50 c2cyaA_ Probab=97.83   E-value=0.00017  Score=50.03  Aligned_columns=198  Identities=14%

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-----CCCC----CCCHHHHHHHHH
Q ss_conf             8887755457656068835845586563456999999999999718859999803-----8776----485579999999
Q batch____        14 QIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDD-----TNPV----KEDIEYVESIKN   84 (554)
Q Consensus        14 ~i~~~dL~~~~~~kVvtRFaPsPtG~LHiGhartal~N~~~Ar~~gG~~iLRieD-----TDp~----R~~~e~~~~I~e   84 (554)
                      ..+++-|+.+..-.|-+=|.|  ||.|||||.-.++..+.+.+. |..+++=|=|     .||.    .....+.+.+..
T Consensus        21 e~l~~~l~~~~~~~iy~G~~P--Tg~lHlG~~i~~~~~~~~~~~-g~~~~~lIaD~~a~~~d~~~~~~~~~~~~~~~~~~   97 (328)
T c2cyaA_          21 EELKGLLASGARIKGYIGYEP--SGVAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRR   97 (328)
T ss_dssp             HHHHHHHHHCSCCEEEEEECC--CSSCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEEECC--CCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             999999854998289980056--883407789999999999977-99389997183565268889998997632999999


Q ss_pred             HHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             99982898978637712648889999999998798256169999999988640157877763489978978989998536
Q batch____        85 DVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAG  164 (554)
Q Consensus        85 dL~wLGl~wd~~v~~qSdr~~~y~~~a~~Li~~G~AY~c~ct~eel~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~g  164 (554)
                      .+..+|+..+....+++.-+....++...+.                            +..+..+.+.....+.....-
T Consensus        98 ~~~a~g~~~~k~~~~~~S~~~~~~~~~~~~~----------------------------~l~~~~~~~~~~~~~~~~~~~  149 (328)
T c2cyaA_          98 VMEAAGVPVERVRFVDAEELASDKDYWGLVI----------------------------RVAKRASLARVRRALAEEAEV  149 (328)
T ss_dssp             HHHHTTCCGGGCEEEEHHHHHTCHHHHHHHH----------------------------HHHHTSCHHHHHTTCCCGGGS
T ss_pred             HHHHCCCCHHHEEEEECCCHHHHHHHHHHHH----------------------------HHHCCCCHHHHHHHHCCCCCC
T ss_conf             9997177945689873630112578999998----------------------------641010299999864046787


Q ss_pred             CCCCCCEEEEEEEEEECCCCEEECCEEEEECCCCCCCCCCCCCCCCHHHCCCHHCCHHCCCCCEECCCCCCCCCHHHHHH
Q ss_conf             63676338998953205886020326788648755334433233201314111110111898303465321481889999
Q batch____       165 GFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWV  244 (554)
Q Consensus       165 ~~~~~~~~lR~K~d~~~~n~~~rD~V~~Ri~~~~h~~~g~k~~~yPtY~fA~~VDD~l~GITHviRg~E~~~~t~~~~~l  244 (554)
                      .....                                         +|-.--+.|-...+.++++.|.|-..+-..-.-+
T Consensus       150 ~~~~~-----------------------------------------~YP~lQaaDil~~~~~i~~~G~DQ~~~~~l~rd~  188 (328)
T c2cyaA_         150 DASKL-----------------------------------------IYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDV  188 (328)
T ss_dssp             CTHHH-----------------------------------------HHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHH
T ss_pred             CHHHH-----------------------------------------HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             49999-----------------------------------------9999875366525898899832222589999999


Q ss_pred             HHHCCCCCCCEEEECCCCCCCC-CEEEHHHHHHHHHCCCCCCCCCC
Q ss_conf             9973888776688523205778-54211444446425842777786
Q batch____       245 LDNITIPVHPRQYEFSRLNLEY-TVMSKRKLNLLVTDKHVEGWDDP  289 (554)
Q Consensus       245 ~~aLg~~~~p~~~~~~rLn~~~-~~lSKRkl~~~v~~g~v~gWDDP  289 (554)
                      .+.|+.+.+..+..+-...++| .||||+      +.+-.=.|+|+
T Consensus       189 ~~~~~~~~~~~i~~pll~~l~G~~KMSkS------~~~s~I~l~D~  228 (328)
T c2cyaA_         189 AEKLGRKKPVAIHTPIISSLQGPVKMSKS------KPETAVFVVDS  228 (328)
T ss_dssp             HTTTTCCCCEEEEECCCBCSSCCCBCCSS------SGGGSCBTTCC
T ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCCC------CCCCEEEECCC
T ss_conf             99729878457751123467787778888------88845883389