Phyre 2 alignment of P0CF64 with c3gn5B_

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Job Description | P0CF64
Confidence | 90.77% | Date | Thu Jan 5 11:31:22 GMT 2012
Rank | 94 | Aligned Residues | 35
% Identity | 6% | Template | c3gn5B_
PDB info | PDB header:dna binding protein | Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); | PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
Resolution | 2.15 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | W | T | G | K | K | V | D | S | A | R | A | L | I | A | R | G | W | G | V | S | L | V | S | R | C | L | R | V | S | R | A | Q | L | H | V | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | V | A | P | E | F | I | V | K | V | R | K | K | L | . | . | S | L | T | Q | K | E | A | S | E | I | F | G | G | G | V | N | A | F | S | R | Y
Template Known Secondary structure |  | S |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | T |  |  |  |  |  |  |  |  |  |  |  | S |  | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |  |  | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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