 478 SSRINKTTKFEVNGKNQPALRFLLNKNKNISINEYKEWISITTAKYISYWISSGIKGNAT 537 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 + + R V SDI+++VR+ EA ++ LT L I S+YL++++++F++ E E+LW+ Sbjct: 538 ITISNKVRTVNFSDIAIIVRNNLEAKTIQLELTKLNIQSLYLTSKNNIFQSKEILEILWI 597 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659 LQA++ P E L+ A++T++M N +I ++ N+ W + +EF+ Y W G++ Sbjct: 598 LQAILNPNIERLLKRAMSTNIMSKNTKEIISIPNNHSYWIKLSQEFNQYLIFWNNYGILY 657 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP- 718 +++ L+ NI+ N + +IL+I ELL+E ++++ L+ WL ++I + Sbjct: 658 VIQQLIINYNISNNNNLLHNFSPNIKNILYIGELLEEKSITIKNKFLLINWLKKNITQDF 717 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVL 778 + ++IV+IHKSKGLEYP+ +PF T + + + Sbjct: 718 YLTKPKYIKPNYEKNNYIKIVSIHKSKGLEYPITIIPFATITFNKTVSTV--EKICFNLN 775 Query: 779 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA---PLVRRRGDKKGDTDVHQ 835 + + E + +ED+RLLYVALTRS+ HCS+G++ + +++ +K + Sbjct: 776 NTKIKKQKTLKIEKHKFSEDIRLLYVALTRSIIHCSIGISLAQTITQKKKIQKEKSKFKI 835 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVST-----AELNA 890 + L ++Q G+ + ++ + + N + + T L Sbjct: 836 NVLRYIIQSGKNHISTKKLYTELSILKKNKNIEIISEIPNIIKKNFQIPTLNTNSQSLMH 895 Query: 891 KTLQRLPGDNWRVTSYSGLQQRGHGIA--QDLMPRLDVD-AAGVASVVEEPTLTPHQFPR 947 + R N+ TSYS L++ L + + E LTPH FP Sbjct: 896 YQVSRKFNYNYNFTSYSQLKKNIKPSTMYSTLNTKKLFELNVKKKHCFENKILTPHTFPS 955 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET-G 1006 G GT LH + +++ F + ++ NW+ +KL + +W +L W+ ++L L++ Sbjct: 956 GKIYGTLLHKILKNISFHKSINSNWLLKKLSEYNLDKRWCLILKNWMYSILYKNLDKNYN 1015 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFI 1066 + LS+L ++N E++F LPI + L A +L+ + + S+ L F ++G+L G I Sbjct: 1016 LRLSKLDSKNYIKELKFLLPIKKKLTALKLNNIFQTHQ-CSSLENKLCFHPIQGILSGSI 1074 Query: 1067 DLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 DLVF + +Y+L+DYKSNW+G + +Y+QQ + ++ H Y+ Q QLY+L LHRYL+ I Sbjct: 1075 DLVFLWKTKYFLVDYKSNWIGNSNQSYSQQNIKKIIKKHHYNFQLQLYSLVLHRYLKQHI 1134 Query: 1127 ADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 +Y + +HFGG LF+R +++ Q GI+ + PN +I ++++F Sbjct: 1135 KNYSFYNHFGGTYILFIRSINEIPSQNGIFYSIPNIEIIKKLEQIF 1180 >UniRef50_Q1NY14 Exodeoxyribonuclease V, beta subunit n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NY14_9DELT Length = 1239 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 376/1258 (29%), Positives = 568/1258 (45%), Gaps = 113/1258 (8%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 DP LP +LIEASAGTGKT++I ALYLR +L R L VE++LV++F Sbjct: 3 PFPFDPATLPAAPVQLIEASAGTGKTWSITALYLRFIL--------ERQLPVEKILVLSF 54 Query: 65 TEAATAELRGRIRSNIHELRIACL-----RETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 TEAATAEL R+R+ + A + +P L + AQ L A Sbjct: 55 TEAATAELHERLRARLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALA 114 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179 +D+AAV TIHGFC RML AFESGM FE +L+ + Q D+ + + Sbjct: 115 SIDQAAVLTIHGFCHRMLQQGAFESGMPFELELLAELDHYFQQLIHDYLNTVFHRDDPRL 174 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 ++ + + + LA +A ++ W+ Sbjct: 175 LSLLRQQGWQQWQQWARLAA--SHRHLPVVDDDEQGAVLAQLWEATLAAYGKARENWQQE 232 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED--- 296 + L+ + ++ + A E S +P E L D Sbjct: 233 WEAIGELLRQTEFQQKTRQQMAAGLLNRLADHLAGPEPASLVVPTGSEDLIPEKLADPKA 292 Query: 297 -----RTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA----EIRETVAREKRRRG 347 + G PRHP FE L S+ + LA +R + + G Sbjct: 293 KICMAKNIKAGNWPRHPFFEYWRDYLVALQSLTAHYRRQLLAGLGATVRRELPKRLYAAG 352 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE- 406 FDD+L RL AL + LA I R+PVA+IDEFQDTDP QY IF+ ++ Sbjct: 353 RQSFDDLLHRLAEALGDPGRKALAGLIAARYPVALIDEFQDTDPIQYAIFQAVYQQASRA 412 Query: 407 ---TALLLIGDPKQAIYAFRGADIFTYM-KARSEVHAHYTLDTNWRSAPGMVNSVNKLFS 462 T L+LIGDPKQAIYAFRGADIF Y+ AR YT++TNWR+ +V +VN +F+ Sbjct: 413 EAATRLILIGDPKQAIYAFRGADIFAYLGAARDAGEQCYTMNTNWRADRSLVAAVNAIFA 472 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-------------EGESC 509 + F+ EI F PVK + + ++ + + Sbjct: 473 AQPNPFVVPEIAFYPVKPQPEAGDGWHGGEVGGTAPLQFLTLAPAKVEELLTGARSKKQL 532 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 ++ + + AA + L+ G + D RP++ +DI++LVR ++A +++ Sbjct: 533 ARSTLENQIPALVAADLVKLLRGG--ATLTTGDAADRRPLQPADIAILVRENRQADEIQA 590 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL L + SV + +R SV + +A+++ LL ++ E R+A+ + ++ ++ Sbjct: 591 ALRLKGVKSV-VHSRASVLNSRQAEQLAILLYGLLEQAGEGQRRAAMVSELLACTPAELV 649 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 TL DE W + +F +R+IWR+RG++ +R + + LL A GERRLT+ H Sbjct: 650 TLAEDEKRWQQWLNDFSRWREIWRERGLISTMRIIDQEKGFTRRLLPMADGERRLTNYRH 709 Query: 690 ISELLQ-EAGTQLESEHALVRWLSQHIL-EPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 + ELL + AL++W + D+ A +Q++RLESD+ V+I+TIH++KGL Sbjct: 710 LFELLHHREKEEHLQATALLKWFDEARAGRADATAEAQELRLESDQEAVRILTIHRAKGL 769 Query: 748 EYPLVWLPFITN------FRVQEQAFYHDRH-SFEAVLDLNAAPESVDLAEAERLAEDLR 800 E+P+V+ P++ + +E YHD ++ + L E L E+ AE+LR Sbjct: 770 EFPVVYCPYLWKTWQKERRKPEEVLIYHDPKADYQGKIALLPTAEERRLRAQEQFAEELR 829 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEAL 860 LLYVALTR+ C + + + +AL LL G+ + L Sbjct: 830 LLYVALTRAKHCCLVVW----------EAASGYQDTALAHLLHGGQQPITNDRAELLADL 879 Query: 861 CD-----DDIAWQTAQTGDNQPWQVNDVSTAELNA----KTLQRLPGDNWRVTSYSGLQQ 911 W+ D S E +A +TL+ WRV S+S L Sbjct: 880 TGACKRQPHWQWRPLPADPATVAPWRDPSRPEGSAGGYCRTLRHGIAPAWRVGSFSQLIA 939 Query: 912 RGHGIAQDLMPRLDVDAAGVASVVE---------------------EPTLTPHQFPRGAS 950 A D D DA G + + FP G + Sbjct: 940 ARGEQAPDFSQSRDYDAPGQPASAPLADTPAAQGGEDHGEAVKQRLPARVPLADFPAGLN 999 Query: 951 PGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFESQWEPV-----LTEWITAVLQAPL-N 1003 G LH +FE + F + + + E+ G EP L++ + AVLQ PL + Sbjct: 1000 AGNLLHRIFELISFHEASEHRRIIAEQAATFGLTGAMEPEKVVAELSQAVAAVLQTPLLS 1059 Query: 1004 ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP--------LEF 1055 + SL+ + +++ EM F P+ + L F + G PP L F Sbjct: 1060 DESFSLADIDDQHRLNEMSFTFPLCQRGSPLTAAALAAAFAEEAVGLPPAYPAHLAELPF 1119 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 ++G +KGFIDLVF+H G++Y++DYKSN LG+ + Y + M H Y LQY LYT Sbjct: 1120 TALQGFMKGFIDLVFQHRGKWYIVDYKSNLLGDSHADYQPGRLWPPMVEHHYILQYHLYT 1179 Query: 1116 LALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPNAGLIALMDEMF 1172 +ALHR+L R+ YDY HHFGGV+YLF+RG+ E GI+ RP AGLI + Sbjct: 1180 VALHRHLSARLPAYDYRHHFGGVLYLFIRGMHPELGTAAGIFQQRPAAGLIDHLSRRL 1237 >UniRef50_A4B915 Exodeoxyribonuclease V, beta subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B915_9GAMM Length = 1130 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 352/1187 (29%), Positives = 560/1187 (47%), Gaps = 83/1187 (6%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MSD+ L+ LPL LIEASAGTGKT+ I +YLRLLL + LTV+++L Sbjct: 4 MSDMP-ILNAGELPLADTHLIEASAGTGKTYNIVRIYLRLLL--------EKELTVDQIL 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK---AQAAQWLLLA 117 V+TFT+AATAE+R R+ + + E + + E I + +A + A Sbjct: 55 VMTFTKAATAEIRNRLSAFLREALQIWETQNYRDDKERAFYETIRRRVDPEKARLQMRQA 114 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 Q+DEAA++TIHGFC+R L+ AF SG+ F + D L QA D++RR Sbjct: 115 LLQLDEAAIYTIHGFCKRALSQQAFFSGLSFHANMEADSQELMLQATQDWYRRI---QQA 171 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 + + E W P+A + +R + + P+ + ++L + H W Sbjct: 172 DWYADIDERWPTPEAFMAHWSRVIGSDIPLNAPTVENLDSLLAEH----------IDSWS 221 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 D L R+ + + I+ + AE + P+ KF + Sbjct: 222 DERETFLKL----NKPRKAEVIALRDSLIEALDRAAEGQPLQALDPDVESKFFNTKAKQA 277 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 + H L E +L + + IRE + K R+ +L F+D++ + Sbjct: 278 GLSVCRRLVHL------TLTNEKARKLNLAL-DGVRFIREQLNASKARQDQLDFNDLIIQ 330 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-HHQPETALLLIGDPK 416 L AL L A+ +FP A++DEFQDTDP QY+I RI+ L +IGDPK Sbjct: 331 LRRALDGPHAVELQKALLDQFPAALVDEFQDTDPDQYQILNRIYHRQHGPHFLCMIGDPK 390 Query: 417 QAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF- 475 QAIYAFRG D+F Y+ AR + +T+DTN+RS+P +++ N+ F Q+D F Sbjct: 391 QAIYAFRGGDVFAYLSAREQATQQWTMDTNYRSSPSVIDGYNRTFLQSDAPVNPEAFGFG 450 Query: 476 -IPVKSAGKNQALRFVFKGETQPAMKMWLMEGES---CGVGDYQSTMAQVCAAQIRDWLQ 531 + + +F + + L + ++Q ++A C +I L Sbjct: 451 IEYHRILAADDRKDPIFSDDRSGVQWVHLSPADESVNTVKKEFQQSIADWCVQEIAHLLN 510 Query: 532 AGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETL 591 D R + A DI++LVRS EA ++D L +PSVYLS R +VF+T Sbjct: 511 DV---------TKDERSITAGDIALLVRSYGEAQLLQDTLRRANLPSVYLSARQNVFQTS 561 Query: 592 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQI 651 EA+++ LL + + + +ALA S +GLN ++++ L +DE W F +R+ Sbjct: 562 EARDLYQLLNGIWQADNDRLFLAALAGSWIGLNLIELDQLQHDERLWAQWQTRFVQWRED 621 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWL 711 W +RG+M +L ++ + + + ER LT+ LH++E LQ Q AL+ W Sbjct: 622 WTQRGLMSVLLEILQSHHRPQR----DATERSLTNRLHLAERLQLESNQHRLPDALLHWF 677 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF---- 767 ++ L+ D+ Q+RLESD L++I+T+H +KGLEYP+V++PF + + Q+ Sbjct: 678 AR-ALDEDTGEEDNQLRLESDDALIKIITMHGAKGLEYPIVFIPFASYYSASRQSPAFYH 736 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 +HDR +F + + E L + E AE +RLLYVA+TR + +AP Sbjct: 737 FHDRETFASQWVYLSNDEQKQLTQEEDEAERIRLLYVAMTRPIDRLYCCLAPFTGFAQSP 796 Query: 828 KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 G T S L + +G + ++ + DI T T ++ + Sbjct: 797 LGLTLKQAS---FELSDISAKVCSGQAATLMSVNERDIQTVTMTTPESPDTSI------- 846 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR 947 A +W ++S+S L + + R ++D G E + + Sbjct: 847 --AAEFHGHIERDWWLSSFSALTRHVGHSSHSTPDRDELDGLGSTETSTE---LRFRLAK 901 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGF--ESQWEPVLTEWITAVLQAPLNET 1005 GA G LH E DFT P P + + + +S + +WI +L AP+ Sbjct: 902 GAEAGNLLHDTLEHCDFTNPDYPTLLEQARKRYSILAKSFTDDEFRQWIDELLHAPI--D 959 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 G L L + E EFY P+ + I +L +I Q + P + +++GM+ GF Sbjct: 960 GFRLCDLPKQKTLREAEFYFPMEDTPI-DKLSAIIAQRRGETFQLP--DRHRLKGMMHGF 1016 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 IDL+F +GRYY+ DYKS LG + Y ++ ++ + YD+QY +Y +ALHRYL R Sbjct: 1017 IDLIFEWQGRYYVADYKSTHLGHQLTHYQPPSIRHSILSSHYDVQYAIYAVALHRYLAGR 1076 Query: 1126 IADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 + Y+ + HFGGV Y +LRG+ + GIY + +D +F Sbjct: 1077 VPGYNPKQHFGGVYYFYLRGMHPDST-TGIYHDPIGIQDLQALDAVF 1122 >UniRef50_B4RTM1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Bacteria RepID=B4RTM1_ALTMD Length = 1336 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 363/1290 (28%), Positives = 590/1290 (45%), Gaps = 147/1290 (11%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ A+ LD + +PL+G LIEASAGTGKTF I LYLRLLL + LTV+E+LV Sbjct: 25 NNDAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLL--------EKKLTVKEILV 76 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDN--------PLYERLLEEIDDKAQAAQW 113 +TFT+AAT E++GRI + E + + ++ P+Y+ L + ++ Sbjct: 77 MTFTKAATEEIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVYQHLFTRCNT-DESMAL 135 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L A+ ++DEA+VFTIH FCQ ++ AF SG L D S L QA D+ R+ Sbjct: 136 LKAAQLELDEASVFTIHAFCQHVITQLAFNSGFAMSLNLGNDTSDLYLQAAEDYIRK-VS 194 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ-----IVAR 228 + + W P+ LL + N ++ + D E R VA Sbjct: 195 KNEDDFRLLAESGWHTPERLLLEFNASIKSTLTPLMLSEQDIELAYQRQLDESPHTSVAY 254 Query: 229 IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 + T+ Q D G L + K R + + + Y P E Sbjct: 255 VKTLSQSVEDNEGLLVEQL--IKTPAHKKERPQELAALKSWLRSCADSGQYYLPPPEAEA 312 Query: 289 FSQRFLEDRTKAGGET---PRHPLFEAIDQLLAEPLSIRDLV-----ITRALAEIRETVA 340 F + R +G + P A+ ++ E V + A+A I+ V Sbjct: 313 FVKGTRYARNSSGVKEILTPIKEFATALKKVFGEKDKALAKVPVFKLVIEAIAFIKGRVD 372 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 ++K++ G + FDD++ L + + ++ +R +FPVA+IDEFQDTD +QY I + Sbjct: 373 KQKKQLGVIDFDDLIRMLADEVVKPNNTLVPE-LRKKFPVALIDEFQDTDAKQYAILDAV 431 Query: 401 WHHQPETA----------------------LLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 + + + LL+IGDPKQAIY FRG DIFTY+KA + Sbjct: 432 YPNASSNSASQTETDLSNDNEESASARVSALLMIGDPKQAIYRFRGGDIFTYLKAGRQAD 491 Query: 439 AHYTLDTNWRSAPGMVNSVNKLF------SQTDDAFMFREIPFIPVKSAGKNQALRFVFK 492 + ++TNWRS GMV + N+LF S T +I + PV+ K A + + Sbjct: 492 YRWVMNTNWRSVEGMVKAYNRLFYGAPVASNTPTDVFGFDIKYNPVEFTPKAAAAKTPLR 551 Query: 493 GETQPAMKMWLME---GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 M + E + MAQ A +I L Q ++ + +PV Sbjct: 552 DPAAQRSAMNYVSLCLEEKENTNIMRRKMAQWIAQEIYRLLNEAQ----FQLDNGETKPV 607 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 + DI++LV+ R EA +++ L + VYLS+R ++F + EA+++L LL + Sbjct: 608 KPQDIAILVKDRTEAGAIKNVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNGIWHANDT 667 Query: 610 NTLRSALATSMMGLNALDIETL--NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 + + S+LA+ + G + + L + D+ WD +++ R +W ++G M +L LM Sbjct: 668 SNVSSSLASPLWGYSPQTLIELLYHEDDAMWDKAMDKVLSLRDMWLQKGCMSVLLHLMQD 727 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 + ER LT+ H++E+L++A T + L+ WL++ I +P+S+ + Sbjct: 728 S----YVPHADNVERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKPESD-EELTL 782 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--------FYHDRHSFEAVLD 779 RLESD L++++T H SKGLEYP+V++P+ T ++ + ++D + + Sbjct: 783 RLESDSQLIRLITQHGSKGLEYPIVFVPYATGYKDASKNGKSTSQIFTFYDEDKQDLQMQ 842 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 L +++ + E AED+RL YVA+TR+ C +GV PL SAL Sbjct: 843 LGQTAQAIARVQRESEAEDMRLAYVAVTRAAHRCYMGVIPLANNEK----------SALA 892 Query: 840 RLLQ-KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW----QVNDVSTAELNAKTLQ 894 R L G+ + + + ++D + + GD + +L A Sbjct: 893 RALGLSGDESTNRDWPSVLRRVAEEDESHASYIDGDEFEEIYSGFEQGDAIPQLTALQFT 952 Query: 895 RLPGDNWRVTSYSGLQQ-----------------------------------RGHGIAQD 919 + WR+ S+S + + ++ D Sbjct: 953 GTASEEWRLYSFSAMSRLTTVGSVKSTDTVEGAGQSLPSVPVLRTVRDEEVYALDTLSTD 1012 Query: 920 LMPRLDVDAAGVASVVEEPTLT----PHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE 975 +D + + +T +GAS G LH + E DF+ PV +E Sbjct: 1013 GEILGAIDVDSHTPLTQTSAVTKNDLRFTLEKGASAGNLLHDILEHSDFSAPVWEETGKE 1072 Query: 976 KLELGGFESQWEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 + G E + P L EW+ VLQ PL + +S L+ E EFY P+++ Sbjct: 1073 LVNRFGLEEKRTPFLYEWLEEVLQTPLYPNVQLCMSDLTLEQTLREAEFYFPMNDTQWKQ 1132 Query: 1035 QLDTL-------IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 + L + P L +++GM+ GFIDL+F H+G++++ DYKS WLG Sbjct: 1133 LREVLNTHRQSVAETLGGEAEPAPQLITAKLKGMMHGFIDLIFEHDGQFFVADYKSTWLG 1192 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVD 1147 + +Y A+ Q H YDLQY +Y LALHRYL + + DY+ + HFGGV YL+LRG+ Sbjct: 1193 DTLESYMPSALFHNNQHHLYDLQYLIYCLALHRYLSNTLPDYEPDIHFGGVYYLYLRGMH 1252 Query: 1148 KEHP-QQGIYTTRPNAGLIALMDEMFAGMT 1176 E+ +G++ T + L+ +D +FA + Sbjct: 1253 PENEQGEGVFYTHIPSSLLHQLDAIFASKS 1282 >UniRef50_A1KCB1 ATP-dependent exoDNAse beta subunit n=3 Tax=Betaproteobacteria RepID=A1KCB1_AZOSB Length = 1241 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 406/1247 (32%), Positives = 583/1247 (46%), Gaps = 88/1247 (7%) Query: 1 MSDV--AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEE 58 MS + LD PL G RL+EASAGTGKT+ I GL R L VE Sbjct: 1 MSAIANPLPLDVFTCPLDGVRLVEASAGTGKTWNIC--------GLYLRLLLERELAVES 52 Query: 59 LLVVTFTEAATAELRGRIRSNIHELRIACLRETT-DNPLYERLLEEID----DKAQAAQW 113 +LVVTFT+AATAEL RIR I + +P L+ + A+ Sbjct: 53 VLVVTFTKAATAELSSRIRERIVDCLRVLDGGDPGADPFVPGLIACAGAAGIEPPLMAER 112 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 L A + DEAA+FTIHGFCQR L F +G+ + +L ED+ LR + DFWRR Sbjct: 113 LRRALQTFDEAAIFTIHGFCQRALADTPFAAGLPYALELAEDDGALRREVAQDFWRREIA 172 Query: 174 PLPREIA--QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 + P+ + R L + + LA+ HA + A Sbjct: 173 AGALAPLLADHLLACGDSPEGWAEMLRRDLARPLAERRWDEAEAADLAALHAALEAAYAD 232 Query: 232 VKQQWRDAVGELDALIESS-GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP----ESL 286 +W D G +A+ + +++ + A+ + W LP L Sbjct: 233 AVARWGDGQGPCEAVSGALDALNKSSYKPDALARARRQWQDWLGAGDPRRALPGDKDSKL 292 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP-------LSIRDLVITRALAEIRETV 339 ++FL + K GG P F A D LL + R ++ R LAE E + Sbjct: 293 HLLCEQFLAGKVKKGGSAPTGLFFAAADALLGARGAVDAAVDAARLQLLRRFLAEGAEEL 352 Query: 340 AREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 R KR R ++ FDD+L +AL S + LA A+ R+P A+IDEFQDTDP Q+ IF R Sbjct: 353 RRRKRERRQIAFDDILWNAYAALTSGAQPWLAGALHQRYPAALIDEFQDTDPLQFAIFDR 412 Query: 400 IWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVN 458 +++ +L L+GDPKQAIY+FR AD+ TY+ AR A YTL TN RS+ ++++ N Sbjct: 413 VYNAEGRHGSLFLVGDPKQAIYSFRSADLHTYLAARDRADACYTLATNQRSSAALIDACN 472 Query: 459 KLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD----- 513 +LFS FM + + V + + + F + A+++W + + Sbjct: 473 RLFSANPAVFMLDGLDYRKVGAGTRPRPPLFDAADDNPAALRLWRIPKDEALEAAAEEEG 532 Query: 514 ----------YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 + Q A + A RP+ +DI+VLVRS + Sbjct: 533 GDGGGGGHRLPREQALQRAARASAAEIARLLAAGAAGEVRIGERPLAPADIAVLVRSHGQ 592 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A++R AL + SV LS SVF T +A+E+ +L A+ P RE + +ALAT+ MG Sbjct: 593 GARMRRALAAFGVGSVELSQA-SVFHTEDAEELERVLIAIAEPAREARVMAALATAAMGY 651 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 A I L DE A V++ F G+R+IW RG MLR MS +A LLA A GERR Sbjct: 652 GAAAIAALAADEAALLRVLDRFAGWREIWLARGFGVMLRRWMSDEGVAARLLARADGERR 711 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 LT+++H++ELLQ+A S L+R L+ + + Q+RLESD++LVQIVTIH+ Sbjct: 712 LTNLMHLAELLQQAAGT-ASPEVLLRTLATRRA--EEGGEAAQLRLESDRNLVQIVTIHR 768 Query: 744 SKGLEYPLVWLPFITNFRVQEQAF-----YHDRHS---FEAVLDLNAAPESVDLAEAERL 795 SKGLEY +V+ PF+ + +H + + A AER+ Sbjct: 769 SKGLEYGIVFCPFLFDGYPPPAERGPMRAWHADDGTLVLDYRSEAAADKTIAARIRAERM 828 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 AED+RL YVALTR+V C L V R K G ++ +S L + G D Sbjct: 829 AEDMRLAYVALTRAVHRCYLVVGCYARMAFGKPGYSESGRSLLNWM-AAGAGLDPEAWAE 887 Query: 856 CIEALCDDDIAWQTAQTGD-------NQPWQVNDVSTAELNAKTLQRLPGDN-----WRV 903 + D W+ T + P + + A+ + R+P WR+ Sbjct: 888 HKMTPAEIDARWRGLVTTSGGVISLADLPAGEGEALAQDDGAERVPRVPRPPQVSAGWRI 947 Query: 904 TSYSGLQQRG--HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED 961 S+S L A+D R +FPRG G LH++FE Sbjct: 948 GSFSALIFGATHEQAARDHDARQVPVEPESPPAPPPAADDILRFPRGPVAGDCLHAVFER 1007 Query: 962 LDFTQPVDPNW-----VREKLELGGFE-SQWEPVLTEWITAVLQAPL--NETGVSLSQLS 1013 +DFT P + + + + G + ++ +L + VL APL + L L+ Sbjct: 1008 IDFTDPGGWDAAIESALADHPQRGEADGARLHAMLRSMLRDVLDAPLTAGPAPLRLGTLT 1067 Query: 1014 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE 1073 + E+ F+LP + L + G P L F + G LKGFIDLVF H+ Sbjct: 1068 MARRLTELGFHLPAPRVEAEALNAWLAAR----GYGVPRLAFTGLEGYLKGFIDLVFEHD 1123 Query: 1074 GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 GRY++LD+KSN LG + Y + AAMQAH Y LQ+ LYT+ALHR+L + DYDY Sbjct: 1124 GRYWVLDWKSNHLGNAPADYAPARLEAAMQAHGYHLQHLLYTVALHRHLGRCVPDYDYAR 1183 Query: 1134 HFGGVIYLFLRGVDK----EHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 HFGGV+YLF+RGV + G++ RP ++ +D + AG T Sbjct: 1184 HFGGVLYLFVRGVRPGWQADGQPAGVFHHRPEVEVVQALDHLLAGGT 1230 >UniRef50_Q6ANK1 Related to exodeoxyribonuclease V, beta chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK1_DESPS Length = 1191 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 370/1225 (30%), Positives = 579/1225 (47%), Gaps = 82/1225 (6%) Query: 1 MSDVAETLDPLRLPL------QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPL 54 MS A T DP+ + +G IEASAGTGKT+ I L LR + + + Sbjct: 1 MSYKAGTPDPIIFDVAKTPMERGVNFIEASAGTGKTYAIGMLVLRAI--------CEQDI 52 Query: 55 TVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQ-- 112 ++ +L+VTFT AA ELR R+R+ + E R D L + D+ A + Sbjct: 53 GIDRILIVTFTRAAAEELRSRVRARLVEARDLLQGRHEDASLRAWQEHAVKDEGVARRFI 112 Query: 113 -WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 L LA +D A +FTIH FCQRML+ A ESG LF L+ LR +A DFWR H Sbjct: 113 SRLQLAIVNIDRAGIFTIHSFCQRMLSEQALESGQLFRMDLLTSLDDLRLRAAEDFWRIH 172 Query: 172 CYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 Y L +V W P LL + +L G+ + P+ E ++ + I Sbjct: 173 VYSLSPWSCSLVMGQWSSPADLLANAFVHLHGDTRI----EPEVEDISLLWQNLEGAIAR 228 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEE-ETNSYQLPESLEKFS 290 +K+ W + L + + KF ++ A + A + + + P +L + Sbjct: 229 MKEWWLGSGTALQEALAEA-CGEDKFKKAFVADFAGSFRACEKFFLGQAEKFPANLSWLT 287 Query: 291 QRFLE-----DRTKAGGETPRHPLFE-------AIDQLLAEPLSIRDLVITRALAEIRET 338 L+ ++ + + P A +LL + E+ Sbjct: 288 VAGLKVEINGNKFRGKKKDEIDPFLNSMGLPEMAATELLELKKQLFIGYRIFFAGELERG 347 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 V R+ + G + FD ++SRL + L E L A++ R+ +A+IDEFQDTD +Q+ IF Sbjct: 348 VGRQLQEHGSISFDQLISRLAAGLCGEE-THLQTALQARYDLALIDEFQDTDNEQWHIFS 406 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVN 458 +++ + +L LIGDPKQAIY FRGADI++Y AR++ Y+LDTN+RS +V VN Sbjct: 407 KLFASKKH-SLYLIGDPKQAIYKFRGADIYSYFTARTKTDYFYSLDTNYRSHRDLVRGVN 465 Query: 459 KLFSQTDDAFMFREIP--FIPVKSA-GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 LF+ +DD F+F+E + PVKS ++ L K P + + L E + G + Sbjct: 466 GLFAGSDDPFLFKEEGLLYYPVKSGKSRDVYLVDAEKKPLVPFVYLQLEENDDDKKGKWS 525 Query: 516 STMAQV-----CAAQIRDWLQAGQRGEALLMNGDD---ARPVRASDISVLVRSRQEAAQV 567 S +A+ A+ L + +N D +P+R DI+VLVRS +A Sbjct: 526 SALARTAIRGDIVAETLHLLSISEPTSIHKLNRDGQSIYQPLRPQDIAVLVRSNSQAEAY 585 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 + A + +P++ ++ R ++FET E+ E+L LLQA++ + L++A+ S+ D Sbjct: 586 QQAFLQVGVPAI-IAGRKTIFETDESHELLLLLQAIIDHDDLRLLKTAMTISLFACTGDD 644 Query: 628 IETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI 687 I + DE A F +W +RGV+ ML L+ ++ + NL+ + ERR+ + Sbjct: 645 IMAIWQDEQAVAEWYNVFLQCYHLWSERGVLTMLYFLVDSKELFANLVQFSQPERRIANF 704 Query: 688 LHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 H+ E+LQ+A T + WL + L + ++RLESD+ +QIVT+H SKG Sbjct: 705 THLFEVLQQAETAANLGPRQSLLWL-RSALTGKQKNDAFELRLESDEEALQIVTMHSSKG 763 Query: 747 LEYPLVWLPFI----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 L+YP+V+ P + + ++ E + A E LAEDLRL Sbjct: 764 LQYPVVFCPDLYGRSARIKNEKNVISCHDGGAVIDFGSEHFSERRERACREELAEDLRLA 823 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVALTR+ A + R G SALG LL G+ D + ++ L Sbjct: 824 YVALTRAELRSYTYWADISARG---AGVDASLNSALGHLLFAGDDIDYEEQQERLKVLAR 880 Query: 863 DDIAWQTAQTGDNQP---WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQD 919 + A + + + + RL +W++TSYS L G Sbjct: 881 ESGALFQHVSAEPATCSSYGAERRVKSLATRPHRPRLLATDWQMTSYSALASLGDHAP-- 938 Query: 920 LMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW------- 972 V ++ + P + + P+GA G +H L E F V Sbjct: 939 ------VVQFDRDALADAPRIAFAELPKGARFGNAVHDLLEKCAFADLVLHADDLHVQGM 992 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 + +K E G + + + T+ PL G SL+ LS EMEFYL ++ + Sbjct: 993 MEQKCEEYGLQLD-QELFTQLFVQACSTPLFAGGFSLADLSRSRCLKEMEFYLRLAH-IN 1050 Query: 1033 ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 ++++T++ + ++RG + GFIDLV +HEG+YY++DYKSN+LGE S Sbjct: 1051 LAEINTILADEP----TVQAISAKKMRGYMTGFIDLVCQHEGKYYVVDYKSNYLGELQSD 1106 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ 1152 Y+ ++ M AH Y LQY +Y+L LH++L+ + Y YE HFGGV+YLF+RG+D + Sbjct: 1107 YSGDSLVQVMAAHNYGLQYYIYSLVLHQHLQTFVEGYSYEEHFGGVMYLFVRGMDPDIAG 1166 Query: 1153 QGIYTTRPNAGLIALMDEMFAGMTL 1177 G++ TRP GLI +D + G Sbjct: 1167 SGVFATRPARGLIEALDRLIGGGEE 1191 >UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=Proteobacteria RepID=Q1BXL0_BURCA Length = 2007 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 411/1260 (32%), Positives = 584/1260 (46%), Gaps = 110/1260 (8%) Query: 1 MSDVAET----LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTV 56 MS V++ LD PL G IEASAGTGKT+ I ALY+RLLL + L Sbjct: 1 MSAVSQQQALELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLL--------EKDLGA 52 Query: 57 EELLVVTFTEAATAELRGRIRSNIHELRIACL-RETTDNPLYERLLEE------IDDKAQ 109 +E+LVVTFT+AATAEL RIRS + +L A + +P RLLE D Sbjct: 53 DEILVVTFTKAATAELHERIRSRLAQLAHALDTGDDGGDPFIARLLETTLGDDGALDSGT 112 Query: 110 AAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 AA+ + A R D+AA+ TIH FCQR L F + M F + D++ LR++ ADFWR Sbjct: 113 AAKRIRRALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDASLRFELAADFWR 172 Query: 170 RHCYPLPRE---IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIV 226 P A + E+ GP AL + R L+ ++ E S A Sbjct: 173 TRVEPAAARWPGFATWLVESGAGPAALDAQLARRLKKPLAALRWDGV-TEPDESAEAAAA 231 Query: 227 ARIDTVKQQWRDAVGELDALIESSG--IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPE 284 + W +DAL+ ++ +++R A + + E+ + LP+ Sbjct: 232 ECFAEAARMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPK 291 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE------- 337 + K +Q L TK GG TP H F+ D L A + R LA I E Sbjct: 292 AALKLTQTALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPG 351 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 +A KR R + FDD+L+ L AL + LA +R R+P A+IDEFQDTDP Q+ IF Sbjct: 352 ELAERKRTRRVVSFDDLLANLYHAL--HAHPWLAETLRARYPAALIDEFQDTDPLQFAIF 409 Query: 398 RRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 RI+ P L L+GDPKQAIY+FR AD+ TY+ AR+ A YTL N RS P +V++ Sbjct: 410 DRIF--APRGPLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAVNQRSTPAIVDAC 467 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE-TQPAMKMWLMEGESCG--VGDY 514 N+ F AF+ + + V++ + +A ++W + G D Sbjct: 468 NRFFLSNPRAFVLDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWALPGGEGTLLKRDA 527 Query: 515 QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 Q+ AQ CAA+I ++ + G L P+ DI+VLV++ ++ + V+ L Sbjct: 528 QAQAAQACAAEIARLMRGAREGRVRLGES----PLSPGDIAVLVQTHRQGSLVKRVLATW 583 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634 I SV L+ SVF T +A+++ +L A+ P LR+ALA+ GL+A + + Sbjct: 584 GIGSVELAQA-SVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGALWRMEQG 642 Query: 635 EHAWD------------VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 + VE F YR +WR+RG M R IAE L+A A GER Sbjct: 643 DGDAPPGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLMAGADGER 702 Query: 683 RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 R+TDI H++EL Q + +RWL+ L D Q+RLESD++LVQIVT+H Sbjct: 703 RVTDINHLAELTQARASAQPGIAPTLRWLAAQRL--DGGGEEAQLRLESDRNLVQIVTVH 760 Query: 743 KSKGLEYPLVWLPFITNFRVQEQA--------FYHDRHSFEAV---LDLNAAPESVDLAE 791 KSKGLEY +V+ PF+ + ++E YHD + D AA + A Sbjct: 761 KSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHDDAGDAVLHYGCDDEAAAHAARQAL 820 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK-----GE 846 E+ AE RL+YVALTR+V+ C + P + R ++ V + E Sbjct: 821 REQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFDAWLDE 880 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQ-TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTS 905 P D A L AL ++ + ++ L A+ R+ D WR+ S Sbjct: 881 PPDEAALEAAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDAWRLAS 940 Query: 906 YSGLQQR--------GHGIAQDLMPRLDVDAAGVAS---------VVEEPTLTPHQFPRG 948 +S L +L P D AA + P FPRG Sbjct: 941 FSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDILVFPRG 1000 Query: 949 ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLT--------EWITAVLQA 1000 A+ G LH LFE FT+P + L + EP L + V+ Sbjct: 1001 AAAGECLHRLFELSRFTEPESWHA-AALGALHDRPVEAEPALAARLPAMMVRLVDDVVHT 1059 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 L G+ L L + EM F P + + L+ P A LE + G Sbjct: 1060 EL-VPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVA----LEAGTLAG 1114 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 +KGFID++ H+GR++++D+KSN LG AY +A+ AM H Y LQ LYT+ALHR Sbjct: 1115 FIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLYTVALHR 1174 Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDK----EHPQQGIYTTRPNAGLIALMDEMFAGMT 1176 YLR R+ DYDY+ H G +YLF+RGV G++ RP L+ +D M G Sbjct: 1175 YLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDRMMEGGP 1234 >UniRef50_Q7NQR1 Exodeoxyribonuclease V, beta subunit n=3 Tax=Chromobacterium group RepID=Q7NQR1_CHRVO Length = 1196 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 385/1186 (32%), Positives = 552/1186 (46%), Gaps = 41/1186 (3%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + + LD L PLQG LIEASAGTGKT+TIAAL+ RLLL A P +E +LV Sbjct: 1 MNAPQALDALNCPLQGVNLIEASAGTGKTWTIAALFARLLLEERDGAPPPA---IERILV 57 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDD---KAQAAQWLLLAE 118 VT+T+AATAELR R+R + E+ + + L + + A Q L A Sbjct: 58 VTYTKAATAELRERLRRRLAEMLALLDGKADGDDFLRALAARFPEGPARDVARQRLTAAV 117 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 D AA++TIHGFCQR+L AFESG F+ +L+ED++ + DFWRR P Sbjct: 118 NGFDAAAIYTIHGFCQRVLTDAAFESGQTFQAELVEDDAARLAEIVDDFWRRRIVAAPL- 176 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 +AQV+ E + P A L +I YL P +K PD L + R + Sbjct: 177 LAQVLVERGETPDAWLAEIRPYLSK--PYLKLRAPDAVRLENARWVASERWRLLASAPEQ 234 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP----ESLEKFSQRFL 294 L + G + A+ D + W + +L + L+K L Sbjct: 235 VEEGLALFLAHPGFKANIYRPDTMARAADNLRGWLAQPDALPELDSDSRKLLDKLRPEAL 294 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI-------TRALAEIRETVAREKRRRG 347 K G + P HPLFE ++ LA D V +A E +AR + Sbjct: 295 AKGMKKGCDAPAHPLFERMEAWLAAWDVYMDQVANSLAGLKLELIAWANEELARRRGVER 354 Query: 348 ELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE 406 FDD+L+ L +AL + G +LAA + F VA+IDEFQDTDP QYRIFRR + + Sbjct: 355 SRSFDDLLTDLGAALDHPATGPLLAAQVADSFSVALIDEFQDTDPTQYRIFRRCFVEEA- 413 Query: 407 TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 + L+GDPKQAIY+FRGADIF Y+ AR + YTLDTN RS +V +VN LF + + Sbjct: 414 RPVFLVGDPKQAIYSFRGADIFAYLAARHDAERQYTLDTNRRSDEPLVATVNALFGR-EL 472 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 F+ I + PV ++ + V + + + A+ CA +I Sbjct: 473 PFLLDGIAYQPVAASPSSGGRLEVDDDRAPFNAQWLPAGEKELSKEAAELAAAEACADEI 532 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 L A ++ G R + DI+VLV + + +VR L + SV L+ +S Sbjct: 533 ARLLTLAGEDRAAIVKGASRRRLAGGDIAVLVATHSQGDRVRSELRARGVASVALTQ-ES 591 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 VF + EA EML LL A P E LR ALAT + GL+A I+ DE W+ + + Sbjct: 592 VFASREAGEMLALLHAWAEPANEGRLRRALATELAGLDAARIQAELEDETRWERQLLKNA 651 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHA 706 Q WR+ G M R + AE LL GERRLT++ H++EL+Q+ + Sbjct: 652 DDHQRWREHGFMAAWRHYFARERAAERLLPLPDGERRLTNLGHLAELIQQESEGRQGMAP 711 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA 766 L+ W + + +P + +RLESD LV+IVT+H SKGL+YP+V+ PF+ N ++ + Sbjct: 712 LLAWFAARVADPPRGEDAV-LRLESDAALVKIVTVHTSKGLQYPVVFCPFLWNGALERRG 770 Query: 767 ----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 YHD + A A +E LAE LRLLYVALTR+ + + + Sbjct: 771 AGFWSYHDGDEPWLAPEAAADDGIRQAARSEMLAEKLRLLYVALTRAQYRQYISWGWVRE 830 Query: 823 RRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA-LCDDDIAWQTAQTGDNQPWQVN 881 + A + D + + A L A + + Q Sbjct: 831 LKTAALSWLLHAPGARDLAALEALELDGGTVAAQLRAFLDQRGGAARWLEAEGRQALAGG 890 Query: 882 DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT 941 A +R W++ S++ L + A A +P Sbjct: 891 RDPGRAYAALPFERRLYAPWKIASFTSLTHDAGSHLAEAPDYDRAAAPAPAEPAADPVRD 950 Query: 942 PHQFPRGASPGTFLHSLFEDLDFTQPVD--PNWVREKLELGGFESQWEPVLTEWITAVLQ 999 FPRGA G LH +FE++ F D V+ L GF +W + I L Sbjct: 951 RFSFPRGAKAGVCLHEIFENIGFGDAEDDIRAAVQRALARHGFGEEWLDAGCDLILGALN 1010 Query: 1000 APLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD----PLSAGCPPLEF 1055 A + G L ++ + +E+EF LP+ + +A+ + L + P L+F Sbjct: 1011 AEI-APGARLRDVADHKRLIELEFTLPVKKLDVAALIAALQKPAHGLAEPFRRAAAGLDF 1069 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 V+G LKGF+DLV GR YL+DYKSN LG+ Y ++ A+ Y LQY +Y Sbjct: 1070 ASVQGFLKGFVDLVCEAGGRVYLIDYKSNHLGDACDDYRDDSLVHAVAREHYYLQYLIYL 1129 Query: 1116 LALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 +AL RY R D++ FGGV YLFLRG+ P G++ P+ Sbjct: 1130 VALRRYFAAR--GADWDGRFGGVRYLFLRGM--GEPGCGVWADMPS 1171 >UniRef50_C6NU55 Exodeoxyribonuclease V beta chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU55_9GAMM Length = 1185 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 398/1204 (33%), Positives = 577/1204 (47%), Gaps = 63/1204 (5%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 ++ LDPL LPLQG LIEASAGTGKT+TIA LYLRLLLG G A PR E+LV+T Sbjct: 1 MSRVLDPLSLPLQGSALIEASAGTGKTYTIATLYLRLLLGHGEPATPPRQ--PREILVMT 58 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTD---NPLYERLLEEIDD---KAQAAQWLLLA 117 FT AAT ELR RI ++E A + L +RLL + D +A A L A Sbjct: 59 FTRAATEELRERIALRLYETITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLENA 118 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 +DEA++ TI +C R+L +A +G E +++ D + LR +A DFWRR YPL R Sbjct: 119 FNSVDEASIHTIDAWCHRVLREHALATGHDPEAEILTDSAPLRIRAVQDFWRREIYPLQR 178 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW- 236 + T P+ LL + + P+ + L + A ++ +K QW Sbjct: 179 AAPWWLQRT-PDPETLLEQVAGLPWLDPPLPAPRAAFHDWLENAAAPLLKAGTELKAQWS 237 Query: 237 ---RDAVGELDALIESSG---IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 RD G + ++R+ + + W E+ S + Sbjct: 238 STLRDTYGRWLRELADRDPYPLNRKSLPPEKLQGALQSLDQWCVEKDASIPTAMATVAKL 297 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS-------IRDLVITRALAEIRETVAREK 343 L + K G P P D LA + + +A A + EK Sbjct: 298 GSALAECVKKGMHCPAPPSQAQFDTFLAALQQWQVDDEVLHGQALAQAAASMAALYGEEK 357 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 +R +L F+D+ L + LR GE LA A+R RFPV +IDEFQD+ +QY IF RI+ Sbjct: 358 QRLRQLEFNDLSRALWNGLRGPGGEALAEALRQRFPVILIDEFQDSSARQYAIFERIYRP 417 Query: 404 Q---PETALLLIGDPKQAIYAFRGADIFTYMKARSE-VHAHYTLDTNWRSAPGMVNSVNK 459 P++ +LLIGDPKQ+IY FRGAD+ +Y++AR++ HY L TN+RSA +V ++N Sbjct: 418 SEPWPDSLMLLIGDPKQSIYRFRGADLDSYLRARADTAPRHYVLGTNYRSAEPLVGALNA 477 Query: 460 LFSQTDDA----------FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 L+++ D+ +P+ V +AG++Q + G+ PA+ + Sbjct: 478 LYARADERCPGGAFDYRGEGDDPLPYQAVAAAGRSQRWQL--GGQEGPAITFAQHPL-AL 534 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 ++ + A+ AA I L G + R V A DI++L+R R+EAA + Sbjct: 535 TKEEFLTHFAEWTAATIAQLL--GDSTSGFVGADGKLRRVGAGDIAILLRDRKEAAIMLS 592 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL +P+ +LS + SV+ + EA+E+ L A++ PE E LR ALA ++GL D+ Sbjct: 593 ALHRRGLPAAFLSEKQSVYHSPEAEELRLWLFALLHPEDEAALRCALALPLLGLAQHDLW 652 Query: 630 TLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 L+ DE W VE + +IW G++ L + + A +LA GERRL+++LH Sbjct: 653 RLDTDEGLWAQEVERLREHARIWAHSGILTTLHRRLHQQATAARILARPDGERRLSNLLH 712 Query: 690 ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEY 749 + ELLQ+A LE AL+ L + D+ A S +RLESD H ++I TIH +KGL+Y Sbjct: 713 LGELLQQASQHLEGREALLEHLQREQDSEDNPADSHVLRLESDAHCIRIRTIHSAKGLQY 772 Query: 750 PLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRS 809 PLV+LPFI R + + L+ S +L + ERL EDLRLLYVALTR+ Sbjct: 773 PLVFLPFIAATRKDGNVPPWQVVTDDDHSTLSWQSPSAELMDRERLREDLRLLYVALTRA 832 Query: 810 VWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT 869 + LG+A G +SA+GRLL E + + + Sbjct: 833 EYALWLGLAA-----GKTASTPLWWRSAVGRLLGADEGKTPDQCLETWKRYPACRVLAAD 887 Query: 870 AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAA 929 P + + +W + S+S L Q +D Sbjct: 888 TIPSAPAP-RFAEPPEPRRTPPVYTARFERDWSIHSFSRLSQSLQTSVGPYPSPDRLD-- 944 Query: 930 GVASVVEEPTLTPHQFPRGASPGTFLHSLFEDL--DFTQPVDP-NWVREKLELGGFESQW 986 E H FP+G G FLH L + L D P D + + G+ W Sbjct: 945 ---PGAEAAGQGWHTFPQGPGAGRFLHELLQWLWRDGRWPEDWREDFLHRCDERGYAP-W 1000 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 VL W + +PL G + ++L R + EM F+ P S+ L +QLDTL RQ+ Sbjct: 1001 GSVLVHWFAVLRASPLGSLGTTFAEL--RGARTEMPFWFP-SQHLPTNQLDTLCRQYLLP 1057 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 P L + G+ GF+DLVF +GRYY+LDYKS LGE+ +AY A+ + HR Sbjct: 1058 GRERPILGKQNLHGLFHGFMDLVFAVDGRYYVLDYKSTRLGENDAAYGDTAIREDVLEHR 1117 Query: 1107 YDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 Y+LQ LY LALHR+LR R+ Y E H GG +LR G+ + L+ Sbjct: 1118 YELQAALYLLALHRHLRQRLGRQYRTEQHLGGAWLWYLRAC--ATAGGGLLYLAADPQLL 1175 Query: 1166 ALMD 1169 +D Sbjct: 1176 DALD 1179 >UniRef50_C8R0F2 Exodeoxyribonuclease V, beta subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0F2_9DELT Length = 1303 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 368/1330 (27%), Positives = 559/1330 (42%), Gaps = 187/1330 (14%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + + LP +LIEASAGTGKT++I +LYLR +L + L VE++LV Sbjct: 1 MITPQPFNAAALPSAPLQLIEASAGTGKTYSITSLYLRFIL--------EQELPVEKILV 52 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRET-TDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 ++FTEAATAEL GR+R+ + A + T++P + L+ + + L A Sbjct: 53 LSFTEAATAELHGRLRARLQAAATAFQQGGGTNDPFLQELVRNSRRPERDLRLLQRAVSD 112 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI- 179 +D+AAV TIH FC R+L AFESGM FE +L+ + + + DF + + Sbjct: 113 IDQAAVTTIHSFCHRVLQQGAFESGMPFELELLGEVTPFIDELIYDFLATLHHRDDPRLL 172 Query: 180 ------------------------------------------AQVVFETWKGPQALLRDI 197 A++ + + P L Sbjct: 173 ALWRRVYSLTELRALVREGLRHRHFPLLTGVSEQPHRIFGRSARLTYRGYAAPGCLPEPA 232 Query: 198 NRYLQG---EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDR 254 R + + A + A I R +Q W+ E+ + + + Sbjct: 233 ARLFAYGPLDRQFSAPVGAETSPWAGQMADIQRRYTRARQCWQQNREEIVKTLHDTDFLK 292 Query: 255 RKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL--------EDRTKAGGETPR 306 + + A E S LP EK + + G PR Sbjct: 293 KYRDLLAAGLVDKLAVHLAAPEPRSLVLPSGAEKMTPAVFNDPDGGVCKKINIKKGNIPR 352 Query: 307 HPLFEAIDQLLA----EPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362 H F+ + S + + LA R + G FDD+L L+ AL Sbjct: 353 HRFFDLWAHYMEPVQKLAFSYQTAIQQELLAFARRELPARLAAAGLQSFDDLLYGLERAL 412 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW------HHQPETALLLIGDPK 416 R L I +R+PVA+IDEFQDTDP QY IF++++ + L+LIGDPK Sbjct: 413 RGPGAAALRRFIGSRYPVALIDEFQDTDPVQYSIFQQVYGQHVAGGREEGRRLILIGDPK 472 Query: 417 QAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPF 475 QAIYAFRGADIF Y++A + YT+ NWR+ +V +VN LF F+ I F Sbjct: 473 QAIYAFRGADIFAYLQAAQDAGEQRYTMTINWRADRRLVAAVNALFQPVAQPFVVPGIDF 532 Query: 476 IPVKSAGKNQALRFVFKGETQP--------------AMKMWLMEGESCGVGDYQSTMAQV 521 V + L + A ++ G + + + Sbjct: 533 PAVTARPDAPDLWRETTSAGEEDEQPLQFLLPPPKLAERLNSGPGRLPARSRVEKAVPNL 592 Query: 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYL 581 AA I L+ R +R +DI+VLVRS Q+AA V+ AL + +V L Sbjct: 593 VAADIVRLLEGA--------GSLGERGLRPADIAVLVRSNQQAALVQHALQRRGVAAV-L 643 Query: 582 SNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVV 641 +R+SVF++ EA+++ LL ++ E R+A+ + ++G ++E+L DE W Sbjct: 644 HSRESVFQSTEARQLSILLHGLLGQAGEPQRRAAMLSGLLGCTRAELESLEEDEQQWQSW 703 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQ 700 + F + ++W +RG M ++RA+ + + LL G+RRLT+ H++ELL + Sbjct: 704 LLRFTRWSRLWSERGFMAVMRAIGEEQEMPARLLNHPNGQRRLTNFRHLAELLHNQEREA 763 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760 AL++WL + I + ++RLESD+ VQ++TIH+SKGL+YP+V+ P++ Sbjct: 764 HLQPPALLKWLDEGIAGLRPGSEFDELRLESDEEAVQVLTIHRSKGLQYPVVYCPYLWKT 823 Query: 761 RVQEQ-------AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 ++ F+ ++ + L E E AEDLRLLYVALTR+ C Sbjct: 824 GKRKNEEKDKFFTFHDPDDHWQGKITLQPDDEQRQARRRELFAEDLRLLYVALTRARHCC 883 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD---------AAGLRTCIEALCDDD 864 R G +SAL LL GE A L+ + ++ Sbjct: 884 ----------RAVWFGADGYQESALAYLLHGGEQGHPPADLTGLSFAELQQRLHRRVANE 933 Query: 865 IAW----QTAQTGDNQPWQVNDVSTAELNAKTLQR------LPGDNWRVTSYSGLQQRGH 914 W +A+T P + A R WRV S+S L R Sbjct: 934 PDWGLQTASAETIPAPPQHGQVQKPSAAAAADPTRLRQMQTTIDTAWRVGSFSHLIARAS 993 Query: 915 GIAQDLMPRLD-----------------------------------------VDAAGVAS 933 + + R A S Sbjct: 994 ELNATVSERDYDAAADAAATVAGDSAGAAARTATGDSDGDAAGDRGGAAPVTAAGAPPVS 1053 Query: 934 VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFE-SQWEPVLT 991 + + P GA+ G H + E + F QP + E+L + G + QW+PVL Sbjct: 1054 LRLAARVPLADLPAGAAIGNLWHRILELISFQQPDQHQEIIAEQLRIFGVDRRQWQPVLE 1113 Query: 992 EWITAVLQAPLN-ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC 1050 E + +L PL L+ + + EM F P+ + + L R F Sbjct: 1114 EALATILDTPLTAAEPFRLADIKDTERLNEMAFIGPVRQQDQPLEAADLARVFKQFPENL 1173 Query: 1051 PP--------LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 PP L F ++G LKGF+DL+ R + ++Y++DYKSN LG + Y + AM Sbjct: 1174 PPGYADRLAQLRFPALQGYLKGFVDLICRWQNKWYVIDYKSNLLGPTHADYQPANLLPAM 1233 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE-HPQQGIYTTRPN 1161 H Y LQY LYTLALHR+L R+ DYDY+ HFGG +YLFLRG+ + P GI+ RP Sbjct: 1234 SNHHYILQYHLYTLALHRHLAQRLPDYDYDQHFGGALYLFLRGLHPDLGPAAGIHHERPP 1293 Query: 1162 AGLIALMDEM 1171 I + + Sbjct: 1294 RQRIEALAGL 1303 >UniRef50_Q480N9 Exodeoxyribonuclease V, beta subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480N9_COLP3 Length = 1286 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 345/1298 (26%), Positives = 557/1298 (42%), Gaps = 165/1298 (12%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + LD + L G+ LIEASAGTGKT+ I +Y R LTVE++L++TFT Sbjct: 24 QNLDAATIELTGKHLIEASAGTGKTYNITRIY--------LRLLLERELTVEQILLMTFT 75 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 + AT ELRGRI + I + + L + I+ K + L A +DEAA Sbjct: 76 KDATQELRGRIDAFIRLALSDWDSLCLKDAYFATLAQRIEKKQREF-LLKRALLFLDEAA 134 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 +FTIHGFCQR+LN AF SG+ F + + S + Q C D++R E ++ Sbjct: 135 IFTIHGFCQRVLNQYAFTSGLPFNANMAANSSEITLQVCQDWYRS-LAKSDHECFMLLAS 193 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 W P + L ++ + D E++ + +V D Sbjct: 194 YWATPDSFLSSFSKAI---GHTSTLSVVDVESIEAEFIVLVRLAAQTLTANSDLFENGLI 250 Query: 246 LIES-SGIDRRKFNRSNQAKWID----KISAWAEEETNSYQLPESLEKFS--QRFLEDRT 298 L++ + ++R+ S W++ K + + ++P+ R Sbjct: 251 LVKKGADQEKRRDELSQLKIWLESIISKELSLLDVGEGKVKMPDGFFDGKRYARSTYKAE 310 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA-LAEIRETVAREKRRRGELGFDDMLSR 357 P + E + ++ R I ++ + IR+ V +K+ L FDD+++ Sbjct: 311 LLEAFAPVKEVKEQVKKIANNINKARAYGIVKSGIYIIRQQVIEQKKALNLLDFDDLINT 370 Query: 358 LDSALR-----SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA---- 408 L + L+ E ++LA + ++PVA+IDEFQDTDP+Q+ I + I++ Sbjct: 371 LANCLQSDSSGDEHSQLLAKQLLAQYPVALIDEFQDTDPKQFGILQSIYYGDNAKKANAG 430 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L LIGDPKQAIY FRG DIF Y+ ARS H+ +DTNWRS P M+ N+ F+ + Sbjct: 431 LFLIGDPKQAIYGFRGGDIFAYLNARSGCDHHWLMDTNWRSTPQMIEGYNQFFTYKRNGS 490 Query: 469 MFRE------------------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 E IP++PV + K+ + V + + E+ Sbjct: 491 SSEETVSNEVNKQQSESVFGFGIPYLPVLAGKKSAQAQQVILDSDKALQFIHFTNDETSN 550 Query: 511 VGDY---------QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 + + +A CA +I L + + V DI++LVR Sbjct: 551 DTNPQGDKVSQGSRPMLANWCANEIVTLLAS----------KEQTGKVNPKDIAILVRDG 600 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 EA ++ AL + SV+LS+R ++F + +A+++L LL+ V+ PE E +AL+ ++ Sbjct: 601 AEARDIKHALQQAGLDSVFLSDRANLFHSQQAKQLLGLLKGVLLPENERLFVAALSCGLL 660 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGG- 680 G +A + L DE A+ + F YR W+++G + M A N+ NLL Sbjct: 661 GFDAKKLHQLQQDEMAYQTLKFAFVDYRTQWQRQGFITM------AINLMHNLLDVPQNN 714 Query: 681 -ERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 +R LT++LH+ E+LQ A +L L+ W Q ++N ++RLESD L++++ Sbjct: 715 KDRCLTNVLHLFEILQAASVRLSQGQELLHWFEQQC-HLETNDVEAELRLESDGDLIRLI 773 Query: 740 TIHKSKGLEYPLVWLPFITNFRVQ-------EQAFYHDRHSFEAVLDLNAAPESVDLAEA 792 T H SKGLEYP V++PF + + + + L L+ + E+ Sbjct: 774 TQHGSKGLEYPYVFIPFACRHKDPLKFGNKSVSYLEYHDANGKLCLSLDGSKEAKKAMSN 833 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG 852 E AE +RLLYVA+TR+ C + H S LG+ LQ E + Sbjct: 834 EAYAESIRLLYVAITRAERRCYVLCCAF----------DAYHLSPLGKTLQFQEQESIIK 883 Query: 853 LRTCIEALCDDDIAWQTAQTG----------DNQPWQVNDVSTAEL---NAKTLQRLPGD 899 ++A + I + D S E Sbjct: 884 PLQVLKASAEHAIGIREVSLDCSIDLYLEKNDEAALHQPKNSPQEFANTEVSKFIGKIER 943 Query: 900 NWRVTSYSGLQQRGHG---------IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGAS 950 +W ++S++ L + +LD D+ + + +GA Sbjct: 944 DWWLSSFTALSRNIRHAGVSNPDRDTTDIANRQLDTDSEHTDIELLSAEQICFKLSKGAH 1003 Query: 951 PGTFLHSLFEDLDFTQPVDPNWVREKLELGGF----------ESQWEPVLTEWITAVLQA 1000 G LH + E DF++P + + L G S L +W+ V+ A Sbjct: 1004 TGNLLHDILEQTDFSEPDWQESLEKPLLAYGELNASNANSISTSFTSDDLIQWLEQVISA 1063 Query: 1001 PL-----------NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAG 1049 P +E L+ ++ E EFY P+ + + L L+ + Sbjct: 1064 PFISSHHSALTTDSENAGCLADIAFNRTLRESEFYFPM-QGEGTNALANLLTDHRNRAER 1122 Query: 1050 CPPLE--------------------------FMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 + ++ GM+ GFIDL+F ++G+YYL DYKS Sbjct: 1123 TDTGNSISTGRNSGISKTLNNTLKYPVMLPSYKKLSGMMHGFIDLIFEYQGKYYLCDYKS 1182 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 + LG+ Y A+ ++ + YDLQY +Y+LALHRYL+ + DYD HFGGV YL+L Sbjct: 1183 SHLGDSFQDYQFDALLDNVEKNYYDLQYLIYSLALHRYLKQTLVDYDVNQHFGGVYYLYL 1242 Query: 1144 RGV--DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179 RG+ + EH G+Y + I +D +F+ E Sbjct: 1243 RGMTTEPEHKGAGVYYRKITEQEINNLDALFSNKESNE 1280 >UniRef50_Q3JU29 Exodeoxyribonuclease V, beta subunit n=25 Tax=pseudomallei group RepID=Q3JU29_BURP1 Length = 1934 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 399/1282 (31%), Positives = 581/1282 (45%), Gaps = 137/1282 (10%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 A LD PL G IEASAGTGKT+ I ALY+RLLL + L +E+LVV Sbjct: 673 PSASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLL--------EKDLGADEILVV 724 Query: 63 TFTEAATAELRGRIRSNIHELRIACL-RETTDNPLYERLLEEID------DKAQAAQWLL 115 TFT+AATAEL RIR+ + +L A + +P RL E D AA+ + Sbjct: 725 TFTKAATAELHERIRARLAQLAHALDTGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVR 784 Query: 116 LAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP- 174 A R D+AA+ TIH FCQR L F + M F ++ D+ LR++ ADFWR P Sbjct: 785 RALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGALRFELAADFWRTRVEPV 844 Query: 175 --LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 A+ + E GP AL + R L+ ++ + A A DT Sbjct: 845 AAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRWDGLHAADDGAESAA-RAHFDTA 903 Query: 233 KQQWRDAVGELDALIESS--GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 WRD G L L+ + +++R ++ +D + + E+ + LP + K + Sbjct: 904 AAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKLT 963 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRE-------TVAREK 343 Q LE TK GG TPRH F+ L A ++ R L+ + + +A+ K Sbjct: 964 QSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQRK 1023 Query: 344 RRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 R R + FDD+L+ L AL ++ L +R R+P A+IDEFQDTDP Q+ IF I+ Sbjct: 1024 RTRRVVSFDDLLANLYRAL--DAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIF-- 1079 Query: 404 QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQ 463 P L L+GDPKQAIY+FR AD+ TY+ AR+ A YTL N RS P +V++ N++F Sbjct: 1080 APAGPLFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVDACNRVFGA 1139 Query: 464 TDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA--MKMWLME--GESCGVGDYQSTMA 519 AF+ + + PV++ + +A A ++W + + D Q A Sbjct: 1140 NPRAFVLDGLDYEPVRAGSRVRAPLVDATDPLAGAGDFRIWTLPVGDDVLTKRDAQRHAA 1199 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 CAA+I ++ + L P+ AS I+VLV++ ++ + V+ L I SV Sbjct: 1200 HACAAEIARLMRGAREHAVTL----GGEPLAASGIAVLVQTHRQGSLVKRVLAAWGIGSV 1255 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 L+ SVF T++A+++ +L A+ P LRSALA+ GL+A + L + D Sbjct: 1256 ELAQA-SVFATIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQD 1314 Query: 640 ----------------------------------VVVEEFDGYRQIWRKRGVMPMLRALM 665 VE F YR +WR+RG M R L Sbjct: 1315 GIDAAAGGASGNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLA 1374 Query: 666 SARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 725 IAE L+A A GERR+TD+ H++EL Q + +RWL+ + Sbjct: 1375 GELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQR--REGGGDDA 1432 Query: 726 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE-------QAFYHDRHSFEAVL 778 Q+RLESD++LVQIVT+HKSKGLEY +V+ PF+ + ++E A + S AVL Sbjct: 1433 QLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVL 1492 Query: 779 DLNAAPESVDLAE----AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834 E+ + A E+ AE RL+YVALTR+V+ C L R K+ V Sbjct: 1493 HYGCDDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVL 1552 Query: 835 QSAL-----GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ-TGDNQPWQVNDVSTAEL 888 + EP + A L +AL + +P + A Sbjct: 1553 NWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATR 1612 Query: 889 NAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD--------------------- 927 A+ R D WR+ S+S L + D + Sbjct: 1613 AARRATRGLRDAWRIASFSSLASAIARDESGIARAADDEMRPDHDALAAALGADALEPPD 1672 Query: 928 ------AAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLEL 979 A A+ E FPRGA+ G LH L E +F +R E Sbjct: 1673 AAAAIAPAPAAAPRELAGDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHER 1732 Query: 980 -----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 + ++T + + L G+ L+ L + EMEF P A Sbjct: 1733 PVEAELALAERLPAMMTRLVADLAATEL-VPGMRLAALDPARRLTEMEFLFPAP----AL 1787 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYT 1094 + L R LE + G +KGFID++ H+GR++++D+KSN LG AY Sbjct: 1788 DFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYG 1847 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE----H 1150 ++A+ AAM H Y LQ LY +ALHRYLR R+ YDY+ H G +Y+F+RGV + Sbjct: 1848 ERALDAAMAHHAYHLQALLYMVALHRYLRVRMHGYDYDAHIAGYLYVFVRGVRPDWRNGG 1907 Query: 1151 PQQGIYTTRPNAGLIALMDEMF 1172 G++ RP LI +D + Sbjct: 1908 ASAGVHARRPARALIEALDALM 1929 >UniRef50_C1ACJ1 Exodeoxyribonuclease V beta subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ1_GEMAT Length = 1210 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 372/1236 (30%), Positives = 544/1236 (44%), Gaps = 90/1236 (7%) Query: 1 MSDVAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 MS A D R P G LIEASAGTGKTF IA +RLLL + + + Sbjct: 1 MSRAAGPFDVARSPFPPGISLIEASAGTGKTFNIAMSVVRLLLEQDAAGQPI-VSGLGGI 59 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRE--TTDNPLYERLLEEIDDKA-QAAQWLLL 116 LVVTFT AAT EL R+R + N E L E + + AA Sbjct: 60 LVVTFTNAATEELVTRVRRMLQLAHEVWSGALYAKSNSEIEILRELANGREPWAATRAQE 119 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A R +D AVFTIHGFC+R+L+ A ESG F +L++D + L +A D+WRR Y P Sbjct: 120 ALRALDALAVFTIHGFCKRVLDEFALESGAPFSMELLDDPTPLIEEAMFDWWRRTFYIDP 179 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 A V W P + ++D + + V+ E + +D Sbjct: 180 ALAAWAVHRQW-SPLSFVQDYAMWRRWPDAVLDPMIRLSEARSVLTTVAKRMLDVWSPDS 238 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWIDKIS-AWAEEETNSYQLPESLEKFSQRFLE 295 + + + S A + + + A + + L + + Sbjct: 239 LRGTAAAVKWNKGAVLATEDGLASLDALIQEARAGSLAAMQGLAGALNIDALQAKANKVG 298 Query: 296 DRTKAGGETPRH-PLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDM 354 + +A + P+ A L A + V L ++ + V KR R +GFDD+ Sbjct: 299 KQNRATADGIADWPIAVAATALAAAIQQLVLAVRADCLQDVDDRVRTLKRERSLMGFDDL 358 Query: 355 LSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIG 413 L +L + L ++ E +LA AIR +F A+IDEFQDTD Q+ +FR + QP L LIG Sbjct: 359 LGQLHAVLAAQGSEGLLARAIRQQFQAALIDEFQDTDSHQFHVFRIAFAGQP---LFLIG 415 Query: 414 DPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREI 473 DPKQAIYAFRGAD+ Y++A + Y+L+ N+RS P MV +VN LFS++ F+ EI Sbjct: 416 DPKQAIYAFRGADVRAYLEAARQASHRYSLEFNFRSTPPMVQAVNALFSRSTAPFVEPEI 475 Query: 474 PFIPVKSAGKNQALRFVFKGETQ----PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDW 529 F P + + + V +G ++ + + CA++I + Sbjct: 476 AFHPATARNFDPNPKGVAGSHGLHWLFVPPDTRNGNSVPTPIGQARTLLFRACASRIASY 535 Query: 530 LQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFE 589 ++ V I+VLVR E ++ L + SV +S V + Sbjct: 536 IKQE---------------VPPGRIAVLVRKGFEGVEMVQVLAEAGVRSV-VSGLGDVMQ 579 Query: 590 TLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN--NDEHAWDVVVEEFDG 647 +LE E+ +L+A+ P + +R+ALAT++ G D+ L E W+ ++ E Sbjct: 580 SLEMAELQRVLEAIAVPRDPSRVRAALATTLWGATHEDLVRLASPEGEREWEEILTEVAS 639 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHA 706 R++W +G + +L L +R + L G+RRLT++ H ELL A Q S Sbjct: 640 LRELWATQGTLQLLERLFESRAVVSRYLTYTDGDRRLTNLRHAQELLHGAAEQDALSIEG 699 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA 766 +RWL EP +++RLESD VQIVT+H+SKGLEY LV+ P + R E Sbjct: 700 TLRWLDAARREPAETRGVRELRLESDDDAVQIVTVHRSKGLEYDLVFCPTLWGVRRVEPD 759 Query: 767 FYHDRHSFEAVLDLNAAPESVD---LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRR 823 H V+ + +P + AE ERLAED RL+YVALTR+ + + P+ Sbjct: 760 APVLVHEQGRVVYDHGSPRLAERTAQAERERLAEDCRLVYVALTRARFRTYVAWGPIGNA 819 Query: 824 RGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIE---ALCDDDIAWQTAQTGDNQP--- 877 + QSAL LL G + D D P Sbjct: 820 PNGSE------QSALSWLLFDGAAAPDRDGPAAVADQLRAAPDAWQGMLRSLVDAHPSLM 873 Query: 878 -------WQVNDVS------------TAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ 918 WQ +L + R + + S++ L + + Sbjct: 874 ALDMVDTWQPIAPVAAAPQAPPLTGHARQLPSVPSLRERFSTFSIASFTSLTAGVYESLR 933 Query: 919 DLMPRL---DVDAAGVASVVEEPTLTPHQF---PRGASPGTFLHSLFEDLDFTQ--PVDP 970 M D DA A+ V T PH F P GA PGT LH++FE F Sbjct: 934 AEMSEQVARDRDAQPDATPVTTVTNDPHDFRTFPAGAVPGTVLHAIFEHAHFDGSPAAWQ 993 Query: 971 NWVREKLELGGFESQWEPVLT----EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 +L + GF+ + T + +LQAPL G +L+ + A + E +F LP Sbjct: 994 EIADRELLVLGFDEDEHELRTASTVRMMQRLLQAPLPGLGFALAAVPASRTRREWQFLLP 1053 Query: 1027 IS---EPLIASQLDTLIRQFD-----PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 ++ + L + Q + L F ++ G L GF+DL+F HEGR+Y+ Sbjct: 1054 LASADHVMTRQALAAVFAQHGGAHGAAYADQLRRLSFNRLHGYLTGFVDLLFEHEGRWYV 1113 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGV 1138 +D+KSN LG D+ AY A+ M H Y LQY LY +A HR+L R+ DYDY+ H GG Sbjct: 1114 VDWKSNQLGADNGAYKSSALQTVMDDHHYTLQYHLYLVAAHRFLAQRVPDYDYDTHIGGA 1173 Query: 1139 IYLFLRGV-DKEHPQQGIYTTRPNAGLIALMDEMFA 1173 Y FLRG D G + RP A LI + Sbjct: 1174 AYAFLRGFADASVDGTGWFVHRPPAALIRALSAALG 1209 >UniRef50_A9M3L9 Exodeoxyribonuclease V beta subunit n=30 Tax=Neisseria RepID=A9M3L9_NEIM0 Length = 1204 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 345/1233 (27%), Positives = 530/1233 (42%), Gaps = 95/1233 (7%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS + DPL +P+ G LIEASAGTGKT+ IAAL+ RL++ VE +L Sbjct: 1 MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQK--------NVERVL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRI----ACLRETTDNPLYERLLEEIDDKA-------- 108 VVTFT+AATAEL+ R+R+ + ++ + + D+ L + + + Sbjct: 53 VVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPA 112 Query: 109 ------------QAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE 156 + L A Q D AA++TIHGFCQR+L AF F+ +L E++ Sbjct: 113 LLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEED 172 Query: 157 SLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDE 216 DFWR P +A + F+ PQ +L I YL + P D + Sbjct: 173 GDRLLIPAQDFWRERVSNDPV-LAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLK 231 Query: 217 TLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 + + + + ++ + +++ +++ + Sbjct: 232 QAQRNAETSWQTVCRLLPELEAGFWRI-----HPDLNGNSYRKNSFGNLFKELAQKSAAG 286 Query: 277 TNSYQLPESLEKFSQ---RFLEDRTKAGGETPRHPLFEA---------IDQLLAEPLSIR 324 + ++ ++ + LE K G E ++ L + Sbjct: 287 QLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATM 346 Query: 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMI 383 + + + ++A K+ R E GFDD+L + +AL E LA A+ + A+I Sbjct: 347 IRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWETALI 406 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTL 443 DEFQDTDP QY IF++I+ Q L L+GDPKQAIY+FRGADI+ Y++A + YTL Sbjct: 407 DEFQDTDPLQYEIFQKIFIAQN-RPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTL 465 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 TN+RS ++ S+ LF + F+ I + V +A L + Sbjct: 466 ATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQ--VRWLHE 523 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 + E + A CA +I L G P+++ DI+VLVR+ E Sbjct: 524 NDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFK----GYPLQSGDIAVLVRTHNE 579 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A V AL ++ SV LS R+SVF + EA + L+ + P R TLR L + + G Sbjct: 580 AVMVSAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGY 638 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 +A + N +E E W + G+ ++ I LL+ G R Sbjct: 639 DAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNG-RS 697 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHI-LEPDSNASSQQMRLESDKHLVQIVTIH 742 LT+ + ELL Q + AL +WL I L ++ ++ +RLESD+ LV+IVT+H Sbjct: 698 LTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLADNNGGDNRAIRLESDEDLVKIVTMH 757 Query: 743 KSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED 798 SKGL+YPLV+ PF + Q + + E + + + E +AE Sbjct: 758 ASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQLSEDEQKQYADEEMAER 817 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD----TDVHQSALGRLLQKGEPQDAAGLR 854 LRLLYVALTR+ ++ A + R E A L+ Sbjct: 818 LRLLYVALTRAEEQLNIYAAYSTNTADTPLAYLIEGSPQDSRETVRQTYAQEKDGIAMLK 877 Query: 855 TCIEALCDDDIA----WQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ 910 L D+ A T ++ N TAE A ++ R TS++ L Sbjct: 878 RNWRRLADNAPAGTDFVFTEDAPPPAAYRGNADQTAEFAANSIPERGFRFVRHTSFTTLS 937 Query: 911 QR---GHGIAQDLMPRLDVDAAGVASVVEEPT-----LTPHQFPRGASPGTFLHSLFEDL 962 + G +D P LD V ++ E ++ H FP+G G LH + E+ Sbjct: 938 RHTQTPDGSEEDACPSLDAAETSVPAMPSETPTASDGISIHNFPKGTQAGLCLHEILENF 997 Query: 963 DFTQPV--DPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 F Q ++ +KL+ GFE W P + E A + PL LS + + + E Sbjct: 998 KFGQAAAGQETFITDKLKKYGFEEIWLPAVAEMAEACQKTPLTG-AYGLSDILSECRCPE 1056 Query: 1021 MEFYLPISEPLIASQLDTLIRQF----DPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGR 1075 M F L + + D R + A L+F V G L GFID+V + +G Sbjct: 1057 MGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGN 1116 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 ++DYKSN LG D+SAYTQQAM A+ H Y LQ +Y +A RY + R Sbjct: 1117 ICVIDYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVS-- 1174 Query: 1136 GGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALM 1168 V YLFLRG+D + G++ +A + + Sbjct: 1175 --VRYLFLRGLDGKGG--GVWRWDIDADTLEQI 1203 >UniRef50_D1N1Q3 Exodeoxyribonuclease V n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q3_9BACT Length = 1235 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 340/1254 (27%), Positives = 545/1254 (43%), Gaps = 104/1254 (8%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ V + LD L PL+G LIEA+AGTGKT+ I L +R +L R + +E+LL Sbjct: 1 MTPV-QELDSLNCPLRGLFLIEAAAGTGKTYNIQNLVVRAVL--------ERDIPIEKLL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLL----EEIDDKAQAAQWLLL 116 VVT+T AA AEL GRIR + A + E L E + + L Sbjct: 52 VVTYTRAAAAELAGRIRQVLSGTLAALEKRLPPESGREAQLVARALETLTSEECRKRLRT 111 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A D A V TIHGFCQ++L NAFESG+LF ++L D + L + D +RR YP Sbjct: 112 ALFDFDAATVTTIHGFCQKVLRENAFESGILFSRELDNDCAELLEKLADDLYRREFYPDD 171 Query: 177 REIA-----QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 ++ + + L R + VI++ A+ ++ Sbjct: 172 DARHSALRQALLRQAGYTAERLAELALRRIARPDLVIRSNAEAGTDPAADLEELAEGFGE 231 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 ++++ L + + F+ + ++I + + + + + L F+ Sbjct: 232 LRREELPEC-----LANFPYLFNKPFSGKDFDRFIAAYEKFRADGVPTGEFLQLLAAFTP 286 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL-------------------VITRAL 332 L + A ++ F A++Q I + V+ A+ Sbjct: 287 EALTEALCARKKSGAPSQFAALEQRQEALAGILEQSELQRIFQLAELAPRFGDTVLLAAV 346 Query: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 E+ R K++ FDDM+ + AL E L +++ ++P+ ++DEFQDTDP Sbjct: 347 EELLAAYDRAKQQANLQTFDDMIRDVHRALM-EPESRLQRSLQQQYPLGIVDEFQDTDPI 405 Query: 393 QYRIFRRIWHHQPET-------ALLLIGDPKQAIYAFRGADIFTYMKARSE----VHAHY 441 QY IF++I+ E L L+GDP+QAIY FRG DI TY +A + A Y Sbjct: 406 QYAIFKKIFIDPAEPGGAVPAATLFLVGDPRQAIYGFRGGDIDTYNRAADDVFRYGGAKY 465 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKM 501 TL N+RSA GM+ +VN LFS+ F I + + K + + Sbjct: 466 TLTRNFRSAAGMIEAVNLLFSRHASPFASERITLPEISAPAKPELGNRPESALLVAGRE- 524 Query: 502 WLMEGESCGVGDYQSTMAQVC---AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 + + D + C A +I + L + R +R DI++LV Sbjct: 525 ---DRRPLRITDLPDSDGDACLAAAVEIANALLCDDTLHIPPRSDTPERRLRPGDIAILV 581 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 + EA ++ L IPSV+ SN +SV+ + EA+E+L +L A+ PER + +ALAT Sbjct: 582 KKWSEAYALKPLLAARMIPSVF-SNSESVYRSDEARELLTVLAAIAAPERSGEVLAALAT 640 Query: 619 SMMGLNALDIETLNNDEHAWDVV--VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 + G ++ L ++E + ++ F R+ WR + M L+ +I Sbjct: 641 GLGGCGLAELLRLGSEEGSNELAEHQTAFARLRREWRPETFIVMFSGLLKYFDIPARFAR 700 Query: 677 TAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHIL-EPDSNASSQQMRLESDKH 734 GGER+L ++ + +LLQ+ ++ + S +AL+ +LS + D ++ + LESD+ Sbjct: 701 QEGGERKLANLHQLGDLLQQESSRRKLSINALLNFLSDAVEGRIDDSSDEVKQILESDRD 760 Query: 735 LVQIVTIHKSKGLEYPLVWLP----FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLA 790 V+I T+H SKGLEYP+V LP F T R F+ D H V +L+AA + Sbjct: 761 SVKITTVHSSKGLEYPVVILPSLFRFATGSRSPGGNFHEDGH---LVYELHAAGSMNERE 817 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA 850 E E+LRL YVALTR+ + C + + + + P Sbjct: 818 HDEATMENLRLAYVALTRAKYRCHVLWGKDGASSYCNSPLDWLVKFREATPEEAAHPTRF 877 Query: 851 AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ 910 +R L ++ +T D S + R+ D++R+ S+S L Sbjct: 878 LKMRKDAPRLLPVELEEKTLPVSTQVYRPELDRSRQLAPWEWNHRVLRDHYRIASFSSLS 937 Query: 911 QRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ------FPRGASPGTFLHSLFEDLDF 964 G D D + + + T + P G + G +H + E+LDF Sbjct: 938 PAASGRLDPADDGADHDDSQPEEQLPALSETAPEKNPALALPGGKAFGNAVHEILEELDF 997 Query: 965 TQPVD--PNWVREKLELGGF--------ESQWEPVLTEWITAVLQAPLNE---TGVSLSQ 1011 T P D KL G + + + + +APL++ G +LSQ Sbjct: 998 TAPFDTLRELAARKLRFYGLLAGDGSGADRERLDAVAAMVERTRRAPLHDAQGDGFTLSQ 1057 Query: 1012 LSARNKQVEMEFYLPISEPLIASQLDTLIRQF---DPLSAGCPPLEFMQVRGMLKGFIDL 1068 + ++ E+ F ++ L+ + + P G L GFIDL Sbjct: 1058 IGRADRLSELRFLFGFGRKFRTGEIAELLGDYAEREFRFTDWPEWNTPVDGGFLNGFIDL 1117 Query: 1069 VFR----HEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 VFR RY L+D+K+N L + + +T + AAM Y LQY YT+AL ++LR Sbjct: 1118 VFRRRTASGDRYSLVDWKTNRLDGEPANFTPAQLPAAMSHSYYFLQYLFYTVALVKFLRR 1177 Query: 1125 RIADY---DYEHHFGGVIYLFLRGVDKEHPQQ--GIYTTRPNAGLIALMDEMFA 1173 + DY FGGV YLFLRG+ P G++ TRP+ L+ ++ + + Sbjct: 1178 TFGKFDAEDYRDRFGGVYYLFLRGIRAGQPPNGDGVFFTRPDFELVTALEALIS 1231 >UniRef50_A7NB27 Exodeoxyribonuclease V, beta subunit n=21 Tax=Francisella RepID=A7NB27_FRATF Length = 1217 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 323/1277 (25%), Positives = 548/1277 (42%), Gaps = 173/1277 (13%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ + LQG +IEASAGTGKTF I LY+RLLL + L +LV+TFT+ Sbjct: 3 NLNANTITLQGRHIIEASAGTGKTFNITKLYIRLLL--------EKKLLPSNILVMTFTK 54 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AT E+ GR+ I ++ + E ++ + + L + ++DEAA+ Sbjct: 55 DATQEIIGRVEKEIRDVLASYTDEKKESD------------KENYKHLKRSLLEIDEAAI 102 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 FTIHGFC+++L+ AF SG+ + + D S + + DF+R+H + Sbjct: 103 FTIHGFCKKVLSEQAFASGIEMDVSMEVDTSDIFQKVVEDFFRKHINKSETNFGYLQIYK 162 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 P+ L D+ ++ ++ + + + + D V + Sbjct: 163 LHTPEKFLDDLENIIRSNYEILTKQAISLDEFKI----LKKQQLELFINNHDIVDDFLYK 218 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 + ++ + ++ W + + + R + + Sbjct: 219 LGKGEPQGKRVDE------YHRVLEWLKLDNQTLFPENISIITDGRKISAKLIKPIFIGV 272 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 L + ++ + I +A +IR+ A+ K ++G L FDD++++L +++ Sbjct: 273 KELRDLQQEIKQAQAAQ---FIRKACLQIRQDFAKAKDQKGVLDFDDLITKLCQSVKK-- 327 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-------HHQPETALL--------- 410 L ++ ++PVA+IDEFQDTD +QY I I+ H LL Sbjct: 328 SPELVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHKGKNLLTNGLNLKDT 387 Query: 411 -------------------LIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRS 449 +IGDPKQAIY FRG DIFTY+KA+ +++DTNWRS Sbjct: 388 RLREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEENQWSMDTNWRS 447 Query: 450 APGMVNSVNKLF----------SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM 499 M+ + N+LF Q I + VK++ F +P Sbjct: 448 TGEMIKAYNRLFYKQDYQSEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFDDNFKPIN 507 Query: 500 KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 + E D + +A +I L + V +DI++LV Sbjct: 508 YFYYEVAEDDNKSDIDTNLALWTVNEITRLLN--------------TQKVAENDIAILVE 553 Query: 560 SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 + ++A ++ AL + SVYLS RD+V+ + EA+E+L L++ + E ++ L+ AL+TS Sbjct: 554 NGKQAKIIQQALQAKNLSSVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKRALSTS 613 Query: 620 MMGLNALDIETL--NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 ++G A + ND AWD +E+ RQ W K G M + ++ Sbjct: 614 LLGGRADKFISYIDENDVSAWDDEIEKAKSLRQQWHKYGFMAFIMQIIHE----NFTQKA 669 Query: 678 AGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 ER +T+ILH++EL++ A + + + L++W + ++ S ++RLESD +L++ Sbjct: 670 DSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQL--NNTATSEGELRLESDDNLIK 727 Query: 738 IVTIHKSKGLEYPLVWLPFIT-----NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA 792 I+TIH SKGLEY +V++PF F Y+D + V + A+ Sbjct: 728 IITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTVYKIGKDDSVKQQADK 787 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG 852 E + E +RL YVA+TR+ C +GVA +Q L + Sbjct: 788 EVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLARFLGYQKDDDWLEKIQSITANPA 847 Query: 853 LRTCIEALCD-DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ 911 ++ + + D + + + + D + L A + +L D+W + S+S + + Sbjct: 848 NQSLLINIADMREFSLKNLSSKD------KNSDYDTLKANYISKLENDSWEMLSFSKISK 901 Query: 912 RGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT-QPVDP 970 L +D + +GA G LH++ E DF+ +D Sbjct: 902 -SKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNILHNVLEHTDFSLGEIDG 960 Query: 971 NWVREKLELGG-FESQWEPVLTEWITAVLQA---------------------PLNETGVS 1008 N ++E+++ ++ L W+ L+A + + G Sbjct: 961 NLLQEQMDRYKVVAAEDFDNLKLWLEECLEAHIPYIDTSFSSLNESIQYGLFDIKDKGFC 1020 Query: 1009 LSQLSARNKQVEMEFYLPISEP-LIASQLDTLIRQFDPLSA---------------GCPP 1052 L + E EFY P+ L + + +++++ L+ Sbjct: 1021 LKTIPNSKTLKEAEFYFPVKNENLYKTNILEILQEYRELTKLKTYSHSYVGGNLPTNYQD 1080 Query: 1053 LEFMQVR--------------GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAM 1098 L ++R GML GFIDL+F +EG++Y+ DYKSN+LG+ Y QQAM Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140 Query: 1099 AAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTT 1158 Q+ YDLQY +Y++AL +YLR I Y+YE HFGGV Y +LRG+ G+Y Sbjct: 1141 QEKNQSSFYDLQYLIYSVALDKYLRQNIESYNYEKHFGGVYYFYLRGM---KDGYGVYRA 1197 Query: 1159 RPNAGLIALMDEMFAGM 1175 RPN +I + +F G Sbjct: 1198 RPNLEIINKLASLFNGD 1214 >UniRef50_C4GIJ8 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIJ8_9NEIS Length = 1220 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 338/1253 (26%), Positives = 530/1253 (42%), Gaps = 122/1253 (9%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 L+PL +P+ G LIEASAGTGKT+ IAAL+ RL+L +VE++LV Sbjct: 1 MTTPAPLNPLTIPVHGTHLIEASAGTGKTWNIAALFTRLVLLEQQ--------SVEKILV 52 Query: 62 VTFTEAATAELRGRIRSNIHELRIAC------------------LRETTDNPLYERLLEE 103 VTFT+AATAEL+ R+R+ + + A + + LL + Sbjct: 53 VTFTKAATAELKTRLRARLDQALTALKRTPNAQTQPEILRQNSLDDKNRPDDFLFNLLSQ 112 Query: 104 I---DDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE-SLL 159 + + + L A D AA++TIHGFCQR+L AF F QL ED Sbjct: 113 ALASESQDRLQLRLTAAISNFDNAAIYTIHGFCQRILQDFAFYCQAPFNIQLNEDPNDNP 172 Query: 160 RYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA 219 A D+WR P P + AQ+V++ + P+ L+ ++ YL + P +A Sbjct: 173 NLTAIQDYWRTQIAPNPVQ-AQLVYQHNQTPEKQLQALSPYLARPYLQFRQPES--SHIA 229 Query: 220 SRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNS 279 Q V Q L ++++ +N + ++ ++ + + Sbjct: 230 QTQQQFQQAWQHVCAQLPQIQAAFWQL--HPHLNKQSYNAARCEDRFAQLHQFSGCPSPA 287 Query: 280 YQL------PESLEKFSQRFL------EDRTKAGGETPRHPL------FEAIDQLLAEPL 321 + F+ FL + ++K + P PL A+ + Sbjct: 288 TIWQLLTESKHTQAIFTAEFLQSKANQDKKSKQKIQLPAEPLALINNTLGALATAAQRCI 347 Query: 322 SIRDLVITRALAEIRETVAREKRRRGELG----FDDMLSRLDSALRSE--SGEVLAAAIR 375 ++ + + I + + + FDD+L + AL E + LA A+ Sbjct: 348 QAQEQALIQLAHNIIHYLRTQNEANKKTSPSRQFDDLLLDVYHALSPEKPHAQALARALS 407 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE----------TALLLIGDPKQAIYAFRGA 425 + A+IDEFQDTDP QY IF+ + P TA ++GDPKQAIY+FRGA Sbjct: 408 ANWQTALIDEFQDTDPLQYAIFQAAFMQPPRQPENKCNQNKTAFYMVGDPKQAIYSFRGA 467 Query: 426 DIFTYMKARSEVH--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 DI+ Y+ A + +TL N RS +++++N LFS+ + F +IP+ P ++A Sbjct: 468 DIYAYLAAAEHIPPANRHTLSQNHRSHAALIHAINALFSR-PNPFALDKIPYHPARAARS 526 Query: 484 NQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 L GE + + + AQ CA +I L A +G+ Sbjct: 527 QSKLP---SGEAPLRLTWLNQDPTADDSDTLTQRAAQWCAQEIAVTLHAHAQGKT----- 578 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 P+ A I++LVR+R+E ++ L I SV LS RDS++ E Q + L+ + Sbjct: 579 ----PISAGQIAILVRTRKEGTLMQRQLKTHHIQSVLLS-RDSIYAEEETQAVYALISFI 633 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRA 663 + P+R L L+ + AL I+ LN +E + + Q W++ GV L+ Sbjct: 634 LNPQRTQHLIYLLSGCLYNHTALQIQQLNQNEAQLTQWTDAANQAAQTWQQHGVYTALQQ 693 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNA- 722 + LL+ +R LT++ I E+L + + AL +WL Q I ++A Sbjct: 694 FLRQFQAETTLLSQRN-DRTLTNLHQILEILAAQDEKGQPPSALQQWLGQQIQASQNHAN 752 Query: 723 --SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY---HDRHSFEAV 777 +RLESD++LV+IVT+H +KGL+YP+V+ PF+ R Q+ + H H + + Sbjct: 753 PQDHALLRLESDENLVKIVTMHAAKGLQYPVVYCPFVWKARNQQPPEWQIIHQNHQAQLI 812 Query: 778 LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 A+ E+ +EDLRLLYVALTR+ ++ +A + HQ Sbjct: 813 HKTQLTDSDQQQAQTEQRSEDLRLLYVALTRAEEQLNIYIASYPQTENSPLAYLIQHQQP 872 Query: 838 ---------LGRLLQKG-EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 L + + E + D TG + + Sbjct: 873 EKGKSKKDEYAHLQAQAYRQSWQNFIAQHPEHIQWHDTLTLPTYTGSLKTSEPQTNEPTT 932 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVE-----EPTLTP 942 A + + + TS++ L + + P + + + T Sbjct: 933 YRATPIPPRSYRSPQHTSFTALSRHSTTQPTEHTPLDPSEQTTQPQNPQGSLKPDDPPTI 992 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGF-ESQWEPVLTEWITAVLQ 999 QFP+G + G LHSL E F QP ++ L+ QW+ + + I Sbjct: 993 AQFPQGTAAGICLHSLLERYPFAQPGRQNLPLIQTTLDQHNINSQQWQDTIAQLIEDTRH 1052 Query: 1000 APLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF----DPLSAGCPPLEF 1055 PL SLS L +N E F L + L T Q ++A L F Sbjct: 1053 TPL-LPRTSLSTLPPQNILTEFGFLLH-TRNFTLGSLKTWFAQHSKLPPEITAAAQNLSF 1110 Query: 1056 MQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 V+G + G+IDL+ + E G +LDYKSNWLG S YTQ A+ A+ H Y LQ LY Sbjct: 1111 RDVQGYINGYIDLLAQTETGDTLILDYKSNWLGNSPSDYTQAALNQAIAQHHYALQALLY 1170 Query: 1115 TLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIAL 1167 +A RYL R A H + YLFLRG+D G++ + Sbjct: 1171 AIATARYLTSRNAQPQTIH----IRYLFLRGLDG-ITSNGVWQWDIPTSSLKQ 1218 >UniRef50_B2I7Y5 UvrD/REP helicase n=11 Tax=Xanthomonadaceae RepID=B2I7Y5_XYLF2 Length = 1243 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 368/1284 (28%), Positives = 539/1284 (41%), Gaps = 157/1284 (12%) Query: 4 VAETLDP-LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + DP L LPL G RLIEASAGTGKTFT+A L RL+ R + +L V Sbjct: 1 MNTPHDPYLTLPLHGVRLIEASAGTGKTFTMATLVTRLV--------VERGWRIGHILAV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRET------------------------------- 91 TFTEAAT ELR RIR + + Sbjct: 53 TFTEAATQELRTRIRERLILAARLVPQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVT 112 Query: 92 ------------TDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNL 139 T L L + L A ++D AA+FTIHGFC R+L Sbjct: 113 NSASPEPPDVVLTLQILRTHLAATDETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLRE 172 Query: 140 NAFESGMLF-EQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDIN 198 +A +G F L+ + L ++ AD WR+ P I ++ G L +D+ Sbjct: 173 HALHTGQSFIPPTLLASDRDLLHELAADIWRQEIAD-PEAIQDLIHLWPAGAPMLAQDLT 231 Query: 199 RYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFN 258 L L + T++ W+ L + + ++ + Sbjct: 232 DLLYQPHLSPAPSLAAPVVLPDAALAVAE--TTLRHLWQTEGAALRSALHTALEEGVLNK 289 Query: 259 RSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG------GETPRHPLFEA 312 +S +A ++ + W E + + Q +AG G +P P+ EA Sbjct: 290 KSYKADALNDLWDWMERWSLAPNAYPEPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSEA 349 Query: 313 IDQLLAEPLSIRDL-------VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE 365 + L SI + R A R + KR+R +DD++ R+ AL Sbjct: 350 VQHYLDALTSIETARAQHRLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGP 409 Query: 366 SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-------LLLIGDPKQA 418 L ++R ++ +A++DEFQDTD Q+RIF ++ L LIGDPKQA Sbjct: 410 HRLALVRSLRQQYRMALVDEFQDTDVAQWRIFHHVFGDTEHAHTADLTPALFLIGDPKQA 469 Query: 419 IYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA-FMFREIPFIP 477 IY FRG D+ TY+ A + L+ N+RS P ++ ++ L++Q DA F+ I F P Sbjct: 470 IYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHP 529 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLMEG----------ESCGVGDYQSTMAQVCAAQIR 527 V+ + G PA+++W + ++ C I Sbjct: 530 VQPGTHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIH 589 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 WL Q G ALL D RPV A DI+VLVRS +EA ++ AL IP+V + S+ Sbjct: 590 QWLADAQTGRALL----DGRPVGAGDIAVLVRSHREATLMQQALARAGIPAVAA-GKRSL 644 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDG 647 T EA E L LL A++ E LR+AL+T ++GL A I T ++D A + Sbjct: 645 LTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIATFDHDSVASRHWQRQALH 704 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHAL 707 +R+ G + +L L + A LL+ GERRL++ L + ELLQ+ + H L Sbjct: 705 WRERLHSGGPLGLLTDLCALH--AARLLSLFDGERRLSNYLQLGELLQQVHLRALGLHGL 762 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA- 766 V WL++ I E ++ +Q +RLESD VQIVT+HKSKGLEYPLV+LP++ R Sbjct: 763 VDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFLPYVAIGRSHAGPG 822 Query: 767 ---FYHDRHSFE-AVLDLNAAPESVDLA----EAERLAEDLRLLYVALTRSVWHCSLGVA 818 HD L+ A + E+ AE+ RLLYV LTR+ + Sbjct: 823 RYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQEQRAEEARLLYVGLTRAKHALWIATG 882 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 + ++AL LL + I + TA P Sbjct: 883 TFYQT----------ERTALWPLLGDPQAVP-----------AQPGIVFDTAVPPAILPR 921 Query: 879 QVNDVSTAELNAKTLQR-LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 + + A+T QR +W V S++ L A D R+ G Sbjct: 922 LTPEQPHSVPPARTAQRGALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAW 981 Query: 938 ---------PTLTPHQFPR--GASPGTFLHSLFEDLDFTQ-----------PVDPNWVRE 975 P PR G G LH +FE DF + + + Sbjct: 982 PQDAIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVPVPATERGVLLQ 1041 Query: 976 KLELGGFESQWEPVLTEWITAVLQAPLN---ETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 L G+ ++ +T ++ L GV L + ++ E+EF I + Sbjct: 1042 ALRGSGYVAEDVEAGIALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVIQATAV 1101 Query: 1033 ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 + L L+ L ++ G++ G IDL++RH GR+Y+LDYKSN L Sbjct: 1102 DALL-ALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLP----D 1156 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHP 1151 YT ++ AM YDLQ +YT+ALHR+LR R+ D YDY GG+ YLF RG+D P Sbjct: 1157 YTPAHLSVAMTDSEYDLQALIYTVALHRWLRFRLRDAYDYARDMGGIRYLFCRGMDATRP 1216 Query: 1152 Q-QGIYTTRPNAGLIALMDEMFAG 1174 G+YT LI +D MF+G Sbjct: 1217 NAAGVYTQSFAPALIEAVDAMFSG 1240 >UniRef50_B5EAR6 Exodeoxyribonuclease V, beta subunit n=5 Tax=Geobacter RepID=B5EAR6_GEOBB Length = 1130 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 339/1088 (31%), Positives = 487/1088 (44%), Gaps = 72/1088 (6%) Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 FTI G R++ F+ + E + + + + F T Sbjct: 27 FTIAGVYLRLVLEQKFDVSRILVVTFTEAATKELKERIRNKLKEAENG---------FLT 77 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 L+ + + Q + + + A I ++ +D E +L Sbjct: 78 GATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDE--AAIFTIHGFCQRMLQDNPFESGSL 135 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 ++ + + A+ +I+ + + E K S L + P Sbjct: 136 CDTELVTDQGKILMEIAQDYWRINCYGQPEE--RIAAAGAAKVSPESLLKLVQRVCGDPN 193 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 + E + +R + + KR + FD L A Sbjct: 194 AAVIPDPPADANELDDWLQGLKRGFFDYLRAELPKRKRLKNLRSFD-DLLLDLHAALLRP 252 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 L IR R+ A+IDEFQDTDP Q+ IF I+ E LIGDPKQAIY+FRGAD Sbjct: 253 ASTLPRLIRERYQAALIDEFQDTDPLQFAIFDAIYPVGHEAPFFLIGDPKQAIYSFRGAD 312 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 IF YM A +TL N+RS G++++VN LF+ + F++ +I F V++A K + Sbjct: 313 IFAYMGAAQATKERHTLLQNFRSEAGLIDAVNALFASRELPFLYPQIGFNKVEAAPK-EK 371 Query: 487 LRFVFKGETQPAMKMWLME----GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 R V G+ + +K+WL G+ GD + + AA+I L+ G G+ + Sbjct: 372 SRLVEAGQRKAPLKLWLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGADGKLTVEE 431 Query: 543 GDD----------ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 R V DI+VLVR+ ++A ++ ALT IPSV S ++FE+ E Sbjct: 432 LRKDAEEGSENWVQRAVEPRDIAVLVRANRQAKLMQRALTHRGIPSVLCSAG-NLFESDE 490 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIW 652 A E+L LL AV P E+ LR ALAT ++G++ ++ L +DE W+ ++EEF Y W Sbjct: 491 AAELLRLLSAVAQPGHESLLRGALATDLVGVSGTELARLMDDEKGWEEILEEFRSYHDTW 550 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE-SEHALVRWL 711 M M M R + + LLA GERRLT++LH E + +A A++ WL Sbjct: 551 NSGSCMSMALQFMEKREVRKRLLAEPMGERRLTNLLHAIETIHQAQVNERLGMEAVISWL 610 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN--FRVQEQAFYH 769 + I E + ++RLE+D+ VQ+VTIHKSKGLEYP+V+LPF E A +H Sbjct: 611 ACRITE-EPKKDEYEIRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEYAGKDEGALFH 669 Query: 770 DRHSFEAV-LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 D + + E A E LAE LRLLYVALTR L Sbjct: 670 DEDGRVVLDIGSEQMGEHKAQAAREALAESLRLLYVALTRGKHRTYLTWGVFK------- 722 Query: 829 GDTDVHQSALGRLLQKGE----------PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 D SAL LL GE D + A I D P+ Sbjct: 723 ---DAGDSALHYLLHPGETPVKGQVTLSDADIRKRLDTLAASSAGRIEVLDLPAADLAPY 779 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEP 938 + +D +L +WRV S++ L H A +L R + V + Sbjct: 780 RAHDKKAPDLAPLPFTGAISRDWRVASFTSLSSHKHHTA-ELPDRDEGSPVEERPVHDVE 838 Query: 939 TLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITA 996 FP+GA G FLH +FEDLDFT+ + V+E+L+ GF W + + + Sbjct: 839 PTGIFAFPKGAKAGIFLHKIFEDLDFTRVGEQLSPLVKEQLDKHGFAPDWSQAVRDMVQN 898 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR------------QFD 1044 VLQAPL + ++L+Q+ + EMEF+ P+S + R Sbjct: 899 VLQAPLGDGEIALAQVGLERRLTEMEFFFPLSHVTSDRLREAAARFTAGHGTAGVAGLPV 958 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 L+ L F V+GML GFIDLVF H GRYY++D+KSN LG Y Q A+ M+ Sbjct: 959 DLADLFSRLSFAPVQGMLLGFIDLVFEHGGRYYIVDWKSNHLGNTPGNYGQAALKKEMEE 1018 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGL 1164 + Y LQY LYT+AL YLR RI YDY+ HFGGV YLFLRGVD G+Y RP L Sbjct: 1019 NFYPLQYLLYTVALDNYLRLRIPGYDYDRHFGGVFYLFLRGVDG--TGNGVYADRPPREL 1076 Query: 1165 IALMDEMF 1172 IA + E+ Sbjct: 1077 IAHLAEVL 1084 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 103/349 (29%), Positives = 147/349 (42%), Gaps = 11/349 (3%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 + D L PL G LIEASAGTGKTFTIA +YLRL+L + V +LVVTF Sbjct: 1 MKRFDLLHTPLAGRNLIEASAGTGKTFTIAGVYLRLVL--------EQKFDVSRILVVTF 52 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 TEAAT EL+ RIR+ + E L TD+ L E LL+ D ++A + L A R DEA Sbjct: 53 TEAATKELKERIRNKLKEAENGFLTGATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDEA 112 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVF 184 A+FTIHGFCQRML N FESG L + +L+ D+ + + D+WR +CY P E Sbjct: 113 AIFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIAQDYWRINCYGQPEERIAAAG 172 Query: 185 ETWKGPQALLRDINRYLQGE-APVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243 P++LL+ + R A VI PP D L + + L Sbjct: 173 AAKVSPESLLKLVQRVCGDPNAAVIPDPPADANELDDWLQGLKRGFFDYLRAELPKRKRL 232 Query: 244 DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE 303 L + + + + + + G E Sbjct: 233 KNLRSFDDLLLDLHAALLRPASTLPRLIRERYQAALIDEFQDTDPLQFAIFDAIYPVGHE 292 Query: 304 TPRHPLFEAIDQLLAEPLSIRDLVI--TRALAEIRETVAREKRRRGELG 350 P + + + + + + +A E + + G + Sbjct: 293 APFFLIGDPKQAIYSFRGADIFAYMGAAQATKERHTLLQNFRSEAGLID 341 >UniRef50_C7PDT4 Exodeoxyribonuclease V n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT4_CHIPD Length = 1152 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 328/1200 (27%), Positives = 533/1200 (44%), Gaps = 104/1200 (8%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 + + +PLQ LIEASAGTGKT++IA L LRL+L L+++E+L+VTFT Sbjct: 8 QDFNAATVPLQDSNLIEASAGTGKTYSIAILVLRLVL--------ENGLSIKEILMVTFT 59 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK---AQAAQWLLLAERQMD 122 +AA AEL RIR + + T + RL+EE ++ A Q L A +D Sbjct: 60 KAAVAELEERIRLFVRTAYKISQGQETRDENIFRLVEEAVERNGLAAVQQQLRDAVLFLD 119 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 E AV TIH FCQ+ LN AFE+ LF ++I+D L + FWR++ L + + Sbjct: 120 ETAVLTIHSFCQKTLNEFAFETDQLFGAEMIQDTKTLIAEEVQKFWRKYVTTLHIRLLEK 179 Query: 183 VFETWKGPQALLR---DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 V+E P + +N ++ G+ P + + ++D + Sbjct: 180 VWE----PDMMEGINVALNEHMGGKRYYAYQPGKRYAIKQKEQEEWLHQLDAI------- 228 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 + A +E +D R + +T + E F + + R Sbjct: 229 -DDKKAAVEKILMDYVINERETLRGLCEGNRY---AKTALLPCMDDPELFIKTVADKRNS 284 Query: 300 AGGE----TPRHPLFEAIDQLLAEPLSIRDLVITRA----LAEIRETVAREKRRRGELGF 351 A + + + E + VI+R + EI V K+R L + Sbjct: 285 AKYISTLLPDMLAHMDEVAVVDEERKGVVQQVISRLYCFAIEEIAAGVKGFKKRNNLLSY 344 Query: 352 DDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLL 411 DDM++ L +L + L +R ++ +DEFQDTD QY IF + + T L Sbjct: 345 DDMITNLHKSLVDRNNPKLEEVLREKYKAVFVDEFQDTDRMQYEIFEKAFGES--TILFY 402 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD----- 466 IGDPKQ+IYA+R ADIFTY KAR+ V Y ++ N+RS+ + ++N+ F Sbjct: 403 IGDPKQSIYAWRKADIFTYFKARASVQHVYGMNRNFRSSEPFIAAMNQFFLPVPGFDTFY 462 Query: 467 -AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQ 525 I +I V S N E + ++ + +++ AAQ Sbjct: 463 FEGEGSAINYIKVDSPESNTKGLLFRGDEPDVPISVF--------NTSNSTELSESVAAQ 514 Query: 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRD 585 + L++G+ + + D+ RPV+ SDI +LVR+ ++ +V+ L L IP+V + + Sbjct: 515 VAALLRSGE---YFIGDEDERRPVKPSDIGILVRTGRQGREVKAQLARLGIPAVTVDDAK 571 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 645 V ++ EA +L+L++A++ P +++ AL + GL + TL++ +V + F Sbjct: 572 -VLQSEEATYLLYLMEAMLAP-DRSSINRALLSPFTGLKLESVLTLDD-----EVTLGLF 624 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLAT--AGGERRLTDILHISELLQE-AGTQLE 702 Y+ W++ G+ + ++ N+ LL GER ++++ ++EL+ + + Sbjct: 625 GNYKNRWQQDGIYTAMMDFVTDFNVRNVLLHAHTESGERIISNLFQLTELVHQIQSRKNL 684 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV 762 S LV WL + I + + R+ESD+ V IVTIHKSKGLEY +V P++ Sbjct: 685 SMTELVSWLKRGIDGMATEGDEYEQRMESDEEAVNIVTIHKSKGLEYKIVMAPYLDFVEN 744 Query: 763 QEQAFYHDRH----SFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 + AF+ R + V E + E+ RLLYVA+TR V+ C + Sbjct: 745 KYIAFFSFRDPLTGDYVGVEKKRMTDEQQASYARQAEQENRRLLYVAITRGVYKCFVF-- 802 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 K ++ + + G+ E + + D Sbjct: 803 --RNNYHKKSTLLTFLEALVAAAPSPDIIRFEEGMPVAPEQQAGNKVLPLAPVDPDMPVR 860 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEP 938 V L NWR SY+ L + +L R + Sbjct: 861 FV---------------LKEQNWRKMSYTMLAAKAEH---NLRTRASQKEDPYET----- 897 Query: 939 TLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN-WVREKLELG--GFESQWEPVLTEWIT 995 H RGA G LH LFE+++F++ W+ E + G + + P+L + + Sbjct: 898 -FIFHTLKRGAKTGNLLHFLFENINFSEDSRWEKWITETVRRFVPGQQDLYGPMLRQLLE 956 Query: 996 AVLQAPLNETG--VSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 VLQ + G L+ + + E EF P+S + + Sbjct: 957 HVLQTDITVDGRTFPLAAIIWHKRIPEFEFDFPVSAFFPDMLNGLSDDRTSVVVRRFHEQ 1016 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 ++ G++ G +DL F HEGRYY+LD+KSN+LG YT A++AAM + Y LQY + Sbjct: 1017 GSSELEGIMNGKMDLFFEHEGRYYILDWKSNYLGGTPEDYTPTAVSAAMNENNYHLQYLI 1076 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 YTLA +YL R+ +DYE FGGVIY F+RG+ + GI+TT+P I ++ + Sbjct: 1077 YTLAAKKYLESRLHAFDYETQFGGVIYCFVRGIR-KGQSTGIFTTKPPLSKILQLESSLS 1135 >UniRef50_A2C8A3 Possible UvrD/REP helicase subunit B n=2 Tax=Prochlorococcus marinus RepID=A2C8A3_PROM3 Length = 1274 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 318/1299 (24%), Positives = 505/1299 (38%), Gaps = 157/1299 (12%) Query: 1 MSDVAET----LDPLRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLT 55 M++V+ PL G RL+EASAGTGKTF L L Sbjct: 1 MANVSREPEYCFQSNDYPLGPGLRLLEASAGTGKTF--------ALAHLALRLLTEGGHQ 52 Query: 56 VEELLVVTFTEAATAELRGRIRSNIHELRIACLR-------ETTDNPLYERLLEEIDDKA 108 + ELLVVTFTEAA AELR RI + + D L + L D + Sbjct: 53 ISELLVVTFTEAAAAELRSRIGQRLEHALEGLEALDHGATDKPPDLVLEQWLQCNGHDVS 112 Query: 109 QAAQW---LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACA 165 Q QW LL+A +D A + TIHGFC+R L A ESG + + +L + L + Sbjct: 113 QRHQWISSLLVALESLDLADITTIHGFCRRTLRRQALESGAVMDPRLDDSGQQLVQEVVH 172 Query: 166 DFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQI 225 D+W++ L + + + + L + + + + ++ + ++ +Q Sbjct: 173 DYWQQQVLALDAQHVRGLLHAGLSVENLAKGLLKLDSDPSLALETHTSNLQSSQPLSSQF 232 Query: 226 VARIDTVKQ----QWRDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWA 273 A + Q W+ ELD + S D R F+ + ++ W Sbjct: 233 DAYLQQCWQQFVDHWQRHGSELDIALSSRAADWRSLGSKDTKPFSPKPKKDRFAILNHWL 292 Query: 274 EEETNSYQLPES---------------LEKFSQRFLEDRTKAGGETPRHPLFEAIDQ-LL 317 E + S Q + + F + + GE +PL A+ + + Sbjct: 293 EAFSQSPQHSDQPFTPGYAAIRDQSLLTDYFHPAVVCTVARRCGEENPNPLMPALQRSIA 352 Query: 318 AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE---------SGE 368 + V AL +A +R+RG + + ++LS LD +SE Sbjct: 353 DLCDGPAEQVWNHALHWGLSALAERRRQRGVMSYAELLSALDPKPQSETIAQPHPDQQAP 412 Query: 369 VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIF 428 L A+R R+ VA+IDEFQDTDP Q+R+ + H P+ LL++GDPKQAIY FRG D+ Sbjct: 413 WL-EALRQRYRVALIDEFQDTDPVQWRLLEGAFAHSPDHLLLMVGDPKQAIYRFRGGDLN 471 Query: 429 TYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALR 488 TYM ARS+V L N+R+ +++ +N L + A Sbjct: 472 TYMHARSKVDRIDALLDNFRTTTPLLDGLNDLMAPGLRRSKLDVPSLTACSQATPRSLPL 531 Query: 489 FVFKGETQPAMKMWLMEGESC----GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD 544 V + + G + + + A + D LQ+ Sbjct: 532 GVNPLQLLNLDEATHPTGSIPSPLTSKTNLEEQIPTAVAHAVLDLLQS------------ 579 Query: 545 DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 D+ SDI +LV ++AA +R L + +P+ +S D V + AQ + L + Sbjct: 580 DSYNFSPSDICILVGRHRQAASIRQGLAVAGVPTRLVSQGD-VLTSEAAQVLQRFLDCLA 638 Query: 605 TPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRAL 664 P ++L+ +++M N + + D + F + + G+M L L Sbjct: 639 RPSHSSSLKLVACSALMQWNTEQLAHAECNGE-LDQLALRFRNWAINLPRLGLMGCLAEL 697 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEP-DSNA 722 + R IA+ + R L D+ ++L+QE Q WL + L+P D Sbjct: 698 LEGRTIAD----LSERGRLLGDLYQCAQLVQEVIHRQGLDASTAADWLRRQRLQPVDPVP 753 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV-QEQAFYHDRHSFEAVLDL- 780 +Q + + V +VT+H+SKG+EYP+V P++ + + L Sbjct: 754 EVRQPHSDVAESAVAVVTVHRSKGMEYPVVICPYLWQAPSLPHGPLWRSGSESHWCVALS 813 Query: 781 ---NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 + + L E RL YVA+TR+ L A ++ G+ A Sbjct: 814 TGWGKGWQLSQQSHQASLQEAERLAYVAITRACSLLMLIWARGAKQEGNPLSAWLFGVDA 873 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP 897 + +Q P+ + ++ Q WQ + +T QR Sbjct: 874 IDAAMQDLTPER---MSAWLDRQQLPITVVPAQLKSMQQRWQPPPLQGELALGQTPQRRL 930 Query: 898 GDNWRVTSYSGLQQRGH--GIAQDLMPRLDVDAAGVASVVEEPTLTPHQ----------- 944 +W +SYS H + P + EP L Sbjct: 931 DLSWGRSSYSAWVSAAHTYDGSAPADPLELEEGRDSDQQKLEPMLKLQDQSAIADASRST 990 Query: 945 -------------FPRGASPGTFLHSLFEDLDFTQPVDPN----WVREKLELGGFESQWE 987 FPRGA G LH + E LDF +P+ + E+L G + Sbjct: 991 PTLNWSDQSPLGQFPRGAVAGDCLHRILERLDFCKPLQDPNAVIVIEEELRRAGLDITLL 1050 Query: 988 PVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP 1045 + + + VL P+ + G+ L+QL + + E+ F LPI+ + L F Sbjct: 1051 ASVQDGLDRVLSTPIGGSLGGLRLNQLHGQRRIHELSFDLPIAHQGKVLRSFDLASVFHL 1110 Query: 1046 LSAGCPPLEFMQV--------RGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGEDSS- 1091 L + ++ RG L G IDLVF E R+++ D+KSNW+G S Sbjct: 1111 NPLARFGLPYAEMIKGLNVCSRGFLTGSIDLVFTDAEDSLEARWWVADWKSNWIGRRDSE 1170 Query: 1092 ---------AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 Y AM M H Y LQ LY +ALHR+LR R+ Y+ + H GG +Y+F Sbjct: 1171 GQAVACGPLHYDDSAMEQQMLLHHYPLQAHLYLVALHRFLRWRLPSYEPKLHLGGYVYVF 1230 Query: 1143 LRGVDKEHPQQGIYTTRP---------NAGLIALMDEMF 1172 LRG+ G T+P + L+D + Sbjct: 1231 LRGLPGAKAMNGRSLTKPVPGLIVEPAPLERVLLLDRLL 1269 >UniRef50_A6LPC4 ATP-dependent helicase/nuclease subunit A n=4 Tax=Clostridium RepID=ADDA_CLOB8 Length = 1245 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 210/1276 (16%), Positives = 437/1276 (34%), Gaps = 211/1276 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + +R++ P+ +++LLVVTFT AA AE+R R Sbjct: 18 NCNLLVAAAAGSGKTAVLVERIIRIITNE------ENPVDIDKLLVVTFTNAAAAEMRER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I +E +NP ++ L ++ A + T+H FC Sbjct: 72 IADAIS-------KELENNP--------------RSKNLQRQLTLLNRANITTMHSFCLD 110 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQV--VFETWKGPQ 191 ++ N + ++ + L++ + + + + +F ++K Sbjct: 111 VIKNNYHRIDLDPSFRIGDQTEGILIKSEVIEELFEDKYEEEDIGFTNLVEIFSSYKNDN 170 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT------VKQQWRDAVGELDA 245 L + + + + + + +D + Q + + Sbjct: 171 NLKNLVLDLYNFTMSGPWPEKWLINSAEAFNIKQLDELDRTNWVRVLAQSVKIELDGYVK 230 Query: 246 LIESS------------GIDRRKFNRSNQAKWIDKISAWAEE---ETNSYQLPESLEKFS 290 ++E + +D S K + E +S Q Sbjct: 231 MLEKAIEVTSKTDGLEPYMDNLLMELSYIKKAYESTDNGLEAMFNSLSSVQFSRLKSIKK 290 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--------------ITRALAEIR 336 + ++ ++ + R + + I +LL S+ + + E Sbjct: 291 DKVSDELSQNTVKKIRDDVKKGISELLNNAYSVNPQQMLRNIQGSYPYIKKLIELVLEFS 350 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGE------VLAAAIRTRFPVAMIDEFQDTD 390 ++ KR R L F+D+ L E +A + F ++DE+QD++ Sbjct: 351 ARFSKRKRERNILDFNDLEHLCLKILSDYDDENNIIPSSIAMNFKEYFDEVLVDEYQDSN 410 Query: 391 PQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTL 443 Q I + + + ++GD KQ+IY FR A +++ + L Sbjct: 411 NVQETIINLVSRKNDDNPNVFMVGDVKQSIYRFRQAKPELFIEKYNTYDSSNGVNRKIQL 470 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFR-----------EIPFIPVKSAGKNQALRFVFK 492 N+RS +++ VN +F + + F K Sbjct: 471 YKNFRSRREIIDGVNYIFKEVMSEVVGELEYTDEEALNLGADFKENKFKDTIVGGPIEVN 530 Query: 493 GETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL---QAGQRGEALLMNGDDARPV 549 + + + + E + ++ A +I++ + + Q + L + RP+ Sbjct: 531 IIDKSHNETVVEDNEEQEEINNVILEGRIVAKRIKELMSKSEDEQIFKVLDKESGEYRPL 590 Query: 550 RASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 + DI +L+R ++ + + D L+ IP VY FE++E + ++ LL+ V P + Sbjct: 591 KYRDIVILLRATKNWSEPLLDELSAEGIP-VYADTGSGYFESIEIRTIISLLKVVDNPMQ 649 Query: 609 ENTLRSALATSMMGLNALDIETLN----------------------NDEHAWDVVVEE-- 644 + + S + + +MG +A +I + +E DV++ + Sbjct: 650 DIPVISVMRSPIMGFSAEEISDIRLVKKDNYFYENIKYISEEAYNSINESYSDVLIAKCK 709 Query: 645 -----FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG- 698 D +R + + L + A G R ++ + + ++ Sbjct: 710 YFINSVDKWRNKSIYMAIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQFEK 769 Query: 699 TQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 T + + ++++ I S L ++ +V+I++IHKSKGLE+P+V+L + Sbjct: 770 TSFKGLFNFINFINKLI--KSSGDMGSAQVLGENEDVVRIMSIHKSKGLEFPVVFLCGLG 827 Query: 759 NFRV----QEQAFYHDRHSFEA---------VLDLNAAPESVDLAEAERLAEDLRLLYVA 805 + YHD + A + E L+E++R+LYVA Sbjct: 828 KNFNLMDLNKSILYHDELGLGPDFIDIGKRFSIGTLAKESIKKKMKFETLSEEMRILYVA 887 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKG----DTDVHQSALGRLLQKGEPQDAAGLRTCIEA-- 859 TR+ + + +K D ++ + +L+ D + C Sbjct: 888 CTRAKEKLIMTGTVGNLEKSAEKWLGSASLDYNRISPSEVLKGKSYLDWICMSLCQHRDG 947 Query: 860 --LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW---------------- 901 L + DN W+V+ + +L KT + Sbjct: 948 SVLSESFGTENLILKDDNSRWKVSFWNKGDLIDKTKTEVLEQGEGYELTIINNKPYDNYL 1007 Query: 902 -----RVTSY-----SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGA-- 949 ++ SY + + + DL R + + E +F + Sbjct: 1008 YEEVDKILSYKYPFKASTTIKSNISVSDLKRRHAEEDYDTEQLYREKVKVVPKFLQEKKG 1067 Query: 950 ----SPGTFLHSLFEDLDFTQPVDPNWVREKLELG-----GFESQWEPVLTEWITAVLQA 1000 GT +H + + +DF + ++E+L + + + I + ++ Sbjct: 1068 LTPSEKGTAVHFVMKKIDFNRVSSTEEIKEQLHELFEKEFLLSEELKVINPTKILSFFRS 1127 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 L + + L E+ FY IS + LD + + + Sbjct: 1128 DLGKKILDL-NCRGEKIYREIPFYTEISSLEVDKTLDNIYK---------------DEKI 1171 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 L+G ID F ++G L+DYK++++ E +Y Q Y+ A+ + Sbjct: 1172 RLQGIIDCFFEYKGDIILIDYKTDYIMEGHED---------EFKEKYRKQLDYYSDAIFK 1222 Query: 1121 YLRHRIA-DYDYEHHF 1135 ++ Y Y + Sbjct: 1223 LTGKKVKYKYLYSFYL 1238 >UniRef50_B7GM51 ATP-dependent helicase/nuclease subunit A n=1 Tax=Anoxybacillus flavithermus WK1 RepID=ADDA_ANOFW Length = 1209 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 222/1252 (17%), Positives = 412/1252 (32%), Gaps = 210/1252 (16%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ A+AG+GKT + ++ +L RP+ V+ LLVVTFT AA AE+R RI Sbjct: 24 QHTLVAAAAGSGKTAVLVERIIQKILHK------ERPIDVDRLLVVTFTNAAAAEMRQRI 77 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + +K + L + +A++ TIH FC + Sbjct: 78 GEALERAL---------------------EKEPHSLHLRRQLSLLQKASISTIHSFCLDV 116 Query: 137 LNLNAFESGMLFEQQLIEDES-LLRYQACADFWRRHCYPLPREIAQVVFETW---KGPQA 192 + + G+ ++ ++ L + + Y E V + + + Sbjct: 117 IRKYYYVIGIDPVFRIADEGEMALLKEEVLETLFEQYYAENDEPFLTVVDRYTSDRTDAD 176 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID--------------TVKQQWRD 238 L I R + + + + ARID ++ Sbjct: 177 LQTLILRLYEFSRSHPNPSGWLQQIVHMYDVEEGARIDDLPYAHYLFQAVDLALEAAEYR 236 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 L E G D ++ + I K+ E F+ + + Sbjct: 237 LAQALQKTKEPGGPDYLYDTLASDEQVIAKLKEARHESWQQLHEAMKNVSFATAKRKPKD 296 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLV---------------------ITRALAEIRE 337 A E + + DQ+ E SI + + I + + Sbjct: 297 GAYDEQLVEDVKKLRDQVKKEISSITEELFSFQPVTYVRHLHEMKPIVTTIVQMVQRFAH 356 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDP 391 + +K +G + F D+ LR+ S A R +F ++DE+QDT+ Sbjct: 357 LLQAKKDEKGIVDFSDLEHYCLRILRAPSLEHELKPSEAALYYRAQFAEVLVDEYQDTNM 416 Query: 392 QQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HYTLD 444 Q I R + + + ++GD KQ+IY FR A+ +++ + L Sbjct: 417 VQESILRLVSNDDEATGNMFMVGDVKQSIYGFRLAEPSLFLQKYNRFTKDGDGGLRIDLA 476 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS +++ N +F Q + + + + + P +W+ Sbjct: 477 KNFRSRKEILDGTNFIFRQLM----TETVGDMRYDDDAALRFGAQDYPDKQIPVECVWIN 532 Query: 505 EGESCGVGDYQ------STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 E + + Q A+ A +I+ L + R + DI +L Sbjct: 533 EAKEESDEEEQEDVTAVQLEARWIAKKIKQLL--AEPFFVYDRRLKGERRLMYRDIVILC 590 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 RS A+ + + +P VY F E ML LL+ + P ++ L + L + Sbjct: 591 RSMSSASAMLEEFRKQNVP-VYAELSSGYFSATEVSIMLSLLKVIDNPYQDIPLAAVLRS 649 Query: 619 SMMGLNALDIETLN---NDEHAWDV-------------------VVEEFDGYRQIWRKRG 656 ++GL+ + + D ++ + +R R++ Sbjct: 650 PIVGLDEEALARIRLAKKDGAFYEALCAFVQEPHDDELHEKMKRWLASLSEWRTAARQKP 709 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHI 715 + ++ L N + + GG++R ++ + + Q T +R++ + Sbjct: 710 LADLIWQLYRETNFYDYVGGMPGGKQRQANLRALYDRAKQYEQTSFRGIFRFLRFIER-- 767 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYH------ 769 L+ + L + +V+++TIHKSKGLE+P+V+L + Sbjct: 768 LKEREDDFGAARSLTEQEDVVRMMTIHKSKGLEFPVVFLAGAAKSFNMQDLRSDYVLDKD 827 Query: 770 -------DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 ++ A A + + LAE++R+LYVALTR+ + Sbjct: 828 FGLGMRFVHPTWRASYPTVAQLAIKKKMKWQLLAEEMRILYVALTRAKEKLYIVCTAKDM 887 Query: 823 RRGDKKGDTDVHQS---ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQ 879 KK + S +++K + A A I D W Sbjct: 888 EAKKKKWQEVAYTSTWELPAYVIEKAKS--YADWIGYALARHQQGICSSATVLHDPSLWD 945 Query: 880 VNDVSTAELNAKTLQRLPGDN--------------------------WRVTSYSGLQQRG 913 ++ V EL + Q + W T R Sbjct: 946 IHIVPAHELEQEDAQANEHRDIVEAIQQLQPVAIKSEYEEEVNRRLFWTYTHAPATVLRA 1005 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG-----ASPGTFLHSLFEDLDFTQPV 968 +L + D+ + + +F + A GT +H + + +D T+ V Sbjct: 1006 KQSVSELKRQRDIYGGHAEQPFRKELVERPRFLQAKMMTPAERGTMMHLVMQHVDVTKEV 1065 Query: 969 DPNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 + VRE++ E Q + E I A P+ + ++L E+ F Sbjct: 1066 TVDAVREQIARMVNGEWLTEEQATVIDVESIVAFFNTPIGKRMQRATRLE-----REVPF 1120 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 YL E +++G ID VF E L+DYK+ Sbjct: 1121 YL--------------------------AHEMEGETVVVQGVIDCVFEDEHGLVLIDYKT 1154 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHH 1134 + + + RY Q LY A+ + + + Y Y Sbjct: 1155 DRVSWMNDP-------KQQLKRRYKGQLALYREAIEAIWKREVTETYVYAFD 1199 >UniRef50_A3DH19 ATP-dependent helicase/nuclease subunit A n=7 Tax=Clostridium RepID=ADDA_CLOTH Length = 1251 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 219/1298 (16%), Positives = 433/1298 (33%), Gaps = 244/1298 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + L+ A+AG GKT + +R + P+ ++ LLVVTFT AA E+R R Sbjct: 19 EKSLLVSAAAGAGKTAVLVERIIRKITDE------ENPVDIDRLLVVTFTNAAATEMRER 72 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I E + +NP + + +A + TIH FC Sbjct: 73 IAQAISE-------KLEENPGSANI--------------QRQLTLLGKACITTIHSFCLE 111 Query: 136 MLNLNAFESGMLFEQQLIEDESLLRY--QACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ N + + ++ ++ +A + + + +++ Sbjct: 112 VIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENEDFFELLECYGGNRDD- 170 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHA------------------------------ 223 R + + I++ P +E L Sbjct: 171 -RALQDMVLNLYDFIQSSPWPEEWLEKMTESMNIPDGTDFGKTLWGSVLLSSVKIELEGL 229 Query: 224 -----------QIVARIDTVKQQWRDAVGELDALI-----ESSGIDRRKFNRSNQAKWID 267 + + ++ + + + + +DAL+ ES R FN ++ Sbjct: 230 KEMISRALEILKDASGLEKYRAVYMEDLANVDALLKLLNEESEMQWDRIFNALQGFEFAT 289 Query: 268 KISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV 327 E + + ++ + + ++ + + + + + + L + Sbjct: 290 LPRCGREVDKDKQEIVKKIRDDVKQRIRKFREKVITSVSNEIISDLKALY-----PKMKC 344 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVL----AAAIRTRFPVA 381 + + ++ E A +K R+ + F+D+ L R E G ++ A + R RF Sbjct: 345 LANLVKQLAEKYAEKKNRKSVVDFNDLEHFCLEILTERKEDGSIIPSRTAISYRERFAEI 404 Query: 382 MIDEFQDTDPQQYRIFRRIW-HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--- 437 ++DE+QD++ Q I I + ++GD KQ+IY FR A +++ + Sbjct: 405 LVDEYQDSNLVQETIINMISKGDDASPGVFMVGDVKQSIYRFRQARPELFLEKYNTYLPD 464 Query: 438 ----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFK 492 L N+RS ++++VN LF Q + + G Sbjct: 465 KGSPCRKIILSRNFRSRREVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKED 524 Query: 493 GETQPAMKMWLMEGESCGVG-----------------------DYQSTMAQVCAAQIRDW 529 ++ L++ E D A++ +I + Sbjct: 525 ITVGGEVEFHLIQTEDEDKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILEL 584 Query: 530 L---QAGQRGEALLMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRD 585 + + G+ ++ R V D+ +L+R+ R A D L+++ IP V+ Sbjct: 585 MKPDENGRYFSVFDKAKNEYRRVEYRDVVILLRTTRNWAEVFVDELSVMGIP-VFADTGT 643 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN------------- 632 F+T+E Q ML LLQ + P ++ L S L + ++G ++ L Sbjct: 644 GFFKTVEVQVMLSLLQIIDNPLQDIPLLSVLRSPIVGFTTDELAELRLVDKKALLFDALK 703 Query: 633 --------NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 +E +R++ +L L + + A GE+R Sbjct: 704 KLAESGQGEAAGKASAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQ 763 Query: 685 TDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 ++ + E ++ T + + ++ + L+ L + ++V+I++IHK Sbjct: 764 ANLRILYERARQFEETSYKGLFNFINFIDK--LKSSRGDMGSAKILSENDNVVRIMSIHK 821 Query: 744 SKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEA---------VLDLNAAPESVDLA 790 SKGLE+P+V + + H F A + Sbjct: 822 SKGLEFPVVIVAGCGKKFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKI 881 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH-----------QSALG 839 +AE L+E++R+LYVALTR+ + A R+ +K S Sbjct: 882 KAETLSEEMRILYVALTRAREKLVITGAVKNVRKAVEKWLDSASVQKSRLSAYDMLSGAN 941 Query: 840 RLLQKG----EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVST---------- 885 L G ++ GLR C+ + + + W DV + Sbjct: 942 YLDWIGPALLRHKNCGGLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGES 1001 Query: 886 ------AELNAKTLQRLPGDNWRVTSYS-----GLQQRGHGIAQDLMPRLDVDAAGVASV 934 L + + R S+S + +L R + + Sbjct: 1002 EFIKWLDSLEKEEPSEYAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEVVSEDVMQ 1061 Query: 935 VEEPTLTPHQFP------RG---ASPGTFLHSLFEDLDFTQPVDPNWVREKLEL-GGFES 984 + + P +G A GT LH + + LD+ + + E + Sbjct: 1062 FPDYMPVLVKKPMFLEEKKGLTYAEKGTILHFVMQHLDYGREDIEAQIEEMVAKDLLTPQ 1121 Query: 985 QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 Q + V I L +PL + L++++ E+ F + I + ++ + Sbjct: 1122 QAQSVDAARIRRFLNSPLGKRM-----LASKSINREVPFNIEIPCHELYRDMEDEACHGE 1176 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 L +L+G +D F L+DYK++++ + Sbjct: 1177 TL--------------LLQGVVDCYFEEPDGIVLVDYKTDYVAPGNV---------ETIR 1213 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 RY +Q Y AL ++ + IYLF Sbjct: 1214 ERYKVQILYYARALEMLTGKKVKEK--------YIYLF 1243 >UniRef50_B0VLS1 Exonuclease V, beta chain n=13 Tax=Acinetobacter RepID=B0VLS1_ACIBS Length = 1232 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 295/1276 (23%), Positives = 510/1276 (39%), Gaps = 143/1276 (11%) Query: 1 MSDVAE-TLDPL-RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEE 58 M+ + + P+ + G LIEASAGTGKT+T+++L +R+ L Sbjct: 1 MNSRVQVSYQPIIDIEFSGLHLIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRA 60 Query: 59 LLVVTFTEAATAELRGRIRSNIHELRIACLR-------------ETTDNPLYERLLEEID 105 AEL+ RIR+ + E E + L + +L+ Sbjct: 61 A---------AAELKSRIRARLVETHRYLDAKRSLTEKEILLQAEQESDLLLQHILKHFA 111 Query: 106 DK-AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQAC 164 + A A + L L Q+DE V T+ F Q++L AFESG + Q+ +D Q Sbjct: 112 TRIAYACERLKLVIDQLDELFVGTLDSFSQKLLREFAFESGKIERAQITDDAKTYSRQLI 171 Query: 165 ADFWRRHCYPLPREIAQVVFET--WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRH 222 D R P+ + ++ K + ++ + L + K P Sbjct: 172 HDVLREWIQSQPQTVIDALYLAGELKSVDSFVKLVEDSLNFSSAHFKLPEKPTIQFEQLA 231 Query: 223 A--QIVARID-TVKQQWRDAVGELDALIESSGIDRRKFNR------SNQAKWIDKISAWA 273 Q+ A ID ++ + + G+ + + FN+ + + + + Sbjct: 232 QLKQLAAEIDISLLEPYYSLDGDHYKHVSGTIFRNGAFNKLFSECLPQLLQVLKQSDSIL 291 Query: 274 EEETNSYQLPESLEKFSQRFLEDRTKAGGET------PRHPLFEAIDQLL-------AEP 320 + + E + KF + + + +HP + I QL + Sbjct: 292 VFDGSLAVQRELVFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQLFGVLKNYAEQF 351 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPV 380 + + E+++ + + + +GE F + L AL+ E G+ A ++ R+P+ Sbjct: 352 DQLHIYLKAYFCVEVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPL 411 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEV 437 ++DEFQDT+ Q + IW H ++++GD KQAIY FRG D+ T++ A ++ Sbjct: 412 ILVDEFQDTNQDQDDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDI 471 Query: 438 HAH----YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 A Y L N RS +V V+ LF + D ++ + P+++ + + Sbjct: 472 QAKHGREYKLIHNHRSVADLVEVVDALFQRQID--FGEQVQYDPIRAGTRPHPVLIDQNQ 529 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 ++ +++ + T AQ A +IRD L G+ + + D Sbjct: 530 PNPHPLRWLMLKDK--------ETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDD 581 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I+VL R+ +V+ L L I V ++ SVF+ AQ++ LL A+ P E ++ Sbjct: 582 IAVLSRNHDGLDKVQFELERLGIR-VNRPSKRSVFDCTIAQDVGALLTAIFHPYDEAKVK 640 Query: 614 SALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 AL + + ++ + L + FD R++W +G + + ++ I +N Sbjct: 641 RALISRLFAMDLKQLLQLEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKN 700 Query: 674 LLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 L+A + ER + ++ H++E+L + + + L W + + P + RL S Sbjct: 701 LVAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSS 760 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV---- 787 + VQ++TIH+SKGLE+ +V+L + + V + Sbjct: 761 EAG-VQLMTIHQSKGLEFKIVFLLGADTPFRENNKTLNFSTQDITVSESAQTLTQRVVAI 819 Query: 788 -----------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 E LAE RL YVALTR+ A L G S Sbjct: 820 ADKTYLNETELKQHEERALAEQNRLWYVALTRASHRVY---ALLQDTDGKS-------VS 869 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 L + EP I + ++ E+ A+ Sbjct: 870 GLAFWKNRAEPFQHRCCTDEI-----------ILEQPPAARHLNQHINIIEIQAQHFPDQ 918 Query: 897 PGDNWRVTSYSGLQQRGHG-------IAQDLMPRLDVDAAGVASVVEEPTLTP-----HQ 944 + TS+S L Q +Q L D VE T P Sbjct: 919 RFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLAEDELDQVISVETATAQPISWIKSN 978 Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEP---------------- 988 FPRG G FLH +FE +DF + + + S W+ Sbjct: 979 FPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAE 1038 Query: 989 -----VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 + EW+ +L PL + G L+QL + E FYL +S+ ++A + + + F Sbjct: 1039 YSLYHAVAEWLQEILSTPLYQ-GFRLNQLQPEHYLSECPFYLALSDRVLA--MKRIQQLF 1095 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 P L + L G IDLV+ RY++ DYKSN+LGE+ + Y+ +++A +M Sbjct: 1096 AEYGMEMPELLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGENLADYSVESIAQSMA 1155 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 Y LQ LY +ALHRYL+ ++ +YD E H GG YL+LRG++ E +QG Y +P+ Sbjct: 1156 LASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYLYLRGMNGE-AEQGYYYWQPSTE 1214 Query: 1164 LIALMDEMFAGMTLEE 1179 + +D + ++ Sbjct: 1215 FVLRLDAILGYFAEDK 1230 >UniRef50_Q6FF16 Exonuclease V, beta chain n=2 Tax=Acinetobacter RepID=Q6FF16_ACIAD Length = 1234 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 299/1279 (23%), Positives = 515/1279 (40%), Gaps = 147/1279 (11%) Query: 1 MSDVAETLDPLR-LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + P+ + G LIEASAGTGKT+T+++L +R+ L +++ Sbjct: 1 MTKSKVSYQPITEIEFSGLHLIEASAGTGKTYTLSSLMVRIFLEKYL---------PQQV 51 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACL-------------RETTDNPLYERLLEEIDD 106 + TFT AA AEL+ RIRS +H+ + +PL E LL++ Sbjct: 52 IATTFTRAAAAELKARIRSRLHQTLTYLQECRGLTESEILQKAQQETDPLLEYLLQQFSL 111 Query: 107 K-AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACA 165 + A + L L Q+DE V T+ F Q++L AFESG + + +D Q Sbjct: 112 RIGYACERLKLVLDQLDELFVGTLDSFSQKLLREFAFESGKIERADITDDAKAYTRQLIH 171 Query: 166 DFWRRHCYPLPREIAQVVFE--TWKGPQALLRDINRYLQGEAPVIKAP--PPDDETLASR 221 D R P+ + ++ K A + + L + + P D + Sbjct: 172 DVLRAWIQAQPQALIDGLYNMGALKSVDAFVGLVESSLNFSSAKFQQQQSPEIDLYALEQ 231 Query: 222 HAQIVARID-TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 A + +ID T + GE + I S F+ + A ++ S Sbjct: 232 VAALACQIDVTPLSSYYQLDGEYYSFIHGSSFRNHGFHALFVQHIPCLLKALQQDSVLSI 291 Query: 281 QLP------ESLEKFSQRFLEDRTKAGGETP-------------RHPLFEAIDQLLAEPL 321 P E+ +KF ++ +++ + + + A+ Sbjct: 292 FDPAFKASREAADKFIEKLEQEKIFKKCPADVSDGFYQHAVVAQLKQVIQTLQHYQAQFE 351 Query: 322 SIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA 381 + + E+++ + + + +GE F +S L AL+ E G+ A ++ R+P+ Sbjct: 352 QLDHALKAYLCIEVKQRLPQVLQEKGETTFSQQISTLAEALKGEQGQRFAIFVQARYPLI 411 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEV- 437 ++DEFQDT+ Q + IW H ++++GD KQAIY FRG D+ T++ A ++ Sbjct: 412 LVDEFQDTNQDQDDMLASIWRHPQRYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYQDIL 471 Query: 438 ---HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 Y L N RS +V V+ LF + ++ + P+++ + Sbjct: 472 HKQGREYKLSQNHRSVKPLVEVVDALFQR--QPNFGEQVIYDPIQAGSRAHPALMDRAQV 529 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 ++ +++ + ++ A+ A +IR L GE L +G + A DI Sbjct: 530 NTAPLRWIMLQDK--------ASEAEQVAWKIRALLNQASSGELYLKDGSVHHSIIADDI 581 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 +VL ++ + V+ AL L I V +R SVF+ + A ++ L A++ P E ++ Sbjct: 582 AVLSKNHKGLDDVQAALEYLNIK-VNRPSRRSVFDHVVAHDVGAFLTAILFPYDEAKVKR 640 Query: 615 ALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 AL + +MG + + L + + DG R+IW +G +P + ++ + +NL Sbjct: 641 ALLSRLMGFDLERLYQLEQSPVGLSDYMNQLDGLREIWLHQGFLPAWQRGLNIFQVWQNL 700 Query: 675 LATA--GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 A ER + ++ H+SELL + Q + L W + + P + +L SD Sbjct: 701 GAKHSRENERAVVNLRHLSELLSKHSEQYQGAQNLYHWYLKQLRSPSEREWELERKLSSD 760 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN----------- 781 VQ++TIH+SKGLE+ +V+L + + + Sbjct: 761 AG-VQLMTIHQSKGLEFKIVFLLGADKPLRDQNKDLNFSRAEILDESTGQMQTKRVIAIA 819 Query: 782 ----AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 PE++ AE R+ YVALTR+ A Sbjct: 820 DKTQLTPEAIIQHTERATAEQNRIWYVALTRASHRVY----------------------A 857 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRL 896 + Q+ A + + + +P V++ L A L + Sbjct: 858 MLHDPQQKSKDALAFWKNQDSPFLHEYSIEEALLMQCPEPLTVHETPQKILIYAAPLPQQ 917 Query: 897 PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTP-------------- 942 TS+S L Q + + + E T T Sbjct: 918 RFYPRGKTSFSYLAQHLKPRVSYADTLVSMQTRPEQAEDERDTTTSIQYSQAAIQPIAWI 977 Query: 943 -HQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKL--------------------ELG 980 FP+G G FLH +FE ++F Q + +R + EL Sbjct: 978 KQNFPKGTLAGNFLHEIFEHINFNQTEEWITEIRRRFKNDYGSLWEMLYPVYIDAFPELN 1037 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 G E++ L +W+ VL+ PL++ L QL + E FYL +S+ ++A + + Sbjct: 1038 GDENRLYQWLADWLDDVLKTPLHQD-FQLKQLQSGQFLSECPFYLALSDRVLA--MRRIQ 1094 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 + F P L G IDL++ R+++ DYKSN+LG D + Y A+ Sbjct: 1095 QLFIEYHIEMPEFLDAYSARYLNGSIDLMYFDGQRFHIADYKSNFLGTDQTHYDGLAIRE 1154 Query: 1101 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRP 1160 M Y LQ LY +ALHRYL+ ++ Y+ H GG YL+LRG++ H QG Y +P Sbjct: 1155 NMTHSSYWLQAALYLVALHRYLKVKLEHYEIAEHLGGATYLYLRGMNG-HTGQGYYYWKP 1213 Query: 1161 NAGLIALMDEMFAGMTLEE 1179 I +D + T ++ Sbjct: 1214 EDEFILRLDAILGYATEDK 1232 >UniRef50_Q05XZ6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ6_9SYNE Length = 1222 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 324/1268 (25%), Positives = 497/1268 (39%), Gaps = 159/1268 (12%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 +P + PL+ G RL+EASAGTGKTF +A L LRLL P PL VE+LLVVTFTE Sbjct: 6 FEPNQFPLEPGLRLLEASAGTGKTFALAHLVLRLLSEG------PNPLQVEQLLVVTFTE 59 Query: 67 AATAELRGRIRSNIHELRI---ACLRETTDNPLYERLLEEIDDKAQAAQ-WLLLAERQMD 122 AA AELR RI + + + D PL E + + + + LLLA ++D Sbjct: 60 AAAAELRDRIARRLQQALALLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERLD 119 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 A + TIHGFC+R L A E+G+ L R Q D+W++H L ++ Sbjct: 120 RADITTIHGFCRRTLQRQALEAGLGPAVSLESQGHDRREQLVHDYWQQHVLLLSPQLLAG 179 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET----LASRHAQIVARIDTVKQQWRD 238 + + P L+ + A + A P ++ A +R W Sbjct: 180 LQQRGIHPDGLISVLANLDGDPALQLDALPDAQDSDLPLAAQLEDAWTSRWQRFLTLWES 239 Query: 239 AVGELDALIESSGIDRRK-------FNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 + L+ + ++ + + + + + K+ +W + + P +Q Sbjct: 240 SADALEHDLAAAAAELKSLALPYSPYRLKPKPDRLQKVQSWIDSLEG--RTPGYDAVLAQ 297 Query: 292 RFLEDRTKAG----------GETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAR 341 L+ G G+ P E + + + ++ R+ + R Sbjct: 298 AELQKYFHPGPFTKVAAAAHGDRVSLPQAELLRAIADLVDGPAEAMLLHFGHWGRQELTR 357 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 + R G++ F +L +LD + L AI R+ A+IDEFQDTDP Q+RI R Sbjct: 358 RRERSGQMSFGQLLEQLDPGAGDDGATSPLLQAIGQRYRAALIDEFQDTDPIQWRILERA 417 Query: 401 WHHQPETALL-LIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNK 459 + P LL ++GDPKQAIY FRG ++ TY A S+ Y L N RS+ +V ++N Sbjct: 418 FTGDPPQHLLVMVGDPKQAIYRFRGGELATYRLAASKTEQCYGLYENRRSSEPLVRALNA 477 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMA 519 L P P+ G+ P + L Sbjct: 478 LMQPGLQRSELPVPPVEPMADKGE-----LAMPDGQSPLQLLNLDPHHLDS--------- 523 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 A + LQ + L + +R + D+ +LV +A +R AL +PS Sbjct: 524 -QVATFCQQLLQE----QWPLRSERGSRVLEPGDLCLLVSQHSQAEALRSALERHHLPSR 578 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 +S D VFE+L A + L A+ P R + ++G +A DI+ N WD Sbjct: 579 LVSKGD-VFESLGAAALQRFLDALALPGHNGRQRLLAGSPLLGWSAADIQ--NAQPQDWD 635 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 + + +G+ +L L + +A L R L D+ +EL+QE Sbjct: 636 QLAAALSNLAERLPHQGLTAVLAQLQGSEGLARLSLRG----RTLADLQQAAELVQEQMH 691 Query: 700 QLE-SEHALVRWLSQHILEPDSNASSQQM-RLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757 +L WL + L+ + + R ++ + + +VT+H+SKGLEYP+V PF+ Sbjct: 692 KLGLGTLQAADWLRRQRLQDHGESPEAHLCRSDAAESAIAVVTVHRSKGLEYPVVICPFL 751 Query: 758 TNFR-------VQEQAFYHDRHSFEAVLDLNAAPE--------SVDLAEAERLAEDLRLL 802 Q + + LDL+ P D AE RL Sbjct: 752 WKGSKAIKAGARQLGRRWMRSPEADPHLDLHLNPHWGQGRLAAQQDQRAQAAEAE--RLA 809 Query: 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 YVA TR+ LG + + L L +G + L C + Sbjct: 810 YVACTRARHLLVLGWPGVDLAEP---------ANPLSPWLVEGGLERDLPLHRCETRASN 860 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP 922 +PWQ + T R W SYS + ++ Sbjct: 861 T-----------IKPWQPEPPQGSLALGPTPSRPLDSRWGRASYSAWAHSQVAVPPEMRE 909 Query: 923 R-LDVDAAGVASVVEEPTLTP--------------------HQFPRGASPGTFLHSLFED 961 D DA + +E P +FPRGA PG LH + E Sbjct: 910 DGRDTDAINLEPALEHTASIPNDGITPLSEKQTSWPELGPLAEFPRGAGPGDALHRILER 969 Query: 962 LDFT------QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLS 1013 +D+ V E+L G +W L ++ ++ P+ L L Sbjct: 970 IDYGTLAAGDDAQARVVVAEELPRAGLSLEWADTLMSGLSQLMHTPMGGALGACRLGDLR 1029 Query: 1014 ARNKQVEMEFYLPISEP-----LIASQLDTLIRQFD-----PLSAGCPPLEFMQVRGMLK 1063 + EM F LP++ + +S L + L + RG L Sbjct: 1030 KGDWLNEMNFDLPLAHTQPDHLVRSSGLAKVFNAHPGGLFNEGYGQQLNLLDVASRGFLT 1089 Query: 1064 GFIDLVFRHEGRYYLLDYKSNWLGED----------SSAYTQQAMAAAMQAHRYDLQYQL 1113 G IDLVF EG +++ D+KSNWLG+ + YTQ+AMA M ++ Y LQ L Sbjct: 1090 GSIDLVFCWEGTWWVADWKSNWLGQRDGQGTVQQCGPANYTQEAMAELMVSNHYPLQAHL 1149 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ---------QGIYTTRPNAGL 1164 Y +ALHRYL R+ Y E H GG Y+FLRGV Q G+ +P+ Sbjct: 1150 YLVALHRYLHWRLPGYTPELHLGGYAYVFLRGVPGALAQDRPKHKTATPGVLVDQPSLER 1209 Query: 1165 IALMDEMF 1172 + +D + Sbjct: 1210 VLALDALL 1217 >UniRef50_UPI0000E0F57F exodeoxyribonuclease V, beta subunit n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F57F Length = 1222 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 326/1244 (26%), Positives = 529/1244 (42%), Gaps = 114/1244 (9%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 V L+ + L L LIEASAGTGKTF I + +++LL + +++ +LL+VT Sbjct: 7 VFSPLNVITLTLAQRHLIEASAGTGKTFNITRIAVKVLL--------VKQISITQLLIVT 58 Query: 64 FTEAATAELRGRIRSNIHELRIACLR-ETTDNPLYERLLEEID--DKAQAAQWLLLAERQ 120 FT+AAT EL+ RI + + E + + +PL L+ + +A L A + Sbjct: 59 FTKAATQELKARIAATLQEFLTMLDQPQEQWDPLLRDLIIDNAVVTPDKARLILRQAILE 118 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 MDEAA+FTI+ FC RML ++F + FEQ +I+D + A D + + Sbjct: 119 MDEAAIFTINSFCGRMLTQSSFLTHRPFEQTIIDDSQSIYITAIHD---QFLALQNKVAY 175 Query: 181 QVVFETWK--GPQALLRDINRYLQGEAPVIKAPP-PDDETLASRHAQIVARIDTVKQQWR 237 + + P+ + L PV DE + I + + ++ + Sbjct: 176 REALSAFGVETPEDFFATYHNVLLNNLPVEYPNETNIDELIQQSFQPIFSSLKVLRSECC 235 Query: 238 DAVGELDALIESSGIDRR---KFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 + + I++ + +W+D + +E + + Sbjct: 236 LILSQYINEIKTLYETNYAKVSMDVDIVLRWLDADVYFDDEGFVKSFFHGIRIRGYAKHF 295 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRD--------LVITRALAEIRETVAREKRRR 346 + KA T E+ Q I + +I L +I+ + +K+R+ Sbjct: 296 DTANKAHYLTVLQAFNESWKQAEKIKKKIAEVQHKLPHYSLIATLLNDIKTQASNDKQRQ 355 Query: 347 GELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ-P 405 G L D + L + S E L A IR ++P+A+IDEFQDTD +QY IF +++ + Sbjct: 356 GVLDHSDTIHLLYQEIMS-GNEQLIAYIRQQYPIALIDEFQDTDAEQYSIFHQVYPPKNK 414 Query: 406 ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQT- 464 E LL+IGDPKQAIY FRG D+FTY+ A + H+++DTN+RS P ++N N LF Sbjct: 415 ELMLLMIGDPKQAIYGFRGGDVFTYLNAVKDACFHWSMDTNYRSTPSVINGYNTLFYGLD 474 Query: 465 ---------------------------DDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 + I + + + +A K E Sbjct: 475 ITQSKLSSMTSWATSLSDAPNTEPPVPEKELFDYHIQYNWILATSLAKANNTPLKDECSD 534 Query: 498 AMKMWL----MEGESCGVGDYQSTMAQ-----VCAAQIRDWLQAGQRGEALLMNGDDARP 548 A + EG AQ A +I+ L + G+ R Sbjct: 535 AGTHFFHYQMQEGNELQPAMLDKISAQILMSKWVANEIQRLLTSVTLGD---------RL 585 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 V+ +DI++LV R + ++ + SV LSNR+S+F + +A + L ++ + Sbjct: 586 VQPADIAILVNKRAQGDLIKRVFAQCGLNSVILSNRNSIFTSQQATNLYRFLHGLLNFNQ 645 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSAR 668 E ++ LAT +MG D+ L++ + W+ G++ ML ++ R Sbjct: 646 ERPFKTMLATDLMGCQPEDLYALDSRPDDIEQYKLAAHQLLHKWQDEGILVMLTHVLKTR 705 Query: 669 NIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMR 728 ER +T+ + +++LL E +L + + + A R Sbjct: 706 --FTLYGDCLDAERIMTNYMQLADLLNEFERTNPLPSMTASFLYEKLAAGN-EADEYYQR 762 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVD 788 LESD L++IVTIH SKGLEYP+V++PF + + + F D NA + Sbjct: 763 LESDSELIKIVTIHGSKGLEYPIVFVPF---DSFGNRDLINSKAKFTTFYDTNAQEKRHF 819 Query: 789 LAE---------AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 LA + E LRLLYVA+TR+ C LG + +A+ Sbjct: 820 LARLPVKDAIQIEQAQREALRLLYVAITRAAHRCYLGYQSIHYADN----------TAIH 869 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW---QVNDVSTAELNAKTLQRL 896 +L K + +EAL D + + T + + +L A T Sbjct: 870 HMLAKVADTHDYSVIEYMEALAGADSSLFASHTIPDNLHLSMYSKLSNQPDLKALTYTGP 929 Query: 897 PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP--RGASPGTF 954 WR+ SYS + R I + D A S ++ P +F +GA+ G Sbjct: 930 TQSQWRIYSYSSIVNRTKEIDLNAKTHSDDHAKSDRSSDKQDDTLPLRFTLTKGANAGQL 989 Query: 955 LHSLFEDLDFTQPVDPNWVREKLELGGFE-SQWEPVLTEWITAVLQAPL----NETGVSL 1009 LH++ E DFT+ +D + ++ + + W+ VL P+ +++ L Sbjct: 990 LHNVLEHSDFTEALDNTLIEQECLKFLPDHQNDIDAIASWLDEVLSTPIYHAHSDSNFML 1049 Query: 1010 SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLV 1069 QL N E +FY P+ + IAS L Q P L + GM++GFIDL+ Sbjct: 1050 KQLPKANTLREPQFYFPLGDTSIASLGKLL--QHHRDENTLPNLATDMLEGMMQGFIDLI 1107 Query: 1070 FRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY 1129 F G+Y++ DYKS LG YT A+ A +Q+ +YDLQY +Y LH +L + DY Sbjct: 1108 FEVNGQYFVCDYKSTHLGNGFEGYTPDALLADIQSKQYDLQYLIYVWVLHLHLSLVLPDY 1167 Query: 1130 DYEHHFGGVIYLFLRGVDKEHPQ-QGIYTTRPNAGLIALMDEMF 1172 + H GGV YL+LRG+ + P GIY + + + + F Sbjct: 1168 EPSRHLGGVYYLYLRGMSPQAPAHSGIYFKPISMTDLQYLAQTF 1211 >UniRef50_Q3AX66 DNA helicase/exodeoxyribonuclease V, beta subunit n=4 Tax=Synechococcus RepID=Q3AX66_SYNS9 Length = 1208 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 300/1248 (24%), Positives = 479/1248 (38%), Gaps = 122/1248 (9%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 +AE D PL+ G RL+EASAGTGKTF +A L LRL+ +E LLVV Sbjct: 1 MAERFDANTYPLKPGIRLLEASAGTGKTFALAHLTLRLIT--------EAAYPLEALLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTD------NPLYERLLEEI---DDKAQAAQW 113 T+TEAA ELR RI + + + + + +P+ E+ D+ + Sbjct: 53 TYTEAAAEELRSRIGQRLQQALVGLEQLENEMFPSAPDPVMAAWWEQCTASADRRIRIRR 112 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCY 173 LL+A Q+D A + TIHGFC+R L A ++G E QL D + L+ + W++ Sbjct: 113 LLVALEQLDRADIATIHGFCRRSLRRLALDNGAAIEPQLESDAAALQAEVVQYLWQQELL 172 Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 LP E Q + + PQ + R P + + + Q+ I+++ Sbjct: 173 TLPDEQLQGLRQRGLSPQTFGAALARLDGDPNPRLAGDSTSVDRQSPLRDQLPCWIESLW 232 Query: 234 QQWRDAVGELDALIESSGIDRRKFNR------------SNQAKWIDKISAWAEEETNSYQ 281 ++ A +ES + + I+ W + Sbjct: 233 HAFQSHWESDHAALESGFRAAAAQWKSQGCGSTSPYSAKPRTDRCAVINQWIAIQNGVPS 292 Query: 282 LPESLEKFSQ--------RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA 333 L + K G + P + A + V L Sbjct: 293 LAAIASVEKPLKEYFHPGSWCRMARKCGEDEPSLVASALQSAIGALWDEPLERVWRYLLE 352 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 E + + RRG + F +L+ +D + LA ++ R+ M+DEFQDTDP Q Sbjct: 353 RGLEELRERRGRRGAITFAGLLAAMDP--GDGQVDWLA-PLQERYRAVMVDEFQDTDPVQ 409 Query: 394 YRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGM 453 +R+ RR + + LLL+GDPKQAIY FRG D+ TY++AR +V L N+R+ + Sbjct: 410 WRLLRRAFGDRIHHLLLLVGDPKQAIYRFRGGDLGTYLEARQQVDRIDHLLDNFRATASL 469 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD 513 ++ +N L + EIP + ++ + T + L Sbjct: 470 MDGLNTLMAPGM-PRSHLEIPAVRAQAVDQ-------VSPTTAALQLLELELDTPASRTA 521 Query: 514 YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 + + Q AA + + L+ + + SD+ VLV Q+A +R AL Sbjct: 522 LEQQLPQHLAAVVFEILEGPDQPD-------------PSDLCVLVSRHQQATDLRRALGA 568 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 IPS ++ D V E+ A + LL A+ P + LR +++ +M + + Sbjct: 569 AGIPSRLVTQGD-VLESEAALVVQRLLDALADPGDDRCLRLLVSSPLMNWSLEAM----E 623 Query: 634 DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 +E D + E+ + + K G+M L L+ + + R L D+ + L Sbjct: 624 NEGGLDQLAEQLRLWERALPKLGLMGCLAQLLEG----QRTADLSERGRMLGDLQQVGRL 679 Query: 694 LQEAGT-QLESEHALVRWLSQHILEPDS-NASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 +QEA Q WL + L P + ++Q + V +VT+H+SKGLEYP+ Sbjct: 680 VQEAMHRQGLDSATAANWLRRERLHPTTPVPEARQPHSDQADQAVAVVTVHRSKGLEYPV 739 Query: 752 VWLPFITNFRVQEQAFYHDRHSFE-----AVLDLNAAPESVDLAEAERLAEDLRLLYVAL 806 V P++ QE + A + +AE RL YVA+ Sbjct: 740 VICPYLWQAPRQESGPLWRETGDGRWFIAIDSHWGKGHRAAQQATDDAMAEAERLAYVAM 799 Query: 807 TRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA 866 TR+ + + G A+ + + E Sbjct: 800 TRARSQLMVVWVRSTGQEGAPLPCWLFGADAIHDSVDQFNDDRLD--LALSERGVSLLRR 857 Query: 867 WQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL---MPR 923 +Q W+ +T R +W SYS P Sbjct: 858 VLPDPLLPSQRWRSLPSEQPLGLGETPGR-IDRSWGRASYSAWISAPVDPVVHEQGRDPD 916 Query: 924 LDVDAAGVASVVEEPTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVDPN----------W 972 + + P P FPRGA G LH + E + + + Sbjct: 917 PGAEECSLTGPELWPEQGPLADFPRGAVAGDCLHRILEQIPYQAADADDPSLLDSLRAAV 976 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEP 1030 + +L G + + ++ E + VL+ PL + LSQL + + E+ F LP+ Sbjct: 977 IDSELRRAGLDCNLQSMVMEGLGYVLKTPLGGPLEQLQLSQLGLKQRIHELSFDLPVGHV 1036 Query: 1031 LIASQLDTLI----RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR--HEGRYYLLDYKSN 1084 + +F + RG L G IDLVF H+ R+++LD+KSN Sbjct: 1037 RTKDLVQAFHCSPNARFGGRYIDHLATLGVNSRGFLTGSIDLVFCDPHQSRWWVLDWKSN 1096 Query: 1085 WLGED----------SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHH 1134 W+GE Y Q AM M H Y LQ LY +ALHR+L R+ DY+ E H Sbjct: 1097 WIGERRSEGSPGRCGPRHYHQDAMQEQMIHHHYPLQAHLYLVALHRHLSWRLPDYNPEQH 1156 Query: 1135 FGGVIYLFLRGVDKEH---------PQQGIYTTRPNAGLIALMDEMFA 1173 GG +Y+FLRG+ + G + +D + Sbjct: 1157 LGGYVYVFLRGMPGDQLVSLEDSASVGPGRLVEPAPLERVLALDRALS 1204 >UniRef50_Q0IBA6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Synechococcus RepID=Q0IBA6_SYNS3 Length = 1212 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 317/1267 (25%), Positives = 496/1267 (39%), Gaps = 149/1267 (11%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 ++ P PL G RL+EASAGTGKTF +A L LRL+ R L ++ELLVV Sbjct: 1 MSSRFQPNHYPLDAGIRLLEASAGTGKTFALAHLVLRLVT--------ERKLNLKELLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRE------------TTDNPLYERLLEEIDDKAQA 110 TFTE+A AELR RI +++ A L+ TD + E L+ D Sbjct: 53 TFTESAAAELRDRIGRRLNDALQALLQNQTNNSNSQTDSSPTDAVMEEWLILHGQDPNTR 112 Query: 111 AQW---LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADF 167 LL A ++ A + TIHGFC+R L A ++G E L D L + D+ Sbjct: 113 RTIASNLLEALEGLERADITTIHGFCRRSLRRQALQNGTAMEVCLENDSQHLSQEVAYDY 172 Query: 168 WRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDET----LASRHA 223 W LP + L ++R A I D + Sbjct: 173 WEHQVLALPASDVSGLLHAGLSADQLSHALSRLDSDCAVRIAGTEGSDHLEGPLIECFDQ 232 Query: 224 QIVARIDTVKQQWRDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWAEE 275 + + + +W L+ D R ++ + +++SAW + Sbjct: 233 WLQSSWTAFEAEWNTNGRTLETAFRDCATDWRSQGQTDTKPYSPKPKKDRANELSAWISQ 292 Query: 276 ETNSYQLPESLEKFS-QRFLEDRTKAGGETPRHPLFEAI----------DQLLAEPLSIR 324 + ++ S Q L D G + I + A Sbjct: 293 QNSTQPFRISYGDVRNQSLLGDYFHPGCFSKTARRCNEIHPNLPQPTLQKAIAALWDGPA 352 Query: 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMID 384 + V AL +T+A + ++G + F +L LD + I+ R+ VA+ID Sbjct: 353 EKVWRHALTHGLQTLAARRAQQGVISFSGLLDALDPQATDAEPKRWLVPIQRRYRVALID 412 Query: 385 EFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLD 444 EFQDTDP Q+R+ + + P LL++GDPKQAIY FRG D+ TY +AR + L Sbjct: 413 EFQDTDPLQWRLLQACFA-TPNHLLLMVGDPKQAIYRFRGGDLNTYKQARQQADQIDNLL 471 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N R+ P ++ ++N+ + P +A L QP + L Sbjct: 472 DNRRTTPSLMEAMNQWMAPGLKRSKLEVPRVTPCATA-----LPLELPDGEQPLQLIDLQ 526 Query: 505 EGESCGVGDYQSTMAQ---VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 +S + + + A Q L + + SD+ VLV Sbjct: 527 ADDSDSPPTRTALESTIPPLVACQALHLLDSDPS-------------LTPSDLCVLVSRH 573 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 ++A VR+ L +PS +S D V T A E+ LL A+ TP LR +++M Sbjct: 574 RQAEAVREQLAQRGLPSRLVSPGD-VLSTTGAAELQHLLDALTTPADGGRLRRLACSALM 632 Query: 622 GLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 + ++ + D + + + G++ L L+ R +A+ + Sbjct: 633 QWTSHQLQDAETNGDL-DRLAGQLRNLQDDLPFLGLLGCLSQLLEGRMLAD----LSSRG 687 Query: 682 RRLTDILHISELLQEAGT-QLESEHALVRWLSQHILEP-DSNASSQQMRLESDKHLVQIV 739 R L DI + L+Q+A Q + WL + L+P + ++Q + + V +V Sbjct: 688 RLLGDIQQCARLVQDAMHRQGLDLGSAADWLRRQRLQPIEPTPDNRQPHSDLAESAVAVV 747 Query: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYH--DRHSFEAVLDLNAAPE------SVDLAE 791 T+H+SKGL+YP+V P++ + + E + P + + + Sbjct: 748 TVHRSKGLQYPVVICPYLWQAPADGKGPLWRNPPNDPEGTWQVALNPHWGHGHKAAERNQ 807 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA 851 + AE RL YVALTR+ H + + D + + + L + +P + Sbjct: 808 DDSAAEAERLAYVALTRAERHLVVFWVAAAGQ------DANPLANWVKELSMRDKPLASR 861 Query: 852 GLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL-- 909 L L W+ + QR +W +SYS Sbjct: 862 HLPPETTTLPF---------------WRPAPRIETLQLSDVPQRTLDRSWGRSSYSAWIS 906 Query: 910 QQRGHGIAQDLMPR-----------LDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSL 958 Q GH PR D +A + + FP+G G LH + Sbjct: 907 TQNGHHKPAPADPRNLEEGRDIDAVADTEAPESPANTADQNGPLADFPKGPGAGDCLHRI 966 Query: 959 FEDLDFTQPVDPN----WVREKLELGGFESQWEPVLTEWITAVLQAPLNET--GVSLSQL 1012 E + F P D V E++ G + ++ + + VL+APL + LS L Sbjct: 967 LEQVSFQGPADQAPNQAVVAEEIGRAGIDLEYCDAVITALNTVLKAPLGGPLKDLKLSDL 1026 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV--------RGMLKG 1064 SA + E+ F LP+++ L F+ S + Q RG L G Sbjct: 1027 SAGRRLHELSFDLPVAQRGKPVNSAGLAHAFEADSDHRFGQHYAQSLRQLDIRSRGFLTG 1086 Query: 1065 FIDLVFRHEG-----RYYLLDYKSNWLGED----------SSAYTQQAMAAAMQAHRYDL 1109 IDLVF R+++ D+KSNW+GE Y+Q AM M +H Y L Sbjct: 1087 SIDLVFTDGENPATARWWVADWKSNWIGERDDSGRGVACGPRHYSQAAMEEQMLSHHYPL 1146 Query: 1110 QYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMD 1169 Q LY LAL RYLR R+ YD E H GG Y+FLRG++ E G+ I +D Sbjct: 1147 QAHLYLLALDRYLRWRLDGYDPERHLGGYAYVFLRGINPEG-GSGVVIEPAPLKRIRRLD 1205 Query: 1170 EMFAGMT 1176 + G++ Sbjct: 1206 QWLEGLS 1212 >UniRef50_A9BB02 Possible UvrD/REP helicase subunit B n=2 Tax=Prochlorococcus marinus RepID=A9BB02_PROM4 Length = 1265 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 280/1295 (21%), Positives = 517/1295 (39%), Gaps = 153/1295 (11%) Query: 2 SDVAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 + +P PL+ G RLIEASAGTGKTF++A L LRLL + ++ E+L Sbjct: 1 MGIESEFNPNTFPLEPGVRLIEASAGTGKTFSLAHLVLRLLT--------EKQHSINEIL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIAC-------LRETTDNPLYERLLEEIDDKAQAAQW 113 VV+FT A+ AE++ RI + + + D L E L + I+D + W Sbjct: 53 VVSFTRASAAEIKARITNRLIFALKGLENPSKEYKNKHIDQVLDEWLKKFINDIQRRMHW 112 Query: 114 ---LLLAERQMDEAAVFTIHGFCQRMLNLNAFESG--MLFEQQLIEDESLLRYQACADFW 168 LL A +D+A + TIHGFC+R L + ESG + + L + ++W Sbjct: 113 VNHLLDALTNIDQADITTIHGFCRRTLQRDVIESGSAIEPHPIAEGEIKKLVNEIAHEYW 172 Query: 169 RRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR 228 ++ L + + + + +++ + + Q + + + + Q Sbjct: 173 IQNVLSLAPQHLKGIKQAGINAESIAKKVLAIDQDPSLKLSIKRTEVDVSKPLKEQFNTN 232 Query: 229 IDTVKQQ----WRDAVGELDALIESSG--------IDRRKFNRSNQAKWIDKISAWA--- 273 + T + W + +LD ++ +D + ++ + + +++ W Sbjct: 233 LKTCWESFISSWEEYGSDLDNELKKIASSYREIGIVDTKPYSPNPRKNRYQELNEWINIF 292 Query: 274 ---------------EEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHP-LFEAIDQLL 317 E+ L + +E R + + P L +AI L Sbjct: 293 KCSQYGSKKSKPISYEDIRTQKLLKDYFHPLKLAEVERRNQLDYSSLIRPKLQQAIADLF 352 Query: 318 AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG-------EVL 370 +LV A+ + E++ ++ + G + F D L AL ES L Sbjct: 353 D---KPAELVFIHAVGSVLESLRLKRLKSGFISFSDQL----KALDPESNCSVKNNFPKL 405 Query: 371 AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY 430 +R R+ V +IDEFQDTDP Q+RIF ++ + L+++GDPKQAIY FRG D+ TY Sbjct: 406 QERLRQRYKVILIDEFQDTDPLQWRIFNTVFGKSSKHLLVMVGDPKQAIYKFRGGDLNTY 465 Query: 431 MKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV 490 + AR E +L TN+R++ +++S+N++ S + + +KS K + L Sbjct: 466 LLARKEADRVDSLLTNFRASAPLLSSLNQMMSC---GLKYSALNVPSLKSGSKRKLLPLS 522 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 + + + ++ + ++ ++ + L + + Sbjct: 523 TESHS-----LEILTPKPSSSEKVLNSSVPPLRNKVEQLIPNIVTNAILELINKPDSELH 577 Query: 551 ASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 +DI +LV +A +R +L+ IPS ++ D +FE+ A + + + +P + Sbjct: 578 PNDICILVNRHSQANDIRLSLSKSGIPSRLINKGD-IFESEAATILQRFIDCLSSPNSID 636 Query: 611 TLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNI 670 +R + +M + ++ + D ++ +F + + G++ L + ++NI Sbjct: 637 NIRLLACSPLMQWDINKLKD-AEETKEIDDLIIQFTNWGNELNELGLIGCLSNFLESKNI 695 Query: 671 AENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILE-PDSNASSQQMR 728 A L+ G L D+ ++L+QEA Q + RWL Q + D +Q Sbjct: 696 AS--LSRKGTL--LGDLFQCAQLVQEAVHNQGLNARGAARWLKQQRTKLLDPTPEDRQPN 751 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR-VQEQAFYHDRHSFEAVLDLNA----A 783 + + + ++TIH+SKGLE+ +V P++ + D + ++ +N Sbjct: 752 SDIAEEAINVITIHRSKGLEFKVVICPYLWQSPSSPRGPLWRDDVKKQWLISINPGWGNG 811 Query: 784 PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ 843 + +D A E E RL YVA+TR+ + ++ + ++L Sbjct: 812 NQIIDSAIVEANQEAERLAYVAMTRAQDKLIVIWIAASKQENNPLKFFLFGPNSLD---A 868 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 K E + T ++A + Q W D + T +R +W Sbjct: 869 KAEDLTFEKMNTWVKANNSNISIRQVDIGKVKGYWDKFDDKSILKLGPTPKRKLDKSWGR 928 Query: 904 TSYSGLQQRGHGIAQDLMPRLDVDA---------------AGVASVVEEPTLT------- 941 SYS + + + + +D V + + L+ Sbjct: 929 HSYSSWISSTYRLNERPLNPDAIDEGKDLEQEVVNLENRNPDVTTFYQRENLSDYNWSKQ 988 Query: 942 --PHQFPRGASPGTFLHSLFEDLDFTQPVDPNW----VREKLELGGFESQWEPVLTEWIT 995 FPRG G LH + E ++F P+ + ++L G + + + + Sbjct: 989 GPLQNFPRGPIAGECLHKILERINFRHPISCKDSELVIVDELRRSGIDEKHRVDVQVALE 1048 Query: 996 AVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 VL + ++ + + RNK E+ F L +S+ + L + + Sbjct: 1049 RVLNIKMGKSLGNLRFKDIDNRNKINELGFDLCLSKNRQPIKTSDLEKTLHSCTKRRFGK 1108 Query: 1054 EFMQ--------VRGMLKGFIDLVFRHEG-----RYYLLDYKSNWLGE----------DS 1090 + RG L G IDLVF + R+++ D+KSNWL Sbjct: 1109 AYSDQIKELNIYSRGFLTGSIDLVFNDQNEFSQKRWWVADWKSNWLANHPTNNLTTYCGP 1168 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE- 1149 + Y+ M M H Y LQ LY +ALHR+L+ R+ Y H GG +Y+FLRG+ + Sbjct: 1169 AHYSASRMEEEMMHHHYLLQANLYLVALHRFLKWRLPGYSPNKHLGGYVYVFLRGIPSQD 1228 Query: 1150 ---------HPQQGIYTTRPNAGLIALMDEMFAGM 1175 + G+ +A + +D + Sbjct: 1229 EINSIPRNSNEMPGLIIEEASAQTVLELDSLIENG 1263 >UniRef50_Q8ERW5 ATP-dependent helicase/nuclease subunit A n=1 Tax=Oceanobacillus iheyensis RepID=ADDA_OCEIH Length = 1243 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 213/1288 (16%), Positives = 441/1288 (34%), Gaps = 212/1288 (16%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M + + + + L+ A+AG+GKT + ++ LL P ++ LL Sbjct: 1 MVNWTKEQEEAIYTSGSDILVAAAAGSGKTAVLVERIIQKLLAEHN------PTNIDALL 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT AA E+R R+ + + + A L Sbjct: 55 VVTFTNAAAQEMRNRVGAALEQALAANPSSI---------------------HLKKQLSL 93 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYP--LP 176 + A++ T+H FC ++ NA+ + ++ +D LL+ + D Sbjct: 94 LQRASISTLHSFCLDIVKKNAYILDIDPSFRIADDMEMDLLKQEVLDDLLEEWYGDSNPN 153 Query: 177 REIAQVVFETW--KGPQALLRDINRYLQGEAPVIKAPPPDDETL-------ASRHAQIVA 227 ++ V + A + ++ R L A P + L + + Sbjct: 154 QDSFFEVVNRFTSDRSDAEMEELIRSLHTFAMQSPWPNQWLDKLVQTYNIPEEWTEEELP 213 Query: 228 RIDTVKQQWRDAVGELDALIE-SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 ++ ++ + + + I+ + I + + AK I++ A +E + + + L Sbjct: 214 WMNVLRDEVSRQLDAVSQEIDIAYSITQEADGPYHYAKTIEEEKAIIQEALKNMESWKYL 273 Query: 287 EK---------------FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL----- 326 ++ + + K ++ + + + A L Sbjct: 274 QQSMLQVKFGKLSGKKVDCDEEKKTKVKKLRDSYKKRFQKMQEVWFARNLDAHVYDMRVL 333 Query: 327 -----VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV-------LAAAI 374 + + + +++ A+ K+ + + F D+ L ES +A + Sbjct: 334 APVIKHLVELVKQFQDSFAKVKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQL 393 Query: 375 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 434 + +F ++DE+QDT+ Q I + I Q + ++GD KQ+IY FR A+ ++ Sbjct: 394 QRQFTEVLVDEYQDTNMVQETILQLISDRQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKY 453 Query: 435 SEVHA------HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALR 488 L N+RS ++ N +F Q D + EI + + Sbjct: 454 KRFSNSDDPSIRIDLARNFRSRENVLLGANYIFRQLFDEDLG-EISYDDAAELIYGNKMY 512 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQST---------MAQVCAAQIRDWL---QAGQRG 536 E +P + + E D + T A+ A QI++W+ + Sbjct: 513 DDHPLEAKPELLLIDNNSEDVEQSDNEETVEDLEKAQIEARAYAKQIKNWIGTPEDEIPM 572 Query: 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 + + R ++ DI +L+RS A+ + D L IP+ Y FE +E + M Sbjct: 573 QVVDKATGKQRDLQYKDIVILMRSMTWASTIADELQQQGIPT-YADLSTGYFEAIEIKVM 631 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDV------------- 640 L L+ + P ++ L S L + ++GL + ++ ++ Sbjct: 632 LSFLKVIDNPRQDIPLASILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSD 691 Query: 641 -------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 +E + +RQ R+ + ++ + + + A GG++R ++ + + Sbjct: 692 TVKSLIRFMEMLNDFRQSARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRALYDR 751 Query: 694 LQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 + T + +R++ + E L + +V+I+TIHKSKGLE+P+V Sbjct: 752 ARGYESTSFRGLYRFLRFIERM--EERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPIV 809 Query: 753 WLPFITNFRVQ----EQAFYHDRHSF---------EAVLDLNAAPESVDLAEAERLAEDL 799 L + Q E+ H F + L+E++ Sbjct: 810 ILGGMNKEFNQRDLSEKYLLHKDLGFASKYIDPVKRIQYPTLYYHAVRQAKFRDMLSEEI 869 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKG---------------------DTDVHQSAL 838 R+LYVALTR+ + + +K D AL Sbjct: 870 RVLYVALTRAKEKLLMVGTVPSIEKKLEKWQRIVDHPSWVLPAYFRMESKTYLDWVGPAL 929 Query: 839 GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA---------------QTGDNQPWQVNDV 883 R + + + +E++ D WQ DN +V + Sbjct: 930 LRHVGSEKIRTENIGNQVLESINQDPSDWQITMNHALDYMDMKDSSMDNDDNLKEKVFNW 989 Query: 884 STAELNAKTLQRLPGD--NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT 941 + E + L+ ++ R +L + +V + P+ Sbjct: 990 ESVETEQEGLKNDVDARLSYEYAYKQATVFRAKQSVTELKRQQEVKDDYSDQQILPPSHG 1049 Query: 942 PHQFP----------RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFES-----QW 986 P A GT LH++ + L T + + E +E E + Sbjct: 1050 PIGKRPNFLQKKLKLSPAEKGTALHTVMQHLPMTHVLSEPEIEENIEKMVLEEKLTRMEA 1109 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 + + + + +S + + E+ F + + + + Sbjct: 1110 DSINIRAVERFFHTEIASKIISGNDM-----HREVPFSIMLPASEVYANWK--------- 1155 Query: 1047 SAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHR 1106 + + +++G ID + + + + +LDYK++++ ++ + HR Sbjct: 1156 -------DQSNEKVLIQGVIDCLLQADTGWIILDYKTDFIEDN-----PTSQKEQELIHR 1203 Query: 1107 YDLQYQLYTLALHRYLRHRIAD-YDYEH 1133 Y Q LY A+ + + + Y Y Sbjct: 1204 YQTQMTLYRRAIEQIWKQPVEQTYLYFF 1231 >UniRef50_A3YYL1 UvrD/REP helicase-like protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YYL1_9SYNE Length = 1285 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 330/1290 (25%), Positives = 507/1290 (39%), Gaps = 145/1290 (11%) Query: 10 PLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 LPL G LIEASAGTGKTFT+A L LRL+ R L++ LLVVTFT+AA Sbjct: 9 ANGLPLDPGVHLIEASAGTGKTFTLAHLVLRLV--------GERQLSLRALLVVTFTKAA 60 Query: 69 TAELRGRIRSNIHELRIACL------RETTDNPLYERLLEEID-DKAQAAQWLLLAERQM 121 AELR RI + + + E D L E L + + LLLA ++ Sbjct: 61 AAELRDRIGRRLQQAQQLLQTPDPAGHEGLDQELKEWLGNIPPQNYERLRAQLLLALEEL 120 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQ 181 D A + TIHGFC R L A E+G+ E +L D +LL+ Q D+W++ PLP + Sbjct: 121 DAADITTIHGFCHRSLQRQALEAGLAPEVELDNDGALLQEQVVHDYWQQQVLPLPAHALR 180 Query: 182 VVFETWKGPQALLRDINRYLQGEA----PVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 + QAL + + P+ AQ A + W Sbjct: 181 GLISKGVQIQALQSLLATLEGDPTLASPELPPRWDPERPLPDQWLAQWKADWQRFQALWE 240 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 L+ + ++ +R++ ++ + K + +++ + LE++ Sbjct: 241 QQGEALEQALCAAAAERKQAGLKSKGPYSAKPRHKRAQLLSAWLQHQPCPGSYTELLEEK 300 Query: 298 TK-----------------AGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA 340 T G P+ P ++ A + V+ R +A Sbjct: 301 TSWIPDYFHPGPISQAAAALEGPRPKLPQPRLLEAAAALVDGPAEAVLGHFCHWARAELA 360 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR- 399 R ++R G + + D+L LD L A+ R+ A+IDEFQDTDP Q+RI R Sbjct: 361 RRRQRGGRMSYGDLLVGLDPGGDGSQRPGLIEALSQRYGAALIDEFQDTDPLQWRILHRA 420 Query: 400 --IWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV 457 QP L+L+GDPKQAIY FRG D+ TY A S + L N+RS+P ++ ++ Sbjct: 421 FAAAAAQPRHLLVLVGDPKQAIYRFRGGDLDTYRTASSTAATSHRLARNFRSSPPLLEAL 480 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 N+L + ++P P+++A + P +WL + Sbjct: 481 NRLMAPGLPR---SQLPVPPLQAARPEGGEPLILPAGQHPLQLLWLGSDRAAAEALPSRG 537 Query: 518 MAQ-VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 + ++ + + G+ +RP++ SD+ +LV Q+A +R+AL + Sbjct: 538 ELENRVGDRVAALVLDLLLRGWRMGEGEGSRPLQPSDLCLLVDRHQQAEDLREALERRGL 597 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 PS LS D VF A + LL A+ P LR A+ ++G + + + E Sbjct: 598 PSRLLSQGD-VFAGEGAALLQRLLDALAEPGSGPRLRLLAASPLLGWSPQQLAAAGSQE- 655 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 WD + + + G++ L L+ + +A L R L D+ +EL+QE Sbjct: 656 -WDRLSGQLARLAERLPDDGLLATLGRLLRSEELARLSLQG----RWLADLQQCAELVQE 710 Query: 697 AGTQLE-SEHALVRWLSQHILE-PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 Q A WL + L P++ +QQ ++ V +VT+H+SKGLE+P+V Sbjct: 711 RLHQQRLGAAASADWLRRRRLHPPETAPENQQPHSDAVASAVGVVTVHRSKGLEFPVVIC 770 Query: 755 PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAE--------------RLAEDLR 800 P+ + P+ + AE R Sbjct: 771 PYFWQGVGSTNRRGGRGIGRRWTPPQASGPQLDVHLDQRWGPGQEAAEQEQAALTAERER 830 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEAL 860 L YVALTR+ LG P + + L L + + +E L Sbjct: 831 LAYVALTRARELLVLGFGPARGQGSNPLIPWLFSDQPLPALEADDDIDAGRSDQEWLEHL 890 Query: 861 CDDDIAWQ--------TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR 912 + + + WQV + + W +SYS Q Sbjct: 891 EGEIERRALPITLISGDPEQPAARRWQVPAEAGDLRTGPVPRWSLLSGWGRSSYSSWTQG 950 Query: 913 GHGI-----------AQDLMPRLDVDAAGVASVVEEPTLTPHQ-------------FPRG 948 HG D R DA G +P FPRG Sbjct: 951 AHGEPLAPEAIEEGRETDGFDRTASDADGPGPQATDPVSPKQGPETWGGRNGPLAMFPRG 1010 Query: 949 ASPGTFLHSLFEDLDFTQPVD----PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE 1004 A+ G LH + E +D QP D V +LE G + + P +++ + P+ Sbjct: 1011 AAAGDCLHRILERVDHRQPGDDPLHRELVERELERAGLDLEHAPATLQFLEQLRHTPMGG 1070 Query: 1005 T--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL------------SAGC 1050 V L+QL R + EM F LP++ AS L+R Sbjct: 1071 ALGEVCLAQLDPRRQLREMPFDLPLALGADASAGRALVRAQGLAEVFSRHPEGSVSGTYP 1130 Query: 1051 PPLEFMQV--RGMLKGFIDLVFRHEG-----RYYLLDYKSNWLGEDSS----------AY 1093 L + V RG L G IDLVF G R+++ D+KSNWLG+ Y Sbjct: 1131 QRLAELNVASRGFLTGSIDLVFTAPGGDGQERWWVADWKSNWLGQRDPQGQPVACGPLDY 1190 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQ- 1152 + MAA M++H Y LQ LY +ALHRYL R+ Y+ + GG +Y+FLRGV Sbjct: 1191 GRDEMAAVMESHHYPLQAHLYLVALHRYLGWRLPGYNPQRDLGGSVYIFLRGVPGAISPP 1250 Query: 1153 ----------QGIYTTRPNAGLIALMDEMF 1172 G++ G + +D + Sbjct: 1251 PDLTMAELSVPGMFVEPAPLGRLEALDALL 1280 >UniRef50_Q71X99 ATP-dependent helicase/nuclease subunit A n=17 Tax=Listeria RepID=ADDA_LISMF Length = 1235 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 214/1260 (16%), Positives = 442/1260 (35%), Gaps = 208/1260 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+ + L V+ELL+VTFT A+ AE++ RI Sbjct: 28 NVLVAAAAGSGKTAVLVTRIIEKLINESAN------LNVDELLIVTFTNASAAEMKFRIG 81 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E T L ++ A++ T+H FC ++ Sbjct: 82 KGLEEALAQNPDST---------------------HLKRQVALLNYASISTLHSFCLEII 120 Query: 138 NLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 F++ + +LIE + S++R + + + E + E++ G Sbjct: 121 RKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVESFTG-DRSDA 179 Query: 196 DINRYLQGEAPVIKAPPPDDETLAS---------------------RHAQIVARIDTVKQ 234 +++ + +A P + L I R++ K Sbjct: 180 ELHALISKLYDFSRANPDPNIWLEEMVDFYNTEETTSITELPYFPIIKEDIELRVNQAKN 239 Query: 235 QWRDAVG--------------------ELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 +A+ +++A+ E S + ++ ++ +I Sbjct: 240 YLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWNSWGQLKKAIESIDFKRIPTLKN 299 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 + + E +KF ++ + + L E + ++R + + Sbjct: 300 KSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDL--EKMKPDIKTLSRLVKK 357 Query: 335 IRETVAREKRRRGELGFDDMLSRLDS-ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 E EK++RG L F+D+ L+ +A + +F +IDE+QDT+ Q Sbjct: 358 FAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKEVLIDEYQDTNMVQ 417 Query: 394 YRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDT 445 I R + + E L ++GD KQ+IY FR A+ +M L Sbjct: 418 ETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTYQQDGNGSGIRIDLSQ 477 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS ++++ N +F Q D + I I +A + L F T A ++ L++ Sbjct: 478 NFRSRKEVLDATNFIFHQLMD----KHIAEIDYDAAAEL-TLGASFPETTDMATELLLID 532 Query: 506 GESCGVGDYQST----------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 +S ++ A +I++ + + RP++ DI Sbjct: 533 MKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDN--KFPIFDKKMKQNRPIQYRDIV 590 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 +L R+ A + +A+ + +IP Y +N FET E M+ L++ + P ++ L + Sbjct: 591 ILARAMTSAPDMEEAMKVQDIPF-YANNNSGYFETTEVATMIALMKVIDNPYQDIPLAAV 649 Query: 616 LATSMMGLNALDIETLN---NDEHAWDVVV------------------EEFDGYRQIWRK 654 L + ++GLN ++ + + + +D ++ ++ + +R++ + Sbjct: 650 LRSPIIGLNEEELGQVRMAKKNGYFYDALLTYKDTTVSETADKMSDFIQQLNNWRELSIR 709 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQ 713 + ++ + N E + GG++R ++ + + Q T VR++ + Sbjct: 710 ENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVER 769 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY----- 768 LE + L + +V+++TIH SKGLE+P+V + ++ + Sbjct: 770 --LEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVSGLSRKFNMRDIYSKTLLD 827 Query: 769 --------HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 + V E +AE++R+LYVALTR+ L Sbjct: 828 KDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMIAEEMRVLYVALTRAEEKLILTATVP 887 Query: 821 VRRRGDKKG-----------DTDVHQSALGRLLQKGEPQDAA-----------------G 852 + K A L G Sbjct: 888 DFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWIGNATIRHPNFKELLCEEMIQTLPTD 947 Query: 853 LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY---SGL 909 ++ IE + + + W N + K+ + + Y Sbjct: 948 MKLQIEIKTKEMFLTNELEKTETVNWLENIKEHQPIPVKSPYKDEIQRYMNYEYQNEEAT 1007 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASV---------VEEPTLTPHQFPRGASPGTFLHSLFE 960 + R +L + + + + ++ P GT +H+L + Sbjct: 1008 EIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQ 1067 Query: 961 DLDFTQPVDPNWVREKLELG-----GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSAR 1015 + + + L+ E+Q + + + + ++ L +T + L Sbjct: 1068 AVSLEHQPTKEDLEQLLQTMREKDILTEAQLKAINIKQVLGFFESQLGKTMLQKKDL--- 1124 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 + E+ F + + ++D + R +++G +D + E Sbjct: 1125 -VKREVPFSYLLPVSELYEKVD------------------IDERVLIQGVVDSMIEEEET 1165 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI-ADYDYEHH 1134 L+DYK++ + Y+ A + RY +Q +LY A+ ++ A Y Y Sbjct: 1166 ITLIDYKTDKIEGR---YSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFFD 1222 >UniRef50_B9DZK4 ATP-dependent helicase/nuclease subunit A n=13 Tax=Clostridia RepID=ADDA_CLOK1 Length = 1238 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 203/1292 (15%), Positives = 428/1292 (33%), Gaps = 219/1292 (16%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + ET L+ A AGTGKT + L+ ++ + +++LLV Sbjct: 6 TKWTETQKSAIFTPNCNLLVAAGAGTGKTAVLVERILQKVINDSEE------VDIDKLLV 59 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT AA +E++ R+ + +L + ++ L + Sbjct: 60 VTFTNAAASEMKERVGEALSKLL---------------------ELNCTSKNLQRQLALL 98 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREI 179 +++ + TIH FC +++ N + ++ +D LL+ A + + Sbjct: 99 NQSNIMTIHSFCLKVIKNNFHRIDLDPNFRICDDTESKLLKQDALLELFEEKYEEENLGF 158 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR-- 237 + + L+DI L + P + + + + D +W Sbjct: 159 LNLADGYGGKNDSKLQDIVLSLYEFSQGSPWPKRWLQDVLKDF-NLGSDFDFGDTKWAKV 217 Query: 238 -----------------------DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 + + L+ +E D ++ D+I Sbjct: 218 LMHNVTVELKGCKNKMKNILNTIENIEGLEHYLEPFKSDIESIDKLINITTWDEIRDEFI 277 Query: 275 EETNSYQLPESLEKFSQRFLEDR------TKAGGETPRHPLFEAIDQLLAEPLSIRDLV- 327 + + + + + + + + K + R + D + + L+ Sbjct: 278 KLSFNKLPSKRTDPLVKSYKDKARNTRDEVKKKLISIREDIILCTDDIYENFKEVYPLMK 337 Query: 328 -ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPV 380 +T + + E +K R + F+D+ L S+ A R F Sbjct: 338 SLTFLVMDFYEKYHNKKSERNMIDFNDIEHFCLEILTSKDKNGDIIPSEAALEYREYFEE 397 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-- 438 IDE+QD++ Q I I L ++GD KQ+IY FR A +++ + Sbjct: 398 IFIDEYQDSNEVQEVIMNMISRKNIYANLFMVGDVKQSIYRFRQARPELFLEKYNSYDEK 457 Query: 439 -----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 L N+RS +++++N +F Q + + K+ A F+G Sbjct: 458 EGSKNRKIKLSENFRSRKEIIDAINYIFKQIMCREVGELDYGE--EECLKSSARYEPFEG 515 Query: 494 ETQPAMKMWLMEGESCGVGDYQ----------STMAQVCAAQIRDWLQ---AGQRGEALL 540 +++ +++ + S A++ A++I + + + Sbjct: 516 NCGGDVELHVVDKKENENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYD 575 Query: 541 MNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 D+ R + DI +L+R ++ A + L IP V+ F+ +E + ++ L Sbjct: 576 KEIDNYRSIMYKDIVILMRATQNWAPAFVEELNNSGIP-VFADTSVGYFQAIEIKTIISL 634 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLN--------------------------- 632 LQ + P ++ + L + + G + D+ L Sbjct: 635 LQIIDNPLQDIPFIALLRSPIGGFSPEDLIDLRVVNREISFYEILKAIKEHSLELKYSLE 694 Query: 633 ----NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 E+ + + +R+ + + + + A GG +R ++ Sbjct: 695 HIDERLEYKVEQFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLR 754 Query: 689 HISELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 + E ++ + + ++++ L+ S L ++++V+I++IHKSKGL Sbjct: 755 MLFERAKQYKNISYKGLFNFINFINK--LKSSSTDMGNAKILGENENVVRIMSIHKSKGL 812 Query: 748 EYPLVWLPFITNFRV----QEQAFYHDRHSFEAVLDLNAAPES---------VDLAEAER 794 E+P++ L + +H + S + E Sbjct: 813 EFPVIILSGAGKRFNLTDINKSVLFHKELGLGPEYVNSERHISYPTIVKQVLKRKLKMET 872 Query: 795 LAEDLRLLYVALTRSVWHCSLG------------VAPLVRRRGDKKGDTDVHQS------ 836 L+E++R+LYVA TR+ + DK + + S Sbjct: 873 LSEEMRILYVAFTRAKEKLIITGTVDNIENTFQRWCEAAYCEEDKLPEYSLINSRNFLDW 932 Query: 837 ---ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ-TGDNQPWQVNDVSTAELNAKT 892 A+ R + + + DD W+ + DN +++ ++ K Sbjct: 933 IGPAVARHPCGEIIRKVCPFEYNLNLITGDDSKWKVFVYSKDNFKSTLDENIDEDIIGKI 992 Query: 893 LQRLPGD-------------NWRVTSYSGLQQRGHGIAQDLMPRLD-VDAAGVASVVEEP 938 + NW + +L R +D +E Sbjct: 993 KSLELDNNKEIYKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFKLIDTENGIEFMEPI 1052 Query: 939 TLTPHQFPR------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTE 992 L F R + G +H + + +D + ++E+++ F + Sbjct: 1053 YLKKPAFLRESKGLTPSERGIVMHLVMQHIDIDKVGSYEQIKEQVDKLVFREFITEAEAK 1112 Query: 993 WI--TAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC 1050 I +++ +E G+ + + N E+ FY+ I + QL I Sbjct: 1113 SISVYKIIKFFNSEIGIRMK--KSNNVYREVPFYMEIESTELYKQLPQHI---------- 1160 Query: 1051 PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 + + +++G ID F L+DYK++ +G+ S +Y +Q Sbjct: 1161 ----YRDEKVLIQGIIDCYFEENNELILVDYKTDHVGDIDS-----------IKEKYQVQ 1205 Query: 1111 YQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 Y AL + ++ +YLF Sbjct: 1206 IYYYGRALEKLTGKKVKK--------KYLYLF 1229 >UniRef50_C0DS65 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DS65_EIKCO Length = 1241 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 348/1274 (27%), Positives = 533/1274 (41%), Gaps = 134/1274 (10%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M D PL P QG L+EASAGTGKT++IAAL+ RL+ E +L Sbjct: 1 MQDFHVAQLPL--PPQGTHLVEASAGTGKTYSIAALFTRLV--------VLEGWAPENIL 50 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACL-RETTDNPLYERLLEEIDDKAQAAQW---LLL 116 VVTFTEAATAEL+ R+R+ + E+ A ET + + LL E K + ++ L Sbjct: 51 VVTFTEAATAELKNRLRARLGEVLAALQSGETPADEFLQHLLAEALAKQERSKLILQLQA 110 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A D AA++TIHGFC R+L AF G+ FE + ++ R A DFWR H P Sbjct: 111 ALSGFDTAAIYTIHGFCLRVLGDYAFLCGVPFELETGPVDTAARLVAAQDFWREHVADHP 170 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 + A++ P ++L + + L+ + P +R QI + Q+ Sbjct: 171 QN-ARIAARFGITPASVLAEFSGSLKRAFLDYRLP-------ENRLTQIQKGLHAAWQKL 222 Query: 237 RDAVGELDALIE--SSGIDRRKFNRSNQAKWIDKISAWAEEETNS-YQLPESLEKFSQRF 293 + V E++A+ + FN S + + A E P+ L F + Sbjct: 223 QRNVEEIEAVYRRIKPQLHGGTFNASIDTLFTELRQAAQEGLEQPVLSKPDRLLCFEENA 282 Query: 294 LEDRTKAGGETPRHPLFEA---------IDQLLAEPLSIRDLVITRALAEIRETVAREKR 344 L +R + + + ++ + L ++ +A +KR Sbjct: 283 LRNRIRKNQHIEEADIAALQPLAVFGRRLAEIDDAEQEAAIRLKLECLGYLKTRLAEDKR 342 Query: 345 RRGELGFDDMLSRLDSALRSESGE----VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 R +DD+L + +AL + LA A+ ++ VA+IDEFQDTDP QY IF Sbjct: 343 RSSRRDYDDLLLDVHAALSNPEHPEQAEALAQALAAKWRVALIDEFQDTDPLQYAIFHTA 402 Query: 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVN 458 + Q + L+GDPKQAIY FRGADI Y+ A ++ YTL TN+RS +VN + Sbjct: 403 FIRQ-GVPVFLVGDPKQAIYGFRGADIHAYLAAAADTAPEQSYTLHTNYRSHRDLVNGIG 461 Query: 459 KLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA-MKMWLMEGESCGVGDYQST 517 LF+ F+ +I + V++A L + + +G+ + Sbjct: 462 HLFAARSRPFVLPQIAYPAVQAARAESLLSPAPEAAVAVRWINPSAEDGKLPNKDFLREL 521 Query: 518 MAQVCAAQIRDWLQAGQRGEALL--MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 A CA +I L G ++ + +P+ I+VLVR +E V AL Sbjct: 522 SANYCAREIAARLNQAFSGSLMIEGKDSKKNKPLHPGQIAVLVRKHEEGEMVARALKRRG 581 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 + SV L + SVF+T EA+ + LL + P++ LR L G A D+ LN +E Sbjct: 582 VRSVLL-QQQSVFDTPEAEALHALLLFWLAPQQTEYLRFVLGGIFYGYTAQDLAELNGNE 640 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ 695 + + + + W++ G+ L + ++LL T ER T+ ++E+L Sbjct: 641 NRLAEWITLAETAAEAWQQHGIYTALTRFARQSGLEQHLLHTRN-ERSFTNFRQLAEILA 699 Query: 696 EAGTQLESEHALVRWLSQHI--------------LEPDSNASSQQMRLESDKHLVQIVTI 741 A + S AL +WL + D Q+RLESD+ LV+IVT+ Sbjct: 700 LAAAECASPVALAQWLEMRLKSSKKNKKSKENKNDREDKGNKEYQLRLESDEDLVKIVTM 759 Query: 742 HKSKGLEYPLVWLPFITNFRVQ----EQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAE 797 H +KGLEYPLV+ PF+ + + + E AE L E Sbjct: 760 HAAKGLEYPLVFCPFVWDTSDKLVQDWNIISQSNGRNLLLAKAQLDEEDERQLFAEDLGE 819 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGD----------KKGDTDVHQSALGRLLQKGEP 847 LRLLYVALTR+ L AP + + + G Q Sbjct: 820 RLRLLYVALTRAREQLVLYAAPCSNTPENTFAYLLAEIGEDDCQAIRDDWRGLKGQALTE 879 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 I++ + W + + ++ + A L P R TS++ Sbjct: 880 ALRQAWLKRIQSAAPGQLQWLEGEPPEAN-YRARNEQQGSYRALVLPERPLQFIRHTSFT 938 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ----------------------- 944 GL ++ + L L D A P + Sbjct: 939 GLSRQTLTAEEWLPENLLADENPAAETERLPENERSEFLRSKNVSDELRANGQNVVQPNG 998 Query: 945 ---------------FPRGASPGTFLHSLFEDLDFTQPVDPNWV--REKLELGGFE-SQW 986 FP G PG LHS+ E DF + L+ GFE W Sbjct: 999 QGNLWLNEAETALLAFPAGTQPGICLHSILEQTDFVHLAAEQAASYADILDKHGFEAEAW 1058 Query: 987 EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL 1046 P + E + AV + PL E + L+ + A ++ EM F L + + + R L Sbjct: 1059 LPAVLEMVEAVRRVPLAE-NMQLADIPADSRVAEMGFVLHLHDFGLKRLRRWFARSDIGL 1117 Query: 1047 ----SAGCPPLEFMQVRGMLKGFIDLVFR-HEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 +A P L+F V G L GFIDL+ GR ++DYKSN LG + Y + AM+AA Sbjct: 1118 PENAAAHLPQLDFHAVTGFLNGFIDLIAAGKNGRVCVIDYKSNHLGSRLADYGRAAMSAA 1177 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHR--IADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTR 1159 + H Y LQ +Y +A RYL+ R + +Y + V YLF+RG++ H Q+G++ Sbjct: 1178 VSEHHYYLQALIYAVATARYLKQRRALPEYIH------VRYLFVRGLNP-HGQEGLWCWD 1230 Query: 1160 PNAGLIALMDEMFA 1173 ++ + E Sbjct: 1231 IP---VSALQEWLE 1241 >UniRef50_Q057F5 Exodeoxyribonuclease V, b chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F5_BUCCC Length = 1167 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 321/1174 (27%), Positives = 620/1174 (52%), Gaps = 16/1174 (1%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ +P G LIEASAGTGKTF+I YLRL+L +G ++ P+ ++++L+VTFTE Sbjct: 5 PLNTKEIPHFGITLIEASAGTGKTFSIIIFYLRLILNIGIKKSYSSPIPIKKILIVTFTE 64 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 A EL+ R+ I +L + + + +EI D + ++ L A++ +D+ + Sbjct: 65 TAKNELKERLYKKICQLYYMSINKNYYVKDLKDFKKEIKDFKKISKLLKKAKKNIDQINI 124 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIH F +++L F Q +I + ++++A DFWR++ Y EI +++F+ Sbjct: 125 YTIHSFFRKILIEQKFLCKKKIYQNIITNIKKIQFEATKDFWRKYVYYQNIEIIKLIFKK 184 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 WK P L + I ++ IK +L ++ I+ I+ K+ W+ ++ L Sbjct: 185 WKNPLELFKHIYIWISQIKIKIKHDFKKKSSLIKKYNLIIKLINKAKKTWKIDKKKIKFL 244 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPR 306 I+ ++++K N+ W KI W+E++T Y +P+ L+ F K + Sbjct: 245 IKKIYLNKKKNNKKKIKIWCKKIQIWSEKKTIKYSVPKILKHFI-------LKKIKKKKE 297 Query: 307 HPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES 366 + F I ++ I AL +I + + ++K+ + L F+D+ + + ++ + Sbjct: 298 YLFFLYIKKIFFYYKLFFKYFIYLALKKIPKLIKKKKKMKKGLEFNDLNTIMWKEIKKKK 357 Query: 367 GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD 426 + ++ ++MIDE QD D Q+ IF +I+ + + +L+LIGDPKQ+IY+FR ++ Sbjct: 358 INYKKNIL-KKYTISMIDECQDIDNYQFNIFYKIYKKKKKKSLILIGDPKQSIYSFRNSN 416 Query: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 IF Y+K + ++ + L N+RS+ M S+N LFS+T + F+F++I F P + KN Sbjct: 417 IFLYLKYKKKIQKCFFLKKNFRSSINMTKSINTLFSKTKNPFIFKKINFQPSLANKKNNK 476 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL-QAGQRGEALLMNGDD 545 + V TQPA+K ++ +Y + ++++CA I + L + ++ Sbjct: 477 NKLVINNITQPALKFIFKNKKTINKNEYFTWISKMCAYSINNLLSNKSTKKSFIIFKNKK 536 Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 R ++ +DI++LV+++ EA ++ I ++Y S + ++F+T EA+E+L++++++ Sbjct: 537 KRSIKNTDIAILVKNKYEANIIKKEFKKYGIKTIYTSEKKNIFQTKEAKEILFIIESLSD 596 Query: 606 PERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM 665 L+ L T + N DI ++NN + + ++++ Y IW+K+ + M + ++ Sbjct: 597 LSNILKLQKLLMTKIFSKNIYDIYSINNKKKTYSSLIKKLKKYYLIWKKKNIFFMFKKII 656 Query: 666 SARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 725 + + + +I+ + E+L+E ++++ L WL + IL+ + + Sbjct: 657 FDFCFQKKNIKLKINNINIYNIIQLCEILEEKNKSIKNKFLLTIWLRKKILKKNIEKNKS 716 Query: 726 QMRLES----DKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN 781 + +++ DK ++I+TI+KSKGLEYP++W+PF ++F+ ++ + + + + +++L Sbjct: 717 KNLIQNKNINDKKFIKIITIYKSKGLEYPIIWIPFFSSFQKKKNQIIYCKKTLKKIVNLK 776 Query: 782 AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841 +++ E ERL+ED+RLLYVA+TRS+ HC +G+A + ++ +K T+ H++ LG L Sbjct: 777 NEKKNIISLEKERLSEDIRLLYVAITRSIIHCCIGLAVIKNKKNEK--YTNFHKNCLGYL 834 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 +QKG+ + + + L + + + + +++ +W Sbjct: 835 IQKGKKKKFKNFKKNLYDLQIPGLIEIKKSNKVKKKFFKKKKRKKKNIFFFNKKIKQYSW 894 Query: 902 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED 961 TS+S + + + + + + + + H FP G G +LH +F+ Sbjct: 895 TNTSFSKIIKYNQLKKNIINIKKENFINKINYNKKTSQINLHSFPLGKEFGIYLHDVFKK 954 Query: 962 LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 + F + + +K F + L WI L+ PLN +SL ++ + Q E Sbjct: 955 IKFFKTKKTKKILKKTNFLSFSNILIKKLYLWINIFLKFPLNNENLSLEKIRKKEHQKET 1014 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 +F +PI + + + + +I++FDP+S C + + G+L G IDL+F + +YY+++Y Sbjct: 1015 KFIIPIKKKINIKKFNLIIKKFDPISKKCSNIFYKNFFGILNGSIDLIFLWKKKYYIIEY 1074 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYL 1141 KSNWLG DSS Y + + + +RYD+QYQ+Y+L LH YL+ ++ +Y+Y HFGG+ YL Sbjct: 1075 KSNWLGPDSSYYNSKNIKKEIIKYRYDIQYQIYSLVLHCYLKKKLKNYNYNTHFGGIFYL 1134 Query: 1142 FLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGM 1175 FLR D ++ G Y +P+ LI ++ + G Sbjct: 1135 FLRAFDNKN-NTGTYFIKPSYLLIKNLENLIYGN 1167 >UniRef50_A0AL18 ATP-dependent helicase/nuclease subunit A n=3 Tax=Listeria RepID=ADDA_LISW6 Length = 1235 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 215/1255 (17%), Positives = 441/1255 (35%), Gaps = 198/1255 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+ G+ L V+ELL+VTFT A+ AE++ RI Sbjct: 28 NILVAAAAGSGKTAVLVTRIIEKLVDETGN------LNVDELLIVTFTNASAAEMKYRIG 81 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 ++ E L + D+ L ++ A++ T+H FC ++ Sbjct: 82 KSLEEA----LSQNPDSS-----------------HLKKQVALLNYASISTLHSFCLEII 120 Query: 138 NLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 + FE+ + +LIE + S++R + + + E + E++ G Sbjct: 121 RKHYFEADIDPNFRLIEPIESSMIRDEVLEELLEKEYSIANNEAFFHLVESFTG-DRTDA 179 Query: 196 DINRYLQGEAPVIKAPPPDDETLAS---------------------RHAQIVARIDTVKQ 234 +++ + +A P D L I RI+ K Sbjct: 180 ELHMLISKLYDFSRANPNPDLWLEQMVNFYDTKDINSITELPYFPIIKEDIELRINQAKS 239 Query: 235 QWRDAVG--------------------ELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 +A+ +++ L S + + ++ +I + Sbjct: 240 YLLNAIEYASENNGPAPYLETLENDLAQINTLSNISWTNWQDVKLRVESMDFKRIPSLKN 299 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 + + E ++F ++ + + L E + I+ + Sbjct: 300 KSDYDEEYVEETKRFRDAAKKEIKNVLVDWFSREETNYLADL--EKMKPDIKTISELVKN 357 Query: 335 IRETVAREKRRRGELGFDDMLSRLDS-ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 EK+RRG L F+D+ L+++ +A + + +F +IDE+QDT+ Q Sbjct: 358 FANNFFEEKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKEVLIDEYQDTNMVQ 417 Query: 394 YRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDT 445 I + + + + L ++GD KQ+IY FR A+ +M E L Sbjct: 418 ETILLLVTNSEESKGNLFMVGDVKQSIYRFRLAEPTLFMTKYQEYQQNGEGEGIRIDLSQ 477 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS ++++ N +F Q D + + + + M E Sbjct: 478 NFRSRKEVLDATNFIFHQLMDKHVAEIDYDEAAELTLGANFPKSNHMATELLLIDMKSNE 537 Query: 506 GESCGVGDYQST-----MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 ES Q A+ A +IR+ + + R ++ DI +L R+ Sbjct: 538 NESEDELSPQELQKNQVEARAIATKIREMIDN--KFPIYDKKLQQNRSIQYRDIVILSRA 595 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 A + +A+ + +IP Y SN FET E M+ LL+ + P ++ L + L + + Sbjct: 596 MTSAPDMEEAMKVQDIPF-YASNNSGYFETTEVATMIALLKVIDNPYQDIPLAAVLRSPI 654 Query: 621 MGLNALDIETLN---NDEHAWDVVVE------------------EFDGYRQIWRKRGVMP 659 +GLN ++ + + +D ++ + + +R++ + + Sbjct: 655 VGLNEEELGQIRMAKKKGYFFDALLAYKDITVSAAADRISDFITQLNNWRELSIRENLTA 714 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEP 718 ++ + N E + GG++R ++ + + Q T VR++ + LE Sbjct: 715 LIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTAFRGLFRFVRFVER--LEV 772 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY---------- 768 + L + +V+++TIH SKGLE+P+V + ++ + Sbjct: 773 RGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIISGLSKKFNMRDIYSKTLLDKDYGF 832 Query: 769 ---HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 + V E +AE++R+LYVALTR+ L + Sbjct: 833 ASNYRDIEKMIVYPTIMQQAIKQKKSREMIAEEMRVLYVALTRAEEKLILTATVPDFEKT 892 Query: 826 DKKG--DTDVHQSALGRLLQKGEPQDAAG--------------------------LRTCI 857 K ++ ++ L ++ ++ I Sbjct: 893 SKNWLQVSNQKETILPASIRAKAKCYLDWIGNTIIRHTSFKDLLCEERIQTLPTEMKLQI 952 Query: 858 EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY---SGLQQRGH 914 E + + W N + + ++ + + + Y + + R Sbjct: 953 EIKTKEMFLTTELEEHKADNWLENVKAHEPVPVQSAYKDEIERFMNYKYKDVAATEIRAK 1012 Query: 915 GIAQDLMPRLDVDAAGVAS---------VVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT 965 +L + + + + ++ P GT +H+L + + T Sbjct: 1013 QSVTELKRQFSLQDSWSDTSILKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLT 1072 Query: 966 QPVDPNWVREKLELGG-----FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 1020 + L+ E+Q + + + I +PL ET + S + E Sbjct: 1073 YKPSEKDLTSLLQSMQEKDILTEAQIKAINIKQIMGFFDSPLGETVLQKSD----QVKRE 1128 Query: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 + F + + Q D ++ +++G +D + E L+D Sbjct: 1129 VPFSYLLPVAKLYKQSD------------------LEEHVLIQGVVDSMIEEEDAITLID 1170 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHH 1134 YK++ + Y A + RY +Q +LY A+ ++++ Y Y Sbjct: 1171 YKTDKIEGR---YANWEAAEKVMKERYQIQIKLYAEAIQAITGKKVSNAYLYFFD 1222 >UniRef50_B6G1B8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1B8_9CLOT Length = 1256 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 195/1306 (14%), Positives = 422/1306 (32%), Gaps = 244/1306 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 G L+ A+AG+GKT + + ++L + +++ LVVTFT AA +E+R R Sbjct: 18 DGNLLVSAAAGSGKTAVLVERIISMILDT------EEKVDIDKFLVVTFTNAAASEMRER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I +K + + L +++A + TIH FC Sbjct: 72 IGDAISTAL---------------------EKDPSNEHLQKQILFLNKANITTIHSFCLD 110 Query: 136 MLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCY---------PLPREIAQVVF 184 ++ N + ++ + + L+ +A + + + +++ Sbjct: 111 VIKNNIHLITLDPNFRIGDTTECQLIAQEAIDEVFEELYEQGYLGDENSEKGKRFLKLID 170 Query: 185 ET----------------------WKGPQALLRDINRYLQGEAPVIKAPPPD-------- 214 + P+ L + + Sbjct: 171 SFAERNGDNQVQSLIMSIYNFAMSFPNPEKWLNESADAFLVDDDFDFTSSKWGRIVINSV 230 Query: 215 DETLASRHAQIVARIDTVKQQWRDAV---------GELDALIESSGIDRRKFNRSNQAKW 265 + + + TV + +D + S F ++ + Sbjct: 231 KTEIEDIVGNMEKALATVHPYLGEIENIQKIITESERIDVVYNSLDKGWDDFIKAIGEFY 290 Query: 266 IDKISAWAEEETNSYQLPESLEKFSQRFLEDRT---KAGGETPRHPLFEAIDQLLAEPLS 322 + + + + K + + ++ K E ++ + I + + Sbjct: 291 PEDYRKGKKIKKDDPDEMREAWKIATEYRKEAIESMKKVAEMYKNRYSKDIKKEID-MSY 349 Query: 323 IRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRT 376 I+ A+ E + KR +G + F+D+ L E A Sbjct: 350 PIVRAISDAVLEFWKKFEEAKRDKGIIDFNDIEHFALEILVDEDENGRQIPSETAKRYSE 409 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE 436 F +DE+QD++ Q I I + + ++GD KQ+IY FR A ++ Sbjct: 410 EFKEIFVDEYQDSNLVQEAILSSIANKEMPNR-FMVGDVKQSIYRFRQAKPEIFLHKYET 468 Query: 437 V-------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALR 488 L N+RS ++++VN +F + E + G Sbjct: 469 YSTEKDKDGRKIMLYKNFRSRKNVLDAVNFIFENIMSKELGEIEYNDDEKLNPGAVFEEC 528 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQ-----------STMAQVCAAQIRDWL---QAGQ 534 + + + ++E ++ + A+ I++ + G+ Sbjct: 529 YEENAIVGGSCDVHIIEKKANENLTDEQLEEEEDLDNIQIEARAIGKIIKEIVGKNSDGK 588 Query: 535 RGEALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 R + DI +L+R + A+ + + T ++IP VY F+T+E Sbjct: 589 IQMVYDKEEKRYRQAKYKDIVILLRATSNWASVLTEEFTNMDIP-VYADTGTGYFDTIEI 647 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDV---------- 640 + ++ LL+ + P ++ L + L + + ++ + + ++ Sbjct: 648 KTIVSLLKVIDNPMQDIPLLAVLKSPIYNFTPEELIDIRIVNRNVSFYEAMKIYASFDDC 707 Query: 641 -------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 +E D Y++ +L L + G++R ++ + E Sbjct: 708 DNKKVRDFLERLDDYQERSSYLSTDELLWYLYNETGYYAYAAILPAGKQRQANLRILFER 767 Query: 694 L-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 Q T + + ++ + L+ + + L + +V+I++IHKSKGLE+P+V Sbjct: 768 AKQFEDTSFKGIFNFINFVEK--LKKSDSDMGEAKTLSENADVVRIMSIHKSKGLEFPIV 825 Query: 753 WLPFITNFRV----QEQAFYHDRHSFEA-VLDLNAAPESVDLAEA--------ERLAEDL 799 + YH + V++L + + E L+E++ Sbjct: 826 ICGGMGKRFNKMDMNRGILYHHELGYGPQVVNLETRLSYPSMMKEAMKKQMVVEMLSEEM 885 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA 859 R+LYVA TR+ + A + +K ++ + L + +A I + Sbjct: 886 RVLYVAFTRAKEKLIITGAVNDVEKNLQKWASNSQKVTKNNKLDRYNLLKSASFLDWIMS 945 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVS------------------TAELNAKTLQRLPGDNW 901 + + D++ + ND S E+N + R + Sbjct: 946 VAIAHKDARGILPLDSEIVEKNDESEWKFKIHQREDYTLSSEDEEEINLADVLREELTSS 1005 Query: 902 RVTSYSGLQQ-------------------------RGHGIAQDLMPRLDVDAAGVASVVE 936 R YS + + R + ++ +D++ + + Sbjct: 1006 REVDYSEIVRNRLDFKYPYQKSVEKSGSISVTEIKRLWNLEREDNLEIDINEIESSRNNK 1065 Query: 937 EPTLTPHQF--------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEP 988 + + +F G+ +H + + ++ + + ++ ++E + Sbjct: 1066 KTEIKRPKFIQENKDEKLSPTHRGSVVHLVMQIINMDRVSTIDEIKNQIEEFVQKEIITQ 1125 Query: 989 VLTE-----WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 + I ++ L +A E FY I+ + L + Sbjct: 1126 KEADVVNPFKIYKFFKSELGTRMK-----NADFVGREKAFYTEIN-------MKNLFAKE 1173 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 ML+G ID F G LLDYK++++ E++ Sbjct: 1174 GI---------DYDESIMLRGIIDAYFEENGEIVLLDYKTDFVNEEN---------REEV 1215 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKE 1149 RY Q ++Y + ++ + IYLF GVD+ Sbjct: 1216 VDRYRKQLEIYAKVIEEITDKKVKE--------QYIYLF--GVDES 1251 >UniRef50_Q8RCZ0 ATP-dependent helicase/nuclease subunit A n=3 Tax=Thermoanaerobacteraceae RepID=ADDA_THETN Length = 1204 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 217/1252 (17%), Positives = 430/1252 (34%), Gaps = 201/1252 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + ++ +P+ ++ LLVVTFT AA +E+R RI Sbjct: 19 NVLVAAAAGSGKTAVLVERIINIVTD------PEKPVDIDRLLVVTFTNAAASEMRERIA 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + L D+ + L +++A + TIH FC ++ Sbjct: 73 ERLISLL---------------------DQHPEDKRLADQLTLLNKATITTIHSFCLDVV 111 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGP-QALL 194 + F + ++ +D LL+ +A + + +V L Sbjct: 112 RKHFFLLDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDEGFLLLVESYGGTKGDQYL 171 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE------------ 242 +D+ L G + P + + +W + + + Sbjct: 172 QDVLLKLYGFIRSLPWPEKWLNNVLEAFE-VKEDFSFEDSKWAEVILDSIKVEILGLLNG 230 Query: 243 ----LDALIESSGIDRRKFNRSNQAKWIDKISAW--------------AEEETNSYQLPE 284 ++ L E G++ ++A + ++ E + + + Sbjct: 231 MSVAIEKLREERGLEGYLSLFQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASKEAD 290 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRETVAR 341 + K R L + K R F ++ + + V + + + Sbjct: 291 AEVKEEVRKLREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKKYGE 350 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 +K+ +G + F+D+ L +E + + R +F IDE+QD+ Q I I Sbjct: 351 KKKEKGVIDFEDIEHFALKILSNE---EVVSYYREKFEEIFIDEYQDSSLIQEAILSLIA 407 Query: 402 HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-----AHYTLDTNWRSAPGMVNS 456 P ++GD KQ+IY FR A+ + + + + L N+RS ++++ Sbjct: 408 RDNPPNR-FMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGENKKILLYKNFRSRKEIIDA 466 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ- 515 VN +F + + K F+ E + +++ L+E E + Sbjct: 467 VNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKENERTVEVHLIEREREEEFEEDE 526 Query: 516 ------STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR-QEAAQVR 568 A V +I+ + G + RPV DI VL+R+ + A Sbjct: 527 EILDDMQVEAHVVGERIKGLFREG--FKVYDKEIGGYRPVEYRDICVLLRATEKWAYAFE 584 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDI 628 + + IP V+ F+T E + ML LLQ + P ++ L + L + + ++ Sbjct: 585 EEFVKMGIP-VFADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRSPIFSFTEEEL 643 Query: 629 ETLN---NDEHAWDVV-----------------VEEFDGYRQIWRKRGVMPMLRALMSAR 668 + D ++ + ++ +++ V L L Sbjct: 644 VDIRLEDADGTIYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVDEFLWYLYEET 703 Query: 669 NIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 + A G R ++ + E + T + V ++++ L S Sbjct: 704 GFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINR--LRTTSTDMGSAK 761 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHD---------RHSF 774 + ++++V++++IHKSKGLE+P+V + + E+ YH + Sbjct: 762 TVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHFLGIGPEFVDYRR 821 Query: 775 EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG----- 829 + E L+E++R+LYVALTR+ L + + KK Sbjct: 822 RLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERAKKWGKAKL 881 Query: 830 ------------DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQT-------- 869 L++ + + L D W+ Sbjct: 882 LGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAEISPELEQDSSKWEVKIWNKRDV 941 Query: 870 -----AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 924 G ++N ++ L+ + + + V Y + ++ + R+ Sbjct: 942 IIERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAKLSVTEIKRI 1001 Query: 925 DVDA---AGVASVVEEPTLTPHQF---PRG---ASPGTFLHSLFEDLDFTQPVDPNWVRE 975 D S+ E L F RG A G +H + + LD ++ + ++E Sbjct: 1002 LNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSKDLSYRGIKE 1061 Query: 976 KLE-----LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEP 1030 +++ E Q + V I + PL + L A+ + E+ F++ IS Sbjct: 1062 QIKDMVKNEILTEEQAKEVDANKIERFFKTPLGK-----RLLKAKEVRREVPFHIKISSR 1116 Query: 1031 LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDS 1090 I L + ++ ++G ID F EG L+DYK++++ Sbjct: 1117 EIYRDLPEVYQE---------------EFIAVQGIIDCFFEEEGELVLIDYKTDYV---- 1157 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 + +Y +Q LY AL ++ + IYLF Sbjct: 1158 -----ENGKIEEIRDKYRVQIDLYGKALEEITGKKVKEK--------YIYLF 1196 >UniRef50_B5JHV0 UvrD/REP helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHV0_9BACT Length = 1170 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 336/1204 (27%), Positives = 536/1204 (44%), Gaps = 82/1204 (6%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 +G LIEASAGTGKT+ + + L+L L +T++ +L VTFTEAAT EL R Sbjct: 6 KGTTLIEASAGTGKTYRLCRIALQLTLQH--------GITLDRILAVTFTEAATEELASR 57 Query: 76 IRSNIHE-LRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 I+ LR + ++ L E L E D +A L + DEA + TIH FC+ Sbjct: 58 IQKLYQGCLRELETGDPKEDVLLECLKSEDFDVERAKNALRYSLEVFDEAPISTIHSFCK 117 Query: 135 RMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 R L L A E+ + +L + E L Q ++ R+H + + +E K + L Sbjct: 118 RCLELVALETQNPLDAELSQIEDDLIVQLQGEYIRQHILEASSAL-SLAYEAQKDFEKRL 176 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDR 254 ++I+R P P + ID++++++R+ L L++ S Sbjct: 177 KEISRQTSSHPDASLRPIPTPIS-----------IDSLERRFRELPEALSNLVDRSEEYL 225 Query: 255 RKFNRSNQA--KWIDKISAWAEEETNSYQLPESLEKF----SQRFLEDRTKAGGETPRHP 308 + ++ + + K + LP L S+ + + K+G + P P Sbjct: 226 KHLGKARKPAKQLSGKSPGLLACVKRGFLLPADLGWLGDFSSEAWSKAMNKSGQDLPLPP 285 Query: 309 LFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE 368 + ID +L + S +I + + R K++ + F+D+L L AL E G Sbjct: 286 VTALIDVVLDQIESAYLSLIYNYRPWLSGRLERAKQQANVISFNDLLHHLQRALTGEEGT 345 Query: 369 VLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIF 428 + + R+ A+IDEFQDTD Q +I R ++ H L IGDPKQAIY FRGADI+ Sbjct: 346 RIIEFLAGRYDAALIDEFQDTDRTQLKIARSLFGHGEH-YLFYIGDPKQAIYRFRGADIY 404 Query: 429 TYMKARS-EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 Y +A E + LD N+RSAP +V +VN LF + F+ I F V+S Sbjct: 405 AYFQATQGEGLRNEILDKNYRSAPKLVEAVNALFESSRAGFVDERISFRSVESGLDAADF 464 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 +++ +Y++ +A+ A L Sbjct: 465 SSEQPPFRIVQLRLE-NPSYPKSKSEYRNILAERAANDFAKRLNESPE------------ 511 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 ++A D+S LV R EAA + +AL I + ++R SVF+T EA ++ LL A+++P Sbjct: 512 -LKAEDVSFLVNDRIEAAALSEALLQRGISAAIHADR-SVFKTQEAIDLKQLLAALVSPA 569 Query: 608 RENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667 R + R A A L+A+ + + E+ V E + + W R L L+ Sbjct: 570 RTSLKRGACAALDHSLSAVSM-RSESFENRVAPVFEYITEWARDWHTRNFDVALHGLLRL 628 Query: 668 RNIAENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASSQQ 726 N E+ ERR +I + ELL EA + S L WL + S+ Q Sbjct: 629 LNSEESPSGGLDTERRHANICQLGELLSEARDAEELSPRGLYNWLCRKTEANVSHNEEWQ 688 Query: 727 MRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT--NFRVQEQAFYHDRHSFEAVLDLNAAP 784 R+ SD+ QI+T+HKSKGL++P V LPF+ R++E A + E ++D +P Sbjct: 689 TRISSDERKPQILTVHKSKGLQFPYVILPFLGLRRVRLKELASAYHGPEDELIIDYAPSP 748 Query: 785 E--SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL 842 + + A E LAED+RLLYVALTR+ + + P R + Q L Sbjct: 749 DSPASQHARREALAEDIRLLYVALTRAEHENLVYLCPEELSRTGDLACSSFAQFLLDE-G 807 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAWQTAQTG-------DNQPWQVNDVSTAELNAKTLQR 895 ++ A + + +A++ + + + +E N + R Sbjct: 808 ERTSSDAVAAQLHSLAEGSNGSLAFEQSPLDSSGFVQCEATDSHAETAAASENNLQNRAR 867 Query: 896 LPGDNWRVTSYSGLQQRGHGIAQD-------------LMPRLDVDAAGVASVVEEPTLTP 942 +P RV S+S L + H + ++ +A + + L+ Sbjct: 868 MPF-VERVLSFSALNKGMHRDEDENSIELLEQEESASDELNIEPEAELEQTEAQPLELSI 926 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDPNWV-REKLELGGFES-QWEPVLTEWITAVLQA 1000 P+G G LH + E DF++P + ++ + FE +EP++ I+++ +A Sbjct: 927 FTLPKGTHAGDLLHLILERFDFSRPETLSATTQQAFDALQFEPRDFEPIVAAQISSIAKA 986 Query: 1001 PLNE--TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPL-----SAGCPPL 1053 L T +L Q+S + E+EF P+S + ++ L L R G Sbjct: 987 NLKSQFTEFTLEQISPDRRIPELEFSYPVSGDVKSNILSALSRSDLGFIPTDWLEGLSHS 1046 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 E ML+GFIDLV H+ R Y+ D+KSN+LG + Y Q A+ +M H Y LQY L Sbjct: 1047 EAGLPASMLRGFIDLVLEHDNRLYIFDWKSNYLGPTPADYDQAAILESMGEHNYFLQYLL 1106 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFA 1173 Y +AL RY R +E FGGV Y+++RG+ + GI+ P+ L+ +DE Sbjct: 1107 YCVALKRYAEWRFPGKPFEESFGGVFYIYVRGISP-GKETGIFYDLPSPELLQALDEALY 1165 Query: 1174 GMTL 1177 G L Sbjct: 1166 GGVL 1169 >UniRef50_A1HTK7 UvrD-like DNA helicase, C terminal n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTK7_9FIRM Length = 1246 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 230/1311 (17%), Positives = 426/1311 (32%), Gaps = 244/1311 (18%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS+ + L+ A+AG+GKT + + +L P+ V+ LL Sbjct: 1 MSNWSPEQRAAIEARGQNLLVAAAAGSGKTSVLVQRIIDRILDKT------APVNVDALL 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT AA AE+R RI + K + ++L Sbjct: 55 VVTFTNAAAAEMRERIAQALT---------------------AELAKGERTRYLERQLLL 93 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQL--IEDESLLRYQACADFWRRHCYPLPRE 178 +++A++ TIH FCQ ++ + + + ++ + +LLR Sbjct: 94 LNQASISTIHSFCQSVVRQYFYRLDLDPQFRIAGEGETTLLRSDTLEALLAERYEQGDEA 153 Query: 179 IAQVVFETWKG----------------------PQALLRDINRYLQGEAPV---IKAPPP 213 +V P+ LR + + + Sbjct: 154 FLTLVDHYGDERDDSSLAGLILRLYEFARSQPWPEHWLRRLADAFRLDGAAGIGAPWEAL 213 Query: 214 DDETLASRHAQIVARIDTVKQQ-------------WRDAVGELDALIESSGIDRRKFNRS 260 + +A ++ + + + D G+LD I ++ R+ + Sbjct: 214 LADRIALELERLQHKFARLAAEAVRPGNPAAYVKTLEDDRGQLDWAIAAARHSWRELGAA 273 Query: 261 NQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP 320 + A + + + + +++ + P L + L Sbjct: 274 LNGLKFGTLPAAKGVDAAVCKRFQERRNTIKSKVKEIAERYFGRPEQELIADMRAQL--- 330 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE-------SGEVLAAA 373 + + + K+ +G + F D+ L ++ +A A Sbjct: 331 --PLVETLIDLVLAFGQRFQEAKKAKGLVDFSDLEHYCLQILLADNATPDNIQPSAVALA 388 Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKA 433 +R ++ ++DE+QDT+ Q I + ++GD KQ+IY FR A+ +++ Sbjct: 389 LREKYEEVLVDEYQDTNAVQETILELVSRPDRPNR-FMVGDVKQSIYRFRLAEPGLFLEK 447 Query: 434 RSEVH-------AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 + L N+RS PG++ +VN LFSQ E+ + ++ Sbjct: 448 YNRYPAAAGGSERRIDLAQNFRSRPGILAAVNFLFSQLMTP-RAAEMGYGAAEALNPGPD 506 Query: 487 LRFVFKGETQPAMKMWLME--------------GESCGVGDYQ----------------- 515 + +++ L+ + D Sbjct: 507 YPPCDQLTLAGPVEVHLINQAEAVAAAPAADVVEDEAEQQDADAGGDEPANSSELVTAQE 566 Query: 516 ----STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-AAQVRDA 570 A + A ++ +AG + RP+ DI +L+R+ Q A + D Sbjct: 567 LTAFEREAWLIARRLLALKEAGH--VVYDKHDKAYRPLAWRDIVILLRTVQGKAGVLLDV 624 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L IP+ + FE E Q ML LL + P ++ L L + ++GL A D+ Sbjct: 625 LRQAGIPAYADVDG-GYFEETEVQVMLSLLAVIDNPRQDIHLAGVLRSPLVGLTAGDLAA 683 Query: 631 LN--NDEHAWDVV-------------------VEEFDGYRQIWRKRGVMPMLRALMSARN 669 + D W + +E D +R + R+RGV ++ ++ Sbjct: 684 IRLCKDGDLWTALTAAAGADIAEPLRQKIGVFLERLDRWRSLARRRGVAELIWSIYRETG 743 Query: 670 IAENLLATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASSQQMR 728 + + GG R ++ + + ++ T +R+L + + + Sbjct: 744 YYDYIGGMPGGALRQANLRVLYDRARQFEATNFRGLFRFLRFLERLRDR--GSDMAVARA 801 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEA-VLDLNAA 783 L + +V++++IHKSKGLE+P+V L + QE H V+ + Sbjct: 802 LGEGEDVVRVMSIHKSKGLEFPVVVLADLGKQLNLRDTQELVLCHKELGLGPKVIRPDLR 861 Query: 784 PESVDLAE--------AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 LA E AE+LR+LYVALTR+ L + V Sbjct: 862 DSYPTLARWGIEHKLTLEAKAEELRILYVALTRAREKLILVGSVKKLADRCSDWCAMVGW 921 Query: 836 SALG-----------RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVS 884 A L G + AL D N WQV + Sbjct: 922 QAQALPDALITDAKNYLDWLGPAIVRHPGGAPLRALAGCDETPTAKLAALNAAWQVITHA 981 Query: 885 TAELNAKTLQRLPGDN------------------------WRVTSYSGLQQRGHGIAQDL 920 +N + + WR + + Q ++ Sbjct: 982 ADSINPVAPAQPADNPLAVCLKELKPLPGGDSAWVAARLDWRYPYAAAVGQPAKLTVSEI 1041 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQF------PRGASPGTFLHSLFEDLDFTQPVDPNWVR 974 R + +F A GT +H++ + L+ + + VR Sbjct: 1042 KRRFALADQDGEQWYPPRLAARPRFIQTAGKLTAAEVGTAMHTVMQHLNLAGDMSASGVR 1101 Query: 975 EKLELG-----GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISE 1029 +LE Q V E I A +PL + L+A ++ E+ F Sbjct: 1102 RELERLVAAEILLPEQAAAVDVEAIAAFFTSPLGQ-----RLLNAAWRRRELAF------ 1150 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 Q P ++ P L ++G +D +F L+DYK++ + + Sbjct: 1151 -----------CQVLPAASIDPALAGTDETVFIQGVVDCLFAEADGLILIDYKTDQVKDG 1199 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVI 1139 RYD+Q +LY A+ LR + + Y Y G ++ Sbjct: 1200 FE-----------LVERYDVQLKLYAAAMETILRQPVKEIYLYVFSTGQIV 1239 >UniRef50_Q65LJ9 ATP-dependent helicase/nuclease subunit A n=3 Tax=Bacillus RepID=ADDA_BACLD Length = 1230 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 221/1259 (17%), Positives = 420/1259 (33%), Gaps = 189/1259 (15%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + +R + RP+ V+ LLVVTFT A+ AE++ RI Sbjct: 26 ILVAAAAGSGKTAVLVERIIRKITDQ------ERPVDVDRLLVVTFTNASAAEMKHRIGE 79 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + +E +NP L +++A++ T+H FC +++ Sbjct: 80 AL-------EKELAENPGSLH--------------LRRQLALLNKASISTLHSFCLQVIR 118 Query: 139 LNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL-LR 195 + + ++ + + LL + + + ++V L L+ Sbjct: 119 KYYYLIDVDPAFRIADQTEGELLGDEVLDELFEEEYKKGNPAFFELVDRYTTDRHDLDLQ 178 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL--------DALI 247 + + + + P +LA + + ++ L Sbjct: 179 HLVKRVYEFSRSHPDPEGWLHSLAELYDAASDTKVEALPFYSYIKEDIALVLEGMRQKLT 238 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA-GGETPR 306 + + ++ + +A+ A + +L + R K G+ Sbjct: 239 RALDLTKQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELVPTVSFQRLKPCKGDEYD 298 Query: 307 HPLFEAIDQLLAEPLSIRD-------------------------LVITRALAEIRETVAR 341 L + L + + + + E A Sbjct: 299 PRLVDEAADLRNSAKKQLEKLKSDYFSRTPEQHLESLREMKPVIQTLVQLVLEYGRRFAE 358 Query: 342 EKRRRGELGFDDMLSRLDSAL--RSESGEVL----AAAIRTRFPVAMIDEFQDTDPQQYR 395 K+ + + F D+ + L ++ +GE + A R +F ++DE+QDT+ Q Sbjct: 359 AKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRHQFHEVLVDEYQDTNLVQEA 418 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-------HAHYTLDTNWR 448 I + + + E L ++GD KQ+IY FR A+ ++ L+ N+R Sbjct: 419 ILKLVAKEEHEGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTDDGSGSGQKIDLNKNFR 478 Query: 449 SAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507 S +++S N LF Q + E G + K E GE Sbjct: 479 SRSDILDSTNFLFKQLMGEKVGEVEYDEQAELKLGASYPPNEATKTELLLIETPSGAPGE 538 Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 + A+ A QIR + ++ + +R ++ DI VL+RS A Q+ Sbjct: 539 EAEELEAVQLEARAMAGQIRRLIT--EKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQI 596 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 D IP VY + FE E L LL+ + ++ L S L + ++GL+ + Sbjct: 597 MDEFKQQGIP-VYANLSTGYFEATEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENE 655 Query: 628 IETLN-------------------NDEHAWDVVVEEFDGYRQIWRK----RGVMPMLRAL 664 + + + + + FDG + WR V ++ + Sbjct: 656 LSLIRIKDKKAPFYEAMKAYLAAADGDERLSEKLRRFDGLLKKWRAYAKNHSVAELIWEI 715 Query: 665 MSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHILEPDSNAS 723 + + GG++R ++ + + + T +R++ + D + Sbjct: 716 YRDTKYLDYVGGMPGGKQRQANLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGT 775 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFE---- 775 ++ L + +V+++TIH SKGLE+P+V+ + + F Sbjct: 776 ARA--LSEQEDVVRLMTIHSSKGLEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFI 833 Query: 776 -----AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD 830 E L+E+LR+LYVALTR+ L + + Sbjct: 834 HPKWRISYPTLPLIAMKKKLRRELLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWR 893 Query: 831 TDVHQSA-----------------LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTG 873 T S +G L + D +G I+ + + +Q + Sbjct: 894 TQAAGSEWLLPDYERFQAKSYLDFIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLS 953 Query: 874 DNQPWQVNDVSTAELNAKTL-----------------QRLPGDNWRVTSYSGLQQRGHGI 916 E L Q W + R Sbjct: 954 AADLQAEAVDQAGEERHDRLVQIQMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQS 1013 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPR----------GASPGTFLHSLFEDLDFTQ 966 ++ + + + + P+ F R A GT +H++ + + T+ Sbjct: 1014 VSEMKRQKEYEDEYGDRSLIRPSQEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLTR 1073 Query: 967 PVDPNWVREKLELGGFESQWEPVLTEWIT--AVLQAPLNETGVSLSQLSARNKQVEMEFY 1024 + N + L+ + I +L E G L AR + E+ F Sbjct: 1074 TPEKNELSRLLDRLVEKELLTEDQRAAIEEDDILAFFDTEIGQKL--FGARRVEREVPFN 1131 Query: 1025 LPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 + +S + P LE +++G ID +F E +YLLDYK++ Sbjct: 1132 MTLSAKEV-----------------YPDLESADEPVLIQGIIDCLFETEDGFYLLDYKTD 1174 Query: 1085 WLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY-DYEHHFGGVIYLF 1142 + A + RY+ Q QLY A+ ++ + Y GG + LF Sbjct: 1175 RI--HGKYRNGFEGAEPILRKRYETQIQLYARAVETMIKMPLKGRALYFFD-GGHVLLF 1230 >UniRef50_A5GLW9 Exodeoxyribonuclease V beta chain n=2 Tax=Synechococcus RepID=A5GLW9_SYNPW Length = 1229 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 315/1277 (24%), Positives = 486/1277 (38%), Gaps = 172/1277 (13%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 +P R PL G RL+EASAGTGKTF +A L +RL+ R L ++ LLVVTFTE Sbjct: 12 FEPNRYPLNPGLRLLEASAGTGKTFALAHLVMRLV--------VERELKLDALLVVTFTE 63 Query: 67 AATAELRGRIRSNIHELRIACL---------RETTDNPLYERLLEEIDD---KAQAAQWL 114 AA ELR RI + L TD L E L E D + A L Sbjct: 64 AAADELRDRIGKRLDGALQGLLCLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLL 123 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 L A ++ A + TIHGFC+R L A +SG + + +D L + D WR Sbjct: 124 LEALEALERADITTIHGFCRRTLRRQALDSGRSMDLSVDDDPQTLVEEVAHDLWREQVLT 183 Query: 175 LPREIAQVVFETWKGPQALLRDINRY-------LQGEAPVIKAPPPDDETLASRHAQIVA 227 L + + ++ L ++ R + +A VI + Q Sbjct: 184 LDPDDVAGLLQSGLREDTLTAELLRLDGDCGVRIAEDAEVIDTETALRDVFPIWLEQRWL 243 Query: 228 RIDTVKQQWRDAVGELDALIESSGI-----DRRKFNRSNQAKWIDKISAWAEEETNSYQL 282 ++ + Q DA+ D + ++R+ + +S W + + ++ L Sbjct: 244 QVGELWSQDGDALERCLRDCAQDWHSLGCKDTKPYSRNPRKNRAALLSTWLQTKNDTQSL 303 Query: 283 PESLEKFSQRFL-----------EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 P + L + K G + P P E + + + Sbjct: 304 PIRYANVRNQDLLGTYYHPGVFAKTARKCGEDAPSLPRPELMRAIAELWDGPGEQTWRYL 363 Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 L + + + ++RRG +GF +L L+ S S + A+R R+ VA+IDEFQDTDP Sbjct: 364 LIRGLQEIDQRRQRRGVVGFSGLLDALNPTDPSRSQAWI-TALRERYKVALIDEFQDTDP 422 Query: 392 QQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAP 451 Q+ + + + LL++GDPKQAIY FRG D+ TY AR++V L N R+ P Sbjct: 423 LQWNLLHQCFASSDH-LLLMVGDPKQAIYRFRGGDLQTYKTARAQVDRIDDLLDNRRTTP 481 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGV 511 ++ ++N L S E+ V + K ET P + ++ G Sbjct: 482 PLMEAMNHLMSP---GLKHSELSVPAVSA--KASCTPLTLPPETAPLQILAFNPDDADGS 536 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 A D L +A + +D +LV ++A +RD L Sbjct: 537 RSRTDLEA-TIPCFAADLLLQILGNDAS---------LTPADFCILVSRHRQAEAIRDQL 586 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 + + +PS +S D V + A E+ W L + P LR A ++M A +E Sbjct: 587 SKVGLPSRLISPGD-VLSSQGAGELQWFLDGLARPADNERLRRLAAGALMQWPAHTLEA- 644 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 D+ + + + G+M L L+ E L + R L D+L + Sbjct: 645 CEQTGQLDLFAAKLQTLAEALPRLGLMGCLAQLLEG----ETLADLSIRGRLLGDLLQCA 700 Query: 692 ELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI--------- 741 L+Q+A Q + WL + L P N Q+ + Sbjct: 701 RLVQDAMHRQGLNAAGGADWLRRQRLHPPDNVPDQRQPYSD---------LAASAVAVVT 751 Query: 742 -HKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAV--------LDLNAAPESVDLAEA 792 H+SKGL+YP+V P++ + + + + + Sbjct: 752 VHRSKGLQYPVVICPYLWEAPSPGKGPLWRLPAGDPTGSWRVALNPHWGSGQAAACADAL 811 Query: 793 ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAG 852 + +AE RL YVALTR+ H L A G+ L L + Sbjct: 812 DCMAEAERLAYVALTRAERHLVLFSAGEANPSGN----------PLDPWLSALADGNHPH 861 Query: 853 LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQR 912 + +Q W + A + +W +SYS Sbjct: 862 ISLHH-----------PRSPAAHQRWTPPRQNQTLQCAPVPKGALDRSWGRSSYSAWIAS 910 Query: 913 GHGIA-------QDLMPRLDVDAAGVASVVEEPTL-------------------TPHQFP 946 +L DVDA S + EP + FP Sbjct: 911 ASNHHPSKRSNPHELEEGRDVDAGTDTSSLREPAVGLSSDVERELGDALPPRNGALRTFP 970 Query: 947 RGASPGTFLHSLFEDLDF----TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL 1002 RGAS G LH + E L F QP + V +L G + + + I+ +L++P Sbjct: 971 RGASAGDCLHRILEQLPFDQPVEQPANQELVARELSRSGLDLSLQDDVLSAISTLLRSPF 1030 Query: 1003 NET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM---- 1056 + L+ L + + E+ F LP++ A + TL R F ++ Sbjct: 1031 GGPLGQLRLADLHSGRRLHELSFDLPVAHAGSAVRASTLARAFRCDPKQRFGSDYAAQLE 1090 Query: 1057 ----QVRGMLKGFIDLVFRHEG-----RYYLLDYKSNWLGED----------SSAYTQQA 1097 RG L G IDLVF R+++ D+KSNW+GE YTQ A Sbjct: 1091 TLDIHSRGFLTGSIDLVFTDGDDLSTARWWVADWKSNWIGERDGEGQPLHCGPRHYTQAA 1150 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYT 1157 M M H Y LQ LY +ALHR+L+ R+ DY E H GG Y+FLRGV ++ G+ Sbjct: 1151 MEEQMLQHHYPLQAHLYLVALHRFLQWRLIDYSPERHLGGYAYVFLRGVSEQG-GSGVII 1209 Query: 1158 TRPNAGLIALMDEMFAG 1174 + ++ + G Sbjct: 1210 EPAPLQRLEHLNTLLQG 1226 >UniRef50_B5IMW6 Exodeoxyribonuclease V, beta subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMW6_9CHRO Length = 1248 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 330/1273 (25%), Positives = 509/1273 (39%), Gaps = 139/1273 (10%) Query: 4 VAETLDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + + PL+ G RL+EASAGTGKTF++A L LR + + + +LLVV Sbjct: 1 MTSRFEAHTFPLEPGLRLLEASAGTGKTFSLAHLVLRYV--------SEAEVPLRQLLVV 52 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETT--------DNPLYERLLEEIDDKAQAAQWL 114 TFT AA AELR RI + R D L L A L Sbjct: 53 TFTNAAAAELRDRIGQRLQTALGHLDRGEAAVETGNPVDPSLEAWLQWARPRAALLRAPL 112 Query: 115 LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 LLA +D A + TIHGFC R L A E+G E QL D + L Q C D+WR+ Sbjct: 113 LLALEDLDGADITTIHGFCLRTLQRQALEAGQPPELQLDSDAAPLVRQVCHDYWRQQVLA 172 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD----DETLASRHA-QIVARI 229 LP + V KGP+AL+ D+ + L G+ + P PD D+ LA + +R Sbjct: 173 LPPHLLDGVQRLVKGPEALV-DVLQTLDGDPALAVDPLPDGMEADQPLAPQLESLWQSRW 231 Query: 230 DTVKQQWRDAVGELDALIESSGIDRRK--------FNRSNQAKWIDKISAWAEEETNSYQ 281 D + W+ L+A + ++ R ++ + +S W + + + Sbjct: 232 DRFQLLWQQHGEALEAELRAAAGHWRDLGASKTTPYSPKPRKDRCQALSQWIQHQGSKGD 291 Query: 282 LPESLEKFSQRFLEDRTKAG-----------------GETPRHPLFEAIDQLLAEPLSIR 324 + Q+ L++ G P P ++ + Sbjct: 292 YAAT---LEQKELKEYFHPGAFLKVARPIEATASGPAAREPSLPQRPLLEAVADLREGPA 348 Query: 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMID 384 + V+ A R +A + R+G +G+ +L LD E+ L A+ R+ ++D Sbjct: 349 EAVLLHAAHWGRRELAHRRERQGRMGYGQLLESLDPGDDPEAPCPLLDAVGERYSAVLVD 408 Query: 385 EFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA---HY 441 EFQDTDP Q+RI R + + L+L+GDPKQAIY FRG ++ TY A + A Sbjct: 409 EFQDTDPIQWRILSRAFDARRHR-LVLVGDPKQAIYRFRGGELATYRLAYRQAAADGGIS 467 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKM 501 LDTN+R+ P ++ +N L + +P + + + G+ + Sbjct: 468 RLDTNYRATPSLIAGLNALMAPGLPRSGL-AVPPVQPPPSPSGWSAPGGEGGDAPTLSLL 526 Query: 502 WLMEGESCGVG-----DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 WL G + + A + ++ G+ +D+ + Sbjct: 527 WLGSDRPAGEAPPTTSAVEQELPDRVARLVAAEIRTGEA---------------PADLCL 571 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 LV + ++A Q+R AL I S +S+ D VF + A + LL + P LR Sbjct: 572 LVSTHRQAGQLRVALARAGIASRLVSDGD-VFASDGATALQRLLDGLAHPGDPRRLRLLA 630 Query: 617 ATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 A+ ++G +A W + E+ R + G++ +L AL+ +A L Sbjct: 631 ASPLLGWSAG--AIAAAGAEQWSALSEKLLRGRDGLPRLGLLGVLAALLDDEGLAR--LG 686 Query: 677 TAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASS-QQMRLESDKH 734 G R L D+ + LLQE T A WL Q L PD + Q + + Sbjct: 687 LEG--RVLADLNQCALLLQERIHTDQLGADAAAEWLRQRRLAPDPSPPESHQPNSDVEDE 744 Query: 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQE----QAFYHDRHSFEAVLDL------NAAP 784 V +VT+H+SKGLEYP+V P++ + VLDL Sbjct: 745 AVWVVTVHRSKGLEYPVVICPYLWKAPHANPRGLGLRWQPSDRTGPVLDLHLGSRWGRGH 804 Query: 785 ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ- 843 ++++ A L E R YVA TR+ L P+ + G+ + A Sbjct: 805 QALEQHRAAELQEAERRAYVACTRAKRRLLLAWGPVKGQAGNPLHPWLLAAQAALADADD 864 Query: 844 -----KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRLP 897 +G+ + L + A + P + +T L QR Sbjct: 865 DPYATQGDGELRQALELGLAARQVPMVLMTVPPAAGPLPGRPPATATEPLTLGPVPQRRL 924 Query: 898 GDNWRVTSYSGLQQRGHGIAQDLMPR-----LDVDAAGVASVVEEPTLTPHQF---PRGA 949 +W +SY+ + H A + +A+V +EP PRG+ Sbjct: 925 DHSWGRSSYTSWTRGSHAAAPQALEEGRETDALAREPELAAVDQEPWPGESPLADIPRGS 984 Query: 950 SPGTFLHSLFEDLDFTQPVDP--NWVREKLELGGFESQWEPVLTEWITAVLQAPLNET-- 1005 G LH + E LD+ +P VR +LE G + + + +P+ Sbjct: 985 RAGDCLHRILESLDYQRPATQQSEAVRRELERSGIGRDHLEDVLSGVERLRLSPMGGPLG 1044 Query: 1006 GVSLSQLSARNKQVEMEFYLPI----SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 L+ L ++ EM F L + S+ L D F A +Q RG Sbjct: 1045 DFRLAGLERGSRINEMNFDLTLGPVTSDSLARPFRDHPGGSFGAGYADQLAALSVQGRGF 1104 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA----------YTQQAMAAAMQAHRYDLQY 1111 L G IDLVF H+GR+++ D+KSNWLGE + Y A+AA M A+ Y LQ Sbjct: 1105 LTGSIDLVFCHQGRWWVADWKSNWLGERGADGQPLHCGPRHYGAAALAALMAANHYPLQA 1164 Query: 1112 QLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK------EHPQQGIY-----TTRP 1160 LY +ALHRYLR R+ YD H GG Y+FLRG+ + + +G P Sbjct: 1165 HLYLVALHRYLRWRLRGYDPARHLGGYAYVFLRGLAEPSEALRQRAGEGAVLPGLAVECP 1224 Query: 1161 NAGLIALMDEMFA 1173 + +D Sbjct: 1225 PLERLLALDRALN 1237 >UniRef50_B0RMH9 Exodeoxyribonuclease V beta chain n=8 Tax=Xanthomonas RepID=B0RMH9_XANCB Length = 1372 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 335/1151 (29%), Positives = 510/1151 (44%), Gaps = 109/1151 (9%) Query: 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLN 140 + A T L L + + + L A ++D AA+FTIHGFC R+L + Sbjct: 142 PHAQDAPDAILTRAILTAHLATGTETPSALRRRLQQAVEEIDLAAIFTIHGFCARVLREH 201 Query: 141 AFESGMLFE-QQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINR 199 A ESG F QL+ ++ L + AD WR+ +V GP AL D+ Sbjct: 202 ALESGQAFAAPQLLANDRELLGEVAADLWRQRAADAAMA-DDLVALWPAGPTALASDLRA 260 Query: 200 YLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNR 259 +Q + P + +R A A + ++ A + A E D R+ R Sbjct: 261 LVQQPELLPAVAAPTPDPQPARQAAAQAVVAALRAHGDAAYDAVAAAFEHKIFDGRRARR 320 Query: 260 SNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGET--PRHPLFEAI---- 313 + K +++ + E L+K + L + K G P PLF+A+ Sbjct: 321 PSFDKAFEQLWQGSAEAHWVLDDGGHLDKLLPQRLREFCKDGAHDRVPCSPLFDALAVWQ 380 Query: 314 --DQLLAEPLSIRDLVITRALAE-IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVL 370 D ++ + R + + AL + +A+ KR+R +DD++ + AL+ E L Sbjct: 381 QADAVVRQWEGQRRIRLLHALRDDAVLQLAQRKRQRRVQTYDDLVDGVARALQGPQAEAL 440 Query: 371 AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQ-----------------------PET 407 +R ++ +A++DEFQDTD +Q++IF R++ + P Sbjct: 441 VQRLRAQYAIALVDEFQDTDDRQWQIFSRVFGPEHAASGEAFAPDDDADFDNAAGAPPPR 500 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQT--D 465 L LIGDPKQAIY FRG D+ TY+ A + L+ N+RS PG++ +++ L++Q Sbjct: 501 LLALIGDPKQAIYGFRGGDVQTYLAAATTAQRAPPLEHNFRSRPGVLAAIDALYAQAGYA 560 Query: 466 DAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC---------GVGDYQS 516 +AF+ I F PV+ K + G PA+ +W G + Sbjct: 561 EAFLTEGIAFHPVQPGTKRSDADLLRDGAAAPALTLWRAPAPPPPEKGKPKPWSAGRARE 620 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 C A IR WL G+ G A + RPV+A DI+VLVRS EA +++ AL + I Sbjct: 621 LCTAACVAAIRGWLAGGRDGSASIN----GRPVQAGDIAVLVRSHGEATRIQQALGAVGI 676 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH 636 P+V + S+F T EA E+L LLQA++ P ++ LR+ALAT ++G +A I L +D Sbjct: 677 PAVAA-GKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAAAIAALEHDGE 735 Query: 637 AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE 696 ++ +R+ W++ G + ++ L + + LLA GERRLT+ L ++ELLQE Sbjct: 736 RHRRWQQQALDWRERWQRGGPLALVGDLGATHG--QRLLALVDGERRLTNYLQLAELLQE 793 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 A T+ H LV WL++ I D N +QQ+RLESD VQIVT+HKSKGLEYPLV+LP+ Sbjct: 794 ADTRALGPHGLVDWLARRIANADDNDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPY 853 Query: 757 ITNFR-------------VQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 I R H S + D + + + E+ AED RLLY Sbjct: 854 IGIGRADKSPGRHCVVHAPPHGRQLHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLY 913 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 V LTR+ + + ++AL +L+ A+ Sbjct: 914 VGLTRAEHALWIATGAFHQHE----------RTALAPMLRDPAALQAS--------AGAG 955 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR 923 IA P D + A+ QR +W V S++ L G Sbjct: 956 VIALDDTAPPATLPRLPADDAVQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMASAT 1015 Query: 924 LDVDAAGVASVVEEPTLTPHQFP------RGASPGTFLHSLFEDLDFTQ----------- 966 L EP P + G G +H +FE DF Sbjct: 1016 LASSGGSDEPPASEPVSAPAEVEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQPAP 1075 Query: 967 PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN---ETGVSLSQLSARNKQVEMEF 1023 + E L+ GG+ +T ++ L G L+ + ++ EMEF Sbjct: 1076 EGQAAAILEALQRGGYAQDELDDGLAMLTRLVGHTLTVTLPEGTCLAAVPEPQRRNEMEF 1135 Query: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 + + P L L+ +F ++ ++ G++ G IDL + +GR+Y+LDYKS Sbjct: 1136 HFAM-RPTRVDALLALLHRFGVVTERQAFGARQRLEGLMTGLIDLTYCADGRWYVLDYKS 1194 Query: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHFGGVIYLF 1142 N L AY A+A AM Y+LQ +YT+ALHR+LR R+ YDY FGGV YLF Sbjct: 1195 NRLP----AYDPDALARAMAHSEYELQALIYTIALHRWLRFRLGASYDYARDFGGVRYLF 1250 Query: 1143 LRGVDKEHPQQ 1153 RG+D Sbjct: 1251 CRGLDAARNPA 1261 >UniRef50_D2EH37 Recombination helicase AddA n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EH37_PEDAC Length = 1238 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 225/1296 (17%), Positives = 442/1296 (34%), Gaps = 229/1296 (17%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + + L+ ASAG+GKT + ++ ++ V+ LLV Sbjct: 5 TYTPSQQQAIDSS-GHNILVSASAGSGKTSVLVERVIQKIINGE---------DVDRLLV 54 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFTEAA AE++ RIR+ I + A L L ++ Sbjct: 55 VTFTEAAAAEMKERIRAAIMKKISEVKD------------------ADLQNHLSLQLGKL 96 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE-DESLLRYQACADFWRRHCYPLPRE-- 178 + A + T+H FC ++ + + ++++ ES L + R Y + Sbjct: 97 NNANISTLHAFCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQVWADLREELYESDEDGQ 156 Query: 179 ----------------IAQVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDE 216 + +++ + + P+A L I + + + + Sbjct: 157 FARLTRNFSNDRSDAGLQELMLDLFEFANANPDPEAWLTKIANNYEVQTDQVMEMDFVKQ 216 Query: 217 TLASRHAQIVARIDTVK----------QQWRDAVGELDALIESSGIDRRKFNRSNQAKWI 266 LA Q++ T + + A A + +F++ N Sbjct: 217 ILAKIKTQLIQIYQTDLNLTERAINGGEPLQKAAANFQAEVAGLKTVIDQFDQPNWDALQ 276 Query: 267 DKISAWAEEETNSYQLPESL-EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD 325 + + + + PE + L + KA F+ + L Sbjct: 277 QAMVNFKFAQLPRGKKPEVQEFNLEAKPLRNEFKAEFNGLVERYFKLKNDQLIAIFKDAR 336 Query: 326 LVITRAL---AEIRETVAREKRRRGELGFDDMLSRLDSALRS--ESGEVLAAAIRTRFPV 380 ++ + + + + +EK R L F D+ L++ E G+ + + +F Sbjct: 337 EIMLKLIEVQQQFSDRFLQEKLTRRSLDFSDLEHFALQILQNQSEEGQAVRRNFQEKFNE 396 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--- 437 ++DE+QD +P Q I + P + ++GD KQ+IYAFR AD ++ Sbjct: 397 VIVDEYQDINPLQETILTAVAREDPG-NMFMVGDVKQSIYAFRMADPSLFISKSRRFKQS 455 Query: 438 ---HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 L N+RS + + N +F+Q D + I + + + + E Sbjct: 456 GQPDERIILAENFRSMQNVDDFTNLIFNQIMDQAVGE----IAYDADAQLKFGAKYYPAE 511 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMA----------QVCAAQIRDWLQAGQRGEALLMNGD 544 Q ++ L + + Q A Q+ A +I+ + E + Sbjct: 512 VQNDTEVLLFDDQQNENTADQEPGAIITDKNDGQLQMIAQRIKRLFAD--QTEVFDRDTQ 569 Query: 545 DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 + RP++ SDI++L + + D IP + +SN F+T E M+ LL+ + Sbjct: 570 EMRPLKYSDIALLHSTGNNNLNIVDTFKKYGIP-IEVSNAQDYFQTTEVSIMMALLKIID 628 Query: 605 TPERENTLRSALATSMMGLNALDIETLN-----------------------------NDE 635 P ++ L + L + ++GL+ ++ L N + Sbjct: 629 NPYQDIPLAAVLRSPIVGLDENELAFLRISKKNGHYFESVLYFQNEFKIDYQNEFQANLK 688 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ 695 D + + +R++ ++ ++ +L + + + G +R ++ + + Q Sbjct: 689 RKIDQFLAQLQHFRKLSQQCTLVDLLWEIYQETGYLDYVGGMPDGPQRQNNLHALYDRAQ 748 Query: 696 -EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 + + VR++ + + N + + +D V+++TIH SKGLE+P+V+L Sbjct: 749 SYEESSFKGLFQFVRFVEKMR---EKNKDLAENPVVTDTEAVKLMTIHSSKGLEFPIVFL 805 Query: 755 PFITNFRVQ---EQAFYHDRHSF----------EAVLDLNAAPESVDLAEAERLAEDLRL 801 + + + DR + +D +D+ + + LAE+LR+ Sbjct: 806 IDADHGFNNSDTKGRYVLDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRV 865 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC----- 856 LYVALTR+ + A +K L LL + E A Sbjct: 866 LYVALTRAQQKLIVTGALKAATPTLEKWAQAADTGEL--LLPEAERGKAKNFLDWIGMAI 923 Query: 857 -----------------IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR---- 895 +++ ++ + D Q +D + TL++ Sbjct: 924 MRVPSVMENYPEVSSRKLDSFAGVEVKLKVVNRADLLAGQRSDTGIEQGTPPTLEKMDVN 983 Query: 896 --------------------LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG----- 930 S S +++ + M VD Sbjct: 984 SDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPDKLEMDFSAVDRDQKIRPQ 1043 Query: 931 ----VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQW 986 ++ ++ P+ GT H + + LD +PV +++K+ Sbjct: 1044 KRFVTDQLMTPRFMSEVSQPKPTEIGTATHLILQQLDLREPVTQAVIKDKIRELVMNQVL 1103 Query: 987 EPVLTEWIT-----AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 E + + I ++ L + ++ E F L + Sbjct: 1104 EEAVAKRIRINSILDFFESELGQLMLA----HPEQVHREEAFSLLLP------------- 1146 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 + G P ++ G ID F +GR LLDYK++++ S QQ + Sbjct: 1147 -----AKGLFPNVVGNQDVLIHGIIDAYFELDGRVILLDYKTDFVLPGSP---QQGIQKV 1198 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFG 1136 + RY Q LY AL L + + Y Y G Sbjct: 1199 I--DRYQGQVNLYAQALSNILGKPVNEKYLYLLSIG 1232 >UniRef50_B5CQ86 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQ86_9FIRM Length = 1256 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 227/1301 (17%), Positives = 442/1301 (33%), Gaps = 238/1301 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + + P+ V++LLVVT+TEAA AE++ R Sbjct: 17 DRNILVSAAAGSGKTAVLVERIISRITDE------KNPVDVDKLLVVTYTEAAAAEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I + L + A + T+H FC Sbjct: 71 IAAAIEKKLEEFPGNLN---------------------LEQQASLIHSAMITTVHKFCLS 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGP-QA 192 ++ + G+ ++ E+ L L+ + H E + V + G Sbjct: 110 VIRDHFHVIGIDPSFRVGEEGELRLLKQDVLDEMLEEHYAKDEEEFREFVEKYGTGRTDK 169 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID------TVKQQWRDAVGELDAL 246 + ++ L + P + A + ++ TV+++ R +G+L L Sbjct: 170 KIEELILQLYEYSRSYPDPRQWLISCAEDYEIDREHLEDSRMVHTVEERVRQQLGDLYGL 229 Query: 247 I-----------------ESSGIDRRKFNRSNQAKWIDKIS------AWAEEETNSYQLP 283 + E+ D ++ + +A +K+S W + + Sbjct: 230 VRQAMEICQLPAGPYMYAEALESDEKELKKLERADSYEKMSEVLMDFNWKKLSGKKDETV 289 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEPL--SIRDLVITRALAEIRETVA 340 ++ + S + + + KA + + F D+ +A+ + +T + E + Sbjct: 290 DAELRKSVQAVRKQLKALIDGIQKSYFYATADEWVADMQDSAQAMRTLTGLVQEFADRFD 349 Query: 341 REKRRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 +KRRR + F DM + L + +A + RF M+DE+QD++ Q Sbjct: 350 EKKRRRNMIDFSDMEQFALAILTRNTEGKIVPSAVAEEYQERFAEVMVDEYQDSNLVQET 409 Query: 396 IFRRIWHHQPETA-LLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNWR 448 I + + ++GD KQ+IY FR + +M+ L N+R Sbjct: 410 ILTSVSGMSKGRNNMFMVGDVKQSIYRFRLSRPELFMEKYDTYSVESSPCQRIDLHKNFR 469 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES 508 S +++S N LF + + ++ + + Sbjct: 470 SRKEVLDSTNYLFEKLMFREFGGIEYDENAALYAGAEFPPIPEDAVFTDKTEVLIFNQQD 529 Query: 509 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-RQEAAQV 567 D + A++ A +IR+ + +G D R ++ DI +L RS + A Sbjct: 530 MKARDAKEAEARMIARRIREMMGSG---YIYDKGSDSFRKIQYKDIVILTRSIQGWAESF 586 Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627 L IP+ +S R+ FET E +L L+ + ++ L + L + +GL+A + Sbjct: 587 SAVLAEEGIPAYSVS-REGYFETYEISVLLDYLRILDNARQDLPLTAVLTSPFVGLDAEE 645 Query: 628 IETLN------------------------------------------------NDEHAWD 639 + + + Sbjct: 646 LAQIRLAYPNLPFYESVWLCGEEKTEETGADGSGETGEKEKKEKKKSDAEAENRSGEISE 705 Query: 640 VVVEEFDG-------YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE 692 V E+ +R I + +L ++ + A GGE+R+ ++ + E Sbjct: 706 AVREKLAEFTRQVRYFRSILSYTPIHDLLAKILEETGYRTFIAAMPGGEQRIANVEMLIE 765 Query: 693 LL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 GT + VR++ Q L+ + + ++ V++++IHKSKGLE+P+ Sbjct: 766 KACAFEGTSYKGLFNFVRYIEQ--LKKYNVDYGEAGIMDEQADTVRLMSIHKSKGLEFPI 823 Query: 752 VWLPFITNFRVQEQ-----AFYHDRHSFEAVLDLNAAPES--------VDLAEAERLAED 798 V++ + + + D +DL ++ + + E L+E+ Sbjct: 824 VFVAGMGKSFNMQDQRGSIVIHPDWGIGIDAVDLEQRTKNPTFLKRMIQEKTKLENLSEE 883 Query: 799 LRLLYVALTRSVWHCSLGVAPLV---------------RRRGDKKGDTDVHQSALGRLLQ 843 LR+LYV +TR+ L + +R + + +L Sbjct: 884 LRVLYVGMTRAKEKMILTGTAKLGEEELLALEMMEDIIKREEKQNSWKADEKDSLALYQM 943 Query: 844 KGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV 903 +G + + W + + + + A+ L R ++W Sbjct: 944 EGAKTCFDWILPALMRDWKKAEKWIQVRLVTREELSYGAATAGQ--AEVLAREVLEHWDT 1001 Query: 904 -----------------TSYSGLQQRG---HGIAQDLMPRL-------DVDAAGVASVVE 936 +Y LQ+ +L R+ ++ G + + Sbjct: 1002 EKSYMPEWKELLSEQMNYTYPYLQEEQMKLKFTVSELKKRIYAGEQMREMQEDGGEELYQ 1061 Query: 937 EPTLTP---------HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWE 987 EP + P + GAS GT H L E LDFT+ ++ + + + Sbjct: 1062 EPEIVPLVPGFMQDQKEGLTGASRGTAYHKLMELLDFTRQYTEAALKNAVHDFEKKKKMT 1121 Query: 988 PVLTE--WITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFD 1044 + I+ +L + +G +S + + K E F L + + Sbjct: 1122 LEMAACIRISDILLFLESSSGKRMSAAAGKGKLWREQPFVLGVDADQVYPGFSG------ 1175 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 1104 P + +++G ID F E +LDYK++ + A Sbjct: 1176 ------EPGSQEKEVILVQGIIDAYFEEEDGIVVLDYKTDKVKS-----------AEQLK 1218 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF-LR 1144 RY Q + Y AL L + + +IY F LR Sbjct: 1219 ERYHAQLEYYAQALEGLLEKPVKEK--------IIYSFTLR 1251 >UniRef50_Q0TV46 ATP-dependent helicase/nuclease subunit A n=12 Tax=Clostridium RepID=ADDA_CLOP1 Length = 1271 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 202/1319 (15%), Positives = 424/1319 (32%), Gaps = 244/1319 (18%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + E + + L+ A+AG+GKT + ++++ P+ +++LLV Sbjct: 3 TKWTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEG------ENPVDIDKLLV 56 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT AA +E+R RI I + +K +++ L + Sbjct: 57 VTFTNAAASEMRERIGDAISKAL---------------------EKDPSSEALQRQLALL 95 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREI 179 + A++ T+H FC ++ N + ++ + + L++ AD + Sbjct: 96 NRASITTMHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQDILADLFEDMYAKDDECF 155 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQI----------VARI 229 +V ++N + I + P + L + + I Sbjct: 156 KDLVEAYGGSKSD--DNLNSIILKFYNFIMSGPWPETWLKDKVEEFNINSIEELEGKKWI 213 Query: 230 DTVKQQWRDAVGELDALIESS---------------GIDRRKFNRSNQAKWIDKISAWAE 274 + +K+ + +++ + I + + Sbjct: 214 EVLKESIILDLNNAYSMLTQARDIAEMGGGLEPYLVNIYPEIIQVEELRIALSEGIVKFY 273 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLS------------ 322 + ++R ++ R + I+ L Sbjct: 274 NKLMGASFGRLKSVRKASVDDERALEKAKSLRDESKKIIENLRDNVFETSLEEAVLGMKK 333 Query: 323 --IRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAI 374 ++ + E +KR + L F+D+ L + +A Sbjct: 334 MYPLMKCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEF 393 Query: 375 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKA 433 + +F ++DE+QD++ Q I + E + ++GD KQ+IY FR A+ +++ Sbjct: 394 KDKFEEVLVDEYQDSNTIQETIVGMVSRRDVENPNVFMVGDVKQSIYKFRQANPELFLEK 453 Query: 434 RSEV------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV--------- 478 + L N+RS ++N VN +F + Sbjct: 454 YINYREFEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALNLGASYG 513 Query: 479 ---KSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ-------------STMAQVC 522 + + + + + + +++ ++ A++ Sbjct: 514 ELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKEYRDDDELGEEEEDLDSIQLEARII 573 Query: 523 AAQIRDWLQ--AGQRGEALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSV 579 +I++ + G + R ++ DI +L+R ++ A D L IP V Sbjct: 574 GKKIKELMNPEDGSHYMVFDKDLGKYRRIKYKDIVILLRATKNWAETFVDELGTYGIP-V 632 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEH 636 Y F+T+E + +L LL + P ++ + SAL + + + + L D++ Sbjct: 633 YADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADLRLLNKDKY 692 Query: 637 AWDV-----------------------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 +++ ++ + +R+ + + L S + Sbjct: 693 FFEIIKEVVDGIYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLYSDTSYYGY 752 Query: 674 LLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 + G +R ++ + + Q T + + ++++ L+ S L + Sbjct: 753 VGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINK--LKKSSGDMGSAKILGEN 810 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ----EQAFYHD---------RHSFEAVLD 779 +++V+I++IHKSKGLE+P+V L + E H+ D Sbjct: 811 ENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVKKRIKYD 870 Query: 780 LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL- 838 E E L+E++R+LYVA TR+ + A + + S Sbjct: 871 TLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENWCKASASSGDN 930 Query: 839 -----------GRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 L I + + DI T D W +E Sbjct: 931 RINPGNVLKGKSYLDWICMALTKHKDGDAIRNIGNGDI---TLNLDDKSNWSFKSWDRSE 987 Query: 888 L-----------------------NAKTLQRLPGDNWRVT---------------SYSGL 909 L + K ++ + R+ S + L Sbjct: 988 LLETNNNKKEKNNIDIFESNNWIESKKDIKEVIEIRDRLGFKYKYIESCNTPSNISVTEL 1047 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP-------RGASPGTFLHSLFEDL 962 ++ +D +E +F A GT H + + + Sbjct: 1048 KRAHQEEEFMQESYNIIDNESNEENKKEKIKRKPRFMEERQEEFSAAKKGTITHFVMQHI 1107 Query: 963 DFTQPVDPNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNK 1017 D + + +RE++ E + + V I ++ L + ++ S S + Sbjct: 1108 DLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKIQKFFKSDLGQRMLN-SYKSGKKV 1166 Query: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 E+ F I +I LD P + + + L+G ID F E Y Sbjct: 1167 YRELPFITEIPSSIIEKNLD--------------PKIYGEEKVRLQGIIDAFFEEEDGYV 1212 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 LLDYK++++ E ++Y +Q LY L++ L + + Y Y + Sbjct: 1213 LLDYKTDYVKEG---------EEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYL 1262 >UniRef50_D0SDD3 Exonuclease subunit V n=2 Tax=Acinetobacter RepID=D0SDD3_ACIJO Length = 1250 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 301/1272 (23%), Positives = 511/1272 (40%), Gaps = 145/1272 (11%) Query: 1 MSDVAE------TLDPLR-LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRP 53 M+ ++ + P+ + QG IEASAGTGKTFT+++L +R+ LG Sbjct: 1 MTAQSQVSTSNMSYQPITDMSFQGLHWIEASAGTGKTFTLSSLMVRIFLGAYL------- 53 Query: 54 LTVEELLVVTFTEAATAELRGRIRSNIHELRIACLR-------------ETTDNPLYERL 100 +++ TFT AA AEL+ R+R+ + E +PL+ ++ Sbjct: 54 --PNQVIATTFTRAAAAELKSRVRARLIETLRYFEGCQSLTEREIQAKIAAEQDPLFTKV 111 Query: 101 LEEIDDK-AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL 159 L + + A + L L Q+DE V T+ F Q++L +FESG + + +D Sbjct: 112 LTDYAQRVGFAQERLKLVIDQLDELFVGTLDSFSQKLLREFSFESGKIERADITDDAQSY 171 Query: 160 RYQACADFWRRHCYPLPREIAQVVF--ETWKGPQALLRDINRYLQGEAPVIKAPPPDDET 217 Q D R P+ + + + K QA + + L + + Sbjct: 172 TQQLIHDVLREWIQAQPQPVVNYLLLKQKLKTEQAYVPIVENSLNFASAQFQQVEKPTLD 231 Query: 218 LASRHAQIVA-------RIDTVKQQWRDAVGELDALIESSGIDR--RKFNRSNQAKWIDK 268 L I +I+ +K + L + D ++ + ++ Sbjct: 232 LTQFEQAIDQFTTLDVVQIEGLKDYYAPEGQYHAVLGKKWRTDALIQRILCQDLPAFLTA 291 Query: 269 ISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPL------------FEAIDQL 316 + + ++L+ + + EA+ +L Sbjct: 292 LKEQRAYALFAPHFEKTLKHLTDLATKKVLNKCAVDVLEQFEQHPVWRQVRSFLEALAEL 351 Query: 317 LAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRT 376 + + +E+++ + + +++ E F + L AL+ E G A ++ Sbjct: 352 ELNLDVLDAYLKYHLSSEVKKRLPQVLQQKSETTFAQQIRTLSEALQGEQGRRFAQFVQA 411 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKA 433 R+P+ ++DEFQDT+ Q + RIW ++++GDPKQAIY FRG D+ TY KA Sbjct: 412 RYPLILVDEFQDTNQDQDDMLARIWRDVQRYHQGCMIMVGDPKQAIYGFRGGDMLTYNKA 471 Query: 434 RSEV----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF 489 R +V Y+L N RS +V V+ LF + D ++ + PV++ + Sbjct: 472 RLDVLAKHGRQYSLKYNHRSVQKLVQVVDALFQRQQD--FGEQVYYQPVEAGTRPHPALV 529 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 +GE ++ L+E + AQ A +IRD + G + + + + D + + Sbjct: 530 DAQGENHVPLRWLLLEDK--------KNEAQQVAWKIRDLINQGIQQQLYVAD-DPLQFI 580 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 A+DI+VL ++ +V+ L L I V ++ SVFE+ A+++ LL A+M P E Sbjct: 581 GANDIAVLSKNHDGLDKVQFELERLGI-LVNRPSKRSVFESQVAKDVGALLTAMMHPFDE 639 Query: 610 NTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARN 669 +R AL + ++ ++ + L + + +FD R +W +G + + ++ Sbjct: 640 AKVRRALLSRLLAIDLKQLLELEKQANGLSQFMADFDDIRDMWINKGFLSAWQYALNLFK 699 Query: 670 IAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 + +NL+A + ER + ++ H++ELL + Q + L W + + P + Sbjct: 700 VWKNLVAYQSRDNERTVVNLRHLTELLSQHSEQFQGAQKLYHWYLKQLHLPAEREWELER 759 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLN------ 781 +L S+ VQ++TIH+SKGLE+ +V+L + + + Sbjct: 760 KL-SNATGVQLMTIHQSKGLEFKIVFLLGADKDFKEMNKTLNFSTLEQINPTTGQSELQR 818 Query: 782 ---------AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 P ++D AE RL YVALTR+ A L + Sbjct: 819 IVAVNDANLLDPAAIDQHNERAEAEQHRLWYVALTRASHRVY---ALLQDQEYKSNTALT 875 Query: 833 VHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKT 892 + G L + + L + I Q A+ + +L A Sbjct: 876 FWRGQAGNLFEHPASGNEVLL-------TEKPIRLQPAEHQEI----------IQLQALA 918 Query: 893 LQRLPGDNWRVTSYSGLQQR-GHGIAQDLMPRLDVDAAGVASVVEEPTLT---------- 941 TS+S L Q A D + L + P L Sbjct: 919 FPEQRFYPRSKTSFSALAQHLSRREAMDALAVLSEKVGSADDEINHPVLEDVELIQPLAW 978 Query: 942 -PHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVL---------- 990 QFP G + GTFLH +FE +DF D + W+ +L Sbjct: 979 IKRQFPMGTTAGTFLHEIFEHIDFQDSGDWGLEIHRRFKNDSPLLWQELLGKYQNEFGQD 1038 Query: 991 ---------TEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 W+ VL+ PL G L QL A E FYL +S+ ++A + + Sbjct: 1039 DETQLVLWMQAWLADVLETPL-HAGFQLKQLKADEHLAEFPFYLSLSDHVLA--IKRIQT 1095 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 F L L G IDLV+ RY++ DYKSN+LG D +Y A+ Sbjct: 1096 LFQEYGIDLLDLNEANSARYLTGSIDLVYFDGQRYHIADYKSNFLGADQQSYNHDAIELN 1155 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPN 1161 M Y LQ LY +ALHRYL+ + DYD E H G YL+LRG++ + P QG+ + R + Sbjct: 1156 MSHASYWLQAGLYLVALHRYLKVNLLDYDIEEHLGQASYLYLRGMNGQ-PDQGVLSWRAS 1214 Query: 1162 AGLIALMDEMFA 1173 I +D + Sbjct: 1215 PEFILRLDAILG 1226 >UniRef50_Q46K42 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Prochlorococcus marinus RepID=Q46K42_PROMT Length = 1261 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 276/1288 (21%), Positives = 510/1288 (39%), Gaps = 148/1288 (11%) Query: 1 MSDVAETLDPLRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+++ E P + PL G RLIEASAGTGKTF+++ L LRLL + ++ E+ Sbjct: 1 MTNI-EFFQPNKYPLSNGIRLIEASAGTGKTFSLSHLVLRLLT--------EKEYSINEI 51 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETT-------DNPLYERLLEEIDDKAQA-- 110 LVV+FTEA +E++ RI + T DN L E + I K +A Sbjct: 52 LVVSFTEATASEIKARIIERLILALKIIESINTNVKPYKIDNVLNEWVDLNITSKEKALY 111 Query: 111 -AQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169 A LL A ++D A + TIHGFC + L A E+G + +D L + ++W+ Sbjct: 112 IASLLLEALERIDNADITTIHGFCSKTLRREAIENGNNLNPTIEKDSYSLINEIVEEYWK 171 Query: 170 RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI 229 + + + +F++ + L+ ++ K D + S +Q+ Sbjct: 172 KEILEIEISELKGLFKSNFNRKNLIDVLSSLDNDPNNSFKQTFNDLKIEESLSSQLNNYS 231 Query: 230 DTVKQQWRDAVGELDALIESSG------------IDRRKFNRSNQAKWIDKISAWAEEET 277 +++ ++ E +E S D + ++ + + +S W EE Sbjct: 232 ESLWIKFTTIWEEKGQELEDSFREIAKDLRSQGIKDTKPYSSKPRKNRYELLSNWIEEYK 291 Query: 278 NSYQLPESLEKFSQRFLEDRTKAG-------------GETPRHPLFEAIDQLLAEPLSIR 324 + P + +Q+ + + P+ + I L P Sbjct: 292 EKKR-PSYEDIQNQKLINEYFHPKNIYQLDMKHKINACSKEMEPILDIIGDLYDSPG--- 347 Query: 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLD------SALRSE-SGEVLAAAIRTR 377 +LV AL + + + K ++G + + D+L LD +A++ + + + + R Sbjct: 348 ELVWEHALLWTKRELEKRKSKKGLINYSDLLKLLDPKNQNSNAIKDKVNHNNIYKNLEQR 407 Query: 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV 437 + VA+IDEFQDTDP Q R+ ++ + ++ LL+IGDPKQAIY+FRG + TYMKAR Sbjct: 408 YKVALIDEFQDTDPVQLRLLKKAFGNRSSHLLLMIGDPKQAIYSFRGGSLNTYMKAREAC 467 Query: 438 HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 + ++ N+RS ++ ++NKLF D + + + + L G +P Sbjct: 468 DQIHLMNANYRSTKSLILTLNKLF---LDGLIRSNLSTQELNPCSQEDLLEL--NGIKEP 522 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + L++ ++ ++I D + L + ++ + + SDI +L Sbjct: 523 FKILNLIDTNQKVKDQRIKLDSK---SKIEDKIPKVIGSYLLELLSNNPKDLNPSDICIL 579 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 V +A + L+ + IPS LSN +++F AQ + + +++P + L Sbjct: 580 VNRHDQAKNIHSYLSKIRIPSQLLSN-ENIFTREGAQILQIFINCIVSPHNQQKLALLAC 638 Query: 618 TSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT 677 + +M + D +D + +F +++ G++ L + ++IA+ Sbjct: 639 SELMQWTKEKLIKSKIDGD-FDSLSSKFYELSKLFPTIGLLGCLSNFLEGKSIAD----L 693 Query: 678 AGGERRLTDILHISELLQEAGTQLE-SEHALVRWL-SQHILEPDSNASSQQMRLESDKHL 735 + L D+ S+L+ E + + + +WL SQ + Q Sbjct: 694 SNRGTLLGDLYQSSQLVDEQIHRQKFNALRASQWLSSQRFQSIEQIPEEYQPNSAISNSS 753 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL----NAAPESVDLAE 791 V I+TIHKSKGL++ +V P++ ++ + + D Sbjct: 754 VNIITIHKSKGLQFKIVICPYLWQKPPDRKSLLWKDNQNLLISKKYKWNKKYSSYQDFIR 813 Query: 792 AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA- 850 E L E R+ YVA TR+ + A + G+ ++ ++ + Sbjct: 814 KESLNEAERIAYVAFTRAKKQLIVLWANAAGQEGNPLSGFLFGSESINLKIEDHTKEMME 873 Query: 851 -AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGL 909 + ++ ++ D +T ++ W ++W S+S Sbjct: 874 NSFMKRELKVDIQDIKTIET-----SKTWSQPKSEVKLSLGAIPTHQFENSWGRYSFSKW 928 Query: 910 QQR------GHGIAQDLMPRL---------------------DVDAAGVASVVEEPTLTP 942 + ++ +L D + Sbjct: 929 ITQKNDELILKDLSDELNEDHAFKGEIEDMSFQEIDHLLVDKDQSIDRLEDQGWSKESPI 988 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDP----NWVREKLELGGFESQWEPVLTEWITAVL 998 FP+G GT LH + E +DF + + E+L + + + + + + Sbjct: 989 GDFPKGPIAGTCLHKILERIDFNDIENQLKVSTIIEEELNIVNISNSFIEPINILLKRIA 1048 Query: 999 QAPLNET--GVSLSQLSARNKQVEMEFYLPI---SEPLIASQLDTLIRQFDPLSAGCPPL 1053 PL + L+ ++ E++F +PI + P+ +L ++ ++ G + Sbjct: 1049 NIPLGGPLGKFKMKNLNTKSSIKELKFDIPICHEANPINTLELSSIFKEDVQNKYGSDYI 1108 Query: 1054 E-----FMQVRGMLKGFIDLVFRHE-----GRYYLLDYKSNWLGE----------DSSAY 1093 + G L G ID VF ++++LD+KSNW+G S Y Sbjct: 1109 NKLIDLKIHSSGFLTGSIDQVFADNPNHEIAKWWVLDWKSNWIGSSLSKEHRSSCGPSNY 1168 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP-- 1151 + M M H Y LQ +Y LALHR+L R+ DY + H GG IY+FLRG+ + Sbjct: 1169 SISRMDEEMYHHHYPLQAHIYLLALHRFLNWRLPDYSPQKHLGGYIYVFLRGLPDKEELE 1228 Query: 1152 -------QQGIYTTRPNAGLIALMDEMF 1172 G+ I +D + Sbjct: 1229 EKNFPQWTPGLIVEPAPIERIKKLDLLI 1256 >UniRef50_Q18AN9 ATP-dependent helicase/nuclease subunit A n=7 Tax=Clostridium difficile RepID=ADDA_CLOD6 Length = 1275 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 214/1334 (16%), Positives = 456/1334 (34%), Gaps = 254/1334 (19%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 E L+ + + L+ A+AG+GKT + ++++ + P+ +++LLVV Sbjct: 6 WTKEQLEVIES-RECNLLVAAAAGSGKTAVLVERIIQMIT------SRENPIDIDKLLVV 58 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFT AA +E+R RI I + D+ + L ++ Sbjct: 59 TFTNAAASEMRERIGDAIGKAL---------------------DENPENKHLQNQLVLLN 97 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIA 180 ++++ TIH FC ++ N + ++ + + ++L+ +A + + Sbjct: 98 KSSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFL 157 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ--IVARIDTVKQQWRD 238 +V + +++ + G A P + L + I D + W Sbjct: 158 NLVESYAERGGD--KEVQDIILGIYSFAMASPEPKKWLIDSAERFNIDENFDFSQSIWAR 215 Query: 239 AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 A+ + IE +G+ + + I+++ +AE+ + Y+ + + + ++ Sbjct: 216 AILDTVK-IEINGLCLNMERALKEVESIEELETFAEKLSVEYKKIADISQACNKSWDEAY 274 Query: 299 KAGGETPRHPLFEAI-----------------------------------------DQLL 317 K + + D + Sbjct: 275 KKMASMSFENYVKGVKRISKDAPSYIKESKEKAKTIRDKTKKSLESIVSATFNKDNDSIR 334 Query: 318 AEPLSIRDLV--ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEV 369 E + ++V I+ + E + +KR +G + F+D+ + L Sbjct: 335 EEIKYLYNIVKPISSVVLRFEEEYSNKKREKGIIDFNDIEHFALNILTDVDEKGNIVPSD 394 Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFT 429 +A R +F IDE+QD++ Q + + + + + ++GD KQ+IY FR A Sbjct: 395 IAVGYRNKFYEIFIDEYQDSNLVQEVLLKAVANTETPNR-FMVGDVKQSIYRFRQAKPEL 453 Query: 430 YMKARSEV-------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSA 481 +++ + H L N+RS +V++VN +F + + E + Sbjct: 454 FLQKYNNYNDKKGSSHRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNL 513 Query: 482 GKNQALRFVFKGETQPAMKMWLMEGES-----------------------CGVGDYQSTM 518 G N + K A ++ L++ ++ D Sbjct: 514 GANFNVDTDEKSIIGGATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLE 573 Query: 519 AQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLL 574 A++ I+D + + G+ + D RPV DI +L+R + A D L + Sbjct: 574 ARMVGNIIKDLMKVNEDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPVFADELMNM 633 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-- 632 +IP+ Y F+T+E + +L LLQ + P ++ L S L + + G D+ + Sbjct: 634 DIPT-YADVGVGYFDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQ 692 Query: 633 -NDEHAWDVV---------------------------------VEEFDGYRQIWRKRGVM 658 D+ ++V+ + + +++ Sbjct: 693 SKDKIFYEVLKSTAEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTD 752 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILE 717 + L + + A GG +R ++ + E Q T L+ V ++ + L+ Sbjct: 753 EFIWYLYTRTGYYAYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEK--LK 810 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHD--- 770 S+ L + ++V+I++IHKSKGLE+P+V + ++ YH Sbjct: 811 KSSSDMGSAKTLGENANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLG 870 Query: 771 ------RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 + A E L+E++R+LYVA TR+ + + + Sbjct: 871 YGPQFVDYERRISFPSIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQD 930 Query: 825 GDKKGDTDVH--QSALGRLLQKGE---------PQDAAGLRTCIEALCDDDI-------- 865 K+ + + + KG+ L +E + D + Sbjct: 931 SIKRWSNGIESLDTISQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSK 990 Query: 866 ----AWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW-------------------- 901 W + S E+ K P ++ Sbjct: 991 WYGKLWNKNDILVEKKSDEEKESIEEILEKIDVNNPDSDYYGEIEEKLNYIYPYEFSTRK 1050 Query: 902 -RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE 960 S + +++ + ++L+ + + + + G GT +H + E Sbjct: 1051 PATISVTEIKKIQNNYEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVME 1110 Query: 961 DLDFTQPVDPNWVREKLELG---GFESQWEPVLTE--WITAVLQAPLNETGVSLSQLSAR 1015 LD N ++ ++ G ++ + + I + + + ++ ++ Sbjct: 1111 VLDLKNVSSVNDIKSQIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINRE 1170 Query: 1016 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 1075 + + A I ++ L + ML+G +D F + + Sbjct: 1171 -------------KSIYAQVNMKDIYIYEKLINNDDKKLYDNESVMLRGIVDAYFEEDNQ 1217 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHF 1135 L+DYK++++ E++ +Y Q LY + + + Sbjct: 1218 IVLVDYKTDFVNEENINQ---------IIEKYKKQLDLYADIIETLTGKSVKEK------ 1262 Query: 1136 GGVIYLFLRGVDKE 1149 IYLF GVD+ Sbjct: 1263 --CIYLF--GVDEA 1272 >UniRef50_A5KIK3 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A5KIK3_9FIRM Length = 1197 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 230/1252 (18%), Positives = 426/1252 (34%), Gaps = 204/1252 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + ++ + P+ V+ LL+VTFTEAA AE++ R Sbjct: 17 NRNILVSAAAGSGKTAVLVERIIQKITDEQS------PVDVDRLLIVTFTEAAAAEMKDR 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR I + L + A + TIH FC Sbjct: 71 IREAIEKKLEENPGNV---------------------HLERQATLVHSAPITTIHSFCLS 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQV--VFETWKGPQ 191 ++ + + ++ ED L L+ + E F T K + Sbjct: 110 VIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTERFGTGKNDR 169 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSG 251 + I + + P E R A + + + R A + IE Sbjct: 170 KIEGIILKLYEYSGSY-----PRPEQWLDRCAAVYTEEEAAEAMIRRAKEHVLIRIEEPE 224 Query: 252 IDRRKFNRSNQA------------------KWIDKISAWAEE-ETNSYQLPESLEKFSQ- 291 R+ + + + I K S +AE + + ++L + Sbjct: 225 KLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSDFAEMYDAADRFVWKTLSRKKDD 284 Query: 292 ----------RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL---VITRALAEIRET 338 + L ++ K + F A + + E + + + E Sbjct: 285 SVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKEDMVSAGESVKTLVSLVKLFAEK 344 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESG-----EVLAAAIRTRFPVAMIDEFQDTDPQQ 393 A +KR R + F+DM L E +A +F MIDE+QD++ Q Sbjct: 345 FAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVAGEYAKQFEEIMIDEYQDSNFVQ 404 Query: 394 YRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTN 446 I + + ++GD KQ+IY+FR + +M+ + L N Sbjct: 405 ETILTSVSGQAEGKNNIFMVGDVKQSIYSFRLSRPELFMQKYNTYSLEDSDRQRIDLHKN 464 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAM------- 499 +RS +++SVN +F + M I + + + E + + Sbjct: 465 FRSRGEVLDSVNYIFRRIMKKEMG-GIEYDDSAALYLGAKFPKTEEIEAKRYISSECERN 523 Query: 500 ------KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 ++ +++ + + + A++ A +I+ ++ G + RPV+ D Sbjct: 524 TDLFKTELLILKDRDKEAENVRRSEARMIARRIKSLMRGGV---VSDKKTGEYRPVQYKD 580 Query: 554 ISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 I +L RS + A L IP+ +S R+ FET E +L L+ + ++ L Sbjct: 581 IVILTRSVKGWAEDFSAVLAEEGIPAYSVS-REGYFETYEVSVLLDYLKILDNGRQDLPL 639 Query: 613 RSALATSMMGLNALDIETLN--------------------NDEHAWDVVVEEF---DGYR 649 + LA+ + L D+ + D D ++ F D +R Sbjct: 640 AAVLASPLGNLLTEDMAKIRVAYPDVPFHESARMYASEEAQDPVLKDRLMRFFSQVDHFR 699 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALV 708 + + +L ++ + A GG +R ++ + E GT + V Sbjct: 700 KKVSYTPIHDLLTEIIEETGFGIYISAMEGGVQRAANVEMLVEKAKAFEGTSYKGLFHFV 759 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--- 765 R++ Q L+ + ++ V+I++IHKSKGLE+P+V+ + + Sbjct: 760 RYIEQ--LKKYDVDYGEAGIMDEQADTVRIMSIHKSKGLEFPVVFAAGMGKQFNTQDTKS 817 Query: 766 -AFYHDRHSFEA-VLDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSL 815 H +DL ++ + E AE++R+LYVALTR+ + Sbjct: 818 SMILHPEWGIGIDKIDLKRRTKAPTFLKKLIREEAMYEMWAEEMRILYVALTRAKEKLIM 877 Query: 816 GVA-------PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQ 868 + G + L + E CI +DI Sbjct: 878 TGVLPDRFIMRSGKDGVITAGAKSYFDWIIPALWSEEEEAALEDAPVCIFQYTGNDIGAD 937 Query: 869 TAQTGDNQP-------WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLM 921 Q Q W V V E+ K L + S G++ +L Sbjct: 938 ILQVKSEQLALDVLKHWDVTKVYDPEIR-KCLDEQADYVYPYYSEGGMK--MKFTVSELK 994 Query: 922 PRLDVDAAGVASVVEEPTLTP--------HQFPRGASPGTFLHSLFEDLDFTQPVDPNWV 973 R + + +EP P + GAS G+ H E LDF + + + + Sbjct: 995 KRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLSGASRGSAYHKFLELLDFAKEYEADDL 1054 Query: 974 REKLELGGFESQWEPVLTEWI--TAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEP 1030 ++E + + + E I +++ ++GV + Q + K E F + ++ Sbjct: 1055 EAEVERLAEDGRLSREMAECIETEDMMRFLRTKSGVRMLQAARNRKLYKEQPFVISVNAS 1114 Query: 1031 LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDS 1090 I + + +++G ID+ F E +LDYK++ + Sbjct: 1115 EIYQG------------------DLSGEKILVQGIIDVYFEEEDGLVVLDYKTDQVKSRK 1156 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 +Y Q + Y AL + + + +IY F Sbjct: 1157 E-----------LVEKYHAQLEYYAHALSQLTGKTVKEK--------IIYSF 1189 >UniRef50_Q1WRS0 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus RepID=ADDA_LACS1 Length = 1248 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 215/1301 (16%), Positives = 444/1301 (34%), Gaps = 254/1301 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + + + ++++ELLVVTFTEAA E++ RI+ Sbjct: 21 NILVAASAGSGKTRVLVERVINKI---------KQGVSIDELLVVTFTEAAAKEMKERIQ 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + E + L +++ A + T+H FC +++ Sbjct: 72 IALRKELSTADSEEEK------------------RRYLTQLSKLNVANISTLHAFCLQII 113 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYP-----------------LPRE 178 + + +++ +++ L + D R Y Sbjct: 114 KQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVVNFSSDRNDDG 173 Query: 179 IAQVVFETWK------GPQALLRDI-NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 ++++V +T++ P L ++ + Y G+ P++++ ++ + QI D Sbjct: 174 LSELVMKTYQFANANPNPDEWLNNLVSEYDLGDQPLMESNFYQNKIKPNVLDQIQLAKDN 233 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS- 290 +KQ +A G+++ ID++ + L +L+ F Sbjct: 234 LKQGMDEA--------NKLGLEKLYQTFEQDCATIDELQDFVVGCKEWNNLKTTLQNFKF 285 Query: 291 -----QRFLEDRTKAGGETPRHPLFE----AIDQL--------------LAEPLSIRDLV 327 R L+D K E L + I+ L L + Sbjct: 286 KRAKSDRGLDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVET 345 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDE 385 ++ + E ++EKRRR L F D+ L + G + ++ +F M+DE Sbjct: 346 LSEVVKEFGAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDE 405 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HA 439 +QDT+ Q I I H P + ++GD KQ+IY FR AD ++K Sbjct: 406 YQDTNQLQETILTTIAHKNPG-NMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNDDE 464 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----------EIPFIPVKSAGKNQALR 488 L N+RS + N +FSQ D + + P ++ K + L Sbjct: 465 RIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKAEVLV 524 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP 548 + + +Q + + E + + + A +I++ ++ G++ RP Sbjct: 525 YESEDSSQESDDEPV--NEDFSIDNKAQGQIVMTAKRIKELVENGEK--IYDKKQGTIRP 580 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 + DI++L +R+ + + L +P +++ + + F+T E + M+ LQ + P + Sbjct: 581 IEYRDIAILAPTRKNNLILTEEFKRLGVP-IFVPDAQNYFQTTELKIMMSFLQIIDNPYQ 639 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWD----------------------------- 639 + L + L + ++GL ++ L ++ D Sbjct: 640 DIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLYEKIA 699 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 + +++ +R + ++ + ++ + + + GG +R ++ + E E Sbjct: 700 IFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAAEYEE 759 Query: 700 -QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT 758 + VR++++ + + + + V ++TIH SKGLE+P+V+L T Sbjct: 760 MSFKGLFQFVRFINKMQTKNKDLSEATTQVSD---DAVTVMTIHGSKGLEFPVVFLLDAT 816 Query: 759 NFRVQ---EQAFYHDRHSFEAVLDLNAAPESV----------DLAEAERLAEDLRLLYVA 805 + + + + + L+ A + AE +RLLYVA Sbjct: 817 HKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGKQALKKLAAEQMRLLYVA 876 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSAL--------------------------- 838 LTR+ + + + K +L Sbjct: 877 LTRAEQQLFIVGSYKDKNEALSKWKKATQSESLVLNAGIRASVRNFMDWIGMCLTRSEIF 936 Query: 839 ---GRLLQKGEPQDAAGLRTC-----------------IEALCDDDIAWQTAQTGDNQPW 878 + EP+ L ++ + + Q + + +P Sbjct: 937 KEVDDTVDAKEPEYIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEPL 996 Query: 879 QVNDVS----TAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD-AAGVAS 933 ++ND L +K + S L++ ++M L++D V Sbjct: 997 EINDKQYRIIDKILQSKYPNESLAKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQVPQ 1056 Query: 934 VVEEPTLTPHQFPR---------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFES 984 + P+ A G H L + L V + + L + Sbjct: 1057 GINRYVQNELSLPKFMTTKVKVSPAQVGIATHLLLQKLPLDDEVTLEELMQLLAQLVEDK 1116 Query: 985 QWEPVLTE-----WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 + + I + L + + + E+ F + I + S +D Sbjct: 1117 LITSEVAKEINLNQIKVFYTSDLGRKVLK----NKDKVKRELPFAMIIPAGRLFSNVDND 1172 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + Q ++ G ID + + + DYK++ + Sbjct: 1173 VEQPI----------------LVHGIIDGLIELDDEVIIFDYKTDH-----------HTS 1205 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADY-DYEHHFGGVI 1139 Y Q LY +A+ L +++ Y G I Sbjct: 1206 EDKLIENYRGQLNLYAMAVESMLNKKVSQKIIYSLDLGKSI 1246 >UniRef50_Q15V10 DNA helicase/exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V10_PSEA6 Length = 1320 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 345/997 (34%), Positives = 504/997 (50%), Gaps = 72/997 (7%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 L+ PL G LIEASAGTGKT+TI LYLRLLLG + PL+V+++LVVTFT Sbjct: 3 PLNTKTFPLTGASLIEASAGTGKTYTIVNLYLRLLLGDECT-----PLSVDKILVVTFTN 57 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AATAEL+ RIR + + + + + L+E D+ LLLA +QMD+AAV Sbjct: 58 AATAELKQRIRQRLQRAYLDFYAGVSSDDFTQYLIERSDNIELDCHRLLLAIKQMDDAAV 117 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFET 186 +TIHGFCQRML+L+AFESG ++EQ L+ DES A D+WR H LP ++ + + Sbjct: 118 YTIHGFCQRMLSLHAFESGAMYEQSLVLDESQWLKLAVEDYWRGHIVHLPSQVLNELLDI 177 Query: 187 WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDAL 246 W PQAL + L V D +T + + + K+ WR+ + Sbjct: 178 WHCPQALQSALRSLLYRH--VTPLQTVDVKTSHESVDKYIKALQDTKRWWREN-EVAQQI 234 Query: 247 IESSGIDRRKFNRSNQAKWIDKISAWA-EEETNSYQLPESLEKFSQRFLEDRTKAGGETP 305 I++ D + + +A +I K+ A+ +++ + + FS + K ++ Sbjct: 235 IDA---DLKANTKLGKADFIAKMQAFCLSDDSRADFDKDLWTTFSPAKVLSAMKKTSKSL 291 Query: 306 RHPLFEAIDQLLAEPLSIRDLVI----TRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 H F + L D ++ AL I +A K+R L DD+LS L A Sbjct: 292 AHLDFSRFETLAHLQKQCHDQLLLAHSLDALKHISTNLASNKQRLQLLSPDDLLSSLHRA 351 Query: 362 L-----------------------RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 L + + LA AI+ +P A+IDEFQDTDP Q+ IFR Sbjct: 352 LLAQVESNSGQVIEPDSELSHRDKLDTAHQSLAQAIQLSYPAALIDEFQDTDPVQFDIFR 411 Query: 399 RIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARS--EVHAHYTLDTNWRSAPGM 453 I+ Q + IGDPKQAIYAFRGADI TY+ A+ + +TL TNWRS P + Sbjct: 412 IIYTQQFGDVTPCWVAIGDPKQAIYAFRGADIHTYIAAKKLVDASRQFTLGTNWRSQPSL 471 Query: 454 VNSVNKLFSQTDDAFMFRE-IPFIPVKSAGKNQALRFVFKGETQPAMKMWL-MEGESCGV 511 V VN LF+Q++ F+F++ IPF V S + L+ V + A +G G Sbjct: 472 VEGVNTLFTQSEAGFLFKDSIPFQAVASVEQQSGLQVVGQAHNSLAFHHLTSNDGLPIGW 531 Query: 512 GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 G+ QS +AQ CA I ++ G GEA + RPVR D VLVR R EA ++ AL Sbjct: 532 GEAQSALAQQCALSIAQFIHQGASGEAQIK----QRPVRPGDCCVLVRDRNEADTIKQAL 587 Query: 572 TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL 631 L + S++L+ R SVF + A ++ ++QA+ P + LR A+A+ + +A ++ L Sbjct: 588 AALGVDSMFLA-RKSVFASQTAVDLFAIIQALANPSNDRYLRGAIASELFCYDATTLDAL 646 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLAT-AGGERRLTDILHI 690 +DE W +VE+F + Q+W+++G+M L LM IAE L+ G+RRLTD+ H+ Sbjct: 647 FSDEWQWQKLVEQFAYWHQLWQRQGLMMALNILMRHFKIAERLVGQYHDGQRRLTDLRHL 706 Query: 691 SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 ELLQ + E ++ W H+ EPD++ QQ+RLE++++LVQI+T H SKGLEYP Sbjct: 707 VELLQVQSQLMSGESQILHWFQAHLAEPDNDNEGQQIRLETEQNLVQIITQHTSKGLEYP 766 Query: 751 LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 LV++PF + R ++A YH+ V+D A E++ LA+ ERLAED+RLLYVALTR+V Sbjct: 767 LVFIPFASRCREMKEAIYHNEKD-GLVIDFLGADENLALADHERLAEDIRLLYVALTRAV 825 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG----EPQDAAGLRTCIEALCDDDIA 866 +C +G+ +K ++ + Q+ALGR+L + D D Sbjct: 826 HYCFIGL--WNNSHPQRKKESQLMQTALGRVLFNQGTQVSDAVITQRLDDLSQTIDVDYL 883 Query: 867 WQTAQTGDNQPWQVND-------------VSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 TAQ + + + S A L A L + WR+TSYS + + Sbjct: 884 GFTAQDAERKATEFKQFLLSQDSKESLQTNSNAMLRAAVLPKPVTRRWRLTSYSAISSQQ 943 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGAS 950 H D V S P Sbjct: 944 HHEFVAPGQDEGADKLDVISAYASANTQSKTEPEAGE 980 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 156/318 (49%), Gaps = 13/318 (4%) Query: 868 QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD 927 Q+ + + ++ + D+ ++ ++ + Sbjct: 971 QSKTEPEAGEYIAPQMAAEATQDNPSVEVHNDSEQMLLDDETALPQANEPNRVLDDIHGI 1030 Query: 928 AAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGGFESQW 986 + E+ L F +GA G+FLH + E +DFT P++ + + EK G E +W Sbjct: 1031 SDIDEVGAEQEVLDQFTFVKGAQAGSFLHGVLESIDFTNPINLMDVIIEKGTWYGIEQKW 1090 Query: 987 EPVLTEWITAVLQAPLNETG---------VSLSQLSARNKQVEMEFYLPISEPLIASQLD 1037 V+ +W+ VLQ+ L +SLS L+ VEMEFYLP+ + A + Sbjct: 1091 FAVVDKWLRDVLQSKLTAESSNIQQNGEHLSLSALAKNQVLVEMEFYLPL-LEVKAQTFN 1149 Query: 1038 TLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 ++ Q P +F Q+ GMLKGFIDL +++G++Y+LDYKSN+LG + + Y +A Sbjct: 1150 HILNQHIPQRQHHY--QFEQLNGMLKGFIDLTLQYQGKFYVLDYKSNYLGAEFADYHGEA 1207 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYT 1157 MA AM+ H Y LQ LYTLALHR+L+ + +DY Y GG Y FLRG+ E G++ Sbjct: 1208 MANAMEEHDYYLQAILYTLALHRWLKSKKSDYAYADDIGGAYYTFLRGMHSEKSGNGVFY 1267 Query: 1158 TRPNAGLIALMDEMFAGM 1175 P LI +D +F G Sbjct: 1268 LMPAQALIEDLDALFNGE 1285 >UniRef50_A5D1P3 ATP-dependent helicase/nuclease subunit A n=2 Tax=Peptococcaceae RepID=ADDA_PELTS Length = 1269 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 239/1311 (18%), Positives = 432/1311 (32%), Gaps = 240/1311 (18%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 AE L+ + G+ L+ ASAGTGKT +A +R + +P+ V+ LLVV Sbjct: 19 WTAEQLEAISA-RGGDVLVAASAGTGKTAVLAERIIRRITD------PIKPVDVDRLLVV 71 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFT AA AE+R RIR L EI + ++ L + Sbjct: 72 TFTSAAAAEMRERIR--------------------LALAREISRRPESGH-LQRQAALLG 110 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIA 180 A + T+H FC +L + + G+ ++ ++ Q A + + R A Sbjct: 111 RACISTVHSFCLDLLRQHFYRIGLDPSFRVADETEAALIQTGALEEVFERRYAAEDNIFA 170 Query: 181 QVVFETWKG-PQALLRDINRYLQGEAPVIKAPPPDDETLAS------------------- 220 +V ALL+++ A P + LA Sbjct: 171 ALVDCYGGRHDDALLQELVLDAYKFARSTPWPEDWLDGLAEGFNLPGGASFDRTPWSAVL 230 Query: 221 ----------RHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKIS 270 A + A + ++ + E + R + A W + S Sbjct: 231 KQAAEIELAGARADLEAALRIAREPGGPQAYLANLEQEHDLVCRLLQSCRTNAPWAELYS 290 Query: 271 AWAE------EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIR 324 + E ++ L ++ F E K + + L A+ + Sbjct: 291 YFKEVVFSPLKQCRKEDADLKLAGQARNFRESAKKKVMQVKSRYFSLPPEDLCADLRRMA 350 Query: 325 DLV--ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-----VLAAAIRTR 377 L+ + + E T + K RG + F+D+ L + +A ++ + Sbjct: 351 PLIKELAGLVREFDATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSGAVPSQVAHELQEK 410 Query: 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSE 436 F ++DE+QD + Q I + + + L ++GD KQ+IY FR A+ ++K + Sbjct: 411 FVEVLVDEYQDINAVQETILQMVSRKGEGQSNLFMVGDVKQSIYRFRLAEPGLFLKKYAS 470 Query: 437 V--------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQAL 487 L N+RS G+V++VN +F Q + + G + Sbjct: 471 FSAGTGGGQGRRLALTANFRSRQGVVSAVNFIFKQIMTPAVGEMAYGSDAMLVYGADYPP 530 Query: 488 RFVFKGETQPAMKMWLME---------GESCGVGDYQ----------------STMAQVC 522 +G + A+++ L+E G+ + A++ Sbjct: 531 VPEGQGNYEEAVELHLVERGPAGKDGGGDDPAGEEADGGVEAVEEIEEELEAGQKEARLV 590 Query: 523 AAQIRDWLQAGQRGE----ALLMNGDDARPVRASDISVLVRSRQE-AAQVRDALTLLEIP 577 A +I++ L GE RP+ D++VL+R+ A + IP Sbjct: 591 ARRIKELLGGSPGGEHALEIYDRELKKYRPLTYRDVAVLLRATAGYANSFVEEFRREGIP 650 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN----- 632 + Y FE+ E + ++ LL+ + P ++ L L + +GL A D+ + Sbjct: 651 A-YAELSTGYFESTEVETVISLLKVIDNPRQDIPLAGVLRSPAVGLKAGDLARIRLASPR 709 Query: 633 ----------------NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 +++ + +R I R+ + ++ A+ + Sbjct: 710 GDFYDAVVAASLAGQGELSERLADFLKKLEEWRTIARQGTLADLIWAVYRDTGYYDFTGC 769 Query: 677 TAGGERRLTDILHISELLQEAGT-QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GG +R ++ + + ++ T +R++ + L +++ Sbjct: 770 LPGGGQRQANLRALHDRARQFETTAFRGLFLFLRFIERLREGGR--DFGAARLLSEKENV 827 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEAVL---------DLNA 782 V+I++IHKSKGLE+P+V++ + + +H L A Sbjct: 828 VRIMSIHKSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQLVDAEARVTRPTAA 887 Query: 783 APESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTD--VHQSALGR 840 + E LAE++R+LYVA+TR+ L + ++ AL Sbjct: 888 KLALKHRLKMEALAEEMRILYVAMTRAQEKLILVGSARNLPGCARRWCGPAGTAGWALPD 947 Query: 841 LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVST--------------- 885 G L + D + A + P +V + Sbjct: 948 GFLAGAGTCLDWLMAALARHRDGAAIRELAACAEEPPAEVAADRSRWRVFFSDSRGRSAE 1007 Query: 886 --------------AELNAKTLQRLPGDNWRVTSYSGLQ---QRGHGIAQDLMPRLDVDA 928 L SY + + +L R D A Sbjct: 1008 MAEEPVLLAKVRRMEPLEPAGPLAGMIKARLEWSYPAIAVLGRPAKAAVTELKRRFDQLA 1067 Query: 929 AGVASVVEEPTLT------------PHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREK 976 AG E + + A G LH + + LD T +D VR + Sbjct: 1068 AGEEQYGEGHFESFRLTAGRPLFMQEKRGLTAAEAGEALHLVMQHLDLTGSLDITAVRSQ 1127 Query: 977 LE-----LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 +E Q V E I A PL L+ E+ F + + Sbjct: 1128 IEDMVWRELLTPEQAAAVPAEKIAAFFAGPLGR-----RLLAGFQVLRELPFTMAVQAAE 1182 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 I +L + + +++G ID + Y LLDYK+ G+ Sbjct: 1183 IYPEL----------------VPYPGEAVLVQGVIDCLVDEGDGYLLLDYKT---GKRPL 1223 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 A RY Q +Y A+ L ++ + +YLF Sbjct: 1224 G------RPEEAARRYCGQLNIYARAVESILGRKVKEK--------YLYLF 1260 >UniRef50_A6BJ96 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A6BJ96_9FIRM Length = 1221 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 215/1267 (16%), Positives = 417/1267 (32%), Gaps = 206/1267 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + +L P+ V+ LL+VTFTEAA +E++ R Sbjct: 17 NRNILVSAAAGSGKTAVLVERIITMLTKDDP------PMDVDRLLIVTFTEAAASEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR I + + + L + A + TIH FC Sbjct: 71 IRLAIEKKLMEYPDN---------------------EHLKQQATLIHNAQITTIHSFCLS 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQV--VFETWKGPQ 191 ++ + + ++ E+ L LR+ D + + T + + Sbjct: 110 VIRDHFHAIDIDPGFRIGEEGELKLLRHDVLEDMLEEKYQEGSKRFLDFTAAYSTGRNDK 169 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID----------TVKQQWRDAVG 241 + I + + + D + + V ++ +++ DA Sbjct: 170 KIEDLILKIYEFSRSYPDSEAWLDSCVKAYEIPDVKALEGSSIMKKVMTDIRKNLEDAKE 229 Query: 242 ELD-----------------ALIESSGIDRRKFNRSNQAKWIDKISA--WAEEETNSYQL 282 L L + + NR++ + S WA N + Sbjct: 230 LLIYAENVALSPEGPAVYEATLEKDLQVIEELCNRASYKSLAEAFSNVKWARIAANKDKT 289 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEPL--SIRDLVITRALAEIRETV 339 + + + + K + F E+ ++L+ + + + + E Sbjct: 290 VSEEKIDLVKKIREMVKGIVKNMSAQYFYESPEELVEDLRVCTPAMEELADLVRLFAERF 349 Query: 340 AREKRRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 +KR + + F DM L ++ +A + +F MIDE+QD++ Q Sbjct: 350 EEQKRAQNMIDFSDMEQYALRILTQKTENGFVPSKIAEEYQKQFEEIMIDEYQDSNLIQE 409 Query: 395 RIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNW 447 I + + + ++GD KQ+IY FR + +++ + L N+ Sbjct: 410 AILTSVSGCRSGRYNIFMVGDVKQSIYRFRLSRPELFLEKFRTYNIEESKTQRIDLHKNF 469 Query: 448 RSAPGMVNSVNKLFSQTDDAFMF-----REIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 RS ++ S N +F Q + + P +N ++ + Sbjct: 470 RSRKEVLESANAIFRQIMTEKLGGIVYDDQAALYPGAEYPENDNVKTEILVMDSDLEILS 529 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-R 561 E + + A++ A +IR+ L + + + R VR SDI +L RS + Sbjct: 530 KEEDFEEKIPSERELEARMIAMRIRELL---RSQKVTDKETGELRNVRYSDIVILTRSIK 586 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 A + L IP+ Y + F+T E ++ L+ + ++ L + L+++ Sbjct: 587 GFADVFTEVLNREGIPT-YAGTSEGYFQTQEIGVLMDYLRVLDNRRQDIPLTAVLSSAFA 645 Query: 622 GLNALDIETLN-----------------NDEHA-----WDVVVEEFDGYRQIWRKRGVMP 659 GL+ ++ + E+A +++ D +R+I + Sbjct: 646 GLSQEELAEIRCAYPDTAFFESVTKYREQGENADIQLKLQKCLDQMDDFRKIVPYTPMHE 705 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHILEP 718 +L ++ + + + GG +R ++ + E + T + VR++ Q L+ Sbjct: 706 LLWKILETTGYGDYVASMPGGAQRKANLDMLIEKARAYESTSYKGLFHFVRYIEQ--LQK 763 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF----YHDRHSF 774 + + V+++TIHKSKGLE+P+V + + + A H Sbjct: 764 YDVDYGEASIEDEHADTVRVMTIHKSKGLEFPVVIVAGMGKRFNMQDARSAVALHAGMGV 823 Query: 775 EA---------VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 + E L E+LR+LYVALTR+ + Sbjct: 824 GLDAVNLEYRTKIPSIIKKVIQKEEALESLGEELRVLYVALTRAKEKLIITGTLSNPEDK 883 Query: 826 DKKGD--TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN-------- 875 G + L L + + + + Q D Sbjct: 884 ISDGRVFQGNKRKELSFLQLSHAVTYWDFILPAVLRTEGEPLKLQILHVEDVVKESIEEE 943 Query: 876 ----------QPWQVNDVSTAELNA-KTLQRLPGDNWRVTS-------YSGLQQRGHGIA 917 + W VN++ +L+ Q + +S + L++R + I Sbjct: 944 EKSGISRAVLENWDVNEIYEPKLHDMMKEQFEFIYPYEKSSMRKLKFTVTELKKRAYEIG 1003 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQF------PRGASPGTFLHSLFEDLDFTQPVD-- 969 D + + E QF GA+ GT H + E LD + Sbjct: 1004 LDGGEEEREEEGELLQEEPEVVPMIPQFLQEDEVLAGAARGTAYHRVMELLDMKGMPEFT 1063 Query: 970 --------------PNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSAR 1015 +W+ +++ G E + +LQ + G L + + Sbjct: 1064 EDTAGEKENWKKYFMDWLDDQVRRGRIEEDAARCICW--EDILQFAKSGIGRRLREADGK 1121 Query: 1016 NKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 + E F L I + P E +++G ID F Sbjct: 1122 QRLWREQPFVLGID------------------ARELYPEEEDGELILVQGIIDAYFEEPD 1163 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY-DYEH 1133 +LDYK++ + A RY Q + Y AL + ++ + Y Sbjct: 1164 GLVVLDYKTDKVR-----------RKEELAERYQEQLRYYAKALEQMTGKKVKEKIIYSF 1212 Query: 1134 HFGGVIY 1140 IY Sbjct: 1213 TLKEGIY 1219 >UniRef50_C7GAA3 ATP-dependent nuclease subunit A n=2 Tax=Roseburia RepID=C7GAA3_9FIRM Length = 1237 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 221/1283 (17%), Positives = 427/1283 (33%), Gaps = 194/1283 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + + L L+ A+AG+GKT + ++++ P+ ++ LL Sbjct: 3 MTWTDDQRKVIEL-RDRNILVSAAAGSGKTAVLVERIIKIITDK------EHPVDIDRLL 55 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT AA AE+R RI + + L E+ DD + L Sbjct: 56 IVTFTNAAAAEMRERIGNALENA----------------LKEQPDD-----EHLQRQLSL 94 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 + A + TI FC ++ + E + ++ ++ L L+ A ++ E Sbjct: 95 LHNAQITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKEDVLAKVLLKNYEESAPE 154 Query: 179 IAQVVFETWKGPQAL--------LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 V G L + +R + A + A + Sbjct: 155 FLAFVDGYASGRNDAALSGMILQLYEFSRSYPWPKKWLLAAAESYGIEDEASLESAAFMQ 214 Query: 231 TVKQQWRDAVGELDALI-ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF 289 ++ Q + +L AL + + + AK ++ +E S + + + Sbjct: 215 SLLQNLKRVSEDLVALSGRAYKLTQDDDGPDMYAKALEGDLEKYKEIAASESFADFYQNY 274 Query: 290 S----------------------QRFLEDRTKAGGETPRHPLFEAIDQLLAEPL---SIR 324 + L + K + F +++AE + + Sbjct: 275 RNLSYDRLASSRGFDGNEEKLELVKKLREMGKDAVKKINRQYFFTSPEIMAEQMKKTAPM 334 Query: 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVL---AAAIRTRFPVA 381 + R E ET EKRR+ + F D+ + E + A R F Sbjct: 335 AAELVRLTLEFDETFTAEKRRKNLVDFHDLEHFALNIFVDEETGKVKKTAEEFRDNFKEI 394 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH-- 438 MIDE+QD++ Q I R I + L ++GD KQ+IY FR A +M+ Sbjct: 395 MIDEYQDSNEVQETILRAISREERGEYNLFMVGDVKQSIYRFRLARPELFMEKYDTYSLT 454 Query: 439 ----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 L N+RS +++ N +F + + +A A Sbjct: 455 DAKMQRIDLHKNFRSRNEVLDFSNDIFYRIMKRNLGN--VEYDADAALYPGASYQEETDM 512 Query: 495 TQPAMKMWLMEG---ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRA 551 P + + + + D + A++ A +I++ + + + RPV+ Sbjct: 513 FTPEILLVDGDDELLDDAAADDKKLLEARMIAKRIKELMG---TQKVTDKATGELRPVQY 569 Query: 552 SDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 SD+ +L+RS A + L IP+ +S F T+E Q +L +L+ + P ++ Sbjct: 570 SDMVILLRSLSGYADRFAAVLNDAGIPAHTVS-ATGYFSTVEVQTVLSMLRILDNPRQDI 628 Query: 611 TLRSALATSMMGLNALDIETLN---NDEHAWDVVVEEFDGY------------------- 648 L + L + + GL+ ++ L + ++ V+EE + Sbjct: 629 PLTAVLRSPIAGLSDEELAKLRLKDKNVRFYECVLEECERLKQEAEENPGQGRDDSEEKL 688 Query: 649 ----------RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEA 697 RQ+ + ++ L+ + A G+RR ++L + E + Sbjct: 689 YRFYVTYEKLRQLVPDTPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYE 748 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757 T + VR++ + L+ + + ++++V+I++IHKSKGLE+P+V+ + Sbjct: 749 NTSYKGLFHFVRYIDE--LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGM 806 Query: 758 TNFRVQEQ----AFYHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYV 804 ++ H A + E L E+LR+LYV Sbjct: 807 GKNFNRQDTRSRLVLHPELGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYV 866 Query: 805 ALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC-------- 856 ALTR+ L + L + + L L ++ + Sbjct: 867 ALTRAKEKLILTGS-LKKAEETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASCQDKY 925 Query: 857 ------IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV------- 903 L +++ Q + E + + Sbjct: 926 QIRLMRAAELVQEELETQIKDDWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRK 985 Query: 904 --TSYSGLQ----QRGHGIAQDLMPRLDVDA--AGVASVVEEPTLTPHQFPRGASPGTFL 955 S S L+ + ++ +P + V + E GA GT + Sbjct: 986 NKYSVSELKHRAMREAFEKEEEAVPVFQYEEVVPYVPAFAREIEQQSEDASPGALRGTAM 1045 Query: 956 HSLFEDLDF-TQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSA 1014 H + E F + V LE + ++ I V + G + Sbjct: 1046 HRIMECYQFSSGVSAKEQVAGMLEKEQITPEMHGLIR--IPQVEYFVNADIGKRMGTAEK 1103 Query: 1015 RNKQ-VEMEFYLPISEPLIAS-------QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFI 1066 K E F + ++ + + ++ + + +++G I Sbjct: 1104 DGKLYREKPFVMGFTDEQLDEFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGII 1163 Query: 1067 DLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR--- 1123 D+ + + LLDYK++ + + RY Q +LY AL+R Sbjct: 1164 DVFWIEKDGIVLLDYKTDRVDT-----------EKELSERYAAQLKLYEEALNRVYENEK 1212 Query: 1124 ------HRIADY-DYEHHFGGVI 1139 ++ + Y G VI Sbjct: 1213 DAAGNPLKVKEKLLYSFRIGKVI 1235 >UniRef50_A8U8N0 Exonuclease RexA n=3 Tax=Lactobacillales RepID=A8U8N0_9LACT Length = 1267 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 207/1287 (16%), Positives = 420/1287 (32%), Gaps = 237/1287 (18%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + + + V+E+L+VT+TEAA E++ RI Sbjct: 27 HNILVSASAGSGKTTVLVQRVIEKI---------KAGTNVDEMLIVTYTEAAAKEMKARI 77 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + I E + + + L +++A++ T+H FC ++ Sbjct: 78 QVAIQESVT------------------SESDMELKRHLTRQVTLINQASISTLHAFCLQV 119 Query: 137 LNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKG----- 189 + + + +L+ DE+ L ++ + R Y + + + ++ Sbjct: 120 IRRYYYLINLDPIFRLLTDETEILLLKESVWEDVREELYGEEDTLFKSLTASYSNDRSDA 179 Query: 190 ------------------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 P+A L ++ Q E + E L + ++ + Sbjct: 180 GLTDLIFSLYEFSRANPRPEAWLEQLSYLYQVEGNDLTNGVLFKELLKPQILSVLDSLVE 239 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 + Q + L + + + R ++ + + + + S Q S + Sbjct: 240 LSQTAAQLGEGCEELQKQTALVRIEWTALQEIQLAINENDYQTAYNYSKQFEFSRWNAVK 299 Query: 292 RFLEDRTKAGGET---PRHPLFEAIDQLLAEPLSIRDLV--------------ITRALAE 334 + ++ K E R +L + S + R Sbjct: 300 KGTDEAIKETAEEMKLLRDQYKNRFKELTNDYFSASPQEQIDLMLNAAPLVEEMARVTQL 359 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSAL-----RSESGEVLAAAIRTRFPVAMIDEFQDT 389 + + K R L F+D+ L + + R +F M+DE+QD Sbjct: 360 FTDAYRQRKDERNLLDFNDLEHLTLQILAQFKKQDWVPTEASMHYRDKFKEVMVDEYQDI 419 Query: 390 DPQQYRIFRRIWHHQ-PETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-----AHYTL 443 + Q I R + H Q + L ++GD KQ+IY+FR AD ++K + L Sbjct: 420 NQLQENILRWLAHDQSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQYGHHQSGERIIL 479 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS ++ N +F Q D + + + A + F + ++ + Sbjct: 480 AENFRSRGEVLQFTNLIFEQLMD----KAVGQMDYDEAAQLVQGFSGFPALQKHHPELLI 535 Query: 504 MEGE----------------SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 E + D + +I++ +Q + R Sbjct: 536 YEKGTTDSEEDSEETESVNWDMRIEDKTEGELLMVGQKIQELIQ--TQFPIYDKRSKTTR 593 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 P+R DI +L +++ + + L IP + +++ + F+T E M+ LL+ + P Sbjct: 594 PIRYKDIVLLTPTKKNNLVLMEMFKRLSIP-LQVNDTQNYFQTTEITIMMSLLKVIDNPY 652 Query: 608 RENTLRSALATSMMGLNALDIETLNNDEH------------------------------A 637 ++ L + L + ++GL+ ++ ++ + Sbjct: 653 QDIPLAAVLRSPIVGLDENELASIRISQKTGDYYDALKTFYQTYPGIEKASRFTTNLYGK 712 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-E 696 DV++ + +R++ R+ ++ ++ A+ + + G++R ++ + E Sbjct: 713 IDVLLTRLNKWRELARRDHLVALIWAIYDDTGFLDYVGGMNSGKQRKANLHALYERAASY 772 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 T + VR++ + + A + D+ V+++TIH SKGLE+P+V++ Sbjct: 773 EKTSFKGLFQFVRFIEKMQEKDKDLAEPTAI--SEDEDAVRVMTIHASKGLEFPVVFVLD 830 Query: 757 ITNFRVQEQA-------------FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLY 803 +T + + + + L+E++R LY Sbjct: 831 LTKKFNLQDIKKSYVFNEQYGVGTDYKDLERRIRYPSLPETALKVEKKTKLLSEEMRKLY 890 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKG-----------------DTDVHQSALGRLL---- 842 VALTR+ L + K+ + +G L Sbjct: 891 VALTRAEEKLFLVGSYKNEEAAWKEWGVVSSHTPTVLPADIRFTSGSLMKWIGLALVRHP 950 Query: 843 -------------------QKGEPQDAAGLRTCIEALCDDDIAWQT--AQTGDNQPWQVN 881 E L D+ + D Q + Sbjct: 951 SSENEFTSFTARNGTITNHSAHFAVHFYDESVIQEQLISKDVDLDENWLEKLDEQQEKTP 1010 Query: 882 DVSTAELNAKTLQRLPGDNWR------VTSY---SGLQQRGHGIAQDLMPRLDVDAAGVA 932 + + L + TSY S +++ D M ++DV Sbjct: 1011 TDESTHQTVQKALALMNYTYEHEGASHTTSYQSVSEIKRLFEEPDSDQMVKIDVSQPRNR 1070 Query: 933 SVVEEPTLTPHQF------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQW 986 + E +L F P A GT HS+ + +D + + Sbjct: 1071 NRYVEDSLDRPLFMTELTVPSNAEIGTATHSVMQAVDLATKPTKESLEALIASLIKAGVL 1130 Query: 987 EPVLT-----EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 + + + PL + S + E F L + I + ++ Sbjct: 1131 KEEVASKVNVGQLVQFFATPLGNMILDYS----KEVHREEPFSLLLEAEKIFTDMN---- 1182 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 + + ++ G ID E L DYK++ + S Y QA Sbjct: 1183 ------------GDAEDKILIHGIIDGYIELEDHIILFDYKTDRV----SHYGAQA-GKN 1225 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIAD 1128 M +Y Q LY AL L ++ + Sbjct: 1226 ML-EKYKGQMNLYRSALESILNKKVTE 1251 >UniRef50_C0BDK3 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BDK3_9FIRM Length = 1214 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 229/1260 (18%), Positives = 437/1260 (34%), Gaps = 204/1260 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + L P+ V+ +L+VT+TEAA AE++ R Sbjct: 17 DHNILVSAAAGSGKTAVLVERIIARLTRDAN------PVDVDHMLIVTYTEAAAAEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I +E ++P E L + A + TIH FC Sbjct: 71 IGAAI-------EKELEEDPSSEH--------------LKRQSALIHTAKITTIHSFCLS 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ + ++ E+ L L+ + + + V G + L Sbjct: 110 VIREYFHTIDLDPGFRIAEEGELKLLKQDVMKELLEAKYEEGNEDFLRFVETFATGREDL 169 Query: 194 -LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA---RIDTVKQQWRDAVGELDALIES 249 + +I L A P + A + + I+ V + R V ++ L+E Sbjct: 170 QVEEIISRLYEFAGSYPDPEEWLDDCARMYEESGEKAIYIEKVMEYIRRTVADMQMLMEK 229 Query: 250 SG-----------------IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR 292 + D++ + AK +++ +E+ L + Sbjct: 230 ADQICMEPDGPYMYGEMLEADQKVLRKLFAAKSYEEMYEALKEKPAWKTLSRKKDDAVDP 289 Query: 293 FLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL----------VITRALAEIRETVARE 342 ++ +A +T + + + + +P S + + + E + +A + Sbjct: 290 TKREQVRAYRDTWKKLIDDIRNNYFFQPPSEMEADRKICIPVMHELVSLVKEYQRVLAAK 349 Query: 343 KRRRGELGFDDMLSRLDSALRSESG-----EVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 K + + F DM L + +A + F MIDE+QD++ Q I Sbjct: 350 KAEKNLIDFRDMEQFALQILTRKENGKRVPSEVAKEYQNTFEEVMIDEYQDSNLIQEAIL 409 Query: 398 RRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLDTNWRSA 450 + + E L ++GD KQ+IY FR + +M+ + L N+RS Sbjct: 410 TSVSRISRGENNLFMVGDVKQSIYRFRLSRPELFMEKFNTYSLTYGGNRRIDLHKNFRSR 469 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 ++++VN +F Q + R I + + + K ET+ + E E G Sbjct: 470 AEVLDAVNFIFRQIMTEELGR-ITYDENAALYVGASYPESEKNETEILLLDTKSEEEDTG 528 Query: 511 ------VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + ++ A +I + ++ + + RP+R DI +L RS Sbjct: 529 LSVRSGSQTAKELEVRLIAQRIGELMEN---QQIVDKETGMLRPIRYQDIVILTRSPAGW 585 Query: 565 -AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 V L IP V + D FETLE M+ L+ + ++ L + L + + Sbjct: 586 TDTVTRILQDEGIP-VLAESADGYFETLEIGWMMDYLRVLDNFRQDIPLVAVLKSPFGRM 644 Query: 624 NALDIETLNN---DEHAWDVVVEEFDG-----------------------YRQIWRKRGV 657 ++ + + + V+E D +R+ + Sbjct: 645 TNEELAQIRELNAEVPFYQNVLETADPEKKTDLPAGILKKVRDVFGWLFYFRERIPYTAI 704 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHIL 716 +L +M + + A GG+ R ++ + T + + VR++ Q L Sbjct: 705 HDLLWEIMKKTGYRDYIAAMPGGKGRRANLDMLITRAKAFEATSYKGLYHFVRYIDQ--L 762 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ----AFYHDRH 772 + + + + V++++IHKSKGLE+P+V + + + H Sbjct: 763 KKYNVDFGEAGLYDEQTDAVRLMSIHKSKGLEFPVVIVTGMGKRFNIQDTTASVVIHPDL 822 Query: 773 SFEA-VLDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVA----- 818 F +DL +S L + E L E+LR+LYVALTR+ L Sbjct: 823 GFGIDAIDLERRTKSPTLLKKVIQNEIGLENLGEELRVLYVALTRAKEKLILTGTVPHAA 882 Query: 819 --------------PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD 864 T + L ++K E ++ L + + Sbjct: 883 DKLEACQLEQENSQKETLDFTKLARATSYYDWILPAAVRKTEEVPIELKVIGVDTLVEGE 942 Query: 865 IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY----------------SG 908 + + A + + + + + T +R SY S Sbjct: 943 VDKEAADYLEKEVFLEKIEAEEHPMSVTDERFRAKIEEAFSYRYPYQGEDQLKMKYTVSE 1002 Query: 909 LQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV 968 L++ ++ L + V + + + +GA+ GT H + E LDF++ Sbjct: 1003 LKKYAAASEEEDGEILIPEEEIVPILPN--FMKEEEEVKGATKGTAYHKVMELLDFSKIY 1060 Query: 969 DPNWVREKLELGGFESQWEPVLTEWIT--AVLQAPLNETGVSLSQLSARNKQ-VEMEFYL 1025 + +RE +E E + I +++ G + + E F L Sbjct: 1061 TMDLLRENIENLKNEGYLDAGTAGCIQKKEIMEFLNTNVGKRMQNAARAKTLYREQPFVL 1120 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 + + P + +++G ID F +G +LDYK++ Sbjct: 1121 GVD------------------AKEFYPDQKKGEMVLIQGIIDAYFEEDGEIIVLDYKTDR 1162 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF-LR 1144 + A RY Q +LYT AL + +R ++ + +IY F LR Sbjct: 1163 V-----------QTEAELKDRYREQLRLYTKALEQIIRKKVKE--------QIIYSFTLR 1203 >UniRef50_A8VW69 Phospholipase D/Transphosphatidylase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW69_9BACI Length = 1244 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 204/1251 (16%), Positives = 412/1251 (32%), Gaps = 196/1251 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R + P ++ LL+VTFT AA E+R RI Sbjct: 26 NLLVAAAAGSGKTAVLVERIIRKITDE------ENPADLDRLLIVTFTNAAAQEMRHRIG 79 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E+ + + L + +A + T+H FC ++ Sbjct: 80 EAL---------------------EDKISEQPRSLHLRRQLNLLHKAPISTLHSFCMSIV 118 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKG------ 189 + + + +++++ LLR + + + + + E + Sbjct: 119 RDFYYVTDIDPSFRILDETEGVLLRDEVLEELFEEAYSSKNPDGFYDMVERFSNDRSDEG 178 Query: 190 -----------------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTV 232 P L+ P + L + +++ + Sbjct: 179 LKQVLLAVYHFSLSHPKPFEWLQYAASLYDKAGSGDVFELPWFDELTGIVKENLSQSVSF 238 Query: 233 KQQWRDAVGELDAL----------IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL 282 + + + ++ + + + ++ + + Sbjct: 239 LSEALQLIDSHEGFEPYRDAVAFELDQAKNILETDHPGTAIDRLSSVTFPRLKPLSKKVE 298 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPL-FEAIDQLLAEPLSIRDLV--ITRALAEIRETV 339 + + + L D+ K + R ++D L + ++ + V + + + + Sbjct: 299 FDPEIQEKIKQLRDKAKKTVDDSRSAYALNSLDDALNDLGALAEPVRELAKTIQRFEKKY 358 Query: 340 AREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 A +KR +G + F D+ L S GE +A F M DE+QDT+ Q I Sbjct: 359 AIKKREKGVVDFSDLEHFALKILTSSLKGEPIANQYSNYFQEVMTDEYQDTNRVQEAILS 418 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-------HAHYTLDTNWRSAP 451 ++ + ++GD KQ+IY FR A+ ++ L N+RS Sbjct: 419 QVSNSSNR---FMVGDIKQSIYRFRLAEPGIFLDKYRRYTSDGSGEGMVIDLSMNFRSRD 475 Query: 452 GMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG----------ETQPAMKM 501 ++++VN +F QT D + N VF E + + Sbjct: 476 EILSAVNYVFRQTMDERVGEIRYDDAASLVTGNHRFPEVFSPLVHVQLVNVAENESETEP 535 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQ-IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 + + AQ A I + + RPV DI +LVRS Sbjct: 536 HQTPDSDSDEKEQDLSAAQAEARSMIASIKSMTESSSVFDPSTGHERPVSYRDIVILVRS 595 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 A + IP +Y + F +E Q M+ LL+ + P+++ L S L + + Sbjct: 596 MTWADTFMEEFKAAGIP-MYADLSNGYFTAIEVQIMIALLKIIDNPKQDVPLASVLRSPI 654 Query: 621 MGLNALDIETLNNDEHAWD------------------------VVVEEFDGYRQIWRKRG 656 +GL+A ++ + D + D + + D +R R Sbjct: 655 VGLSADEMAEIRIDLPSSDFFSAIHHYADQDQVENESLQIKVKSFLTKLDEWRSSARSTA 714 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHI 715 + ++ L + GG++R ++ + + T + + ++++ Sbjct: 715 LSSLIWKLYRDTGYYDYAGGMPGGKQRQANLKALYDRAKAYEKTSFRGLYRFLSFIAKMQ 774 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ----EQAFYHDR 771 D ++ + + +V+++TIHKSKGLE+P+V++P I Q + H + Sbjct: 775 ERGDDLGEARAI--GEQEDVVRLMTIHKSKGLEFPIVFIPGINREFNQMDLRKSYLMHQK 832 Query: 772 HSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL-GVAPLV 821 H F +++ E LAE++R+LYVA+TR+ L G + Sbjct: 833 HGFGTQWFDPELRVLYPSVQHELMKEISRREMLAEEMRVLYVAMTRAKEQLHLIGSGKNL 892 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD----------DIAWQTAQ 871 + +K + + L + Q+ + A D DI + Sbjct: 893 PDQLEKWVNAGDDEGPLIPVPQRLRSKRYADWIIPAIGRHPDIQQCLRDQTADIPIPSTI 952 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDN---------------------------WRVT 904 D W + + +L P + W Sbjct: 953 LDDRSKWSMTLTQSTDLPQYVGDLQPEQHTIIDQLAKGAPVKSDPALDLEVKERFEWSYA 1012 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAGV-------ASVVEEPTLTPHQFPRGASPGTFLHS 957 Q +L LD D E P + + A GT +H Sbjct: 1013 HKEATQYLAKQTVSELKQTLDSDYGSDDFVRHFTPDFAERPAFMQQKKLKPAEKGTLVHL 1072 Query: 958 LFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW-ITAVLQAPLNETGVSLSQLSARN 1016 + + ++ Q + + + + + + + + ETG + + A+ Sbjct: 1073 VMQLVNLKQTSNKEIQAQLKQWVNEDRLTHEEADQLPVEQIARFFQTETGAEMKE--AKL 1130 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGR 1075 E+ F + A ++G +D +++ +G Sbjct: 1131 VWRELPFSFEAPVKM----------------AYPDWEGPSDEHVFIQGMVDALYQSNDGE 1174 Query: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 L+DYK++ + + A +RY Q +LY+ A+ + I Sbjct: 1175 LVLVDYKTDRI---PEHLQDDSAIGAYFINRYQTQIKLYSAAIKDSWKQNI 1222 >UniRef50_A5ZAT8 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAT8_9FIRM Length = 1220 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 221/1285 (17%), Positives = 445/1285 (34%), Gaps = 220/1285 (17%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M + + L+ A+AG+GKT + ++++ P V +LL Sbjct: 1 MKWTDKQQKVIDT-RDRNILVSAAAGSGKTAVLVERIIKMITDE------ENPTDVNQLL 53 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT AA +E++ RIR + ++ + + Sbjct: 54 VVTFTRAAASEMKERIREALEKMEEDNPNDLN---------------------VQKQLSL 92 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPRE 178 + A + TI FC R++ N + + ++ ++ +L+ + + E Sbjct: 93 IHNANISTIDSFCARVVKDNFDKIDLDPNFRIADENEIEMLQSDIVEEMLEEYYLAADDE 152 Query: 179 IAQVVFET--WKGPQALLRDINRYLQGEAPVIKAPPPDDETLA----------SRHAQIV 226 ++ + K ++ I R + + I+ E ++ + + Sbjct: 153 FMELAEKYSTGKTSDSIGELILRMYKFASGQIEPEKWIKEAISVYDVSSKEEMEQSKWMQ 212 Query: 227 ARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 ++ K + + +L+ + S + IDK+ E T S E Sbjct: 213 GYLELQKNRLEGILSQLNIALTISESEDGPKCAKALTPIIDKLQEITESRTYSAMQSELQ 272 Query: 287 EKFS-----QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD--------------LV 327 S ++ +R K + ++ +AI L + ++ Sbjct: 273 NIPSTRVSGKKDCNERKKEQVKAIKNDATKAIKDLTTKQFNLTLNQVFESICETKSSVEY 332 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVA 381 I + E + + +K +G + F+D L A + T+F Sbjct: 333 IGKLTLEFMKRLKEQKEEKGIMDFNDQAFFALHILNEYDKDGNLVPSETAKNMATQFKEI 392 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-- 439 MIDE+QD++ Q I I + ++GD KQ+IY FR A+ +++ + Sbjct: 393 MIDEYQDSNIIQEAILSAITKGFGINNMFMVGDVKQSIYRFRNAEPKLFLEKYNSFSDDP 452 Query: 440 -----HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 LD N+RS ++ SVN LF E+ I K+ L + Sbjct: 453 SADSVKIVLDKNFRSRREVIESVNFLFDFVM----HEEVGGIDYKNG---NGLVLGADYD 505 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 PA + L E GD +S A A +I++ + + G + G D RPVR DI Sbjct: 506 EPPAGQDNLTEFVMVEGGD-KSDEAAYVARKIKE-ITNPETGLKITEKGKDMRPVRYGDI 563 Query: 555 SVLVRSRQ-EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 +L+RS + + R+ L IP V+ ++ ++T+E + +L + P ++ L Sbjct: 564 VILLRSMKDNSDIYREQLENNGIP-VFAESKTGYYKTMEVMTITNMLSIIDNPRQDIPLA 622 Query: 614 SALATSMMGLNALDIETLNND----------------------EHAWDVVVEEFDGYRQI 651 + L + M G ++ + + + + +R + Sbjct: 623 AVLTSPMFGFDSNQLAIIKTENVCESFYDCVEQYSLSGSDVELRTRLTEFLNTLTKFRNM 682 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRW 710 V ++ L+ A + + GG++RL +I + E + T + +R+ Sbjct: 683 VPYTTVYDLINTLLDETGYAFYIRSMPGGKKRLLNIQALKEKAVAYDETSYKGLFNFLRY 742 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD 770 + + + + + + + ++V+I++IHKSKGL++P+V+L E Sbjct: 743 IEKI--QYLAKDDGEASTVNENDNIVRIMSIHKSKGLQFPVVFLCNTNGTSKNEANQLVS 800 Query: 771 RHSFEAVLD-----------LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP 819 +D + E +AE LR+LYVALTR+ + Sbjct: 801 GADGNIGIDCINNKLKTKQTPLLKTYIRMSNKEEDVAETLRILYVALTRAKEKLYITGLV 860 Query: 820 LVRRRGDKKGDTDVHQS-----------------ALGRLLQKGEPQDA------------ 850 + + ++ ++ + +G+ + + + D Sbjct: 861 KNAEKQIGEFESQIYDNSELMLYNDVIGAKTIMELIGKTIGRNKAFDCVRTDKDATECGN 920 Query: 851 -------------AGLRTCIEALCDDDIAWQTAQTG---DNQPWQVNDVSTAELNAKTLQ 894 I L +DI + + + + ++ E + Q Sbjct: 921 PLYDKDSFIKVKVEEQPDVILGLAAEDITDSIKKETMLMEMKQLANKENTSIEKLFQRFQ 980 Query: 895 RLPGDNWRVT-----SYSGLQQRGHGIAQDLMPRL------DVDAAGVASVVEEPTLTPH 943 +T S + ++++ G+ Q+ +V+ + E+ + Sbjct: 981 FQYPYIEDITLHSKASVTEIKKQSQGMEQEEEQDAFQAFGEEVELPEIIPDFEKEDIDEP 1040 Query: 944 QFPRGASPGTFLHSLFEDLDFT-----QPVDPNWVREKLELGGFES-QWEPVLTEWITAV 997 Q+ GA GT H +FE LD Q + ++ G + V+ + I Sbjct: 1041 QYLTGAMRGTAYHRIFELLDMELEEYNQETVKKMIDGFVDAGLIDRMGAASVMRKDIIDF 1100 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 ++ L + E F + + I S + Sbjct: 1101 TKSDLFRRMK--KAYANNQLYREQHFLMGVPACEINSN------------------TTSK 1140 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 +++G IDL F +Y ++DYK++ + M RY +Q + Y LA Sbjct: 1141 ETMIIQGIIDLCFVENDKYVIVDYKTDKV---------DTMEE--LVERYHVQLECYKLA 1189 Query: 1118 LHRYLRH-----RIAD-YDYEHHFG 1136 + + L ++++ Y H G Sbjct: 1190 IEQILGSEPGVNKVSEMIIYSVHLG 1214 >UniRef50_C0Z545 ATP-dependent nuclease subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z545_BREBN Length = 1275 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 224/1290 (17%), Positives = 433/1290 (33%), Gaps = 233/1290 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R ++ P+ V+ LLVVTFT AA AE+R RI Sbjct: 27 NLLVAAAAGSGKTSVLVERIIRRIMDEKD------PVGVDRLLVVTFTNAAAAEMRHRIG 80 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + L + A + T+H FC +L Sbjct: 81 DALRKALKDDPHSS---------------------HLRRQLALLQRATITTLHSFCLGIL 119 Query: 138 NLNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETWKG------- 189 + + + ++ + E L Q + Y + + G Sbjct: 120 RQYYYLIELDPDFRIADQMEGELLRQDVLEEQLESWYENDADFHALADVMLDGQDDHALT 179 Query: 190 ---------------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT--- 231 P+ L + ++ + + Sbjct: 180 LLLLRLYEFSRSHPAPEQWLGEAAGMFAVHDKNGLDGLEWSRSVLRSVELALGGMTAKMR 239 Query: 232 ---VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 + + L+E+ + + +A W + A + + Sbjct: 240 RAVLLAGSPEGPAGYLPLLEAEAAALHRAGAACRAGWEATVEAVRGVVFAKLPPVKGTDP 299 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAI----DQLLA--EPLSIRDLVITRALAEIRETVARE 342 + ++D + + + + +Q +A + ++ + R + + E Sbjct: 300 LVKEQVQDLRNSVKKELAEQIEQYFSTPAEQYVADLQRIAPHMQTLARLVTAFSDAYQLE 359 Query: 343 KRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 KR RG + F D+ L + ++ +R +F ++DE+QD + Q I Sbjct: 360 KRLRGLVDFGDLEHLALRVLTETNESGKTVPSSISTQLREQFAEVLVDEYQDINLVQETI 419 Query: 397 FRRIWHHQPET---ALLLIGDPKQAIYAFRGADIFTYMKARSEVH-----------AHYT 442 + + ++GD KQ+IY FR A+ +++ Sbjct: 420 LQMVSRDGANGQPANRFMVGDVKQSIYRFRLAEPKLFLEKYVTYQKDGDADEACIGRRID 479 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L N+RS +V++VN LF Q + EI + P + Q M + Sbjct: 480 LAANFRSRREVVDAVNFLFRQIMSHGVG-EIGYDPSAELINRASYPEAQPNRLQAEMHLI 538 Query: 503 ------------------------LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE- 537 + +GES A++ A++IR W++ G+ E Sbjct: 539 DRNTVIADEGQAVVAEATDEGEAGIPDGESAEEASVAQLEARLIASRIRRWMEPGEGEEP 598 Query: 538 --ALLMNGDDARPVRASDISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQ 594 RP+ DI +L+R+ +++ L IP VY F E + Sbjct: 599 LLVFDKKAGGMRPLAYRDIVILLRATSGWGQTMQEELHAAGIP-VYAEQTAGYFAATEVE 657 Query: 595 EMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND-------------------E 635 ML LL+ + P ++ L + L + ++GL + + + Sbjct: 658 TMLSLLRVIDNPLQDIPLAAVLRSPIVGLREQQLAQIRIHYATGPFHQAVLQYAEERPPQ 717 Query: 636 HAWDVVVEEFDG----YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 +W+ + +F G +R R+ + +L L + + A G++R ++ + Sbjct: 718 ESWEKRLRQFFGRLGLWRTEARRGALSELLTMLYRETGYLDYVAALENGQQRQANLRALY 777 Query: 692 ELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 + Q +R++ + L+ N + + ++ +V+I+TIHKSKGLE+P Sbjct: 778 DRARQYEAGSYRGLFRFLRFVDR--LQEAGNDMGEARTIGENEDVVRIMTIHKSKGLEFP 835 Query: 751 LVWLPFITNFRV----QEQAFYHDRHSFEA---------VLDLNAAPESVDLAEAERLAE 797 +V++ + + Q H F AA + LAE Sbjct: 836 VVFVAGMGKQFNTMDLKSQFLLHKDLGFGPMAVEPSMQLRYPSLAALGIRQKLRRDMLAE 895 Query: 798 DLRLLYVALTRSVWHCSLGV-----APLVRRRGDKKGDTDVHQSAL----GRLLQKGEPQ 848 ++R+LYVALTR+ L A V G + + L G L G Sbjct: 896 EMRVLYVALTRAREKLILVGSSKDLAKSVTDWGRQDDSERLSDEDLIQAKGYLDWVGRAM 955 Query: 849 ---DAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN--WRV 903 AGL + D+ W + EL A+ + R+ Sbjct: 956 LRHPGAGLLRAYPEQQGSGDVVRVRSVPDDSVWSFHFYQADELRAQGESANHEASLWERM 1015 Query: 904 TSYSGLQQRGHG--IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-------------- 947 T + +R + + + RL + + + R Sbjct: 1016 TRREAIAERPSDDILREIVEKRLGWQDPHPIAPRVAAKWSVSELKRHAKVSKGGQPLTLP 1075 Query: 948 ------------------GASPGTFLHSLFEDLDFTQPVDPNWVREKL-----ELGGFES 984 A GT H +F+ LD +P+D +RE++ + Sbjct: 1076 SITEKPKFLSEQKSNRLTAAEKGTITHLVFQHLDLKRPLDEADIREQVTALAAHRFLTDE 1135 Query: 985 QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 Q + V I PL + S + + E+ F L + + ++L Sbjct: 1136 QVQAVDVPQIARFFADPLGQRMKSAAVV-----HRELPFTLVLPAYEVEAELG------- 1183 Query: 1045 PLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 E + +++G ID + +G L+D+K++W+ ++++A + M Sbjct: 1184 ---------EESDEQVVVQGVIDCLLEEPDGSLVLIDFKTDWMAKEATAVAMEEMKR--- 1231 Query: 1104 AHRYDLQYQLYTLALHRYL--RHRIADYDY 1131 RY+ Q +LY A+ + + + ++ Y Y Sbjct: 1232 --RYEGQIRLYVRAIKQIIKPKGNVSSYLY 1259 >UniRef50_Q03NA7 ATP-dependent helicase/nuclease subunit A n=1 Tax=Lactobacillus brevis ATCC 367 RepID=ADDA_LACBA Length = 1262 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 223/1283 (17%), Positives = 428/1283 (33%), Gaps = 220/1283 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + L + ++++L+VTFT+AA AE+R RI+ Sbjct: 21 NLLVSASAGSGKTRVLVQRVIERL---------KTGVGIDQILIVTFTKAAAAEMRERIQ 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + ++ Y L Q+ A + T+ FC R+L Sbjct: 72 TALRQELAVSQGDSAQQQFY-----------------LRQLNQLPVADISTLDAFCLRLL 114 Query: 138 NLNAFESGMLFEQQLIEDESL---LRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 + + +L+ DE+ LR + AD + + E + G Sbjct: 115 QRYYYVIDLDPVFRLLADETENGLLRDEVWADLREDLYANDDSGLFARLTENFSG-DRND 173 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK-----------------QQWR 237 + + +Q A P LA D + QQ + Sbjct: 174 QGLADLVQQTYTFANATPNPTAWLAELPQPYQLDSDQLMTTSFYQQRLRPFFQSQLQQLQ 233 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 + AL +G+D++ + + + + + ++ + L +++ F+ + Sbjct: 234 ADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWNA-LRAAIQDFAWGRMPAV 292 Query: 298 TKAGGETP---------RHPLFEAIDQLLAEPLSIRDLV--------------ITRALAE 334 K + P P + +D L L + ++R + Sbjct: 293 RKTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTA 352 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGE--VLAAAIRTRFPVAMIDEFQDTDPQ 392 R +EK+RR L F D+ + L +S + +AA +R +F M+DE+QDT+ Sbjct: 353 FRTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGL 412 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTLDTN 446 Q I I P+ L ++GD KQ+IY FR AD +M + L N Sbjct: 413 QEAILTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGELIVLAEN 472 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RS + + N +F Q D + + + + + Sbjct: 473 FRSMKNVDDFTNLIFKQLMDRELGEIDYTGAAQLKFGASYYPDTVTSTAELLVYLTEDAP 532 Query: 507 ESCGVGDYQSTMAQ------------VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 ES G D ++ A + +I+ + + RP+ DI Sbjct: 533 ESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIAD--QTPIYDREAKQVRPMTYGDI 590 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 ++L +R + D L L IP V +++ + F+T E Q M+ LLQ + P ++ L + Sbjct: 591 TLLTPTRTNNLIITDELRRLGIP-VVVNDARNYFKTTEIQIMMALLQIIDNPYQDIPLAA 649 Query: 615 ALATSMMGLNALDIETLNNDEHAWD-----------------------------VVVEEF 645 L + ++GLN ++ L ++ D +E+ Sbjct: 650 VLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQAVYQKVSHFLEQL 709 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESE 704 +R I ++ ++ ++ + + + GE+R ++ + E + + + Sbjct: 710 QEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKSYEQSSFKGL 769 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV-- 762 VR++ + D A + +++ V ++TIH SKGLE+P+V++ + Sbjct: 770 FQFVRFVERLQERDDDLAGA---PVQAADDAVSVMTIHGSKGLEFPVVFIMDASRQFNKQ 826 Query: 763 -QEQAFYHDRHSFEAVLDLNAAPESV----------DLAEAERLAEDLRLLYVALTRSVW 811 Q+ + + + L+ LAE++R LYVALTR+ Sbjct: 827 DQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKLYVALTRAES 886 Query: 812 HCSLGVAPLVRRRGDKKGDTDVH-------------QSALGRLLQKG-----EPQDAAGL 853 + + + + + L G +P+ AA L Sbjct: 887 RVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLVRDPKFAAEL 946 Query: 854 RTCIEAL--------------------------CDDDIAWQTAQTGDNQPWQVNDVSTAE 887 R + + W A + V T + Sbjct: 947 RQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKVTTPPVDTEQ 1006 Query: 888 LNAKTLQRLPGD-NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF- 945 L+ R P T+Y + + + A V H F Sbjct: 1007 LHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGGHRFVTHDFA 1066 Query: 946 ----------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWIT 995 P G+ H + + LD T + V+ ++ + + + I Sbjct: 1067 RPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLDRVQGVIDQLVADQVLTAEVAQRIQ 1126 Query: 996 -AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLE 1054 ++ + + + E+ F L + P + + Sbjct: 1127 PELILRFFSSSVGQQVLAAPDQLHREVPFSLLM-----------------PARSLFQDFQ 1169 Query: 1055 FMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 + ++ G ID L DYK++ + + A + + + RY Q LY Sbjct: 1170 ETDSQVLVHGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVE-----RYGGQVNLY 1224 Query: 1115 TLALHRYLRHR-IADYDYEHHFG 1136 AL + + Y Y G Sbjct: 1225 AAALKQMTGQPIVGQYLYLLAIG 1247 >UniRef50_Q7U7R4 Probable exodeoxyribonuclease V, beta subunit RecB n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U7R4_SYNPX Length = 1186 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 295/1237 (23%), Positives = 471/1237 (38%), Gaps = 128/1237 (10%) Query: 8 LDPLRLPLQ-GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 DP R PL G RL+EASAGTGKTF +A L LRL+ + + LLVVTFT+ Sbjct: 3 FDPNRYPLDPGLRLLEASAGTGKTFALAHLTLRLI--------SEAAMPLPSLLVVTFTD 54 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPL------YERLLEEIDDKAQAAQWLLL---A 117 AA AELR RI + + + L ++ ++ W+ A Sbjct: 55 AAAAELRSRIGQRLQDALAGLEAVARGDALPKADSVLQQWWQQAPQGQSRRDWISRVLMA 114 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 Q+D A + TIHGFC R L A SG +QQL D + L + + W++ LP Sbjct: 115 LEQLDAADITTIHGFCSRSLRRQAINSGAAMQQQLETDATALVQEVVQELWQQQLLTLPL 174 Query: 178 EIAQVVFETWKGPQALLRDIN-------RYLQGEAPVIKAPPPDDETLASRHAQIVARID 230 Q + L + +LQ + P L R Sbjct: 175 PQLQGLVRAGLTADGLAAALLRLDADPQAWLQTDGDDFDPNQPLGAQLEVSLQLSWERFV 234 Query: 231 TVKQQWRDAVGEL----DALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL---- 282 + + + + ++ G ++ + ++ W + ++ L Sbjct: 235 QFWTRDGEGLEQCFRATAKQWKAMGFKPSPYSPKPTSDRFGQVDRWVAAQHDTPDLSTIR 294 Query: 283 ----PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRET 338 P + K G + P E + + V AL + Sbjct: 295 AQQKPLHDYFHPGVWCRTARKCGEQEPSLAAPELQQAIADLWDGPIERVWRYALQRGLQQ 354 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 + R ++R G + F +L+ +D ++ ++ R+ M+DEFQDTDP Q+R+ + Sbjct: 355 LQRRRQRSGTVSFAGLLTAMDP---GDAEASWLEPLQQRYRAVMVDEFQDTDPVQWRLLQ 411 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVN 458 R + LLL+GDPKQAIY FRG D+ TY +AR V TL+ N+R+ P ++ +N Sbjct: 412 RSFGGGSH-LLLLVGDPKQAIYRFRGGDLDTYRRARGLVSRIDTLEDNYRTTPPLMAGLN 470 Query: 459 KLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTM 518 L + + V QP + + G ++ + Sbjct: 471 ALMAPGLPESRLEVPAVHARTARSAA-----VLPEGQQPLQLLQFEQDLPAGKTAIEAAV 525 Query: 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPS 578 A + L + + + +LV +AA +R AL +P+ Sbjct: 526 PPAVAEVVMQLL-------------IEQPALSPDQLCILVSRHDQAADLRRALAERGVPT 572 Query: 579 VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW 638 ++ D V ++ A M LL A+ P + LR A+ ++G +A + + Sbjct: 573 RLVAQGD-VLDSDAALMMQHLLDALAAPADDRRLRLLAASPLVGWSADQL-RCEAQDPQL 630 Query: 639 DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG 698 D + + + G++ L L+ A E + R L D+ + L+QE Sbjct: 631 DALAQRLRQAADQLPRLGLLGCLSGLLDA----ERTAGLSDEGRMLGDLQQAARLVQEEM 686 Query: 699 TQLESEHALVRWL--SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 + + A Q + P +++ + + V +VT+H+SKGLE+PLV P+ Sbjct: 687 HRQGLDLAAAALWLRRQRLHPPSPLPPAREPHSDLAESAVAVVTVHRSKGLEFPLVICPY 746 Query: 757 ITNFRVQ----EQAFYHDRHSFEAVL----DLNAAPESVDLAEAERLAEDLRLLYVALTR 808 + + + D + + D + AE++AE RL YVA+TR Sbjct: 747 LWAGAKEARYVTGPLWRDGAAGGWRIALNRDWGLGWTVWQRSHAEQVAEAERLAYVAVTR 806 Query: 809 SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQ 868 + L A QS L L +G+ L L Sbjct: 807 ARSQLLLLWARCA-----------PQQSVLQHWLFEGDADTLRDLPLSHRPLK------- 848 Query: 869 TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL---MPRLD 925 Q W+ T QR +W +SYS A + Sbjct: 849 --PEVGQQRWRPPHRQETLAIGATPQR-IDRSWGRSSYSAWIAAPAAEALLEQGRDQDPE 905 Query: 926 VDAAGVASVVEEPTLTP-HQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKLELGGFE 983 + A + E P P FPRGA+ G LH + E L F D + + ++L+ G Sbjct: 906 AEEVTAAGLEEWPDRGPLADFPRGAAAGDCLHRMLEQLPFQCSGDWGHVIEQELQRSGLS 965 Query: 984 SQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISEPLIASQLD--TL 1039 W + + + VL PL + LS L+ + E+ F LP+ ++ L Sbjct: 966 LDWREAVEQGLQQVLDTPLGGPLAALPLSALTPDRRLHELSFDLPVRHARTDDLVEAFRL 1025 Query: 1040 IRQFDPLSAGCPPLEFMQV--RGMLKGFIDLVFRH-----EGRYYLLDYKSNWLGEDSS- 1091 + L +QV RG L G IDLVF + R+++ D+KSNW+GE Sbjct: 1026 DPEARFGRDYIDQLSSLQVNSRGFLTGSIDLVFSDAADPLQARWWVADWKSNWIGERGEP 1085 Query: 1092 ---------AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 Y Q AM M+ H Y LQ LY +ALHR+L+ R+ Y E H GG +Y+F Sbjct: 1086 GSPSCCGPRHYDQVAMEEQMRHHHYPLQAHLYLVALHRHLQWRLPGYVPERHLGGYVYVF 1145 Query: 1143 LRGVDKE------HPQQGIYTTRPNAGLIALMDEMFA 1173 LRG+ + G + +D M Sbjct: 1146 LRGMPGQSIGSSGETGPGRIVEPAPLQRVLALDRMLQ 1182 >UniRef50_C6HV35 UvrD/REP helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV35_9BACT Length = 1166 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 332/1222 (27%), Positives = 505/1222 (41%), Gaps = 105/1222 (8%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS++ + LR +G LIEASAGTGKTF + LYL +L + VE++L Sbjct: 1 MSEIRPFIPVLR---RGVTLIEASAGTGKTFALTQLYLAAVLS---------GVPVEQIL 48 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAAT ELRGR+R+ + R L + L D + + L A Sbjct: 49 VVTFTEAATDELRGRLRTLLSHARSHALGVAPPPEI---LPLVADVRPEHLTLLSRALFD 105 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 D A V TIH FC+R+L AFE F +L + + + + WRR Y I Sbjct: 106 FDRAPVATIHSFCRRVLREYAFEFDAPFSLELESSDRAFKKASVREVWRRLVYREDPRIV 165 Query: 181 QVVFETW-KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 + + KGP LL + G + ++ P A R A + AR + Sbjct: 166 WQISGLFPKGPDDLLSILPP--GGLSRPLRDNPGIPPPEAPRQAFLTARHRWISAAGTLG 223 Query: 240 VGELDALIES-SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPE----SLEKFSQRFL 294 GE + + S G + ++ K + ++A E + LP SL+ FL Sbjct: 224 EGEAERWLNSFPGSGKNGRVLADDRKKRETMAARIVELGTPHPLPPAGFSSLDDELVEFL 283 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETV---AREKRR-RGELG 350 + + + + + L ++ + R E+ A +KR +G Sbjct: 284 KTSSPGAAQPSALAALAGLREYLESARTLSSSLRERFRREVHREFSSVALKKREHQGVET 343 Query: 351 FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-----HQP 405 FDDM+ R+ + L GE LA +R RFPVA +DEFQDTD Q+ IF RI+ Sbjct: 344 FDDMIGRVVAGLMGPRGEELARLLRKRFPVAFVDEFQDTDYAQFAIFGRIYELVSKDSDG 403 Query: 406 ETALLLIGDPKQAIYAFRGADIFTYMKAR-----SEVHAHYTLDTNWRSAPGMVNSVNKL 460 ET+L+L+GDPKQ+IY FRGAD+ Y++AR + +L N+RS V +VN L Sbjct: 404 ETSLVLVGDPKQSIYRFRGADLDAYVEAREAVLKKDAEGLCSLGVNYRSDALHVEAVNTL 463 Query: 461 FSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQ 520 FS+ D F+ E + K F+ E+ + L + G Sbjct: 464 FSRHPDPFISGERIVYHPVTPKKTGPSGFLDPAESDEGLPPVLFAIDPEGEAFSNKDFVD 523 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A +I L + +P+R DI +LVR+ A + +AL L IP+V Sbjct: 524 WAAREILRLLSG--------PALREGKPLRPDDICLLVRTNSHATMMLEALESLGIPAVS 575 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 + +V A ++ LL A+ P +R L++ + + A ++ ++ +D W+ Sbjct: 576 YAGG-NVLRGEMAFDLEMLLLALKDPGDRRQMRLVLSSPLFEVPARELLSMEDDPELWNA 634 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR---LTDILHISELLQEA 697 V+ F W + G M LR L + +L G LTD+LH+ E+++ Sbjct: 635 RVDPFFRTAADWFRLGAMGALRRLCLETRVFSRILGGGAGRSGRRRLTDLLHLIEIVESL 694 Query: 698 GTQLESEHALV-RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP- 755 + LV R+L + RL++ V+I+TIH++KGLE+PLV LP Sbjct: 695 DRDRPTLALLVDRYLEARRESEKKGDDATAPRLDTLDGRVRILTIHRAKGLEFPLVILPL 754 Query: 756 FITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL 815 ++ + E +RLLYVALTR+V + Sbjct: 755 GLSGGDLSPAEEEEGEGEGEESETPEEM---------------MRLLYVALTRAVHRTVV 799 Query: 816 GVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN 875 + R + + ++GE + + Sbjct: 800 MLPC---RYVSQSSLARLLSGGSSSGGKRGEAVSFFRKEIARLVAEYPALFGEALPPDRQ 856 Query: 876 QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV 935 + + A L + L R RV S+S L + G P L D + Sbjct: 857 REGLSPESLPALLPPRRLPRPLPAPLRVESFSSLARGGREGRTLFSPALRGDDD-----L 911 Query: 936 EEPTLTPHQFPRGASPGTFLHSLFEDL--------------DFTQPVDPNWVREKLELGG 981 P G GT H FE L + + +D +LGG Sbjct: 912 PWERPAGDPEPGGPLFGTVFHRTFEILLSSAPPGEARDPFRELPEALDRAMAESSSDLGG 971 Query: 982 FESQWEPVLTEWITAVLQAPLNETG------VSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 + L L A L + +++++ + VE EF LP Sbjct: 972 QAEAFREALFPLCARTLSAGLFPDPAVPGGWFAFARIASLPRSVEREFLLPAGGLSERDL 1031 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA--Y 1093 L + P L F VRGM++GF+DL+FR + YLLDYK+N L +S A Y Sbjct: 1032 RPYLFPEGAP-------LSFDPVRGMIRGFVDLLFRQGEKTYLLDYKTNRLPGESEAAAY 1084 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ 1153 + ++ AM HRYD Q LY+LALHR L DYDY+ HFGG ++LF+R + Sbjct: 1085 GPEGLSRAMAQHRYDFQGLLYSLALHRLLAFSRPDYDYDRHFGGALFLFVR--GAGEGGE 1142 Query: 1154 GIYTTRPNAGLIALMDEMFAGM 1175 G+ RP+ I + +F+G Sbjct: 1143 GVVHLRPDRAEIESLSALFSGE 1164 >UniRef50_Q88U41 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus plantarum RepID=ADDA_LACPL Length = 1249 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 217/1293 (16%), Positives = 413/1293 (31%), Gaps = 220/1293 (17%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 ++ + + L+ ASAG+GKT + +R +L +++LLV Sbjct: 5 TNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKIL---------AGTNIDQLLV 55 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT A ++ ++ S I++ + + + A + L + Sbjct: 56 VTFTNLAAKHMKQKLESQINKRISQLMTDNPAQ----------TTASPAIRQLRQQLNLL 105 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREI 179 A + T+ FC R++ + + +L+ D + L D R Y + Sbjct: 106 GVANISTLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTL 165 Query: 180 AQVVFETWKGP--QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 ++ + L + L A P L + + + Sbjct: 166 FDLLTANFSNDRSDDGLSRLIFRLFDFAQSTPDPEGWLSKLPEPYQVDEEALTASAFYQQ 225 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWI---------------------DKISAWAEEE 276 + L ++ + R+ + + ++W E Sbjct: 226 QLLPLLINEVDGMQMKLRQAQKVATDADLVPKTLEVLATAQKTLTTLREQLATASWNELR 285 Query: 277 TNSYQLPESLEKFSQR-------------FLEDRTKAGGETPRHPLFEAIDQLLAEPLSI 323 T K + + D K T F A +Q + + + Sbjct: 286 TQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKKQMTTLSETYFAADEQQVLDIMVG 345 Query: 324 RDLV---ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR--SESGEVLAAAIRTRF 378 + + A + + A EKRRR L F D+ L +ES + A +R +F Sbjct: 346 AKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHLTLQILTSDNESSQAALAQLRAQF 405 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH 438 M+DE+QD + Q I + + QP + ++GD KQ+IY FR AD ++ + Sbjct: 406 EEVMVDEYQDINSLQESILQLLARDQPG-NMFMVGDVKQSIYQFRLADPLLFLHKYHDFG 464 Query: 439 ------AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM----FREIPFIPVKSAGKNQALR 488 L N+RS + + N +FSQ DA + + E ++ + Sbjct: 465 TNPEHGERIVLAENFRSVANVDHLTNLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMP 524 Query: 489 -----FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNG 543 +++ ET + + + + + D + A +I Q Sbjct: 525 QTTNLLLYQTETDKSTEDVSTDETNFSIDDPAVGSITMVAQKILAL--KAQDKPIYERAN 582 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 + RP R SD+++LV +R + D IP V +++ + F+T E + M+ LL + Sbjct: 583 GEYRPFRYSDVALLVPTRNHNLTIIDVFKRYHIP-VVVNDAQNYFQTTEIRIMMALLSII 641 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEH--------------------------- 636 P ++ L + L + ++GL+ + L Sbjct: 642 DNPYQDIPLVAVLRSPIVGLDENQLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQV 701 Query: 637 --AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 + + + +R + R+ ++ ++ + + + G++R ++ + E Sbjct: 702 YAKIETFLTQLTEFRDLARRNQIVTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERA 761 Query: 695 -QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 + VR++ + + + E+D V ++TIH SKGLEYP+++ Sbjct: 762 YTYEQGSFKGLFQFVRFIRRM---QEKDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIF 818 Query: 754 LPFITNFRVQEQAF---YHDRHSFEAVLDLNAAPE----------SVDLAEAERLAEDLR 800 + + Q DR + + L+ + + + AE++R Sbjct: 819 VMDMDKQFNQTDTRSSALLDREAGIGITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMR 878 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH-----QSALGRLLQKGEPQDAAGLRT 855 LYVA+TR+ L +K SA R+ + Sbjct: 879 KLYVAMTRAQQQLYLVGTIKDIDTATEKWRQAFASDGRVLSAQARIAATNQLDWVGMAVM 938 Query: 856 CIEA----LCDDDIAWQTAQTGDNQPWQVNDVS----------------TAELNAKTLQR 895 A D+ ++ ++ D + EL + + Sbjct: 939 RHPAMKAYWGDEWPNYELTDDPTKLAVELGDATTVLAEQSEAVTDTQPDALELVEQQVTI 998 Query: 896 LPGDNWRVT---------------------SYSGLQQRGHGIAQDLM---PRLDVDAAGV 931 R S S +++ LM P + + Sbjct: 999 DVDQVTRDYLTTLLNFHYPHQASTTTTAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRP 1058 Query: 932 ASVVEEPTLTPHQF------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQ 985 S +L QF P A G+ H + E LD T+PV+ V+ ++ Sbjct: 1059 TSRFVTGSLELPQFLQTTQAPTSAEVGSATHLVLEQLDLTKPVNETTVQSTIDGLVANRV 1118 Query: 986 WEPVLTEWIT-----AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 + + I A Q+ L + + E+ F L I Sbjct: 1119 LTTNVAKLIAVDTIVAFYQSALGSQILD----NPAKVHREVPFSLLI------------- 1161 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 P E + ++ G ID L DYK++ + Sbjct: 1162 ----PARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV-----------KRP 1206 Query: 1101 AMQAHRYDLQYQLYTLALH-RYLRHRIADYDYE 1132 RY Q +LY AL Y Y Y Sbjct: 1207 EDLKTRYAGQVKLYAAALASMYPGKVTKQYLYS 1239 >UniRef50_B0NWV2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NWV2_9CLOT Length = 1188 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 216/1245 (17%), Positives = 412/1245 (33%), Gaps = 181/1245 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M + + + L+ A+AG+GKT + ++ + P+ V+ LL Sbjct: 1 MPWTKQQQKVIDQ-RDADILVSAAAGSGKTAVLVERIIQKITDE------KHPIDVDHLL 53 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT+AA E++ RI + + E Q + Sbjct: 54 VVTFTKAAAGEMKERIMAALDEKVREFPGN---------------------QHFVKQLSL 92 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRE 178 + +A + TIH FC ++ + G+ ++ S +R + D + Sbjct: 93 IHKAQITTIHSFCMNLIRDYFYVLGIDPNTAPGDEGRLSAIRKEILDDLLEEAYEKKEED 152 Query: 179 IAQVVFETWKGP-QALLRDINRYLQGEAPVIKAPPPDDETLA-----SRHAQIVAR---- 228 ++ G ++ + L A + P + Q Sbjct: 153 FINLIESYSPGKNDNIISEYILKLYENARSHREPEKWLDQAENNISVETKEQFDQAPFMK 212 Query: 229 --IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESL 286 + + A + +E + + + +I +E +L ES Sbjct: 213 IILRDARFSIDGAYDTIQEALELALSPGGPYFYEKTLRKDLEIIIKIKEAQTFSELCESF 272 Query: 287 EKFSQRFLEDRTKA----------GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIR 336 K + L R K + R+ + +D L A + I L I+ Sbjct: 273 VKMEKPRLSGRKKKTDEIDEMLQDQCKYERNQAYNLLDDLKAAYFYENESEIFHELRRIK 332 Query: 337 E--------------TVAREKRRRGELGFDDMLSRLDSALRSESGEV-------LAAAIR 375 +K+ + FDDM L E +A Sbjct: 333 SPLKGLIDLTRKFMIRYDEKKKNENIMDFDDMEHFALELLIDHYDEEGNPVPSKIAREKS 392 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKAR 434 + IDE+QD++ Q I R + + ++GD KQ+IY+FR A +++ Sbjct: 393 DGYEEIYIDEYQDSNYIQDAILRSVSKESEGGHNMFMVGDVKQSIYSFRLARPELFLEKY 452 Query: 435 SEVHAH------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALR 488 L N+RS ++ VN +F Q + V + Sbjct: 453 HGYQQKGEEYQLIELRNNFRSRSEVLTFVNDVFYQIMHEDLGNIEYTQNV---ALVPTME 509 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD--- 545 F + Q + + D A++ A +I + + + + Sbjct: 510 FEQGCDAQTELLLLESNEVKDSEEDAVILEARMIATRIHEMIDGEDPMMVTGKDEEGNMI 569 Query: 546 ARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 R + SDI +L+RS + A ++ L IP+ + +N+ F+T+E + +L LL V Sbjct: 570 LRKAKYSDIVILLRSMKTNAEVIQKELMNAGIPA-FANNQKGYFDTVEIRTLLSLLSVVD 628 Query: 605 TPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV-------------VEEFDGY 648 + L + L + M+G++ ++ L + ++ + +E D Sbjct: 629 NIYMDIDLAAVLRSPMIGMSEEELGRLKVDGEKDSLYECLCETKDKMEKSKKALELLDLL 688 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHAL 707 R + ++ + A G++R +IL + E +Q++ Sbjct: 689 RDAKTYLPLTQLIWLALEKSGYYHYAGAMPQGKKRQGNILMLVEQAKAFESSQIKGLFHF 748 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT---NFRVQE 764 VR++ Q + + D+ LV+I +IHKSKGLEYP+V++ I N R Sbjct: 749 VRFIEQCREY--DMDYGEANTMSEDQDLVRISSIHKSKGLEYPIVFVSKIHQKFNLRDGN 806 Query: 765 QAFYHDRHSFEAVLDLNAAPESVD----------LAEAERLAEDLRLLYVALTRSVWHCS 814 + F ++ + E L E+LR+LYVA+TR+ Sbjct: 807 GSMIFHGDYFIGADHIDPVYRTRKKTILKNLIKNQMTRESLGEELRVLYVAMTRAKEKLI 866 Query: 815 LGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGD 874 L ++ D + +A+ RL + ++ + + D + D Sbjct: 867 LTG----IKKDDIDWNAKGEVTAIDRLSGR---SYFDWIKKALPMIPKQDYRLKIYTLED 919 Query: 875 NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP------------ 922 Q + E+N + D + L++ ++ Sbjct: 920 LLWQQEGNELLHEMNRQIFYERLNDQIPNENVKALKESFAYHYRNEAETKGRLKYSVSEI 979 Query: 923 -----RLDVDAAGVASVVEEPTLTPHQFPRGASP------GTFLHSLFEDLDFTQPVDPN 971 D + +SV E F + GT +H +FE LDF++ Sbjct: 980 KRMSQAADTEEVMYSSVFMEKEKRIPSFVKKTERISAASKGTIIHKVFELLDFSKDYTMK 1039 Query: 972 WVREKLELGGFESQWEPVLTEWITA--VLQAPLNETGVSLSQLSARNKQ-VEMEFYLPIS 1028 + E +E + + + I +L +E G + + + + E +F I Sbjct: 1040 SLNEDIERWISLGKLKKEYEKVIYRKEILALTRSELGKRMKEAAQKKLLYKERQFVTGIP 1099 Query: 1029 EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088 + +++G ID+ F E + L+DYK++ + E Sbjct: 1100 ------------------FSDMDKEAKTDDFVVVQGIIDVYFEEEDKIILVDYKTDRVRE 1141 Query: 1089 DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYE 1132 + RY Q + Y AL + + + Y Y Sbjct: 1142 GEED---------ILIRRYRAQMESYQQALEKITGKCVKEIYIYS 1177 >UniRef50_B1I493 ATP-dependent helicase/nuclease subunit A n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=ADDA_DESAP Length = 1230 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 215/1279 (16%), Positives = 396/1279 (30%), Gaps = 227/1279 (17%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + L+ A AG+GKT + +R + + P+ V+ LLVVTFT AA AE+R R Sbjct: 18 EKNLLVAAGAGSGKTAVLVERVIRRI------SDPAAPVDVDRLLVVTFTNAAAAEMRKR 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 + + E +K L R + +A + TIH FC Sbjct: 72 VAEAL---------------------ERELEKHPGMPLLEHQLRLLPQADITTIHSFCAE 110 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCY--PLPREIAQVVFETWKGPQ 191 +L + + E ++ ++ LR + +F+ ++ +V Sbjct: 111 LLRRYHYLIDLDPEFRVADETEAAILRQETLEEFFEEQYRVITGDPDLEFLVEAYGGERD 170 Query: 192 AL-LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW----------RDAV 240 L L+++ L A P A+ A W AV Sbjct: 171 DLKLQNLVSGLHRFARSNPWPEAWLARAAAFGADPQGLDGDGPLAWGLRDLVGTGLEAAV 230 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS---------- 290 EL A +E++ ++ + +A P + Sbjct: 231 FELRAALEAAKAPGGPAVYADALAAEVEGTARLAGLVAGDWEPLRAAFLAFGFTPRLPAA 290 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALA--------------EIR 336 + ++ K R E I L + R + +A + Sbjct: 291 RAGVDQELKDLCSRCRKKAKERIQNLKETFFARRPEELLSEMAALGPAMRRLAALAADFG 350 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQDT 389 E K R + F D+ L + +AA +R + ++DE+QD Sbjct: 351 EAYRTAKLARNLVDFADLEHYCLQILLAPGSTPEAPVPSPVAAGLREYYVEVLVDEYQDI 410 Query: 390 DPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVH--------AH 440 + Q I R + L ++GD KQ+IY FR A+ +++ Sbjct: 411 NAVQETILRLVSRQDAAAPNLFMVGDVKQSIYRFRLAEPALFLEKYRAFDTGEDAGGARR 470 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK-----------SAGKNQALRF 489 L N+RS ++++VN +F + + + +G + Sbjct: 471 IDLSHNFRSRESIIHAVNAVFRRIMTPAVGELAYDTAAELVCGGTPAQLEGSGPPVEVHL 530 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQ----STMAQVCAAQIRDWLQAGQRGEALLMNGDD 545 + + + E + A++ A IR Sbjct: 531 LGAPTSVGRDTAGTADDEPDRSDEADLTAVQREARLVAGIIRRL-----------AGLGG 579 Query: 546 ARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 V DI VL+R+ A + IP+ Y FE +E + +L LL+ + Sbjct: 580 ECTVPYRDIVVLMRATTGKAGTYLEEFRRQNIPA-YAKVGTGYFEAVEVETVLSLLKVID 638 Query: 605 TPERENTLRSALATSMMGLNALDIETLNNDEHAWDV--------------------VVEE 644 P ++ L L + ++GL A ++ + + D +E Sbjct: 639 NPHQDIPLAGVLRSPLVGLGAAELAAVRLADKEGDFFRAVVAAAGQGGRLGAVLAGFLER 698 Query: 645 FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLES 703 + +R R + ++ + + + GG R ++ + + Q T Sbjct: 699 LEKWRSQARCGSLADLIWDVYRTTGYYDYVGGLPGGAGRQANLRALYDRARQYEATAFRG 758 Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763 +R++ +L+ L +++V+I++IH++KGLE+P+V L + Sbjct: 759 LFRFLRFIE--LLQEGGQDLGPAPALAESENVVRIMSIHQAKGLEFPVVILADMGRRFYM 816 Query: 764 EQA-------------FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 Y A + E+LAE++R+LYVA+TR+ Sbjct: 817 PDLNGEVLLHKDLGLGPYFVDPGARVSHPTAAWHVVRERLRREQLAEEMRILYVAMTRAR 876 Query: 811 WHCSLGVAPLVRRRGDKKGD-----------------------------------TDVHQ 835 L + + + + + Sbjct: 877 ERLILTGSAGRLEQAVLRWSHAAAGDGETLPVPVLAEAESFLDWVMPVLMAHPDGEPLRR 936 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 A+ G P+D + + D + A + ++ + + Sbjct: 937 LAVRSRPAAGTPKDRSRWEVHLHRPEDLEEAAGADPDTAAVLESLRRLAPIPADGGLDEA 996 Query: 896 LPGDNWRVTSYSGLQQRGHGIAQDLMPRL------DVDAAGVASVVEEPTLTPHQFPRG- 948 + +S L G I+ + R + P P Sbjct: 997 VHRALSWHYPWSALASCGAKISATEVKRRFAAAAAGEEEVPAVFPYRAPPARPAFLETAR 1056 Query: 949 ----ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE 1004 + G +H + + LD + + +R ++ I A A L Sbjct: 1057 GLSPQAFGRAMHVVLQHLDLAGDLSVDGIRAQVAGLEEREFLTATEARAIDAEKLAGLFA 1116 Query: 1005 TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 G+ A + E F L + I L+ + R M++G Sbjct: 1117 GGLGRRLAGALWVRREWPFCLVVPAHEIYPGLE----------------GHPEERVMVQG 1160 Query: 1065 FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 ID +F L+DYK++ +G A A RY Q LY A+ LR Sbjct: 1161 IIDCLFAEPDGLVLVDYKTDRVGPGG---------EAALADRYRGQLDLYARAVEAVLRR 1211 Query: 1125 RIADYDYEHHFGGVIYLFL 1143 R+ + YLFL Sbjct: 1212 RVKE----------RYLFL 1220 >UniRef50_Q03D71 ATP-dependent helicase/nuclease subunit A n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=ADDA_PEDPA Length = 1235 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 221/1276 (17%), Positives = 433/1276 (33%), Gaps = 221/1276 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + ++ ++ V+ LLVVTFTEAA +E++ RI Sbjct: 19 HNILVSASAGSGKTSVLVERVIQKIINGE---------DVDRLLVVTFTEAAASEMKERI 69 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 R+ I + + E +D L + +++ A + T+H FC + Sbjct: 70 RAAIVK----KINEVSDIEL--------------QNHFSMQLNKLNNANISTLHAFCMSI 111 Query: 137 LNLNAFESGMLFEQQLIE-DESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLR 195 + + + ++++ ES L ++ R Y + + Sbjct: 112 IRNYYYIIDLDPTFRIMDPTESELLKESVWADLREELYERDEDGKFALLTRNFSSDRSDE 171 Query: 196 DINRYLQGEAPVIKAPPPDDETLAS-------------RHAQIVARIDTVKQQWRDAVGE 242 + + A P L I + VK + + Sbjct: 172 GLQDLILELFEFSNANPDPQAWLQQIAKNYEVPSDNVMDMEFIQQLLTEVKTKLMRIYRK 231 Query: 243 LDALIESSGIDRRKFNRSNQA-----KWIDKISAWAEEETNSYQLPESLEKFSQ------ 291 L E + + + + I + Q S KF+Q Sbjct: 232 DLDLTEQAINGGEPLKNAAEKFQNEVDDLKTIIDSLNGSWDDVQQAVSKMKFAQLPRGKK 291 Query: 292 ----------RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL---AEIRET 338 + + + K T F+ + + ++ + + + E Sbjct: 292 EEVQEFNAYAKSIRNDFKDEFNTIADKYFKLSSEQMIAVFKDAHDLMMKLIEVQNQFAER 351 Query: 339 VAREKRRRGELGFDDMLSRLDSALRS--ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 +EK R L F D+ + E G+ + + +F ++DE+QD +P Q I Sbjct: 352 FLQEKLTRRSLDFSDLEHFALQIVLDDSEEGQAIRRDFQQKFNEVIVDEYQDINPLQETI 411 Query: 397 FRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKA------RSEVHAHYTLDTNWRSA 450 + P + ++GD KQ+IYAFR AD ++ + L N+RS Sbjct: 412 LTSVASPDPG-NMFMVGDVKQSIYAFRMADPSLFISKNNQFKDEEQADERIILAENFRSM 470 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 + + N +F+Q D E+ I + Q + E Q ++ + + Sbjct: 471 RNVDDFTNLIFNQVMD----TEVGEIEYDDDAQLQFGAKYYPDEVQNNTEVMIYDDSQTD 526 Query: 511 VGDYQST---------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 + D ++T Q+ A +I+ + R + SDI++L + Sbjct: 527 INDKEATPIISNKNDGQLQMIAQRIQKLFADHTQ--IYDKKEQKMRDLEYSDIALLHSTG 584 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 ++ D IP + ++N F+T E M+ LL+ + P ++ L + L + M+ Sbjct: 585 SNNLEIVDTFKKYGIP-IQVNNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPMV 643 Query: 622 GLNALDIETLN---NDEHAWDVV--------------------------VEEFDGYRQIW 652 GL ++ L + H ++ + +E+ D + ++ Sbjct: 644 GLKENELAFLRIGKKNGHYFEALLYFLNEAKLDSNNEFQMQLKTKITHFLEQLDHFSKLA 703 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWL 711 R+ ++ +L A+ + + G +R ++ + + + + + VR++ Sbjct: 704 RQSTLVDLLWAIYDETGYLDYVGGMPDGPQRQNNLHALYDRAKGYEESSFKGLFQFVRFV 763 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV---QEQAFY 768 + D N + + +D V+++TIH SKGLE+P+V+L + ++ + Sbjct: 764 EKMR---DKNKDLAENPVVTDVKAVKLMTIHGSKGLEFPIVFLIDAEHGFNTMDEKGRYV 820 Query: 769 HDRHSFEAV----------LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 DR + + +D + + + + LAE LR+LYVALTR+ + A Sbjct: 821 LDRDAGMGITLKDFIHRLEIDTVQKNWIISIKKQKALAEKLRVLYVALTRAEQKLIITGA 880 Query: 819 PLVRRRGDKKGDT--DVHQSALGRLLQKGEPQDAAGLRTCIEAL---------------- 860 K D ++ + + + I + Sbjct: 881 VNSADDTLNKWAEAVDTDETLIPAEARSKVSNFLDWIGMAIMRVPSVVEKYADYNTRKLQ 940 Query: 861 -------------------CDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 A ++AQ + Q D K + + Sbjct: 941 GTLIPDVELKIINSSELMDQQGLTALKSAQIPELQQLNAFDDIADVDKFKQIMNFKYHDE 1000 Query: 902 RVT------SYSGLQQRGHGIAQDLMPRLDVDAAG---------VASVVEEPTLTPHQFP 946 T S S +++ + + +VDA S++ + P Sbjct: 1001 AATTTTAYQSVSEIKRVFDDPDKFELNFSEVDADQHIKPQNRFVTESLMAPRFMNEATKP 1060 Query: 947 RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWIT-----AVLQAP 1001 + A GT H + + LD QP++ +++K+ + + I + Sbjct: 1061 KAAEIGTATHLILQQLDLNQPINETIIKDKIGELVMNRVLDEQVANRIRISTILDFFDSD 1120 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 L + ++ N E F L + + G P + Sbjct: 1121 LGQLMIN----HPENVHREEAFSLLLP------------------AKGLFPKVKGDDDVL 1158 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 + G ID F E R LLDYK++++ S + + +RY Q LY AL Sbjct: 1159 IHGIIDAYFEMEDRVILLDYKTDFVLPGSVEQGIEKVI-----NRYQGQVNLYAQALGSI 1213 Query: 1122 LRHRIAD-YDYEHHFG 1136 L+ + + Y Y G Sbjct: 1214 LKRPVNEKYLYLLSIG 1229 >UniRef50_A5ZW44 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZW44_9FIRM Length = 1233 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 216/1285 (16%), Positives = 430/1285 (33%), Gaps = 226/1285 (17%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + L ++ RP+ ++ LL++TFT AA E++ R Sbjct: 17 DRNILVSAAAGSGKTAVLVQRILSKIMDT------ERPVDIDRLLIMTFTRAAAGEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I ++ + L + A + TI GFC Sbjct: 71 ISAAIDQILYDNPDN---------------------EHLQRQASLIHNAQITTIDGFCAY 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCY----------------PLPR 177 ++ + + E+ L LR + Sbjct: 110 IIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEAAYARKGEKFLSLVECYATGKTDD 169 Query: 178 EIAQVVFETWKG------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 EI ++++ + P+ + + Q ++ P + + + + ++ Sbjct: 170 EIRDMIYKLYDASMSHPFPEEWIEECLEVYQVDSLEDLHDTPWMKLIWDAADESIVQVRE 229 Query: 232 VKQQ-------------WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETN 278 + + + A+ + L+ ++ ++ + + ++ + K +A T Sbjct: 230 LLSRAAAICREESGPYFYEAALDDDILLLRAAETAVKERDYNGFSELL-KNHKYARLSTK 288 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPL---SIRDLVITRALAEI 335 + +K + L D K F ++++ E L + + Sbjct: 289 KDLSVDEEKKIQVKDLRDSAKGLWNELTEKYFNQTEEMILEYLQYCRRPMEGLAEVTLQY 348 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVL-----AAAIRTRFPVAMIDEFQDTD 390 ++ A KR + L F DM L + G+ + A + R+ M+DE+QD++ Sbjct: 349 KDAFADRKREQNILDFTDMEHFALDILMHKEGDTITPSAAAWELSARYDEVMVDEYQDSN 408 Query: 391 PQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTL 443 Q I + + ++GD KQ+IY FR A +M+ L Sbjct: 409 LVQEMITNLVAGWADKRKNIFMVGDVKQSIYRFRLARPELFMEKYHSYSLEDSEEQRIDL 468 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS +++SVN LF Q + I + + + G+ +P ++ L Sbjct: 469 HKNFRSRGTVLSSVNYLFRQIMGEDLG-GITYEDENALYTGASFPERADGK-EPETEVLL 526 Query: 504 MEGESCGVGD-----YQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 +E + + + Q A A +I+ + E L + R DI +L+ Sbjct: 527 IEKDGEELEEQGNQTVQELEALAIAQRIQKLVG---IEEVLDKDSGTYRKAGYGDIVILL 583 Query: 559 RSRQ-EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 R+ A L IP VY ++R F E +L L+ P ++ L L Sbjct: 584 RTSAGWAEPFSQVLASKGIP-VYTASRTGYFAAQEVVTLLNYLRICDNPMQDIPLTGVLH 642 Query: 618 TSMMGLNALDIETLNND----------------------------EHAWDVVVEEFDGYR 649 +++ G N ++ + + +E + R Sbjct: 643 SAIGGCNTQELAIIRSKCPDGMLYESLLAFRERKTDDRDEEELVLREKISHFIELLEEMR 702 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALV 708 + V +++ ++ + + GG +R ++ + E + T V Sbjct: 703 DLAVYTPVHELIQYILRKTGYGDYVRVIPGGAQRGANLHMLVEKAMEYEKTSYRGLFNFV 762 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QE 764 R++ + L+ + ++ VQI+TIHKSKGLE+P+V+ + Sbjct: 763 RYIEK--LQKYEVDFGEVNLADAGNGAVQIMTIHKSKGLEFPIVFAAGMGKQFNFQDINS 820 Query: 765 QAFYHDRHSFE---------AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL 815 + H F +L + E L E+LR+LYVALTR+ + Sbjct: 821 RFLIHPDMGFGVDVILPEKRLILSTVHKQIIRRQLKRESLGEELRVLYVALTRAKEKLII 880 Query: 816 GVA---------------------PLVRRRGDKKGDTDVHQSALGR------LLQKGEPQ 848 + RG+ + AL R L ++ Sbjct: 881 TGTIAKLADVLQAVSWQMGRRETLLPIGTRGEARNYWSFILPALARHEAMLPLFREYGIA 940 Query: 849 DAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT---- 904 D +E A+ + D E K + + Sbjct: 941 DRQIQVCEMEHAEFKVQKITAAELVQGEILGQTDSQMQEKLLKEWDSRKIYDEEIHEILT 1000 Query: 905 -------------------SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF 945 S S L++R ++ L + + ++ + Sbjct: 1001 ERFAFRYPFEYLKDLPVKVSVSELKKRSWRGEEEKEESLFYE-PDIQEIIPTFVSGEKEE 1059 Query: 946 PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTE--WITAVLQAPLN 1003 RGA+ GT H L E LD+T D + +++++ + + P + I +L + Sbjct: 1060 YRGAARGTAYHRLMECLDYTHAEDVHQIQKQIRMLTDSRKMSPEEAQCIRIADILAFVDS 1119 Query: 1004 ETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGML 1062 + G + + +N E F + A +++ + ++ + ++ Sbjct: 1120 KLGQRMKTAAEQNALYREQPFVI-------AQKMNQIEAAWNG-----------EETVLV 1161 Query: 1063 KGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 +G ID F + L+DYK++ + Y +Q + Y AL R L Sbjct: 1162 QGIIDAYFIEDDEIVLVDYKTDKVSPGG---------EQDLIDLYHIQLEDYAAALERML 1212 Query: 1123 RHRIADYDYEHHFGGVIYLF-LRGV 1146 + ++ + IY F LR + Sbjct: 1213 QKKVKE--------TYIYSFTLRKM 1229 >UniRef50_B1HN90 ATP-dependent helicase/nuclease subunit A n=2 Tax=Bacillaceae RepID=ADDA_LYSSC Length = 1238 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 212/1280 (16%), Positives = 419/1280 (32%), Gaps = 234/1280 (18%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + + ++ A P+ V+ELLVVTFT A+ AE+R R+ Sbjct: 29 TLVSAAAGSGKTAVLINRMIEKVI------ATDNPINVDELLVVTFTNASAAEMRHRMSE 82 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + + + + L +++A + T+H FC ++ Sbjct: 83 ALEKAIVENPTSS---------------------HLRRQLSLINKAQISTLHSFCLAIVK 121 Query: 139 LNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKG-----PQ 191 A+ + ++ + LLR AD Q ++ Sbjct: 122 QYAYLLDIDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQVQAIYRLVDSFTSDRDD 181 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHA---------------------------- 223 + + L + V P +L + Sbjct: 182 QAIETLISKLYDTSRVHAEPQRWLWSLPKAYELAEEVTIDDLELSHYVKLTVRHSLEEAF 241 Query: 224 -------QIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 I + D A + + E I + + + + + Sbjct: 242 VLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQELFDYFATVKWSTLKRV 301 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAE 334 + + L++ +++ E K + +LL E + ++ + Sbjct: 302 SKDALVDVELQELAKKKREAAKKIMNKMKETYFIRTPARLLEEIRLMAPIIGTLVELTTI 361 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSE-----SGEVLAAAIRTRFPVAMIDEFQDT 389 E K RG + F D+ L E +A ++ RF ++DE+QDT Sbjct: 362 FSEQFRLAKLERGIIDFSDLEHYALQILTVEVDGELQPSPVALDLKKRFKEVLVDEYQDT 421 Query: 390 DPQQYRIFRRI-WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HY 441 + Q I + + + + L ++GD KQ+IY FR A+ +M+ SE Sbjct: 422 NMLQETILQLVKSGEEQDGNLFMVGDVKQSIYRFRLAEPKLFMRKYSEFLETPDATGMRI 481 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----------EIPFIPVKSAGKNQALRFV 490 L+ N+RS ++N N +F+Q + P+ + + + Sbjct: 482 DLNANFRSRKEVLNVTNYIFAQIMGERVGEILYDDNASLKPAAPYDEKEVPVELVVMHPP 541 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 ET + E A+ +IR ++ G RP++ Sbjct: 542 QDEETVDEQEDKTDEASELEELKKSQYEARFIIDRIRQMMEDGT--TVYDTKSMTERPLK 599 Query: 551 ASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPEREN 610 SDI +L+RS + + + L IP +Y + F+ LE +L +L+ V P ++ Sbjct: 600 YSDIVILMRSMTWSTDLVEEFKLAGIP-LYAESSKGYFDALEVMIILNVLKVVDNPYQDI 658 Query: 611 TLRSALATSMMGLNALDIETLNNDEH-------------------------AWDVVVEEF 645 L S L +GL ++ + + + F Sbjct: 659 PLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEGQGVQTTTFEKLQRFMLAF 718 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESE 704 + +R + R+ + ++ + + E + A G++R ++ + + L T Sbjct: 719 ENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANLRILHDRALMYEQTAFRGL 778 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE 764 +R++ + D + + +V++VTIH SKGLEYP+V++ + + Sbjct: 779 FRFLRFIDRMRTRGDDLGT--AKSIGEKDDVVRLVTIHSSKGLEYPVVFVAGMGR-PFNK 835 Query: 765 QAFYHD--------------RHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 F+H + E E AE++R+LYVA+TR+ Sbjct: 836 MDFHHPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMRAEEMRVLYVAMTRAK 895 Query: 811 WHCSLGVAPLVRRRGDKKGDTD------------VHQSALGRLLQKG------------- 845 L + + + A L G Sbjct: 896 ERLILVGSVKNWEKTRDNWQDAQNIPSDAPLQEYLRARANSYLDWIGPAVARHGDFASQA 955 Query: 846 ---------------EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNA 890 +P D I+A D+ T Q + ++ A+ Sbjct: 956 TTSYKELDSPSHWWIQPIDTRHYSYDIQAFNDEIQQHLTTQEDEALLSEIKARFHAQYTY 1015 Query: 891 KTLQRLPGDNWRVTSYSGLQQ--RGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRG 948 + R TS S +++ + S+ PT Q G Sbjct: 1016 QKSTRKRSK----TSVSEIKRLENLQRQEEPEYYFATPAKRTSTSIAPRPTFLQDQQLTG 1071 Query: 949 ASPGTFLHSLFEDLDFTQPVDPNWVREKLE-----LGGFESQWEPVLTEWITAVLQAPLN 1003 GT +H++ + + V+ + E++ + V + + + Sbjct: 1072 TEIGTAVHTVMQHIPQFGFDTIEAVKGFVANLVAKQLLTEAEGKVVPIKKVYHFFHTEIG 1131 Query: 1004 ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLK 1063 + Q+ + EM F + ++ +++ Sbjct: 1132 QRFKQARQI-----RREMPFTI-------------------------SRVDEDGDAQIVQ 1161 Query: 1064 GFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 G ID +F E G + LLDYK++ + + + A+ + RY +Q ++Y+ A+ L Sbjct: 1162 GIIDCLFEDEYGNWVLLDYKTDRILPHFA--KEPALTKEIMG-RYAVQLRVYSEAIESIL 1218 Query: 1123 RHRIADYDYEHHFGGVIYLF 1142 + ++++ V+YLF Sbjct: 1219 QIKVSEK--------VLYLF 1230 >UniRef50_A4IKW7 ATP-dependent helicase/nuclease subunit A n=94 Tax=Bacteria RepID=ADDA_GEOTN Length = 1242 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 213/1275 (16%), Positives = 420/1275 (32%), Gaps = 216/1275 (16%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + ++ + A + ++ LLVVTFT AA AE++ RI Sbjct: 29 ILVAAAAGSGKTAVLVERIIQKVT------AEEGAVDIDRLLVVTFTNAAAAEMKARIGE 82 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + E+ ++ + L ++ A++ T+H FC ++ Sbjct: 83 ALE--------------------RELANRPHSLH-LRRQLSLLNRASISTLHSFCLDVIR 121 Query: 139 LNAFESGMLFEQQLIEDES----------------------LLRYQACADFWRRHCYPLP 176 + + ++ ++ + + Sbjct: 122 KYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNERFFAVVDAYTGDRSDAEL 181 Query: 177 REIAQVVFETWKG---PQALLRDI-----------------NRYLQGEAPVIKAPPPDDE 216 +E+ ++E + P L D+ RY+ A + A Sbjct: 182 QEMILALYEFSRSHPAPDEWLADLVSMYDVDEQTNVETLPPARYIAQHAAMELAAAKRFI 241 Query: 217 TLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 LA A+ + +++ R+ + + L + + Q+ ++ + Sbjct: 242 GLALALAEKESGPKPYEKRLREDMDLIADLERRLSGSWDELYHALQSLSFGRLPPCRGDG 301 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALA 333 ++ + E + L D+ K E R +F + V I + Sbjct: 302 FDAELIDE------AKSLRDQAKKKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVR 355 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV-------LAAAIRTRFPVAMIDEF 386 KR +G + F D+ LR E A + +F ++DE+ Sbjct: 356 RFSAMFEAAKREKGIVDFSDLEHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEY 415 Query: 387 QDTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------ 439 QDT+ Q I + + L ++GD KQ+IY FR A+ ++ A Sbjct: 416 QDTNLVQETILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGG 475 Query: 440 -HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK---SAGKNQALRFVFKGET 495 L +N+RS +++ N LF+Q + + + A + V + Sbjct: 476 MKIDLASNFRSRAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGADYPEGTDAVPEVMI 535 Query: 496 QPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 + + E + +++ A +I++ + + + R DI Sbjct: 536 IDRQRTSEEDEEETAELEAAELESRLMAEKIKEIVS--RPFYVYDRSSGQQRRAMYRDIV 593 Query: 556 VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 VLVRS A Q+ + L IP+ F+ E ML LL+ + P ++ L + Sbjct: 594 VLVRSMTNAPQMIEQLQAQGIPA-AADLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAV 652 Query: 616 LATSMMGLNALDIETLN--------------------------NDEHAWDVVVEEFDGYR 649 L + + + ++ + N + + + + +R Sbjct: 653 LRSPLFRFDENELAMIRLSDPKGTFFEALQAFCQKTAETGEEENAKEKAISFLNKLEEWR 712 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALV 708 + R+R + ++ L + + A GG++R ++ + + Q T + Sbjct: 713 TMARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFL 772 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA-- 766 R++ + L+ + L + +V+++TIH SKGLE+P+V+L + Sbjct: 773 RFIER--LQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPIVFLVGLARPFYTRDLHS 830 Query: 767 -------------FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 F H R E LAE++R+LYVALTR+ Sbjct: 831 PYLLDKELGFAARFVHPR--LRISYPTLPLLAIQVKKRLELLAEEMRILYVALTRAKEKL 888 Query: 814 SLGVAPLVRRRGDKKGDTDVHQS-----------------ALGRLLQKGEPQDAAGLRTC 856 L + + +K +S +GR L + + Sbjct: 889 YLLASVNDADKEIEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDGRSLVEVNR 948 Query: 857 IEALCDDDIAWQ---------------------------TAQTGDNQPWQVNDVSTAELN 889 + + W+ + + + L Sbjct: 949 PDEIASHPSVWRFEIVSAAKLRNAEVSTDREDGGALVALEQGRPVPTQGEWEEEARRRLL 1008 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGA 949 + S S L+++ + L G A + P + A Sbjct: 1009 WRYRYGKETVVRAKQSVSELKEQQALFGEQADEWLPRK--GTAPLFSRPRFMQEKTLTPA 1066 Query: 950 SPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWIT--AVLQAPLNETGV 1007 GT LH + LD P+D + +R ++ + E + A++ + G Sbjct: 1067 EKGTALHVVMRHLDLHAPMDESSIRSQIIRLVEKELLSAEQAETVDAAAIVAFFATDIGR 1126 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 L +AR E+ F L + + R +++G +D Sbjct: 1127 RLC--AAREVYREVPFSLGLPADEL----------------YGSEGMESGRRLLVQGVVD 1168 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 VF E Y ++DYK++ + + ++A RY Q +LY A+ + R +A Sbjct: 1169 CVFADERGYVVIDYKTDEVTGRFAGQKEEATR--FLLGRYGGQMRLYRRAIEQIWRVPVA 1226 Query: 1128 D-YDYEHHFGGVIYL 1141 + Y Y G +L Sbjct: 1227 ECYLYSFD--GEYFL 1239 >UniRef50_B1YKM8 ATP-dependent helicase/nuclease subunit A n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=ADDA_EXIS2 Length = 1183 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 224/1222 (18%), Positives = 422/1222 (34%), Gaps = 166/1222 (13%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + + ++ PLT + +LV TFT AA E++ R+ Sbjct: 18 GHILVSAAAGSGKTAVLVERLTQRVINQ------EDPLTADRILVATFTNAAAKEMKTRV 71 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 I A ++ D+ +L + M+ A + TIH FC + Sbjct: 72 IEAI----EAKIKVAPDDL-----------------YLKKQRQMMNRAQITTIHSFCLSI 110 Query: 137 LNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQVVFETWKGPQA-- 192 L N + G+ ++ E+ LL Q + + +++ Sbjct: 111 LRENYYRIGLDPAFRIAEEAELLLLQDDVLEEVFESFYASADPAFYELIDSYTSDRDDQA 170 Query: 193 ---LLRDINR-----------YLQGEAPVIKAPPPDDETLASRHAQI--------VARID 230 L+ ++ R Y A + PD+ +L +R ++ + R Sbjct: 171 MLTLISNLYRFSRSLPDPEAFYDHLIAQYDQPIDPDESSLLTRLFELEWERVGPVINRYM 230 Query: 231 TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP------E 284 + + R + + A + + + Q +W A+ E ++ + Sbjct: 231 ELSYRLRQSGYDEMADLLVQDVTPVRRINPEQDRWTTVALAFQAVEFGRWKGIRGDEEMK 290 Query: 285 SLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKR 344 + R + D K + ++ L ++ + +I + K+ Sbjct: 291 KFQTERTRLVSDLKKMRDLFVEKDGVDYLEDLRSQLGHV--EMIVTLVRSFSAAYLEAKQ 348 Query: 345 RRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 +RG + F D+ + L +A ++ RF ++DE+QDT+ Q RI R + Sbjct: 349 QRGIVDFSDLEHFALAILEENGEPTDVARLLQERFIEVLVDEYQDTNEVQERILRLVSKS 408 Query: 404 QPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-----HYTLDTNWRSAPGMVNSV 457 L ++GD KQ+IY FR A+ ++ L N+RS +++ Sbjct: 409 DEATGNLFMVGDVKQSIYKFRHAEPGLFLNKFKRFQQTEVGTRIDLTKNFRSRLEVLDGT 468 Query: 458 NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQST 517 N +F Q D + I A + + TQ ++ L++ + Sbjct: 469 NHIFRQVMDEAVGE----IDYDEAAYLRLGNLGYVDSTQVDPELLLVDQTDTNK---EEL 521 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR-QEAAQVRDALTLLEI 576 AQV A +I + + R DI +LVRSR + + D E+ Sbjct: 522 EAQVIATRIIEMVNDENPYLVFDAKQKRFRKCEYRDIVILVRSRGKRVQALVDVFEQYEL 581 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---N 633 P VY F+ E Q M+ LL+ + P ++ S L + + GL D+ + Sbjct: 582 P-VYADTTGGYFQATEIQIMMSLLKTIDNPLQDIPFASVLRSPIFGLTDRDLGRIRAKSK 640 Query: 634 DEHAWDV-----------------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 D ++ + + +R R + + ++R+L E + Sbjct: 641 DGSFYEAAILVAKEQTPLGLRVDEALNQLHHWRTEARGKSLASLIRSLFDQTGYFEYVGC 700 Query: 677 TAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735 GG R ++ + E Q + + +R + + + + S+ L D+ + Sbjct: 701 LNGGRSRQANLNALYERAHQYEASGYRGLYRFLRLIHRLVERGE--DFSEARSLGEDEDV 758 Query: 736 VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDL------ 789 V+I+TIH+SKGLE+P+ + + ++ + + L+A L Sbjct: 759 VRIMTIHQSKGLEFPVTIVSQLGKQFNKQDQIQAIQLHKTYGIALDAIDPVKRLRSGTLL 818 Query: 790 -------AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLL 842 + E AE++R+LYVA+TR+ L A K L + Sbjct: 819 KEVIRREMDREMKAEEMRVLYVAMTRAKEKLILVGAIKGLEDQLIKWQDQPLDELLLPEM 878 Query: 843 QK------GEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 + + A LR + + +++ + P+Q +L + Sbjct: 879 DRRNAKTYADWVVPAVLRNFLLSEDGPRWSFRIIALDEIAPYQELTKMVEQLEHVRVLEK 938 Query: 897 PG------------------DNWRVTSYSGLQQRGHGIA-QDLMPRLDVDAAGVASVVEE 937 ++V + + +Q + + + R ++ S Sbjct: 939 IDHAGDETLNIQIEAAFAYQYPYQVATDTAAKQTVTELKRTEQLERAAFESTHRQSTYYR 998 Query: 938 PTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAV 997 GA GT LH + + + + + + + S + E I Sbjct: 999 TPQFLGPTLTGAERGTVLHLAMQLYESGRSFEEQILDWE-QAERISSLEAQTMREAIPE- 1056 Query: 998 LQAPLNETGVSL--SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF 1055 L L L +L A E+ F I + Sbjct: 1057 LTTFLASDTGQLFEQRLLAGEVYRELPFTYKIDS-----------------ARFRSDWHG 1099 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 + +++G +D + R Y LLDYKS+ + E + Q A + RY Q LY Sbjct: 1100 PSDQAVMQGIVDCLIRDGDTYILLDYKSDQVFETTDNQNQ----AEVLRTRYATQLNLYQ 1155 Query: 1116 LALHRYLRHRIAD---YDYEHH 1134 AL L RI+ Y + H Sbjct: 1156 EALEAILHIRISRKLIYAFALH 1177 >UniRef50_B2A610 ATP-dependent helicase/nuclease subunit A n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=ADDA_NATTJ Length = 1282 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 209/1292 (16%), Positives = 425/1292 (32%), Gaps = 222/1292 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ A AG GKT + + L+ LTV LLVVTFTE A E+R RI Sbjct: 25 HHILVSAGAGAGKTAVLVQRIISKLIDPHDD------LTVNGLLVVTFTEKAANEMRDRI 78 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + L +++A + T+H FC + Sbjct: 79 ARELKKALSQDPEND---------------------HLKKQLYLLNKANISTLHSFCLEI 117 Query: 137 LNLNAFESGMLFEQQLIEDES-LLRYQACADFWRRHCYPLPREIAQVVFETW---KGPQA 192 L + + + + L Q+ D + Y L + ++ +++ K + Sbjct: 118 LRHYFYYLDIDPAFSVASEYDVELLRQSVIDNYLEEEYGLGEQSFYLLVDSYGGDKNDEK 177 Query: 193 LLRDI-------------NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239 L + I ++LQ + DD T + +I I+T+ +Q + Sbjct: 178 LKKMILTLHRFSRSHPRPRKWLQSVKDHFEVSTDDDLTNTVYYLEIQKDIETLFKQCINY 237 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF---------- 289 E G + I+++ + ++ F Sbjct: 238 FKRALQTSEQPG--GPYQYAETLLEEIEQVQNFTQQLVEVENHSFDWNSFAERVAGFKFS 295 Query: 290 ------------------SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--IT 329 ++ + K + ++ + D+LL + + L+ + Sbjct: 296 KLPSVSKNDDVDEDLKKDCKKLRDHGKKTFQKLVQNYFTRSKDELLRDLQQLSPLMNKLI 355 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 + + + K++RG + F D+ + L + + + + R+ M+DE+QD Sbjct: 356 DMVINMDDKYEEVKKQRGIMDFSDLEHYVYELL--DQYPEIVSELHQRYDEVMVDEYQDI 413 Query: 390 DPQQYRIFRRIWHHQP-ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YT 442 + Q I ++ Q L ++GD KQ+IY FR A+ ++ Sbjct: 414 NQVQNAILEKLTGQQSISPDLFMVGDVKQSIYRFRLAEPELFLNKYDTFDQRSEEGSLIE 473 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK--SAGKNQALRFVFKGETQPAMK 500 L N+RS+P ++ SVN LFS+ + VK A K + L + Sbjct: 474 LQENFRSSPMVLESVNYLFSRIMTGSLSGIEYNEKVKLIPASKPRELYLNEDDNEDDKYE 533 Query: 501 ----------------MWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD 544 L ++ + AQ+ A I ++ + + D Sbjct: 534 GQAENENQVIDGRTEVHLLENKDTNSREEDTEREAQLIATTINSLVE--EEYRIYDRDLD 591 Query: 545 DARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 D R + SD +L R ++++A V + +P +Y F E Q ML LL+ + Sbjct: 592 DYRKLDYSDFVILSRKTKEQAELVTNVFQEHGVP-LYAELDTGYFAAQEVQVMLSLLKII 650 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWD------------------------ 639 P ++ L L + ++GL++ ++ + D Sbjct: 651 DNPRQDIPLAGVLRSPLVGLDSNELVEIRRSNPGTDYYEACKRVLTNSIEQQNQCSEKTI 710 Query: 640 ----VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LL 694 + + +R+I R+R + ++ + + + + GG R ++ + L Sbjct: 711 QKMQKFFSQLERWRRISRERSLAELIWDIYQITDYLDYVAGFPGGRERQANLWSFYDRAL 770 Query: 695 QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 Q + ++ + + + + + ++++V++++IHKSKGLE+P+V++ Sbjct: 771 QFDSFSHSGLVKFLNFIEKLVEQ--DFDLGKARTVSENENVVRLMSIHKSKGLEFPVVFV 828 Query: 755 PFITNFRV----QEQAFYHDRHSFEAVL-DLNAAPESVDLAE--------AERLAEDLRL 801 + N + H L DL + +A E LAE++R+ Sbjct: 829 MGLGNNFNFNDQKGDLLLHKDLGLGPKLVDLTNRIKYPTIAHQAIKGSLGRETLAEEMRI 888 Query: 802 LYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ----SALGRLLQKGEPQDAAGLRTCI 857 LYVA+TR+ L + + + L + Sbjct: 889 LYVAMTRAEEKLFLVGSGKDIESKISVPEEPAAAQNYLDWIYPQLGEDSELFHKIWNDIP 948 Query: 858 EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT------------- 904 + + ++ Q + + +R + Sbjct: 949 GQQDGKSVEYNWKSYFESLLSQTFTWEVDQEEFEDQKRTLEQAISYSYPYNIATEIVGKM 1008 Query: 905 ---------------------SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE------ 937 S S +Q +A +P E Sbjct: 1009 SVTDLAKSDTYIDSKIVSQNQSLSSVQDHYKKLAATQIPMFLETTEDAGDNKYESYKEHH 1068 Query: 938 PTLTPHQFPR------GASPGTFLHSLFEDLD---------FTQPVDPNWVREKLELGGF 982 +F + GA GT +H F+ L F++ N + + + Sbjct: 1069 TPSKRPEFLKSNSGLTGAEAGTSIHLAFQHLPINSDLNSQEFSEEQISNQLDDLVNKEII 1128 Query: 983 ESQWEPVL-TEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 V+ + I Q+ L + + + + E+ F L + + + + Sbjct: 1129 TQAQRDVISEDLIMKFFQSELGQAILE----RPKGLKRELPFTLGVPAWEMLAGSEECQA 1184 Query: 1042 QFDPLSAGCPPLEF-MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 + + + L+ +++G ID +F YYL+D+K++ L + ++ + Sbjct: 1185 ELEAENIETTELQGLSDETVVIQGVIDYLFWDGTNYYLIDFKTDKLNTSNMDEIEKRLQG 1244 Query: 1101 AMQAHRYDLQYQLYTLALHRYLR-HRIADYDY 1131 +Y +Q Q+Y A+ Y Y Sbjct: 1245 -----KYRMQIQMYLRAITEIFNITPTKAYLY 1271 >UniRef50_A6TVN2 ATP-dependent helicase/nuclease subunit A n=2 Tax=Alkaliphilus RepID=ADDA_ALKMQ Length = 1197 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 213/1271 (16%), Positives = 426/1271 (33%), Gaps = 218/1271 (17%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M + LI A+AG+GKT + ++++L + ++ LL Sbjct: 1 MKNWTTEQQAAIDARGSNLLISAAAGSGKTAVLVERIIQIILKD--------KIDIDRLL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT AA E+R RI I +EE++ K + L Sbjct: 53 IVTFTNAAAGEMRERIAGAI--------------------MEEMERKTEQEAHLRRQINL 92 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPRE 178 ++ A++ TIH FC ++ + + ++ + + S++R +A + + Sbjct: 93 LNRASITTIHSFCIDVVRRHFHIIDVDPGFRIGDITETSIMRLEALEELFEEEYQGAHET 152 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW-- 236 ++V + R + + I++ P + L + I+ + Sbjct: 153 FFRLVEAFGGTKED--RPLQDLVLKVYGFIQSQPYPEVWLKEKVGDFSLSIEDFDESLWI 210 Query: 237 --------RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 G +D L + I + + I E +S LP + Sbjct: 211 KTIKSRIEIQLKGAMDLLNNALSIAQEPGGPEVYEEAILSDLGQISELYDSLTLPITSFY 270 Query: 289 F----------------------SQRFLEDRTKAGGETPRHPLFEAI-DQLLAEPLSIRD 325 + L D+ K + + +F + + + + Sbjct: 271 EHLNHINHARLKPSKESDPVLKEESKNLRDKAKGIIKDIKDNIFTVSPEAYVEDLNKLHP 330 Query: 326 L--VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMI 383 L + + + A++K RG + F+D+ L +E ++A + RF + Sbjct: 331 LMDYLYQLVTGFTSRYAQKKADRGIVDFNDLEHYGLEILANE---LVAQEYQQRFEYIFV 387 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----- 438 DE+QD++ Q + + I L ++GD KQ+IY FR AD +++ Sbjct: 388 DEYQDSNIVQETLIQSIKRKD---NLFMVGDVKQSIYRFRLADPSLFIEKYETFGEKEGD 444 Query: 439 --AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ 496 L N+RS ++ VN LF + EI + + + F+ + Sbjct: 445 INRRIDLAKNFRSRGEVLAGVNYLFKYIMSKELG-EIGYDHRAALYQGA----SFESIKE 499 Query: 497 PAMKMWLMEGE---------SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 P++++ L+E A++ A +I+D L E + R Sbjct: 500 PSIEVNLIEKNMEIDEDIEEELQELADIEVEARIIAKRIKDLLNE----EIYDEKNEVYR 555 Query: 548 PVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 + DI VL+R ++ A +A IP+ Y FE +E L LL+ + Sbjct: 556 RLEFKDIVVLLRTTKNWAQSFLEAFIREGIPA-YADANTGYFEAIEVGMFLNLLKVIDNK 614 Query: 607 ERENTLRSALATSMMGLNALDIETLN---NDEHAWDV------------------VVEEF 645 ++ L S + + + ++ + + +D +E+ Sbjct: 615 RQDIPLISVMRSPIGEFTTAELIDIRINDKNGTYYDAIEKYIEKNEDALKDKLVSFIEKL 674 Query: 646 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESE 704 + + R + + L+ + A GG +R ++ + + + T ++ Sbjct: 675 NKWGNEARYIKIDQFIWKLLMDTGFYYYVGAMPGGLQRQANLRILFDRASQFEKTSIKGL 734 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV-- 762 ++++ + L+ L + ++V+I++IHKSKGLE+P+V + Sbjct: 735 FNFIKFIEK--LQGSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVIAAGMGKNFNLR 792 Query: 763 --QEQAFYHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 H D A D + E L+E++R+LYVA TR Sbjct: 793 DTSADVLLHKDLGLGPKFVDSNLRTYRDSIAKLAMKDQIKIESLSEEMRILYVAFTRPKD 852 Query: 812 HCSLGVAPLVRRRGDKKGDTD----VHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAW 867 + + R + +A L G + L D + Sbjct: 853 KLIIVGSLRKIDRLVTNWNQADNIYSLMNAKSYLDWIGAALIKHPHGEVLRELGDFEFN- 911 Query: 868 QTAQTGDNQPWQVNDV-STAELNAKTLQRLPGDNWR-------VTSYSGLQQRGHGIAQD 919 + ++ W VN + A + + +RL + ++ +S R ++ Sbjct: 912 ELKYKAEDSKWTVNILGRQAVVLEEHEKRLKEEEYKEKLTHFNREDFS--PHRHTEHKEE 969 Query: 920 LMPRLDVDAAGVASVVEEPTLTPHQFPR------------------------------GA 949 + RL+ + V L+ + A Sbjct: 970 IDNRLNWQYPYPQATVIPSKLSVSDIKKANMGEMDSIVHQIPTLVKTPKFMEGKKALTAA 1029 Query: 950 SPGTFLHSLFEDLDFTQPVDPNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNE 1004 GT +H + + L Q + ++++L E + + V I ++ + + Sbjct: 1030 ERGTIIHFVLQHLALNQVGSEEEISQQIDLMVARELITEEEAQVVNVGKIVNYFKSEIGK 1089 Query: 1005 TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 L A E F + S + L + + + +++G Sbjct: 1090 RM-----LGAEKVYRESPFIIEKSAKDVIHGLSENL----------------EEKLLVQG 1128 Query: 1065 FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH 1124 ID F L+DYK++ + A RYD+Q +Y AL R Sbjct: 1129 VIDCYFEEMDGLVLVDYKNDIVLNGD---------TASIMTRYDVQLMMYAEALERITGK 1179 Query: 1125 RIAD-YDYEHH 1134 ++ + Y Y Sbjct: 1180 QVKETYLYLFD 1190 >UniRef50_C8ZW81 UvrD/REP helicase n=4 Tax=Enterococcus RepID=C8ZW81_ENTGA Length = 1226 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 215/1246 (17%), Positives = 417/1246 (33%), Gaps = 195/1246 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + L ++ELL+VTFTEAA E++ RI+ Sbjct: 27 NLLVSASAGSGKTTVLVRRVIEKL---------KAGSQIDELLIVTFTEAAAREMKERIQ 77 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + Q Q + + + A + T+H FC ++ Sbjct: 78 VALQTAINQ------------------ESQEQKRQHFVRQLQLLPTANISTLHAFCLTVI 119 Query: 138 NLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGP--QAL 193 + + +++ DE+ L + R Y E + E + Sbjct: 120 RRFYYLIDLDPGFRMLTDETEILLLKEEIWTQLRDAHYEANDEAFFRLTENFASDRSDET 179 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA------RIDTVKQQWRDAVGELDALI 247 + D+ L A P + LA + +K + + L+ Sbjct: 180 VGDLILSLYDFARANPDPEKWLDGLAVNYEAADNLGENHLYQAQIKPTLVEIAATAEHLL 239 Query: 248 ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE---DRTKAGGET 304 ++ + +A + + +E + L R DR + + Sbjct: 240 AAAKQFADQSPLMEKAAALVQAEISQVQEIQRVLATDDLSVLYDRLTHLTFDRYPSYRKE 299 Query: 305 PRHPLFEAIDQLLAEPLSIRDLV------------------------ITRALAEIRETVA 340 + L + I L + + + + + E Sbjct: 300 EQKELSQEIKPLRDDAKKLLEQLKGYFPYPPADMLQMLQLSEPIVATMAEMTKEFLTAFQ 359 Query: 341 REKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 K +G L F+D+ L + G + R +F ++DE+QD + Q I Sbjct: 360 ARKLAKGLLDFNDLEHFTLKILLGDGTGSDASVYYRDKFEEVLVDEYQDINRLQEAILYW 419 Query: 400 IWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKAR-----SEVHAHYTLDTNWRSAPGM 453 + + ++GD KQ+IY+FR AD +++ L N+RS + Sbjct: 420 VRQVSGDHGNMFMVGDVKQSIYSFRLADPTLFIEKYLAFEHQNGGRRIVLAENFRSRREV 479 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG--- 510 ++ N +F Q D ++ IP A F ++ + E E+ Sbjct: 480 LDFTNLVFQQLMD----EQVGQIPYDDAAALVPGFPSFHESDAFIPELLIYEKEAESTTN 535 Query: 511 -VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 + D V A +I++ +Q+ + + RPV DI +L +R+ + D Sbjct: 536 LIEDKTEGELHVTAIKIQELIQS--QFMIYDKKRREERPVTYQDIVLLTPTRKNNLVILD 593 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 IP + +++ + F+ E Q M+ LLQ + P ++ L + L + M+GL ++ Sbjct: 594 VFKKFGIP-LEVNDAQNYFQATEIQTMIALLQIIDNPYQDIPLVAVLRSPMVGLTEDELA 652 Query: 630 TLNNDEH------------------------AWDVVVEEFDGYRQIWRKRGVMPMLRALM 665 + + D + E + +R+ R+ + +L + Sbjct: 653 EIRLADRTSEFYKAVLTYQDNQKGTVSALSKRVDDFLSELNRWREAARRLPIPNLLWDIY 712 Query: 666 SARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHILEPDSNASS 724 + ++ G++R +++ + + + + +R++ + + A Sbjct: 713 DTTAYLDYVVGLPAGQQRYANLIALIHRAEKYEKSSFRGLYQFIRFIEKMQEKDKDLAEP 772 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--AFYHDRHSFEAVLDLNA 782 E + V+++T+H SKGLE+P+V+L T F + Y A + Sbjct: 773 LATPAE---NAVRVMTVHASKGLEFPVVFLLDTTKFFNYQDFQKRYIFEEQLGAGIQYID 829 Query: 783 APESVDLAE-----------AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831 A E++ + L+E++R LYVALTR+ L + R+ K Sbjct: 830 ASENIKYETIPFQAIKQVRLKKALSEEMRKLYVALTRAEQKLYLVGSYKDRQAAFKAWQA 889 Query: 832 DVHQS-----ALGRLLQKGEPQDAAGL------------------------------RTC 856 + QS RL+ +G D GL Sbjct: 890 GLTQSQTVLDPALRLVARGSLMDWVGLTLIRHPEMEQVFTDASERKMTIHHPARFQIHWW 949 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY---SGLQQRG 913 + D + Q P LN Q + TSY S L++ Sbjct: 950 NQDQIDQQLQVQPPTEAVVAPTPSTTAPERLLNRLDYQYPYSKATQTTSYQSVSELKRLY 1009 Query: 914 HGIAQDLMPRLDVDAAG----------VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD 963 + + L+ +A V + + +P Q P+ +S G+ H + + L Sbjct: 1010 NDPDDQDITLLEWHSADQKLAPQRFRYVETELAKPRFLQEQKPQASSIGSATHLVMQMLP 1069 Query: 964 FTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLS-ARNKQVEME 1022 T+ + ++ + + + I +T V + + A + E Sbjct: 1070 LTEVPTEASLAAFIDELVERQLFTKDVADKIDQASIVWFYQTAVGQTLIKYATQVKREQP 1129 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 F + I D ++ G ID R L D+K Sbjct: 1130 FSMLKEAATIFEGFDE-----------------PDAELLIHGIIDGYVELPDRIILYDFK 1172 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 ++ + + +A RY Q +LY AL + L+ + + Sbjct: 1173 TDAV------FGSEAQIEKRMRDRYYGQLKLYCQALEQALQKPVTE 1212 >UniRef50_A5HYY0 ATP-dependent helicase/nuclease subunit A n=11 Tax=Clostridia RepID=ADDA_CLOBH Length = 1279 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 213/1311 (16%), Positives = 430/1311 (32%), Gaps = 268/1311 (20%) Query: 29 KTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACL 88 KT + + +L G P+ +++LLVVTFT AA AE+R RI I + Sbjct: 31 KTAVLVQRIIEKILDKG------EPIDIDKLLVVTFTNAAAAEMRERIGDAISK------ 78 Query: 89 RETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLF 148 D+ ++ L ++++ + TIH FC +++ N + Sbjct: 79 ---------------GLDEDPESKVLRKQLTLLNKSNIMTIHSFCLQVIKNNFHTMEIDP 123 Query: 149 EQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAP 206 ++ ++ L++ +A + + + +V L+++ L A Sbjct: 124 NFRICDETEGILMKQEAIDELFDELYEIENEDFINLVESYASRKDTRLQEVVLELHRFAK 183 Query: 207 VIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGID------------- 253 +A + + + W D + E ++ + Sbjct: 184 SAPFSYDWLLNMAEEF-NVGEEFNFEETPWADMIMEDMKVLLHGFKNMLQQSIDVILNSE 242 Query: 254 RRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH------ 307 + + I++ E+ + E + + R K + + Sbjct: 243 GIDYYYEPFKMDLSFINSLLEKSSFKEFRGEIIAYDFPKLPLKRNKDADKEAKERVKKLR 302 Query: 308 --------PLFEAIDQLLAEPLS-------IRDLVITRALAEIRETVAREKRRRGELGFD 352 L +D E + ++ + + +KR R + F+ Sbjct: 303 DKVKKKIVELKNILDSYENEFIKKEFIFLYPSMKALSNLVILFDKKYEAKKRERDLIDFN 362 Query: 353 DMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---- 402 D+ S L ++ +A R +F +IDE+QD++ Q I + Sbjct: 363 DIEHLCLSILTDKNSEGHIIPSDIALDYRKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGY 422 Query: 403 ----------HQPETAL------------LLIGDPKQAIYAFRGADIFTYMKARSEVH-- 438 ++ E L ++GD KQ+IY FR A ++ +E Sbjct: 423 WSFYNGQLMFNEEEINLEEPQICLDIPNRFMVGDVKQSIYRFRQAKPEIFLDKYNEYSEE 482 Query: 439 -----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG 493 L N+RS ++N VN LF Q + I + + + Sbjct: 483 EGTKNRKVKLFKNFRSRKEVINGVNYLFKQIMS----KTIGELDYTEEEALKVGASYGEE 538 Query: 494 ETQPAMKMWLMEG--------------ESCGVGDYQSTMAQVCAAQIRDWLQAGQRG--E 537 +++ LM+ + D ++ A +I+ + G + Sbjct: 539 VKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKKIQKLVGNNLEGGLK 598 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEM 596 + R ++ DI +L+R+ A + + L IP V+ F+T E + M Sbjct: 599 VFDKKLGEYRNLQYRDIVILMRATSNWAPIFVEELAKEGIP-VFADTNSGYFDTAEIKTM 657 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLN------------------------ 632 + LLQ + P ++ L S L + + ++ + Sbjct: 658 ISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNITFYECMEIIYRLYKNEKL 717 Query: 633 --------NDEHAWDV---------------VVEEFDGYRQIWRKRGVMPMLRALMSARN 669 DE+ + +E+ +R+ + + L Sbjct: 718 DSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSIHIDIDEFIWFLYVETG 777 Query: 670 IAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMR 728 A GE+R ++ + + Q A T + + ++++ L+ S Sbjct: 778 YYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFINK--LKFSSGDMGSAKI 835 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEA-------- 776 L ++++V+I++IHKSKGLE+P+V L + +H + Sbjct: 836 LGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGYGPDYVDTERR 895 Query: 777 -VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 + E L+E++R+LYVALTR+ + + + Sbjct: 896 IAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINNMDKTVEDWLNLSED 955 Query: 836 ----------------SALGRLLQKGEP----QDAAGLRTCIEALCDDDIAWQTAQTGDN 875 +G L K + ++ + + + + DD W+ Sbjct: 956 KNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFREELKMTSELSNIVDDKSKWKIELWNKR 1015 Query: 876 QPWQVNDVST----AELNAKTLQRLPGDNWRVTSYSGLQ-QRGHGIAQDLMPRLDVDAAG 930 + + +E +TL L N++ Y L + + A + +L V Sbjct: 1016 ELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRLSFKYKYDNASSIPTKLSVSDVK 1075 Query: 931 VASVVEEPTLTPHQFPRGA----------------SPGTFLHSLFEDLDFTQPVDPNWVR 974 +++E T F + GT +H + LD + + ++ Sbjct: 1076 KQFILDEKENTEELFKKLELRKPMFMEEKKKISPSERGTIIHLFMQHLDLKKAENEEDIK 1135 Query: 975 EKLELGGFESQWEPVLTEWI---TAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 E++ E ++ + +L+ E G + L++ N EM F + I Sbjct: 1136 EQINRL-IEREFITYEQSKVINPYKILKFCRGELGKRI--LNSNNVNKEMPFSIEIPALE 1192 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 I +LD I + + +++G ID F E LLDYK++++ + Sbjct: 1193 IYKELDKEI--------------YKDEKLIIQGVIDCYFEEEDGLVLLDYKTDYVND--- 1235 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 +RY++Q + Y AL+R + D +YLF Sbjct: 1236 --------IEEIKNRYEIQIKYYEEALNRITGKNVKDK--------YLYLF 1270 >UniRef50_Q4L4Y3 ATP-dependent helicase/nuclease subunit A n=65 Tax=cellular organisms RepID=ADDA_STAHJ Length = 1225 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 212/1255 (16%), Positives = 441/1255 (35%), Gaps = 202/1255 (16%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + ++ ++ + V++LLVVTFT + E++ R+ Sbjct: 28 VLVAAAAGSGKTAVLVERIIQKIIRD--------EIDVDKLLVVTFTNLSAREMKHRVDQ 79 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 I + I R + L ++ +A + T+H FC +++ Sbjct: 80 RIQQASIEDPRN---------------------EHLKNQRIKIHQAQISTLHSFCLKIIQ 118 Query: 139 LNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGP-QALLR 195 + + + I D LL Q+ + +H E +V + R Sbjct: 119 QHYDVIDLDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIEFLTLVEQLSSDRNDDNFR 178 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQ------------------IVARIDTVKQQWR 237 D+ + + +P ++L + I A T+ + Sbjct: 179 DLLKRFYNFSIANPSPFEWLDSLVEIYTDDNKHKLYLDELERLSKIYIKAAYHTLLEAEN 238 Query: 238 DAVGELDALIESSGIDRRKFNRS---------------NQAKWIDKISAWAEEETNSYQL 282 + + ++A I KF ++ + I+ ++ + Sbjct: 239 NFLNCIEAEKHLDVIKLEKFKCEKMIEGNVINFEEIINYTSEKLPTITKKLKDTNEDEGI 298 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE--PLSIRDLVITRALAEIRETVA 340 ++ F +D K E L + + L + L+ R + + + +I A Sbjct: 299 SSQFLTNAKDFFDDYKKLLSEVKNKYLMRSYEDLKVDMKRLAPRIQYLVQIVKDIINGFA 358 Query: 341 REKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 +KR R L F D L + G +A R++F ++DE+QDT+ Q I Sbjct: 359 EKKRSRNVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIIS 418 Query: 399 RIWHHQP-ETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTLDTNWRSA 450 +I L ++GD KQ+IY FR AD +M L N+RS Sbjct: 419 KIKRGDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGLRIDLSKNFRSR 478 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP-AMKMWLMEGESC 509 ++ + N LF D E+ I + + + ++ P + + + S Sbjct: 479 KEVLATTNYLFDHMMD----EEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSD 534 Query: 510 GVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRD 569 + A+ A Q++ ++ + M + R DI +L R + A ++ Sbjct: 535 NDLEKSEQEARYIAEQVKYIIE---HKQVYDMKSETYRQATFKDIVILERGLKNARNLQQ 591 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 IP ++++++ FE E + +L L+ V P ++ L + + + ++ Sbjct: 592 VFKDYNIPF-HVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLVGLMRSVIYQFTEDELA 650 Query: 630 TLN-----------------NDEHAWDVVVEEFDG-------YRQIWRKRGVMPMLRALM 665 + D+ A ++VE+ + Y++ + V ++ Sbjct: 651 NIRVQSMNDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQEYSQSHPVYQLIDKFY 710 Query: 666 SARNIAENLLATAGGERRLTDILHIS-ELLQEAGTQLESEHALVRWLSQHILEPDSNASS 724 + + + GG+ R ++ + + ++ + + +R++ + I + Sbjct: 711 NDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIER--NKDFG 768 Query: 725 QQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY-------------HDR 771 ++ + + ++V+++T+H SKGLE+P V ++ + + Sbjct: 769 EENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPLILNQKYGLGIDYFD 828 Query: 772 HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831 ++ + E E ++E++RL+YVALTR+ L +K Sbjct: 829 LEQNVTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLILIGTIDKEEALEKLERL 888 Query: 832 DVHQS--ALGRLLQKGEP-----------QDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 + + AL + L P Q + L D++ T D + Sbjct: 889 PISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYRFEKSIDNLDESLRPTVDIKIA 948 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTS----------------YSGLQ---QRGHGIAQD 919 Q ++S + ++ R D S Y L+ + + Sbjct: 949 QFEELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFKYPYLKDTEKPSKQSVSE 1008 Query: 920 LMPRLDVDAAGVA-----------SVVEEPTLTPHQFPRGA-SPGTFLHSLFEDLDF--- 964 L +L+ + +G + S E P R A GT +H++ + L F Sbjct: 1009 LKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGTLMHTVMQHLPFKET 1068 Query: 965 --TQPVDPNWVREKLELGGFESQWEPVLT-EWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 T+ +++ E +E E + + E + +++ L T A E+ Sbjct: 1069 RMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYMTITQ-----ADKVYREL 1123 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 F + + + D + +++G IDL+F + +YY +DY Sbjct: 1124 PFVVNQARVDEMPESDEDVS-------------------IIQGMIDLIFLKDDQYYFVDY 1164 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 K++ + ++ +Y +Q + Y L L ++ Y Y FG Sbjct: 1165 KTDAFNKRRGMTDEEVGIQ--LRDKYKIQMKYYKNTLETILNSKVYGYLYFFQFG 1217 >UniRef50_UPI00019738F0 recombination helicase AddA n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019738F0 Length = 1273 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 213/1308 (16%), Positives = 414/1308 (31%), Gaps = 247/1308 (18%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + +R++ RP +E LLV+TFT+AA +E+R R Sbjct: 17 DRNLLVSAAAGSGKTAVLVERIIRMITDG------ERPGDIERLLVMTFTKAAASEMRER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I I ++ ++P E L + A + TI FC Sbjct: 71 IHDAI-------EKKLKEDPGNEH--------------LQQQAIMVQYAQITTIDSFCLH 109 Query: 136 MLNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 +L + + ++ ++ +L + + V G Sbjct: 110 ILREHFDCLDIDPAFRVGDEGEMLLLRGDVMEELLEDWYGRHDPAFENFVETYASGKAD- 168 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQI----VARIDT-------VKQQWRDAVGE 242 I+ Y+ ++ P E + ++ V +D ++ R A Sbjct: 169 -GGIDDYIYQVYSFSQSNPWPKEWIDECRRELSDTSVEALDRTGWMQFLLEDVRRQASEW 227 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEET-----NSYQLPESLEKFSQ------ 291 L E++ + + I + AE+ +S+ S +F + Sbjct: 228 AGQLQEAARLCSEEDGPGAYLPMILSDLSNAEKLREVSGYDSFVQAASGFEFPKLAAVRG 287 Query: 292 -------------RFLEDRTKAGGETPR-HPLFEAIDQLLAEPL--SIRDLVITRALAEI 335 R K E + LF + +++LA+ S L++ + Sbjct: 288 KHSPVNPDKKEKVSECRKRIKKAVEKMKGQFLFASEEEILADLAGSSEAVLMLLTLAEDF 347 Query: 336 RETVAREKRRRGELGFDDMLSRLDSAL-------RSESGEVLAAAIRTRFPVAMIDEFQD 388 +KR R + F+D+ L A + +F ++DE+QD Sbjct: 348 AGRFEAKKRERNLVDFNDLEHLALQVLYQEEKEGGEHRPGEAADLLAGQFDEILVDEYQD 407 Query: 389 TDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HY 441 ++ Q + R + + T + ++GD KQ+IY FR A +++ Sbjct: 408 SNLVQEALIRAVSRERFGTPNVFMVGDVKQSIYKFRLARPELFLEKYHSYTKEDSLYQKI 467 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDA-----------FMFREIPFIPVKSAGKNQALRFV 490 L N+RS ++ S N +F + + F P+ + Sbjct: 468 ELHQNFRSRRQVLESTNDVFYRIMTENLGSISYTEETALHPGASFEPLPQERGRKEAELS 527 Query: 491 FKGETQPAMK--------------------------MWLMEGESCGVGDYQSTMAQVCAA 524 Q A + + + Q A++ Sbjct: 528 GSAAGQTAGEAGEDGPLEEQRDPFSTEILLINTKDSVLEELDDDISDYTRQELEARMIGK 587 Query: 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSN 583 +IR+ + R DI +L+RS A+ + L IP+ + + Sbjct: 588 RIRELTDPERGCPVWDKELGRYRKAEYRDIVILLRSVSGWAESFVETLAHQGIPA-FAES 646 Query: 584 RDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN----------- 632 + F T+E + ML L + P ++ L + L GL ++ + Sbjct: 647 KTGYFTTIEVETMLNFLAVLDNPMQDIPLTAVLKAPFFGLTDRELAEIAARFKHSANRGQ 706 Query: 633 -----------------------------NDEHAWDVVVEEF---DGYRQIWRKRGVMPM 660 + + + F + R+ + + Sbjct: 707 DRGMYGAICLYLGESDQAGETMQSSAEGEREPEILEKLASFFRVTEQLRREAVYLPIHEL 766 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPD 719 + + + + A GE R ++ + E T ++++ + L+ Sbjct: 767 IYRIFDVTGYYDYVSAMPAGETRRANLDMLVEKAAAYEATSYRGVFHFIKYIEK--LKKY 824 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF--YHDRHSFEAV 777 + + + V+I++IHKSKGLE+P+V++ + ++ F Sbjct: 825 NTDFGEASTAAEGGNTVRIMSIHKSKGLEFPIVFVAAMGKQFNRQDTRGKILIDSRFGIG 884 Query: 778 LDLNAAPESVD-----------LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGD 826 D A + + E + E+LR+LYVA+TR+ L + Sbjct: 885 TDYLNAETRLKAPTLKKNVLKRRMDLENMGEELRVLYVAMTRAKEKLILTASDRNLEAKL 944 Query: 827 KKGDT--------------DVHQSALGRLLQKGEPQDAAGLRTCIEA--LCDDDIAWQTA 870 +K + S L +L E + A L ++I Q Sbjct: 945 EKWKELLDTGERGLAFTLLSLAGSYLDWVLMAMEGGVCRIWMREVMAKELLSEEIGEQVR 1004 Query: 871 Q--TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRV----TSYS-------GLQQRGHGIA 917 + T D W + E A + + GD S+S L+ Sbjct: 1005 RKVTKDMLLWPDREEEGEESPASQIFGMLGDEEYRKRLEESFSFQYPWEDELRLNTKMSV 1064 Query: 918 QDLMPRLDVDAAGVASVVEEPTLTPHQFPR---GASPGTFLHSLFEDLDFTQPVDPNWVR 974 D+ D + ++ + + GA GT H E L F + + ++ Sbjct: 1065 SDIKKEGDEELFEESAFLPTIPSFLSGEEKEVQGARRGTAYHRAMELLSFHEIRKKSDIK 1124 Query: 975 EKLELGGFESQWEPVLTEWITAVLQAPL--NETGVSLSQLSARNKQ-VEMEFYLPISEPL 1031 E+L+ E + E + + P ++ G ++ + E +F + I Sbjct: 1125 EQLDRLVEEGKMTADSRELVRESVIWPFFSSDLGKRMAAAQREGRLKKESQFVIGIPARE 1184 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 + +++G ID F +G L+DYK++++ Sbjct: 1185 MGD-------------------FNSDELVLVQGIIDAFFEEDGELVLVDYKTDYVE---- 1221 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY-DYEHHFGGV 1138 RY +Q Y AL + + R+ + Y G V Sbjct: 1222 -------KEETLRERYGIQLDYYRRALMQMEKKRVKETVIYSFRLGEV 1262 >UniRef50_C6JEU5 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEU5_9FIRM Length = 1269 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 221/1315 (16%), Positives = 413/1315 (31%), Gaps = 258/1315 (19%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + L + P+ ++ LL++TFT AA E++ R Sbjct: 17 DRNILVSAAAGSGKTAVLVERILSKITDK------EHPVDIDRLLIMTFTRAAAGEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I + L E+ D+ + L + A + TI GFC Sbjct: 71 ISAAIEKA----------------LCEDPDN-----EHLQRQTTLLHTAQITTIDGFCAY 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVV--FETWKGPQ 191 ++ G+ + ++ L LR + + + V F T K + Sbjct: 110 IIRNYFHLIGLDPGYRTADEGELKLLRGDVVKALLEEYYAKKDEKFQKFVECFATGKSDE 169 Query: 192 ALLRDINRY----LQGEAPVIKAPPPDDETLASRHAQIVA------RIDTVKQQWRDAVG 241 L I + + P D+ ++ D VK + ++A Sbjct: 170 NLGNLIQKLYEMAMSNPFPQEWLSGCMDDYRIDSLEELRETEWMRMLWDAVKDELQEANL 229 Query: 242 ELDA-----------------------LIESSGIDRRKFNRSNQAKWIDKISAWAEEETN 278 + LI S K + + A+ + K S +A T Sbjct: 230 LVQEARRICSEPDGPYLYDEALSSDLLLIRSLQELAEKRDYNGTAEILMKPS-FARLSTK 288 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD---LVITRALAEI 335 + +K + L D K + F++ ++ L E + ++ Sbjct: 289 KAADVDEQKKQRVKDLRDEEKGILKELGQRYFQSAEKELLEVIRYIRGPVEMLVELTVGF 348 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSESGEVL-----AAAIRTRFPVAMIDEFQDTD 390 +E KR + L F DM L ++ GE + A + ++ ++DE+QD++ Sbjct: 349 KERFGEAKREKNILDFTDMEHFALQILMTKEGEEIHMSQAARELSAKYDEVLVDEYQDSN 408 Query: 391 PQQYRIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTL 443 Q + + + + ++GD KQ+IY FR A +M+ L Sbjct: 409 LVQELLTTAVSGWINQKKNIFMVGDVKQSIYRFRLARPELFMEKYKSYSTEEAQEQRIDL 468 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS ++ SVN +F Q + + + + + Sbjct: 469 HKNFRSREQVLESVNFIFRQIMGEDLGGITYDKDAALYPGASFPEGESEEFVKTEVLLVE 528 Query: 504 MEGESCGV------------------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD 545 +GE Q A A +I++ + Q + + Sbjct: 529 RDGEELSDVQDYEDAGASGNRREMENQTGQELEALAIAQRIKEIVGKEQ---IVDKEKKE 585 Query: 546 ARPVRASDISVLVRSR-QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 R V DI +L+R+ A R+ L IP VY ++R F E +L L+ Sbjct: 586 YRSVEYGDIVILLRTAYGWAETFREVLASQGIP-VYCTSRTGYFSATEIVTVLNYLKVCD 644 Query: 605 TPERENTLRSALATSMMGLNALDIETLN---NDEHAWDV--------------------- 640 P ++ L L + ++G + ++ L D ++ Sbjct: 645 NPLQDIPLMGVLRSPIVGCTSQELAELRIQYPDGLLYESVSAYAGENEIPEKELDPDKLK 704 Query: 641 ----------------------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 + + R + V ++ ++ + A Sbjct: 705 SELLNSNLRTDEKNSLNIKLKGFLSLLEKVRNMATYTPVHELILYVLKETGYGDYARALP 764 Query: 679 GGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 GGE+R ++ + E T VR++ Q L+ + + V+ Sbjct: 765 GGEQRFANLTMLVEKAMDYEKTSYRGLFNFVRYIEQ--LQAYQVDYGEVNLTGAGNTAVE 822 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEA---------VLDLNAAP 784 I+TIHKSKGLE+P+V++ + H A + Sbjct: 823 IMTIHKSKGLEFPVVFVAGMGKQFNFQDMNAGLLLHPELGIGADAIIPEKRVIASSLNKQ 882 Query: 785 ESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR---GDKKGDTDVHQSALGRL 841 E L E+LR+LYVA+TR+ L + + + + Sbjct: 883 VIRRQLLKESLGEELRVLYVAMTRAKEKLILTGTVGKLEKQMMSLSRFLDEEEELLPLGT 942 Query: 842 LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP----------------WQVNDVST 885 K + A L + ++ W+ QP Q+ + + Sbjct: 943 RMKAKNYWAFVLPALVRHRAMSELLWEYGILMKKQPGIYDDISEFVIKKITVRQMTEKAV 1002 Query: 886 AELNAKTLQRLPGDNW---------------RVTSY----------------SGLQQRGH 914 +Q NW + S+ S L++R Sbjct: 1003 LIQAGNQMQEEYLKNWDENKVYDEVVKEEIEKRFSFVYPYKYLEDIPVKVSVSDLKKRSW 1062 Query: 915 GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP----RGASPGTFLHSLFEDLDFTQPVDP 970 +L + V A E P +GA+ GT H + E LD+ + Sbjct: 1063 HDESELEENISVSAEEQDEEQEAPVPAFMAEKQEEYKGAARGTAYHRVMECLDYAEADTE 1122 Query: 971 NWVREKLELGGFESQWEPVLTE--WITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPI 1027 +R +L+ + E I + + + G + + + + E F + Sbjct: 1123 EQLRAQLKRLLESQKMTEQEAECIRIRDIRRFVESGLGQRMKKAAMKKHLYREQPFVIQR 1182 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 + ++ + +++G ID F E L+DYK++ + Sbjct: 1183 NASMLDD-------------------GWKNETVLVQGIIDAYFMEEEEIVLVDYKTDRVR 1223 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 + Y +Q + Y AL R R+ + +IY F Sbjct: 1224 RG---------QEQKLINLYHVQLEDYARALERMTGKRVKEK--------IIYSF 1261 >UniRef50_C6LH77 ATP-dependent nuclease subunit A n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH77_9FIRM Length = 1237 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 223/1262 (17%), Positives = 404/1262 (32%), Gaps = 202/1262 (16%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + L +L P ++ LL+VTFT AA E++ RIR Sbjct: 20 LLVSAAAGSGKTAVLVERILSMLTDK------EHPRDIDRLLIVTFTNAAAGEMKDRIRV 73 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 I + C + + + + L + A + TIH FCQ ++ Sbjct: 74 AIEQKIEDCRADGGEE-------------ERLLEHLQRQVSLLSNAQITTIHSFCQYVIR 120 Query: 139 LNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLPREIAQVVFETW--KGPQALLR 195 + + + ++ E L D Y E + + E A L Sbjct: 121 NHFHTIDLDPGLHVADEGEQKLLQSDVMDKLVEEAYAENTEEFRYMAECLAPGRDDAALA 180 Query: 196 DINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT------VKQQWRDAVGELDALIES 249 + L + P + + D ++Q + E+ A IE Sbjct: 181 ETALSLYHFSRSFPFPEEWLQECRDAYDLSAEEFDETAWVRQLQQLSTQILEEVRAQIEE 240 Query: 250 SGI------------DRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDR 297 + D + + + + + L + + Sbjct: 241 ALAIAESPDGPYPYCDALEADLQLADALLAEKTYTGRCAAMQQISWTRLSAKKDASVSEE 300 Query: 298 TKAGGETPRHPLFEAIDQLLAEPLSIRDLV--------------ITRALAEIRETVAREK 343 K + R +A++ L E S IT ++ A EK Sbjct: 301 KKQQVKNLRESYKKAVEDLRTEFYSSPAETAAAAMRDCAPVVAGITEFVSRFAARYAAEK 360 Query: 344 RRRGELGFDDMLSRLDSALRSES-----GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 ++ + FDD+ L + +A + +IDE+QD++ Q I Sbjct: 361 VKKNMMDFDDLEHFALQILVTRRDGKLCPTPVAEEFAAHYEEILIDEYQDSNLVQELILT 420 Query: 399 RIWHHQ-PETALLLIGDPKQAIYAFRGADIFTYMKARSEV--------HAHYTLDTNWRS 449 I L ++GD KQ+IY FR A + + L N+RS Sbjct: 421 SISKKHSGGHNLFMVGDVKQSIYRFRLARPELFTEKYDSYRTGEPQAAQRRIDLHRNFRS 480 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW---LMEG 506 ++ VN LF Q + + + + + E Sbjct: 481 RSQVLTFVNFLFEQIMEKHLGNVEYDDAAALYPGAEFAPGDDDAFRDTEVLLIDAEAEEE 540 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-RQEAA 565 + + A A +I + + R DI +L+R+ + A Sbjct: 541 KEKPEESARELEAYAVAQRIAGIVG---KELVWDNALGAYRRAEYRDIVILLRTIQGWAE 597 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 LT +IP+ + +R F T E Q +L LL+ + P ++ L + L + ++ L+A Sbjct: 598 PFAKVLTEQDIPA-HTGSRTGYFSTTEVQTVLSLLRVIDNPRQDIPLTAVLHSPIVWLSA 656 Query: 626 LDIETLNN------------DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAEN 673 ++ + + E + +R++ + +L + A Sbjct: 657 GELAAIRSAHPQMPFYEACMQEPSLADFFAMLAEFRRMAAYTPIHELLWYIFERTGYAAY 716 Query: 674 LLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 A GG +R ++ + E + + VR++ + + D + Sbjct: 717 AAAMPGGSQRKANLDMLVEKAIAYEQGSYRGLYNFVRYIEN-LHKYDVDFGEAA--SGEQ 773 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF----YHDRHSFE-AVLDLNAAPESV 787 ++ V+I++IHKSKGLE+P+V++ + Q A H D S Sbjct: 774 ENAVRILSIHKSKGLEFPIVFVCGMGKQMNQSDARKSVVLHADLGIGCDRTDPKLRIRSA 833 Query: 788 DLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG---------- 829 L + E L E+LR+LYVALTR+ L +K Sbjct: 834 TLLKRFMKRYTVQENLGEELRVLYVALTRAKEKLILTGTVTKLADKLQKWGQVCRREGTV 893 Query: 830 --------DTDVHQSALGRLL----QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQ- 876 + + LL ++ + L +I + + Sbjct: 894 LPFTLRAHASTYWDWLIPSLLRNRCFAPLAEEYGVYQDHSHPLFSREIFCRVTYLPVREL 953 Query: 877 ----------------------PWQVNDVSTAELNAKTLQ-----RLPGDNWRVTSYSGL 909 P V D A+ A+ L S S L Sbjct: 954 TGAEKQRQKKLYMTREKLLSLSPEAVFDAKAAQQLAENLSFCYAYGGEEKIPAKVSVSEL 1013 Query: 910 QQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD 969 ++ + L + A V + E L GA+ GT H L E LDFT D Sbjct: 1014 KKYAQFDELEDGELLFEEPAPVPLIPE--FLQEKSEVSGAARGTIYHKLMECLDFTLFAD 1071 Query: 970 PNWVRE-------------KLELGGFESQWEPVL--TEWITAVLQAPLNETGVSLSQLSA 1014 + ++ +L+ G E L + + A L+ PL + + Sbjct: 1072 TSVQKDTAEMRRFLEAETGRLQRAGHLKAEEAELISEKKLLAFLKHPLAQRMAQAA--VR 1129 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 E +F L + A + + P +++G ID F +G Sbjct: 1130 GQLFREQQFVLSVP----AGDIRREWQAGGP--------------VLIQGIIDAYFIEDG 1171 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYD-YEH 1133 + L+DYK++++ + ++ +Y +Q Y +AL R +++ Y Sbjct: 1172 QIVLVDYKTDFVKFEEASS---------LYRKYAVQLDYYEIALTRLAHLPVSEKLIYSF 1222 Query: 1134 HF 1135 Sbjct: 1223 CL 1224 >UniRef50_B9EAN8 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EAN8_MACCJ Length = 1148 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 210/1223 (17%), Positives = 416/1223 (34%), Gaps = 162/1223 (13%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M A + + Q + L+ A+AG+GKT + +R ++ + V+ELL Sbjct: 1 MQWTASQQEAIVTTGQ-DTLVAAAAGSGKTAVLVERIIRKIIDQS--------VNVDELL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT A+ E++ RI + + E + L + Sbjct: 52 VVTFTNASAKEMKHRIFNRLQEALNDAPHN---------------------EHLKTQLIK 90 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPRE 178 + +A + T+H FC ++ + + + +E LL QA D + Sbjct: 91 LHQADISTLHRFCLNLIERFYYTIDLDPTFRTASEEERALLLMQAIDDVLETIYEAAHPD 150 Query: 179 IAQVVFETWKGP-QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 ++ +R L A P E +A+ + + + Sbjct: 151 DMTLLLHLSSDRKDDYVRKTLVKLYNFAIANSHPSRWLEAIAASYRDVSTDSSYFLSINQ 210 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQR---FL 294 EL ++ ++ + E+ + E F Q Sbjct: 211 QINDELHQAVQLIKRAEDLCISPALDTNLEYLQKIREQLEQFPESLEEKFSFIQSIQFGR 270 Query: 295 EDRTKAGGETPRHPLFEAIDQLLAE-------------------------PLSIRDLVIT 329 + K + L E I + L + +S+ +T Sbjct: 271 KPNMKKSDDPYDKELNEGIKEYLTQSKKLVSNIQENYLYAPIEELADDIRAMSVEVERLT 330 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQD 388 R + + ++ KR R + F D L ++ +A ++ ++ ++DE+QD Sbjct: 331 RMTQMVIDRFSQLKRERKLIDFSDYEHFALQILIHNDEPTEIAHMLKAQYKEILVDEYQD 390 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTL 443 T+ Q I + I + ++GD KQ+IY FR A+ +M+ S L Sbjct: 391 TNRVQESIIQAIKRDD---NMFMVGDVKQSIYKFRQAEPELFMEKYSHFKSGGPGKVIDL 447 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS ++N+ N++FS+ D + I + ++ L Sbjct: 448 SQNFRSRRAVINNTNEIFSKIMDEKLGDIIYDDDQMLYYGAPY------DDMSQHTELHL 501 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 + E +Y ++ A I + + + + R + DI++L R Sbjct: 502 LNKEELNDIEYFAS--HHIADVIEQIIAQEE---VYDVKTGEYRAAQYKDIAILERGFSS 556 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 AA+ + +IP ++++++ F+T E +L LL+ V P ++ L L + + Sbjct: 557 AAEHMKVMKDRKIPF-HVNSKEGYFQTDEINTILSLLRVVDNPLQDIPLAGLLRSIIYQF 615 Query: 624 NALDIETLNNDEHAW---------------------DVVVEEFDGYRQIWRKRGVMPMLR 662 +A ++ L +D + V+ + YR+ RK V ++ Sbjct: 616 DAHELTALRSDCSVFLYHNLLSYSVNGEDAQLKYKVKKVLADISDYREQSRKVSVKDLID 675 Query: 663 ALMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEHALVRWLSQHILEPDSN 721 + + + E GG +R ++ + + ++ + + +R++ + Sbjct: 676 YIYNDTLLIEKFTLLPGGHQRQANLEGLLQKAEQFEQSSYRGIYQFLRFVDNILEA--GK 733 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEAV 777 + + + ++V+++T+H SKGLE+P V I +EQ + R Sbjct: 734 DFGEMNIVSDEANVVRMMTVHASKGLEFPFVIYNNIDRQFNLMETKEQLLLNQRLGLSIT 793 Query: 778 LDLNAAPES---------VDLAEAERLAEDLRLLYVALTRSVWHCSL--------GVAPL 820 A + E+++E+LRL+YVALTR+ L + Sbjct: 794 FYDKMAHTTYPLAINQLFKTKIRNEQVSEELRLMYVALTRAREKLVLVGNVKDDKVIEKF 853 Query: 821 VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 880 DKK D SAL L + + + +T ++ + Sbjct: 854 QNVDVDKKMDDYYRLSALSPLQFIAPIALHDDSIDVRMIRTLNTLENKATETAESTKAEG 913 Query: 881 NDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTL 940 + + S S +++ + + + P Sbjct: 914 VTWLQELKDYRYPYLSENLLPTKESVSEIKKAQETDDEATAWTYINQYRLGKATYDRPKF 973 Query: 941 TPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE----LGGFESQWEPVLTEW-IT 995 + A GT +H + + L VD ++ L+ + P++ E I Sbjct: 974 MSEEKKTAAEYGTLMHKVMQHLPRLNNVDSEDIKHFLDDLVNRRIISDEERPLINEKHIY 1033 Query: 996 AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEF 1055 + L + + A E+ F + G + Sbjct: 1034 QFTKTVLYD-----RLVHADEVYFELPFVI-----------------------GKQYITQ 1065 Query: 1056 MQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYT 1115 +++G ID VF++EG YY +DYK++ + T++ +A RY++Q Y Sbjct: 1066 SHPDQLVQGMIDCVFKYEGHYYFIDYKTDQVISRLGRTTEETLAE--LKLRYEVQMNYYK 1123 Query: 1116 LALHRYLRHRIADYDYEHHFGGV 1138 L L + Y Y G V Sbjct: 1124 KTLEVILDEPVTGYLYFFEAGTV 1146 >UniRef50_C8NA25 UvrD/REP helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA25_9GAMM Length = 1287 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 294/1322 (22%), Positives = 478/1322 (36%), Gaps = 188/1322 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ E L +PL+G LIEASAGTGKT+T+ + LRLL+ E++ Sbjct: 1 MNTTTEPTPALEIPLEGRALIEASAGTGKTWTLTGIILRLLIEG--------GYPPREII 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQ-------- 112 TFT A AE++ R+ +H LR E +L + D A Sbjct: 53 ATTFTRKAAAEMQQRVHKRLHALRENLKAIAARYLAEETVLNDDDGLATRLDDIIGGSGG 112 Query: 113 -------------------------WLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGML 147 + + ++DE + TI CQR L A E+G Sbjct: 113 DLINRHLILNAVAKHGLDGLIAIFSRVESLQARLDELFIGTIDSLCQRWLAEFALETGND 172 Query: 148 FEQQLIEDESLL---RYQACADFWRRHCYPLPREIAQVVFE-TWKGPQALLRDINRYLQG 203 Q+ E+ L + + P AQ++ + + A L Sbjct: 173 ERLQINENSPALEETIHDTLRRLLHENHQHDPETFAQMLADGAYHDSDAYLAAAREATSH 232 Query: 204 EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQA 263 I + + RH + ++ + + + A+I++ + Sbjct: 233 RHAAIDSGDVSADYSRDRHQALTRQLRELDAAV---IADWQAMIDAPEFAAAVAKNAAWY 289 Query: 264 KWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETP-----RHPLFEAIDQLLA 318 K D + ++ + E + F + R + HP I LLA Sbjct: 290 KQRDALPQLLQQLHQELPFNDRTEALASGFGKPRISSKQTALTAAFTAHPFTLLIRDLLA 349 Query: 319 EPLSIRDLV-------ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVL 370 + ++ + I L +R+T + RGE F + +R++ AL G L Sbjct: 350 ARDARQNHLDHHKRQTIASLLETVRQTYPQALEARGETTFSEKTARINEALAHPQHGTNL 409 Query: 371 AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW----HHQPETALLLIGDPKQAIYAFRGAD 426 A + R+PV ++DE QD + +Q + R + + LLL+GDPKQAIY FRG D Sbjct: 410 AHYLTRRYPVMLVDESQDLNDEQAALLERTYLREDGERKHGFLLLVGDPKQAIYGFRGGD 469 Query: 427 IFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 484 + Y + ++ + LDTN RS+P ++ ++N+ + Q D+A + +I + ++A Sbjct: 470 VANYNRLKTRFRPDEQHRLDTNRRSSPNLIAALNEHYLQDDNARLGTDITYHEAQAANPA 529 Query: 485 QALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD 544 Q + G W G + Q + AA + Sbjct: 530 QTI-LAADGSPIARPMQWTHSGTN------QDSETDTIAALVARL--------------T 568 Query: 545 DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVM 604 D + DI +L+RS +++ L I S +R SVF A+ LL A+ Sbjct: 569 DGTGIAPRDIQILMRSNSSLETLQNKLHAQHIDSERSHDR-SVFTGAVARTFADLLAALE 627 Query: 605 TPERENTLRSALATSMMGLNALDIETL----------NNDEHAWDVVVEEFDGYRQIWRK 654 PE + L+ G + D++ L DE + E W+ Sbjct: 628 QPEHRDRQNRLLSGLYYGYSQQDLDRLAAIEQGEIPARADELTLAELREALTQAHDAWQS 687 Query: 655 RGVMPMLRALM--SARNIAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRW 710 G++ L L+ NI + L + R L D+ HI +L E + W Sbjct: 688 WGLLAALNPLLTHEKHNIWQTLASCPAPDNLRHLLDLRHIQTILAEHAPKQR-PAQFGAW 746 Query: 711 LSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP-FITNFRVQEQAFYH 769 + P ++ L ++ V ++TIHK+KGLE P+V L + Sbjct: 747 WRAQLAAPPDADWAKAPPLP-GQNAVHLLTIHKAKGLEAPVVILATGSNHKGGGANPVPT 805 Query: 770 DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV------------------- 810 R+ + ++ A + + + E RLLYV LTR+ Sbjct: 806 WRYRDGDTIRISLAKPANTPIDQQENEEQRRLLYVGLTRAKNLLLVAHRECKPDKANPTP 865 Query: 811 -WHCSLGVAPLVRRRGDKKGDTDVHQSALGR----------------------------- 840 L A R + +AL Sbjct: 866 TEKLYLTYAQNPGRCPHAGETSAEALAALPYRAHPSHEPPANPPPPQSGGGEGGNGGSAC 925 Query: 841 -----------------LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDV 883 + GE +AG + D A P Sbjct: 926 DFTAYAHEKPLSLWERGWGEGGEKAASAGRISAQRVTQQPDDHQTAATEPPTNPPPQQSG 985 Query: 884 STAELNAKTLQ------RLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 + + R W+ +S+S L + + V A Sbjct: 986 GGQGRGCENPRSTAPVWRTRFQGWQRSSFSALLRDAIEPTSPDLADYAVATPQNAPDAPP 1045 Query: 938 PTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE------LGGFESQWEPVLT 991 + +PRG +PG+ LH++ E + +P + R LE G E Sbjct: 1046 DADIRYTYPRGTAPGSALHAVLERI---RPDNRRDWRRYLEHDNRQWQLGLEPAQLDACE 1102 Query: 992 EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP 1051 W+ A+ L ++ +SL + E F L S+ +A + + F Sbjct: 1103 NWLEAIQYCELPQSRISLGTSKQGAHRSEYGFTLG-SDARVALDIPAINAHFAAHGHPLH 1161 Query: 1052 PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQY 1111 + + L+G ID +++H+GRYY+LDYK+N LG + YT + + AAM H Y LQ Sbjct: 1162 LSDKHRHIRYLRGEIDHLYQHDGRYYILDYKTNHLGNSPADYTPENIRAAMGDHHYWLQA 1221 Query: 1112 QLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEM 1171 LY +ALHR L+ R+ADYD H GG+ YL+LRG+D HP G Y IA +D + Sbjct: 1222 ALYQVALHRLLQTRLADYDPARHLGGIEYLYLRGIDPAHPANGKYGWNYPPEFIAGLDRI 1281 Query: 1172 FA 1173 Sbjct: 1282 LG 1283 >UniRef50_Q836J8 ATP-dependent helicase/nuclease subunit A n=35 Tax=Bacteria RepID=ADDA_ENTFA Length = 1264 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 212/1287 (16%), Positives = 434/1287 (33%), Gaps = 218/1287 (16%) Query: 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 L+ ASAG+GKT + + + + ++ LL+VT+TEAA E+ Sbjct: 23 FDGDENILVSASAGSGKTTVLVRRVIEKV---------KSGVDIDRLLIVTYTEAAAREM 73 Query: 73 RGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGF 132 + RI+ + + + + + A + T+H F Sbjct: 74 KERIQVALQKAMNEEQD------------------PERRRHFSRQIALLPTANISTLHAF 115 Query: 133 CQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGP 190 C ++ + + +++ DE+ L + D R Y +E + + Sbjct: 116 CLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEAFYQLTANFSND 175 Query: 191 --QALLRDINRYLQGEAPVIKAPPPDDETLASRHA--------------QIVARIDTVKQ 234 L ++ A P L + ++T+++ Sbjct: 176 RSDDGLTNLIFSFYEFAKANPDPEAWINGLTQAYEVGDQLGESKLFQTYLKPLAVETLQR 235 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE--EETNSYQLPESLEKFS-- 290 + + + + + N+ + + + E + ++Y L E L Sbjct: 236 TLQRYEEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESAYNLTELLSFDRYP 295 Query: 291 -------------QRFLEDRTKAGGETPRHPLF----EAIDQLLAEPLSIRDLVITRALA 333 + L ++ K + LF +A+ Q+L E I + Sbjct: 296 TVRAEELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEM-AHVGK 354 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAA-----AIRTRFPVAMIDEFQD 388 + E EKR + + F+D+ + L + A R +F ++DE+QD Sbjct: 355 QFMEAYGAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQD 414 Query: 389 TDPQQYRIFRRIWHH-QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-----AHYT 442 + Q I + E L ++GD KQ+IY+FR AD +++ ++ Sbjct: 415 INQLQESILYWLRRPLSTEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKEGKRII 474 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREI---------PFIPVKSAGKNQALRFVFKG 493 L N+RS +++ N +FSQ D + + F A +++ Sbjct: 475 LAENFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEK 534 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 + +++ ++ + D V A +IR+ + Q RP+ D Sbjct: 535 KATESVEFPELQSPELLIEDKTEGELYVTALKIRELID--QNFLIYDKKLKTDRPITYQD 592 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I +L +++ + D LEIP V +++ + F+ E + M+ LLQ + P ++ L Sbjct: 593 IVLLTPTKKNNLTILDVFKSLEIP-VQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPLA 651 Query: 614 SALATSMMGLNALDIETLN---NDEHAWDVVV-----------------------EEFDG 647 + L + ++GL ++ + + ++ + E + Sbjct: 652 AVLRSPIVGLKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEK 711 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHA 706 +R+ R+ + +L + + + G++R ++ + + T Sbjct: 712 WREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQ 771 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA 766 VR++ + + + + + S+++ V+++TIH SKGLE+P+V++ +T Sbjct: 772 FVRFIEKM---QEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDL 828 Query: 767 -------------FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 + + + D + + L+E++R LYVALTR+ Sbjct: 829 NERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKL 888 Query: 814 SLGVAPLVRRRGDKKG------------------DTDVHQSALGRLLQKGEPQDAAGLRT 855 L + + K+ + +G L + + D Sbjct: 889 FLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEV 948 Query: 856 ---------------CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR----- 895 I+ ++ + Q + + A+L+A + R Sbjct: 949 VVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARL 1008 Query: 896 ----LPGDNWRVTSY---SGLQQRGHGIAQDLMPRLDVDAAGVASVVE-------EPTLT 941 R TSY S +++ + +++V E L+ Sbjct: 1009 SFNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLS 1068 Query: 942 PHQF------PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW-- 993 +F P A GT H L + +D ++ VR E P + E Sbjct: 1069 KPKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMN 1128 Query: 994 ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPL 1053 + ++ G L Q + + E F + I + Sbjct: 1129 LEQIVAFFDTALGKQLIQ-HHQTVRREQPFSMLIEAEELIQNYP---------------- 1171 Query: 1054 EFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 E Q ++ G ID + + L DYK++ + + QA++ + RY Q L Sbjct: 1172 ETTQDDLLIHGIIDGYIELDNQCILYDYKTDHVKGT----SPQAISEIV--ERYRGQMNL 1225 Query: 1114 YTLALHRYLRHRIAD-YDYEHHFGGVI 1139 Y AL ++ Y + GGVI Sbjct: 1226 YRRALQEATHKEVSHVYLILLN-GGVI 1251 >UniRef50_C4Z484 DNA helicase II / ATP-dependent DNA helicase PcrA n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z484_EUBE2 Length = 1220 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 211/1269 (16%), Positives = 409/1269 (32%), Gaps = 221/1269 (17%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + ++ + + ++ L+VVTFT+AA A+++ + Sbjct: 19 DCNVLVSAAAGSGKTAVLVERIISMITD------PDKNIDIDRLVVVTFTKAAAAQMKDK 72 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR + + + LL ++ A + TI FC Sbjct: 73 IRKALDSMLDENPGDVN---------------------LLRQITLLNNAQITTIDSFCLW 111 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ + E + +++++ L+ D E +V G Sbjct: 112 IIRNHFPEVNLDPGFRIMDEGEKKLIENDVLEDVLEEFYAEADEEFFNLVDAFGMGRDD- 170 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHA----------QIVARIDTVKQQWRDAVGEL 243 + + ++ P DE I D++K D + Sbjct: 171 -SGLVSIIDKIYRFSRSNPWIDEWFDECMLVYDDETYDNPAIKELYDSIKNALLDYRDKY 229 Query: 244 DALI----ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL----PESLEKFSQRFLE 295 + L+ E +G + I+++ + ++ E+L + + Sbjct: 230 NRLVDICSEPAGPAAYTGALQSDLLGINEMINSQDFGELGRRIRIFSFEALSRKKDAGAD 289 Query: 296 DRTKAGGETPRHPLFEAIDQLLA--------------EPLSIRDLVITRALAEIRETVAR 341 K + R + I +L + I+ + + + V+ Sbjct: 290 PDIKEYVKGQRKLFKDYIGRLNDKIFLKDDEGIFADMQGAGIQIRTLLKVAKVYAKRVSE 349 Query: 342 EKRRRGELGFDDMLSRLDSALRSESGEVL-----AAAIRTRFPVAMIDEFQDTDPQQYRI 396 KR +G + F+DM S L + L A + RF +IDE+QD++ Q I Sbjct: 350 VKREKGIIDFNDMEHLALSILVKKEDGKLVYTETADKLANRFEEILIDEYQDSNQLQEVI 409 Query: 397 FRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-----HYTLDTNWR 448 + + ++GD KQ+IY FR A +++ L N+R Sbjct: 410 LNAVSKTRLSGENNNIYMVGDVKQSIYKFRLACPELFIEKYDTYGETGDNVRIELQKNFR 469 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK---GETQPAMKMWLME 505 S ++ N +FS + V+ + E + + L+ Sbjct: 470 SRENVLECANDVFSHIMNKNFSGIGYDESVRLNAGFPYPEYSDSNYGDEANKSTDVILIS 529 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ-EA 564 E+ + A A I + +G + + RP DI +L RS A Sbjct: 530 SENEEEATTRELEADRLAKLIEGIVSSGV--NVYDADENIYRPAEYRDIVILTRSVTGWA 587 Query: 565 AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN 624 DAL IP+ Y + F E Q +L +L V P +E +L +A+ + G Sbjct: 588 DTFADALMDRGIPA-YTDSSTGYFSVREIQVILSMLTIVDNPVQEISLAAAMMSYFGGFT 646 Query: 625 ALDI----------ETLNNDEHAWDVV---------------------------VEEFDG 647 A ++ N + ++ + + + Sbjct: 647 AAELGMVRKLGREHADKNTHNNLYEHLKAVAVLGGAGKMQESDVKQLSGKCALFLAKLTE 706 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEHA 706 YR + + ++ + + G +R ++ + E G + Sbjct: 707 YRDKSSVESLYDLCWEMIYDSGYYDYVGTMPAGAQRQANLNVLLERAAGYGKSSYSGLFN 766 Query: 707 LVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF--RVQE 764 +R++ + + + D + + L+ +++LV+I++IHKSKGLE+P+V L + Sbjct: 767 FLRYIER-LKKFDEDFAEGAASLD-NENLVRIMSIHKSKGLEFPIVILAGAHKSINFMDA 824 Query: 765 QAFYHDRHSFEAVLDLNAAPES-----------VDLAEAERLAEDLRLLYVALTRSVWHC 813 A + +D E +AE+ RLLYVA+TR+ Sbjct: 825 TAPVLVDQNLGIAVDYVDLERRTKTPTIIKGAMARRIVRESIAEEERLLYVAMTRAREKL 884 Query: 814 SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA-----WQ 868 + + K Q A +L + ++ I +C D ++ Sbjct: 885 IITGVVKDADKTLDKYMGRAEQLAADGMLSFADSENIKNYLDMIMPVCLMDSDKLKGSFK 944 Query: 869 TAQTGDNQPWQVNDVS---TAELNAKTLQRLPGDNWRVTSYSGL------------QQRG 913 W + E NA + L +N SY L +R Sbjct: 945 VMVDAGEDSWVDAFEAGEMAGEANAVRIGELADENMEAVSYPLLDELPEYVPDDNAARRM 1004 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLT-------------PHQFPRGA-------SPGT 953 L D + + ++E T +F G G+ Sbjct: 1005 KLTVSQLKAMQADDDSEENAYMDESVKTALKKEACDETNSIIPKFISGEEVQLAANERGS 1064 Query: 954 FLHSLFEDLDFTQPVDPN----WVREKLELGGFESQWEPVLTEW-ITAVLQAPLNETGVS 1008 H + E LD++ V+ + + LE G + W I +Q+ Sbjct: 1065 AYHRVMECLDYSVSVNLDGVKADINRMLETGKMNELQVKSVNPWDINTFVQSDTGRRVA- 1123 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 + ++ + + E F +++G IDL Sbjct: 1124 -NAVNCGSVRREQPFVFEYEGQ------------------------------LIQGIIDL 1152 Query: 1069 VFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 F +G + L+DYK++ + + + RY +Q Y AL + ++ + Sbjct: 1153 YFEEDGEFVLVDYKTDRVMKGEAG-------EKELVRRYAIQLDYYAKALTQLTGKKVKE 1205 Query: 1129 Y-DYEHHFG 1136 Y G Sbjct: 1206 KIIYSFALG 1214 >UniRef50_C6CTT6 Recombination helicase AddA n=2 Tax=Firmicutes RepID=C6CTT6_PAESJ Length = 1277 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 214/1303 (16%), Positives = 400/1303 (30%), Gaps = 244/1303 (18%) Query: 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 L+ A+AG+GKT + +R + V+ LLV TFT+AA AE++ RIR Sbjct: 30 VLVAAAAGSGKTAVLVERIIRKISSFS---------DVDRLLVATFTKAAAAEMKDRIRI 80 Query: 79 NIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLN 138 + E+ ++ ++ L M+ A++ T+H FC ++ Sbjct: 81 AL---------------------EKELERQPESEHLRRQLALMNRASITTLHSFCLDVIR 119 Query: 139 LNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPL--------------------PR 177 G+ ++ + ES L D Y Sbjct: 120 RYYPLIGLDPGFRIANETESELMRIDVLDQLFEEKYEGSSGDSGAFLRLADRYGGERGDE 179 Query: 178 EIAQVVFETWKG------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 + ++V + + P+ LR + P +L + ++ + Sbjct: 180 PLYKLVQQLYDFAQSHPWPEHWLRQTAASFMVDNVEGLRSSPWVASLRADVELALSGAAS 239 Query: 232 VKQQWRD----------AVGELDALIESSGIDRRKFNRSNQAKWIDKISA--WAEEETNS 279 + Q + + G W + A + + + Sbjct: 240 LLNQAMQLTREPAGPAPYAATFEEDLAIVGGLAETVRMHPWEMWFESFQAVQFGKLKAMR 299 Query: 280 YQLPESLEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEPLSIRDL--VITRALAEIR 336 + + + L D+ K + LF + ++ E + L ++ + E Sbjct: 300 GDDYDKTMQEQAKELRDQAKKLISSLADELFGRSAEEFAWELQELAPLMAALSELVIEFG 359 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQDT 389 + KR +G L F D+ LR+ A + +F ++DE+QDT Sbjct: 360 QRYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELTTPSPAATEYQRQFDEILLDEYQDT 419 Query: 390 DPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HYTL 443 + Q I I + ++GD KQ+IY FR A+ +M A L Sbjct: 420 NMVQEAIVSLIANPHAGNR-FMVGDVKQSIYRFRLAEPNLFMSKYKNYGAPGGDGLRIDL 478 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFR--------------------------EIPFIP 477 N+RS +V+ VN +F + E+ I Sbjct: 479 ARNFRSRLEVVDGVNDVFRAIMRETVAEMDYDKRAELVCGASYPEPDLPGRFAVELAVID 538 Query: 478 VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537 + + + + ES A++ A QIR L G Sbjct: 539 KAGSSNEEDGAVSPADSDDESEQGAGPAAESAEELQTAQLEARLIARQIRSLLDEG--FR 596 Query: 538 ALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEM 596 ++RP+ DI +L+R ++ A + + L IP+ Y F+ E + + Sbjct: 597 VYDGKKRESRPMEWRDIVILLRATQAWAPVIIEELQGAGIPA-YAELSSGYFDATEVETI 655 Query: 597 LWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND---------------------- 634 L LL+ + P ++ L L + + GLNA ++ + Sbjct: 656 LSLLRVIDNPYQDIPLAGTLRSPIFGLNAEELALIRIGAMQDTYYDAVLQAAGDLLLPDE 715 Query: 635 -EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 + +E D +R R+ + ++ ++ + GG +R ++ + + Sbjct: 716 LRRKLSLFLERLDRWRNDARQGSLADLIWSIYRETGYYDFAGGLPGGVQRQANLRALHDR 775 Query: 694 L-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 Q T +R++ + L +++V+I++IHKSKGLE+P+V Sbjct: 776 ARQYEATSFRGLFRFLRFVERMRD--SGGDLGTARALGEQENVVRIMSIHKSKGLEFPVV 833 Query: 753 WLPFITNFRVQEQAFY-------------HDRHSFEAVLDLNAAPESVDLAEAERLAEDL 799 ++ + Q+ + E LAE++ Sbjct: 834 FVAGLGKNFNQQDLRSAFLKHKQLGFGPKYIDPEKRVSYPTLPFLSIRRRMRMEMLAEEM 893 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT------------------------DVHQ 835 R+LYVALTR L ++ + + Sbjct: 894 RILYVALTRPKEKMFLVGTVSDAAAKQRRWQSASDAKGYISDFRLSSASTFLDWLGPLAA 953 Query: 836 SALGRLLQKGEPQDAAG-LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894 +A +L + P L + D + A G + + + + Sbjct: 954 AAFNQLPDETVPGHEDSRLLQWRAGVVDAAMLGLEAAIGVEERTEEDQAREDRMQGVLSL 1013 Query: 895 RLPGD-----------NWRV-----------TSYSGLQQRGHGIAQ------DLMPRLDV 926 WR TS + +++ + L P Sbjct: 1014 AQLDQVEQDEELRNRLEWRYGYRASTLVAAKTSVTEMKRLHSEAVEMPEDSAALYPADTF 1073 Query: 927 DAAGVASV------------VEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVR 974 + P A GT H L + L VD + + Sbjct: 1074 SDRQQEDGKKSSGGGSYTFRLRRPRFMEEAALTAAEKGTVSHLLMQHLPLAGDVDVDRLG 1133 Query: 975 EKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 L + I A +T + + A+ + E+ F + Sbjct: 1134 SILSDMVSRKLLTARQADSIDLPAVAAFFDTEIGKRLVHAKWVRREVPFSCMFPAQRVYP 1193 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYT 1094 L + +++G ID +F E LLDYK++ + Y Sbjct: 1194 GLAA---------------DMAGEPVLIQGVIDCLFEDENGIVLLDYKTDRI------YM 1232 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 +Q A R+ Q +LY A+ + IA+ GG Sbjct: 1233 KQW---EQAAERHRFQLELYAEAIESVIGQPIAESHVFFFDGG 1272 >UniRef50_C9LAG5 ATP-dependent nuclease subunit A n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAG5_RUMHA Length = 1223 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 209/1264 (16%), Positives = 409/1264 (32%), Gaps = 207/1264 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + ++ + P+ ++ELL+VTFT AA E++ R Sbjct: 17 NCNILVSAAAGSGKTAVLVERIIQRITDKNN------PVDIDELLIVTFTRAAAGEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR I + A + + L + A + TI FC Sbjct: 71 IRQAIEKKLEANPED---------------------EHLQRQSTLVHHALITTIDSFCSY 109 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKG---- 189 ++ + ++ ++ LL+ G Sbjct: 110 IVKNYFHLIDLDPSFRMGDEGEMRLLQADVADAVLEEAYTEEAPSFLAFSDGFAGGKTDK 169 Query: 190 --PQALLRDINRYLQGEAPVIKA----PPPDDETLASRHAQIVARI--DTVKQQWRDAVG 241 P+ +++ + + P + +TL ++ + VKQ+ ++A Sbjct: 170 KIPEMIIKLYSFSMSYPYPEEWLLNCRKAYEVKTLEELENAEWMKLIKNEVKQEIKEASM 229 Query: 242 ELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAG 301 L +E S + E N ++ E L+K + L KA Sbjct: 230 LLKQALEISKEPDGPVFYIGLLEDEVSELEKLERTENFFEWKEMLDKLEFKRLPAGKKAE 289 Query: 302 GETPRHPLFEAIDQLLAEPLSIRDL-------------------------VITRALAEIR 336 E E L E V+ Sbjct: 290 KELVSESRQELAKNLRNEAKEQIKALKERYFQETAEEMLENLQRAGEPVGVLVDLTLAFM 349 Query: 337 ETVAREKRRRGELGFDDMLSRLDSAL-----RSESGEVLAAAIRTRFPVAMIDEFQDTDP 391 + +K+ + L F D+ L + A + +F MIDE+QD++ Sbjct: 350 KLYREKKKEKNILDFGDLEHYALEILIHHTKEKDERTDAARELSKKFAEIMIDEYQDSNL 409 Query: 392 QQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HYTL 443 Q ++ + + ++GD KQ+IY FR A +M+ L Sbjct: 410 VQEKLLTSVSKIEDGIYNIFMVGDVKQSIYRFRLARPDLFMEKFKTYPQEAGENCLRIDL 469 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS ++ VN LF Q ++ + S R + + + Sbjct: 470 HKNFRSRAEVLEGVNYLFYQIM----GEDLGGVEYDSTAALYPGRTFPPKQEEESEPATE 525 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 + + + A++ A +I + + L ++ RP + SD ++L+R+ Sbjct: 526 VLLLEDEEENTRELEARMVALRIGEL---AGKYLVLDKKTEEYRPAKYSDFTILLRTMSG 582 Query: 564 AAQ-VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 A+ + L IP+ ++ + F E +L L+ + P ++ L +AL G Sbjct: 583 WAETFKKILNSCGIPA-SVTTKTGYFSAQEVTTVLDYLKILDNPMQDIPLAAALHGLPDG 641 Query: 623 LNALDIETL------NNDEHAWDVVV--------------EEFDGYRQIWRKRGV---MP 659 + ++ + N ++ ++ F YR + RK Sbjct: 642 FSFQELAEIKVLGMENEKNGFYEALLLGEKLSSPLGEKIRRFFAVYRDLRRKVPYTPMHE 701 Query: 660 MLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEP 718 ++ A + + GE+R ++L ++E T +R++ L+ Sbjct: 702 LIWDFYDATDFLVYQQSFVSGEQRKANLLMLAEKARDYESTSYRGLFNFIRYIEN--LKK 759 Query: 719 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSF 774 + L ++ V+I++IH SKGLE+P+V++ + +E H Sbjct: 760 YQVDFGEANTLSENEDTVRIMSIHGSKGLEFPIVFVCGMGKQINMQDARESIVLHPDLGI 819 Query: 775 E-AVLDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVA------- 818 +D + + + E L E+LR+LYVALTR+ L Sbjct: 820 GSPYVDTQLRIRTRTILQKAVQREILLESLGEELRILYVALTRAKEKLILTGVTSKLEDT 879 Query: 819 -----------PLVRRRGDKKGDTDVHQSALGRLLQ----KGEPQDAAGLRTCIEALCDD 863 G + L L + K + + + D Sbjct: 880 LKSFEMLKKQEEERLPYGLRVKGKSYLDWVLAALARHRAMKPLYEMYDFSVYSLNEMYDR 939 Query: 864 DIAWQTAQ-------TGDNQPWQVNDVSTAELNAKTLQRLPGDNWR---VTSYS------ 907 + + Q + Q + EL + + WR S+S Sbjct: 940 EPDFTVRQVQPLELVLDEAQLRTEEMLKKGELLLWDSSEVYDEKWRKLFRDSFSYEYPYQ 999 Query: 908 ---GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF-------PRGASPGTFLHS 957 + + M D + + + EE F +GA+ GT H Sbjct: 1000 AEGAIPAKLTVSEIKRMQSADTEESEILLEKEETEEIVPLFMQETKEELKGAAKGTLYHR 1059 Query: 958 LFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSL-SQLSARN 1016 ++E+LD+ + + E+LE + + + WI+ + N V + + Sbjct: 1060 VWENLDYEKIDTKEQIEEQLENMLTTEEKKSI---WISDFYRFAKNPLAVRMKAAAQRGQ 1116 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 E F + + + + ++++ + +++G ID F E Sbjct: 1117 LYREQPFVIAMPA-------NQMKKEYE-----------TEEEILVQGIIDAYFEEEDGL 1158 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 L+DYK++ + + +Y +Q + Y AL + + Y Y Sbjct: 1159 VLVDYKTDKVQKG---------QEKELIEKYKVQMRYYKKALEMITDREVKEIYIYSTGI 1209 Query: 1136 GGVI 1139 G + Sbjct: 1210 GKAV 1213 >UniRef50_C1SHH7 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH7_9BACT Length = 811 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 257/846 (30%), Positives = 425/846 (50%), Gaps = 51/846 (6%) Query: 337 ETVAREKRRRGELGFDDMLSRLDS-ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 E + K++ +DD+++R+ + + +E ++ ++ +F A+IDEFQDTDP QY Sbjct: 3 EVLETHKQKNNIQSYDDLITRMRNSVMENEGHGNMSISVNRKFNAALIDEFQDTDPHQYD 62 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 IF ++ + +IGDPKQAIY+FRGAD++ Y+KA SE YTL N+RSAP +V+ Sbjct: 63 IFNTVFG-RYGKPFFMIGDPKQAIYSFRGADVYVYLKAASEEGNQYTLTKNFRSAPELVD 121 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 +VN F + ++AFM I +IP S G ++ L + QP M +W E Sbjct: 122 AVNSFFQR-ENAFMEPRIEYIP--SVGGHKELALTVAEKPQPHMIVWETEK------TKP 172 Query: 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 +A A I + L G A + + V+ SDI+VL R+++E V++ALT Sbjct: 173 EEIALSTARHISELLNKSSYGSAHIN----GKAVKPSDIAVLCRNKKEMTMVKEALTYCR 228 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 +P+V +S ++VF + EA EM+ +L AV++P ++ +++ALA+S G A +I + + Sbjct: 229 VPAV-VSGSENVFSSDEAVEMVNILSAVISPFSQSHIKTALASSAFGYTAKEIYHI-TET 286 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ 695 WD + EEF Y + RG PM + S R + + L GER+LT+++HI+EL Q Sbjct: 287 DQWDDITEEFRNYNDMISLRGFAPMFFHMASVRKLYKRLAKLPSGERKLTNLIHITELAQ 346 Query: 696 EAGTQLES-EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754 + ++ ++RW+ + I + +++++SD++ V I+TIHKSKGLEY +V+ Sbjct: 347 QFEANRKAAPQDILRWMKEKISNAEMRDEESELKMDSDENAVTIITIHKSKGLEYNIVYT 406 Query: 755 PFI----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 PF+ N + + A YH F +LD+ E+++ + E E LR+ YVALTR+ Sbjct: 407 PFLMFSRGNNKRPDYAKYHKEDKF--ILDVAGTDEAIEKTQQEEQQEKLRIAYVALTRAK 464 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 870 C SAL L+ + + +G ++A + Sbjct: 465 SVCFTAWGEGTGHDK----------SALAYLINGEQSKFDSGRLH--SFFRGSNVAIKPL 512 Query: 871 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 930 Q ++ +++ +T W++ S+S L + + D Sbjct: 513 PDTAVQTYKGSEI-QPTGKNRTFTSEITPPWQINSFSRLIH-----SSSSVRDTDQFTMK 566 Query: 931 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF---TQPVDPNWVREKLELGGFESQWE 987 + L FP+GA GT LH E+ DF + V E+L+ F++ + Sbjct: 567 DETSDSSGRLDIFTFPKGAKAGTCLHECMEETDFENFSALSVAETVEERLKAFSFDTDFT 626 Query: 988 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR--QFDP 1045 P +T+ I +L ++ G L L + EMEF + ++P + + R + Sbjct: 627 PAVTQNILTILNKDMH--GTCLKDLKQGDYIHEMEFQI-ATKPFRPEPVSEIFRNSGQND 683 Query: 1046 LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 + L F ++G + GF DL+F G+YY+LD+KSN LG Y+ + M A M Sbjct: 684 YADAASTLSFDAMQGFMNGFADLIFCQRGQYYVLDWKSNHLGMTPENYSMERMHAEMLGS 743 Query: 1106 RYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLI 1165 Y +Q +YTLALH +L+ + Y Y+ H GG IY+F+RG+ E +GIY RP I Sbjct: 744 HYYMQMHIYTLALHMHLQRYLKGYSYDKHMGGGIYVFMRGIH-EKGNEGIYFHRPEKDTI 802 Query: 1166 ALMDEM 1171 ++E+ Sbjct: 803 CRLEEL 808 >UniRef50_C4L3Q8 Recombination helicase AddA n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Q8_EXISA Length = 1205 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 234/1264 (18%), Positives = 432/1264 (34%), Gaps = 189/1264 (14%) Query: 1 MSDVAETLDPLRLPLQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + +G L+ A+AG+GKT + LL LT + + Sbjct: 1 MTVKWTNDQFAAIEARGSHVLVSAAAGSGKTAVLVERLSSRLLDETDE------LTADRM 54 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 LVVTFT AA AE++ RI + E D+P E + + Sbjct: 55 LVVTFTNAAAAEMKRRIAKALEEALR-------DDPTNEYV--------------RKQRQ 93 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPR 177 ++ A + TIH FC ++ N + + ++ E+ L L+ + Sbjct: 94 MLNRALITTIHSFCLEVIRENYYLLDLDPAFKIAEERDLVLLQDDVLEEVLEEEYGKQDT 153 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA------------SRHAQI 225 + +V +I + G + P D L A + Sbjct: 154 DFFALVDAYTSDRGD--SEIEDLILGLYHYARTLPNPDAYLDKLVSMYTFGEDPDEEAIL 211 Query: 226 VARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWI-------DKISAWAEEETN 278 + + AV +L L + + N + I + W+E ET Sbjct: 212 IEFGQMLWHDIEKAVRDLRKLEAELRVAGYEPQSENIRQAIFPFEQLEGETIVWSELETA 271 Query: 279 SYQLPESLEKFSQRF-----LEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV------ 327 + + K + + K + + L A++Q + + V Sbjct: 272 ARAMKFGTMKAVPKKEEHQIYHEVLKPAYDQAKKKLTAAVEQARVSGADLLESVSMQQPL 331 Query: 328 ---ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-VLAAAIRTRFPVAMI 383 + R + + + KR R + F D+ + LR + G +AA + RF ++ Sbjct: 332 VETLVRTVRAFGQAYEQAKRDRAFVDFSDLEHYALAILRQDGGPSDVAALYKERFAEVLV 391 Query: 384 DEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEV----- 437 DE+QDT+ Q I + + + E L ++GD KQ+IY FR A+ ++ + Sbjct: 392 DEYQDTNEIQETIINLVANEREEIGNLFMVGDIKQSIYRFRHAEPGLFIDKATRFRQANT 451 Query: 438 HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 L N+RS ++ +N LF Q D E+ I A + R P Sbjct: 452 GKRIDLSQNFRSRSEVLYGINDLFVQLMD----EEVGEIAYDEAAQLVPGREYEPIPADP 507 Query: 498 AMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + + Q + A +I + + + + + R DI +L Sbjct: 508 EFILV---DGASRELSKQEVEGRAIATRILELVSGDEPFKVTDESTGQLRNCEYRDIVIL 564 Query: 558 VRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 VRS++E Q+ D LT IP+ S+ F+ E + +L LL+ + P ++ L AL Sbjct: 565 VRSKKERVEQLMDILTQYNIPAYTDSDG-GYFQATEIRMILALLKVIDNPLQDIPLAGAL 623 Query: 617 ATSMMGLNALDIETLN--NDEHAWDVV-----------------VEEFDGYRQIWRKRGV 657 + M + ++ + +++ ++ + ++ +R R + Sbjct: 624 RSPMFRFDDGELARIRLESEDSFYEALKAKADDDDELGVKCGEMLDRLSRWRTYARNHSL 683 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISEL-LQEAGTQLESEHALVRWLSQHIL 716 +++ L + + GG+ R ++ + + L + + +R + + L Sbjct: 684 SELIQQLFNDTGFYDFSGGLPGGKGRQENLKALYDRALAYERSGYRGLYRFLRVMDR--L 741 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ----AFYHDRH 772 + S+ L ++++V+I+T+HKSKGLE+P+ + + + +H ++ Sbjct: 742 QDTGEDLSEARSLGDEENVVRIMTVHKSKGLEFPVTIVAQLGKQFNKRDQMQRVIFHKQY 801 Query: 773 SF---------EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAP---- 819 + +A AE++R+LYVALTR+ L Sbjct: 802 GISLDAIDVVTRTKSETFVKEMIRRDLDATMKAEEMRVLYVALTRAKEKLILVGTVGEPL 861 Query: 820 ----------------LVRRRGDKKGDTDVHQSALGRLLQKGE---------PQDAAGLR 854 R + K D AL RL P Sbjct: 862 KHLQQWLQVGQSGDLLASEARREAKTYLDWIAPALLRLPSATSFIESFGFTVPSTFQEST 921 Query: 855 TCIEALCDDDIAWQTAQTGD--NQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQ- 911 + I + + + A + Q V + + + R +Y + Sbjct: 922 SWIYRVIGEADLAEIATLQEMMAQLHHVQRFEAIDFPIQNEEETIRAVKRALTYEYPARD 981 Query: 912 ----RGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-------GASPGTFLHSLFE 960 +L + ++ A V P TP++ P+ GA GT LH +F+ Sbjct: 982 AVRTAAKQTVTELKRAMQLEQAAFEDPV-RPIDTPYREPKWRQVKQTGAERGTTLHLIFQ 1040 Query: 961 DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQ-LSARNKQV 1019 D QP+ + +++ G I + E G +L+ L Sbjct: 1041 LADPNQPIVDQINQWEMQ-GMLSPVEAETARLAIPDIEMFFQTEVGQALADALERGTAWR 1099 Query: 1020 EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLL 1079 E+ F + P P F +++G ID ++ Y LL Sbjct: 1100 ELPFTYTV-----------------PAERVNPDGHFTDEHVLIQGIIDCLYFDGDSYVLL 1142 Query: 1080 DYKSN---WLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA-DYDYEHHF 1135 DYKS+ L + A RY +Q QLY A+ R+ Y Sbjct: 1143 DYKSDAVTHLSDSRED------AHERLRERYAIQLQLYREAIETIWNIRVERTLIYSLDL 1196 Query: 1136 GGVI 1139 G++ Sbjct: 1197 QGIV 1200 >UniRef50_Q6MFB6 Putative exodeoxyribonuclease V beta chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB6_PARUW Length = 1166 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 291/1221 (23%), Positives = 502/1221 (41%), Gaps = 133/1221 (10%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 +L L L+EASAGTGKTF+I + +RLL+ L + ++LVVTFT+AAT + Sbjct: 5 QLILHQHYLLEASAGTGKTFSIQNIVVRLLIENQLEQEA---LPLSKILVVTFTKAATRD 61 Query: 72 LRGRIRSNIHELRIACLR--------ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 L+ RIR NI E T + L + I+ +A + L A + D+ Sbjct: 62 LKLRIRLNIEYALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQ 121 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQ 181 A +FTIH FC RML A ES + F E+ DF+R AQ Sbjct: 122 AQIFTIHAFCARMLRQYAIESDIGFHASYGEETFPPSEILAVIQDFFRTEIRLENFSPAQ 181 Query: 182 VVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW-RDAV 240 + P + + R +Q + P T + Q + + +++ + + Sbjct: 182 LEIILKHDPDQ--KKLLRAIQSGYEFEELP-----TFQQIYQQFLEGMQNLQRTYSISSS 234 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 ++ E + R ++A + KIS + + E+ ++ LE Sbjct: 235 LLMEDFQEQAPFFRNYKGAKSKADTLIKISRFVALFDQTEWTVENFDQLICDGLEWVLAL 294 Query: 301 GGETPRHP-------------LFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRG 347 + ++P L + + ++I R ++ + +R Sbjct: 295 DPKLLKNPAASFRLNYPGFTALLHHTLERVVYLARDESILIARLAKACQKLLRNYQREEE 354 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPE- 406 +L DD+L ++D A+ E+ I+ + A+IDEFQDTDP Q++IFRR++ Q + Sbjct: 355 KLSPDDLLRKMDWAIGQEN---FLKQIQMIYQAAIIDEFQDTDPLQWQIFRRLFLPQDKT 411 Query: 407 --TALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFS 462 L L+GDPKQ+IY+FR ADI+TY+ A + ++LD N+RS P +VN++N LFS Sbjct: 412 WKGYLYLVGDPKQSIYSFRQADIYTYLAAAQALGHEHCFSLDVNYRSQPALVNALNVLFS 471 Query: 463 QTDDAFMFR------EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 + + PV ++ NQ F + + A+ ++ +G + Q Sbjct: 472 PDHTPKFIPLPKTNFHLTYQPVFASTFNQTRLF---EDEKGAVHFFMGDGSNKKNSTIQD 528 Query: 517 TMAQ----VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 + A +IR + + S +VLVR R +A ++ + Sbjct: 529 LEQKVFFPFIAQEIRRL--------------RKQKTLAYSQFAVLVRDRYQALRLAEYFD 574 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 ++P + S+ E+ ++ L++AV+ P+ TLR+ L S++G + + Sbjct: 575 SYQLPYLN-QRGTSLAESPALNALIDLIKAVLHPQNIGTLRTLLGNSLIGWSHEKLH--- 630 Query: 633 NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALM------SARNIAENLLATAGGERRLTD 686 D + ++ +Q+ ++G + + +I E LLA GG D Sbjct: 631 -DSSNLESILSVIQSLKQVLIEQGFSIFYDRFLQSCWGKNKLSILEQLLAKEGGVDFYHD 689 Query: 687 ILHISEL-LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 + I+E+ + + L+ +L Q ++ + + K ++I+T+H SK Sbjct: 690 LQQIAEIVINHQYHEWNGPEGLIPFLDQFQKWDENEDPRVKRFQDPSKDGIKILTLHVSK 749 Query: 746 GLEYPLVWLPFI-TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYV 804 GLE+ +V+ + +++ ++ ++ L + E E AE +R LYV Sbjct: 750 GLEFDIVFALGLIQRNSFKDELIPIEKEGKFVLIPLEESSEQRLHYCEEIDAEKMRQLYV 809 Query: 805 ALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD-----------AAGL 853 A+TR+ + + ++ + K G+ LGRL Q + + + Sbjct: 810 AMTRAKYQLYIPISLHIPSEQIKYGEASPLDLLLGRLGQTECSYETLYDRIRHFNGQSFI 869 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 + E +D+ + + + + + V +L + ++S+S L + Sbjct: 870 KFMEEIGSQNDMTYSIHREIFLEKNKKDSVPFIDLEPPKSISILTTPLLMSSFSSLNRIS 929 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV 973 P T H P + G +H L E + F N Sbjct: 930 SFSLSQTPPHD----------FNNSIKTEHTLPASSETGILIHELLEKISFRDFKGINLA 979 Query: 974 REKLE------LGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYL 1025 E L WE VL + VL L + L+ + EM F Sbjct: 980 VETLPLIRPWIQNEMYRPWENVLAALVYQVLNVDLGIYSSPFCLADIEPSKLVREMTFLF 1039 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 P L L ++ +G++KGFIDL+F H+G+YY++D+KSNW Sbjct: 1040 PYESDLAIEGL-------------------VEGQGLIKGFIDLIFVHKGKYYIVDWKSNW 1080 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRG 1145 LG + Y + AM H Y +Q ++YT AL RYL+ + +E FGG YLFLRG Sbjct: 1081 LGSSNECYDFFHLHQAMLDHNYFVQAKIYTEALKRYLKL-VETRAFEECFGGFFYLFLRG 1139 Query: 1146 VDKEHPQQGIYTTRPNAGLIA 1166 + + Q GIY LI Sbjct: 1140 IQ-SNKQSGIYFCDA-QDLIK 1158 >UniRef50_C0WLM5 ATP-dependent deoxyribonuclease, subunit A n=3 Tax=Lactobacillus RepID=C0WLM5_LACBU Length = 1254 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 212/1301 (16%), Positives = 435/1301 (33%), Gaps = 228/1301 (17%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M + ++ G L+ ASAG+GKT + + ++ + + +++LL Sbjct: 1 MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKN--------QGINIDQLL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT AA E+R R+R ++ ++ + LL R+ Sbjct: 53 VVTFTNAAAKEMRERLRGSLQSEFSK------------------ATDPESKKHLLTQIRK 94 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 + A + T+ +CQ++++ + G+ +++ D + L + D R Y + Sbjct: 95 VAVADITTMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED 154 Query: 179 I-AQVVFETWKG-----------------------PQALLRDINRYLQGEAPVIKAPPPD 214 + E + P L D + + + Sbjct: 155 HTFADLTENFSNDRSDEGLTNVIFQMDEFANVNEDPDKWLNDAASFYEISDQGLIHSELY 214 Query: 215 DETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAW-- 272 ++ + V R+ Q + + + + ++ + + K + + + W Sbjct: 215 TALISREVSDAVKRLVISHQAIIKMAQKAELEKDEALFTKQLESVTQLQKGVIEAADWDG 274 Query: 273 ---------AEEETNSYQLPESLEKFSQ-----RFLEDRTKAGGETPRHPLFEAIDQL-- 316 E T + ++ E Q + D+ K + F +Q Sbjct: 275 LRQLITGFDFESMTKAKLTKDADEHQKQVHKLVKGTNDQMKKQWQKLVTGYFAWNEQDNV 334 Query: 317 -LAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS--ESGEVLAAA 373 L R + + R + K RR + F D+ L E + + Sbjct: 335 DLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQAKQVRQR 394 Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKA 433 ++ ++ M DE+QD + Q I +I ++GD KQ+IY FR AD ++K Sbjct: 395 LQDQYYEIMTDEYQDNNRLQDAILNKIAR-SDRGNRFMVGDVKQSIYRFRLADPTMFIKK 453 Query: 434 RSEVHAH------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR---------EIPFIPV 478 +++ +L N+RSA + + N +F QT D + + Sbjct: 454 QAQYIEQDNDNELISLSENFRSAKNIDDFTNLVFEQTMDHRVGDIAYTGKSKLQFGATYY 513 Query: 479 KSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEA 538 K +++ ++ A G + D S A++ A +IR + + Sbjct: 514 PDDMKADVSLIIYRTKSSAAATSNEDLGAGDQIEDSDSGQAEIIAQKIRTLVDD--KQLI 571 Query: 539 LLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 ++ RPV DI+++ + + D T IP+ ++ S F+T E Q M+ Sbjct: 572 YDKKLEEMRPVTFDDIAIISPTHNNELTLSDIFTQYGIPA-EITGAKSYFKTTEIQIMMS 630 Query: 599 LLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEH---------------------- 636 LL + P ++ L + L + ++GL+ + L + + Sbjct: 631 LLSIIDNPFQDIALVAVLHSPIVGLDENQLAFLRINRNTGNYYQAVLDFYRGFDRLEPND 690 Query: 637 -------AWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 D +++ ++ + ++ G++ ++ + + + G +R T++ Sbjct: 691 YATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQTGYLDYVGGMPAGLQRQTNLHA 750 Query: 690 ISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + + + V+++ + + + + ++ V ++TIH SKGL+ Sbjct: 751 LYDRAADYEKNGFKGLFQFVKFIQRM---QERDNDLANANPTTSENTVHVMTIHGSKGLQ 807 Query: 749 YPLVWLPFITNFRVQEQAF---YHDRHSFEAVLDLNAAPES----------VDLAEAERL 795 +P+V+L + + + H + LN +D+ + L Sbjct: 808 FPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTREFRSPLQKQAILDMTKNAGL 867 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGD-------KKGDTDVHQSALGRLLQKGEPQ 848 +E++R LYVA+TR+ L + GD +G TD ++ L ++ Sbjct: 868 SEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQGLTDANELVLPAAVRNAAKS 927 Query: 849 DAAGLRTC----------------------------IEALCDDDI--------AWQTAQT 872 + ++ D+ I A QT+ Sbjct: 928 YLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYDDERITKESGRQKANQTSPN 987 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT---------SYSGLQQRGHGIAQDL--- 920 ++ A+ + ++ + T S S +++ Sbjct: 988 DFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQSVSEIKRLFDDPDNTQLSG 1047 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQF-------PRGASPGTFLHSLFEDLDFTQPVDPNWV 973 LDV+ + QF P GT H + + +D T + Sbjct: 1048 YSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTATHLVLQQIDLTTVPTIERI 1107 Query: 974 REKLELGGFESQWEPVLTEWI--TAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + + P + I VL+ +E G + N E F L + Sbjct: 1108 EALIANLLKQQVISPEVASQINVDEVLRFYQSEVG-KYVLANPENTHREAPFSLLMKARD 1166 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 + + + ++ G ID YL DYK++ + Sbjct: 1167 VFKDFQ----------------DNDEQTILIHGIIDGYVATNEAVYLFDYKTDHI----- 1205 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDY 1131 T + + + RY Q +LY LAL + L I Y Y Sbjct: 1206 --TPKTTISDIVD-RYRGQLELYGLALSKILGRPITHKYLY 1243 >UniRef50_Q3AA35 ATP-dependent helicase/nuclease subunit A n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=ADDA_CARHZ Length = 1167 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 215/1232 (17%), Positives = 429/1232 (34%), Gaps = 177/1232 (14%) Query: 2 SDVAETLDPLRLPLQGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 + AE + + +G L+ A+AG GKT + L +L P+ ++ LL Sbjct: 3 NWTAEQMRAITS--RGNALLVSAAAGAGKTSVLVERVLSRVLTDTP------PVDIDRLL 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFTEAA E++ R+ + + L+ ++P R+LE+ Sbjct: 55 VVTFTEAAAGEMKERLGTEL-------LKRLNEDPGNSRILEQ--------------LEL 93 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 + A + T+H FC +++ G + ++E L+ + + RE Sbjct: 94 LPVADISTLHSFCHKIIRKYGRVCGYETKFAILEGPRETYLKNKVLEEILEERYEKGDRE 153 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW-- 236 + ++ + + R++ + ++ P ++ L + + + Sbjct: 154 LFALLE--YLNDEKNDRNLKELILNLYHFSRSNPEPEKWLLDSLNLFNGNWERFEDTFWY 211 Query: 237 -------RDAVGELDALIESSGIDRRKFNRSN----QAKWIDKISAWAEEETNSYQLPES 285 + + L+ + K+ ++ A+ ++K+ + Y+ + Sbjct: 212 REIKSSTEMWLEYILELLGRAKSVAEKYGQARAFSLLAEDMEKVRGLYAKLNEGYEAAKQ 271 Query: 286 LEKFSQ----------------RFLEDRTKAGGETPRHPLFE-AIDQLLAEPLSIRDLV- 327 + + L D+ K ET + F E ++ + Sbjct: 272 YLSQVKFGTFSWGRGVGGKDEAKDLRDKAKEQFETIKKRYFSWEAGNFREELRTLTSYLD 331 Query: 328 -ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEF 386 + + + E EKR+ G F D+ L+S + +R ++ ++DE+ Sbjct: 332 PLVKLVREFSRKYQEEKRKHGFADFSDLEHWALDILKSG----VYRELREKYVEILVDEY 387 Query: 387 QDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLD 444 QD + Q I + L ++GD KQ+IY FR A ++K + L Sbjct: 388 QDINGLQEEILTYVSR--DGQNLFMVGDVKQSIYRFRWARPEIFLKKYEDFTDEKKIELS 445 Query: 445 TNWRSAPGMVNSVNKLFSQTD----DAFMFREIPFIPVKSAGKNQALRFVF-KGETQPAM 499 N+RS ++ +VN +F Q + E F+ + A F Sbjct: 446 LNFRSREEIIATVNFIFKQIMKKRVAELSYDEKAFLKKGADYLPNANCFAELHLIEGKPE 505 Query: 500 KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 + GE A++ AA+I + G + + RP++ DI +L R Sbjct: 506 EDINSNGEPEEDLTAVHREARLVAAKILKLKEEG--FKVFDRETKEFRPLQYRDIVILSR 563 Query: 560 SRQEAAQV-RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 S ++ + ++ LT IP VY+ S + E M L+ + P ++ L + L + Sbjct: 564 SLSNSSNIWQEELTRAGIP-VYVEGAGSFLNSKEILLMTSFLKVIDNPCQDVPLAAVLCS 622 Query: 619 SMMGLNALDIETLNND---EHAWDVV-----------------VEEFDGYRQIWRKRGVM 658 + GL ++ + + +D + +E ++++ R+ + Sbjct: 623 PVAGLTYEELWQVRKEYPEGLLYDALKNKSLGKDELSVKSQKFLELLVEFQKLSRQISLA 682 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILE 717 ++ + N+ E A GGE R ++ + +L A + + +LSQ Sbjct: 683 ELVNEIYRKTNLPEIFGAYPGGEVRQANLKLLHDLAVDFAEINGGGIYNFLTFLSQ---A 739 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV---QEQAFYHDRHSF 774 +S S + +V+++++HKSKGLE+P+V++ + F H F Sbjct: 740 AESEDFSPAKLIGEADDVVRVMSVHKSKGLEFPVVFVVGLGKRFKFDYSNTVFLHSDLGF 799 Query: 775 EAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 A+ + E LAE++R+LYVALTR+ L + Sbjct: 800 GPKFFDPEKRIRRHSIASQILSERMRRETLAEEMRILYVALTRAREKLILVGTVKNLAKK 859 Query: 826 DKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD-------IAWQTAQTGDN--- 875 + AL L G+ A I + + + + + Sbjct: 860 MAGWQSQTE--ALKDTLSDGQIARAGNFLDWIGPVVFREGSDLPDCLKVEVHPQQEKIEG 917 Query: 876 QPWQVNDV-STAELNAKTLQRLPGDNWRV-----TSYSGLQQR---GHGIAQDLMPRLDV 926 + W++ +V L + +Y GL+ DL Sbjct: 918 EQWELPEVLRVKLLTKTPFTEETDYTGQFRAGLEFNYPGLKIAKLPAKMSVSDLKEVFST 977 Query: 927 DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQW 986 D +E L F GA G H +DF + + ++ + E E Sbjct: 978 DDVISLEDEDEVFLPGVYFEDGAMLGIVYHEFLRRIDFQGDLSASGLKAQGETLVAEGVL 1037 Query: 987 EPVLTEWIT-----AVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 P E + + PL + + ++ E F L + Sbjct: 1038 PPESREMLDFTKIARIFATPLGQRILRAREIYP-----EFPFTLGVK------------- 1079 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 P + +++G IDL+ E ++++D+K++ + + + + Sbjct: 1080 ----AGEIYPEATGFSEKILVRGVIDLLALEEDGFFIVDWKTDRV---TGDILNERLKE- 1131 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIAD-YDYE 1132 Y Q LY A+ ++ + Y Y Sbjct: 1132 -----YAGQLNLYARAVEEITGKKVKEKYLYF 1158 >UniRef50_C0GDI3 Recombination helicase AddA n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDI3_9FIRM Length = 1229 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 219/1282 (17%), Positives = 407/1282 (31%), Gaps = 205/1282 (15%) Query: 6 ETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFT 65 E L+ + L+ A+AG GKT + +RLL PL ++ LLVVTFT Sbjct: 8 EQLEAIETT-GCNLLVSAAAGAGKTAVLVERIIRLLCHE------ENPLDIDRLLVVTFT 60 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 EAA AE+R RI + + E R L ++ A+ Sbjct: 61 EAAAAEMRERISAAMEEKIAHSGRGD----------------------LARQLSLVNGAS 98 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE 185 + T+H FC ++ + M ++ ++ Q + A Sbjct: 99 ISTLHSFCLDIIRRYFYLLDMDPGFRVADEREAQMLQQQVLDQLLEDAFQSGDAAFHELA 158 Query: 186 TWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASR------------HAQIVARIDTVK 233 G + + R + + P + LA + + +K Sbjct: 159 HRYGGKTADEGLGRLILRLYRYTWSNPWPRQWLAEAATAFNVPEGVETEEGLEKWLPPLK 218 Query: 234 QQWRDAVGELDALIESSG-----------------------IDRRKFNRSNQAKWIDKIS 270 + ++ + ++ +G + + + Sbjct: 219 EHLGLSLAHAKSSLQRAGKLCNRPGGPLAYENRLLEDLEQVENLESLVAGSWDALREAWQ 278 Query: 271 AWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFE-AIDQLLAEPLSIRDL--V 327 + + + + K + L + K FE + L E + L V Sbjct: 279 GLDFKRLPAVKDCDEELKEQVQALRKKAKEALSKIGKTFFERSAADYLREIGELAPLIEV 338 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-------VLAAAIRTRFPV 380 +T +A + K+ G L F+D+ L +E A +R R+ Sbjct: 339 LTSLVARFAGEYGQAKKMYGLLDFNDLEHHCLQILMAEDAPPGEIIPSEAAREVRARYEH 398 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFRGADIFTYMKARSEVH- 438 ++DE+QD +P Q I + T L ++GD KQ+IY FR D +++ Sbjct: 399 VLVDEYQDINPVQDAILTLVSRQGETTPNLFMVGDVKQSIYRFRLGDPGLFLERYRRYPA 458 Query: 439 ------AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK 492 L N+R G+V +VN LF Q + + Sbjct: 459 EKGKKERKLLLSKNFRCRHGVVTAVNYLFRQLMTTQAAELEYDREAELVCGAHYPEPSQE 518 Query: 493 GETQPAMKMWLMEGESCGVGDYQ-----------STMAQVCAAQIRDWLQAGQRGE-ALL 540 + + + L+E E G D Q A V A QI L Sbjct: 519 CKISGLVDVHLLEREQDGDHDRQGDDEGEDLDALEREATVIAGQILVLLNGPDGARYVFD 578 Query: 541 MNGDDARPVRASDISVLVRSRQEAA-QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 RPV DI +L+R+ +A ++ + L IP+ Y F E + ML L Sbjct: 579 KEEKAYRPVTYRDIVILLRATSNSANRLVEILARHGIPA-YADLSSGYFAATEVETMLSL 637 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE--------------- 644 LQ V P ++ L + L + ++GL D+ + D + Sbjct: 638 LQVVDNPRQDIPLAAVLRSPLVGLTVEDLAAVRQAGERNDDFFDAVLAASQQQFPGLSEK 697 Query: 645 -------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697 + +R + R+ + + A+ ++ + G +R ++ + ++ Sbjct: 698 LTDFLTTLERWRTLARRETLATFITAVYRESGYSDYVAGLPDGAQRQANLRALFSRARQF 757 Query: 698 GT-QLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 + + ++ Q + +++ L +++V+I++IHKSKGLE+P+V L Sbjct: 758 DRFARQGLFRFLSFIEQLRRSGEDLGTARA--LGEKENVVRIMSIHKSKGLEFPVVILGD 815 Query: 757 ITNFRV----QEQAFYHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLY 803 + + + H R ++ + EAE AE++R+LY Sbjct: 816 LGKTFNFQDQRSEMLVHRRLGLGPLIVEPEKKLRYPSLPYLALKIMGEAETRAEEMRVLY 875 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ--SALGRLLQKGEPQDAAGLRTCIEALC 861 VALTR+ L + + + + L L + Sbjct: 876 VALTRAREQLILVGSARGLDKHLESWRQLLAHCGEQLPASELTRARTYLDWLGRALIRHG 935 Query: 862 DDDIAWQTA--QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWR----------------- 902 D + +T Q G+ +++ L+ ++R + + Sbjct: 936 DVEGRTETYTWQAGEESRFRLTVWDRESLSEIAVKREGEEEYTKRDAILSLRRVKVDTAD 995 Query: 903 ------------VTSYSGLQQRGHGIAQDLMPRLDVD--------AAGVASVVEEPTLTP 942 Y+ L +L R A S + Sbjct: 996 DLREEIRTRLAYKYPYARLDLPAKLSVSELKRRFSELEEEEGEKKAFTPTSWSRPAFIQQ 1055 Query: 943 HQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITA-VLQAP 1001 A G H + + LD + +D + ++ T+++ ++ A Sbjct: 1056 KAGLSPAERGILYHQVLQHLDLSLSLDERGIEGQIHYLQKAGVLAEEATDYLDPGLIAAF 1115 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 + Q E F L + IA+ + Sbjct: 1116 FTSEAGRVVQKYRSEVYREWPFTLSLPAAEIATGNG-------------------DESLI 1156 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 ++G IDL+ R + ++DYK++ L A RY+ Q + Y A+ Sbjct: 1157 IQGIIDLLVRTPQGFVVIDYKTDRLPGGGLN---------ELAKRYEEQLRYYARAVETI 1207 Query: 1122 LRHRI-ADYDYEHHFGGVIYLF 1142 L + Y Y G + +F Sbjct: 1208 LSVPVCGAYLYAFAAGESVRVF 1229 >UniRef50_C7XXL2 Recombination helicase AddA n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XXL2_9LACO Length = 1281 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 208/1330 (15%), Positives = 409/1330 (30%), Gaps = 270/1330 (20%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + L+ ASAG+GKT + ++LL R L ++E+L+VTFT+ A +R R Sbjct: 18 DRDILVSASAGSGKTAVLVDRVVKLLKEN-------RHLNIDEMLLVTFTKEAAKNMRER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 IR + Q + ++ A + TIH FC++ Sbjct: 71 IRKRLVADSND-------------------------QHMKTQINRLALANISTIHSFCEQ 105 Query: 136 MLNLNAFESGMLFEQQLIEDESL---LRYQACADFWRRHCYPLPR----------EIAQV 182 ++ + G+ + +L+ D + L+ Q D + ++A+ Sbjct: 106 VIKRYYYVIGLDPQYRLVTDATEQALLKEQVWNDLQEKRFKEDYAKADPSKWHFSQLAEN 165 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA-------QIVARIDTVKQQ 235 + L+++ L EA P + Q T+ Sbjct: 166 FADAKSNVGEGLQEVVEKLYQEANAQPDPDQWLSQTERNYQFGDDPIIQTTFYQQTLLPI 225 Query: 236 WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ---- 291 R +L A E N A+ + ++ S E +Q Sbjct: 226 LRQFFDQLIADWEGLVTKASTSGFDNLAETLTGDLILVKDLQKSLTTATWDELQAQISGI 285 Query: 292 -----------------------RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVI 328 + + K +T + F+ ++ L + +++ Sbjct: 286 KFGRLKTQRFKDDPDGKAHYDELKDGRNELKKRLKTLQDKYFQYDERELRAKTAAARMMV 345 Query: 329 TRAL---AEIRETVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMI 383 + + R++ K R L F D+ L +S++G+ + +R + ++ Sbjct: 346 EELVSVTKDFRQSYQEAKLARHMLDFSDLEHYAYQILTNQSDAGKQVLNELRHHYREILV 405 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------ 437 DE+QDT+ Q + ++ H L ++GD KQ+IY FR AD ++ Sbjct: 406 DEYQDTNRLQDDLLNQL-HDPQLNHLFMVGDVKQSIYRFRQADPTLFLDKYERYQSSSKN 464 Query: 438 HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 L N+RS + N +F+Q D + + + Sbjct: 465 DETIILAENFRSMNNVTEFTNLVFTQLMDRTVGEMPYDDQAQLKFAAKWYDPKEVSPVPT 524 Query: 498 AMKMWLMEGESCGVGDYQST----------------MAQVCAAQIRDWLQAGQRGEALLM 541 + ++ ++ + D + + A +IR L + Sbjct: 525 ELMVYDANADNETIIDKEENQQRYIKLPEGSDKYAGEVWMVAMRIRQMLDN--QERIYDP 582 Query: 542 NGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 RP++ +DI +L R++ ++ + L IP V + + + F+ E + M+ LL+ Sbjct: 583 ELGHERPIQPADIVILERTKSPNNRIVEQFGQLNIP-VVVQDVQNYFKATEVRTMISLLK 641 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETLN-----------------NDEHAWDV---- 640 + P ++ L + L + ++GL ++ L D W Sbjct: 642 VIDNPYQDIPLVAVLRSPIVGLTEPEMAYLRINHRYGNFYEAVQFFTQQDPEQWSATTDV 701 Query: 641 -----------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 ++ ++ +++ ++ ++ + + + GG +R ++ Sbjct: 702 DLEKLHVKLSRFLDRLTKFKVTAQQQSLVDLIWQIYQTTGYLDYVGGIPGGSQRQANLHA 761 Query: 690 ISELLQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + E + + + + ++ + + + +E V ++TIH SKGL+ Sbjct: 762 LYERAHTYEQSSFKGLYQFIHFIERMQKR---DEDLGEAPVELATDAVNVMTIHGSKGLQ 818 Query: 749 YPLVWLPFITNFRVQE---QAFYHDRHSFEAVLDLNAAPE-------------------- 785 +P+V++ + + + H + L AP Sbjct: 819 FPIVFVIDMNHHFNSRDVAGNLVIEPHLGIGIRYLGDAPMKGDDQSLTAENIKVTYDLPQ 878 Query: 786 ---SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS------ 836 D AE++RLLYVALTR+ L + + + S Sbjct: 879 RTVVADAITRANRAEEMRLLYVALTRAEQRLILTGSVNEKNSKNNLKALGKQWSKGLQGF 938 Query: 837 --ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN-------------QPWQVN 881 LG L+ + + D T Q W N Sbjct: 939 QTVLGPQLRLDSRSMLDWIGLTLVRTPQFDSQVMKMDTDGAPHQLGLPKADYSMQLWTAN 998 Query: 882 DVSTAELNAKTLQR----------------------------LPGDNWRVTSYSGLQQRG 913 V +T R + T+Y + Sbjct: 999 GVEKELAKLRTAHRETIVGDAGSQPLTADERQFIHRVLTMKYPYPAATKTTAYQSVSAIR 1058 Query: 914 HGIAQDLMPRLDV-------DAAGVASVVEEPTLTPHQF-------PRGASPGTFLHSLF 959 A + + + +F P GT H +F Sbjct: 1059 DVFANQDPDDAQMGRLTFNKTEVKDEGQYLQSSFNQPRFMQTGDSAPAPTEVGTATHLVF 1118 Query: 960 EDLDF-TQPVDPNWVREKLELGGFESQWEPVLTEW------ITAVLQAPLNETGVSLSQL 1012 + LD T V + V++ ++ E I Q L + + Sbjct: 1119 QMLDLTTGEVTADQVQQTIDQLVRERLIANRRIAAQIDVAGIVEFYQTALGQRILQ---- 1174 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 E F + + D L + L+ + ++ G ID + Sbjct: 1175 QPAAVVREQPFSMLLEG-------DQLFK----------NLDHDDGQILIHGIIDGYLKG 1217 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDY 1131 L DYK+++L A RY Q LY AL + ++ Y Y Sbjct: 1218 NQGIELFDYKTDYLLPHDD------QRLAEIVDRYQGQVNLYAAALRQMTGLPVSHRYLY 1271 Query: 1132 EHHFGGVIYL 1141 G + L Sbjct: 1272 LVKTGTLYEL 1281 >UniRef50_D1R7X5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X5_9CHLA Length = 1167 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 279/1216 (22%), Positives = 505/1216 (41%), Gaps = 117/1216 (9%) Query: 12 RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAE 71 ++ + ++EASAGTGKTF+I + +RLLL P+T++E+LVVTFT AAT + Sbjct: 8 QVNIHHHHVLEASAGTGKTFSIENIIVRLLLENP-------PVTIQEILVVTFTRAATHD 60 Query: 72 LRGRIRSNIHELRIACLR---------ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 L+ RIR NI + + + L + ++ + + L A + D Sbjct: 61 LKVRIRENIEKALSFLQGLLLSPHYCYQEAPDYLKAIQGRDPEEIKEIKKRLEHALFEYD 120 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQ---ACADFWRRHCYPL---P 176 +A +FTIH FC R L + FE + L E ESL + + +F+R P P Sbjct: 121 QAQIFTIHSFCLRTLKTHFFEGDLALH-TLTEKESLSQAEILKVIRNFFRTELKPTIYGP 179 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 ++ + + + L + + + P+ +P +++ ++A ++ + Sbjct: 180 THFQLLLKQYEQSIEKLETALVKVMTQGIPLAPSPSFEEQYALFKNAMLLLKDRGFSSHS 239 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK---FSQRF 293 + DR+K ++ + ++ ++E S Q ES+ + F + Sbjct: 240 ILTDFHTLIPLYKGLTDRQKRIKAETLSKVQLFASLFDQEEWSLQDYESVIEDQLFLVKA 299 Query: 294 LEDRT---KAGGETPRHPLFEAIDQLLAEPLSIR---DLVITRALAEIRETVAREKRRRG 347 L+ KA P + + LL L + + ++ + +++ Sbjct: 300 LDPSALTQKALSAPPPILILPNMLSLLKRHLEPLVNPLSTFAKLAYDCQKFLKHYQQQEE 359 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW-HHQPE 406 + FDD+L + AL+ + IR ++ A+IDEFQDTDP Q++IF ++ H Sbjct: 360 KFRFDDLLHNMLQALQDPTFT---ENIRNQYRAALIDEFQDTDPIQWKIFESLFLHEAYS 416 Query: 407 TALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQT 464 L L+GDPKQ+IYAFR ADI+TY+ A + +L TN+RS P +V +N LF+Q Sbjct: 417 GYLYLVGDPKQSIYAFRQADIYTYLSAAQAIGEDYRVSLTTNYRSHPSLVQGLNVLFAQE 476 Query: 465 DDAFMFREIPFIPVKSAGKNQALRFVFKG---ETQPAMKMWLMEGESCGVGDYQSTMA-Q 520 + + + QA F + ++ L + E + + + Sbjct: 477 NAPDFIHLPKWQKTLNYQHVQAADKTFGKTLTDEMGSIHFILSDQEKPSLDSLEEKVYFP 536 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580 A +I+ D +VLV R +A ++ D L IPS+ Sbjct: 537 FIAQEIQKLCHQNT--------------FEYQDFAVLVADRYQAQRMSDYFKTLNIPSLT 582 Query: 581 LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640 N ++ ++ Q +L ++ + + L+ AL + G N DI L D ++ Sbjct: 583 QRNA-NLADSPAVQCWQEILHGILHARQSSALKIALGGKIFGWNHEDILRL-EDPFFYEK 640 Query: 641 VVEEFDGYRQIWRKRGVMPMLRALMS------ARNIAENLLATAGGERRLTDILHISELL 694 + E R+ G + ALM + + E +L G L ++ I+ELL Sbjct: 641 TLAEIYFLRKKLLSEGFIAFYDALMHHQLFQDSHTLIEKILHQESGADFLDELCQIAELL 700 Query: 695 QEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 + + L+ +L + + ++ ++++ + VQI+++H SKGLE+ +V+ Sbjct: 701 IQKQNETHCPPEGLIAFLDEFPILKLNDDERLYKQVDTHRKAVQILSLHSSKGLEFEIVF 760 Query: 754 LPFITNFRV-QEQAFYHDRHSFEAVLDLNAAPESVDLAE--AERLAEDLRLLYVALTRSV 810 + +T + +++L + + + E AE +R LYVA TR+ Sbjct: 761 VLGLTKKNQAPSPLIPQSQEGSQSILQMVYDLQDPAYIDYCQELDAEKMRQLYVAFTRAK 820 Query: 811 WHCSLGVAPLVRRRGDKKGDTDVHQSA---------LGRLLQKGEPQDAAGLRTCIEALC 861 + + ++ + + +L ++ L + I+AL Sbjct: 821 YRLYVAALSPYEKQTAYGCASPIELFLAKLGQPSCTYAQLYERIHANSTESLISFIDALD 880 Query: 862 DD-DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL 920 + I + +++N + L + G+ ++S+S + ++ I Sbjct: 881 NSISITYTIESQVTPPCYEMNTTPSPILLPPPTIHISGEMLAISSFSQISKQMDQITP-- 938 Query: 921 MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-------PNWV 973 V + T H P G G LH + E F + D +W+ Sbjct: 939 -----VWTESPPHHFDASTKNLHTLPAGNITGLLLHEILEKFPFEKANDMQNPSEMRSWI 993 Query: 974 REKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYLPISEPL 1031 ++ F W+ VL E + L+ PL + +L + E+EF P + L Sbjct: 994 TPYVQNTEF-QDWDQVLAEMLFNTLKTPLPFKDATFALQDVQETKIFKEVEFLYPCEKGL 1052 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 L+ G LKG IDL+F H G++Y++D+KSNWLG + Sbjct: 1053 ---------------------LDLHIPEGFLKGVIDLMFEHAGKFYMIDWKSNWLGPNLQ 1091 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP 1151 AY+ ++ +M H Y LQ +Y +L RYL+ +D++ +FGG+ YLFLRG+D E Sbjct: 1092 AYSTTSLQQSMHQHHYHLQSAIYVESLKRYLKL-FNQFDFKANFGGIYYLFLRGLDIEEG 1150 Query: 1152 QQGIYTTRPNAGLIAL 1167 Q + P + Sbjct: 1151 QLFGFYALPEGKFLCT 1166 >UniRef50_Q0AXU8 ATP-dependent helicase/nuclease subunit A n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=ADDA_SYNWW Length = 1236 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 214/1311 (16%), Positives = 423/1311 (32%), Gaps = 249/1311 (18%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L+ A+AG+GKT + ++L+L + ++ LL Sbjct: 1 MAHWTIEQEEAINARNSNLLVAAAAGSGKTTVLVERIIQLVLRDR--------IDIDRLL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT+AA E+R RI + + + L Sbjct: 53 IVTFTQAAAGEMRERINAAFFKELEKGREDG---------------------HLRRQLYL 91 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPRE 178 ++ +++ TIH FC ++ + + ++ + + L++ + + Sbjct: 92 LNRSSISTIHAFCSDVVRQHFHLVNIDPHFRIADSTETELIKMEVLEELLDGEYEKGNDG 151 Query: 179 IAQVVFETWKGPQA-----LLRDINRYLQGEAPVIKAPPPDDETLA---------SRHAQ 224 +V L+ ++ ++Q + + LA ++ Sbjct: 152 FLDLVEAFGSNKDDKPLEALILRLHSFIQSHPQPLSWLEEKIDNLALGEDNWAENPWASE 211 Query: 225 IVARIDTVKQQWRDAVGELDALIESSGIDRRKFNR-SNQAKWIDKISAWAEEETNSYQLP 283 + +I +D + + L +G R + KW++ + A++ Sbjct: 212 LSQQIKIELSAAQDILNQALKLSNKAGGPRGYLEAIESDQKWVELLLKAADQGLPVLYSC 271 Query: 284 ESLEKFS----------------QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL- 326 F+ + L D +K L + L + I L Sbjct: 272 LQQLSFTRLGRVSRDVDENLKNQVKILRDESKKILNAINSLLGRDPLEYLQDLNEIYSLM 331 Query: 327 -VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 + + E +KR +G + F+D+ L +E +A R + IDE Sbjct: 332 KYLGEIIQSFAEIYQEKKREKGIVDFNDLEHLALQILSNE---AVAREYRDYYSYLFIDE 388 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------- 438 +QD++ Q I I + E L ++GD KQ+IY FR AD +++ + Sbjct: 389 YQDSNLVQETILNYI---KKEDNLFMVGDVKQSIYRFRLADPSLFLEKQKSYPLQDGSVN 445 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI--------------PVKSAGKN 484 L+ N+RS P ++N+VN +F + + K Sbjct: 446 RRVDLNKNFRSHPEILNAVNYIFRHLMSEELGEIDYDEKSYLYPGLNTGQELKYQEIDKA 505 Query: 485 QALRFVFKGETQPAMKMWLMEGESCGVG---------------------------DYQST 517 + K T +++ ++E + D Sbjct: 506 SSQEGKEKENTAKRVEICILENNPDLITKLEENETEEREIPGEAENDFIERIIEMDNTEI 565 Query: 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEI 576 A + A +IR +Q + R + D+ +L+R +R A + L+ I Sbjct: 566 EALLIAQKIRQLIQE----DIYDPELQCMRKIEYRDMVILLRATRNSAGIFMEQLSAEGI 621 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---- 632 P VY F+TLE + LL+ + ++ L S + + + G + D + Sbjct: 622 P-VYADASSGYFDTLELNLFINLLRLIDNKRQDIALLSVMRSPIGGFSIDDFIKIRTKLI 680 Query: 633 --------------------NDEHAWDVV---VEEFDGYRQIWRKRGVMPMLRALMSARN 669 N++ D + ++ + R + + L Sbjct: 681 PRREKQPYSFYEAMEFYMEDNNDDLKDRLVFFIQRLKEWELESRIMALDEFMGKLFMDTG 740 Query: 670 IAENLLATAGGERRLTDILHISELLQEAG-TQLESEHALVRWLSQHILEPDSNASSQQMR 728 A GG +R ++ + +E + + + ++++ + + + Sbjct: 741 YYYYAGAMPGGGQRQANLRILLHRAREFQKSSFKGLFSFIKYIEKI--KSSGSDMGNACI 798 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVL------ 778 + + ++V+I++IHKSKGLE+P+V L + E H + Sbjct: 799 IGENDNVVRIMSIHKSKGLEFPVVILGGLGKNFNIRDSNENVLLHRKLGIGPRYINTQLR 858 Query: 779 ---DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV-- 833 D A + + E LAE++R+LYVA TR + ++ V Sbjct: 859 TYHDTIARLAIKNRIKLENLAEEMRILYVACTRPQEKLIMVGTTRQLESAWRRWSQPVNS 918 Query: 834 -----HQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL 888 +S L L+ + + D + D W+V +S +L Sbjct: 919 YNQSRARSFLDWLIPI--IMRHKKEGQYLREIAGGDWDREILWE-DESRWKVKLISPWQL 975 Query: 889 NAKTLQRLPG-DNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT------ 941 A+ +++ W G +++++ RL+ + L+ Sbjct: 976 TAEEIRKKEEKYEWERLLEQGGYSCPSAESEEIIKRLNWKYPYQEAENIPAKLSVSQVSQ 1035 Query: 942 -----------------PHQFPRG----------ASPGTFLHSLFEDLDFTQPVDPNWVR 974 F G A G+ +H + +++D+ + + + Sbjct: 1036 ISSGYLEDGAADTFLTRVPAFLSGEKDKKTRLSPADKGSIVHLVMQNIDYRRVSREDSIN 1095 Query: 975 EKL-----ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISE 1029 ++L Q V I Q L + L A+ E F L I+ Sbjct: 1096 QQLGEMVEREILTSEQLAVVEVNKIWRFFQTKLGQRV-----LQAKWLFREAPFNLLIAA 1150 Query: 1030 PLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGED 1089 + L Q +++G IDL F LLD+KS+ + Sbjct: 1151 SEVFPAL------------------ESQEELLIQGIIDLYFYEGEDIVLLDFKSDIV--- 1189 Query: 1090 SSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVI 1139 + Y +Q +LY AL HR+ + Y Y I Sbjct: 1190 ------HHKSEEEILAPYRVQLKLYKRALENITDHRVKESYLYFFDLNRAI 1234 >UniRef50_UPI0001C36633 recombination helicase AddA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36633 Length = 1244 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 188/1292 (14%), Positives = 399/1292 (30%), Gaps = 228/1292 (17%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + + + L+ A+AG+GKT + +R++ PL +++LLV+ Sbjct: 4 NWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEG------KNPLDIDQLLVM 57 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFT+AA E+R R+ +A + ++P L + + Sbjct: 58 TFTKAAADEMRERV-------LLAVDEKLKEDPENSH--------------LQMQAAMIP 96 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQ--ACADFWRRHCYPLPREIA 180 A + TI FC ++ + + ++ ++ LL + + E + Sbjct: 97 YARITTIDSFCLGIIREHYNRLDIDPAFRVGDEGELLLLRGSVMEQMLEDYYEAGDEEFS 156 Query: 181 QVVFETWKGPQAL-------------------LRDINRYLQGEAPVIKAPPPDDETLASR 221 + V G + + + E + Sbjct: 157 RFVETYATGKSDRGIEDHIMAVYNFSGSNPWPEEWLTACETELENCEEERLMETEWMHFL 216 Query: 222 HAQIVARIDTVKQQWRDAVGELDAL-------------IESSGIDRRKFNRSNQAKWIDK 268 + + + Q +AV + + + + ++ + + Sbjct: 217 MWDVAMQTGELCAQLEEAVTVCEEENGPTAYIPMLTSDLRMLREIGKAEDYASLNELLGC 276 Query: 269 ISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV- 327 + S + + F + KA G+ FE+++ ++ + V Sbjct: 277 AAFDRLASIRSKDIDADKKAFVTGCRDRVKKAVGKLRDLYCFESMETVVRDMRGTAGAVR 336 Query: 328 -ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-------------------- 366 + + E + K+ + + F D+ L + Sbjct: 337 MLLKLAGEFNDRYQAAKQEKNLVDFGDLEHYALEVLLEKPDGESEECAGDSMDDSLDASG 396 Query: 367 --GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQAIYAFR 423 +A + +F ++DE+QD++ Q + I + T + ++GD KQ+IY FR Sbjct: 397 RRPSAVADELSRQFEEILVDEYQDSNDVQETLIHAISRERFGTPNVFMVGDVKQSIYKFR 456 Query: 424 GADIFTYMKARSEVHAH------YTLDTNWRSAPGMVNSVNKLFSQTD-----------D 466 A ++K L N+RS +++ +N++F Q D Sbjct: 457 LARPELFLKKYESYPREEGLYQTIELHQNFRSRDSVLSGINEVFYQIMTKGLGGILYTED 516 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 A + F P + + + ++ + + A++ +++ Sbjct: 517 AALHPGAVFEPTEETVGGKLELHLVNTGGIQLKQLEM--ESDALDYTSREMEARLIVSRM 574 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRD 585 ++ + + R D+ +L+RS A + L IP+ Y R Sbjct: 575 KELVNPETGLKIWDKKEKRYRTACYGDMVILLRSLSGFAEDFVNILMNEGIPA-YAERRT 633 Query: 586 SVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN----------NDE 635 F +E + +L L + P ++ L + L + M+G + D+ L D Sbjct: 634 GYFTAIEVETVLCFLSVIDNPMQDIPLAAVLKSPMVGASDEDLARLMAVFKRTAKKGQDR 693 Query: 636 HAWDVVV-----------------------EEFDGYRQIWRKRGVMPMLRALMSARNIAE 672 + + +E YR++ + +L + + Sbjct: 694 GIYGAWLYYLENCPEEEREEELYRKLALFFDELAEYRRMAGYLSIHELLYVIYENTGYYD 753 Query: 673 NLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLES 731 + A G+ R ++ + E T +R++ + + + L Sbjct: 754 YVAAMPAGDARQANLDMLVEKASAYEKTSYSGLFHFIRYIEKL---KKYDTDFGEAALAG 810 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA---FYHDRHSFEAVLDLNAAPESVD 788 D + V+I++IHKSKGLE+P+++L + ++ D A L+ Sbjct: 811 DGNTVRILSIHKSKGLEFPIIFLAGMGKKFNKQDLYGKILIDPDLGIATDYLDLDLRVKT 870 Query: 789 LAEAERLAEDL----------RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT------- 831 + + R+LYVA+TR+ + + ++ Sbjct: 871 STLKKNVLRRRLELEALGEELRVLYVAMTRAKEKLIMTGTDRYLDKKLERFSDIKRTAGQ 930 Query: 832 ------DVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVST 885 S L LL + + + + + D ++ + Sbjct: 931 IPFTILSTADSFLDWLLMSLSGKLSESALLSEAGVETGLMTVREYSVADLVGVEIEHQAE 990 Query: 886 AELNAKTL-----QRLPGDNWRV---TSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 +L+ + L R+ + + ++S I + V EE Sbjct: 991 KKLSKEELLNFDCSRIYDEAYAAGISAAFSYHYPHTADIGLHTKLSVSELKKQGQMVDEE 1050 Query: 938 PTLTPHQFPR-------------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFES 984 + P GA GT H E L+F V LE E Sbjct: 1051 ESTFLPTIPAFLMEENGKKEQGGGAFRGTAYHRALELLEFPAMKTLADVETALETFHREK 1110 Query: 985 QWEPV-----LTEWITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDT 1038 + I L +PL G +S ++ E +F + I + Sbjct: 1111 YMDEESLALLDAGIIWNFLSSPL---GRRMSAAQSKGLLYKEQQFVIGIPAREM------ 1161 Query: 1039 LIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAM 1098 + +++G ID L+DYK++ + + + Sbjct: 1162 -------------EVCDSGELVLIQGIIDAYMEEGDGLVLIDYKTDHVVKGHES------ 1202 Query: 1099 AAAMQAHRYDLQYQLYTLALHRYLRHRIADYD 1130 + RY +Q + Y AL + R+ + Sbjct: 1203 ---LLTERYGIQLEYYKRALEQMTGKRVLEKI 1231 >UniRef50_Q043G6 ATP-dependent helicase/nuclease subunit A n=25 Tax=Lactobacillus RepID=ADDA_LACGA Length = 1204 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 195/1242 (15%), Positives = 426/1242 (34%), Gaps = 182/1242 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M++ + D + L+ ASAG+GKT + L+ +L V LL Sbjct: 1 MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILS---------GTPVSSLL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 ++TFT+AA E++ RI+ I + L DN L Sbjct: 52 IITFTKAAAREMKERIKQKISD----QLEIEPDNQF-----------------LRSQLLD 90 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE---SLLRYQACADFWRRHCYPLPR 177 +D A + TI FC ++ + + + ++ DE LL+ +A + + + Sbjct: 91 VDTANISTIDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQ 150 Query: 178 EIAQVVFETWKGPQA--LLRDINRYLQGEAPVIKAPPPDD---------ETLASRHAQIV 226 + A + + D + L + Sbjct: 151 DFQDFYDNFSGDRDAEGARNLLLQLYNTATTEPNYEKFLDNLPTCYEVGDNLIRSNLWQQ 210 Query: 227 ARIDTVKQQWRDAVGELDALIESSGIDRRKFNR--SNQAKWIDKISAWAEEETNSYQLPE 284 + ++ D E++AL+ I+ + N + +++ ++ E E Sbjct: 211 QIKPLLLKEISDLKAEVEALLAEPEINSSDLVKVKENYDIFSNRLDSFWESLNTDQPYNE 270 Query: 285 SLEKFSQRFLEDRTKAGGE-------------TPRHPLFEAIDQLLAEPLSIRDLVITRA 331 E + + + L + + ++ A + + Sbjct: 271 IRANLMNCKFEKAVRKSKKWSDESIEVYQDSQDLKLDLNDQLKKIFASFFVVEEKEQIAV 330 Query: 332 LAE--------------IRETVAREKRRRGELGFDDMLSRLDSALRSESGEV--LAAAIR 375 L + + + ++ KR + + + DM S L +++ + Sbjct: 331 LQKSEKIVKTIVAAEKKLIQKFSQLKREQNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQ 390 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS 435 +F +IDE+QD + Q I + I + + L ++GD KQ+IY FR A ++ Sbjct: 391 EKFNEILIDEYQDVNALQENIIKAI-KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYH 449 Query: 436 EVH-----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV 490 L N+RS + +VN LF + + I K G+ Q Sbjct: 450 TYGKDNDSEKIILADNFRSTKRVTKTVNDLF----NPILTTNFGGIDYKKEGQLQFGASY 505 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQS-------TMAQVCAAQIRDWLQAGQRGEALLMNG 543 + + A + + + + Q+ A+I+ + + Sbjct: 506 YPSDLPTASEYIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQL--KAENFQVWDRRT 563 Query: 544 DDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RP+ SDI+++ R+R + QV ++P +++++ + F+T E ++ L+ + Sbjct: 564 QLKRPLEYSDIAIITRTRSDNLQVMQEFAKADLP-LFVTDAQNYFQTFELIMIMNYLRLI 622 Query: 604 MTPERENTLRSALATSMMGLNALDIETLNNDEHAWD--------------------VVVE 643 P+++ L + + + + ++ + A + ++ Sbjct: 623 DNPQQDIPLVAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEFLQ 682 Query: 644 EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLE 702 + + R + ++ ++ ++ E + G++R ++ + E + Sbjct: 683 QLETLRSFAATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFK 742 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI----- 757 + + ++ + + +Q + + + V+++TIH SKGLE+P+V++ + Sbjct: 743 GLYQFISFIERMR--KNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQ 800 Query: 758 -----TNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 NF + + +D + + L E+ R+LYV LTR+ Sbjct: 801 TRDLSGNFTISQNELGLTIKEKNYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRAQQK 860 Query: 813 CSLGVAPLVRRRGDKKGDTDV--------------HQSALGRLLQKGE--PQDAAGLRTC 856 L + KK +++ QS L L K E + +R Sbjct: 861 LILVASVNEIENKRKKWVSELDQKKDIIPLVKKINAQSPLDFLGPKLEQKHEFDQTIRDM 920 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK-----------TLQRLPGDNWRVTS 905 AL + D + D +P ++ D + + D + T+ Sbjct: 921 TSALEEQDKLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPFEDATKTTA 980 Query: 906 YSGLQQRGHGIAQDLMPRLD------VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLF 959 Y + + + L+ + + E PT Q GA GT +H + Sbjct: 981 YQSVSEIKKAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEIGTAMHLVL 1040 Query: 960 EDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQV 1019 + ++ D + ++++ + + + + + + LN +S + Sbjct: 1041 QYYNYEGNKDQENLDQEIDQLV---ELGKLNSLMVPHLSKEALNW--FVMSDFAK----- 1090 Query: 1020 EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLL 1079 EF+ + SQ +L+ + + P + ++ G +D F + L Sbjct: 1091 --EFWKQPDKLHRESQFSSLVNASELFNDFSDPSA----KVLVHGTVDGYFEAKDGLILF 1144 Query: 1080 DYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 DYK++++ T + A +Y Q +LY AL+ Sbjct: 1145 DYKTDFV-----DKTNEEQAIEKIKQKYTGQLRLYEQALNEM 1181 >UniRef50_B3WEJ1 ATP-dependent helicase/nuclease subunit A n=8 Tax=Lactobacillus RepID=ADDA_LACCB Length = 1234 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 202/1275 (15%), Positives = 403/1275 (31%), Gaps = 212/1275 (16%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + + L+ ASAG+GKT + ++ +L + +L Sbjct: 1 MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHA--------DITRML 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT AATAE+R +I++ + + E + + + L Sbjct: 53 IVTFTRAATAEMRTKIQTALKKALTERRHELS---------------GEDRRHLANQIAM 97 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 ++ A + T+ F +++ + + +L+ DE+ + + D R Y Sbjct: 98 VNAAKISTLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEA 157 Query: 179 --IAQVVFETWKGPQAL-LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 Q+ L+D+ L +A P E LA+ +A +Q Sbjct: 158 PAFEQLTANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQI 217 Query: 236 W------------------------------RDAVGELDALIESSGIDRRKFNRSNQAKW 265 W + +L L + ++ Sbjct: 218 WPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLETNAPTYDTVRSVLI 277 Query: 266 IDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD 325 + +AW+ + + ++ + K A +Q+ + Sbjct: 278 SHEFAAWSRISKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFALAAEQIGDLLREAQP 337 Query: 326 LV--ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES---GEVLAAAIRTRFPV 380 LV + + + + EK R + D+ L+ + G +A R F Sbjct: 338 LVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDE 397 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--- 437 M+DE+QD P Q + + P ++GD KQ+IY FR AD ++ Sbjct: 398 VMVDEYQDISPLQEALLAAVSTTTPGDR-FMVGDVKQSIYGFRLADPQLFIHKYQTFQDA 456 Query: 438 ------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR------------EIPFIPVK 479 L N+RS ++ N +FSQ D + + + Sbjct: 457 PTDPAAPERIILAENFRSTKNVLAFTNLIFSQIMDPEVGDLSYDNAAALRYGALDYGDAH 516 Query: 480 SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539 A K E + + D + Q+ A+I+ + + Sbjct: 517 PAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIATGQTQLVLAEIQRLINDPDA-QLW 575 Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599 + R + DI++L R + + ++ +P +++++ + F+T E ML L Sbjct: 576 DRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAAAGVP-LFVADTKNFFKTTELMVMLAL 634 Query: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA---------------------- 637 L+ + +++ L + L + ++GL+A + + Sbjct: 635 LKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLAAKQVPYYDAVTAFLQAEPKTPLAQR 694 Query: 638 ----WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693 + +R + R+ ++ +L A+ + + T GG +R ++ + + Sbjct: 695 THDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDTGFLDYVGGTPGGSQRQANLQALIDR 754 Query: 694 LQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 + + A + ++ +++ + +++ D V+++TIHKSKGLE+P+V Sbjct: 755 ARTYEAGGFKGLFAFIHFI--TLMQKQDQDLAMPAQVDPDNDAVKLMTIHKSKGLEFPVV 812 Query: 753 WLPFITNFRVQEQ------------AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLR 800 +L +L + + + LAE++R Sbjct: 813 FLMQANKHFNMRDQTGTAILTKQGIGIKWLDPETRVEYELPQYQAAKAARQNQTLAEEMR 872 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG-----------------RLLQ 843 LLYVALTR+ + A + + T +A L Sbjct: 873 LLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWAAAAEGEARVLAPQVRSGATSYLDW 932 Query: 844 KGEPQDAAGLRTCI--------------EALCDDDIAWQTAQTGDNQPWQVNDVSTAELN 889 G + E + D+ Q T + + + +L+ Sbjct: 933 IGPALIRHPQARGLAETTIKPALVGDETEFTIEIDVNPQVTPTATPEKVSDDSGTMVDLS 992 Query: 890 AKTLQRLPGDNWRVT----SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF 945 A + P T S S +++ + D + + Sbjct: 993 AWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDLVNADRFLGPKPPMRDLTAPAFLTE 1052 Query: 946 -PRG---ASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTE-----WITA 996 P G A+ GT H L + +D +P+ +R + + + + + Sbjct: 1053 TPSGISPAAIGTATHLLLQLVDLAKPITMASLRALRDQLTTKQVIAVDVAKHIDLTALIR 1112 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 + L L + E+ F + + + L + Sbjct: 1113 FFETDLG----RLLLAKPQQVHREVPFSMLLPADQVFEALA----------------DDP 1152 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 ++ G ID E L DYK++ A+ RY Q LY Sbjct: 1153 GEDVLIHGIIDGYVSDEQGVTLFDYKTDHNPNT-----------AVLVDRYRGQLNLYAQ 1201 Query: 1117 A---------LHRYL 1122 A LHRYL Sbjct: 1202 ALQDLQPKPVLHRYL 1216 >UniRef50_A6NVW3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVW3_9BACE Length = 1206 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 232/1244 (18%), Positives = 396/1244 (31%), Gaps = 205/1244 (16%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + L + L ++ LV+T+T+AA AELR RI Sbjct: 18 GALLVSAAAGSGKTRVLVERLLGRV--------EHEGLDIDRFLVITYTKAAAAELRSRI 69 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + RL D+ L + + +A + T+H FC ++ Sbjct: 70 VEELSQ----------------RLARNPTDRH-----LRRQQTLVYKAQISTVHSFCAQL 108 Query: 137 LNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYP--LPREIAQVVFETWKGPQA 192 L + + +L ++ L +A + R + A++V G Sbjct: 109 LRECGHMLDVNPDFRLCDEGEAGVLMLRALDEVMDRRYEDITPDSDFAKLVDTMSAGRDD 168 Query: 193 LL---------------RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 D +L + D ++ + W Sbjct: 169 SRLMQIVLDIRGRVQSHPDPAAWLDQQGAAFSLEGVTDAGETPWGKLLLEDAAAQARYWL 228 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS------- 290 + + + + I + A+ + + + S Sbjct: 229 SRMAGALEDC-ACDPNLDANYAPTISATIAGLQAFLDGAAQGWDAAAAALPISFPPAGRK 287 Query: 291 -----------QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEIRE 337 + + +R K E + LL++ ++ V + + + Sbjct: 288 KMTECPEAAERVKSVRNRCKKRLEKLAEGFSDDSAGLLSDMAAVYPAVRGLFALVKDFEA 347 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 A EK RRG L F D+ L E G LA R+ M+DE+QDT+ Q Sbjct: 348 AYAAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLAKQWSGRYDEIMVDEYQDTNAVQNA 407 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV----------HAHYTLDT 445 IF I Q L ++GD KQ+IY FR AD +++ L Sbjct: 408 IFSAIS--QDGRNLFMVGDVKQSIYRFRLADPTIFLEKYRTFTPYETAEEGEPRRIILSK 465 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLME 505 N+RS ++ N +F A+ + Sbjct: 466 NFRSRAQVLEGANFIFRGIMSRSFGEMDYTADEALYPGASYPEGADYAVELDALDLAAGG 525 Query: 506 GESCGVGDYQS----TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS- 560 G+ ++ A+ A +I++ G RP D+ +LVRS Sbjct: 526 GDDEDESGEKTPRDLLEARFLAKRIKELKDGGFPVS---DGEGGTRPAGYGDMVILVRSP 582 Query: 561 RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSM 620 AL +IP + D FET E L LLQ V P ++ L S L + + Sbjct: 583 NSVLHHYARALGERDIPWEADAGGD-YFETTEVSVALSLLQIVDNPRQDVPLISVLRSPV 641 Query: 621 MGLNALDIETLNNDEHAWD-----------------VVVEEFDGYRQIWRKRGVMPMLRA 663 G A + L D + E + R R +L Sbjct: 642 YGFTADRLAVLRAASPDTDFYAALVKGAEEGGVDCAAFLAELEDLRFRSGDRNSHQLLWQ 701 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL-ESEHALVRWLSQHILEPDSNA 722 + N+ A GE+R ++L + EL ++ + + +L++ A Sbjct: 702 IYDRTNLLGIFGAMDEGEKRQGNLLALCELARQFEAAGHKGLFGFLTYLTRLRDNGGKLA 761 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ----AFYHDRHSFEA-V 777 + Q R + V+I++IHKSKGLE+P+V L +T ++ +H + Sbjct: 762 APQAAR---EGGGVRILSIHKSKGLEFPIVLLSGLTRRLNRDDMQRPILFHPQLGVGPKR 818 Query: 778 LDLNAAPESVDLAEA--------ERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 LD E LA E +AE+LRLLYVA+TR+ L A +K Sbjct: 819 LDTERMIEYPTLARRAVARQLEYEMMAEELRLLYVAMTRAKEKLILSCALTRGAADLRKL 878 Query: 830 DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA-----------------WQTAQT 872 D A ++L + L + I W Sbjct: 879 AEDAEYPADPQVLSGCQSVGQWVLLPVLTRPDAVAIRRAADYPLPIAAAELGPDWDIRWV 938 Query: 873 GDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY--------------SGLQQRGHGIAQ 918 + Q + TA L+ + GD V ++ + Q +G + Q Sbjct: 939 DGSDLLQPPERKTAVLSENVEDKPVGDLTGVLTWKYPYAGDVEIPSKLTATQLKGRELDQ 998 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPR-----------GASPGTFLHSLFEDLDFTQP 967 + + P R A GT LH + + +DF + Sbjct: 999 EAGAEFPLPQGEPEEPAAVPAGKRSTLRRPRFAEEEFGLTPAQKGTALHLVMQYIDFERA 1058 Query: 968 VDPNWVREKLEL-----GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEME 1022 V+E++ Q E V I A Q+PL + + + + E + Sbjct: 1059 GTEEQVKEEIARLVAGAYITPEQGEAVNPAKIAAFFQSPLGREMM-----ESVSLRREFK 1113 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 F + + P + +L+G +D F ++D+K Sbjct: 1114 FSILVPAADYC------------------PGAGEGEQVLLQGVVDCCFETLEGITVVDFK 1155 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 ++ + +A Y Q Y+ AL R+ Sbjct: 1156 TDRVTRR---------TIQERAEEYRPQLTAYSRALEEMTGRRV 1190 >UniRef50_C4Z991 DNA helicase II n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z991_EUBR3 Length = 1220 Score = 616 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 217/1263 (17%), Positives = 417/1263 (33%), Gaps = 209/1263 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 + L+ A+AG+GKT + + + P+ ++ +LVVTFT+AA AE+R R Sbjct: 17 DRDILVSAAAGSGKTAVLVERIVNRICVDNP------PVDIDRMLVVTFTKAAAAEMRER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 + I L+ + L + A + TI FC Sbjct: 71 VSCAIDSLKEQKPDDEN---------------------LQRQSTLVHNALITTIDSFCLF 109 Query: 136 MLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCY-PLPREIAQVVFETWKGP-Q 191 ++ N + + + ++ + L + A A + + ++ KG Sbjct: 110 VVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEAFINLIDTYSKGRND 169 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHA----------QIVARIDT-----VKQQW 236 + +R + + +A P L + +I+ I +++ Sbjct: 170 SAVRQMVEDIYYKAGSSSWPRKWMNRLLRLYDIKSAKQLEDSEIIKEIVDYSRVLLEEAV 229 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA---------------WAEEETNSYQ 281 ++ D + G+++ S D ++ + Sbjct: 230 QELTMAKDLASATPGLEKYALTLSEDIALFDGMADVTGYVGMQEFLNKISFGRIAAIRKF 289 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAEIRET 338 + +K + + D K + + F +L+ E L + + R E + Sbjct: 290 DGDEKKKERVKSMRDAAKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSLEFYDA 349 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSES---GEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 + K ++ F D+ L E A F MIDE+QD++ Q Sbjct: 350 MEAVKIKKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSNQVQED 409 Query: 396 IFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYTLDTNWR 448 I I + ++GD KQ+IY FR A +M+ + H L N+R Sbjct: 410 ILTAISREHQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSDDSAHQRIDLHKNFR 469 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES 508 S +++ N +F + A ++ + K +P + + + E Sbjct: 470 SRNEVLDFTNDIFYKIMAA----DLGNVQYDDDAALYPGASYPKETMRPELLLVDYKDED 525 Query: 509 CGV------GDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-R 561 GD A + A +IR ++ G R V+ DI +L RS Sbjct: 526 LSEIIEDEDGDKVQIEALLIANRIRSLMENG---MVTDKKTGQLRAVQYRDIVILSRSVA 582 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 V L +IP+ ++ + F + E Q +L +L+ + P ++ + + LA+ ++ Sbjct: 583 TWGNTVAAVLKDCDIPA-HVESNTGYFSSYEIQVILSMLRILDNPLQDIPMAAVLASPIV 641 Query: 622 GLNALDIETLNN---------------------DEHAWDVVVEEFDGYRQIWRKRGVMPM 660 G++ ++ + + ++ F+ R + + Sbjct: 642 GMDDEELAQIRSAFKGVSFAQAALSAMAGEDGYEDEKLKAFALVFERLRGAVADTPIHEL 701 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHILEPD 719 L ++ A G+RR +I + E T + VR++ I + Sbjct: 702 LYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEKTSYKGLFHFVRYID--IQQKY 759 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFE 775 + + +V+I+TIHKSKGLE+P+V++ + + H++ Sbjct: 760 EIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKSFNTQDTKSDLVIHEKLGLG 819 Query: 776 AVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGD 826 V E + E L E+LR+LYVALTR+ L ++ Sbjct: 820 LVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALTRAKEKIILTGGLSNAQKSF 879 Query: 827 KKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDV--- 883 +K +V+ + + G+ + A I T T D + Sbjct: 880 EKYRGNVNANQP---ISFGQREGAGCYLDWIIPAMLSYPDKYTVSTVDATEFAARTAMDM 936 Query: 884 ---------------STAELNAKTLQRLPGDNWRVTS-------YSGLQQRGHGIAQDLM 921 + E AK L + S YS + + H + Sbjct: 937 AANDISKAQLIGHISAADETKAKELAEEFDFEYVYASDITKKSKYS-VSELKHDSMVEKY 995 Query: 922 PRLDVDAAGVASVVEEPTLTPHQFPR----------------------GASPGTFLHSLF 959 + +A ++EE F R GA GT +H + Sbjct: 996 DSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKEPKNAAGVNQGALRGTAVHRVM 1055 Query: 960 EDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQV 1019 E LDF D + + + +L + + + + L R K + Sbjct: 1056 ECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLEKRL-------ITDDMYRL----TRPKLI 1104 Query: 1020 EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLL 1079 E +F +A+++ ++ D +++ +++G ID+ + + LL Sbjct: 1105 E-QFI----SSDVAARMAQADKRGDLYKEKPFVMDY--EGVLVQGIIDVFWLENDKIVLL 1157 Query: 1080 DYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVI 1139 DYK++ + RY Q +LY AL R + I Sbjct: 1158 DYKTDRVNAAKE-----------LIDRYSTQLKLYADALGRIFSTDGKSIQADERL---I 1203 Query: 1140 YLF 1142 Y F Sbjct: 1204 YSF 1206 >UniRef50_UPI0001BC38AF DNA helicase II / ATP-dependent DNA helicase PcrA n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC38AF Length = 1174 Score = 616 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 201/1245 (16%), Positives = 403/1245 (32%), Gaps = 187/1245 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS+ L+ A+AG+GKT + + + P+ ++ ++ Sbjct: 1 MSNWTSEQQTAIYERNCNLLVSAAAGSGKTAVLVERIVSRVFDE------RNPVDIDRIV 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT++A E++ R+ ++ A + + Sbjct: 55 IVTFTKSAAGEMKERLTKRFEDILKADCGN---------------------RRAIRQIAL 93 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPRE 178 ++ A + TI FC +L G ++ + + L++ + Sbjct: 94 INHAKITTIDSFCSYILKNYYNTIGYEPSYRIADKGETELIKEDVYNELLEERLKNNDEN 153 Query: 179 IAQVVFETWKGPQ-ALLRDINRYLQGEAPVIKAPPPDDETLASRH--------------A 223 + + +G A DI + L + P A + Sbjct: 154 LITAINSLTQGKSIAPFFDIIKKLYDASESHPWPKEWLSDCAKLYDIDNEEELNASPVIE 213 Query: 224 QIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDK------ISAWAEEET 277 + + I + + + L L E G+ + + + + + Sbjct: 214 YLFSYIKELLNEMSQSYDNLIELCEDPGLSGVRDVLCDDKSKVTRLLECNSFTELNNNAD 273 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAID--------QLLAEPLSIRDL--V 327 +++ K + + L D A + + + E ID ++ E +R Sbjct: 274 KNFRTKPRAGKGTDKELSDYITAERNSLKKEITEIIDLYCCYPYEDIIDEVACVRTSITA 333 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV-----LAAAIRTRFPVAM 382 + E + K R F D+ R L S+ G+ +A + + Sbjct: 334 VVDFTTEFADRYREAKEERQIAEFSDVAHRALEILVSKEGKTEKYTHVADELSELYDEIY 393 Query: 383 IDEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEV---- 437 IDE+QD++ Q +I + + + ++GD KQ+IY FR A ++ + Sbjct: 394 IDEYQDSNYVQEKILNAVSRCRFGCNNIFMVGDVKQSIYRFRMARPEIFIDKYNTYTEEQ 453 Query: 438 --HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGET 495 L N+RS ++NSVN +F + + I + A N + T Sbjct: 454 SPERKIELHKNFRSTVNVINSVNDIFRRIMKKSVG-NIEYND--DAALNYGGNIKDEINT 510 Query: 496 QPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDIS 555 + M++ E + A++ A +I++ + + + D Sbjct: 511 DTDICMYVKESDDYNDDSKGIINAEIAAMRIKEIMAENEE-------------LTYKDFV 557 Query: 556 VLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 +L+RS ++A + D L + IP+ Y S F E + ++ +L+ + +E L + Sbjct: 558 ILLRSGKDAGPEYVDTLGNMGIPADYAS-TTGYFSAYEVRLIIDVLKVIDNERQEIPLLA 616 Query: 615 ALATSMMGLNALDIETLNNDEHA---WDVVVEE-----------------FDGYRQIWRK 654 + + G A ++ + + +D + E YR+ Sbjct: 617 VMKSYFAGFTANEMALIKGNRRKKNYYDCLCEFSKGDGETAKKCRKFMNFIGEYRKKAGV 676 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHI-SELLQEAGTQLESEHALVRWLSQ 713 + ++ L+ + + + G RR +I + + T VR++ + Sbjct: 677 MTIRELVSELIYSTGYYDYVGFLLNGSRRKMNINMFILQAEKFEKTSFSGLFNFVRYIDK 736 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--FYHDR 771 + +D + V+I+TIH+SKGL++P+V L +E Sbjct: 737 IR--NYDVDFGEAGNAGNDNNYVRIMTIHQSKGLQFPVVILGNSDKRFNEEDLKSKIIID 794 Query: 772 HSFEAVLDLNAAPESVDLA-----------EAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 F +D E E E++RLLYVALTR+V + Sbjct: 795 EDFGISMDYVDLKSRRKQKFLFKEIMKKKYEREGTGEEIRLLYVALTRAVQKLVVTGVVS 854 Query: 821 VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD----DDIAWQTAQTGDNQ 876 ++ ++ +D+ +S + G + + +++ + I + DN Sbjct: 855 SKKY--EEFTSDIDRSIIDMKFILGNKNYISLILGALQSDELCGKYNYICYDNELLTDNV 912 Query: 877 PWQVNDVSTA--ELNAKTLQRLPGDNW------------------RVTSYSGLQQRGHGI 916 V + T EL + S S ++ Sbjct: 913 KDAVKEDLTDINELFRRAFSGRKDTEQVKNTVEYIYPHKEIKNLKSKYSVSEIKHMSMEE 972 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREK 976 +D + V A V + +G GT H FE L++ D N + E Sbjct: 973 NEDEASK--VIAPERTKAVPRFRKGVDEEVKGTLRGTAYHRFFEILNYDCCKDYNSIEEY 1030 Query: 977 LELGGFESQWEPVLTEWI-----TAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 L+ + I LQ L + S E F + + + Sbjct: 1031 LKTSVAAGKISEEYAGLINLKRFEEFLQTDLGKRMG--SAYKKGLLFREQPFIMELGADM 1088 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 I + + +++G +D F E + Y++DYK++ + + + Sbjct: 1089 IDKEYP------------------SDEKILVQGIVDAFFFEEDKVYIVDYKTDRVEQGKA 1130 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 RY Q +LY + R Y Y Sbjct: 1131 G-------EKALVERYHKQLELYADTISRVTGKETGGCYIYSTCL 1168 >UniRef50_A3ETY5 Putative exodeoxyribonuclease V, beta subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY5_9BACT Length = 1101 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 287/1200 (23%), Positives = 467/1200 (38%), Gaps = 139/1200 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ +ET L LPL+G IEASAGTGKT T+A LYL ++L ++ E +L Sbjct: 1 MTGFSETPLYLGLPLEGIHAIEASAGTGKTTTLALLYLSVILS---------GVSPENIL 51 Query: 61 VVTFTEAATAELRGRIRSNI---HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLA 117 VVTFT AA ++R RI+ + + R E + L L D L A Sbjct: 52 VVTFTRAAAQDVRERIQKLLEDVRQWRSGSKAEILPD-LRAYLETLETDPLLLDMRLREA 110 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 D A + TIH FCQ +L+ +F G L+ ++ + Y++ WR Y Sbjct: 111 LVVFDRAPIQTIHSFCQSLLSQMSFLLGAPANLVLVPEDQPVLYESSVRLWRSLFYGRDS 170 Query: 178 EIAQVVFETW-KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 +A+ W GP +R A ET +++ + +Q + Sbjct: 171 RLAEFFLSVWEDGPGGWVRMFR--------TASARRGSPETCFRPVEEVMEQYRARRQTF 222 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 R+A+G + + + + + ++P + L + Sbjct: 223 REALGIV-----------------FPERSREVLPHRVRDLLGDREIPALGLSYDDADLGE 265 Query: 297 RTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLS 356 G + R L + IR + RE+ RG +DD++ Sbjct: 266 TFPPGEDALRELLGRTLQSARDLQEVIRSS-FRDLAGTWKHRELREREVRGIATYDDLIL 324 Query: 357 RLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA-LLLIGDP 415 R+ +L ES +A +R RFPVA +DE QDT Q IF RI+ + L IGDP Sbjct: 325 RVADSLERES---VAQRLRDRFPVAFVDESQDTSRDQSGIFARIYRDPRPGSALFWIGDP 381 Query: 416 KQAIYAFRGADIFTYMKARSEVHAH--------YTLDTNWRSAPGMVNSVNKLFSQTDDA 467 KQ+IY FRGAD+ Y++ + + L N+RS+PG++++VN+LF + Sbjct: 382 KQSIYRFRGADVGAYLEFSRQAKSSPASPASPPLRLSVNYRSSPGVLHAVNRLFGRHPSP 441 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIR 527 F+ + + P + + G D A+V A ++ Sbjct: 442 FLLEGVSYHPSSPVSGRKPELVDPAFSGS---CFLVYPGRGPK--DKLDDFARVTADEVD 496 Query: 528 DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSV 587 L + RP+ ASDI+VLV + +V IP S SV Sbjct: 497 RLLSG--------KILLNDRPLAASDIAVLVPKNDDGERVAGFFRERGIPYNSASPG-SV 547 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDG 647 F T EA E+ +L A+++P R L AL T + G +A I+ L D V E F Sbjct: 548 FHTREADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRIDGLVRDPEQARPVQEVFLE 607 Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHAL 707 ++WR G+ R L + LL+ +R I + + +++A Q + Sbjct: 608 ASRLWRTHGIRAAFRELFFRMGVWTRLLSAGRTRQR---IDRLVDRIEKAAGQFPTPPDQ 664 Query: 708 VRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF--ITNFRVQEQ 765 R+ S+ L P+ + + + E V I+T+HKSKGLE+P+V++PF R +E+ Sbjct: 665 HRFFSRARLSPEGESHEETVGGEPGTG-VHILTVHKSKGLEFPVVFVPFGIPEKTRKEEE 723 Query: 766 AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 AF + +E LRLLYVALTR+ L +++ Sbjct: 724 AFREEDGEDS------------------DQSESLRLLYVALTRARERVYLFCPLNRKKQS 765 Query: 826 DKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD--DDIAWQTAQTGDNQPWQVNDV 883 + + GR + + +R +E D +++ + + Sbjct: 766 ALDHLLETDRHLEGRREKTVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKTPK 825 Query: 884 ST----AELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPT 939 E+ ++L RVTS++ + RG + + Sbjct: 826 EQGKVEDEIVVRSLAHPLPVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDL--SGN 883 Query: 940 LTPHQFPRGASPGTFLHSLFE-------------DLDFTQPVDPNWVREKLELGGFESQ- 985 L G + G F+H + E + ++ W+R + Sbjct: 884 LVERPGAAGRAFGVFVHGVLEEAGKWIVRYKKAKKISPSRADVREWLRSSFPSRPSDEVG 943 Query: 986 -WEPVLTEWITAVLQAPL-NETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQF 1043 W E L PL +G+ L+ L + E F L + + A + Sbjct: 944 GWTASALELAEQGLCTPLIPISGLPLADLLDDRSRFEEPFLLRLPDEENAGE-------- 995 Query: 1044 DPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQ 1103 +V L+G ID+V YL+DYK+N+L + + Y +++ + Sbjct: 996 ------------REVASHLRGVIDVVVWSGKTVYLIDYKTNFLTAEGNPYAPESLERVLS 1043 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAG 1163 HRYDLQ ++Y+ A R+L + FGG ++LFLRG+ G P Sbjct: 1044 DHRYDLQARIYSGACRRHLALTGNE----GEFGGFLFLFLRGM-GRERGSGTVLWTPPKE 1098 >UniRef50_D0BK91 ATP-dependent nuclease subunit A n=2 Tax=Granulicatella RepID=D0BK91_9LACT Length = 1244 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 203/1269 (15%), Positives = 415/1269 (32%), Gaps = 227/1269 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + + + + ++ LL+VTFTEAA E++ R+R Sbjct: 25 NLLVSASAGSGKTKVLVDRIMGYI---------EDGVNIDSLLIVTFTEAAAKEMKERLR 75 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 +N+ + T + + A + TIH FC +++ Sbjct: 76 TNLEKAITKETDITKKHMYI------------------KQLSLLPNATISTIHSFCMKVI 117 Query: 138 NLNAFESGMLFEQQLIED---------------ESLLRYQACADFWRRHCYPL--PREIA 180 + S + L+ + + LL + D R+ Sbjct: 118 RRYFYLSQLDPVFSLLNEVEGTLLKEKVWRNIQDELLEEHSWMDGLMRYFSSDRNDDGFT 177 Query: 181 QVVFETWK------GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 +V++ + P+ + + + + + P D Q I + Sbjct: 178 TLVYQLYDFSRSKPNPKQWISSLADLYETKDEYGEIPIIKD--------QFAPYIVEELK 229 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDK-ISAWAEEETNSYQLPESLEKFSQ-- 291 A EL L E +G ++ K A+ I + +A+A + F + Sbjct: 230 YLVSAYDELIKLAEVTGFEKCKDVVEADAQKIQEVYTAFASGNYTAAYTLAQGVSFDRFP 289 Query: 292 -----------------RFLEDRTKAGGET--PRHPLFEAIDQLLAEP--LSIRDLVITR 330 + D K E FE+ + + + L +++ Sbjct: 290 TVPKKDETTDREAVQAIKRKRDSLKKHWEDQVLATAFFESPEVQMKHLRNIYPMMLHLSQ 349 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAA--IRTRFPVAMIDEFQD 388 + + E EK+ ++ F D+ S L +E VL A + F +IDE+QD Sbjct: 350 VVLKFYEAFQLEKKTSNKIDFSDLEHDTLSILSTEKNGVLIAKKYYKELFTEVLIDEYQD 409 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTL 443 + Q I + L ++GD KQ+IYAFR AD + L Sbjct: 410 VNRVQEAILTSVARE---NNLFMVGDVKQSIYAFRLADPSLFRDKYEAYADENGGKRIIL 466 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS +++ N +F Q D E+ I + + + +T + ++ Sbjct: 467 AENFRSRDQVLSFTNLIFRQIMD----HELGQIDYDDSAALKTGNLNYSDDTDKFSECYI 522 Query: 504 MEGES--------------CGVGDYQSTMAQVCAAQIRDWLQA--GQRGEALLMNGDDAR 547 ++ + + S A +I++ + E R Sbjct: 523 IQNANLEEEEEESSGLESESPIDSSASAEVHFIAGKIKELMANQFEIMHEESTKENPKKR 582 Query: 548 PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607 P++ DI +L ++ + + T +IP V + F+ E M+ L+ + P Sbjct: 583 PIQYKDIVILAPTKANNGLIEEIFTQYQIP-VLVQKNLQYFKRTEIAIMMSALKIIDNPT 641 Query: 608 RENTLRSALATSMMGLNALDIETLNND--------------------------------- 634 ++ S L + ++GL+ + + + + Sbjct: 642 QDIPFVSVLRSGIVGLDEIALAHIRKNNKSCSFYEACVHFVEHFTLEEVNYYDSSQQQQL 701 Query: 635 EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 + +++ + +R I + + ++ + N + + G++R+ ++ + + Sbjct: 702 KERIKSFLDQLESWRDIANHQSISTLIWQIYMDTNYLTYVHGQSVGQQRVLNLHALYKYA 761 Query: 695 -QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 + + VR++ Q + + ++ ++ V+++TIH SKGLEYP+V+ Sbjct: 762 KDFEDSSFKGLRNFVRFIQQMQHKK--QDLEEPTQISDEEDAVRVMTIHASKGLEYPVVF 819 Query: 754 LPFITNFRVQEQAF--YHDRHSFEAVLDLNAAPESVD-----------LAEAERLAEDLR 800 L Q+ + PE + + + L+E++R Sbjct: 820 LMNAGKKFNQQDIRQQAIRSDELGVGVKYLQLPERIQWTTIPYVMAYKAEKNKLLSEEMR 879 Query: 801 LLYVALTRSVWHCSLGVAPLVRRRGDKKGD------------------TDVHQSALGRLL 842 LYVA+TR+ + + + ++ + L + Sbjct: 880 KLYVAMTRAREKLIIVGSLKDFDKFKEEHSMIEDIDDETLPYSLRYHVDNYLTWILMATM 939 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAW-QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901 +K E E + + + W Q +T + K L L D Sbjct: 940 RKQEKVSFHQEVIDFEQIKQNALNWIQETETTSINEVEWLQKQVEGKPVKNLSNLLEDLK 999 Query: 902 RVTSY------------SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-- 947 + Y S +++ +P+L+ V++ + + Sbjct: 1000 QTYPYLLASTTASYQSVSEIKRMNEEPDVKQLPQLEEQTQETEKNVQQYVYLTSELAKPS 1059 Query: 948 ---------GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVL 998 A G+ LH L + LD T+ + P +++E ++ E + I Sbjct: 1060 FIESKQKVSAAERGSGLHLLMQKLDLTKEITPEFIQETIQQLVETQFLEKEVAAVIP--- 1116 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 + + EF I E + L + Sbjct: 1117 -------------VDQVYHFFQSEFGQWIQEHQALLNREQAFSHVVTAKRIFKHLPDNED 1163 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 ++ G ID + L DYK++ + TQ+ + + +Y Q LY AL Sbjct: 1164 SMLIHGIIDGFVELDDEIILFDYKTDHVVP-----TQKGIQKVV--DKYKQQLNLYAEAL 1216 Query: 1119 HRYLRHRIA 1127 + ++ Sbjct: 1217 ETSYQKKVT 1225 >UniRef50_Q04GY7 ATP-dependent helicase/nuclease subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=ADDA_OENOB Length = 1186 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 199/1233 (16%), Positives = 405/1233 (32%), Gaps = 187/1233 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + L+ ASAG+GKT + + LL +++ L Sbjct: 1 MNFSKNQRAVIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGK---------SIDRFL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 + TFT+AA E++ R+ I +++ Q + L Sbjct: 52 ISTFTDAAALEMKNRLEKRIR-------------------AGITEEEGQLKRHLQEQLLL 92 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL---LRYQACADFWRRHCYPL-- 175 ++ AA+ T+ F R++ G+ +++ D++ L D + + Sbjct: 93 LNSAAIGTLDSFSLRIIERYYSVIGLDPRYRMLADQTEKNLLVKDVLDDTFDEMYHDEKF 152 Query: 176 ------------PREIAQVV------FETWKGPQALLRDINRYLQGEAPVIKAPPPDDET 217 +++ +V ET P L I + + K + Sbjct: 153 LRLLNNFSSASHDQDLKNLVIKLNTMAETRANPDFWLDSIAENYRLSGGLTKGSFWKELL 212 Query: 218 LASRHAQIVARIDTVKQQ------WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA 271 + A + + D + L ++ G+ R +Q W Sbjct: 213 QPQIFNRASAALYQLLSAKKGVEDLEDYHSYIAYLADAVGLVRGFIEVCSQNNWQQMSDY 272 Query: 272 W--------AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSI 323 + A + + Q + + + + ++++ + LF Q L Sbjct: 273 FVNNSWPKSARKSGKNEQEADYFDNWIKPWIKEAKDSYRSIESDFLFLNESQWLDISEKS 332 Query: 324 RDLV--ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVA 381 +V + R R+ A +KR L F D L+++ + I++ F Sbjct: 333 LGVVEELIRLTKVFRKKFALKKRELSLLDFSDGEQFAYQILQNQ---TVREEIQSLFDEV 389 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV---- 437 ++DE+QD + Q I + + ++GD KQ+IY FR AD + + Sbjct: 390 LVDEYQDINDLQENILTDVSNGS---NFFMVGDLKQSIYGFRQADPVNFSNKYIQYKEGN 446 Query: 438 -HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ 496 L N+RS + + N +F + D + V+ N+ K Sbjct: 447 GGELIELSENYRSQHNVADFTNAVFRKLMDRKLGGIDYRGDVELKAANRDYPKNLKNVAD 506 Query: 497 PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 ++ E + + ++ AA+I+ + + RP+ DI++ Sbjct: 507 ISIFDIDEESNEDEDFNSRQAQIEIIAAKIQALVGQSE---IYDRQSGKMRPLVYRDITI 563 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L RS ++ IP + + + E +L L+ + P ++ L + L Sbjct: 564 LERSHSWENDIQTIFKKYHIPINVAAG--NFLQEFEVSIVLSFLKIIDNPHQDIPLVAVL 621 Query: 617 ATSMMGLNALDIETLNNDEHAWD----------------------VVVEEFDGYRQIWRK 654 + + GL+ + + + D + + + YR+I Sbjct: 622 RSPIYGLDENQLAEIRTADMKHDYFSALQAYAKTGQDLDLQKKMAAFLVQLENYREIAAD 681 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEHALVRWLSQ 713 ++ ++ + + N E + GG +R ++ + + Q+ + +R++ Q Sbjct: 682 NQIVDLIWQIYNDTNWPEYVAGMVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQ 741 Query: 714 HILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF---RVQEQAFYHD 770 + DS Q ++ + V ++TIH +KGLE+P+V+L + R A D Sbjct: 742 LM---DSVEDFAQAPVDMGQEAVSVMTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVD 798 Query: 771 RHSFEAV----------LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 + + + + + + AE++RLLYVALTR+ L + Sbjct: 799 FDNGIGIDFVHPTSQVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLVGSSK 858 Query: 821 VRRRGDKKGDTDVH-----------------QSALGRLLQK----GEPQDAAGLRTCIEA 859 T V QS +G L + Sbjct: 859 RMSDLIHNWGTPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLT 918 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVSTAE--LNAKTLQRLPGDNW---------RVTSYSG 908 + QT ++ E ++ +++ N+ + S Sbjct: 919 FKIESYNAQTIPKIVENKAKIKQNEQEETGIDLARSKKILDYNYPYKIESELAAYHNVSE 978 Query: 909 LQQRGHGIAQDLMPRLDVDAAGVASVVEEPTL---TPHQFPRGASPGTFLHSLFEDLDFT 965 L++ LMP ++ D + + EP + GT H + E +D+ Sbjct: 979 LKRVFEDPDSLLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHLILEKIDWK 1038 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 + +D +++++ ++ + + + +L EF Sbjct: 1039 KEIDKDYLQQLIKENIPDQKTRQSI--------------------ELDRIIWFANSEFGT 1078 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 I + + + P +E ++ G ID F +G L DYK++ Sbjct: 1079 EIKKSASTLKREQTFAMLIPAKQIYQQVETSDP-VLVHGIIDGYFISDGLITLFDYKTDR 1137 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 G+ Y + RY Q LY AL Sbjct: 1138 FGK---DYVSK------LKERYSGQLNLYAAAL 1161 >UniRef50_C4G8V9 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G8V9_9FIRM Length = 1315 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 229/1335 (17%), Positives = 438/1335 (32%), Gaps = 231/1335 (17%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 E +R + L+ A+AG+GKT + +R+L PL V++LLVV Sbjct: 6 WTPEQRQVIRA-RDRDLLVSAAAGSGKTAVLVERIIRMLTD------PDAPLDVDQLLVV 58 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFT AA E++ +IR I E + + LL L + Sbjct: 59 TFTRAAAHEMKEKIRRAIQEAVNEARSQLDPTDRQKALLS----------HLQRQLTLVH 108 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIA 180 A + TI FC ++ + E + + ++ E+ L+ + H + Sbjct: 109 SAQITTIDSFCAYVVRNHFNEIDLEPDFRIAEEGEIRLIAQEVMDQLMDEHYEMEDQAFI 168 Query: 181 QVVFETW-KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD- 238 +V +G L D+ + G A P + + + ++ + D ++ W Sbjct: 169 DLVDLYARRGKDDALADMLMSIYGTANADPWPMEWLDRCSDTY-RVKSPEDMLRMPWVQG 227 Query: 239 -------AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQ 291 + L+E + R + + I+ A+ E + S Sbjct: 228 LTNRIKSQAEACEDLLEEAMQLSRLPGGPHYQEAIEADLAYCESIREAEDFSRIALILSG 287 Query: 292 ----------RFLEDRTKAGGETPRHPLFEAIDQLLAEP-------------LSIRDLVI 328 + +++ KA + R + +QL + ++ + Sbjct: 288 IQWKKLSGKRKGVDEELKARAKDLRDQSKKVFEQLRRDYSGDPAAEFDKLSVMAPYLKTL 347 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-----VLAAAIRTRFPVAMI 383 E + KR++ + F D+ LR + A + ++ MI Sbjct: 348 LDLTKEYAVSFEACKRKKNVVDFADLEHYALRILRDPADPAHPMTETAENLCRQYAEVMI 407 Query: 384 DEFQDTDPQQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA--- 439 DE+QD++ Q I + Q E ++GD KQ+IY+FR A + Sbjct: 408 DEYQDSNNLQEAILSAVAGSDQGEHKTFMVGDVKQSIYSFRQARPELFNSKLKSYDKLTA 467 Query: 440 ---------HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK----SAGKNQA 486 L N+RS +++ N +F + + V + A Sbjct: 468 ESQKTVRSQRIDLSRNFRSRQEILDFANHIFYRVMQEDLGGVAYHEDVALHLGADYPATA 527 Query: 487 LRFVFKGETQPAMKMWLMEGE-----SCGVGDYQSTMAQVCAAQIRDWLQAGQ--RGEAL 539 K E + ++ L E + + G+ D A + +I+ ++ + EA Sbjct: 528 AAVSGKAEDPYSAELILCEQDMEALEALGLEDKAELEANMIGERIQRLMKEQKVVNEEAE 587 Query: 540 LMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 + + R +R DI +L+RS D LT + IP+ S + F+T+E L Sbjct: 588 EGDQNPLRRLRYQDIVILLRSPGSNGQVFVDRLTQMGIPAHITSGK-GYFDTVEVSRFLA 646 Query: 599 LLQAVMTPERENTLRSALATSMMG--LNALDIETLN-------------------NDEHA 637 LL + + + +L + + + + G + + + Sbjct: 647 LLSLLNNRQDDRSLAAVMLSHVFGEPFTEDQLYLIRSAYPRLTTGQDRGDESRDIQNACL 706 Query: 638 WDVV---------------------------------------VEEFDGYRQIWRKRGVM 658 W+ + + + R + Sbjct: 707 WESLEAMESYSRGILAGEKEDSDQRPGHLLELDTSLPQKVLDFCDRLEAARARIPYTPIH 766 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHIS-ELLQEAGTQLESEHALVRWLSQHILE 717 ++ L+ + A GG+ R ++L + E ++ G+ + + ++ + L Sbjct: 767 RLIEELLDETAYLNYVTALPGGQIRRANLLKLVDEAIRFEGSSYRGLYRFMNYIQK--LR 824 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ------------ 765 + S + + V+I +IHKSKGL+YP+V++ + Sbjct: 825 TYNVDLSAAELIGEEDDAVRITSIHKSKGLQYPVVFVCGLGQKFNMRDSSGDMLIEMDLG 884 Query: 766 -AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRR- 823 + + + D D + LAE++R+LYVALTR+ L + + Sbjct: 885 ISLRTRNAAKRTMSDSLFHRAVSDQRKENSLAEEMRVLYVALTRAKEKLILSGSLSRLKE 944 Query: 824 -------------------RGDKKGDTDVHQSALGRLLQKGE---------PQDAAGLRT 855 + G + L L GE G T Sbjct: 945 RLDQEWEATRGKGDGYVLPYHRRMGAKNYLDWILPSLASYGELYRQSIHCYIPGEDGALT 1004 Query: 856 CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW---------RVTSY 906 + + T N + D+ E + L+R+ + S Sbjct: 1005 WGQEQAESPGRADCDGTPANHLEDLKDLPGTEALLQYLRRVFAYRYPYAASQNYKSKYSV 1064 Query: 907 SGLQQR------GHGIAQDLMPRLDVDAAGVA---SVVEEPTLTPHQFPRGASPGTFLHS 957 S ++ G Q++ +D D +V EE + GA GT +H Sbjct: 1065 SEIKHASMQLGMGEKEGQEIFRPVDEDRYVPEFARAVTEERGQNNKKIHPGALRGTAMHR 1124 Query: 958 LFEDLDFTQPVDPNWVREKLELGGFESQWEP-----VLTEWITAVLQAPLNETGVSLSQL 1012 + E LDF + + + E+L+ + + VL + I + L+ + + Sbjct: 1125 VMECLDFAREDYADSLGEQLDQMRADGRLSEEELGLVLPDRIQSFLKQDMADRIHR--SA 1182 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 E F + + I + S + +++G IDL F Sbjct: 1183 VEGRLYREQPFVMGLRPKEIDRLMGRQPSAASKESET-DAAAVGENMILVQGIIDLFFIE 1241 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY--- 1129 +G+ +LLDYK++ + ++S RY Q LY A+ R + Sbjct: 1242 DGKIFLLDYKTDRVQDESE-----------LVGRYQAQLLLYAQAVLRAMSSEEKPICLG 1290 Query: 1130 ---DYEHHFGGVIYL 1141 Y G ++YL Sbjct: 1291 GVCMYSFALGRLVYL 1305 >UniRef50_A7VJ43 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VJ43_9CLOT Length = 1247 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 193/1280 (15%), Positives = 427/1280 (33%), Gaps = 215/1280 (16%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGS-AAFPRPLTVEELLVVTFTEAATAELRG 74 G L+ A+AG+GKT + L +++G+ + ++E+LVVTFT AA A+++ Sbjct: 17 HGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEVLVVTFTRAAAAQMKE 76 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 +I + + D+P E ++++ + A + TI FC Sbjct: 77 KIADKLEQAA-------EDHPEDEHIVKQ--------------LSLLPRADIMTIDSFCL 115 Query: 135 RMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETW-KGPQ 191 ++ G+ + ++ L++ + + E +V K Sbjct: 116 GIVKDYFQMIGIDSSFDIADNAEMDLIKNDILDEVLEQKYQEASDEFIGLVDSFARKESD 175 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHA-----------QIVARIDTVKQQWRDAV 240 +R++ + A P + + V A+ Sbjct: 176 EKIRELVYQIYRVASGYPKPERWINEAETALEVSTKEELYTLKWYRDYMQIVADTLDSAI 235 Query: 241 GELDALIESSGIDRRKFNRSNQAKW-IDKISAWAEEETNSYQLPESLEKFSQRFLEDRTK 299 G+ + +E +G + ++ + + E + + + + Sbjct: 236 GQAEQCLEIAGEADGPAGYDPIIRLDLELLRNLRQAEDMDEAYKRVSKFSNLKRIAACDP 295 Query: 300 AGGETPR-------------HPLFEAIDQLLAEPLSIR--DLVITRALAEIRETVAREKR 344 + + LF +L+E ++ + E + EK Sbjct: 296 EKQQYVKTTMQTYRGSVKDMMALFRPTGVILSECAMMKGPLSALLSLTRSYMERLKEEKL 355 Query: 345 RRGELGFDDMLSRLDSAL---RSESG----EVLAAAIRTRFPVAMIDEFQDTDPQQYRIF 397 R F D+ L E+G + R+ +IDE+QD++ Q I Sbjct: 356 DRNLYEFRDISEFAYDILCAGTDENGCVIPSEAGKTVARRYREILIDEYQDSNFLQEDIL 415 Query: 398 RRIWH-HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-------YTLDTNWRS 449 + + + ++GD KQ+IY FR A ++ + L N+RS Sbjct: 416 NCVTGHGEDRKNMFMVGDIKQSIYRFRMARPDLFLNKYNTYSDREDAEDQKILLSNNFRS 475 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESC 509 A +++++N++F + K Q + G ++ + E Sbjct: 476 AGKVIDTINQIFEPLMSENLGGIDYDESAKLHIGRQDKNNMGYGSEILIVRNDCADSEKS 535 Query: 510 GVGDYQST-----MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-RQE 563 + +S A++ A +I + ++ + + + R V DI+VL+RS ++ Sbjct: 536 QPEEIRSLTNVDIEARMIADEIYELVKGDKPLYIPDGDNGETRRVSYRDIAVLMRSVKKN 595 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A +A IP +++ + F+ +E +L +L + ++ L + L + + G+ Sbjct: 596 AKAFEEAFAERGIP-LFVESESGYFDAIEISTLLDMLAVIDNSHQDYALAAVLRSPLAGV 654 Query: 624 NALDIETL---------------------------------NNDEHAWDVVVEEFDGYRQ 650 ++ + + + D ++ Sbjct: 655 KEQELAEIVGIYDRDFKDHEKNLARTASFYQKVCYYAEKPDSEASEELRQFLRMLDSWKA 714 Query: 651 IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVR 709 + +L +++ + A G+RR +I + + + +R Sbjct: 715 DKNYMSISELLHSILEQTGYYWFVGAMQSGKRRQANIDMLIQKADTYEDSSFRGLFNFLR 774 Query: 710 WLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-- 767 ++ + L+ + ++ L D V ++T+HKSKGLE+P+V++ + N A Sbjct: 775 YMDR--LKTNDLDFAEASVLGDDDDSVVMMTMHKSKGLEFPVVFVSGLANRFSNLDALSP 832 Query: 768 -----------YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 Y A A + + AE+LAE++R+LYVAL+R+ + Sbjct: 833 VTVNADSYLAGYAIDRKNRAKKKTFARAAMLSVMNAEKLAEEIRILYVALSRAKEKLYMT 892 Query: 817 VAPLVRRRGDKKGDTDVHQS-----------ALGRLLQKGEPQDAAGLRTCI-EALCDDD 864 A D + L + + + + + + +D Sbjct: 893 AAVKDPGAEKAVFDYPLQTDFLIEASGQMRMELPYITRMEAGCFMDWILSALSMHIVSED 952 Query: 865 IAWQ------------------------TAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN 900 I + + + + ++ R + Sbjct: 953 IVCRKDTYATWVLAKTGYQNQILAGTKTDMSEENAVQTENETENKSKSMIAQEDRQLYEK 1012 Query: 901 WR-----------------VTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPH 943 ++ S + +++ H ++ L A + + Sbjct: 1013 YKELLDYTYPYKTEQAVKNKMSVTEIKRLAHRGEENPGSDLYQPPVTEAELTIPVLHSRM 1072 Query: 944 QFP--RGASPGTFLHSLFEDLDFTQ---PVDPNWVREKLELGGFESQWEPVL-TEWITAV 997 + +G GT +H + E +DFT+ +R + G E ++ + + I + Sbjct: 1073 KEEPVKGNEMGTVIHKIMELIDFTRNSMDEIREQIRSFFDHGYLEERYREHVRADKIYNM 1132 Query: 998 LQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 + +PL G+ +++ + E +FY+ + I+ P + Sbjct: 1133 VNSPL---GIRMAEAQKNHTLYREQQFYIGMKPEDIS-----------------PEYKDS 1172 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 + +++G ID F + L+DYK++ + + S RY +Q +Y Sbjct: 1173 KDMVVVQGVIDAYFLEGDQVVLMDYKTDRVDQISD-----------LVSRYHVQLDMYAK 1221 Query: 1117 ALHRYLRHRIADY-DYEHHF 1135 +H+ + + Y HF Sbjct: 1222 TIHQLTGRMVTEKIIYAFHF 1241 >UniRef50_C4ZM86 Exodeoxyribonuclease V, beta subunit n=2 Tax=Proteobacteria RepID=C4ZM86_THASP Length = 1321 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 345/1079 (31%), Positives = 484/1079 (44%), Gaps = 89/1079 (8%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVV 62 ++ LDP PL+G RLIEASAGTGKT+TIAALYLRL+LG G AF RPL E+LV+ Sbjct: 1 MSHRLDPACFPLRGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVM 60 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETT---DNPLYERLLEEIDDKAQAAQWLLLAER 119 TFT AAT EL RIR + E E +PL + L D A Sbjct: 61 TFTRAATRELSERIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAM 120 Query: 120 QMDEAA---VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 VFTI +CQRML +AF+SG F+++L DES+L +A D+WR+HCYPL Sbjct: 121 AAAAMDDAAVFTIDAWCQRMLREHAFDSGNPFDEELAADESVLLTEAAQDYWRQHCYPLA 180 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLA----------------- 219 E ++V W AL+ D+ + D + Sbjct: 181 GEALELVLAQWADVHALVEDMRALVGQPLQGADRDDGGDRDRSADPGDQDGVRRDSAGGE 240 Query: 220 --------------SRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKW 265 + + +D + E + ++ +R K + W Sbjct: 241 TLAALIGRVGGAHRRARVALSRGWAERARAMKDWLDE-ELATKAKLWNRTKLHERYYTPW 299 Query: 266 IDKISAWAEE--ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHP-LFEAIDQLLAEPLS 322 ++ + WA + + + + L + KA P P F A L+ + + Sbjct: 300 LEALEQWARNPLDRRLELPDSARHRLTPDGLLEARKADAPAPVLPEHFAAFAGLIEDHDA 359 Query: 323 I---RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFP 379 + R + A + E +A KR+ GF D+L RLD AL G L I T++P Sbjct: 360 LPDPRTALRIHAATRVGERLAELKRQARSFGFADLLDRLDRALAGPHGARLRERILTQYP 419 Query: 380 VAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSE 436 VA+IDEFQDT P QYR+F ++ P +ALLLIGDPKQ+IY FRGADI++Y++AR Sbjct: 420 VALIDEFQDTSPLQYRLFDALYRAADDDPRSALLLIGDPKQSIYGFRGADIYSYLQARRA 479 Query: 437 -VHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI-------PVKSAGKNQALR 488 HY L TN+RSA +V +VN F+Q +D F P ++ Sbjct: 480 TAGRHYMLGTNFRSAHALVGAVNAWFAQAEDRPGAGAFGFRDGADNALPFEAVAAQGREE 539 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP 548 P + + G+ + A CA +I WL G G + Sbjct: 540 VFHADGGVPPALLIHHDLTLRSAGEIRRLFAARCAERIVGWLNDEHAG--FQAPGKAFQR 597 Query: 549 VRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 +R +DI+VLVRS +EAA+VR AL + SVYLS++DSVF + EA ++L L+AV +P Sbjct: 598 LRPADIAVLVRSGREAAEVRRALRRRGLASVYLSDKDSVFASAEAHDLLHWLRAVASPLD 657 Query: 609 ENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSAR 668 +R+ALAT +GL+ ++ L + + A+D E+F WR+ GV+ MLR + Sbjct: 658 ARLVRAALATRTVGLSIPELARLASSDAAFDARSEQFRALHVAWRELGVLTMLRRSLHLL 717 Query: 669 NIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQ-M 727 ++ LA GERRLT+ LH++ELLQ+AG LE E ALVRWL+ I S A +Q + Sbjct: 718 DLPARWLAEPEGERRLTNFLHLAELLQQAGATLEGETALVRWLAMTIEAGGSRAGEEQVV 777 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQE----QAFYHDRHSFEAVLDLNAA 783 RLESD LV++VT+HKSKGLEYP+V LPF T+FR E + S L L+ Sbjct: 778 RLESDADLVKVVTVHKSKGLEYPVVCLPFATSFRAVERRTARYLKLADASGRRRLALDYD 837 Query: 784 PESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQ 843 ++ AEAERL EDLRL YVALTR+ +G A + +G H+SA G LL Sbjct: 838 DADLERAEAERLREDLRLFYVALTRARHALWMGFAAVRIGKGKAC---QTHRSAPGHLLA 894 Query: 844 KGEPQDAAGLRTCI---------------EALCDDDIAWQTAQTGDNQPWQVNDVSTAEL 888 G D A + EA IA + A + + L Sbjct: 895 GGAALDEAAWLAPLQALATAAAQDGATGTEADGRTRIALEAAPPEEAHTLLRRREALPPL 954 Query: 889 NAKTLQR-LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR 947 R W + S+S L + +P A Sbjct: 955 QDSAPYRADFERRWSLGSFSALVRDIDPAQMVALPGAGSAPPAPARGTTADLFAAAPDEA 1014 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG 1006 G++ D + L + + L AP G Sbjct: 1015 GSAA-------PLAADDYGQAEAAGAARILPVHVRRPAADEALVRLEEDAALAPSGADG 1066 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 108/361 (29%), Positives = 150/361 (41%), Gaps = 15/361 (4%) Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 AP + + AG A + A Sbjct: 958 APYRADFERRWSLGSFSALVRDIDPAQMVALPGAGSAPPAPARGTTADLFAAAPDEAGSA 1017 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 + + A R+ + R + + + D + + Sbjct: 1018 APLAADDYGQAEAAGAARILPVHVRRP--AADEALVRLEEDAALAPSGADGGLALAPPDT 1075 Query: 938 PTLTPHQFPRGASPGTFLHSLFEDLDFTQ------PVDPNWVREKLELGGFESQWEPVLT 991 H+FPRGA G FLH + E L +R + E G + L Sbjct: 1076 DRPPWHRFPRGAFAGDFLHDVLEWLAAEGFALGANEGLEAALRRRCERAGHGER-TDELV 1134 Query: 992 EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP 1051 +W+ A+L A L +L L EMEF+LP S L A+ +D L R+ + P Sbjct: 1135 QWMRALLGARLPSLDAALQDLRV--LITEMEFWLP-SAHLQATAVDALCRRHLLHAQPRP 1191 Query: 1052 PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQY 1111 L ++ GML GF DLVF H+GRY++LDYKSN LGED SAY + A+ AAM HRYD+Q Sbjct: 1192 ALPQRELHGMLMGFADLVFEHDGRYWVLDYKSNSLGEDGSAYDRAALEAAMAHHRYDVQA 1251 Query: 1112 QLYTLALHRYLRHRIAD-YDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDE 1170 +Y LALHR LR R+ Y+ GG +YLFLRG+D P +G Y LI L+D Sbjct: 1252 AIYLLALHRLLRARLGGAYEPARQLGGALYLFLRGIDG--PARGEYAIPATPALIELLDT 1309 Query: 1171 M 1171 + Sbjct: 1310 L 1310 >UniRef50_A7VXH9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXH9_9CLOT Length = 1179 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 221/1235 (17%), Positives = 418/1235 (33%), Gaps = 187/1235 (15%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 G L+ A+AG+GKT + + L RP + LL+VTFT AA AE++ R Sbjct: 18 NGSLLVSAAAGSGKTAVLVQRVIERLTD------PERPCDADRLLIVTFTNAAAAEMKER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I EL A L + ++ A + TIH FC Sbjct: 72 ISAAIGELLQADPANA---------------------QLQRQQILLNRAHISTIHSFCNE 110 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ N ++ + + ++ + LLR +A + + G Sbjct: 111 LVRENFYKLDISPDFRISDSAEMTLLRQEAMDEVMEELYAKEDGSFQGLSDAFSFGRDD- 169 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW--------RDAVGELDA 245 R + ++ I++ P + L + A A + + QW + AV + A Sbjct: 170 -RRLMETVETLYDFIRSHPFPERWLDEKEAMYRADLPAGETQWGKIILDYAQSAVDYMAA 228 Query: 246 LIESS---GIDRRKFNRSNQAKWIDKISAWAE-----------------------EETNS 279 L ++S D K + + + +++ +S+ E + Sbjct: 229 LTQNSLSVMEDDEKISAAYREAFLEDLSSLEELRDRIVSKDWNRIAAGVRAFGFAKLKAL 288 Query: 280 YQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--ITRALAEIRE 337 + K D K+ + E ++ + + +V + A+ Sbjct: 289 RGYRDDPLKLRIAGSRDTVKSVFKKLASLFQEDEEKCRQDIRRLVPVVSELFGAVKRFSR 348 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTR-----FPVAMIDEFQDTDPQ 392 + +K+++ F D+ L ++ E R F M+DE+QDT+ Sbjct: 349 RLDEKKQQKRLADFGDLEHWALRLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDTNEA 408 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK----------ARSEVHAHYT 442 Q IFR I + L ++GD KQ+IY FR A +++ ++E A Sbjct: 409 QDMIFRAISREEK--NLFMVGDVKQSIYRFRQAMPEIFLRRKASYPDYDPEKNEYSAKVN 466 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 LD N+RS G+ + VN +F Q M + + E + + Sbjct: 467 LDRNFRSRHGVTDGVNFVFRQLMSVEMGEMEY---TGEEELTPGASYPEREEADTELHIL 523 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-R 561 + D + A+ + I ++ G+ L+ +G RP D VL+R+ Sbjct: 524 TLP----KGADMDTLEAEYIGSLIASMVRNGE----LVQDGGKQRPAAYRDFCVLIRNAN 575 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 L + IP+ + F T E L L+ + P ++ L S L + + Sbjct: 576 AHGGVYAAKLREMGIPAWSDTAGT-FFGTPEVSVALSYLRVLDNPVQDIPLLSVLISPIW 634 Query: 622 GLNALDIETLNNDEH--------------------AWDVVVEEFDGYRQIWRKRGVMPML 661 G D+ + +E + +R++ ++ Sbjct: 635 GFTPDDLAQIRMARKGDAFYFALKDAAERPDVLGARCHRFLEHTEAFRRLAATLPADRLI 694 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDS 720 + L A A G+ RL ++ + + G+ + +R++ + + Sbjct: 695 QRLYEATGYPAVAQAMRQGDLRLNNLRLLMKYARDYEGSGYQGLSGFIRFIDRLQEQDSD 754 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR--VQEQAFYHDRHSFEAVL 778 A + L ++V++++IHKSKGLE+P+ L +E H L Sbjct: 755 LAPAAA--LSESANVVRVMSIHKSKGLEFPICILANTARQFNKRREDILLHPALGLGMKL 812 Query: 779 DLNAAPESVDLAEAER---------LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 D E ++E+LR+LYVA+TR+ + + + K Sbjct: 813 RDETMTVQYDTMPREAVSLEIERGGMSEELRVLYVAMTRAKEKLVMLTSLDDPVKTLGKL 872 Query: 830 DTDVHQS-ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL 888 + S A+ + + + + +C + A + L Sbjct: 873 GAQLTDSKAISPYVVRSAGSFSDWILSCALRHPSGGGLREKAGVLPGVMLTEGENWKILL 932 Query: 889 NA-----KTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR----------LDVDAAGVAS 933 N +T+ ++ + L + P + AG + Sbjct: 933 NPVREQQETVSGETEKRRQIQADPELTALLQKRFSFVYPGEALKSVPAKVAASELAGKEN 992 Query: 934 VVEEPTLTPHQFPRG-----ASPGTFLHSLFEDLDF--TQPVDPNWVREKLELGGFESQW 986 E ++ F G A GT LH + D+ + +R LE G + Sbjct: 993 AKEYAAMSRPAFLTGQTMTPAERGTALHLYMQFADYRLAKQDPEKQLRFLLEKGFLTQEQ 1052 Query: 987 EPVL-TEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDP 1045 + + I Q+ L + N + E+ F + ++ + L Sbjct: 1053 AEAVSLKKIERFFQSGLYRRMEQ-----SENLRREIRFTVELAASEVNPGL--------- 1098 Query: 1046 LSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAH 1105 + + +L+G +D VF G L+DYK++++ + Sbjct: 1099 ------TGQNGREPVVLQGAVDCVFEENGGLILVDYKTDYV-----------KEEQELKN 1141 Query: 1106 RYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVI 1139 RY Q LY LAL + ++ + Y Y G + Sbjct: 1142 RYCRQLSLYALALEQTTGLKVTEQYLYSFSLGEAV 1176 >UniRef50_C9LTM8 ATP-dependent nuclease subunit A n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTM8_9FIRM Length = 1251 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 233/1291 (18%), Positives = 438/1291 (33%), Gaps = 254/1291 (19%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + +R +L V+ LLVVTFT AA AE+R RI Sbjct: 21 NLLVAAAAGSGKTSVLVERIIRRILQG--------ETDVDRLLVVTFTNAAAAEMRERIE 72 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + K A+ L + A++ T+H FCQ ++ Sbjct: 73 AAL---------------------AQEIAKGTASPKLERQLALLSNASISTLHAFCQNVI 111 Query: 138 NLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETW--KGPQAL 193 N + + +L ++ LL+ A + + + + G +AL Sbjct: 112 RRNFSVIDLDPKFRLANEQERRLLQQNALEEVFEKKYDEAQEDFLSFAAAYGTEHGDEAL 171 Query: 194 LRDINRYLQG---------------------EAPVIKAPPPDDETLASRHAQIVARIDTV 232 + R E + P LA ++ A + + Sbjct: 172 YAMVLRLYAFSCSQPFPSRWLDSLAESFDLAEQQRLLDTPWAQSVLAQISFELAAGLAAI 231 Query: 233 -----KQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 K AL I + + W A++ P+ ++ Sbjct: 232 ERLVEKAAALGYETCHAALEGDEKILKDLLDALAARDWEGLRQAFSSYAHARMSFPKGMD 291 Query: 288 KFSQRFLE-------DRTKAGGETPRHPLFEAIDQ-LLAEPLSI--RDLVITRALAEIRE 337 + + + DR K + R F A ++ LL + ++ I + + Sbjct: 292 EEEKEEAKRLFTQPRDRVKQRLKKLRETYFHATEEELLDDLRALSGMAHAIVDVVKDFTA 351 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRSESGEV-------LAAAIRTRFPVAMIDEFQDTD 390 + K+ RG + F+D+ + L + A A+R ++ M+DE+QDT+ Sbjct: 352 SFQAAKKERGVVDFNDLEHFALAVLCDKDASEGELRPSAQALALREKYEEVMVDEYQDTN 411 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHYTLD 444 Q I + L +GD KQ+IY FR AD ++K + E A L Sbjct: 412 GVQEAILSLVARDD---NLFAVGDVKQSIYRFRLADPQLFLKKQREYPTLGEKYARIDLS 468 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS G++ +VN +FSQ E+ + + A+++ ++ Sbjct: 469 ENYRSRAGVLAAVNWIFSQLMTPE-AMELTYDDAAALHFAALYPEDSPKSLAGAVELHII 527 Query: 505 EGESCGVGDYQ-------------------------------STMAQVCAAQIRDWLQAG 533 E ++ + + + A A ++R+ +++G Sbjct: 528 ESDAESSVEPEEEDEEKAETSAVADGGAETPEGEEEEELKGFALEAAFIARRVRELMESG 587 Query: 534 QRGEALLMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 AL+ + D RP+R DI +L+R+ R +A + + L +IP+ + F+ E Sbjct: 588 ----ALVADKDGYRPLRWRDIVILLRAVRTKADILLETLRDADIPAYATLDA-GYFQATE 642 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-------------------- 632 + +L +L + ++ L +AL + ++GL+ ++ L Sbjct: 643 VRVVLAVLAVIDNARQDVPLAAALCSPIVGLSVSELAELRLAALEEDIFGALLVVNDPAA 702 Query: 633 ----NDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 + D + G+R + R+ V ++ + + + AGG R ++ Sbjct: 703 KFSASLREKVDAFLRLLKGWRDLVRRVSVPELIWQIYRDTGYYDYVGGMAGGLLRQANLR 762 Query: 689 HISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 +++ T +R++ + S L + +V+I+TIHKSKGL Sbjct: 763 MLADRARDYEETNFRGLFRFLRFIEKMQQM--ETDLSAARTLGEGEDVVRIMTIHKSKGL 820 Query: 748 EYPLVWLPFITNFRVQEQA-------------FYHDRHSFEAVLDLNAAPESVDLAEAER 794 E+P+V + + + + A Y A + + E Sbjct: 821 EFPVVIVAGLGSKFNMQDASQDLLMHRELGLGLYRTEREKSLRYSTFAREAVAERIKRES 880 Query: 795 LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT--------------DVHQSALGR 840 AE+LR+LYVA+TR+ L + + + S L Sbjct: 881 KAEELRVLYVAMTRAREKLILVGSTKKLAACAEGWCSFVTQTERALPAHAALAANSFLDW 940 Query: 841 LL--------QKGEPQDAAGLRTCIEALCDDDIAWQTAQTG------------------- 873 L + AA L + +DD WQ Sbjct: 941 LGMTVARHADGAPLREKAALLEKRVAPEGEDDSRWQVEIVPASAVASVSAAVAEDNELFE 1000 Query: 874 ------DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG---HGIAQDLMPRL 924 + + D L + + S + L++R + L Sbjct: 1001 KLRRGEPLEASEEKDDVEQMLAWQYAPHGVDNVPAKLSVTELKRRFSVEDAAEEKAYIPL 1060 Query: 925 DVDAAGVASVVEEPTLTPHQ-FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLE----- 978 +V + P + A GT +H++ + +D + ++L Sbjct: 1061 KEVHGSSKNVFKRPDFMQEKAGLSAAEYGTLMHAVLQHIDLAGDTGREGLEKQLANMVEK 1120 Query: 979 LGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDT 1038 Q + V + + + LQ+PL AR E+ F + Sbjct: 1121 ELLLPEQAKAVRLDAVASFLQSPLGTRMK-----KARRLWHELPFSRRLE---------- 1165 Query: 1039 LIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQA 1097 + P + R ++G ID++F E G LLDYK++ + Sbjct: 1166 --------AHSFYPEAEPEARIFVQGVIDVLFEDEAGALVLLDYKTD-----------KN 1206 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 A +Y LQ ++YT A+ L ++A+ Sbjct: 1207 TRPAAVREKYRLQIEIYTEAVEAILGRKVAE 1237 >UniRef50_C0EV13 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EV13_9FIRM Length = 1221 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 204/1284 (15%), Positives = 406/1284 (31%), Gaps = 220/1284 (17%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ E + ++ A AG GKT + + L++ P+ + L Sbjct: 1 MNYTKEQEQAI-FLRDKNIMVSAGAGAGKTRVLVSRMAELIMDE------KNPVEADRFL 53 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 V+TFT AA AE++ RI ++ E +L R+ Sbjct: 54 VMTFTNAAAAEMKERISLDLEERLAKDPEN---------------------HYLRKQIRK 92 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 + +A + T+H FC ++ + E + ++ E+ L LR QA Sbjct: 93 IRQADISTVHSFCNHLIRTHYNELSIDPSFRIGEEGELFLLRQQAIEQLLEEAYASGRES 152 Query: 179 IAQVVFETWKGP-QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT------ 231 + G +L ++ L + E Q+ + Sbjct: 153 FVKFAESYAPGKSDKVLEELVGDLYRFSRSFPNASFWFEKTKQEALQLAEAKEWDNSPAV 212 Query: 232 ---VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 + ++ + E +AL + + + +S + E + + Sbjct: 213 MLIFLKAKKELLQEKEALSKLLKNIAGEEVPEKYGVLLQDVSEYVEALSQTESYDAYYMV 272 Query: 289 FS----QRFLEDRTKAG-------GETPRHPLFEAIDQLLAEPLSIRDLVITR------- 330 S F K + + E + + + + R Sbjct: 273 LSRGPVPAFPRATKKDKEWADYEIVKEWHQEVKELLQKQKETVFTAPAEELQREAAGIYP 332 Query: 331 -------ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-------VLAAAIRT 376 E K+ + FDD+ L E A + Sbjct: 333 LLEEYIVLAQRFEEIYLAYKKEKNVYDFDDLEHFALELLVDHYDEGGQAYPSETAKTLAK 392 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE 436 ++ + +DE+QDT+ Q I + + L +GD KQ+IY FR A +++ + Sbjct: 393 KYKMIFVDEYQDTNLVQETILEMLS-EKDNNTLFTVGDVKQSIYRFRQARPDLFLRRNEK 451 Query: 437 VHAH-----YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVF 491 H L N+RSAPG++ N +FS+ + F + + + + + Sbjct: 452 YHNEEEGVSIELRDNFRSAPGVLCFTNYVFSRLMERD-FGGVDYNEETALRAGEGGPMLE 510 Query: 492 KGETQPAMKMWLMEGESCGVG-DYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 ET + ++ + T + +I++ ++ G Sbjct: 511 DKETSELLFFVKDSVQTLEEAPEDVLTETALITKRIQELIEEG---------------YH 555 Query: 551 ASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 DI +L+RS + + L IP V N+ F T E +L L V ++ Sbjct: 556 YGDIVILLRSGAGRMEPMAEFLEKNGIP-VSCENKTGYFHTREITIILNYLSVVDNVYQD 614 Query: 610 NTLRSALATSMMGLNALDIETLN---------------------------NDEHAWDVVV 642 + S + +S+ G ++ L Sbjct: 615 IPMASVMLSSIGGFTEEELTKLRILVREPMREQYTLYDLMCLYLQEGAEEELRAKIQHFY 674 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQL 701 ++ +R+ +++ + +L + ++ G +R ++L + + T Sbjct: 675 KDLQYFREQKKEQPLGVLLWDIYQRTGFYYDVQLMPDGAKRKENLLMLLKKAEDYEKTVF 734 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR 761 + R++ Q L+ + ++++V+I+TIHKSKGLE+P+V++ ++ Sbjct: 735 KGLFYFNRYMEQ--LKSYEIELGEAGSGTENENVVKIMTIHKSKGLEFPVVFVSGLSKKF 792 Query: 762 VQ----EQAFYHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTR 808 + + H + + L E++R+LYVA+TR Sbjct: 793 NRMDLTKPMLCHPELGIGMECVNITLRFHHPSLMKRAIQEKVWKDTLEEEMRILYVAMTR 852 Query: 809 SVWHCSLGV--------APLVRRRGDKKGDTDVHQSALGRLLQKG-EPQDAAGLRTCIEA 859 + L A L + +K L +L + Sbjct: 853 AKRKLILTGIIKAQDLEAGLRLQINTQKWRATSAMDWLLPILADQFRSTQSEKSEEREGF 912 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP---------------------- 897 L + + Q G W + E ++ Sbjct: 913 LKNQETQKQAHSEGVTASWLKARLVNWEEILPFFEKERKQKEEFSYQIFMDTVVIPADVS 972 Query: 898 --------------GDNW-RVTSYSGLQQ-RGHGIAQDLMPRLDVDAAGVASVVEEPTLT 941 W R S S L+ + ++ + + V+ P Sbjct: 973 MVEQSFSYEYPNRDATKWKRKYSVSELKTLSQTTLPEEESSIMLPEQNNFEEEVKMPEFL 1032 Query: 942 PHQF--PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELG-GFESQWEPVLTEWITAVL 998 + + GT +H + E L F Q + E ++ G + E + +W+ + Sbjct: 1033 KEEKSEIAATARGTIIHKIMELLPFGQIQTKKQLFEWIDALKGTYPESEKISAKWLYRAI 1092 Query: 999 QAPL-NETGVSLSQLSARNKQV-EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 +A L +E G LSQ+ + E+ F + + L+ + Sbjct: 1093 EAFLFSEIGEKLSQMDRQGNLRKELPFTVGLPVSLMNADTQA------------------ 1134 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 + +++G ID+ E +L+DYK++ + E ++ RY Q Y Sbjct: 1135 EDTVVVQGIIDICGEAEESLWLIDYKTDRIKEG---------EESLLLDRYGNQMLYYKA 1185 Query: 1117 ALHRYLRHRIAD-YDYEHHFGGVI 1139 AL + L R+++ Y Y I Sbjct: 1186 ALEQILGKRVSESYLYSFSLKKFI 1209 >UniRef50_C0ZQ88 Exodeoxyribonuclease V beta chain n=6 Tax=Corynebacterineae RepID=C0ZQ88_RHOE4 Length = 1105 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 266/913 (29%), Positives = 406/913 (44%), Gaps = 73/913 (7%) Query: 318 AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLA-AAIRT 376 E + V+ A A + V R KR +G F+D+L+ L L +A +R Sbjct: 198 EEETAPGQRVLFAAAARL--EVERRKRTKGIRDFNDLLTLLHGVLTDPEYGPVACRRVRE 255 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSE 436 +F V +IDEFQDTDP Q+ I R +H T L+L+GDPKQAIYAFRGA++ +Y+ A + Sbjct: 256 KFKVVLIDEFQDTDPLQWDILRLAFHG--HTTLVLVGDPKQAIYAFRGAEVLSYLDAVDQ 313 Query: 437 VHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ 496 AH L TNWRS PG++ ++ L+ A I PV+++ K L + Sbjct: 314 ADAHQELTTNWRSDPGLLAALEHLYGGA--ALGNEGIVAHPVEASHKKSRLSGPVPMRVR 371 Query: 497 PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 556 + G ++V + +A L D RPV D++V Sbjct: 372 HLPRTGAGPLNRSGFPAVGRLRSRVADDV-AADVVGLLGSDARLAVDGDPRPVEPGDVAV 430 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 LVR+ ++ A +RDAL + +PSV L+ SVF T A + LWLLQA+ P R + +R Sbjct: 431 LVRTHKQVAMIRDALDAVGVPSV-LTGGSSVFATPSATQWLWLLQAIEQPHRSDRVRLTA 489 Query: 617 ATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA 676 + + G A +++ + ++ + + Y ++ + G + + + N+ + +LA Sbjct: 490 LSPIFGRTAEELDV--DGDNVVAELAGQLRSYSGLFARVGFAAVFERISAETNLEKRVLA 547 Query: 677 TAGGERRLTDILHISELLQEAGTQLE-SEHALVRWLSQHILEP-DSNASSQQMRLESDKH 734 GER TD+ H+++LL T+ ALVRWLS I +P +A+ + RL+SD Sbjct: 548 APSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSRRLDSDAA 607 Query: 735 LVQIVTIHKSKGLEYPLVWLPFIT---NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE 791 VQI T+H +KGLE+P+V++PF HD + + + Sbjct: 608 AVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPDGRRILDVGGQEGPGHNARK 667 Query: 792 ----AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 AE E+LRLLYVALTR+ L AP + +H+ LGR EP Sbjct: 668 TVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGT-----SRSPLHRLMLGRTPGIAEP 722 Query: 848 ---------QDAAGLRTCIEALCDDDIAWQTAQTGDNQP--WQVNDVSTAELNAKTLQRL 896 A A D I+ + P W + EL A R Sbjct: 723 ARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVQWSGAAANVTELAAARFDRD 782 Query: 897 PGDNWRVTSYSGLQQRGHG-----------IAQDLMPRLDVDAAGVASVVEEPTLTPHQ- 944 WR TSYS L H +D P VD V E +P Sbjct: 783 LDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDEPEDSVDFGTVTPSPLEALPSPMNG 842 Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGG---FESQWEPVLTEWITAVLQAP 1001 P GA+ GT +H + E +D + + L + + V+Q P Sbjct: 843 LPAGAAFGTLVHEVLEVVDTAASDLRAELGIRCAEAVSVRAAEVDSEALADALLLVMQTP 902 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLD-------TLIRQFDPL-------S 1047 L +L+ ++ +++ E++F LP++ + L+R+ P + Sbjct: 903 LGFG--TLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILASYA 960 Query: 1048 AGCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDS---SAYTQQAMAAAMQ 1103 +E +RG L G ID V R G + ++DYK+N LG + YT++ MA M Sbjct: 961 DHLDRVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMM 1020 Query: 1104 AHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK--EHPQQGIYTTRPN 1161 Y LQ LY++ALHRYLR R+ DYD H GG Y F+RG+ P+ G++ +P Sbjct: 1021 RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPP 1080 Query: 1162 AGLIALMDEMFAG 1174 A L + ++ AG Sbjct: 1081 AQLTVELSDLLAG 1093 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 95/247 (38%), Gaps = 23/247 (9%) Query: 8 LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67 D L G ++EASAGTGKT+ I L R + + ++L+VTF+ A Sbjct: 3 FDLLGPLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLA--------DISQVLLVTFSRA 54 Query: 68 ATAELRGRIRSNIHELRIACLRETT----DNPLYERLL-EEIDDKAQAAQWLLLAERQMD 122 AT ELR R R + A + D+ L L + ++ + LL A + D Sbjct: 55 ATQELRERARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFD 114 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 + T H FCQRML+ + +E L + +D + Sbjct: 115 AGTITTTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPP-- 172 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL--ASRHAQIVARIDTVKQQWRDAV 240 + AL I R G+ I P ++ET AR++ +++ + Sbjct: 173 ----FSTKDAL--AIARIAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVERRKRTKGI 226 Query: 241 GELDALI 247 + + L+ Sbjct: 227 RDFNDLL 233 >UniRef50_B9XFA1 Recombination helicase AddA n=1 Tax=bacterium Ellin514 RepID=B9XFA1_9BACT Length = 1211 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 232/1247 (18%), Positives = 441/1247 (35%), Gaps = 182/1247 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 MS + + +G L+ A AGTGKT T+ L L+ P +++E+L Sbjct: 1 MSFTPAQQEAII--ARGNVLVVAGAGTGKTRTLVERCLHCLVEEKP------PTSLDEIL 52 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT+AA AE+R RIR+ + + L + TD+ Sbjct: 53 MVTFTDAAAAEMRQRIRARLEQ----ELAKHTDDL-----------------RWTEQLTI 91 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLI--EDESLLRYQACADFWRRHCYPLPR- 177 D A + T+H FC +++ + +E + + ++ E+ LL + + + H Sbjct: 92 FDTAHIGTLHSFCLQLVRQHFYELELDPQLTVLPEEEARLLADETLENLLQSHYAGDAEG 151 Query: 178 ----------------EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD------ 215 + + + LRD +L+ + + +P P Sbjct: 152 AEAVQQLIQVQGRGWDQPIRTLVLRLHHYTQTLRDPADWLKSQLEMFASPEPAQWRTWLI 211 Query: 216 ETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEE 275 E + + + + + K A AL + W Sbjct: 212 EGITDWRNRWLPALQSEKSDNLKATECCRALASLLENPSLEQGAEALENIWAADLEWPRG 271 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEI 335 + ++ P FL + E PL E D + + S + + Sbjct: 272 KKTDWRKPLEDFLEEATFLRSLARKTKE--VDPLAEDWDWIRGQMTS-----LLGLAEQF 324 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSE---SGEVLAAAIRTRFPVAMIDEFQDTDPQ 392 + KR G + F D+ L +A R + +DE+QD + Sbjct: 325 SAAFSLAKRELGVVDFHDLEQHSLQLLWDRNTKQATAVARQWRKKLRFVFVDEYQDINDA 384 Query: 393 QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK----ARSEVHAHYTLDTNWR 448 Q I + + E+ L+GD KQ+IY FR AD + R L N+R Sbjct: 385 QDAILKALSREGEESNRFLVGDVKQSIYRFRLADPHIFQNYIETWRGADGKAIPLVDNFR 444 Query: 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK--GETQPAMKMWL--- 503 S ++N +N LF + + N R E P +++ L Sbjct: 445 SREAILNFINSLFEGLMRRDIGSVPYDDEARLRFGNAENRVDLSCAKEDAPRVELHLRLK 504 Query: 504 --------MEGESCGVGDYQS----TMAQVCAAQI-RDWLQ-AGQRGEALLMNGDDARPV 549 EGE G + A+ A I + L ++ A + RPV Sbjct: 505 GSLEAKDMPEGEGEGSRAWTEMMNLEEAEKEARLIGKRLLALKAEKHLAWDEHTKAMRPV 564 Query: 550 RASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 SD++VL+RS ++A + L IP + R +E++E ++L LLQ + P + Sbjct: 565 TWSDMAVLLRSPARKAESYAKEFSRLGIPLLVA--RGGFYESMEVTDLLSLLQLLDNPLQ 622 Query: 609 ENTLRSALATSMMGLNALDIETLN---NDEHAW-------------------DVVVEEFD 646 + + L + ++G++ ++ T+ W D ++ F Sbjct: 623 DVPTLAVLHSPLVGMSLDELATIRLKLTKGPIWMALRRFHESDEEHAGWKKADRFLKNFA 682 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT-QLESEH 705 +R++ R+ + L A++S + A LL GE+R ++ + L Q+ Q + Sbjct: 683 SWRRLARQVSLSRCLEAVLSETHYAAWLLTQHRGEQRHANVQRLLGLAQQFDRFQRQGLF 742 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV--- 762 +R++ + + ++ +++ V ++++H+SKGLE+P+V + + Sbjct: 743 RFLRFIDAQ----QAAETEPEVAAVAEEDAVSLMSVHQSKGLEFPVVVVADLGKPFNMMD 798 Query: 763 -QEQAFYHDRHSF---------EAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 + + D+ + + E L E++RLLYVALTR+ Sbjct: 799 LRAEIMLDDKFGLCPQVKPPHTGQRYPSLPYWLARQRQKQEMLGEEMRLLYVALTRARDT 858 Query: 813 CSLGVAPLVRRRGDKKGDTDVHQSA--------LGRLLQKGEPQDAAGLRT--------C 856 L + + +T +A L L L+ C Sbjct: 859 LILTGSISEPVFNKRWLETSELTAATLLAARNFLDWLAGWCTKITGTVLKENQGRNSLFC 918 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW-----------RVTS 905 + DD +T+ + ++ ++ S A + +W TS Sbjct: 919 WKVYEDDTHLIETSPSAASEAEKMEQTSVPMDAASWKKLQQKLSWIYPHSAATHEPAKTS 978 Query: 906 YSGLQQR-GHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR--GASPGTFLHSLFEDL 962 S L++R I + P ++ +A + ++ + R A GT HS + + Sbjct: 979 VSALRRRMAEDIETEARPLFELKSANPQTKAQQRKNGNNNSERLSAAEVGTTHHSFLQMV 1038 Query: 963 DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLS-QLSARNKQVEM 1021 + +R + + E + A ++ + L Q +R+ + E+ Sbjct: 1039 SLERVGSVEELRREAKRLEAEQLLTVEEAGSLDFPALAAFWKSELGLRIQRQSRHVRREL 1098 Query: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081 F + S +A P F + +++G DL + +L+D+ Sbjct: 1099 AFTVRFSPEEVAGNTPK------------DPELFDEEFVVVQGVADLTVLLPDQIWLVDF 1146 Query: 1082 KSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 K++ + T +A ++ Y+ Q QLY AL R + + Sbjct: 1147 KTDRI-------TSAELAEKVKI--YEPQLQLYAQALARIYHRPVTE 1184 >UniRef50_UPI00016C0036 Recombination helicase AddA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0036 Length = 1186 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 197/1247 (15%), Positives = 410/1247 (32%), Gaps = 187/1247 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M E + L L+ A+AG+GKT + ++ +L G + ++ L Sbjct: 1 MGFTTEQQLAIDLQ-DKNILVSAAAGSGKTAVLTERVIKRVLNTG-----KNRVDIDRFL 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +VTFT AA +E++ RI + + + +L Sbjct: 55 IVTFTNAAASEMKERIEIKLGDALSTAADGEEVD------------------YLQKQLGL 96 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 + +A++ TIH FC +++ + E G+ + ++ L+ A D Sbjct: 97 LGKASISTIHSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAFEEESDA 156 Query: 179 IAQVVFETWK--GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT-VKQQ 235 Q+ G A I + + + + +A+ A A + + Sbjct: 157 FYQLCDAYGSVNGMDAXASMILQIYKFTQSTVFPQKWLAQQVATLXAGDNAAFEASLAAD 216 Query: 236 WRDAVGELDALIESS-----------------GIDRRKFNRSNQAKWIDKISAWAEEETN 278 R + + L+E + G + + ++ + + + + +SA A Sbjct: 217 LRLELESIQTLLERALVIAKKPNGPLHYADSIGFNLQNLSKMDLSSFANIVSALANCNIA 276 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA-------EPLSIRDLVITRA 331 + S + + + L + L +S + R Sbjct: 277 ALSRKRPACDLSLKDAAKSLSSTATSRLKYLQDNYAILADPTVISKTASISTIFKELARL 336 Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSE-----SGEVLAAAIRTRFPVAMIDEF 386 + + +K+ G L F+D+ L +E + +A + + IDE+ Sbjct: 337 VTTFETRYSEKKQDLGVLDFNDLEHYAIKLLVTESDGALAPTTVAKELGKYYSEIYIDEY 396 Query: 387 QDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------- 439 QD + Q I I + ++GD KQ+IY FR ++ ++ + Sbjct: 397 QDVNDVQETILSAIATNGATR--FMVGDIKQSIYKFRLSNPKIFLDKYNRFQQFSPTAAA 454 Query: 440 --HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQP 497 L N+RS ++++ N++F + + I + + F + Sbjct: 455 DIRIDLSHNFRSRAIILDAANEIFERLMRPAVGDLIYDQAQRLYAGREYATFDETAKQCE 514 Query: 498 AMKMWLMEGESCGVGDY---QSTMAQVCAAQIRDWLQ-AGQRGEALLMNGDDARPVRASD 553 + L ++ + A + A ++D L + D R V D Sbjct: 515 LHLLELSTLDADDAEEPSNKAELEAAMIAKIVKDILDGNSNPKIVYDKDLDIYRAVEPRD 574 Query: 554 ISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 613 I++LVR++ + +AL + + + Y S FE E + M+ L+ + ++ Sbjct: 575 IAILVRAKAVSTAFENALYKVGVDA-YAEISKSFFEATEVELMINFLKIIDNINQDIPFL 633 Query: 614 SALATSMMGLNALDIETLN--NDEHAWDV---------------VVEEFDGYRQIWRKRG 656 S L +S++GL+ ++ + D ++ E +G+R++ + Sbjct: 634 SVLHSSLLGLDFDELSEIRTYADGSFYNACVAYKQLHPHSKLADFFAEIEGFRKLSKMVP 693 Query: 657 VMPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHI 715 V ++ + + G R ++ + + + + +L Q Sbjct: 694 VSELIDQVFLQTGYLGYVSMLDHGAIRSANLRILKQTAIDFEQNTKVGLFNFLIFLEQ-- 751 Query: 716 LEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ----EQAFYHDR 771 L D + Q + V+I++IHKSKGLE+P+V L Q + H++ Sbjct: 752 LRNDEASIQQAKSAVDQNNTVKIMSIHKSKGLEFPIVILANAHKRFNQMETYQPILLHNQ 811 Query: 772 HSFEAV-------LDLNAAPESVDLAE--AERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 A +D P + E ++E++R+LYVALTR+ + Sbjct: 812 LGLGAQFRDMEKYVDYTTLPYLAIKNKIFNENISEEIRILYVALTRAKEKLIVTAVTNSF 871 Query: 823 RR------------------GDKKGDTDVHQSALG---RLLQKGEPQDAAGLRTCIEALC 861 ++ + AL L + AG Sbjct: 872 DSLLSNALLHATEHIDSIFIRNQNSYLNWIILALAHNPYTLTESVANFNAGTMGQWIIKQ 931 Query: 862 DDDIAWQTAQTGDNQPWQVNDVSTAELN-----------AKTLQRLPGDNWRVTSYSGLQ 910 +++ A +P N+V + + +R + L Sbjct: 932 YSRLSFADADADFVEPPSSNEVIQDIFDLIATDTSSNSLKDEIFAKLDYEYRHILDTTLP 991 Query: 911 QRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP 970 Q +L ++ + P G S G +H++F+ LD+ + D Sbjct: 992 Q--KISVSELKTKMSDSISSAPYSSNIPKFIASSSYDGLSHGNIIHAVFQHLDYLKYTDH 1049 Query: 971 NWVREKLELGGFESQWEP-----VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 +R+ +E +++ + + + + + + E F Sbjct: 1050 TSIRQNIESMIAQNKLAKNTLAIANIDRLVSFANSAIINRMRKAA-----FSFKEQPFLY 1104 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 + + + R ++ G +D F G+ ++DYK++ Sbjct: 1105 QLPQ--------------------------SEGRSLISGIVDAYFEENGKIIIIDYKTD- 1137 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDY 1131 + +A RY LQ Q Y+ AL + + Y Y Sbjct: 1138 --------STKAHTKIEIVDRYRLQIQWYSEALQNITHKVVTERYLY 1176 >UniRef50_C9KJP8 ATP-dependent nuclease subunit A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJP8_9FIRM Length = 1283 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 227/1321 (17%), Positives = 413/1321 (31%), Gaps = 275/1321 (20%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + LL R +V+E+LVVTFT AA E+R R Sbjct: 15 HRNILVAAAAGSGKTRVLVDRIIAQLL--------ARECSVDEMLVVTFTNAAATEMRER 66 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + + L E DD+ AA WL + A++ T H FCQ+ Sbjct: 67 IDKALQKK-----------------LLETDDRETAA-WLERQIVLLSGASICTFHAFCQK 108 Query: 136 MLNLNAFESGMLFEQQLIEDESL-LRYQACADFWRRHCYPLPRE---------IAQVVFE 185 ++ N + + +L D+ + L + + Y +P + + V + Sbjct: 109 VIRQNIDAIDVDPQFRLASDQEMVLMRRDVLEELLESSYKMPEDEAGKAKWQDFLEFVDD 168 Query: 186 TW--KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT------------ 231 G +A+ + + + A+ T Sbjct: 169 YGDDHGDEAVYEAVLKLYHFCQSQPFPKAWLRQQQERYEAEAADFWQTPWTATIVEAVGR 228 Query: 232 -------------------------------VKQQWRDAVGELDALIESSGIDRRKFNRS 260 Q + + + +E R Sbjct: 229 EIERSIHAYEAACALVRTGGRPEAEEAALLAAWQPYVEYLQSCIEKLEEVQTVYRTALAE 288 Query: 261 NQAKWIDKISAWAEEETNSYQLPESLEKFSQRF--LEDRTKAGGETPRHPLFEAIDQLLA 318 +A D + A A+ + E F + + + + +A D+ LA Sbjct: 289 KKAGGWDALCAAAKGWKQPVLRGKKYEALRDAFPDIRKAFEKSRDEAKKIFTDARDRYLA 348 Query: 319 EPLSIRDLVIT----------RALAEIRETVAREKRRRGELGFDDMLSRLDSAL------ 362 E + I + + K+ R L F D+ + L Sbjct: 349 EMEASVLEDIRACSATVRRYVDLTTAFIDALQAAKKERNVLDFSDLEHFALAVLCRDSEA 408 Query: 363 ---------RSESGEVL----AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL 409 R E G+ L A +R ++ V M+DE+QDT+ Q I I Sbjct: 409 LAGASEADFRGERGKALRTDAAEDLREKYAVIMVDEYQDTNGVQEAILNLIARADNR--- 465 Query: 410 LLIGDPKQAIYAFRGADIFTYMKARSEVHAH---------YTLDTNWRSAPGMVNSVNKL 460 +GD KQ+IY FR AD + + + T+ N+RS ++ +N + Sbjct: 466 FTVGDVKQSIYRFRLADPYLFQAKYDAYPENPGAEDMDQLITMKQNFRSRAEVLAPINFI 525 Query: 461 FSQTDDAF-----------MFREIPFIPVKSAGKNQ-ALRFVFKGETQPAMKMWLMEGES 508 F Q ++ + + K L + +GE + ++ ++ Sbjct: 526 FDQVMTREAMEIEYDEKSRLYPGASYPEAEHTLKGPMELDIILRGEPEQPVEGLSQAADA 585 Query: 509 CGVGDYQSTM-----AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS-RQ 562 + AQ A +I +++G + RP+ DI+VL+R+ + Sbjct: 586 GDETGGEELEGFELEAQHIADRIAGLMESG--YRVFDKDAGGYRPLAYRDIAVLLRAVKG 643 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 +A + + L IP+ + FE E + +L LL+ + +E L + L + + G Sbjct: 644 KANTLLELLRKNSIPAYADVDG-GYFEANEVRLVLALLKTIDNARQEIPLAAVLVSPIGG 702 Query: 623 LNALDIETLN---NDEHAWDVVV---------------------EEFDGYRQIWRKRGVM 658 ++ L DE + ++ + +R V Sbjct: 703 FTMEELARLRMSVPDEDLFGALLRSHSPETPLEEGLADRAADFCASLNRWRSYAVSHSVP 762 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILE 717 ++ L + + GG R ++ +++ + T +R+L L Sbjct: 763 ELIWKLYRETGYYDYVGGLKGGLLRQANLRMLADRAAEYEKTNYRGLFRFLRFLED--LR 820 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHS 773 S L + + +V+I++IHKSKGLE+P+V + I Q A H Sbjct: 821 KRDTDLSVARTLGASEDVVRIMSIHKSKGLEFPVVIVADIAKGFNQLDARGTFLLHKELG 880 Query: 774 FEAVL-----------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVR 822 L D AE AE++R+LYVA+TR+ L Sbjct: 881 IGPRLVERSTVGRQMYDTLPYQAIGARIVAETKAEEMRVLYVAMTRAREKLILTGTLAAA 940 Query: 823 RRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV-- 880 + + + L ++A I + W Sbjct: 941 KWEKQAARYARSLDSRELALPDDMIREADSYLDWIAPAVARHTDGAPIREAAGVDWGEML 1000 Query: 881 --------------------NDVSTAELNA--------KTLQRLPGDN--WRVTSY---- 906 EL+A + L P + S+ Sbjct: 1001 DAVEPAAHFAVNLLSAEAIQPREEQEELDATLQSVREGRALPASPERELVEKRLSWHYDA 1060 Query: 907 ------------SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP-RGASPGT 953 S ++QR ++ P A V P + A GT Sbjct: 1061 EELPGITAKMTVSEIKQRFAESLREDEPAALPVAPAAPPVWRRPQFLQQKGRLSPAERGT 1120 Query: 954 FLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW-----ITAVLQAPLNETGVS 1008 +HS+ ++LD + +R ++ + I + Q+ L + Sbjct: 1121 LMHSILQNLDLHGDLTREGLRAQVARMEVTGMIAAGHEDAVNYTSIESFCQSSLGQRMQQ 1180 Query: 1009 LSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDL 1068 A E+ F + P+ P + ++G ID+ Sbjct: 1181 -----AVRVWRELPF-----------------SRMIPVGEVNPTYAGSSEKIFVQGVIDV 1218 Query: 1069 VFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 +F +G LLDYK++ T + + Y Q +LY A+ + + Sbjct: 1219 LFEEADGSLILLDYKTDR------DTTPEKIRR-----HYAKQIELYREAVESIVGKEVK 1267 Query: 1128 D 1128 + Sbjct: 1268 E 1268 >UniRef50_A6W6P2 Exodeoxyribonuclease V, beta subunit n=2 Tax=Actinomycetales RepID=A6W6P2_KINRD Length = 1125 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 293/1081 (27%), Positives = 440/1081 (40%), Gaps = 96/1081 (8%) Query: 174 PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 E+ V E + L D + V+ DD A A++ + Sbjct: 62 AATAELRDRVRERLVATRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFD 121 Query: 234 QQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL-----PESLEK 288 + E + +S + S A ++ + EE + L P + Sbjct: 122 TATVATIHEFCRQVLTSLGTAADVDPS--ATLVEDVDDLVEEVCDDLYLRFAVRPGAGVP 179 Query: 289 FSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 R R E D L P ++R R +R V KR R Sbjct: 180 PFDRPTALRIARAAVDRADARIEPPDTLPGSPENLR----VRFALGVRREVEARKRSRRV 235 Query: 349 LGFDDMLSRLDSALRSESGEVLA-AAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 LGFDD+L+RL AL +A +R R+ V ++DEFQDTD Q+ + R +H Q Sbjct: 236 LGFDDLLTRLRDALTDPVAGPVACERLRRRYSVVLVDEFQDTDAVQWDVLRTAFHGQGP- 294 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 L+LIGDPKQAIYAFRGAD+ +Y+ A TL TN RS P ++ L A Sbjct: 295 -LVLIGDPKQAIYAFRGADVRSYLDAAGVAGTTATLSTNHRSDPLVLAGTAALLRGA--A 351 Query: 468 FMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES--------CGVGDYQSTMA 519 + I PV +A AL +++ ++E + VG+ ++ +A Sbjct: 352 LGEQRIVVRPVDAAHAAAALVDGSGAPDPAPVRVRVLERDGLPTTGRGLPPVGEARAVVA 411 Query: 520 QVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSV 579 + AAQ+ L+ G R R + A D++VLVR+ +AA V++ L +P V Sbjct: 412 RDTAAQVVAVLREGLRVRPRD---GGERDLEAGDVAVLVRTGAQAALVQEELRRRGVPCV 468 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD 639 LS SVF T AQE + LL+AV P R +R +S +G +A +++ + A D Sbjct: 469 -LSRGPSVFATPAAQEWISLLEAVEQPHRAPRVRRVALSSFVGRSAAELD--AAGDRATD 525 Query: 640 VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGT 699 + + + + +RGV + A + LL GGERRLTD+ HI+E+L Sbjct: 526 ELSVQLREWGAVLTERGVAGAFAVVGEAHRLPGRLLGVEGGERRLTDLRHIAEVLHRESA 585 Query: 700 QLES--EHALVRWLSQHILEPDSNAS-SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 +L+ WL + E +A + RL++D+ VQI T+H SKGLE+ +V +PF Sbjct: 586 LNPGGGVSSLLSWLRARVEEAAGDADRERSRRLDTDRAAVQIATVHTSKGLEFEVVCVPF 645 Query: 757 ITNFRVQEQ-----AFYHDRHSFEAVLDLNAAPESVDLA----EAERLAEDLRLLYVALT 807 + H A+ A + E L E+LRLLYVA+T Sbjct: 646 GWDAPGGGGSKDRLPVAHAPDGPRALHVGGPGAPGYAAACRAADTEDLGEELRLLYVAVT 705 Query: 808 RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG---RLLQKGEPQDAAGLRTCIEALCDDD 864 R+V + AP + + L L G+ ++ L + A Sbjct: 706 RAVSRLLVWWAPSQNTEEGALHRLLLAEDPLAVPESLPVPGDEVLSSRLASRFPAGGPVA 765 Query: 865 IAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHG-----IAQD 919 + +T ++ A L + WR TSYSGL + H A Sbjct: 766 VETVPLRTPED-RLPAVAAPAAHLAVARFRGAVDLGWRRTSYSGLTRGVHDGPGAGHAVL 824 Query: 920 LMPRLDVDAAGV-------------ASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 P +DV V P G GT +H++ E D Sbjct: 825 AGPEVDVTDDEVDLDAAGATAADDDPRGWRATVSPMADLPAGTGFGTLVHAVLEGFDPAV 884 Query: 967 PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFY 1024 P D L F+ Q L + VL+ L G +L ++ E++F Sbjct: 885 P-DRTAHLAALAREQFDPQPAEDLALALGPVLRTGLGPLAGGAALEGFPVADRLAELDFE 943 Query: 1025 LPISEPL-------IASQLDTLIRQFDPLSA---------GCPPLEFMQVRGMLKGFIDL 1068 +P++ + L+R+ P P L +RG L G ID Sbjct: 944 MPLAGGDAAGPAGPRVGDVAGLLRRHLPPGDPVHRYADALEDPVLGEEGLRGYLTGSIDA 1003 Query: 1069 VFRH-EGRYYLLDYKSNWLGEDSS-----AYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 V R EG + ++DYK+N LG Y ++A+ A+ A Y LQ LY +ALHR+L Sbjct: 1004 VLRRREGGFLVVDYKTNRLGAPGEILTAWHYRREALDEAVLAAHYPLQALLYCVALHRFL 1063 Query: 1123 RHRIADYDYEHHFGGVIYLFLRGVDK-------EHPQQGIYTTRPNAGLIALMDEMFAGM 1175 R R YD H GGV+YLFLRG+ + G+++ RP AGL+ + E+ AG Sbjct: 1064 RWRQPGYDPAVHLGGVLYLFLRGMCGPEVPAGEDGVPPGVWSWRPPAGLVVDLSELLAGR 1123 Query: 1176 T 1176 T Sbjct: 1124 T 1124 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 79/180 (43%), Gaps = 19/180 (10%) Query: 1 MSDVAETLDPLRLPLQGER-----LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLT 55 MS P L G ++EASAGTGKT+TIA L R + T Sbjct: 1 MSAATPA--PAVFDLAGPLPVATTVLEASAGTGKTYTIAGLVTRYVAEGVA--------T 50 Query: 56 VEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTD----NPLYERLLEEIDDKAQAA 111 V++LLVVTF AATAELR R+R + R A + + + L + A+ Sbjct: 51 VDQLLVVTFGRAATAELRDRVRERLVATRDALADPASARRSRDAVLAHLAADDARAAEHR 110 Query: 112 QWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRH 171 L A D A V TIH FC+++L + + L+ED L + C D + R Sbjct: 111 ARLSEALAGFDTATVATIHEFCRQVLTSLGTAADVDPSATLVEDVDDLVEEVCDDLYLRF 170 >UniRef50_A5EXI1 Exonuclease V, beta subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXI1_DICNV Length = 1198 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 273/1234 (22%), Positives = 493/1234 (39%), Gaps = 108/1234 (8%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 + + PL G+ LIEASAGTGKT+T+ L LL + E ++ TFT A Sbjct: 4 EIMDFPLSGKVLIEASAGTGKTYTLTG-ILLRLLLSEVPSKGIFARAPEAIIATTFTRKA 62 Query: 69 TAELRGRIRSNIH-----------------ELRIACLRETTDNPLYERLLEEIDDKAQAA 111 AE+R R++ ++ E + + A Sbjct: 63 AAEMRMRLKMRLNAMHHLLQALAQTLLQSDEEETDYYAHIAHLLTLWAENAQTPAEKAAQ 122 Query: 112 QWLLLAE------------------------RQMDEAAVFTIHGFCQRMLNLNAFESGML 147 + L A +D + T+ CQ L + + E+G Sbjct: 123 ESLNHALILEAVQENGIDGFTDLCQRCNSVIATLDRLFIGTLDSLCQHWLRMFSLETGTA 182 Query: 148 FEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPV 207 +L++ + + R+ + + + P + I+ L Sbjct: 183 QSTKLVDGHEEI-TEIVHQQLRQFYWQYSDYHEYL--SSINPPAHYAKAISGQLN---YA 236 Query: 208 IKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWID 267 A D A ++ + K A+ ++ + ID Sbjct: 237 DAAVDEIDVPSDENFAALLEQTKNTKMDDFLALFASQKIVSKLTDPELLWQALLTQTPID 296 Query: 268 KISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV 327 + + + + ++ E F + ++ + + P+F A+ ++ + Sbjct: 297 EEN--IKIIETWHNAVKTGEGFLKAAKSEQIETICQHDCAPIFLAVTSAFLAQKNLNKTL 354 Query: 328 ITRALAE----IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMI 383 A E +R + + +G+ F+ +RL+ AL ESG LA I R+PV ++ Sbjct: 355 AACAAKETLLAVRSQLPAQLEMQGKATFNHYTARLNQALAGESGAALARYIAHRYPVLLV 414 Query: 384 DEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV--H 438 DE QD + QQ + RI+ LLL+GDPKQAIY FRG D+ Y++ ++ Sbjct: 415 DESQDLNAQQAQFIERIYLKNLEADRHFLLLVGDPKQAIYRFRGGDVANYLRLKAAFSQQ 474 Query: 439 AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA 498 Y+L N+RS+P ++ ++NKL+ D A I + P+ +A +AL+ V P Sbjct: 475 ECYSLTKNYRSSPALIAALNKLYQ--DRAAFGGGIDYEPMTAAVTQRALQSVDGAAITPP 532 Query: 499 MKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQA--GQRGEALLMNGDDARPVRASDISV 556 + + ++ + I +Q + + + RP+R SDI V Sbjct: 533 LYWLETKNDNEHLA-------------IVHLIQNLTAKNSIYAYHDKQNRRPLRYSDILV 579 Query: 557 LVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSAL 616 L SR + +++ L I Y + + S+F + A + L A++ P+++ L Sbjct: 580 LGTSRSKLEELQILLQQHGINVDYSAEK-SIFASDLAAAIATFLAAMLAPQQQEQLNRLF 638 Query: 617 ATSMMGLNALDIETLNNDEHA--WDVVVEEFDGYRQIWRKRGVMPMLRALMSA----RNI 670 + L+ ++ L+ A + + Q+W+++ ++ L+ ++ I Sbjct: 639 ISPFFRLSLAELTALSQPSSALNYAQLSAVLTEAEQLWQQKKLLSALQLFLTTDFAGLTI 698 Query: 671 AENLLATA--GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMR 728 E L ER L D+ + +++ + G +L++ +RW + + ++ M Sbjct: 699 WERLARLPYPENERALLDLRQLQQIIADRG-RLDTLDQFLRWWKFMLTTLPTADWAKMMP 757 Query: 729 LESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVD 788 L S + ++++TIH +KGL+ P+V + + R + FY + D A E V+ Sbjct: 758 LPS-QDALRLMTIHSAKGLQAPVVIISGLGKHRKHDALFYPYHTATG---DFRIATEKVE 813 Query: 789 LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQ 848 + E E RLLYV LTR+ + + L ++ GD D L + K Sbjct: 814 ENQQEDDDEKARLLYVGLTRAEDLLFVALQSLRKKDGDFFADAHAGMKRLDPVRFKNTAV 873 Query: 849 DAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSG 908 + L ++ +++A + Q ++T E + T R W +S++ Sbjct: 874 NHGFL-----SVNPEELAQRLTQPQYTLSSASETIATIEQD-PTYPRQRFYGWSKSSFTA 927 Query: 909 LQQRGHGIAQDL-MPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP 967 L + D+ +P + A ++ + P +F RG G+FLH L +DL T Sbjct: 928 LTRYVDENTVDISLPDYAEEEAESETIADPDLALPARFARGTKAGSFLHQLLKDLPETPA 987 Query: 968 VDPNWVREKLELGGFESQWEPVLTE------WITAVLQAPLNETGVSLSQLSARNKQVEM 1021 E+L + L + W A++ +PL + +L+ LS K EM Sbjct: 988 QFWRGHIERLAKQYRLLERTAALDDYAQYEAWFQAIMASPL-VSQTTLAALSPAQKVDEM 1046 Query: 1022 EFYLPIS-EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080 +F L ++ + S ++ L +++ L G ID ++ + +YY +D Sbjct: 1047 KFILHVAGKSFNISAVNRLFERWEKPLTLHQ---KQASIRFLCGEIDFCYQQDDKYYFID 1103 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY 1140 YKSN+LG Y AM AM H Y LQ +Y ALHR+L+ R+ +Y H G Y Sbjct: 1104 YKSNYLGTAPQEYHVSAMKKAMNEHHYWLQALIYQTALHRFLQTRLKNYQPALHLGYPEY 1163 Query: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 F+RGVD E G + L+ D + +G Sbjct: 1164 FFIRGVDAEEQTLGHFPVDLPLDLVLEFDAILSG 1197 >UniRef50_C4V2E5 ATP-dependent deoxyribonuclease subunit A n=2 Tax=Selenomonas RepID=C4V2E5_9FIRM Length = 1260 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 226/1304 (17%), Positives = 401/1304 (30%), Gaps = 256/1304 (19%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ A+AG+GKT + + S L+++ +LV+TFT+AA E+R RI Sbjct: 20 HNILVAAAAGSGKTRVLVERII--------SQVRNEELSLDRILVLTFTKAAALEMRERI 71 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + ++ A + ++ L + A + T H FCQR+ Sbjct: 72 EAALNAEIDAIAGDAG--------------ISKEIDRLERQRILLTGADISTFHSFCQRL 117 Query: 137 LNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWK---GPQ 191 L + + + +L ++ LL+ + R E + Sbjct: 118 LQAHIDATDIPPTFRLASEQEIRLLKRDVMDELLERKYEEASDEFLAFADAYGGVKGDDE 177 Query: 192 ALLRDINRYL-------------------------QGEAPVIKAPPPDDETLASRHAQIV 226 L ++ E L A Sbjct: 178 KLKEEVLALYDFALSQPSPAVWLSRQGQEEDDVPYWKRRGFDVLARELHEKLFDLCAGYH 237 Query: 227 ARIDTVKQQWRDAVGELDALIESSGIDRRKFNR-----------SNQAKWIDKISAWAEE 275 + +D + Q + + + + + + W A Sbjct: 238 STMDVLMQGDAELHTAAEKYMAVIHHNLDLYEELQGGLQLLISGAEDQAWERFRVDAAAA 297 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSI---------RDL 326 + +P + L K A+DQL A + Sbjct: 298 KKQRKSIPHKSIENYDPELGGALKKKITNIYKAWDAAVDQLPATAEELCAAENRANTAIR 357 Query: 327 VITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-----------GEVLAAAIR 375 R + EK R L F D+ R + L +A +R Sbjct: 358 QYARLALDFHHAFQNEKLERSLLDFSDLEHRALALLCRHPEQLQDDLNSVDPTDIAEELR 417 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS 435 + M+DE+QDT+ Q I R+I H ++GD KQ+IY FR AD + Sbjct: 418 AYYAAIMVDEYQDTNGLQEGILRQIAHDDNR---FIVGDVKQSIYRFRLADPSLFQHTYR 474 Query: 436 EV------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF 489 T+ N+RS ++ +N++FSQ + Sbjct: 475 AYRQDSSAGELITMSENFRSRAEVLQPINEIFSQIMTESAVEIAYDQSARLNPGRTFDDD 534 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQ--------STMAQVCAAQIRDWLQAGQRGEALLM 541 +++ L++ + + + A +I++ + AG + Sbjct: 535 PAGKSLASPLEIDLLDADYSAEEADDEGEELAAFAVESHYIARRIKELVDAGYTVQ---- 590 Query: 542 NGDDARPVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 + +R SDI VL+R +E A + DAL IPS Y + FE E + ML LL Sbjct: 591 ---SGKALRWSDIVVLLRGAKERAVILMDALREAGIPS-YADDTAGYFEASEIRMMLSLL 646 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNND---EHAWDVV---------------- 641 + ++ L + L + M+G++ ++ L +D + Sbjct: 647 AVLDNARQDTPLTAVLTSPMIGMSMEELALLRIHTPVGSIYDALKGADAEEVPPAVRNKA 706 Query: 642 ---VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEA 697 ++ +R+ V +L L + + A G R ++ + + Sbjct: 707 KEALQTIRCWRREALLHSVPELLWHLYRTSGYYDYVGALPDGILRQANLRMLIDRAGDFE 766 Query: 698 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757 T +R++ L+ S S L + +V+I+TIH+SKGLE+P+V+L I Sbjct: 767 RTNERGLFRFLRYMD--ALQRRSTDLSAARTLGESEDVVRIMTIHRSKGLEFPVVFLANI 824 Query: 758 TNFRVQEQA----FYHDRHSFEAV-----------LDLNAAPESVDLAEAERLAEDLRLL 802 + YH D ++ E +AE++R+L Sbjct: 825 AGAFNTQDISGDVLYHAHAGIGVRVYENTEIGRQKYDTLGRRSVKEVIRRETIAEEMRIL 884 Query: 803 YVALTRSVWHCSLGVAPLVRRRG---------------DKKGDTDVHQSALG---RLLQK 844 YVA+TR+ L R G ++G+T + LG L Sbjct: 885 YVAMTRAQEKLILTGTLRTSRSGLSRLAQLRDFCQQYAREEGETFPDAAILGASCYLDWI 944 Query: 845 GEPQDAAG-------------LRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK 891 LR + + + A + + AEL+A Sbjct: 945 ALALMRHPDGQALMEGVEGIELREWSDEKARFAVRIEKADV-RTSRSEEERAADAELSAI 1003 Query: 892 TLQRLPGDNWR------VTSYSGLQQ-----RGHGIAQDLMPRLDVDAAGVAS------- 933 R + S++ + +L D + S Sbjct: 1004 RSGEPLSPGVRAPYVDSILSWTYDSRGTEQIHAKTSVTELKRENFPDEEVLPSFAPAVGA 1063 Query: 934 VVEEPTLTPHQFPRGA--------SPGTFLHSLFEDLDFTQPVDPNWVREKLELG----- 980 +F R A GT +H+L + LDF + D + + Sbjct: 1064 GAGGQEWEVPRFLRTAKRAALSPMERGTAMHALMQHLDFAEVPDIAAIERQARSLFDQGI 1123 Query: 981 GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLI 1040 E ++ + + + + L A+ E+ F Sbjct: 1124 LTEEAYQSLDVRNVWRFVSSALGRRLR-----EAKRVYRELPF----------------- 1161 Query: 1041 RQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR-YYLLDYKSNWLGEDSSAYTQQAMA 1099 + P + R L+G ID++F E Y LLDYK++ ++ Sbjct: 1162 GRLLPAKKYYKEAQDEADRIFLQGIIDVLFEEENGDYILLDYKTDR-----------HIS 1210 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143 RY Q LY A+ L + + YLFL Sbjct: 1211 PQDARTRYQFQIDLYCDAVETILERPVKE----------CYLFL 1244 >UniRef50_C6IZE1 Recombination helicase AddA n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZE1_9BACL Length = 1341 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 229/1352 (16%), Positives = 417/1352 (30%), Gaps = 268/1352 (19%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G+ L+ A+AG+GKT + +R L +PL+V+ LLV TFT+AA AE+RGRI Sbjct: 27 GDMLVAAAAGSGKTAVLVERIIRKLTD------REQPLSVDRLLVATFTKAAAAEMRGRI 80 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + +E +P E L + A++ T+H FC + Sbjct: 81 TEAL-------EKELAKDPGNEY--------------LNHQLAMLGRASITTLHSFCMEV 119 Query: 137 LNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHC--YPLPREIAQVVFETWKG--- 189 + + ++ + LLR + + P ++V Sbjct: 120 IQRYYTLIPLDPGFRIASESETALLRQEVLEELLEDKYGSEPEDSPFLKLVDLFGGERSD 179 Query: 190 -------------------PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ------ 224 P L++ + ++L + Sbjct: 180 TAVFTLVQRLYDFSRSHPWPDHWLQEASSAFMAPDLDALEKSAWVQSLLADTKLALGGAI 239 Query: 225 -IVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWA-----EEETN 278 ++ + + L + + R W A+ + + Sbjct: 240 SLLTQAKALALSPGGPEPYAVTLEDDLNVVRSLQEAVAGGAWASLYDAFQGVNFGKLKPV 299 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEP--LSIRDLVITRALAEI 335 + + + L + K R L+ + L E ++ ++ ++E Sbjct: 300 KKDQTDPEVQERVKALREEAKKTVTDLRTQLYGRPPEAFLREMHDMAPLLGALSELVSEF 359 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALRSES-------GEVLAAAIRTRFPVAMIDEFQD 388 E +K +G L F D+ LR A R +F ++DE+QD Sbjct: 360 GERYRLQKVSKGWLDFSDLEHYCLQILRHPDSEPGELRPSDAALEYRRQFDEVLLDEYQD 419 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-------HY 441 T+ Q I R I P ++GD KQ+IY FR A+ +++ Sbjct: 420 TNTVQETIVRLISRENPGNR-FMVGDVKQSIYRFRLAEPGLFLEKYRIYGDNFDGAGLRI 478 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----------EIPFIPVKSAGKNQALRFV 490 L N+RS +V++VN LF Q + + F P + L + Sbjct: 479 DLARNFRSRREVVDAVNLLFRQIMNESVAEISYDTRAELVYGEGFPPEGAEDYRPELLLI 538 Query: 491 FKGETQPAMKMWLMEGESCGVG-------------DYQSTMAQVCAAQIRDWL-QAGQRG 536 + G++ + A+ AA+IR L + G+ Sbjct: 539 DRDNGSSGGSDSSERGDNEWTDGDGGDEEDEAALIEAVRLEARAIAARIRGMLGEGGEPL 598 Query: 537 EALLMNGDDARPVRASDISVLVRSR-QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 RPV D+ +L+RS A + + L + IP+ Y F+ E + Sbjct: 599 RIYDKQLQAMRPVAFRDMVILLRSTLTWAPAMIEELRVEGIPA-YGELSQGYFQASEVET 657 Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN----------------------- 632 ML LLQ + P ++ L + L + + + ++ + Sbjct: 658 MLSLLQVIDNPLQDIPLAAVLRSPLYDFSEEELADIRLASPSGRYYEAVLARAAAGNAES 717 Query: 633 --NDEHAWDV---------------------------VVEEFDGYRQIWRKRGVMPMLRA 663 +D D + + + +R + R + ++R Sbjct: 718 ALSDSRGGDAGEASVYHPETGQIEPSANDALALKLQAFLRQLEAWRSMARVGQLGDLIRE 777 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEA--GTQLESEHALVRWLSQHILEPDSN 721 + E + GG +R +++ + + ++ + +R++++ + Sbjct: 778 IYRETGYLEWVGGLPGGTQRQSNLQALLDRARQYEVSSSAPGLFRFLRYVTRLRE--NGG 835 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHSFEAV 777 V+I+TIHKSKGLE+P+V++ ++ ++ H F Sbjct: 836 DLGAPGDAGEQGDGVRIMTIHKSKGLEFPVVFVAGLSKQFNRQDLNAPFLMHKELGFGPK 895 Query: 778 ---------LDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK 828 A+ E LAE++R+LYVALTR L + + + Sbjct: 896 YVDANTRVSYPTLPNLAIRRRAQMELLAEEMRVLYVALTRPKDKLVLVSSVKNLTKSVEA 955 Query: 829 GDTDVHQS---ALGRLLQKG------------------EPQDAAGLRTCIEA-LCDDDIA 866 + S LL +G E + AGL A L D Sbjct: 956 WGGALEASEQQLPDYLLARGRCYLDWIGPALIRHPSARELRQFAGLPEVGPAVLADSPSD 1015 Query: 867 W--------------------------------QTAQTGDNQPWQVNDVSTAELNAKTLQ 894 W Q QP V A ++ Sbjct: 1016 WHIAFLSARSAGQNGGAETEAAATAEATAVDTAQIKALLSGQPTAVLAEDADGTEAAEMR 1075 Query: 895 RLPGDNW-RVTSYSGLQQ-RGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPG 952 + Y+ + ++ L + V V E L + A Sbjct: 1076 AMVESRLSWTYPYAAASRIAAKTSVTEMKALLMLQEEPVRDVFAEAELLREREQAEAEEQ 1135 Query: 953 T--FLH----SLFEDLDFTQPVDPNWVREKLELGGFESQ-----WEPVLTEWITAVLQAP 1001 LH E T ++ F+++ + L I + Sbjct: 1136 PDFKLHLRRPRFMEQRKLTPTERGVAYHTLMQHLPFDAEPGIAVVQATLARLIERKIMTA 1195 Query: 1002 LNETGVSLSQLS-------------ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 + + ++ A + EM F + + QL L D + Sbjct: 1196 EQAAAIEVDSIARLLQSPLGELLRQADWVKREMPFSYGLPAAEASPQLGGLEAMQDGTAG 1255 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 E +++G +D +F G+ YLLDYKS+ + E AA A Y Sbjct: 1256 DAIR-ELDGETVLIQGIVDCLFAAGGKVYLLDYKSDRVLEHRGG-------AAALAESYR 1307 Query: 1109 LQYQLYTLALHRYLRHRIADY-DYEHHFGGVI 1139 Q +LY A+ + + Y G + Sbjct: 1308 FQLELYAKAVEEITGSTVDEKWLYFFDGGQAV 1339 >UniRef50_C4G1J5 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1J5_ABIDE Length = 1183 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 204/1228 (16%), Positives = 402/1228 (32%), Gaps = 172/1228 (14%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + LL P+ ++ELLVVTFT A E++ R Sbjct: 17 DDNMLVSAAAGSGKTAVLIERVMGRLLDE------RAPINIDELLVVTFTRDAAGEMKER 70 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + I + + + ++ + L+ + EA + TI FC++ Sbjct: 71 IGAAISKKLEEEVAKDANSDISL--------------RLMKQYSLLSEAHMSTIDSFCKK 116 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWKGP-QA 192 ++ N E+ + + ++D ++R + + + V +G Sbjct: 117 VVMENFKEAEIDPSVRTLDDTEGVIIRKKVLEELLETEYEIRHADFINFVEYFARGKSDK 176 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQ----------IVARIDTVKQQWRDAVGE 242 +L D+ L + + + ++ + ++ V + R+ Sbjct: 177 ILEDLILQLYRFSESLPDKESWFDREINKMEEPFKGSEFEEILLDYCRIVLAELRNEAER 236 Query: 243 LDALI--------------ESSGIDRRKFNRSNQAKWI--DKISAWAEEETNSYQLPESL 286 L + + + + + +A T + Sbjct: 237 FVKLSLSPYGPVQYESTGSSDIELFTGLMKAESFENLLVLAENTGFARLSTKKTVDVDEE 296 Query: 287 EKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEPLSIRDLV--ITRALAEIRETVAREK 343 +K + + D K + E ++++ A ++ + R + + + EK Sbjct: 297 KKELAKSIRDGYKESFNKLKEDFLSENVEEIEASRKVTAGVLKELIRLVRKFDKAYIEEK 356 Query: 344 RRRGELGFDDMLSRLDSALRSESG-EVLAAA-IRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 +R L D L E G +AA + +F MIDE+QD++ Q +I I Sbjct: 357 NKRNMLDISDWAHLALKVLLDEEGKPSVAAKAYKEQFAEIMIDEYQDSNLLQEKILTSIS 416 Query: 402 HHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYTLDTNWRSAPGMVN 455 + ++GD KQ+IY FR A +++ ++ L +N+RS P +++ Sbjct: 417 READGQPNIFMVGDVKQSIYKFRQAKPELFIEKYNKYSQRNKGKRIDLHSNFRSGPEVID 476 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKS-AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY 514 SVN +F +T + + + G++ L+ E Sbjct: 477 SVNAVFERTMTESLGGIVYDEAARLVKGRDDKLQNELNKTEILLFDKSNEIPEELLKLSD 536 Query: 515 QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ-VRDALTL 573 A + A +I+ + + ++ S+I++L+R+ E A+ R L Sbjct: 537 IELEAYMVAGRIKRLMVEKE-------------GLKYSNIAILLRTNVEWAESFRRILIS 583 Query: 574 LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN- 632 IP++ + F E Q M+ LL+ + P ++ L + L + + G + ++ L Sbjct: 584 EGIPAI-CESSVGYFSAWEVQVMISLLKILDNPHQDLPLGTVLLSPIGGFDEQELAELRI 642 Query: 633 ---NDEHAWD-----------VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 DE W + F+ R V +++ L N + A Sbjct: 643 NSNKDEDLWTILNLSENEKSLKFINWFNEQRSKLIFTPVHELIKELYEESNFYSYVRAMP 702 Query: 679 GGERRLTDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQ 737 GE R ++ + T L VR++ + V+ Sbjct: 703 SGETRAANLDMLVYKAKAYEATSLHGVVHFVRYIDKLRKY----EVDFGEAGAGGAEAVR 758 Query: 738 IVTIHKSKGLEYPLVWLPFITNFRVQEQAF---YHDRHSFEAVLDLNAAPESVD------ 788 I++IHKSKGL+YP+V++ + + + + N Sbjct: 759 ILSIHKSKGLQYPVVFVSGMAKSMNNQDSRASMVIQAELGIGIDYFNIETREKKTTILKK 818 Query: 789 ----LAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGD------------TD 832 E +AE++RLLYVA+TR+ L + Sbjct: 819 MLAGKIRLENVAEEIRLLYVAMTRAEDKLLLTAGLEDVEDKLVSWEHDEQGYMSLSKANS 878 Query: 833 VHQSALGRLLQKGEPQDAAGLRTCIEALCD---DDIAWQTAQTGDNQPWQVNDVSTAELN 889 + A+ L+++ C + L D D+ A + D + Sbjct: 879 LLDFAMPALIKEKNEGRLTIAVQCAKELVDSKMDEAAEKEVLESDITKLISSLPEPDGYE 938 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP--- 946 A ++ ++ + ++ + +V P +F Sbjct: 939 AIKEMISREKDYIYPFKEAVELKSKMTVSEIKRLHLEEEEIGEAVYNLPHKEAPEFEPYI 998 Query: 947 -----------RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWI- 994 +GA+ GT HS+ +DF ++ + + + I Sbjct: 999 PDFMSKEPEETKGAARGTLYHSILSRMDFGNISGKETFKDYIAKLNIDKKITNEELSSID 1058 Query: 995 -TAVLQAPLNETGVSLSQLSARNKQ-VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPP 1052 + + + Q +K E F + I Sbjct: 1059 LRHFAKFFESNLYKRMRQAFLNSKLYREAPFVIGIDR----------------------E 1096 Query: 1053 LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 1112 + + +++G ID F L+DYK++ + Y +Q RY LQ Sbjct: 1097 INTEKETVLVQGIIDAWFTENEDVILVDYKTDRV------YGKQG--EEELIRRYKLQLD 1148 Query: 1113 LYTLALHRYLRHRIADYD-YEHHFGGVI 1139 Y AL R + Y G I Sbjct: 1149 NYAEALSRITGKMPKEKLIYSFALGKEI 1176 >UniRef50_Q897M0 ATP-dependent nuclease subunit A n=1 Tax=Clostridium tetani RepID=Q897M0_CLOTE Length = 1147 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 173/1183 (14%), Positives = 376/1183 (31%), Gaps = 220/1183 (18%) Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLP--REIAQVVFETWKGPQ 191 M+ N + ++ ++ LL+ +A + + Y E +++ Sbjct: 1 MIRNNFHIIDIDPTFRVADETETILLKQEALEEVFENVYYDGNYTDEFKELLNSFGGKDD 60 Query: 192 ALLRDINRYLQGEAPVIKAPPPDDET-----------------------------LASRH 222 L ++ + L + + P L Sbjct: 61 RKLSELVQNLYNFSQSLSWPFKWLNEKVEGFNIEKDYDFGKSIWGTTLKENIKIELEGVK 120 Query: 223 AQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL 282 Q ++ +K+ + V ++ + E ++ ID + + +L Sbjct: 121 NQFQRSLNILKEYEEELVDYIEVIEEELNYIKKLLGEHEDNNIIDGLLCFDLSRLPGKRL 180 Query: 283 PESLEKFSQRFLE--DRTKAGGETPRHPLFEAIDQLLAEPLSI--RDLVITRALAEIRET 338 ++ + ++ D+ K + + + + + R + + + Sbjct: 181 KGEVKDTKDKAIKVRDKAKESINKLKEDIGLGYENVEKNMKDLYPRMKCLIELVMKFTME 240 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEV------LAAAIRTRFPVAMIDEFQDTDPQ 392 + KR + + F+D+ L E +A R +F ++DE+QD++ Sbjct: 241 YDKRKREKNIIDFNDIEHFALEILTDFDKEEKVNPSSVALEYRNKFEEVLVDEYQDSNFV 300 Query: 393 QYRIFRRIWHHQP-----------ETALLLIGDPKQAIYAFRGADIFTYMKARSEVH--- 438 Q I I L ++GD KQ+IY FR A +++ + Sbjct: 301 QEAILNSISRQNNLQSKIEDEKLIIPNLFMVGDIKQSIYRFRQAKPELFLRKYNNYSEEV 360 Query: 439 ----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 L N+RS ++ VN +F Q + K + Sbjct: 361 SSKYRKIKLFKNFRSRKNIIEGVNFIFKQIMSKNVGELEYGEEEKLNYGADFKELEEGKD 420 Query: 495 TQPAMKMWLMEGESCGVG-------------DYQSTMAQVCAAQIRDWLQAGQ--RGEAL 539 + +++ LM+ E D A++ I + ++ + Sbjct: 421 LERDIEIHLMDKEENIEPYTEELGLEEEENIDNIQLEARMVGKVINNLIKDEESNSFMIQ 480 Query: 540 LMNGDDARPVRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 + + R V+ DI +L+R + A + L + IP V+ FET+E + ++ Sbjct: 481 DKSTKEYRKVQYRDIVILMRATSAMANVFTEELNNVGIP-VFADTSSGYFETIEIKTIMS 539 Query: 599 LLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV-------------- 641 +LQ V P ++ + S L + + DI + D ++ + Sbjct: 540 ILQIVDNPRQDIPMLSVLRCPIFSFSPEDIIDIRLINRDISIYECLEKIKNKEPCLEEEK 599 Query: 642 -----------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 +E+ + +R + + L + + A GG +R Sbjct: 600 VYIDEINEELKERIISFLEKLNLWRDNSIHMSIDQFIWYLYTETGYYGYVGAMPGGVQRQ 659 Query: 685 TDILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 ++ + E Q T + + ++++ L S L ++++V+I++IHK Sbjct: 660 ANLRLLFERAKQYENTSYKGFFNFISFINK--LRNTSGDMGSAKILGENENVVKIMSIHK 717 Query: 744 SKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEA---------VLDLNAAPESVDLA 790 SKGLE+P+V + ++ +H + F Sbjct: 718 SKGLEFPVVIMAGTGRGFNLQDIRKDILFHHQLGFGPEYVDLDKKIKYPTIMKKIIAQKI 777 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA 850 + E +E++R+LYVA TR+ + + + + + G+ L + E + Sbjct: 778 KLETFSEEMRILYVAFTRAKEKLIITGSVKNIEKSMSEWCFTGGEG--GKRLPEYELIKS 835 Query: 851 AGLRTCIEALCDDDIAWQTA------------QTGDNQPWQVNDVSTAELNAKTLQRLPG 898 I I +Q DN W + EL L+ Sbjct: 836 KNYLDWIMPTLTRHICFQKHIRRQFPEIEIKNGIEDNSCWSLQLWHKKELLEDKLEETKE 895 Query: 899 D--------------------------NWRVTSYSGLQQRGHGIAQDLMPRLD------V 926 NW+ + ++ R + Sbjct: 896 RDIIKEIEWNKEKSCKNIHEEEVEKRLNWKYKYIKASEIPAKLSVSEIKSRFELLDTGNS 955 Query: 927 DAAGVASVVEEPTLTPHQFPR--GASPGTFLHSLFEDLDFTQPVDPNWVREKLELG---- 980 D ++ +F + A GTF H + + +DF + + ++E Sbjct: 956 DNLIEENIFFRKPQFLEEFKKFSSAEIGTFTHLVIQHIDFQRTNSIEDIENQIEELIKRE 1015 Query: 981 -GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 + Q + + + I +++P+ + + N + E FY+ +S + + + Sbjct: 1016 FLTKEQAKVINIKKIYNFIKSPIVDRIK-----KSDNVRREESFYIEMSSKDLIPSISEV 1070 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + + +++G IDL F+ +LDYK++++ + Sbjct: 1071 YK---------------DEKILIQGVIDLYFQEGNDLIILDYKTDYIED----------- 1104 Query: 1100 AAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLF 1142 +Y LQ Y AL + ++ + +YLF Sbjct: 1105 IEKTKEKYYLQIDYYKKALEKITGKKVKEK--------YLYLF 1139 >UniRef50_D0LU04 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU04_HALO1 Length = 1284 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 304/1282 (23%), Positives = 487/1282 (37%), Gaps = 143/1282 (11%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 + L L + +++EASAGTGKT+ I + LLL +E++LVV Sbjct: 33 AIPRALAAL--DPERHQVVEASAGTGKTYLIEHRVVDLLLSTD--------TPIEQILVV 82 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122 TFTE ATAELR R+R I + A ++ + R+ A+A + L A D Sbjct: 83 TFTEKATAELRFRVRRLIENVAAARQHTAAEDAPHWRI------DAEARRKLTDAMLGFD 136 Query: 123 EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182 AA+ TIH FCQR+L NAF S LF Q + E+ A R + Sbjct: 137 RAAIHTIHAFCQRVLTENAFSSRRLFAQTQVAGEAAFGD-AFKAALREELAREDDHKRYL 195 Query: 183 VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242 G + D+ + L A P+ + A A + Sbjct: 196 AAWYRSGRS--VDDLEKLLFRCASQSGRMVPEFDEAALASRLRAASAEM--PACASDEDA 251 Query: 243 LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302 A I+ +G+ + + + + + + + K Sbjct: 252 FLAAIKRAGVRGQSARAVYRRLALLRELLDGFAVHADIADFLVAFEAADGAVTSSGKERL 311 Query: 303 ETPRHPLFEAID--------------QLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 E+ D L + + V R + + +K R G+ Sbjct: 312 LDYVAGHLESADIDDDALAAARDVVLDLAGVIVPLSAAVAQRFSPSVVARLESDKNRYGQ 371 Query: 349 LGFDDMLSRLDSALRSESGEV----LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--- 401 F DML + +L ++ + L A +R R+ A+IDEFQDTD Q++IF +++ Sbjct: 372 FDFQDMLRLVWESLDMDASQAIEDSLRARLRERYRYALIDEFQDTDELQWKIFGQLYLGG 431 Query: 402 --HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----YTLDTNWRSAPGMVN 455 P+ L +IGDPKQAIY+FRGAD++TY++AR V L N+RS +V Sbjct: 432 PDEPPPDNRLCIIGDPKQAIYSFRGADVYTYLEARERVQERGGQITNLVDNYRSTDALVR 491 Query: 456 SVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQ 515 + N +F+ F PV++A A + T + E + Sbjct: 492 AYNTVFA--SRYFSGEIRYDHPVRAATDLTACGPDGRAITPIRLLHVKPEQGKLRAEILR 549 Query: 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLE 575 + + AA++ L + D RPVRA D+ VL R+ +E+ +V D L Sbjct: 550 QALLERIAAEL-GLLLGDPAHAIAVGPPDAPRPVRAGDVFVLTRTTRESNEVADRLRQAG 608 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE 635 IP + ++ + +T EA+E+ +L + P R + A T G D+ L D Sbjct: 609 IPC-AIYKQEGLLQTREAREVRDVLCGIAEPRRRSARFQAWTTRFFGATLSDLPYLA-DL 666 Query: 636 HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ 695 + ++ + + + +++ I E L ER LT+ LHI ELL+ Sbjct: 667 PETHPFLARLYEWKALAERLEYETLFTSILGDSGIIERELFLESSERALTNFLHIFELLR 726 Query: 696 EAGTQLE-SEHALVRWLSQHILEPDSNASSQQM---RLESDKHLVQIVTIHKSKGLEYPL 751 E + H L+ L + I++ + + R+ES++ VQ++TIH+SKGLE + Sbjct: 727 EEVVRSRCDLHELIARLERWIVDTAEGTQADERNIQRMESEEAAVQVMTIHRSKGLEAKI 786 Query: 752 VWL-PFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 V+L + E YH+ + A + + E +E RL YVA+TR+V Sbjct: 787 VFLYGGFSAMPGDEVQVYHEGSERLVHVGGAARRDVAEAVRRESESESQRLYYVAITRAV 846 Query: 811 WHCSLGV--APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQ 868 L R G + + RL + + A I A Sbjct: 847 ARLYLPYVDPDDYRVSGAYGQVNRRLEDIVQRLRKGDDELSALFSLQRIAT--GTPPAPP 904 Query: 869 TAQTGDNQPWQVNDVSTAELNAK---TLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD 925 Q W+ A L R + VTSYS ++ + +L Sbjct: 905 VPLPRVLQTWRPPAKLLEPAPAALDYALARERRAGFVVTSYSAMKNAEPALYAELANADA 964 Query: 926 VD-----------------------------------------------------AAGVA 932 AG Sbjct: 965 RRVLAQGDAVANDTADADADADTDSDSASAASDSTAASAQAPAPMLFSDQSSGIGDAGAD 1024 Query: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVL-- 990 + P G G FLHS+ E L F + + + E S + ++ Sbjct: 1025 ESATGVRAAEDELPGGPQSGVFLHSVLEHLPFASLAEADGFDDWCERPEVASVFADLMLR 1084 Query: 991 -----------TEWITAVLQAPLNETGVSLSQLSA-RNKQVEMEFYLPISEPLIASQLDT 1038 + L PL + L++ E+EF PI + S Sbjct: 1085 HGRDPAHLRYSQRVVYQCLSTPLRVGRKIVPNLASCSENLRELEFVYPIPQLAPRSSDSA 1144 Query: 1039 LIRQFDPLSAGCPPLEFMQV-RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQA 1097 ++ + ++V RG +KG IDLVF+ +GR YL+D+KS+ L ++Y+ +A Sbjct: 1145 AAAAAQASASATTGRDPVRVERGYIKGIIDLVFQFQGRAYLIDWKSDIL----ASYSNRA 1200 Query: 1098 MAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV----DKEHPQQ 1153 +A + + Y LQ QLY LAL + L ++ + FGG++Y F+RG+ D E Sbjct: 1201 VARRVYST-YRLQAQLYALALVKMLGIE-SESQHRRRFGGLLYCFVRGMSTFADDEGRLP 1258 Query: 1154 GIYTTRPNAGLIALMDEMFAGM 1175 G+Y RP IA + AG Sbjct: 1259 GVYYARPRLDDIAAFERALAGQ 1280 >UniRef50_C9RQA8 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA8_FIBSS Length = 1266 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 270/1293 (20%), Positives = 491/1293 (37%), Gaps = 187/1293 (14%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTF 64 E + IEASAGTGKT+TI L + L+ L ++++L+VT+ Sbjct: 1 MENFSLNKFDPSQSLFIEASAGTGKTYTI-QLMVSKLIKL--------GTPLKKILIVTY 51 Query: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124 TE A EL+ RIR I E+ I + +D+ E A + +D A Sbjct: 52 TEKAAGELKDRIRKKIDEVLINRKIDKSDDS-------EEPLSDAKIALFTKAYQDVDNA 104 Query: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCY--------- 173 A+FTIH FCQ+ L A+++G F +I+D+ L + D W Sbjct: 105 AIFTIHSFCQKALKEFAYDAGRPFNMSMIDDKEVNDLIEKFIRDNWSEDEEFKALLVNAE 164 Query: 174 ------PLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA 227 +++ +KG +I + L+ + E + + + Sbjct: 165 KTSSLINKLKDLFTKAINVYKGKNDNGEEIIK-LESPSIEWGEDCISKEEAEALLEKDIV 223 Query: 228 RIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287 +++K+ ++E + + + IS ++ Sbjct: 224 DFESLKKF--KKFYSNVQILEKDENKDKIYYSEEISSGEKAISDLLNTIHTWDSSTKNPF 281 Query: 288 KFSQ--RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV--------ITRALAEIRE 337 ++ + + D + E I +L ++++ + + + E+ + Sbjct: 282 TPTKIGKNITDVPNDEFGNALKYVHERISKLSKIKEALQEELDSYPLKKFLFDHIPELFD 341 Query: 338 TVAREKRRRGELGFDDMLSRLDSAL--RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 + K F+DM+ + A+ +S+ L +R ++ A+IDEFQDT+ Q+ Sbjct: 342 EWQKYKTDMKAQSFNDMILSVHQAVLDKSKGESPLKTRLRAQYTYAIIDEFQDTNQLQWD 401 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVN 455 IF ++ + ++GDPKQ+IY+F+GAD+ Y KA +++ +L TN+RS G+++ Sbjct: 402 IFSAVFDK-----IFVVGDPKQSIYSFQGADVNVYQKAIQKINNGMSLKTNFRSTKGIID 456 Query: 456 SVNKLFSQT---DDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVG 512 N LF+ + + + F S K ++ + + + +W+ + + Sbjct: 457 GCNDLFNDSFFKPYEGSPKLVDFESSLSPDKEGQVKALPQINGKEVAPIWISQQNIDEID 516 Query: 513 DYQSTMAQVCAAQIRDW---LQAGQRGEALLMNG-DDARPVRASDISVLVRSRQEAAQVR 568 AQ +I +W + + R V D +VL R+R E ++ Sbjct: 517 -----FAQATVQKIVEWCSFVGDKTVLQVFDKKDCTKLRNVSFKDFAVLARTRSEMDEIE 571 Query: 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE----RENTLRSALATSMMGLN 624 DA+ +P + ++F + E E + L +A+ P+ L AL T ++ Sbjct: 572 DAMRAAGVPFSRYKD-SNLFSSRECTEWIALFKAIDAPDFSAWNRRLLSEALITDFFRIS 630 Query: 625 ALDIETLNND--EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER 682 +IE + ++ + + V ++ + + ++ +KR ML + S I E L + Sbjct: 631 YQEIEYVESEAFDDPENPVRKKINSWHELVQKRRYAEMLERIYSDTQIEERLTEIS---- 686 Query: 683 RLTDILHISEL----LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLE--SDKHLV 736 +L ++ + ++ ++ S LVR L +E +D V Sbjct: 687 KLQNLAKLRQIGNYAVEYLYNHNCSIEDLVRHLEALASYNAGTDDEDGNLIEKSTDYDAV 746 Query: 737 QIVTIHKSKGLEYPLVW-LPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERL 795 QI+TIH SKGLE+P+V + + + E + L + E L Sbjct: 747 QIMTIHASKGLEFPIVISVAGFKQKIKTDSGPFLYHDKDE--IRLGFGSIAKKRRAQEEL 804 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA---- 851 E RL YV TR+ L + + K + +S++ L++ E +D+ Sbjct: 805 EEWKRLFYVDFTRASSILILPRYEKWYGKDNVKEEFKFLESSINELIKADEKRDSDKKLT 864 Query: 852 ---GLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTL-----------QRLP 897 E D N+ V T+E A+ + ++L Sbjct: 865 TVLPKLEKWEPKKLSDDVKTKILKPLNEKSGAGAVLTSEEIAQNIAQQKINMASLQKKLA 924 Query: 898 GDNWRVTSYSGLQ-QRGHGIAQDLMPRLDVDAAGVASVVEEP------------------ 938 G + SYS L + I D R D D + Sbjct: 925 GASIMQHSYSTLSGKADSQIESDDGNRPDRDDEEKTAAKTSTVKIRDIDTEAKNCTTAFN 984 Query: 939 ---------TLTPHQFPRGASPGTFLHSLFEDLDFTQ-------------------PVDP 970 T +FPRG+ G LH +FE+ F Q ++ Sbjct: 985 PKLNYQTNLNETAKKFPRGSHAGNALHRIFENTKFKQFGEENSTFEQALANPKTINLIEE 1044 Query: 971 NWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--------TGVSLSQLSARNKQVEME 1022 + RE L + W + T + L A L E +L+ + + E++ Sbjct: 1045 EFKRESLPIWNHREAWLDIATHYTWNTLNARLPEIAGSTTTSETFALTDIPENDHMPEVQ 1104 Query: 1023 FYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH---EGRYY-L 1078 F SE + D A +R KGFIDL+F +YY + Sbjct: 1105 FNQDASE------------ETDENQAISETSASDILRRFCKGFIDLLFVRTVNSQKYYSI 1152 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRH--------RIADY- 1129 LD+KS+ L + YT +A+ + + Y +Q LY+ L ++L+ +++ Sbjct: 1153 LDWKSDMLENNV--YTPEALKEKV-DNDYSIQRVLYSYCLIQWLKQFYGKGTTENLSEAE 1209 Query: 1130 DYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 +E HFGG+ Y F+RG + P +GIY N+ Sbjct: 1210 IFEKHFGGIYYAFIRGTEGGTP-KGIYAQTWNS 1241 >UniRef50_A8SJB2 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJB2_9FIRM Length = 1261 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 200/1314 (15%), Positives = 428/1314 (32%), Gaps = 255/1314 (19%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + L+L P+ + +LLVVTFT+ A +E+R R Sbjct: 18 NTNLLVSAAAGSGKTAVLIERIIELVLDE------KNPIDINKLLVVTFTKLAASEMRER 71 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 + I + ++ Q + L + A + TI FC+ Sbjct: 72 VSKAIEKKL---------------------EENQENEHLQKQLLLLSGADITTIDSFCKD 110 Query: 136 MLNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPREIAQVVFETWKG---- 189 +L A + ++I+ + +L + + + ++V K Sbjct: 111 VLISYAHLVNLDSNIKIIDPSENEVLAKEVMQELFEELYENNDDSFLRLVDWYAKKNTDE 170 Query: 190 ------------------PQALLRD---------------INRYLQGEAPVIKAPPPDDE 216 P L + + Y+ A + E Sbjct: 171 GLLQLLLNVNNFVNSHPFPNIWLNEKAEFFNTNTKDGDFYLENYILDIAKDVDMDLEFFE 230 Query: 217 TLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 + + + +++ LDAL + +KF + N KIS Sbjct: 231 LSIKNNLKKIEDYPELEKYVNMYNDLLDAL-SVVKENLKKFLKDNTKFEELKISTNEFLR 289 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD---------LV 327 N S + + ++ K ++ + + E++ L + +I+ Sbjct: 290 LNFGSFRISKCDEEVKEIYNKVKKELDSIKSEISESLKTLNLDLENIKKESDLIYPYVRS 349 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVA 381 I+ + + +E K++ + F D+ L A + ++ Sbjct: 350 ISDVVIKFKEKFWERKQKFNYVDFADIEHLALEILVDIDVDGNIKPSKTALEYQEKYSEV 409 Query: 382 MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV---- 437 IDE+QD++ Q + + E ++GD KQ+IY FR AD +M+ Sbjct: 410 FIDEYQDSNLVQEILLSAVA---KENNRFMVGDVKQSIYRFRQADPSIFMEKYENYYRVE 466 Query: 438 ------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVF 491 + L N+RS ++ N +FS+ + + Sbjct: 467 EDIESFNRKIMLYANFRSRKEILEGTNLVFSKIMKKETGELDYTVDERLNPMASFKE--S 524 Query: 492 KGETQPAMKMWLMEGESCGVGDYQSTMAQV-----------------CAAQIRDWLQA-G 533 A+++ L++ S + + + A I + + Sbjct: 525 DENVGGAVEILLVDENSDSEDEDEIILTDEYSEDFEEMKSFKLECIKIANTIYNMMNNKE 584 Query: 534 QRGEALLMNGDDARPVRASDISVLVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 + N DD R V DI +L+RS + + IP +Y + F+T E Sbjct: 585 NPFKVYDKNLDDYRKVEYKDIVILMRSPSSNTKILEEVFLEYNIP-IYAESTGGYFDTFE 643 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWDVVVEEFDG-- 647 ++ LL+ + P ++ L S + + + + ++ + + ++++++ + Sbjct: 644 VDTIINLLKIIDNPMQDIPLISVMYSPIYNFTSKELSEIRLVDRELKFYELLIKILEDED 703 Query: 648 --------------------YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI 687 + + ++ L + GE+R T++ Sbjct: 704 IEIRISLKEKISKFIYDLKLFIEKKSLVSADELIWFLYKYTGYYNYVGLLDMGEQRKTNL 763 Query: 688 LHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 + + E + V ++ + L+ D + + + D ++V+I++IHKSKG Sbjct: 764 MLLFEKAKNYEKNSYKGLFNFVNYIQKISLKSDIS---EAKLISEDANVVKIMSIHKSKG 820 Query: 747 LEYPLVWLPFITNFRV----QEQAFYHDRHSFEAVLD---------LNAAPESVDLAEAE 793 LE+P+V+L H + F AV+ + + E Sbjct: 821 LEFPIVFLANTNKKFNFRADDSNLVLHQKLGFGAVVYDMDKKTSFNSIMKKKIEKFKKNE 880 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT--------------------DV 833 ++AE++RLLYVA+TR+ + ++ + D Sbjct: 881 QIAEEMRLLYVAMTRAKEKLIITGRVKDYENLREEISSGIDERGNISNYKILKINNYLDW 940 Query: 834 HQSALGRLLQKGEPQDAAGLRT----------------------CIEALCDDDIAWQTAQ 871 S++ L G + G + + + ++ + Sbjct: 941 ILSSINNLTVYGTSLNCLGRKENFLGNEDLKFQLNVNTKTEEFIEYQRIKEEIKTNEIIL 1000 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ-QRGHGIAQDLMPRLDVDAAG 930 DN + + E + + S + + Q+ Sbjct: 1001 DEDNIEVKQEMRTVKEFLEDRFNKEYVYKNVLNKPSSITVSEIKKMIQEEDEEKHQKYYK 1060 Query: 931 VASVVEEPTLTPHQFPR----GASPGTFLHSLFEDLDFTQPVDPNW--VREKLELGGFE- 983 V++ P+ + A GT H + LDF++ + +RE+++ Sbjct: 1061 ENFVLKTPSFIHQGEEKVGFNSAEKGTIFHLAMQLLDFSKFDTEDVSKIREEIKSQINSF 1120 Query: 984 --------SQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 + E + WI +++ + + ++ K+ +++ + + Sbjct: 1121 VEKNIMSLDEIETININWIVKFIKSDIFKEIYIANKFGKLFKEKAIDYNIKLKNLFKDEN 1180 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFR-HEGRYYLLDYKSNWLGEDSSAYT 1094 ++ + M+ G IDL F G LLDYK++++ T Sbjct: 1181 IEEY------------------EKIMVVGIIDLFFENENGEIILLDYKTDYV-------T 1215 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK 1148 ++ + RY +Q LY A+ ++ +YLF G+++ Sbjct: 1216 KENLEE--VKARYKVQLDLYKSAIEDISGKKVTKKG--------LYLF--GINE 1257 >UniRef50_Q04AN7 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus RepID=ADDA_LACDB Length = 1227 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 194/1259 (15%), Positives = 409/1259 (32%), Gaps = 194/1259 (15%) Query: 1 MSDVAETLDPLRLPLQGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + +G+ L+ ASAG+GKT + +R ++ L V +L Sbjct: 1 MAVKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDH--------LEVNQL 52 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAER 119 LV+TFT AA +E++ RI+ + + + + L Sbjct: 53 LVITFTRAAASEMKQRIKQRLQDRLQEETDASQADF------------------LRRQLA 94 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE---SLLRYQACADFWRRHCYPLP 176 ++D A + TI FC ++ F + + ++ D LL+ +A D + Sbjct: 95 EIDTAIISTIDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNED 154 Query: 177 REIAQVVFETWKGP--QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT--- 231 + + + L A P L A Sbjct: 155 QAKKDRFLALYDAFAGDSNANSARDLLFDLYQFAMARPNYRAWLQKLAAPYQLETSDVVD 214 Query: 232 -----------VKQQWRDAVGELDALIESSGIDRRKFNR-------------SNQAKWID 267 +++++ + +L AL+ + D KF + S + Sbjct: 215 STLWQEKIKPYLEEEFSNLADKLTALMAEADFDHEKFAKYQPAFTAFATSLASYRESLAT 274 Query: 268 KISAWAEEETNSYQLPESLEKFSQRFLE--DRTKAGGETPRHPLFEAIDQLLAEPLSIRD 325 + E + + + ++ + + K E + +F A + + Sbjct: 275 DDPFDRQRELLAACQFDGTLRTNKEIADFVEEAKEVKEAGKQLVFNVYTSFYASSNADQH 334 Query: 326 LVITRALA----------EIRETVAREKRRRGELGFDDMLSRLDSALRSE--SGEVLAAA 373 ++ + + KR L F DM L + + ++ A Sbjct: 335 ALLAKGAEIASAAAEVELAFIDRFNELKRADRVLDFSDMEQLAYEILTQDSSNSDLARAY 394 Query: 374 IRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKA 433 ++RF M+DE+QDT+ Q + +R+ + L ++GD KQ+IY FR A+ ++ Sbjct: 395 YQSRFKEIMVDEYQDTNALQDGLIQRL-KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAK 453 Query: 434 RSEVH-------AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486 E N+RS+ + +VN +F F I + Sbjct: 454 YDEYGQENSAGKQRIIFAENFRSSQPVTQAVNLIFDSLLTKD-FGGIDYQKEGQLKFAAG 512 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 T+ + + G+ + ++I+ + + Sbjct: 513 YDPEAALPTETEVLYQEDSSATDDDGELNQGDLAMVISRIQKLIAD--QTPIFDPKTGQT 570 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 RPV DI++L RS+ ++ +P +++ + + F+T E ++ L+ + P Sbjct: 571 RPVSYGDIAILTRSKTSNLDIKQEFDRYGVP-LFVMDVQNYFQTFELTVIMSYLKIIDNP 629 Query: 607 ERENTLRSALATSMMGLNALDIETLN---NDEHAWDVV-----------------VEEFD 646 +++ L + L + + ++ D+ + + + + + Sbjct: 630 DQDIPLVAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQ 689 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEH 705 R + +L + + E + A G++R ++ + E + + + Sbjct: 690 DLRDFSLSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLY 749 Query: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 + ++++ + +Q + E+ + V+++TIH SKGLE+P+V++ + + +Q Sbjct: 750 QFINFIARMR--KNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQ 807 Query: 766 ---------------AFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810 +F + E D A + + L E+ RLLYVALTR+ Sbjct: 808 DITGSYVLDASGLGLSFAYPFDEAEYRADTLANAWLKIAKKKKLLEEEARLLYVALTRAK 867 Query: 811 WHCSLGV-----APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD--- 862 L A ++K ++ L L + + L + Sbjct: 868 QKLILAANIKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKR 927 Query: 863 ---------------------DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR------ 895 D AQ D++ + E A ++ Sbjct: 928 LGEKAVSDLATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYT 987 Query: 896 ------LPGDNWRVTSY---SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF- 945 D R T+Y S +++ +D + + A+ +P T F Sbjct: 988 FSQGGYPYLDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFL 1047 Query: 946 ----PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAP 1001 A GT H + + D+ + D + + + + + L + + Sbjct: 1048 FQNTVSSAELGTASHLVLQYYDYAK-GDKDAIDSCIAGLVEKGRLSQTLASMLDREALSW 1106 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 ++ + +FY T++ + + Sbjct: 1107 FVKSDFA------------KDFYQQPDRLHREENFATILSPKTLFKDFSDF----PGKIL 1150 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 + G ID + E L DYK++ + Q + +Y Q +LY AL+ Sbjct: 1151 VHGTIDGYYEAENGIILFDYKTDHVNPRKQDEAIQKL-----KEKYQGQLRLYERALNE 1204 >UniRef50_B1C9D6 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D6_9FIRM Length = 1171 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 191/1239 (15%), Positives = 416/1239 (33%), Gaps = 184/1239 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ D + LI A AG GKT + +RL+L +++ L Sbjct: 1 MNWTKSQSDAINTD-NKNLLISAGAGCGKTAILTNRIIRLML--------EEKTDIDKFL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT AA + ++ +IR ++ +I +K ++L Sbjct: 52 VVTFTNAAASGMKEKIRKLLYS--------------------KIKEKNNDKRYLFDQISN 91 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 +++A + T+H FC ++ + ++I+ + L +A + ++ Sbjct: 92 LEKANISTLHSFCISVIREYYHLVDVDPAFKIIDSTNANILMDEAFDMLFEDRYKKEDKD 151 Query: 179 IAQVVFETWKGPQA-----LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA--RIDT 231 +L++I ++ K + I ID Sbjct: 152 FINTSISYSFNADEEEFKNILKEIYFFIYNRPNPFKWLREKVDLFNDDFNDIENSMFIDI 211 Query: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL--------- 282 +K + + + ++ ++ I + + T + + Sbjct: 212 IKDKINGYLSLALNYSSKAKDKAIRYEANDDLLEILNMDLDGLKNTQNLLINNLEKFITL 271 Query: 283 --PESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA-------------EPLSIRDLV 327 + ++F L+ KA + R+ + + + L L Sbjct: 272 KPADIFKRFKAGGLKGEEKAEVQNLRNESKDILKKALNILTFNYKDIIDVVHELYPHMKT 331 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQ 387 I +A+ + + K +G L F D L E I ++F +DE+Q Sbjct: 332 IEQAIIDFDAYYSHLKSEKGVLEFKDTEHLCLKILEDEKA---REEILSKFDYVFVDEYQ 388 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH------AHY 441 DT+ Q I ++ E L +GD KQ+IY FR A+ ++ Sbjct: 389 DTNLVQEAIINKVI---KENNLFTVGDVKQSIYRFRQAEPEIFLDRIKNYKKDEKINKTV 445 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKM 501 ++TN+R+ ++ +N LF + + + +N+ L E + +++ Sbjct: 446 YMNTNFRTNKNIITGINTLFEKIMSKKTGK-------INYDENERLIAGRDEEIESKIEV 498 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQ-----IRDWLQAGQRGEALLMNGDDARPVRASDISV 556 L+ ++ GV + S ++++ + I + + + R V+ SDI + Sbjct: 499 HLINKDTAGVDSFDSELSELSTEENEITYIALMINNLIGTDIYDPELKEYRKVKFSDICI 558 Query: 557 LVRS-RQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615 L RS V++ IP V F+TLE + + L + + + TL S Sbjct: 559 LHRSANTRIKNVKEIFNKYSIP-VTSEKEIEYFKTLEIETIKDFLSIINNFKDDITLLSV 617 Query: 616 LATSMMGLNALDIETLN---NDEHAWDVV--------------------VEEFDGYRQIW 652 + + + ++ + + H + + ++ + Y Sbjct: 618 MRSPIFNFTVDELLEIKISTRESHYYKSIMSFINKENVNITLKDKVKNMLKVINDYSDRS 677 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWL 711 V ++ + NI + + A G R+ ++ + + E + + ++ Sbjct: 678 LYTSVPDLISNIYEETNIMDYMSALPFGNIRVNNMKTLLIKANEYESFSNEGLYGFINFM 737 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV----QEQAF 767 ++ +S E ++ V ++IHKSKGLE+P+V L ++ Sbjct: 738 DYAKIQSESG----YAFSEDSENSVNFMSIHKSKGLEFPIVILMGCHKMFNMLDTKKPIM 793 Query: 768 YHDRHSFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 + L D + + E L+E++RLLYVALTR+ L Sbjct: 794 LNKDLGICPSLIDLDNKYKVDSIFKICAKIVENNEILSEEMRLLYVALTRAKEKLILTAY 853 Query: 819 PLVRRR-------GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 ++ + S L ++Q P I ++ I + Sbjct: 854 SKDTKKLIDNLPSNITPYSVEFSNSYLEWIMQGILPNKIYEEENNIIYEDNNFIVYNNKI 913 Query: 872 TGDNQPWQVNDVSTAE----LNAKTLQRLPGD---NWRVTSYSGLQQRGHGIAQDLMPRL 924 + ++ + L+ K + ++ D ++ + + ++ + + L Sbjct: 914 EDLLTELSTSYINQKDDDFYLDDKIINKIKDDLNFKYKNIVNTTIPRKAGVSSLKNVDLL 973 Query: 925 DVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFE- 983 +V + A G +H +FE +D + ++ +++ E Sbjct: 974 EVGNNVINLSEAPKFKQEKSVLSSAEKGNIIHFIFEIIDIDKLKKTENIKAEIDTQIREF 1033 Query: 984 --------SQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 + + + +I + + + + ++ E+ F L + I+ + Sbjct: 1034 INKKMIKQEEVDNIDINYIYNFFDSNIGKEL-----IHSKKIYRELPFNLALKAKDISEK 1088 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYT 1094 + + +++G IDL F +G L+DYK+N Y Sbjct: 1089 -----------------WKDSEEEILVQGIIDLTFETKDGAMILVDYKTNH-------YN 1124 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYE 1132 ++ + ++Q Y A+ + + Y Y Sbjct: 1125 NESEKKELLKGF-EIQLNYYKRAISTLMNKNVKHSYIYF 1162 >UniRef50_C5RAZ6 ATP-dependent deoxyribonuclease, subunit A n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAZ6_WEIPA Length = 1269 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 203/1300 (15%), Positives = 404/1300 (31%), Gaps = 268/1300 (20%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + ++ LL V E L+VTFTEAA +E++ R+ Sbjct: 16 RNVLVSASAGSGKTRVLVERVMQRLL---------AGENVNEFLIVTFTEAAASEMKERL 66 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 I IA + E Q LL R ++ A + T+H F R+ Sbjct: 67 EGAIRSELIASVGEQ-------------------RQHLLKQLRLLNIANISTLHAFALRL 107 Query: 137 LNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIA----QVVFETWKGP 190 + + + + +L++D L+ + + A F T Sbjct: 108 IEQYHYTIDLDPQFRLMDDAERTLVMLEVYNTLLEEQYANDNEQHAFATFAAQFTTSTTD 167 Query: 191 QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI--- 247 L++ L A + L+ + + + ++ + Sbjct: 168 DRALQEATFSLYDFATARPDAVNWLDHLSDLYQVDQEDFTSSQFYQAQLKPQILKELQGI 227 Query: 248 ----------------ESSGIDRR---KFNRSNQAKWIDKISAWAEEETNSYQLPESLEK 288 E+ ++R + + + + + + A + Q + ++ Sbjct: 228 VDRSAVLVAQAPDTMDEAPAVNRLLNLQADETAYQQALTLVQNEANDWNTVQQTIKHIDL 287 Query: 289 FSQRFLEDRTKAGGETPRHPLFE-AIDQLLAEPLSIRDLV-------------------- 327 S + P + A D++ E +++ Sbjct: 288 MSWGVDTQGKRKNFTKKHDPELKIAWDRVKDEREALKKRFTIVLEKYFVLDQAGLVLAIQ 347 Query: 328 --------ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFP 379 + + + EK RR L F+D+ + E + A ++ R+ Sbjct: 348 GAGRVIDRLVKLTKDFSTDFLTEKLRRKVLDFNDLEHFALQIVSQE---KVKAELQERYT 404 Query: 380 VAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH- 438 M+DE+QDT+ Q I I L +GD KQ+IY FR AD + + Sbjct: 405 EIMVDEYQDTNQLQEAILHEITSGD---NLFQVGDIKQSIYKFRQADPTLFAGKLATYPS 461 Query: 439 ----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGE 494 TL N+RS P + N +N +F+Q + + + Sbjct: 462 DTISEVITLQENFRSQPNVTNFINYIFAQAMSRSLGDIEYTGEAELVAGADYYPEELPKK 521 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAA----------------QIRDWLQAGQRGEA 538 + + + + A A+ +I++ +Q+ + E Sbjct: 522 AELLLYLDDANQDESPADAEVDAEADTLASDAPYTKATGQIRLTALKIQELMQS--KFEI 579 Query: 539 LLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLW 598 RPV DI++LV ++ + V D + IP + + ++ F+T E ++ Sbjct: 580 FDRQAQKKRPVNYGDITILVPTKGQNLDVLDVFREMNIP-IMIDGTENYFQTTEISVIMS 638 Query: 599 LLQAVMTPERENTLRSALATSMMGLNALDIETLNND------------------------ 634 LQ + P ++ L + L + + + + + Sbjct: 639 FLQVIDNPHQDIPLVAVLRSPLYDIGENGLALIRAQTPEEDFYTAVKNLANDDEIDTIGD 698 Query: 635 ---------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 + + + +R + + ++ +L A+ + + + G +R Sbjct: 699 ISPALVKNTQTQVQRFLADLAVFRDLAVQNQIVTLLWAIYNRTGWLDYVGGLPSGAQRQA 758 Query: 686 DILHISELL-QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKS 744 ++ + + + + + +++Q + + V ++TIH S Sbjct: 759 NLHALYDRASAYQKSSFVGLYQFINYVTQLQSHDKDLGEADANV---AQDSVSLMTIHHS 815 Query: 745 KGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAVLDLNAAPESV----------DLA 790 KGLE+P+V+L T R + + D + + ++ + Sbjct: 816 KGLEFPIVFLLNATRTMISQRETQGSIILDAQAGGGMNYVDLQHHLKLITPQHEYIAQVK 875 Query: 791 EAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS-------------- 836 AE LR+LYVALTR+ + A + + + Sbjct: 876 RQNAYAEQLRVLYVALTRAEQQLFIVGAYDNVDKLWQTWQQSAGVTEWMLPDTVRLAGKS 935 Query: 837 ---ALGRLL--QKGEPQDAAGLRT-----------------------CIEALCDDDIA-- 866 LG L P+ A LR +E + D+ Sbjct: 936 FMDLLGMTLIRHPQAPEQFAPLRGYDVNDVMQFDEIRTKTPKNAFAFDLEVINTQDLVNR 995 Query: 867 ---WQTAQTGDNQPWQVNDVSTAE----LNAKTLQRLPGDNWRVTSY---SGLQQRGHGI 916 +Q V + S E + R T+Y S +++ Sbjct: 996 VANYQPLSDDIVDTKDVTETSAEENTDWQSVLQFAYPYETATRATAYQSVSEIKRLFEDP 1055 Query: 917 ---------AQDLMPRLDVDAAGVASVVEEPTLTPHQFPR--GASPGTFLHSLFEDLDFT 965 + L+ + EP R A+ GT H + + LD T Sbjct: 1056 DLAEGRQLLDRRLVTDDLAGLRMTDEELPEPDFMQESATRLSSAAIGTATHLVMQRLDLT 1115 Query: 966 QPVDPNWVREKLELGGFESQWEP------VLTEWITAVLQ-APLNETGVSLSQLSARNKQ 1018 + V V L + + I +PL + + + + + Sbjct: 1116 KGVPTEVVIRTLIQQLVNEKLIDDKIAPLISVAKIGRFFNDSPLGKQMIQHAD----SLR 1171 Query: 1019 VEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078 E+ F L + + D + ++ G ID F+ + +L Sbjct: 1172 REVPFSLLLDAKRLYRAFD------------------GDDKVLVHGIIDGYFQVDDEIWL 1213 Query: 1079 LDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 DYK++ + + ++ + RY Q +Y AL Sbjct: 1214 FDYKTDHVSQQAA--------TNILTKRYAGQLNIYAQAL 1245 >UniRef50_B2GEY4 ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus fermentum RepID=ADDA_LACF3 Length = 1337 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 217/1358 (15%), Positives = 422/1358 (31%), Gaps = 293/1358 (21%) Query: 5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLL-LGLGGSAAFPRPLTVEELLVVT 63 ++ +P Q + L+ ASAG+GKT + ++L+ GL A ++++L+VT Sbjct: 6 SKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILMVT 65 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FT A +R RIR + D+ AQ LA Sbjct: 66 FTTDAAKNMRDRIRRRLVGA---------------------TDEHMKAQVARLAL----- 99 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPR--EI 179 A + TIH FC++++ + + + +LI+D L+ QA + + Sbjct: 100 ANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQATLDDWVANPDQVGAL 159 Query: 180 AQVVFETWKG------------------PQALLRDINRYLQGEA-PVIKAPPPDDETLAS 220 Q++ G P L ++ Q E + L Sbjct: 160 HQLIDNFGAGNLESVVQALDTEADAQPHPSDWLAGLSGLYQFEEGADPRQSAFFKRLLEP 219 Query: 221 RHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280 + + + A + + +Q + + A+ Sbjct: 220 LVGPQLKELRDQWAALGEVGPARFAEQVEEDLAKLATTVDDQGHLLGSWDSLAQTLNKKN 279 Query: 281 QLPESLEKFSQRFLEDRTKAG----------GETPRHPLFEAIDQLLA--EPLSIRDLVI 328 P+ ++ E + G G+ F++ L+ + ++ Sbjct: 280 FAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQSAADLVKYGQKAGALIEIL 339 Query: 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES------------------GEVL 370 TR + R K+ R L F D+ + L E+ + Sbjct: 340 TRVATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINPKVTWSDEEARAKRQAAAQV 399 Query: 371 AAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY 430 A ++ + MIDE+QDT+ R+ H + ++GD KQ+IY FR AD + Sbjct: 400 QAELQRHYKEIMIDEYQDTNRL-QDDLLRLLHKSGQNHRFMVGDMKQSIYRFRQADPTLF 458 Query: 431 MKARSEV------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 484 + L N+RS + + VN +F Q D + + K++ K Sbjct: 459 KDYYDQFSADGQSSEALDLSDNYRSRHEVTDLVNLIFEQLMDQQLGEMV--YDDKASLKP 516 Query: 485 QALRFVFKGETQPAMKMWLMEGESCGV----------------GDYQSTMAQVCAAQIRD 528 +A + + PA L+ D ++ + +IR+ Sbjct: 517 KADWGADRDQASPATPELLLFDGGVKKTTANPTGEDAIVVRQPEDKVASEVWLIGQRIRE 576 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 L + L RP+ DI++L R+++ + + + L +P V + ++ F Sbjct: 577 LLA---KETILDPETKRVRPITPGDIAILSRAKRIHSVIAEQFAKLNLP-VMVHGVENYF 632 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSM-------------------MGLNALDIE 629 + E + ++ LL+ + P ++ L + L + + +G ++ Sbjct: 633 KATEIRVVMSLLKVIDNPYQDVPLAAVLRSPLIQVAPEVAAKFGLSQGENRIGFTEPELA 692 Query: 630 TL-----------------------------NNDEHAWDVVVEE---------------- 644 L N+D + + E Sbjct: 693 YLKVNSTSKDFFGVVQQNYYAWRDQEVEAVENHDALTEEELAERVAGDPAGLATKEELGV 752 Query: 645 -----------FDGYRQIWR----KRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 F R R +R ++ ++ + A + + +GG +R ++ Sbjct: 753 NCGLIYLKLARFFELRDHLRRVAQRRPLVDLIWTIYQATGYLDYVGGMSGGPQRQANLHA 812 Query: 690 ISELLQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + E + + + + ++ Q + D + + ++TIHKSKGL+ Sbjct: 813 LYERASGYEESGFKGLYQFIHFIEQMQKKNDDLGEATTALAG---DAINVMTIHKSKGLQ 869 Query: 749 YPLVWLPFITNFRVQEQAFYHDRHSFEAVL---------------DLNAAPESVDLAEAE 793 +P+V+L T+ ++ L + + + Sbjct: 870 FPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVDSTANETMRVKHPLVQQAALKEKKKRQ 929 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 AE++RLLYVALTR+ + K + + LL + Sbjct: 930 DRAEEMRLLYVALTRAEQRLFITGYVKDADLTKKMDKWNRAFDSASPLLTTTTRLKGQSM 989 Query: 854 RTCI--------------------------------EALCDDDIAWQTAQTGDNQPWQVN 881 I + + Q A Sbjct: 990 LDWIMMTLVRTANFPTLREGVEAAATPLRGLTKAAYQIKLQNADQVQAALNTPLDLHPNA 1049 Query: 882 DVSTAELNAKTLQRLPGDNWRVTSYSG--------LQQRGHGIAQDLMPRLDV------- 926 A A T ++ D RV +++ + ++ R D Sbjct: 1050 TAEQATPAAATSRQFKADLERVLNFTYPDQVATQTTAFQAVSTVREAFARQDPTNLEMGR 1109 Query: 927 ---------DAAGVASVVEEPTLTPH-------QFPRGASPGTFLHSLFEDLDFTQPVDP 970 +A + E P Q P G + GT H +F+ L T+P+D Sbjct: 1110 LEIDRDQIKEAGAYLAPEERAFENPAFITGASDQEPTGTAIGTATHLVFQKLPLTEPLDE 1169 Query: 971 NWVREKLELGGFESQWE-PVLTEWITAVLQAPLNETGV-SLSQLSARNKQVEMEFYLPIS 1028 VR ++ + P + I +TG+ + E+ F + +S Sbjct: 1170 GAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFYQTGLGQVITAHPEQVHREVPFSMLLS 1229 Query: 1029 EPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088 + S + ++ G ID +H+ + L DYK++ + + Sbjct: 1230 AHDLFSGIGA----------------TDDSEVLIHGIIDGYVQHDDQIDLFDYKTDRISQ 1273 Query: 1089 DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRI 1126 Q +A +Y Q LY AL + + Sbjct: 1274 AHPEEDLQELAD-----KYSGQLVLYADALTKMTGVPL 1306 >UniRef50_A5GUA0 Exodeoxyribonuclease V beta chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GUA0_SYNR3 Length = 1189 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 289/1193 (24%), Positives = 483/1193 (40%), Gaps = 90/1193 (7%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 + E LD G ++EASAGTGKT+ ++ LR ++++LVVT Sbjct: 1 MIEPLDLNGPLTGGTVVLEASAGTGKTYALSHRVLR--------EVGENGRAIDQILVVT 52 Query: 64 FTEAATAELRGRIRSNIHEL------RIACLRETTDNPLYERLLEEIDDKAQAAQWLLLA 117 FT AA AE+R RIR+ + E R+A +P + L+ Q + LL Sbjct: 53 FTRAAAAEIRRRIRTRLEEASTVLAYRLANDNRLASDPTLDELISRWAASPQGVEVLLNL 112 Query: 118 ERQMDE---AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYP 174 + +D A + TIHGF QR++ N G+ +++L E L + D+ R P Sbjct: 113 LQAIDRIDLAPITTIHGFIQRLIQDNGTLLGLDPQRRLREGGRSLLQELVNDWRRSVLSP 172 Query: 175 LPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDD-----ETLASRHAQIVARI 229 P V L + + + + ++ P D + RH + + Sbjct: 173 APAPWQAWVQSHSDLSLDGLMKLAQLVDDDRDMLLPEPLDTGATAVDGWQQRHERFERLL 232 Query: 230 DTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF 289 + +A+ +L + ++ A+ + + A A + + + ++ F Sbjct: 233 ASDGISTGEAMQQLCKGTGNKSPAGALLGKTKLAQ-LPDLIAIARDRNDIKTYRKLVQAF 291 Query: 290 SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEL 349 S L+ + P L A +QL EP+ + ++T + +R+ + ++ + E+ Sbjct: 292 STSQLKRVLADPDQAPSSGLHRAAEQLCFEPI---EQLLTDLVHALRQGAWQRRQLKQEM 348 Query: 350 GFDDMLSRLDSALRSESGEVLAAAIRTR-FPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 F D+L R+D A S R + +IDEFQDTDP Q+R+F ++ + Sbjct: 349 SFGDLLERVDPARLSPPVLAGLKQWRQQQLSCCLIDEFQDTDPIQWRLFAALFDGEAP-- 406 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 L LIGDPKQAIY FRG DI TY A S ++LDTN RS P +++ +N+LF+ + + Sbjct: 407 LTLIGDPKQAIYRFRGGDIRTYRSAVSTPERQRFSLDTNRRSDPALLSVLNRLFAG-EGS 465 Query: 468 FMFREIPFIPVKSAGKNQALRFV-FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 F I + V++ R G P ++M + G + ++ Sbjct: 466 FGSPTIDYRMVQAPEHASPSRLRCADGSPAPPVRMRWLGEADGGKPLKLGELRDSLPQRV 525 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 D LQ L GD R + D++VLV +EA ++ L IP+ D Sbjct: 526 CDDLQRTLSSGMELQQGDGWRALHPGDLAVLVGRNREAVALQRELQRRGIPARIGRGGD- 584 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 ++++ EA + L++ + +S+ G A ++ + W +++ + Sbjct: 585 LWQSPEAASLSLWLESSERQGDRRAAAALALSSVGGFLAAELSGWS--PSDWGAWLQQLE 642 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE--AGTQLESE 704 RQ + G + L + +A L A GE+RL+D ++ELLQ+ S Sbjct: 643 QARQRYALVGPLAALEVVQAAGPGLPRLRGQANGEQRLSDRRQMAELLQQSWQDQGRPSA 702 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT----NF 760 L+ WL++ L +QQ + S+ +V + T+H SKGLE+PLVW P + Sbjct: 703 ARLLHWLNEQQLFGGEGEDAQQRIVASES-MVTLTTLHSSKGLEFPLVWCPTLWEVDGGV 761 Query: 761 RVQEQAFYHDRHSFEAVLDL------NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 + D VL+L + E + A E E LRL YVALTR+ Sbjct: 762 DAEAPFRAWDPSQQRRVLELSRRSGSSPRAERLMEARLEGWQERLRLGYVALTRAKHQLC 821 Query: 815 LGVAPLVRRRGDKKGD-----TDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD-DIAWQ 868 L + ++ A+ LR ++ CD+ I + Sbjct: 822 LDWGRIKDSGASLPAWLLHPELRQQEAEQPWQAIADHISRASDLRQALQHRCDELGIHLE 881 Query: 869 TAQTGDNQPWQVNDVSTAELNAKT--LQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDV 926 ++ + A R P +W SYS L + ++ Sbjct: 882 DLNPEAPPAYRPAANTQPLAAAAAMIPPRRPFSSWGRWSYSRLHDQSQTLSPSAREEEGF 941 Query: 927 DAAGVASVVEEPTLT---PHQFPRGASPGTFLHSLFEDLDFTQ----PVDPNWVREKLEL 979 D +S + + P GAS GT +H++ E LDF P VR+++ Sbjct: 942 DPDRESSPEDPGGAEDPCWRELPGGASFGTLVHAILEQLDFEADLSSPEVRQLVRDEVAR 1001 Query: 980 GGFESQWEPVLTEWITAVLQAPLNET--GVSLSQLSARNKQVEMEFYLPISE-------P 1030 G + Q L I +LQ PL L+Q+++ + E+ F +P+S Sbjct: 1002 SGLDPQLSNSLLGAIEVLLQRPLGGPLGDCQLNQIASGDTLRELPFDIPLSGFSASPSSD 1061 Query: 1031 LIASQLDTLIRQFDP-----LSAGCPPLEFMQVRGMLKGFIDLVFRHEGR-----YYLLD 1080 ++ L+ L DP + G L G IDL+ R R + +LD Sbjct: 1062 VLGEALEQLAAHHDPVVQSYARERLQQRQAQLSSGFLNGVIDLIIRRPSRDGTQHWVVLD 1121 Query: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 1133 +K+N L + + M A Y LQ QLY A+ R+L R+ + Sbjct: 1122 WKTNRL--------VRPINDLMAAKDYWLQAQLYRQAVQRWLHWRLGEETPVR 1166 >UniRef50_B0PD60 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PD60_9FIRM Length = 1174 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 225/1235 (18%), Positives = 397/1235 (32%), Gaps = 187/1235 (15%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + D + G L+ A+AG+GKT + + +L P+ + LL+ Sbjct: 5 QWTPQQADAIAA-RGGTVLVSAAAGSGKTAVLVERVVGRILDE------KNPVDADRLLI 57 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTF+ AA E++ RI + + EL A + + + Sbjct: 58 VTFSNAAALEMKQRIMARMSELIAAHPEDRRL---------------------RRQQLLL 96 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYP-LPRE 178 A + TIH FC ++ N G+ + ++ L +R + Sbjct: 97 GRAQISTIHSFCLELIRSNFQALGIASNTRAADERELEIMRRDCARACIEQFLSDDADGG 156 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRD 238 +Q+V G R + L ++A P ++ L + A + W Sbjct: 157 FSQLVELLSAGRDD--RRVFDTLFSLYDFVRAHPFYNDWLDDKLAYYGEGVRAADSIWGR 214 Query: 239 AVGELDA---------------LIESSGIDRRKFNRSNQAKWIDKISAWAE-EETNSYQL 282 + + L + + + + +A + ++ Sbjct: 215 CILDYAKGALGHAASLLRRALALAAQDEAVQAAYGAALSGDLLQLEQTFAALTARDWDRV 274 Query: 283 PESLEKFSQRFLEDRT-----KAGGETPRHPLFEAIDQLLAEP--------------LSI 323 E L F+ L K+ + R +++L L Sbjct: 275 QERLRLFTFEKLRPLRGDSPQKSAVQALRKSARAIVEELRDRQFCASSAEFLDDVAFLRP 334 Query: 324 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE-----VLAAAIRTRF 378 ++ +K+++ + F DM S L ++G LA + Sbjct: 335 MVSLLFDLTRAFDRLFTEQKQQKYLMDFSDMEQYAISLLVKKAGPGYAKTELAQEAGALY 394 Query: 379 PVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV- 437 +IDEFQDT+ Q IFR + + E+ L ++GD KQ+IY FR A +M+ + Sbjct: 395 DEVLIDEFQDTNAAQEIIFRAVSQN--ESNLFMVGDVKQSIYRFRQAMPELFMEKKKRFA 452 Query: 438 -------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFV 490 A L N+RSA + VN FSQ EI + Sbjct: 453 PYDGKTFPAKIVLGKNFRSAQAVTGCVNFFFSQLMSG----EIGEVDYNQEEALSPGASF 508 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 +G + + G D A+ A QI L+ G L+ +G R VR Sbjct: 509 PEGIEAGCTLRLIDASQYAGELDSTQLEARDVAEQIAGMLERGD----LVADGGVTRRVR 564 Query: 551 ASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 SDI VL+RS + A DALT +P V+ + + E ++ LL+ + P + Sbjct: 565 PSDICVLLRSPAQKAQAYFDALTRRGVP-VWAEPKSGFLTSREIAPVVALLRVLGNPTLD 623 Query: 610 NTLRSALATSMMGLNALDIETLN-----------------NDEHAWDVVVEEFDGYRQIW 652 SAL + + GL A ++ + + V+ R+ Sbjct: 624 IDFASALLSPLFGLTADELTQIRLTDRRAPLYIAAAKAAEAGDPRAANAVDTIARLRRFA 683 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QEAGTQLESEHALVRWL 711 ++R + + + A G+ R ++L + + + + ++ Sbjct: 684 SNATADAVIRRIYEECDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLSGFIGFV 743 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----F 767 + I + + +V++++IH+SKGLE+P+V+L +E Sbjct: 744 DRLIDR--GGDFAPAASMSEQADVVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLNGNTL 801 Query: 768 YHD-------RHSFEAVLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSLGV- 817 H R FE + P E ER L+E+LR+LYVALTR+ + Sbjct: 802 LHSELGFACVRRDFELMKQYTTVPMQALRLELERSMLSEELRVLYVALTRAKQRIVITGV 861 Query: 818 ---------------------APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 P R + D + +A L + A L Sbjct: 862 VTKPEELLCALVSESGTDGKLPPHQVRGANAYLDWILMAAARHPALAERFGLAGAPLDAS 921 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 L + A + + + S E + L+R + + + + Sbjct: 922 EAPLTFELKAAADGEPDAEKTSETTAASPDEAALEALRRRLAFRY---PFEAQTKIPTKM 978 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN--WVR 974 A + A+ S P GA G LH + D+ + Sbjct: 979 AVSQLAGSAYAASYRFSA--RPAFLQGDGLTGAQRGNALHKFMQFADYQAAARDASGEIA 1036 Query: 975 EKLELGGFESQWEPVLT-EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033 G Q + + + A + L S A+ E+ F Sbjct: 1037 RMAREGFLSRQEADSIRPDRVRAFFSSRLAARIFS-----AKQVWRELRF---------- 1081 Query: 1034 SQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093 L + L ++G D VF E ++DYK++ + Sbjct: 1082 -----LAEAGERELGAYSALFTNGGETAIQGVADCVFLEEDGAVVVDYKTDRVKTPDE-- 1134 Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD 1128 RY +Q LY AL L + + Sbjct: 1135 ---------LRERYRVQLALYRNALTEALGVPVKE 1160 >UniRef50_C0FS43 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FS43_9FIRM Length = 1182 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 204/1193 (17%), Positives = 384/1193 (32%), Gaps = 211/1193 (17%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S E + L L+ A+AG+GKT + ++++ P+ ++ LL+ Sbjct: 4 SWTTEQQQVIDL-RNRNILVSAAAGSGKTAVLVERIVKIITDKN------HPVDIDHLLI 56 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 VTFT AA AE+R RI + I + + LL + Sbjct: 57 VTFTNAAAAEMRERIGNAIEKALDEQPGN---------------------EHLLRQLTLI 95 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREI 179 A + TI FC ++ + E + ++ ++ L LR ++ Sbjct: 96 HNAQITTIDSFCLYVVRNHFHEIDLEPNFRIGDEGELKLLREDVLGRVLEQNYEEPSEAF 155 Query: 180 AQVVFETWKGP-QALLRDINRYLQGEAPVIKAPPPDDETL--------------ASRHAQ 224 + V G A L ++ L + P ++ A A Sbjct: 156 SDFVEGYASGRTDAALNEMILQLYEFSRSYPWPEKWLDSFVGIYRIENREELDRAEWLAP 215 Query: 225 IVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEE--------- 275 + I V + + + A+ + D ++K + ++ Sbjct: 216 LTQNIRFVLKDCEQLLKQALAVTQQD--DGPDMYEKAVRSDLEKYESLSKLTSFCELSVA 273 Query: 276 ---------ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL 326 ++ + + + L ++ K + F +++ E L + Sbjct: 274 LSDIKYDRLASSRGFEGDPDKLELVKSLREQAKDVVKKLCKQYFFCSPEMMIEQLERTEP 333 Query: 327 VI---TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVL---AAAIRTRFPV 380 ++ R + + A KRR+ + F D+ L E E A R F Sbjct: 334 MLEEVVRLTKQFADEFAAAKRRKNLVDFHDVEHFALQILVDEETEKAKKTAEEFRDTFEE 393 Query: 381 AMIDEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVH- 438 MIDE+QD++ Q + R I + + ++GD KQ+IY FR A +MK Sbjct: 394 IMIDEYQDSNEVQETLLRSISREERGENNIFMVGDVKQSIYRFRLARPELFMKKYDSYSL 453 Query: 439 -----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMF-----REIPFIPVKSAGKNQALR 488 L N+RS ++ N +F + + E P S + + Sbjct: 454 EESTTQRIDLHKNFRSREEVLTCTNDIFYKIMARSLGNVEYDAEAALYPGASYPAIEMKK 513 Query: 489 FVFKGETQPAMKMWLMEG---------------ESCGVGDYQSTMAQVCAAQIRDWLQAG 533 K ET + E D ++ A++ A +IR + Sbjct: 514 TAGKEETAEEQTKQSIADFTPEILLADSNDELLEDTEFSDKKTLEAKIVAEEIRHLM--- 570 Query: 534 QRGEALLMNGDDARPVRASDISVLVRSRQ-EAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 + + R R SDI +L+RS A + + L IP+ +S+ F T+E Sbjct: 571 KTQPVTDKATGELRAARYSDIVILLRSLSGWADSLVEVLNGNGIPAHTVSS-TGYFSTVE 629 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW---DVVVEEFDG-- 647 Q +L +L+ + P ++ + + L + M GL ++ L ++ + + V+E +G Sbjct: 630 VQTVLSMLRLLDNPRQDIPMAAVLRSPMAGLTDEELAVLRLEDGSVPFHEAVLELAEGLY 689 Query: 648 --------------------------------------------------YRQIWRKRGV 657 RQ+ + Sbjct: 690 EEDGQKEISDSEADSEADQKQGRNADEKTENHIEITAHRKLLKFYKKYKQLRQLVPDTPI 749 Query: 658 MPMLRALMSARNIAENLLATAGGERRLTDILHISE-LLQEAGTQLESEHALVRWLSQHIL 716 ++ ++ + A G RR ++ + E T + VR++ + L Sbjct: 750 HELIEIILRETGYGHYVAAMPAGNRRTANLNMLLEKAAAYEKTSYKGLFHFVRYIDE--L 807 Query: 717 EPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ----AFYHDRH 772 + + + ++ +V+I++IHKSKGLE+P+V + + ++ H Sbjct: 808 QKYDVDFGEADMVGENEDVVRIMSIHKSKGLEFPIVIVSGMGKNFNKQDTRSKMVLHPEL 867 Query: 773 SFEAVL---------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV------ 817 A + E L E+LR+LYVALTR+ L Sbjct: 868 GIGLDYMDGKKRIKSPTIAKKAIAKQIDLENLGEELRVLYVALTRAKEKLILTGTLKDAP 927 Query: 818 ---------------APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 862 A ++G + L +L G+ + L + Sbjct: 928 EKLEFFRQQANLSKAADRPLSYLTREGASGYLDWILPAVLSYGDKYPVRIVEAAELVLDE 987 Query: 863 DDIAWQTAQTGDNQPWQVNDVSTA---ELNAKTLQRLPGD----NWRVTSYSGLQQRGHG 915 + + + + ++ T +L + QR P S S L+ R Sbjct: 988 VENQLEQNEDLTERIEEIEAADTQLVGQLKQRFSQRYPYQTDILRKNKYSVSELKHRAMR 1047 Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLTPHQFP--------RGASPGTFLHSLFEDLDFTQP 967 + + A V L + RGA GT +H + E DF Sbjct: 1048 EKFEAEQEETIPAFLEEPVTPTIPLFIQREESVEQETANRGALRGTAVHRVMECYDFASE 1107 Query: 968 VDPNWVREKLELGG-FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQV 1019 + E +E + ++ E A + ++L+Q Sbjct: 1108 KSVHEQMEAMEKEEKITADMRALVREQTVADFVSSETGKRMALAQRGEHFTVR 1160 >UniRef50_D0L8X3 Exodeoxyribonuclease V n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8X3_GORB4 Length = 1134 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 277/1088 (25%), Positives = 418/1088 (38%), Gaps = 126/1088 (11%) Query: 192 ALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSG 251 L + + G V+ P ++ H + A T + R + AL + Sbjct: 65 ELRERMRERVHGLVGVLADPASAAQSADQLHRLLAA--GTAEDVARRRAHLVRALSDFDA 122 Query: 252 IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFE 311 + + + + E Y++ E +++ + D G T P F Sbjct: 123 STIATTH--TFCNRMLEALGFLGEREMVYRIVEEVDELTDEVALDLYLRGFSTSEAPDFS 180 Query: 312 AIDQLLAEPLSIRDLVITRALAEI----------------------RETVAREKRRRGEL 349 + ++R + A R+ V KR Sbjct: 181 LAEAQRIARDAVRQAAVALAPEAAELQDAGEPGRVAARRVRFAARVRQIVEARKRTSRLR 240 Query: 350 GFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 +DD+ + L + GE IR+ F VA++DEFQDTDP Q+ I RR +H Sbjct: 241 TYDDLQTILHRIITDPDVGEAACRRIRSTFAVALVDEFQDTDPLQWDIVRRCFHG--HRR 298 Query: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L+L+GDPKQ+IY FRGA++ +Y+ A LDTN RS +V S+ L+ Sbjct: 299 LVLVGDPKQSIYGFRGAEVLSYLSAVRSADTLRALDTNRRSDGDLVASLWTLYGGAT--L 356 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 I PV +A L + + M+ S GV A+ + D Sbjct: 357 GHPGIVVHPVGAAHAGSRLDGAVPMQVRAFMRTDFNRLNSLGVPSAPDARAR-ITTDVAD 415 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 + + ++ RPV DI+VLVR + ++ AL + +V S +VF Sbjct: 416 HISSALSAGMTIVVDGARRPVEPGDIAVLVRQNKTIEPLQTALAARGVNAVIGSGV-NVF 474 Query: 589 ETLEAQEMLWLLQAVMTPE--RENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFD 646 ET AQ LW+L+AV P L + T ++G + E + F Sbjct: 475 ETSAAQHWLWVLRAVEQPSRPDRVRLAAL--TPLLGWTPERLAV--QAETGTAELGAGFA 530 Query: 647 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEH 705 Q++ + G M + LM+ N+A +LA GGER LTD+L IS L + E Sbjct: 531 ALGQVFGECGFAAMAQRLMAQENVAARVLAMRGGERLLTDLLQISALCNKQVVESGEGIS 590 Query: 706 ALVRWLSQHILEPDSNA--SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF--- 760 LV WL+ I + Q RLE D VQI+T+H SKGL++P+V++PF + Sbjct: 591 GLVEWLADRIADSSRRQRHEDQSRRLERDTEAVQIMTVHASKGLQFPIVYVPFGWDGTWI 650 Query: 761 RVQEQAFYHDRHSFEAVLDLNAAPE----SVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816 + +HD + E EDLRLLYVALTR+ Sbjct: 651 DEEGDLTFHDDEGTRLLDVAGPGAPGRGTRRARYAEEVAGEDLRLLYVALTRAQSQVVTW 710 Query: 817 VAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC-----------------IEA 859 AP +H+ GR E + Sbjct: 711 WAPTANT-----PTGPLHRLIFGRQRALAERSGTDPQAPWTVAKSVDVPDDVECVTVLRQ 765 Query: 860 LCDDDIAWQT-----AQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH 914 L + D + T P + L+A R WR TSYS + Sbjct: 766 LAERDSRIEVSPAGRLPTPPAGPAGDDPADLPVLSAAAFDRRIDQQWRRTSYSAIIAGAA 825 Query: 915 GIAQDLMPRLDVDAAG-VASVVEEPTLTPHQFPR----------------------GASP 951 + + D A ++ +EP P GA Sbjct: 826 HGPSAVETGSERDGARLDTALDDEPIEAPEPLAGNVIEDESGERTGTPSPMSGLSFGAGF 885 Query: 952 GTFLHSLFEDLDFTQPVDPNWVREKLELG-GFESQWEPV--LTEWITAVLQAPLNETGVS 1008 GT +H + E +D + P + V + + G V LT+ + VL PL Sbjct: 886 GTLVHEVLEYVDTSAPDIRSHVAQLVARAAGVRGGTVDVNVLTDALVGVLTTPLGFGD-- 943 Query: 1009 LSQLSARNKQVEMEFYLPISE-------------PLIASQLDTLIRQFDPLSAGCPPLEF 1055 L ++ R++ E++F LP+ + IA +D + DPL L Sbjct: 944 LWSIAPRDRLAELDFELPLGDDAASDETETGATVAEIADLMDRHLGADDPLRPYAQVLRG 1003 Query: 1056 MQ---VRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDS---SAYTQQAMAAAMQAHRYD 1108 + +RG L G ID V R +GRY ++DYK+N L + AMA M Y Sbjct: 1004 VPAARLRGFLTGSIDSVLRVPDGRYVVVDYKTNRLRPGELMVEDFHSGAMATEMIHAHYP 1063 Query: 1109 LQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK--EHPQQGIYTTRPNAGLIA 1166 LQ LY++ALHRYLR RIA Y EHH GGV Y F+RG+ P G++ +P + L+ Sbjct: 1064 LQALLYSVALHRYLRWRIAGYTPEHHLGGVQYHFVRGMAGPSTPPGCGVFEWKPPSELVT 1123 Query: 1167 LMDEMFAG 1174 + ++ AG Sbjct: 1124 AISDLLAG 1131 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 14/199 (7%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + T D ++EASAGTGKT+ I +L R L + + +L+ Sbjct: 5 TRAPHTFDIAEDLPAQTTVLEASAGTGKTYAIVSLAARYLAE---------GVPISGMLL 55 Query: 62 VTFTEAATAELRGRIRSNIHEL---RIACLRETTDNPLYERLLEE--IDDKAQAAQWLLL 116 VTF+ AATAELR R+R +H L RLL +D A+ L+ Sbjct: 56 VTFSRAATAELRERMRERVHGLVGVLADPASAAQSADQLHRLLAAGTAEDVARRRAHLVR 115 Query: 117 AERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP 176 A D + + T H FC RML F +++E+ L + D + R Sbjct: 116 ALSDFDASTIATTHTFCNRMLEALGFLGEREMVYRIVEEVDELTDEVALDLYLRGFSTSE 175 Query: 177 REIAQVVFETWKGPQALLR 195 + A+ + Sbjct: 176 APDFSLAEAQRIARDAVRQ 194 >UniRef50_A2RH77 ATP-dependent helicase/nuclease subunit A n=4 Tax=Lactococcus lactis RepID=ADDA_LACLM Length = 1203 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 211/1275 (16%), Positives = 433/1275 (33%), Gaps = 237/1275 (18%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKTF +A + + + + ++ L + TFT+ A +ELR R+ Sbjct: 20 NILVSASAGSGKTFVMAQRIVEKV---------KQGIEIDRLFISTFTKKAASELRMRLE 70 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 ++ + + + A L LA + + A + T+ F Q++ Sbjct: 71 RDLKKA------------------RQESSDDEEAHRLTLALQNLSNADIGTMDSFTQKLT 112 Query: 138 NLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREI---------------- 179 N + +++ D ES L Q + + Sbjct: 113 KANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLNISKDKFEKLIKNFSK 172 Query: 180 ----------AQVVFETWKGPQALLRDI-NRYLQGEAPVIKAPPPDDETLASRHAQIVAR 228 ++ + + + N++L+G ++ + ++ Sbjct: 173 DRNILGFQKVVYTIYRFASATENPISWLENQFLKGFETYKSLTDLSEDFTVNVKENLLTF 232 Query: 229 IDTVKQQWRD---------------AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWA 273 + ++ + + + L+E+ + I + Sbjct: 233 FELLENSLTNGVIAKKGAGRDKANLILDNKNELLEAISKKDFVTCTALFLSIDTDIRVGS 292 Query: 274 EEETNSYQLPESLEKFSQRFLEDRTKAG---GETPRHPLFEAIDQLLAEPLSIRDLVITR 330 ++ L + Q + ++K G + + I++ + I + + Sbjct: 293 SKDEALSALKKDFSAQKQDLVGSKSKPGELRKFVDKIKHGQLIEKYQNQAFEIA-SDLQK 351 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 + + +T K+ + D+ L E + +R + MIDE+QDT Sbjct: 352 FIIDFYKTYLERKKNENAFEYSDIAHFAIEIL--EENPDIRENLREHYDEIMIDEYQDTS 409 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YTLD 444 Q R+ + + L ++GD KQ+IY FR AD +++ L Sbjct: 410 HTQERMLELLSN---GHNLFMVGDIKQSIYGFRLADPGLFLEKYKSYDQAENPNQLIRLK 466 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM 504 N+RS ++N N +F D + E+ + ++ + + + E ++ L Sbjct: 467 ENFRSRGEVLNFTNDIFKHLMDEKLG-EMTYGKEEALVQGNISDYPVEAEKDFYPELLLY 525 Query: 505 EGESCGVGDYQST------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLV 558 + + S + A +I+ ++ G V DI++LV Sbjct: 526 KENTSEEEIEDSEVKISDGEIKGAAQEIKKLIEYG---------------VEPKDIAILV 570 Query: 559 RSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 RS+ ++ D L +IP V R +++E ML +L+A+ P + +L + L + Sbjct: 571 RSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRS 630 Query: 619 SMMGLNALDIETL----NNDEHAWDVVV-------------------------EEFDGYR 649 + G N ++ + + D WD ++ ++F +R Sbjct: 631 PLFGFNEDELTRISVQGSRDLRFWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWR 690 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALV 708 ++ K + +L + + + + A GE R ++ +S + + + V Sbjct: 691 KLVNKIPIHRLLWKIYTETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFV 750 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI----TNFRVQE 764 R +++ + + + AS ++ V+++T HKSKGLE+ V+L + + ++E Sbjct: 751 RLINKFMEQNNDLASVNIKLP---QNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKE 807 Query: 765 QAFYHDRHSFEAVL--DLNAAPE-------------------SVDLAEAERLAEDLRLLY 803 H DL A P+ + DL + L+E++R+LY Sbjct: 808 DVILSREHGLGMKYIADLKAEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLY 867 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VA TR+ L + + + G++L + G + I AL + Sbjct: 868 VAFTRAKKKLYLV-GKIKDTDKKAGLELYDAATLEGKILSDKFRNSSRGFQHWILALQNA 926 Query: 864 ---DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDL 920 + + + ++ S + + DN + S+S + I Sbjct: 927 TKLPMKLNVYTKDELETEKLEFTSQPDFKKLVEESEKFDN--IMSFSDEIKEAQKIMNYQ 984 Query: 921 MPRLDVDAAGVASVVEE-------------PTLTPHQFPR---------------GASPG 952 P + +F R A G Sbjct: 985 YPHQAATELSSIQTPSQVKKRSYEKQLQVGEVQPVSEFVRVKNLDFSDFGPKKITAAEMG 1044 Query: 953 TFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQL 1012 + HS + DF+Q D + L+ GF+ + + + IT +L E G LS+ Sbjct: 1045 SATHSFMQYADFSQA-DLFSFQATLDEMGFDEKIKNQID--ITKILTLFDTEFGQFLSE- 1100 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 + E F + ++ EF + + +++G D + Sbjct: 1101 NVDKTVKEAPFSMLRTD------------------------EFAKEQYIVRGICDGFVKL 1136 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 + L DYK++ S+ + RY Q LY+ AL + D Y Sbjct: 1137 ADKIILFDYKTDRFTNVSA--------ISEIKERYKDQMNLYSEALQKAYHVNQIDK-YL 1187 Query: 1133 HHFGGVIYLFLRGVD 1147 GG +F+ +D Sbjct: 1188 ILLGGPRKVFVEKID 1202 >UniRef50_B1MZM2 ATP-dependent helicase/nuclease subunit A n=3 Tax=Leuconostoc RepID=ADDA_LEUCK Length = 1236 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 206/1269 (16%), Positives = 410/1269 (32%), Gaps = 223/1269 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKT + ++ +L ++VE L+VTFT AA E+R R+ Sbjct: 18 HNILVAASAGSGKTTVLIERLIQKILS---------GISVENFLIVTFTNAAAKEMRERL 68 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 I + ++L + A + TI + R+ Sbjct: 69 EIAIEKRLRDANDG-------------------MKRFLQEQLLLLPAANISTIDAYALRL 109 Query: 137 LNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQ---VVFETWKGP- 190 + G+ + +L+ D E + Q D Y + + + P Sbjct: 110 IENYYHVIGLDPQFRLLSDTAERDMMRQDVLDTVFEAFYDETHPQHENFIALVNNFGNPN 169 Query: 191 --QALLRDINRYLQGEAPVIKAPPPDDETLASRHA-----------------QIVARIDT 231 AL + + + E + A ++AR++ Sbjct: 170 QDDALRQAVLKLSDFAEARPDGQQWLKELDKNDLATANGLTQSQTYRLTILPMMIARLEQ 229 Query: 232 VKQQWR----------------DAVGELDALI---ESSGIDRRKFNRSNQAKWIDKISAW 272 + + + A E+ A + + + +D + + K+S Sbjct: 230 LLEIAQATQTNLSGVPELKKTQQAFDEIIAYLVNVQQALVDDDWDTLRGKLSQLPKVSLE 289 Query: 273 AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAI-------DQLLAEPLSIRD 325 + PE L +Q G ++ + + Q + + + Sbjct: 290 TKRSKGIKDEPELLALLAQATTVKNNILGAKSDLKNVIDTFFKFDQNDWQYVEKQATELV 349 Query: 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDE 385 + + KR + F D+ + L + + +F ++DE Sbjct: 350 NTLVTLTQACQSAFTTAKRDAQLVDFPDLGALALEILNDDMT---RKTVSGQFQEILVDE 406 Query: 386 FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HA 439 +QD + Q + ++ + + ++GD KQ+IY FR A+ + + + + Sbjct: 407 YQDINQLQETLLTKVSN---GHNMYMVGDVKQSIYGFRQAEPTLFARKYRQFALPDNPDS 463 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----EIPFIPVKSAGKNQALRFVFKGE 494 L N+RS + N +F+Q D + E +P + + F Sbjct: 464 RIELADNFRSQNNVTRVTNLIFTQLMDEKLGDIAYTGEAKLVPKANYPTDVTPVFNMTII 523 Query: 495 TQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDI 554 QP + E ES Q+ AQ A QI RPV+ DI Sbjct: 524 KQPNVTTSEDEDESQEFEKRQAQYAQ-LANQILSLRD--TTIFDRKAEPAGMRPVQYGDI 580 Query: 555 SVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRS 614 ++L RS+ + L IP+ + + + F+T+E ML +L+ + P ++ L + Sbjct: 581 AILTRSKTGYIDLVATLRQAGIPT-QVDSVGNYFQTMEVYLMLDVLRVIDNPHQDIPLAA 639 Query: 615 ALATSMMGLNALDIETLNNDEHA---WDVV-------------VEEFDGYRQIWRKRGVM 658 L + M G + D+ + + W + ++ + Q+ + ++ Sbjct: 640 ILRSPMFGYSENDLAAVRLADKKHDYWSALTVFAQADQRSQTVIDLIKKWHQLAIQNDLV 699 Query: 659 PMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWLSQHILE 717 ++ A+ + + + GG +R ++ + + + +R++ Q Sbjct: 700 ALIWAIFDDTSWLDYVAGMPGGAQRQANLHALYDYARTYQENTHAGLFRFIRYIEQL--- 756 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----------- 766 +++ + E+++ V+I+TIH SKGLE+P+V+LP + Sbjct: 757 QENDGQLGEAPQEANEQAVRIMTIHASKGLEFPIVFLPEFDKSFNTQDLSGKMLIQKNAG 816 Query: 767 --FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 + + + + + +E++RLLYVALTR+ + + Sbjct: 817 IGLEYLQPEALVAMPTLKKLTVQQALKRQSWSEEMRLLYVALTRAEQQIYVVGTVKLDEN 876 Query: 825 GDKKGDTDVHQSA-------------------LGRLLQKGEPQDAAGLRTCI-------- 857 + + + Q A LL L + + Sbjct: 877 EENQRLIALWQRAKETSGQFLAEDLRLSAKSYFDWLLISLARTKNDDLESWLGDGHLPHV 936 Query: 858 ---EALCDDDIAWQTAQTGDNQPWQVNDVSTAELNA---------KTLQRLPGDNW---- 901 E D I+ + D + T E+ + + + Sbjct: 937 LGPETTLDSQISVRFINESDVVIPEPQGNETKEITRASTYQAEDFARAKAILDYQYPFQQ 996 Query: 902 -----RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE---PTLTPHQF-------P 946 S S +++ + + L+V G E L F P Sbjct: 997 ATRTAAYQSVSEMKRLFEDPDRANLKTLNVLENGQLQPANELVSDKLVLPTFMTDGSQKP 1056 Query: 947 RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEW--ITAVLQAPLNE 1004 A+ GT H + + LDF Q + + + + + I +L Sbjct: 1057 SSAAVGTATHLMLQLLDFKQIQTHQSLTALRDDLVTQGRLTAPVAALIDIDQILNFLQTP 1116 Query: 1005 TGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 L L A + + E F + + I + Q ++ G Sbjct: 1117 FAQRLC-LHADSLRREATFAMIMPANQIYEHV------------------HDQASVLVHG 1157 Query: 1065 FIDLVFRHEGR--YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 ID F + L DYK++++ ++ ++ M RY Q LY AL + Sbjct: 1158 IIDGYFIDKKTKSITLFDYKTDFVRHGR---VEEDISKMMV--RYRGQLTLYKQALMQ-- 1210 Query: 1123 RHRIADYDY 1131 DY + Sbjct: 1211 --EFPDYTF 1217 >UniRef50_Q6A850 Exodeoxyribonuclease V beta chain n=3 Tax=Propionibacterium acnes RepID=Q6A850_PROAC Length = 1078 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 241/889 (27%), Positives = 382/889 (42%), Gaps = 64/889 (7%) Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFPVAMIDEFQDTD 390 +RE V R + R FDD++ L ALR G + A + RF + M+DEFQDTD Sbjct: 205 ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLARATLAHRFGLVMVDEFQDTD 264 Query: 391 PQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA 450 P Q+ I RR +H + L LIGDPKQ+IYAFRGADI Y A LD N+R+ Sbjct: 265 PLQWEILRRAFHG--HSNLWLIGDPKQSIYAFRGADIHAYQDAAQSASHVLHLDVNYRTD 322 Query: 451 PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGET-----QPAMKMWLME 505 +V +VN LFS +A + +I V + + ++ QP L Sbjct: 323 KPIVEAVNTLFS---NAQLGHDISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQA 379 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 565 G +T Q + + + G ++ +GD RP+R +DI++LVR+R+ A Sbjct: 380 --PAGAQLNTATSDQFVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRRGA 437 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 ++ AL+ P+V+ S V+ + A++++ LL+A+ E + ++G Sbjct: 438 ELATALSQAHQPAVF-SGASPVWSSQAAEDLITLLEALEN-TDERLRTRLCLSDLIGATP 495 Query: 626 LDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 D+ +D + + + W GV + A + + L++ AGGER +T Sbjct: 496 ADLA--ASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSMAGGERYVT 553 Query: 686 DILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKS 744 D+ +++ A + + A W+ + + RL+SD+ V I+TIH++ Sbjct: 554 DLRQVAQKAHIAACEGRLTATATAAWIREQQQL---AGDDEPRRLDSDQQAVIIMTIHEA 610 Query: 745 KGLEYPLVWLPFITNFRVQEQAF-----YHDRHSFEAVLDLNAAPESVDLAEAERLA--E 797 KGL +P+V LP ITN +Q+ +HD + S+ + E E Sbjct: 611 KGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIAIESHEEDERGE 670 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI 857 +LRLLYVALTR+ L +P R + + R + A + Sbjct: 671 NLRLLYVALTRARSAVRLWWSPCPLRH---RWSAFQRLVEMDRTTGELGSGVAGTDPGTL 727 Query: 858 EALCDDDIAWQTAQTGDN-QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 L IA A V+ A + +TL R + TSYSGL H Sbjct: 728 PWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAA 787 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWV--- 973 + M +D V++ P G S GT +H++ E +D + V Sbjct: 788 VSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSI 847 Query: 974 -REKLELGGFESQWEPVLTEWITAVLQAPLN--ETGVSLSQLSARNKQVEMEFYLPISEP 1030 R L + L + VL + L G++L+ S ++ EM F L +++ Sbjct: 848 TRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQS 907 Query: 1031 LIASQL---------DTLIRQFDPLSAGCPPLEFMQ-----VRGMLKGFIDLVFRH-EGR 1075 ++ + +L+ DP+S L + +RG L G ID V R +GR Sbjct: 908 GRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGR 967 Query: 1076 YYLLDYKSNWLGE----DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDY 1131 + ++DYK+N + Y M M + Y LQ LY+ ALHR+L + YD Sbjct: 968 HLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLASSLPGYDP 1027 Query: 1132 EHHFGGVIYLFLRGV------DKEHPQQGIYTTRPNAGLIALMDEMFAG 1174 H G + YLF+RG+ D + P G++T P LI + E G Sbjct: 1028 ATHLGPIGYLFVRGMADRPVPDGDMPD-GVFTWHPRPELIEAISERLGG 1075 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 97/290 (33%), Gaps = 17/290 (5%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + D R QG L+ ASAGTGKT+TI+A+ + + + ++ LL+ Sbjct: 1 MTTNTSFDITRPLPQGTVLLAASAGTGKTWTISAVCAKAIATGL--------VHMKNLLL 52 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRE-TTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VTF +A ELRGR+ + R+ +P L+ + A Sbjct: 53 VTFNRSAARELRGRVYERLVNTRLLLAGAREPSDPCDWSLIRCGRA---GFTRVESALDN 109 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 D A + T H F RML S L+ D + L + D + R + Sbjct: 110 FDRAVITTTHEFASRMLVELGVLSDHDPSSVLMTDLAPLATEVSDDHYLAQYLDYDRPPS 169 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR-IDTVKQQWRDA 239 V E + + + P D S + R + D Sbjct: 170 --VREKRELSRDVAVKYGEVPIFSKDDADTPVQDVLWALSVREDVRRRSKSRSVHTFDDL 227 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF 289 +G+L + R R+ A + ++T+ Q F Sbjct: 228 IGDLVKALRDPY--RGPLARATLAHRFGLVMVDEFQDTDPLQWEILRRAF 275 >UniRef50_C0EHH1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHH1_9CLOT Length = 1188 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 222/1242 (17%), Positives = 398/1242 (32%), Gaps = 188/1242 (15%) Query: 4 VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 E + G L+ ASAG+GKTF +++ + L R + LLVVT Sbjct: 21 TPEQRAAITSD-GGTLLLSASAGSGKTFVLSSRVVYKLAH------RERETRADRLLVVT 73 Query: 64 FTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDE 123 FT AA E+R RI + + EL + L + + Sbjct: 74 FTRAAAKEMRTRITAKLDELVARFPDDA---------------------KLQRQKLLLSR 112 Query: 124 AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQ 181 A + TI FC ++ N G+ + ++ ++ ++ +A + + + +E A Sbjct: 113 AKITTIDSFCADLVRDNFDRLGLSPDFRIADETELAQIQDEALDELFEDYYSQGDKEFAA 172 Query: 182 VVFETWKGPQALLRDI--------------------NRYLQGEAPVIKAPPPDDETLASR 221 + + L+ I + L GEA + P E A Sbjct: 173 LSDSFSLKDDSRLKGIVLSIYSRIRSNPFPLEWLWESFRLYGEADELDTTPWGLELRAQA 232 Query: 222 HAQIVAR-----------------IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAK 264 I DT++ A+ +L ALIE K Sbjct: 233 SRAIDHCTELYRRGFAFTQQNPVVYDTLRPYHEAALEKLAALIEELDGCG-WDEARGVLK 291 Query: 265 WIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIR 324 ++ ++L + + L ++ E + ++ Sbjct: 292 AFKFPRKPVKKPEG---FDKTLSEEEDEKFLKPARNAVNGILKELLTCSEEEFWEDIRLQ 348 Query: 325 DLVITRALAEIRETVARE----KRRRGELGFDDMLSRLDSALRSESGEVLA-----AAIR 375 V+ + E+ E + KR + L F D+ L L A+ Sbjct: 349 QPVLRKLC-EVVERYSERMDASKREKNILDFPDLGIFAIRLLLERREGKLLRTPVGEAVS 407 Query: 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS 435 + ++DEFQD + Q +F + + ET L L+GD KQ+IY FR A +++ R+ Sbjct: 408 SEIDEILVDEFQDVNQMQDMLFEAVS--KDETNLFLVGDIKQSIYRFRQASPEIFLQKRA 465 Query: 436 EV--------HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL 487 A TL N+RS P + VN LF Q ++ + + +A Sbjct: 466 RYADFSTGSYPARLTLAENFRSRPEVTGCVNYLFRQLMS----EQLGELDYGEGEQLRAA 521 Query: 488 RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDAR 547 A + + A +I L+ G + R Sbjct: 522 ASYPPHPDAQAELHLIDTAADDSDEGRVAIEANYIGRKILSMLRNG---YPVTGEDGKLR 578 Query: 548 PVRASDISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 P SD ++L+RS+++ A + L L + V+ N F + E ML LL+ + P Sbjct: 579 PCTLSDFAILLRSKKDKAEVYAEQLMHLGL-DVWTENTSGYFRSREVSLMLNLLRVIDNP 637 Query: 607 ERENTLRSALATSMMGLNALDIETLNNDEHAW--------------DVVVEEFDGYRQIW 652 ++ L S L + + G ++ L + V+ R+ Sbjct: 638 LQDIPLLSVLLSPLYGFTPDELAELRILDRRAPLYLCVTASDSGHCREFVQSLSRLREAA 697 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWL 711 V +++ + A E++L ++ + +R++ Sbjct: 698 AVTSVEKLIQKIYDETLFYALFGAMESSEQKLANLRLLLSYAAGYERGSGRGLSGFLRYI 757 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----- 766 E + + V+I+T+HKSKGLE+P+ ++ Q Sbjct: 758 D--TAEEANRDFECANIFTENSSAVRIMTMHKSKGLEFPICFVANCAGRFNQRDLSSVYC 815 Query: 767 ------FYHDRHSFEAVLDLNAAPESVDLAEAER--LAEDLRLLYVALTRSVWHCSLGVA 818 F E + P E +R L+E++R+LYVA+TR+ L +A Sbjct: 816 LSNTHGFAMKLTVPELLKQYPTLPYLAAQLENKRALLSEEMRVLYVAMTRAREKLILTIA 875 Query: 819 PLVRRRGDKK--------------------GDTDVHQSALGRLLQKGEPQDAAGLRTCIE 858 ++ +K D L R G+ + A Sbjct: 876 ADNPQQLVQKAAVQIVEGERLPFYPLYSAHSYADWLLMGLLRHPSAGDLRSQADSGLSPY 935 Query: 859 ALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ 918 D D Q + ++ A+ + + + Y I Sbjct: 936 EPQSGDARCPLKVVLDGQEYGEQELEQAQPAPEADEETLAALRQNLGYRYAHAALSEIPA 995 Query: 919 DLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD--PNWVREK 976 L + + AS+ P + A GT H + DF + D + Sbjct: 996 KLSVTQIAEHSRPASLTRRPQFERERGLTPAERGTATHQFIQFADFARAADDLEAEISRL 1055 Query: 977 LELGGFESQWEPVLTEW-ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 E G + Q + + ++ +PL + + AR E++F+ + Sbjct: 1056 RENGFIDPQQAASVDRKGLESLFHSPLAQRIRA-----ARRVYRELDFFYDLD------- 1103 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 S P E + +++G D V ++DYK++ Sbjct: 1104 ----------ASEIFPEQETDGEKILVQGIADCVLDEGESLVIIDYKTDR---------- 1143 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFG 1136 A + RY Q LY A+ L ++ Y G Sbjct: 1144 -ATREQIAG-RYRGQLMLYKRAVEAMLGKPVSACILYAVSLG 1183 >UniRef50_D1C5W8 UvrD/REP helicase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W8_SPHTD Length = 1125 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 230/1191 (19%), Positives = 405/1191 (34%), Gaps = 148/1191 (12%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 T + +R L +EA AGTGKT + + +L TV+EL+V+TFT Sbjct: 10 TREAIRTALDRNFFVEAGAGTGKTTVLVDRIVAILRNGHA--------TVDELVVITFTR 61 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 A AEL R+R + E R + + + L A + A + Sbjct: 62 LAAAELATRVRERLEETR------------------DTTESEEERARLEEALYALPRARI 103 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVF 184 TIH F +L E+G+ + ++D SL +A D+ P E + V+ Sbjct: 104 ETIHAFAAGLLRERPVEAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNPEDGERPEAVW 163 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 L Q P D+ A +AR + + + + Sbjct: 164 RALNRGLDLRHLREVVEQVHHHRSLLPLVHDDVPAPDIHGFLARFEQDVDELEEILARCR 223 Query: 245 ALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGET 304 + R + A E + S + +++ + Sbjct: 224 NPADHGAQQIRMLMAQRDDLRAVRNDRDALERAILHLPKISQKGARTSWVDPADCDRQKE 283 Query: 305 PRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRS 364 L EA++++ + + + ++RR G F+D+L LR Sbjct: 284 ICRELNEAVEEVKRALRAEAIAGLLPLAEDFVRGYTEQRRRTGRAEFEDLLIWARDLLRD 343 Query: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP--------------ETALL 410 + R RF ++DEFQDTDP Q I + +P L Sbjct: 344 R--PEVRRYFRERFRCILVDEFQDTDPLQVEILLYLCGEEPDGVAARDWRELRPAPGRLF 401 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAF 468 L+GDPKQ+IY FR ADI Y + V T+ N+RS G+++ VN F Sbjct: 402 LVGDPKQSIYRFRRADISIYEWVKRHVLPGDLCTITQNFRSLGGVIDWVNGCFQHIIAPH 461 Query: 469 MFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 + ++P+ + + + E + D + A AA +R Sbjct: 462 DGVQAGYVPL------DPWPQARLDLPRAPVVVVHHEMDG-SADDVRRYEATTLAALLRQ 514 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 + + + RP R D+++L+ SR +AL IP + S F Sbjct: 515 AVD-VEGWPVRDPETGEIRPARWRDVAILIPSRTGIEIYEEALAEAGIPYRH-EGGRSFF 572 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND-EHAWDVVVE---- 643 + E +E++ L+A+ P ++ +AL + G + +I +D E Sbjct: 573 QRQEVRELINCLRAIDDPGDRLSMVAALRSGAFGCSDEEIFLAAEAMGTDFDYRREPPPE 632 Query: 644 ---------EFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISE-L 693 + + + ++R ++ + E L G++ ++L + + Sbjct: 633 HAAVADGMHTLRELHTLRHRLPLPELVRRVIDETRLIEYALTLPQGDQAAANLLKVVDQA 692 Query: 694 LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 A + A VRWL S E+ +V+++TIH +KGLE+P+V Sbjct: 693 RAFAAARGGGLRAFVRWLD--TATSRSTEEEDADVAEAGDDVVRLLTIHAAKGLEFPIVA 750 Query: 754 LPFITNFRVQEQAFYHDRHSFEAVLDLNAAPE----------SVDLAEAERLAEDLRLLY 803 L + + + D L + + + + ++ + AE RLLY Sbjct: 751 LANLQGRDARTRNVIPDHAVRRLHLRVGSQDQGYFETPGYAAAAEIEKQHDAAEQDRLLY 810 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDD 863 VA TR+ H L V R ++ + L RL + Sbjct: 811 VAATRARDHLILPVIIWKGSREKERKP----KGMLARLAPHLPVPTPDHSPNGADIDGCH 866 Query: 864 DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPR 923 + GDN + + +++ R W + + L+Q G G+ Sbjct: 867 VLLAAHLPVGDNGLRESPPATNVDVDDVLAVRE---RWLMERAALLKQAGAGLQVTTASS 923 Query: 924 LDVDAAGVASVVEEPTLTPHQFPRGA--SPGTFLHSLFEDLDFTQPVDPNWVREKLELGG 981 + A ++ TP PR A + GT LH+ E LD + + + Sbjct: 924 V---EAWDQEPADDAEATPGALPRDAALAVGTALHATMEALDLSDDGEVESMARAKAAEA 980 Query: 982 FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 + A L + GV +A E F LP+ + Sbjct: 981 GVPGHADEVAALARACLAS-----GVVQRARAAERAAREAAFTLPVGD------------ 1023 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 1101 G ++G +DL+FR + DYK++ + + Sbjct: 1024 ------------------GFVEGRVDLLFREPDGLVIADYKTDRVTPEQVDARLAV---- 1061 Query: 1102 MQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLR-GVDKEHP 1151 Y Q +Y A+ + + V+++F R GV++ P Sbjct: 1062 -----YRNQAAVYAFAVAEVTGLPVKE---------VVFVFARAGVERAIP 1098 >UniRef50_UPI0001C37CA2 recombination helicase AddA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CA2 Length = 1213 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 209/1279 (16%), Positives = 436/1279 (34%), Gaps = 203/1279 (15%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ + + + ++ A+AG+GKT + ++L+ + + ++ Sbjct: 1 MAWTEQQQNAISARGS-SVIVSAAAGSGKTAVLTERLVQLMAD------PESGVRADRIV 53 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 VVTFT A +EL+ R+ + L +++P LL + Sbjct: 54 VVTFTNDAASELKKRLDMKLRALI-------SEDPSNGHLLRQQT--------------L 92 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPRE 178 + A + TI+ FC ++ N + G+ ++++ L+ +A + + + Sbjct: 93 LQSAKISTINSFCFDLIRDNISDQGITTGFGVLDESDNTVLKARAMDELFEEMSRDEYDK 152 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR---------- 228 I+ + + + LR++ + G + +TL S + + + Sbjct: 153 ISFLYDKFCIRNEKRLREVISLMDGFLASVSLREKWLDTLTSEYEKPLEDSVYYEKLRVS 212 Query: 229 ----IDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAW------------ 272 ++ + + + + + + DK+S Sbjct: 213 VASILEKALRTADSCMALIGRIFPDMSAAAAVKSAAQAEDDYDKVSDLLAIIRKGRIPDS 272 Query: 273 --AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLA-EPLSIRDLVIT 329 E ++ L + + L + K E+ + + +AID + + E ++ Sbjct: 273 EECERASSFSDLVRVGKTAHDKPLREMYKKKRESVKKLVLKAIDSIRSVESDYAESAEVS 332 Query: 330 RALAEIRETVA----REKRRRGELGFDDMLSRLDSALRSESG------EVLAAAIRTRFP 379 + LA++ K + + FDD L A + Sbjct: 333 KMLADVMRKYQDIVWAMKCEKNSISFDDGERLALELLADTDENGNIIQSEAALKTSEYYD 392 Query: 380 VAMIDEFQDTDPQQYRIFRRIWHHQP---------ETALLLIGDPKQAIYAFRGADIFTY 430 + MIDE+QD++ +Q IF+ + + + L+GD KQ+IY FR A+ + Sbjct: 393 IIMIDEYQDSNNKQDLIFKLLSKNYRTDENGQPLYGDNVFLVGDVKQSIYRFRLANPRNF 452 Query: 431 MKARSEVH----------AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 + L+ N+RS+ +++ VN +FS+ K Sbjct: 453 IGTLKSAEPYSVESDAPIKSILLNRNFRSSENVIDFVNYVFSEVMSEKCGDIDYSDDEKL 512 Query: 481 AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 + R + +++ + + + + A A I + L G ++ Sbjct: 513 YFGAEYYRGISDEKSRTVINFINDDADEEEEDGNINKEAVFTAQTIAEMLHKGTE---VV 569 Query: 541 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL 600 N RP R SD +LVR+ + + L+LL +P+ S + E ++ LL Sbjct: 570 GNDGSTRPCRPSDFCILVRNNVHINKYAEQLSLLGVPAK-GSEESGYLRSREIAVLIDLL 628 Query: 601 QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAW---------------------- 638 + V P + + + + + M + ++ + + E Sbjct: 629 RVVSNPLLDIPMAAVMTSPMYMFSIRELAYIRSLEKGRPLYSVLRGLADGEYEECFDMFL 688 Query: 639 ----DVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694 ++ D +R + ++ ++ + + + GE++ ++ + + Sbjct: 689 RERCRDFLDSLDSFRMDSVTMTIGELISSIYDTTDFISVMQLYSDGEKKRANLRALIQYA 748 Query: 695 Q--EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLV 752 Q E E L +L ++ +Q S V ++T+H+SKGLE+P V Sbjct: 749 QSYEESAAFEGSGGLGGFLRHLDKVMENGDYAQGKVAASSGDYVSVLTLHRSKGLEFPFV 808 Query: 753 WLPFITNFRVQEQAFYHDRHSFEA---VLDLNAAPESV--------DLAEAERLAEDLRL 801 ++ + + A + D + E + +E++RL Sbjct: 809 FIAETSTKFQYDSDIVMCSSDGRAGYILYDPKIYRKYRTFQQSILASEEERDTRSEEMRL 868 Query: 802 LYVALTRSVWHCS--LGVAPLVRRRGDKKGDTDVHQ------------------------ 835 LYV LTR+ L +R K ++ + Sbjct: 869 LYVGLTRAKQKLFVDLKCGEKAMKRVRSKLESCIINDGDISEIVAEADYFSDWIWAALMH 928 Query: 836 ----SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK 891 SA+ L E ++ C E L D A + ++ + E Sbjct: 929 HSDFSAIAEKLGLTEAGESVPDVRCEEKLFDCVFAENISPVYIDRDEAAEKTTADEAVYT 988 Query: 892 TLQRLPGDNWRVT-SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTL-TPHQFPRGA 949 L+ L D++ T S + ++ +L ++ ++ P T G+ Sbjct: 989 ELEELVSDSYDRTLSET----PAKLSVTEITKKLKQESDNFDYKLKRPRFITGSGKLTGS 1044 Query: 950 SPGTFLHSLFEDLDFTQP-VDPNWVREKLELGGFESQWEPVLT--EWITAVLQAPLNETG 1006 GT +H+ F+ DF D + E + GF + + + E +A + L + Sbjct: 1045 ERGTAIHTFFQYCDFDNAQADVSAEIEAVAKRGFITSAQADVISPEKASAFFASGLYKRI 1104 Query: 1007 VSLSQLSARNKQVEMEFYLPISEPLI-ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 + E +F + +++ I + LD L + GM+KG Sbjct: 1105 RAAGD----KVWREKKFMVAVADLDIGSDALDQLKKSD----------------GMIKGI 1144 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 +DLVF + ++DYKS+ + + RY +Q LY A + + Sbjct: 1145 MDLVFEEDDGLIIVDYKSDRGASAKA-----------LSERYSMQLTLYKAAAELTMHKK 1193 Query: 1126 IA-DYDYEHHFGGVIYLFL 1143 + Y Y I +FL Sbjct: 1194 VKAAYLYSFELEKEIEVFL 1212 >UniRef50_B0CJK2 Double-strand break repair helicase AddA n=35 Tax=Rhizobiales RepID=B0CJK2_BRUSI Length = 1180 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 203/1194 (17%), Positives = 382/1194 (31%), Gaps = 166/1194 (13%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 + A+AG+GKT + +RLLL ++L +T+T+AA Sbjct: 15 QARAADPSASVWVPANAGSGKTHVLTERVIRLLLE---------GTDPSKILCLTYTKAA 65 Query: 69 TAELRGRIRSNIHELRIACLRETTDN-PLYERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A ++ R+ + E + + ER A A + A + Sbjct: 66 AAVMQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQ 125 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFE 185 TIH FC+ +L+ E+ + ++++D ++ L +A +A + Sbjct: 126 TIHAFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAD 185 Query: 186 TWK-----GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + G Q+LL + G + + + H D + + Sbjct: 186 VLQAAGETGLQSLLDEAVGRRNGLQLYLAELGVGTHRMEALHRAFGFEPDAREDDLLADL 245 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE----- 295 + + + + A + + + LP+ + FL+ Sbjct: 246 WPVPEFSDDALDLILSIPKG--ASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTGEP 303 Query: 296 --------DRTKAGGETPRHPLFEA-------IDQLLAEPLSIRDLVITRALAEIRETVA 340 K A +D+L L +L + + + Sbjct: 304 KSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELRLVRLNLAALTLIDNLLQRYH 363 Query: 341 REKRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRR 399 K RRG L F+D+++R + L R+ +G+ + + ++DE QDT P Q+++ R Sbjct: 364 DLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRM 423 Query: 400 IWHH--------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----------AHY 441 + + L +GD KQ+IY+F+GA + + + Sbjct: 424 LSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAELKFERV 483 Query: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL--RFVFKGETQPAM 499 +L+ ++RS P ++ +V+++F++ + + + + E Sbjct: 484 SLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPEMVEEP 543 Query: 500 KMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVR 559 W + + + +A+ AA IR WL G+ R + DI VLVR Sbjct: 544 DDWRVPVDQLAAPAVR--LAEQIAATIRYWLDRGEPIP------GQNRKIAPRDIMVLVR 595 Query: 560 SRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALAT 618 R + + AL L +P V ++R + + Q+++ L + V+ P + +L + L + Sbjct: 596 KRDQFMPALSRALKNLSVP-VAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLAALLKS 654 Query: 619 SMMGLNALDIETLNNDEHAWDVVVE-----------------EFDGYRQIWRKRGVMPML 661 + G + + TL A D + E +R + V Sbjct: 655 PLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMPVFEFY 714 Query: 662 RALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ-LESEHALVRWLSQHILEPDS 720 ++SA LLA G E +++ E L +E A + L + ++ Sbjct: 715 ARVLSADGARRKLLARLGPEA--------GDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 721 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF----ITNFRVQEQAFYHDRHSFEA 776 A + L+ + V+I+T+H +KGLE +V+L + + +D Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGP 826 Query: 777 VL-----------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 825 + ++ + E RLLYV +TR+ + R G Sbjct: 827 PVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESG 886 Query: 826 DKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVST 885 + A A R +I + + P +D Sbjct: 887 ETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGATSLPPLPHDYRQ 946 Query: 886 AELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF 945 L R + S L + D P LD+ + + P Sbjct: 947 PMKAEPGLPRPLAPSGA----SALIEA------DEEPPLDLSSPVLQPGTGAPAFAL--- 993 Query: 946 PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNET 1005 GT +H L E L P + + W + A L++ Sbjct: 994 ----RRGTAIHMLLEYLPDVAPEKREHLAADYLAR-IAADWPDAERLKAWQSVHAILDDP 1048 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 +V + + I A + G Sbjct: 1049 RFGPVFAEGSRGEVAVMGMIDIGGRDHA----------------------------VSGQ 1080 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 ID + E R ++DYK+N + A Y Q LY L Sbjct: 1081 IDRISVDESRVLIVDYKTNRPPPKTLEAVPSA---------YRAQLALYRELLR 1125 >UniRef50_A7HPC8 Double-strand break repair helicase AddA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPC8_PARL1 Length = 1156 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 210/1180 (17%), Positives = 378/1180 (32%), Gaps = 164/1180 (13%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + + A+AG+GKT + RLLL + +L +TFT+AA AE+ Sbjct: 21 PETSVWVSANAGSGKTHALTTRVARLLL---------AGTDPQRILCLTFTKAAAAEMSA 71 Query: 75 RIRSNIHELRIACLRETTDNPLY-ERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 R+ + E + + L E + A Q A + TIH FC Sbjct: 72 RLYKRLGEWAMMSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPGGLKIQTIHAFC 131 Query: 134 QRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQ 191 +R+L E+ + + +++++ L + RR + Q + Sbjct: 132 ERLLGRFPLEADVPPQFEILDERAAQELMDEVRDAVLRRAGGEADTALGQALSHVVSRVD 191 Query: 192 ALL-RDINRYLQGEAPVIKAPPPDDETLASRHAQIVAR-----------IDTVKQQWRDA 239 L + + + + LA HA I I +A Sbjct: 192 ELAFGKLLKEVTDQRGNFAKMMDRFGGLAGIHAAIRIALSVGADETTPGIRVEIAALPEA 251 Query: 240 VGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEE-ETNSYQLPESLEKFSQRFLEDRT 298 A + +SG ++ ++ AE +T K R + Sbjct: 252 AMHNAAEVLASGTKTDVKCAEALRAFLGARASRAENLDTYLGIFLTKEMKPRARLVTAAL 311 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDL-------VITRALAEIRETVAREKRRRGELGF 351 L ++++ +R + I EI ET + K R L + Sbjct: 312 AKKHPDVEQELLAEQERIIRLHARLRAIGVAEATEAIVTLAVEILETFDKAKHARALLDY 371 Query: 352 DDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH------- 403 DD++S+ L + + + +IDE QDT P+Q+ I R+ Sbjct: 372 DDLISKTRDLLTMRAMAPWVLYKLDGGIDHILIDEAQDTSPEQWDIIARLADEFLSGSGA 431 Query: 404 -QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPG 452 + +GD KQ+I++F+GAD + + L ++RS P Sbjct: 432 RGVVRTIFAVGDEKQSIFSFQGADPARFDDMKIYFERRVKASEQRWDYVPLTRSFRSVPE 491 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPVK------SAGKNQALRFVFKGETQPAMKMWLMEG 506 ++ +V+K+F + + AG + E Q A W Sbjct: 492 VLAAVDKVFESLKARSGLTASGNLDIHIAHRELDAGLVEIWELEEPDEGQEASP-WDAPL 550 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA-A 565 + + +A AA IR+WL + + + RP+RA DI +LVR R Sbjct: 551 DYMTEAAPMAKLAARIAATIRNWLDSKE------VLISKGRPIRAGDILILVRRRNAFVG 604 Query: 566 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 ++ L L +P V ++R + E L ++L L + V+ PE + TL + L + G Sbjct: 605 EMVRHLKELGVP-VAGADRMVLTEQLAVMDLLALARFVLLPEDDLTLATVLKSPFAGFTE 663 Query: 626 LDIETL--NNDEHAWDVVVEE-------------FDGYRQIWRKRGVMPMLRALMSARNI 670 ++ L N W + E+ + ++ Sbjct: 664 EEVFDLAWNRKGTLWQSLKEKATRNPRYAEAAAFLLRLLERADYEPPYEFFAHVLGGEGG 723 Query: 671 AENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLE 730 LLA G E +S L+ + A V WL + +S + ++ Sbjct: 724 RTRLLARLGPEAADPIDEFLSLALEFERKHPPALEAFVHWLER-------GSSEIKRDMD 776 Query: 731 SDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-------YHDRHSFEAVLDLNAA 783 + V+++T+H +KGLE +V++P + + Sbjct: 777 QGRDEVRVMTVHGAKGLEAEIVFMPDTCAAPGGSHDPALLSLPALEQDGPKLLLWPVRKK 836 Query: 784 PE------SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSA 837 E + L + AE RLLYVALTR+ + + V ++ Sbjct: 837 DEDEVSAGARALHREIQAAEYRRLLYVALTRARDRLYISGYRNATPPSSECWYEMVCETL 896 Query: 838 LGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLP 897 L D + W+ Q + E +A Sbjct: 897 --------------KPAAREIVLPDGRMVWRIEGEQRRQVDSKAPSAAEEPSAPPEWAHR 942 Query: 898 GDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHS 957 T +A +P D++ V S + G+ +H Sbjct: 943 DAPLEPT-------PSRPLAPSRLPPEDLEEPSVLSPLAGDNTNRF------RRGSLIHR 989 Query: 958 LFEDLDFTQPVDPNWVREKL---ELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSA 1014 L E L +P + + G + + + + VL +++ + Sbjct: 990 LLESLPDMEPAERRAAARRFLAQPAHGIDEAAQNEIEAAVFRVL------DDATIAHVFG 1043 Query: 1015 RNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG 1074 + + E+ P++ + LI G ID + E Sbjct: 1044 KGSRAEV----PVAGTIELGGRPLLIA----------------------GQIDRLCVTED 1077 Query: 1075 RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLY 1114 ++DYK+N + A M A+R L +Y Sbjct: 1078 SVTIIDYKTNRPPPQTLEAVVPAYIGQMAAYRALL-AAIY 1116 >UniRef50_B0SIS6 Exodeoxyribonuclease V, beta subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS6_LEPBA Length = 1209 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 269/1242 (21%), Positives = 477/1242 (38%), Gaps = 126/1242 (10%) Query: 11 LRLPL-QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69 + PL IEASAGTGKT I + ++ + L + LV+TFTE A Sbjct: 3 MDHPLVNHPNFIEASAGTGKTHLIMQMLGDVMTHDVTNHTKENRLL--QFLVLTFTEKAA 60 Query: 70 AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTI 129 EL+ R++ I EL E +P Y R +D+ + TI Sbjct: 61 GELKARLKLKILELY-----ENGKHPEYYHY-----------------LRDLDQVTISTI 98 Query: 130 HGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA--QVVFETW 187 HGFC +L E+ +L +E L + D R +E ++ Sbjct: 99 HGFCNMVLTEYPVETQNNPNVKLTSNE-ELIRKTFYDLKRSQWEGRDKESLANDILISNL 157 Query: 188 KGPQAL-LRDINRYLQGEAPVIKAPPPDDETLAS------RHAQIVARIDTVKQQWRDAV 240 K + L + ++ L + E +++ + K +A+ Sbjct: 158 KKKEDLVISSTSKLLADTKDYVFPEFVSLEECIHNANKSNLLGELITICEAFKGPTGEAI 217 Query: 241 GELDAL--IESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRT 298 A I + +A + A+E +L SL K + D Sbjct: 218 AAQGAKGSIPKWMENWSSLESFAKAIRNEDTKYIAKELKRISKLSRSLGKEGKASGFDYF 277 Query: 299 KAGGETPRHPLFEAIDQLLAEPLSIRDLVITRAL--------------AEIRETVAREKR 344 G T +A +L + L + + E ++ K Sbjct: 278 LLEGSTTIAKNLDAASVVLQGKIKSVVLSLKEIFPLGQLDYDGSIFLQNTVHELTSKTKS 337 Query: 345 --RRGE-LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW 401 GE L +D M+ ++ + ++L ++R RF V ++DEFQDTD QY+IF+ ++ Sbjct: 338 IIENGEYLTYDQMILKVYDVIVRNPNQILIQSLRERFQVCILDEFQDTDKNQYQIFKTLF 397 Query: 402 HHQPETA--LLLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVN 458 + + L IGDPKQ+IY FRGADI Y++A + TL+TN+RS +++ +N Sbjct: 398 LDKDTKSRMLFCIGDPKQSIYGFRGADIGIYLEASRDFEGSKSTLETNYRSTKELIHGLN 457 Query: 459 KLFS------------QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +F ++ +E S+ +++ + + A+ ++ E Sbjct: 458 TIFHDETKEWGETHFFPIEEPGSSKENYLYKKVSSPDIDTIKYKYVNPEESAIHIFDFEE 517 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 V ++ A+ +I+ + + ++ DI++L +++E Sbjct: 518 RFPNVNKSRNIWAETIRNEIKRIQNKETSLLYNKKGEREIQEIKLKDIAILCGNKKETEL 577 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 V LT IP R ++++ EA ++ LL+ + + + + L + + ++ Sbjct: 578 VEFYLTKAGIPCSIYKQR-GIYQSREADQIENLLECLQSSNSSQSYKKILFSDIFCIHPH 636 Query: 627 DIETLNNDEHAWDVVVEEF-DGYRQIWRKRGVMPMLRALMSARNIAENLL-ATAGGERRL 684 +I+ DEH+ D + D ++++ ++ R++M + T ER+ Sbjct: 637 EIQKF--DEHSIDSYEKSLIDKWQRLIKENRYASFFRSVMDETKLFWLEGNHTLEWERKR 694 Query: 685 TDILHISE-LLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHK 743 T+ I + LL+ L+ L + + S E+++ VQI+TIH Sbjct: 695 TNFRQIFQKLLEVQLKSNCGLLELLASLRELKQKKQSPEEEPLFDRETEEDSVQILTIHA 754 Query: 744 SKGLEYPLVWLPF-------ITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLA 796 SKGLE+P+V+L + +TN + + + +LDL + E L Sbjct: 755 SKGLEWPVVFLFYFGNRGTNLTNTEYPIEIETPEGKKRKWILDLWDLNPEKEDEENHFLN 814 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 E RLLYVALTR L R + + + L + L + + Sbjct: 815 EQKRLLYVALTRPNLRLYLPKLNWGRSKKEDSLPNSGYSQILYQELIRIQTLQNQNPFLE 874 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR-LPGDNWRVTSYSGLQQRGHG 915 + + + +QT + Q V G SY+ LQ Sbjct: 875 SSFVFRNPNEFSESQTINLQTSSVTQTKKPSFPILYPSEIKIGRVLLQHSYTSLQANEKN 934 Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT---------- 965 L + + + T + P A G FLH + E DF+ Sbjct: 935 ----LNVSQEEKKKELEETPDVEVSTTFELPSSAKVGNFLHKILELCDFSTFQLEVDAIL 990 Query: 966 ------QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL---NETGVSLSQLSARN 1016 +++R LE+ G +++ E + + + A + SLS+L Sbjct: 991 ESPSWKWAYQKSFLRYPLEIEGKDAKIEHTVATLLKHAMTAKIKLATGNSFSLSELKEEE 1050 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 K E++F+L + L S LKG IDLVF + ++ Sbjct: 1051 KSAELKFHLFLQNLLKESG----------------ASLTDGFEHYLKGAIDLVFVKDQKF 1094 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 Y++DYKSN L + Y+ +A+A A++ Y Q +Y+ L YL+ FG Sbjct: 1095 YIVDYKSNLLPNN--DYSSEAVANAVRDKGYLFQKSVYSFILFEYLKSLFGPDIALEKFG 1152 Query: 1137 GVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLE 1178 GV YLFLRG+ ++ Q GIY+ ++ + +++ F G+ E Sbjct: 1153 GVYYLFLRGMLGDN-QTGIYSDLKHSDSVWTIEQ-FEGIKKE 1192 >UniRef50_B9R0C4 Double-strand break repair helicase AddA n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R0C4_9RHOB Length = 1180 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 201/1204 (16%), Positives = 384/1204 (31%), Gaps = 165/1204 (13%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 D+ L + + A+AG+GKTF ++ +RLLL +L + Sbjct: 17 DLTRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLD---------GTDPSRILAL 67 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPLY-ERLLEEIDDKAQAAQWLLLAERQM 121 TFT+AA AE+ R+ + + E + A A + A Sbjct: 68 TFTKAAAAEMATRVFKILGTWVTMDDADLAKELFEIEGRHPDAARIAMARRLFARALETP 127 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREI 179 + TIHGFC+ +L+ E+ + +++D + L +A A + Sbjct: 128 GGLKIQTIHGFCEALLHQFPLEANVAGHFNVLDDRIAAELMAEARASVLHKAEMEPDSPF 187 Query: 180 AQVVFETWKG-PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID-------- 230 Q + + L + D L + ++ Sbjct: 188 GQALASVIDLMSDGGAQKALDELIQNRDAFRRWTVDAGGLEPALHALADDLEIDPAQQLS 247 Query: 231 TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFS 290 +++R S +++Q K ++A + + ++ L F Sbjct: 248 DFDRRFRSECPFDLNTCLSYSEALNTGTKTDQGKAEALVAAIRQTDPGLFREA-WLPVFL 306 Query: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDL--------------VITRALAEIR 336 LE R + + +D L+AE + +L + R + Sbjct: 307 TGKLEARKSLATKKVTEAFPDMVDALIAEQARLLELLDERRKVVTYAGTVALLRLADAVI 366 Query: 337 ETVAREKRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 R K +G L F+D++ + + L +S++ + + + ++DE QDT P+Q+ Sbjct: 367 TYYERAKTAKGYLDFEDLVVKTATLLAKSDAAQWVQYKLDQGLDHILVDEAQDTSPRQWE 426 Query: 396 IFRRIWHH--------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------- 440 + + + L +GD KQ+IY+F+GA + + R Sbjct: 427 VVNALAAEFFVGDSGREKVRTLFAVGDEKQSIYSFQGAVPAYFDQMRRAFSRQAQSAEQE 486 Query: 441 ---YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA----LRFVFKG 493 L ++RS P ++ +V+++F + PV A + L + Sbjct: 487 FHSVNLQLSFRSTPDVLGAVDEVFKDASAYQGLSQDGVAPVHEAIRLDPGIVDLWPLETE 546 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 W + + G G +A+ A+ I+ W+ G D Sbjct: 547 AEVSEPDDWRLPVDHVGSGSPMLKVAKRIASTIKGWMLDGT--------------AEPGD 592 Query: 554 ISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 + +LVR R + L L IP+ S+R + + + Q++ L + ++ PE + +L Sbjct: 593 VMILVRKRGPFVEALNRELKNLNIPA-AGSDRLILTDHIAVQDLAALGRFLLLPEDDLSL 651 Query: 613 RSALATSMMGLNALDIETLNND-------EHAWDVVVEEFDG---YRQIWRKRGVMPMLR 662 + L + + GL+ +D+ + + W ++V+ + ++++ R+ Sbjct: 652 AAVLKSPLFGLDDMDLLEVARETDEKIRPGTLWQMLVKRSEASTKWQEVRRQLEDWRARA 711 Query: 663 ALMSARNIAENLLATAGGERRLTD---------ILHISEL-LQEAGTQLESEHALVRWLS 712 + LL GG + + L + + W++ Sbjct: 712 DFVPPYEFYARLLGADGGRQAFRRRLGVEVDDVLDEFLALTIAYEQAGTPGLEGFLAWMA 771 Query: 713 QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFR---------VQ 763 + + + L + K +V+I+T+H SKGLE +V L + Sbjct: 772 -------AAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGGAPVSAIHDPSFLP 824 Query: 764 EQAFYHDRHSFEAVL------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGV 817 HD V ++ E+V+ + E RLLYVALTR+ + Sbjct: 825 RPRPGHDLSPPSLVWLPPKTDRISWHDEAVETLRKGQEEEYRRLLYVALTRAEDRLIVCG 884 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 R D + V + L + + A D A P Sbjct: 885 WEPKRGAHDNCWYSLVSAA----LKPQAKELHDADGDVVGWRWQKDPSAGTGRAPSPGHP 940 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 VS + P S + A + M D A Sbjct: 941 RTDASVSGDDHTLPDWAHQPVKP-----VSRKIRLQPSKAFEDMEDKDGIEPVPAVARLA 995 Query: 938 PTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAV 997 P +P G +H L E L L + E L + + V Sbjct: 996 AGRQPDSWP--LERGRLVHRLLELLP------------DLPAASRMAAAEAFLDQALKPV 1041 Query: 998 LQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQ 1057 L +L+ ++ E + + + T+ Sbjct: 1042 FA---PFKDTLLKELAQVLEKPEFQPVFSENSRAEVALTGTIRSANGTDVE--------- 1089 Query: 1058 VRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLA 1117 + G ID + ++DYK+N ++ Y Q +Y Sbjct: 1090 ----VSGQIDRLIVDGNEVVIVDYKTNLQPPETLDQVPLE---------YRAQLSVYKEL 1136 Query: 1118 LHRY 1121 L + Sbjct: 1137 LRQI 1140 >UniRef50_D1PLS3 ATP-dependent deoxyribonuclease subunit A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS3_9FIRM Length = 1160 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 217/1200 (18%), Positives = 375/1200 (31%), Gaps = 170/1200 (14%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + + ++ P+ + LL++TFT AA A+LR I Sbjct: 22 GSLLVSAAAGSGKTRVLVERVVGMITD------PQHPVEADSLLIMTFTNAAAAKLRADI 75 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + + A L A++ T+ FC Sbjct: 76 ATRLADEVRAHPGNVRLRRQQLLLQR---------------------ASIGTVDAFCLHF 114 Query: 137 LNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 + + + + + E+ L + + AD +++ + Q Sbjct: 115 VQQHFAALDVPPDFETAEEADLARIEQEVLADLLEEAYEDPDFRAFADLYDRGRTDQTAG 174 Query: 195 RDINRYLQGEAPVIKA--------------PPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + + PP +I Q +A Sbjct: 175 NAVLELYHFSRSLPHPMQALQSFADQWQNGEPPQTTPWGKDLLRIALDRARGAQALLEAG 234 Query: 241 GE-----------LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE-- 287 A+++ + Q D A EE S++ ++ Sbjct: 235 ARTAARDEAADAAYTAVLQDDVSRVEWLCQKLQQGDWDAAVAALEELGGSWRKAGRIKGG 294 Query: 288 ------KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA- 340 F+ L DR K R + E R + AL I + A Sbjct: 295 KDSNPVAFAASELRDRAKKQIAALRTDFLLCTAEEYQE-DRRRAAPLVAALVRITQRFAD 353 Query: 341 ---REKRRRGELGFDDMLSRLDSALRSESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYR 395 K L + D L + G L + R+ ++DE+QDT+ Q Sbjct: 354 ACFAAKCEEKLLDYADFEHLTLDLLIAPDGSRTPLCHTVSERYSAVLVDEYQDTNALQDA 413 Query: 396 IFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS---------EVHAHYTLDTN 446 I+ + + + L +GD KQ+IY FR AD ++ + A LD N Sbjct: 414 IYFALASPEAD-NLFFVGDIKQSIYRFRQADPAVFLGKQQCWQPYPQPAPQPATLALDAN 472 Query: 447 WRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG 506 +RSAP ++ +N LFS F + + + + + + Sbjct: 473 FRSAPQVIEGINYLFS----VFFSEGLGGVTYGDGQRLVVGKPDVSYPGLCEVDVLDGAD 528 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 + A +I +Q G + + RP R D +L+R R + + Sbjct: 529 AAGDAA--------GIAQRIAGMMQEGFA----VRDKTGTRPCRYDDFCILLRGRADFSI 576 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 +AL EIP V+ + + + LL+ + P ++ L + L + M Sbjct: 577 YEEALRAAEIP-VFADTAADLLDAPHIRPFAALLRVIDNPAQDIPLAAVLLSPMFPYTPD 635 Query: 627 DIETLNN--------------DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAE 672 D+ +L + + E YR++ R V +L L++ Sbjct: 636 DLVSLRRACPQGSLYGAVLYGGQPRFAAFTESLAEYRRLARTLPVDRLLEELLARTGYLA 695 Query: 673 NLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD 732 + A G R D+L AG ALVR + N S Sbjct: 696 AVGALPDGARCREDLLTFVTWAGGAGR--AGLSALVRAMDSAAANGGLNQSGGGQTRP-- 751 Query: 733 KHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA----FYHDRHSFEAVLDLNAAPESV- 787 V I+T+H+SKGLE+P+V++ + Q A H R +L + + Sbjct: 752 -GCVSIMTVHRSKGLEFPVVFVANTAHQFNQSDAIRPVLTHSRLGVGVMLRAGKSAKRYK 810 Query: 788 --------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALG 839 E L+E++R+LYVALTR+ + + K A G Sbjct: 811 TLPYAALAQAIRTETLSEEMRVLYVALTRAQDALIVTIPLKKTDSALKTPALCAAAEATG 870 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD 899 +G A L T + + D W + ++ L A Sbjct: 871 PEAMQGMSSWAGWLLTAVLLHPESDALWAHTPLLPHHLPTKVPLTVRLLPAPEAMPEQPP 930 Query: 900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV------------ASVVEEPTLTPHQFPR 947 V L++ PR + +E P Sbjct: 931 CLEVQPDVSLRRALEETFAWHNPREKLQKIPAKVSVSAVTHGARPVALERPAFLQKSGMT 990 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGV 1007 GA GT +H+ + + F P ++ +++ + L E + P E+GV Sbjct: 991 GAERGTAIHAFLQSVPFDGPA--PDLQAEVQRQKDLRLLDADLAEKLDLERVRPFFESGV 1048 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 +AR E F + P S P +++G D Sbjct: 1049 WRRIRAARRVLREEPFITAL-----------------PASQVAPEAGQSDAEVLVQGIAD 1091 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIA 1127 LV + + DYK++ + Y ++ Y Q QLY A L + Sbjct: 1092 LVLVFDDHAEICDYKTDA-SREPEFYKKE----------YAAQLQLYRHAFALRLGVPVT 1140 >UniRef50_A8STY9 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8STY9_9FIRM Length = 1303 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 200/1337 (14%), Positives = 411/1337 (30%), Gaps = 273/1337 (20%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLG---LGGSAAFPRPLTVEELLVVTFTEAATAELR 73 G L+ A+AG+GKT + + ++LG G + V+ELLVVTFT AA A+++ Sbjct: 21 GNLLVAAAAGSGKTAVLVERIIEMVLGVDSNGNKLPDQDRVNVDELLVVTFTNAAAAQMK 80 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFC 133 +I + + + + + L+ ++ A + TI FC Sbjct: 81 EKISAALQKKIDEYMANGIYDE-----------------HLIKQMTLINHAEICTIDSFC 123 Query: 134 QRMLNLNAFESGMLFEQQLIEDES-LLRYQACADFWRRHCYPLPR--------------- 177 ++ + + + + + + D CY Sbjct: 124 LHIVKEYFAKVQLDSAFDIADKTEMEIIKKDVMDKVMESCYQDENLVPGFIKLVRTFAVK 183 Query: 178 ----------EIAQVVFETWKGPQALLRDINRYLQ---GEAPVIKAPPPDDETLASRHAQ 224 V ++ +RD L E + + Sbjct: 184 ERDTEVPALVTHLMQVISSYPDRHGWIRDARAALDIQVREGASFEEKCDAVMNIPMVRLF 243 Query: 225 IVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPE 284 TVK A E G+ A+ + + + +S Sbjct: 244 AERARQTVKIAHDMACECQLYATEEYGLKSYGDRVDRDAEMLTHMLRECDPVAHSSVNLF 303 Query: 285 SLEKFSQRFLEDRTKAG----------------------GETPRHPLFE----------- 311 L+K + L + + + + + Sbjct: 304 ELKKIYKASLRPKNEKVSVDASGNKIYYAFDSLAVTSRDADPEKKAFVKNRRDVYKGMIT 363 Query: 312 -------AIDQLLAEPL--SIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362 +D++L + + + + + + K + F D+ L Sbjct: 364 ELMSAITEVDEVLGQLNITAPVLGALLDLTELYMDELMKVKMDKNLFEFHDIEEFAFRIL 423 Query: 363 RS--ESGEVLAAAIRT----RFPVAMIDEFQDTDPQQYRIFRRIWHHQPE-TALLLIGDP 415 E G + + R+ IDE+QD++ Q I + H ++GD Sbjct: 424 CDGIEDGRPVPSKAGREVSLRYREIFIDEYQDSNFIQEYILGSVAGHGENINNTFMVGDV 483 Query: 416 KQAIYAFRGADIFTYMKARSEVHA--------------HYTLDTNWRSAPGMVNSVNKLF 461 KQ+IY FR A ++ + L N+RS ++ +VN LF Sbjct: 484 KQSIYKFRMARPDLFIGKYNTYQRLGDDDKASADMIGNCIILTRNFRSEINVLRTVNALF 543 Query: 462 SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQ----------PAMKMWLMEGESCGV 511 Q +EI I A + + + + P ++ +++G++ Sbjct: 544 EQLMR----KEIGGIEYDDAARLNSKYALEDPHGRMSEPGDVYQGPKSELIMIDGDTVSG 599 Query: 512 GDYQ-----STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 + A+ A +I + + + R V SDI +L+RS +A Sbjct: 600 DMDEDYSCAQIEAKYIANKIHEIVDGDDPMYIHDGD-GTVRKVEYSDIVILLRSVSGSAT 658 Query: 567 VRD-ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625 V D IP +Y+ + F +E ++ +L + + L + L + M+G++ Sbjct: 659 VFDQVFEDEGIP-IYIQSESGYFGAVEVSCLVSMLSVIDNSYVDGDLAAVLRSPMVGMDE 717 Query: 626 LDIETL-------------NNDEHAWDVVVEEFDG------------------------- 647 ++ + + + +D +++ + Sbjct: 718 EELARIVGEYRTRYEIDGRDYNVRLYDKLIDYLENHDDEGQGECAGLDDMAKSSAAIGDE 777 Query: 648 ----------------YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 ++ + ++R ++ + A G RR +I + Sbjct: 778 DKLIGKVRAFVGMLDYLKENKNFMSLSDIIRYVLDQTGFYWFVGARPMGRRRQANIDMLI 837 Query: 692 ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPL 751 + + + +R++++ L+ +S ++ + + +V+++T+HKSKGLE+P+ Sbjct: 838 KKADDFEKNSKGVFNFIRYVNE--LKTNSLDFAEADIVSDNDDVVRVMTMHKSKGLEFPV 895 Query: 752 VWLPFITNFRV----QEQAFYHD---------RHSFEAVLDLNAAPESVDLAEAERLAED 798 +++ + Q++ H D E AE+ Sbjct: 896 LFVAGLGKSFNMKDVQKKVLVHQQYYLTASAIDADARVKRDTFLRNVMASEMRVENYAEE 955 Query: 799 LRLLYVALTRSVWHCSLGVAPLVRRRGDK------------KGDTDVHQSALGRLLQKGE 846 LR+LYVALTR+ + P + + +S L + Sbjct: 956 LRVLYVALTRAKEKLYMTGCPKSLDKFKENCGIYAIGSEMSSAALINGKSFLSWIYTALS 1015 Query: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNA------KTLQRLPGDN 900 D E D + E + +++ Sbjct: 1016 YIDHEEFLDVNEIKSSDFVHTDAVSLTSKTENSDEMEILDETEGLDKEVFEQIRKGIDFR 1075 Query: 901 WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP-----------RGA 949 + S SGL+ + + + D + E P G Sbjct: 1076 YGHVS-SGLKSKMSITEIKKLQAMYDDTEYIDMGRERKYAERKSAPAPKFMSGEKTIAGN 1134 Query: 950 SPGTFLHSLFEDLDFTQPVDP---NWVREKLELGGFESQWEPVL-TEWITAVLQAPLNET 1005 GT H + E DF Q + V LG F+ + + + I +L + L + Sbjct: 1135 EIGTVYHKIMELADFRQTTEAGIYADVERIFGLGLFDDGYREKIKADKIVKMLGSSLGQR 1194 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 + + L + E +FY+ ++ I G + +++G Sbjct: 1195 MAA-ADL-RGDLYRERQFYMMMTPGEIL---------------GRSEKDKTDETIVVQGI 1237 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHR 1125 ID F +G+ L+DYK++ + + +Y +Q Y L + + Sbjct: 1238 IDAYFIEDGQIVLMDYKTDSVKKS-----------EELVRKYHVQLDKYADVLEQLTGMK 1286 Query: 1126 IADYDYEHHFGGVIYLF 1142 + + +IY F Sbjct: 1287 VKEK--------IIYSF 1295 >UniRef50_Q2VZK9 ATP-dependent exoDNAse beta subunit n=4 Tax=Alphaproteobacteria RepID=Q2VZK9_MAGSA Length = 1154 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 208/1189 (17%), Positives = 378/1189 (31%), Gaps = 170/1189 (14%) Query: 14 PLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELR 73 + ASAGTGKT + L LLL ++L +TFT+AA AE+ Sbjct: 20 DPTASVWVAASAGTGKTKVLTDRVLTLLL---------AGTPPHKILCLTFTKAAAAEMS 70 Query: 74 GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQ---AAQWLLLAERQMDEAAVFTIH 130 RI + + A + D+ RLL + A + + TIH Sbjct: 71 NRIAGRLGQWATAHDSDLADD--LGRLLGRAPSPGEMTGARRLFAALLDAPGGMHMETIH 128 Query: 131 GFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFETWK 188 FCQ +L E+G+ Q+++D L A + + + T + Sbjct: 129 AFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLEAAKLEILSQARMGDGALGGALALVTSR 188 Query: 189 GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI--------DTVKQQWRDAV 240 + ++ L E ++ + A + R+ D++ D Sbjct: 189 VHETAFPELMGELTAERGRLERLFERHGGVEGALAALRTRLGLEAGDTPDSLLAWATDEA 248 Query: 241 GELDALIESS------GIDRRKFNRSNQAKWIDKISA--------WAEEETNSYQLPESL 286 + + G D + A+W+ + A+ T + ++L Sbjct: 249 HFQGEGLREAVAALLTGSDSDRKRGEAMARWLADPAGRENGFAGWCAQFLTAEGGIRKTL 308 Query: 287 EKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRR 346 + R + L+ ++L A ++ + + + R K R Sbjct: 309 ATKAVREGFPGVEDCLLAEAERLYRLTERLRAARIAEATGALLTLGGALLASYRRAKTHR 368 Query: 347 GELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-- 403 + +DD++ L + + +IDE QDT+P Q+ + ++ Sbjct: 369 ALMDYDDLILGARDLLARPGVAPWVLYKLDGGIDHVLIDEAQDTNPDQWAVVEKLTEEFF 428 Query: 404 ------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----------AHYTLDTNW 447 + + +GD KQ+IY+F+ AD + + R L+ ++ Sbjct: 429 AGRGARETLRTVFAVGDAKQSIYSFQRADPREFERMREAFATHVPAAGGKWEVVDLNLSF 488 Query: 448 RSAPGMVNSVNKLFSQTDDA----FMFREIPFIPVKSA-GKNQALRFVFKGETQPAMKMW 502 RSAP ++ +VN +F+ +I +P + + V + + W Sbjct: 489 RSAPAVLEAVNAVFAPGRPGRDGVAGDEDITHLPHRGGQAGRVEVWPVVEPRPADELPAW 548 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 E ++ +A++ AA+IR + RPVRA D+ VLVR R Sbjct: 549 KPPVERIRGDSPRTRLARLMAARIRAMIDGEV-------LESKGRPVRAGDVLVLVRRRG 601 Query: 563 EA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 + L ++ V ++R + E + +++ L ++ PE + TL + L ++ Sbjct: 602 GFVEDLVRELKSRKV-EVAGADRMVLTEQMAVMDLMALGNFLLLPEDDLTLATVLKGPLV 660 Query: 622 GLNALDIETLNN----DEHAWDVVVE--------------EFDGYRQIWRKRGVMPMLRA 663 GL + TL + D W+ + + + + Sbjct: 661 GLGEDQLFTLAHHRGKDVGLWEALRQGVADEGGVFEAAFRRLSELLAQADRVSPHTLYAR 720 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 ++ LLA G E + +S L S + WL LE + Sbjct: 721 VLGPLGGRRRLLARLGLEAEDSIDEFMSLTLAFERAHPPSLQGFLHWLEAGALEIKRDLE 780 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAA 783 + + V+I+T+H SKGL+ P+V+LP + + Sbjct: 781 Q------AGRDAVRIMTVHGSKGLQAPIVFLPDTMQVPTRSPRLLWLGEGEGELPAWPPR 834 Query: 784 PES--------VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 E D + R E RLLYVA+TR+ + ++ + H Sbjct: 835 AEDMDSVCRQGADARKQSREREYRRLLYVAMTRAEDRLVVCGWRGLKAAPETCW----HA 890 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 L D L E + AQT + + + Sbjct: 891 LVQCALAPTAAAFDDPFLAKAAETAEGPVLVLANAQTAPPEKEKGAGPGAGQ-------S 943 Query: 896 LPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFL 955 P +W + S P G V P PR G + Sbjct: 944 SPLPDWALLS-------AEPEPIPPRPLAPSRPEGEEPTVRSPLAEMDGKPR-WQRGKLI 995 Query: 956 HSLFEDLDFTQPVDP-NWVREKLEL--GGFESQWEPVLTEWITAVLQAPLNETGVSLSQL 1012 H L + + P D + L G E+ + + ++ +L P L+ L Sbjct: 996 HRLLQTVPDLPPPDRSRAMLRFLARPAWGLETPEQLAIANEVSDILDHP------GLAGL 1049 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 A + E+ L ++ G +D + Sbjct: 1050 FAPGSRAEVP------------------------------LVGRIGDRVVSGRVDRLAVS 1079 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 + + DYK+N + + Y Q Y LAL Sbjct: 1080 DTEVVIADYKTNRRPPATPDEVPE---------LYVRQMAAYRLALACI 1119 >UniRef50_Q1GCN8 ATP-dependent nuclease subunit A n=11 Tax=Rhodobacterales RepID=Q1GCN8_SILST Length = 1121 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 201/1166 (17%), Positives = 389/1166 (33%), Gaps = 159/1166 (13%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + A+AG+GKT + RLLL R + + +L +T+T+AA +E++ Sbjct: 16 PDASTWLAANAGSGKTKVLTDRVARLLL---------RGVEPQHILCLTYTKAAASEMQN 66 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLEEI--DDKAQAAQWLLLAERQMDEAAVFTIHGF 132 R+ + E + + + + D AQA A + TIH F Sbjct: 67 RLFQRLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTIHSF 126 Query: 133 CQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 C +L E+G+ + +ED + +A A + Sbjct: 127 CSSLLRRFPLEAGVSPQFTEMEDRAAAMLRAEIAEDMAQGPDAHVVEAASFHIGGLDFET 186 Query: 193 LLRDI-NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSG 251 L +I R + + + L + + + + + + + +++S G Sbjct: 187 LTAEICRRQAGFDPALDHNRLGEVFDLPAGYDRSALQAEVFLGNEEEILSRTIEMLKSGG 246 Query: 252 IDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGE------TP 305 K E + + FS + TK E Sbjct: 247 ATDTKNADKLARITAVTPDVLPLLEDVFLTGKSAKDPFSAKIGSFPTKKLRESNGVLMDQ 306 Query: 306 RHPLFEAIDQLLAEPLSI----RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSA 361 P ++ + L++ + +V+ R K+ RG L FDD++ + + Sbjct: 307 LEPFMARVEAARPKRLALDAMEKSIVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNL 366 Query: 362 LRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---------QPETALLL 411 L + + + ++DE QDT P Q+ + ++ E + + Sbjct: 367 LNDPAVAAWVLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFV 426 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVHAHY----------TLDTNWRSAPGMVNSVNKLF 461 +GD KQ+IY+F+GAD + + ++E +L ++RS+ ++ V+ +F Sbjct: 427 VGDKKQSIYSFQGADPDAFDRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDVVF 486 Query: 462 SQTDDAFMFREIPFIPVKSA-GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQ 520 A + KS L + + + W + + +A+ Sbjct: 487 DGEHRAGFADDAKHQAFKSDLPGRVDLWPLVEKTDDEEERDWTDPVDRPSPRHHSVILAE 546 Query: 521 VCAAQIRDWLQAGQRGEALLMNGD--DARPVRASDISVLVRSRQEA-AQVRDALTLLEIP 577 A I++ + G RPV A D +LV+ R + +++ A +P Sbjct: 547 RIANHIKEMIAQGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEIIRACKAAGLP 606 Query: 578 SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE-- 635 + ++R V L +++ LL+ + PE +L AL + + G + + L + Sbjct: 607 -IAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRSE 665 Query: 636 -HAWDVVVEE----------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 H W + + R+ ++ +++ +L G E Sbjct: 666 MHLWPALRARSEEFPQTMEILNDLRRQADFLRPYDLIERILTRHLGRAKILGRLGTEAED 725 Query: 685 TDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKS 744 +S+ L T++ S + W+ ++ + ++ + +++++++H S Sbjct: 726 GINALLSQALAYERTEVPSLTGFLVWMQ-------TDDLEIKRQMGAASSMIRVMSVHGS 778 Query: 745 KGLEYPLVWLPFITNFRVQEQAFYHD-RHSFEAVLDLNAAPESVDLAE----AERLAEDL 799 KGLE P+V LP T R A + + + + P ++D A ++ E L Sbjct: 779 KGLEAPIVILPDTTKRRPSPAAEVMEVDGTPLWRMSSDQMPPAMDAARVFAQEKQANERL 838 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ----SALGRLLQKGEPQDAAGLRT 855 RLLYVALTR+ + A + + GD AL GE A Sbjct: 839 RLLYVALTRAEKWLIVAGAGDLDKGGDSWYQRVEAAMKTMGALPYDAPGGEGLRWA---- 894 Query: 856 CIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHG 915 W+ + + ++++ E+ + Sbjct: 895 --------HGDWEAPVFVPSDLTEEDEITLPEV-----------------FRRAAPAYVA 929 Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVRE 975 A L P D+ A P + + GT LH L E L D + E Sbjct: 930 PAATLRPSEDLGGAKAL-----PGDSGLSEEDAKARGTALHLLLEHLPKLPEEDWDNRAE 984 Query: 976 KLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 + W+ +L E VL + + + A E+ Sbjct: 985 AIAQH---EDWKALLAEA-RQVLCSD------DCADIFAPGTLAEVP------------- 1021 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 + L G ID + R +D+KSN + S+ Sbjct: 1022 -----------------VSADLGTVRLHGIIDRLVITPDRVLAVDFKSNAVVPQSAEACP 1064 Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRY 1121 + + M A Y +AL + Sbjct: 1065 EGLLRQMGA---------YDVALRQI 1081 >UniRef50_Q0G5V0 Helicase, UvrD/Rep family protein n=2 Tax=Aurantimonadaceae RepID=Q0G5V0_9RHIZ Length = 1211 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 205/1222 (16%), Positives = 394/1222 (32%), Gaps = 173/1222 (14%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 S + + A+AG GKT + +RLLL ++L Sbjct: 7 SAYTAEQQRIAADPNLSVFVSANAGAGKTHVLTERVIRLLL---------AGFDPSKILC 57 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDN-PLYERLLEEIDDKAQAAQWLLLAERQ 120 +TFT+AA AE+ R+ + + + + D E + + QA Q A Sbjct: 58 LTFTKAAAAEMSNRVFARLGAWAVMDGEKLADEIAKLEGHTPKPERIDQARQLFARALET 117 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRY------------------Q 162 + TIH FC+ +L+ E+ + ++++D + Sbjct: 118 PGGLKIQTIHAFCEAILHQFPLEANVAGHFEVLDDGESRLMLGEVRRRLVTGAAALAAGR 177 Query: 163 ACADFWRRHCYPLPREIAQVVFETWKG-PQALLRDINRYLQGEAPVIKAPPPDDETLASR 221 AD R + F+ DI R+++G + A + L Sbjct: 178 EAADELREAFAEALAIGGEFGFDGLLTEIVQKRDDIRRHIEGCGGLEGAIAFLADALGID 237 Query: 222 HAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 A I +V ++ K A+ + ++A A+ Sbjct: 238 PNTDEAAIISVLGPIPGLDPSTCEIVRHLAERSDKKTDQRLAESLPDLAAAADPLERLAL 297 Query: 282 LPESLEKFSQRFLEDRTKAGGE----TPRHPLFEAIDQLLAEPLSIRDLVITRA------ 331 L + + + + EA + + + L + RA Sbjct: 298 LKQIVMTQAGGRRASVATKVVTGELPDLDERVAEAQEYVETAEDRLAALKLFRASRAALV 357 Query: 332 -LAEIRETVAREKRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDT 389 + A KRRRG L F D+++R L RSE+ + + +IDE QDT Sbjct: 358 IADALERDYALLKRRRGRLDFTDLIARTADLLTRSEAASWVHYKLDQGIDHILIDEAQDT 417 Query: 390 DPQQYRIFRRIWHH--------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH- 440 P+Q+++ R++ + +GD KQ+IY+F+GA + R V A Sbjct: 418 SPRQWQVMRQLVDEFFVGRSTHNRTRTVFAVGDEKQSIYSFQGASPHMFDLERRVVKAKA 477 Query: 441 ---------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ-----A 486 +L+ ++R+ ++ +V+++F ++ P ++ + Sbjct: 478 DEAGLKFTPVSLNQSFRTLETVLGAVDQVFEAPENRRGLSTGGERPTHTSARQDGEGLVE 537 Query: 487 LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 + + E+ WL + +AQ A QI +WL ++ Sbjct: 538 IWPTIRAESTVEPDNWLDPMDEEPKSSPAYRLAQRIADQIAEWLGD------PIVEKGRI 591 Query: 547 RPVRASDISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMT 605 RP+ D+ +LVR R + AL I SV ++R ++ E + Q+++ L + Sbjct: 592 RPLDPGDVMILVRKRTNFIPAMAAALRERGI-SVAGADRLTITEHIAVQDLIALGRVAAN 650 Query: 606 PERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGY----------------- 648 E + +L + L + + ++ L + + Sbjct: 651 FEDDLSLAALLKSPLFEFTDDELMALALSRGPLEHLSAGLRKLGGEEGPGRVPDWFPDGE 710 Query: 649 ---RQIWRKRGVMPMLRALMSARN------IAENLLATAGGERRLTD---------ILHI 690 R + + + L L + +L GG +L I Sbjct: 711 PAARLLEKAHHAIERLDELRNRTGFESVFTFYARILGPEGGRSKLMARLGRDTADVIDAF 770 Query: 691 SELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP 750 +L T L +LS ++ + +E + V+I+T H SKGLE P Sbjct: 771 LDLALSEDT--AGVSGLDAFLSDL----EAAPPEIKREMEGGRGEVRIMTTHASKGLEAP 824 Query: 751 LVWLPFITN-----------FRVQEQAFYHDRHSFEAVLDLNAAPES------VDLAEAE 793 +V+L + R +E + + E+ ++ + Sbjct: 825 VVFLVDPGSAPFHGSHGSRLMRWEEMPRLLADQAPGFLWRAAKEVENSAIAALREIEKQR 884 Query: 794 RLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGL 853 E RLLYV +TR+ + R ++ V + E D AG Sbjct: 885 AEEEYRRLLYVGMTRAAERLVICGMAGTRGPSEEAWREKVESALKPH---AEEITDMAGD 941 Query: 854 RTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRG 913 C I + + + +++ L+ L+ +T S Sbjct: 942 PVCWR------IGSRRMGKPETERPDAANLAVRALDLSRLEEEVAPPRPLTPSSA---GA 992 Query: 914 HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR-GASPGTFLHSLFEDLDFTQPVDPNW 972 A +L + + + P L P G G +H L + L + Sbjct: 993 AFEADELESSVLEEQNTAETAYASPVLGTAATPSLGIQRGLVVHRLLQHLPTLASEERER 1052 Query: 973 VREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLI 1032 E + + A +Q +++ + + + A + E+ I+ + Sbjct: 1053 AAEAYVRRALPQVG-DTHRKQLLASVQRLMDDP--AYAAIFAEGSRAEV----AIAGTVR 1105 Query: 1033 ASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 1092 + + + G ID + + ++DYK+N + A Sbjct: 1106 IGRTNYA----------------------VNGTIDRLVVTDRDVLIVDYKTNRPPPQTLA 1143 Query: 1093 YTQQAMAAAMQAHRYDLQYQLY 1114 + + +R L QLY Sbjct: 1144 EVPKDYVRQLAIYR-ALVMQLY 1164 >UniRef50_A6WX35 Double-strand break repair helicase AddA n=11 Tax=Brucellaceae RepID=A6WX35_OCHA4 Length = 1180 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 201/1182 (17%), Positives = 388/1182 (32%), Gaps = 162/1182 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AG+GKT + +RLLL ++L +T+T+AA A ++ R+ Sbjct: 24 SVWVSANAGSGKTHVLTERVIRLLLE---------GTDPSKILCLTYTKAAAAVMQNRVF 74 Query: 78 SNIHELRIACLRETTDNP-LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + E + E + E A A + A + TIH FC+ + Sbjct: 75 MRLSEWAVLPDEELAERLKSLEGRRPNDARLAAARRLFARALETPGGLKIQTIHAFCEAI 134 Query: 137 LNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETWK------ 188 L+ E+ + ++++D ++ L +A ++A + + Sbjct: 135 LHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDIDLAAAFADVLQASGEMG 194 Query: 189 -------------GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQ 235 G Q + ++ + +A D +T + I Sbjct: 195 LQSLLDEAVSRRNGLQTYIAELGVAAHRSEALHRAFRFDPQTSEDDLIADLWPIPEFSDD 254 Query: 236 WRDAVGELDA-LIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPES---LEKFSQ 291 + + + + + D+ + + P+S + + Sbjct: 255 ALELIMSIQKGASRAQDFALQLRRFEKVTSQRDREAVLRAAFLKTTGEPKSGSYVGSAAV 314 Query: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 + L + + + + +D+L L +L + + + KR+RG L F Sbjct: 315 KKLLPDFEEDFDAAAARVEQGLDRLKELRLVRLNLAALTLIDNLLQRYHDLKRQRGLLDF 374 Query: 352 DDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH------- 403 +D+++R + L R+ +G+ + + ++DE QDT P Q+++ R + Sbjct: 375 EDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGVGQ 434 Query: 404 -QPETALLLIGDPKQAIYAFRGADIFTY--------MKARSE--VHAHYTLDTNWRSAPG 452 L +GD KQ+IY+F+GA + ++A +L+ ++RSAP Sbjct: 435 RNISRTLFAVGDEKQSIYSFQGAVPEDFAAQGRSVSLRAEDAELKFERVSLNFSFRSAPD 494 Query: 453 MVNSVNKLFSQTDDAFMFREIPFIPV--KSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 ++ +V+++F++ + A + + E W + Sbjct: 495 VLQAVDEVFARPEANRGLAGATVHEAIRSDAPGEVEIWDMLTPEVVEEPDDWREPVDHLA 554 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA-AQVRD 569 + +A AA IR WL G+ R + DI VLVR R + + Sbjct: 555 APAVR--LADQIAATIRHWLDRGEPIP------GQNRRIMPRDIMVLVRKRDQFMPALSR 606 Query: 570 ALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE 629 AL L +P V ++R + + Q+++ L + V+ P + +L S L + + G + + Sbjct: 607 ALKNLSVP-VAGADRLRLTSHIAIQDLMALGRFVLQPSDDLSLASVLKSPLFGWDDDRLF 665 Query: 630 TLNNDEHAWDVVVEE-----------------FDGYRQIWRKRGVMPMLRALMSARNIAE 672 L + + + E +R + V ++SA Sbjct: 666 ELAHPRGSGLTLFERLYQVSRGDAALAEVHKTLSRWRNMADTMPVFEFYARILSADGARR 725 Query: 673 NLLATAGGERRLTDILHISELLQEAGTQ-LESEHALVRWLSQHILEPDSNASSQQMRLES 731 LLA G E +++ E L +E A + L ++ ++ + + L+ Sbjct: 726 KLLARLGPEA--------GDIIDEFQNYALSAERAGLPGLQAYLETLEAASPEIKRELDQ 777 Query: 732 DKHLVQIVTIHKSKGLEYPLVWLPF----ITNFRVQEQAFYHDRHSFEA----------- 776 ++ V+I+T+H +KGLE +V+L + + D + Sbjct: 778 GRNEVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPFDFSNDSPSVKGYLWQPNA 837 Query: 777 VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836 ++ + E RLLYV +TR+ + R G+ Sbjct: 838 GYQTGFTTAQIEKLKTRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDAL 897 Query: 837 ALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL 896 A A R DIA Q P ++ L R Sbjct: 898 ATKAETFVHPVLKVAARRYRNTPRGMVDIAEQDRTEDHALPSFPDEYREPIKPEIGLPRP 957 Query: 897 PGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLH 956 + S L + D S V P F GT +H Sbjct: 958 LAPSGA----SALIEADEEPPLDSF-----------SPVLGPGNGTPAF--ALRRGTAIH 1000 Query: 957 SLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARN 1016 L + L + LG + W + ++ L++ + + + A Sbjct: 1001 MLLQYLPDVPQDGRETLARDY-LGRIAADWPETERQIAWQSVRTILDDP--TYAPVFAEG 1057 Query: 1017 KQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRY 1076 + E+ A +E + G ID + E R Sbjct: 1058 SRGEV--------------------------AIMGTIELGGRDHAVSGQIDRISVGEDRV 1091 Query: 1077 YLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 ++DYK+N + A Y Q LY L Sbjct: 1092 LIIDYKTNRPPPKTIEAVPFA---------YRAQLALYRELL 1124 >UniRef50_C4FTG5 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTG5_9FIRM Length = 1311 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 219/1308 (16%), Positives = 425/1308 (32%), Gaps = 220/1308 (16%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ ASAG+GKT + L LL +++LLV TFTEAA +E++ R+ Sbjct: 29 NILVSASAGSGKTTVLIERILNHLLTHYA--------NMDQLLVSTFTEAAASEMKARME 80 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + + + D+A+ A L+ + + + + T+H FC +++ Sbjct: 81 NRLKQAVN-----------------QTADRAEQAH-LVSQLQLLPASHIRTLHSFCLQVI 122 Query: 138 NLNAFESGMLFEQQLIEDE---SLLRYQACADFWRRHCYPLPRE--IAQVVFETWKGPQA 192 + +L+ DE SLL + + + + ++ + GP Sbjct: 123 QQYFYIIDFDPSFRLLTDETQKSLLYQEVWQELMIDLAQDPDWQEKLFHLLAQFSPGPSD 182 Query: 193 --LLRDINRYLQG-----EAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245 L + I Q E V + D A+ + +W+ ++ Sbjct: 183 QGLYQLILDLYQFASSHPEPQVWLSQLADQALHFEDFAKTGLYQAVLLPEWQASLSHAQH 242 Query: 246 LIESSGIDRRKFNRSNQAKWIDKISA------WAEEETNSYQLPESLEKFSQRFLEDRTK 299 L+E + + +K + A + + L + F + + Sbjct: 243 LLEQALAGLESLTDAMISKLQPLLEAERSQVQALQTVLTNQDLAQVFAHFQKIAFDRWPS 302 Query: 300 AGGETPRHPLFEAIDQLLAEPLSIRDLV------------------------ITRALAEI 335 L E + L + + V + E Sbjct: 303 GKKAEEDKELLEQVKALRDQAKEQIERVRQLMVLDYDTTVYVEGQAGASIQDLAHLTLEF 362 Query: 336 RETVAREKRRRGELGFDDMLSRLDSALR-------SESGEVLAAAIRTRFPVAMIDEFQD 388 R+ + + K + + ++D+ L A + F ++DE+QD Sbjct: 363 RQALWQAKVAQNCIDYNDLEHLTLDILAPYDADLGQRQPSEAALYYQDLFREVLVDEYQD 422 Query: 389 TDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----- 440 + Q I + + + L ++GD KQ+IY FR A+ ++ Sbjct: 423 INDIQATILSFLSRERRQDLSGNLFMVGDVKQSIYGFRMAEPSLFLAKYQAYQEGKGGHL 482 Query: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK 500 LD N+RS ++ N +F + D F E+ + ++S + + ++ Sbjct: 483 IVLDANYRSRDEILQFTNFVFQRLMDP-GFGEMQYGAMESLKTGNHSFLPAPPDPKFDIE 541 Query: 501 MWLMEGESCGVGDYQ--------------STMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 L E + G+ + A + I+ +QAG + Sbjct: 542 FLLYESSAADEGEPEDQELDLEQGVETSLEAEAWLIGRDIQARVQAG--WQIYDKELGQQ 599 Query: 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTP 606 RPV D +L +R V+ L IP + N ++ F+ E + ML LL+ + P Sbjct: 600 RPVTYQDFVILSSTRHPFQPVKQVFEQLGIP-LLSQNVENYFQRQEIRLMLALLKLIDNP 658 Query: 607 ERENTLRSALATSMMGLNALDIETLN----NDEHAWDV---------------------V 641 ++ L + L + +GL+ + + + ++ Sbjct: 659 HQDIPLVAILRSHFVGLSDEQLSQIRIRVPSSGSFYEACQQVLLIEEASLVALQETLGNF 718 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL-LQEAGTQ 700 + + +RQ+ ++ ++ ++ L + + G++R ++ E ++ Sbjct: 719 MGKLKEWRQLAQRVDLVTLIWTLYQETYFLDYVAGLDQGDQRQANLHAFYERVVEFEAGN 778 Query: 701 LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760 + A V ++ Q + ++ + L D++ V+++T+H SKGLE+P V+L Sbjct: 779 YKGLTAFVGFIEQIMAH--DQDLAEPLLLSEDQNFVRVMTVHASKGLEFPFVYLMQTGKR 836 Query: 761 RV--QEQAFYHDRHSFEAVLDLNAAPES-------VDLAEAERL----AEDLRLLYVALT 807 Q Y + LD + + ER +E++R LYVALT Sbjct: 837 FNIQDTQKVYVPSKRYGLGLDYLDIKHQLQYPSFIKEAIKLERRGQLKSEEMRKLYVALT 896 Query: 808 RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC-IEALCDDDIA 866 R + + + + K + V S ++ + Q A + A Sbjct: 897 RCEQKLVIVGSVKSQDQVQTKQEQVVAASGQELVMNRALRQGAGSWLDWLLMATAFSGRH 956 Query: 867 WQTAQTGDNQPWQVNDVSTAELNA--KTLQRLP----GDNW------------------- 901 Q+ N+ ++ V+ AEL K P NW Sbjct: 957 PQSTTDFTNEQVRLTYVAEAELLPLLKASTSRPWLQDDQNWLADLKLTVDQHEVTSEVGA 1016 Query: 902 -------------------RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVV---EEPT 939 S S L++ + + G S +E Sbjct: 1017 FIQSLLESQYDYGLASKTSSYQSVSELKRLYEEPHNEKLSHFTDRRPGQISWDWLTQEDE 1076 Query: 940 LTPHQFPRGASPG----TFLHSLFEDLDFTQPVD----------PNWVREKLELGGFESQ 985 + G G F F+ F + ++V ++L+ E Sbjct: 1077 ERAEESETGQKAGIQSIRFTGDTFQAPRFVRERQAYTAAQIGTFTHYVMQQLDFSALEGL 1136 Query: 986 WEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ--- 1042 I QA L + SQ A +F ++ Q +L + Sbjct: 1137 DVSDYPAAIQEQAQAWLAAGFMEASQWEAVKLASICQFLASDLGQVLIKQAKSLHCEQAF 1196 Query: 1043 ---------FDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSA 1092 F E + ++ G +D +GR L+DYK++ + Sbjct: 1197 SYRLPAAKLFARQLGADQLQELADSQLLVHGVVDNYLNLPDGRLILIDYKTDRYRP-WAN 1255 Query: 1093 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHFGGVI 1139 T+ A + +Y Q LY AL + D Y F V+ Sbjct: 1256 LTKSAQIDQIVD-KYRFQMSLYARALSLAKGKAVTDVYLVLLDFDQVV 1302 >UniRef50_A3CVM7 UvrD/REP helicase n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVM7_METMJ Length = 1080 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 207/1189 (17%), Positives = 368/1189 (30%), Gaps = 195/1189 (16%) Query: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61 + E L + + A AGTGKT + YL LL + V +L Sbjct: 1 MGLTERQARAALDHSTSKCVTAGAGTGKTHVLVQKYLSLL---------ESGVGVGNILA 51 Query: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQM 121 +TFTE A E++ R+R I E + + + Sbjct: 52 LTFTEKAAGEMKIRVRRAIAE-KEGERWDAIRDEFLW----------------------- 87 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREI 179 A V T H FC +L + +G+ ++++ LR +A D R+ Sbjct: 88 --AKVSTFHSFCASVLREFSIGAGVGPSFAVLDEGEAFRLREEAIDDLIHGDPPTACRDA 145 Query: 180 AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID-----TVKQ 234 + L + E+ ++ ++ Sbjct: 146 VIGALRAVGAYE-LKNYLEALYSRRGAAEAFFAALAESEEEVLDAWRTALERCQTEALEA 204 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 A ++ L + + + + + + E F + Sbjct: 205 FLSRAAPSIETLRDLAARYPGERDPAGAYLRAVEPCLAGEIAVAELAAVHDNSGFRKNMG 264 Query: 295 EDRTKAGGETP-RHPLFEAIDQLLAEPLSIRDLVITRA-----------------LAEIR 336 + + G + + + Q L + L + A Sbjct: 265 QKKNWEGDDLDNLRAAYGVLRQCLTDHAGACSLTLDAADPFTRATLDFLRDLGVVFKAFL 324 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 ++V EKRR L FDD+++R R G+++ R+RF ++DEFQDTDP Q I Sbjct: 325 DSVEAEKRRMNALDFDDLVNRTHRLFRDR-GDIVETHFRSRFRFILVDEFQDTDPVQIAI 383 Query: 397 FRRIWHHQPETALLLIGDPKQAIYAFRGADIFTY-----MKARSEVHAHYTLDTNWRSAP 451 R + L ++GDPKQ+IY FR AD+ + + R LD N+RS P Sbjct: 384 IRTLLGDSA--NLFVVGDPKQSIYLFREADVTQFSHTRDLIERDLGGETVALDVNFRSTP 441 Query: 452 GMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCG 510 +V N +FS E + P+ + ++ A L+ + Sbjct: 442 EVVGFTNAVFSALMAEAGRPWEFLYEPLHAFRRDDAGSVE-----------LLLCQKIRD 490 Query: 511 VGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDA 570 + A++ A +IR ++ G++ + + RP D++VL+ R A A Sbjct: 491 RAAGRRAEAEMAARKIRSLVERGEK---RVSRDGEVRPAGYGDVAVLLERRTNLAYYEWA 547 Query: 571 LTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIET 630 L +P ++ +E E ++ +L+ + + L L + G + + Sbjct: 548 LARYGVPY-HVHAGLGFYERQEVYDLYNILRFLANNLDDAALYGVLRSPYFGFSDARLFH 606 Query: 631 LNN--DEHAWDVVVEE-------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 + W+ + + + R+ +LR ++ I AGGE Sbjct: 607 IARAPGASLWERLQAAAEPAAATLREWLSLSRRLPPARLLRRIVDESGIFVVFGGMAGGE 666 Query: 682 RRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 + ++ + L ++A + V L + I D + V I+T+ Sbjct: 667 QAAANVEKLIALARDAD--CSTLAGFVAELGRSIDAGDREGDAPLDLAS--ADSVSIMTV 722 Query: 742 HKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAE---------- 791 H +KGLE+P+V +P + + + + E Sbjct: 723 HAAKGLEFPVVVVPDLAETPRSGGGTIMVEDGLLLGVSIPNPANDHEREETPVLRLLKDE 782 Query: 792 --AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQD 849 + AE RL YVA+TR+ H L + + D + L L + Sbjct: 783 YRQKEEAERKRLFYVAVTRAEDHLILC-GEMPVAVPESLRDARTRMAWLAHCLGLCDEVY 841 Query: 850 AAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN---WRVTSY 906 A G + + V ++ A + N RV S Sbjct: 842 ARGEAVLGTLRIPITLDPAAIPVDVQETVPVCLPVPDDVPAAPVPAGIPSNGKKERVYSA 901 Query: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 S L+ G A+ +P + G +H +F D Sbjct: 902 SELEAYLRGPAESRLPVFAAGEDALT------------------RGLVVHEVFRGRDPA- 942 Query: 967 PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 L G + E L +PL V E+ F Sbjct: 943 --------AVLRRYGLDPAGAVEYQELYVRFLASPLMRGIVR--------DHREVPFSAR 986 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVF-RHEGRYYLLDYKSNW 1085 ++ +G ID + R G + L+DYK+ Sbjct: 987 VNGFA------------------------------FRGVIDRLVQRVNGTWMLIDYKTGT 1016 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHH 1134 G+ Y +Q +Y A + L + Y Y Sbjct: 1017 PGDAGE---------------YAIQMAVYHRAAAQILSAPVTPYLYFVD 1050 >UniRef50_Q1JCJ8 ATP-dependent helicase/nuclease subunit A n=14 Tax=Streptococcus RepID=ADDA_STRPB Length = 1222 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 183/1251 (14%), Positives = 404/1251 (32%), Gaps = 220/1251 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKTF + L +L R ++++ L + TFT A ELR RI Sbjct: 54 QNILVSASAGSGKTFVMVERILDKIL---------RGVSIDRLFISTFTVKAATELRERI 104 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + ++ + +TTD + L E+ + + +A + T+ F Q++ Sbjct: 105 ENKLYS----QIAQTTDFQMKVYLTEQ--------------LQSLGQADIGTMDAFAQKV 146 Query: 137 LNLNAFESGMLFEQQLIED---ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 ++ + G+ + ++++D + +L+ + + + + + + + + G Sbjct: 147 VSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVFRALVKNFSGNCKD 206 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGID 253 + ++ L ++ + L ++ + Sbjct: 207 TSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDIELLLLAMQDTANQ 266 Query: 254 RRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH------ 307 R + K + + + T + E L + + F KAG + Sbjct: 267 LRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKAGLDRLIRDVTGLI 326 Query: 308 -------------PLFEAIDQLLAEPLSIRDLV------------ITRALAEIRETVARE 342 P+F+ + Q L + + ++ + + E Sbjct: 327 PSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQDFVLAFSEAYLAV 386 Query: 343 KRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH 402 K + F D+ L E + + + + M+DE+QD + Q R+ + + Sbjct: 387 KIQESAFEFSDITHFAIKIL--EENTDIRQSYQQHYHEVMVDEYQDNNHMQERLLTLLSN 444 Query: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA------HYTLDTNWRSAPGMVNS 456 ++GD KQ+IY FR AD + + + L N+RS ++N Sbjct: 445 ---GHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKTEQGKVILLKENFRSQSEVLNV 501 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 N +FS D + ++ + + V + + + ++ + + Sbjct: 502 SNAVFSHLMDESVG-DVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDGNAPSDSE 560 Query: 517 ----TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 + + A +I + V DI++LV SR + Sbjct: 561 GISFSEVTIVAKEIIKLHND--------------KGVPFEDITLLVSSRTRNDIISHTFN 606 Query: 573 LLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 632 IP V + + +++E ML L+ + P + L + L + M + D+ + Sbjct: 607 QYGIPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIA 666 Query: 633 NDEH--------------------------------AWDVVVEEFDGYRQIWRKRGVMPM 660 + ++ ++ +R+ + + + Sbjct: 667 LQKDNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDL 726 Query: 661 LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ-LESEHALVRWLSQHILEPD 719 + + + R + + + A E+ ++ ++ + + + ++ + + + + Sbjct: 727 IWKIFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQN 786 Query: 720 SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA---FYHDRHSFEA 776 A + + + K V ++TIHKSKGL++P V++ F +R Sbjct: 787 DLAD---VEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIG 843 Query: 777 VLDLN---------------------AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL 815 + L + L+E +RLLYVA+TR+ Sbjct: 844 IKYLADIKVLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYF 903 Query: 816 GVAPLVRRRGDKKGDTDVHQSAL-----------GRLLQKGEPQDAAGLRTCIEALCDDD 864 + D + + LL + L + + D D Sbjct: 904 IGKASKSKSQDITDPKKLGKLLPLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSD 963 Query: 865 IAWQTAQTGDNQPWQVNDV----STAELNAKTLQRLPGDNWRVTSY------------SG 908 + ++ D +E A+ L L + +Y S Sbjct: 964 LTQESVGRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQ 1023 Query: 909 LQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPV 968 L+ + + + + ++ S P + + G+ LH L + L ++P+ Sbjct: 1024 LKAAYEPLLEPIGVDIIEKSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPI 1083 Query: 969 DPNWVREKLELGGFESQWEPVLT-EWITAVL-QAPLNETGVSLSQLSARNKQVEMEFYLP 1026 + + + L + + L + I + L + + ++ E F + Sbjct: 1084 NQQTLLDALREIDSNEEVKTALDLKKIESFFCDTSLGQFFQTY----QKHLYREAPFAIL 1139 Query: 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWL 1086 +P+ Q +L+G ID F + L+DYK++ Sbjct: 1140 KVDPI------------------------SQEEYVLRGIIDAYFLFDDHIVLVDYKTD-- 1173 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 + RY Q +LY AL + + + Y GG Sbjct: 1174 ---------KYKQPIELKKRYQQQLELYAEALTQTYKLPVT-KRYLVLMGG 1214 >UniRef50_C7JGX2 DNA helicase II UvrD/Rep n=11 Tax=Acetobacteraceae RepID=C7JGX2_ACEP3 Length = 1190 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 202/1189 (16%), Positives = 367/1189 (30%), Gaps = 142/1189 (11%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRP-LTVEELLVVTFT 65 L + ASAG+GKT + LRL+L P + +L +TFT Sbjct: 18 AQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSILPGSSPARILCLTFT 77 Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA 125 +AA AE+ R++ + E + + + +A Sbjct: 78 KAAAAEMSIRLQKRLGRWVTLSDEELDKELAGLYVPCTEETRRRARALFAEVLDLPGGMR 137 Query: 126 VFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL-LRYQACADFWRRHCYPLPREIAQVVF 184 + TIH FCQ +L E+ M ++E+ L QAC + I+ + Sbjct: 138 IGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQACVEAI--LGQQKEGVISSLAG 195 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVA----------------- 227 + G + + R + + ++K D + + QI+ Sbjct: 196 QISLGDFIFISGVLRKDERSSSLLKLVVEDFDKAEAVLCQILGLSPDILHGSTSEFLEKS 255 Query: 228 -----RIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQL 282 +++ ++ E I+ + + ++ + S W Sbjct: 256 CTNFPEEQNLREGFQILSEEGSEAIKRNAFSLLDWLALPASERAAQWSVWRNGFLTKEGK 315 Query: 283 PESLEKFSQRFLEDR--TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA 340 S+ S++ E + + + + L A L+ + + A + Sbjct: 316 LRSVGLISKKLSEKYSDISLYIQKESERISKVEEHLRARKLAEMGSALLKMAAAVSSLYT 375 Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 +K R G++ +DD++ R LR + + ++DE QDT P+Q+RI + Sbjct: 376 TQKARHGQIEYDDLIQRALGLLREPGAAWVMYKLDGGIDHLLLDEVQDTSPEQWRIAGDL 435 Query: 401 WHH-----------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-------- 441 +P + +GD KQ+IY F+GAD ++ + R + Sbjct: 436 TEEFFAGLGGRSEDEPPRTIFAVGDYKQSIYGFQGADPDSFREWRQKFKKRVQDAHLLWR 495 Query: 442 --TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK-------SAGKNQALRFVFK 492 L ++RS ++ V+ +F+ + A E P ++ G+ + V Sbjct: 496 EPELTVSFRSTAPVLKLVDAVFADPEAAKGVVEEPGQIMEHITARPGEGGRVELWPLVEA 555 Query: 493 GETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRAS 552 + + + W + + +A A I L +P+ Sbjct: 556 EKEEDIISPWEPAQGNATRQSPRQKLADAVAGYIFRQLNQ--------KPLSGQKPLTPG 607 Query: 553 DISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENT 611 D+ VLV R + AL IP V L R + E L Q+ML L A++ P+ + T Sbjct: 608 DVLVLVPRRSPFVGMLVRALKGHNIPVVTLV-RTGLAEHLAVQDMLSLCAALLLPQDDLT 666 Query: 612 LRSALATSMMGLNALDIETLN----NDEHAWDVVVEE-------------FDGYRQIWRK 654 L L + + G++ + L E W + E +G + Sbjct: 667 LACVLTSPLGGVSDNSLMALAAGREKGEPLWSALRERHAEQSDWKQAWNFLNGLFRQVDY 726 Query: 655 RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQH 714 L A + LA G E +S ++ S + W+ Sbjct: 727 LTPYEFLSAALGPGGARARFLARLGPEAAEPIDELLSAAIRYQDQHPPSLQGFLHWMRH- 785 Query: 715 ILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS- 773 + + + E+ V+I+T H SKGL+ LV LP E+ + Sbjct: 786 ------SEETVKREAEAGGDSVRIMTAHGSKGLQARLVILPDTVGLPRFEERLFWAHDKK 839 Query: 774 ---------FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRR 824 L + D+ + + E RLLYVALTR+ + R Sbjct: 840 QNIDVPLYVPRNALSVGLTRSLKDVMRSRVVEEYNRLLYVALTRAADRLVVCGWKPGRNV 899 Query: 825 GDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVS 884 + E G + L ++ + Sbjct: 900 PAESWYERCRIG--FEKAGATEIDFQEGGWSGSMLLLEETPQEEVNPKKSVPTSVEKSED 957 Query: 885 TAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQ 944 TA L + S L + ++ L + + Sbjct: 958 TALLPQWMGTAPLWKPTLPEAESPLARPLA-PSKPDDAMLGPLPPVRSPLDIAAVTPAKA 1016 Query: 945 FPRGASPGTFLHSLFEDLDFTQPVDPNWVREK---LELGGFESQWEPVLTEWITAVLQAP 1001 G +HSL + L + + G S L + + AVL Sbjct: 1017 REAAFRRGNLVHSLLQFLPACSAEQQPAMAHQWLARPASGLSSHEAAELAQQVIAVL--- 1073 Query: 1002 LNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM 1061 +L L FDP + L + + Sbjct: 1074 ---------------------------------RLPELADLFDPSARAEQRLAGVAGGQV 1100 Query: 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQ 1110 + G +D + + + D+K+ T M A+R LQ Sbjct: 1101 IVGQVDRLRVLPNKVLVCDFKTGRHAPRGVEDTPVLYLRQMAAYRALLQ 1149 >UniRef50_C7HSP5 Putative uncharacterized protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSP5_9FIRM Length = 1139 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 192/1212 (15%), Positives = 403/1212 (33%), Gaps = 213/1212 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 ++ A+AG+GKT + + ++L + ++ +++VTFT A+ E++ RIR Sbjct: 28 NIIVSAAAGSGKTRVLVDRLVSIML--------EEKIPIKNMIIVTFTNKASVEMKDRIR 79 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 ++EL ++E + ++ + + +++A + T+H FC ML Sbjct: 80 QKLNEL----MKEGNSDKIF----------------IKNQIKSINDAFIKTLHSFCADML 119 Query: 138 NLNAFESG-MLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 N + S + ++ D ++LLR A + + + Sbjct: 120 RENFYLSDNLSPSFKIAADSKQALLRKDAIDELFEDEYEKNDSNFINFLHNFASSKDD-- 177 Query: 195 RDINRYLQGEAPVIKAPPPDDETLAS------RHAQIVARIDTVKQQWRDAVGELDALIE 248 +D + K+ + L + I + +L+ I+ Sbjct: 178 KDAKNIILDLYDFSKSQINPHQWLCDNTNNNFDFEKFKFYIKERIETIILNARDLEDYIK 237 Query: 249 SSGIDRRKF-NRSNQAKWIDKISAWAEEETNSYQLPESLEKFS-----QRFLEDRTK--- 299 + + F +++KI EE+T + + + L+D + Sbjct: 238 EKSMRDKYFIMIEKDLSYLEKIKNSIEEKTWDEVIEIFENGLANMVTISKKLDDPNENAY 297 Query: 300 -AGGETPRHPLFEAIDQLLAEPLSIRDLV-----------ITRALAEIRETVAREKRRRG 347 + F + + SI + + + +KR Sbjct: 298 VKAKKNAYKDEFNIVKDFVKNTDSITRGFFNPLEDKILNELKNLVFSFEKIYTNKKREEN 357 Query: 348 ELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET 407 L F DM L E L + ++ +F DE+QD++ Q I ++ + E Sbjct: 358 YLDFSDMEHEFIKLL---DNEKLQSKLKKQFKYIFFDEYQDSNDIQNYIVEKL---KNEN 411 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-----HYTLDTNWRSAPGMVNSVNKLFS 462 L +GD KQ+IY FR A ++K L N+R+ +++ N +F Sbjct: 412 NLFFVGDVKQSIYGFRNARPELFLKKLEGYDTDSNCLRINLSKNFRTDKDLIDFNNYIFD 471 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC 522 + I K F F + S + Sbjct: 472 RLMTRKNSD----IAYKDDNHRLNYHFEFDEK---------YPKVSIKALAKNVSEEAYL 518 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 +I + + +G + DI++L+RS +A + L IP Sbjct: 519 TKEINNLINSG---------------LEYKDIAILLRSSSKAYLFENELKRAGIPFSSDI 563 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN---NDEHAWD 639 ++ S FET+E + + +L+ + P + +L S L + + + D+ ++ H + Sbjct: 564 SKIS-FETVEVEFFINILKYIANPNDDISLLSVLRSEIFNFSEDDLAEISLSSEKSHFYK 622 Query: 640 VVVEE------------------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGE 681 E F + I + + + L A GE Sbjct: 623 KFKEYEKENENNLSQKISDFNTIFTDFSYILNFSTMYDFANIIFEKSGFYDFLKARDRGE 682 Query: 682 RRLTDILHISELLQEAGTQLES-EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT 740 R+ +I EL+ + E+ + ++ + + L D++LV+I+T Sbjct: 683 ERVKNIEAFIELMDDYDKNNENSLFGFLAYIDNLKNQK-KDNLKASRNLSDDENLVRIMT 741 Query: 741 IHKSKGLEYPLVWLPFITNF---RVQEQAFYHDRHSFEAV----------LDLNAAPESV 787 IHKSKGLE+ V LP + R + D+ + + + Sbjct: 742 IHKSKGLEFKAVILPDFSKRFNTRDNSKDMVLDKDLGIGINIADWENKIKISSIKRDLIL 801 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKK--------GDTDVHQSALG 839 + + E++R+LYVALTR+ S+ + ++G +K + L Sbjct: 802 EKSNLNDKKEEMRVLYVALTRAERKISIIGKKDLNQKGLEKILNANSVLDLSSYMDWILK 861 Query: 840 RLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGD 899 L D + +A + + + + + A + Sbjct: 862 ILCDDKIMSDFIDIDYKTDAFNKGFLEIKYIEDFIEDYKKDYTDVEKLIGADEYNQKIYK 921 Query: 900 N-WRVTSYSG-----LQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR------ 947 + V ++S + + ++ D+ G E ++F + Sbjct: 922 DIEEVFNFSYKNKENINKSLKKSVTEIAKNYDLSKDGYEKSPFEENEAFYEFRKPNFEEI 981 Query: 948 ---GASPGTFLHSLFEDLD---FTQPVDPNWVREKLELGGFESQWEPVLT-EWITAVLQA 1000 GT +H +F++L+ + + + ++LG + ++ P + E I + Sbjct: 982 KLSATDKGTLIHKIFQELEVKSYDLNSLEKEINKLVDLGKIKKEYLPYINFENILGFFNS 1041 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 + + + + + E F I + Sbjct: 1042 KIIQDLMK----KSPKIRKEESFLRKIDDF------------------------------ 1067 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 + G ID++F + L+D+K++ + + YD Q ++Y ++ Sbjct: 1068 YVNGQIDIMFESQNEVVLMDFKTDSIKREG---------------FYDKQLEIYKDSIEE 1112 Query: 1121 YLRHRI-ADYDY 1131 L ++ + Y Y Sbjct: 1113 ALGKKVISSYIY 1124 >UniRef50_Q4FSN0 DNA helicase/exodeoxyribonuclease V, beta subunit n=2 Tax=Psychrobacter RepID=Q4FSN0_PSYA2 Length = 1495 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 272/1315 (20%), Positives = 495/1315 (37%), Gaps = 220/1315 (16%) Query: 66 EAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDK------AQAAQWLLLAER 119 A E R + + + + A L ++P+ L+ + D +A + L Sbjct: 191 RAQAKE--KRKKWLVEQAKYARLDGIMEDPINLHLVGYLLDHVHSYPMTEAIRRTALVLT 248 Query: 120 QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRR---HCYP 174 +D+ V T+ Q+ L + E+G +IED + D R+ Y Sbjct: 249 TLDKLFVGTLDSLAQKWLIEYSSETGHQQGMAIIEDSSIEQVTDSIIHDELRQFQSRLYH 308 Query: 175 LPREIAQVVFETWK-----GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI 229 ++ ++ + K + + ++ IK D R A++ Sbjct: 309 EQPKLYALMDQQGKLTAVSDHKKYVTRSLNFISAPIDEIKLEQGFDFVSYERLLNEFAQL 368 Query: 230 D--TVKQQWRDAVGELDALIESSGIDRR-----KFNRSNQAKWIDKISAWAEEETNSYQL 282 D ++ + +S + ++ + ++ + S E E Sbjct: 369 DLVDIQPYLNPDYRKSQGFNGASNLFKQFDAIIEVHQKIAEYKLAFTSYLNERENKILTS 428 Query: 283 PESLEKFSQRFLEDRTKAGGETPRHPLFEA------------IDQLLAEPLSIRDLVITR 330 + ++ E FE D L L + + Sbjct: 429 LQDSRYPNEDGKIKNFNKNKEKEHETFFELETISKLMALLDMADGLNQHILLVSANLNRH 488 Query: 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTD 390 + +R+ + RGE F ++RL+ AL GE LA IR +PVA+IDE QD + Sbjct: 489 IVLAVRDRLPIILEERGETTFSLQMARLNQALTGRQGEKLARYIRHHYPVALIDESQDIN 548 Query: 391 PQQYRIFRRIWHHQPETA-----------------LLLIGDPKQAIYAFRGADIFTYMKA 433 +Q + I+ + + LLL+GDPKQAIY FRG D+ Y Sbjct: 549 GEQAIMIESIYLPKSKRKQLANDKPLSTNKVSHEFLLLVGDPKQAIYGFRGGDVANYNYM 608 Query: 434 RSEVHAH--YTLDTNWRSAPGMVNSVNKLF-------SQTDDAFMFREIPFIPVKSAGKN 484 +++ +TLD N RS G+++++N F ++ A + I + +K+ Sbjct: 609 KAQFEKSSLWTLDINRRSNAGVIDALNCWFGMPTVTTAENKLAQLGSSIYYQHIKADKPE 668 Query: 485 QALRFVFKGETQPAMKM-WLMEGESCGV------GDYQSTMAQVCAAQIRDWLQAGQRGE 537 L + Q + + ++ + V + + ++ A I L +GQ Sbjct: 669 NQLSWFNDLTVQNSTLVTEILSAQPVSVLHLPYDKELEYDEHEITARHIATLLGSGQ--- 725 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEML 597 +P++ SDI VL R++++ +V D L L +P++ S+ S+FET+ A+++ Sbjct: 726 -----TLKGKPIQPSDIGVLARTKKDLKRVEDELLKLNVPTLTTSDV-SIFETIMAEDVA 779 Query: 598 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND----------------------- 634 LL A++ P R + + L + + GL+ ++ + D Sbjct: 780 ALLSAMLYPYRHDMINRVLTSHLYGLSIKAVKAMMTDHESGVTESGDTIISTHSNSTNVK 839 Query: 635 ----EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMS-----ARNIAENLLATAGGERRLT 685 + ++ + Q W+ G++ L L+ + + + L A G R + Sbjct: 840 AVDNKKSYQDFITYLKQAAQNWQHFGILSALHYLLDKNPVQPQGVWQALAAHPEGARHIM 899 Query: 686 DILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSK 745 D+ H+ ++L + G + EH L+ W Q+I ++ ++Q L ++ VQ++TIHKSK Sbjct: 900 DLRHMMDVLAQYGIGM-GEHELLAWFRQNIEAAPNSDWAKQYPLPTESG-VQLMTIHKSK 957 Query: 746 GLEYPLVWLPFITNFRVQEQA-------FYHDRHSFEAVLDLNAAPESV----------- 787 GLE+P+V++ + + + Y+ + + A++ + + + Sbjct: 958 GLEFPIVYVLGMGDASRKSGNKEDYGLYLYNAQQNPSALVQQSTSNQRRFSPVKGSATTE 1017 Query: 788 ----DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG-DKKGDTDVHQSALGRLL 842 D+ E E RL YVA TR+ + + + G + K + + Sbjct: 1018 GYYTDIETQEDFDELRRLGYVAFTRASEQLYVVLRDPNSKTGFELKPVFYWFDAPEAKFD 1077 Query: 843 QKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRL----PG 898 + G+ + + N T + + Sbjct: 1078 LPDRLKGTIGMIRGHKVNEFYNDDTNAVGLAGNTTLATAKPITEAIEYAAFSEVMKTDYF 1137 Query: 899 DNWRVTSYSGLQQRGHGIAQDL-------MPRLDVD--------------AAGVASVVEE 937 W TS++ L ++ Q L LD+D ++ Sbjct: 1138 YGWAKTSFTALARQLDESTQALAVVDERMDDALDIDITESIVSFSSNQSLEPVSDLSLKS 1197 Query: 938 PTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREK--------------------- 976 F +GA+ GTFLH +FE +DF+ + V ++ Sbjct: 1198 EDDIRFTFVKGANAGTFLHEIFEKIDFSNKSQWSQVIDRAVSSYQLPLVYSSAEQQSRLL 1257 Query: 977 ----------LELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 ++L ++ L WI VLQAPL + L + A + E+EF + Sbjct: 1258 QAKKKEDSRPVDLNSIDATKHEALIGWIEEVLQAPLLASNQPLQSIHAEQRFAELEFNMG 1317 Query: 1027 ISEPLIASQLDTLIRQFDPLSA----GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYK 1082 +SE A ++ L +Q+ P A P + L+G IDLV+ H G+YY++DYK Sbjct: 1318 LSESFKAQDINRLFQQYLPNEADKHVNLVPQNKTHLYRYLRGEIDLVYEHAGKYYVVDYK 1377 Query: 1083 SNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY--DYEHHFGGVIY 1140 SN+LG Y + + AM Y LQ +Y +ALHR+L RI+DY + + + G V Y Sbjct: 1378 SNYLGNSLIDYDESTLKQAMSKAGYWLQAAIYQVALHRFLAMRISDYSGNEDKYLGAVEY 1437 Query: 1141 LFLRGV-------------DKEHPQQ---------GIYTTRPNAGLIALMDEMFA 1173 +FLRGV D P G+ T I +D +F Sbjct: 1438 VFLRGVYDSDSQAAADVSQDVNKPDNSLSMHNERYGLVTWDIPIEFIKALDALFG 1492 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%) Query: 1 MSDVAET-LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 MS+ E + + + L G+ LIEASAGTGKT+T+ + LRLL+ + E++ Sbjct: 47 MSEQKENVIPAVDVALTGQHLIEASAGTGKTWTLTGIVLRLLIEARRA--------PEQI 98 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLR 89 + TFT AA AE+R RI + + Sbjct: 99 IATTFTRAAAAEMRQRIHDRLVDFYQLLQW 128 >UniRef50_D1BPN9 Recombination helicase AddA n=3 Tax=Veillonella RepID=D1BPN9_VEIPT Length = 1288 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 179/1031 (17%), Positives = 362/1031 (35%), Gaps = 145/1031 (14%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 L+ A+AG+GKT + + L PL+V+EL+VVTFT+AA E+ R Sbjct: 23 NQTLLVAAAAGSGKTAVLVERIITRLKD------MDNPLSVQELMVVTFTKAAAQEMSAR 76 Query: 76 IRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 I + + E + A + L + A + T+H FCQ Sbjct: 77 IGLALAKA------------------MESTEDAAMQERLERQLNLLPSAHISTLHSFCQW 118 Query: 136 MLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFET------- 186 ++ ++ + ++ + LL+ + AD + I ++ Sbjct: 119 VIRSYFYKLDINPTARIGNEAEMALLQQEVLADLLTKSYEEGLYNIYELADFFSDDKSDA 178 Query: 187 ---------------WKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDT 231 P LR + + + E + S H ++ RI Sbjct: 179 GLTAKIMSLYNYAMSLANPDGWLRKALEPYKEAMNINPSDTMWGEYMWSNHLAVIDRIRE 238 Query: 232 VKQQWRDAV----------GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE----T 277 + + D + + + + ++ + + +++ + Sbjct: 239 RLGRMEQILLNPVGPHKWQNIYDNQLAALSMLSAAQSWNDMGDACKHMDTFIKDQFRMGS 298 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV---ITRALAE 334 Q+ + + + L + K + + +F + L E + + + Sbjct: 299 KEAQVYDPILVAEFKSLGVQNKDDLKAMQTAIFTVPEATLQEQFKAQYPIIEGLVELTIA 358 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSAL------RSESGEVLAAAIRTRFPVAMIDEFQD 388 + K+ +G + F D+ + L +A ++ F M+DE+QD Sbjct: 359 FHKAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSEVAKELQDTFKEIMVDEYQD 418 Query: 389 TDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEV------HAHYT 442 T+ Q I I +GD KQAIY+FR AD +M+ + Sbjct: 419 TNGVQETIINLISRVDNR---FYVGDVKQAIYSFRMADSSLFMEKYNTYGGTDAVERRID 475 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L N+RS ++ + N LF Q E+ + +S + + V + +++ Sbjct: 476 LAKNFRSDANILAATNFLFYQIMTED-AAELNYTEAESLIPGRIVEDVPEDWVGGDVELQ 534 Query: 503 LME------------GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 L++ + + +I++ A ++ + R + Sbjct: 535 LLDVSKDTLGASESDEDEGDDPENNERELDFIIQKIKEIHAAKKQVQNPD---GTFRQIE 591 Query: 551 ASDISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 D ++L RS + +A+ IP+V ++ RD FE E Q +L LL + PE++ Sbjct: 592 WRDFAILRRSLAGWGTRAVEAMRQAGIPAV-VNERDGYFEAQEIQLLLALLSIIDNPEQD 650 Query: 610 NTLRSALATSMMGLNALDIETLN-----------------NDEHAWDVVVEEFDGYRQIW 652 + + L + ++GL+A ++ L + + + +R + Sbjct: 651 LPMAAVLHSGLVGLDANELGALRLSGEGSLWSLMPAYAEVAQDERLLAFIGHMERWRTLS 710 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQ-EAGTQLESEHALVRWL 711 R+ GV +L + +++ + A G R ++L + + + + +R++ Sbjct: 711 RRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDRAKGYEASGFRGLFRFLRFV 770 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ---EQAFY 768 L + + ++V+++TIHKSKGLE+P+V+L + Sbjct: 771 E--SLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFLSGVQKRFNMMDLRSELL 828 Query: 769 HDRHSFEAVLDLNAAPE----------SVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 D+++ + D+ EA AE+ R+LYVALTR+ + Sbjct: 829 IDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVALTRARDKLFMTG- 887 Query: 819 PLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPW 878 ++ + KG S +G L++ + L T I + + W + Sbjct: 888 -FIKGFKNSKG----VLSTMGELIKNAASVETQQLPTDIITQANTYLDWMMMGFARHLDG 942 Query: 879 QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQ--DLMPRLDVDAAGVASVVE 936 E T LP R L+ H + DL + D+D + V + Sbjct: 943 GNPLRVAIEYEGPTYFDLPDKQCR------LKVEIHDGSLYGDLDYKADIDETTINKVRD 996 Query: 937 EPTLTPHQFPR 947 + + P+ Sbjct: 997 LKAVNSVELPQ 1007 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 70/225 (31%), Gaps = 39/225 (17%) Query: 916 IAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLD---FTQPVDPNW 972 Q + D A V + + GA GT +H + L +TQ Sbjct: 1091 SVQPVKVSEDDLANSVFGRKPQALQSKEDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKE 1150 Query: 973 VREKLELGGFESQWEPVLTE-WITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + + G F + +L++ + + L + ++A+ + E+ F + Sbjct: 1151 LDALVAKGTFTEEERNLLSDTSLYKFFSSDLGKRL-----INAKRIERELPFSMLFEGKR 1205 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSS 1091 + L L+G ID F G + L+DYK++ + Sbjct: 1206 VYDTL------------------EDGENLFLQGIIDTAFEESGEWVLVDYKTDRVTSGED 1247 Query: 1092 AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIAD-YDYEHHF 1135 RY +Q LY AL R + Y Y Sbjct: 1248 -----------LIKRYKIQMDLYKEALQRLTGMPVKACYIYSFRL 1281 >UniRef50_C7RGF9 UvrD/REP helicase n=3 Tax=Anaerococcus RepID=C7RGF9_ANAPD Length = 1121 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 206/1218 (16%), Positives = 409/1218 (33%), Gaps = 206/1218 (16%) Query: 1 MSDVAETLDP-LRLPLQG-ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEE 58 M+ + + D + +G ++ A+AG+GKT + +RLL+ + Sbjct: 1 MTKMEFSKDQKAAIETRGKNIIVSAAAGSGKTSVLVTRIIRLLIEDRK--------DIGS 52 Query: 59 LLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAE 118 ++VTFT A+ E++ RIR+ + EE+ K +++ Sbjct: 53 FIIVTFTNKASVEMKDRIRTALE--------------------EELKKKGSDLKFIKDQL 92 Query: 119 RQMDEAAVFTIHGFCQRMLNL-NAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPL 175 + + A + T+H FC ML + + ++I + + L+ A + + + + Sbjct: 93 KNLKHAQIKTLHSFCADMLRENFYYFDDLSPNFKVISENTATILKSNAIDEVFDKRYEQM 152 Query: 176 PREIAQVVFET-------------WKGPQALLRDIN--RYLQGEAPVIKAPPPDDETLAS 220 + K + ++ ++ +L ET+ S Sbjct: 153 DPAFENFLHNFATNKSDSGAKDIILKTYEKIMAEVRPIAWLDQATSEGFKLDKFKETVRS 212 Query: 221 RHAQIVARI-------------DTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWID 267 QI+ D ++ D +++ L D KF R Sbjct: 213 EMDQILDLARTNYDFTMGQGMRDKHQELIFDDFSQINDLTILLDKDWDKFIRKIGKIKFG 272 Query: 268 KISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV 327 +IS ++ Y + + +++ K T + +L A+ Sbjct: 273 RISKSKKDVEEDYSFIKDTRDLYKEDIKNVAKFVTNTDSLTM-----ELFAKKEEDLLSE 327 Query: 328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQ 387 I + + + R K + L F DM + + E +R + DE+Q Sbjct: 328 INVLVKDFMKVYRRLKEEKAYLDFSDMEHKFIDLIDIEEA---RNKLRETYKYIFFDEYQ 384 Query: 388 DTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHA-----HYT 442 D++ Q I ++ L +GD KQ+IY FR A+ +++ Sbjct: 385 DSNEIQNYIIEKLKGED---NLFFVGDVKQSIYGFRRAEPKLFLEKLEAYDKDDKSVRID 441 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW 502 L+ N+RS +++ N +F + +E I + G R F Q A Sbjct: 442 LNKNFRSQKDVLDFDNFIFDRLM----TKEESDIDYRDGGH----RLNFNKNEQSA---- 489 Query: 503 LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQ 562 E + V D + A I + G DI++L+RS Sbjct: 490 -YERANIKVIDSKIREEDYLAKLIEEIRAMG---------------YDYRDIAILLRSGG 533 Query: 563 EAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG 622 ++ +A EIP ++ S F +E + LL+ + P+ + TL S L + + Sbjct: 534 KSYVYEEAFKKAEIPFFNDISKVS-FRAVEVTFFINLLKYLANPKDDLTLLSLLRSEIFD 592 Query: 623 LNALDIETLNNDEHAW------------DVVVEEFDGYRQIWRKR-------GVMPMLRA 663 + D+ + ++ + +VE+ + ++ I+ + Sbjct: 593 FDEDDLVEIRLSSDSYSFTKAFDEYDKDEEIVEKINDFKTIFADLTYVKNLLSLYEFANY 652 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEHALVRWLSQHILEPDSNA 722 + E LLA R+ ++ +++ E T + ++ + S+ Sbjct: 653 VFEKTGFYEYLLARDRASDRINNVESFIDIMDEYDRTNDNGLFGFLEFVDSLSINQ-SDN 711 Query: 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--FYHDRHSFEAVLDL 780 L + LV+I+TIHKSKGLE+P+V L + ++L Sbjct: 712 IQTTRELSEAEDLVRIMTIHKSKGLEFPVVILADCGKRFNNKHLREPIVFDDDLGIGINL 771 Query: 781 NAAPESV-----------DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 + + D E E++R+LYVA+TR+ + ++ G KG Sbjct: 772 SDYENKLRFSSLRKNLINDKITKENKKEEMRILYVAMTRAEEMLFITGERNLKTVGRLKG 831 Query: 830 D------TDVHQSALGRL--------LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDN 875 + L L L + +A +E + + D + Sbjct: 832 RIDFLNMSTYMDWILSILSRDKVSEELFEEYETNALDGLASLEVIEESDPIDKFESKDIT 891 Query: 876 QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD------VDAA 929 + DV+ N + + +++ I++D P LD + Sbjct: 892 DFLKSEDVNQEIYNKLKQIFDSPYPYEDQTRESIKRSVTEISKDFDPSLDGYRLPNYEEN 951 Query: 930 GVASVVEEPTLTPHQFP-RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEP 988 +A + + + GT +H +F+ LDF + D ++E+++ E + E Sbjct: 952 ELAGDFRKANFIREEKSYKATDKGTMIHRIFQALDF-KDYDKVSLKEEIDRLIREKRIEE 1010 Query: 989 VLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSA 1048 + L L E F IS+ + Sbjct: 1011 ----------------DSLDLVDLDKILGFFEDPFIKDISQKATNIR------------- 1041 Query: 1049 GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYD 1108 + G IDL+F + + L+D+K++ + + Y Sbjct: 1042 KEESFLMTYEDYYVNGQIDLIFEIDDKVILIDFKTDR---------------TKRENLYK 1086 Query: 1109 LQYQLYTLALHRYLRHRI 1126 Q Q+Y A+ + L ++ Sbjct: 1087 KQIQIYRQAIEKSLGKKV 1104 >UniRef50_D0SSR4 Exodeoxyribonuclease V, beta subunit n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SSR4_ACILW Length = 1367 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 253/1077 (23%), Positives = 413/1077 (38%), Gaps = 124/1077 (11%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M T + +G IEASAGTGKT+T+++L +R+ L +++ Sbjct: 1 MQKAISTNPIQDMKFRGLHWIEASAGTGKTYTLSSLMVRIFLDQYY---------PHQVI 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLR-------------ETTDNPLYERLLEEIDDK 107 TFT ATAEL+ R+R + E R + +PL++++L++ + Sbjct: 52 ATTFTRKATAELKNRVRLRVEETLAYIQRHQQLNSVEITAKIQNETDPLFQQVLKDYGSR 111 Query: 108 -AQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACAD 166 A + L L Q+DE V T+ F Q++L AFESG + +L ED+ L Q D Sbjct: 112 LDYARRRLRLVLNQLDELFVGTLDSFSQKLLREFAFESGKIERAELTEDQDLYIQQLIHD 171 Query: 167 FWRRHCYPLPREIAQVVF-ETWKGPQA----LLRDINRYLQGEAPVIKAPPPDDETLASR 221 R P+ + ++ + P L+RD + + I+ D L + Sbjct: 172 VLRDWIQQQPQYMVNHLYVQNLLKPVEHYTGLVRDALNFSKQHFRKIEPAECDLNKLEAC 231 Query: 222 HAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQ 281 +Q+V D R E S + + N W SA + + Sbjct: 232 ISQLVNIQDHDLAVMRRYCQESPKYFHKSFLTKLTEICENFMTW----SAALKNQGGMSF 287 Query: 282 LPESLEKFSQRFLEDRTKAGGETPRHPLFE------------------------AIDQLL 317 L+ R K P +F + Q L Sbjct: 288 FDAELQPIILNLCHLRRKKTDFQPTTQVFNKSCPDAEQQLILQHSLIVAIDALCEVKQYL 347 Query: 318 AEPLSIRDLVI-TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRT 376 E L + + ++ + + +++GE F + L AL+ + G+ A ++ Sbjct: 348 DEQLQQLTTYLEFHIIQSVQTRLPQTLQQQGETTFSQQIRTLAEALQGQQGQRFAQFVQA 407 Query: 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPE---TALLLIGDPKQAIYAFRGADIFTYMKA 433 R+P+ ++DEFQDT+ Q + +IW ++++GDPKQAIY FRG D+ TY KA Sbjct: 408 RYPLILVDEFQDTNQDQDDLLAKIWRDVNRVQSGCMIMVGDPKQAIYGFRGGDMLTYNKA 467 Query: 434 ----RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRF 489 R + YTL N RS +V V+ LF + D F E + AG Sbjct: 468 HADVRHKQGREYTLMQNHRSVKPLVEVVDALFQRQMD---FGEQVQYTLIQAGSRPHPDL 524 Query: 490 VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549 V G T P W+ GES A A +IR L + + + + Sbjct: 525 VDTGITNPQPLRWIQLGESD-------LEADQVAWKIRALLNQSAQQQLYFQQQEHQHSL 577 Query: 550 RASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERE 609 A DI+VL QV+ L + IP Y ++ SVF + AQ++ +L A+M P E Sbjct: 578 SADDIAVLGFGHFALEQVKQRLQRMGIPC-YKESKQSVFASPIAQDVAAVLTAIMDPFNE 636 Query: 610 NTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARN 669 ++ AL T ++G N + L + + D R++W ++G + ++ Sbjct: 637 AKVKRALLTRLLGFNLKKLIDLQGQSEGLSRYIADLDIIREMWFEKGFLTAWNYALNLFQ 696 Query: 670 IAENLLA--TAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727 + NL+A + ER + ++ H++E+L + + L W + + P S ++ Sbjct: 697 VWTNLVASQSLDNERVVVNLRHLTEILSQQSEYYQGAQKLYHWYLRQLQSPSGKDSEKER 756 Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV------------QEQAFYHDRHSFE 775 +L S H VQ++TIH SKGLE+ +V+L EQ ++ Sbjct: 757 KL-SGDHGVQLMTIHASKGLEFKVVFLLGADAAFDVNKGNLNFSLSAPEQDNILEQSRVI 815 Query: 776 AVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ 835 AV N +++ A AE+ RL YVALTR+ + Sbjct: 816 AVNHKNLHEQAILQNAARNAAENHRLWYVALTRASHRVY----------AMLQDQNAQSD 865 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQR 895 S L +G+ L L + + ++ ++ A+ L Sbjct: 866 SGLAFWRGQGDQLFQHALSLVEPPLSQEPPRL----------VEQSNHHQVDMRAQPLPE 915 Query: 896 LPGDNWRVTSYSGLQQRGHG--------IAQDLMPRLDVDAAGVASVVEEPTLTPHQ--- 944 TS++ L Q + P D + E+P P Sbjct: 916 RQFYPRTKTSFTALSQHQLHGHILQDDLVTAYEQPDSAADEIHFTGLEEQPAAVPLDWIR 975 Query: 945 --FPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQ 999 FP+G GTFLHS+FE +DF N + W+ L E Sbjct: 976 LNFPKGTVAGTFLHSIFEHIDFQDSSYWNLEIRRRFKNTAPQIWQE-LKEKFEQAFH 1031 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 4/191 (2%) Query: 983 ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQ 1042 E ++ +W+ +L P+ + +L+QL A+ E FYL +++ Q+ + + Sbjct: 1173 EDILLNLMHDWVHDILATPI-QVDFALAQLEAKQYLSEFPFYLSLTDA--PLQIRQIHQL 1229 Query: 1043 FDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 F + L G IDLV+ RY++ DYKSN+LG D Y+ +A+ M Sbjct: 1230 FLGHDIVMSDFNEAKSARYLTGSIDLVYFDGQRYHIADYKSNFLGPDQQHYSAEAIQQNM 1289 Query: 1103 QAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNA 1162 Y LQ LY +ALHRYL + Y H GG YL+LRG++ + QQG Y +P+ Sbjct: 1290 SQSSYWLQAALYLVALHRYLSANMQGYSITQHLGGATYLYLRGMNGQ-VQQGAYHWQPSL 1348 Query: 1163 GLIALMDEMFA 1173 I +D++ Sbjct: 1349 EFIEKLDQILG 1359 >UniRef50_C8S137 Double-strand break repair helicase AddA n=1 Tax=Rhodobacter sp. SW2 RepID=C8S137_9RHOB Length = 1090 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 217/1174 (18%), Positives = 388/1174 (33%), Gaps = 159/1174 (13%) Query: 1 MS-DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 M+ + A + A+AG+GKT + RLLL + + Sbjct: 1 MTRNDASARQVQAADPGRSTWLAANAGSGKTRVLTDRVARLLLE---------GVEPGRI 51 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE--EIDDKAQAAQWLLLA 117 L +T+T+AA +E++ R+ + + + + + +A Q A Sbjct: 52 LCLTYTKAAASEMQNRLFRRLGGWAMLEDDALRAALADLGVAGAVQPETLGKARQLFARA 111 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIED-ESLLRYQACADFWRRHCYPLP 176 + TIH FC +L E+G+ + ++D + L D P Sbjct: 112 IETPGGLRIQTIHSFCASLLRRFPLEAGVSPQFTELDDRAASLLRDEIVDELAEFGAPEA 171 Query: 177 REIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQW 236 + + E P+ A L Sbjct: 172 VADLARAYTGEDFSALAAEVAGQRRWFERPLNDADCRALFGLPKGLTAETLLAQVFLGGE 231 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQAKWID--KISAWAEEETNSYQLPESLEKFSQRFL 294 + + ++ +++ + + K +A ++ ++ A E P++ E F+ + Sbjct: 232 AEWLAQVASVMATGSANDVKAADKLRALRLEVPDLAVLAALEDVLLTGPKAAEPFTAKLG 291 Query: 295 EDRTKAGG----------ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKR 344 TKA + + A + +A + R ++ A A K Sbjct: 292 SFPTKATQPKLGPLLPRLQDLMRRVEAAREDRMALLAADRTRILHAFAAAFLPRYAARKL 351 Query: 345 RRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 RG L FDD+++R + L S + + + ++DE QDT P+Q+ + R + Sbjct: 352 ARGALDFDDLIARAKALLTDPSVAQWVLFRLDGGIDHILVDEAQDTSPEQWDVIRLLAQE 411 Query: 404 --------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDT 445 + ++GD KQ+IY+F+GAD+ + +S A+ L+ Sbjct: 412 FTAGRGARDVPRTIFVVGDKKQSIYSFQGADVGAFEAMQSLFRANLAQVNTPLQGLELEY 471 Query: 446 NWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ-ALRFVFKGETQPAMKMWLM 504 ++RS+P ++ V+ F T A + ++ I KSA Q L + +P W Sbjct: 472 SFRSSPLILRLVDLTFDATTHADVGGKVNHIAFKSAMPGQVELWPALEPSGKPEDGDWFD 531 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE- 563 + + + + AA+I++ + AG + RPV A D VLVR R Sbjct: 532 PVDLISDEHVAARLGRQVAARIKNMIDAGVQIPV----DGGERPVHAGDFLVLVRRRSAV 587 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A++ A +P + ++R + + +++ LL + TPE + L L + ++G Sbjct: 588 FAEIIRACKAAGLP-IAGADRLKLGGEMAVKDLASLLAFLATPEDDLALAEVLRSPLLGW 646 Query: 624 NALDIETLNNDEH--AWDVVVEE--------FDGYRQIWRKRGVMPMLRALMSARNIAEN 673 + TL W + + R ++ ++ + Sbjct: 647 TEGQLYTLAQGRTGYLWQALRQADAPETLAILHDLRDQADFLRPFDLIERALTRHDGRRL 706 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 LLA G E +S+ L + S + WL ++ + + +S Sbjct: 707 LLARLGPEAEDGIDELLSQALAYERNDVPSLTGFLSWLQ-------TDDVEVKRQADSAG 759 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAP------ESV 787 ++++T+H +KGLE P+V LP + +++A + + A E+ Sbjct: 760 RRIRVMTVHGAKGLEAPIVILPDTADHAPRDRAELYRLADGSMIWKTAAEDSPAPTREAR 819 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 + AE LRLLYVA+TR+ C L VA + G D Sbjct: 820 EARRLAAEAESLRLLYVAMTRA--QCWLMVAAAGKVSGASWHDRIRAGMMAAGAEAAVGG 877 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 E I+ + Sbjct: 878 GLILRGGVWPENAPRAGISAADLPALPD-------------------------------- 905 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP 967 QR + L G A V+ P GT LH L E L P Sbjct: 906 -WAQRHAPVPPTAEKPLSPSDLGGAKVL--PGDLAGDTAAAKLRGTRLHLLLEHLPGQDP 962 Query: 968 VDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPI 1027 + E L E++ L T VL AP L+ + A + E+ I Sbjct: 963 ALWPALAESLLA---EAEDRLALLAEATTVLTAP------DLAPIFAADALKEVSVTAEI 1013 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLG 1087 L G ID + R +DYKSN + Sbjct: 1014 DGKR------------------------------LYGTIDRLILLPDRVLAIDYKSNSVI 1043 Query: 1088 EDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 +SA + + Q + Y AL + Sbjct: 1044 PATSAQVPEGLLR---------QMRAYAAALAQI 1068 >UniRef50_B8GTW0 UvrD/REP helicase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTW0_THISH Length = 1147 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 224/1212 (18%), Positives = 411/1212 (33%), Gaps = 171/1212 (14%) Query: 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70 L + ASAG+GKT+ + LRLLL + +L VTFT A Sbjct: 16 LATDPSLNISVFASAGSGKTYLLVTRILRLLL---------AGARPDGILAVTFTRLAAG 66 Query: 71 ELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIH 130 E++ R+ + E + + + + +A + T H Sbjct: 67 EMQSRLTERLREWQTLDDTALDRALADMGVSVDDAVRERARRLFEQTLLADRPVRATTFH 126 Query: 131 GFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV---FETW 187 FCQ +L E+ + +L ++E L+ +A +A+ + T Sbjct: 127 AFCQDLLARFPLEARVPPGFELADNERELQDRAWDALVSEATRAPDATVARALETLIATL 186 Query: 188 KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI----------DTVKQQWR 237 ++ + ++ +L + + LA A+I + D + R Sbjct: 187 NSVDSVRKALDGFLSHREDWWAWTEHEADPLAFARARITEALAVDPDADPRGDCLDPATR 246 Query: 238 DAVGELDALI-ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLED 296 + +L AL+ ++ D+ A I E + ++ + ++ Sbjct: 247 ADLTDLAALLARNTSTDKPLGQALADALAIGDTGVLFEAARAALLTQKNTPRVRKQSAAQ 306 Query: 297 RTKAGGETPRHPLFE-----------AIDQLLAEPLSIRDLVITRALAEIRETVAREKRR 345 + GGE L A+D L + + A E K Sbjct: 307 AKRLGGEAAEDRLLALHGTLCERWLAALDGLARQHSLRLNGAWFSAGLRYLEHYQALKEE 366 Query: 346 RGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--- 401 L F D+ R L + + + +R +IDEFQDT+P Q+R+ + Sbjct: 367 LRTLDFTDLEWRAYQLLNHGDHALWVQYRLDSRIEHLLIDEFQDTNPTQWRLILPLLEEL 426 Query: 402 ---HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY-----TLDTNWRSAPGM 453 + ++ L+GD KQ+IY+FR AD A + TLD +WRS+P + Sbjct: 427 AAHGERQGRSVFLVGDTKQSIYSFRRADPRLQEIAARWIEERLNGRPETLDWSWRSSPAV 486 Query: 454 VNSVNKLFSQTDDAFMFREIPFIPVKSA-----GKNQALRFVFKGETQPA-------MKM 501 ++ VN++F+ A F P + G+ + + + ++ Sbjct: 487 MDFVNRVFTACP-ALRAALPGFHPHDTHLKDLWGRVEVWPLIQADQETEEDTPASQGLRD 545 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 L + AA+IR+ + GQ ++ G ARP+ DI++LVR+R Sbjct: 546 PLTTPRPDPGESLHAREGARIAARIREMVDGGQ----VVGRGASARPMHFGDITILVRNR 601 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 + DAL IP + + + + + LE +++ LL+ ++TP + L L + + Sbjct: 602 THVGAIEDALRDAGIPYLSAARGE-LLDHLEVRDLEALLRVLITPHDDLALAQVLRSPLF 660 Query: 622 GLNALDIETLNN-DEHAWDVVVEEFD-----------------GYRQIWRKRGVMPMLRA 663 + ++E L + W +E +R V +L Sbjct: 661 DVTHRELERLADAGPGPWHERLERLAPDLPPGSALKRAADKLTRWRAWSGALPVHDLLDR 720 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEH-ALVRWLSQHI-LEPDSN 721 + N+ A + +R T + + L+ A + +LV +L++ L S+ Sbjct: 721 IFLDGNVLARYQAGSRADRVPTVMASLIRFLELALEVDSGRYPSLVHFLARLRGLRDRSD 780 Query: 722 ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF-----YHDRHSFEA 776 A+ + + V+I+TIH SKGLE P+++L + + + Sbjct: 781 AAPDTPPVRGAEQRVRIMTIHASKGLEAPVIFLADAAAVPRDHKTYEPLVQWPAGEPRPR 840 Query: 777 VLDLNAAPESVDLAEAERLA--------EDLRLLYVALTRSVWHCSLGVAPLVRRRGDK- 827 ++ L + VD + LA E+ LLYVALTR+ + + + G Sbjct: 841 LMQLLPRSDDVDSLTRQALAHHQTAREREEANLLYVALTRARQVLIVSASARGKGDGGWY 900 Query: 828 -KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTA 886 + + A+ L G P A + + +A + A QV + Sbjct: 901 ARIREAIAPEAVSEELDTGVPGRFAEDGSWVHEAGTPPVAAEQA-VATPPAAQVPEGLNR 959 Query: 887 ELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP 946 L +R + + G A+ D DA Sbjct: 960 RLECAAPEREIAPS----------RAAAGYAEGEREDGDEDAR----------------- 992 Query: 947 RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETG 1006 G +H L E L + +L P L EW+ +A L E G Sbjct: 993 ---LRGVGIHRLLEWLAGGMRDSDAALIRRLAAELGLDPGHPDLGEWLGEA-RAVLAEPG 1048 Query: 1007 VSLSQLSARNKQV--EMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKG 1064 ++ A + E+ ++ + G Sbjct: 1049 LAAVFAPAPDCVDYCEVPLQYTAADGRT-----------------------------VYG 1079 Query: 1065 FIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL-R 1123 ID + R L+DYK++ + ++++A + Y LY + R Sbjct: 1080 IIDRLRVGRERILLVDYKTHRVADEAAARQVAEV--------YAAPMALYAEGVRRLWPG 1131 Query: 1124 HRIADYDYEHHF 1135 + H Sbjct: 1132 RTVEARLLFTHL 1143 >UniRef50_A4W0M7 ATP-dependent helicase/nuclease subunit A n=61 Tax=Streptococcus RepID=ADDA_STRS2 Length = 1227 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 192/1243 (15%), Positives = 392/1243 (31%), Gaps = 232/1243 (18%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 L+ ASAG+GKTF + L L R + +++L + TFT A EL+ RI Sbjct: 52 QNVLVSASAGSGKTFVMVQRILDKL---------KRGIGIDQLFISTFTVKAAGELKERI 102 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 ++E + ETTD L + L + +A + T+ F Q++ Sbjct: 103 EKKLNET----IAETTDMEL--------------RRHLSAQLADLTKADIGTMDSFTQKL 144 Query: 137 LNLNAFESGMLFEQQLIEDESL---LRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL 193 + + G+ + ++++DE+ L+ + + + + + + G + Sbjct: 145 VTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDENGAFRKLVRNFSGNRKD 204 Query: 194 LRDINRYLQGEAPVIKAPPPDDETL-ASRHAQIVARIDTVKQQWRD-------------- 238 + + ++ + L + + ++Q Sbjct: 205 NSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQMLEQGFKEKVLDKLYQAA 264 Query: 239 ---------------------AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEET 277 V E+ L+ +K + + + + Sbjct: 265 DFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGL 324 Query: 278 NSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAE--------PLSIRDLVIT 329 + P+ + ++ AG L + ++ +++ Sbjct: 325 TNANRPKDEHLIA---FKEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLR 381 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 + + + K + F D+ L E + + ++ M+DE+QD Sbjct: 382 DFVLDFSQAYLDVKIKEAAFEFGDIGHFAIRIL--EENADIRQFFQEKYHEVMVDEYQDN 439 Query: 390 DPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------YTL 443 + Q R+ + + ++GD KQ+IY FR AD + + A+ L Sbjct: 440 NHSQERMLDLLSN---GHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQSGKLILL 496 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 N+RS ++ + N +F++ D + EI + S + + + + + ++ Sbjct: 497 KENFRSQIEVLEATNAIFTRLMDRQVG-EIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYD 555 Query: 504 MEGESCGVGDYQST------MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVL 557 + + D + +V A +I DI++L Sbjct: 556 QQDSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE--------------GADFKDITLL 601 Query: 558 VRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALA 617 V+ R + IP V S ++LE ML L+ + P + L + L Sbjct: 602 VQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLK 661 Query: 618 TSMMGLNALDIETL----------------------------NNDEHAWDVVVEEFDGYR 649 + M + ++ + + + + +R Sbjct: 662 SPMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWR 721 Query: 650 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAG-TQLESEHALV 708 + + M+ + + + + + A G +R ++ + + T + + Sbjct: 722 AYAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFI 781 Query: 709 RWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--- 765 + + + A Q+ ++ VQ++TIHKSKGLE+ V+L I E Sbjct: 782 AMIDRALANDKDLADVQEFLP---QNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQ 838 Query: 766 AFYHDRHSFEAVLDLNAAPE--------------------SVDLAEAERLAEDLRLLYVA 805 + R + + L + ++ + L+E +RLLYVA Sbjct: 839 SVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVA 898 Query: 806 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDI 865 LTR+ L + +K D L + ++ + EA +D+ Sbjct: 899 LTRAEKKLYLV-GKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDL 957 Query: 866 AWQTAQTGDNQPWQV----------------NDVSTAELNAKTLQRLPGDNWRVTSYSGL 909 ++ D + D+ +E A+ L +L Y Sbjct: 958 HFKKVFVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAA 1017 Query: 910 Q-----QRGHGIAQDLMPRLDVDAAGVASVVEE------PTLTPHQFPRGASPGTFLHSL 958 + I + P L+ + V + P + GA G+ +H L Sbjct: 1018 IELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHEL 1077 Query: 959 FEDLDFTQPVDPNWVREKLELGGFESQWEPVL-TEWITAVLQAPLNETGVSLSQLSARNK 1017 + LD + V + VR LE E + + + I L ++ + Sbjct: 1078 MQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTDLGREILA----NTDKL 1133 Query: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYY 1077 E F A Q +L+G ID ++ Sbjct: 1134 HREAPF------------------------ASLQTDSVSQENFVLRGIIDGYLLYDDHIV 1169 Query: 1078 LLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 L DYK++ + + RY Q QLY AL + Sbjct: 1170 LFDYKTDKYDQPIQ-----------LSQRYQAQMQLYAEALKK 1201 >UniRef50_UPI0001C3224E exodeoxyribonuclease V, beta subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3224E Length = 1132 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 277/1038 (26%), Positives = 427/1038 (41%), Gaps = 88/1038 (8%) Query: 216 ETLASRHAQIVARIDTVKQQ-WRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 +A R +IV + + G + + ++ Sbjct: 104 AEVARRRDRIVRALAEFDAATITTIHSFCQEALGELGFAADLDRDHRFQEDVRDLAEEVV 163 Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 ++ F + + P L A S + Sbjct: 164 DDLYVRGFLTRPPHFRRAEAGRVALKAIDNPSAVLEP-----RAAGRSTYAGMRVGLATA 218 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394 R + R KR + FDD+L RL AL GE +AA + R+ +A++DEFQDTDP Q+ Sbjct: 219 ARAELDRRKRAAALVTFDDLLLRLRDALEGPDGEAVAARLHRRYRIALVDEFQDTDPDQW 278 Query: 395 RIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMV 454 I RR + T L+LIGDPKQA+Y+FRGAD+F Y+ A AH TL NWRS ++ Sbjct: 279 AIMRRAFA-ATGTTLVLIGDPKQAVYSFRGADVFAYLDAARAADAHPTLRVNWRSDQRLL 337 Query: 455 NSVNKLFSQTDDAFMFREIPFIPVKS---------AGKNQALRFVFKGETQPAMKMWLME 505 ++ + LF EI + V++ G A + + A + L Sbjct: 338 DAYDALFG--AARLGHDEIVYRQVRAAAANRAPRLHGAPGAAPLRIRVVPRDAPTVRLTS 395 Query: 506 GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGD--DARPVRASDISVLVRSRQE 563 G + ++ +A+ AA + L++G R E +G PV D++VLVR + Sbjct: 396 GGTASPASARAYVARDLAADVVALLESGARIETRDSDGRAVGHTPVGPGDVAVLVRRNVQ 455 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A +++ AL +P+V ++ SVF + A++ L LLQA+ PE R+A T+ +G Sbjct: 456 AREIKTALEAAGVPAV-VAGGGSVFASESARDWLVLLQALERPELLARARAAALTAFLGW 514 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 +A+ + E AWD + + + + R+ GV + + S+ ++ LL GGERR Sbjct: 515 SAVRVAA--AAEDAWDELQQRLHAWAGVMRRHGVAALTETITSSERVSVRLLEIVGGERR 572 Query: 684 LTDILHISELLQEAGTQLE-SEHALVRWLSQHIL--EPDSNASSQQMRLESDKHLVQIVT 740 LTD+ H+ ELL A + AL WL + I + D++A + RLESD VQ++T Sbjct: 573 LTDLRHVGELLHAASADEQLGITALAAWLRRRIEAGDRDADADDRARRLESDAEAVQVLT 632 Query: 741 IHKSKGLEYPLVWLPFITN----FRVQEQAFYHDRHSFEAV-------LDLNAAPESVDL 789 +H+SKGLE+P+V+ P++ + A +HD + A D Sbjct: 633 VHRSKGLEFPIVYCPYLWDPIWIPNEPLPATFHDAANGGARTIDVALDEDNQDYRRHQRQ 692 Query: 790 AEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKG---- 845 + E+L E+LRL YVALTR+ + A R G + A G + G Sbjct: 693 DKEEQLGEELRLAYVALTRARHQAVVWWAGSWSSRNSALGRLVFERDADGNVPATGSFTP 752 Query: 846 EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTS 905 + A + A IA + A D W L A T R WR TS Sbjct: 753 TDEAATDRFRQLAAAAAGAIAVERATVVDGVRWSPPQEPWTLLEAATFDRALDQRWRRTS 812 Query: 906 YSGLQQRG--------------HGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASP 951 ++ + A ++ L + + + P GA Sbjct: 813 FTTITAGAFEARVASELEEAPGADDAVEIPLLLPSPSGDDRATASAAVSLLSELPAGARI 872 Query: 952 GTFLHSLFEDLDFTQP----VDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNE--T 1005 GTF+HS+ E DF + L+ + L + A ++ PL E Sbjct: 873 GTFVHSVLEATDFAASDLDGELTAHIGAALDRRRIDVGDPAALAGGLRAAIETPLGELAG 932 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPL----------IASQLDTLIRQFDPLSAGCPPLEF 1055 G L L + EM F LP+ +A+ L + DPL+ L Sbjct: 933 GWRLRDLPRSARLDEMGFELPLVGGDAPTGELTLSAVAAVLRAHVAPDDPLAGYAERLSD 992 Query: 1056 ----MQVRGMLKGFIDLVFRHEGR--YYLLDYKSNWLGEDSS-----AYTQQAMAAAMQA 1104 +RG L G IDLV R Y ++DYK+N L Y A+A MQ Sbjct: 993 PALRSHLRGYLAGAIDLVARRAEGVPYAIVDYKTNRLAAAGEALTPWHYRPAALAIEMQR 1052 Query: 1105 HRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDK------EHPQQGIYTT 1158 Y LQ LY +ALHRYLR R+ D+ + ++Y FLRG+ + G++ Sbjct: 1053 SHYVLQALLYAVALHRYLRWRVEDHHPDRDRPLIVYAFLRGMAGSATPVLDGAPCGVFAW 1112 Query: 1159 RPNAGLIALMDEMFAGMT 1176 RP GL+ + ++F T Sbjct: 1113 RPPEGLVPALSDVFEEGT 1130 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 120/348 (34%), Gaps = 28/348 (8%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 +G ++EASAGTGKT+ IAAL R + + +++LL+VTFT AT ELR Sbjct: 16 PEGVTVLEASAGTGKTYAIAALATRYVAE---------GIPLDQLLIVTFTRMATGELRD 66 Query: 75 RIRSNIHELRIACLRETT------DNPLYERLLE-EIDDKAQAAQWLLLAERQMDEAAVF 127 R+R + R A + + L + A+ ++ A + D A + Sbjct: 67 RVRHRLASTREALDAIAAGAAPGVYDEVVRLLASGTSAEVARRRDRIVRALAEFDAATIT 126 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV----- 182 TIH FCQ L F + + + + ED L + D + R P + Sbjct: 127 TIHSFCQEALGELGFAADLDRDHRFQEDVRDLAEEVVDDLYVRGFLTRPPHFRRAEAGRV 186 Query: 183 VFETWKGPQALL--RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 + P A+L R R V A E + A + D + + RDA+ Sbjct: 187 ALKAIDNPSAVLEPRAAGRSTYAGMRVGLATAARAELDRRKRAAALVTFDDLLLRLRDAL 246 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 D ++ + RR WA +L + D +A Sbjct: 247 EGPDGEAVAARLHRRYRIALVDEFQDTDPDQWAIMRRAFAATGTTLV-----LIGDPKQA 301 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 +F +D A V R+ + + Sbjct: 302 VYSFRGADVFAYLDAARAADAHPTLRVNWRSDQRLLDAYDALFGAARL 349 >UniRef50_P96920 Exodeoxyribonuclease V beta chain n=28 Tax=Actinomycetales RepID=EX5B_MYCTU Length = 1094 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 245/905 (27%), Positives = 374/905 (41%), Gaps = 76/905 (8%) Query: 324 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMI 383 + V R AE+ E + R K R GF+D+L RL +AL + +R R+ + ++ Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA-RDRMRERWRIVLV 261 Query: 384 DEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTL 443 DEFQDTDP Q+R+ R + +AL+LIGDPKQAIY FRG DI TY+KA A YTL Sbjct: 262 DEFQDTDPMQWRVLERAF--SRHSALILIGDPKQAIYGFRGGDIHTYLKAAGTADARYTL 319 Query: 444 DTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503 NWRS +V S+ QT I V+ + A + ++ + Sbjct: 320 GVNWRSDRALVESL-----QTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRV 374 Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 ++ + G + I D L A RPV A+DI+V+V ++ Sbjct: 375 VKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAADIAVIVEHHKD 434 Query: 564 AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 A R+AL IP++Y + D VF + A++ L LL+A P+R +R+A T G Sbjct: 435 ARACRNALAEAGIPAIYTGDTD-VFASQAAKDWLCLLEAFDAPQRSGLVRAAACTMFFGE 493 Query: 624 NALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 A + + D V + R RGV + +A + +L+ GGER Sbjct: 494 TAESLA--AEGDALTDRVAGTLREWADHARHRGVAAVFQAA-QLAGMGRRVLSQRGGERD 550 Query: 684 LTDILHISELLQEAGTQLE-SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIH 742 LTD+ HI++LL EA + L WL + + RL+SD VQI+T+ Sbjct: 551 LTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAG-AGPPEHNRRLDSDAAAVQIMTVF 609 Query: 743 KSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLA------ 796 +KGL++P+V+LPF N V+ L + E L Sbjct: 610 VAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAH 669 Query: 797 EDLRLLYVALTRSVWHCSLGVAPL---------VRRRGDKKGDTDVHQSALGRLLQKGEP 847 ++LRL YVALTR+ AP RG + G + V R+ + Sbjct: 670 DNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAW 729 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 A ++ + V + R WR TSYS Sbjct: 730 AVFAQWEAAGGPSVEE-------SVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYS 782 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQF-------PRGASPGTFLHSLFE 960 L + + P A V V + P GAS G+ +H++ E Sbjct: 783 DLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLE 842 Query: 961 DLDFTQPVDPNWVREKLELGG-------FESQWEPVLTEWITAVLQAPLN--ETGVSLSQ 1011 D P + ++ +Q P L + + PL ++L Q Sbjct: 843 TADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQ 902 Query: 1012 LSARNKQVEMEFYLPISEPLIA--------SQLDTLIRQFDPLSAGCPP---------LE 1054 + R++ E++F +P++ + + + L+ P P L Sbjct: 903 IGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLG 962 Query: 1055 FMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQL 1113 +RG L G ID+V R G RY ++DYK+N LG+ ++ Y + + AM Y LQ L Sbjct: 963 DQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALL 1022 Query: 1114 YTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHP------QQGIYTTRPNAGLIAL 1167 Y + LHR+LR R DY H GGV+YLF+RG+ G++T P L+ Sbjct: 1023 YVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVA 1082 Query: 1168 MDEMF 1172 + ++ Sbjct: 1083 LSDLL 1087 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 15/266 (5%) Query: 2 SDVAETLDPLRLPLQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 D E L PL P +G ++EASAGTGKTF +A L R L T++E+L Sbjct: 1 MDRFELLGPL--PREGTTTVLEASAGTGKTFALAGLVTRYLAETAA--------TLDEML 50 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDN-PLYERLLE-EIDDKAQAAQWLLLAE 118 ++TF AA+ ELR R+R I E A + + L E LL ++AQ L A Sbjct: 51 LITFNRAASRELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDAL 110 Query: 119 RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRE 178 D A + T H FC +L + +L E + L + D + + + Sbjct: 111 ANFDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETD 170 Query: 179 IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL-ASRHAQIVARIDTVKQQ-W 236 E A++ D L+ P + A ++ R ++ Q + Sbjct: 171 PELTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGF 230 Query: 237 RDAVGELDALIESSGIDRRKFNRSNQ 262 D + L +E++ R R Sbjct: 231 NDLLIRLATALEAADSPARDRMRERW 256 >UniRef50_A8SI11 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SI11_9FIRM Length = 1228 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 233/1290 (18%), Positives = 390/1290 (30%), Gaps = 229/1290 (17%) Query: 7 TLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66 G L+ A+AG+GKT + ++L+ P+ + LL+VTFT Sbjct: 9 AQQAAIADRGGALLVSAAAGSGKTAVLTERAVQLITD------PEHPVNADRLLIVTFTN 62 Query: 67 AATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAV 126 AA AELR RI + L + A + Sbjct: 63 AAAAELRARIGQALLHRSQLQPGNAM---------------------LRRQRMLLQRAPI 101 Query: 127 FTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVF 184 TI FC +L+ + + + + LLR A A+ ++ Sbjct: 102 CTIDAFCLNLLHKHFQALDIPPDFAPADPGTVQLLRGAALAETLENAYRDPDFCAFADLY 161 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQ-------------------I 225 + + I + + DE LA + Sbjct: 162 GKGRTDKPAGDAILQIYDFLRALPDYDRKLDEFLAPYEQENGFADTCWHDLLLAEAARCA 221 Query: 226 VARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAK-----------WIDKISAWAE 274 A + +K D + D + + + R+ ++K +A Sbjct: 222 KAARELLKAALADCHADFDQELAVAEEKKTPSARAKAQATVAEKYEEAGTRLEKAAALFA 281 Query: 275 EETNSYQLPES-----------LEKFSQRFLEDRTK----------AGGETPRHPLFEAI 313 + + L L+ K LFE + Sbjct: 282 QAEQLAATGQWDPLYDLLTPYVLGMEEAPGLKGMKKRLGGDHKAEIKTRSDEAAALFEQM 341 Query: 314 DQLL----------AEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR 363 QL+ + R + A+ + KR R L F D LR Sbjct: 342 TQLICCSEAEAETDRQITLPRLRALFAAVRDFDARFTARKRERKLLEFSDFEHLALRLLR 401 Query: 364 SESG--EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421 + G L IR + M+DE+QDT+ Q ++R + L L+GD KQ+IY Sbjct: 402 TPEGKPTPLCENIRQDYAAVMVDEYQDTNALQDALYRCLAAPA-GDNLFLVGDLKQSIYR 460 Query: 422 FRGADIFTYMKARSEVH-------------------AHYTLDTNWRSAPGMVNSVNKLFS 462 FR A+ + + A LD N+RSAP +V +N F Sbjct: 461 FRQAEPGIFRQKLDSWPLLPGAKARPRPPEGTPGTDALLALDANFRSAPQVVAGINYFFE 520 Query: 463 QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVC 522 Q + + G Q L GE Q ++++ + + T A Sbjct: 521 QLMTPELGD-------TAYGDGQRLVCGAPGEYQGSVEVQFLPDDET------ETDAGWI 567 Query: 523 AAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 A +I + AG+ + G RPVR D VL+ +R E +ALT IP VY Sbjct: 568 AERIAQLVSAGEP----VREGSTTRPVRYEDCCVLLAARTEFPAYVEALTARGIP-VYAD 622 Query: 583 NRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV-- 640 R+++ + ++ LL+ + P ++ L +A+ M G D+ L Sbjct: 623 ARENLMLAPHIRPLIALLKVIDDPSQDIYLAAAMLGPMFGFTEDDLVRLRARSRQVQAEP 682 Query: 641 -------------------------------VVEEFDGYRQIWRKRGVMPMLRALMSARN 669 RQ+ R +L + ++ Sbjct: 683 DKKPARISLYGALLLALEDPADDPFTEKVKDFYAHLTALRQMARSAPAEQLLEEIFASTG 742 Query: 670 IAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRL 729 L G RR D + A + ALVR + + + Sbjct: 743 YLAALGVLENGARRREDARRFASFC--ATSGAGGISALVRAIDAAAQAGSTGQD--TVPS 798 Query: 730 ESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA-------------FYHDRHSFEA 776 V I+TIH+SKGL++P+V++ + E Sbjct: 799 GVHPGCVSIMTIHRSKGLQFPVVFVGDTARKFNASDIRQPVLVHRTFGAGLRLRPENGEG 858 Query: 777 VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVA-PLVRRRGDKKGDTDVHQ 835 A ++ E +E +RLLYVALTR+ L V + Sbjct: 859 AYKTAAYTALANVHARELRSEQMRLLYVALTRAQDKLILTVPMSSGKSAKPFAKAAAFLA 918 Query: 836 SALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAEL--NAKTL 893 + G L + A LR + D + Q + + Q V + +A L Sbjct: 919 AGAGATLHQQANSFADWLRAALLVHPDGGMLRQLSGNRELLFVQTESVMAIRVCDDAVQL 978 Query: 894 QRLPGDNWRVTSYS---GLQQRGHGIAQDLMPRLDVDAAG------------VASVVEEP 938 P + L ++ P + + +E P Sbjct: 979 SEKPDADTENEVPETDLALVEKLRQGFAWQYPAAALAQVPAKVSVTSIVHKAEQTTLERP 1038 Query: 939 TLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-------PNWVREKLELGGFESQWEPVLT 991 A GT LH+ E DF + + + + P + Sbjct: 1039 GFLSKDGLTAAEMGTALHAFLEHADFARLAAAKAAGTLDEAIPAERDRQVAVQLTAPEIA 1098 Query: 992 EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP 1051 E + AV E+ +A+ E+ F + + + + + L A Sbjct: 1099 EKLDAVCIRRFVESEAFAKICAAQQVLRELPFITALPAGAVLAA-----QGHEELPAAAD 1153 Query: 1052 PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQY 1111 + +++G DLV + LLDYK++ +S Y Q Sbjct: 1154 A------QVLVQGIADLVLVYPDHLELLDYKTDRRKAESDFLRA-----------YRAQL 1196 Query: 1112 QLYTLALHRYLRHRIADY--DYEHHFGGVI 1139 LY +A+ + + Y Y G +I Sbjct: 1197 NLYAIAIEKRFAPKKVTYKGIYSFALGKLI 1226 >UniRef50_Q2RNR7 UvrD/REP helicase n=2 Tax=Rhodospirillum RepID=Q2RNR7_RHORT Length = 1187 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 217/1211 (17%), Positives = 383/1211 (31%), Gaps = 188/1211 (15%) Query: 5 AETLDPL-----RLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEL 59 A+ LDP + ASAGTGKT + LRLLL + L Sbjct: 15 ADPLDPAKPQRRAADPLASAWVAASAGTGKTKVLTDRVLRLLL---------AGTPPQRL 65 Query: 60 LVVTFTEAATAELRGRIRSNIHELRIACLRETTD--NPLYERLLEEIDDKA----QAAQW 113 L +TFT+AA AE+ R+ + + L L E + +A + Sbjct: 66 LCLTFTKAAAAEMANRVSAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRL 125 Query: 114 LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRH 171 + TIHGFCQ +L E+G+ ++++D L A R Sbjct: 126 FAQVLDCPGGLRIQTIHGFCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVLRAA 185 Query: 172 CYPLPRE------IAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQI 225 E A + T ++ ++ L G+ + A + I Sbjct: 186 RQAEDGEGGDPALAAALAVVTGHLSESRFDEVMAALGGQRGRLLAALDHFGGAEALGKAI 245 Query: 226 VARIDTVKQQWRD---AVGELDALIESSGIDRRKF-------NRSNQAKWIDKISAWAEE 275 + + A G + + + + I + + Sbjct: 246 RDSLGLAADDTPETVLADGCAEGAFDGPSLRAAAAALIAGGKTDQERGLRIAAFVSETDP 305 Query: 276 ETNSYQLPESLEKFSQRFLEDRTKAGGETP---------------RHPLFEAIDQLLAEP 320 + F + E K P + ++ ++L A Sbjct: 306 AIREGLFWTYIGAFLTKTDEKPVKTLCTKPVEKAHPGTLESLEAEQQRIWTLRERLRAAT 365 Query: 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSE-SGEVLAAAIRTRFP 379 + + + + + R KR G + ++D++ L + + + + Sbjct: 366 TAQASEALLTLVGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAWVLFKLDGGLD 425 Query: 380 VAMIDEFQDTDPQQYRIFRRIWHH----------QPETALLLIGDPKQAIYAFRGADIFT 429 ++DE QDT P Q+ I + + +GD KQ+IY F+GAD Sbjct: 426 HLLVDEAQDTSPDQWAIASALAGEFFTDSARWDGTRPRTVFAVGDRKQSIYGFQGADPKA 485 Query: 430 YMKARSEVH----------AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFM---------- 469 + R H A L+ ++RS ++ +VN +F++ Sbjct: 486 FEDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADSGV 545 Query: 470 FREIPFIPVK-SAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRD 528 +I + AG L + + W E G+ ++ +A+ A +I+ Sbjct: 546 AEDITHHAFRKDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVAQRIKT 605 Query: 529 WLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSV 587 G+ E RP+R DI VLVR R ++ AL ++ V +R ++ Sbjct: 606 MTSGGELLE------SQGRPIRPGDILVLVRRRGGFEEELVSALKSAKV-EVAGVDRMTL 658 Query: 588 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN----NDEHAWDVV-- 641 + L +++ L +A++ PE + TL S L ++GL+ + TL DE WD + Sbjct: 659 TDQLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDRLRP 718 Query: 642 -----------VEEFDGYRQIWRKRGVMPMLRALMS---ARNIAENLLATAGGERRLTDI 687 +E + R + ++ E + + Sbjct: 719 HAGAENAYGKAMEIIEPLRDRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDPIDEF 778 Query: 688 LHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 L ++ L + + WL + +E + + V+I+T+H SKGL Sbjct: 779 LALT--LAHERVGPPALQGFLSWLEKGTVEIKRDLDQGAL------DAVRIMTVHGSKGL 830 Query: 748 EYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEA----------ERLAE 797 + P+V+LP A P D A ER E Sbjct: 831 QAPVVFLPDTLAKPTGNDLLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDRE 890 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI 857 RLLYVA+TR+ + ++R + +H + L L Sbjct: 891 YRRLLYVAMTRAADRLYICGWETLKRPAEDCWYALIHDA-----LAASAQTVEVPLLDAT 945 Query: 858 EALCDDDI-AWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 AL D ++ Q G P + E A T Sbjct: 946 GALKDTEVLRLTCPQEGSPSPSDSAAPADEEGEAPAAWAALPPPLEPT-----------P 994 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVRE 975 ++ L P D S ++ PR G +H L + L D R Sbjct: 995 SRPLAPSHVGDEGAARSPLDGRGD-----PRRFLRGRLIHKLLQLLPELPDEDRGPAARR 1049 Query: 976 KLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035 L + + E + ++A + A L++ Sbjct: 1050 WLSRPAWALEAEEI--GALSAEVLAVLDDPAFR--------------------------- 1080 Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095 F P S PL + ++ G +D + + ++DYK+N + Sbjct: 1081 -----AVFAPGSRAEVPLVGLVGNHVVSGQVDRLAVTDDEVLIVDYKTNRPPPRAVDLVD 1135 Query: 1096 QAMAAAMQAHR 1106 A M A+R Sbjct: 1136 IAYIRQMAAYR 1146 >UniRef50_UPI000196B4E2 hypothetical protein CATMIT_00994 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B4E2 Length = 1181 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 199/1272 (15%), Positives = 395/1272 (31%), Gaps = 222/1272 (17%) Query: 1 MSDVAE--TLDPLRLPLQG-ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVE 57 M + + + L+G L+ A AG+GKT + A + L++ +++ Sbjct: 1 MMRMPKYNKEQQAAIDLRGKTILVSAPAGSGKTRILVARLISLIVNDH--------YSMD 52 Query: 58 ELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLA 117 + LV+TFT+AA E++ R+ ++HE +A E T + + Sbjct: 53 QFLVLTFTKAAGNEMKQRLNVSLHEEALADHDEET------------------LRHIQEQ 94 Query: 118 ERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPR 177 + + A + T FC+ +L + G++ ++ L++ Q + Sbjct: 95 IQLLPHAYITTFDSFCKTLLEKYGYLIGVMPGFKVNPSPDLIKDQVLDQCLEKWVEDPDF 154 Query: 178 EIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWR 237 + T L + + + + D+ + ++R + Sbjct: 155 KDYAYRHNTKNNFDDLKKTLIDFQNITNSFVDFHRFLDQVHERYYDFNLSRNMPILDGMT 214 Query: 238 DAVGE-----------LDALIESSGIDR-----RKFNRSNQAKWIDKISAWAEEETNSYQ 281 + L E I + A + + + N Sbjct: 215 QLYRDCCLKSLSAYNILYRFCEKHDITYFFETVENAKKPAPATALYDYYSDLYDALNRPL 274 Query: 282 LPESLEKFSQRFLE-------------------DRTKAGGETPRHPLF--------EAID 314 ++L + LE + K P L E Sbjct: 275 TFDTLNSLLSQKLEMANIKWSELGVDDSVKKQYTKLKGNVTDPLSKLKKFLSFTSTEEFK 334 Query: 315 QLLAEPLSIRDLVITR--ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAA 372 + L + ++ + L + + + K+ R EL F D+ L+ + Sbjct: 335 KYLDYSFKDIEFLLGKDGLLDQFNKNYSDAKKARNELDFHDLEEYATRLLQ--PDLPVVE 392 Query: 373 AIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK 432 + M+DE+QDT+ Q + +I ++ + ++GD KQ+IY FR AD + Sbjct: 393 RLNHTLKEIMVDEYQDTNEMQENLVLKIANYDEHIPMFMVGDMKQSIYRFRQADPSIFQY 452 Query: 433 ARSEVHA-----------HYTLDTNWRSAPGMVNSVNKLFSQTDD------AFMFREIPF 475 L N+RS +++SVN +F D ++ + Sbjct: 453 KFDTFTKLEEMTEYDTNIRIDLKYNYRSEKVVLDSVNYIFDCIMDSSVGGLEYIHGDNAI 512 Query: 476 IPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQR 535 + K L + K + + ++ A + A +I Sbjct: 513 LRYDFDAKGTTLPELEKNH-DFDTDILISLYKNQEEYTKSEVEAHMVAQKIISM------ 565 Query: 536 GEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQE 595 + + D +VL+R+ E + IP+ ++ +FE+ E Sbjct: 566 --------KKLKDYKYHDFAVLMRATTEFITYKKVFERYHIPA-NITLSSGLFESNEVIS 616 Query: 596 MLWLLQAVMTPERENTLRSALATSMM--GLNALDIETLNNDEHAW------------DVV 641 M+ LL+A++ P + + S L + + ++ + + + Sbjct: 617 MMTLLKALVNPYDDIAMLSVLHNNFLFSHFTENELLDIRDADDPLYINLTHHTNSKVLHF 676 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 +E FD R L+ + + GE+R ++ + E + Sbjct: 677 LEVFDDLRNTAMTSSPYETLKKCLKETGYQAFVSQLMNGEQRSANLDILLETFRTNEEY- 735 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLESDK-HLVQIVTIHKSKGLEYPLVWLPFITNF 760 +L ++ DS++S + SD+ V+ +TIHKSKGL++P+V++ + Sbjct: 736 -------PYLKDYLELLDSSSSQAPGFIASDENDAVEFMTIHKSKGLQFPVVFVSAMQKK 788 Query: 761 RVQEQ-----AFYHDRHSFEAVLDLNAAP--------------ESVDLAEAERLAEDLRL 801 +V L +P E + E++R+ Sbjct: 789 FNSSDENAEIIISQHDGVAGSVCKLEESPFGNIVCKYEHPYSKMLKMFIRQETVNEEMRI 848 Query: 802 LYVALTRSVWHCSLGVAPLVRRR----------GDKKGDTDVHQSALGRLLQKGEPQDAA 851 LYVALTR+ L D Q + L + + Sbjct: 849 LYVALTRAEKKLILTGTIKDEEEIISIARQVQANDTDPTLKKGQGVVYNLAMRSTNNYLS 908 Query: 852 GLRTCIEALCD--DDIAW---QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW----R 902 + + D +DI + ++ + D+ R Sbjct: 909 WVLMALLRHKDFQEDIKILIPEIRPYLSLDRSSFKELENKDTQLARFHCTILDSSETVQR 968 Query: 903 VTSYSGLQ-----QRGHGIAQDLMPRLDVDAAGVASVVEE--PTLTPHQFPR------GA 949 + Y+ ++ + P + + +EE T F Sbjct: 969 IPPYAKIKIENQYRAYKKYYDFEYPYPVEPRSIAVTSMEEMKSDDTHFDFSNEGTRYLAT 1028 Query: 950 SPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSL 1009 GT +H+L +F + ++ F+ + VL Sbjct: 1029 DRGTLVHNLLSYFNFKEDDPEELIQSLYTNQMFDEEGLSVLKN----------------- 1071 Query: 1010 SQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLV 1069 YLP I S LI+ D + + ++ G DLV Sbjct: 1072 --------------YLPHINDFINSDTYQLIKDADQIYQEKQFRYKDENGLIINGIFDLV 1117 Query: 1070 FRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADY 1129 F + + Y+LDYK++ + +D+S + + Q Y+ L + Sbjct: 1118 FIKDNKVYVLDYKTDRVSKDNS--------EEVLKELHRTQLSYYSKVLKEVFHTDVQPI 1169 Query: 1130 DYEHHFGGVIYL 1141 Y H IYL Sbjct: 1170 VYYLHINKAIYL 1181 >UniRef50_A6CDV1 UvrD/REP helicase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDV1_9PLAN Length = 1171 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 220/1173 (18%), Positives = 393/1173 (33%), Gaps = 140/1173 (11%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A AG GKTF + +L+L+ ++ +TFTE A E+R RIR Sbjct: 21 SIALSAGAGCGKTFVLTQRFLKLIEPGAPPDRLSH------IVAITFTERAAREMRDRIR 74 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + C E ++ R +D A + TIH FC +L Sbjct: 75 ETCLDQLKNCPPEEVNH-------------------WQAVIRGLDSARISTIHSFCTSIL 115 Query: 138 NLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETW--KGPQAL 193 +A + + L+E + + + Q+V+ K + L Sbjct: 116 RSHAVSARLDPHFGLLEQGTSDTFLRKVVHEAVHELLKQENADCIQMVYRFGLEKTYELL 175 Query: 194 LRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALI----ES 249 + + + + E + P+ R I + ++ L L Sbjct: 176 ISLVPQQFRLEFDEFRELTPEQLAGRMRDFWEQNYIPMQLAEIAESDATLHLLRLMNSHE 235 Query: 250 SGIDRRKFNRSNQAKWIDKISAWA-----EEETNSYQLPESLEKFSQRFLED-----RTK 299 + + I ++ A E + +++ +D + + Sbjct: 236 PSNPKLRQRFQTLKSRIPELIDGAPQMRGELLGTLIDHAKIQGGGTKKDWDDVSIYEQIR 295 Query: 300 AGGETPRHPLFEAIDQLLAEPL-----SIRDLVITRALAEIRETVAREKRRRGELGFDDM 354 G + R L + L +P + LV+ R + K +G L FDD+ Sbjct: 296 DGFKELRETLKPVYETLSPDPAGFLAAAEFSLVVLRVSEYAAKCYQESKAEKGLLDFDDL 355 Query: 355 LSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQP-ETALLLIG 413 L + R + M+DEFQDTDP Q I R + + L L+G Sbjct: 356 LLQTRDLFRRDPNA--RQRAAAGIHYLMVDEFQDTDPVQSEIVRALCGKELLTGKLFLVG 413 Query: 414 DPKQAIYAFRGADIFTYMKARSEVHA--HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 D KQ+IY FR AD + + R E+ L TN+RS P ++N N LF+ + Sbjct: 414 DAKQSIYRFRRADPEVFHQLRQEIPEKGRLPLSTNFRSQPAILNFTNCLFASAMAHYYES 473 Query: 472 EIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQ 531 PF + + F+F P +K+ + T A AA+IR L+ Sbjct: 474 LTPF-DQQQHSPTPGIEFLFASPDDPDIKL---------ADAIRETEADWIAARIRQLLE 523 Query: 532 AGQRG---EALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVF 588 + + R V DI +L RS + AL + YL + + Sbjct: 524 DETPRIWSKNPQSGERELRRVEPGDICILFRSLSSVSLYEKALQEHNLDY-YLVGGRAFY 582 Query: 589 ETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEE---- 644 E ++ L Q + + + E +L L + L+ I + + ++ Sbjct: 583 AQQEIYDLSNLCQYLDSSDDELSLLGLLRSPFFSLSDDTIYAITRHAESLTAAMQVAPPD 642 Query: 645 ----------------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL 688 R + ++ +L + LL G+R+L ++ Sbjct: 643 HVRPEQKRQVRYAQAVLQELRTKKDRLSLVELLNLALERTGYDAALLNEFLGDRKLANLR 702 Query: 689 HISELLQEAGTQLESEHALVRWLSQHILE-PDSNASSQQMRLESDKHLVQIVTIHKSKGL 747 + EL + L ++ + + + L +++++TIH+SKGL Sbjct: 703 KLIELARNFEAS--GLFTLKDFVQRIRDSILEESKEELAATLPETSDVIRLMTIHQSKGL 760 Query: 748 EYPLVWLPFITNFRV--QEQAFYHDRHSFEAVLDLN--------AAPESVDLAEAERLAE 797 E+P+V + + + F H L A + + E Sbjct: 761 EFPVVIVADMDRRSQGASKDPFLHPEWGALLNLPAERGVTPENFAFKMHRAIEQNADEDE 820 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQ-SALGRLLQKGEPQDAAGLRTC 856 +RLLYVA+TR+ + L RR + + L L +P Sbjct: 821 TVRLLYVAVTRAADYLILSAGLPYDRRVQSPWMKLLSRHFDLSTGLPTLDPYLGHFTMGN 880 Query: 857 IEALCDDDIAW--QTAQTGDNQPWQVNDVSTAELNAKTLQRLP-GDNWRVTSYSGLQQRG 913 ++ +I QT ++ ++ ++ A Q P G T ++ + R Sbjct: 881 VQQDQIPEIRVHLNRPQTATKPAKKIKELKPSQFWAALEQGSPGGYPETFTVFAPQKNRQ 940 Query: 914 HGIAQDLMPRLDV--DAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPN 971 + + D T GT HS+ E LD +P + Sbjct: 941 SHFSVSHLEVADALIQELPEPQYQRLSTADLLNADEATQLGTLTHSVIERLDPLKPEQSD 1000 Query: 972 WVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPL 1031 + E L L L I + A E+ + + +AR E+EF L + Sbjct: 1001 RIVE-LVLFDQPQVAGDKLKPLIQQQIAA-WYESEICSALKAARVHYRELEFLLRL---- 1054 Query: 1032 IASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG-RYYLLDYKSNWLGEDS 1090 P + + G ID V++ + R+ +LDYK+ G Sbjct: 1055 -------------------PATSDKESAVTVTGMIDAVYQTDDQRWVVLDYKT---GARL 1092 Query: 1091 SAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 + + + + Y+ Q +YTLA+ + + Sbjct: 1093 AQLADEELISE-----YEFQLGVYTLAVEQLIG 1120 >UniRef50_D2MLK1 DNA helicase, UvrD/REP type n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLK1_9BACT Length = 1180 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 193/1219 (15%), Positives = 385/1219 (31%), Gaps = 211/1219 (17%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M D L + + A AG+GKT + YL +L + + ++ Sbjct: 1 MQFTPSQQDALNIE--KHVCVTAGAGSGKTTVLVERYLEILRKGD--------VGPQNIV 50 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +TFTE A AE++ R+ ++E R+ Q Sbjct: 51 AITFTEKAAAEMKERVIERLNEAGNITDRDN-------------------------LLDQ 85 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIE--DESLLRYQACADFW---RRHCYPL 175 M A + TIH FC R+L F + + +++ D+ LL + + + Sbjct: 86 MSSAYISTIHAFCSRILREFPFLAKVPANFSILQGIDQKLLLQETLKETLNNIATNAEDE 145 Query: 176 PREIAQVVFETWKGPQALL---------RDINRYLQGEAPVIKAPPPDDETLASR-HAQI 225 R + + + G + L+ RDI L+ E + P L R ++ Sbjct: 146 HRPELTHLLQRYGGQKKLVEIFSTMIDKRDIIAKLRQEIYNDRNSPEIHADLEQRVLKKL 205 Query: 226 VARID--------------TVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISA 271 ++ ID + + + L D K + Sbjct: 206 MSAIDVPEFIRCLNAVSQVALGRNLENVEDLTQQLEAQYATDPNSPEVPKLLKQFIDLIT 265 Query: 272 WAEEETNSYQLPESLEKFSQ-----RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRD- 325 + + FL K P D+ + Sbjct: 266 IKSGAIAKSAFIGTKTDITGIETEINFLVSTVKKIKILPDLEKRVETDRTGDAETDNSED 325 Query: 326 ----------------LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEV 369 + + K +G L F+D+ + LR E Sbjct: 326 KTDTVETDDDFLLSTVHDLLTLYTRVLSDYDEAKLSQGTLDFNDLQLKTRDLLRD--NEK 383 Query: 370 LAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFT 429 + + R M+DE+QDT+ QY + + + L ++GDPKQ+IY FR AD+ Sbjct: 384 IRKELVDRHQYYMVDEYQDTNELQYELVMLLTNELKSANLFIVGDPKQSIYGFRDADVRV 443 Query: 430 YMKARSEV----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQ 485 + K + ++ +L N+RS ++ VN FS E + + Sbjct: 444 FNKTKQKIVREDGKRISLTENFRSLRDVIGFVNYFFSHLMGPGNENEF-------EVEYE 496 Query: 486 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWL-QAGQRGEALLMNGD 544 AL +T A+++ + + +Y+ + A +I + + A + +G Sbjct: 497 ALTQARHAKTNGAIEILIGQDGDPSANEYK-----LIAQRIENMITDAAETIRVRDKDGK 551 Query: 545 -DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAV 603 RP++ DI++L+R+R + AL IP + + ++ E ++ L + Sbjct: 552 LSERPIQYDDIAILIRARTHLPDIEHALLEAGIPYL-TTGGIGFYQRQEIYDIWNYLNFL 610 Query: 604 MTPERE-NTLRSALATSMMGLNALDIETL-------NNDEHAWDV-------------VV 642 P +L + L + G++ ++ + + WD + Sbjct: 611 NNPSDSNISLAAILRSPAFGISDAELYEISLQKETKQEKKSFWDKTLDYQGCTEQLRCAI 670 Query: 643 EEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLE 702 + + + R+ V ++ +++ + L G++R + + +L + E Sbjct: 671 DTLKTHIEFARRMPVNRLVGTIVNETGLIGTLRTGKQGKQRWANYQKLLDLARNFDGD-E 729 Query: 703 SEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRV 762 + L ++ + Q +++ VQI+T+H +KG ++P+V LP + Sbjct: 730 NRQILPDFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVMLPRLDKKGQ 789 Query: 763 QEQAFYHDRHSFEAVLDLNAAPES-----------VDLAEAERLAEDLRLLYVALTRSVW 811 +Q + D L+ A + A + +AE RL YV TR+ Sbjct: 790 TDQEPFIDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKRLFYVGATRAED 849 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 L + + + +G + + D Q Sbjct: 850 RLILSGTLRDNSKPQQMLEWLYTHLEIGEADNLLNLDVKQDVYKNGSTI-DQHFRLQIPI 908 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT------SYSGLQQRGHGIAQDLMPRLD 925 + D ++ E + T S L + + + Sbjct: 909 SRTLTDTTDTDAASDETMPIEFPEDLPSALQPTEVPTALSAPELANYARCPLRYQLENVL 968 Query: 926 VDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW-VREKLELGGFES 984 + + + L+ L + + + + + +++ E + Sbjct: 969 RIPSIKQAEPDSDENEMKN--------AILYVLMQIREPSDTQNLDTRIQQAFENFPEIA 1020 Query: 985 QWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFD 1044 E L + I + L + L +T + S+ Sbjct: 1021 DAETELRKHINSFLDSELGQTALRASETETNQHI-------------------------- 1054 Query: 1045 PLSAGCPPLEFMQVRG-MLKGFIDLVFRHEGRYY--LLDYKSNWLGEDSSAYTQQAMAAA 1101 + V G +L G ID +FR E ++ ++ Y A + Sbjct: 1055 ----------YADVDGHILDGRIDRLFRDETGHWQAII-Y------GTGDAQHPTVCSPE 1097 Query: 1102 MQAHRYDLQYQLYTLALHR 1120 M +LY+L +HR Sbjct: 1098 M---------ELYSLLIHR 1107 >UniRef50_C5RQN8 Recombination helicase AddA n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQN8_CLOCL Length = 1287 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 155/929 (16%), Positives = 322/929 (34%), Gaps = 144/929 (15%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 L+ A+AG+GKT + + L+ + +++LLVVTFT+AA AE+R RI Sbjct: 23 NLLVAAAAGSGKTAVLVERIIELV------SNKEAKTDIDKLLVVTFTKAAAAEMRERIG 76 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + + E + E D+ L +++A + T+H FCQ ++ Sbjct: 77 NALAE----KISENPDD-----------------THLHRQLVLLNKANITTMHSFCQSLI 115 Query: 138 NLNAFESGMLFEQQLIEDESL---------------LRYQACADFWRRHCY-----PLPR 177 + + ++ + + + + ++R + Sbjct: 116 KNYFHKLDIDPAFRIGDATEIELLLLETIEEVLEECYKEENITIGFQRLVEGYGKNEDDK 175 Query: 178 EIAQVVFETWKG------PQALLRDINRYLQGEAPV------IKAPPPDDETLASRHAQI 225 + V+ ++ P++ L + + + E + ++ Sbjct: 176 SVQDVIIRLYRFVMAMPWPESYLEKVVEAYRAFEETSPFKTSFENSEFSKEICKIVYDKV 235 Query: 226 VARIDTVKQQWRDAVGE---------LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE 276 + T++ R+ + L + +A +S Sbjct: 236 EPDLKTLRILIREVEAQESINPNLPLLIKEEAYLSNIVKNSKEGYEALRNILMSVEFGRL 295 Query: 277 TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLF-EAIDQLLAEP--LSIRDLVITRALA 333 + K + + D+ K + F + I+ + E ++ ++ L Sbjct: 296 STKKTSILIETKEQMKNVRDQYKETISSIIEDFFYDDIEAINEEFRFIAPIISILKEILI 355 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSES------GEVLAAAIRTRFPVAMIDEFQ 387 + T +KR +G + F+DM + L +++ +A IR +F MIDE+Q Sbjct: 356 SVIHTFKEKKRSKGIIDFNDMEHYVLELLCTKNDKDETVPTEVALEIRRKFEEIMIDEYQ 415 Query: 388 DTDPQQYRIFRRIWHHQPE-TALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------A 439 D+ Q I I + ++GD KQ+IY FR A +++ Sbjct: 416 DSSFIQEEIMTTISRKDEAVPNMFMVGDVKQSIYKFRQAKPELFLEKYETYEELDGARNR 475 Query: 440 HYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-----------EIPFIPVKSAGKNQALR 488 L N+RS +++ N +F + ++ + A Sbjct: 476 KILLYKNFRSRKEILDGTNFIFKSIMSKELGELEYTDKEALNLGADYVTFEDESLTFAEP 535 Query: 489 FVFKGETQPAMKMWLMEGESCGVGDYQST-----MAQVCAAQIRDWL-QAGQRGEALLMN 542 +P+ + + + D + A++ A+I+ + + + + Sbjct: 536 IDVIIFEKPSGNIEIQKDTDEDAEDLEEINEFQMEAKIIGAEIKKIMGREAGYRRKKVFD 595 Query: 543 GDDARPVRASDISVLVRSR-QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQ 601 R V DI +L+RS + L LEIP VY + F+ +E + +L LLQ Sbjct: 596 KGSYRDVEYKDIVILLRSTVNRTDVFLEELKNLEIP-VYADSTSGFFDNIEVKTILALLQ 654 Query: 602 AVMTPERENTLRSALATSMMGLNALDIETL------------------------NNDEHA 637 + P+++ L + L + + G + ++ + N+ Sbjct: 655 VIDNPKQDIPLLAVLRSPIGGFSDDELIDIKISMDKEYCYFFDKLSNYCVVGSDNDLREK 714 Query: 638 WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL-QE 696 + + YR ++ ++ L + + G +R ++ + Q Sbjct: 715 TKAFLRRLNDYRSKSLHLSLVELIWFLFTDTGYLAFVGTLPNGMQRQGNLRILFHRAKQY 774 Query: 697 AGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP- 755 T + ++ + + S+ L + ++V+I+TIHKSKGLE+P+V+L Sbjct: 775 EATSYRGLFNFINFMEKM--KNTSSDLGDAKLLGENDNVVRIMTIHKSKGLEFPVVFLAS 832 Query: 756 ----FITNFRVQEQAFYHDRHSFEAVLDLNAAPES--------VDLAEAERLAEDLRLLY 803 F E F+H+ D + + E +E++R+LY Sbjct: 833 TSKRFNNRELNNEFLFHHNFGIGIKYTDFEKRISYSSILRNLIQEKMKIENYSEEMRVLY 892 Query: 804 VALTRSVWHCSLGVAPLVRRRGDKKGDTD 832 VALTR+ + + +K Sbjct: 893 VALTRAKEKLIITGGVKEIEKSIRKWALS 921 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 44/265 (16%) Query: 891 KTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFP---- 946 +QR ++ + + + ++ R + G + L +F Sbjct: 1054 AEIQRRLSFKYKYSVATEIPSLL--SVTEIKRRFNDINQGGEDIYIPKLLKTPRFLEEEK 1111 Query: 947 --RGASPGTFLHSLFEDLDFTQPVDPNWVREKL-----ELGGFESQWEPVLTEWITAVLQ 999 A GT +H + + LD + + + E++ E + + V I Sbjct: 1112 ALTSAERGTIVHLVMQHLDLNRALTMESINEQISEMIKREFINEKEAKVVDIRKILRFFS 1171 Query: 1000 APLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVR 1059 + + L L A E F + + I + Sbjct: 1172 STIG-----LRMLRADKIYREYPFKIRVKSNEILK---------------LSKSDDENED 1211 Query: 1060 GMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 +++G ID +F ++DYK++++ ++ +Y Q Y +A Sbjct: 1212 IIVQGVIDTIFVENDEIVIIDYKNDYVNDNIVDT---------IKTQYKTQLNYYKIAAE 1262 Query: 1120 RYLRHRIAD-YDYEHHFGGVI-YLF 1142 + L R+ + Y Y + G V+ Y F Sbjct: 1263 KILNKRVKNIYLYLFYSGEVLEYDF 1287 >UniRef50_Q1Q4K9 Similar to ATP-dependent DNA helicase subunit AddA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4K9_9BACT Length = 1198 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 205/1207 (16%), Positives = 421/1207 (34%), Gaps = 141/1207 (11%) Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75 ++ A AGTGKT + L LLL + P+ +++ +TFTE A +E++ R Sbjct: 48 HKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPIL--KIIALTFTEKAASEMKIR 105 Query: 76 IRSNIHELRIACLRETTDNP------LYERLLEEIDDK-AQAAQWLLLAERQMDEAAVFT 128 + + ++ A L ++ + + + MD+A + T Sbjct: 106 LMEELEKIVAAMKGICRPEESSQVNNFISDLQTTYHTTYSEIERRAVQSLADMDKAMICT 165 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWK 188 IH F +L + ESG+ + E D + + P + + T K Sbjct: 166 IHSFAAYILRMFPIESGVAPGFTVDE------GSVFEDLFEKEW---PDWLELELSLTSK 216 Query: 189 GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIE 248 + R D Q + ++AL+ Sbjct: 217 NTVTWKNVLTRTELETIKSFAKRLSDFTIPLDTLTQKTGDPAVLDVLLNSYCDSINALL- 275 Query: 249 SSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHP 308 + K + + + ++ + E +T + SL + + E Sbjct: 276 ---LKCGKPDNKLLLQLQEFLTIFNELKTQGFHYLSSLHYNFGKTISKAKSGWEEADVLV 332 Query: 309 LFEAIDQ---LLAEPLSIRDLVITRALAEIR---ETVAREKRRRGELGFDDMLSRLDSAL 362 + + + LL + + + IT AL + +T + +G + FD +L+ + L Sbjct: 333 AQDIVKKCRILLRKLQRVDESFITTALNLVLPFCKTFRQTYLSQGYISFDGLLTLARNLL 392 Query: 363 RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA------------LL 410 ++ + + +++ F ++DEFQDTDP QY I + + L Sbjct: 393 QNNAYRSIRTSLKKNFSAILVDEFQDTDPIQYDIILFLSEMVNHHSDTIHGIPLEPGKLF 452 Query: 411 LIGDPKQAIYAFRGADIFTYMKARSEV---HAHYTLDTNWRSAPGMVNSVNKLF-SQTDD 466 ++GDPKQ+IY+FR ADI Y ++ A +L N+RS G+VN+VN LF + Sbjct: 453 IVGDPKQSIYSFRRADIEAYEHVVKQICNNEAPLSLLENFRSHSGIVNAVNDLFGEKIIT 512 Query: 467 AFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQI 526 + +IP+ + + + + GE + A A I Sbjct: 513 EQQGLQPKYIPIHAKR-----IQSDPFQRIEIISVSDTNGEELTAEAAREAEADWIAKWI 567 Query: 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDS 586 ++ + G + + ++ DI++L+RS + ++ +IP + Sbjct: 568 KNNV-FYDNGGDTSADAATSYKLKYKDIALLLRSFTQIRPYVESFKEHDIPFI-AEGEKY 625 Query: 587 VFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN-----------NDE 635 + T E + + LL+ + P L L + GL +I L +D Sbjct: 626 FYTTQEVIDFMNLLRTIENPYDTIALVGTLRSPFAGLTDNEIYLLKINDLLDYRKTISDN 685 Query: 636 HAWDVVVEEFDGYRQ----IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHIS 691 D + +F + + R V ++ +++ A + GE++L ++ Sbjct: 686 IDIDATIGDFYSFLRKYNVRSRIIPVSHLISEIINDPRFAGITASAWQGEQKLANLKKFY 745 Query: 692 ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK-HLVQIVTIHKSKGLEYP 750 Q++ L +++ D + L + +V+I+TIHKSKGLE+P Sbjct: 746 RTA-CKLEQIQGIS-LKHFINNMKKYIDEAREEGESPLSDETLDVVKILTIHKSKGLEFP 803 Query: 751 LVWLPFITNFRVQEQAFYH----DRHSFEAVLDLNAAPESV---------DLAEAERLAE 797 +V L + +E D ++ + L + + + E Sbjct: 804 VVILGNLHGEAKKENETLDSVAFDWNTSTTGIVLGKGEQQLRNLQSIILENKINERTWEE 863 Query: 798 DLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCI 857 + R+LYVA+TR+ L A + A L + +R + Sbjct: 864 EKRVLYVAMTRAKERLILTGALKDNDKSYIGLIMKSLSDAYDISLNNEPETPSGHVRKIV 923 Query: 858 EALCDDDIAWQTAQTGDNQPW-QVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 + +I + + + T +++ + R+ D + + ++ ++ Sbjct: 924 --FGNSEIFLENFNYTGARRFVSKTAEKTWDIDWNSFVRIWNDR-KQSMFAETEKPLFTS 980 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP--NWVR 974 L + + + Q A+ G+ H + E DF + + + Sbjct: 981 PSALSEEISPVHYETPTHNKHINSAEIQQEYAAAIGSLCHQILEKWDFQGTLQALYDLIT 1040 Query: 975 EKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 + + + + I L F+ L + Sbjct: 1041 SSVTIHFTNASLHHTIIHLIKTEAVTILTAF-----------------FHSKAYNELKNA 1083 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW---LGEDSS 1091 ++ L P L + + +++G ID+++ E + + DYK+++ + ++ + Sbjct: 1084 RI---------LGREIPILLHWEGQ-IMRGTIDIIYEFENQIIIADYKTDYASSIEDNPA 1133 Query: 1092 AYT----QQAMAAAMQAH----------RYDLQYQLYTLALHRYLRHRIADYDYEHHFGG 1137 + A + A + + +Y Q +YT A+ R L+ + Sbjct: 1134 LTNTCHEEDAFSNAEKINMNISSPTYTPKYHHQKTIYTEAVKRCLKIN----NPLFKL-- 1187 Query: 1138 VIYLFLR 1144 +FLR Sbjct: 1188 ---IFLR 1191 >UniRef50_C7HA04 ATP-dependent exoDNAse beta subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA04_9FIRM Length = 1233 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 227/1283 (17%), Positives = 397/1283 (30%), Gaps = 231/1283 (18%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 G L+ A+AG+GKT + +RL+ P+ + LL+VTFT AA AELR RI Sbjct: 19 GALLVSAAAGSGKTAVLTERAVRLITD------PEHPVDADRLLIVTFTNAAAAELRARI 72 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + + A L + A + TI FC + Sbjct: 73 GQALLKRSQAEPGNGA---------------------LRRQRMLLQRAPICTIDAFCLDL 111 Query: 137 LNLNAFESGMLFEQQLIE--DESLLRYQACADFWRRHCYPLPR----------------- 177 L + + + + LLR A ++ Sbjct: 112 LRKHFQALDIPPDFSPADPGSVELLRASALSETLENAYRDPDFCAFADLYGKGRTDRAAG 171 Query: 178 -------EIAQVVFETWKGPQALLR-----------------------------DINRYL 201 + + + + K L ++ R Sbjct: 172 ETILHVYDFLRALPDYDKKLDEFLAPWQEENGFAATCWHDLLLAEAARSARAAGELFRAA 231 Query: 202 QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSN 261 + P + D + + V +++ DA LD G + Sbjct: 232 LADCPGDREQELADAEEKKTPSAREKAKNAVLEKYTDAQERLDKAAALLGRVEQLAVAGE 291 Query: 262 QAKWIDKISAW---AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRH-----PLFEAI 313 D ++ + EE + + L ++ + R G P E Sbjct: 292 WTPLYDLLTPYVLGMEELPGLKGMKKRLNGEHKKVIRTRADEGAALFAQILELIPCSEEE 351 Query: 314 DQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGE--VLA 371 + R + A+ + + +KR R L F D + LR + G L Sbjct: 352 AEADRRAAEPRLRALFAAVRDFDARFSAKKRDRKLLEFSDFEHQALHLLRDQDGPPTALC 411 Query: 372 AAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYM 431 IR + M+DE+QDT+ Q ++R + L L+GD KQ+IY FR AD + Sbjct: 412 GVIRQNYAAVMVDEYQDTNALQDALYRCLASPA-GDDLFLVGDLKQSIYRFRQADPSIFR 470 Query: 432 KARSEVHAH-------------------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFRE 472 + A LD N+RSAP +V +N LF + + Sbjct: 471 EKLDSWPALPGGAARPRPAEGTPGTDAMLALDANFRSAPQVVEGINFLFERLMSPELGD- 529 Query: 473 IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQA 532 + G Q L GE +++ + ++ T A A +I + +Q+ Sbjct: 530 ------TAYGDGQRLICGAPGEYTGSVEAHFLPDDTA------ETDAGWIARRIEELVQS 577 Query: 533 GQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLE 592 G+ + +G RPV+ D +L+ +R + +ALT IP VY R+++ + Sbjct: 578 GEP----VRDGSATRPVQYEDCCILLAARIDFPAYVEALTARGIP-VYADARENLLDAPH 632 Query: 593 AQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWD------------- 639 + ++ LL+ + P ++ L +A+ + G D+ L Sbjct: 633 IRPLIALLKVIDNPAQDIYLAAAMLGPLFGFTDDDLVRLRARAEEIQKQQGENAPQRISL 692 Query: 640 ---------------------VVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATA 678 R++ R +L + ++ L Sbjct: 693 YGALLLTVNSGEDTPFTGKVRAFYARLTELRRMARSVPAEQLLEEIFASTGYLAALGVME 752 Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQI 738 G RR D + AG+ ALVR + L + + S V + Sbjct: 753 NGARRREDARRFASFCAGAGSG--GISALVRAIDAAALAGSTGQD--TVPGGSRPGCVTV 808 Query: 739 VTIHKSKGLEYPLVWLPFITNFRV----QEQAFYHDRHSFEAVLDLNAAPESVDLA---- 790 +TIH+SKGL++P+V++ ++ H + L + A Sbjct: 809 MTIHRSKGLQFPVVFVADTARRFNAADTRQPVLLHRMYGAGLRLRPEEGEGAYKTAAYTA 868 Query: 791 -----EAERLAEDLRLLYVALTRSVWHCSLGVA-PLVRRRGDKKGDTDVHQSALGRLLQK 844 AE +E +RLLYVALTR+ L V + + ++ G+ L + Sbjct: 869 LSNVHAAEMRSEQMRLLYVALTRAQDKLILTVPLGIGKTSNPFTRAAAFLEAGAGQTLCR 928 Query: 845 GEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVT 904 A LR + + + A+ + P+ + + L Sbjct: 929 QANSFADWLRAALLVHPNGGPLRRLAEDLE-LPFADTGSTITLTVQQALPEGVEPPDPEP 987 Query: 905 SYSGLQQRGHGIAQDLMPRLDVDAAGVA-------------------SVVEEPTLTPHQF 945 L Q + + L + +E P Sbjct: 988 EERPLAQADPALTEALRQGFAWQYPAAELARVPAKVSVTGIVHKAEQTTLERPGFLAKDG 1047 Query: 946 PRGASPGTFLHSLFEDLDFTQPVD-------PNWVREKLELGGFESQWEPVLTEWITAVL 998 A GT LH+ E DF + + + P + E + A Sbjct: 1048 LTAAEMGTALHAFLEHADFAALAAAKQAGTLETAIPAERDRQVEAKLTAPEIAEKLDAGR 1107 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 E+ +A E++F + + + + Q Sbjct: 1108 IRRFVESEAFARICAADEVLRELDFITALPAAEVLTAQG---------TDSADSAAVAQA 1158 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 + +++G DLV LLDYK++ + Y Q LY LA+ Sbjct: 1159 KVLVQGIADLVLVFPNHLELLDYKTDRRKSEDDFLAA-----------YRAQLDLYALAI 1207 Query: 1119 -HRYLRHRIADY-DYEHHFGGVI 1139 R+ + Y G +I Sbjct: 1208 SKRFAPKPVTYKGIYSLELGKLI 1230 >UniRef50_Q0FE31 ATP-dependent DNA helicase, UvrD/Rep family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE31_9RHOB Length = 1125 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 199/1162 (17%), Positives = 400/1162 (34%), Gaps = 156/1162 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AG+GKT + RLLL +++L +T+T+AA AE++ R+ Sbjct: 19 NTWVSANAGSGKTRVLTDRVARLLLNN---------TDPQKILCLTYTKAAAAEMQNRLF 69 Query: 78 SNIHELRIACLRETTDNPLYERLLEE---IDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134 ++ + + E E D QA A + TIH FC Sbjct: 70 DSLGKWAMLPDEELRTELKSLGENENTLSPDKIKQARTLFAAALETPGGLKIQTIHSFCD 129 Query: 135 RMLNLNAFESGMLFEQQLIED--ESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 +L E+G+ + ++E+ LR + ++ +A+ + Sbjct: 130 ALLRRFPLEAGVSPQFNMLEERQAKQLRIEVVERMAQQSETSEIDMLAKHLTRL--NTDD 187 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGI 252 L +I + G AP P D ++ + + + D + L L+++ Sbjct: 188 LTNEIVKKRTG---FDIAPTPKDFGISQDIS-LDKIFNERINPHNDIINSLIELLKTGSK 243 Query: 253 DRRKFNRSNQAKWIDKISAW-AEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFE 311 + K + ++D + + + ++ + E+ H F+ Sbjct: 244 NDMKAADKLREYFLDNTNNTKLKILEKVFLNGKTAKAGPYSAKENVATLKLIPKTHSFFD 303 Query: 312 AIDQLLAEPLSIR-----------DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS 360 ++ + + R LV+ + + K L +DD+++ Sbjct: 304 IQSKISKDVEATRKCRLAINAYNKTLVLHSFAQSFLKAYDKRKAFNAYLDYDDLINLSSK 363 Query: 361 ALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH--------QPETALLL 411 L S S + + + ++DE QDT P Q+ + + +L + Sbjct: 364 LLTSSSMAQWVLYRLDGGLDHILVDEAQDTSPAQWAVIDCLAREFTYGISANDRPRSLFI 423 Query: 412 IGDPKQAIYAFRGADIFTYMKARSEVH----------AHYTLDTNWRSAPGMVNSVNKLF 461 +GD KQ+IY+F+GAD + + +SE L ++RSAP +++ V+++F Sbjct: 424 VGDEKQSIYSFQGADPDIFSEKKSEFRDLFQHINQDMESRELLYSFRSAPKILSLVDQIF 483 Query: 462 SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQV 521 + + + G+ F+ K + QP ++W + D + +A++ Sbjct: 484 TDENIKNPKSKHKAFHDSKPGRVDLWPFIEK-QNQPDKEVWYRPVDMPAPNDPKQELARL 542 Query: 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR------QEAAQVRDALTLLE 575 A I+ LQ+ Q ++ RPV DI +LV+ R ++ L Sbjct: 543 IAKSIKGILQSKQTINV----DNELRPVNPGDILILVQGRETQSSSSLFKEILKELKSSN 598 Query: 576 IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIE--TLNN 633 +P V ++R +V + L +++L LLQ + +L A+ + ++GL ++ Sbjct: 599 LP-VAGADRLNVGDELAVRDILSLLQFANMANDDLSLAEAMRSPLLGLTENELFKTAHKR 657 Query: 634 DEHAWDVVVEE---------FDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRL 684 W + ++ R ++ +++ E LLA G E Sbjct: 658 QGTLWQSLRDQNHHTNALAILTDIRNQVGYLRPYELIERILTKHRGREKLLARLGSEVED 717 Query: 685 TDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKS 744 +++ LQ + + ++W S + + + ++++T+H S Sbjct: 718 GIDELLAQSLQYEALEPPTLSGFLQWFV-------SGEVEIKRDMGKG-NQIRVMTVHGS 769 Query: 745 KGLEYPLVWLPFITNFRVQEQA---FYHDRHSFEAVLDLNAAPESVDL--AEAERLAEDL 799 KGLE P+V LP + + + A ++ + + D + ++ + ++ E + Sbjct: 770 KGLESPIVILPDTGDKSLPQNAQITLSNNSSVWRSTGDEGSEIQNNAEKVIKEKQTQEKM 829 Query: 800 RLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEA 859 RLLYVALTR+ + A + +++ ++ + AL L + E Sbjct: 830 RLLYVALTRAESWLIICGAGTRK---NERSWYNLIKGALVSLNASKN-----DFKDIGEG 881 Query: 860 LCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQD 919 L D W++ + +T W + + ++ Q Sbjct: 882 LLFKDNNWESLSVKEKSGELNTKKNT------------YPKWLMKN----AKKIDRPKQT 925 Query: 920 LMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLEL 979 L P V + + G LH + E L Sbjct: 926 LAPSNLVGEKTLQNTFNSSNSD------AKELGKILHKILEFLPNIPKNQWEV------- 972 Query: 980 GGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 1039 L +S + L L L + Sbjct: 973 -----------------FLNGFFESNNFGVSDEIKDSLI------LEAISLLENPTLTYI 1009 Query: 1040 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 1099 + LS Q+ + G+ID + + +D+KSN S + + Sbjct: 1010 FFTPNGLSEVGITSHIPQLNNNILGYIDRLIIDKDTITAIDFKSNVSIPISDEEIPKGIL 1069 Query: 1100 AAMQAHRYDLQYQLYTLALHRY 1121 A Q +Y LAL + Sbjct: 1070 A---------QQAVYLLALQKI 1082 >UniRef50_C6AB51 Double-strand break repair helicase AddA n=5 Tax=Bartonella RepID=C6AB51_BARGA Length = 1158 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 198/1197 (16%), Positives = 391/1197 (32%), Gaps = 172/1197 (14%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 Q + A+AG+GKT ++ +RLLL +L +T+T AA Sbjct: 14 QATATHPQKNVWVSANAGSGKTHVLSERVIRLLLN---------GTPPARILCLTYTRAA 64 Query: 69 TAELRGRIRSNIHELRIACLRETTDNPL-YERLLEEIDDKAQAAQWLLLAERQMDEAAVF 127 A ++ RI + + + +E+ A Q A + Sbjct: 65 AAVMQSRIFRTLSSWNELDDAQLQETLTRFEKKTVNAQKLTYARQLFARALETPGGLKIQ 124 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIED--ESLLRYQACADFW-RRHCYPLPREIAQVVF 184 TIH FC+ +L+ E+ + +L ++ L ++ RR P +++ +V+ Sbjct: 125 TIHAFCESLLHQFMLEANIAGHFELPDEISRKKLLQESRRQLLARRDVQPALQQLFKVIS 184 Query: 185 ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELD 244 E LL + + + + + A D Q + + + Sbjct: 185 EHTFN--QLLYEATEKQHKLSDFLSSLLSE-NGEEKLRALFNLAPDETNQCLLEQIKQTA 241 Query: 245 ALIESSGIDRRKFNRSNQAKWIDKISAWAE--EETNSYQLPESLEKFSQRFLEDR--TKA 300 L + + ++K+S + +ETN + + + Sbjct: 242 RLPLYALNHCETNGSQSCKDMVEKLSQLEKVHDETNILNIISDIYFTIKGEPRKFSHLSR 301 Query: 301 GGETPRHPLFEA------------IDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGE 348 P + +++ ++ ++ + A + K+ G Sbjct: 302 KKSDQIWPFIQQMLEDKQNKLSILLEKYQCAKVATLNMAAFQLCAVYLKIYTNLKKANGF 361 Query: 349 LGFDDMLSRLDSALRSESG-EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---- 403 L FDD++ R L+ + + + + ++DE QDT+P+Q++I + + Sbjct: 362 LDFDDLIERTLHLLQRKGASQWVHYKLDRGLDHILLDEAQDTNPEQWQIIQLLAQEFFSG 421 Query: 404 ----QPETALLLIGDPKQAIYAFRGADIFTY----------MKARSEVHAHYTLDTNWRS 449 L +GD KQ+IY+F+GA + ++ ++ L ++RS Sbjct: 422 YSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAENGRIIQKKVQQTNQQFEKIQLHYSFRS 481 Query: 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA-----LRFVFKGETQPAMKMWLM 504 ++ SV+ +F ++ V A + + + ET W + Sbjct: 482 TADVLKSVDIVFETPENYKGLSAENTKTVHEAIRVHSPGEVVIWDAISQETSEFPHDWHL 541 Query: 505 EGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA 564 + + + +A+ A I +WLQ G+ A R +RASDI +LVR R + Sbjct: 542 SVDHLDTPEVR--LAEKIAETIANWLQKGEMLPA------KGRLIRASDIMILVRKRDQF 593 Query: 565 -AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGL 623 + + A IP V ++R + + + ++++ L + V+ P+ + +L L + + L Sbjct: 594 VSALSRAFKHRNIP-VAGADRLQLTKHISIRDLMALARFVLQPQDDLSLACVLKSPLFAL 652 Query: 624 NALDIETLNNDE--HAWDVV-------------VEEFDGYRQIWRKRGVMPMLRALMSAR 668 + ++ L W + E+ + YR + K V +++ Sbjct: 653 SEEELYQLAAHRTGSLWQSLFTHASSQASFKDAFEKLNHYRALVDKIPVFEFYNHILNND 712 Query: 669 NIAENLLATAGGERRLTD--ILHISEL-LQEAGTQLESEHALVRWLSQHILEPDSNASSQ 725 + +L+ G E + + + L T L A + L ++ Sbjct: 713 KGRQKILSRLGSE---ANDVLDAFMDYTLTIQKTGLPGLQAFLETL-------SASEPEI 762 Query: 726 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYH---------------- 769 + E + ++I+T+H +KGLE +V+L + Q H Sbjct: 763 KREFEQNNEEIRIMTVHAAKGLEAAIVFLVDPGSAIWHPQHAPHLLKVPLNNAKWNGKQA 822 Query: 770 DRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 829 D + +++ + E RLLYV +TR+ + + + Sbjct: 823 FIWRPNEKFDTKLSKQAISHLKERAEEEYRRLLYVGMTRAEDRLFICGYKGQKTQSHTWL 882 Query: 830 DTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN 889 L K +D A R CI I Q A + Sbjct: 883 QLVKKALEPHALAIKDSVEDIAAWRFCITPPSSVSIN----PKVPCAECQTLPPLPAFFS 938 Query: 890 AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGA 949 K + S + L +L + A+ Sbjct: 939 HKVPEEPVLPKPLKPSVASLSIEADTELSSSPKQLTISPVLGATNTNRAFSI-------- 990 Query: 950 SPGTFLHSLFEDL-DFTQPVDPNWVREKL---ELGGFESQWEPVLTEWITAVLQAPLNET 1005 G +H L + L D+ ++ R L +ESQ E L + +L Sbjct: 991 EYGNIVHRLLQYLPDYPLQKRRDYARNYLNIKASHWYESQREDALRH-VWKILDH----- 1044 Query: 1006 GVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGF 1065 V L L + + + E+ + + G Sbjct: 1045 -VYLKPLFSEHSRAEVSLMGIVKIRGKEHA--------------------------ISGQ 1077 Query: 1066 IDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL---ALH 1119 ID ++ + D+K+ E+ A A + LQ LY A+H Sbjct: 1078 IDRLYITQNSIIFADFKTGTPPEN----------EAAIASHHWLQMALYRKLLQAIH 1124 >UniRef50_Q16CX8 ATP-dependent DNA nuclease, putative n=31 Tax=Proteobacteria RepID=Q16CX8_ROSDO Length = 1125 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 205/1164 (17%), Positives = 384/1164 (32%), Gaps = 157/1164 (13%) Query: 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 + A+AG+GKT + RLLL + E +L +T+T+AA +E++ Sbjct: 17 PDASTWLAANAGSGKTRVLTDRVARLLLDK---------VAPEHILCLTYTKAAASEMQN 67 Query: 75 RIRSNIHELRIACLRETTDNPLYERLLE--EIDDKAQAAQWLLLAERQMDEAAVFTIHGF 132 R+ + E + + + + + +A A + TIH F Sbjct: 68 RLFKRLGEWAMLQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQTIHSF 127 Query: 133 CQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQA 192 C +L E+ + + IE+ + +A + + + + + G Sbjct: 128 CASLLRRFPLEARVSPQFTEIEERAADLLRA--EIIDTMAEGPDAAVIADLAQHYTG--E 183 Query: 193 LLRDINRYLQGEAPVIKAPPPDDETLA--SRHAQIVARIDTVKQQWRDAVGELDALI--- 247 + + + + P +E+LA + A + A+ + D D LI Sbjct: 184 NFVKLAKAVVQHKDGFRTPLSWEESLALFDQPADLTAKHIEDQVFLGDEAALFDTLIPPM 243 Query: 248 -------ESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 + + +K + N + + + + +D Sbjct: 244 QAKGGNDAKTAVKLKKISGLNFSALPALEEIFLTGRKAKPPFRAKIGTLPTKPTQDVVSD 303 Query: 301 GGETPRH---PLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357 + A D + + + + R +K RG L FDD++ R Sbjct: 304 AMPALDDFMCRVETARDARVGLLAAQKTYALHRFAGSFLPLYEEQKTLRGWLDFDDLIDR 363 Query: 358 LDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH---------QPET 407 + L E + I ++DE QDT P Q+ + R++ + + Sbjct: 364 ARALLSDEDVAAWVLFRIDGGIDHILVDEAQDTSPAQWDVIRKLAAEFTSGEGARQEVQR 423 Query: 408 ALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHY----------TLDTNWRSAPGMVNSV 457 + ++GD KQ+IY+F+GAD + + ++E + TL ++RSA ++ V Sbjct: 424 TVFVVGDKKQSIYSFQGADPREFDRMQAEFASKIEAAEQLFQNKTLAFSFRSASAILGVV 483 Query: 458 NKLFSQTDDAFMFREIPFIPVKSA-GKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 ++ F DA + I K + V + + + W + + Sbjct: 484 DRTFDGLTDAGFTTDEQHIAFKQTLPGRVDIWPVVEPQPSEEDRAWHDPIDRKAAHHHSV 543 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGD-DARPVRASDISVLVRSRQEA-AQVRDALTLL 574 +A+ A QI+ + + +G RPV+A D +LV+ R ++ A Sbjct: 544 ILAERVATQIKAMIAHDTIPDEKRSDGKITRRPVQAGDFLILVQRRSVLFTEIIRACKNK 603 Query: 575 EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL--- 631 ++ + ++R V L +++ LL + PE +L S L + + G + ++ L Sbjct: 604 DL-DIAGADRLKVGGELAVRDLAALLSFLAVPEDSLSLASTLRSPLFGWSEKELFQLAHH 662 Query: 632 NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH-- 689 +H W + D Y + + + + ++ E +L G R L L Sbjct: 663 REHDHLWQALRMRSDAYPETLKVLRDLRANVDFLRPYDLIERILTRHNGRRNLLARLGVE 722 Query: 690 --------ISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTI 741 +S+ L + S + W+ ++ + +++S + ++++T+ Sbjct: 723 AEDGINALLSQALAYERNAVPSLTGFLVWME-------TDDLEIKRQIDSASNQIRVMTV 775 Query: 742 HKSKGLEYPLVWLPFITNFRVQ-EQAFYHDRHSFEAVLDLNAAPESV----DLAEAERLA 796 H +KGLE P+V LP N P ++ D A + A Sbjct: 776 HGAKGLEAPIVILPDSGKRNNPVRDDIIILDDKPVWKTPANDTPGAMAAALDEIAAAQAA 835 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 E LRLLYVALTR+ + A K+ DT + D GL Sbjct: 836 ERLRLLYVALTRAEKWLIVAAA----GELSKQNDTWYQRVDAAVDAAGARLVDMHGLAVK 891 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI 916 D W+ + N A L+ R P + S Sbjct: 892 RHQKGD----WEALPLSEANQ---NTTVQATLDPCFTTRAPARAPLRETVS--------- 935 Query: 917 AQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREK 976 + + P + GT +H E L P D + + Sbjct: 936 -----------PSDLGGAKALPGEAGQDEEAAKAYGTSVHLFLEHLSAADPSDWPALVDV 984 Query: 977 LELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQL 1036 L G VLQ P +L+ L + E+ Sbjct: 985 LSDNGDPDLLRAASEAK--TVLQDP------NLAHLFTPDSLAEV--------------- 1021 Query: 1037 DTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQ 1096 + +F L G ID + + +D+K+N A + Sbjct: 1022 -AVTAEFGSAR--------------LHGIIDRLVVSDTAVLAVDFKTNQTVPSQPATCPE 1066 Query: 1097 AMAAAMQAHRYDLQYQLYTLALHR 1120 + M A YT AL + Sbjct: 1067 GILRQMGA---------YTHALKQ 1081 >UniRef50_B7AS99 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AS99_9BACE Length = 1022 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 167/1044 (15%), Positives = 341/1044 (32%), Gaps = 133/1044 (12%) Query: 202 QGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV---GELDALIESSGIDRRKFN 258 E + + + + +D +D ++ N Sbjct: 1 MDEFNESLPAQYLFDYVTKYIQGSREKFRRLLDICKDVAGPDMYIDNILSDLEGMDMLLN 60 Query: 259 RSNQAKWIDKISAWAEEE-------TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFE 311 N ++W++ + + + E + ++ + K + E Sbjct: 61 TENISQWMETAARIQFTDLSRKRGSGVDPDMKELVRNSRTKYRDSFRKLRDRLCSMSVEE 120 Query: 312 AIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESG---- 367 + +L A +R ++ +E + V K+ + + F+D+ S L Sbjct: 121 YLRELSANGAPLR--MLITLASEYMDAVDAAKKEKNIIDFNDIEHMACSLLVKHENDTDE 178 Query: 368 -EVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGDPKQAIYAFR 423 LA + + + +IDE+QD++ Q I + L ++GD KQ+IY FR Sbjct: 179 YTQLADDLASYYGEILIDEYQDSNMLQEMILTAVSRGRLDSSRNNLFMVGDVKQSIYKFR 238 Query: 424 GADIFTYMKARSEVH-----AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPV 478 A ++ + L N+RS ++ SVN +F + V Sbjct: 239 LARPELFLDKYVKYPDADGCEVIELRNNFRSRSQVLYSVNSVFEKIMHRECGGIEYTEDV 298 Query: 479 KSAGKNQALRFVFKGETQPAMKMWLME----GESCGVGDYQSTMAQVCAAQIRDWLQAGQ 534 + + + G + L + + V + ++ A+ I++ + Sbjct: 299 RLNPGLEFAQRTDSGMMDNRTSIRLADLNIQYDEDDVNTPRECEGRLIASIIKEVIDEDT 358 Query: 535 RGEALLMNGDDARPVRASDISVLVRSRQ-EAAQVRDALTLLEIPSVYLSNRDSVFETLEA 593 R DI VL RS A D L IP+ + ++T E Sbjct: 359 GMPVYDERLGTYRKAEYGDIVVLTRSLDGWADVFADELMNAGIPA-AAQSSSGYYDTYEI 417 Query: 594 QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN---DEHAWDV---------- 640 +++L LL + P ++ L + + L+ D+ + + D ++ Sbjct: 418 EQVLNLLAVIDNPAQDIPLAAVALSYFGTLDVNDLALVKSAYPDARLYESMNRYLNSHAD 477 Query: 641 -----------VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILH 689 ++ +GYR + ++ ++ + + G R ++ Sbjct: 478 NQDEICAKINNLLTMIEGYRTKSVYLTINELIWKIIYDTGFYDYVGMMPAGSMRQQNLDM 537 Query: 690 ISELLQ-EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLE 748 + + + A T +R++ + I + + ++ S + SD + VQI++IHKSKGLE Sbjct: 538 LCDKAESYARTSYHGLFNFLRYIEK-IRKYNLDSQSGASDM-SDNNAVQIMSIHKSKGLE 595 Query: 749 YPLVWLPFITNFRVQ---------EQAFYHDRHSFEAVLDLNAAPESVDLAEAE----RL 795 +P+V + I + + V+ + E + L Sbjct: 596 FPIVIVAGIAKKFNNMDARGRVVVDSDIGVGADIIDTVMRTKVSTPVKSAVEMKLVDDNL 655 Query: 796 AEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRT 855 AE++R+LYVA+TR+ + + K T S + D Sbjct: 656 AEEMRILYVAMTRAKEKLIMTGTLKNYDKMCAKWKT-TDVSTFDGIQGCSSYMDMIMPVA 714 Query: 856 CIEALCDDDIAWQTAQTGDNQPW----------QVNDVSTAELNAKTLQRLPGDNWRVT- 904 C +A+ D + + D + D+ A + VT Sbjct: 715 CGDAVNFDISVTEINKEPDEDEYNGDKHDIMAHNAADIHEAAKKGAVSIEPYRYGYAVTM 774 Query: 905 ----SYSGLQQRGHGIAQDLMPRLDVD-----------AAGVASVVEEPTLTPHQF---- 945 S S ++ + ++ + + +G+ V QF Sbjct: 775 KTKLSVSEIKLHEYEEQEEFTRDVLPELNAANNGKSGSESGIEGVQPAYEPCVPQFISKK 834 Query: 946 --PRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGG-----FESQWEPVLTEWITAVL 998 A GT H + E LD+ + + +R ++ Q + V + + Sbjct: 835 EDVAPAERGTAFHRVMECLDYNRCGSVDDIRGYIDELVDRNMMTRRQADAVNPQKVYDFC 894 Query: 999 QAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQV 1058 + + + A E F + I I I Q + Sbjct: 895 NSSIGAR--TAEAFRAGRLYREQPFVMGIPAGSIK------IYQELADRYNVSYSLLDEE 946 Query: 1059 RGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 +++G ID+ F G+ L+DYK++ + ++ + Y +Q +LY+ AL Sbjct: 947 TVLIQGVIDMYFEENGKVVLVDYKTDRVSGSNA--------EKILRDHYTIQLELYSEAL 998 Query: 1119 HRYLRHRIADYDYEHHFGGVIYLF 1142 R L +++ IY F Sbjct: 999 ERALGMEVSEKL--------IYSF 1014 >UniRef50_B0RA36 Putative helicase n=1 Tax=Halobacterium salinarum R1 RepID=B0RA36_HALS3 Length = 1211 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 216/1236 (17%), Positives = 406/1236 (32%), Gaps = 220/1236 (17%) Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76 I A AGTGKT T+ Y+ +L LT E ++ +TFT A AEL R+ Sbjct: 22 RNVAITAGAGTGKTTTLTERYVTILAENPS-------LTPENIITITFTRKAAAELTERV 74 Query: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 R +++ A D +A +++ V TIH FC R+ Sbjct: 75 REEVYDRLEAV------------------DSPEAYNRWRNVLDDLEDGYVHTIHAFCARL 116 Query: 137 LNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194 L A E+ + +++++ + L+ + +F R+ + ++ + L Sbjct: 117 LRERAVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDDDDVALLAQLWGRDQLVDVLA 176 Query: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDR 254 ++ Q E+ + D + ++V +D + L + + Sbjct: 177 GLLDERPQSESVLEAWRDADVDDYVDICWEVVCDLDVADARQTLYADGLLEQLRTVAGRV 236 Query: 255 RKFNRSNQAKWIDKISAWAE-----EETNSYQLPESLEKFSQRFLEDRTKAGGE------ 303 + + + + P ++ E K G Sbjct: 237 DREGAIADEDGLRAYRTLTKVATTLPDDPQESDPRDCQRAILELYEACEKKNGGLYSSSG 296 Query: 304 -------------TPRHPLFEAIDQLLAEPLSIRDLV-----------------ITRALA 333 L + ID ++A D V + RA Sbjct: 297 YVVGDRDDWGEHGDVYDDLKDTIDAVIAAVEPHADAVETTPGELEANSAHYALALMRAFD 356 Query: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 ++ EK RR L F D++ LR + + + +R +F M+DEFQDTDP+Q Sbjct: 357 DVLAAYTAEKDRRDTLDFPDVIETTLEFLR--ANDAVTERLREQFAAVMVDEFQDTDPRQ 414 Query: 394 YRIFRRIWHHQPET--ALLLIGDPKQAIYAFRGADIFTYMKARSEV-------------- 437 + + + + T + L+GD KQ+IY FRGAD+ T+ AR E+ Sbjct: 415 WELVKLLTGVDEGTASNVFLVGDEKQSIYGFRGADVTTFGNARRELQTVNEARGVDDVPD 474 Query: 438 -----HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK 492 L N+R+ ++ +N+LF P+ Q R Sbjct: 475 GEAESPTALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAPPQELTTQRDRIEDI 534 Query: 493 GETQPAMKMWLMEGESCGVGDY---------------QSTMAQVCAAQIRDWLQAGQRGE 537 +++ + ++ + AQ AA++ + Sbjct: 535 EGLTGSVEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALAARLTHLFDD--PPQ 592 Query: 538 ALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEML 597 + R D ++L+R R + + AL +IP + ++T E Q + Sbjct: 593 VQDPDTGVHREATPDDTAILLRRRTHLDRYQRALEEYDIPYTVV-GGVGFYDTPEVQALT 651 Query: 598 WLLQAVMTPERENTLRSALATSMMGLNALDIE-TLNNDEHAWDVVVEEFD-------GYR 649 LL+ + PE + +L L + + G + + + WD + E D Sbjct: 652 NLLRVLGDPEDDVSLYGVLRSPLFGFADDRLAPAVAEADSVWDALAETDDPQLADAFDLL 711 Query: 650 QIWRKR---------GVMP---MLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697 WR GV+P +L ++ ++ A G + + ++ + ++ Sbjct: 712 STWRTLSGCAAPSENGVLPWNRLLSRVIDDTGYLASVSADERGRQAIANVEKFRDQVRTW 771 Query: 698 GTQL-ESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF 756 + L+ + + + + + + D V+I+TIH +KGLE+P+V +P Sbjct: 772 SENGVHTAAGLLHRIDRQA---EIDPREGEADIPGDAEGVRIMTIHSAKGLEFPIVTVPD 828 Query: 757 ITN----------------FRVQEQAFYH-----DRHSFEAVLDLNAAPESVDLAEA-ER 794 + + + A ++ A E D + Sbjct: 829 LGSDLNFGRSVDDHGYVRLVDGTDDAPPVPAVGGPDPGDAFSIEKTAVHEYADRQSRPQE 888 Query: 795 LAEDLRLLYVALTRSVWHCSLGV---------APLVRRRGDKKGDTDVHQSALGRLLQKG 845 AE RLLYVA TR+ H L + D D + + L G Sbjct: 889 RAESKRLLYVACTRTRDHLLLCGTHDIDVDESGAIELGEPAAFDDADRWRDWVQPALLDG 948 Query: 846 EPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTS 905 A +R D+ ++ + W +D + ++ P S Sbjct: 949 -ALVAEAIRDGQARGEMDEASYTVRRPPRPVDWHTDDDAVDPALEISIPSPP-------S 1000 Query: 906 YSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFT 965 + ++ + + D + E L+P F GT +H + E Sbjct: 1001 LAPAKRIAATTLVNAVADASTDGHSYSQREESAGLSPTTF------GTVVHRINELRPPR 1054 Query: 966 QPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYL 1025 + + + +L E E + E + A +EF Sbjct: 1055 D--EWSTLIHRLSRMTGEVPTEADVREAVDHAADA--------------------VEF-- 1090 Query: 1026 PISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNW 1085 + SQL + ++ ++ + G+ID + ++++DYK+N Sbjct: 1091 -VDHIESGSQLQEVHDEYSVVARIDESR--------IAGYIDRLLVMPDAFHIIDYKTND 1141 Query: 1086 LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRY 1121 L +S A Y Q Y LAL ++ Sbjct: 1142 LSATTSD---------ELADHYRPQMLAYALALLQH 1168 >UniRef50_C6QAP4 Double-strand break repair helicase AddA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QAP4_9RHIZ Length = 1196 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 195/1201 (16%), Positives = 383/1201 (31%), Gaps = 162/1201 (13%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 + A+AGTGKT L L + E++L +T+T+AA AE+ R+ Sbjct: 30 SAWVRANAGTGKTHV---------LTLRVLRLLLAGTSPEKILCLTYTKAAAAEMSRRVF 80 Query: 78 SNIHELRIACLRETTDNPLYERLLEE-IDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRM 136 + A +E + + ++ A + A V TIH F +R+ Sbjct: 81 DRLAGWVTADEKELEKDIRKVTGGDVSVETLQLARRLFANAIETPGGLKVQTIHAFAERL 140 Query: 137 LNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFE--TWKGPQA 192 L E+G+ + ++++D + L+ +A + + + + Sbjct: 141 LQRFPLEAGVPPDFKILDDAAAGDLKARAIEQTLLDATSEPETPLGRALDVIVRYATDTQ 200 Query: 193 LLRDINRYL--QGEAPVIKAPPPDDETLASRHAQIVARIDT-----VKQQWRDAVGELDA 245 + I+ + + V + A+I + R+ E Sbjct: 201 FDKLISNAVEERRWLDVANRREAKAGATLADVAEIERHLRQSLGVRAAIAVRELHEECAY 260 Query: 246 LIESSGIDRRKFNRS--------------------NQAKWIDKISAWAEEETNSYQLPES 285 ++ S + + + + + + +S + T + ++ Sbjct: 261 VLSESDLRELTEHLATGKASDTGHVPTLQSAAGLTDAPRRFEALSGYFLTATGEPR--KT 318 Query: 286 LEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRR 345 L + + + LF +L A L + + I +R Sbjct: 319 LMTKALASSKPGLNDRCLAAQQRLFALSKELKALSLVESSMALYVVAGIILHRYTEARRS 378 Query: 346 RGELGFDDMLSRLDSALRSE--SGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 G L F D++ + S L + + + + ++DE QDT P+Q+ I + + H Sbjct: 379 AGALDFADLILKTKSLLEGDGGQAQWVLFKLDGGLDHILVDEAQDTSPEQWDIVKALAHE 438 Query: 404 ---------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----------AHYTLD 444 + +GD KQ+IY+F+GAD + A L Sbjct: 439 FFMGAATRDGSPRTVFAVGDEKQSIYSFQGADPKMFADAGIRFAALARDAGLIWKSIELT 498 Query: 445 TNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMW-- 502 ++R+ ++ +V+ +F+ P +A + V T+ + Sbjct: 499 MSFRTVTPVLAAVDAVFADAAKTPGLTAGGPPPKHNAIRLGHAGLVEMWPTEKPDDLNAA 558 Query: 503 --LMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRS 560 + +A+ A I+ WL G+R E R +RA DI +LVR Sbjct: 559 DPWAPLSDTSEHSPANRLAERIADTIKGWLDRGERLE------SQGREIRAGDILILVRK 612 Query: 561 RQEAA-QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATS 619 R A + AL I +V S+R ++ + + Q+++ L ++ PE + L + L Sbjct: 613 RNPFAVPMVAALKRRGI-AVAGSDRIALTDQIAVQDLMALGDFLILPEDDLALAAVLKGP 671 Query: 620 MMGLNALDIETL---NNDEHAWDVVV-------------EEFDGYRQIWRKRGVMPMLRA 663 + G + D+ + + W ++ E +R + Sbjct: 672 IFGFDDDDLLAIAPGRKSKTLWSALLDSTGVKPEYRDAAETLKRWRAKADFTPPFEFFSS 731 Query: 664 LMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNAS 723 ++ E +L G E + L S + L A Sbjct: 732 VLDRDGAREKMLRRLGPEAADVIDEFLDLALSYDDGTPPSLTQFLAELRAI-------AP 784 Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPF----------------ITNFRVQEQAF 767 + ++ + V+++T+H +KGLE P+V+LP ++ + Sbjct: 785 EVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTASGDLSAASLVRLSGLPRPDHIP 844 Query: 768 YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDK 827 + + L A + EA E RLLYVA+TR+ + + R + Sbjct: 845 EPIVWTVKGTSRLEAVTIARRGREAREHEERNRLLYVAMTRARDRLYIAGFEGKKGRAES 904 Query: 828 KGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAE 887 + ++ L + + + D + + +++ + ++ Sbjct: 905 CWYDAISEALLPVAEEIDDNGKKVWRIETAQTAELDQSRGEKTRQLESE--ERPAFASER 962 Query: 888 LNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPR 947 + +P R+ Y + +M AA + + H+F R Sbjct: 963 ARPEPKLSVPLAPSRLEPY-----APDAEGEPIMSAKADAAATYDAPSPLAGNSEHRFLR 1017 Query: 948 GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGV 1007 GT H+L + L + + G Sbjct: 1018 ----GTLTHALLQHLPSVAASGREAIATAFVA------------------------KRGA 1049 Query: 1008 SLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFID 1067 LS+ + E +S A P++A P L G ID Sbjct: 1050 VLSRKARDGIVRET--LAILSSADFAPLFGPNSMAEVPIAAVIPRPSGSGPALDLSGQID 1107 Query: 1068 LVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL-HRYLRHRI 1126 + + ++DYK+N + A Y Q Y LAL Y R+ Sbjct: 1108 RLAVTDDEVLIVDYKTNRPPPSEVRFVAPA---------YLYQLAAYRLALGEIYPGRRV 1158 Query: 1127 A 1127 Sbjct: 1159 K 1159 >UniRef50_A6UEI6 Double-strand break repair helicase AddA n=17 Tax=Rhizobiaceae RepID=A6UEI6_SINMW Length = 1189 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 217/1200 (18%), Positives = 387/1200 (32%), Gaps = 149/1200 (12%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 D L + A+AG+GKT + +RLLL +L + Sbjct: 18 DWTTERQALASDPARSAWVSANAGSGKTHVLTQRVIRLLL---------AGCRPSAILCL 68 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDN-PLYERLLEEIDDKAQAAQWLLLAERQM 121 T+T+AA +E+ R+ + E E +A + A Sbjct: 69 TYTKAAASEMSNRVFEKLAEWATLDDAALEKRIEAIEGKRPATGKIQEARRLFARALETP 128 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFWRRHCYPLPREI 179 + TIH FC+ +L+ E+ + +++D + L A RE+ Sbjct: 129 GGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAANDREL 188 Query: 180 AQVVFETWK-----GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQ 234 A + G + LL I + A + + Sbjct: 189 AAAFATVLELADDTGLEKLLAAIVANRAQIQAFLDRVSGRGGLDTHLRAALDLNPGDTPE 248 Query: 235 QWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFL 294 A L L ++ +D I+ ++ + FL Sbjct: 249 AIMAAAWPLAGLNGAALVDYIGLASRLGGTKPTAIAEGFRTVRAIGDPAARYDRLLETFL 308 Query: 295 EDRTKAGG--------------------ETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334 K E R L +D+L + Sbjct: 309 NGGGKPKADSAFLNAAMRREAPHLESLIEEARSHLLACVDRLSIVRMYEATRAALVLAER 368 Query: 335 IRETVAREKRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393 + K+ R +L F+D+++R + L RS+ G + + ++DE QDT P Q Sbjct: 369 LNRDYESLKKARSQLDFEDLINRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQ 428 Query: 394 YRIFRRIWHH--------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----- 440 + I + + + + +GD KQ+IY+F+GA + + R+ Sbjct: 429 WTIIQSLAADFFAGDTARADDRTIFAVGDEKQSIYSFQGARPERFSRERTLTERRVRAGN 488 Query: 441 -----YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSA-----GKNQALRFV 490 L ++RS ++++V+ +F+ +A V ++ L V Sbjct: 489 KRFSPIRLQLSFRSTVDVLSAVDTVFANIGNARGLSARDEAIVHASNRIGQPGAVDLWEV 548 Query: 491 FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR 550 E + + W ++ + +A+ AA + DW+ G+ ++ R +R Sbjct: 549 IAPEPAASDEDWTAPFDATPERAPVNILARRIAAVLEDWI-----GKETVIEKGVRRAMR 603 Query: 551 ASDISVLVRSRQEA-AQVRDALTLLE-IPSVYLSNRDSVFETLEAQEMLWLLQAVMTPER 608 D+ VLVR R + AL IP V ++R + + Q+++ L + V+ PE Sbjct: 604 PGDVIVLVRKRDAFVNALMRALKRRGNIP-VAGADRLVLTSHIAVQDLIALGRFVLLPED 662 Query: 609 ENTLRSALATSMMGLNALDIETL----NNDEHAWDVV----VEEFDGYRQIWRKRGVMPM 660 + +L + + ++ L D+ L N E W + VEE Y RK Sbjct: 663 DLSLAALFKSPLVNLCEDDVFELAARRNEGESLWHRLQQAGVEETSRYNATVRKLAAFST 722 Query: 661 LRALMSARNIAENLLATAGGERRLTDIL--HISELLQEAGT-QLESEHALVRWLSQHILE 717 L +S + +L GG R L +S++L E T L+ E + + L I Sbjct: 723 LSRELSPHDFYARILGAHGGRRAFLARLGSEVSDILDEFLTFALDHERSGLPGLQAFIST 782 Query: 718 PDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAV 777 + A + + + ++ V+++T+H +KGLE P+V+L Q R + Sbjct: 783 LEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEKPQ 842 Query: 778 LD-----------LNAAPESVDLAEAERL-----AEDLRLLYVALTRSVWHCSLGVAPLV 821 D +AP S+ + ERL E RLLYV +TR+ + Sbjct: 843 ADQTLLTVPVWRAPGSAPNSLIADDNERLKMLAEEEYRRLLYVGMTRAADRLIVCGYRGQ 902 Query: 822 RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVN 881 R+ D + V + L+ + P+ + L AW+ + P Sbjct: 903 RQNVD-TWHSMVQGTLAQDLMGRATPRLFRAAGEEWQGL-----AWRETHVPRDLPAADG 956 Query: 882 DVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLT 941 E L R +R + +D +S+V T Sbjct: 957 ASGEPEQAKAGLPRALFTAPPPP------RRLPRPLAPSGTAIAIDEPDGSSIVGSALFT 1010 Query: 942 PHQFPR-GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA 1000 P+ G LH L + L V+ E+ W + A + Sbjct: 1011 GKNAPKFSMLRGAILHRLLQVLPSIDAVERTAAAERYLARSVPR-WPEAERLALAATVMD 1069 Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060 L E++ S + TL + Sbjct: 1070 VLG--------------HAELQPLFGEHSRAEVSVMGTLKLGPREFA------------- 1102 Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNW-LGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALH 1119 + G ID + + DYK+N + + Y Q +Y L Sbjct: 1103 -VSGRIDRLAVSGDTVTIADYKTNREIPASAEDIAPV----------YRNQLAIYRELLK 1151 >UniRef50_A0P3P8 Helicase, UvrD/Rep family protein n=2 Tax=Rhodobacteraceae RepID=A0P3P8_9RHOB Length = 1178 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 194/1205 (16%), Positives = 359/1205 (29%), Gaps = 168/1205 (13%) Query: 3 DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 +V L + + A+AG+GKTF ++ +RLLL +L + Sbjct: 16 EVTRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLD---------GTDPSRILAL 66 Query: 63 TFTEAATAELRGRIRSNIHELRIACLRETTDNPL-YERLLEEIDDKAQAAQWLLLAERQM 121 TFT+AA AE+ R+ + E E + A A + A Sbjct: 67 TFTKAAAAEMATRVFKILGEWVTKDDEALAAELQDIEGRKPDAARLAMARRLFARALETP 126 Query: 122 DEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA- 180 + TIHGFC+ +L+ E+ + +++D A + H E A Sbjct: 127 GGLKIQTIHGFCESLLHQFPLEANVAGHFAVLDDRVAAELMAASRATVLHVAETEPESAF 186 Query: 181 -----------------QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHA 223 + + E + A R + E + + + A R A Sbjct: 187 GRALASVIDLMSDGGAQKALDELIQSRDAFRRWTVDAVDLETALAELAELLETDPALRLA 246 Query: 224 QIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP 283 + T + + + + A SA A E Sbjct: 247 DFDEQFRTACPLDLNTCLAYAEALRTGTKTDQARADDLVAAARFTGSAAAFREAWQAIFL 306 Query: 284 ESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLV-------ITRALAEIR 336 + + + + L +LLA R + + R + Sbjct: 307 TAKLEPRKSLATKKVAEAFPEMLEALEAEQQRLLALLDQRRKVATYEGTSSLLRLADAVI 366 Query: 337 ETVAREKRRRGELGFDDMLSRLDSALRSESGE-VLAAAIRTRFPVAMIDEFQDTDPQQYR 395 R K RG L F+D++ + + L+ + + ++DE QDT P+Q+ Sbjct: 367 GHYERAKTARGYLDFEDLVVKTATLLQKSDAALWVQYKLDQGLDHILVDEAQDTSPRQWE 426 Query: 396 IFRRIWHH--------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH------- 440 + + L +GD KQ+IY+F+GA + R Sbjct: 427 VVTSLASEFFAGTGARDRVRTLFAVGDEKQSIYSFQGAVPAYFDAMRRAFSGKAEAAELE 486 Query: 441 ---YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA----LRFVFKG 493 L ++RS P ++ +V+K+F + PV A + L + Sbjct: 487 FHSVNLQLSFRSTPDVLGAVDKVFHDESAHKGLSQDVKAPVHEAIRRDPGIVDLWPLEAE 546 Query: 494 ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASD 553 W + G G +A+ AA+I W++ G D Sbjct: 547 AEIEEPDDWRQPIDHVGSGSPMLKVARRIAAEIAQWMRDGTAD--------------PGD 592 Query: 554 ISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 + +LVR R + L L+IP+ S+R + + + Q++ L + ++ PE + +L Sbjct: 593 VMILVRKRGPFVEALNRELKELDIPA-AGSDRLVLTDHIAVQDLAALGRFLLLPEDDLSL 651 Query: 613 RSALATSMM--------------------GLNALDIETLNNDEHAWDVVVEEFDGYRQIW 652 L + + G + ++ W V + + +R Sbjct: 652 ACVLKSPLFDLTDDDLLEVARETPEKVRPGTLWQMLVKRSDTSDKWKAVRAKLEDWRARA 711 Query: 653 RKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLS 712 L+ A + A G E ++ + + + W++ Sbjct: 712 DFVPPYEFYARLLGADGGRKAFRARLGVEVDDVLDEFLALTIAYEQSGTPGLEGFLAWMA 771 Query: 713 QHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL--------------PFIT 758 + + + L + K +V+I+T+H SKGLE +V L F+ Sbjct: 772 -------AAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGAAPVSAIHDPAFLP 824 Query: 759 NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED-LRLLYVALTRSVWHCSLGV 817 R++ D ++ A + E+ RLLYVALTR+ + Sbjct: 825 RRRLENDLLPPALVWLPPKADRTPWHDAAVEALRDAQEEEYRRLLYVALTRAEDRLIVCG 884 Query: 818 APLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQP 877 R + + V ++ + A + A +P Sbjct: 885 WEPKRGAHENCWYSMVSRALKPEARELTASDGAVSAWRWQKEGTAAGPEAGGAAHVSAEP 944 Query: 878 WQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEE 937 + P +W T L ++ ++ Sbjct: 945 GS--------------EEPPLPDWLSTPVRPLPKKKRLQPSRAFEAMEEKEGIDPVPAVS 990 Query: 938 PTLTPHQFPR-GASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITA 996 G +H L E L + E + ++ + + Sbjct: 991 RLQAGRDLASWPLERGRLIHRLLELLPDIAEGERLAASEAYLRQALKPEFADRSSHLLRE 1050 Query: 997 VLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 V A L+ L + + E+ I Sbjct: 1051 V-AAILDMPEF--ETLFCGHARAEVPLVGTIRAS-------------------------D 1082 Query: 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTL 1116 + G ID + + R ++DYK+N+ S A Y Q +Y Sbjct: 1083 GTEVEISGQIDRLVVEDNRVVIVDYKTNFHPPASVAEIPLE---------YRAQLCVYRE 1133 Query: 1117 ALHRY 1121 L + Sbjct: 1134 MLKQI 1138 >UniRef50_C6P6T0 UvrD/REP helicase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T0_9PROT Length = 1134 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 217/1206 (17%), Positives = 399/1206 (33%), Gaps = 195/1206 (16%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 + L L + ++EA AG+GKT+ + + +RLLL ++L +TFT A Sbjct: 3 NQLALDPKHSIVVEACAGSGKTWLLVSRIVRLLLDGAQ---------PSQILAITFTRKA 53 Query: 69 TAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLL-LAERQMDEAAVF 127 E++ R++ + +L +A L + + Q A+ L + Sbjct: 54 AQEMQARLQLWLRDLAMADDAAVRKFFAERGLESLSESQLQRARSLYGSVLLAQPGITIS 113 Query: 128 TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187 T HG+ +++ + ++ L+E + +A + + +AQ + + Sbjct: 114 TFHGWFMQVMQRAPLNADVMLGMSLLERAGSEQEEAWEELLEQMRKQPDGALAQYMQWLF 173 Query: 188 K--GPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID--------TVKQQWR 237 G + + +L A + LA ++ A + Sbjct: 174 GECGLFNTRKLLFNFLGKRAEWWAYTQGQTDVLAFALDKLRADLAVDMDFDPVADWGMCG 233 Query: 238 DAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKF-------- 289 ++ A + D +S ++ + EE + P + Sbjct: 234 NSEEVFFAFVRQLANDGTGTQKSKASELELAWTDSRPEERFAKVQPSLFTQAGEPRSFKP 293 Query: 290 SQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEL 349 +++ + E L E D L + + + E K ++ ++ Sbjct: 294 TKQQDAEAFLVTREALFGSLQEVRDTLAEQQAYRLNEAVLHCGVAFLERYQALKAQKQQM 353 Query: 350 GFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH----Q 404 F D+ +L L+ SE E + + +R+ ++DEFQDT+P Q++I R + Sbjct: 354 DFSDLEWQLCRLLQQSEHAETMQYKLDSRYRHVLLDEFQDTNPLQWQILRAWFDASVAVD 413 Query: 405 PETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDT-----NWRSAPGMVNSVNK 459 + + ++GDPKQ+IY FR AD + AR + +++ T R++ +V++VN Sbjct: 414 SQPTVFVVGDPKQSIYRFRRADARLFGVAREYLQEYFSAQTQGNSLTRRNSQPVVDAVNA 473 Query: 460 LFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPA-------------MKMWLMEG 506 +F + D F F E + G L ++ L + Sbjct: 474 VFHEQPDGFEFVEHQTHQKELPGYVLVLPLAVAEVIPSPNGGGDINGAGGEGEELRLRDP 533 Query: 507 ESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 566 + + + Q+ AAQ + LQ R + G R DI VLVRSR Sbjct: 534 LTTPRDEAEEGARQIEAAQFAEMLQTIARDW-SVNEGGQERRATYGDIMVLVRSRTHLTV 592 Query: 567 VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 +AL IP + S R + +TLEA+++ LL ++TP + L L T + + Sbjct: 593 YEEALRARHIPFIS-SRRGGLLDTLEAEDVQALLMFLITPFADLALAQVLRTPIFACSDA 651 Query: 627 DIETLNND------------------------EHAWDVVVEE--------------FDGY 648 D+ L + +W ++ + Sbjct: 652 DLMRLAQNSAEYGATSSEGGAEISAQRSALGTRTSWWQRLQHLGDPSPALRRATGLLQRW 711 Query: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERR---LTDILHISEL-LQEAGTQLESE 704 + K V +L + ++ A E R ++ E+ L + S Sbjct: 712 LALADKLPVHDLLDRIYFEGDVLARYAAVLPPEMRAKVAANLHAFMEIALSVDAGRYPSL 771 Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIT------ 758 ++ L + D + L S V+I T+H+SKGLE P+VWL Sbjct: 772 PRFLQELRELRDSKDDAPDEGK--LGSAGDAVRIYTVHESKGLEAPIVWLLDANAEKRSM 829 Query: 759 -------NFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVW 811 ++ QE H + + A++ E++ LLYVA+TR+ Sbjct: 830 AGNDVLLDWPTQEPQPSHFSLYADQASRGKKRAHLFEQDAAQQAREEMNLLYVAMTRAQQ 889 Query: 812 HCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQ 871 + +G K+ + + + + E + + +E + A Sbjct: 890 ALIVSG-----NKGGKENRSTTWYERIAAVARDQENPLRKAVPSAVEKQGAAGLVTLPAI 944 Query: 872 TGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGV 931 + N + + L Q + D+ +A Sbjct: 945 EPAGKRAARNTMQQQ------------RGIWLH---ALLQHLSETSPDVTTSHSTKSASG 989 Query: 932 ASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLT 991 P LTP P G FT P + ++ + G L Sbjct: 990 QVAGFRPPLTPRPLPAGEGA------------FTGPGEREMLQ---QRLGIPFAEFESLL 1034 Query: 992 EWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCP 1051 + +L L + RN EM Sbjct: 1035 QQAQHLLT--LPQLVRFFDDRQYRNACNEMP----------------------------- 1063 Query: 1052 PLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQY 1111 ++ RG LK ID + + +++DYK LG+ A RY Q Sbjct: 1064 ---YINARGELK-RIDRLVEFDDEVWVVDYK---LGDSEDA------------DRYRQQM 1104 Query: 1112 QLYTLA 1117 Q Y A Sbjct: 1105 QEYRAA 1110 >UniRef50_Q2FNI4 UvrD/REP helicase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FNI4_METHJ Length = 1149 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 207/1236 (16%), Positives = 389/1236 (31%), Gaps = 210/1236 (16%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 M+ L+ + ++ A AGTGKTF + YL L+ + + ++L Sbjct: 1 MAATPRQLEAISR-HDVSMVVTAGAGTGKTFVLVEKYLNLVQD--------QGYRIRDVL 51 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +TFT+ A AE++ R+R I E Q A + Sbjct: 52 ALTFTDKAAAEMKERVRKTIAERLKDDPDN---------------------QVWKDAHEE 90 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL--RYQACADFWRRHCYPLPRE 178 + A V T H FC ++L A E+G+ ++++ L +A R+ + Sbjct: 91 LVIAPVMTFHSFCAQILREFAIEAGLDPGFVILDEGQALAVEREAFETLIRKPPEEIQES 150 Query: 179 IAQVVFETWKG-----PQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVK 233 + +++ + K L ++ + +LQ + P Q+ + Sbjct: 151 LIRLLAQIEKFQVNQIMTTLAKNTDAFLQFAEDLAGDPDGIINAWEIFLEQVRTPVINQF 210 Query: 234 QQWRDAVGELDALIESSGIDRRKFNRS------------------------NQAKWIDKI 269 D + I + R K +R+ A+ KI Sbjct: 211 FADTDIRDAISDFIRFEEVYRNKDDRAVRYLQQVCPYLYDLTPDAPPETLHKAAEEFLKI 270 Query: 270 SAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVIT 329 + + + L +F + P L+ D + Sbjct: 271 RPTGKLGSQKIWDNDDLIRFREAKTCLIENLEKAVPFFSLYIDKDSRFTASTITFFRDLA 330 Query: 330 RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389 + + KR+ + F+D++ L+S ++A IR R+ ++DEFQDT Sbjct: 331 LVAGYYFDLLHMLKRQANGVDFNDLIQLTREFLQSHQD-IVARHIRPRYQYILVDEFQDT 389 Query: 390 DPQQYRIFRRIWHH--QPETALLLIGDPKQAIYAFRGADIFTYMKARSEV-----HAHYT 442 DP Q+ I I +L ++GDPKQ+IY FR AD+ + +A++ + Sbjct: 390 DPAQFEIITAIIGELQPGTRSLFIVGDPKQSIYLFRNADVTRFKEAQTRILSDCKGNLIN 449 Query: 443 LDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSAGKNQALRFVFKGETQPAMKM 501 LDT++RS ++ VN LFS+ + E + P++ +A + + Sbjct: 450 LDTSFRSCREVIGCVNYLFSRIFASTEKPWEFGYEPIQVCDDRKASPGSIT------VLL 503 Query: 502 WLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSR 561 + + + A + A + + G + + RP DI++L+ R Sbjct: 504 PGKAPKGSERSETKEIEAGMVADLVHQIVSCG-SFQITDRD-GVMRPAGYGDIAILIERR 561 Query: 562 QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMM 621 + AL+ E P Y+ + E ++ +L ++ P L L + Sbjct: 562 THLTRYTTALSRKETPF-YVHGGIGFYSRQEIYDIYNILSFLLRPYDSAALFGVLRSPYF 620 Query: 622 GLNALDIETLNN----------------------------------------DEHAWDVV 641 + I + N D+ Sbjct: 621 SFSDPLIYHILNVPGAKRRWSLYEKLRACAERFCTRPSEIEPSAEILSCSPADQELILRA 680 Query: 642 VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQL 701 + +R + + V+P++ ++ I A GE++ ++ + +++ G Sbjct: 681 ARLLESWRNLAGREPVVPLVNRIIRESGILTIYGALEQGEQQAANLTKLLGIIR--GRTE 738 Query: 702 ESEHALVRWLSQHILEPDSNASSQQMRLES-DKHLVQIVTIHKSKGLEYPLVWLPFITNF 760 ++L + ++ + L++ K V I+T+H +KGLE+P+V LP + + Sbjct: 739 GGYYSLFDLVQDMMISIADEEREGEAALDTLSKTSVNIMTVHAAKGLEFPVVILPDMGSS 798 Query: 761 RVQE-------------QAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALT 807 R + D + + + + + AE RL YV T Sbjct: 799 REGKLGPILSGDHPHLYGVRIPDPDQDFDIKETPVYTALSLIQKEKESAERKRLFYVGAT 858 Query: 808 RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAW 867 R+ H L + + + + G+ + I Sbjct: 859 RARDHLVLCGKQPDKFYESVDKSNNRIDWVCTLFGITKDIAEEGGVISIDPEDGGKPIDI 918 Query: 868 QTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVD 927 D + L + YS + I +P D+ Sbjct: 919 TILTDPDQLTRMWAQEALPPLTLPDEYAKLSGTRKRGLYSDMPDEKATIRP--VPVTDIG 976 Query: 928 AAGVASVVEEPTLTPHQFPRGA-----SPGTFLHSLFEDLDFTQPVDPNWVREKLELGGF 982 G A+ EE P G+ GT LH +F + L G Sbjct: 977 LLGKATGHEETIHQV-TIPGGSHLLPDEIGTLLHHIF---------SGKDTKSVLVSYGI 1026 Query: 983 -ESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIR 1041 + E PL V E+ F Sbjct: 1027 TSPEAESFCNTLYQRFCSTPLIRDAVR--------SFQEVSFI----------------- 1061 Query: 1042 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 S P + G ID + + + ++DYKS G+ + A Sbjct: 1062 ---TYSGNFP----------VTGRIDRLIQDSRNEWAVIDYKS---GDKTGA-------- 1097 Query: 1101 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 +LQ +Y +A + + Y G Sbjct: 1098 -------ELQLNVYRIAAEVLTGQPVRMFLYSMKTG 1126 >UniRef50_C8WQE1 UvrD/REP helicase n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WQE1_ALIAD Length = 1240 Score = 528 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 220/1262 (17%), Positives = 379/1262 (30%), Gaps = 223/1262 (17%) Query: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 ++ A AG+GKT +A L A +++LLV+TFTEAA E+R RI Sbjct: 19 NLVVSAGAGSGKTAVLAERIASL-------AEGDPKFRMDQLLVMTFTEAAAEEMRARIV 71 Query: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137 + E + A+ + ++A + TIH FC +L Sbjct: 72 RRLAERAAEAEQAGESVK---------------ARRFSRLAHRANDAQISTIHSFCLSLL 116 Query: 138 NLNAFESGMLFEQQLI--EDESLLRYQACA---DFWRRHCYPLPREIAQVVFETWK---- 188 +A E+G++ +++ E++++L A D W RH P+ + Sbjct: 117 RDHAVEAGLVPGFRVLSGEEDAVLLRGAAQATLDEWARHLERGPQLCTALAALRLHRQQQ 176 Query: 189 ----------------GPQALLRDINRYLQGEAPVIKAPPPDDETLAS------------ 220 P L +I R+ + A Sbjct: 177 AVNGVLELCRVALSQVDPGGWLAEIARHYDADGLWAGPFAEAFARWARMKVARAVEHMQR 236 Query: 221 --RHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETN 278 + + + V + L + + A + SA +E Sbjct: 237 GLAELERMRAPEKVVAGALSILSNLKEALALLSTPGAPLDPDRLAPLVHWESARLSKEYE 296 Query: 279 SYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRET 338 ++ + + L + G + + V+T + Sbjct: 297 PFKKWRGKANEAMKLLRKVLRRGRAALEADV---------RAMRPHIEVLTGVARDTLAR 347 Query: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR 398 + L F D+ L + G + AA+ R+ +DE+QDT P Q I Sbjct: 348 AQSRRLEENRLSFSDLEHLAHELLAKDEG--VRAALHARYRYVFVDEYQDTSPIQDAIVD 405 Query: 399 RIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK-----ARSEVHAHYTLDTNWRSAPGM 453 + P L L+GD KQ+IY FR A+ ++ A + L N+RS G+ Sbjct: 406 AVA---PPGGLFLVGDVKQSIYGFRMAEPGLFLARYRRYAEKDGGEAIDLSANYRSRSGI 462 Query: 454 VNSVNKLFSQTDDAF-----------MFREIPFIPVKSAGKNQALRFVFKG--------- 493 V VN LF Q A M E + ++ F G Sbjct: 463 VRFVNYLFGQLFHADVAGFDYADGHEMKPEAAYPDDDGGPCPVKIKLFFSGDAGNDRVEE 522 Query: 494 -ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRAS 552 E + + + A A QI L+ ++ RP+R Sbjct: 523 TEEPERADAKGEDEDEQVAREKLEIEAMWVADQIARALE--RQERVYDRAAKAYRPLRYQ 580 Query: 553 DISVLVRSRQE-AAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENT 611 D+++L+R+ E V L IP+V S+ F +E + + LL A+ P Sbjct: 581 DVAILLRAGGENLNTVVQVLASRGIPAVARSSS-GFFRAMEIRWAVSLLTALDNPLDSLA 639 Query: 612 LRSALATSMMGLNALDIETLN--------------------NDEHAWDVVVEEFDGYRQI 651 L +AL + +GL+ D+ A + VE + +R + Sbjct: 640 LAAALKSPFVGLSDDDLAAARIACPRGPLWHAVREAARDTEGARDALRLAVERLERWRGL 699 Query: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWL 711 +LR + I L A G R ++ + L Q + + + Sbjct: 700 AHTLAPGDLLREIAREVEIDLYLRAMPRGLARAANLEQLIRLAQSHAPHAGDLYRFLAMV 759 Query: 712 SQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFY--- 768 + + V ++TIH SKGLE+P V++ + + Sbjct: 760 RGLEEADVDLGHAH----GASADSVAVMTIHGSKGLEFPHVYVLCLGRQFPHNKRTLALH 815 Query: 769 --------HDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 + AE+ R+LYVALTR+ L Sbjct: 816 RRLGIGATMCDVQTGVHWRTVPSIAVDQANLEASRAEEARVLYVALTRAKERLVLVGHAG 875 Query: 821 VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 880 + + + L A+ + + D + A Sbjct: 876 KVAKLADAAEGHDDEGRLTPEAFLKGNSYASWILPALMRHPDGAWLRKEAGDARAALLDA 935 Query: 881 NDVS-------------------------TAELNAKTLQRLPGDNW----------RVTS 905 V A+ ++R W RV S Sbjct: 936 PGVRFELEVEVDGRPQGQESGEPRSSLFKAPLPPAEEVERELRRLWQGPAWRYRAVRVAS 995 Query: 906 Y---SGLQQRGHGIAQDLMPRLDVDAA-----GVASVVEEPTLTPHQFPRGASPGTFLHS 957 S + A D+ SV+E+P G H+ Sbjct: 996 EQRGSRVSLPSKLTATDIRRLFAERELRARGRHAGSVLEDPAFVRQSGASPRERGVAFHA 1055 Query: 958 LFEDLDFTQPVDPNWVREK----LELGGFESQWEPVLT-EWITAVLQAPLNETGVSLSQL 1012 + +P+ VR LE G + + L + + A +PL L Sbjct: 1056 FMQRAPMQPYANPDDVRRAAQALLEQGLLDERMASALDPDDVLAFFASPLGRRV-----L 1110 Query: 1013 SARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH 1072 +A E F+ + +Q +++G ID + R Sbjct: 1111 AAGEVYREQPFFYRLDVRAGDAQAP----------------------VVVQGVIDCLIRD 1148 Query: 1073 EGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYE 1132 Y ++DYK++ + + S + A Y+ Q Y A+ + Y Y Sbjct: 1149 ARGYAVIDYKTDQVRDASD---LDRLVRA-----YEPQVATYAAAVREAVGTEPEVYLYF 1200 Query: 1133 HH 1134 H Sbjct: 1201 VH 1202 >UniRef50_A3UEQ4 Helicase, UvrD/Rep family protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UEQ4_9RHOB Length = 1219 Score = 528 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 203/1224 (16%), Positives = 385/1224 (31%), Gaps = 185/1224 (15%) Query: 9 DPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68 +EA+AG+GKT + RLLL + +L VTFT+AA Sbjct: 18 QATAADPSASVFVEANAGSGKTRVLVDRVARLLL---------AGARPDRILCVTFTKAA 68 Query: 69 TAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFT 128 E++ R+ + + T + +A + A + T Sbjct: 69 AGEMQARLFRKLGDWSTLPDDALTKELDALVTEGQRPPLDEARRLFARALETPGGLKIQT 128 Query: 129 IHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRRHCYPLPREIAQVVFET 186 +H FC+ +L E+G+ ++ +D S L+ +A + EIAQ + Sbjct: 129 LHAFCESLLRRFPLEAGLPPGFEVQDDASGLALQTEALEALSGQAHRDPEGEIAQAIAAL 188 Query: 187 WKGP-QALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARI---------DTVKQQW 236 G L ++ ++ + + A +L + Q + + + W Sbjct: 189 IDGSGADALARLSAFVMSKRHELMAARTQAGSLDALLDQASELLGVDPDLDVDQVLAEAW 248 Query: 237 RD-AVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLE 295 D VG L+A + + K ++++ ++ + E+ ++ L+ Sbjct: 249 GDTDVGALEAALSALQTGGTKTDQASAEALLEILDVAEEDSAEAFDYYIDFLTTKTGALK 308 Query: 296 DRT----KAGGETPRHPLF--------------EAIDQLLAEPLSIRDLVITRALAEIRE 337 K G++ R + E + +L A + R + Sbjct: 309 KPKSIYSKKTGDSYRILVTLFGDEGAEIHRVGDEVLPKLAAATANRMTRAALRIADALLN 368 Query: 338 TVAREKRRRGELGFDDMLSRLDSALRS-ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRI 396 R + F D++ R + L E+ + ++DE QDT P+Q+ + Sbjct: 369 DYQARLNRLRRVDFSDLVERARALLTDSEARGWALYKLDQGLDHVLVDEAQDTAPEQWAV 428 Query: 397 FRRIWHH--------------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH---- 438 + + +GD KQ+IY+F+ AD ++ R + Sbjct: 429 INALTEEFFAGDGAYETSHPDALRRTVFCVGDEKQSIYSFQNADPREFLAQRQRLQTEAK 488 Query: 439 ------AHYTLDTNWRSAPGMVNSVNKLFS-----------------------------Q 463 L+ ++RS+P ++ +V+ F+ Q Sbjct: 489 LARLRFESPPLNVSFRSSPEVLAAVDACFAAEAAVLNTERKDLVEGLETKLLMSDPETQQ 548 Query: 464 TDDAFMFREIPFI---PVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQ 520 T D F V + G + V K E ++ L ++ ++ +A+ Sbjct: 549 TRDPLAFHRYDGHVAARVNAPGCVEIWPAVPKPEGGQEDELDLRPVDAERKDSARNQLAE 608 Query: 521 VCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEA-AQVRDALTLLEIPSV 579 A++I D + G G RP A DI VLVR R ++ L L +P V Sbjct: 609 AVASEIADIITRGD-GVWEEGKPWRLRPAHAGDILVLVRRRGGLFEEIIRRLKLKNVP-V 666 Query: 580 YLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMG--------LNALDIETL 631 ++R ++ + L +++L L + + PE + +L L + ++ + L Sbjct: 667 AGADRMTLPDQLVVEDLLSLARFALLPEDDLSLAEVLKSPFFHPVRAVTPPIDDDALFDL 726 Query: 632 -------------NNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSAR-----NIAEN 673 +D+ + + R ++ + Sbjct: 727 SRQPGARLWDKLRRSDDPRFRDARAALETARARVETDAPYAFFARFLTETSPTGESRLAR 786 Query: 674 LLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDK 733 L A G E R ++ L S V ++A + +E+ + Sbjct: 787 LYARLGEEARDPAEEFLNRALAHEVEGAPSLSRFV-------AAMQADAVQIKREMEAGR 839 Query: 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQE--QAFYHDRHSFEAVLDLNAAPESV---- 787 V+++T+H +KGLE P+V+LP T F H+ D+ P + Sbjct: 840 GEVRVMTVHGAKGLEAPIVFLPDTTQLPRDRSGGLFAHEEAGLLWSPDMKMPPPLLASIA 899 Query: 788 DLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP 847 + E + E RLLYVA+TR+ + K H Sbjct: 900 ERKELDADGEYQRLLYVAMTRARDRLIVCG--HTHGVAGKVDAGSWHDRCQHSWTGAD-- 955 Query: 848 QDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYS 907 ++T +E + ++ W+ A + + A + W + Sbjct: 956 --WRPVKTALEGVAAEN-GWEAAP---GLRYGADPKPLKASAAPEAAPVTLPGWAIQPPP 1009 Query: 908 GLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQP 967 +A + + AS+ +F R G +H L + L + Sbjct: 1010 ADPAPVRSVAPSKLLGEEESGFEPASLSPLAKGGQSRFRR----GELIHKLLQTLPDIEE 1065 Query: 968 VDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPI 1027 + + L R E Sbjct: 1066 SRREASALRYLENQTD-------------------------LDDAQRREIASE------T 1094 Query: 1028 SEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGM-LKGFIDLVFRHEGRYYLLDYKSNWL 1086 + L + A GM + G ID + + ++DYK+N Sbjct: 1095 LRVISDPTFAALFQPGSRAEAAVAGQAAGLPGGMVINGQIDRLVVTDHEVLIVDYKTNRP 1154 Query: 1087 GEDSSAYTQQAMAAAMQAHRYDLQ 1110 +A A M A+R LQ Sbjct: 1155 PPQKVEDVPRAYLAQMAAYRALLQ 1178 >UniRef50_B2KE90 UvrD/REP helicase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE90_ELUMP Length = 1074 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 209/1169 (17%), Positives = 422/1169 (36%), Gaps = 164/1169 (14%) Query: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60 ++D+ + + ++EA AGTGKT + + L++ + ++VE ++ Sbjct: 4 ITDLQTRYEASTVT-DRNIVVEAGAGTGKTTLLISRLCYLMI--------VKNISVERIV 54 Query: 61 VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ 120 +TFTE A AE++ R+ + + ++ CL T + + LL + K + Sbjct: 55 ALTFTEKAAAEIKIRLSAQLQKIIKECLSVTQKDKITLELLAHL-SKEEIIIRAQRVLEF 113 Query: 121 MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA 180 ++ + TIHGFC +L E+G+ + DE R W + Sbjct: 114 LERGFISTIHGFCSYILKAYPVEAGISPSAVV--DEGQRRETVFKRLWNKWLEEELGGGG 171 Query: 181 QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 E WK +L++IN A D HA++++ + + + + Sbjct: 172 PK-EEIWKR---VLKEINLEDLYNYAFDMAGGKIDAYHPMSHAKVLSGVCFENAKIAEQM 227 Query: 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA 300 + + G R+ A I + +A+A +E + D+ K Sbjct: 228 SCV--FLPPGGKSRKIERALASASIILQEAAFAFKEGK--FQKTENPGPEKLSSSDQAKG 283 Query: 301 GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREK---RRRGELGFDDMLSR 357 + +D R ++I A + + V + +G + FDD+L + Sbjct: 284 WDDENFETAVRIVD-FARSLYPDRQMLIADAFSLVSPFVNNARDTFEAQGLISFDDLLVK 342 Query: 358 LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ-----------------YRIFRRI 400 + L++ ++ +A++ +F + IDEFQDTDP Q + + Sbjct: 343 TRTLLKN--NLIVRSALKKQFEIIFIDEFQDTDPVQGELLLFLAEEEKSAAKVWNEIKL- 399 Query: 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKAR----SEVHAHYTLDTNWRSAPGMVNS 456 L ++GDPKQ+IY FRGADI Y + L TN+RS +++ Sbjct: 400 ----APGKLFVVGDPKQSIYRFRGADITAYQLFTELILKQGGMICYLQTNFRSDAQIIDF 455 Query: 457 VNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 VN + + + ++P+ + + K + + + DY+ Sbjct: 456 VNCAGFKLIEERPGFQAKYVPINAKDGAPCDKDAVKD-------VIISSEQPQSADDYRH 508 Query: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 A+ A I + A + + ++ DI+VL+R+ +AL + Sbjct: 509 NQAEFTAKWIAE--------NAGKLKLSNGSVLQYKDIAVLMRTSNAFNIFTEALKRYGV 560 Query: 577 PSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE- 635 ++ + + E ++L LL + P +N L L + G N +I + + Sbjct: 561 KYTVEEDK-NFYTAQEITDILNLLSLLDNPYDKNALAGVLRSPFGGFNDDEIYQIFKQKF 619 Query: 636 ------------HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERR 683 + + + + ++ ++S+ AE GE+ Sbjct: 620 TDISAKKLPKGFERLGGFYKTLNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQT 679 Query: 684 LTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESD-KHLVQIVTIH 742 ++++ + L AG Q E+ ++L ++L+ + L + V ++TIH Sbjct: 680 ISNLQKFAALA--AGDQNENANSLGQFLANSKDLARQARGEGESPLADEFLSAVSVMTIH 737 Query: 743 KSKGLEYPLVWLPFITNFRVQEQ-----AFYHDRHSFEAVLDLNAAPESVDLAEA-ERLA 796 KSKGLE+P+V+L + +Q ++++D H A +A +++ + + Sbjct: 738 KSKGLEFPVVFLADMFRQESVKQNKYSYSWFYDMHGLRAGPYADANLAFLEVQQLWHSKS 797 Query: 797 EDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC 856 E+ R+LYVALTR+ + K + + L L + L Sbjct: 798 EEARILYVALTRAKEKLFILG---NNTETKKTPARHLRNAGLWPELVTVKELPNDKLTHP 854 Query: 857 IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTS--YSGLQQRGH 914 ++ + + D +++N + + + W S Y +++ Sbjct: 855 LQ------LEYFPYAEPDQFIYKIN-FTPEDGGVLKNAGEWFNRWAKRSEIYEKIKEEAL 907 Query: 915 GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVR 974 I+ + + + AG + A GT H + E+ DF + P Sbjct: 908 FISPSSLNKHEAVFAGSSDN-------------AALLGTLCHKMLENYDFKTVITPEQTA 954 Query: 975 EKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIAS 1034 E ++ E + ++E L+ + EM F Sbjct: 955 ASAASLQIEDN--DIIKEAAEIINNFTVSEVCKKLASMRVLA--REMPFT---------- 1000 Query: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYT 1094 + + ++ G +D++ EG ++LDYK++ + Sbjct: 1001 --------------------YFEEGKIISGTVDVIVEQEGEIFVLDYKTDKTPDP----- 1035 Query: 1095 QQAMAAAMQAHRYDLQYQLYTLALHRYLR 1123 +Y LQ Y A+ + + Sbjct: 1036 ----------SKYALQLGAYKRAVKKIMG 1054 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.141 0.415 Lambda K H 0.267 0.0434 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,426,064,176 Number of Sequences: 3077464 Number of extensions: 281338121 Number of successful extensions: 1026794 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3382 Number of HSP's successfully gapped in prelim test: 3232 Number of HSP's that attempted gapping in prelim test: 975354 Number of HSP's gapped (non-prelim): 23715 length of query: 1180 length of database: 1,040,396,356 effective HSP length: 140 effective length of query: 1040 effective length of database: 609,551,396 effective search space: 633933451840 effective search space used: 633933451840 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 99 (42.7 bits)