50 c1vmaA_ Probab=98.08   E-value=0.00013  Score=48.30  Aligned_columns=130  Identities=21%

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf             87787079995766442679999999999985699489998889989999999998629997796337999899999999
Q batch____       220 GLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISG  299 (471)
Q Consensus       220 G~~~G~l~vi~g~pg~GKT~l~l~ia~~~a~~~~~~vl~~slEm~~~~~~~Rl~a~~~~v~~~~i~~~~~~~~~~~~~~~  299 (471)
                      ...++.++++.|++|+|||+.+..+|..++ ..|.+|++++.+.-.---...+                          +
T Consensus        88 ~~~~~~vi~~~Gp~G~GKTTt~aklA~~~~-~~g~~v~li~~D~~R~gA~eQL--------------------------~  140 (294)
T c1vmaA_          88 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQL--------------------------K  140 (294)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHH--------------------------H
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHH--------------------------H
T ss_conf             578966999980688760248999999999-6799489997587686479999--------------------------9


Q ss_pred             HHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             99998511896997089889899999999999611799889991666512678888989999999999999999818949
Q batch____       300 TMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPV  379 (471)
Q Consensus       300 a~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~lvvID~L~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~i  379 (471)
                      ..++.++-.  ++......++..+.......++.. +.++|+||.-...   ....+.-.++..+.+....+.......+
T Consensus       141 ~~a~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~-~~d~IlIDTaGr~---~~d~~~~~el~~~~~~~~~~~~~~p~~~  214 (294)
T c1vmaA_         141 IWGERVGAT--VISHSEGADPAAVAFDAVAHALAR-NKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHET  214 (294)
T ss_dssp             HHHHHHTCE--EECCSTTCCHHHHHHHHHHHHHHT-TCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEE
T ss_pred             HHHHHHCCE--EEECCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             999761982--897488369899999999999977-9989998188898---7857999999999999630356688539


Q ss_pred             EEE
Q ss_conf             999
Q batch____       380 VAL  382 (471)
Q Consensus       380 i~l  382 (471)
                      +++
T Consensus       215 ~LV  217 (294)
T c1vmaA_         215 LLV  217 (294)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             998