HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/eb85fd122e621475/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/eb85fd122e621475/query.hhm DATE Sat Jan 7 20:48:01 2012 LENG 127 match states, 127 columns in multiple alignment FILT 11 out of 13 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.3928 -1.6395 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCHHHHEEEEEEHEEEECCHHHHCCCCCEEEEEECCEEEEEECCC CCCCCCCEEEEEEECCCCEEEEEEECC >ss_conf 9704534879987535799999888742143123331001101058984100124560242012412100100154430249779997188189982047 532248469999974787399998629 >Consensus xxxxxxxxxxxxxxxnxxxvxxxxxxxnxxxqxxxxxkxxxxxxxxxxxxxxxlVxxxexAiklAExxlxxiYGxxxxexqKPYxvxlxxxxWvVxGTxx xxxxxGGVfxIxIrKxDGkILxVxHxK >batch____ MSAEFMVICKKILFRNCVIVSLFVFTYNTWAQCNNNIKIMRKYESEGKYTVRNLVKNKAIALELAEIYVKNRYGQDAAEEEKPYEITELTTSWVVEGTIH SDQIAGGVFIIEIGKNDGRILNFGHGK >UniRef50_A5FGG2(4-115:115) Hypothetical lipoprotein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FGG2_FLAJ1 E=0.0003 s/c=0.41 id=29% cov=87% --------------HNVLLVVFLLIFFNSCSQeKTKSQKVVKSVVDKPNLVFKDLVPDNETAIKIAEAILVPIYGKKIY-KQRPFVATLKSPNvWAVEGT LHTTK--GGVAYIEIQKKDCKILKVYHEK >UniRef50_P33668(9-122:122) Uncharacterized protein ybbC n=13 Tax=Escherichia coli RepID=YBBC_ECOLI E=8e-16 s/c=0.74 id=60% cov=64% -----------------------------------------------KYSVKNTVKTETMAIQLAEIYVRYRYGERIAEEEKPYLITELPDSWVVEGAKL PYEVAGGVFIIEINKKNGCVLNFLHSK >UniRef50_C6V8M1(20-91:91) Putative uncharacterized protein n=3 Tax=Escherichia coli RepID=C6V8M1_ECOBD E=3e-07 s/c=0.79 id=42% cov=57% -----------------------------------------------------LVNSREMALELSYVYIKYVYGKEKAEFQKPYSITDDNNCWKIEGK-- QPKTLGGNFTILIAKKDGQVLHVIHTK >UniRef50_C6X3U0(4-124:124) Putative uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X3U0_FLAB3 E=7e-06 s/c=0.43 id=34% cov=58% -----------------------------------------------------LIKEENTAIKVAEPILFEIYGRSKIEGEKPYEAYLIKNYWVINGTVD RYSF-GGAFSIIIDARNSKVINVIHYK >UniRef50_B2KDJ6(78-147:147) Putative uncharacterized protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDJ6_ELUMP E=0.0006 s/c=0.65 id=35% cov=43% -------------------------------------------------------------------------GQELMSAQKPFKAAGCDNMWVVYGTNE VGTLSGAVHII-LRKQDGKILQVFYEK >UniRef50_B8F9G3(62-139:139) Putative uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9G3_DESAA E=2e-16 s/c=1.11 id=33% cov=39% -------------------------------------------------------------------------------QDKPFVAKLYGDEWLVKGTYv ipddLNEIMRGGVPYAVIRKIDGKILAVTHTR >UniRef50_D1N0G5(264-336:336) Putative uncharacterized protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0G5_9BACT E=4e-16 s/c=1.18 id=31% cov=58% ----------------------------------------------------NLNLSKEDAVKVAETVLVGIYGKEVL-RQRPWRVVESETEFQISGTLA PSSV-GGVAEISIRKSDAGVARYTHGK >UniRef50_C6M7N1(29-96:96) Putative lipoprotein n=2 Tax=Neisseria RepID=C6M7N1_NEISI E=6e-07 s/c=0.81 id=36% cov=50% -------------------------------------------------------------LRLTEIYVTQHYGEQTAQAQKPYRVKKDGEHWVISGK-- PPKALGGNFRAVIGA-NGQLEEITHSK >UniRef50_D1PST3(57-142:142) Putative uncharacterized protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PST3_9BACT E=4e-18 s/c=1.07 id=31% cov=65% -------------------------------------------DNEGANPDSGFIPNAKVAYEVAIAVLKPIYGHYV-DKEKPYKVVLDSKrYWIITGSK DSIS-KGGVAEVTLRKSDGRVIMVTHGK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 A 3 0 * * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 E 4 * * * 0 * * * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 F 5 * * * * 0 * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 M 6 * * * * * * * * * * 0 * * * * * * * * * 6 0 * * * * * * 1000 0 0 V 7 * * * * * * * * * * * * * * * * * 0 * * 7 0 * * * * * * 1000 0 0 I 8 * * * * * * * 0 * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 C 9 * 0 * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 K 10 * * * * * * * * 0 * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 K 11 * * * * * * * * 0 * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 I 12 * * * * * * * 0 * * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 1000 0 0 F 14 * * * * 0 * * * * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 R 15 * * * * * * 1039 * * * * * * * 962 * * * * * 15 0 * * * * * * 1613 0 0 N 16 * * * * * * * * * * * 0 * * * * * * * * 16 0 * * * * * * 1613 0 0 C 17 * 962 * * * * * * * * * * * * * * * 1039 * * 17 0 * * * * * * 1613 0 0 V 18 * * * * * * * * * 1039 * * * * * * * 962 * * 18 0 * * * * * * 1613 0 0 I 19 * * * * * * * 962 * 1039 * * * * * * * * * * 19 0 * * * * * * 1613 0 0 V 20 * * * * * * * * * * * * * * * * * 0 * * 20 0 * * * * * * 1613 0 0 S 21 * * * * * * * * * * * * * * * 962 * 1039 * * 21 0 * * * * * * 1613 0 0 L 22 * * * * 1039 * * * * 962 * * * * * * * * * * 22 0 * * * * * * 1613 0 0 F 23 * * * * 962 * * * * 1039 * * * * * * * * * * 23 0 * * * * * * 1613 0 0 V 24 * * * * * * * * * 1039 * * * * * * * 962 * * 24 0 * * * * * * 1613 0 0 F 25 * * * * 962 * * 1039 * * * * * * * * * * * * 25 0 * * * * * * 1613 0 0 T 26 * * * * 1039 * * * * * * * * * * * 962 * * * 26 0 * * * * * * 1613 0 0 Y 27 * * * * 1039 * * * * * * * * * * * * * * 962 27 0 * * * * * * 1613 0 0 N 28 * * * * * * * * * * * 0 * * * * * * * * 28 0 * * * * * * 1613 0 0 T 29 * * * * * * * * * * * * * * * 1039 962 * * * 29 0 * * * * * * 1613 0 0 W 30 * 1039 * * * * * * * * * * * * * * * * 962 * 30 0 * * * * * * 1613 0 0 A 31 962 * * * * * * * * * * * * * * 1039 * * * * 31 0 * * * * * * 1613 0 0 Q 32 * * * * * * * * * * * * * 0 * * * * * * 32 962 1039 * 0 * * * 1613 1000 0 C 33 * 962 * * * * * * 1039 * * * * * * * * * * * 33 0 * * * * * * 1613 0 0 N 34 * * * * * * * * * * * 962 * * * * 1039 * * * 34 0 * * * * * * 1613 0 0 N 35 * * * * * * * * 1039 * * 962 * * * * * * * * 35 0 * * * * * * 1613 0 0 N 36 * * * * * * * * * * * 962 * * * 1039 * * * * 36 0 * * * * * * 1613 0 0 I 37 * * * * * * * 962 * * * * * 1039 * * * * * * 37 0 * * * * * * 1613 0 0 K 38 * * * * * * * * 0 * * * * * * * * * * * 38 0 * * * * * * 1613 0 0 I 39 * * * * * * * 962 * * * * * * * * * 1039 * * 39 0 * * * * * * 1613 0 0 M 40 * * * * * * * * * * 962 * * * * * * 1039 * * 40 0 * * * * * * 1613 0 0 R 41 * * * * * * * * 1039 * * * * * 962 * * * * * 41 0 * * * * * * 1613 0 0 K 42 * * * * * * * * 962 * * * * * * 1039 * * * * 42 0 * * * * * * 1613 0 0 Y 43 * * * * * * * * * * * * * * * * * 1039 * 962 43 0 * * * * * * 1613 0 0 E 44 * * 1585 1547 * * * * * * * * * * * * * 1624 * * 44 0 * * * * * * 2004 0 0 S 45 * * 2140 * * * * * * * * 1878 * * * 1841 2172 * * * 45 0 * * * * * * 2165 0 0 E 46 * * * 859 * * * * 2140 * * 2172 * * * * * * * * 46 0 * * * * * * 2165 0 0 G 47 * * 2172 * * 859 * * * * * * 2140 * * * * * * * 47 0 * * * * * * 2165 0 0 K 48 2047 * * * * * * * 819 * * 2389 * * * * * * * * 48 0 * * * * * * 2290 0 0 Y 49 * * * * * * * * * 2389 * 2047 * * * * 2507 * * 1354 49 0 * * * * * * 2290 0 0 T 50 * * * * * * * * * * * * 2047 * * 1423 2365 2389 * * 50 0 * * * * * * 2290 0 0 V 51 2507 * 2047 * 2389 * * * * * * * * * * * * 1354 * * 51 0 * * * * * * 2290 0 0 R 52 * * * * * * * * 1366 * * * * * 2365 1259 * * * * 52 0 * * * * * * 2290 0 0 N 53 * * 1759 * * 2425 * * * * * 948 * * * * * * * * 53 0 * * * * * * 2467 0 0 L 54 * * * * 2899 * * * * 647 * * * * * * 3080 * * 3196 54 0 * * * * * * 2862 0 0 V 55 * * * * * * * 1879 * * * 2816 * * * * * 771 * * 55 0 * * * * * * 2862 0 0 K 56 * * * * * * * * 1434 2816 * 2847 1520 * * * * * * * 56 0 * * * * * * 2862 0 0 N 57 * * 2220 2860 * * * * * * * 2010 * * * 1831 3080 * * * 57 0 * * * * * * 2862 0 0 K 58 2899 * * 1454 * * * * 1965 * * 3243 * * 2847 * * * * * 58 0 * * * * * * 2862 0 0 A 59 3130 * * 1012 * * * * 2899 * * 2860 * * * * 3080 * * * 59 0 * * * * * * 2862 0 0 I 60 * * 2816 * * * * 3130 * * 1959 * * * * * 1505 2899 * * 60 0 * * * * * * 2862 0 0 A 61 0 * * * * * * * * * * * * * * * * * * * 61 0 * * * * * * 2862 0 0 L 62 * * * * * * * 1640 3366 1550 * * * * * * * 3003 * 3108 62 0 * * * * * * 3021 0 0 E 63 * * * 1604 * * * * 1176 * * * * 3320 2962 * * * * * 63 0 * * * * * * 3021 0 0 L 64 * * * * * * * 2358 * 1179 * * * * * * * 1460 * * 64 0 * * * * * * 3021 0 0 A 65 401 * * * * * * * * * * * * * * 3126 2962 * * * 65 0 * * * * * * 3021 0 0 E 66 * * * 378 * * * 3108 * * * * * * * * * * * 3126 66 0 * * * * * * 3021 0 0 I 67 1685 * * * * * * 1613 * * * * 3028 * * * 3003 3126 * * 67 0 * * * * * * 3021 0 0 Y 68 * * * * * * * 1654 * * * * * * * * * 2054 * 1179 68 0 * * * * * * 3021 0 0 V 69 * * * * * * * 3126 * 1116 * * * * * * * 1613 3366 * 69 0 * * * * * * 3021 0 0 K 70 * * * * 3028 * * * 1604 3366 * * * * 3320 * 2962 2166 * * 70 0 * * * * * * 3021 0 0 N 71 * * * 3028 * 3003 * * * * * 3343 1685 2962 * * * * * 2220 71 0 * * * * * * 3021 0 0 R 72 * * * * * * 2962 840 * * * * * * 2332 * * 3126 * * 72 0 * * * * * * 3021 0 0 Y 73 * * * * * * * * * * * * * * * * * * * 0 73 0 * * * * * * 3021 0 0 G 74 * * * * * 0 * * * * * * * * * * * * * * 74 0 * * * * * * 3225 0 0 Q 75 * * * 1769 * * 3308 * 1728 * * * * 2371 3178 * * * * * 75 0 * * * * * * 3225 0 0 D 76 * * 3554 1613 * * * * 3588 * * * * 3091 2506 3178 * * * 3308 76 0 * * * * * * 3225 0 0 A 77 3554 * * * * * * 1948 2218 3209 * * * * * * 3091 2216 * * 77 154 * 3308 * * * * 3225 0 0 A 78 1281 * * * * * * 2988 * 2927 2789 * * * * * * * * 2424 78 367 * 2155 * * 0 * 3166 0 1000 E 79 * * 2029 1118 * * * * * * * * * 2905 * 2637 * * * * 79 178 * 3106 * * 0 * 3022 0 1519 E 80 2117 * * 2547 3517 3188 * * 2393 * * * * 3331 3164 * * * * * 80 0 * * * * 0 * 3373 0 1000 E 81 * * 3454 1243 * * * * * * * * * 1041 * * * * * * 81 0 * * * * * * 3396 0 0 K 82 * * * * * * * * 289 * * * * * 2460 * * * * * 82 0 * * * * * * 3396 0 0 P 83 * * * * * * * * * * * * 0 * * * * * * * 83 0 * * * * * * 3396 0 0 Y 84 * * * * 1803 * * * * * * * * * * * * * 3224 722 84 0 * * * * * * 3396 0 0 E 85 * * * 2452 * * * * 2239 3660 * * * * 2271 3580 * 2086 * * 85 0 * * * * * * 3396 0 0 I 86 1353 * * * * * * 2056 * * * * * * * * * 1442 * * 86 0 * * * * * * 3396 0 0 T 87 3053 * * * * * * * 2385 * * * * * * 3847 1665 2334 * 3252 87 0 * * * * * * 3396 0 0 E 88 * * 3580 1922 * 3053 * * 3319 1212 * * * * * * * * * * 88 0 * * * * * * 3396 0 0 L 89 * 3053 1862 * * * * 3252 3741 2672 * * * * * 3224 * 3847 * 3454 89 0 * * * * * * 3396 0 0 T 90 * * 3053 3224 * 1938 * * 3252 * * 3580 3660 * * 2590 3684 * * * 90 0 * * * * * * 3396 0 0 T 91 * * 2060 3319 * * * * 3453 * * 1694 3741 * * * 2436 * * * 91 138 3453 * 0 * * * 3396 1000 0 S 92 * 3580 * 2334 * * 3319 * * * 3053 3741 * * * 2143 * * * 2349 92 225 2793 * 0 * * * 3396 1263 0 W 93 * * * * 3224 * * * * * * * * * * * * * 163 * 93 0 * * * * * * 3396 0 0 V 94 2793 * * * * * * 3453 3580 3454 * * * 3224 * * * 1051 * * 94 0 * * * * * * 3396 0 0 V 95 * * * * * * * 1038 * * * * * * * * * 963 * * 95 0 * * * * * * 3396 0 0 E 96 * * 3847 1665 * * * * 3454 * * 3252 * * * 2271 3453 * * 3053 96 0 * * * * * * 3396 0 0 G 97 * * * * * 0 * * * * * * * * * * * * * * 97 0 * * * * * * 3396 0 0 T 98 3660 * * * * * * * 2444 * * * * * * 2637 795 * * * 98 293 * 2444 * * * * 3396 0 0 I 99 * * * * * * * 3432 2247 1712 * 2877 * * * * * 2946 * 2992 99 338 2992 3592 2322 322 * 0 3080 1000 1477 H 100 2829 * 1962 2810 * * 2256 * * 1996 * * * * * * * * * * 100 0 * * * * 0 * 3049 0 1946 S 101 * * * * * * * * * * * 3454 1491 3580 3252 2564 3741 3053 * * 101 0 * * * * * * 3396 0 0 D 102 * * 3684 3454 * 3053 * 3453 3847 * * * 2444 * * 3224 3741 * * 2442 102 0 * * * * * * 3396 0 0 Q 103 * * * 3660 * * * 3454 1608 * * * * 3684 * 1721 3053 * * * 103 262 * 2590 * * * * 3396 0 0 I 104 3201 * * * 3064 * * 3434 3430 2835 3070 * * * * * 3338 2131 * * 104 425 * 1971 * * 983 1017 3226 0 1596 A 105 2196 * * * * * * * 2865 2008 * * * * 2029 2730 * * * * 105 0 * * * * 0 * 2972 0 1951 G 106 * * * * * 0 * * * * * * * * * * * * * * 106 0 * * * * * * 3396 0 0 G 107 3053 * * * * 185 * * * * * * * * * * * * * * 107 0 * * * * * * 3396 0 0 V 108 3252 * * * * * * * * * * 2444 * * * * * 492 * * 108 0 * * * * * * 3396 0 0 F 109 1546 * * * 1166 * 3053 * * * * * 3454 * * * * * * * 109 0 * * * * * * 3396 0 0 I 110 * * * 2334 * * * 1850 * * * * * * 3319 3252 3580 * * 2086 110 0 * * * * * * 3396 0 0 I 111 2385 * * * * * * 480 * * * * * * * * * 3453 * * 111 185 * 3053 * * * * 3396 0 0 E 112 * * * 1502 * * * 3136 * 3234 * * * * * 3109 3209 2302 * * 112 0 * * * * 0 * 3134 0 1000 I 113 * * * * * * * 343 * 2239 * * * * * * * * * * 113 0 * * * * * * 3396 0 0 G 114 3580 * 3252 * * 2490 * * * * * 3660 * 2793 1286 * * * * * 114 0 * * * * * * 3396 0 0 K 115 2285 * * * * * * * 331 * * * * * * * * * * * 115 152 * 3319 * * * * 3396 0 0 N 116 * * * * * * * 3296 1889 * * 2615 * 2952 3084 2199 * * * * 116 0 * * * * 0 * 3255 0 1000 D 117 * * 482 * * * * * * * * 1815 * * * * * * * * 117 0 * * * * * * 3396 0 0 G 118 3224 2793 * * * 635 * * * * * * * * * 3252 * * * * 118 0 * * * * * * 3396 0 0 R 119 * 3660 * * * 3224 * * 1117 * * * * 2444 2564 * * * * * 119 0 * * * * * * 3396 0 0 I 120 * * * * * * * 1205 * 3319 * * * * * * * 1102 * * 120 0 * * * * * * 3396 0 0 L 121 3224 * * 3319 * * * 2349 * 745 * * * * * * * * * * 121 0 * * * * * * 3396 0 0 N 122 3454 * * 3319 * * 3580 * 2793 * 3453 1933 * 3053 3224 * * * * * 122 0 * * * * * * 3396 0 0 F 123 * * * * 2672 * * 3319 * * * * * * * * * 653 * 3224 123 0 * * * * * * 3396 0 0 G 124 * * * * 3053 3684 * 1955 * 3660 * * * * * * 1359 * * 3741 124 0 * * * * * * 3396 0 0 H 125 * * * * * * 185 * * * * * * * * * * * * 3053 125 0 * * * * * * 3396 0 0 G 126 * * * 2356 * 1857 * * * * * * * * * 2007 2516 * * 3252 126 0 * * * * * * 3396 0 0 K 127 * * * * * * * * 138 * * * * * 3454 * * * * * 127 0 * * 0 * * * 3396 0 0 //