BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (318 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 645 0.0 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 313 7e-84 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 286 5e-76 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 285 1e-75 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 267 3e-70 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 244 3e-63 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 224 4e-57 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 223 9e-57 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 217 4e-55 UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding... 214 4e-54 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 206 1e-51 UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coproco... 201 2e-50 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 201 4e-50 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 189 1e-46 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 186 1e-45 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 186 1e-45 UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostri... 177 4e-43 UniRef50_C7GGA9 ABC transporter periplasmic-binding protein YtfQ... 176 1e-42 UniRef50_C2HAH9 ABC superfamily ATP binding cassette transporter... 169 1e-40 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 167 3e-40 UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ... 167 6e-40 UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional... 166 8e-40 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 166 1e-39 UniRef50_B6FKZ7 Putative uncharacterized protein n=1 Tax=Clostri... 165 2e-39 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 160 4e-38 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 154 3e-36 UniRef50_C0CVX1 Putative uncharacterized protein n=1 Tax=Clostri... 152 2e-35 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 151 3e-35 UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional... 143 1e-32 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 140 5e-32 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 136 8e-31 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 136 1e-30 UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostri... 135 2e-30 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 134 4e-30 UniRef50_A8RMQ4 Putative uncharacterized protein n=1 Tax=Clostri... 134 6e-30 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 130 5e-29 UniRef50_C0BVF8 Putative uncharacterized protein n=1 Tax=Bifidob... 130 5e-29 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 129 1e-28 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 129 1e-28 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 127 4e-28 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 126 1e-27 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 122 2e-26 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 118 3e-25 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 117 7e-25 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 116 9e-25 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 116 1e-24 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 115 1e-24 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 115 2e-24 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 115 2e-24 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 113 8e-24 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 113 9e-24 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 112 1e-23 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 112 1e-23 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 112 2e-23 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 112 2e-23 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 111 3e-23 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 111 4e-23 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 110 9e-23 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 109 1e-22 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 108 2e-22 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 108 2e-22 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 107 5e-22 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 107 6e-22 UniRef50_C8XIB8 Periplasmic binding protein/LacI transcriptional... 107 7e-22 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 106 1e-21 UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional... 106 1e-21 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 106 1e-21 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 104 4e-21 UniRef50_B0G4U6 Putative uncharacterized protein n=5 Tax=Clostri... 104 4e-21 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 104 4e-21 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 104 4e-21 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 104 4e-21 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 103 6e-21 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 103 8e-21 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 103 1e-20 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 102 1e-20 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 102 1e-20 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 102 2e-20 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 101 3e-20 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 100 6e-20 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 100 7e-20 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 100 7e-20 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 100 7e-20 UniRef50_C4L3Z3 Periplasmic binding protein/LacI transcriptional... 100 1e-19 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 99 1e-19 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 99 1e-19 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 99 2e-19 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 98 3e-19 UniRef50_B1G538 ABC-type sugar transport system periplasmic comp... 98 3e-19 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 98 4e-19 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 98 5e-19 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 98 5e-19 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 97 1e-18 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 96 2e-18 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 96 2e-18 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 96 2e-18 UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostri... 95 3e-18 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 95 3e-18 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 95 3e-18 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 94 5e-18 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 94 6e-18 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 94 7e-18 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 93 1e-17 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 93 1e-17 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 93 1e-17 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 93 1e-17 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 92 2e-17 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 92 2e-17 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 92 2e-17 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 92 2e-17 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 92 3e-17 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 92 3e-17 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 92 3e-17 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 91 4e-17 UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 T... 91 5e-17 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 91 7e-17 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 91 8e-17 UniRef50_C2AKV1 Monosaccharide ABC transporter substrate-binding... 90 1e-16 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 90 1e-16 UniRef50_Q3DJE8 Ribose ABC transporter, periplasmic D-ribose-bin... 90 1e-16 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 90 1e-16 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 90 1e-16 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 89 1e-16 UniRef50_C2FUL1 Putative uncharacterized protein n=1 Tax=Sphingo... 89 2e-16 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 89 3e-16 UniRef50_Q2RKM1 ABC transporter substrate-binding protein n=3 Ta... 88 4e-16 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 88 4e-16 UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional... 88 5e-16 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 88 5e-16 UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin... 87 6e-16 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 87 6e-16 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 87 6e-16 UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta... 87 6e-16 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 87 7e-16 UniRef50_D1BD03 Monosaccharide-binding protein n=9 Tax=Actinomyc... 87 7e-16 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 87 8e-16 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 87 9e-16 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 86 1e-15 UniRef50_C0B6P5 Putative uncharacterized protein n=1 Tax=Coproco... 86 1e-15 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 86 2e-15 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 86 2e-15 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 86 2e-15 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 86 2e-15 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 86 2e-15 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 85 3e-15 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 85 3e-15 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 85 3e-15 UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional... 85 4e-15 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 84 5e-15 UniRef50_C5C2C6 Periplasmic binding protein/LacI transcriptional... 84 6e-15 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 83 1e-14 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 83 1e-14 UniRef50_A6WEF2 Periplasmic binding protein/LacI transcriptional... 83 2e-14 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 82 2e-14 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 82 2e-14 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 82 2e-14 UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_... 82 2e-14 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 82 2e-14 UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional... 82 2e-14 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 82 2e-14 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 82 2e-14 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 82 3e-14 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 82 3e-14 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 81 4e-14 UniRef50_UPI000169B225 ABC transporter, periplasmic ribose/sugar... 81 4e-14 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 81 5e-14 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 81 5e-14 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 80 7e-14 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 80 7e-14 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 80 8e-14 UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro... 80 1e-13 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 80 1e-13 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 80 1e-13 UniRef50_Q89KM1 ABC transporter substrate-binding protein n=1 Ta... 80 1e-13 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 80 1e-13 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 79 1e-13 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 79 2e-13 UniRef50_A8W015 Rcorf44 n=7 Tax=Alphaproteobacteria RepID=A8W015... 79 2e-13 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 79 2e-13 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 79 2e-13 UniRef50_D2PTU2 Periplasmic binding protein/LacI transcriptional... 79 2e-13 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 79 3e-13 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 79 3e-13 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 78 4e-13 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 78 4e-13 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 78 4e-13 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 78 4e-13 UniRef50_B1G3A1 Periplasmic sugar binding protein-like protein n... 78 4e-13 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 78 4e-13 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 78 5e-13 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 78 5e-13 UniRef50_B1M7C3 Sugar ABC transporter, periplasmic sugar-binding... 77 9e-13 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 77 9e-13 UniRef50_A1WMZ2 Periplasmic binding protein/LacI transcriptional... 77 1e-12 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 76 1e-12 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 76 1e-12 UniRef50_A0LST2 Periplasmic binding protein/LacI transcriptional... 76 1e-12 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 76 1e-12 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 76 2e-12 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 75 2e-12 UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostri... 75 2e-12 UniRef50_B1ZDA2 Periplasmic binding protein/LacI transcriptional... 75 3e-12 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 75 4e-12 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 75 4e-12 UniRef50_D0B1Z2 Periplasmic binding protein/LacI transcriptional... 74 5e-12 UniRef50_C3KNR3 Ribose ABC transporter, ribose-binding protein n... 74 5e-12 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 74 6e-12 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 74 7e-12 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 74 7e-12 UniRef50_D1N9K7 Periplasmic binding protein/LacI transcriptional... 74 7e-12 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 74 7e-12 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 74 8e-12 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 74 8e-12 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 74 8e-12 UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional... 74 9e-12 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 74 9e-12 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 74 9e-12 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 73 1e-11 UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional... 73 1e-11 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 73 1e-11 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 73 1e-11 UniRef50_C0CSY8 Putative uncharacterized protein n=1 Tax=Clostri... 73 1e-11 UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactob... 72 2e-11 UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter... 72 3e-11 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 72 3e-11 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 72 3e-11 UniRef50_A6FAX6 Putative uncharacterized protein n=1 Tax=Moritel... 72 3e-11 UniRef50_Q92YT4 ABC transporter, periplasmic solute-binding prot... 71 4e-11 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 71 5e-11 UniRef50_C0C038 Putative uncharacterized protein n=1 Tax=Clostri... 71 5e-11 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 71 6e-11 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 71 6e-11 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 70 9e-11 UniRef50_Q67RD5 Ribose ABC transporter ATP-binding protein n=7 T... 70 9e-11 UniRef50_A5ZT86 Putative uncharacterized protein n=1 Tax=Ruminoc... 70 9e-11 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 70 1e-10 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 70 1e-10 UniRef50_B9J8H1 Fructose ABC transporter n=23 Tax=Bacteria RepID... 70 1e-10 UniRef50_C0CRA5 Putative uncharacterized protein n=1 Tax=Blautia... 69 1e-10 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 69 2e-10 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 69 2e-10 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 69 2e-10 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 69 2e-10 UniRef50_C8NCI4 Ribose ABC superfamily ATP binding cassette tran... 69 2e-10 UniRef50_Q1AZ05 Periplasmic sugar binding protein-like protein n... 69 3e-10 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 69 3e-10 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 69 3e-10 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 69 3e-10 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 68 3e-10 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD Sbjct: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS Sbjct: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN Sbjct: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK Sbjct: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL Sbjct: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 Query: 301 YLPDTAKEELEKKKNMGY 318 YLPDTAKEELEKKKNMGY Sbjct: 301 YLPDTAKEELEKKKNMGY 318 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 313 bits (801), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 163/295 (55%), Positives = 213/295 (72%), Gaps = 7/295 (2%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 P+ +GFSQVG+ES WR A T KS A GI LK +D QQKQENQIKA+RSF+AQ VD Sbjct: 31 PIVLGFSQVGAESEWRTANTESIKSAARDAGIELKFSDAQQKQENQIKAIRSFIAQRVDV 90 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +PVV +GWEPVL+EAK A+IPV L DR+++ KD SLY+T + +D + EG+ G WLV Sbjct: 91 IAFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTKDTSLYVTFMGSDFVEEGRKAGRWLV 150 Query: 143 ---KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 K+ G N+VELQGTVG++ AIDRKKGF E +K P KIIRSQ+GDFTR+KGKEV Sbjct: 151 EKMKDAKGD-VNIVELQGTVGSAPAIDRKKGFEEVVKADPKFKIIRSQTGDFTRAKGKEV 209 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 ME+F+KAE G+ I ++YAHNDDM IGAIQAI+EAGLKPGKDI SID V ++AMM Sbjct: 210 MEAFLKAE--GRKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMA 267 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 G+ N +VE +P + A++ K T+P+++ +T+ ++ +TA +E K+K Sbjct: 268 GKLNVTVECSPLLGPQLMAAVKDIKAGKTVPKRI-VTEEGIFPMETAAQEFPKRK 321 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 286 bits (733), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 152/306 (49%), Positives = 206/306 (67%), Gaps = 5/306 (1%) Query: 11 VSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIK 70 V+A+++S A +T+GFSQVG+ES WR A T K+ A+ GI LK +D QQKQENQIK Sbjct: 19 VAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQENQIK 78 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 A+RSF+AQ VD I +PVV +GWEPVL EAK+A+IPV L DRSIDVKD SLY+T + +D Sbjct: 79 AIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVKDTSLYVTMIGSDF 138 Query: 131 ILEGKLIGDWLVKEVNGK--PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQS 188 + EG+ G WL + + P N+ ELQGTVG++ A DR G E IKN P KII SQS Sbjct: 139 LEEGRRAGRWLEERYKNEAGPINIAELQGTVGSAPANDRHAGLMEVIKNDPKFKIIASQS 198 Query: 189 GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSID 248 GDFT + GK+VME+F A+ GK I +VYAHNDDM +GAIQA++EAG+KPGKD+ S D Sbjct: 199 GDFTLAGGKQVMEAF--AKTYGKQINVVYAHNDDMALGAIQAMEEAGIKPGKDVSVVSFD 256 Query: 249 GVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 ++AM+ G+ N VE +P + A++ +P+++ +T T++ A + Sbjct: 257 ATKGGFEAMIAGKINVDVECSPLLGPQLMTAVKDVVAGKQLPKRI-VTNETVFPMSVAAQ 315 Query: 309 ELEKKK 314 L ++K Sbjct: 316 ILPQRK 321 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/292 (51%), Positives = 204/292 (69%), Gaps = 7/292 (2%) Query: 26 VGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +GF+QVG+ESGWR AET+ KS LK +DGQQKQENQIKA+RSF+AQ VD I Sbjct: 47 IGFAQVGAESGWRTAETDSIKSIPTLDPNFDLKFSDGQQKQENQIKAIRSFIAQKVDLIA 106 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 + PVV TGW+ VLKEAKDA+IPV ++DR + V D SLY + +D + EGK L+ + Sbjct: 107 LDPVVETGWDTVLKEAKDAKIPVVIVDRKVTVSDDSLYKCFLGSDMVAEGKKAAQILIDQ 166 Query: 145 VNGK--PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 GK N+ ELQGTVG++ + R++GF +AIK+ PN KII+SQ+GDFTR+KGKEVME+ Sbjct: 167 F-GKDATLNIAELQGTVGSTAMVGRQQGFNDAIKDCPNYKIIKSQTGDFTRAKGKEVMEA 225 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 F+K++ G I ++++HNDDM +GAIQAI+E G KPGKDI S+DG+ DI++AM+DG+A Sbjct: 226 FLKSD--GDKINVLWSHNDDMAMGAIQAIEEYGKKPGKDIFIVSVDGIKDIFQAMVDGKA 283 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 NA+VE P + GP + K DG E+ +K + +L A EL +K Sbjct: 284 NATVECNP-LLGPQLLEVAKNILDGKEVERTINSKESQFLQKDAAAELPNRK 334 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 140/270 (51%), Positives = 181/270 (67%), Gaps = 6/270 (2%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 + VGFSQ G+ES WR A + ++EAEKR + L ADGQ NQ+ AV F+ +GVD I Sbjct: 46 IVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNNQVNAVNGFITKGVDVI 105 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 IAP + GW+P LKEAK A IPV L R +D ++ LY T + AD + EG+ G+WL K Sbjct: 106 VIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDA-EEDLYETVMVADFVWEGRRAGEWLAK 164 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 + NGK ++EL GT A VA+ RK GFAEAI P++KII SQSGDFTR+KGK VME+ Sbjct: 165 QTNGK-ARIIELVGTPAADVAVMRKTGFAEAIAKHPDMKIIASQSGDFTRTKGKTVMETL 223 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 + A I VYAHNDDM +GAIQAI+ AGLKPG+DIL SID V ++AMM+G+ N Sbjct: 224 LSAHKG--EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVKPAFEAMMEGKLN 281 Query: 264 ASVELTPNMAGP-AFDALEKYKKDGTMPEK 292 A+VE P M GP FD ++K + +P++ Sbjct: 282 ATVECNP-MHGPLLFDTIDKIVRGEKVPKR 310 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/296 (47%), Positives = 182/296 (61%), Gaps = 9/296 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +T+GFSQVG+ES WR A T KS +EK G L AD QQKQENQIKAVR F++Q VD Sbjct: 50 ITIGFSQVGAESDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDV 109 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I IAPV TGWE VL EAKDA+IPV ++DR I V D SL+ V +D EG +WLV Sbjct: 110 IAIAPVTETGWETVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLV 169 Query: 143 KEVNGK----PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + K NVV LQGT+G+S I R KGF + IK N I+ Q+G+FT++KG+E Sbjct: 170 NYMKEKGKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQE 229 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 VMESF+K N +I +V A ND+M GAI A+K AG PGKD+ S D V +K+M+ Sbjct: 230 VMESFLKQYN---DIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMI 286 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 G+ N SVE P + GP L K + EK+ +Y + A++EL ++ Sbjct: 287 AGDMNVSVECNP-LHGPRVAELAKKLMNDEKVEKIQYVDEKVYPAEIAEKELPNRQ 341 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 129/291 (44%), Positives = 186/291 (63%), Gaps = 5/291 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L VGF+Q+G+ES WR A T + A + G+ L ++D QQ+QENQIKA+RSF+AQGVD I Sbjct: 47 LVVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQQQENQIKAIRSFIAQGVDVI 106 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 ++PVV TGW+ V E K A IP+ LLDR+ +V D LY + +D + EG+ + + Sbjct: 107 GVSPVVETGWDEVFAEVKQAGIPLILLDRNANVPD-DLYSVRIGSDFVEEGRRACGEMAR 165 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 ++G+ VV L+GT G++ I R GF E +++ P + II SQSGDF R++GKE M + Sbjct: 166 LLDGQGAIVV-LEGTQGSAPMIGRGTGFQECLQSYPALHIIDSQSGDFIRARGKEEMAAL 224 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 + + +G +I V+A NDDM +GAI+AI+E GL+PG DI SID V ++AM+DG+ N Sbjct: 225 L--QKHGNSIDGVFAQNDDMALGAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKLN 282 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 A++E P + GP F A +G EK +Y DTA +EL K++ Sbjct: 283 ATIECNP-LLGPLFFATALNLANGIPVEKWIKPDEGIYRQDTAAQELSKRE 332 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 188/303 (62%), Gaps = 15/303 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 +T+G+SQ+G++S WRAA T K AE GI L+ ++ + KQENQI+A+RSF+AQ VD I Sbjct: 42 ITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAIRSFIAQKVDII 101 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL-- 141 +P+VATGW+ VLKEAK A+IPV ++DR + D SLY+ + D++ EG+ WL Sbjct: 102 AFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTNDDSLYIMRIGTDSVREGREAFRWLDG 161 Query: 142 -VKEVNGKP------CNVVELQGTVGASVAIDRKKGFAEAIKNAPN---IKIIRSQSGDF 191 ++E KP N+ E++G G+SV R GF +A+ +PN +I+ +Q+ F Sbjct: 162 YMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNKDAYEILVAQNSTF 221 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 + GK+VM +K N I +++A NDDM +GAI+AI+ AGLKPG+DI+ S DG Sbjct: 222 QKDGGKQVMTEMLK--NYKDKIDILFAQNDDMALGAIEAIEAAGLKPGQDIVIVSCDGTR 279 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 I++AM+DG++N +VE P + GP + K G E+ K ++Y + A ++ Sbjct: 280 AIFQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFVKDSVYPAEIAPMAIQ 338 Query: 312 KKK 314 ++K Sbjct: 339 ERK 341 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 129/314 (41%), Positives = 187/314 (59%), Gaps = 13/314 (4%) Query: 4 RLLIVSA-VSAAMSSMALAAPL------TVGFSQVGSESGWRAAETNVAKSEAEKRGIT- 55 +LL+ SA V+ A+S+ +L+ + VGFSQ + WR AETN K EA K T Sbjct: 3 KLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKKTY 62 Query: 56 -LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 I D Q + Q + +A+ VD IF+AP G P L+ A+ A+IP+FL+DR Sbjct: 63 DFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDREA 122 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 + +++ + +D I +G+ +G+WL K +GK ++VEL GT G+SVAIDR KGF A Sbjct: 123 AGRPGEHFVSFLGSDFIAQGRRVGEWLAKATDGK-ASIVELTGTAGSSVAIDRAKGFRNA 181 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 I PN+KII +Q+ DF+R+ VME+ I+A+ G +I VYAHND+M +GAIQA+K A Sbjct: 182 IATYPNMKIIATQTADFSRAAAVRVMENIIQAK--GSDITAVYAHNDEMALGAIQALKSA 239 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 G+KPGKD++ GSIDG +A++ GE SVE P F +E+Y +P ++ Sbjct: 240 GMKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNPRFGPLVFATMEEYFAGKKIPPRII 299 Query: 295 LTKSTLYLPDTAKE 308 L K L+ AK+ Sbjct: 300 L-KDRLFDVTNAKD 312 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 114/270 (42%), Positives = 169/270 (62%), Gaps = 6/270 (2%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 A LTVGF+Q GSES WRAA + KSEAEK+GI L+ D Q +NQ+KA+RSF+A VD Sbjct: 20 AKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFVDAQSNVDNQMKALRSFIADQVD 79 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI +AP+V +GWE VL++AK A IPV ++DR I V D SLY T + +D EG++ +W+ Sbjct: 80 AIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKI-VADPSLYATFIGSDFFKEGQMAAEWI 138 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAE--AIKNAPNIKIIRSQSGDFTRSKGKEV 199 + + K +VELQG G+S A +R++ FA A + +I+ + +F R +G++ Sbjct: 139 LAHADQKR-KIVELQGEPGSSAANERQRAFASTMATHTSDGFRIVARKVANFRRDQGRQA 197 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 M + +G +I +V+AHNDDM +GAI+AI+ G PG+DI+ SID + +A+ Sbjct: 198 MAELLT--THGSDIEIVFAHNDDMALGAIEAIEAVGRSPGRDIMVVSIDAIKTAVEAVAS 255 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTM 289 G+ N +VE P +A+ + GT+ Sbjct: 256 GKLNCTVECNPLFGPKVIEAVVRLTSGGTV 285 >UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RQG9_9CELL Length = 328 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 123/291 (42%), Positives = 179/291 (61%), Gaps = 11/291 (3%) Query: 24 LTVGFSQVGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + VGFSQ+G+ESGWR A T +V S +E+ G L D QQKQENQIKA+R F+AQ VD Sbjct: 46 IRVGFSQLGAESGWRTANTESVKASLSEENGFDLTFVDAQQKQENQIKALRDFIAQDVDV 105 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +PV+ TGW+ VL+E KD+ IPV L+DR++D Y+T + AD EG G+W V Sbjct: 106 IAFSPVIETGWDEVLQEIKDSGIPVVLVDRTVDTTVDDPYVTWIGADFKAEGTTAGEW-V 164 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 KE N + ELQGT+G+ +DR++GF E + + +II SG+FTR++GK +E+ Sbjct: 165 KE-NAPDAKIFELQGTLGSGAQVDREEGFGEVVGD----QIIGKASGNFTRAEGKTAVEA 219 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++A ++ M++ HNDDM +GAI+AI+ AG KPG DI S+DGV D +A++D + Sbjct: 220 ALQAY---PDMTMIFTHNDDMGLGAIEAIEAAGKKPGVDIQIVSVDGVRDGLQALVDKKF 276 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 N VE P + +EK +P K T+ + +EE++ + Sbjct: 277 NYVVECNPVFGDQLAELIEKVAAGEDVP-KETIVIDKAFDQTITQEEVDAR 326 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 172/287 (59%), Gaps = 6/287 (2%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 +G+SQ+ + +R AETN K EAEKRG L + D Q Q+ V +AQ +D + + Sbjct: 91 IGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNIDLLIL 150 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 +P G E L+ AK+ +PV L+DR + Y+T + D + EG+ G+WL K+ Sbjct: 151 SPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVTYIATDFVWEGQAAGEWL-KDK 209 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIK 205 G CN++EL GTVG+S A DR GFA + +KII SQ+G+F RS+G++VME+ ++ Sbjct: 210 TGGTCNIIELTGTVGSSSAQDRATGFAGVVDQNEGMKIIASQTGNFERSEGQKVMENLLQ 269 Query: 206 AENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 265 A +G + V+ HND M +GA+QAIK AG KP +DIL IDG D +K+++ GE +A+ Sbjct: 270 A--HGGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGEMSAT 327 Query: 266 VELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 V +P M GP FD +EK +PE+ T+ + + A+E +E Sbjct: 328 VVSSP-MYGPITFDTVEKILAGQEVPEQ-TIMEGVVVDAGNAQENME 372 >UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6Q1_9FIRM Length = 365 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 166/292 (56%), Gaps = 16/292 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +TVGFSQVG+ES WR A + K K G L D QQKQENQI A+R+F+ Q VD Sbjct: 46 ITVGFSQVGAESDWRTANSQSMKDTFSKENGYDLIFDDAQQKQENQITAIRNFIQQEVDY 105 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL- 141 I +APV TGW+ VL+EAKDA+IPV ++DR +DV D SLY T + D + EG+ +WL Sbjct: 106 ILLAPVTETGWDTVLQEAKDADIPVIIVDRMVDVSDDSLYTTWIGTDALCEGRKAAEWLN 165 Query: 142 ----VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 K + ++ ++QGT+G++ I R KG E + + ++ Q+G+FT++KG+ Sbjct: 166 GFAEAKGIAASDIHIADIQGTIGSTAQIGRTKGLEEGV-DKYGWDLVAQQTGEFTQAKGQ 224 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG-----SIDGVPD 252 EVMES +K + NI +VY ND+ GAI AI+ AG G DI G S D Sbjct: 225 EVMESMLKQYD---NINVVYCENDNEAFGAIDAIEAAGKTVGSDIANGEIMVISFDTTHA 281 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 + ++DG+ VE P + GP + L K + G +KL ++ D Sbjct: 282 GLQDVLDGKIECDVECNP-LHGPRAEELIKKLEAGEDIDKLNYVDEEIFAHD 332 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/324 (39%), Positives = 179/324 (55%), Gaps = 21/324 (6%) Query: 5 LLIVSAVSAAMSSMALAAP------------LTVGFSQVGSESGWRAAETNVAKSEAEKR 52 L+IV SS AP + + + Q+G+ES WR A T K A Sbjct: 15 LVIVGLAGCGASSAPTTAPDAPATGAKTYSDMVLCYPQLGAESDWRTANTASIKETAATL 74 Query: 53 GI-TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLD 111 GI L +D QQKQENQI AVR+ + QGVD I + PVV GW+ VL EAK+A IPV ++D Sbjct: 75 GIKQLVFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIPVIIVD 134 Query: 112 RSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKG 170 RS+ DKSLY T + ++ +LEG+ K + NG ++EL GT G+ A+ R KG Sbjct: 135 RSVSA-DKSLYSTHIGSNMVLEGERAAAEFNKMMPNGGA--ILELSGTTGSGAAVGRAKG 191 Query: 171 FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 + + NI II SQ+G+FTR++ VM++ +K G + ++ HNDDM IG I+ Sbjct: 192 LRNKLNS--NITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFIHNDDMGIGVIEV 249 Query: 231 IKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP 290 +K AG+KPG D+ S+DG ++AM+DG A VE P + GP L +G Sbjct: 250 LKAAGIKPG-DLKIVSVDGTRGGFQAMVDGWFQADVECNP-LLGPQVFELALKLMNGQPV 307 Query: 291 EKLTLTKSTLYLPDTAKEELEKKK 314 E +T T+Y P+ A E L +K Sbjct: 308 EPEVITNETVYYPENAAELLPTRK 331 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 30/327 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-------------LTVGFSQVGSESGWRAAET-NVAK 46 ++++++IV AV A ++ A P + VG SQ GSES WR A T +V + Sbjct: 7 IFRKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKE 66 Query: 47 SEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 + ++ G L + +QKQENQIKA+RSF++Q VD I +P+V GW+ VL+EA++AEIP Sbjct: 67 TLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIP 126 Query: 107 VFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV-----KEVNGKPCNVVELQGTVGA 161 V L+DR I+VKD+SLY V +D + EG+ G WL + N N+V LQGT G Sbjct: 127 VILMDRKINVKDESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGT 186 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 + R +GF E N I+ + DFT +KG+E M + N I ++ + ND Sbjct: 187 TAMFGRTQGFEEIAAKHENWNILEQTNADFTTAKGEEEMRRLL---NTYPEIDVLVSQND 243 Query: 222 DMVIGAIQAIKEAGLKPGK--DILTGSIDGVPDIYKAMMDGEANASVELTPNMAG----- 274 DM GA++AI+ AG G DI S DG + + G N VE P Sbjct: 244 DMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPYQGKYIEEI 303 Query: 275 -PAFDALEKYKKDGTMPEKLTLTKSTL 300 A + + +KD + EK+ K+ L Sbjct: 304 IQALETGQSIEKDNYVEEKVFTQKNVL 330 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/280 (42%), Positives = 158/280 (56%), Gaps = 7/280 (2%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A+ +A PL VGF+Q S + WR AET K A K G L + D Q+ ++ Sbjct: 41 ALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTDANSSNSKQVSDIQ 100 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID---VKDKSLYMTTVTADN 130 + +AQ VD + P PV+ +AK A IPV L+DR +D K Y+T + +D Sbjct: 101 NMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGSDF 160 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 I +G DWLVK GK ++EL+GT GAS A DRKKGF E I P + II SQSGD Sbjct: 161 IDQGHRAADWLVKATGGK-AKIIELEGTTGASAANDRKKGFDEIIAKNPGMTIIASQSGD 219 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 F R KG++VME+ ++A ++ VYAHND+M +GAI AIK AG +PGKDI +IDG Sbjct: 220 FARDKGRQVMETLLQAH---PDVTAVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGT 276 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP 290 A+ GE ASV+ +P A D ++Y K +P Sbjct: 277 KGGMDAIAAGELGASVQSSPFFGPLACDVAQRYAKGEKIP 316 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 160/278 (57%), Gaps = 11/278 (3%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-----LTVGFSQVGSESGWRAAET-NVAKSEAEKRGI 54 M K++L + A +A +SMA+ +T+G++QVG ES WR A T N +E+ G Sbjct: 38 MNKKVLGMLACTAVAASMAVGVSAEGDLITIGYAQVGHESDWRTANTKNYEDVFSEENGY 97 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 L + D Q++AVR+F+ QG+D I IAP+ + GW+ VL+EA+DA IPV + DR I Sbjct: 98 ELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADREI 157 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 + D S+Y V EG G+WL ++++G +++++G+VGAS AI R GFAE Sbjct: 158 EA-DASMYDAWVGTAPYDEGVTAGNWLAEQLDGAEAKILQIEGSVGASAAIGRTDGFAEV 216 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + +++ SQSGDFT+ G+ VMESFIK N+ V ND+ GA+ A+ A Sbjct: 217 MAEHSEWELLDSQSGDFTQDGGQAVMESFIKTYEGQFNV--VVCQNDNEAYGAMDAMDAA 274 Query: 235 GLKP--GKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 G+ G D++ S D D + +DG+ N VE P Sbjct: 275 GITYGVGGDVILISYDATHDGLQYTLDGKINLDVECNP 312 >UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y2_9CLOT Length = 341 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 12/284 (4%) Query: 26 VGFSQVGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 VG SQ+GSES WR A T ++ + +++ G L + +QKQENQIKA+RSF++Q VD I Sbjct: 48 VGVSQIGSESVWRTANTASIQNTFSKENGYFLIFDNARQKQENQIKALRSFISQQVDYIV 107 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 +P+V GW+ VL+EAKDA IPV L+DR + VKD+SLY V +D EG+ G WL Sbjct: 108 FSPIVEDGWDTVLQEAKDAGIPVILMDRKVKVKDESLYTAWVGSDFAEEGQNAGRWLAGH 167 Query: 145 VN-----GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 + G+ N+V LQGT G++ I R +GF N I+ DFT +KG+E Sbjct: 168 LKEEGRAGEEINIVVLQGTNGSTSVIGRTEGFDSVAAQHDNWNILEQADADFTTAKGREE 227 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD--ILTGSIDGVPDIYKAM 257 M+ + + ++I +V + NDDM GA++AI EAG G D I+ S D + + Sbjct: 228 MKKML---HKYEDIDVVVSQNDDMTFGALEAIGEAGQSTGTDGGIILISFDATKSALEKV 284 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 G N +E P G + + + + G EK ++ Sbjct: 285 EQGIINVDIECNPEQ-GAYIEEVIRVLESGGQAEKEYFVSERVF 327 >UniRef50_C7GGA9 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGA9_9FIRM Length = 378 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/283 (38%), Positives = 159/283 (56%), Gaps = 12/283 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRS 74 SS A +T+GF+QVG ES WR A T+ S + G L+ D Q++AVR Sbjct: 63 SSAASGDTVTIGFAQVGHESDWRTASTDSCLSVFSADNGYDLQFVDCDNDSAVQLEAVRG 122 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 F+ Q VD I I P+V+TGW+ VL E ++A IPV ++DR+ID DK Y++ V ++ EG Sbjct: 123 FIEQDVDYIIIDPIVSTGWDTVLTECEEAGIPVIVIDRTIDDSDK--YVSWVGSNFKTEG 180 Query: 135 KLIGDWLVKEVNGK---PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 G+WL + K NV+ ++G+ GAS I R GF E I +A I+ SQ+GDF Sbjct: 181 LAAGEWLKAYTDAKGISDVNVLVIEGSTGASATIGRTDGFKE-IADANGWNILDSQTGDF 239 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG--KDILTGSIDG 249 T++ G+EVMES+IK+ N+ V ND+ GA+ A+K AG+ G D++ S D Sbjct: 240 TQAGGQEVMESYIKSYEGKFNV--VVCQNDNEAFGAMDAMKAAGISYGVDGDVILVSFDA 297 Query: 250 VPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 + +M G+ NA E P +A P + + K + G PEK Sbjct: 298 CTAGLEYVMSGDINADFECNP-LAAPFVEEVIKRLQAGETPEK 339 >UniRef50_C2HAH9 ABC superfamily ATP binding cassette transporter, binding protein n=16 Tax=Enterococcus RepID=C2HAH9_ENTFC Length = 338 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 20/297 (6%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 PL VGFSQ G+ES WR T + EK + +G QE QI+ +R+F+A VD Sbjct: 30 PLVVGFSQSGTESSWRKKHTESIITALEKEDYQVLYRNGYMNQERQIQDIRTFIAYKVDM 89 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I P+ +GW+ VLKEAK AEIPV L++R I D L++T + EG G ++ Sbjct: 90 IIFTPLQESGWDSVLKEAKRAEIPVILVNRHIQTNDPELFVTHIGPSFKAEGNRAGLFVS 149 Query: 143 KEVNG---KPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK------------IIRSQ 187 + ++EL G+ ++ R +GF E+I P +K I+ Sbjct: 150 NHFTNSKKQEIRILELAGSENSTPTKLRSEGFLESINRKPTLKKDGTIDHKPPMTIVHRI 209 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 GDF R KGK+ M+ +++ N+ I ++Y+H+D+M GA+ AIKE +KPG+D++ +I Sbjct: 210 VGDFIRMKGKDQMKRYLET-NDLSEIDVLYSHSDEMTHGALAAIKETSIKPGEDLIIVTI 268 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY----KKDGTMPEKLTLTKSTL 300 DG D+ + + G N VE P++ + + +Y + T+P+ + ++++ Sbjct: 269 DGQEDMIENLRSGIVNCVVECKPDVGWYVANTVTRYFGNLQTGKTLPKDIFISETVF 325 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/269 (35%), Positives = 159/269 (59%), Gaps = 4/269 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQ-ENQIKAVRSFVAQGVDA 82 L VGFSQ+ +++ WR A+ N + G+ + ++ E Q++ + + + VD Sbjct: 42 LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + I P PVL++AK+A+IPV L+D+S + D+S Y++ ++AD + EG++ D L Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILIDQSAETIDQSYYISLISADYLKEGQICADLLA 161 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME- 201 ++ PC +VE+ GT + A R KGF +A++ PN++II + G+F R ++ ME Sbjct: 162 EKFGDTPCRIVEIYGTESSPGAQARSKGFHQALQQYPNMEIIDIEYGNFDRVTAQKAMEN 221 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + IKA +G+ I V+AH+D+ +GA+QAIK AGL PG+ I SI+G+ D+ KA++ GE Sbjct: 222 ALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGR-ISIVSINGIQDVCKAIIAGE 280 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMP 290 +VE P G +L + K+ G P Sbjct: 281 YLGTVESNPRW-GFIVASLIQQKERGYKP 308 >UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQX4_9FIRM Length = 409 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 105/275 (38%), Positives = 152/275 (55%), Gaps = 12/275 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +++GF+QVG ES WR A T A+ +E G L D Q++AVR F+ Q VD Sbjct: 101 ISIGFAQVGHESDWRTASTKSAQDVFSEANGYELSFVDCDNDSAAQLEAVRGFIQQDVDY 160 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I P+V+TGW+ VL E +DA IPV ++DR+ID DK Y++ V ++ EG G+WL Sbjct: 161 IIIDPIVSTGWDTVLTECEDAGIPVIVIDRTIDDSDK--YVSWVGSNFKDEGLACGEWLK 218 Query: 143 KEVNGK---PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 + K N + ++G+ GAS I R GF E I + I+ SQSGDFT + G+EV Sbjct: 219 AYADAKGMGEINALVIEGSTGASATIGRTDGFKE-IADKYGWTILDSQSGDFTEAGGQEV 277 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG--KDILTGSIDGVPDIYKAM 257 MESF ++ N+ V ND+ GA+ A+ AG+ G D++ S D + + Sbjct: 278 MESFCQSYAGQFNV--VICQNDNEAFGAMTAMDNAGVSYGVDGDVVLVSFDANKPALQLV 335 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 MDG+ A+ E P MA P + + + + G PEK Sbjct: 336 MDGKITANFECNP-MAAPFVEQVIQQLQAGETPEK 369 >UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional regulator n=8 Tax=Actinobacteridae RepID=C7QZ43_JONDD Length = 328 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 7/294 (2%) Query: 24 LTVGFSQVGSESGWRAA-ETNVAKSEAEKRGITLKIADGQQ-KQENQIKAVRSFVAQGVD 81 +TVGF VG E WR A ETN+ +S E+ G LK A Q++QI A SFV +GVD Sbjct: 38 VTVGFVAVGPEGAWRQANETNIQESFTEEAGFNLKYAPATNLDQKSQIDAFTSFVDEGVD 97 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I ++ +GWE L A++AEIPV L+DR I+ + LY+T + DNI + +W Sbjct: 98 VILLSATEGSGWEDSLSRAQEAEIPVILIDRGIEPDNTDLYVTRIAPDNIAVSTSVAEW- 156 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 K + N L+G G SV +R +G+ I + + +Q+ +++ + K V E Sbjct: 157 AKTALPEGGNYFVLEGPAGVSVVNERNEGWDAVIGAESSFTKLGAQTANWSTEEAKSVFE 216 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + +K+ NN ++ +V+A ND+M +GA QAI+EAGL PG+D+ +IDG +A+ G Sbjct: 217 TVLKSNNN--DVQLVFAQNDEMGLGAAQAIEEAGLTPGEDVKIATIDGTKGALEALAAGR 274 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS-TLYLPDTAKEELEKKK 314 + E P A D + K DG E + +S T P+ A+E L +K Sbjct: 275 LSFVAEYNPLFGDVAVDVVNKV-LDGESVEPYIIAESLTFDSPEAAQEALPDRK 327 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 143/260 (55%), Gaps = 2/260 (0%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 VGFS++ + WR A+ + + EAE RG +++ + QI V + Q +D + Sbjct: 71 FKVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFL 130 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 FIAP+ P ++ AK +P LLDR + Y+ T+ ++ I +G+ DWL + Sbjct: 131 FIAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYIWQGEACADWLSE 190 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +V++ G VG S DR+ GF +K N++I+ +QSG+++R++ ++VM++ Sbjct: 191 NGGADSYKIVQITGKVGGSDVRDRQAGFETGVKKYENMEIVATQSGEWSRTEAQKVMQNI 250 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 I++ G + +VY HND+M +G + A+K AG+ PG D+ +IDG + +A++ GE N Sbjct: 251 IQS--TGGDFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAIIAGEMN 308 Query: 264 ASVELTPNMAGPAFDALEKY 283 P AFD +EKY Sbjct: 309 CIATCNPRFGPVAFDTMEKY 328 >UniRef50_B6FKZ7 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ7_9CLOT Length = 344 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 154/283 (54%), Gaps = 10/283 (3%) Query: 24 LTVGFSQVGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +T+GFSQVG+ES WR A + ++ ++ +RG L D +Q Q NQI A+RSF+ Q VD Sbjct: 38 ITIGFSQVGAESDWRTANSISIKETFTPERGYDLIFEDARQDQSNQIMAIRSFIQQDVDY 97 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +PVV GW+ VL+EAK A IPV ++DR ++VKD SLY V +D ++G+ L Sbjct: 98 IIFSPVVEDGWDTVLEEAKRARIPVIVIDRMVNVKDDSLYTAWVGSDFYMQGEKACAALK 157 Query: 143 KEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 V+ + N+V +QGT+GA+ I R + EA + I+ +SGD+T + E+ Sbjct: 158 AYVDAQEMEKVNIVHIQGTLGATAQIARTQALTEA-ASRYGWNIVAQESGDYTEAGAYEI 216 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 M + N +I VY ND+ GA++AIK+ G I S D + M+ Sbjct: 217 MNRVL---NEYDDIDFVYCENDNETFGALEAIKKK-YSNGGGIKLISFDATEKGLRYTMN 272 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 G ++E P M GP + + K +DG P+K +++ Sbjct: 273 GNIMINMECNP-MQGPEAEKIIKQLQDGKTPQKQAFVPEQIFV 314 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 10/294 (3%) Query: 22 APLTVGFSQVGSESG-WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 A TVGFSQ E+ +R AET K EA KRG+ L + Q + QI V+ +A+G Sbjct: 79 ASATVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGA 138 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 D + IAP+ + GWEPVL+ A +IP+ +DR I+ Y++ + +D + +G+ D Sbjct: 139 DLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQGRRAADK 198 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEV 199 +++ GK V L G G +V +R KGF + + + AP +K++ Q+GDF R KG+ V Sbjct: 199 MIEATGGK-GEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSV 257 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK-DILTGSIDGVPDIYKAMM 258 E I+++ K I YA ND+M +GA+ A+K AG KPG I+T +DG + K ++ Sbjct: 258 TEQLIQSKPGIKGI---YAENDEMGLGAVNALKSAGKKPGAVKIVT--VDGTRNAVKQIV 312 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 DG + +E P AF L+ + K G ++ + K + Y A+ +L K Sbjct: 313 DGWISGVIESNPRFGPLAFQTLDTFTK-GEEVQQDIVIKDSAYDKTNAEADLGK 365 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/274 (36%), Positives = 148/274 (54%), Gaps = 11/274 (4%) Query: 24 LTVGFSQVGSESGWRAA--ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + +GFSQ WR A E N + + L + DG Q+ V S +AQG+ Sbjct: 33 IKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQVADVESLIAQGIK 92 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + I+P+ PV+KEA DA I V LDR ++ + V +N+ G G++L Sbjct: 93 VLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVN----TPVTVHVGGENLPLGVGAGEFL 148 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 K++NGK N++ELQGT GAS IDR KGFAEAI P++K++ SQ+ D+TR K + ME Sbjct: 149 AKKLNGK-GNIIELQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKFME 207 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 ++ G+ I VYAHND+M +GAIQ ++ AG ++ IDG ++A+ G+ Sbjct: 208 DMVQRFGPGQ-IQAVYAHNDEMALGAIQVLEAAGRL--NEVAVVGIDGQETAFEAVKQGK 264 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 A+ + P +A + K K +PE +TL Sbjct: 265 LAATF-VYPFVAPEGIETAYKVAKGEEVPETITL 297 >UniRef50_C0CVX1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVX1_9CLOT Length = 373 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 147/288 (51%), Gaps = 5/288 (1%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 VG +Q+ + +R AETN E G + + + QI V +AQ +D + + Sbjct: 87 VGLAQMHYTNAFRIAETNSVLEAFEGAGFEVVWNEAKNDTATQISNVNDLLAQDIDYLLL 146 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 P G P L+ AK A +PV LLDRS + Y+T + ++ EGK DW+++ Sbjct: 147 PPKEEEGLVPALEAAKAAGVPVILLDRSANGTPGEDYVTAIRSNAEAEGKWCADWVIQNY 206 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIK 205 K CNVVE+ G G++ A+DR KGF IK NI ++ SQ G+ RS+ + ME+ I+ Sbjct: 207 PDK-CNVVEIFGAPGSTTAMDRSKGFMATIKGHDNIVLLESQVGNNMRSEAQVCMENLIQ 265 Query: 206 AENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI-DGVPDIYKAMMDGEANA 264 A G I +V H+D+M GA+QAI GL PG+DI SI DG + + ++DG A Sbjct: 266 A--YGDEIDVVVTHSDEMTFGALQAIDGMGLVPGEDIDVLSIGDGSSAMLQEIIDGRVAA 323 Query: 265 SVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 E +P + GP + + G + L + D A ELEK Sbjct: 324 CSECSP-LLGPQALQVVAALEQGMEVDGLIWANDRFFTVDNAATELEK 370 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 146/278 (52%), Gaps = 5/278 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L +GFS+ WR AE AE G L + + E QI V +AQ D I Sbjct: 68 LKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDVEDLIAQKCDLI 127 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLD-RSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I PV A P + K A IPV +D + +D K K ++TT+ +D +G+ +W V Sbjct: 128 VIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSDQYQQGQGCAEWTV 187 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 V K V+E+ G G S A +R +GF E + + NIK+I+ Q+G+++R+ +EV+++ Sbjct: 188 GHVGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVIQ-QNGEWSRATAQEVVQN 246 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++ G+ ++Y H+D+M +GA+ +K+AGLKP +D+ ++DG + A+ E Sbjct: 247 VAQS---GQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDGQKEALDAIKADEI 303 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 A + TP FD + KY + E+ + +ST+ Sbjct: 304 GAIITCTPKGGDVLFDCINKYFAGDELEEEYFVHQSTI 341 >UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKG2_9FIRM Length = 343 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 154/278 (55%), Gaps = 5/278 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 +T+GFSQ + S W+ ET + +A++ G+ L D Q + V+QGV+ I Sbjct: 60 MTIGFSQCDNSSNWKIVETESIQEKAKELGVNLIYTDASGNIAKQASDIEDMVSQGVEYI 119 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 +AP G + LK A DA I V L+DRSI+ + + Y T V +D + E + + +++ Sbjct: 120 IVAPQEEDGLQSALKSAMDAGIGVILIDRSINGEAGNAYTTKVMSDFVWEAEQVAQRVIE 179 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +G+ NVV +QGT GA+ +R+KGF +AI + ++K+I Q +++ K +EVME+ Sbjct: 180 VTSGEG-NVVIIQGTQGATSTTERQKGFMDAIAD-TDLKVISDQVANYSMPKAQEVMENV 237 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 ++A+ G +I +VY H DM +GAI AIK AG +PGKD+ +D D +A++ GE Sbjct: 238 LQAQ--GNDIDIVYCHGADMAMGAIAAIKAAGFEPGKDMQVVCVDASKDAMEALIAGELL 295 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 + +P FD + K G E + + TLY Sbjct: 296 CTCSCSPYFGEVTFDLIGKMAA-GETVEASYINEDTLY 332 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 148/273 (54%), Gaps = 9/273 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 LTVGF+Q G+ + W A T + A++ G+ D + + +A+ +D + Sbjct: 50 LTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIEDMLAKDLDIL 109 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 IAP+ TG E VL EA + +PV L R+ + Y+TTV +D EG+ + + + Sbjct: 110 VIAPMEDTGLEAVLDEAAEKGVPVILSARTT----QGEYVTTVYSDQAWEGERCAELIGE 165 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEVMES 202 ++ VVEL+G G S R+KGF + + + P+++I+ Q+ +F+R + + M + Sbjct: 166 KI--PDAKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEAMDAMAN 223 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++A+ I VY HND+M +GA+QAIK+AGL PG+DI IDG + ++ + GE Sbjct: 224 ILQAKGP-DAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEM 282 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 +V+ +P F+ ++K DG +K T+ Sbjct: 283 LGTVQCSPKHGPTVFEVIQKI-LDGETVQKETI 314 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 144/258 (55%), Gaps = 15/258 (5%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A+ EA+K+G+TL D Q QI ++ + + V I + P + +K A A Sbjct: 61 AEEEAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAG 120 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV LDRS++ + + + V +DN+ GK+ ++L++++ G +VVEL+G GAS A Sbjct: 121 IPVVTLDRSVNGGEVASH---VASDNVAGGKMAAEYLLEKI-GNQGDVVELEGIPGASAA 176 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 +R +GF + I A ++K++ Q DF R+KG VME+ ++A KN+ V+AHND+M Sbjct: 177 RERGQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQAN---KNVKGVFAHNDEMA 233 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKY 283 +GA+QA++ AG+ KD+ D D A+ G+ +A+V P + G A DA +K Sbjct: 234 LGAVQALEAAGM---KDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAAKKI 290 Query: 284 ----KKDGTMPEKLTLTK 297 D ++P L L K Sbjct: 291 IDGQPVDKSLPVPLDLVK 308 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/272 (34%), Positives = 140/272 (51%), Gaps = 7/272 (2%) Query: 15 MSSMALAAPLT-VGFSQVGSESG-WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAV 72 ++ + L P T VGFSQ S S +R+ ET+ ++A+ G+ L + Q + Sbjct: 72 VAQLNLTDPSTIVGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQI 131 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 +AQG + +AP + G P L EAK +IPV +DR++ S ++ + ++ Sbjct: 132 EDMIAQGAKVLIVAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTACSDFIAFIGSNFYG 191 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDF 191 + ++ D L G V L GT G +V DR GF + +K PN+ ++ SQ+G F Sbjct: 192 QAQIAADDLAT-ATGSQAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKF 250 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 ++ G+ VM ++A N G I VYA ND+M +GAIQAI AG KPGKDI SIDG Sbjct: 251 DQTDGQSVMAQMLQA-NPG--ITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQ 307 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 + + G A VE P AF +L+ + Sbjct: 308 QAVQDVAAGTIYADVETNPRFGPLAFSSLQAF 339 >UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D949_9CLOT Length = 352 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 5/288 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L GF+ + W + G + + QI V +AQG+D + Sbjct: 64 LKAGFAACHYTNDWNITNCETVCEDLRSVGFEVVWNEANNDTATQIANVEDLLAQGIDLL 123 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 I P G P L+ +DA +PV LDR V D SLY+T + DN+ G+ +G WLV Sbjct: 124 VIKPKEEEGLIPALEACRDAGVPVICLDRK--VSDPSLYVTAIMTDNVAGGETVGQWLVD 181 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 C +VE+ GT G++ I+R KG + I I+II SQ GD RS+ + V E+ Sbjct: 182 HYP-DGCKIVEIVGTAGSTGQIERSKGLSNVIDKYDQIQIISSQVGDNMRSEAQTVTENM 240 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI-DGVPDIYKAMMDGEA 262 I+A + I ++ ND+M +G +QA+ G++PG++I +I DG ++ + + DG Sbjct: 241 IQAYGK-EGIDVIVTQNDEMAMGCLQALWGLGIEPGQEITICTIGDGNSEVVEQVKDGTV 299 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 E TP + + K EK + + + + A +EL Sbjct: 300 GCVYESTPYLGPQVLEVAHKIFVTKEDVEKYIPSANRFFTIENADQEL 347 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 P+ +GF+ + + A +N + EA+K G+ + I +G Q+ V + Q V+A Sbjct: 44 PIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQQHVNA 103 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I + P + +++A A IPV LDRS+ + + + + ++++ GK+ D L+ Sbjct: 104 IILNPTDSQSLSTAVEQANRAHIPVITLDRSVTKGNVACF---IASNSVEAGKMAADELI 160 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 K + GK VVELQG +G S DR+KGF E I AP I+++ Q+ +F RS+ VM++ Sbjct: 161 KALGGK-GQVVELQGVIGTSAEADREKGFDEEIGKAPGIRVVARQTANFDRSQALNVMQN 219 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI-LTGSIDGVPDIYKAMM 258 ++A NI V+A ND+M +GA++AI+EAG K + + G + V D++K ++ Sbjct: 220 ILQAH---PNIQGVFAQNDEMALGALKAIQEAGKHNIKIVGIDGEKEAVNDVHKGLL 273 >UniRef50_A8RMQ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RMQ4_9CLOT Length = 330 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 154/293 (52%), Gaps = 8/293 (2%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI-ADGQQKQENQIKAVRSFVAQGVDA 82 L VG SQ + W+ A+ K A +RG L A ++ E QI+ + + +D Sbjct: 38 LRVGLSQAEPLTPWKTAQIKSFKEAARRRGAQLIYHAPEEESLEWQIEDIYGLLDADIDY 97 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK---DKSLY-MTTVTADNILEGKLIG 138 + + P G++ VL EA+ +PV L ++ ++++ D+ Y + V +D EG+L Sbjct: 98 LILIPSARNGYDQVLLEARQRGVPVILAEQDVEMEPEYDREDYILGYVASDYYAEGELCA 157 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 D L + +PC+ + +QG +++ +R GF ++ N+ + + R ++ Sbjct: 158 DILARHFGIEPCHTMVIQGEKSSAMDWERYMGFMHGVREHSNLYVSKRVESSGNRLTAQK 217 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 V ES I ++ N V+A +D+ +G +QA+K AG++PG+D++ SI G+ D++KA++ Sbjct: 218 VTESVIADQDIDFN--AVFAQSDEDGLGVLQALKLAGMEPGEDVVIVSIGGIQDVFKAII 275 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 E A+V+ +P FD + ++++ G P++ T+ K Y D A+E E Sbjct: 276 AREYLATVKSSPEYGDAVFDIINRHQR-GENPDRQTMVKHREYTMDNAEELFE 327 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 139/283 (49%), Gaps = 9/283 (3%) Query: 24 LTVGFSQVGSESG-WRAAETNVAKSEAEKRGIT-LKIADGQQKQENQIKAVRSFVAQGVD 81 L VGFSQ S + +RA ET + A+ + L + Q Q+ V + + QG Sbjct: 56 LVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQGAQ 115 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL-EGKLIGDW 140 A+ IAP+ +TG +P +A IP+ LDR S Y++ + ++ +G++ Sbjct: 116 ALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLSFLGSNFYFKQGEIDARE 175 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 L K G V E+QG G SV + R KGFA +K P +KI+ Q+G++ + ++VM Sbjct: 176 LAKATGGH-AMVAEIQGAYGNSVEVARTKGFAAGLKAYPGMKIVTEQTGNWFTTDAQKVM 234 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 + A N+ VYA D M GAI A+++AG KPG+ + SIDG + ++DG Sbjct: 235 SQILLAH---PNVNAVYAQADTMAFGAITALRDAGKKPGQ-VKIVSIDGTRQGVQDIVDG 290 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 A E P AF L+ + +P + LT +Y P Sbjct: 291 WIYADDETNPRFGPIAFHELQNWFDGKPVPRHIVLTDH-IYTP 332 >UniRef50_C0BVF8 Putative uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 RepID=C0BVF8_9BIFI Length = 330 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 148/291 (50%), Gaps = 11/291 (3%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK-QENQIKAVRSFVAQGVDAI 83 T+GF VG E G+R A N K E G L + Q Q+ QI+A FV VDAI Sbjct: 41 TIGFVAVGPEGGFRTANENDLKKAFEDAGFDLVYSPTQNNDQQKQIQAFNKFVNDEVDAI 100 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD---KSLYMTTVTADNILEGKLIGDW 140 ++ +GW+ L+ A +AEIPVF +DR+ID+K K ++ + N+ G+ ++ Sbjct: 101 VLSATNDSGWDDCLENAAEAEIPVFTVDRNIDIKSDAAKKAVVSHIGPSNVWAGEQAAEF 160 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 + K N L+G G SV DR G+ K A NIK++ SQS +++ + K V Sbjct: 161 VNKSF-PDGANGFILEGPAGLSVVTDRGTGWDN--KAASNIKVLESQSANWSTDEAKTVT 217 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 + + N ++A ND+M +GA QA+ AGLK I+T IDG ++++DG Sbjct: 218 AGLLD-KYKSDNPQFIFAQNDEMGLGAAQAVDAAGLKGKVKIIT--IDGTKAALQSLVDG 274 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 + + +E P +A++ Y DG E +S + D+AKE L+ Sbjct: 275 DLSYVIEYNPIFGKETANAVKDY-LDGKSVESDIEIESKTFDADSAKEALD 324 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 16/282 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L +G S + + + + N KS A+++ L ++D Q Q+ V++F++Q VDAI Sbjct: 49 LNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDAI 108 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 I PV + P +K A +A IPV +DR + +TTV +DN+ GK+ + K Sbjct: 109 LINPVDSDAIVPAIKAANNAHIPVIAMDRG---SNGGTVLTTVASDNVAAGKMAAQAVEK 165 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 V GK V+EL GT GAS IDR KGF K + I+ SQS +F R+ G ++ Sbjct: 166 LV-GKNVKVLELSGTPGASATIDRGKGFNSEAKTL-GLNILSSQSANFDRTTGLNTTQNM 223 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 +++ K++ ++A ND+M +GA +A++ G K I IDG + + A+ G Sbjct: 224 LQSH---KDVQAIFAQNDEMALGAAKAVQATGQK----IAIFGIDGESETHDAIKAGTMT 276 Query: 264 ASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 A++ P G A A Y + + + S +YL D Sbjct: 277 ATIAQQPAKIGEMALQATYDYYQGKKIAH---MINSPIYLVD 315 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 133/253 (52%), Gaps = 18/253 (7%) Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA+K+GI + + D Q Q V + QGVDA+ I P ++ ++ A IPV Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 LDRS + T V +DN+ G++ D++V+++ GK V EL+G GAS +R Sbjct: 121 VTLDRS---AENGKVETLVASDNVKGGQMAADFIVEQL-GKGAKVAELEGVPGASATRER 176 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF + + N +I Q+ DF R+KG VME+ ++ +I V+AHND+M +GA Sbjct: 177 GSGFHKTADDKLN--VIAKQTADFDRTKGLNVMENLLQGN---PDIQAVFAHNDEMALGA 231 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-----PAFDALEK 282 I+AI+ + GK+IL DG D KA+ G+ +A++ P + G A D L Sbjct: 232 IEAIRSS----GKEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNG 287 Query: 283 YKKDGTMPEKLTL 295 K + T+P L L Sbjct: 288 KKVEKTIPAPLKL 300 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 18/231 (7%) Query: 26 VGFSQVGSESGWR-AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G SQ SE WR + + + G+T++ A + QI+ + F+ GVD + Sbjct: 30 IGVSQC-SEDIWRDKLNQELQTATYMEDGVTMRFASADDNDKRQIQQIEQFIKDGVDLLI 88 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 I+P A PV+ +A + IPV L DR D K Y + ADN+ G+ +GD++ ++ Sbjct: 89 ISPNQAHAITPVVDKAVEKGIPVILFDRKADGK----YTAFIGADNVEVGRQMGDYVARQ 144 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFI 204 ++ NV+EL G G+S AI+R +GF E I P IK++ S GD+T++ G+ +++F Sbjct: 145 LDYHG-NVIELMGLKGSSPAIERHRGFIERISRYPGIKLVESLQGDWTKASGRRAIQAF- 202 Query: 205 KAENNGKNIC----MVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 ++ +G C V+A ND M +GA +EAGL P + G +D +P Sbjct: 203 -SQRHGTASCATIACVFAQNDRMAMGA----REAGLLPKSTLFCG-VDALP 247 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 13/244 (5%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAV 72 A ++A +GFSQ + WRA +EA K + L I DG+ + E Q+ V Sbjct: 25 AGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADV 84 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + + Q VDA+ ++P + G V+++A DA+IPVF+LDR+++ Y V DN L Sbjct: 85 ENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVET---DQYTQFVGGDNKL 141 Query: 133 EGKLIGDWLVKEVNGK---PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK-IIRSQS 188 G+ G++ V+ + GK N+VE+ G +G A DR GF E P IK ++ QS Sbjct: 142 IGRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIKNLLDKQS 201 Query: 189 GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSID 248 GD+ + + +M + ++ N + I +VY HND M GA A K+AG + K+I ID Sbjct: 202 GDWKQDQAYNIMATALR---NNEKIDLVYGHNDPMAYGAYLAAKDAGRE--KEIKFIGID 256 Query: 249 GVPD 252 +P+ Sbjct: 257 ALPN 260 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 127/219 (57%), Gaps = 9/219 (4%) Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA+K GI L D ++ Q++ V SF+AQ VDAI + P P + +A A+IP+ Sbjct: 63 EAQKAGIELITVDAERSALKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPI 122 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 ++ K + V +D++ ++ ++ ++ GK NVV + G +G + I R Sbjct: 123 INVNSETSSKPSAF----VGSDDVESARIAMKFIADKLGGK-GNVVMMHGYMGQAAQIKR 177 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 ++G E +K PN+K++ Q+G++ R+K +ME++I ++ G I V+AHND+M +GA Sbjct: 178 EQGAREILKQYPNLKLLAHQTGEWDRAKAMSLMENWI--QSYGSQINAVFAHNDEMGLGA 235 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 ++A+ +AGLK ++ SID +PD +A+ G +A+V Sbjct: 236 VKALTDAGLK--DKVIVVSIDAIPDALQAVKKGSLDATV 272 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 12/230 (5%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A+++A + G L D Q ++ V +GV AI I P A ++ A A Sbjct: 51 AEAKAAELGYKLIALDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRAN 110 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV LDR+ D ++ + +DNI G+L G+++ +++ GK V++L+G G S A Sbjct: 111 IPVLTLDRTAAHGD---IVSHIASDNIAGGELAGEFIAQQL-GKNAKVIQLEGIAGTSAA 166 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 +R +GF+ A+ A N +++ SQ DF RSKG VME+ + A NG ++ V+A ND+M Sbjct: 167 RERGEGFSNAV-TANNFELLSSQPADFDRSKGLNVMENMLAA--NG-DVQAVFAQNDEMA 222 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 +GA++AI+ A GKDIL DG + A+ + +A+V P + G Sbjct: 223 LGALRAIEAA----GKDILVIGFDGTDEGIAAVRRQQLSATVAQQPELLG 268 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 10/226 (4%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A+ +A++ G+ + D Q + + A G + I P + P +++ D + Sbjct: 69 AQKKADELGLAINFQDAADDSATQSNQLANAAASGTGVVIINPTDSDAMAPAVQQLVDEK 128 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV +DR+++ + + Y + +DN GK L +NG+ ++ LQG G+S + Sbjct: 129 IPVVAVDRAVNNANVASY---IASDNETGGKQAAKVLSDAINGEG-EILVLQGKTGSSAS 184 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 +R KGF E +K+ PNIK++ Q+ +F R+KG +V + ++A N+ ++A ND+M Sbjct: 185 RERGKGFDEGLKDNPNIKVVAKQTAEFERAKGLDVTTNLLQAH---PNVKAIFAENDEMA 241 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 +GAI+A+ G K GKD+ DG D KA+ DG AS+ P Sbjct: 242 LGAIEAL---GSKAGKDVKVIGFDGAEDALKAIKDGRMYASIAQQP 284 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 138/270 (51%), Gaps = 19/270 (7%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A++ GI L I D Q Q+K V + + + DAI I + ++ +A IPVF Sbjct: 91 ADEHGIELYITDAQDDPTIQMKDVENLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVF 150 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 +DR + ++ + D I G++ G +LV + GK +VE+QG +G +VA +R Sbjct: 151 TMDRE---ANGGEVISHIGYDAIKSGRMAGQYLVDTLGGKG-KIVEIQGIMGTNVAQNRS 206 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 +GF E +K+ P+++I+ Q DF R+KG VME+ ++A I +YA ND+M++GA+ Sbjct: 207 QGFNEVMKDNPDMEIVACQVADFDRAKGMSVMENILQAN---PEIDGLYAANDEMLLGAL 263 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-----PAFDALEKY 283 +A++ AG +I+ D + D AM G+ +A++ P G A+D LE Sbjct: 264 EAMEAAGRT--DEIVKIGCDAIDDTLDAMKAGKVDATIAEPPFFLGKAILNTAYDYLE-- 319 Query: 284 KKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 G E + + L DT + K+ Sbjct: 320 ---GKQVEPYVILDNQLVTQDTVDSLVTKE 346 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 13/227 (5%) Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA+KRG+ + I D Q Q V + QGVDA+ I P ++ ++ A +PV Sbjct: 62 EAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVPV 121 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 +DRS ++ T V +DN+ G++ ++ ++ GK V EL+G GAS +R Sbjct: 122 VTIDRS---AEQGKVETLVASDNVKGGEMAAAFIADKL-GKGAKVAELEGVPGASATRER 177 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF ++++ QS DF R+KG VME+ ++ +I V+AHND+M +GA Sbjct: 178 GSGFHNIADQ--KLQVVTKQSADFDRTKGLTVMENLLQGH---PDIQAVFAHNDEMALGA 232 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 ++AI + GKDIL DG D ++ D + +A+V P + G Sbjct: 233 LEAINSS----GKDILVIGFDGNKDALASIKDRKLSATVAQQPELIG 275 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 142/295 (48%), Gaps = 21/295 (7%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G SQ WR A + AEK + AD Q QI + +FV GVD I Sbjct: 37 IGMSQCNLGEPWRVAMNDQIAMAAEKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLII 96 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 +P AT + A DA IPV LLDR ID DK Y + ADN+ G++ G+++ Sbjct: 97 TSPNEATPLTNAVSAAYDAGIPVILLDRKID-GDK--YTQFIGADNVDMGRIAGEYIADT 153 Query: 145 V---NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + GK C + L+GT G IDR GF E IK I+I+ + D+ R K V E Sbjct: 154 LLPDGGKVCEIKGLEGTSGG---IDRDNGFREGIKKNDKIEIVAVNNADWLREKAITVAE 210 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI---YKAMM 258 ++ + I + A ND M GA A K AG + DIL DG+P +++M Sbjct: 211 EMLQTND---EIDLFLALNDPMAEGAYIAAKNAGRE--GDILFVGFDGLPTPDGGIRSVM 265 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEK-LTLTKSTLYLPDTAKEELEK 312 DG + + ++ P A ++ + +G +K LTLT S + PD A+E LEK Sbjct: 266 DGRLSMT-QVYPTGGTEAIESAYQLLVEGKELDKTLTLT-SEIVTPDNAEELLEK 318 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 25/299 (8%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKR-------GITLKIADGQQKQENQIKAVRSFVA 77 T+G SQ SE WR K AE R + LK A E Q++ + S + Sbjct: 26 TIGVSQC-SEDIWRE------KQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSLMN 78 Query: 78 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLI 137 +G+D + +AP P + A D IPV + +R + Y ++ADN G ++ Sbjct: 79 EGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQK---YTAFISADNYEMGHVM 135 Query: 138 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 G+++V ++GK NV+E++G G+S AI+R GF +AIK+ P IK++ S GD+T + Sbjct: 136 GEYIVSRLHGKG-NVLEIKGLAGSSPAIERHNGFMDAIKDEPGIKVVGSLQGDWTEATAC 194 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 + + ++ A N G + +V+ ND +GA +A+ E L G D L G G+ + ++ Sbjct: 195 QKSKEWLAA-NEGVPVDLVFGANDRTAMGAREALGEKPLYCGIDGLPGKNGGIQLVRDSL 253 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNM 316 +D + P D L +G EK T+ S L D AK L + + M Sbjct: 254 LDASF-----IYPTHGDQLMD-LAIRILEGQPYEKETMLMSALVTHDNAKVLLMQGEEM 306 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 14/238 (5%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A K + I D Q Q V + QGVD I I PV +T +++A +A IPV Sbjct: 75 AGKENVETVITDAQNDSSTQNNQVEDLITQGVDLIVINPVDSTAIATSVEKANEANIPVI 134 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 +DR D+ ++ + ++N+ GKL G++++++V G+ V++L+G GAS +R Sbjct: 135 CVDRG---SDQGELVSFIASNNVEGGKLAGEYILEKV-GENAEVIQLEGIPGASSTRERG 190 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 +GF EA I ++ SQ+ +F R++G VME+ ++A ++ V+ ND+M +GA Sbjct: 191 EGFEEATNG--KINLLASQTANFDRAEGMTVMENLLQAH---PDVKAVFCQNDEMALGAS 245 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKK 285 +AIK + GKD+ DG D KA+ +G +A+V P G A + KY K Sbjct: 246 EAIKAS----GKDVTIVGFDGNEDAIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLK 299 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 141/264 (53%), Gaps = 9/264 (3%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ 62 KR+++V+A+ + S +A T+G S + + + EA+ RGI+++ D + Sbjct: 5 KRIVLVAALGCSTSVLAE----TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFEDAR 60 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY 122 Q V++F++ GVDAI + PV + G + K A IP+ ++R+ Sbjct: 61 GDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLPAG 120 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 + V +D G L + L + N + NV + G + + A+ R K + + P +K Sbjct: 121 VVFVGSDEKQSGTLQMEELARLANYQ-GNVAVMIGNLTDAGALQRTKDVEQVVAKYPKMK 179 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 +++ QS +++RS+G ++M ++I NG++I +V A+ND+M IGAI A+++AG K G + Sbjct: 180 VVQKQSANYSRSEGMDLMLNWI---TNGESIDIVAANNDEMAIGAIMALQQAG-KQGSKV 235 Query: 243 LTGSIDGVPDIYKAMMDGEANASV 266 L G ID PD KA+ G+ +V Sbjct: 236 LVGGIDATPDGLKALSSGKMQVTV 259 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A++ A++ G L + D Q ++ V +GV AI I P + ++ A ++ Sbjct: 46 AETRAKELGYNLIVLDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSK 105 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV LDR D ++ + +DN++ G++ G+++V++V G+ V++L+G G S A Sbjct: 106 IPVLTLDRGASRGD---VVSHIASDNVVGGEMAGNFIVEKV-GEKAKVIQLEGIAGTSAA 161 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 +R +GF A+K + +++++ SQ DF R+KG VME+ + A ++ V+A ND+M Sbjct: 162 RERGEGFMNAVKGS-HMELLASQPADFDRTKGLNVMENLLAAN---PDVQAVFAQNDEMA 217 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 +GA++AI+ + GK+++ DG D A+ G+ A++ P++ G Sbjct: 218 LGALRAIQAS----GKEVMIVGFDGTDDGIAAVNRGKLAATIAQQPDLIG 263 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 9/227 (3%) Query: 26 VGFSQVGSESGWRAA-ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G SQ +R + ++ + AE +K AD Q Q+ V +++ Q +D + Sbjct: 49 IGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYITQQIDLLI 108 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 I+P A V+K+A D IPV +LDR ++ Y + DN+ G G ++ ++ Sbjct: 109 ISPNEAKPLTAVVKKAYDQGIPVLVLDRKVE---GDAYTGFIGGDNVQIGTEAGKYVAEK 165 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFI 204 V NVVE++G GA+ +R +GFA IK P +K++ + SGD+ R KG+ M++ + Sbjct: 166 VLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREKGQAQMDALL 225 Query: 205 KAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 KA I +VYAHND M GA A K G + K++ ID +P Sbjct: 226 KAN---PKIDVVYAHNDPMAEGAYLAAKAVGRE--KEMKFIGIDALP 267 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 138/243 (56%), Gaps = 9/243 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L +G + + ++ + ++ +++A++ G+ L D ++ Q++ V SF+ QGVDAI Sbjct: 32 LVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQGVDAI 91 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 + P P +K A DA+IP+ ++ K + V +D+ ++ ++ + Sbjct: 92 IMNPAEVEASSPAIKLAMDAKIPIINVNSETSAKPTAF----VGSDDTESARIAMKYIAE 147 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 ++ GK N++ + G +G + I R G + +K P +K++ QSG++ R+KG + E++ Sbjct: 148 KLGGK-GNILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWDRAKGMSLTENW 206 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 I ++ G I ++A ND+M +GA++A++ AGLK GK +L S+D +PD +A+ G + Sbjct: 207 I--QSYGDKINAIFAQNDEMGMGAVKALEAAGLK-GK-VLVVSVDAIPDALQAVKKGTLD 262 Query: 264 ASV 266 A+V Sbjct: 263 ATV 265 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 156/322 (48%), Gaps = 23/322 (7%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETN-VAKSEAEKRGITLKIAD 60 W +LI + + +A S + +G SQ SE WR N + S + +TLK A Sbjct: 6 WLYILIFTLLFSACSDNNVK-KYVIGVSQC-SEDIWRDKLNNELVMSTYQHDNVTLKFAS 63 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q + + F+ +GV+ + ++P V+ +A DA IPV L DR D K Sbjct: 64 ANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDSKK-- 121 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y + ADN G IG+++ ++++GK N+ E+ G +S AI+R +GF +A+K+ Sbjct: 122 -YTAFIGADNYEAGYEIGNFIGQQLDGK-GNIAEICGLQASSPAIERNRGFMDALKDYSG 179 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK+I + GD+ + G M+S + + I V+A ND M +GA+Q+IK+ + K Sbjct: 180 IKVIARKHGDWVKESGVMAMDSVLSQAK--EPIQYVFAQNDRMALGALQSIKKHKV---K 234 Query: 241 DILTGSIDGVPDIYKAM---MDGEANASVELTPNMAGP----AFDALEK--YKKDGTMPE 291 I ID +P M DG AS + P A + LEK YK+D + Sbjct: 235 GIRIVGIDALPVPGGGMENVRDGNLEASY-IYPTRGDSVMQLALNILEKKPYKRDNYLKG 293 Query: 292 KLTLTKSTLYLPDTAKEELEKK 313 L +TK+ + EE+ K+ Sbjct: 294 AL-VTKANANVLLMQNEEMNKQ 314 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 122/236 (51%), Gaps = 13/236 (5%) Query: 11 VSAAMSSMALAAPLTV-GFSQVGSESGWRAAETNV---------AKSEAEKRGITLKIAD 60 V ++S+ALA L V +Q GW A + A+ A++ G + AD Sbjct: 11 VLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFAD 70 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 G+ Q + +F+AQGVD I + P V+ P +K+ DA IP+ + DR + + Sbjct: 71 GKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQTHGQP 130 Query: 121 L-YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 + + V+ D + G + G+ VK + GK N+V ++GT GA IDR F E I+ P Sbjct: 131 IKWEALVSWDMVKSGTIGGEQTVKAIGGK-GNIVVVEGTPGAGSTIDRGNAFYEVIEKYP 189 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 +IKI+ +F R+KG+EV E+ ++ G+ I +Y D+M G +QAIK AG Sbjct: 190 DIKILAKIPANFNRAKGQEVTENILQRFKPGE-IDAIYYMADEMTFGGLQAIKAAG 244 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 143/273 (52%), Gaps = 19/273 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP------LTVGFSQVGSESGWRAAET--NVAKSEAEKR 52 + +R+LI+SA ++++ AAP + +GFSQ S S R T N A + + Sbjct: 4 ITRRMLIISA---GLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFK 60 Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 + L + + + K QI V S + QG+ + I+ + P +K+ A IPV L+R Sbjct: 61 DVDLIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLER 120 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 S+D+ +L+ V N G L G ++ + + GK NVVE++G + A++R +GFA Sbjct: 121 SLDIP-VTLH---VGPHNKPIGTLAGKYIAEALKGK-GNVVEIKGDPAVAPAVERHEGFA 175 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EAI IK+I D+ + K + ME ++ G+ I VYAHND+M GA++AI+ Sbjct: 176 EAIAGT-EIKVIAETHADWDQEKALKFMEDTLQRFPAGQ-IQAVYAHNDNMAFGALRAIQ 233 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 265 AG + + IL IDG +A+ G+ A+ Sbjct: 234 AAG-RDKEGILIIGIDGENAAIRAVAKGDLTAT 265 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 22/300 (7%) Query: 24 LTVGFSQVGSESGWRAAETNVA-KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 V FSQ + +RAA+ + K A + + L I+D QQ Q+ V +F+ Q D Sbjct: 29 FVVAFSQANNAEPYRAAQNALMEKLFAAQPDVKLVISDAQQDNSKQVAQVETFIRQKPDL 88 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + +AP V+ +A +A+IPV L+R I + Y + + +DN+ G+L G ++V Sbjct: 89 LIVAPNERAALTAVMGQAMEAKIPVICLERDILQPN---YTSYIHSDNVAIGRLAGQFIV 145 Query: 143 KEVN---GKPC-NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + GKP NVV ++G +G I+R +G E + P IKI+ D+ ++K K+ Sbjct: 146 GHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKEILDKYPEIKIVADPVADWIQAKAKD 205 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP-----GKDILTGSIDGVPDI 253 M ++A+ I +VY HND M IGA KE G + G D L G G+ Sbjct: 206 RMTEVLRAQ---PKIDVVYGHNDPMAIGAYLGAKELGREKEMIFVGVDGLGGPAGGI--- 259 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEK-YKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 K +MDG A+ + P A + + ++ G +P K + +S + + A + EK Sbjct: 260 -KKVMDGVLAATF-VYPLWVDKAVEIGTRILREPGFVPAKDYVLESVMVTTENAPQMYEK 317 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 13/311 (4%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT-LKIADGQQK 64 +++A + S + + +G S S+ +R N ++EA+ T L + + + Sbjct: 16 FLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAKNLPDTDLVVVNAKGD 75 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 Q + + VAQ +AI + PV + A D+ IP+ ++ + +D + Sbjct: 76 PARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIISVNNFLKNQDDA--AA 133 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 V +D+I G + ++ VK++NGK NVV L+G AI R +GF + ++N P IKII Sbjct: 134 YVGSDSITSGIMEAEYAVKQLNGKG-NVVILKGEPNHETAIKRTEGFKQVLQNYPEIKII 192 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 Q GD+ R+ G ++ E++IK NG + A+ND+M IGAI A+KE L ++ Sbjct: 193 DEQYGDWKRTLGMQITENWIK---NGTKFDAILANNDEMAIGAIMALKENNLI--NNVFV 247 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK--DGTMPEKLTLTKSTLYL 302 G ID PD K + +G +V N AG +A++ K G K L + Sbjct: 248 GGIDATPDALKLLKEGSLKVTV--FQNAAGQGSEAIKAAYKLVKGEKINKKIFVPYELVV 305 Query: 303 PDTAKEELEKK 313 P+ A + L K+ Sbjct: 306 PNDADKYLGKQ 316 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 136/274 (49%), Gaps = 10/274 (3%) Query: 1 MWKRLLIVS-AVSAAMSSMALAAPLTVGFSQ--VGSESGWRAAETNVAKSEAEKRGITLK 57 M K+L I A S S+ + A +G +Q VG +S + + + + + Sbjct: 1 MQKKLAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEGI 60 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + D QI V+ + Q VDAI + P P++++AK IPV + + +I K Sbjct: 61 VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISEK 120 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-K 176 + + I +G+ + + + +NGK VV++ G G AI+R+KGF +++ Sbjct: 121 GQEFITAFSGPNTITQGQYAAELMCEGLNGK-GQVVQITGQPGYQTAINRQKGFEDSLAA 179 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + P + II SQ GD+ R K + VME+FI G I VYA +D+M IGA+ AIKEA L Sbjct: 180 DCPGVSIIDSQPGDWNREKSQRVMENFIT--RFGTKIDGVYAADDNMGIGALNAIKEADL 237 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 K K + G+ + Y A+ +G SV +P Sbjct: 238 KNIK--IVGATNFAVG-YDAIKEGSYYGSVVQSP 268 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 12/230 (5%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A+++A++ G L + D Q ++ V +GV AI I P + ++ A ++ Sbjct: 48 AEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSK 107 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV LDR + ++ + +DN++ G++ G ++ ++ G V++L+G G S A Sbjct: 108 IPVLTLDRG---ASRGEVVSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAA 163 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 +R +GF A+K + ++++ SQ DF R+KG VME+ + A ++ V+A ND+M Sbjct: 164 RERGEGFMNAVKGS-KMQLLASQPADFDRTKGLNVMENLLAAN---PDVQAVFAQNDEMA 219 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 +GA++AI+ + GK ++ DG D A+ G+ A+V P+M G Sbjct: 220 LGALRAIQAS----GKSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 11/232 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQKQENQIKAVRSFVAQG 79 A +G +Q +S WR + EA G++++I Q + V F+ +G Sbjct: 27 APRFRIGVAQCSDDS-WRHKMNDEILREAMFYDGVSVEIRSAADDNRKQAEDVHYFIDKG 85 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 VD + I+ A P+++EA IPV L+DR I + DK Y + ADN G+ +G+ Sbjct: 86 VDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKI-LSDK--YTAYIGADNYEIGRAVGN 142 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 ++ + GK NVVEL G G++ A++R +GF AI N P+IK+I + R + Sbjct: 143 YIASSLKGKG-NVVELTGLGGSTPAMERHQGFMAAISNYPDIKLIDKADAAWEREPAEVE 201 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 M+S ++ I VYAHND + GA QA K+AG + K+++ ID +P Sbjct: 202 MDSMLRRH---PKIDAVYAHNDRIAPGAYQAAKKAGRE--KEMIFVGIDALP 248 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 12/232 (5%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A+ EAEK G L + D Q + V + GV A+ I P + ++ A + Sbjct: 51 AEKEAEKLGYDLVVLDSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSN 110 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGK--PCNVVELQGTVGAS 162 IPV LDR + + + +DNI G++ ++++ + + P NVVE+QG GAS Sbjct: 111 IPVITLDRQ---ANGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGAS 167 Query: 163 VAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDD 222 DR +GF + I Q+ DF R KG +VME+ I+A NI +V+AHND+ Sbjct: 168 ATRDRGEGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQAN---PNIQVVFAHNDE 224 Query: 223 MVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 M +GA++AIK +G+ L DG D ++ E A + P++ G Sbjct: 225 MALGAVKAIKASGINA----LVIGFDGNDDAKDSIDANEMTAIIAQQPDLIG 272 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 13/226 (5%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A+K ++++D Q Q + + + VD + I PV ++ P +K+A DA IPV Sbjct: 73 AKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPAVKDANDAGIPVI 132 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 +DRS D +T V +++ G++ ++++++ GK + ELQG GAS +R Sbjct: 133 TVDRS---SDGGKVLTLVASNSTKGGQMAAKYMIEKL-GKDAKIAELQGIPGASATRERG 188 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 KGF A K + I+ Q+ F R+KG V E+ + + NG +I +++ ND+M +GA+ Sbjct: 189 KGFDGAAKG--KLDIVSKQTAGFDRAKGLTVTENIL--QGNG-DIVGIFSQNDEMALGAV 243 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 QA+K A GK I DG D KA+ G+ A+V P G Sbjct: 244 QAVKAA----GKKITIVGFDGEADGIKAVKAGDMAATVAQKPEEMG 285 >UniRef50_C8XIB8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=C8XIB8_NAKMY Length = 332 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 2/200 (1%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 ++EA+K GI L I + Q + Q + VA + I + P VA P L+ AK A I Sbjct: 64 QAEADKDGIDLTITNSQYDADKQASDCQVAVAAKPNLIILWPAVADAVRPCLERAKAAGI 123 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 PV + + ++ DKSL + D I +G + + G+ N++E+ G G + AI Sbjct: 124 PVTVTNSDVEADDKSLVVAYSGPDTIGQGAASAEIMCDLAKGQALNILEIDGLTGNTTAI 183 Query: 166 DRKKGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 +R KGFA+ I PN+K++ +Q GD+ + + V + + N+ +YA +D MV Sbjct: 184 NRAKGFADTIASTCPNVKVLAAQPGDWNKDDAQTVTSEMLTSV-GAANVQGIYAADDTMV 242 Query: 225 IGAIQAIKEAGLKPGKDILT 244 GAI A+K + P I+T Sbjct: 243 AGAIDALKAQNIDPKSLIIT 262 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 144/283 (50%), Gaps = 23/283 (8%) Query: 4 RLLIVSAVSAAMSSMALAA-------------PLTVGFSQVGSESGWRAAETNVAKSEAE 50 R++I + V+A M A A +T+G + ++ + +EA+ Sbjct: 8 RIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAK 67 Query: 51 KRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 K+GI + ++D + Q+ ++ F+++ V AI P AT +K A A+IPV + Sbjct: 68 KKGIKVIVSDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTV 127 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 170 DR+ + + + +D++ + +G+++VKE GK + LQG +G + +DR+KG Sbjct: 128 DRNPPGEPGKSF---IASDSVAAARTLGNYVVKESGGK-GQLAILQGQIGTTPQVDRQKG 183 Query: 171 FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 F +A+KNAP IK++ Q D+ + K V + ++A I +++ D M +GA QA Sbjct: 184 FGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAH---PGIDILWGQADAMALGAAQA 240 Query: 231 IKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS-VELTPNM 272 +K +G K K ++ G DG KA+ G +A+ V+ T M Sbjct: 241 VKASGSKK-KHLIVG-FDGDIAGLKAVRRGTVDATMVQQTRKM 281 >UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL86_EXIS2 Length = 317 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 21/284 (7%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 VGF+ V + + N K+EA+ +A Q + ++ + + FV VDAIFI Sbjct: 37 VGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFI 96 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW----L 141 + ++EAK A IPVF +DR I ++++T++N + G+ + + L Sbjct: 97 TTLDDVYIGSAIEEAKKAGIPVFAIDRMI---RSDAVVSSITSNNQMIGEQLASYIKNEL 153 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +K+ +VE+ GT +R +GF + I+N P + I+ S SG++ + VM Sbjct: 154 IKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMR 213 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM---- 257 I ++G VY HNDD+ +G ++A+K+A + GK I+ G IDG I +A+ Sbjct: 214 QVI---DSGIPFDAVYCHNDDIAMGVLEALKKAKI-SGK-IVVG-IDGNRAILEAVDMKS 267 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 MD S E M AF AL+ + K+ +P++ T S LY Sbjct: 268 MDATVVQSAE---EMMKVAFSALKLHTKNKKIPDRF-YTYSYLY 307 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 16/262 (6%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQ 63 LL++ V+ A S A +G SQ SE WR + EA + + I Sbjct: 12 LLVLWGVAVACSRRE--ARFRIGVSQC-SEDEWRRQMNSEILREAHFYEDVEVDIRTAVD 68 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 + Q K +R +A+GVD + +AP AT PV++EA + IPV ++DR I + DK Y Sbjct: 69 DNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKI-LSDK--YT 125 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN GK +G+++ ++G+ +VVE+ G VG++ A+DR +GF +AI P I++ Sbjct: 126 AYVGADNYEIGKAVGEYVANVLHGQG-DVVEISGLVGSTPAVDRHQGFVKAISAYPGIRL 184 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP----- 238 + + G + + K E M++ + + +I +VYA ND M GA A G + Sbjct: 185 LAVEDGAWLQLKAGEKMDTLL---SRFPHIDLVYAQNDRMAAGAYAAAAREGREKDMRFI 241 Query: 239 GKDILTGSIDGVPDIYKAMMDG 260 G D L+G GV + +D Sbjct: 242 GIDALSGKDYGVEKVLAGELDA 263 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 9/265 (3%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADG 61 K+L++ S + + + LA + +G S + + +S+ ++ G ++ + D Sbjct: 4 KKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQFEDA 63 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 + QI+ + +FV+QGVDAI + PV G +P++K A+ A+IP+ ++R +V + Sbjct: 64 KGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTLPA- 122 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 M V +D+ L GKL + L K +NGK NV+ L G + DR +G E P I Sbjct: 123 GMAYVGSDSKLAGKLQMEELAKLMNGK-GNVMILMGELSNEATRDRTRGVEEVAAKYPGI 181 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 KI+ Q+ + R KE ++ G+ I + ++ND+M IGAI A+K+A K G Sbjct: 182 KILDKQTAKWGR---KEAVDITTDWALTGQQIDAIASNNDEMAIGAILALKQAK-KSG-- 235 Query: 242 ILTGSIDGVPDIYKAMMDGEANASV 266 +L +DG PD + + G+ SV Sbjct: 236 VLVAGVDGTPDALEYIKKGDLALSV 260 >UniRef50_B0G4U6 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G4U6_9FIRM Length = 357 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 136/266 (51%), Gaps = 10/266 (3%) Query: 33 SESGWRAA-ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVAT 91 +ESG+R A + ++ + ++ G A K + QI + + F+ GVD + ++ Sbjct: 78 NESGYRTANDKDLKATFTKENGYDASFA-YSLKNDEQITSAQKFIQDGVDYLLLSAADTA 136 Query: 92 GWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCN 151 GW+ VLK+A+DA V L DR+ID D+SLY ++ +D EG+ +WL K+ N Sbjct: 137 GWDSVLKDAQDAGTQVILFDRTIDA-DESLYAASIVSDMEKEGETAANWL-KDQKLPEYN 194 Query: 152 VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGK 211 ++ +QG +G++ R A+ K + I+ Q+ ++ K +++++S I ++G+ Sbjct: 195 IIHIQGVMGSAAQKGRSGALADTAK-SEGWNIVTEQTAEWNAEKAQQIVQSVI---DSGQ 250 Query: 212 NICMVYAHNDDMVIGAIQAIKEAGLKP--GKDILTGSIDGVPDIYKAMMDGEANASVELT 269 ++YA NDDM GA+ A+ +A + GKD++ D + +++ N + Sbjct: 251 AFNVIYAENDDMAKGAVAALDKANISHGVGKDVIVMGFDCNKWALEELLNQNWNYDGQCN 310 Query: 270 PNMAGPAFDALEKYKKDGTMPEKLTL 295 P A D ++K + + EK + Sbjct: 311 PYQASYIEDVIKKLESGEKIDEKTII 336 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 11/248 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETN-VAKSEAEKRGITLKIADGQQ 63 LI+ + S +G SQ S+ WR + + + G+ ++I + Sbjct: 7 FLILCLMGILTSCSQKHTRYYIGVSQC-SDDEWRHKMNHEIVREALFYDGVEVEIRTAKD 65 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 NQI+ + F+ + VD + +AP A PV+++A IPV ++DR I + D+ Y Sbjct: 66 NSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKI-LSDR--YT 122 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN GK +G ++V + GK ++E+ G G++ A++R +G A+A+K P I+I Sbjct: 123 AFVGADNCEIGKDVGQYIVNRLGGKG-KILEITGLEGSTPAMERHRGLADALKAEPGIEI 181 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 S G + +S E M+S ++ + K I +V+A ND M +GA + ++ L+ K++L Sbjct: 182 TASVDGAWLQSVAGEKMDSILQ---DNKGINLVFAQNDRMAVGAYLSARQRQLE--KEML 236 Query: 244 TGSIDGVP 251 ID +P Sbjct: 237 FVGIDALP 244 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 13/257 (5%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRS 74 ++ +A AA L +GFSQV +S + A++ A+ G L D Q ++ Sbjct: 25 LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + + VD + I PV +P + A+ +PV +DRSI+ + ++ DN+ G Sbjct: 85 LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGGVTAHLGR---DNVKMG 141 Query: 135 KLIGDWLVKEVNGKPCN---VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 K +GD ++ E+ K V+E+QG G +V R+ GF +A+K + KI+ ++ Sbjct: 142 KAVGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKGS-GFKIVAGPYAEY 200 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 TR+ M+ ++A ++ +VYAHNDDM +GA++ + EAG KD+ +DG+ Sbjct: 201 TRANAVTAMQDLLQAH---PDVKVVYAHNDDMAMGALKVLAEAG---KKDVFVAGVDGLS 254 Query: 252 DIYKAMMDGEANASVEL 268 + +M G+ + L Sbjct: 255 EALASMAGGDQYVATAL 271 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 22/281 (7%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G SQ + W A + A + I ++ D +Q QI V +F+++G+D + Sbjct: 44 IGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDARQNNAQQIADVEAFLSKGIDLLI 103 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW---L 141 I+P A+ P++ A IPV +LDR + + +++ + ADN L G+ G++ Sbjct: 104 ISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQYTMW---IGADNRLIGRKAGEYTARW 160 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +E PC V+EL+G G++ +R GF E I P+++II SQ+ D+ + + Sbjct: 161 CREQQRSPCTVIELRGLEGSTPTQERGDGFREGIAANPDVRIIASQNADWLAERADALAR 220 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG------LKPGKDILTGSIDGVPDIYK 255 +A ++ +VYAHND M I A KE G L G D L S G+ + Sbjct: 221 VLFEAN---PDVDVVYAHNDPMGIAAFNVAKEQGRDTDAILFIGIDALATSDGGI----Q 273 Query: 256 AMMDGEANASVELTPNMAGPAFD-ALEKYKKDGTMPEKLTL 295 A+ G+ N + + P A + AL ++ T P ++ L Sbjct: 274 AVRQGKLNVTY-VYPTGGAEAIEWALRILEQRETPPREIIL 313 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A+ ++++ G L + D Q + + + G+ + + P + ++ A A Sbjct: 55 AEKKSKELGYELLVLDSQNDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKAN 114 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASV 163 IPV +DR + + ++ + +DNI G+L +++ E+ N K VVELQG GAS Sbjct: 115 IPVITVDRQANGGE---VVSHIASDNIKGGELASSFIIDELKNKKDIKVVELQGIPGASA 171 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 +R KGF I N+K+I SQ+ +F R++G VME+ I+A++ + V+AHND+M Sbjct: 172 TRERGKGFHNIIDKKSNLKLISSQAANFDRAQGLSVMENIIQAQS---DFDAVFAHNDEM 228 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 +GA +A+K A K I+ DG D A+ E +A+V P + G Sbjct: 229 ALGAAKALKTA----NKKIIVVGFDGDEDAKTAIEKSEISATVAQQPALMG 275 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 124/268 (46%), Gaps = 16/268 (5%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPV 96 W AK AE+ G I D Q + + +A G DAI P A G Sbjct: 47 WFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIAN 106 Query: 97 LKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-----NGKPCN 151 +K AK+A IPVF +DR I+ + L + + +DN G L+G++ VK + + K Sbjct: 107 VKRAKEAGIPVFCVDRGINA--RGLAVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAKEIP 164 Query: 152 VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGK 211 EL G + A DR GF + P K++ QS +F R +V E ++A Sbjct: 165 YAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAH---P 221 Query: 212 NICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG-EANASVELTP 270 I ++ ND M +GA++A + AG DI DG D+ A+ +G + A++ P Sbjct: 222 EIKAIWCGNDAMALGAMKACEAAGR---TDIYIFGFDGAEDVINAIKEGKQIVATIMQFP 278 Query: 271 N-MAGPAFDALEKY-KKDGTMPEKLTLT 296 MA A + ++Y + + + PE + +T Sbjct: 279 KLMARLAVEWADQYLRGERSFPEIVPVT 306 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 155/311 (49%), Gaps = 35/311 (11%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVA----KSEAEKRGITLKIAD 60 LLIV+ +S A + +A P ++ GW A K A + + Sbjct: 9 LLIVTILSFAKFRVGVAIP--------AADHGWTGGMVWWAQYAIKQYANDPDVEFYLVT 60 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 ++ E QI V++ +A+G+DA+ I P + P+ +A I ++DR I+ ++ + Sbjct: 61 AKEPSE-QIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGINSEEYN 119 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 +Y + DN + G L G ++ +++ GK NVV ++G + +++ +R + F +A++ PN Sbjct: 120 VY---IAGDNYMYGYLAGKYIAEKLGGK-GNVVVIEG-IPSTINTERVEAFKKALEPYPN 174 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 +KII Q G ++R K E+M++ + NI V+ +DDM+ G + A+K+AG Sbjct: 175 VKIIAQQPGYWSREKAFEIMQTLL---TKFPNIDAVWTGDDDMLHGVLLALKQAGRDKNI 231 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELT--PNMAGPAFD---------ALEKYKKDGTM 289 ++ G+ + +I K +MDG V+ T PNM A + L + + G + Sbjct: 232 VLVGGACE--KNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQRG-I 288 Query: 290 PEKLTLTKSTL 300 P K+ L+ T+ Sbjct: 289 PRKIILSTETV 299 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 10/248 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQ 63 L I + +S + + +GFSQ WR + K E G L AD Sbjct: 10 LFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGAKLVYADADN 69 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 QIK V+ + QG+D + I+P A ++++ IPV ++DR +LY Sbjct: 70 NSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRK---TTSNLYT 126 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN G + +L ++G P N++E+ G G+S I+R KGF + +K PN+KI Sbjct: 127 CYVGADNYQIGYMASQYLGNTISG-PANILEVMGLPGSSPTIERNKGFNDGLKKFPNLKI 185 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 GD+ + + + K + +I +V+AHND+M A K+ G+ + Sbjct: 186 KSQVYGDWMKPNAERQLS---KISDQLNDIDVVFAHNDNMAFAAQSVFKKLGIASQAKFI 242 Query: 244 TGSIDGVP 251 ID P Sbjct: 243 --GIDATP 248 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 148/295 (50%), Gaps = 9/295 (3%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ 62 K+L + SA + AA L +G S + + A N ++ A+ + + ++I DG+ Sbjct: 2 KKLALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIEDGK 61 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDKSL 121 + Q+ +++F+A GVDAI + PV + +A+ A IP+ ++R I+V Sbjct: 62 NEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLPD 121 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN--AP 179 V ++ + G L + + + + GK NVV + G + AI R K + IK Sbjct: 122 NQAFVASNEEVSGTLQTEEVCRLLGGKG-NVVVMMGELSNQAAIQRTKDIHDVIKRKECS 180 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 +K++ Q+ +++R KG ++M +++ A G V ++ND+M IGAIQA+K +G K Sbjct: 181 GMKVVAEQTAEWSRLKGNDLMTNWLSA---GLEFDAVISNNDEMAIGAIQALKASGRKMD 237 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKL 293 ++ G ID PD AM G+ + +V + G A DA + K + +K+ Sbjct: 238 SVVVAG-IDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKV 291 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 141/276 (51%), Gaps = 11/276 (3%) Query: 1 MWKRLLIVSAVSAAMSS-MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K ++ +A++ MSS +A A + FS + A A++ G+ L++ Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q Q+ + + + +G ++P + E +DA++PV LDRS+ K Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120 Query: 120 SLYMTTVTADNILEGKLIGDWL-VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-N 177 + A+N G+ IGD++ + NG ++V L G G+S I+R +G +++K Sbjct: 121 VPHF---GANNYKGGQAIGDFVKARFPNG--ADIVLLTGQPGSSSNIERTQGIRDSLKAG 175 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 +++ Q+G++ RS+G ++ES + + K ++ + NDDM +GAI+A++ GLK Sbjct: 176 GSKYRLVADQTGNWMRSEGMRIVESVLPSLP--KRPQVILSANDDMALGAIEALQSQGLK 233 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMA 273 PG+ ++TG D VP+ + DG A+ + P A Sbjct: 234 PGEVMVTG-FDAVPEALARVRDGWLAATADQRPGYA 268 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A K + L+ D Q QI V+ F++Q VDA+ + PV + + + A +A++P+ Sbjct: 48 ARKENVQLQFEDAQGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLV 107 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 ++R D + +TTV +++I G+L +L +++ GK + + G + + DR Sbjct: 108 YVNRHPDERVLPKGVTTVASNDIEAGQLQMRYLAEKMGGK-GTIALIMGDLAQNSTHDRS 166 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 +G + +K+ P I I+ Q+ ++ R+KG ++ +++ A G+ + A+ND+M IGA Sbjct: 167 EGVKQVLKDYPGITIVEQQTAEWQRNKGMDLTSNWLLA---GRTFDAIVANNDEMAIGAA 223 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 A+++AG G+ + G IDG+PD A+ G ASV P Sbjct: 224 MALQQAGKAKGEVAIVG-IDGLPDGLAAIKRGMLAASVFQDP 264 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 17/249 (6%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A+++G L + + Q+ + ++QGV A+ + P+ + P +++A IPVF Sbjct: 93 AKEQGFDLVQTNANGDAQQQVNDAINLLSQGVTALVLNPIDSKAIIPAVEKANAMNIPVF 152 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEG----KLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 LDR D + V +DN+ G K I D L K NVV+L G VG + A Sbjct: 153 TLDRG---SDGGKVTSFVASDNVALGQTAAKWIADQLTKRYGSAKGNVVDLIGLVGTTAA 209 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 DR+KGF++ I P+IK++ Q G F + K M + ++ I V+ NDD Sbjct: 210 TDREKGFSDEIAKYPDIKVVARQEGAFDQEKSLNAMTNILQKY---PQIDAVFGANDDNT 266 Query: 225 IGAIQAIKEAG-LKPGKD---ILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDA 279 +GA +AI AG KP D IL DG A+ G+ +A++ P MA + Sbjct: 267 VGAEKAIDNAGRYKPLDDKQHILVIGADGTAQALSAIRAGKQDATISQNPIQMAAKSLQF 326 Query: 280 LEKY--KKD 286 + Y KKD Sbjct: 327 VADYTAKKD 335 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 12/224 (5%) Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 V EAE+ + + D + + QI V +AQGVDAI PV E ++ A+ A Sbjct: 67 VQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQGVDAIMAIPVDLIATEFIVDRAQQA 126 Query: 104 EIPVFLLDR-SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGAS 162 +PV L++R S++ +D V +D++ G + + + + GK + + G +G + Sbjct: 127 GVPVVLINRDSVERED-----AYVGSDSLQAGTIQMEEVAAVLKGKG-KIAIMNGQMGHT 180 Query: 163 VAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDD 222 I+R G + + P ++++ +G ++R KGKE+MES+I++ G+ V A+ND+ Sbjct: 181 AQINRTLGNKQVVDQYPGMEVVIEGTGGWSREKGKELMESWIES---GQTFDAVVANNDE 237 Query: 223 MVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 M IGAI A +EAG+ +++ IDG PD M G+ SV Sbjct: 238 MAIGAIMAAEEAGIV--DELVFAGIDGTPDALDYMSKGKLTISV 279 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 17/251 (6%) Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 Q+ + + + VD + + + A P +K+AK+A IP+ LDR + +D + ++ T Sbjct: 86 QLSDIEDLITKKVDILIVNALDADAIVPAVKKAKEANIPIIFLDRGANSEDMTTFLET-- 143 Query: 128 ADNILEGKLIGDWLVKEVNGKPCN---VVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 DN+ G+ + ++K + K N VVE++G G S A DR KGF + +KI+ Sbjct: 144 -DNVKMGEQAAELILKALKDKGLNGGNVVEIEGLQGTSAARDRGKGFHNVMDKHKEVKIV 202 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG-LKPGKD-- 241 Q+GDF + K VM++ ++A I V+ HNDD +GA +AI + +KP D Sbjct: 203 AKQAGDFNQEKSMNVMQNILQAN---PKIDAVFGHNDDCTVGAEKAIIASNRMKPAGDKE 259 Query: 242 -ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK--DGTMPEKLTLTKS 298 I IDG+ +++ G + S+ P G A+E K G EK TK Sbjct: 260 HIFVVGIDGINQAIESVKKGNIDVSISQDP--IGMGVQAVEVGLKAIKGEQVEKHIYTKF 317 Query: 299 TLYLPDTAKEE 309 D A +E Sbjct: 318 FPITKDNATDE 328 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 142/302 (47%), Gaps = 19/302 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAA---------PLTVGFSQVGSESGWRAAETNVAKSEAEK 51 M K +++ ++ A+S+ A +A P+T+ S + ++EA+ Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 52 RG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 G + + +DGQ QI + + + QGVD I IAP AT PVL+ A I V + Sbjct: 61 LGNVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTI 120 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 170 DR ++ + + V ADN++ + G+ V+++ + ++ LQG G A DR KG Sbjct: 121 DRPVNGVPE--VIANVAADNLIGAQRQGEA-VEKLFPQGATIINLQGIPGDKTANDRSKG 177 Query: 171 FAEAIKNAPNI-KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 + + P + K + Q+ F R +G V E+ + N + + A NDD +GA Q Sbjct: 178 VHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPPTV--IVAGNDDSALGAAQ 235 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGT 288 A++ GLK GK + G DG D KA+ DG +V+ P G A L Y + G Sbjct: 236 AVEARGLK-GKIAIFG-YDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIRTGA 293 Query: 289 MP 290 P Sbjct: 294 RP 295 >UniRef50_C4L3Z3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z3_EXISA Length = 312 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 14/232 (6%) Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 S + +GV+AIF+ + T +P L+ AK IP+ +DR I D +T+V +DN+ Sbjct: 85 SLIDRGVEAIFLTTLDDTFIQPSLERAKRKNIPIIAIDRMI---DHPSVLTSVVSDNVDI 141 Query: 134 GKLIGDWLVKEVN--GKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGD 190 G++ + + + N +P VVE++GT +DR G E K + + +II S +G+ Sbjct: 142 GRMAAEQIAAKYNELDRPIRVVEVRGTPKVRSTMDRSLGIREYEKQHGDDFQIIASITGN 201 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 + + + M +++ E V++HNDD G ++A++ GL D S+DG+ Sbjct: 202 YDTFQAEIEMSRWLEEE---IPFDAVFSHNDDNTFGVVRALESHGL---TDKTIVSVDGI 255 Query: 251 PDIYKAMMDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 DIY + +G+ NA+V +PN M F ALE++ +G K + S LY Sbjct: 256 SDIYPLIQNGKVNATVVQSPNEMMEVGFKALEQH-LNGKKIAKHYYSSSYLY 306 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 136/271 (50%), Gaps = 14/271 (5%) Query: 46 KSEAEKRGIT---LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 102 + EAE+ G T KI DG+ Q+ + V GVD I I PV G +K+A+ Sbjct: 21 QKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGIIIEPVSTDGIVKAVKDAEK 80 Query: 103 AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGAS 162 + V +L++ I D++ T V ADN G + ++++++GK N+VEL G +G+ Sbjct: 81 VGVKVVILNQRI--SDQNAADTFVGADNESTGAALMKKVMEDLDGKG-NIVELLGPMGSD 137 Query: 163 VAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDD 222 + R KGF + P++K+I S S D+ +K + E+++ + +I V A ND Sbjct: 138 GQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENWLTS----SDIQAVVAQNDG 193 Query: 223 MVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV-ELTPNMAGPAFDALE 281 M +GA QAIKEAGL I +D D A+++G +V + T N + D Sbjct: 194 MAVGAAQAIKEAGLTD--KIKVYGVDATSDGLNAIVNGGMTGTVSQGTENQGKISADLCS 251 Query: 282 KYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 ++P+++ T + +Y + E L+K Sbjct: 252 NLIYGQSVPKEVIAT-NVVYTKENVNEILKK 281 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 12/250 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRSFVAQG 79 + +G SQ WR + +EA+K + I + D Q K + + G Sbjct: 38 SVEYVIGMSQANLYEPWRISMNEEISNEAKKYKNIKIVYKDAGGDTNKQKKDIDELLNSG 97 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 +D + ++ + PV+ +A + +PV +LDR+++ + S+Y + DN G+ G Sbjct: 98 IDLLIVSINDSEKLTPVVSKAYKS-VPVVVLDRAVEGYNYSVY---IGPDNEKIGREAGK 153 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 +V + V+E+QG + + IDR KGF EAIK NIKI+R+ G++ + + ++ Sbjct: 154 MVVDLLGNSEGRVIEIQGLLNSHPDIDRSKGFREAIKQCDNIKIVRTVIGEWQKDEAEDK 213 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP----GKDILTGSIDGVPDIYK 255 +E +K + +NI +++AHND M +GA +A + G+ G D LTG G+ + + Sbjct: 214 IEELLKED---RNIDIIFAHNDYMALGAYKAAYKLGINNIKIIGVDGLTGENGGLDLVSR 270 Query: 256 AMMDGEANAS 265 ++ G S Sbjct: 271 GILQGTFTCS 280 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 22/278 (7%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRA-----AETNVAKSEAEKRGITLKI 58 RL+ V + A + AA +G S ++ GW A A A +A+++ I + Sbjct: 9 RLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDIEFFV 68 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 Q+ V + +G+DA+ I P + V++EA D I ++DR + Sbjct: 69 V-ASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDRELAHPA 127 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKK--GFAEAIK 176 ++++ + DN G++ WL KE++GK NVV ++G + I++++ F + I Sbjct: 128 QNVF---IAGDNAGLGRVGAQWLAKEMSGK-GNVVVIEGL---QIPINKQRVDAFNDVIA 180 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 PNIKI+ SQ GD++ K VME+F++ I V+ +DDM+ G ++AI+E+G Sbjct: 181 GYPNIKILDSQPGDWSTQKALSVMENFLQKH---PKIDAVWCQDDDMLKGVLKAIEESGR 237 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNM 272 K +L G+ G DI + + G A+V +P+M Sbjct: 238 TDIKTVLGGA--GSKDIIEMIQSGNKMVRATVTYSPSM 273 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 11/228 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 T+G SQ +R + AEK ++ AD + Q+ V +F+ + VD + Sbjct: 50 TIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKVDLL 109 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 I+P A V+K+A + IPV +LDR + + + T + ADN+ G+ G++ Sbjct: 110 MISPNEAAPLTDVVKKAYNEGIPVVVLDRKV---EGEAFTTYIGADNVQIGRQAGEYFKN 166 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 + + +V+L+G G++ A +R+KGF E I + I+++ + G++ RS G++ M++ Sbjct: 167 TLLPQGGKIVQLKGLSGSTPAAEREKGFMEGIAGS-KIEVVDTADGEWERSVGQQKMDAL 225 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 +KA +I VYA ND M GA A + AG KD+ IDG+P Sbjct: 226 LKAH---PDIQAVYAQNDPMAEGAWLAAQAAGR---KDLKFVGIDGLP 267 >UniRef50_B1G538 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G538_9BURK Length = 384 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 9/221 (4%) Query: 23 PLTVGFSQVGSESGWRAA-ETNVAKSEAEK--RGITLKIADGQQKQENQIKAVRSFVAQG 79 P +GFS G WR + ++ K+ A+ + L I +G Q ++ +++G Sbjct: 58 PYVIGFSNAGLGDSWRVVMQHSLMKAAADHPDQIRQLLITNGNMDDAKQAADIQDLISRG 117 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 VD + ++ +PV+ A IPV ++DR I + +++ VT + + G++ Sbjct: 118 VDLLIVSANTQKALDPVVTRAMKQGIPVVMVDRRISSDN---FVSFVTGSDAMMGRVWAQ 174 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 W+V++++GK NV+ L G G+SV+ DR+ + P IK++ + D++ K K+ Sbjct: 175 WIVEKLHGK-GNVIMLAGQAGSSVSADREAAAHQVFSQYPGIKVLDTVYSDWSPVKAKQQ 233 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 M++ I G NI V+ + V G+I+A AG KPG+ Sbjct: 234 MQAMI--AKYGHNINAVWCAHGLPVAGSIEAFVAAGFKPGE 272 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 10/227 (4%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +GFSQ WR + K E TL D + QI +++ + QG+D + Sbjct: 52 IGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQISQIQALIDQGIDLLI 111 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 ++P + V+++ IPV LLDR I+ + + Y + DN+ G+L G ++ Sbjct: 112 VSPNEVAPFAKVIEDVFKRGIPVILLDRKIETESYNAY---IGGDNVEIGRLAGVFIGNH 168 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFI 204 + GK +VE+ G +S A +R +G E ++ P I++++ +G + R V+ + + Sbjct: 169 LKGK-GRIVEIWGLPSSSPAQERHRGLLEELRKYPGIQVVKELNGQWERDTVGRVVAAEL 227 Query: 205 KAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 N K++ +V+AHND M +GA K+ G++ D + ID +P Sbjct: 228 ---NTLKDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFV--GIDALP 269 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 21/257 (8%) Query: 2 WKRLLIVSAVSAAMSSMALAAP---LTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLK 57 + +LL+ +S S + + VGFSQ + WR K EA I L+ Sbjct: 3 YLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDIILE 62 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 I D + NQ+ + F+ GVD + ++P+ + P +++A A IP ++DR I+ + Sbjct: 63 IKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIEGQ 122 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + Y V A+NI G+ +++ +GK +++E+ G G+S A +R GF + + + Sbjct: 123 NFTAY---VGANNIEIGRNAAKYILSHSSGK-ADIIEITGQEGSSPAYERSMGFKKTLDS 178 Query: 178 APNIKIIRSQSGDFTR----SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 P +K+ GD+ + SK ++++S +KA + ++AHND M +GA + + Sbjct: 179 VPELKVRHVIKGDWEKTSIQSKLSDLLDS-VKAPD------YIFAHNDRMALGAWEVARS 231 Query: 234 AGLKPGKDILTGSIDGV 250 L+ +I+ +DGV Sbjct: 232 KSLEEEINII--GVDGV 246 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 145/306 (47%), Gaps = 23/306 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-------LTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 M +R ++++V+A +M LAAP LT+ S + N K+EA+ +G Sbjct: 21 MNRREFLLTSVAA--GAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQG 78 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + L +DGQ Q + + + Q V+AI I+P+ P ++EA A +PV +DR Sbjct: 79 VNLTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRR 138 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGFA 172 +D + V ADN+ G+ +V NG + LQG GA AIDR KG Sbjct: 139 VD--GVQGILAHVGADNVKGGEAEASAMVAAFPNG--AKLFHLQGQPGAGPAIDRNKGVH 194 Query: 173 EAIKNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 + + +II Q+ +F R++ V E+ + A NGK ++ A NDDM +GA++A Sbjct: 195 NVLDPLKDKYQIIFEQTANFARAEALSVTEAGLAA--NGKPDAIICA-NDDMALGALEAC 251 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMP 290 D+ D +P+ A+ DG+ +VE P + A Y K+ T P Sbjct: 252 AARNF---TDVKIYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEP 308 Query: 291 -EKLTL 295 EKL L Sbjct: 309 KEKLVL 314 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 36/313 (11%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-------------LTVGFSQVGSESGWRAAETNVAKS 47 M KR L V V A + S L +T+GFS + + A + A+ Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 A+++G+ L +AD + QI + +AQ VDA+ + P G PV+ A +A+IP+ Sbjct: 61 AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAID 166 + + D+ DK+ Y V + G+++G W V +G ++E G +G S + Sbjct: 121 IICNG--DIADKN-YTAFVGCTDQESGEILGTWFNDNVEHGSQICIIE--GPMGQSGQVG 175 Query: 167 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 R GF E + N +++ Q+ ++ R + + E ++ G + + NDDM +G Sbjct: 176 RYAGF-EEVGMLDNFEVLSCQTANWKRDEAMALAEDWLTTY--GDKLKAIVCENDDMAMG 232 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDAL------ 280 A+ A K AG D++ G +DG+ D +A+ DGE SV + AG A+ Sbjct: 233 ALSACKAAGR---TDVVIGGVDGLEDAIQAVKDGELGVSV--LQDSAGQGEGAVEVALQI 287 Query: 281 ---EKYKKDGTMP 290 E Y+KD +P Sbjct: 288 INGEDYQKDTRIP 300 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 133/281 (47%), Gaps = 16/281 (5%) Query: 1 MWKRL--LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M KRL L+++ V+ +MS A A PL +GF+ + T K A+++G TL Sbjct: 1 MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLIT 59 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D + QI V ++QG++ + + P + + AK A +P +LD D+ Sbjct: 60 TDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDS--DIAL 117 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGF----AEA 174 ++ +T V A+N LIG++ V + KP N + L G G V R+ F AEA Sbjct: 118 EAPVITRVQANNAKNNNLIGEYAVGQFGDKPMNCIFLSGNQGNLVGQARRDNFLLGVAEA 177 Query: 175 I---KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 N N+ + G++ + G + ME I A+ G I VY+ DDM +GAI+A+ Sbjct: 178 QLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQ--GDKINCVYSEMDDMALGAIRAL 235 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNM 272 K A ++ + DG +A+ GE A+ P++ Sbjct: 236 KAA--NKLDNVKVYAHDGYKKGLEAVKKGELQATASNNPDL 274 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 14/239 (5%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 AE+ G L + D QQ +NQI + + +AQ VD I +A V + P ++ DA IP+ Sbjct: 69 AEELGCDLVMLDAQQDAQNQITQIENLIAQKVDVIIVAAVDSDAILPAIEMCDDAGIPLV 128 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 ++ + ++ Y V D++L G+L + E+ G+ NVV L+G +G S I R Sbjct: 129 GVNMLFNTEEPYHY---VGPDDVLAGELEMQNAIDEIGGEG-NVVILEGPIGQSAQIQRL 184 Query: 169 KGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 +G + K I ++ Q+ +++R + ++E+++ E I + AHND+M +GA Sbjct: 185 EGNQNILDKYEGKINVLADQTANWSREEALTLVENWL--ETFSGKIDAIVAHNDEMALGA 242 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-----AFDALE 281 IQA++ AGL K ++TG +D + D A+ DG +V + G A+D LE Sbjct: 243 IQALEAAGLTD-KIVVTG-VDAILDGCNAVKDGTLLGTVYQDAGLEGSEAVQKAYDVLE 299 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 134/299 (44%), Gaps = 21/299 (7%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQ--ENQIKAVRSFVAQGVDA 82 T+GF + + + N + GI +I G Q E Q+ + ++V+QGVD Sbjct: 82 TIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQGVDG 141 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID-------VKDKSLYMTTVTADNILEGK 135 I + P + G L+E + A IPV LD +D KD Y T DN + G+ Sbjct: 142 IILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGT----DNYVGGQ 197 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L+G+ V ++ C L+G G + DR GF + K + ++ Q ++ + Sbjct: 198 LVGEE-VAQMYPDGCKTAILRGVQGQTNDDDRYNGFLD--KAGDVVDLVAEQHANWETDQ 254 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G +++ I+A K++ ++Y ND M IGA QA+ EAGL I S DGV + + Sbjct: 255 GYTAIQNIIQAN---KDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIF--SYDGVTEGLQ 309 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 ++DG+ ++ P G A G E T L + AK+ LE+ K Sbjct: 310 YVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSENAKQTLEETK 368 >UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD9_9CLOT Length = 369 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 16/267 (5%) Query: 43 NVAKSEAEKRGITLKI-----ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVL 97 N AK + E +G+ +++ A Q + S + QGVDAI +A P L Sbjct: 97 NGAKKQIEDKGLDIELLVQAPASNTSTITEQGNIMESMIQQGVDAIALATESDNSMLPYL 156 Query: 98 KEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQG 157 + A +A+IPVFL + + KD Y++++ D G IG ++ + K + L+G Sbjct: 157 RAAAEADIPVFLFNMTELDKDNIYYVSSIGYDQYNAGLEIGKYVAEHYGDKEVKLAILEG 216 Query: 158 TVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVY 217 G V R GF I+ NI+I+ SQ+ D+TR KG+ V ES + + +I +++ Sbjct: 217 YAGI-VNTMRIDGFKAGIQGKDNIQIVASQTADWTREKGQSVTESILTSN---PDINLIF 272 Query: 218 AHNDDMVIGAIQAIKEAGLKPGKDILTGSI--DGVPDIYKAMMDGEANASVELTPNMAG- 274 D+MV+G + +IKE GL D + DGV A+ + E A++++ G Sbjct: 273 GDYDEMVLGGLVSIKERGLLDQIDTIGYGCTKDGVA----AIENNEMTATIDVGEYGTGI 328 Query: 275 PAFDALEKYKKDGTMPEKLTLTKSTLY 301 DA+ + +G EK+ S +Y Sbjct: 329 DIIDAVNDFCIEGKSVEKVINRPSKVY 355 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 13/258 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 + VG + ++ + +N AK +A + G+ LKI DG QI V + ++ GVDAI Sbjct: 54 IVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETMISDGVDAI 113 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 + P A + +A A IPV ++ +D + + Y V + ++ G+L + Sbjct: 114 ILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSY---VGSKDVYAGELEMQAIAD 170 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 ++ GK N+V L G +G S ++R +G +K P+IK++ ++ +++RS+ VME++ Sbjct: 171 KIGGK-GNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTVMENW 229 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 ++A + I V A ND+M +GA +AI+ L DI T +DG+ D A+ G Sbjct: 230 LQAFD---KIDAVVAENDEMALGARKAIEAKKL----DIPTIGVDGITDALDAVEKGTLI 282 Query: 264 ASVELTPNMAGPAFDALE 281 A++ + AG ALE Sbjct: 283 ATI--FQDGAGQGSKALE 298 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 115/215 (53%), Gaps = 10/215 (4%) Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 G+ +E Q+ ++ V +GV+A+ ++P+ P ++ A +A+IPV+ ++ + D Sbjct: 136 GESDEEGQLSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGAD-- 193 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNAP 179 V +++ +G+L +W+ +++ G +V + G +V +R +GF E N Sbjct: 194 ---MFVGPNSLEQGQLAAEWVNEKLGGSG-DVAIVMGMAKTAVTRNRTQGFEEWFADNDS 249 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 +I+++ Q+ D+ RS+ K+V +F+K + K I + +ND M +G I+A+KEA L Sbjct: 250 DIQVVAKQNADWDRSQAKDVAATFLKTYPDLKAI---FCNNDVMALGVIEAVKEADLTLN 306 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 KDI DG + Y ++ E A+++ P G Sbjct: 307 KDIYVIGCDGQSEAYDSIRANEMAATIDTFPYYEG 341 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 11/205 (5%) Query: 50 EKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFL 109 E+ + L + D Q QI +++F+A+G D I + PV P+ E +AEIP+ Sbjct: 81 EELNVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPVQLESLIPIAMECNEAEIPIMT 140 Query: 110 LDRSI---DVKDKSL-YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 +DR + D KD + +T V D++ G+ G+ LV ++ G ++ +QGT+GAS + Sbjct: 141 VDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGE-LVHQLLGDEGSIALIQGTLGASSQV 199 Query: 166 DRKKGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 R++G E + +NAP I+I+ +Q+ D +S+ V ++F+ G+ I + A + Sbjct: 200 LRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITVTQNFLTRFAKGE-IDAIVAQDPYSA 258 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDG 249 +GA+ AIK A +D L G++ G Sbjct: 259 LGAVDAIKSA----SRDELLGTVIG 279 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 5/240 (2%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 +TL+ DGQ + Q+ V+SF+ VD I + PV G + + A+ A++P+ L+R Sbjct: 52 MTLQFEDGQGAVDKQLSQVQSFINGKVDVIIVNPVDTQGTKNMSDAARKAKVPLIYLNRM 111 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGFA 172 ++ + +D I G+L +L V + K N+ ++G + R +G Sbjct: 112 PSDSKMGDGISYIGSDEIEAGRLQMGYLADMVKDRKNVNIAIMKGLLSNDATRFRTQGAK 171 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 E I PN+ ++ + + R G +M ++I G+ I ++ A+ D+M IGA AIK Sbjct: 172 EVIAKHPNMHVVMEDTAKWMREDGMNLMNNWILT---GQKIDILSANADEMAIGAAMAIK 228 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV-ELTPNMAGPAFDALEKYKKDGTMPE 291 GL GKDIL G DG P+ +A+ G +V + + A A D EK K T+ + Sbjct: 229 SNGLNIGKDILVGGTDGGPNGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKD 288 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 16/254 (6%) Query: 3 KRLLIVSAVSAAMSSMALAAP----LTVGFSQVGSESGWRAAETN-VAKSEAEKRGITLK 57 KR+ I+ V + + L A + +G SQ WR N + +++ + + + L Sbjct: 2 KRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCG-GVWREKVNNEMRQAQYQYKNVDLL 60 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + + Q + + S +A+ VD I +AP P ++ A A IPV L DR + Sbjct: 61 FTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKTP 120 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 Y ++ DN+ G+ + +L +++GK VVE+ G AS I+R +GF E +KN Sbjct: 121 H---YTASIGGDNVEAGREVARFLASKLDGKG-TVVEITGLKDASPVIERHRGFHEVMKN 176 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 P IK++ +S ++ + +E+M+ ++ + G + V+ H+D IGA + G+ Sbjct: 177 YPGIKVVTLES-NWKLERAQELMKQYL---DKGGHADGVFGHSDLGAIGAFLEAERRGID 232 Query: 238 PGKDILTGSIDGVP 251 K +L IDG+P Sbjct: 233 --KQMLIVGIDGLP 244 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 139/287 (48%), Gaps = 13/287 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK--RGITLKIADG 61 R ++ + V S ALA L +G S VG + A + A + G+TL++ D Sbjct: 14 RAVLFATVLCLAGSTALA-DLRLGVS-VGQFDNYIAYLVRAMQERARQVPGGVTLQVEDS 71 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 Q+ V SF+AQ VDAI + P + + A A IP+ L+ +V++ Sbjct: 72 GSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFPA 131 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 + V D G++ ++L +++ GK ++ L G + R G + + P I Sbjct: 132 GVVFVGTDERRLGQMQMEYLAEKMGGK-GDLAILLGRLAHDDTRKRTAGVKDVLARYPQI 190 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 +++ QSGD+ R KG ++ +++ ++G+ V A+ND+M IGA A+++AG ++ Sbjct: 191 RVVEEQSGDWQRDKGLDLTNNWL---SSGREFDAVVANNDEMGIGAAMALRQAGR---RE 244 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFD-ALEKYKKD 286 + G IDG PD A+ G+ ++ P M A D AL +KD Sbjct: 245 VSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKD 291 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 15/251 (5%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG------ITLKIADGQQKQENQIKAVRSFV 76 PL +GF ++ ++ V K E +KRG + ++ Q ++QI+A+ +++ Sbjct: 70 PLKLGFLPTAMDTYYQRVLAGV-KEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWI 128 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 G+DAI +A P ++ A +A IPVFL + D Y++ V D G+ Sbjct: 129 NDGIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPF--ADNPYYVSDVGYDQSDGGRA 186 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 W+V K + L+G G + R KGF E I PN KI+ Q + R++G Sbjct: 187 QAQWIVDTYGDKEVKIGILEGLPGPHTS-QRMKGFNEIISKHPNFKIVAQQPAGWVRAQG 245 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 V E+ A + + + +Y D+M +G +QA+K GL GK + G + + + A Sbjct: 246 LSVTENMFTANPDIEVLVALY---DEMALGGLQALKAKGLN-GKVAIVG-YENMKEANAA 300 Query: 257 MMDGEANASVE 267 ++ G+ +A+V+ Sbjct: 301 ILTGDFSATVD 311 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 112/213 (52%), Gaps = 8/213 (3%) Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV-VATGWEPVLKEAKDAEIPVFLLDRS 113 TL + DG+Q Q + + + DAI PV + G EP+ + AK A IPVF + Sbjct: 65 TLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPI-ERAKAAGIPVF--GSN 121 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 V LY + ++++ G+++ ++ + GK VV L+G +G S + R +G Sbjct: 122 TVVSKTELYDAYINSNDVEAGEMLAKAVIDKA-GKDAKVVVLEGMLGQSAQVQRLEGINN 180 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 +K + I+ + +++R++ +ME+F+ + +G + V A ND+M +GAI+ I+ Sbjct: 181 VLKQNSGVTILEQNTANWSRAEAITLMENFLTS--HGDQVQGVLAENDEMAVGAIEGIRN 238 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 GL P K + G +DG+ D +A+ GE S+ Sbjct: 239 HGLDPKKLPVAG-VDGIKDALEAVKRGEQTMSI 270 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 16/252 (6%) Query: 26 VGFSQVGSESGWRAAETNVAKSEA----EKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 +G + + GW A A+ +A E I I Q+ V +AQGVD Sbjct: 30 LGLAMPSATHGWMGALIQNAEDQAKALVEDGTIDDYIFTTADNPSAQVNNVEDLIAQGVD 89 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI + P+ + P+ + ++A IP+ ++DR + D + V DN G G++ Sbjct: 90 AIVMLPIESDALSPIALQVEEAGIPLVIVDREL-TNDAA--TVVVKGDNYGAGVNAGEYF 146 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 ++++ G VVE+ G SV R GF EAI+ + +I+I+ SQSG+F+ +VME Sbjct: 147 MEQLGGN-GKVVEIAGP-SNSVTQQRSDGFREAIEGS-DIEIVASQSGEFSTETSLQVME 203 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM-DG 260 + + ++ I VY +D M +G +QAI EA + +TG + G D+Y+ +M DG Sbjct: 204 NILTSQ---PEIDAVYTQDDGMALGVLQAINEAN-RTDIQFITG-VAGSKDVYEIIMDDG 258 Query: 261 EANASVELTPNM 272 A+ +P M Sbjct: 259 LITATFLYSPLM 270 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 17/235 (7%) Query: 2 WKRLLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAA-----ETNVAKSEAEKRGIT 55 + L + A+ A ++ P +G SQ SE WR + VA +A + Sbjct: 15 YHILFLYFALFACLACQRERNPRYVIGVSQC-SEDLWRQTMNEELKREVALYQANTELLI 73 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 + D KQ I + F+ Q VD + ++P + PV+++A IPV L+DR I Sbjct: 74 RSVKDDTPKQ---IADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIA 130 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + + Y V A+N GK G + + + GK N+ E++GT G++ +R KGF +A+ Sbjct: 131 TESYTAY---VGANNYQIGKEAGHYAIGILKGK-GNIAEVRGTKGSTSDAERHKGFVDAL 186 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 NAP ++I+ G+F ++ K M+ + NI +V+A ND M G +A Sbjct: 187 NNAPEVRIVAETWGNFLKADAKVQMQQLFQQH---PNIDLVFAMNDPMAAGTHEA 238 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 10/236 (4%) Query: 4 RLLIVSAVSAAMSSMALA-APLTVGFSQVGSESGWRAAETNVAK-SEAEKRGITLKIADG 61 L+I A+ ++ A +G SQ SE WR + K E + +K+A Sbjct: 6 HLIIYVAIIVLLTGCAQKPRKFVIGVSQC-SEDIWRDKLNDELKMGEYLNDSLIVKLASS 64 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 Q K V F+ +GVD + ++P + ++ A D IPV L DR + DK Sbjct: 65 NDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTN-SDK-- 121 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 Y + DN GK +G ++ +++ GK +VE+ G G+S A++R +GF +AIK P + Sbjct: 122 YTAFIGCDNYTIGKSMGTFIAQQLQGKG-RIVEISGLEGSSPALERHRGFMDAIKPYPGL 180 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 +++ S+ G++ G + M+ +K ++ V+AHND + GA A ++ +K Sbjct: 181 QVVASEEGNWKEEGGIQAMKRILK---QTQDFDYVFAHNDCLAWGAYVAARQMRVK 233 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 140/272 (51%), Gaps = 22/272 (8%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLT----------VGFSQVGSESGWRAAETNVAKSEAE 50 M R ++A++A S+M L A L + F + G +A T + A Sbjct: 1 MINRRTFIAAIAA--STMLLGADLAAAQEKIRIAALSFGEAGEYM--KAWSTEIQNHPAV 56 Query: 51 KRG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFL 109 K G + + + DG+ Q + + + Q +AI +AP P + +A +A++PV + Sbjct: 57 KEGKVEITVFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVIV 116 Query: 110 LDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKK 169 K+ Y ++ D+ G++I + + K + N+V ++G +G S I+R+ Sbjct: 117 SALKTSSKN---YTASIIVDDREGGRIIAEEMAKRLPSG-GNLVLMEGPIGQSAQIERRA 172 Query: 170 GFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 G ++ N+K++ +SG+++R++G+ +ME+++ A + I V A ND+M +GAI+ Sbjct: 173 GVDAGLEAHSNLKLLADKSGNWSRAEGQALMENWLSAYPD--QINGVLAENDEMALGAIE 230 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 A+K A + K + +IDG+PD +A+ +GE Sbjct: 231 AMKAANVDLSK-VPVIAIDGIPDAKRAVENGE 261 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 6/262 (2%) Query: 1 MWKRLLIVSAVSAAMSSMA-LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKI 58 M K LL + ++S A +A +G W+ + + EK + +K+ Sbjct: 1 MKKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKL 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 AD Q+ V++F+ Q VDA+ + P T + + AK A IP+ +++R + + Sbjct: 61 ADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEH 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + V +D I G++ G+++V + GK + L G +G R +G E Sbjct: 121 MQYVTSFVGSDEIEGGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQH 180 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 NIK++ Q G + R +G + E+ + A N G N+ + ++ND+M IGAI A ++ G+K Sbjct: 181 KNIKVVSKQEGRWERDRGLAIAENVL-AGNKGINV--IVSNNDEMAIGAILATRKLGIKD 237 Query: 239 GKDILTGSIDGVPDIYKAMMDG 260 +DI +D PD + + G Sbjct: 238 -EDITIVGLDATPDALEYLGKG 258 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 14/244 (5%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQKQEN--QIKAVRSFVAQGVDAIFIAPVVATGWE 94 + AA + A +E +K+G+ +++ G + ++ + + + QG + + PV AT Sbjct: 33 YWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNCFGVVPVNATNVI 92 Query: 95 PVLKEAKDAEIPVFLLDRSIDVKDKSL----YMTTVTADNILEGKLIGDWLVKEVNGKPC 150 L +IP+ LD ID Y + + +DN+ G+ G+ L+K + GK Sbjct: 93 TPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAGEGLLKLMGGK-G 151 Query: 151 NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNG 210 V LQG G I+R+KGF E K A + I+ +Q D+ ++KG+ V E+ +KA Sbjct: 152 EVAILQGIAGEQNGINRQKGFTE--KVAGKLDIVATQPADYDQAKGQTVTEAILKAH--- 206 Query: 211 KNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 I ++A ND M +GA QA++ AGL I+ S+DG+ +A+ G + ++ P Sbjct: 207 PKITGIFAANDTMGLGAAQAVRNAGLTGKVSII--SVDGISAALEAVKAGTLSGTISQYP 264 Query: 271 NMAG 274 G Sbjct: 265 YAEG 268 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 21/237 (8%) Query: 2 WKRLLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + L + A+ A ++ P +G SQ SE WR +E KR + L AD Sbjct: 6 YHILFLYFALFACLACQRERNPRYVIGVSQC-SEDLWRQT-----MNEELKREVALYQAD 59 Query: 61 GQ-------QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + QI + F+ Q VD + ++P + PV+++A IPV L+DR Sbjct: 60 AEVLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 119 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 I + + Y V A+N GK G + + + GK N+ E++GT G++ +R KGF + Sbjct: 120 IATESYTAY---VGANNYQIGKEAGLYAIGVLKGK-GNIAEVRGTKGSTSDAERHKGFVD 175 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 A+KNAP ++I+ G+F ++ K M+ + +I +V+A ND M G +A Sbjct: 176 ALKNAPEVQIVAETWGNFLQADAKTQMQQIFQEH---PHIDLVFAMNDPMAAGTHEA 229 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 16/245 (6%) Query: 45 AKSEAEKRGITLKIADGQQKQ---ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 A++ AE+RG +A G Q + E+QI AV +F+ QGVDAI +AP + L+ A Sbjct: 85 AEAHAEERGDYELLAVGMQNETDFESQINAVENFITQGVDAIVVAPADSRAMVRPLRRAM 144 Query: 102 DAEIPVFLLDRSID---VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGT 158 +A I V D ++D ++ + + + V DN + ++ G+ L E G+ VV ++G Sbjct: 145 EAGITVINFDVALDTGAMEQQGIELAFVGPDNRMGAEMAGNAL-GEALGEGGRVVIIEGN 203 Query: 159 VGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 GA A R+ GF +AI ++++ S++ + + +V + + A ++ V A Sbjct: 204 PGADNATQRRLGFEDAIAT-HGLELLESRTAHWETEEANQVFAAMLTAH---PDLQGVMA 259 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV-ELTPNMAGPAF 277 ND M IG I+A+ AG DIL D VP + + DG A+V + MA A Sbjct: 260 ANDSMAIGVIEALDAAGR---DDILVVGFDAVPAVLPMIEDGRMLATVDQFGQAMAANAI 316 Query: 278 D-ALE 281 D ALE Sbjct: 317 DLALE 321 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 123/275 (44%), Gaps = 16/275 (5%) Query: 45 AKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 102 A+++A+K G L G E Q+ A+ + V QGV I I P +TG +K+A+D Sbjct: 57 AQAQADKDGAQLIAVAGAFDGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARD 116 Query: 103 AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGAS 162 A + V LD + D +D T DN G G W+ + P VV L GT G + Sbjct: 117 AGVVVIALDTATDPEDA--VDATFATDNKAAGVAQGKWVKAALGNTPPQVVMLDGTPGGT 174 Query: 163 VAIDRKKGFAEAI---KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAH 219 V R GF E N+P I + +GD ++K + ME+ ++ + +Y Sbjct: 175 VDTFRHDGFLEGFGLTDNSPEIVGQENTNGD--QTKAQTAMENLLQ---RAPGVNALYTI 229 Query: 220 NDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFD 278 N+ GA QAI+ G + GSIDG + G+ A+V P MA Sbjct: 230 NEPAAAGAYQAIQAVGRA--DQVTIGSIDGSCTGVADVKAGKIGATVMQFPAKMAELGVQ 287 Query: 279 ALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 A+ K+ +DGT P T S L + D LE K Sbjct: 288 AVVKFAEDGTKPSGFNDTGSEL-ITDKPMPGLESK 321 >UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMU2_9FIRM Length = 369 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 21/297 (7%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ-GVDAIFIAPVVATGWEP 95 + A E AK A G++ + Q++ ++ ++AQ G A+F+ +T Sbjct: 65 YWAQEAEGAKLAAASYGVSADVLTCDSDDNKQLQGIKDYIAQYGDKAVFVVDPSSTANTA 124 Query: 96 VLKE-AKDAEIPVFLLDRSID---VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCN 151 + E +++ V +L D KD ++ ++ D+I GK L + + G+ Sbjct: 125 NIAELCEESGNYVAILAHRADGLYPKDYPHFVASLMLDDIAIGKATAKALFESIGGEG-Q 183 Query: 152 VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGK 211 V ELQG +G A +R K F EA+K+ PNI+++ SQ+ +++S+ + E+++ + K Sbjct: 184 VAELQGLLGDDSATNRHKAFEEALKDYPNIEVVDSQTASWSQSEAMTLTENWLVKYPDLK 243 Query: 212 NICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE-----ANASV 266 VY+ ND M +GA++A+K GL GK I+ DG+ A+ DG+ AN Sbjct: 244 G---VYSANDTMALGAVEALKNKGLN-GK-IMVSGCDGIEAALNAVNDGDMVITNANNGY 298 Query: 267 ELTPNMAGPAFDALEKYKKDGTMP--EKLTLTKSTLYLPDTAKEELE---KKKNMGY 318 + A A A T+P E+L K+TL D A + ++ K KN GY Sbjct: 299 MIAGYGASYAIQAALGKLDPTTIPDNERLIFCKTTLVTKDNANDIIDKFIKTKNPGY 355 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 14/234 (5%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIA 59 +W L++ A S +G SQ WR + + EA I L + Sbjct: 10 LWLFLILCFACSPGKKE----KKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEIELVVM 65 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q + QI ++ F+ + VD + I+ PV EA A IP +LDR I+ + Sbjct: 66 DASQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKINSDE- 124 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Y T + ADN G+ IG ++ + G+ ++E+ G G+S A +R +GF +A+ P Sbjct: 125 --YTTYIGADNYEIGRSIGMYISSLIKGE-TTILEIWGRRGSSSATERHQGFVDAMSIDP 181 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 N+K IR G + + E + E ++ +V+AHND M +GA +AI+E Sbjct: 182 NVK-IRELDGYWYKENAYEEVLKLDSIE----DVDIVFAHNDMMALGAREAIEE 230 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 12/276 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAA--PLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLK 57 + K + SA+ +A+ ++A AA P + S + + ++ EK + ++ Sbjct: 5 LLKNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQ 64 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 +A+ + E + V + +A+ VDAI + P + + P ++A+ A IP+ LD +D K Sbjct: 65 VAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAK 124 Query: 118 DKS---LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 L V DN G L L + + GK NV L+G G RK G +A Sbjct: 125 AAEAAGLKFNYVGVDNFNGGYLEAKNLAEAI-GKKGNVAILEGIPGVDNGEQRKGGALKA 183 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 P+IKI+ SQS ++ + V + + A NI ++A ND+M IGA+ A++ A Sbjct: 184 FAEYPDIKIVASQSANWETEQALTVTTNILTA---NPNINGIFAANDNMAIGAVTAVENA 240 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 GL GK +++G DG+P + + G+ +++ P Sbjct: 241 GL-AGKVLVSG-YDGIPLAIEYVKQGKMQNTIDQLP 274 >UniRef50_C2AKV1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Actinomycetales RepID=C2AKV1_TSUPA Length = 336 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%) Query: 45 AKSEAEKRGITLKIADGQ--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 102 AK++A+ +G L G+ E Q+ A+ + V+QGV I I P +TG +K+A+D Sbjct: 59 AKAQADAKGANLVALAGKFDGDNEGQVAAIENLVSQGVKGILITPNSSTGILAAIKKARD 118 Query: 103 AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGAS 162 A + V LD + + D T DN G+L G W+ + G ++ L GT G++ Sbjct: 119 AGVVVIALDTATEPADA--VDATFATDNTEAGRLQGAWVKGALAGAAPKLLMLDGTAGST 176 Query: 163 VAIDRKKGFAEAI---KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAH 219 V+ R KGF + I +NAP I + +GD ++K + ME+ ++ + +Y Sbjct: 177 VSDFRHKGFLQGIGLTENAPEIAGTENTNGD--QTKAQTAMENLLQRVPDAN---ALYTI 231 Query: 220 NDDMVIGAIQAIKEAGLKPGKDI--LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAF 277 N+ G QA K+AG I + GS GV ++ K M+ ++ MA Sbjct: 232 NEPAAAGGYQAAKKAGKAAQLTIGSIDGSCAGVDNVKKGMIGATV---LQFPAKMAQQGV 288 Query: 278 DALEKYKKDGTMPEKLTLTKSTL 300 DA+ + KDGT P T S L Sbjct: 289 DAVVAFAKDGTKPSGFVNTGSQL 311 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 115/219 (52%), Gaps = 8/219 (3%) Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 E ++ + + D Q+ V +F+ Q VDAI + PV ++ +A A IP+ Sbjct: 82 EKTQKDVEVIYVDAMNDASKQLSQVENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPI 141 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 +++R D DK+ V +++I G + + + K +NGK + + G +G I R Sbjct: 142 VVVNRIFDGVDKA--TAYVGSESIKAGIMQMEEVAKLLNGK-GKIAIMNGQMGHEAQIKR 198 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 +G + IK P++K++ + ++ R+KG +ME+++++ GK I V +ND+M IGA Sbjct: 199 TEGNKQVIKKYPDMKVVLEGTAEWDRAKGMSLMENWLQS---GKKIDAVVCNNDEMAIGA 255 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 I A+++ G D++ +D PD + + +G+ +V Sbjct: 256 IMALEDEG--KLDDVIVAGVDATPDALEYVKEGKLKVTV 292 >UniRef50_Q3DJE8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=2 Tax=Streptococcus agalactiae RepID=Q3DJE8_STRAG Length = 213 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A + I++K+AD Q Q V++F++Q VDAI I PV + +K A +A IPV Sbjct: 72 ASNKKISIKVADAQDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVI 131 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 L+DR + +TTV +DN+ GK+ D+ VK++ GK EL G GAS +DR Sbjct: 132 LMDRG---SEGGKVLTTVASDNVAAGKMAADYAVKKL-GKKAKAFELSGVPGASATVDRG 187 Query: 169 KGFAEAIKNAPNI 181 KGF K+ +I Sbjct: 188 KGFHSVAKSKLDI 200 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 E QI+ V + G DAI I P +TG P +++A A IP+ + D +T Sbjct: 101 EEQIQLVEQAITDGADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGD---VLTW 157 Query: 126 VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR 185 + DN G +G L + + G VV ++GT G S + +R G+ +A KN P I+++ Sbjct: 158 IGVDNYTVGYELGTALCEALEGTG-KVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLD 216 Query: 186 SQSGDFTRSKGKEVMESFIK--AENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 SQ DF R KG VME+F++ E +G V + N DM +GAI+A K G Sbjct: 217 SQPADFNREKGMTVMENFLQRYPEIDG-----VGSINKDMTMGAIEACKAVG 263 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 112/237 (47%), Gaps = 14/237 (5%) Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 E+Q++ V + GVDAI I PV + G P L++A DA IPV + + + Sbjct: 101 SNEDQVRLVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVLVQGTQANTDKIYGWY 160 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 T AD E LI ++L ++++ K NVV + G A AID + P++ + Sbjct: 161 GTKYAD---EATLIAEYLAEKLDYK-GNVVYITGPQQAQNAIDEINATHAVFEKYPDLNL 216 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD-- 241 I Q G+F R+ VME+ I+ + +I V ND+ +GAI A++ AG K G + Sbjct: 217 IEEQPGNFNRATSMSVMENLIQKYSE-DDIDWVIGGNDECAMGAIAAMENAGWKLGFEDG 275 Query: 242 -ILTGSIDGVPDIYKAMMDGEANASVELTP---NMAGPAFDALEKYKKDGTM-PEKL 293 I ID D AM +G SV P G AF L Y DG + PE + Sbjct: 276 GIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAF--LVNYLNDGDLFPEYV 330 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 104/192 (54%), Gaps = 8/192 (4%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 K EA K+ +T+++ G+ Q + ++ Q V AI + P + G P + A A+I Sbjct: 57 KEEAAKQKLTVRLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADI 116 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 PVF D I K+ ++ ++ + +DN+ G+L G++ K +NG+ + Q + + I Sbjct: 117 PVFTAD--IRAKEGAV-VSHIASDNVAGGRLAGEYAAKRLNGRGQVAIIDQPYIQS--VI 171 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 +R +GF EA+K PNI+++ +GD R + + E ++++ + + V+A ND+ Sbjct: 172 ERVRGFEEALKPYPNIRVVARLTGDGVRDRSLKAAEDLLQSQ---RKLDAVFAVNDESAF 228 Query: 226 GAIQAIKEAGLK 237 G + AI+ AG K Sbjct: 229 GVVSAIEAAGRK 240 >UniRef50_C2FUL1 Putative uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FUL1_9SPHI Length = 198 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 9/181 (4%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 +T +D Q + QIK + SF+ Q +D + ++P A P++ IPV + DR Sbjct: 15 VTFLYSDAQGNSQQQIKQIESFLKQDIDLLIVSPNEADPLTPIVNSIYQHNIPVIVTDRK 74 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 +LY V ADN+ G L G ++ +NGK N+ + G G S +++R+KG E Sbjct: 75 ---TSSNLYNAYVGADNVAIGNLAGKYIGNILNGK-GNIALITGLKGTSASMEREKGLRE 130 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA-ENNGKNICMVYAHNDDMVIGAIQAIK 232 ++++ P IKI G + R K + + + I+ E N +++A ND M +G ++++ Sbjct: 131 SLRDFPRIKISTVLEGQWDREKAQAIARTHIEELERND----LIFAFNDQMALGLRESLQ 186 Query: 233 E 233 + Sbjct: 187 Q 187 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 +GQ E Q++ R+ V VDAI +A V +++ A +A++P+ ++R+ + Sbjct: 60 NGQDDVELQMRQFRNLVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNPEPATW 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 V +D + G L + L + N K NVV L G ++ R + + + P Sbjct: 120 PALTAFVGSDELESGTLQMEELARRANYK-GNVVILVGDPSNKSSVMRTEDVEKVVAKYP 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 ++K+++ + G++ RS+ ++ ++K G + ++ A+ND+M IGAI +++ G K G Sbjct: 179 DMKVVQKKIGNWERSQAATIVIEWVK---QGVDFSIIAANNDEMAIGAIMGLEKTGKKAG 235 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASV-ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 D L G IDG PD K M +G+ SV + A A DA + + T+ + Sbjct: 236 -DYLVGGIDGTPDGLKLMAEGKMAVSVFQDALGQANGAVDAAMRMARGETLASPVIWVPF 294 Query: 299 TLYLPDTAKE 308 L P+ ++ Sbjct: 295 KLITPENRQQ 304 >UniRef50_Q2RKM1 ABC transporter substrate-binding protein n=3 Tax=Bacteria RepID=Q2RKM1_MOOTA Length = 358 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 8/238 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L FS G ++ W A + + + G+ + DG + Q AV + D + Sbjct: 49 LKAAFSNAGLQATWCAQGKDTVERWGKWLGVDITWYDGALSVDKQRAAVEDMATKDWDFV 108 Query: 84 FIAPV-VATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I P+ + T EPV K+ + IPV +D I + + DN+ + + + L+ Sbjct: 109 AIQPLGIGTLNEPV-KKMLERGIPVIDMDTMIAQPGELPITCFIAPDNVWGAEQVTEALM 167 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 + + GK NVV QG++G + A R +GF IK P++K+I DF +K ++ E+ Sbjct: 168 QAIGGK-GNVVMTQGSLGHTGAQGRAQGFHNVIKRYPDVKVIDETPADFDVNKVAQIWEN 226 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 + N I Y HNDDM + A Q IK AG + K+I G DG+ +A+ G Sbjct: 227 LL---NRYDKIDAAYFHNDDMALAAYQVIKNAGRE--KEIKIGGNDGMQPAVEAVQKG 279 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 110/209 (52%), Gaps = 8/209 (3%) Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 +D Q Q+ V +F+++ VDAI + PV T ++ DA IP+ + +R+ D Sbjct: 77 FSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMVNDAGIPIIIANRTFDGV 136 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 D++ V +++I G L + + K +N + N+ + G +G I R +G + I+ Sbjct: 137 DQATAF--VGSESIQSGLLQMEEVAKLLNNE-GNIAIMDGELGHEAQIMRTEGNKQIIEE 193 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 ++++ + F RS+G +ME+++ N+G I V A+ND+M +GAI A++ G Sbjct: 194 HDGLEVVLQGTAKFDRSEGMRLMENWL---NSGTEIDAVVANNDEMALGAILALEAVG-- 248 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASV 266 D++ ID P +AM +G+ + +V Sbjct: 249 KLDDVIVAGIDATPAALEAMKEGKLDVTV 277 >UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Actinomycetales RepID=A6W806_KINRD Length = 362 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 16/227 (7%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 AE +GI L Q V +V GVDAI + PV A +P + AK A IP+ Sbjct: 76 AEAKGIELLWNSANLDVNTQASQVDQYVNAGVDAIIVVPVQADSLQPQVASAKAAGIPLL 135 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 ++ ++ D + V D++ G+ + + GK +V LQG +G S ++R Sbjct: 136 AVNAELNSTDIA---GNVQPDDVAAGEAQMQMMADAIGGK-GGIVVLQGPLGQSGELNRT 191 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 KG + P+I+++ + ++ R + ++++I A G I V A NDDM +GA+ Sbjct: 192 KGIENVLAKYPDIEVLAKDTANWKRDEAVNKVKNWISA--FGARITGVVAENDDMGLGAL 249 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE------ANASVELT 269 QA+KE+G+ + IDG+ D A+ GE N +VEL+ Sbjct: 250 QALKESGVT----LPVVGIDGIEDGLNAVKSGEFIGTMLQNGTVELS 292 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 14/234 (5%) Query: 48 EAEKRGITLKI--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 EA +GI + I A ++ + Q++ + + +++G AI IAP+ P + EA I Sbjct: 69 EAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAIVEANKKGI 128 Query: 106 PVFLLDRSIDV----KDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVG 160 V +D +D+ K + VT DN+ G ++++ ++ G ++E G G Sbjct: 129 YVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEGGEVAIIE--GKSG 186 Query: 161 ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 + R++G EA K K++ SQ D+ RSK +V + I+ N K I YA N Sbjct: 187 NASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVAANLIQKYPNLKAI---YACN 243 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 D M +GA+QA+ AG K G+ ++ G+ DG P+ ++ +G+ NA+V P M G Sbjct: 244 DTMALGAVQAVANAG-KTGQILVVGT-DGAPEARTSIDEGKLNATVAQDPAMIG 295 >UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B51147 Length = 354 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 132/302 (43%), Gaps = 15/302 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +T+GF+ ++ GW A AK A E + ++L +G QI + + + + VD Sbjct: 60 VTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQIETLINKKVDV 119 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + I P V +A ++ IPV LDR Y + DN G G ++ Sbjct: 120 LVILPADGKALTQVGLKAMESGIPVVNLDRVF--ASPQAYRCWIGGDNYGMGLNAGRYIG 177 Query: 143 KEVNGKP-CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +++ GK VVEL G + R GF +A+KN PNIK + Q+ +FT G+ M Sbjct: 178 EQLKGKKNAKVVELAGLDNLELTRQRTAGFDDALKNYPNIKKVGRQAAEFTVESGQSKMA 237 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 ++A + ++ H+DD +GA +AI++AG D L G A+ Sbjct: 238 QLLQAHS---GFDALWNHDDDQGVGAERAIQQAGR---DDFLMVGGAGAKRAMDAIKADN 291 Query: 262 A--NASVELTPNMAGPAFD---ALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNM 316 A+V P MA A D AL + G + E TLY KE +++ Sbjct: 292 TVLKATVLYPPTMAASAIDLARALGQGNGVGGLAELEIPASLTLYSAVVTKENVDEYLPT 351 Query: 317 GY 318 G+ Sbjct: 352 GF 353 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 10/198 (5%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + ++ A + QI + F+ +G D I ++P A PV+ +A D + V L+DR Sbjct: 15 VRVEFASAKDNNRVQIAQIERFIDKGADLIIVSPNEAKALTPVINKAFDRGVRVVLVDRK 74 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 DK Y + ADN+ G+ +G ++ + + GK V+ELQG G+S AI+R GF E Sbjct: 75 -SASDK--YTAFIGADNVAIGRAVGRFVGEHLGGK-GRVMELQGLRGSSPAIERDSGFRE 130 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 A+ + P IK++ + D+ K + K +V+A D M IGA QA ++ Sbjct: 131 ALAHYPQIKVVANAHADWFALKAETEATRMFKTVGEAD---LVFAQCDRMGIGAHQATQK 187 Query: 234 AGLKPGKDILTGSIDGVP 251 G+K K + +D +P Sbjct: 188 LGIKGVKIV---GVDALP 202 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 130/282 (46%), Gaps = 15/282 (5%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 VG+S + + A +V K ++ G+ ADGQ+ Q+ A+ +++G+ + + Sbjct: 54 VGYSGPSMVAPYYVALEDVVKRSVQRYGMQYYTADGQEDVAKQVAAIEDLLSKGIQVLVL 113 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 P+ PV+ A + VF++D ID +K+ Y ++V A+N L G+L+G WL E Sbjct: 114 NPLDPKAVVPVVNRAIAEGVVVFIVDSMID--EKAAYTSSVVANNTLNGELLGLWLA-ET 170 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAI------KNA-PNIKIIRSQSGDFTRSKGKE 198 + + + G G V +++ GF + +NA N I+ G + + G + Sbjct: 171 KNEALKIAIISGNQGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGGLK 230 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 ME + A + ++ A ND M +GA + IK+ G + IL DG + + + Sbjct: 231 AMEDILAAH---PYVNVLLAENDAMALGAYKIIKQMGKENQITIL--GFDGQKEAFDMLK 285 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 G+ A+ + +P + G L +G KL T S L Sbjct: 286 TGKFEATAQNSPKILGETIIELVARHLNGEKVNKLNYTPSVL 327 >UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZW4_MYCS2 Length = 372 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 130/275 (47%), Gaps = 13/275 (4%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 P+ + FS G + + +A+ ++ G + + Q +++ +AQG DA Sbjct: 91 PIKITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGTDA 150 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDKSLYMTTVTADNILEGKLIGDWL 141 + + P G + VLK+A+ A+IP F + + V+ S + + EG+ +G+W+ Sbjct: 151 LMMMPATTQGLDAVLKQAEAAQIPYFFSQKGMLGVEPASQVLAPYSN----EGQQLGEWV 206 Query: 142 VKEVNGKP-CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 V+ G+ V + G G + R F + + N ++ +Q G++ R ++ Sbjct: 207 VEHYKGQEDVKVAIISGIPGDQSSDARVNSFLLPLLRSCNFNVVANQPGNYRRGDSEKAA 266 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 ++ + A +I +++ ND+ +G I A+K +G + G D++ +DG D++ A+ G Sbjct: 267 QNMLAAN---PDIDLLFGANDEAALGGIAALKSSG-RQGVDVV--GLDGQTDMFAAIQSG 320 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 +A A+V P AG + Y + +PE L Sbjct: 321 QALATVIHKPT-AGIVVEEAVDYLRGKPVPEYRVL 354 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 125/277 (45%), Gaps = 13/277 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L +GF V + ++ + +AK + +GI L +AD ++ QI V SFV G D + Sbjct: 51 LKIGFC-VTNRDQFQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLL 109 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDR---SIDVKDKSLYMTTVTADNILE--GKLIG 138 I V A + ++ A D +P +R V D++ Y ++ + GK + Sbjct: 110 MINCVDAESIQEIINAAGD--VPCVFFNRMPSDHSVFDENHYYVGMSDYDCGYDMGKFMA 167 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSKGK 197 +WL + V G +GA+ + R G + + ++ + + + ++ RSK Sbjct: 168 EWLKDNNKTDTADGVLFLGPLGATNTVSRTDGIKKGLADSGYKVNWVFEDTAEWDRSKA- 226 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 M+ F + +GK + A+NDDM +G I+A+ AG D ID + A+ Sbjct: 227 --MDKFTQFMGSGKKFDFIAANNDDMALGCIEALTAAGYSAPFDFPIAGIDATENGLLAV 284 Query: 258 MDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKL 293 DG A+ + +P+ M F+ +D MPE++ Sbjct: 285 GDGTLTATFDQSPSKMTNYCFEIAFAILQDTDMPEEV 321 >UniRef50_D1BD03 Monosaccharide-binding protein n=9 Tax=Actinomycetales RepID=D1BD03_SANKS Length = 366 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 8/214 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + +GFS ++ GW A T AK+EAE + L++A+G QI + +F+ GVDA Sbjct: 72 VVIGFSAPAADHGWMGAITEAAKAEAENYPDVELRVAEGTNDVSLQISQIETFINDGVDA 131 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I + P + EA +A I V +DR + TV DN G G ++ Sbjct: 132 IVLLPFDGAALTEIATEAMEAGIVVINVDR--EFSSPFAARATVLGDNYGMGVSAGTYIC 189 Query: 143 KEVNGKPCNVV-ELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +++ P VV E+ G + DR +GFA+A++ + + + DFT G+ Sbjct: 190 EQLGDNPDAVVAEIAGIDSLPLTQDRSQGFADALEGC-GLDVDNRVAADFTIQGGESATA 248 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 + ++A I ++ H+DD +G + AI+ AG Sbjct: 249 NLLQA---APQIDAIWNHDDDQGVGVLAAIESAG 279 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 19/297 (6%) Query: 4 RLLIVSAVSAAMSSM--ALAA-PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLKI 58 +L + A+S A S A AA VG++ + + A N A EA K + + Sbjct: 6 KLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKN-AFIEASKSDPAVEVNF 64 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 +D Q+ + +F+AQ V+AI + PV G P +++A A IPV L ++ Sbjct: 65 SDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIAL----GIQS 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 T V + NI G+L G+++ KE K ++ L+GT G S +RKKGF +A+ + Sbjct: 121 AGGKYTFVGSKNIDAGRLQGEYM-KEHLPKGAKILYLEGTPGLSHTQERKKGFEDALGRS 179 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 ++ + S S ++ R++G +V E +I++ + A ND M +GA++A++ G Sbjct: 180 -DVTTLASLSANYDRAEGMKVTEDWIQSF---PKFDAIVAANDQMALGALEALQ--GADR 233 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASV-ELTPNMAGPAFDALEKYKKDGTMP-EKL 293 K ++ +DG D A+ G + ++ + A AF+ +E KK P EKL Sbjct: 234 LKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEKL 290 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 25/246 (10%) Query: 42 TNVAKSEAEKRG---ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 98 N + + EK G ITL A Q+KQ QIK V + VDAIF+ PV EP L Sbjct: 63 NNQIRMQVEKNGDQMITLDPALDQKKQNEQIK---QLVKRKVDAIFLNPVDWKAVEPGLV 119 Query: 99 EAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGT 158 AK A+IPV ++D + D L T+ +DN G L ++K+ + N+V L Sbjct: 120 AAKKAKIPVIVIDSQVYRSD--LVAMTIVSDNYKAGVLCAKEMMKQKD--QANIVLLTHN 175 Query: 159 VGASVAIDRKKGFAEAIKNAPNIKIIRS--QSGDFTRS--KGKEVMESFIKAENNGKNIC 214 S A+DR GF + IKN N KI+ S G R+ K +++E + +NI Sbjct: 176 AARS-AVDRINGFLDTIKNNKNYKILASADTQGQIERALPKVDKIIEEY-------QNID 227 Query: 215 MVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMA 273 +V ND +GA+ A+ G + G +L IDG P+ K + +G + +P MA Sbjct: 228 VVMGLNDPAAMGALAALDSKGAREG--VLVYGIDGSPEGKKLIKEGMMTGTAAQSPKQMA 285 Query: 274 GPAFDA 279 A +A Sbjct: 286 DTAVNA 291 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 7/213 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 LT+G + ++ + ++E + RG+ + D Q Q+ + + + +DA+ Sbjct: 29 LTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLITRQIDAL 88 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 P AT +K AK A IPV +DR+ + + +D++ K + +++ K Sbjct: 89 IYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTF---IASDSVAGAKALAEYVGK 145 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +GK + LQG +G + DR KGF E +K P +K++ Q ++ + KG V + Sbjct: 146 VTDGK-GRIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAVAQDL 204 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 ++ + NI + + D M +GA QA+K A L Sbjct: 205 LQRD---PNITVFFGRADAMALGAAQAVKVANL 234 >UniRef50_C0B6P5 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6P5_9FIRM Length = 220 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 24 LTVGFSQVGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +TVG SQ G ES W+ A T + + + G AD QE QI+ V F+ QGVD Sbjct: 47 ITVGISQSGEESSWKDANTASFMDTFVKSNGYEAVYADAGSDQEKQIEDVEGFIKQGVDY 106 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I + P+ GW+ VL++AK A IP+ L++ +D D SLY + +D + K G WL Sbjct: 107 IILNPISEIGWDDVLEDAKKAHIPIILVNNGVDTDDSSLYSCMLGSDYGKQMKKAGKWL 165 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 110/207 (53%), Gaps = 7/207 (3%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + L + DG+ Q + + Q D I P+ + +A +A IPV + Sbjct: 85 VKLTVFDGKYDALTQNNQFETMITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGR 144 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 ++ DK L + V +++++ G + +V + GK NVV L+G +G S ++R++G Sbjct: 145 VN-SDKLL--SYVGSNDVIAGAMQAQAVVDAMGGK-GNVVILEGPIGQSGQVERRQGNLS 200 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 + PN+K++ ++ +++R++ + E+++ A + GK I + ND+M +GAI+A+K Sbjct: 201 VLAKYPNVKVLEMKTANWSRAEALSLTENWLTA-HAGK-INGIIGQNDEMALGAIEAVKA 258 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDG 260 GL P K I T IDGV D +A+ G Sbjct: 259 KGLDP-KTIPTAGIDGVSDAVRAVKAG 284 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 132/263 (50%), Gaps = 15/263 (5%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPV 96 W A K +A++ G + D Q E QI ++S V +GVDAI +AP+ P Sbjct: 55 WEACWYGFEK-QAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPA 113 Query: 97 LKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQ 156 L +A +PVF +DR + + ++T+ DN+ G+ + + LVK+ G+ +V+ +Q Sbjct: 114 LTTVNEAGVPVFCVDR----RGEGEVVSTLETDNVKAGEAMAEQLVKDY-GEDVDVLIIQ 168 Query: 157 GTVGASVAIDRKKGFAEAIKNAPNIKIIRSQS-GDFTRSKGKEVMESFIKAENNGKNICM 215 G + + +DR +G ++ NI I+ S G+++ ++F+ E N ++ + Sbjct: 169 GVLSDTPTLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFL--ETN-PDLDV 225 Query: 216 VYAHNDDMVIGAIQAIKEAGL--KPGKDILTG--SIDGVPDIYKAMMDGEANASVELTPN 271 ++ D +V G + A+KEAG K G++ G S+DG ++ K + DG + + P Sbjct: 226 IFTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPI 285 Query: 272 MAG-PAFDALEKYKKDGTMPEKL 293 G +++ Y G + EK+ Sbjct: 286 QFGIDTVKSMKTYLDGGKVEEKV 308 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 131/279 (46%), Gaps = 22/279 (7%) Query: 26 VGFSQVGSESGWRA-AETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +GFSQ + +RA + + + L IADGQ Q+ V +F+ Q VD +F Sbjct: 52 IGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFLTQQVDILF 111 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN---ILEGKLIGDWL 141 ++ A P + D IPV LDR + + + V+ DN E L L Sbjct: 112 VSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEK---FTSFVSGDNRAIAHEAGLYAASL 168 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + + +V L+G +S AI+R +GF I P +KII Q D+ + K EV Sbjct: 169 LPDGG----DVAILEGLPSSSPAIERLEGFKAGISTNPKVKIIAVQPVDWMQDKAVEVFS 224 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI---YKAMM 258 + ++A +I +VY ND GA A+K+AG K G+ + G+ DG+P +A+ Sbjct: 225 AMLQAH---PDIKLVYTSNDLAAAGAYIAVKQAG-KLGQVKIIGT-DGLPGPSGGIRAVA 279 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKD--GTMPEKLTL 295 +G+ A+ + P A A D +K D ++P +T+ Sbjct: 280 EGQWTATY-VYPTGAAEALDLAKKILIDCASSVPRLVTV 317 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 17/317 (5%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETN-VAKSEAEKRGITLKIADG 61 K+ +I +A+S + + A A TVG S + + N + E +G+TL++ D Sbjct: 2 KKFIIGAAMSVLLGTAAHAE--TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVEDA 59 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDKS 120 Q Q +++F+A VDAI + PV + K A DA+IP+ ++R ++V Sbjct: 60 QNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSLP 119 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN--A 178 V +D + G L + + + GK N V + G + A R + + +K Sbjct: 120 DGQAFVASDETVAGTLEAKEVCRLLGGKG-NAVIMMGELSNQAARMRTQSAKDVLKTDEC 178 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 I ++ Q+ ++ R++G +++ +++ ++G V A+ND+M IGAIQA+K AG K Sbjct: 179 KGISVVEEQTANWQRTQGSDLVTNWL---SSGIEFNAVIANNDEMAIGAIQALKAAG-KD 234 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP---AFDALEKYKKDGTMPEKLTL 295 K + +D D AM G+ + +V + AG A DA K K G EK Sbjct: 235 MKSYVVAGVDATQDALAAMQAGDLDVTV--FQDAAGQGKGALDAALKLVK-GDKIEKKVY 291 Query: 296 TKSTLYLPDTAKEELEK 312 L P+ K+ + K Sbjct: 292 IPFQLVTPENVKDYVAK 308 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 9/213 (4%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + L I D + + + Q + SFVAQGVDA+ I+PV A +K DA IPV Sbjct: 77 VKLIINDAESQSDKQASQLDSFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSAD 136 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 + ++ V + N G++ ++ +++ GK + L+G +GA R G+ Sbjct: 137 VTGDQGQVW---VGSSNENGGEIEMKYVAEKLGGKG-KIAVLRGPLGAFAEQGRFAGYET 192 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 +K+ P+I+I+ Q+G++ R + ++E+ + A G + + ND M +GA++A+K Sbjct: 193 VLKDYPDIEIVFDQTGNWQREEAMALIENLLTA---GTELDAIVCQNDGMALGALEAVKA 249 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 AG K + +TG ID + D ++ GE +A+ Sbjct: 250 AG-KKDQITITG-IDAIVDALDSIKAGELDATC 280 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 11/223 (4%) Query: 46 KSEAEKRG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 K AEK G I L+ D ++ Q+ V +FV QG D I + PV + +P+ A Sbjct: 61 KKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNG 120 Query: 105 IPVFLLDRSI-DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 + ++R+ ++ D + Y V ++ G + ++L +++ GK N+V L G + Sbjct: 121 TKIVYVNRNPGNLPDGAYY---VGSEEKKAGIMQMEYLAEKMGGK-GNIVILMGKLDNEG 176 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 I R +G E K P+IKI+ Q+G + R+ G E+++ G I + ++NDDM Sbjct: 177 TIKRTEGVEEIAKKYPDIKILDKQTGLWQRTDGMAKTENWLNKY--GNEINAIVSNNDDM 234 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 +GA+QA+K++G K G I +D PD A+ G+ +A+V Sbjct: 235 ALGAVQALKDSG-KTG--IFVIGVDATPDGLAALAAGDISATV 274 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 20/281 (7%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQKQE--NQIKAVRSFVAQGVDAIFIAPVVATGWE 94 WR+ E AK E+ G+ + +++ E Q+ V + + + V A+ IA + Sbjct: 52 WRSVEAG-AKKAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALA 110 Query: 95 PVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVE 154 V K+A DA+IPV D ++ S ++ T DN + G + G+ L K +NGK V Sbjct: 111 VVAKKAMDAKIPVVTFDSNVKGDITSSFIAT---DNKVAGAMAGEQLAKLINGK-GKVAI 166 Query: 155 LQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNIC 214 + G + AI+R+ GF EA+ P+IKI+ +Q D +SK + I N +I Sbjct: 167 VSHNPGTTTAIEREAGFREALAKYPDIKILNTQFSDGDKSKALAITLDII---NANPDIA 223 Query: 215 MVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMA 273 +Y N+ + G + ++E GL GK +L G ID D+ K + G + V P NM Sbjct: 224 GIYGTNEPSIFGIAKGVEEKGL-TGKVVLVG-IDSSEDLAKFLEKGVISGLVIQDPYNMG 281 Query: 274 GPAFDALEKYKKDGTMPEK------LTLTKSTLYLPDTAKE 308 L K K G EK + +TK + PD K+ Sbjct: 282 YQTVQQLYKLSK-GEKVEKRIDTGAILVTKENINNPDITKK 321 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 142/290 (48%), Gaps = 14/290 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 +L + S+++ + ++A A + + G+ + + A+ A+ +A + G+ + + Q Sbjct: 5 KLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVLSPPQ 64 Query: 64 KQ--ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 + ++QI V + +GV AI IA V++ A+ A IPV ID K + Sbjct: 65 ESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVF----IDTKGINK 120 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 +T + DN K+ D++ V+ + +V LQG + S R G +K + Sbjct: 121 GVTFIGTDNKAGAKMAADFICDRVS-RGSDVAILQGIITQSTGKARADGAHAGLKGC-GL 178 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 I+ Q ++ R++G+ VME+ + + + V+A ND+M +GA++A+K+A + D Sbjct: 179 NIVAEQPANWDRAQGRTVMENIL---TRNQKLKAVFASNDNMALGAVEALKDADML--ND 233 Query: 242 ILTGSIDGVPDIYKAMMDGEANASV-ELTPNMAGPAFDALEKYKKDGTMP 290 ++ D PD K+++ GE A++ + + NM + + K ++P Sbjct: 234 VIVVGFDANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSLP 283 >UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMJ9_9PROT Length = 307 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 16/267 (5%) Query: 6 LIVSAVSAAMSSMALAAPL------TVGFSQVGSESGWRAAETN-VAKSEAEKRGITLKI 58 + + VS ++S+ A L T+ F+Q + +R + V K+ + I Sbjct: 4 IFIFIVSILLASILNAGELDKSKTYTIAFAQDTLNNDYRLKQVKEVEKALLKYPNIRFIY 63 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 +D + Q+K + F++QGVD + +P V+ +A + IPV L+ R + D Sbjct: 64 SDAKASASMQVKQIEDFISQGVDLLMTSPYDEDSTRQVISKAYKSNIPVVLVSRRVKGND 123 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + + + +N K +LVK++N K V+ L+G +V R +GF E + Sbjct: 124 ---FTSYIHPENRQIAKDAAKYLVKKMNYKGT-VLLLKGVAKTNVERMRTEGFFEVVNKY 179 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 PNIK+I + R EV + + A G+ V + +D M++G K+ G+KP Sbjct: 180 PNIKVIERTANYLRRDAIIEV-DKLLSA---GQKFDAVMSQSDSMLVGVRMVFKKYGIKP 235 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANAS 265 ++T ID + A+ DGE N+S Sbjct: 236 S-SLVTVGIDYIKPAQDAIRDGEQNSS 261 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 10/238 (4%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQK--QENQIKAVRSFVAQGVDAIFIAPVVATGWE 94 W + ++ A+ A+ G+ L IA Q++ E Q+ + + + + DAI ++ + G Sbjct: 62 WWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGVI 121 Query: 95 PVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVE 154 P +K+A++A I + D I D S+ V D++ G ++ +++ G+ V Sbjct: 122 PAIKKAREAGIKIVNFDTRI--SDTSVIDAFVGGDDVAGAYKAGKYICEQLGGEG-EVAI 178 Query: 155 LQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNIC 214 + G + S +DR GF +A P IK++ Q +++ K +V + + A N K I Sbjct: 179 ITGLMEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILTANPNVKAI- 237 Query: 215 MVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNM 272 +A ND M +G + A K AG K IL G DG+ D MDG+ +A V L PN+ Sbjct: 238 --FACNDQMAVGMVNAAKAAGKKADDLILVG-YDGILDAVNMTMDGDLDAFVSL-PNL 291 >UniRef50_C5C2C6 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Actinomycetales RepID=C5C2C6_BEUC1 Length = 360 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 8/214 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + +GFS ++ GW AA T A+ A E I L++A+G QI V F+ GVDA Sbjct: 66 VVIGFSAPAADHGWMAAITERAQEYADEHSDIDLQVAEGTNDVNLQISQVEQFINDGVDA 125 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I + P V EA +A I V +DR + D + TV DN G G ++ Sbjct: 126 IVLLPFDGAALTEVALEAMEAGIVVVNVDREFN--DPNAARVTVLGDNYGMGVSAGQYIC 183 Query: 143 KEVNGKPCNVV-ELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +++ P +V E+ G + DR +GF +A+ + + + DFT G E Sbjct: 184 EQLGDNPDAIVAEIAGIDSLPLTQDRSQGFEDALGEC-GLDVDNRVAADFTIQGGTAATE 242 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 + A I ++ H+DD +G + AI+ AG Sbjct: 243 QLLAA---APQIDAIWNHDDDQGVGVLAAIETAG 273 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 13/173 (7%) Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL---YMT 124 Q+ + + + AI PV P +++ DA+IPV ++V D+S ++ Sbjct: 71 QLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPV------VNVTDRSAGGKFLA 124 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 V AD+ G G +L+KE+ GK NVV L+G G+ +DR +GF +A+K ++K++ Sbjct: 125 FVGADDYSLGLETGRYLLKEMGGK-GNVVILEGVKGSLTNVDRVRGFNDALKEFKDVKLL 183 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 SQ ++ R +G +VME+ +++ I V A ND M IGAI+A+ A K Sbjct: 184 ASQPANYQRLQGLQVMENLMQSH---PQIDGVLAANDAMAIGAIEALDGANRK 233 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 17/253 (6%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQ--ENQIKAVRSFVAQGVDA 82 T+GF + + + N AK EAE +G+ +++ G Q + Q+ + + +A VD Sbjct: 73 TIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLGIIENMIANKVDG 132 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT----ADNILEG-KLI 137 I + P + G E L + K+A IP+ LD + D+SL + N EG KL Sbjct: 133 ILLVPSSSDGLESALTKCKEAGIPIINLDTKL--TDESLANVGLDIPFYGTNNYEGAKLA 190 Query: 138 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 G+++ K K L+G G + A DR GF E + + ++ Q+ ++ +G Sbjct: 191 GEYVAKNFE-KGTKTAILKGIEGQTNAADRYNGFIEGAGDT--VTVVAEQTANWEVDQGY 247 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 ++ I A ++ + + ND+M IGA++AIKEA ++ I+ D V + + Sbjct: 248 TAAQNIISAN---PDVELFFCCNDNMGIGALRAIKEANMQEQIQII--GFDAVSEALNLV 302 Query: 258 MDGEANASVELTP 270 +GE A+V P Sbjct: 303 ENGEFLATVAQYP 315 >UniRef50_A6WEF2 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Actinomycetales RepID=A6WEF2_KINRD Length = 351 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 8/214 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + +GFS S+ GW A T+ A EAE+ + L++++G QI V F+ GVDA Sbjct: 57 VVIGFSAPASDHGWMGAITSAATKEAERYDDVELRVSEGTNDVNLQISQVEQFINDGVDA 116 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I + P V A +A I V +DR + + TTV DN G G ++ Sbjct: 117 IVLLPYDGAALTEVATRAMEAGITVVNVDR--EFSSPAAARTTVLGDNYGMGVSAGTYVC 174 Query: 143 KEVNGKPCNVV-ELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 ++V P VV E+ G + DR +GFA+A+ + + + DFT G++ Sbjct: 175 EQVGDTPGAVVAEIAGIDSLPLTQDRSQGFADALGEC-GLDVDNRVAADFTVQGGQQAAA 233 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 + ++A I ++ H+DD +G + AI+EAG Sbjct: 234 NLLQAA---PKIDALWNHDDDQGVGVMAAIEEAG 264 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 8/217 (3%) Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 G+ L+I D Q +++F+A GVDAI + PV + K A DA IP+ ++R Sbjct: 51 GVDLQIEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNR 110 Query: 113 S-IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGF 171 +++ V ++ + G L + K ++GK VV + G + A R K Sbjct: 111 EPVNIDTLPEKQAFVASNEVDSGTLQTREICKLLDGKGKAVV-IMGELSNQAARMRTKDI 169 Query: 172 AE--AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 + A I+I++ Q+ ++ R++G ++M +++ A G V A+ND+M IGAIQ Sbjct: 170 HDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA---GIEFDAVIANNDEMAIGAIQ 226 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 A+K AG + ++ G ID D AM GE + SV Sbjct: 227 ALKAAG-RSMDSVVIGGIDATDDALAAMAAGELDVSV 262 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 116/222 (52%), Gaps = 13/222 (5%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + +K A G+ ++ Q+ V + + A+ ++P+ P +++AK IPV ++ Sbjct: 108 LDMKSAQGEGDEQGQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDG 167 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 I +K+ ++ V I+ G+L +W+ K++ G+ V + G A A R GF Sbjct: 168 I-IKNADIF---VGPKAIMNGELAAEWISKKIGGE-GEVAIVIGMPKAFAARQRTLGFEN 222 Query: 174 AIK-NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 +K NA +KI+ Q+ D+ R+K K++ E +IK N+ ++ +ND M +G +A+ Sbjct: 223 WMKSNAAGVKIVEKQNADWDRAKAKDLAEIWIKKY---PNLKAIFCNNDVMALGVQEAVN 279 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 + +DIL +DG+ + Y+++ GE +A+V+ P G Sbjct: 280 AS----KRDILVVGVDGIKEAYESIRKGEMDATVDSFPLYKG 317 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 22/284 (7%) Query: 4 RLLIVS-AVSAAMS--SMALAAPLTVG-FSQVGSESGWRAAETNVAKSEAEKRG---ITL 56 RLL S AV AA++ ++ A LT+ + + W A E + +A ++G + L Sbjct: 2 RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGI--RDAAQKGNVNLIL 59 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID- 115 + + E Q+ A + + + A+ +A + + P LK+A IP+ LD ++D Sbjct: 60 QAVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDP 119 Query: 116 ---VKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGF 171 ++ ++++DN G +++V ++ G V+ ++G G R+ GF Sbjct: 120 AVLQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGF 179 Query: 172 AEAIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 E +K APN +I+ + GD+ R K + ++ ++ +Y ND M +GA++A Sbjct: 180 TERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRH---PDLAAIYCANDTMALGAVEA 236 Query: 231 IKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 + AG K +L DG D K++ G NASV P + G Sbjct: 237 VFAAG----KKVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVG 276 >UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_BACFN Length = 917 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 23/232 (9%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +GFSQ S+S WR A + EA R + L + + Q+ +R ++Q VD + Sbjct: 36 IGFSQCTSDS-WREAVLLEMQIEASNYRNVELVVYNAMDNSSRQVSQIRKLISQNVDVLI 94 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 I+P A V EA IP + DR I + Y ++ A+N G IG++ Sbjct: 95 ISPNEAVPITDVAVEAYRKGIPTIIHDRKIQSDE---YTVSIGANNYNIGSAIGEY---- 147 Query: 145 VNGK-PCN--VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +NG+ P N ++E+ G G+S A++R GF + +++ N ++ T+ GK Sbjct: 148 INGQLPPNSKILEIWGLEGSSPAMERHDGFIDHLRSDKNFQV--------TQVFGKWHYN 199 Query: 202 SFIKAEN---NGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 S A N +I +VYAHND M + A I + GK I IDGV Sbjct: 200 SAYDAVNRLATFADIDLVYAHNDVMALAARDVIMKRDSVSGKRIRFIGIDGV 251 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 15/244 (6%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G SQ + WR A N + EA + + I D Q E QI+ +R + Q VD + Sbjct: 29 IGLSQCMLDDAWRQAMINDMRIEASNYDDVEIIIKDAQNNNETQIQQIRDLIRQKVDVLI 88 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 I+P + V +EA A IP + DR ++ Y + V A+N G G++ Sbjct: 89 ISPYQSEPITAVAEEAYRAGIPTIITDRKVNTDQ---YTSFVGANNYEIGLAAGNY---A 142 Query: 145 VNGKPCN--VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 N P N ++E+ G S A +R KGF +A++ ++ R G + + ME Sbjct: 143 ANYLPPNAIILEIWGLTQTSPAQERHKGFVDALREREDLS-FRKIEGQWLVDTAR--ME- 198 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI-YKAMMDGE 261 ++ + + I VYAHND M I A + G+++ +D V +A+ DG Sbjct: 199 -LRKLEHPEQIDFVYAHNDMMAIAAREYFMAWDSIRGRELRIIGVDAVAGAGLEAVEDGR 257 Query: 262 ANAS 265 NAS Sbjct: 258 INAS 261 >UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1U2_CLOB8 Length = 315 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 14/229 (6%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG---ITLKIADGQ 62 LI+ A+ ++ +G SQ WR + + E +K I K A G Sbjct: 20 LIIFAIYLYRTNSQKKDTFIIGMSQANLYEPWRISMNKEIQEEVKKHSNIKIIFKDAGGD 79 Query: 63 -QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 +KQ I+ + +F G D + ++ + P +++A ++ +PV LLDR++D D +L Sbjct: 80 VEKQREDIEDLMNF---GADLLIVSINNSKELTPTVRKAYES-LPVILLDRAVDGYDYTL 135 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 Y + AD G G+ + NV+E+QG + +S + GF EAI N NI Sbjct: 136 Y---IGADTRSIGVQAGELIANLAGNNKANVIEVQGILDSSTDKEITDGFKEAISNYKNI 192 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 I R+ G++ +++ ++ +E +K + K++ +++AH+D M +GA A Sbjct: 193 AIDRTIVGNWQKNETEDKLEEILKDD---KDVNIIFAHSDYMALGAYYA 238 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 120/255 (47%), Gaps = 17/255 (6%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 +S E G L D + Q++ + F+ V AIFI PV +P L AK+A I Sbjct: 66 RSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKVKAIFINPVDWKQIKPALIAAKNAGI 125 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 PV ++D V D L TV +DN G +L+K + N++ ++ + S I Sbjct: 126 PVIVVDTP--VYDDKLVACTVISDNYDAGVQCAKYLMK--SKSKANIMLIEHSKAKS-GI 180 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 DR KGF + I + KI+ + + K +++ IK N+ + A ND + Sbjct: 181 DRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDLIKKHT---NVDAIMALNDPSAL 237 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-----AFDAL 280 GA+ A+KE GL GK ++ G +DG P+ + DG A+ PN G A+D L Sbjct: 238 GALAALKENGL-LGKVMVFG-VDGSPEAKTMIHDGFMTATSAQFPNKIGHIAAEKAYDIL 295 Query: 281 --EKYKKDGTMPEKL 293 ++ K+D +P L Sbjct: 296 KGKRLKRDVIVPISL 310 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 125/266 (46%), Gaps = 14/266 (5%) Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 E K I + D +Q QI V + + G AI V A EP+++ K+A +P+ Sbjct: 93 EEHKDKIHITYLDSKQDANTQISQVENQILNGTQAIICLAVDAKQSEPIVRACKEAGVPL 152 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 +R + D + V AD + G L+ + ++ GK NV + G +G R Sbjct: 153 IAFNRIFENCD-----SFVGADGAVAGSLLARFTGEKTGGKG-NVAIVNGIMGQENQFIR 206 Query: 168 KKGFAEAIKNA-PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 + E + P+++++ +GD+ R K +++E+++++ G +I + NDDM +G Sbjct: 207 RDAIVETLGEMYPDMQVVIEGAGDWKRDKALQLVETWLQS---GTDIDAILCLNDDMAMG 263 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPN-MAGPAFDALEKYKK 285 A+++AG DI+ ++G PD A+ DG+ A+V P+ A A +A +Y Sbjct: 264 TQLAVEQAG--KSDDIIVCGVNGDPDGINAVRDGKIAATVFQNPDRQAEEALEAALQYIH 321 Query: 286 DGTMPEKLTLTKSTLYLPDTAKEELE 311 G PE + L D + ++ Sbjct: 322 -GEKPESKIMIPFELVTADNVDDYVQ 346 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 11/251 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 S ALA +T+G S + + + + A+ G+ L ++ Q QI V F Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + +GVDAI ++PV + G + +AK A IPV +D S + + ++ T DN G+ Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVAT---DNYYGGR 137 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + G+ + K +NGK V + V SV DR GF EA+ P I+I+ Q G TR + Sbjct: 138 IAGETMAKVLNGK-GQVAIIDYPVVQSVR-DRVAGFKEAVSKYPGIEIVAIQPG-ITRPE 194 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++ ++A + ++ DD + ++ A+K AG++ D+ DG+ + Sbjct: 195 ALNTAQNILQAH---PEVDGIFGFGDDAALASVVAVKSAGME--DDVKVIGFDGMEEARN 249 Query: 256 AMMDGEANASV 266 A+ E+ +V Sbjct: 250 AVKKEESFVAV 260 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 141/317 (44%), Gaps = 35/317 (11%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPL----------TVGFSQVGSESGWRAAETNVAKSEAE 50 +W RLL+ A S A + +A +P VG S + + A++ A Sbjct: 3 LWPRLLM--AASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAA 60 Query: 51 KRGITLKIADGQQKQEN--QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 + G+ L+ G+ + Q+ AV S +A G I I P + PVL++A+ I V Sbjct: 61 RLGLELRSFAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVI 120 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV--NGKPCNVVELQGTVGA-SVAI 165 LD +D + T DN+L GKL+G+W K + N K V L V SV + Sbjct: 121 ALDTPLDPPGAA--DATFATDNVLAGKLVGEWAAKTLGANAKSAKVALLDLNVNQISVDV 178 Query: 166 DRKKGFAEAIK-NAPNIKII------RSQSGDFT---RSKGKEVMESFIKAENNGKNICM 215 DR +GF + N + +I R D T G+ ME+ ++ + + + Sbjct: 179 DRDQGFLKGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRD---PYVSV 235 Query: 216 VYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAG 274 VYA N+ GA +A++ G KD+L ++DG + + DG A+ P MA Sbjct: 236 VYAINEPAAAGAYEALRSIGRD--KDVLVVAVDGGCPGVRNVKDGVIAATAMQFPLAMAQ 293 Query: 275 PAFDALEKYKKDGTMPE 291 +A+ KY DGT P+ Sbjct: 294 MGVEAVLKYATDGTKPK 310 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 18/298 (6%) Query: 4 RLLIV-SAVSAAMS--SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 RLL V + + A+MS S A AA T Q+ ++ + A+ A+ G L I + Sbjct: 10 RLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFN 69 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q A+ +++ QGV I +A + G P +KEA A IPV +D + ++ Sbjct: 70 SNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQA 129 Query: 121 LYMTTVTADNILEGKLIGDWLV----KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 V DNI G++IG + V KE+ G+ + + G + +++ R+KGF E +K Sbjct: 130 ---AQVGVDNIEGGRIIGQYFVDYVQKEMGGQAR--LGIVGALNSAIQNQRQKGFEETLK 184 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + P I I G + K E+ I ++ +YA + ++GAI A++ G Sbjct: 185 SNPKITIANVVDGQNVQDKAMTAAENLITGN---PDLTAIYATGEPALLGAIAAVENQGR 241 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKL 293 + KDI D M G A ++ P M A +AL T+P+ + Sbjct: 242 Q--KDIKVFGWDLTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTI 297 >UniRef50_UPI000169B225 ABC transporter, periplasmic ribose/sugar binding protein n=1 Tax=Yersinia pestis FV-1 RepID=UPI000169B225 Length = 62 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/62 (66%), Positives = 46/62 (74%) Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNM 316 M GEANA+VELTPNMAGPA DAL KKDGT P K T+S L PDTAK+E E KK++ Sbjct: 1 MSSGEANATVELTPNMAGPALDALIVLKKDGTQPPKFIQTESRLLQPDTAKQEYELKKSL 60 Query: 317 GY 318 GY Sbjct: 61 GY 62 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 +G S + + AA+ AK+ ++ G + D Q K + QI V V +GV + I Sbjct: 38 IGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLLII 97 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 P + G + A + V ++D +++ ++ ++T V + N + G L+G W+++EV Sbjct: 98 NPADSEGLVNAVNNASANGVKVVVIDSTLN--PRANFVTQVQSSNSINGALVGHWVIEEV 155 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-------PNIKIIRSQSGDFTRSKGKE 198 K + L G G V +R+ G I A ++ ++ G + G + Sbjct: 156 GNKSLKIALLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDEGGLK 215 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 ME + A K+I MV ND MV+GA +AI+ AG Sbjct: 216 AMEDLLVAN---KDINMVLGENDSMVLGARRAIESAG 249 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 11/219 (5%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP-V 107 A++ + L D ++ Q+ +++F+ Q VD I + PV +P+ + A I V Sbjct: 99 AKQDNLELIFVDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELV 158 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 +L R + D Y V ++ + G+ + +G N+ + G + AI R Sbjct: 159 YLNRRPTYLPDGVAY---VGSEELRFGEEQAKYAASHSDG--GNIGIIMGMMTVEAAILR 213 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 +G + K P IIR Q+ + RS+G VME++I N+G + ++ ++NDDM +GA Sbjct: 214 TQGVEDFFKEKPEYNIIRKQTALWQRSQGMVVMENWI---NSGDKLDIIISNNDDMALGA 270 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 IQA++ AG K I+ G +D PD A+ +G +A+V Sbjct: 271 IQALRAAG-KLDDTIVIG-VDATPDGLMAIKNGALDATV 307 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 127/268 (47%), Gaps = 25/268 (9%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 T+G S + S + + + +A++ G TL + D Q+ V+ F+ + VDAI Sbjct: 60 TIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKVDAIV 119 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 IAP + G + +++ A+ A IPVF +D + D K +T V DN G+L +++V Sbjct: 120 IAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP----VTHVATDNKKGGQLAAEYVVNN 175 Query: 145 VNGKPCNVVELQGTVGA------SVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGK 197 + + E +G V +DR+ GF + +K NAP+IK++ Q+ + K Sbjct: 176 I------LTEKKGNVAVITYSEIESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAA 229 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 +VM++ + + NI +V+ D IGA+ +I A G+ +GV +I K Sbjct: 230 DVMQNMLLKND---NIDVVFCVGDPAAIGALSSITAANAATKIIGYDGNPEGVAEIKKG- 285 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKK 285 N ++ + AG LE KK Sbjct: 286 ----GNWVADVAQDPAGIGKTTLEAIKK 309 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 12/205 (5%) Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID---VKDKSLYM 123 +QI+ V + VDAI +AP + PV+K+A DA I V +D +D +K K L + Sbjct: 83 SQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNV 142 Query: 124 TTVTADNILEGKLIGDWLVKEVN-GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 V DN +++GD+L K + G +VE G + A R GF +A+K A K Sbjct: 143 PFVGPDNRKGARMVGDYLAKRLKAGDAVGIVE--GVPTTTNAQQRTAGFQDAMK-AAGAK 199 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 ++ QSG++ KG V + + N N+ + ND+M IGA+ A++ AG + GK Sbjct: 200 VVSVQSGEWEIDKGNAVAAAML---NEYPNLKALLCGNDNMAIGAVSAVRAAG-RQGKVY 255 Query: 243 LTGSIDGVPDIYKAMMDGEANASVE 267 + G D + I + DG A+ + Sbjct: 256 VVG-YDNINAIKPMLKDGRVLATAD 279 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 16/241 (6%) Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 I D Q Q+ V+ F+ Q VDAI +AP + G P + AK A IPVF +ID+K Sbjct: 88 IMDASQDSNKQLAQVQDFITQKVDAIVLAPTASAGIAPAVDLAKKAGIPVF----TIDIK 143 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + + V DN GKL + ++V NGK + V + V DR+KGF +A+ Sbjct: 144 AEGDVKSHVATDNYAGGKLAAKYAAEKVLNGKGKVAIITYSEVQSCV--DREKGFKDALA 201 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 PNIK++ ++ + K + + + ++ +++A D +GA+ IK A Sbjct: 202 EYPNIKVVDVENCSGSAEKAANLTQDILL---KFPDLDLIFAVGDPFAVGAVSTIKAA-- 256 Query: 237 KPGKDILTGSIDGVPDIYKAMMD-GEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLT 294 G+++ DG P+ + + + G A V P+ + G D + Y ++P ++ Sbjct: 257 --GRNVKVIGFDGNPEAIQEIKNHGLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQVL 314 Query: 295 L 295 + Sbjct: 315 I 315 >UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7J1_ABIDE Length = 360 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 24/278 (8%) Query: 48 EAEKRGITLKIADGQQKQ--ENQIKAVRSFVAQG-VDAIFIAPVVATGWEPVLKEAKDAE 104 EA K G+ + + G + E Q++ + +FV+ G AI +AP+ + E Sbjct: 93 EAAKLGVKVDVQSGNTEDDVEGQVQVLENFVSTGEYKAIGVAPISDVNLNNAIAEGCSKG 152 Query: 105 IPVFLLDRSIDVK-----DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTV 159 I +D ID K LY T DN G+ L+K+V G V ++G Sbjct: 153 IVFIDIDEKIDAKALGELGGGLYAYVAT-DNKEVGETGAGELLKQV-GNNAEVAIIEGKA 210 Query: 160 GASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAH 219 GA ++ ++++ A+A A K++ SQ D+ R+K +V + I A N K I Y Sbjct: 211 GA-LSGEQRRDGAKAAFEAAGAKLVDSQPADWDRTKAMDVATNMISANPNLKAI---YCC 266 Query: 220 NDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFD 278 ND M +GA++A+K K GKDI DG D KA+ DGE A+V P + G A + Sbjct: 267 NDTMAMGAVEAVK----KSGKDIKVCGTDGNDDAIKAVADGELAATVAQNPKLVGATALN 322 Query: 279 ALEKYKKDGTMPE---KLTLT--KSTLYLPDTAKEELE 311 + K K+ PE ++T T + L D AKE L+ Sbjct: 323 LMVKAVKENAKPEAGAEVTQTGIAAVLITKDNAKEYLK 360 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 12/229 (5%) Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA K G+ +++ D Q QI +++ QG + +AP + + + + V Sbjct: 62 EAAKLGVKVQVLDAQNNSSKQISDLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAV 121 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 +DR+I + V ADN+ G+ + DW+VK VV + G+S +I+R Sbjct: 122 ISVDRNI--AGGKTAVPHVGADNVAGGRAMADWVVKTYPAG-ARVVVITNDPGSSSSIER 178 Query: 168 KKGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKN---ICMVYAHNDDM 223 KG + + P KI+ Q+ + R + V ++ + + + +C+ NDDM Sbjct: 179 VKGVHDGLAAGGPAFKIVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCL----NDDM 234 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNM 272 +GA++A++ AGL K + G D +P+ + GE A+VE P + Sbjct: 235 AMGALEAVRAAGLDSAKVKVIG-FDAIPEALARIKAGEMVATVEQNPGL 282 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 31/251 (12%) Query: 37 WRAAETNVAKSEAEKRGITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWE 94 +R + K EK G T K I DG+Q Q NQ + + +F+AQG D I V T Sbjct: 54 YREELASYFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAG 113 Query: 95 PVLKEAKDAEIPVFLLDRSIDVKDKSLY---MTTVTAD----NILEGKLI---------- 137 ++ AK EIPV ++R + ++ ++ T V AD ++G +I Sbjct: 114 SIINSAKAKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQGYMIANLENKGDID 173 Query: 138 GDWLVKEVN--GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 GD V + G P NV Q T SV KG E K + + ++ +K Sbjct: 174 GDGSVSYITLMGDPANVDAKQRTE-YSV-----KGLEE--KGVKTNALAQPYQANWDTAK 225 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G+E + + E G + +V+A+ND M +GA+ AI+ AG K G+DI +D +PD + Sbjct: 226 GQEFTANAL--EQFGNKLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIE 283 Query: 256 AMMDGEANASV 266 + G+ +V Sbjct: 284 LLKGGKLTGTV 294 >UniRef50_Q89KM1 ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89KM1_BRAJA Length = 352 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 9/246 (3%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 PL FS G ++ W A A+ + + + DGQ Q A+ + +Q D Sbjct: 59 PLKAAFSNAGLQATWCAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDF 118 Query: 83 IFIAPV-VATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + I + T +PV K DA PV +D I D+ + + DN G + L Sbjct: 119 VAIQAFGIGTLTQPVQKMI-DAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQAL 177 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + GK ++ QG +G + A R KGF +K P I+++ +Q D+ SK + E Sbjct: 178 CNAMGGK-GKIIMTQGALGHTGAQGRAKGFNNVVKQFPGIEVLDTQPADWDVSKTARLWE 236 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 +++ I + HNDDM + A +K G +IL G +D +P +A+ +G Sbjct: 237 TYLTKY---PQIDAAFFHNDDMALAAANIMKARGR---TNILIGGVDAMPPAIQAVSEGR 290 Query: 262 ANASVE 267 A+V Sbjct: 291 MFATVR 296 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 E QI+ V + +DAI IAP + G P +K+A DA I V + + D Y Sbjct: 100 EEQIQLVEQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSY--- 156 Query: 126 VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR 185 V A N G + L +++ G+ V+ ++G G S + +R +GF EA+K P I+++ Sbjct: 157 VGAQNFDVGYSLATALFEKLGGQG-KVILIEGKAGNSTSEERAEGFKEALKEYPGIELLA 215 Query: 186 SQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG 245 SQ D+ R+ VME+ ++ + I V DM +G I+AIK AG K+I++ Sbjct: 216 SQPADWDRASAMTVMENCLQTYD---QIDGVLTLTKDMGLGTIEAIKSAGRD--KEIVSM 270 Query: 246 SIDGVPDIYKAMMDGEANAS 265 + D D+ A+ G+ AS Sbjct: 271 TFDVDDDVISALKAGDLYAS 290 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 11/220 (5%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + +++ D Q Q V++F+A GV AI + PV E + K A DA++P+ ++R Sbjct: 52 VNVQMEDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQ 111 Query: 114 -IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV----NGKPCNVVELQGTVGASVAIDRK 168 +V + +D + G L + + + GK NVV + G + + R Sbjct: 112 PANVDRLPETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRT 171 Query: 169 KGFAEAIKN--APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 K + I +K++ Q+ ++ R++ +M +++ A G V A+ D+M IG Sbjct: 172 KDVHDVIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA---GIQFDAVIANADEMAIG 228 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 AIQA++ AGL P KD + IDG D + M G + +V Sbjct: 229 AIQAMRSAGL-PVKDYIVAGIDGGRDGIELMRQGYLDVTV 267 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 13/219 (5%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 PL +G+S ++ + + ++ AE+ GI + IAD + Q+ Q+ + QG+ A Sbjct: 39 PLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVIADQKSSQQEQVSGSLDLINQGISA 98 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + I PV + + A +IPV + D+ + Y + ++N G+L + +V Sbjct: 99 LIITPVQPSALPSTIDAAHGEKIPVVV----ADIGTEGDYDGYILSNNYEGGRLAAEHVV 154 Query: 143 KEVNGKP----CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 +++ G P V+EL G+ V +R GF + + N +I+ S G+ T G Sbjct: 155 EKLGGTPGPHQVGVIELH--AGSVVGEERVSGFVDRLGEEENFEIVSSLDGNDTVDGGFT 212 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 + + A + ++YA NDD +GA +A++ AG+ Sbjct: 213 AAQDMLSAN---PELDVIYAANDDSAVGASRAMETAGVS 248 >UniRef50_A8W015 Rcorf44 n=7 Tax=Alphaproteobacteria RepID=A8W015_AGRRH Length = 380 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 12/175 (6%) Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 Q+ Q+ + +AQ VDAI + PV +T +K+A A IPV + ++ +D Y T Sbjct: 121 QKKQVADIEDLIAQKVDAIIVQPVTSTSANASMKKAIAAGIPVIVHTGRVETED---YTT 177 Query: 125 TVTADNILEGKLIGDWLVKEV--NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 + GK++GDWLVK V NGK + L+G G +R G E++K N+K Sbjct: 178 EIQGGAEHFGKVMGDWLVKTVGDNGK---IWVLRGLAGHPEDTNRYNGLLESLKGT-NVK 233 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 I+ + GD+ KGK V E+ N ++ +++ DM + K+ G K Sbjct: 234 IVAEEHGDWQYDKGKSVCETLYL---NSPDVDGIWSSGADMTRACVDVFKQFGAK 285 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 11/199 (5%) Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 Q + + +GVDA+ +AP+ +A+ +IPV L+D + K ++ T Sbjct: 85 QTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKSFVGT-- 142 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 NI GKL G+++ K++ K + ++G G +R +G +A++ A IK++ Q Sbjct: 143 -GNIAAGKLGGEYISKKLK-KGDEAIIIRGVPGDRTQDERTQGAQKALE-AAGIKVVEIQ 199 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 + R K VME+ ++ NI V+ ND+M +GA++A+++AG K+I++ + Sbjct: 200 PANSEREKAISVMENLLQTH---PNIKGVFCTNDEMALGAVKALQQAG---KKNIISIGV 253 Query: 248 DGVPDIYKAMMDGEANASV 266 DG PD K++ +G +V Sbjct: 254 DGSPDALKSIKEGGLTGTV 272 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 17/296 (5%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 T+G S S + A + K A G L + + Q+ V++ V Q V A+ Sbjct: 29 TIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQNLVTQQVGAVI 88 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 A AT + EAK A IPV +ID + + T + +D++ + D+L K+ Sbjct: 89 FAMQDATAGAAGVAEAKGANIPVI----AIDQRPQGDVTTFIGSDSVKASTELCDYLAKQ 144 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFI 204 + GK N+ ++G +G+S I+R KG ++ P+IK++ + + D+ +K V + + Sbjct: 145 MGGKG-NLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDENKAYNVAQDVL 203 Query: 205 KAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANA 264 A + ++A ND M +GA +A +AG K + S+DG P +Y A+ G+ A Sbjct: 204 TAN---PELQAIFAQNDGMALGAAKAAAQAGRSNLKIV---SVDGFPQVYDAIESGQVLA 257 Query: 265 SVELTPNMAG--PAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY 318 ++ P G A++ + +K L + L KE LE+ ++ GY Sbjct: 258 TMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVL----VTKENLEEARSAGY 309 >UniRef50_D2PTU2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PTU2_9ACTO Length = 361 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 86/150 (57%), Gaps = 5/150 (3%) Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 D +++ +T + + G+ IGD L + + G ++ LQG + + A DR G ++K Sbjct: 144 DYGKWLSHITYNGVESGQQIGDALAQAIGGSG-GIIALQGVLDTAAAKDRFAGLQASLKK 202 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 +K++ Q+ +F+R++ V ++ + +G N+ ++A NDDM +GA++A+++AG + Sbjct: 203 NTGVKLLDQQAANFSRAEALAVTKTLLT--KHGANVKGIWAANDDMALGALEALQQAG-R 259 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVE 267 GK + G ID VPD A+ +G A+V Sbjct: 260 AGKVAVVG-IDAVPDAVTAVKNGTMTATVS 288 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 11/249 (4%) Query: 27 GFSQVGSESGWRA-AETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 G S+ + WR+ E ++A+ G+ + A + Q Q+ + + QG + + Sbjct: 60 GVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGLLV 119 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 +P +P ++ A I V ++ ++ + + Y+ V DN G + W + Sbjct: 120 SPQTDNNLQPAMETAASRGIAVVNVNDAV-IPSATQYVGNVQRDN---GVRVAQWFIDNR 175 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIK 205 G V ++G G A R GF I A N +++ S +++R + + + ++ Sbjct: 176 PGG-GKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDAASTILQ 234 Query: 206 AENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 265 ++ YA+ND M +G ++A+K A L+ + + DG+PD Y ++ G+ + Sbjct: 235 QH---PDLIGFYANNDGMALGVVEAVKAANLQ--EQVSVFGTDGIPDAYASIRAGDLTGT 289 Query: 266 VELTPNMAG 274 V+ P + G Sbjct: 290 VDSFPVLTG 298 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 21/248 (8%) Query: 26 VGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +GFSQ + WR A + + E A L D Q+K + + G+ + Sbjct: 27 IGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIEELLRNGIHLLI 86 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 ++P + PV+++A +PV ++DR Y V DN GK +G++ Sbjct: 87 VSPNESDPLTPVIEKAYKQGVPVVVVDRR---TSSPYYTAYVGGDNYQVGKTVGEYAAAL 143 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSG----DFTRSKGKEVM 200 + G ++E+ G +S A DR +G +A+ P+I+ + + +G D +S+ ++V+ Sbjct: 144 LGGN-GKMIEITGLPRSSPASDRHRGLVDALATRPSIRRVATLNGQWQKDIAKSELRKVL 202 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY---KAM 257 F ++ +++A N+ M +GA + + + P + I +DG+P + + + Sbjct: 203 PRF-------PDLDLIFAQNEVMAMGAREVCND--IFPDRKIRVIGVDGLPGQFGDIQMV 253 Query: 258 MDGEANAS 265 DG A+ Sbjct: 254 YDGHITAT 261 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 11/218 (5%) Query: 24 LTVGFSQVGSESGW--RAAETNVAKSEAEKRGITLKIADGQQKQ-ENQIKAVRSFVAQGV 80 T+G+ + W + AE A +E + I + Q + QI V+S +++ V Sbjct: 47 FTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQISNVQSMISRRV 106 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 DAI + P+ + PV+++A A IPV L+ D +D + V AD+I+ G+ +W Sbjct: 107 DAIIMTPISPSASVPVIQQANRAGIPVILVAGQADTRDTA---AEVRADDIVFGRTGAEW 163 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 LV+E+ G+ + L G G S R KG + P+I+++ + ++ K + Sbjct: 164 LVRELGGR-GKIYVLNGLPGFSTDTLRWKGAKDVFDRYPDIEVVADAHAAWDTARAKTAV 222 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 + + A + V++ M +GAIQA + AG KP Sbjct: 223 SNMLAAH---PEVDGVWSQGGAMTLGAIQAFRAAG-KP 256 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 49 AEKRGITLKI--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 AE GI +++ AD + + Q+ A+ + V G DAI ++P+ T P + A +AEIP Sbjct: 115 AEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDAIILSPIDGTNLIPGIVAANEAEIP 174 Query: 107 VFLLDRSIDVK---DKSLYMT-TVTADNILEGKLIGDWLVK--EVNGKPCNVVELQGTVG 160 V L +D + D ++ +T + +G + + ++ E GK V L G G Sbjct: 175 VINLGPGVDAEALADAGGHLDGKITVNFEEQGSTVANDMISRMEDGGK---VAILAGLEG 231 Query: 161 ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 A ++ R G +N ++++ +Q+ D+ K E + + A + K I +A N Sbjct: 232 AGQSVGRTNGAKTVFENTEGVELVAAQACDWDTEKAYEATKDILTAHPDLKGI---FACN 288 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 D+M + A+QA++E G KD++ +D D A+ DG Sbjct: 289 DNMALAAVQALQEMG---NKDVMVYGVDYTTDAKAAIEDG 325 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 127/264 (48%), Gaps = 11/264 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQ 62 R+L V ++ + ++A A + F+Q + +R A+ + E A ++ +D Q Sbjct: 5 RMLRVLLLAFCLPAVA-AENKVIAFAQDTMANDFRRAQVYEVRDEVARYPQLSFVYSDAQ 63 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY 122 + I+ + F+ Q VD + + PV+ +A A IPV +LDR I+ K + Sbjct: 64 GQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQ---F 120 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 + + +DNI G++ +++ +NGK V+ +G A V R KGF I I+ Sbjct: 121 TSFINSDNIRIGEIGAEYIASRLNGKGL-VLLFEGLQKADVTQLRSKGFLTEIGKHSGIR 179 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 +IR ++G++ R ME + ++G + +++ +D M+ G + ++ + P + Sbjct: 180 VIR-RTGNYLRKDAVVEMEKLV---SDGIRVDAIFSESDSMLSGVRMVLSKSNIDPRSVV 235 Query: 243 LTGSIDGVPDIYKAMMDGEANASV 266 + G D + +A+ DG + SV Sbjct: 236 MVGC-DYTSEARQAIRDGTQSGSV 258 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 41 ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 100 E +A+ AEK G ++ + + + + + + +AI + P A G +++A Sbjct: 47 EGKIAEETAEKLGYEADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKA 106 Query: 101 KDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG 160 +A IPVF+++ I+ + L + ++N L +K V G VEL+G Sbjct: 107 VEAGIPVFIINAEIN--QQGLAEAQLVSNNAQGAALGAQQWIKSV-GDSARYVELKGAPS 163 Query: 161 ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 + A R G+ + P ++ + S ++ R++G +S ++A +I V + N Sbjct: 164 DNNAATRSNGYETVLSQYPGLEKVGSDVANWDRTQGFNKTQSMLQAN---PDIDGVISGN 220 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 D+M +GAI A+KEAG D++ G DG PD +A+ GE + +V L P Sbjct: 221 DEMALGAISALKEAGKL--DDVVVGGFDGSPDAVEAVKAGEMDYTV-LQP 267 >UniRef50_B1G3A1 Periplasmic sugar binding protein-like protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G3A1_9BURK Length = 339 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 14/224 (6%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAE---KRGI--TLKIADGQQKQENQIKAVR 73 A AA +G S + WR + AK + + +G+ L I QI+ +R Sbjct: 19 AWAAAPDIGLSNGYFGTEWRNQMVDGAKEQFQTYKSKGLAGNLVIQQSGTNTGQQIQDMR 78 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + + Q AI + AT V+ EA+ ++IPV D+++ K Y VT D+ Sbjct: 79 NMIRQKTGAIMVDANSATALNGVISEAQRSKIPVVSFDQAVSNK----YAVNVTVDHYKW 134 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 G+ +W+V+++NGK NVV L G G A RKK + P IK++ S G++ Sbjct: 135 GQRYAEWIVQQLNGK-GNVVVLDGIPGHPAAEARKKAALDTFAKYPGIKVVWSGYGEWDE 193 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 +K + VM + I A+ I V+ D M +G ++A + A + Sbjct: 194 AKAQAVMATVIAAQ---PKIDAVFTE-DAMALGVLRAFENANRR 233 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 83/315 (26%), Positives = 130/315 (41%), Gaps = 39/315 (12%) Query: 1 MWKRLLIVSAVSAAMSSMALAA-----------------PLTVGFSQVGSESGWRAAETN 43 M KRLL + V+A ++MA+ VGF+ + A + Sbjct: 1 MKKRLLSILMVTAMCATMAVGCGTADDTKDSSSSSKGKSDYLVGFANNSDTYNYCAKFRS 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 K E +GI++ + D Q + F+ Q + + G P L+ AKDA Sbjct: 61 YLKDATEAKGISITVTDAGGDTNVQNGQIDDFIVQNANVVSAISNDLDGSIPALEAAKDA 120 Query: 104 EIPVFLLDRSI---DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG 160 +P S+ D D +Y+ + D GK G++L + +++ G Sbjct: 121 GLPYVSFLTSVSGGDDYDGYIYVGSPNED---AGKAQGEYLC-DAFPDGASILYFTGAPN 176 Query: 161 ASVAIDRKKGFAEAIKNAPNIKIIR----SQSGDFTRSKGKEVMESFIKAENNGKNICMV 216 +DRKKG EA+K PNIKI+ S D S ++ + S+ K I + Sbjct: 177 DQQYVDRKKGLEEALKKNPNIKILDEYNVENSKDLGMSTAEDSLLSYDK-------IDAI 229 Query: 217 YAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN-ASVELTPNMAGP 275 NDD +G ++A+K AG +L IDG D +++ DGE +++ A Sbjct: 230 VCQNDDGALGVVEALKSAGKLDSIQVL--GIDGSDDALQSIQDGEMTMTALQDAKAQAEA 287 Query: 276 AFDALEKYKKDGTMP 290 D EK KK GT P Sbjct: 288 GADIFEKLKK-GTDP 301 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 108/217 (49%), Gaps = 8/217 (3%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A + + + +D Q+ V +++ VD I IA V + + ++ A +A IP+ Sbjct: 64 AAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEANIPIL 123 Query: 109 LLDRSIDVKDKSLY---MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 +I K+ Y +T V + + GKL G+ + K VV ++G G S I Sbjct: 124 AFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVLIEGRPGTSPQI 183 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 +R+KG EA+ N +++ +Q+ ++ + + +++E I+ + I ++ A +D+ I Sbjct: 184 NRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQ---KNQTIDVIIAQDDNSAI 240 Query: 226 GAIQAIKEAGLKPGKDI--LTGSIDGVPDIYKAMMDG 260 GA A+KEA LK + L GS +G+ + ++DG Sbjct: 241 GAGMALKEANLKDKILVIGLGGSTEGLNAVKSGLIDG 277 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 40 AETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKE 99 AE A+++A++ G + Q + + + + +G AI + A +K+ Sbjct: 44 AEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIILDNAGADASVAAVKK 103 Query: 100 AKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTV 159 AKDA IP FL+DR I+ + + + ++N +L VK + G+ N VEL G Sbjct: 104 AKDAGIPSFLIDREINA--TGVAVAQIVSNNYQGAQLGAQEFVK-LMGEKGNYVELVGKE 160 Query: 160 GASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAH 219 + A R +G+ + I + P++K + QS ++++++ ME+ ++A +I V + Sbjct: 161 SDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYSKMETILQAN---PDIKGVISG 217 Query: 220 NDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP--AF 277 ND M +GAI A++ AG KD++ DG D+ ++ G A+V L P A A Sbjct: 218 NDTMAMGAIAALQAAGR---KDVIVVGFDGSNDVRDSIKSGGIKATV-LQPAYAQAQLAV 273 Query: 278 DALEKYKKDGTMP-EKLTLTKSTLYLPDTA 306 + + Y K+ T P E+ L L D A Sbjct: 274 EQADAYIKNKTTPKEEKQLMDCVLINADNA 303 >UniRef50_B1M7C3 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M7C3_METRJ Length = 318 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 48 EAEKRGITLKIADGQQKQ-ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 +A+ RG+ + A + E QI VR F+A+ VDA+ + PV T E + + A +A++P Sbjct: 58 QAQARGVAARFAYAPEGAGEVQIAQVRRFIAEKVDALVVMPVDPTAREEINRLALEADVP 117 Query: 107 VFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAID 166 + L+ + + +T V ++++ G+L L + + G V + G+ ++ Sbjct: 118 LVLIGQGPRTDWFAGRVTHVVPNDLVAGRLQMRKLAQMLGGV-GRVAIIAGSPSDPGSVL 176 Query: 167 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 R++G E + +P ++++ + D +R+ + + +I G I + A +D+M +G Sbjct: 177 RQRGAGEVLSVSPGLRLVAETTADGSRASARAAVGGWIA---RGIGIDAIAAGSDEMALG 233 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 A AI+ AG+ G+ IL G D D +AM D Sbjct: 234 ASDAIEAAGIPVGQ-ILIGGADATADGMQAMQD 265 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 5/219 (2%) Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 GI + D Q Q ++ +Q +DAI + P P +++A + IP+ + Sbjct: 89 GIMATVMDPQGDPAIQFDQIQDMASQNMDAIVVWPTSQNALIPAIRDASRSGIPIITSNS 148 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 I + + D+ + + L + G+ N+V ++GT G SV+I R F Sbjct: 149 PIGEAGRRYILGHTGPDDCALAEQAAEMLGSAIGGE-GNIVVVEGTPGYSVSILRGNCFL 207 Query: 173 EAI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 + + + P++ ++ SQ+ ++ R K + VME+F+ G I VYA +D M +G + A+ Sbjct: 208 DKLADDFPDVNVLDSQTAEWNREKAQTVMETFLT--RFGDQIDGVYAFDDGMALGVVSAL 265 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 + AG G D+ S + + + AM +G + S + +P Sbjct: 266 QAAGRSAG-DVKIVSCNQFGEGWDAMKEGWISGSGKQSP 303 >UniRef50_A1WMZ2 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Bacteria RepID=A1WMZ2_VEREI Length = 330 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 21/259 (8%) Query: 24 LTVGFSQVGSESGWRAA---ETNVAKSEAEKRG----ITLKIADGQQKQENQIKAVRSFV 76 LT+G S + ++ A N AK + E+ + +K A G +Q NQ++ + Sbjct: 39 LTLGVSIPSATHSFQGAIVFWANKAKKDLEQAHPGLQVVIKTASGGPEQANQLQDM--LT 96 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 A + A+ I P + + + K + V ++DR + D S ++ DN GK+ Sbjct: 97 ANKIGALVIFPFESAALTKPVAQVKAKGVYVLVVDRGL--TDPSAQDAYLSYDNTAFGKI 154 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 +++ K + GK VV L+G + ++ +R GF +KN P IK++ ++ ++ R Sbjct: 155 PAEFMAKTLGGK-GQVVALRG-IATTLDNERMDGFNAVLKNNPEIKLLDAKYANWNRDDA 212 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 +VM+ ++ +I V+A +DDM +G ++AI++A K K + G G + KA Sbjct: 213 FKVMQDYL---TRFAHIDAVWAADDDMAVGVLKAIEQAKRKDIKLVFGGG--GSKGMIKA 267 Query: 257 MMDGE---ANASVELTPNM 272 +MDG A+V +P Sbjct: 268 LMDGSNPVIQANVSFSPKF 286 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 129/253 (50%), Gaps = 25/253 (9%) Query: 33 SESGWRAAETNVAKSEAEKRGITLKIADGQQKQEN------QIKAVRSFVAQG-VDAIFI 85 S+ W+ E V ++ A++ GI + ++K QI + + +D + I Sbjct: 88 SDPFWQQMEQGV-QTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNNDLDGLVI 146 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 AP + P++++A I V ++D ID +T VT DN G+++G+W+++++ Sbjct: 147 APEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ---ILTFVTFDNFEGGQILGEWVIQKL 203 Query: 146 N-----GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP---NIKIIRSQSGDFTRSKGK 197 N++ L+G++ I+R++GF E +K A +++I+ +S D+ K K Sbjct: 204 TQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKSADWETKKAK 263 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 + +++++ I ++ A +D M +GA +A++EA K G I+TG DG P A+ Sbjct: 264 MITQAWLEK---FPTIDVIMAADDQMAVGASEAVQEAN-KSGI-IITG-FDGTPYGLNAI 317 Query: 258 MDGEANASVELTP 270 G+ +A++ P Sbjct: 318 KTGQIDATINQLP 330 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 14/246 (5%) Query: 37 WRAAETNVAKSEAEKRGIT--LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWE 94 W A V ++ A++ G+ ++ + Q E Q+ + + + A+ A + +T Sbjct: 41 WGAMGQGV-EAGAQEAGVAYYMQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLL 99 Query: 95 PVLKEAKDAEIPVFLLDRSID---VKDKSLYMT-TVTADNILEGKLIGDWLVKEVNGKPC 150 P LK A+DA I V LD ++D + + + +T + +DN+L G +++V ++ Sbjct: 100 PCLKSAQDAGIKVVDLDGNLDQAILDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADAT 159 Query: 151 N-VVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAEN 208 V+ ++G G R GFA+ + AP ++I+ S GD+ R K + + N Sbjct: 160 GPVLVIEGLSGNITGQKRASGFADKLAELAPGLEIVASLPGDWDRGKAANITNDILT-RN 218 Query: 209 NGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVEL 268 G + ++A ND M +GA++++ AG G +++ +DG D K++ +G ASV Sbjct: 219 PG--LVAIFAANDGMALGAVESVFAAG--KGGEVIIVGVDGNSDAVKSINEGRLTASVAQ 274 Query: 269 TPNMAG 274 P + G Sbjct: 275 LPYLVG 280 >UniRef50_A0LST2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A0LST2_ACIC1 Length = 384 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 32/265 (12%) Query: 53 GITLKIADGQQKQE--NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 G+ L ++ G+ + +QI+ + + ++ G I IA + + L+ AK A + V ++ Sbjct: 89 GVDLHVSAGKADDDATSQIQQIDAAISAGYKGIIIA-INSDAVNTALQRAKAAGLLVVVV 147 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA--SVAIDRK 168 D S+ T DN+ G IG W+ +++NG ++ L +V +DR Sbjct: 148 DTP--PIPASIADVTYATDNLQAGLFIGKWMAQKLNGANADIAMLDDLANQVITVDVDRD 205 Query: 169 KGFAEAIK---NAPNIKIIRSQSGDFTRSKGKE------------------VMESFIKAE 207 GF + + PN+ +SG +T KG ME+ + + Sbjct: 206 HGFLQGMGIPVGNPNVNGQEPKSGHYTGGKGGSYKIACQLPTNGSATGGLSAMETCLSKD 265 Query: 208 NNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANA-SV 266 NI +VY N+ GA QA+K AG PGKD+ +IDG + + GE A S Sbjct: 266 ---PNINVVYTINEPAAKGAAQALKNAGKTPGKDVTIVTIDGSCNYLSLLTSGEIGADSG 322 Query: 267 ELTPNMAGPAFDALEKYKKDGTMPE 291 + MA DA+ ++ K G P Sbjct: 323 QFPGKMAQLGVDAIAQFAKTGAKPS 347 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 9/208 (4%) Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 Q+ V SFVAQGV I +AP+ AT ++ A+ A+IPV + D + D +++ V Sbjct: 87 QVDVVSSFVAQGVSGIVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDD---HVSFVA 143 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII-RS 186 DN G+L G+ L K + G+ VV L+ G++ R+KGF +A++ P + + + Sbjct: 144 TDNEAAGRLAGEHLGKAI-GEDGKVVVLRYQEGSASTQHREKGFLDAVRAMPGVTVASEN 202 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKN-ICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG 245 Q G T ES + A+ + I V+ N+ G +QA+++ + + + Sbjct: 203 QYGGATTESAFHKSESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNV--ARKVKFV 260 Query: 246 SIDGVPDIYKAMMDGEANASVELTP-NM 272 D + A+ +G+ A V P NM Sbjct: 261 GFDASEKLLGALREGDIEALVVQNPFNM 288 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 12/206 (5%) Query: 37 WRAAETNVAKSEAEK---RGIT--LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVAT 91 WRA +EAEK G+ I + QI ++ + + VD I I T Sbjct: 62 WRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDINKQISDMQDLITKKVDGIVITAASPT 121 Query: 92 GWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCN 151 P ++EA +A I V D +D ++ + TV D G++ DWLVK+++GK Sbjct: 122 ALAPAVEEATEAGIKVVSFDNVVDTDEQ---VATVGIDQTEFGRVCADWLVKKLDGKG-K 177 Query: 152 VVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGK 211 +V L G G + R G E K P+I+I+ S + + ++GK MES + A Sbjct: 178 IVVLNGIAGTANDTMRWNGAEEVFKQYPDIEILGSANASWDYAQGKAAMESMLSAY---P 234 Query: 212 NICMVYAHNDDMVIGAIQAIKEAGLK 237 I V++ M GAI A AG K Sbjct: 235 EIDGVWSQGGAMTQGAIDAFIAAGRK 260 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 11/210 (5%) Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 E Q+K V F+ +GV AI I+PV G PVL++A+DA IPV ++D ++ +T Sbjct: 107 EGQVKLVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNA---DFPRST 163 Query: 126 VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTV-GASVAIDRKKGFAEAIKNAPNIKII 184 V+ ++ GK + L KE+ G + V GA R+KGF++ + PN KII Sbjct: 164 VSTNDEAAGKFAAEKL-KELAGDAGGTFAIVSAVPGAVQEGGREKGFSDELGTYPNYKII 222 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 + G R++ + + + + +I Y N+ G ++E L K+ + Sbjct: 223 GTYYGKGDRNQTYNITQDIL---TSNPDITGFYTVNEGSSAGVTLGVREGDL---KEKIF 276 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAG 274 + D ++ A+ DG + +V P + G Sbjct: 277 VAFDPSTEVLDAIRDGYVDGAVAQNPYLIG 306 >UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2X7_9CLOT Length = 324 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 11/252 (4%) Query: 40 AETNVA-KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 98 AET A + ++ G + D + QI V +F+ +GVDAI I P E V+K Sbjct: 55 AETCTAIEDNCKENGWKCTVVDCSSTAQTQITQVENFIQKGVDAIVINPTDQAALETVMK 114 Query: 99 EAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGT 158 EA DA I V D D D L + + GK DW+ ++GK + Sbjct: 115 EAMDAGIKVISWDIDSDAADCCLLVDNYNVGYEI-GKQAADWIEDNLDGKAEVCILDYPE 173 Query: 159 VGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVY 217 GA V I R G +AI +PN K++ S + G + ME+ +++ + + +C V Sbjct: 174 AGAEV-IKRADGINDAITELSPNSKVVAQVSHQGSTDGGMQAMENVLQSNPDCRVVCSV- 231 Query: 218 AHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE-ANASVELTPNMAGPA 276 D +GA +A+K AG+K G++ S DG + + GE S+ L ++ A Sbjct: 232 --GDGGAMGANEALKAAGIK-GEEAGIFSADGTTEFLSKIAAGEPCKMSILLDDPLSKAA 288 Query: 277 --FDALEKYKKD 286 D L+K KD Sbjct: 289 SITDTLDKLLKD 300 >UniRef50_B1ZDA2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZDA2_METPB Length = 308 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 11/228 (4%) Query: 41 ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 100 ++ V + A K ++++A K E Q+ R+ + A+ + PV + + + Sbjct: 44 QSAVVSTAASKFSASVEVAQAAGKGETQVVQARAALDAKPAALIVTPVDDASARTITEMS 103 Query: 101 KDAEIPVFLLDR--SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGT 158 A IP+ ++R S V ++ M V+A++++ G++ L + + G NV L+G Sbjct: 104 AAAGIPLVFVNRRPSGPVTNR---MAIVSANHLVAGRVQMRMLAQRL-GDRGNVAILRGK 159 Query: 159 VGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 + A +R G E + P +K++ S D++R + ++ + ++++ +G + A Sbjct: 160 DSDNAAQERTAGVKEILGQRPGLKLLAEASADWSRRQAQDQVTAWLR---SGLKFDAIAA 216 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 +ND+M +GA+ A+K AGL GK IL G +DG D A+ G+ + SV Sbjct: 217 NNDEMALGAVAALKAAGLS-GK-ILVGGVDGTSDGIAAVKSGDVSVSV 262 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 11/189 (5%) Query: 48 EAEKRGIT--LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 E +RGIT L I QI+ +++ + +GVDAI + P G L+EA + I Sbjct: 77 EYMERGITNELVIESADTDVAGQIQQLQNLINKGVDAILVNPSDVNGLNDTLQEAINKGI 136 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 V +D+ ++ + V D K+ WL +++ G+ N+V ++G G + Sbjct: 137 IVISVDQELNTPG----VYNVGIDQKEWAKISARWLAEKLGGQ-GNIVLIEGFPGHPANV 191 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 R +G E +K PNIK++ ++G + + G++VM +F+ + N Y D M I Sbjct: 192 ARMEGVEEVLKEYPNIKVLGRETGKWDEATGQQVMSNFLASFPNLDG----YWTQDGMAI 247 Query: 226 GAIQAIKEA 234 GA+QA+ A Sbjct: 248 GAMQAVMAA 256 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 16/261 (6%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 K +A++ G+ + + D + QI ++ +AQGVD I ++P + P ++ DA Sbjct: 60 KDKAKELGVEVTVLDAKGDSSTQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGK 119 Query: 106 PVFLLDRSI--DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 V +D I D+ D + V DN GKL + L K + G+ V+E QG GA Sbjct: 120 TVTTVDSVIPGDIADAA-----VAFDNEKAGKLGAEALAK-LMGEKGTVLEYQGAKGAYH 173 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 AI R KGF + IK P IK+I + +T + A++ +I +++HND+M Sbjct: 174 AILRGKGFNDGIKQFPGIKVI-GRDAQWTADNALSLTVDNFTADS---SINGLFSHNDEM 229 Query: 224 VIGAIQAI----KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDA 279 V G + + K+A + I +DG P + +G +A+++ P G Sbjct: 230 VRGIVSGLSQINKDAPVGAANHIPLVGVDGTPLALDRIRNGVQDATMDQNPFEMGALALQ 289 Query: 280 LEKYKKDGTMPEKLTLTKSTL 300 + DG K+ LT + L Sbjct: 290 AQVDLLDGKQVPKMQLTDTKL 310 >UniRef50_D0B1Z2 Periplasmic binding protein/LacI transcriptional regulator n=47 Tax=Rhizobiales RepID=D0B1Z2_BRUME Length = 320 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 21/294 (7%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEA-----EKRGITLKIADGQQKQENQIKAVRSFVAQ 78 +T+G S ++ GW A A+ A E G+ + I +Q A++ Q Sbjct: 31 VTIGVSIPAADHGWTAGVVYHAERVAKLLMEEHPGLNV-IVKTSPDAASQANALQDLAVQ 89 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G+D + + P +KE KD V L+DR+ D ++ V + G++ G Sbjct: 90 GLDGLVVLPTDPDPLVNAIKEIKDKGTFVALVDRAPSNNDNTIRDLYVAGNKPALGQVAG 149 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAID--RKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 +++ + VV ++G + ID R+ GF + I+ + N+K++ Q G++ R Sbjct: 150 EYI--KATTPDAQVVVIRGL---PIPIDQQRQDGFDKGIEGS-NVKVLDRQYGNWNRDDA 203 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 VM+ F+ I +V+A +DDM++G ++AIK++ + ++ G+ G D+ K Sbjct: 204 FRVMQDFLTKY---PKIDVVWAQDDDMLVGVLEAIKQSNRSDIQYVVGGA--GSKDMIKR 258 Query: 257 MMDGEANASVEL--TPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 +MDG+ V++ P M A + + D + +TL D AK+ Sbjct: 259 VMDGDKLVPVDVLYPPAMVSTAMELAAGHFYDQIPVSGDYILDATLVTEDNAKD 312 >UniRef50_C3KNR3 Ribose ABC transporter, ribose-binding protein n=5 Tax=Rhizobiales RepID=C3KNR3_RHISN Length = 341 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 18/224 (8%) Query: 21 AAPLTVGFSQ--VGSESGWRAAETNVAKSEAEK---RGITLKIA--DGQQKQENQIKAVR 73 A +G S VGSE WR + AK A K +G+ ++++ QI +R Sbjct: 24 AETFKIGLSNGWVGSE--WRTQMIDEAKEAAAKWKDKGVDVEVSVQSANVDVPGQIAHIR 81 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 +F+A+GV+AI + P T ++P+ +AK+A I V D + D ++Y V D Sbjct: 82 NFIAEGVNAIIVNPNSPTAFDPIFAQAKEAGILVIATDAEVSSPD-AVY---VGIDQTAW 137 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 G WL + ++GK VV + G G R G+ +K+ P+I+I+ + ++ + Sbjct: 138 GAAGAKWLAETLDGK-GKVVAINGVAGHPANEMRVAGYKSVLKDFPDIQIVNEVNANWDQ 196 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 ++G++ M++ + + + + D M GA ++I +AG K Sbjct: 197 AQGQQAMQNILATYPDINGVVV----QDGMAAGAWKSIMDAGKK 236 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 9/211 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 T+G S + + + + + + EA + + L ++ Q QI + F+ + VDAI Sbjct: 40 TIGVSLLTQQHPFYLSLKDAIEKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAII 99 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 I+PV + G +K+A+ A IPV +D D + ++ T DN GK+ G+ + + Sbjct: 100 ISPVDSKGVLAAVKKAEAANIPVITVDVPAIGVDVAAHVAT---DNYTGGKIAGEEMARL 156 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFI 204 +NGK V TV + V R +GF E I P+IKI+ Q+G TR + ++ I Sbjct: 157 LNGKGEVAVIEYPTVDSVV--QRIEGFKEVIAKYPDIKIVAIQAG-ITRPEALTAAQNMI 213 Query: 205 KAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 +A KN+ ++ DD + A+ A+K AG Sbjct: 214 QA---NKNLGGIFGFGDDAALAAVAAVKSAG 241 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 23/244 (9%) Query: 33 SESGWRAAETNVAKSEA--EKRGITLKIA-DGQQKQENQI---KAVRSFVAQGVDAIFIA 86 S WR + +SE + G+ + I DG + ++I + V QG +A+ ++ Sbjct: 83 SNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLVNQGYNALMLS 142 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT--VTADNILEGKLIGDWLVKE 144 P+ + + AK +IP +I+V D + V D G+L +W+ K+ Sbjct: 143 PISDSNLTASVDNAKGKKIP------TINVNDGLIASADYFVGPDAYQNGELAAEWVSKQ 196 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGKEVMESF 203 + G +V + G A A +R GF IK N + ++ Q+ D+ R K KE+ ++ Sbjct: 197 L-GDKGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGLNVVAEQNADWDRQKAKELASTW 255 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 I+ ++ ++ +NDDM +G ++A++EA KDIL +DG+ + Y ++ G+ + Sbjct: 256 IQ---QNPDLKAIFCNNDDMALGVVEAVEEA----KKDILVVGVDGIGEAYDSIRAGKLD 308 Query: 264 ASVE 267 A+V+ Sbjct: 309 ATVD 312 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 13/304 (4%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKA 71 S A SS A +G + + A T+ K A+++G+ L I D ++ +++ Sbjct: 28 SNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKKDVGSELNQ 87 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 V + + VDA+ + P+ + K A IP+F+L Y + + D+ Sbjct: 88 VEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKSYIGVDDT 147 Query: 132 LEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 + G++ ++L K + NG N+V G GAS RK GF + I N KI+ Sbjct: 148 VAGQMQAEYLNKLMPNG--GNLVFAAGVYGASWTDRRKNGFDKTIN--ENFKIVAEFQAK 203 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 +R K ME ++ +G+ I V A+ND+M IGA AI +AG + G +DG Sbjct: 204 GSRDDAKRNMEDTLQRFPSGQ-IDAVVANNDEMAIGAASAIADAGRTAEFKAVVG-VDGT 261 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALE---KYKKDGTMPEKLTLTKSTLYLPDTAK 307 + + G +A+V + AG A+E + G + + TL TL D Sbjct: 262 EPALQDIEGGTMSATVR--QDSAGQGVKAVEVVTDFLNGGNVDNRYTL-PFTLITKDNLS 318 Query: 308 EELE 311 E L+ Sbjct: 319 EFLK 322 >UniRef50_D1N9K7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9K7_9BACT Length = 319 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 18/259 (6%) Query: 21 AAPLTVGFSQVGSESGWR-----AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 A L VG S ++ GW +AE + EA + + I+ + E Q+ + + Sbjct: 25 AKKLRVGVSIPAADHGWTGGIVWSAEDAKKRLEAANPDLEIVISTARDAAE-QVSRIENL 83 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + + V+A+ + P V + A+ I + +DR +D K + V DN G+ Sbjct: 84 MVRNVNALVVLPQEPGPLTNVCEAARKQGIFLVTVDRGLD---KPVQDVNVAGDNAGFGR 140 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + ++GK +++ ++G + V DR F E I P IK++ SQS + K Sbjct: 141 AAAQAIAGALDGK-GDILVMEG-IPCVVNTDRVTAFREEIAKHPGIKVLESQSAYWDTEK 198 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G ++ME+F++ K I V+ +DD+++GA++A+KE+G K K +L G G + K Sbjct: 199 GLKLMENFLQKY---KKIDAVWVGDDDVLLGAMKALKESGRKDVKLMLGGG--GSKHVVK 253 Query: 256 AMMDGE--ANASVELTPNM 272 ++D + N +V P M Sbjct: 254 MVLDKDPIVNMTVTYPPKM 272 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 32/237 (13%) Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF----------LLDRSID 115 E Q++ + + + Q VDAI + + G +++A+DA + V L +D Sbjct: 124 EEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRTGVD 183 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + M AD L GK G +++ L+G GAS AI+R G + Sbjct: 184 YYESGYTMAKAVADK-LGGK--GKFII------------LEGPAGASNAIERLNGINTGL 228 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 I+I+ SQ+ +F R++G V E+ I+ +I V A ND+ +GA+QA+ A Sbjct: 229 SEYEGIEIVASQTANFKRTEGMSVTENLIQQYT---DIDAVIACNDESALGAVQALTAAN 285 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALE-KYKKDGTMPE 291 + D+L DG D A+ +G A+ P +G A KY D T PE Sbjct: 286 M---SDVLVCGFDGSVDATNAVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPE 339 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 26/285 (9%) Query: 37 WRAAETNVAKSEAEKRGITLKIADGQQKQ--ENQIKAVRSFVAQGVDAIFIAPVVATGWE 94 W+ E +E +G+ + + Q + E Q+ + S + QG D I IAP+ Sbjct: 83 WKGVE-----AETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQGYDGIAIAPLSGVNVL 137 Query: 95 PVLKEAKDAEIPVFLLDRSID----VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPC 150 P + EA I + +D D + V DN+ G ++V + G+ Sbjct: 138 PGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGAKGAQYIV-DTAGEGA 196 Query: 151 NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNG 210 V ++G G + DR +G +A + + II SQ+ D+ R K ++ + I+ + Sbjct: 197 KVAIIEGKSGNQSSEDRTQGAKQAFTDG-KMDIISSQAADWDRQKAMDIASTLIQQNPDL 255 Query: 211 KNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 K I Y ND M +GA+QA+ A K G+ ++ G+ DG + ++ + E +A+V P Sbjct: 256 KGI---YCCNDGMALGAVQAVINAN-KLGEIMIVGT-DGDAEAVSSIANNELSATVAQDP 310 Query: 271 NMAGPA-----FDALEKYKKD--GTMPEKLTLTKSTLYLPDTAKE 308 G +A+E KK GT PEK T +S L + A + Sbjct: 311 AQIGATSLDLLIEAVESGKKGEVGTFPEK-TPVESVLVTAENAAD 354 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 19/230 (8%) Query: 43 NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 102 N +A+ G+ ++ D + QI + ++ AI + + T P +++A++ Sbjct: 88 NTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIVLLAMDGTSIVPTVEKARE 147 Query: 103 AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCN--VVELQGTVG 160 A IPV +++R DV D + + +D+ G++ G+++ + P N VV L G Sbjct: 148 AGIPVVIMNR--DVNDPKVIGSL--SDDREAGRMQGEFMASHL---PPNAKVVYLMGESS 200 Query: 161 ASVAIDRKKGFAEA-IKNAPNIKIIRSQSGDFTRSKGKEVMESFIK--AENNGKNICMVY 217 SVA+ R +GF EA + P++K++ S G +++++G + M ++ E NG V Sbjct: 201 LSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLWLSFFPEING-----VV 255 Query: 218 AHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVE 267 A ND+M +GAIQA+K A G L +D P A+ GE + +V+ Sbjct: 256 AANDEMALGAIQALKAANRLNG--CLVTGVDATPAGLAAVEAGELSQTVK 303 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 23/225 (10%) Query: 24 LTVGFSQVGSESGWRAAETN-VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +TVG + ++AA N + ++ E I + DG Q+ + +F+ QGVDA Sbjct: 62 ITVGATLSDFTISFQAAMYNELLDAQKEYDNIEFILQDGASDSALQVNQIETFITQGVDA 121 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I V+ EP LK+A +A IPVF ++RSI D++ Y + A++ L G+ + + L+ Sbjct: 122 ILI-NAVSDAVEPSLKKAMEAGIPVFAVNRSI--TDENAYSYFIGANDTLSGEQMANCLL 178 Query: 143 KEVNG---KPCNVVELQGTVGASVAIDRKKGFAEAIKNAP---NIKIIRSQSGDFTRSKG 196 + CN++ +QG +GA+ R+ GF + + I+ R Sbjct: 179 DMIEKDQMDSCNILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILE-------RIPC 231 Query: 197 KEVMESFIKAENNGKN------ICMVYAHNDDMVIGAIQAIKEAG 235 K E+ I + N N I + D +GA+QA++ AG Sbjct: 232 KHDKETVISSIQNMLNKYPAGEIDAIVCEGPDDAVGALQAVQSAG 276 >UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Proteobacteria RepID=A5FXE6_ACICJ Length = 328 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 14/249 (5%) Query: 51 KRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 K G +A Q+ +++ +A+ V AI + A +K A A +PVFL+ Sbjct: 68 KLGYGTMVASHNGNAYTQLNLIKTAIARHVAAIILDNAGADSSISAVKLATKAGVPVFLI 127 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 170 DR I+ K + + ++N +L G K + G VEL G + A R +G Sbjct: 128 DREINA--KGIAKAQIVSNNFQGAQLEGTEFAK-LMGYKGTYVELTGLPSDTNAKVRSQG 184 Query: 171 FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 A +K+ +K++ Q+ D+++SKG +V ++ ++A + K + A ND M +GA +A Sbjct: 185 VASVLKHFSGMKMVAVQTADWSQSKGFQVTQTLLEAHPHIKGLI---ADNDTMAMGA-EA 240 Query: 231 IKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP--NMAGPAFDALEKYKKDGT 288 A KP +++ DG PD+ ++ G+ A V L P + A +KY + G Sbjct: 241 ALLAAHKP--NVIVTGFDGSPDVINSIRKGQIKADV-LQPIATFSREAVIEADKYIRTGK 297 Query: 289 M--PEKLTL 295 PEK L Sbjct: 298 TGKPEKQEL 306 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 13/224 (5%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 A+ +G+ L D Q K V F+ QGVD I + P+ + + A IP+ Sbjct: 85 ADAQGVKLITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDSNAAVTEAETINQAGIPLV 144 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 D ++ D + + + +DN L G+L ++ +++ G V L + I+R+ Sbjct: 145 TTDIAVAGGDVASH---IASDNTLGGQLAAQFIGEQLGG--TGKVALINNPTITSLIERE 199 Query: 169 KGFAEAI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF + + + P+I+I+ QSG+ R KG VME+ +++ ++ V+A ND M +GA Sbjct: 200 TGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSN---PDVQGVFAVNDMMGLGA 256 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA-NASVELTP 270 +QA++ A DI+ D + K + +G A ASV P Sbjct: 257 LQAVQAA---QRDDIVIVGFDATEEAVKYIKEGSALKASVAQNP 297 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 15/220 (6%) Query: 49 AEKRG--ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 AE G + K ADG +NQI + +F+ QGVD I + P+ + G +PV+++A A IP Sbjct: 85 AEDYGCEVIWKSADGNF--DNQISLIENFIEQGVDCILVDPLDSEGLKPVIEKASAAGIP 142 Query: 107 VFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAID 166 + +DV+ TTV D ++I + K + G+ L G G V+ Sbjct: 143 TITMAGQVDVETN---YTTVYNDE-ENTRIIAEMTAKMI-GEEGKTALLYGNKGNLVSDL 197 Query: 167 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 R+KG+ ++ PNI ++ Q ++ G + + I A + K I + +D + + Sbjct: 198 RQKGYYAGMEKYPNITVVE-QPTNWDPPTGMKAAQDLIAANPDLKAI---HCISDAVTLA 253 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 A QA+K AG K G+ I+T S DG D KA+ G+ ++V Sbjct: 254 AYQAVKTAG-KEGEIIVT-SYDGNDDALKAVESGQFTSTV 291 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 134/277 (48%), Gaps = 20/277 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M K L+ +S V ++ ++LA LT+G W E V K+ + G+ K Sbjct: 1 MRKLLVFLSVV--LITGLSLA--LTIGVIGKSVHPYWSQVEQGV-KAAGKALGVDTKFFV 55 Query: 61 GQQKQEN-QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 Q++ N Q++ + SF+A+GVD I IAP T P +K+A + IPV LD + Sbjct: 56 PQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSGR 115 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 +Y+ T DN G G ++KE+ G VV G++ A ++ R +GF +AI ++ Sbjct: 116 YVYIGT---DNYQAGYTAG-LIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIADS- 170 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA--IKEAGLK 237 I+I+ + + ++ + E+ + A + VYA+N G QA +K AG K Sbjct: 171 EIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYN-----GPSQALVVKNAG-K 224 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 GK + D PDI + + +G A++ P M G Sbjct: 225 VGK-VKIVCFDTTPDILQYVKEGVIQATMGQRPYMMG 260 >UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA89_MAGSM Length = 374 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 13/262 (4%) Query: 7 IVSAVSAAMSSMALA--APLTVGFSQVGSESGWRAAE--TNVAKSEAEKRGITLKIADGQ 62 IV A++ +A A P VGF Q + WRAA+ T + +KR + ++D + Sbjct: 75 IVMMTLYALAGLAHAQQPPWRVGFCQDTLDIPWRAAQAMTFSQTLQTDKR-FQVILSDAK 133 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY 122 Q + V +GV + +P PV+ +PV LL R D++ + Sbjct: 134 GNTTQQAIDLEHMVERGVHVLVTSPRDGAVLTPVISNIYRQGVPVVLLSRR--TLDEN-F 190 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 T + D+ G+ +L K +N K ++ +QG AS R GF + + P+++ Sbjct: 191 TTFIAPDDAEIGRQAARYLSKRLNEK-GKILVIQGLGSASTTQQRTVGFIQELSLHPHMQ 249 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 I+ ++ + +MES + + I Y H+D M +GAI A+K AG+ P K Sbjct: 250 IVAQPFANYKKEMAILIMESILAQKLPFDAI---YVHSDAMALGAILALKRAGIDPTKLP 306 Query: 243 LTGSIDGVPDIYKAMMDGEANA 264 + SID +++ GE +A Sbjct: 307 IV-SIDYTRAGRESLRKGEIDA 327 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 8/229 (3%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 K E E G L I D Q Q + + Q V IF+ PV G + L EA ++ Sbjct: 62 KKELEANGDRLVILDAQFNSLKQKNDLSDLILQNVAGIFVNPVNWEGLKGSLLEANRKKV 121 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 P+ ++D + D+ L + TV +DN+ G+L L K VN K +V L +V + I Sbjct: 122 PIIIVDAPVKKADEELIVCTVASDNVRAGELAAQALAK-VNPK-ARLVVLHLSVNKA-CI 178 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 DR GF ++ P +KI+ Q T + VM I ++ V+A ND + Sbjct: 179 DRVAGFKTELEKHPEMKILDVQEAQGTTEGARPVMRDLI---GRYPDLDAVFAINDPNAL 235 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 G I A+ A I+T +DG KA+ G+ +++ P G Sbjct: 236 GVISALDSANKLDQVTIVT--VDGSQAGIKAIQAGKLHSTSAQFPREIG 282 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 13/221 (5%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 I L A +KQ+ QI + Q VDAI IAPV G E LKEA IPV ++D Sbjct: 77 IALDSAMSLKKQKEQI---HYLIEQQVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDT- 132 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 +VK ++ +DN G ++++++ N+V LQ + S + R KGF + Sbjct: 133 -EVKHNKNITYSIVSDNYDAGVQCAKDMMRKLDH--ANIVLLQHSTTRSGYL-RIKGFED 188 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 I++ N K+++ D MESFI+ G +V ND +GA+ A+ Sbjct: 189 TIQSNENYKVVKRMECDGQLEVAMPKMESFIE---EGIEFDVVMCLNDPSAMGAMAALSS 245 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 + KD IDG P+ + +++G+ A+V +P G Sbjct: 246 NNIL--KDKYVYGIDGTPEAKEMVVEGKMAATVAQSPKTFG 284 >UniRef50_C0CSY8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CSY8_9CLOT Length = 376 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 11/216 (5%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKI-----ADGQQKQENQIKAVRSFVAQGV 80 +GFS + + +R A K AE+ T ++ A+ Q Q++ + +F+ QGV Sbjct: 71 IGFSNSYNGNTYRQAMEGYLKEAAEELQKTGEVSEVIFAESNQNNSTQVQQIENFILQGV 130 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 DAI I P AT ++EA DA IP +++ V ++ + D I + + ++ Sbjct: 131 DAIIIDPGSATALNGAIQEASDAGIPCIIINDG-PVSSEAELCYQINFDTIAQMGYLTEY 189 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 + + + GK N++EL+GT G+ +G + ++ P+IK++ D+T SK + + Sbjct: 190 VCEAIGGKG-NIIELRGTAGSEFDNIAHEGVLKVLEKYPDIKVVAEIYTDWTGSKAQSEL 248 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 S + + + V D A+QA + AGL Sbjct: 249 ASVLPTLDKVDGV--VTQGGDSYA--AVQAFQSAGL 280 >UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactobacillus RepID=C0XA52_9LACO Length = 320 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 26/246 (10%) Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPV--LKEAKDAEIPVFLLDRSIDVKDKSLYM- 123 NQ+ + +F+ V IFI PV T + + LK+A +A I + ++D ++ + S Y+ Sbjct: 77 NQVNEINNFIKNEVKVIFINPVDGTSTKLIRALKKAHEAGIKIIVVDSQLE--NSSNYVD 134 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 T+ ++N G L L+ + K N++ LQ SV +DR KGF + IKN N I Sbjct: 135 CTIRSNNYQAGVLCAKELMSK--QKSANILILQQPTAISV-VDRIKGFEDTIKNNKNFHI 191 Query: 184 IR--SQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 + + +G S K ++ ++K GKN + + ND +GA+ AI A K K Sbjct: 192 VDKINTTGQSENSYPK--VQKYLKQ---GKNFDTIMSLNDKTAVGALAAI-NANNKSSK- 244 Query: 242 ILTGSIDGVPDIYKAMMDGEAN--ASVELTPNMAGP-----AFDAL--EKYKKDGTMPEK 292 I SIDG +I K + AN A+V +P G A++ + +K KK+ +P K Sbjct: 245 IAIYSIDGSENIKKMLSTQNANVKATVAQSPLQIGKVAIKVAYELINHQKVKKEIILPVK 304 Query: 293 LTLTKS 298 L +K+ Sbjct: 305 LITSKN 310 >UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6 Tax=Streptococcus RepID=A3CKH1_STRSV Length = 328 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 16/207 (7%) Query: 51 KRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPV--LKEAKDAEIPVF 108 ++G L + D + + Q + + FV + VD I I PV + + L++AK A I + Sbjct: 71 QQGSRLYVRDPELDEGKQSQQIDFFVREKVDVIVINPVKSNSPSIISSLQKAKKAGIKII 130 Query: 109 LLDRSI--DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAID 166 ++D I DVK TT+ +DN G LI ++K + ++E + V A +D Sbjct: 131 VVDAPISQDVKVD----TTIVSDNYQAGVLIAQDMMKRLPSANILLLEHRNAVSA---MD 183 Query: 167 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 R +GF + I+ P+ KII + T + +E M A + G + +V A ND IG Sbjct: 184 RIQGFIDTIEKQPSYKIISQKE---TLGQTEETMPQVKGALDEGLDFNVVMALNDRAAIG 240 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDI 253 A+ AIK GL K I +DG PDI Sbjct: 241 ALAAIKNQGL--DKKISIYGVDGSPDI 265 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 97/216 (44%), Gaps = 13/216 (6%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 ++E EK G L D QI + + QGV+A+F+ PV G P L+ K A I Sbjct: 63 RAEVEKNGDQLITMDPAMDVSKQIDQINDMITQGVEAVFLNPVDWEGVRPGLEALKKANI 122 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVA 164 P+ D +VKD + V +DN GK+ GD LVK NG ++ + Sbjct: 123 PIINFD--TEVKDMNYVTAYVGSDNKNAGKVCGDDLVKRYPNGGKIAILNCPTMNSIN-- 178 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 DR GF AI+ N I+ Q G ++ + +++ + +I + ND Sbjct: 179 -DRIAGFKSAIE-GKNFTIVAEQDGKGDLQTSMKLADDILQSHS---DIVAIMGGNDPTA 233 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 +GA+ A K A K K IL +DG PD K + G Sbjct: 234 LGALAACKSA--KQSK-ILIYGVDGSPDAKKEIASG 266 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/311 (22%), Positives = 133/311 (42%), Gaps = 39/311 (12%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEA----------- 49 M K+ ++ AV +M MA A S+ G S +A +T K E+ Sbjct: 1 MMKKKMLAVAVCVSMCMMAFAGCT----SESGGGSDKKAEQTEGKKEESGKVFMTVSNQQ 56 Query: 50 ---------------EKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWE 94 E G +++ D Q+ + + +++ +AI + P G Sbjct: 57 NEFMVGMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLT 116 Query: 95 PVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVE 154 LKEA DA IPVF++ ++ D L + + D G+L + ++K+ G+ + Sbjct: 117 TGLKEAHDAGIPVFVIHNNVSATD--LVTSLIHVDVRQGGELKMEQVIKDC-GEDAKIAI 173 Query: 155 LQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNIC 214 + GT+G G+ ++ PN++++ +G++ + + E+++ + GK I Sbjct: 174 MTGTLGQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLAS---GKEID 230 Query: 215 MVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMA- 273 + +ND M +G + +K AG + I +D + KA+ GE A++ + Sbjct: 231 AIVCNNDGMALGVVSVLKSAG--KSEQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAEI 288 Query: 274 GPAFDALEKYK 284 AF+ LE K Sbjct: 289 EKAFEMLEDLK 299 >UniRef50_A6FAX6 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FAX6_9GAMM Length = 356 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 29/273 (10%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQ 65 + V V+AA + +P ++ G+ A T S AE+ G L++ ++ Sbjct: 1 MFVPTVNAASHKVVFISP-------GHADQGFWHAVTGTMSSAAEQLGFELEVLYADRQW 53 Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAEIPVFLLDRSIDVKDKSLY 122 ++ S +A+ F+ ++ ++ +L A A IP +L S+ + + +Y Sbjct: 54 AKMVRNAESVIARADKPDFL--ILVNEYQQGARLLALADKASIPTLMLLNSLTQQQRDIY 111 Query: 123 ----------MTTVTADNILEGKLIGDWLV----KEVNGKPCNVVELQGTVGASVAIDRK 168 + ++T DN G + + L +E N ++ L G ++ R Sbjct: 112 GAPREQLKNWLGSLTPDNENAGYEMAESLTHNTRQENNPPSIALLTLAGDNNTPASLARL 171 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 KG A+ + P +K R S +++ + + ++++ G+ + V+A NDD+ +GAI Sbjct: 172 KGLDRALNDFPVLKEQRRISVNWSGDEAYKRTRLWLQS---GQPLGAVWAANDDIGLGAI 228 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 +AI+EAGLKPG D+ ++ D K +M+GE Sbjct: 229 KAIREAGLKPGIDVQVSGLNWSQDAIKHVMNGE 261 >UniRef50_Q92YT4 ABC transporter, periplasmic solute-binding protein n=2 Tax=Alphaproteobacteria RepID=Q92YT4_RHIME Length = 372 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 ++ E G VV L G + A++R G A+K+ PNI+++ +Q D+ KG +M Sbjct: 174 ILFEAMGGEGGVVHLGGIAANNPAVERLNGLKNALKDFPNIELLDAQPADWDTQKGAALM 233 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 SF+ G I V+ ND++ G I+A++ G++ G I+ S DG P+ + +MDG Sbjct: 234 SSFLT--RYGDRIKGVHCANDNIAYGVIEALRAEGIE-GMPIV--SYDGNPEAVQMVMDG 288 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTM-PEKLTLTKSTLYLP 303 + A+V P+ G AL + G+ P + Y P Sbjct: 289 QLLATVFTNPHWGGGITSALAYHAATGSFKPSEEPKEHREFYGP 332 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 17/217 (7%) Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 KS+ IT+ DGQ +Q Q V +F+ QG D I + V T ++++A+ A I Sbjct: 70 KSKETGEKITINAVDGQGQQATQNDQVDTFITQGYDVIAVNMVDRTAASVIIQKAQAAGI 129 Query: 106 PVFLLDRSIDVKDKS----LYMTTVTAD--NILEGKLIGDWLV------KEVNGKPCNVV 153 PV +R +D + LY A+ ++G++ D+ K +GK V+ Sbjct: 130 PVVFFNREPVAEDMAKWDQLYYVGAKAEESGTIQGEVAADYFKANPDADKNKDGKIQYVI 189 Query: 154 ELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKN 212 L+G G A+ R + +A++ A + + S + + R+ G+E M ++I A G Sbjct: 190 -LEGEPGHQDALLRTEYSIKALEAAGFQVDKLASDTALWQRANGQEKMAAWISA--FGDK 246 Query: 213 ICMVYAHNDDMVIGAIQAIKEAG-LKPGKDILTGSID 248 I +V A+NDDM +GAI+A+K AG L GK I +D Sbjct: 247 IELVLANNDDMALGAIEALKAAGYLSDGKFIPVIGVD 283 >UniRef50_C0C038 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C038_9CLOT Length = 391 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 37 WRAAETNVAKSEAE----KRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 92 WR + + AE K LKI + + E+Q ++ + V +G DAI + P T Sbjct: 82 WRQQMERIVEYTAEQEPYKSRCELKIVNCENSPEDQAASIDALVKEGYDAILVDPASETA 141 Query: 93 WEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNV 152 LK A DA I V L D+ ++S Y T+ D + K++ WL + V GK NV Sbjct: 142 LNQALKRATDAGIEVILFDQP--ASEESAYHITI--DAVKAYKVMAKWLAEAVGGKG-NV 196 Query: 153 VELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENN 209 V QG GA+V+ E + P++KI+ ++ + G+ + S I A ++ Sbjct: 197 VLDQGLPGAAVSEQEYNAAKEIFDSYPDMKIVSDFISNYAEADGEAALSSVIAANSD 253 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 117/281 (41%), Gaps = 42/281 (14%) Query: 31 VGSESGWR--AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 88 +G+E WR A ET+VAK Q+ + FV + +DAI +A Sbjct: 59 LGAEIVWRGPAQETDVAK---------------------QVNVINDFVNKKIDAIVVAAT 97 Query: 89 VATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGK 148 A P LK A +A IPV +D I+ + + A N E ++ + GK Sbjct: 98 DANALIPPLKRAHEAGIPVITIDSGINAD----FPISHIATNNKEAAKKAAEVLANIIGK 153 Query: 149 PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAEN 208 V + GA+ +I R+ GF E I N NI ++ Q + +V E+ + A Sbjct: 154 KGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVTENILTAHP 213 Query: 209 NGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVEL 268 N K I +A N+ +GA +A+K G K IL G D AM +G +A + Sbjct: 214 NLKGI---FAANEAGAVGAARALKARG-KTADVILVG-FDAAQTEIDAMKEGIIDALIVQ 268 Query: 269 TPNMAG-----PAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 P M G A ALE G EKL T + PD Sbjct: 269 RPYMMGYEGVKNAVAALE-----GEEVEKLIDTGVVVATPD 304 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 17/243 (6%) Query: 39 AAETNVAKSEAEKRG--ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPV 96 A+ N K + EK G + + IAD + Q +Q V F+ +G DAI + V T + Sbjct: 55 ASLENAIKDKEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVI 114 Query: 97 LKEAKDAEIPVFLLDRSIDVKDKSLYMTT--VTAD----NILEGKLIGD-WLVKEV---- 145 + +AK+A IP+ +R +D +++ T V D LEG+++ D W +E Sbjct: 115 VDKAKEAGIPIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDK 174 Query: 146 NGK-PCNVVELQG-TVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 NG V L+G V I + +K + + S +G++ RS E+M+ + Sbjct: 175 NGDGKLQYVMLEGEQVHQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEW 234 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 I G I +V ++ND+M +GAI+A+ E G+ G + IDG D + ++ GE Sbjct: 235 IG--QYGSQIEVVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGEME 292 Query: 264 ASV 266 +V Sbjct: 293 GTV 295 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 15/252 (5%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRG--ITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 GFSQ S W + A A K G +T D + + Q V++ + + DA+ Sbjct: 44 GFSQ----SFWVSVHQG-ADDAAAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVA 98 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 IAP+ P ++ AK A IP+F D + + ++ +TV N GK+ + L+ Sbjct: 99 IAPLDEAALTPAVQSAKSASIPLFAFDTAFETNADAI-TSTVKTSNREVGKVAAENLIAL 157 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNAPNIKII-RSQSGDFTRSKGKEVMES 202 +NGK V A+ + +R+ GF + + KNAP+++++ Q + ++K +++ + Sbjct: 158 LNGKGKYAVIAHSQTDAT-STERRDGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASA 216 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++A ++ ++A N+ V+GA + E+ LK G +L +D + + DG Sbjct: 217 ILQAN---PDLDAIFATNEATVVGAATPV-ESALKSGHKVLLVGVDSGKAQQQYIRDGVI 272 Query: 263 NASVELTPNMAG 274 + SV P G Sbjct: 273 SGSVSQNPYQIG 284 >UniRef50_Q67RD5 Ribose ABC transporter ATP-binding protein n=7 Tax=Bacteria RepID=Q67RD5_SYMTH Length = 429 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 151 NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNG 210 ++ + G +GA R +GF EA+ I ++ SQ DF R+KG VME+ ++A Sbjct: 283 EILGIAGLMGAG-RTHRGQGFHEAVDGVQGIDVVASQPADFDRAKGLTVMENILQAH--- 338 Query: 211 KNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 +I V+AHND+M +GA++AI+ AG I D D KA+ +G A+V P Sbjct: 339 PDIVAVFAHNDEMALGALEAIEAAG--KADQIKVVGFDATDDAVKAVQEGRMAATVAQKP 396 Query: 271 NMAG-----PAFDALEKYKKDGTMPEKLTLT 296 G A L K D +P L L Sbjct: 397 KEMGRLGVETALKHLNGEKVDEYIPVPLELV 427 >UniRef50_A5ZT86 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT86_9FIRM Length = 318 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 115/239 (48%), Gaps = 17/239 (7%) Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 ++ + I + D E QI+ + + + G+D + ++P + VL EA +IPV Sbjct: 65 SQDKKINVIFRDAAGNPEKQIQDIETLMEYGIDILIVSPDGSDSLSSVLSEAF-QKIPVI 123 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 L +D Y + +D+ G+L G++++ + K +V QG + V+ R Sbjct: 124 LTGVGAGTED---YTCLIKSDDQKIGRLAGEYILNNLYEKNKKIVVFQGVEESPVSKQRL 180 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 KGF ++++ + I GD+ R + + M+ ++ + ++ +V+A NDDM GA Sbjct: 181 KGFQDSVQGTIPEEDITYYCGDWLRDRAELRMKDYLISHDSAD---IVFAFNDDMAYGAY 237 Query: 229 QAIKEAGLKP-----GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEK 282 QA ++ ++ G D G G+ + K ++D A+++ TP+ G +++ K Sbjct: 238 QACQQYRIEGKVHLIGVDGFEGESAGLSLVDKGVLD----ATIQ-TPDFGGLSYEIARK 291 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 128/302 (42%), Gaps = 25/302 (8%) Query: 1 MWKRLLIVSAVSAAMSSMALAA------------PLTVGFSQVGSESGWRAAETNVAKSE 48 M KR+ +V +++ M M A L + GS + AA N + Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 + I + + DG Q A+++ ++ G D I I+PV + + EA DA I V Sbjct: 61 EKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVC 120 Query: 109 LLDRSIDVKDKS--LYMTTVTADNILE---GKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 L I D +Y TV +E G+ D + E + + ++GT G S Sbjct: 121 ALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMD-IAAEALDRSGKIAIIEGTPGMSD 179 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 RKKG E K P+I+++ G++ K M++ I++ + +V H+D+M Sbjct: 180 TEGRKKGIDEENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQS---NPEVELVICHSDNM 236 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 +GA +A+++A + I+ I G D + GE ++ P A+ ALE Sbjct: 237 AVGAAKALEDADMTDKVKIV--GIGGSKDALDLIKKGEIYGTIMYVPET--EAYTALEAT 292 Query: 284 KK 285 K Sbjct: 293 AK 294 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 127/266 (47%), Gaps = 17/266 (6%) Query: 1 MWKRLLIVSAVSAAMSSMA----LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 M K+ + S ++A + ++A LA+ + ++ + A A ++A++ G Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDT 60 Query: 57 KIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 +A DG ++NQ+ + + +A+ A+ + A L+ K A IP FL DR I Sbjct: 61 LVASHDGDVNKQNQL--IETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREI 118 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 + + +T + ++N +L G+ E+ G VEL G + A R +GF + Sbjct: 119 N--KTGIAVTQIVSNNFQGAQLAGEKFA-ELMGDGGEYVELLGPESDTNAQVRSEGFHDI 175 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + N P K++ QS ++++++ MES ++A NI V ND M +GA A++ A Sbjct: 176 LDNFPEFKMVARQSANWSQTEAFSRMESILQAN---PNIKGVITGNDSMALGAEAALQAA 232 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDG 260 G KD+ DG+ + +++ G Sbjct: 233 GR---KDVFIVGFDGLDYVRDSIIKG 255 >UniRef50_B9J8H1 Fructose ABC transporter n=23 Tax=Bacteria RepID=B9J8H1_AGRRK Length = 341 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 126/278 (45%), Gaps = 53/278 (19%) Query: 45 AKSEAEKRGITLKIADGQ--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 102 A ++A++ G+TLK G+ E+Q+ A+ S +A G I I G +K+A+D Sbjct: 49 ATAKAKELGVTLKSYAGKIDGDSESQVAAIESCIASGAKGILITASDTKGIVSSVKKARD 108 Query: 103 AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGAS 162 A + V LD ++ T DN+L GKLIG+W K + K Sbjct: 109 AGLLVIALDTPLE--PADAADATFATDNLLAGKLIGEWANKTLGDK-------------- 152 Query: 163 VAIDRKKGFAEAIKNAPNIKIIRSQS---------------GDFTRSK------------ 195 A D K GF + + P++ ++R Q GD T + Sbjct: 153 -AKDAKIGFLDLTPSQPSVDVLRDQGFMIGFGIDPKDPNKIGDETDPRIVGHDVTNGNEE 211 Query: 196 -GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 G++ ME+ ++ ++ +I +++ N+ +GA QA+K GL+ K +L S+DG Sbjct: 212 GGRKAMENLLQKDS---SINVIHTINEPAAVGAYQALKAVGLE--KQVLIVSVDGGCPGV 266 Query: 255 KAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPE 291 K++ +G A+ + P MA +A++K+ G P+ Sbjct: 267 KSVKEGVIGATSQQYPLMMAALGVEAIKKFADTGEKPK 304 >UniRef50_C0CRA5 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CRA5_9FIRM Length = 382 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 21/222 (9%) Query: 26 VGFSQVGSESGWR---AAETNVAKSEAEKRGI----TLKIADGQQKQENQIKAVRSFVAQ 78 VGFS + + WR AE +K G+ T+ AD Q + QI +R + Sbjct: 74 VGFSNYSAGNSWRQQMEAEFKEEAEALKKAGVISDYTMLNADNDQSK--QISDIRDLITM 131 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G DAI + + A G VL+EA++ I V D ++ + + V + GKL G Sbjct: 132 GCDAIVVTAITADGLNDVLEEAEEEGIKVVNCD---NLSSSTKLTSKVMVSDYDFGKLCG 188 Query: 139 DWLVKEV--NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSK 195 +WL +++ GK V+EL GT G S +R G + + A P+ +II S + D+ + Sbjct: 189 EWLGEQLPDGGK---VIELNGTAGTSTDTNRAAGMEDGLAEASPDSEIIASVNADWDYAT 245 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 K +E + N I V + M A++A + AG K Sbjct: 246 AKTAVEELL---NTYPEIDGVLSQGGAMTQAAMEAFEAAGRK 284 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 11/236 (4%) Query: 37 WRAAETNVAKSEAE-KRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEP 95 W+A ++ ++ + K +T + + + + QI + + +A+ AI A + + P Sbjct: 42 WQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAALAKKPQAIGFAALDSQAAIP 101 Query: 96 VLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL 155 +LK+A+ A+IPV D + D + +TT T DN L D + E+ GK V + Sbjct: 102 LLKKAQAAKIPVVAFDSGV---DSDIPVTTTTTDNKAAAALAADKMA-EMIGKSGEVALV 157 Query: 156 QGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNIC 214 + +DR+ GF IK+A PNIKI+ Q G + K E+ +S ++A N K I Sbjct: 158 VHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYGGGDQLKSTEITKSILQASPNLKGI- 216 Query: 215 MVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 + N+ IG + +KE + GK ++ G D A+MDG ++ P Sbjct: 217 --FGANEGSAIGVVNGVKEMK-RSGKVVIIG-YDSGKQQKNAIMDGSMAGAITQNP 268 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 7/207 (3%) Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 Q+ +++F+ QGVD + A A V ++A D I V +D D + +++ + Sbjct: 91 QVNLLQNFITQGVDGLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPV--FA 148 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 DN+ + ++LV+++ V + G + R +GF +K P +K++ Q Sbjct: 149 TDNVAAAERATEYLVEQLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQ 208 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 S + ++ +V E + A ++ +YA N+ V+GA +A++ AG K G+ I+ G Sbjct: 209 SSESNYNRALQVTEDILTAH---PDLDAIYAANEPGVLGAAEAVRSAG-KAGEIIIVG-W 263 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAG 274 D PD KA+ +G +A + P G Sbjct: 264 DTAPDELKAVREGVVSALIAQNPFRMG 290 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 15/250 (6%) Query: 8 VSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQEN 67 V+ SA+ + A P+ V S + + A N K A+ + I LK++ Q Sbjct: 12 VALASASFNLYAKDEPV-VCASLLTQSHPFYIALGNGLKEGAKLQHINLKVSVANQDLAK 70 Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 QI + + + VDAI I+PV + G LK+A+ A IPV +D + S ++ + Sbjct: 71 QINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIG---AENSKIVSHIA 127 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 DN G + G VK++ GK V + G S R +GF +A+ + +IKI+ Q Sbjct: 128 TDNYGGGVVAGKLAVKQLGGK--GQVVMLSYPGISSVEARLQGFRDAVADT-DIKIVAVQ 184 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 G TR +E M S I + +++A DDM+IGA A+ + + K ++ G Sbjct: 185 PGK-TR---EESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAVTK---QKSKAVVIG-F 236 Query: 248 DGVPDIYKAM 257 DG+P+ KA+ Sbjct: 237 DGMPEGIKAV 246 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 48/270 (17%) Query: 45 AKSEAEKRGITLKI---ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 A+++A + GI L + D + Q Q+ V S VA + P + P + + Sbjct: 53 AQAKANELGIDLTVLDAGDDAEVQAAQLDDVSSGVA------VVNPADSEALAPAVSQLN 106 Query: 102 DAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 + IP +DR+I D + + + N EG ++ + V+ L+G G+ Sbjct: 107 EKGIPAITVDRTITGADVAALIDS----NNTEGGAAAASVLAKAIRAQGEVIVLRGIEGS 162 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 S + +R +GF +A+ P ++I+ +++ DF R ++++ + + ++ ++A ND Sbjct: 163 SSSAERYEGFTQAMAEHPRVRIVAAEAADFDRDTARDLVTDLLA---DHPDVAGIFAEND 219 Query: 222 DMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA------------------------- 256 +M +GA+ A+ E + GKD+ DG + +A Sbjct: 220 EMALGAVDALGE---RAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQA 276 Query: 257 --MMDGEANASVELTPNMAGPAFDALEKYK 284 ++DGEA SV TP M D +EKY+ Sbjct: 277 GKLLDGEAAESVH-TPVMV-VTRDNIEKYR 304 >UniRef50_C8NCI4 Ribose ABC superfamily ATP binding cassette transporter, periplasmic ribose-binding protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI4_9GAMM Length = 184 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 10/138 (7%) Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 + D + ++ P + + Q T S A +R GFA+A + A + KI+ SQ DF RSKG Sbjct: 28 MSDEMSAAMHNAPDDPIAAQFT---SAARERGAGFAKAAQ-AHDFKILASQPADFDRSKG 83 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 VME+ + A+ + V+A ND+M +GA++AI+ AG KD++ DG D KA Sbjct: 84 LNVMENLLTAQ---PEVQGVFAQNDEMALGALRAIQAAG---KKDLVLVGFDGTDDGVKA 137 Query: 257 MMDGEANASVELTPNMAG 274 + G+ A++ P G Sbjct: 138 VKGGKMAATIAQQPEKIG 155 >UniRef50_Q1AZ05 Periplasmic sugar binding protein-like protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ05_RUBXD Length = 365 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 14/215 (6%) Query: 22 APLTVGFSQVGSESGWRAA---ETNVAKSEAEKRGIT--LKIADGQQKQENQIKAVRSFV 76 AP T+G S S WR + E + G+T L I + QI+ +R+ + Sbjct: 42 APYTIGVSNGFISSEWRTQMIQDLERVNKEYMEEGLTEELVIESADVDVQGQIQQMRNLI 101 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 QGVDAI + P TG V+KEA DA I V +D+ I + V D + Sbjct: 102 NQGVDAIIVNPNSVTGLNQVIKEASDAGIVVISVDQEIPAEGA----INVVIDQAEWARR 157 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 +WLV+++ G+ +VV + G G R E P I++I + ++ ++ G Sbjct: 158 SAEWLVEQLGGE-GDVVVINGIAGHPANEARYDAVKEVFSRNPGIEVIAEANANWDQATG 216 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 ++ M + + +E I V+ D M G +QAI Sbjct: 217 QQKMSNILASET---GIDGVWTQ-DGMARGVLQAI 247 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ 62 KR++I + +S A A + V + S + A K EA K L++ Sbjct: 2 KRMIIGTTAMFLAASSAYAGDIGV---TIASNDTFLAVMVQAMKDEAAKTNQPLQVEFAD 58 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD---- 118 Q+ +++F+A VDAI + V +T + K A DA IP+ ++ + D Sbjct: 59 ADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQLGP 118 Query: 119 KSLYMTTVTAD-NILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 K+ ++ + D L+ K + L +E + ++ +QG + A R K + + Sbjct: 119 KAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDVVAT 178 Query: 178 --APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 +KII Q+ + K +++M ++I A G V ++NDDM +GA+ ++K AG Sbjct: 179 PECNFMKIIDEQTAQWDPVKAQDLMTNWITA---GHKPVAVLSNNDDMALGAVNSLKAAG 235 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 + KD++ ID + + G+ +A+V Sbjct: 236 WEM-KDVIVAGIDATKEAMHYVKTGDLDATV 265 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 13/208 (6%) Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 G+ + + Q+ + +F+A VD I + G EPVLK+A+ A I Sbjct: 59 GVKVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-----AV 113 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 TV +DN + G ++ +++ G+ NVV + G +V+ R G Sbjct: 114 VAVDVGAVGADATVMSDNAMAGAESCKFMAQQLGGR-GNVVIVNGPPVTAVSA-RVAGCK 171 Query: 173 EAIKNAPNIKIIR-SQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 + + N P IK++ +Q +R G E M + + A K I V+A ND IGA A+ Sbjct: 172 KVLGNYPGIKLLSDNQDAHGSRDGGMETMANLLTAH---KKIDAVFAINDPTGIGAELAV 228 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMD 259 K+AG K L ++DG PD KA+ D Sbjct: 229 KQAGRSDVK--LIAAVDGAPDAEKALKD 254 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 12/208 (5%) Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 AK A G T D Q NQ + +F+ QGV+ I I+ V G +P ++ AK A Sbjct: 61 AKEAAASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAG 120 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 I V +D D ++ MT D + G+ +L +++ GK NV+ + GT ++ Sbjct: 121 IIVIAVDTPAKSAD-AVVMT----DAVQAGEKSCQYLFEQMGGK-GNVLLVDGTPLQTIR 174 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 DR G +K P IK++ Q+ R+ G V + A + + I + ND Sbjct: 175 -DRITGCNNVVKKFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGI---FGMNDPSA 230 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPD 252 +GA+ A+++A K G +TG +DG P+ Sbjct: 231 LGAVLAVQQAH-KAGTVKVTG-VDGSPE 256 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 8/219 (3%) Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 IT + + ++ QI V+ F+ VD I +AP+ A +KEA A +PV + D Sbjct: 174 ITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVIFDSG 233 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 ++ D +++ V DN GKL G+ + + K +V+ L+ G+ R++GF Sbjct: 234 LNT-DPGDFVSYVATDNFEGGKLAGEAMANALGEKGGDVILLRYEQGSESTHQREEGFLY 292 Query: 174 AIKNAPNIKIIRSQ--SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 +I NI+++ S +G T S + + + IC V + GA++A+ Sbjct: 293 SIAEYSNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVC---EPTAEGALRAL 349 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 +E L ++T D + +++ GE NA V P Sbjct: 350 RERKLAGKVKLVT--FDSSDSLRESLSAGEVNAIVLQDP 386 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 422 e-117 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 310 4e-83 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 292 1e-77 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 291 2e-77 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 287 3e-76 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 282 1e-74 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 281 2e-74 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 279 8e-74 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 273 6e-72 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 270 4e-71 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 267 4e-70 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 267 4e-70 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 267 4e-70 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 264 3e-69 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 264 4e-69 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 264 4e-69 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 263 5e-69 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 262 1e-68 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 262 1e-68 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 259 2e-67 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 258 2e-67 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 256 8e-67 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 255 1e-66 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 255 1e-66 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 255 2e-66 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 255 2e-66 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 252 9e-66 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 251 3e-65 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 248 1e-64 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 248 2e-64 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 247 3e-64 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 247 5e-64 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 246 6e-64 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 246 7e-64 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 245 1e-63 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 245 1e-63 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 245 2e-63 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 244 4e-63 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 243 4e-63 UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostri... 243 4e-63 UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coproco... 243 4e-63 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 243 7e-63 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 242 1e-62 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 242 1e-62 UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding... 241 2e-62 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 240 7e-62 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 238 1e-61 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 238 2e-61 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 238 2e-61 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 238 3e-61 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 237 3e-61 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 237 5e-61 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 236 7e-61 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 235 1e-60 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 235 2e-60 UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostri... 235 2e-60 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 234 3e-60 UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ... 233 5e-60 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 233 5e-60 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 233 6e-60 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 233 6e-60 UniRef50_C0CVX1 Putative uncharacterized protein n=1 Tax=Clostri... 233 8e-60 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 232 1e-59 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 232 1e-59 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 231 2e-59 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 231 2e-59 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 231 3e-59 UniRef50_C7GGA9 ABC transporter periplasmic-binding protein YtfQ... 231 3e-59 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 230 5e-59 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 230 6e-59 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 230 7e-59 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 229 9e-59 UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional... 228 1e-58 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 228 2e-58 UniRef50_C2HAH9 ABC superfamily ATP binding cassette transporter... 228 2e-58 UniRef50_B6FKZ7 Putative uncharacterized protein n=1 Tax=Clostri... 225 2e-57 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 225 2e-57 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 225 2e-57 UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 224 3e-57 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 224 3e-57 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 223 5e-57 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 223 8e-57 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 223 9e-57 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 223 9e-57 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 222 2e-56 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 222 2e-56 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 221 3e-56 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 220 4e-56 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 220 7e-56 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 220 8e-56 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 219 1e-55 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 219 1e-55 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 218 2e-55 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 218 2e-55 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 218 3e-55 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 218 3e-55 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 218 3e-55 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 217 4e-55 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 217 4e-55 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 217 5e-55 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 217 5e-55 UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin... 217 5e-55 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 216 9e-55 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 216 1e-54 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 215 2e-54 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 214 3e-54 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 214 3e-54 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 214 3e-54 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 214 3e-54 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 213 5e-54 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 213 6e-54 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 213 8e-54 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 213 9e-54 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 212 1e-53 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 212 1e-53 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 211 3e-53 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 210 6e-53 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 208 1e-52 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 208 3e-52 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 207 4e-52 UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_... 207 5e-52 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 207 6e-52 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 206 7e-52 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 206 1e-51 UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional... 205 1e-51 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 205 1e-51 UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 T... 205 2e-51 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 205 2e-51 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 204 3e-51 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 204 4e-51 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 203 5e-51 UniRef50_A8RMQ4 Putative uncharacterized protein n=1 Tax=Clostri... 203 6e-51 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 203 7e-51 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 203 7e-51 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 203 8e-51 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 203 8e-51 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 203 8e-51 UniRef50_C0BVF8 Putative uncharacterized protein n=1 Tax=Bifidob... 203 9e-51 UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 201 2e-50 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 201 2e-50 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 201 2e-50 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 201 3e-50 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 201 3e-50 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 201 3e-50 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 200 4e-50 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 200 4e-50 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 200 4e-50 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 200 5e-50 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 200 6e-50 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 200 7e-50 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 200 7e-50 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 200 8e-50 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 199 9e-50 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 199 1e-49 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 199 1e-49 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 199 1e-49 UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional... 199 1e-49 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 199 1e-49 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 199 1e-49 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 198 1e-49 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 198 2e-49 UniRef50_B1G538 ABC-type sugar transport system periplasmic comp... 198 2e-49 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 198 2e-49 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 198 2e-49 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 198 2e-49 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 198 3e-49 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 197 3e-49 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 197 4e-49 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 197 5e-49 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 196 6e-49 UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri... 196 6e-49 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 196 7e-49 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 196 8e-49 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 195 1e-48 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 195 1e-48 UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali... 195 2e-48 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 195 2e-48 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 195 3e-48 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 194 3e-48 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 194 3e-48 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 194 3e-48 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 194 3e-48 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 194 3e-48 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 194 4e-48 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 194 4e-48 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 194 4e-48 UniRef50_Q2RKM1 ABC transporter substrate-binding protein n=3 Ta... 194 4e-48 UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette... 193 5e-48 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 193 6e-48 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 193 6e-48 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 193 8e-48 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 193 8e-48 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 193 8e-48 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 193 9e-48 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 193 9e-48 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 192 1e-47 UniRef50_Q89KM1 ABC transporter substrate-binding protein n=1 Ta... 192 1e-47 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 192 1e-47 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 192 1e-47 UniRef50_C8XIB8 Periplasmic binding protein/LacI transcriptional... 191 2e-47 UniRef50_D0B1Z2 Periplasmic binding protein/LacI transcriptional... 191 2e-47 UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional... 191 2e-47 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 191 3e-47 UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostri... 191 3e-47 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 191 4e-47 UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 T... 190 5e-47 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 190 6e-47 UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional... 190 6e-47 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 190 6e-47 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 190 6e-47 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 190 7e-47 UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=... 190 7e-47 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 190 8e-47 UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional... 189 9e-47 UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta... 189 1e-46 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 188 2e-46 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 188 2e-46 UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ... 188 2e-46 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 188 2e-46 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 188 2e-46 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 188 2e-46 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 188 3e-46 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 187 4e-46 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 187 4e-46 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 187 5e-46 UniRef50_C7IGF5 ABC-type sugar transport system periplasmic comp... 186 6e-46 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 186 6e-46 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 186 7e-46 UniRef50_Q1M6L8 Putative substrate-binding component of ABC tran... 186 8e-46 UniRef50_A6M0Q8 Periplasmic binding protein/LacI transcriptional... 185 1e-45 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 185 2e-45 UniRef50_A1WMZ2 Periplasmic binding protein/LacI transcriptional... 185 2e-45 Sequences not found previously or not previously below threshold: UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 203 7e-51 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 422 bits (1085), Expect = e-117, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD Sbjct: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS Sbjct: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN Sbjct: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK Sbjct: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL Sbjct: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 Query: 301 YLPDTAKEELEKKKNMGY 318 YLPDTAKEELEKKKNMGY Sbjct: 301 YLPDTAKEELEKKKNMGY 318 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 161/295 (54%), Positives = 210/295 (71%), Gaps = 5/295 (1%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 P+ +GFSQVG+ES WR A T KS A GI LK +D QQKQENQIKA+RSF+AQ VD Sbjct: 30 KPIVLGFSQVGAESEWRTANTESIKSAARDAGIELKFSDAQQKQENQIKAIRSFIAQRVD 89 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I +PVV +GWEPVL+EAK A+IPV L DR+++ KD SLY+T + +D + EG+ G WL Sbjct: 90 VIAFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTKDTSLYVTFMGSDFVEEGRKAGRWL 149 Query: 142 VKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 V+++ N+VELQGTVG++ AIDRKKGF E +K P KIIRSQ+GDFTR+KGKEV Sbjct: 150 VEKMKDAKGDVNIVELQGTVGSAPAIDRKKGFEEVVKADPKFKIIRSQTGDFTRAKGKEV 209 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 ME+F+KA G+ I ++YAHNDDM IGAIQAI+EAGLKPGKDI SID V ++AMM Sbjct: 210 MEAFLKA--EGRKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMA 267 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 G+ N +VE +P + A++ K T+P K +T+ ++ +TA +E K+K Sbjct: 268 GKLNVTVECSPLLGPQLMAAVKDIKAGKTVP-KRIVTEEGIFPMETAAQEFPKRK 321 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 153/310 (49%), Positives = 204/310 (65%), Gaps = 5/310 (1%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 V+A+++S A +T+GFSQVG+ES WR A T K+ A+ GI LK +D QQKQE Sbjct: 15 AALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQE 74 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 NQIKA+RSF+AQ VD I +PVV +GWEPVL EAK+A+IPV L DRSIDVKD SLY+T + Sbjct: 75 NQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVKDTSLYVTMI 134 Query: 127 TADNILEGKLIGDWLVKEVNGK--PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 +D + EG+ G WL + + P N+ ELQGTVG++ A DR G E IKN P KII Sbjct: 135 GSDFLEEGRRAGRWLEERYKNEAGPINIAELQGTVGSAPANDRHAGLMEVIKNDPKFKII 194 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 SQSGDFT + GK+VME+F A+ GK I +VYAHNDDM +GAIQA++EAG+KPGKD+ Sbjct: 195 ASQSGDFTLAGGKQVMEAF--AKTYGKQINVVYAHNDDMALGAIQAMEEAGIKPGKDVSV 252 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 S D ++AM+ G+ N VE +P + A++ +P K +T T++ Sbjct: 253 VSFDATKGGFEAMIAGKINVDVECSPLLGPQLMTAVKDVVAGKQLP-KRIVTNETVFPMS 311 Query: 305 TAKEELEKKK 314 A + L ++K Sbjct: 312 VAAQILPQRK 321 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 186/320 (58%), Gaps = 12/320 (3%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLT------VGFSQVGSESGWRAAETNVAKSEAEKRG- 53 M K L+ + V+ A+S+ +L+ + VGFSQ + WR AETN K EA K Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 54 -ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 I D Q + Q + +A+ VD IF+AP G P L+ A+ A+IP+FL+DR Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + +++ + +D I +G+ +G+WL K +GK ++VEL GT G+SVAIDR KGF Sbjct: 121 EAAGRPGEHFVSFLGSDFIAQGRRVGEWLAKATDGK-ASIVELTGTAGSSVAIDRAKGFR 179 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 AI PN+KII +Q+ DF+R+ VME+ I+A G +I VYAHND+M +GAIQA+K Sbjct: 180 NAIATYPNMKIIATQTADFSRAAAVRVMENIIQA--KGSDITAVYAHNDEMALGAIQALK 237 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 AG+KPGKD++ GSIDG +A++ GE SVE P F +E+Y +P + Sbjct: 238 SAGMKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNPRFGPLVFATMEEYFAGKKIPPR 297 Query: 293 LTLTKSTLYLPDTAKEELEK 312 + L K L+ AK+ + + Sbjct: 298 IIL-KDRLFDVTNAKDFVNE 316 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 140/291 (48%), Positives = 185/291 (63%), Gaps = 5/291 (1%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + VGFSQ G+ES WR A + ++EAEKR + L ADGQ NQ+ AV F+ +GVD Sbjct: 45 EIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNNQVNAVNGFITKGVDV 104 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I IAP + GW+P LKEAK A IPV L R +D ++ LY T + AD + EG+ G+WL Sbjct: 105 IVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEE-DLYETVMVADFVWEGRRAGEWLA 163 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 K+ NGK ++EL GT A VA+ RK GFAEAI P++KII SQSGDFTR+KGK VME+ Sbjct: 164 KQTNGK-ARIIELVGTPAADVAVMRKTGFAEAIAKHPDMKIIASQSGDFTRTKGKTVMET 222 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 + A I VYAHNDDM +GAIQAI+ AGLKPG+DIL SID V ++AMM+G+ Sbjct: 223 LLSAHKG--EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVKPAFEAMMEGKL 280 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 NA+VE P FD ++K + +P K T+ ++ + A + + Sbjct: 281 NATVECNPMHGPLLFDTIDKIVRGEKVP-KRTIVPGQIFEREQAAAAIGSR 330 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 141/296 (47%), Positives = 181/296 (61%), Gaps = 9/296 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +T+GFSQVG+ES WR A T KS EK G L AD QQKQENQIKAVR F++Q VD Sbjct: 50 ITIGFSQVGAESDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDV 109 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I IAPV TGWE VL EAKDA+IPV ++DR I V D SL+ V +D EG +WLV Sbjct: 110 IAIAPVTETGWETVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLV 169 Query: 143 KEVNGKP----CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + K NVV LQGT+G+S I R KGF + IK N I+ Q+G+FT++KG+E Sbjct: 170 NYMKEKGKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQE 229 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 VMESF+K N +I +V A ND+M GAI A+K AG PGKD+ S D V +K+M+ Sbjct: 230 VMESFLKQYN---DIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMI 286 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 G+ N SVE P + GP L K + EK+ +Y + A++EL ++ Sbjct: 287 AGDMNVSVECNP-LHGPRVAELAKKLMNDEKVEKIQYVDEKVYPAEIAEKELPNRQ 341 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 110/290 (37%), Positives = 167/290 (57%), Gaps = 4/290 (1%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + +G+SQ+ + +R AETN K EAEKRG L + D Q Q+ V +AQ +D Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + ++P G E L+ AK+ +PV L+DR + Y+T + D + EG+ G+WL Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVTYIATDFVWEGQAAGEWL 206 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + G CN++EL GTVG+S A DR GFA + +KII SQ+G+F RS+G++VME Sbjct: 207 KDKTGG-TCNIIELTGTVGSSSAQDRATGFAGVVDQNEGMKIIASQTGNFERSEGQKVME 265 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + ++A G + V+ HND M +GA+QAIK AG KP +DIL IDG D +K+++ GE Sbjct: 266 NLLQAH--GGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGE 323 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 +A+V +P FD +EK +PE+ + + + A+E +E Sbjct: 324 MSATVVSSPMYGPITFDTVEKILAGQEVPEQTIM-EGVVVDAGNAQENME 372 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 149/304 (49%), Positives = 206/304 (67%), Gaps = 5/304 (1%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIADGQQKQENQIKA 71 A S+ ++ +GF+QVG+ESGWR AET+ KS LK +DGQQKQENQIKA Sbjct: 34 AKTSAANSSSKKIIGFAQVGAESGWRTAETDSIKSIPTLDPNFDLKFSDGQQKQENQIKA 93 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 +RSF+AQ VD I + PVV TGW+ VLKEAKDA+IPV ++DR + V D SLY + +D + Sbjct: 94 IRSFIAQKVDLIALDPVVETGWDTVLKEAKDAKIPVVIVDRKVTVSDDSLYKCFLGSDMV 153 Query: 132 LEGKLIGDWLVKEVNGKPC-NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 EGK L+ + N+ ELQGTVG++ + R++GF +AIK+ PN KII+SQ+GD Sbjct: 154 AEGKKAAQILIDQFGKDATLNIAELQGTVGSTAMVGRQQGFNDAIKDCPNYKIIKSQTGD 213 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 FTR+KGKEVME+F+K+ +G I ++++HNDDM +GAIQAI+E G KPGKDI S+DG+ Sbjct: 214 FTRAKGKEVMEAFLKS--DGDKINVLWSHNDDMAMGAIQAIEEYGKKPGKDIFIVSVDGI 271 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 DI++AM+DG+ANA+VE P + + + K DG E+ +K + +L A EL Sbjct: 272 KDIFQAMVDGKANATVECNPLLGPQLLE-VAKNILDGKEVERTINSKESQFLQKDAAAEL 330 Query: 311 EKKK 314 +K Sbjct: 331 PNRK 334 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 185/292 (63%), Gaps = 5/292 (1%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 L VGF+Q+G+ES WR A T + A + G+ L ++D QQ+QENQIKA+RSF+AQGVD Sbjct: 46 ELVVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQQQENQIKAIRSFIAQGVDV 105 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I ++PVV TGW+ V E K A IP+ LLDR+ +V D LY + +D + EG+ + Sbjct: 106 IGVSPVVETGWDEVFAEVKQAGIPLILLDRNANVPD-DLYSVRIGSDFVEEGRRACGEMA 164 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 + ++G+ +V L+GT G++ I R GF E +++ P + II SQSGDF R++GKE M + Sbjct: 165 RLLDGQGA-IVVLEGTQGSAPMIGRGTGFQECLQSYPALHIIDSQSGDFIRARGKEEMAA 223 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++ G +I V+A NDDM +GAI+AI+E GL+PG DI SID V ++AM+DG+ Sbjct: 224 LLQKH--GNSIDGVFAQNDDMALGAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKL 281 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 NA++E P + GP F A +G EK +Y DTA +EL K++ Sbjct: 282 NATIECNP-LLGPLFFATALNLANGIPVEKWIKPDEGIYRQDTAAQELSKRE 332 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 118/300 (39%), Positives = 175/300 (58%), Gaps = 7/300 (2%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV 76 A LTVGF+Q GSES WRAA + KSEAEK+GI L+ D Q +NQ+KA+RSF+ Sbjct: 15 CTVSQAKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFVDAQSNVDNQMKALRSFI 74 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 A VDAI +AP+V +GWE VL++AK A IPV ++DR I V D SLY T + +D EG++ Sbjct: 75 ADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKI-VADPSLYATFIGSDFFKEGQM 133 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA--PNIKIIRSQSGDFTRS 194 +W++ + K +VELQG G+S A +R++ FA + +I+ + +F R Sbjct: 134 AAEWILAHADQKR-KIVELQGEPGSSAANERQRAFASTMATHTSDGFRIVARKVANFRRD 192 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 +G++ M + G +I +V+AHNDDM +GAI+AI+ G PG+DI+ SID + Sbjct: 193 QGRQAMAELLTTH--GSDIEIVFAHNDDMALGAIEAIEAVGRSPGRDIMVVSIDAIKTAV 250 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 +A+ G+ N +VE P +A+ + GT K T K + A + L ++ Sbjct: 251 EAVASGKLNCTVECNPLFGPKVIEAVVRLTSGGT-VMKETFNKDIVIDASNAAQLLPSRQ 309 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 10/294 (3%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAV 72 + + A P+ +GF+ + + A +N + EA+K G+ + I +G Q+ V Sbjct: 34 LSNTGTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQV 93 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + Q V+AI + P + +++A A IPV LDRS+ K + ++++ Sbjct: 94 EDLIQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVT---KGNVACFIASNSVE 150 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 GK+ D L+K + GK VVELQG +G S DR+KGF E I AP I+++ Q+ +F Sbjct: 151 AGKMAADELIKALGGK-GQVVELQGVIGTSAEADREKGFDEEIGKAPGIRVVARQTANFD 209 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 RS+ VM++ ++A NI V+A ND+M +GA++AI+EAG +I IDG + Sbjct: 210 RSQALNVMQNILQAH---PNIQGVFAQNDEMALGALKAIQEAGKH---NIKIVGIDGEKE 263 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 + G A + P G +G K + L +T Sbjct: 264 AVNDVHKGLLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQVNSPLHLVEKNTP 317 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 159/311 (51%), Gaps = 13/311 (4%) Query: 5 LLIVSAVSAAMSSMALAA-PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLKIADG 61 L + A M LA + +GFSQ WR A K A + + L + DG Sbjct: 13 LAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDG 72 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 Q+ V S +AQG+ + I+P+ PV+KEA DA I V LDR ++ Sbjct: 73 NNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP---- 128 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 V +N+ G G++L K++NGK N++ELQGT GAS IDR KGFAEAI P++ Sbjct: 129 VTVHVGGENLPLGVGAGEFLAKKLNGK-GNIIELQGTAGASATIDRNKGFAEAIAKHPDM 187 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 K++ SQ+ D+TR K + ME ++ G+ I VYAHND+M +GAIQ ++ AG + Sbjct: 188 KVVASQNCDYTRDKAVKFMEDMVQRFGPGQ-IQAVYAHNDEMALGAIQVLEAAGRL--NE 244 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 + IDG ++A+ G+ A+ + P +A + K K +PE +TL + Sbjct: 245 VAVVGIDGQETAFEAVKQGKLAATF-VYPFVAPEGIETAYKVAKGEEVPETITL-PTVSV 302 Query: 302 LPDTAKEELEK 312 PD + + K Sbjct: 303 TPDNIADMIGK 313 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 + +G S + + + + A K + I D Q Q V + QGV Sbjct: 47 DGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVEDLITQGV 106 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 D I I PV +T +++A +A IPV +DR D+ ++ + ++N+ GKL G++ Sbjct: 107 DLIVINPVDSTAIATSVEKANEANIPVICVDR---GSDQGELVSFIASNNVEGGKLAGEY 163 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 ++++V G+ V++L+G GAS +R +GF EA I ++ SQ+ +F R++G VM Sbjct: 164 ILEKV-GENAEVIQLEGIPGASSTRERGEGFEEA--TNGKINLLASQTANFDRAEGMTVM 220 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 E+ ++A ++ V+ ND+M +GA +AIK +G KD+ DG D KA+ +G Sbjct: 221 ENLLQAH---PDVKAVFCQNDEMALGASEAIKASG----KDVTIVGFDGNEDAIKAVEEG 273 Query: 261 EANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLY 301 +A+V P G A + KY K G E+ + L Sbjct: 274 NLSATVAQKPKEMGKLAIETAIKYLK-GEEVEETVDSPLELI 314 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 154/288 (53%), Gaps = 3/288 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 VGFS++ + WR A+ + + EAE RG +++ + QI V + Q +D + Sbjct: 71 FKVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFL 130 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 FIAP+ P ++ AK +P LLDR + Y+ T+ ++ I +G+ DWL + Sbjct: 131 FIAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYIWQGEACADWLSE 190 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +V++ G VG S DR+ GF +K N++I+ +QSG+++R++ ++VM++ Sbjct: 191 NGGADSYKIVQITGKVGGSDVRDRQAGFETGVKKYENMEIVATQSGEWSRTEAQKVMQNI 250 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 I++ G + +VY HND+M +G + A+K AG+ PG D+ +IDG + +A++ GE N Sbjct: 251 IQS--TGGDFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAIIAGEMN 308 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 P AFD +EKY + + E + + + A+E+L Sbjct: 309 CIATCNPRFGPVAFDTMEKYLNEEKL-EHIINNEEYIIDSTNAEEKLP 355 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 91/316 (28%), Positives = 148/316 (46%), Gaps = 26/316 (8%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-------------LTVGFSQVGSESGWRAAETNVAKS 47 M K L + +A++ S P + +G S ++ + + N Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA+K+GI + + D Q Q V + QGVDA+ I P ++ ++ A IPV Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 LDRS + T V +DN+ G++ D++V+++ GK V EL+G GAS +R Sbjct: 121 VTLDRSAE---NGKVETLVASDNVKGGQMAADFIVEQL-GKGAKVAELEGVPGASATRER 176 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF + + + +I Q+ DF R+KG VME+ ++ +I V+AHND+M +GA Sbjct: 177 GSGFHKTADD--KLNVIAKQTADFDRTKGLNVMENLLQGN---PDIQAVFAHNDEMALGA 231 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDG 287 I+AI+ +G K+IL DG D KA+ G+ +A++ P + G + +G Sbjct: 232 IEAIRSSG----KEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNG 287 Query: 288 TMPEKLTLTKSTLYLP 303 EK L Sbjct: 288 KKVEKTIPAPLKLETK 303 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 119/301 (39%), Positives = 163/301 (54%), Gaps = 8/301 (2%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A+ +A PL VGF+Q S + WR AET K A K G L + D Q+ ++ Sbjct: 41 ALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTDANSSNSKQVSDIQ 100 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID---VKDKSLYMTTVTADN 130 + +AQ VD + P PV+ +AK A IPV L+DR +D K Y+T + +D Sbjct: 101 NMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGSDF 160 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 I +G DWLVK GK ++EL+GT GAS A DRKKGF E I P + II SQSGD Sbjct: 161 IDQGHRAADWLVKATGGK-AKIIELEGTTGASAANDRKKGFDEIIAKNPGMTIIASQSGD 219 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 F R KG++VME+ ++A ++ VYAHND+M +GAI AIK AG +PGKDI +IDG Sbjct: 220 FARDKGRQVMETLLQAH---PDVTAVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGT 276 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 A+ GE ASV+ +P A D ++Y K +P Y ++ + Sbjct: 277 KGGMDAIAAGELGASVQSSPFFGPLACDVAQRYAKGEKIP-TWVKVSDKFYDKSNVQQNM 335 Query: 311 E 311 + Sbjct: 336 Q 336 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 6/291 (2%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 L +GFS+ WR AE AE G L + + E QI V +AQ D Sbjct: 66 KKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDVEDLIAQKCD 125 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDKSLYMTTVTADNILEGKLIGDW 140 I I PV A P + K A IPV +D +D K K ++TT+ +D +G+ +W Sbjct: 126 LIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSDQYQQGQGCAEW 185 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 V V K V+E+ G G S A +R +GF E + + NIK+I Q+G+++R+ +EV+ Sbjct: 186 TVGHVGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVI-QQNGEWSRATAQEVV 244 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 ++ ++ G+ ++Y H+D+M +GA+ +K+AGLKP +D+ ++DG + A+ Sbjct: 245 QNVAQS---GQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDGQKEALDAIKAD 301 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 E A + TP FD + KY + E+ + +ST+ + E E Sbjct: 302 EIGAIITCTPKGGDVLFDCINKYFAGDELEEEYFVHQSTI-TTENVDELYE 351 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 137/305 (44%), Gaps = 19/305 (6%) Query: 5 LLIVSAVSAAMSSMAL------AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 L +++A S A T+G S + + + + EA+KRG+ + I Sbjct: 13 LFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVII 72 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D Q Q V + QGVDA+ I P ++ ++ A +PV +DRS + Sbjct: 73 VDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVPVVTIDRSAE--- 129 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + T V +DN+ G++ ++ ++ GK V EL+G GAS +R GF Sbjct: 130 QGKVETLVASDNVKGGEMAAAFIADKL-GKGAKVAELEGVPGASATRERGSGFHNIADQ- 187 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 ++++ QS DF R+KG VME+ ++ +I V+AHND+M +GA++AI +G Sbjct: 188 -KLQVVTKQSADFDRTKGLTVMENLLQGH---PDIQAVFAHNDEMALGALEAINSSG--- 240 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 KDIL DG D ++ D + +A+V P + G G +K Sbjct: 241 -KDILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDILHGKKVQKTISAPL 299 Query: 299 TLYLP 303 L Sbjct: 300 KLETQ 304 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 117/334 (35%), Positives = 170/334 (50%), Gaps = 25/334 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-------------LTVGFSQVGSESGWRAAETNVAKS 47 ++++++IV AV A ++ A P + VG SQ GSES WR A T K Sbjct: 7 IFRKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKE 66 Query: 48 EA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 ++ G L + +QKQENQIKA+RSF++Q VD I +P+V GW+ VL+EA++AEIP Sbjct: 67 TLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIP 126 Query: 107 VFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNG-----KPCNVVELQGTVGA 161 V L+DR I+VKD+SLY V +D + EG+ G WL + G N+V LQGT G Sbjct: 127 VILMDRKINVKDESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGT 186 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 + R +GF E N I+ + DFT +KG+E M + N I ++ + ND Sbjct: 187 TAMFGRTQGFEEIAAKHENWNILEQTNADFTTAKGEEEMRRLL---NTYPEIDVLVSQND 243 Query: 222 DMVIGAIQAIKEAGLKPGK--DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDA 279 DM GA++AI+ AG G DI S DG + + G N VE P G + Sbjct: 244 DMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPYQ-GKYIEE 302 Query: 280 LEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + + + G EK + ++ L + Sbjct: 303 IIQALETGQSIEKDNYVEEKVFTQKNVLSVLNDR 336 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 9/291 (3%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 L VG + + ++ + + EA+K GI L D ++ Q++ V SF+AQ V Sbjct: 36 GKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQVESFIAQKV 95 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 DAI + P P + +A A+IP+ ++ K V +D++ ++ + Sbjct: 96 DAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSSKPS----AFVGSDDVESARIAMKF 151 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 + ++ GK NVV + G +G + I R++G E +K PN+K++ Q+G++ R+K +M Sbjct: 152 IADKLGGK-GNVVMMHGYMGQAAQIKREQGAREILKQYPNLKLLAHQTGEWDRAKAMSLM 210 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 E++I++ G I V+AHND+M +GA++A+ +AGLK ++ SID +PD +A+ G Sbjct: 211 ENWIQSY--GSQINAVFAHNDEMGLGAVKALTDAGLK--DKVIVVSIDAIPDALQAVKKG 266 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 +A+V G A G +K TL L D + L+ Sbjct: 267 SLDATVFQNAEQQGAKAIATAIKAAKGQPFDKETLVPFQLVTKDNLSKFLK 317 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 185/304 (60%), Gaps = 15/304 (4%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +T+G+SQ+G++S WRAA T K AE GI L+ ++ + KQENQI+A+RSF+AQ VD Sbjct: 41 KITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAIRSFIAQKVDI 100 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +P+VATGW+ VLKEAK A+IPV ++DR + D SLY+ + D++ EG+ WL Sbjct: 101 IAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTNDDSLYIMRIGTDSVREGREAFRWLD 160 Query: 143 KEV---------NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN---IKIIRSQSGD 190 + G N+ E++G G+SV R GF +A+ +PN +I+ +Q+ Sbjct: 161 GYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNKDAYEILVAQNST 220 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 F + GK+VM +K N I +++A NDDM +GAI+AI+ AGLKPG+DI+ S DG Sbjct: 221 FQKDGGKQVMTEMLK--NYKDKIDILFAQNDDMALGAIEAIEAAGLKPGQDIVIVSCDGT 278 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 I++AM+DG++N +VE P + GP + K G E+ K ++Y + A + Sbjct: 279 RAIFQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFVKDSVYPAEIAPMAI 337 Query: 311 EKKK 314 +++K Sbjct: 338 QERK 341 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 9/302 (2%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQKQENQIKAV 72 A +S + + +G + + W + + K + ++ + + D Q+ V Sbjct: 47 AQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQV 106 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 +F+ Q VDAI + PV ++ +A A IP+ +++R D DK+ V +++I Sbjct: 107 ENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKA--TAYVGSESIK 164 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 G + + + K +NGK + + G +G I R +G + IK P++K++ + ++ Sbjct: 165 AGIMQMEEVAKLLNGK-GKIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLEGTAEWD 223 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R+KG +ME+++++ GK I V +ND+M IGAI A+++ G D++ +D PD Sbjct: 224 RAKGMSLMENWLQS---GKKIDAVVCNNDEMAIGAIMALEDEGKL--DDVIVAGVDATPD 278 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + + +G+ +V G + G EK L D +E ++K Sbjct: 279 ALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTKDNVEEYIKK 338 Query: 313 KK 314 + Sbjct: 339 WQ 340 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 152/296 (51%), Gaps = 9/296 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 + S + LTVGF+Q G+ + W A T + A++ G+ D + + Sbjct: 40 SSGSKEIGPDLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIE 99 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 +A+ +D + IAP+ TG E VL EA + +PV L R+ + Y+TTV +D E Sbjct: 100 DMLAKDLDILVIAPMEDTGLEAVLDEAAEKGVPVILSARTTQGE----YVTTVYSDQAWE 155 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFT 192 G+ + + +++ VVEL+G G S R+KGF + + P+++I+ Q+ +F+ Sbjct: 156 GERCAELIGEKIPD--AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFS 213 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R + + M + ++A I VY HND+M +GA+QAIK+AGL PG+DI IDG + Sbjct: 214 RQEAMDAMANILQA-KGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKE 272 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 ++ + GE +V+ +P F+ ++K DG +K T+ + + E Sbjct: 273 AWELVKSGEMLGTVQCSPKHGPTVFEVIQKIL-DGETVQKETIVPDQVITKENVDE 327 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 163/288 (56%), Gaps = 4/288 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ-QKQENQIKAVRSFVAQGVDA 82 L VGFSQ+ +++ WR A+ N + G+ + + E Q++ + + + VD Sbjct: 42 LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + I P PVL++AK+A+IPV L+D+S + D+S Y++ ++AD + EG++ D L Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILIDQSAETIDQSYYISLISADYLKEGQICADLLA 161 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 ++ PC +VE+ GT + A R KGF +A++ PN++II + G+F R ++ ME+ Sbjct: 162 EKFGDTPCRIVEIYGTESSPGAQARSKGFHQALQQYPNMEIIDIEYGNFDRVTAQKAMEN 221 Query: 203 -FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 IKA +G+ I V+AH+D+ +GA+QAIK AGL PG+ I SI+G+ D+ KA++ GE Sbjct: 222 ALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGR-ISIVSINGIQDVCKAIIAGE 280 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +VE P G +L + K+ G P + + + A E Sbjct: 281 YLGTVESNPRW-GFIVASLIQQKERGYKPFPTVMIPYRIITAENAAEY 327 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 10/276 (3%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 +G + + + A+ EA+K+G+TL D Q QI ++ + + V I + Sbjct: 42 IGLAVSTQSNPFFVTLKKGAEEEAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILV 101 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 P + +K A A IPV LDRS++ + + + V +DN+ GK+ ++L++++ Sbjct: 102 NPTDSDAVVGAVKAANAAGIPVVTLDRSVNGGEVA---SHVASDNVAGGKMAAEYLLEKI 158 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIK 205 G +VVEL+G GAS A +R +GF + I A ++K++ Q DF R+KG VME+ ++ Sbjct: 159 -GNQGDVVELEGIPGASAARERGQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQ 217 Query: 206 AENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 265 A KN+ V+AHND+M +GA+QA++ AG+ KD+ D D A+ G+ +A+ Sbjct: 218 AN---KNVKGVFAHNDEMALGAVQALEAAGM---KDVTVVGFDATDDAVNAVKAGKMSAT 271 Query: 266 VELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 V P + G K DG +K L Sbjct: 272 VAQKPKLIGKTAVDAAKKIIDGQPVDKSLPVPLDLV 307 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 9/300 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A S +G + + + + + A++ GI L I D Q Q+K V Sbjct: 56 AGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVE 115 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + + + DAI I + ++ +A IPVF +DR + + ++ + D I Sbjct: 116 NLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGE---VISHIGYDAIKS 172 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 G++ G +LV + GK +VE+QG +G +VA +R +GF E +K+ P+++I+ Q DF R Sbjct: 173 GRMAGQYLVDTLGGK-GKIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADFDR 231 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 +KG VME+ ++A I +YA ND+M++GA++A++ AG +I+ D + D Sbjct: 232 AKGMSVMENILQAN---PEIDGLYAANDEMLLGALEAMEAAGRT--DEIVKIGCDAIDDT 286 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 AM G+ +A++ P G A +G E + + L DT + K+ Sbjct: 287 LDAMKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQDTVDSLVTKE 346 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 118/294 (40%), Positives = 169/294 (57%), Gaps = 7/294 (2%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT-LKIADGQQKQENQIKAVRSFVAQGV 80 + + + + Q+G+ES WR A T K A GI L +D QQKQENQI AVR+ + QGV Sbjct: 44 SDMVLCYPQLGAESDWRTANTASIKETAATLGIKQLVFSDAQQKQENQISAVRACIQQGV 103 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 D I + PVV GW+ VL EAK+A IPV ++DRS+ DKSLY T + ++ +LEG+ Sbjct: 104 DVIALPPVVEDGWDAVLTEAKNAGIPVIIVDRSVSA-DKSLYSTHIGSNMVLEGERAAAE 162 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 K + ++EL GT G+ A+ R KG + NI II SQ+G+FTR++ VM Sbjct: 163 FNKMM-PNGGAILELSGTTGSGAAVGRAKGLRNKL--NSNITIIDSQTGNFTRAEAVPVM 219 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 ++ +K G + ++ HNDDM IG I+ +K AG+KPG D+ S+DG ++AM+DG Sbjct: 220 QALLKKYTPGTDFQGIFIHNDDMGIGVIEVLKAAGIKPG-DLKIVSVDGTRGGFQAMVDG 278 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 A VE P + F+ K +G E +T T+Y P+ A E L +K Sbjct: 279 WFQADVECNPLLGPQVFELALK-LMNGQPVEPEVITNETVYYPENAAELLPTRK 331 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 8/290 (2%) Query: 25 TVGFSQVGSE-SGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 TVGFSQ E + +R AET K EA KRG+ L + Q + QI V+ +A+G D + Sbjct: 82 TVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGADLL 141 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 IAP+ + GWEPVL+ A +IP+ +DR I+ Y++ + +D + +G+ D +++ Sbjct: 142 VIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQGRRAADKMIE 201 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAE-AIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 GK V L G G +V +R KGF + + AP +K++ Q+GDF R KG+ V E Sbjct: 202 ATGGK-GEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSVTEQ 260 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 I+++ I +YA ND+M +GA+ A+K AG KPG + ++DG + K ++DG Sbjct: 261 LIQSK---PGIKGIYAENDEMGLGAVNALKSAGKKPGA-VKIVTVDGTRNAVKQIVDGWI 316 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + +E P AF L+ + K G ++ + K + Y A+ +L K Sbjct: 317 SGVIESNPRFGPLAFQTLDTFTK-GEEVQQDIVIKDSAYDKTNAEADLGK 365 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 13/310 (4%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQ 65 +++A + +S+ +G SQ WR A + AEK + AD Q Sbjct: 18 VLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEKHPEFEVIFADAAQDN 77 Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 QI + +FV GVD I +P AT + A DA IPV LLDR ID Y Sbjct: 78 SKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILLDRKIDGDK---YTQF 134 Query: 126 VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR 185 + ADN+ G++ G+++ + V E++G G S IDR GF E IK I+I+ Sbjct: 135 IGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGIDRDNGFREGIKKNDKIEIVA 194 Query: 186 SQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG 245 + D+ R K V E ++ I + A ND M GA A K AG + DIL Sbjct: 195 VNNADWLREKAITVAEEMLQTN---DEIDLFLALNDPMAEGAYIAAKNAGREG--DILFV 249 Query: 246 SIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 DG+P +++MDG + + ++ P A ++ + +G +K S + Sbjct: 250 GFDGLPTPDGGIRSVMDGRLSMT-QVYPTGGTEAIESAYQLLVEGKELDKTLTLTSEIVT 308 Query: 303 PDTAKEELEK 312 PD A+E LEK Sbjct: 309 PDNAEELLEK 318 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 93/300 (31%), Positives = 148/300 (49%), Gaps = 8/300 (2%) Query: 14 AMSSMALAAPLTV-GFSQVGSE-SGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKA 71 ++ + L P T+ GFSQ S + +R+ ET+ ++A+ G+ L + Q Sbjct: 71 GVAQLNLTDPSTIVGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQ 130 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 + +AQG + +AP + G P L EAK +IPV +DR++ S ++ + ++ Sbjct: 131 IEDMIAQGAKVLIVAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTACSDFIAFIGSNFY 190 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGD 190 + ++ D L G V L GT G +V DR GF + +K PN+ ++ SQ+G Sbjct: 191 GQAQIAADDLA-TATGSQAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGK 249 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 F ++ G+ VM ++A I VYA ND+M +GAIQAI AG KPGKDI SIDG Sbjct: 250 FDQTDGQSVMAQMLQAN---PGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGT 306 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + + G A VE P AF +L+ + + K+ + S + A++ L Sbjct: 307 QQAVQDVAAGTIYADVETNPRFGPLAFSSLQAFFGTSGVASKVIIKDSH-FTQANAQQAL 365 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 11/301 (3%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 +L+V + A +G + + + A+ ++++ G L + D Q Sbjct: 15 ILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQND 74 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 + + + G+ + + P + ++ A A IPV +DR + + ++ Sbjct: 75 PAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGE---VVS 131 Query: 125 TVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 + +DNI G+L +++ E+ N K VVELQG GAS +R KGF I N+K+ Sbjct: 132 HIASDNIKGGELASSFIIDELKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKL 191 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 I SQ+ +F R++G VME+ I+A++ + V+AHND+M +GA +A+K A K I+ Sbjct: 192 ISSQAANFDRAQGLSVMENIIQAQS---DFDAVFAHNDEMALGAAKALKTAN----KKII 244 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG D A+ E +A+V P + G +G K K L Sbjct: 245 VVGFDGDEDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQNISKNIPVKLRLITK 304 Query: 304 D 304 + Sbjct: 305 N 305 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 8/314 (2%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG 61 K+L + SA + AA L +G S + + A N ++ A+ + + ++I DG Sbjct: 1 MKKLALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIEDG 60 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR-SIDVKDKS 120 + + Q+ +++F+A GVDAI + PV + +A+ A IP+ ++R I+V Sbjct: 61 KNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLP 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI--KNA 178 V ++ + G L + + + + GK NVV + G + AI R K + I K Sbjct: 121 DNQAFVASNEEVSGTLQTEEVCRLLGGK-GNVVVMMGELSNQAAIQRTKDIHDVIKRKEC 179 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 +K++ Q+ +++R KG ++M +++ A G V ++ND+M IGAIQA+K +G K Sbjct: 180 SGMKVVAEQTAEWSRLKGNDLMTNWLSA---GLEFDAVISNNDEMAIGAIQALKASGRKM 236 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 ++ ID PD AM G+ + +V + G G ++ Sbjct: 237 -DSVVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPF 295 Query: 299 TLYLPDTAKEELEK 312 L P + L K Sbjct: 296 ELVTPANLDKYLSK 309 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 137/304 (45%), Gaps = 11/304 (3%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLKIADG 61 R ++ + V S ALA L +G S ++ + A + A + G+TL++ D Sbjct: 14 RAVLFATVLCLAGSTALA-DLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVEDS 71 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 Q+ V SF+AQ VDAI + P + + A A IP+ L+ +V++ Sbjct: 72 GSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFPA 131 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 + V D G++ ++L +++ GK ++ L G + R G + + P I Sbjct: 132 GVVFVGTDERRLGQMQMEYLAEKMGGK-GDLAILLGRLAHDDTRKRTAGVKDVLARYPQI 190 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 +++ QSGD+ R KG ++ +++ + G+ V A+ND+M IGA A+++AG + + Sbjct: 191 RVVEEQSGDWQRDKGLDLTNNWLSS---GREFDAVVANNDEMGIGAAMALRQAGRR---E 244 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 + G IDG PD A+ G+ ++ P G + + + L Sbjct: 245 VSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWIPVHLI 304 Query: 302 LPDT 305 PD Sbjct: 305 TPDN 308 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 19/324 (5%) Query: 1 MWKR---LLIVSAVSAAMSSMALAA-------PLTVGFSQVGSESGWRAAETNVAKSEAE 50 M K L+I +A +++ A +G S S+ +R N ++EA+ Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 51 KR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFL 109 L + + + Q + + VAQ +AI + PV + A D+ IP+ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 110 LDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKK 169 ++ + +D + V +D+I G + ++ VK++NGK NVV L+G AI R + Sbjct: 121 VNNFLKNQDDAA--AYVGSDSITSGIMEAEYAVKQLNGK-GNVVILKGEPNHETAIKRTE 177 Query: 170 GFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 GF + ++N P IKII Q GD+ R+ G ++ E++IK NG + A+ND+M IGAI Sbjct: 178 GFKQVLQNYPEIKIIDEQYGDWKRTLGMQITENWIK---NGTKFDAILANNDEMAIGAIM 234 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 A+KE L ++ G ID PD K + +G +V G G Sbjct: 235 ALKENNL--INNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGEK 292 Query: 290 PEKLTLTKSTLYLPDTAKEELEKK 313 K L +P+ A + L K+ Sbjct: 293 INKKIFVPYELVVPNDADKYLGKQ 316 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 7/309 (2%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 + AV +SS AA +G + + + + + A K + L+ D Q Sbjct: 6 LFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQGDVV 65 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 QI V+ F++Q VDA+ + PV + + + A +A++P+ ++R D + +TTV Sbjct: 66 RQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPKGVTTV 125 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 +++I G+L +L +++ GK + + G + + DR +G + +K+ P I I+ Sbjct: 126 ASNDIEAGQLQMRYLAEKMGGK-GTIALIMGDLAQNSTHDRSEGVKQVLKDYPGITIVEQ 184 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q+ ++ R+KG ++ +++ A G+ + A+ND+M IGA A+++AG G+ + Sbjct: 185 QTAEWQRNKGMDLTSNWLLA---GRTFDAIVANNDEMAIGAAMALQQAGKAKGE-VAIVG 240 Query: 247 IDGVPDIYKAMMDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 IDG+PD A+ G ASV P A A + K K G + L P+ Sbjct: 241 IDGLPDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIK-GEPVDAEVWVPFQLITPEQ 299 Query: 306 AKEELEKKK 314 + K Sbjct: 300 VAVFEQHYK 308 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 L VG S + + + N + A+K ++++D Q Q + + + VD Sbjct: 46 KDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVD 105 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + I PV ++ P +K+A DA IPV +DRS D +T V +++ G++ ++ Sbjct: 106 VLIINPVDSSAITPAVKDANDAGIPVITVDRS---SDGGKVLTLVASNSTKGGQMAAKYM 162 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 ++++ GK + ELQG GAS +R KGF A K + I+ Q+ F R+KG V E Sbjct: 163 IEKL-GKDAKIAELQGIPGASATRERGKGFDGAAKG--KLDIVSKQTAGFDRAKGLTVTE 219 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + ++ +I +++ ND+M +GA+QA+K AG K I DG D KA+ G+ Sbjct: 220 NILQGNG---DIVGIFSQNDEMALGAVQAVKAAG----KKITIVGFDGEADGIKAVKAGD 272 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 A+V P G +G +K + +L + A + Sbjct: 273 MAATVAQKPEEMGRLALQAAYDHFNGKTVKKNVESPLSLVTTEDANK 319 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 138/286 (48%), Gaps = 12/286 (4%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 L +G S + + + + N KS A+++ L ++D Q Q+ V++F++Q VDA Sbjct: 48 ELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDA 107 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I PV + P +K A +A IPV +DR + +TTV +DN+ GK+ V Sbjct: 108 ILINPVDSDAIVPAIKAANNAHIPVIAMDR---GSNGGTVLTTVASDNVAAGKMAAQA-V 163 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 +++ GK V+EL GT GAS IDR KGF K + I+ SQS +F R+ G ++ Sbjct: 164 EKLVGKNVKVLELSGTPGASATIDRGKGFNSEAKTL-GLNILSSQSANFDRTTGLNTTQN 222 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 +++ K++ ++A ND+M +GA +A++ G K I IDG + + A+ G Sbjct: 223 MLQSH---KDVQAIFAQNDEMALGAAKAVQATGQK----IAIFGIDGESETHDAIKAGTM 275 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 A++ P G G + + L D + Sbjct: 276 TATIAQQPAKIGEMALQATYDYYQGKKIAHMINSPIYLVDKDNVDQ 321 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 168/316 (53%), Gaps = 11/316 (3%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-----LTVGFSQVGSESGWRAAETNVAKSE-AEKRGI 54 M K++L + A +A +SMA+ +T+G++QVG ES WR A T + +E+ G Sbjct: 38 MNKKVLGMLACTAVAASMAVGVSAEGDLITIGYAQVGHESDWRTANTKNYEDVFSEENGY 97 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 L + D Q++AVR+F+ QG+D I IAP+ + GW+ VL+EA+DA IPV + DR I Sbjct: 98 ELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADREI 157 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 + D S+Y V EG G+WL ++++G +++++G+VGAS AI R GFAE Sbjct: 158 EA-DASMYDAWVGTAPYDEGVTAGNWLAEQLDGAEAKILQIEGSVGASAAIGRTDGFAEV 216 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + +++ SQSGDFT+ G+ VMESFIK +V ND+ GA+ A+ A Sbjct: 217 MAEHSEWELLDSQSGDFTQDGGQAVMESFIKTYEG--QFNVVVCQNDNEAYGAMDAMDAA 274 Query: 235 GLK--PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 G+ G D++ S D D + +DG+ N VE P A +E+ + Sbjct: 275 GITYGVGGDVILISYDATHDGLQYTLDGKINLDVECNPIQAETVKGVIEQMEAGEDFEAT 334 Query: 293 LTLTKSTLYLPDTAKE 308 +T P E Sbjct: 335 TLITDEAFCAPGIESE 350 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 21/320 (6%) Query: 5 LLIVSAVSAAMSSMALA--------APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 LLI SA+ S + +TVG S + + K + + G L Sbjct: 15 LLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGMEKGVKDKTSEIGCKL 74 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + Q+ + + + VD + + + A P +K+AK+A IP+ LDR + Sbjct: 75 IETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAKEANIPIIFLDRGANS 134 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGK---PCNVVELQGTVGASVAIDRKKGFAE 173 +D T + DN+ G+ + ++K + K NVVE++G G S A DR KGF Sbjct: 135 EDM---TTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEGLQGTSAARDRGKGFHN 191 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 + +KI+ Q+GDF + K VM++ ++A I V+ HNDD +GA +AI Sbjct: 192 VMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQAN---PKIDAVFGHNDDCTVGAEKAIIA 248 Query: 234 AGLKPG----KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 + + I IDG+ +++ G + S+ P G + G Sbjct: 249 SNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQDPIGMGVQAVEVGLKAIKGEQ 308 Query: 290 PEKLTLTKSTLYLPDTAKEE 309 EK TK D A +E Sbjct: 309 VEKHIYTKFFPITKDNATDE 328 >UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y2_9CLOT Length = 341 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 106/297 (35%), Positives = 155/297 (52%), Gaps = 12/297 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 VG SQ+GSES WR A T ++ +++ G L + +QKQENQIKA+RSF++Q VD I Sbjct: 47 VVGVSQIGSESVWRTANTASIQNTFSKENGYFLIFDNARQKQENQIKALRSFISQQVDYI 106 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 +P+V GW+ VL+EAKDA IPV L+DR + VKD+SLY V +D EG+ G WL Sbjct: 107 VFSPIVEDGWDTVLQEAKDAGIPVILMDRKVKVKDESLYTAWVGSDFAEEGQNAGRWLAG 166 Query: 144 EVN-----GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + G+ N+V LQGT G++ I R +GF N I+ DFT +KG+E Sbjct: 167 HLKEEGRAGEEINIVVLQGTNGSTSVIGRTEGFDSVAAQHDNWNILEQADADFTTAKGRE 226 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD--ILTGSIDGVPDIYKA 256 M+ + ++I +V + NDDM GA++AI EAG G D I+ S D + Sbjct: 227 EMKKMLHKY---EDIDVVVSQNDDMTFGALEAIGEAGQSTGTDGGIILISFDATKSALEK 283 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + G N +E P + + + + G EK ++ + + Sbjct: 284 VEQGIINVDIECNPEQGAY-IEEVIRVLESGGQAEKEYFVSERVFTKKNVASVIGDR 339 >UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6Q1_9FIRM Length = 365 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 119/349 (34%), Positives = 179/349 (51%), Gaps = 38/349 (10%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP----------------------LTVGFSQVGSESGWR 38 M KR ++ + AAM++ +TVGFSQVG+ES WR Sbjct: 1 MKKRKVLAVLLCAAMTAALAVGCGGSKGSDSSDKSSDSSSSSDDVITVGFSQVGAESDWR 60 Query: 39 AAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVL 97 A + K +++ G L D QQKQENQI A+R+F+ Q VD I +APV TGW+ VL Sbjct: 61 TANSQSMKDTFSKENGYDLIFDDAQQKQENQITAIRNFIQQEVDYILLAPVTETGWDTVL 120 Query: 98 KEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW-----LVKEVNGKPCNV 152 +EAKDA+IPV ++DR +DV D SLY T + D + EG+ +W K + ++ Sbjct: 121 QEAKDADIPVIIVDRMVDVSDDSLYTTWIGTDALCEGRKAAEWLNGFAEAKGIAASDIHI 180 Query: 153 VELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKN 212 ++QGT+G++ I R KG E + ++ Q+G+FT++KG+EVMES +K N Sbjct: 181 ADIQGTIGSTAQIGRTKGLEEGVDKY-GWDLVAQQTGEFTQAKGQEVMESMLKQY---DN 236 Query: 213 ICMVYAHNDDMVIGAIQAIKEAGLKPGKD-----ILTGSIDGVPDIYKAMMDGEANASVE 267 I +VY ND+ GAI AI+ AG G D I+ S D + ++DG+ VE Sbjct: 237 INVVYCENDNEAFGAIDAIEAAGKTVGSDIANGEIMVISFDTTHAGLQDVLDGKIECDVE 296 Query: 268 LTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNM 316 P A + L K + G +KL ++ D + ++ ++ Sbjct: 297 CNPLHGPRA-EELIKKLEAGEDIDKLNYVDEEIFAHDDTVKSVKATNSL 344 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 145/314 (46%), Gaps = 9/314 (2%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADG 61 K+L++ S + + + LA + +G S + + +S+ ++ G ++ + D Sbjct: 4 KKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQFEDA 63 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 + QI+ + +FV+QGVDAI + PV G +P++K A+ A+IP+ ++R +V Sbjct: 64 KGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVT-LPA 122 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 M V +D+ L GKL + L K +NGK NV+ L G + DR +G E P I Sbjct: 123 GMAYVGSDSKLAGKLQMEELAKLMNGK-GNVMILMGELSNEATRDRTRGVEEVAAKYPGI 181 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 KI+ Q+ + R + ++ + G+ I + ++ND+M IGAI A+K+A Sbjct: 182 KILDKQTAKWGRKEAVDITTDW---ALTGQQIDAIASNNDEMAIGAILALKQAKKSG--- 235 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 +L +DG PD + + G+ SV G G E L L Sbjct: 236 VLVAGVDGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPYQLI 295 Query: 302 LPDTAKEELEKKKN 315 +E +K + Sbjct: 296 TKANYQEFADKNRK 309 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 15/299 (5%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRS 74 + + T+G SQ +R + AEK ++ AD + Q+ V + Sbjct: 41 ACKGPDSKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVEN 100 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 F+ + VD + I+P A V+K+A + IPV +LDR ++ + + T + ADN+ G Sbjct: 101 FMTKKVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGE---AFTTYIGADNVQIG 157 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 + G++ + + +V+L+G G++ A +R+KGF E I I+++ + G++ RS Sbjct: 158 RQAGEYFKNTLLPQGGKIVQLKGLSGSTPAAEREKGFMEGIA-GSKIEVVDTADGEWERS 216 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP--- 251 G++ M++ +KA +I VYA ND M GA A + AG KD+ IDG+P Sbjct: 217 VGQQKMDALLKAH---PDIQAVYAQNDPMAEGAWLAAQAAGR---KDLKFVGIDGLPIES 270 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 KA+ G +A+ L P A +A K D K + L + A + Sbjct: 271 GGIKAVEQGRLSAT-NLYPTGGEEAVEAARKLLIDCQPVPKEQTLPTELVTRENAAQVY 328 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 147/304 (48%), Gaps = 13/304 (4%) Query: 1 MWKR-LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K LI +A+ + S+ A T+ + + + A++ A++ G L + Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVL 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q ++ V +GV AI I P + ++ A ++IPV LDR D Sbjct: 61 DSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGD- 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ + +DN++ G++ G+++V++V G+ V++L+G G S A +R +GF A+K Sbjct: 120 --VVSHIASDNVVGGEMAGNFIVEKV-GEKAKVIQLEGIAGTSAARERGEGFMNAVK-GS 175 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 +++++ SQ DF R+KG VME+ + A ++ V+A ND+M +GA++AI+ +G Sbjct: 176 HMELLASQPADFDRTKGLNVMENLLAAN---PDVQAVFAQNDEMALGALRAIQASG---- 228 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 K+++ DG D A+ G+ A++ P++ G G E Sbjct: 229 KEVMIVGFDGTDDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLK 288 Query: 300 LYLP 303 + Sbjct: 289 VVTK 292 >UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RQG9_9CELL Length = 328 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 117/291 (40%), Positives = 176/291 (60%), Gaps = 11/291 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + VGFSQ+G+ESGWR A T K+ E+ G L D QQKQENQIKA+R F+AQ VD Sbjct: 46 IRVGFSQLGAESGWRTANTESVKASLSEENGFDLTFVDAQQKQENQIKALRDFIAQDVDV 105 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +PV+ TGW+ VL+E KD+ IPV L+DR++D Y+T + AD EG G+W+ Sbjct: 106 IAFSPVIETGWDEVLQEIKDSGIPVVLVDRTVDTTVDDPYVTWIGADFKAEGTTAGEWVK 165 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 + N + ELQGT+G+ +DR++GF E + + +II SG+FTR++GK +E+ Sbjct: 166 E--NAPDAKIFELQGTLGSGAQVDREEGFGEVVGD----QIIGKASGNFTRAEGKTAVEA 219 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++A ++ M++ HNDDM +GAI+AI+ AG KPG DI S+DGV D +A++D + Sbjct: 220 ALQAY---PDMTMIFTHNDDMGLGAIEAIEAAGKKPGVDIQIVSVDGVRDGLQALVDKKF 276 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 N VE P + +EK +P++ + + +EE++ + Sbjct: 277 NYVVECNPVFGDQLAELIEKVAAGEDVPKETIVID-KAFDQTITQEEVDAR 326 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 16/309 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIAD 60 K + ++ + + A +G +Q S+ WR + EA G++++I Sbjct: 8 MKWITVLFCLLGLAACRQDAPRFRIGVAQC-SDDSWRHKMNDEILREAMFYDGVSVEIRS 66 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q + V F+ +GVD + I+ A P+++EA IPV L+DR I Sbjct: 67 AADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSDK-- 124 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y + ADN G+ +G+++ + GK NVVEL G G++ A++R +GF AI N P+ Sbjct: 125 -YTAYIGADNYEIGRAVGNYIASSLKGK-GNVVELTGLGGSTPAMERHQGFMAAISNYPD 182 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK+I + R + M+S ++ I VYAHND + GA QA K+AG + K Sbjct: 183 IKLIDKADAAWEREPAEVEMDSMLRRH---PKIDAVYAHNDRIAPGAYQAAKKAGRE--K 237 Query: 241 DILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 +++ ID +P + + ++D +A+ + P + + P + T+ Sbjct: 238 EMIFVGIDALPGKGNGLELVLDNVLDATF-IYPTNGDKVMQLAMNILEKKSYP-RETVMN 295 Query: 298 STLYLPDTA 306 + + A Sbjct: 296 TAVVDRTNA 304 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 148/294 (50%), Gaps = 11/294 (3%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 + L +G + + ++ + ++ +++A++ G+ L D ++ Q++ V SF+ Q Sbjct: 27 SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQ 86 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 GVDAI + P P +K A DA+IP+ ++ K V +D+ ++ Sbjct: 87 GVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSETSAKP----TAFVGSDDTESARIAM 142 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 ++ +++ GK N++ + G +G + I R G + +K P +K++ QSG++ R+KG Sbjct: 143 KYIAEKLGGK-GNILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWDRAKGMS 201 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 + E++I++ G I ++A ND+M +GA++A++ AGLK +L S+D +PD +A+ Sbjct: 202 LTENWIQSY--GDKINAIFAQNDEMGMGAVKALEAAGLKG--KVLVVSVDAIPDALQAVK 257 Query: 259 DGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 G +A+V G A + K K EK L L + L+ Sbjct: 258 KGTLDATVFQNAKEQGGKAIETAVKAAK-KEAFEKEVLIPFQLVDKGNVEGFLK 310 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 135/310 (43%), Gaps = 14/310 (4%) Query: 5 LLIVSAVSAA-----MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKI 58 +L + +S + + VG S + + + K AEK G I L+ Sbjct: 15 MLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEF 74 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D ++ Q+ V +FV QG D I + PV + +P+ A + ++R+ Sbjct: 75 VDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLP 134 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 Y V ++ G + ++L +++ GK N+V L G + I R +G E K Sbjct: 135 DGAY--YVGSEEKKAGIMQMEYLAEKMGGK-GNIVILMGKLDNEGTIKRTEGVEEIAKKY 191 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P+IKI+ Q+G + R+ G E+++ G I + ++NDDM +GA+QA+K++G Sbjct: 192 PDIKILDKQTGLWQRTDGMAKTENWL--NKYGNEINAIVSNNDDMALGAVQALKDSGKTG 249 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 I +D PD A+ G+ +A+V + G + K +G K T Sbjct: 250 ---IFVIGVDATPDGLAALAAGDISATVFQDADGQGGGAVEVAKKAANGETVVKETWVPF 306 Query: 299 TLYLPDTAKE 308 L P+ E Sbjct: 307 KLVTPENINE 316 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 81/323 (25%), Positives = 132/323 (40%), Gaps = 22/323 (6%) Query: 1 MWKRLLIVSAVSA-------AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 M K L +V + ++ + + W AK AE+ G Sbjct: 4 MKKSLFVVLVLVGLLLVSFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLG 63 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 I D Q + + +A G DAI P A G +K AK+A IPVF +DR Sbjct: 64 YEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG 123 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-----NGKPCNVVELQGTVGASVAIDRK 168 I+ + L + + +DN G L+G++ VK + + K EL G + A DR Sbjct: 124 INA--RGLAVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRS 181 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 GF + P K++ QS +F R +V E ++A I ++ ND M +GA+ Sbjct: 182 NGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAH---PEIKAIWCGNDAMALGAM 238 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG-EANASVELTPN-MAGPAFDALEKYKKD 286 +A + AG DI DG D+ A+ +G + A++ P MA A + ++Y + Sbjct: 239 KACEAAGRT---DIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRG 295 Query: 287 GTMPEKLTLTKSTLYLPDTAKEE 309 ++ L + + Sbjct: 296 ERSFPEIVPVTVELVTRENIDKY 318 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 141/304 (46%), Gaps = 13/304 (4%) Query: 1 MWKRLLIVSAVSAAMS-SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K ++SA + S S A TV + + + A+++A++ G L + Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q ++ V +GV AI I P + ++ A ++IPV LDR + Sbjct: 63 DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR---GASR 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ + +DN++ G++ G ++ ++ G V++L+G G S A +R +GF A+K Sbjct: 120 GEVVSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAARERGEGFMNAVK-GS 177 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 ++++ SQ DF R+KG VME+ + A ++ V+A ND+M +GA++AI+ +G Sbjct: 178 KMQLLASQPADFDRTKGLNVMENLLAAN---PDVQAVFAQNDEMALGALRAIQASG---- 230 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 K ++ DG D A+ G+ A+V P+M G G E Sbjct: 231 KSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALK 290 Query: 300 LYLP 303 + Sbjct: 291 VIAK 294 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 13/299 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 LL + +S + S A A + + + + A+++A + G L D Q Sbjct: 12 LLSAALLSVSTSFSASAQD-AIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIALDSQND 70 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 ++ V +GV AI I P A ++ A A IPV LDR+ D ++ Sbjct: 71 PSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHGD---IVS 127 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + +DNI G+L G+++ +++ GK V++L+G G S A +R +GF+ A+ N +++ Sbjct: 128 HIASDNIAGGELAGEFIAQQL-GKNAKVIQLEGIAGTSAARERGEGFSNAVTAN-NFELL 185 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 SQ DF RSKG VME+ + A ++ V+A ND+M +GA++AI+ AG KDIL Sbjct: 186 SSQPADFDRSKGLNVMENMLAANG---DVQAVFAQNDEMALGALRAIEAAG----KDILV 238 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG + A+ + +A+V P + G G + EK + Sbjct: 239 IGFDGTDEGIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQ 297 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 139/285 (48%), Gaps = 9/285 (3%) Query: 22 APLTVGFSQVGSE-SGWRAAETNVAKSEAEKRGIT-LKIADGQQKQENQIKAVRSFVAQG 79 + L VGFSQ S + +RA ET + A+ + L + Q Q+ V + + QG Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI-LEGKLIG 138 A+ IAP+ +TG +P +A IP+ LDR S Y++ + ++ +G++ Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLSFLGSNFYFKQGEIDA 173 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 L K G V E+QG G SV + R KGFA +K P +KI+ Q+G++ + ++ Sbjct: 174 RELAKATGG-HAMVAEIQGAYGNSVEVARTKGFAAGLKAYPGMKIVTEQTGNWFTTDAQK 232 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 VM + A N+ VYA D M GAI A+++AG KPG+ + SIDG + ++ Sbjct: 233 VMSQILLAH---PNVNAVYAQADTMAFGAITALRDAGKKPGQ-VKIVSIDGTRQGVQDIV 288 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG A E P AF L+ + DG + + +Y P Sbjct: 289 DGWIYADDETNPRFGPIAFHELQNWF-DGKPVPRHIVLTDHIYTP 332 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 16/309 (5%) Query: 1 MWKRLLIVSAVSAAMSS----MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 + K++ V + + + +G + + + A+ EAEK G L Sbjct: 3 INKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDL 62 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + D Q + V + GV A+ I P + ++ A + IPV LDR + Sbjct: 63 VVLDSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANG 122 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEA 174 + + +DNI G++ ++++ + + NVVE+QG GAS DR +GF Sbjct: 123 ---GKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHNI 179 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + I Q+ DF R KG +VME+ I+A NI +V+AHND+M +GA++AIK + Sbjct: 180 MDKNDKFNFISIQAADFDRQKGLQVMENIIQAN---PNIQVVFAHNDEMALGAVKAIKAS 236 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 G+ L DG D ++ E A + P++ G L G + Sbjct: 237 GINA----LVIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKIYKGESIKNKI 292 Query: 295 LTKSTLYLP 303 +Y Sbjct: 293 AADLKVYTK 301 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 85/310 (27%), Positives = 152/310 (49%), Gaps = 9/310 (2%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ 62 KR+++V+A+ + S +A T+G S + + + EA+ RGI+++ D + Sbjct: 5 KRIVLVAALGCSTSVLAE----TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFEDAR 60 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY 122 Q V++F++ GVDAI + PV + G + K A IP+ ++R+ Sbjct: 61 GDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLPAG 120 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 + V +D G L + L + N + NV + G + + A+ R K + + P +K Sbjct: 121 VVFVGSDEKQSGTLQMEELARLANYQ-GNVAVMIGNLTDAGALQRTKDVEQVVAKYPKMK 179 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 +++ QS +++RS+G ++M ++I NG++I +V A+ND+M IGAI A+++AG K G + Sbjct: 180 VVQKQSANYSRSEGMDLMLNWIT---NGESIDIVAANNDEMAIGAIMALQQAG-KQGSKV 235 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 L G ID PD KA+ G+ +V G A + + G + L Sbjct: 236 LVGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDPYYWIPFELVT 295 Query: 303 PDTAKEELEK 312 P ++ K Sbjct: 296 PANMQKYAAK 305 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 18/313 (5%) Query: 1 MWKRLL--IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAET-NVAKSEAEKRGITLK 57 M K LL I+ + S +G SQ S+ WR + + G+ ++ Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQC-SDDEWRHKMNHEIVREALFYDGVEVE 59 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 I + NQI+ + F+ + VD + +AP A PV+++A IPV ++DR I Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKILSD 119 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 Y V ADN GK +G ++V + GK ++E+ G G++ A++R +G A+A+K Sbjct: 120 ---RYTAFVGADNCEIGKDVGQYIVNRLGGK-GKILEITGLEGSTPAMERHRGLADALKA 175 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 P I+I S G + +S E M+S ++ + K I +V+A ND M +GA + ++ L+ Sbjct: 176 EPGIEITASVDGAWLQSVAGEKMDSILQ---DNKGINLVFAQNDRMAVGAYLSARQRQLE 232 Query: 238 PGKDILTGSIDGVPD---IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 K++L ID +P + +++G +A+ + P + E+ T Sbjct: 233 --KEMLFVGIDALPGKGYGVEQVLEGVLDATF-IYPTGGDKVMQVAMDIL-EKRPYERDT 288 Query: 295 LTKSTLYLPDTAK 307 + L A+ Sbjct: 289 KLSTALVDKTNAR 301 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 141/315 (44%), Gaps = 11/315 (3%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K+ +I +A+S + + A A TVG S + + N +++ G+TL++ D Sbjct: 1 MKKFIIGAAMSVLLGTAAHAE--TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR-SIDVKDK 119 Q Q +++F+A VDAI + PV + K A DA+IP+ ++R ++V Sbjct: 59 AQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSL 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK--N 177 V +D + G L + + + GK N V + G + A R + + +K Sbjct: 119 PDGQAFVASDETVAGTLEAKEVCRLLGGK-GNAVIMMGELSNQAARMRTQSAKDVLKTDE 177 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 I ++ Q+ ++ R++G +++ +++ + G V A+ND+M IGAIQA+K AG K Sbjct: 178 CKGISVVEEQTANWQRTQGSDLVTNWLSS---GIEFNAVIANNDEMAIGAIQALKAAG-K 233 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 K + +D D AM G+ + +V G G EK Sbjct: 234 DMKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIP 293 Query: 298 STLYLPDTAKEELEK 312 L P+ K+ + K Sbjct: 294 FQLVTPENVKDYVAK 308 >UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D949_9CLOT Length = 352 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 5/289 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L GF+ + W + G + + QI V +AQG+D + Sbjct: 64 LKAGFAACHYTNDWNITNCETVCEDLRSVGFEVVWNEANNDTATQIANVEDLLAQGIDLL 123 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 I P G P L+ +DA +PV LDR + D SLY+T + DN+ G+ +G WLV Sbjct: 124 VIKPKEEEGLIPALEACRDAGVPVICLDRKV--SDPSLYVTAIMTDNVAGGETVGQWLVD 181 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 C +VE+ GT G++ I+R KG + I I+II SQ GD RS+ + V E+ Sbjct: 182 HY-PDGCKIVEIVGTAGSTGQIERSKGLSNVIDKYDQIQIISSQVGDNMRSEAQTVTENM 240 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI-DGVPDIYKAMMDGEA 262 I+A + I ++ ND+M +G +QA+ G++PG++I +I DG ++ + + DG Sbjct: 241 IQAYGK-EGIDVIVTQNDEMAMGCLQALWGLGIEPGQEITICTIGDGNSEVVEQVKDGTV 299 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 E TP + + K EK + + + + A +EL Sbjct: 300 GCVYESTPYLGPQVLEVAHKIFVTKEDVEKYIPSANRFFTIENADQELP 348 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 11/299 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 +S + VG + ++ + +N AK +A + G+ LKI DG QI V + Sbjct: 46 TSKPADKKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETM 105 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 ++ GVDAI + P A + +A A IPV ++ +D + + Y V + ++ G+ Sbjct: 106 ISDGVDAIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSY---VGSKDVYAGE 162 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L + ++ GK N+V L G +G S ++R +G +K P+IK++ ++ +++RS+ Sbjct: 163 LEMQAIADKIGGK-GNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSE 221 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 VME++++A I V A ND+M +GA +AI+ L DI T +DG+ D Sbjct: 222 AMTVMENWLQA---FDKIDAVVAENDEMALGARKAIEAKKL----DIPTIGVDGITDALD 274 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 A+ G A++ G + K G +K D E ++ + Sbjct: 275 AVEKGTLIATIFQDGAGQGSKALEIAVAKAKGENVDKEYWIDFEPVTKDNVAEFKQRAQ 333 >UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQX4_9FIRM Length = 409 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 152/288 (52%), Gaps = 12/288 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +++GF+QVG ES WR A T A+ +E G L D Q++AVR F+ Q VD Sbjct: 101 ISIGFAQVGHESDWRTASTKSAQDVFSEANGYELSFVDCDNDSAAQLEAVRGFIQQDVDY 160 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I P+V+TGW+ VL E +DA IPV ++DR+ID DK Y++ V ++ EG G+WL Sbjct: 161 IIIDPIVSTGWDTVLTECEDAGIPVIVIDRTIDDSDK--YVSWVGSNFKDEGLACGEWLK 218 Query: 143 KEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 + K N + ++G+ GAS I R GF E I+ SQSGDFT + G+EV Sbjct: 219 AYADAKGMGEINALVIEGSTGASATIGRTDGFKEIADKY-GWTILDSQSGDFTEAGGQEV 277 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD--ILTGSIDGVPDIYKAM 257 MESF ++ +V ND+ GA+ A+ AG+ G D ++ S D + + Sbjct: 278 MESFCQSYAG--QFNVVICQNDNEAFGAMTAMDNAGVSYGVDGDVVLVSFDANKPALQLV 335 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 MDG+ A+ E P MA P + + + + G PEK + + + Sbjct: 336 MDGKITANFECNP-MAAPFVEQVIQQLQAGETPEKEIYMDESWFAAED 382 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 94/326 (28%), Positives = 149/326 (45%), Gaps = 23/326 (7%) Query: 1 MWKR----LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEA-EKRGIT 55 M K L + + + + +G SQ SE WR ++ + G+T Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQC-SEDIWRDKLNQELQTATYMEDGVT 59 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 ++ A + QI+ + F+ GVD + I+P A PV+ +A + IPV L DR D Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 K Y + ADN+ G+ +GD++ ++++ NV+EL G G+S AI+R +GF E I Sbjct: 120 GK----YTAFIGADNVEVGRQMGDYVARQLDY-HGNVIELMGLKGSSPAIERHRGFIERI 174 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGK--NICMVYAHNDDMVIGAIQAIKE 233 P IK++ S GD+T++ G+ +++F + I V+A ND M +GA +E Sbjct: 175 SRYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAMGA----RE 230 Query: 234 AGLKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP 290 AGL P K L +D +P K + D +AS + P Sbjct: 231 AGLLP-KSTLFCGVDALPGEQGGMKLVADSVLSASY-IYPTRGDLVMKLAMNILNH-RPY 287 Query: 291 EKLTLTKSTLYLPDTAKEELEKKKNM 316 +K L +S L PD A L + M Sbjct: 288 QKENLLQSALVTPDKAPLMLMQADEM 313 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 138/303 (45%), Gaps = 13/303 (4%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRSFVA 77 +G SQ +R + K+ A + +K AD Q Q+ V +++ Sbjct: 42 GADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYIT 101 Query: 78 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLI 137 Q +D + I+P A V+K+A D IPV +LDR ++ Y + DN+ G Sbjct: 102 QQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGD---AYTGFIGGDNVQIGTEA 158 Query: 138 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 G ++ ++V NVVE++G GA+ +R +GFA IK P +K++ + SGD+ R KG+ Sbjct: 159 GKYVAEKVLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREKGQ 218 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP---DIY 254 M++ +KA I +VYAHND M GA A K G + K++ ID +P Sbjct: 219 AQMDALLKAN---PKIDVVYAHNDPMAEGAYLAAKAVGRE--KEMKFIGIDALPIPSGGI 273 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 KA+ G A+ P A A +K D EK + L A + ++ Sbjct: 274 KAVEQGRLTATFT-YPTNGKEAIAAAKKLLVDCGTIEKTQTLPTRLIDKTNAAQIYAQEN 332 Query: 315 NMG 317 G Sbjct: 333 PTG 335 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 17/310 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAE--KRGITLKI 58 + L + A+ A ++ P +G SQ SE WR K E + + I Sbjct: 6 YHILFLYFALFACLACQRERNPRYVIGVSQC-SEDLWRQTMNEELKREVALYQADAEVLI 64 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 + QI + F+ Q VD + ++P + PV+++A IPV L+DR I + Sbjct: 65 RSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATES 124 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 Y V A+N GK G + + + GK N+ E++GT G++ +R KGF +A+KNA Sbjct: 125 ---YTAYVGANNYQIGKEAGLYAIGVLKGK-GNIAEVRGTKGSTSDAERHKGFVDALKNA 180 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P ++I+ G+F ++ K M+ + +I +V+A ND M G +A + Sbjct: 181 PEVQIVAETWGNFLQADAKTQMQQIFQEH---PHIDLVFAMNDPMAAGTHEAAMQFN--- 234 Query: 239 GKDILTGSIDGVPD-IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 GK +D + + + + +AS + P + K ++ + Sbjct: 235 GKIPFIIGVDALQQVGIQNIENSVQDASF-IYPTGGEKVIELAMKIL-HKQPFQRENILN 292 Query: 298 STLYLPDTAK 307 +T+ + Sbjct: 293 TTVVDKSNVR 302 >UniRef50_C0CVX1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVX1_9CLOT Length = 373 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 147/297 (49%), Gaps = 5/297 (1%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 VG +Q+ + +R AETN E G + + + QI V +AQ Sbjct: 81 FGKGKKVGLAQMHYTNAFRIAETNSVLEAFEGAGFEVVWNEAKNDTATQISNVNDLLAQD 140 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 +D + + P G P L+ AK A +PV LLDRS + Y+T + ++ EGK D Sbjct: 141 IDYLLLPPKEEEGLVPALEAAKAAGVPVILLDRSANGTPGEDYVTAIRSNAEAEGKWCAD 200 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 W+++ K CNVVE+ G G++ A+DR KGF IK NI ++ SQ G+ RS+ + Sbjct: 201 WVIQNYPDK-CNVVEIFGAPGSTTAMDRSKGFMATIKGHDNIVLLESQVGNNMRSEAQVC 259 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI-DGVPDIYKAMM 258 ME+ I+A G I +V H+D+M GA+QAI GL PG+DI SI DG + + ++ Sbjct: 260 MENLIQAY--GDEIDVVVTHSDEMTFGALQAIDGMGLVPGEDIDVLSIGDGSSAMLQEII 317 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKN 315 DG A E +P + A + ++ G + L + D A ELEK Sbjct: 318 DGRVAACSECSPLLGPQALQVVAALEQ-GMEVDGLIWANDRFFTVDNAATELEKAGW 373 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 154/326 (47%), Gaps = 23/326 (7%) Query: 1 MWKRL-----LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS-EAEKRGI 54 M +RL L + + A V FSQ + +RAA+ + + A + + Sbjct: 1 MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 L I+D QQ Q+ V +F+ Q D + +AP V+ +A +A+IPV L+R I Sbjct: 61 KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLV----KEVNGKPCNVVELQGTVGASVAIDRKKG 170 + Y + + +DN+ G+L G ++V K+ NVV ++G +G I+R +G Sbjct: 121 LQPN---YTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRG 177 Query: 171 FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 E + P IKI+ D+ ++K K+ M ++A+ I +VY HND M IGA Sbjct: 178 AKEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQ---PKIDVVYGHNDPMAIGAYLG 234 Query: 231 IKEAGLKPGKDILTGSIDGV---PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKD- 286 KE G + K+++ +DG+ K +MDG A+ + P A + + ++ Sbjct: 235 AKELGRE--KEMIFVGVDGLGGPAGGIKKVMDGVLAATF-VYPLWVDKAVEIGTRILREP 291 Query: 287 GTMPEKLTLTKSTLYLPDTAKEELEK 312 G +P K + +S + + A + EK Sbjct: 292 GFVPAKDYVLESVMVTTENAPQMYEK 317 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 11/290 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 T+G + + T + +AE+ G L + D QQ +NQI + + +AQ VD I Sbjct: 45 YTIGCTVYYMTE-FVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLIAQKVDVI 103 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 +A V + P ++ DA IP+ ++ + ++ Y V D++L G+L + Sbjct: 104 IVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHY---VGPDDVLAGELEMQNAID 160 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQSGDFTRSKGKEVMES 202 E+ G+ NVV L+G +G S I R +G + I ++ Q+ +++R + ++E+ Sbjct: 161 EIGGE-GNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTANWSREEALTLVEN 219 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 +++ + I + AHND+M +GAIQA++ AGL I+ +D + D A+ DG Sbjct: 220 WLETFSG--KIDAIVAHNDEMALGAIQALEAAGLT--DKIVVTGVDAILDGCNAVKDGTL 275 Query: 263 NASVELTPNMAG-PAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 +V + G A + ++L+ D E L+ Sbjct: 276 LGTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITKDNVDELLD 325 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 77/310 (24%), Positives = 132/310 (42%), Gaps = 17/310 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAE--KRGITLKI 58 + L + A+ A ++ P +G SQ SE WR K E + L I Sbjct: 15 YHILFLYFALFACLACQRERNPRYVIGVSQC-SEDLWRQTMNEELKREVALYQANTELLI 73 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 + QI + F+ Q VD + ++P + PV+++A IPV L+DR I + Sbjct: 74 RSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATES 133 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 Y V A+N GK G + + + GK N+ E++GT G++ +R KGF +A+ NA Sbjct: 134 ---YTAYVGANNYQIGKEAGHYAIGILKGK-GNIAEVRGTKGSTSDAERHKGFVDALNNA 189 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P ++I+ G+F ++ K M+ + NI +V+A ND M G +A + Sbjct: 190 PEVRIVAETWGNFLKADAKVQMQQLFQQH---PNIDLVFAMNDPMAAGTHEAAMQFN--- 243 Query: 239 GKDILTGSIDGV-PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 GK +D + + + + +AS + P D K E+ + Sbjct: 244 GKIPFIIGVDALQQEGISNIENNVQDASF-IYPTGGEKVIDLAMKIL-HKQPFERENILN 301 Query: 298 STLYLPDTAK 307 + + + Sbjct: 302 TAVVDKSNVR 311 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 16/289 (5%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIK 70 A S +GFSQ WR + K E TL D + QI Sbjct: 38 MAGCQSATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQIS 97 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 +++ + QG+D + ++P + V+++ IPV LLDR I+ + Y + DN Sbjct: 98 QIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETES---YNAYIGGDN 154 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 + G+L G ++ + GK +VE+ G +S A +R +G E ++ P I++++ +G Sbjct: 155 VEIGRLAGVFIGNHLKGK-GRIVEIWGLPSSSPAQERHRGLLEELRKYPGIQVVKELNGQ 213 Query: 191 FTRSK-GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDG 249 + R G+ V N K++ +V+AHND M +GA K+ G++ D ID Sbjct: 214 WERDTVGRVVAAEL----NTLKDVDLVFAHNDVMALGAYAVCKQKGIEKKLD--FVGIDA 267 Query: 250 VP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 +P +A+ DG AS L P A + + ++ + L Sbjct: 268 LPGPNAGMQAITDGILKASF-LYPTGGEEAIETATRILAGKSVKREQVL 315 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 7/316 (2%) Query: 1 MWKRLLIVSAVSAAMSSMAL-AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKI 58 M K LL + ++S A+ A +G W+ + + EK + +K+ Sbjct: 1 MKKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKL 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 AD Q+ V++F+ Q VDA+ + P T + + AK A IP+ +++R + + Sbjct: 61 ADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEH 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + V +D I G++ G+++V + GK + L G +G R +G E Sbjct: 121 MQYVTSFVGSDEIEGGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQH 180 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 NIK++ Q G + R +G + E+ + K I ++ ++ND+M IGAI A ++ G+K Sbjct: 181 KNIKVVSKQEGRWERDRGLAIAENVLAGN---KGINVIVSNNDEMAIGAILATRKLGIKD 237 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 +DI +D PD + + G +A+V + G + G + Sbjct: 238 -EDITIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPF 295 Query: 299 TLYLPDTAKEELEKKK 314 L PD +E + K Sbjct: 296 ELVTPDKKEEYQARYK 311 >UniRef50_C7GGA9 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGA9_9FIRM Length = 378 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 109/297 (36%), Positives = 161/297 (54%), Gaps = 12/297 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRS 74 SS A +T+GF+QVG ES WR A T+ S + G L+ D Q++AVR Sbjct: 63 SSAASGDTVTIGFAQVGHESDWRTASTDSCLSVFSADNGYDLQFVDCDNDSAVQLEAVRG 122 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 F+ Q VD I I P+V+TGW+ VL E ++A IPV ++DR+ID DK Y++ V ++ EG Sbjct: 123 FIEQDVDYIIIDPIVSTGWDTVLTECEEAGIPVIVIDRTIDDSDK--YVSWVGSNFKTEG 180 Query: 135 KLIGDWLVKEVNGKPC---NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 G+WL + K NV+ ++G+ GAS I R GF E I +A I+ SQ+GDF Sbjct: 181 LAAGEWLKAYTDAKGISDVNVLVIEGSTGASATIGRTDGFKE-IADANGWNILDSQTGDF 239 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD--ILTGSIDG 249 T++ G+EVMES+IK+ +V ND+ GA+ A+K AG+ G D ++ S D Sbjct: 240 TQAGGQEVMESYIKSYEG--KFNVVVCQNDNEAFGAMDAMKAAGISYGVDGDVILVSFDA 297 Query: 250 VPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 + +M G+ NA E P +A P + + K + G PEK ++ + Sbjct: 298 CTAGLEYVMSGDINADFECNP-LAAPFVEEVIKRLQAGETPEKEVYMTEHWFVNEDV 353 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 149/301 (49%), Gaps = 16/301 (5%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSF 75 ++A +GFSQ + WRA +EA K + L I DG+ + E Q+ V + Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + Q VDA+ ++P + G V+++A DA+IPVF+LDR+++ Y V DN L G+ Sbjct: 88 IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQ---YTQFVGGDNKLIGR 144 Query: 136 LIGDWLVKEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK-IIRSQSGDF 191 G++ V+ + GK N+VE+ G +G A DR GF E P IK ++ QSGD+ Sbjct: 145 AAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIKNLLDKQSGDW 204 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 + + +M + ++ N + I +VY HND M GA A K+AG + K+I ID +P Sbjct: 205 KQDQAYNIMATALR---NNEKIDLVYGHNDPMAYGAYLAAKDAGRE--KEIKFIGIDALP 259 Query: 252 -DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + + +GE A+ L K+ K G EK + + A + + Sbjct: 260 NEGVTWVSNGELTATF-LYATPGAEGLRQAVKFLK-GEKVEKTVTLDTLKVTEENAAQIM 317 Query: 311 E 311 + Sbjct: 318 K 318 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 12/294 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++ A+ T+ F+ + + A+ +A++ G+ + D Q + + Sbjct: 40 TTTGSASAKTITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLANA 99 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 A G + I P + P +++ D +IPV +DR+++ + + Y + +DN GK Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNANVASY---IASDNETGGK 156 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L +NG+ ++ LQG G+S + +R KGF E +K+ PNIK++ Q+ +F R+K Sbjct: 157 QAAKVLSDAINGE-GEILVLQGKTGSSASRERGKGFDEGLKDNPNIKVVAKQTAEFERAK 215 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G +V + ++A N+ ++A ND+M +GAI+A+ G K GKD+ DG D K Sbjct: 216 GLDVTTNLLQAH---PNVKAIFAENDEMALGAIEAL---GSKAGKDVKVIGFDGAEDALK 269 Query: 256 AMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 A+ DG AS+ P MA A K K T +K+ + + + Sbjct: 270 AIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKKMQ-VEVVAATKENVDK 322 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 129/307 (42%), Gaps = 15/307 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQ 63 L I + +S + + +GFSQ WR + K E G L AD Sbjct: 10 LFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGAKLVYADADN 69 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 QIK V+ + QG+D + I+P A ++++ IPV ++DR +LY Sbjct: 70 NSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRKTT---SNLYT 126 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN G + +L ++G P N++E+ G G+S I+R KGF + +K PN+KI Sbjct: 127 CYVGADNYQIGYMASQYLGNTISG-PANILEVMGLPGSSPTIERNKGFNDGLKKFPNLKI 185 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 GD+ + + + + +I +V+AHND+M A K+ G+ Sbjct: 186 KSQVYGDWMKPNAERQLSKI---SDQLNDIDVVFAHNDNMAFAAQSVFKKLGIAS--QAK 240 Query: 244 TGSIDGVPDI---YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 ID P + + +G +AS+ L P A K D K + S + Sbjct: 241 FIGIDATPGAGGGLQMISNGLIDASM-LYPTGGKEAITTAIK-IMDKIPFSKELILPSLV 298 Query: 301 YLPDTAK 307 + Sbjct: 299 IDSSNVR 305 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 85/304 (27%), Positives = 141/304 (46%), Gaps = 19/304 (6%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSF 75 T+G SQ SE WR + + A + LK A E Q++ + S Sbjct: 18 CSQGGKRYTIGVSQC-SEDIWREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSL 76 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + +G+D + +AP P + A D IPV + +R Y ++ADN G Sbjct: 77 MNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERK---TGSQKYTAFISADNYEMGH 133 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 ++G+++V ++GK NV+E++G G+S AI+R GF +AIK+ P IK++ S GD+T + Sbjct: 134 VMGEYIVSRLHGK-GNVLEIKGLAGSSPAIERHNGFMDAIKDEPGIKVVGSLQGDWTEAT 192 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP---D 252 + + ++ A + +V+ ND +GA +A+ G+ L IDG+P Sbjct: 193 ACQKSKEWLAANEGVP-VDLVFGANDRTAMGAREAL-------GEKPLYCGIDGLPGKNG 244 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + + D +AS + P D + +G EK T+ S L D AK L + Sbjct: 245 GIQLVRDSLLDASF-IYPTHGDQLMDLAIRIL-EGQPYEKETMLMSALVTHDNAKVLLMQ 302 Query: 313 KKNM 316 + M Sbjct: 303 GEEM 306 >UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional regulator n=8 Tax=Actinobacteridae RepID=C7QZ43_JONDD Length = 328 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 7/294 (2%) Query: 24 LTVGFSQVGSESGWRAA-ETNVAKSEAEKRGITLKIADGQQ-KQENQIKAVRSFVAQGVD 81 +TVGF VG E WR A ETN+ +S E+ G LK A Q++QI A SFV +GVD Sbjct: 38 VTVGFVAVGPEGAWRQANETNIQESFTEEAGFNLKYAPATNLDQKSQIDAFTSFVDEGVD 97 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I ++ +GWE L A++AEIPV L+DR I+ + LY+T + DNI + +W Sbjct: 98 VILLSATEGSGWEDSLSRAQEAEIPVILIDRGIEPDNTDLYVTRIAPDNIAVSTSVAEW- 156 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 K + N L+G G SV +R +G+ I + + +Q+ +++ + K V E Sbjct: 157 AKTALPEGGNYFVLEGPAGVSVVNERNEGWDAVIGAESSFTKLGAQTANWSTEEAKSVFE 216 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + +K+ NN ++ +V+A ND+M +GA QAI+EAGL PG+D+ +IDG +A+ G Sbjct: 217 TVLKSNNN--DVQLVFAQNDEMGLGAAQAIEEAGLTPGEDVKIATIDGTKGALEALAAGR 274 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS-TLYLPDTAKEELEKKK 314 + E P A D + K DG E + +S T P+ A+E L +K Sbjct: 275 LSFVAEYNPLFGDVAVDVVNKVL-DGESVEPYIIAESLTFDSPEAAQEALPDRK 327 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 145/319 (45%), Gaps = 17/319 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETN-VAKSEAEKRGITLKIAD 60 W +LI + + +A S + +G SQ SE WR N + S + +TLK A Sbjct: 6 WLYILIFTLLFSACSDNNV-KKYVIGVSQC-SEDIWRDKLNNELVMSTYQHDNVTLKFAS 63 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q + + F+ +GV+ + ++P V+ +A DA IPV L DR D K Sbjct: 64 ANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDSKK-- 121 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y + ADN G IG+++ ++++GK N+ E+ G +S AI+R +GF +A+K+ Sbjct: 122 -YTAFIGADNYEAGYEIGNFIGQQLDGK-GNIAEICGLQASSPAIERNRGFMDALKDYSG 179 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK+I + GD+ + G M+S + I V+A ND M +GA+Q+IK+ +K Sbjct: 180 IKVIARKHGDWVKESGVMAMDSVLSQAKEP--IQYVFAQNDRMALGALQSIKKHKVKG-- 235 Query: 241 DILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 I ID +P + + DG AS + P + ++ K Sbjct: 236 -IRIVGIDALPVPGGGMENVRDGNLEASY-IYPTRGDSVMQLALNIL-EKKPYKRDNYLK 292 Query: 298 STLYLPDTAKEELEKKKNM 316 L A L + + M Sbjct: 293 GALVTKANANVLLMQNEEM 311 >UniRef50_C2HAH9 ABC superfamily ATP binding cassette transporter, binding protein n=16 Tax=Enterococcus RepID=C2HAH9_ENTFC Length = 338 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 26/332 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALA-------APLTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 M + L ++ + A M PL VGFSQ G+ES WR T + EK Sbjct: 1 MKRVLFFLALIVIAYQMMGCTPNTKEAPDPLVVGFSQSGTESSWRKKHTESIITALEKED 60 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + +G QE QI+ +R+F+A VD I P+ +GW+ VLKEAK AEIPV L++R Sbjct: 61 YQVLYRNGYMNQERQIQDIRTFIAYKVDMIIFTPLQESGWDSVLKEAKRAEIPVILVNRH 120 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV---NGKPCNVVELQGTVGASVAIDRKKG 170 I D L++T + EG G ++ + ++EL G+ ++ R +G Sbjct: 121 IQTNDPELFVTHIGPSFKAEGNRAGLFVSNHFTNSKKQEIRILELAGSENSTPTKLRSEG 180 Query: 171 FAE------------AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 F E I + P + I+ GDF R KGK+ M+ +++ N+ I ++Y+ Sbjct: 181 FLESINRKPTLKKDGTIDHKPPMTIVHRIVGDFIRMKGKDQMKRYLET-NDLSEIDVLYS 239 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD 278 H+D+M GA+ AIKE +KPG+D++ +IDG D+ + + G N VE P++ + Sbjct: 240 HSDEMTHGALAAIKETSIKPGEDLIIVTIDGQEDMIENLRSGIVNCVVECKPDVGWYVAN 299 Query: 279 ALEKY---KKDGTMPEKLTLTKSTLYLPDTAK 307 + +Y + G K T++ Sbjct: 300 TVTRYFGNLQTGKTLPKDIFISETVFSQQNIA 331 >UniRef50_B6FKZ7 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ7_9CLOT Length = 344 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 102/287 (35%), Positives = 150/287 (52%), Gaps = 10/287 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +T+GFSQVG+ES WR A + K +RG L D +Q Q NQI A+RSF+ Q VD Sbjct: 38 ITIGFSQVGAESDWRTANSISIKETFTPERGYDLIFEDARQDQSNQIMAIRSFIQQDVDY 97 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +PVV GW+ VL+EAK A IPV ++DR ++VKD SLY V +D ++G+ L Sbjct: 98 IIFSPVVEDGWDTVLEEAKRARIPVIVIDRMVNVKDDSLYTAWVGSDFYMQGEKACAALK 157 Query: 143 KEVNGK---PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 V+ + N+V +QGT+GA+ I R + EA I+ +SGD+T + E+ Sbjct: 158 AYVDAQEMEKVNIVHIQGTLGATAQIARTQALTEAASRY-GWNIVAQESGDYTEAGAYEI 216 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 M + N +I VY ND+ GA++AIK+ G I S D + M+ Sbjct: 217 MNRVL---NEYDDIDFVYCENDNETFGALEAIKKK-YSNGGGIKLISFDATEKGLRYTMN 272 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 G ++E P M GP + + K +DG P+K +++ Sbjct: 273 GNIMINMECNP-MQGPEAEKIIKQLQDGKTPQKQAFVPEQIFVDGNV 318 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 139/324 (42%), Gaps = 23/324 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAA-------------PLTVGFSQVGSESGWRAAETNVAKS 47 M KR L V V A + S L +T+GFS + + A + A+ Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 A+++G+ L +AD + QI + +AQ VDA+ + P G PV+ A +A+IP+ Sbjct: 61 AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 + + I K+ Y V + G+++G W V + ++G +G S + R Sbjct: 121 IICNGDIADKN---YTAFVGCTDQESGEILGTWFNDNVEH-GSQICIIEGPMGQSGQVGR 176 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF E N +++ Q+ ++ R + + E ++ G + + NDDM +GA Sbjct: 177 YAGFEEV-GMLDNFEVLSCQTANWKRDEAMALAEDWLTTY--GDKLKAIVCENDDMAMGA 233 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDG 287 + A K AG D++ G +DG+ D +A+ DGE SV G + +G Sbjct: 234 LSACKAAGRT---DVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQIING 290 Query: 288 TMPEKLTLTKSTLYLPDTAKEELE 311 +K T D LE Sbjct: 291 EDYQKDTRIPFHAITSDNVDAYLE 314 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 20/312 (6%) Query: 5 LLIVSAVSAAMSSMALAAPL-TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 L+ A++ +++ A A + T+G+S + A+ A++ G + ADG+ Sbjct: 14 LIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFADGKD 73 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL-Y 122 Q + +F+AQGVD I + P V+ P +K+ DA IP+ + DR + + + + Sbjct: 74 DPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQTHGQPIKW 133 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 V+ D + G + G+ VK + GK N+V ++GT GA IDR F E I+ P+IK Sbjct: 134 EALVSWDMVKSGTIGGEQTVKAIGGK-GNIVVVEGTPGAGSTIDRGNAFYEVIEKYPDIK 192 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 I+ +F R+KG+EV E+ ++ G I +Y D+M G +QAIK AG + Sbjct: 193 ILAKIPANFNRAKGQEVTENILQRFKPG-EIDAIYYMADEMTFGGLQAIKAAGRLG--EF 249 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 S+DG + + E + P+ A L Sbjct: 250 KIISVDGQKEAMDLLRAREIDYEAIFHPDDQAVAVRILCDIVNGR--------------T 295 Query: 303 PDTAKEELEKKK 314 PD A + E +K Sbjct: 296 PDLANQTYEGRK 307 >UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKG2_9FIRM Length = 343 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 156/287 (54%), Gaps = 5/287 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 +T+GFSQ + S W+ ET + +A++ G+ L D Q + V+QGV+ I Sbjct: 60 MTIGFSQCDNSSNWKIVETESIQEKAKELGVNLIYTDASGNIAKQASDIEDMVSQGVEYI 119 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 +AP G + LK A DA I V L+DRSI+ + + Y T V +D + E + + +++ Sbjct: 120 IVAPQEEDGLQSALKSAMDAGIGVILIDRSINGEAGNAYTTKVMSDFVWEAEQVAQRVIE 179 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +G+ NVV +QGT GA+ +R+KGF +AI + ++K+I Q +++ K +EVME+ Sbjct: 180 VTSGE-GNVVIIQGTQGATSTTERQKGFMDAIADT-DLKVISDQVANYSMPKAQEVMENV 237 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 ++A+ G +I +VY H DM +GAI AIK AG +PGKD+ +D D +A++ GE Sbjct: 238 LQAQ--GNDIDIVYCHGADMAMGAIAAIKAAGFEPGKDMQVVCVDASKDAMEALIAGELL 295 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + +P FD L G E + + TLY + A L Sbjct: 296 CTCSCSPYFGEVTFD-LIGKMAAGETVEASYINEDTLYDVNNADVSL 341 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 11/315 (3%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K+ +I A + +S+ A A T+G S + + N + A+ G+ L+I D Sbjct: 1 MKKFIIGIAAAVLVSTAAHAE--TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQIED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR-SIDVKDK 119 Q +++F+A GVDAI + PV + K A DA IP+ ++R +++ Sbjct: 59 ALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNIDTL 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK--N 177 V ++ + G L + K ++GK V + G + A R K + + Sbjct: 119 PEKQAFVASNEVDSGTLQTREICKLLDGK-GKAVVIMGELSNQAARMRTKDIHDVLATDQ 177 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 I+I++ Q+ ++ R++G ++M +++ A G V A+ND+M IGAIQA+K AG Sbjct: 178 CKGIEIVQEQTANWQRTQGADLMTNWLSA---GIEFDAVIANNDEMAIGAIQALKAAGRS 234 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 ++ G ID D AM GE + SV G G E+ Sbjct: 235 M-DSVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIP 293 Query: 298 STLYLPDTAKEELEK 312 L E K Sbjct: 294 FELVTKANLAEFQGK 308 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 132/298 (44%), Gaps = 11/298 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSF 75 S + +G S + + + K EA +D Q Q+ V +F Sbjct: 36 STGDSGQKVIGVSISNLDE-FLTYMQDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENF 94 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 +++ VDAI + PV T ++ DA IP+ + +R+ D D++ V +++I G Sbjct: 95 ISRNVDAIIVNPVDTTSAVDIVNMVNDAGIPIIIANRTFDGVDQA--TAFVGSESIQSGL 152 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L + + K +N N+ + G +G I R +G + I+ ++++ + F RS+ Sbjct: 153 LQMEEVAKLLN-NEGNIAIMDGELGHEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSE 211 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G +ME+++ N+G I V A+ND+M +GAI A++ G D++ ID P + Sbjct: 212 GMRLMENWL---NSGTEIDAVVANNDEMALGAILALEAVGK--LDDVIVAGIDATPAALE 266 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 AM +G+ + +V G + +G E + L P+ +E K Sbjct: 267 AMKEGKLDVTVFQDAKGQGATSVKVAVQAANGEDVE-DAMIPYELVTPENVEEYEAKY 323 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 131/321 (40%), Gaps = 16/321 (4%) Query: 1 MWKRLLIVSA---VSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITL 56 M L+V V +S +G SQ + WR A N + EA + + Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVEI 60 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 I D Q E QI+ +R + Q VD + I+P + V +EA A IP + DR ++ Sbjct: 61 IIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVNT 120 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 Y + V A+N G G++ + ++E+ G S A +R KGF +A++ Sbjct: 121 DQ---YTSFVGANNYEIGLAAGNYAANYL-PPNAIILEIWGLTQTSPAQERHKGFVDALR 176 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 ++ R G + + ME ++ + + I VYAHND M I A + Sbjct: 177 EREDLSF-RKIEGQWLVDTAR--ME--LRKLEHPEQIDFVYAHNDMMAIAAREYFMAWDS 231 Query: 237 KPGKDILTGSIDGVPDI-YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 G+++ +D V +A+ DG NAS L P + + G +K Sbjct: 232 IRGRELRIIGVDAVAGAGLEAVEDGRINASF-LYPTGGEQVIRTAMRIIQ-GEPVDKFIP 289 Query: 296 TKSTLYLPDTAKEELEKKKNM 316 ++ +A+ L + + Sbjct: 290 LRTAPVDHQSARTLLLQADQL 310 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 142/312 (45%), Gaps = 10/312 (3%) Query: 1 MWKRLLIV-SAVSAAMSSMALAAPLTVGFSQ--VGSESGWRAAETNVAKSEAEKRGITLK 57 M K+L I A S S+ + A +G +Q VG +S + + + + + Sbjct: 1 MQKKLAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEGI 60 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + D QI V+ + Q VDAI + P P++++AK IPV + + +I K Sbjct: 61 VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISEK 120 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-K 176 + + I +G+ + + + +NGK VV++ G G AI+R+KGF +++ Sbjct: 121 GQEFITAFSGPNTITQGQYAAELMCEGLNGK-GQVVQITGQPGYQTAINRQKGFEDSLAA 179 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + P + II SQ GD+ R K + VME+FI G I VYA +D+M IGA+ AIKEA L Sbjct: 180 DCPGVSIIDSQPGDWNREKSQRVMENFITR--FGTKIDGVYAADDNMGIGALNAIKEADL 237 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 K+I Y A+ +G SV +P A A+ +G EK Sbjct: 238 ---KNIKIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNGDKVEKDNYF 294 Query: 297 KSTLYLPDTAKE 308 + E Sbjct: 295 DTPKVTLANIDE 306 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 17/313 (5%) Query: 1 MWKRLLIVSAVSAAMSSMAL-----AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT 55 M +R ++++V+A +A LT+ S + N K+EA+ +G+ Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVN 80 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 L +DGQ Q + + + Q V+AI I+P+ P ++EA A +PV +DR +D Sbjct: 81 LTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVD 140 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + V ADN+ G+ +V + LQG GA AIDR KG + Sbjct: 141 G--VQGILAHVGADNVKGGEAEASAMVAAF-PNGAKLFHLQGQPGAGPAIDRNKGVHNVL 197 Query: 176 KNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + +II Q+ +F R++ V E+ + A + NDDM +GA++A Sbjct: 198 DPLKDKYQIIFEQTANFARAEALSVTEAGLAANGKP---DAIICANDDMALGALEACAAR 254 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMP-EK 292 D+ D +P+ A+ DG+ +VE P A Y K+ T P EK Sbjct: 255 NFT---DVKIYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEK 311 Query: 293 LTLTKSTLYLPDT 305 L L + D Sbjct: 312 LVLLTPIVIGKDN 324 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 144/312 (46%), Gaps = 11/312 (3%) Query: 1 MWKRLLIVSAVSAAMSS-MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K ++ +A++ MSS +A A + FS + A A++ G+ L++ Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q Q+ + + + +G ++P + E +DA++PV LDRS+ K Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-A 178 + A+N G+ IGD+ VK ++V L G G+S I+R +G +++K Sbjct: 121 ---VPHFGANNYKGGQAIGDF-VKARFPNGADIVLLTGQPGSSSNIERTQGIRDSLKAGG 176 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 +++ Q+G++ RS+G ++ES + + + + + NDDM +GAI+A++ GLKP Sbjct: 177 SKYRLVADQTGNWMRSEGMRIVESVLPSLPKRPQV--ILSANDDMALGAIEALQSQGLKP 234 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMA-GPAFDALEKYKKDGTMPEKLTLTK 297 G+ ++ D VP+ + DG A+ + P A A L + + Sbjct: 235 GE-VMVTGFDAVPEALARVRDGWLAATADQRPGYAVTQAMTQLTNNIRTKSAITGADY-P 292 Query: 298 STLYLPDTAKEE 309 T+ D + Sbjct: 293 PTMITKDNLNDA 304 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 131/300 (43%), Gaps = 13/300 (4%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSF 75 + A A L +G + + + + + + L I D + + + Q + SF Sbjct: 39 TEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSF 98 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 VAQGVDA+ I+PV A +K DA IPV + ++ V + N G+ Sbjct: 99 VAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVW---VGSSNENGGE 155 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + ++ +++ GK + L+G +GA R G+ +K+ P+I+I+ Q+G++ R + Sbjct: 156 IEMKYVAEKLGGK-GKIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQREE 214 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++E+ + A G + + ND M +GA++A+K AG K I ID + D Sbjct: 215 AMALIENLLTA---GTELDAIVCQNDGMALGALEAVKAAGKK--DQITITGIDAIVDALD 269 Query: 256 AMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 ++ GE +A+ G A D K + T+ L D ++ K Sbjct: 270 SIKAGELDATCFQDAIGQGTNALDMAVKAARGETVERMDI--PFELVTKDNVDGYYDRIK 327 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 75/315 (23%), Positives = 139/315 (44%), Gaps = 18/315 (5%) Query: 1 MWKRLLIVSAVSAAM----SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 M K+ + S ++A + S+ LA+ + ++ + A A ++A++ G Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDT 60 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 +A Q + + + +A+ A+ + A L+ K A IP FL DR I+ Sbjct: 61 LVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN- 119 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + +T + ++N +L G+ + + G VEL G + A R +GF + + Sbjct: 120 -KTGIAVTQIVSNNFQGAQLAGEKFAE-LMGDGGEYVELLGPESDTNAQVRSEGFHDILD 177 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 N P K++ QS ++++++ MES ++A NI V ND M +GA A++ AG Sbjct: 178 NFPEFKMVARQSANWSQTEAFSRMESILQAN---PNIKGVITGNDSMALGAEAALQAAGR 234 Query: 237 KPGKDILTGSIDGVPDIYKAMMDG-EANASVELTPN-MAGPAFDALEKYKKDGT--MPEK 292 KD+ DG+ + +++ G A++ A + + Y + G+ +PEK Sbjct: 235 ---KDVFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTGLPEK 291 Query: 293 LTLTKSTLYLPDTAK 307 L L AK Sbjct: 292 Q-LMDCVLIDSSNAK 305 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 146/308 (47%), Gaps = 15/308 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-- 61 +L + S+++ + ++A A + + G+ + + A+ A+ +A + G+ + + Sbjct: 5 KLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVLSPPQ 64 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 + ++QI V + +GV AI IA V++ A+ A IPV +D K + Sbjct: 65 ESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDT----KGINK 120 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 +T + DN K+ D++ V+ + +V LQG + S R G +K + Sbjct: 121 GVTFIGTDNKAGAKMAADFICDRVS-RGSDVAILQGIITQSTGKARADGAHAGLKGC-GL 178 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 I+ Q ++ R++G+ VME+ + + + V+A ND+M +GA++A+K+A + D Sbjct: 179 NIVAEQPANWDRAQGRTVMENILTRN---QKLKAVFASNDNMALGAVEALKDADM--LND 233 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVEL-TPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 ++ D PD K+++ GE A++ + NM + + K ++P + T + L Sbjct: 234 VIVVGFDANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSLP-PVVDTGTLL 292 Query: 301 YLPDTAKE 308 A + Sbjct: 293 VTKKNAAD 300 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 14/319 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 KR+L+ + ++ S A A ++G S + + N + + + +++ D Sbjct: 1 MKRILLAAVMAINFSCSAGAE--SIGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQMED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q Q V++F+A GV AI + PV E + K A DA++P+ ++R D+ Sbjct: 59 AQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVDRL 118 Query: 121 LYM-TTVTADNILEGKLIGDWLVKEV----NGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + +D + G L + + + GK NVV + G + + R K + I Sbjct: 119 PETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHDVI 178 Query: 176 K--NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 +K++ Q+ ++ R++ +M +++ A G V A+ D+M IGAIQA++ Sbjct: 179 ATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA---GIQFDAVIANADEMAIGAIQAMRS 235 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 AGL P KD + IDG D + M G + +V G G ++ Sbjct: 236 AGL-PVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLARGKKTDRT 294 Query: 294 TLTKSTLYLPDTAKEELEK 312 L P + + + Sbjct: 295 IWVPFQLITPTNVADFVGR 313 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 10/290 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 + A +T+G + ++ + +EA+K+GI + ++D + Q+ ++ F Sbjct: 33 AKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSDARGDAATQVNQIQDF 92 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 +++ V AI P AT +K A A+IPV +DR+ + + + +D++ + Sbjct: 93 ISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGK---SFIASDSVAAAR 149 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 +G+++VKE GK + LQG +G + +DR+KGF +A+KNAP IK++ Q D+ + K Sbjct: 150 TLGNYVVKESGGK-GQLAILQGQIGTTPQVDRQKGFGQALKNAPGIKVVSQQPADWAQDK 208 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 V + ++A I +++ D M +GA QA+K +G K L DG K Sbjct: 209 AYSVSQDMLQAH---PGIDILWGQADAMALGAAQAVKASGSKKKH--LIVGFDGDIAGLK 263 Query: 256 AMMDGEANAS-VELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 A+ G +A+ V+ T M + + K +P + L D Sbjct: 264 AVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPAQQLQPAFLLTSKD 313 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 14/287 (4%) Query: 30 QVGSESGWRAAETNVAKSEAEKRGIT---LKIADGQQKQENQIKAVRSFVAQGVDAIFIA 86 + + ++ + EAE+ G T KI DG+ Q+ + V GVD I I Sbjct: 5 MSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGIIIE 64 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN 146 PV G +K+A+ + V +L++ I D++ T V ADN G + ++++++ Sbjct: 65 PVSTDGIVKAVKDAEKVGVKVVILNQRI--SDQNAADTFVGADNESTGAALMKKVMEDLD 122 Query: 147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA 206 GK N+VEL G +G+ + R KGF + P++K+I S S D+ +K + E+++ + Sbjct: 123 GK-GNIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENWLTS 181 Query: 207 ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 +I V A ND M +GA QAIKEAGL I +D D A+++G +V Sbjct: 182 ----SDIQAVVAQNDGMAVGAAQAIKEAGLT--DKIKVYGVDATSDGLNAIVNGGMTGTV 235 Query: 267 EL-TPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 T N + D ++P+++ T +Y + E L+K Sbjct: 236 SQGTENQGKISADLCSNLIYGQSVPKEVIATN-VVYTKENVNEILKK 281 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 14/298 (4%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRS 74 ++ +A AA L +GFSQV +S + A++ A+ G L D Q ++ Sbjct: 25 LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + + VD + I PV +P + A+ +PV +DRSI+ + DN+ G Sbjct: 85 LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSING---GGVTAHLGRDNVKMG 141 Query: 135 KLIGDWLVKEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 K +GD ++ E+ K V+E+QG G +V R+ GF +A+K KI+ ++ Sbjct: 142 KAVGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALK-GSGFKIVAGPYAEY 200 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 TR+ M+ ++A ++ +VYAHNDDM +GA++ + EAG KD+ +DG+ Sbjct: 201 TRANAVTAMQDLLQAH---PDVKVVYAHNDDMAMGALKVLAEAGK---KDVFVAGVDGLS 254 Query: 252 DIYKAMMDG-EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 + +M G + A+ P G + K G + E Sbjct: 255 EALASMAGGDQYVATALNDPRYLGDMTVQTARAIKAGKKVPAFVDAGTKAVTKANVGE 312 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 16/307 (5%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 A +GFS + + + A+++G L + + Q+ + ++Q Sbjct: 63 AAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLLSQ 122 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 GV A+ + P+ + P +++A IPVF LDR D + V +DN+ G+ Sbjct: 123 GVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDR---GSDGGKVTSFVASDNVALGQTAA 179 Query: 139 DWLVKEV----NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 W+ ++ NVV+L G VG + A DR+KGF++ I P+IK++ Q G F + Sbjct: 180 KWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQE 239 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD----ILTGSIDGV 250 K M + ++ I V+ NDD +GA +AI AG D IL DG Sbjct: 240 KSLNAMTNILQKY---PQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGT 296 Query: 251 PDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 A+ G+ +A++ P MA + + Y +P + L + Sbjct: 297 AQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAW-PTLLIDKSNIDSD 355 Query: 310 LEKKKNM 316 KK + Sbjct: 356 ATKKYGL 362 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 144/323 (44%), Gaps = 20/323 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALA---APLTVGFSQVGSESGWRAAETNVA-KSEAEKRGITL 56 M + +I+ +S +M + A + +G SQ WR N +++ + + + L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCC-GGVWREKVNNEMRQAQYQYKNVDL 59 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + + Q + + S +A+ VD I +AP P ++ A A IPV L DR + Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 Y ++ DN+ G+ + +L +++GK VVE+ G AS I+R +GF E +K Sbjct: 120 P---HYTASIGGDNVEAGREVARFLASKLDGK-GTVVEITGLKDASPVIERHRGFHEVMK 175 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 N P IK++ + ++ + +E+M+ ++ + V+ H+D IGA ++ Sbjct: 176 NYPGIKVV-TLESNWKLERAQELMKQYLDKGGHA---DGVFGHSDLGAIGAF--LEAERR 229 Query: 237 KPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 K +L IDG+P + + G+ AS + P + + G +K Sbjct: 230 GIDKQMLIVGIDGLPGEWEGVDRVKRGQFAASY-VYPTQGEKIMELAMNILQ-GKPYKKD 287 Query: 294 TLTKSTLYLPDTAKEELEKKKNM 316 + KS L P+ + +++ Sbjct: 288 NVMKSFLATPENCDAIALQYQDL 310 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 127/288 (44%), Gaps = 11/288 (3%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 V ++ + + N +A+ G+ ++ D + QI + ++ AI Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 + + T P +++A++A IPV +++R ++ + +D+ G++ G+++ Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPK----VIGSLSDDREAGRMQGEFMASH 185 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEA-IKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 + VV L G SVA+ R +GF EA + P++K++ S G +++++G + M + Sbjct: 186 L-PPNAKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLW 244 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 + + I V A ND+M +GAIQA+K A G L +D P A+ GE + Sbjct: 245 L---SFFPEINGVVAANDEMALGAIQALKAANRLNG--CLVTGVDATPAGLAAVEAGELS 299 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 +V+ L + G P + T + + ++ Sbjct: 300 QTVKQDAEGQAAGAVTLVQGFLSGKAPTESLDIPFTSITRENVAQFVK 347 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 134/312 (42%), Gaps = 13/312 (4%) Query: 6 LIVSAVSAAMSSMALAAP---LTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIADG 61 L ++ + A ++ A +G + + + + + A++ + L D Sbjct: 52 LFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVDA 111 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 ++ Q+ +++F+ Q VD I + PV +P+ + A I + L+R Sbjct: 112 KEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLPDG- 170 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 + V ++ + G+ + +G N+ + G + AI R +G + K P Sbjct: 171 -VAYVGSEELRFGEEQAKYAASHSDG--GNIGIIMGMMTVEAAILRTQGVEDFFKEKPEY 227 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 IIR Q+ + RS+G VME++I N+G + ++ ++NDDM +GAIQA++ AG D Sbjct: 228 NIIRKQTALWQRSQGMVVMENWI---NSGDKLDIIISNNDDMALGAIQALRAAGKL--DD 282 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 + +D PD A+ +G +A+V + T +K+T + L Sbjct: 283 TIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAALSGINKTPRDKITWIPAELV 342 Query: 302 LPDTAKEELEKK 313 D E K+ Sbjct: 343 TKDNLAEFEAKQ 354 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 12/290 (4%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 A +A L + ++ + AE A+++A++ G + Q + + + + + Sbjct: 24 AFSADL-IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGR 82 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G AI + A +K+AKDA IP FL+DR I+ + + + ++N +L Sbjct: 83 GAKAIILDNAGADASVAAVKKAKDAGIPSFLIDREINA--TGVAVAQIVSNNYQGAQLGA 140 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 VK + G+ N VEL G + A R +G+ + I + P++K + QS ++++++ Sbjct: 141 QEFVK-LMGEKGNYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYS 199 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 ME+ ++A +I V + ND M +GAI A++ AG KD++ DG D+ ++ Sbjct: 200 KMETILQAN---PDIKGVISGNDTMAMGAIAALQAAGR---KDVIVVGFDGSNDVRDSIK 253 Query: 259 DGEANASVELTPN-MAGPAFDALEKYKKDGTMP-EKLTLTKSTLYLPDTA 306 G A+V A A + + Y K+ T P E+ L L D A Sbjct: 254 SGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNA 303 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 138/303 (45%), Gaps = 13/303 (4%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIADGQQKQENQIKAV 72 +++ + +GF+ + ++ EAE+ + + D + + QI V Sbjct: 36 SVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQV 95 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDKSLYMTTVTADNI 131 +AQGVDAI PV E ++ A+ A +PV L++R ++ +D V +D++ Sbjct: 96 EDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERED-----AYVGSDSL 150 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 G + + + + GK + + G +G + I+R G + + P ++++ +G + Sbjct: 151 QAGTIQMEEVAAVLKGK-GKIAIMNGQMGHTAQINRTLGNKQVVDQYPGMEVVIEGTGGW 209 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 +R KGKE+MES+I++ G+ V A+ND+M IGAI A +EAG+ +++ IDG P Sbjct: 210 SREKGKELMESWIES---GQTFDAVVANNDEMAIGAIMAAEEAGIV--DELVFAGIDGTP 264 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 D M G+ SV G G EK+T E + Sbjct: 265 DALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESAEKMTNIPYETITKRNVDEYKK 324 Query: 312 KKK 314 K + Sbjct: 325 KWQ 327 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 80/299 (26%), Positives = 132/299 (44%), Gaps = 13/299 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQG 79 + T+GF + + + N + GI +I G E Q+ + ++V+QG Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---KDKSLYMTTVTADNILEGKL 136 VD I + P + G L+E + A IPV LD +D K + DN + G+L Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 +G+ V ++ C L+G G + DR GF + K + ++ Q ++ +G Sbjct: 199 VGEE-VAQMYPDGCKTAILRGVQGQTNDDDRYNGFLD--KAGDVVDLVAEQHANWETDQG 255 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 +++ I+A K++ ++Y ND M IGA QA+ EAGL I S DGV + + Sbjct: 256 YTAIQNIIQAN---KDLQVIYCENDLMGIGAYQAVDEAGLT--DQIKIFSYDGVTEGLQY 310 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKN 315 ++DG+ ++ P G A G E T L + AK+ LE+ K Sbjct: 311 VVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSENAKQTLEETKK 369 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 15/321 (4%) Query: 1 MWKRLLIVSAVSAAMS-SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M KRL+ + +S S++ A PL +GF+ + T K A+++G TL Sbjct: 1 MKKRLIGLLLAGVTISMSVSAAEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLITT 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D + QI V ++QG++ + + P + + AK A +P +LD I ++ Sbjct: 61 DARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALE-- 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 + +T V A+N LIG++ V + KP N + L G G V R+ F + A Sbjct: 119 APVITRVQANNAKNNNLIGEYAVGQFGDKPMNCIFLSGNQGNLVGQARRDNFLLGVAEAQ 178 Query: 180 -------NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 N+ + G++ + G + ME I A+ G I VY+ DDM +GAI+A+K Sbjct: 179 LRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQ--GDKINCVYSEMDDMALGAIRALK 236 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMA-GPAFDALEKYKKDGTMPE 291 A ++ + DG +A+ GE A+ P++ + + +Y+ T Sbjct: 237 AANK--LDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQAGQTSFP 294 Query: 292 KLTLTKSTLYLPDTAKEELEK 312 S L D + ++ Sbjct: 295 DYVYIPSILITKDNVDKYYKE 315 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 13/288 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 + +G S + E + + +A+ I D Q Q+ V+ F+ Q V Sbjct: 51 SGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQKV 110 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 DAI +AP + G P + AK A IPVF +D + + V DN GKL + Sbjct: 111 DAIVLAPTASAGIAPAVDLAKKAGIPVFTIDIKAEGD----VKSHVATDNYAGGKLAAKY 166 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 ++V V + + +DR+KGF +A+ PNIK++ ++ + K + Sbjct: 167 AAEKVLNGKGKVAIITYSE-VQSCVDREKGFKDALAEYPNIKVVDVENCSGSAEKAANLT 225 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD- 259 + + ++ +++A D +GA+ IK AG + DG P+ + + + Sbjct: 226 QDILLK---FPDLDLIFAVGDPFAVGAVSTIKAAGRN----VKVIGFDGNPEAIQEIKNH 278 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G A V P+ G L +G L T+ AK Sbjct: 279 GLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQVLIPPTIVDASNAK 326 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 88/306 (28%), Positives = 145/306 (47%), Gaps = 18/306 (5%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQ 63 LL++ V+ A S A +G SQ SE WR + EA + + I Sbjct: 12 LLVLWGVAVACSRR--EARFRIGVSQC-SEDEWRRQMNSEILREAHFYEDVEVDIRTAVD 68 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 + Q K +R +A+GVD + +AP AT PV++EA + IPV ++DR I Y Sbjct: 69 DNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSDK---YT 125 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN GK +G+++ ++G+ +VVE+ G VG++ A+DR +GF +AI P I++ Sbjct: 126 AYVGADNYEIGKAVGEYVANVLHGQ-GDVVEISGLVGSTPAVDRHQGFVKAISAYPGIRL 184 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 + + G + + K E M++ + + +I +VYA ND M GA A G + KD+ Sbjct: 185 LAVEDGAWLQLKAGEKMDTLL---SRFPHIDLVYAQNDRMAAGAYAAAAREGRE--KDMR 239 Query: 244 TGSIDGVPD---IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 ID + + ++ GE +A+ + P P + L +++ Sbjct: 240 FIGIDALSGKDYGVEKVLAGELDATF-IYPTGGDRVMQIAMDILNKRDFPRETIL-GTSV 297 Query: 301 YLPDTA 306 D A Sbjct: 298 VDRDNA 303 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 14/291 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 S ALA +T+G S + + + + A+ G+ L ++ Q QI V F Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + +GVDAI ++PV + G + +AK A IPV +D S + + V DN G+ Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVD---AHVATDNYYGGR 137 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + G+ + K +NGK V + V SV DR GF EA+ P I+I+ Q G TR + Sbjct: 138 IAGETMAKVLNGK-GQVAIIDYPVVQSV-RDRVAGFKEAVSKYPGIEIVAIQPG-ITRPE 194 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++ ++A + ++ DD + ++ A+K AG++ D+ DG+ + Sbjct: 195 ALNTAQNILQAH---PEVDGIFGFGDDAALASVVAVKSAGME--DDVKVIGFDGMEEARN 249 Query: 256 AMMDGE-ANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 A+ E A V P G + + K G EK L+ + Sbjct: 250 AVKKEESFVAVVCQYPGEMGRLGLETALRVIK-GEKVEKEIPVLPGLFTKE 299 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 140/322 (43%), Gaps = 20/322 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAA---------PLTVGFSQVGSESGWRAAETNVAKSEAEK 51 M K +++ ++ A+S+ A +A P+T+ S + ++EA+ Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 52 RG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 G + + +DGQ QI + + + QGVD I IAP AT PVL+ A I V + Sbjct: 61 LGNVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTI 120 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 170 DR ++ + V ADN++ + G+ V+++ + ++ LQG G A DR KG Sbjct: 121 DRPVNG--VPEVIANVAADNLIGAQRQGEA-VEKLFPQGATIINLQGIPGDKTANDRSKG 177 Query: 171 FAEAIKNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 + + P K + Q+ F R +G V E+ + N ++ A NDD +GA Q Sbjct: 178 VHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPP--TVIVAGNDDSALGAAQ 235 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGT 288 A++ GLK I DG D KA+ DG +V+ P G A L Y + G Sbjct: 236 AVEARGLKG--KIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIRTGA 293 Query: 289 MPEKL-TLTKSTLYLPDTAKEE 309 P + L + Sbjct: 294 RPATVDVLVSPVAITSKNLNDA 315 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 21/324 (6%) Query: 1 MWKRL--LIVSAVSAAMSSMALAA-PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK 57 M ++L +I A+ ++ A +G SQ SE WR + K E +L Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQC-SEDIWRDKLNDELKM-GEYLNDSLI 58 Query: 58 I--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 + A Q K V F+ +GVD + ++P + ++ A D IPV L DR + Sbjct: 59 VKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTN 118 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 Y + DN GK +G ++ +++ GK +VE+ G G+S A++R +GF +AI Sbjct: 119 SDK---YTAFIGCDNYTIGKSMGTFIAQQLQGK-GRIVEISGLEGSSPALERHRGFMDAI 174 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 K P ++++ S+ G++ G + M+ +K ++ V+AHND + GA A ++ Sbjct: 175 KPYPGLQVVASEEGNWKEEGGIQAMKRILK---QTQDFDYVFAHNDCLAWGAYVAARQ-- 229 Query: 236 LKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 ++ ++ +DG+ + + DG AS L P K K E+ Sbjct: 230 MRVKRNYKYTGVDGMATEGGGLELVRDGIFEASY-LYPTKGDEVIALAMKILKHQ-PYER 287 Query: 293 LTLTKSTLYLPDTAKEELEKKKNM 316 +++ A L + ++ Sbjct: 288 DNYLSTSIITQANAALTLMEARDT 311 >UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B51147 Length = 354 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 15/305 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQG 79 +T+GF+ ++ GW A AK A++ ++L +G QI + + + + Sbjct: 57 GKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQIETLINKK 116 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 VD + I P V +A ++ IPV LDR Y + DN G G Sbjct: 117 VDVLVILPADGKALTQVGLKAMESGIPVVNLDRVF--ASPQAYRCWIGGDNYGMGLNAGR 174 Query: 140 WLVKEVNGKP-CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 ++ +++ GK VVEL G + R GF +A+KN PNIK + Q+ +FT G+ Sbjct: 175 YIGEQLKGKKNAKVVELAGLDNLELTRQRTAGFDDALKNYPNIKKVGRQAAEFTVESGQS 234 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 M ++A + ++ H+DD +GA +AI++AG D L G A+ Sbjct: 235 KMAQLLQAHS---GFDALWNHDDDQGVGAERAIQQAGR---DDFLMVGGAGAKRAMDAIK 288 Query: 259 DGE--ANASVELTPNMAGPAFDALEKYKKD---GTMPEKLTLTKSTLYLPDTAKEELEKK 313 A+V P MA A D + G + E TLY KE +++ Sbjct: 289 ADNTVLKATVLYPPTMAASAIDLARALGQGNGVGGLAELEIPASLTLYSAVVTKENVDEY 348 Query: 314 KNMGY 318 G+ Sbjct: 349 LPTGF 353 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 15/313 (4%) Query: 4 RLLIVSAVSAAMSSMA---LAAPLTVGFSQVGSESGWRAAETNV-AKSEAEKRGITLKIA 59 +L + A+S A S A VG++ + + A N ++ + + + Sbjct: 6 KLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVNFS 65 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q+ + +F+AQ V+AI + PV G P +++A A IPV L ++ Sbjct: 66 DANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIAL----GIQSA 121 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 T V + NI G+L G+++ + + K ++ L+GT G S +RKKGF +A+ + Sbjct: 122 GGKYTFVGSKNIDAGRLQGEYMKEHL-PKGAKILYLEGTPGLSHTQERKKGFEDALGRS- 179 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 ++ + S S ++ R++G +V E +I++ + A ND M +GA++A++ A G Sbjct: 180 DVTTLASLSANYDRAEGMKVTEDWIQS---FPKFDAIVAANDQMALGALEALQGADRLKG 236 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 ++ +DG D A+ G + ++ A + + K G L Sbjct: 237 --VMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEKLVPFA 294 Query: 300 LYLPDTAKEELEK 312 D + +K Sbjct: 295 SITKDNVGQYAKK 307 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 135/303 (44%), Gaps = 15/303 (4%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ--KQENQI 69 S+A ++ T+GF + + + N AK EAE +G+ +++ G Q + Q+ Sbjct: 60 SSAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQL 119 Query: 70 KAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK---DKSLYMTTV 126 + + +A VD I + P + G E L + K+A IP+ LD + + + L + Sbjct: 120 GIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFY 179 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 +N KL G+++ K K L+G G + A DR GF E + + ++ Sbjct: 180 GTNNYEGAKLAGEYVAKNF-EKGTKTAILKGIEGQTNAADRYNGFIEGAGDT--VTVVAE 236 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q+ ++ +G ++ I A ++ + + ND+M IGA++AIKEA ++ + I Sbjct: 237 QTANWEVDQGYTAAQNIISAN---PDVELFFCCNDNMGIGALRAIKEANMQ--EQIQIIG 291 Query: 247 IDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 D V + + +GE A+V P G D + K G E T + + D Sbjct: 292 FDAVSEALNLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEA-ESYIDTGTEVITKDN 350 Query: 306 AKE 308 E Sbjct: 351 VGE 353 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 13/287 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + VGFS + + A+ +G+ L D Q K V F+ QGVD Sbjct: 58 EQIVVGFSNWSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVD 117 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I + P+ + + A IP+ D ++ D + + + +DN L G+L ++ Sbjct: 118 GIVLCPIDSNAAVTEAETINQAGIPLVTTDIAVAGGDVA---SHIASDNTLGGQLAAQFI 174 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGKEVM 200 +++ G V + + I+R+ GF + + P+I+I+ QSG+ R KG VM Sbjct: 175 GEQLGG-TGKVALIN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVM 232 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 E+ +++ ++ V+A ND M +GA+QA++ A DI+ D + K + +G Sbjct: 233 ENILQSN---PDVQGVFAVNDMMGLGALQAVQAAQR---DDIVIVGFDATEEAVKYIKEG 286 Query: 261 E-ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 ASV P G G EK L A Sbjct: 287 SALKASVAQNPVELGKTTMETMLKVIAGEQVEKNIPVPVELVTAGNA 333 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 15/310 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIA 59 ++ L + + A S +G SQ WR + + EA I L + Sbjct: 6 LYILLWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEIELVVM 65 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q + QI ++ F+ + VD + I+ PV EA A IP +LDR I+ + Sbjct: 66 DASQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKINSDE- 124 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Y T + ADN G+ IG ++ + G+ ++E+ G G+S A +R +GF +A+ P Sbjct: 125 --YTTYIGADNYEIGRSIGMYISSLIKGE-TTILEIWGRRGSSSATERHQGFVDAMSIDP 181 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 N+KI R G + + E +K ++ +++ +V+AHND M +GA +AI+E Sbjct: 182 NVKI-RELDGYWYKENAY---EEVLKLDS-IEDVDIVFAHNDMMALGAREAIEERDSSLV 236 Query: 240 KDILTGSID---GVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 + +D G +A+ G+ +AS P G A + +K L+ Sbjct: 237 GHVEFIGVDGLLGGGLGVEAVAQGKLDASF-YYPTGGGVAIKVAWQILSGQAYTKKYALS 295 Query: 297 KSTLYLPDTA 306 + + A Sbjct: 296 -TAMIDKTNA 304 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 139/330 (42%), Gaps = 30/330 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP---------------LTVGFSQVGSESGWRAAETNVA 45 M + L+ ++ M S V S + A Sbjct: 1 MKGKRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGA 60 Query: 46 KSEAEKRGITLKIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 A++ G+ +++ + + Q + + +GVDA+ +AP+ +A+ Sbjct: 61 NDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKE 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 +IPV L+D + K + V NI GKL G+++ K++ K + ++G G Sbjct: 121 KIPVVLIDTDANWDKKK---SFVGTGNIAAGKLGGEYISKKLK-KGDEAIIIRGVPGDRT 176 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 +R +G +A++ A IK++ Q + R K VME+ ++ NI V+ ND+M Sbjct: 177 QDERTQGAQKALEAA-GIKVVEIQPANSEREKAISVMENLLQTH---PNIKGVFCTNDEM 232 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEK 282 +GA++A+++AG K+I++ +DG PD K++ +G +V G + K Sbjct: 233 ALGAVKALQQAGK---KNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGKKGVETAVK 289 Query: 283 YKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + G E T +TL E+ K Sbjct: 290 VLR-GEKVETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 30/324 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAE----TNVAKSEAEKRGITL 56 M K L+ + + +S A VG + ++ GW K A + Sbjct: 1 MKKVLIFLLLIVTILSF----AKFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDVEF 56 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + ++ QI V++ +A+G+DA+ I P + P+ +A I ++DR I+ Sbjct: 57 YLVTAKE-PSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGINS 115 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 ++ Y + DN + G L G ++ +++ GK NVV ++G +++ +R + F +A++ Sbjct: 116 EE---YNVYIAGDNYMYGYLAGKYIAEKLGGK-GNVVVIEGIP-STINTERVEAFKKALE 170 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 PN+KII Q G ++R K E+M++ + NI V+ +DDM+ G + A+K+AG Sbjct: 171 PYPNVKIIAQQPGYWSREKAFEIMQTLLTK---FPNIDAVWTGDDDMLHGVLLALKQAGR 227 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDG------- 287 K+I+ +I K +MDG PNM A + K Sbjct: 228 D--KNIVLVGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQ 285 Query: 288 -TMPEKLTLTKSTLYLPDTAKEEL 310 +P K+ L+ T+ + AK+ Sbjct: 286 RGIPRKIILSTETV-TKENAKDYY 308 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 146/322 (45%), Gaps = 25/322 (7%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRA-----AETNVAKSEAEKRGITLKI 58 RL+ V + A + AA +G S ++ GW A A A +A+++ I + Sbjct: 9 RLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDIEFFV 68 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 Q+ V + +G+DA+ I P + V++EA D I ++DR + Sbjct: 69 V-ASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDRELAHPA 127 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 +++ + DN G++ WL KE++GK NVV ++G + R F + I Sbjct: 128 QNV---FIAGDNAGLGRVGAQWLAKEMSGK-GNVVVIEGLQ-IPINKQRVDAFNDVIAGY 182 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 PNIKI+ SQ GD++ K VME+F++ I V+ +DDM+ G ++AI+E+G Sbjct: 183 PNIKILDSQPGDWSTQKALSVMENFLQKH---PKIDAVWCQDDDMLKGVLKAIEESGRTD 239 Query: 239 GKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTM------P 290 K +L G+ G DI + + G A+V +P+M K + P Sbjct: 240 IKTVLGGA--GSKDIIEMIQSGNKMVRATVTYSPSMIASGIALAVHGVKHEKLGYLYHEP 297 Query: 291 EKLTLTKSTLYLPDTAKEELEK 312 ++ L + L + A + K Sbjct: 298 SRVIL-GADLVTKENAADYYFK 318 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 142/313 (45%), Gaps = 18/313 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAA---PLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLK 57 + +LL+ +S S + + VGFSQ + WR K EA I L+ Sbjct: 3 YLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDIILE 62 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 I D + NQ+ + F+ GVD + ++P+ + P +++A A IP ++DR I+ + Sbjct: 63 IKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIEGQ 122 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + V A+NI G+ +++ +GK +++E+ G G+S A +R GF + + + Sbjct: 123 N---FTAYVGANNIEIGRNAAKYILSHSSGK-ADIIEITGQEGSSPAYERSMGFKKTLDS 178 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 P +K+ GD+ ++ + + + ++ K ++AHND M +GA + + L+ Sbjct: 179 VPELKVRHVIKGDWEKTSIQSKLSDLL---DSVKAPDYIFAHNDRMALGAWEVARSKSLE 235 Query: 238 PGKDILTGSIDGV---PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 ++I +DGV + + D NA++ L P E +G K Sbjct: 236 --EEINIIGVDGVFGPNGGIQLVKDNILNATI-LYPTGGMETIKLAEDIL-NGENVNKNN 291 Query: 295 LTKSTLYLPDTAK 307 + ++ + Sbjct: 292 ILRTVIIDSVNVD 304 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 31/332 (9%) Query: 1 MWKRLLIVSAVSAAMSS-----------------MALAAPLTVGFSQVGSESGWRAAETN 43 M RL I A + + A+ T+G S + ++ + + Sbjct: 1 MKHRLFIALACLLTVFAGCNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGD 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 SE +KRG + G + Q ++ F+ + V AI ++P + PV++EA A Sbjct: 61 NIVSEGKKRGYDAVVVSGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAA 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 IPVF +D + T + DN GK +++ + + L A Sbjct: 121 GIPVFTVDIPC-HEPGVKIATQIATDNYGGGKEAAKAMIEALGEAGGKIAILHFKQ-AES 178 Query: 164 AIDRKKGFAEAIKNA-----PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 R KGF E I + I+ + +G + E ++A ++ ++A Sbjct: 179 CQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQAN---PDLHGIFA 235 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAF 277 ND +GA A+++AG ++ DG P+ +A+ +G+ A P+ G Sbjct: 236 INDPAALGARAALEKAGKT--DQVVIVGFDGQPEGKQAIKEGKIYADPIQFPDKMGAQIV 293 Query: 278 DALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 DA+ + K T+P ++ L ++LY A+++ Sbjct: 294 DAIIQQSKGETLPPQM-LIPTSLYKKADAEKD 324 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 138/307 (44%), Gaps = 9/307 (2%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K+++++ ++S A + VG S + + + A++ +TL+ D Sbjct: 1 MKKIILLCLTLLSLSPSVFA--IQVGVSIAQMDDVFLSRLRGYLIEHAKQYPDMTLQFED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 GQ + Q+ V+SF+ VD I + PV G + + A+ A++P+ L+R Sbjct: 59 GQGAVDKQLSQVQSFINGKVDVIIVNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKMG 118 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNG-KPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ + +D I G+L +L V K N+ ++G + R +G E I P Sbjct: 119 DGISYIGSDEIEAGRLQMGYLADMVKDRKNVNIAIMKGLLSNDATRFRTQGAKEVIAKHP 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 N+ ++ + + R G +M ++I G+ I ++ A+ D+M IGA AIK GL G Sbjct: 179 NMHVVMEDTAKWMREDGMNLMNNWILT---GQKIDILSANADEMAIGAAMAIKSNGLNIG 235 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKS 298 KDIL G DG P+ +A+ G +V A A D EK K T+ + + Sbjct: 236 KDILVGGTDGGPNGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKD-INFIPF 294 Query: 299 TLYLPDT 305 L P Sbjct: 295 QLVTPQN 301 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 27/330 (8%) Query: 1 MWKRLLIVSAVSAAMSSMA---LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR--GIT 55 + +R+LI+SA A + + A A + +GFSQ S S R T ++ A + + Sbjct: 4 ITRRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDVD 63 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 L + + + K QI V S + QG+ + I+ + P +K+ A IPV L+RS+D Sbjct: 64 LIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERSLD 123 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + V N G L G ++ + + GK NVVE++G + A++R +GFAEAI Sbjct: 124 IP----VTLHVGPHNKPIGTLAGKYIAEALKGK-GNVVEIKGDPAVAPAVERHEGFAEAI 178 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 IK+I D+ + K + ME ++ G+ I VYAHND+M GA++AI+ AG Sbjct: 179 AGT-EIKVIAETHADWDQEKALKFMEDTLQRFPAGQ-IQAVYAHNDNMAFGALRAIQAAG 236 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKD--------G 287 + IL IDG +A+ G+ A+ + +A A + G Sbjct: 237 RDK-EGILIIGIDGENAAIRAVAKGDLTATFTYS-TVAPEGVIAAHALATNDTAALEKLG 294 Query: 288 TMPEK-----LTLTKSTLYLPDTAKEELEK 312 T+ +K S + + A E K Sbjct: 295 TLTKKDDGSMEIEIASKMITKENAAEFFCK 324 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 13/296 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPL-TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 + K + SA+ +A+ ++A AA + + + + A+ A+++ I L + Sbjct: 5 LLKNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQ 64 Query: 60 DGQQKQENQ--IKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 +++ + + V + +A+ VDAI + P + + P ++A+ A IP+ LD +D K Sbjct: 65 VAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAK 124 Query: 118 DK---SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 L V DN G L L + + GK NV L+G G RK G +A Sbjct: 125 AAEAAGLKFNYVGVDNFNGGYLEAKNLAEAI-GKKGNVAILEGIPGVDNGEQRKGGALKA 183 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 P+IKI+ SQS ++ + V + + A NI ++A ND+M IGA+ A++ A Sbjct: 184 FAEYPDIKIVASQSANWETEQALTVTTNILTAN---PNINGIFAANDNMAIGAVTAVENA 240 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTM 289 GL +L DG+P + + G+ +++ P A + K + Sbjct: 241 GLAG--KVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 122/297 (41%), Gaps = 15/297 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +GFSQ + WR A + + E A L D Q+K + + G+ Sbjct: 25 YVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIEELLRNGIHL 84 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + ++P + PV+++A +PV ++DR Y V DN GK +G++ Sbjct: 85 LIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSP---YYTAYVGGDNYQVGKTVGEYAA 141 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 + G ++E+ G +S A DR +G +A+ P+I+ + + +G + + K + Sbjct: 142 ALLGG-NGKMIEITGLPRSSPASDRHRGLVDALATRPSIRRVATLNGQWQKDIAKSELRK 200 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI---YKAMMD 259 + ++ +++A N+ M +GA + + + P + I +DG+P + + D Sbjct: 201 VL---PRFPDLDLIFAQNEVMAMGAREVCND--IFPDRKIRVIGVDGLPGQFGDIQMVYD 255 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNM 316 G A+ L P A + +K L ++ + + + M Sbjct: 256 GHITAT-ALYPTGGEEAARVAMNILQ-KQPYQKENLLQTAIIDSSNVRMIKMQTDKM 310 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 15/297 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +G SQ + W A + A + I ++ D +Q QI V +F+++G+D Sbjct: 42 WRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDARQNNAQQIADVEAFLSKGIDL 101 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW-- 140 + I+P A+ P++ A IPV +LDR + + Y + ADN L G+ G++ Sbjct: 102 LIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ---YTMWIGADNRLIGRKAGEYTA 158 Query: 141 -LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 +E PC V+EL+G G++ +R GF E I P+++II SQ+ D+ + + Sbjct: 159 RWCREQQRSPCTVIELRGLEGSTPTQERGDGFREGIAANPDVRIIASQNADWLAERADAL 218 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDG---VPDIYKA 256 +A ++ +VYAHND M I A KE G IL ID +A Sbjct: 219 ARVLFEAN---PDVDVVYAHNDPMGIAAFNVAKEQGRDT-DAILFIGIDALATSDGGIQA 274 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + G+ N + + P A + + + P + + + A +K Sbjct: 275 VRQGKLNVTY-VYPTGGAEAIEWALRILEQRETPPREIILDTEEVTTANADAMFQKY 330 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 132/308 (42%), Gaps = 7/308 (2%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 L + S A SS A +G + + A T+ K A+++G+ L I D ++ Sbjct: 21 LTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKKD 80 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 +++ V + + VDA+ + P+ + K A IP+F+L Y + Sbjct: 81 VGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKS 140 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + D+ + G++ ++ + ++ N+V G GAS RK GF + I N KI+ Sbjct: 141 YIGVDDTVAGQMQAEY-LNKLMPNGGNLVFAAGVYGASWTDRRKNGFDKTINE--NFKIV 197 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 +R K ME ++ +G+ I V A+ND+M IGA AI +AG + Sbjct: 198 AEFQAKGSRDDAKRNMEDTLQRFPSGQ-IDAVVANNDEMAIGAASAIADAGRTA-EFKAV 255 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 +DG + + G +A+V G A + + + G + + TL TL Sbjct: 256 VGVDGTEPALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTL-PFTLITK 314 Query: 304 DTAKEELE 311 D E L+ Sbjct: 315 DNLSEFLK 322 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 118/283 (41%), Gaps = 13/283 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 TVG S + + + + + KSE K G +++ G+ Q V+ F+ G AI Sbjct: 52 TVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQVKDFIVAGHAAIV 111 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 + P + G P ++EA A IPVF D + + + ++ + DN+ GK + +++ Sbjct: 112 LCPCDSRGIGPAIQEATAAGIPVFTADIAC-LAPGAEVVSHIATDNLGGGKQAAEAMIEA 170 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA------PNIKIIRSQSGDFTRSKGKE 198 V VV L A I R +GF E I I I+ GD + K + Sbjct: 171 VGSAGGKVVILDFKA-AESCILRVQGFKEVIDKHNSENPSSAITIVSELPGDGQKDKSYK 229 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 E ++A ++ ++A ND +GA A+++A + DG PD +A+ Sbjct: 230 AAEDALQAH---PDLAGIFAINDPSALGARAALEKANKA--DQVKIVGFDGQPDGMQAID 284 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 +G+ A P+ G A G K L + LY Sbjct: 285 EGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKEQLIPTGLY 327 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 16/313 (5%) Query: 2 WKRLLIVSAVSAAMSSMA----LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK 57 K L+ S ++AA+ SMA A+ + ++ + AE AK++A + G T Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 +A Q + + + +A+ AI + + LK+AK A IP FL+DR I+ Sbjct: 61 VASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREIN-- 118 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + ++ + ++N +L + V + GK +EL G + A R +G+ + I Sbjct: 119 ETGIAVSQIVSNNYQGAQLGAEKFVTLMGGK-GKYIELLGRESDTNAHVRSQGYHDVIDE 177 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 ++K++ Q+ ++++++ MES ++A +I V + ND M +GA A+K AG Sbjct: 178 HSDMKMVAQQTANWSQTEAFNRMESILQAN---PDITGVISGNDTMALGAEAALKAAGRN 234 Query: 238 PGKDILTGSIDGVPDIYKAMM-DGEANASVELT-PNMAGPAFDALEKYKKDGTM-PEKLT 294 D++ DG + +++ +G A+V A A ++Y K G E+ Sbjct: 235 ---DVVVVGFDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTGLEEKQ 291 Query: 295 LTKSTLYLPDTAK 307 L L + AK Sbjct: 292 LMDCVLIDENNAK 304 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 20/319 (6%) Query: 6 LIVSAVSAAMSSMALAA-PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA--DGQ 62 L V+ + A +++ A +G+ + + + A++ ++ + G T Sbjct: 61 LPVTGIGAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTA 120 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY 122 E Q++ + + + Q VDAI + + G +++A+DA + V + +D L Sbjct: 121 DSVEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPA-AEDTFLR 179 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 D G + + ++ GK + L+G GAS AI+R G + I+ Sbjct: 180 T---GVDYYESGYTMAKAVADKLGGK-GKFIILEGPAGASNAIERLNGINTGLSEYEGIE 235 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 I+ SQ+ +F R++G V E+ I+ +I V A ND+ +GA+QA+ A + D+ Sbjct: 236 IVASQTANFKRTEGMSVTENLIQQYT---DIDAVIACNDESALGAVQALTAANMS---DV 289 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPEKLTL-----T 296 L DG D A+ +G A+ P +G A KY D T PE + Sbjct: 290 LVCGFDGSVDATNAVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPTAA 349 Query: 297 KSTLYLPDTAKEELEKKKN 315 L + DT + ++ Sbjct: 350 NDPLVIADTVQNYIDNIAW 368 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 15/298 (5%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADGQQ--KQENQIK 70 ++ A TVG + + A++ AE+RG L Q E+QI Sbjct: 54 SVGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQIN 113 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---KDKSLYMTTVT 127 AV +F+ QGVDAI +AP + L+ A +A I V D ++D + + + + V Sbjct: 114 AVENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVG 173 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 DN + ++ G+ L + + G+ VV ++G GA A R+ GF +AI ++++ S+ Sbjct: 174 PDNRMGAEMAGNALGEAL-GEGGRVVIIEGNPGADNATQRRLGFEDAIATH-GLELLESR 231 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 + + + +V + + A ++ V A ND M IG I+A+ AG DIL Sbjct: 232 TAHWETEEANQVFAAMLTAH---PDLQGVMAANDSMAIGVIEALDAAGR---DDILVVGF 285 Query: 248 DGVPDIYKAMMDGEANASVELT-PNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 D VP + + DG A+V+ MA A D + + G E T L + Sbjct: 286 DAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPIELVTAN 343 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 136/295 (46%), Gaps = 6/295 (2%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRS 74 + +A AA +G ++ + + + + + +GQ E Q++ R+ Sbjct: 15 FAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQVALLDADIFMENGQDDVELQMRQFRN 74 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 V VDAI +A V +++ A +A++P+ ++R+ + V +D + G Sbjct: 75 LVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNPEPATWPALTAFVGSDELESG 134 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 L + L + N K NVV L G ++ R + + + P++K+++ + G++ RS Sbjct: 135 TLQMEELARRANYK-GNVVILVGDPSNKSSVMRTEDVEKVVAKYPDMKVVQKKIGNWERS 193 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 + ++ ++K G + ++ A+ND+M IGAI +++ G K G D L G IDG PD Sbjct: 194 QAATIVIEWVK---QGVDFSIIAANNDEMAIGAIMGLEKTGKKAG-DYLVGGIDGTPDGL 249 Query: 255 KAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 K M +G+ SV A A DA + + T+ + L P+ ++ Sbjct: 250 KLMAEGKMAVSVFQDALGQANGAVDAAMRMARGETLASPVIWVPFKLITPENRQQ 304 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 16/321 (4%) Query: 1 MWKRLLIVSAVSAAM-------SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK-R 52 ++ L IV + ++ + + +G SQ WR + +EA+K + Sbjct: 11 IFLSLAIVFLILFSLIIIENIRMKNSDSVEYVIGMSQANLYEPWRISMNEEISNEAKKYK 70 Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 I + D Q K + + G+D + ++ + PV+ +A + +PV +LDR Sbjct: 71 NIKIVYKDAGGDTNKQKKDIDELLNSGIDLLIVSINDSEKLTPVVSKAYKS-VPVVVLDR 129 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 +++ + S+Y + DN G+ G +V + V+E+QG + + IDR KGF Sbjct: 130 AVEGYNYSVY---IGPDNEKIGREAGKMVVDLLGNSEGRVIEIQGLLNSHPDIDRSKGFR 186 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EAIK NIKI+R+ G++ + + ++ +E +K + NI +++AHND M +GA +A Sbjct: 187 EAIKQCDNIKIVRTVIGEWQKDEAEDKIEELLKEDR---NIDIIFAHNDYMALGAYKAAY 243 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 + G+ K I + G + G + + A D+ K Sbjct: 244 KLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFTCS-TGGKEAVDSALNILNKKKKIPK 302 Query: 293 LTLTKSTLYLPDTAKEELEKK 313 + KS E L K Sbjct: 303 KIVLKSDKITKSNVNEYLNDK 323 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 10/288 (3%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIA 86 G S + + K E E G L I D Q Q + + Q V IF+ Sbjct: 43 GASFQTMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKNDLSDLILQNVAGIFVN 102 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN 146 PV G + L EA ++P+ ++D + D+ L + TV +DN+ G+L L K VN Sbjct: 103 PVNWEGLKGSLLEANRKKVPIIIVDAPVKKADEELIVCTVASDNVRAGELAAQALAK-VN 161 Query: 147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA 206 K VV IDR GF ++ P +KI+ Q T + VM I Sbjct: 162 PKARLVVL--HLSVNKACIDRVAGFKTELEKHPEMKILDVQEAQGTTEGARPVMRDLIGR 219 Query: 207 ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 ++ V+A ND +G I A+ A + ++DG KA+ G+ +++ Sbjct: 220 Y---PDLDAVFAINDPNALGVISALDSANK--LDQVTIVTVDGSQAGIKAIQAGKLHSTS 274 Query: 267 ELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 P G A + + + K G EK + L + A++ LE + Sbjct: 275 AQFPREIGKIAAEKMLAHLK-GEPVEKDVKVRVELITAENAEQYLEPQ 321 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 113/290 (38%), Gaps = 12/290 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 G++ + + + ++E EK G L D QI + + QGV Sbjct: 38 KKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQGV 97 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 +A+F+ PV G P L+ K A IP+ D + KD + V +DN GK+ GD Sbjct: 98 EAVFLNPVDWEGVRPGLEALKKANIPIINFDTEV--KDMNYVTAYVGSDNKNAGKVCGDD 155 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 LVK + L S+ DR GF AI N I+ Q G ++ Sbjct: 156 LVKRY-PNGGKIAILNCPTMNSIN-DRIAGFKSAI-EGKNFTIVAEQDGKGDLQTSMKLA 212 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD- 259 + +++ + +I + ND +GA+ A K A IL +DG PD K + Sbjct: 213 DDILQSHS---DIVAIMGGNDPTALGALAACKSA---KQSKILIYGVDGSPDAKKEIASG 266 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 G+ + +P G L + EK T ++ L D + Sbjct: 267 GQFVGTGAQSPKQIGVKSAELGYKVLNKQNVEKKTPVQTFLINKDNVSKY 316 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 125/310 (40%), Gaps = 15/310 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++ PL +G+S ++ + + ++ AE+ GI + IAD + Q+ Q+ Sbjct: 32 TTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVIADQKSSQQEQVSGSLDL 91 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + QG+ A+ I PV + + A +IPV + D + Y + ++N G+ Sbjct: 92 INQGISALIITPVQPSALPSTIDAAHGEKIPVVVADIGTEGD----YDGYILSNNYEGGR 147 Query: 136 LIGDWLVKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 L + +V+++ G P V ++ G+ V +R GF + + N +I+ S G+ T Sbjct: 148 LAAEHVVEKLGGTPGPHQVGVIELHAGSVVGEERVSGFVDRLGEEENFEIVSSLDGNDTV 207 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 G + + A + ++YA NDD +GA +A++ AG+ DG Sbjct: 208 DGGFTAAQDMLSAN---PELDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDPA 264 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP------EKLTLTKSTLYLPDTAK 307 + G + +V P G +G P K + + Sbjct: 265 LDLIEQGVMSGTVAQDPFGQGQKAVETALALLNGEDPGYSDEATKTIYFPVEMVTAENVA 324 Query: 308 EELEKKKNMG 317 E +++ G Sbjct: 325 EFRASRESQG 334 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 13/307 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQ 62 R+L V ++ + ++A A + F+Q + +R A+ + E A ++ +D Q Sbjct: 5 RMLRVLLLAFCLPAVA-AENKVIAFAQDTMANDFRRAQVYEVRDEVARYPQLSFVYSDAQ 63 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY 122 + I+ + F+ Q VD + + PV+ +A A IPV +LDR I+ K + Sbjct: 64 GQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQ---F 120 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 + + +DNI G++ +++ +NGK V+ +G A V R KGF I I+ Sbjct: 121 TSFINSDNIRIGEIGAEYIASRLNGKGL-VLLFEGLQKADVTQLRSKGFLTEIGKHSGIR 179 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 +IR +G++ R ME + ++G + +++ +D M+ G + ++ + P + + Sbjct: 180 VIRR-TGNYLRKDAVVEMEKLV---SDGIRVDAIFSESDSMLSGVRMVLSKSNIDP-RSV 234 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 + D + +A+ DG + SV L P A + K ++P K L Sbjct: 235 VMVGCDYTSEARQAIRDGTQSGSV-LFPLGGKKAVEIALKIFAGESVP-KHIYNPVKLVT 292 Query: 303 PDTAKEE 309 D ++ Sbjct: 293 KDNVEQV 299 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 132/316 (41%), Gaps = 19/316 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLT-VGFSQVGSESGWRAAETNVAKSEAEKRG--ITLK 57 M K+LL+ SA+ A A L VG S + + A + A+++A++ + + Sbjct: 23 MIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVI 82 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 D Q + +F+A GVD I +A P +K A++A I V D + Sbjct: 83 TVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGA 142 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 D TV +N+ G++ ++V ++ ++ G +S+ IDR G +++ N Sbjct: 143 D-----ATVQTNNVQAGEIACQYIVDKLGAAGGQIIIQNGPQISSI-IDRVSGCRKSLAN 196 Query: 178 APNIKII-RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P I I+ Q+G +R +G ++M+ + I V+ D G+ A ++ G Sbjct: 197 NPKITILSDDQNGKCSRDEGMKIMQGHLTRHR---KIDAVFTVCDPQATGSDLAAQQFGR 253 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTMPE-KL 293 + S+DG PDI KA G AS P + +G P+ + Sbjct: 254 N---EFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKKPDNPM 310 Query: 294 TLTKSTLYLPDTAKEE 309 L STL D + Sbjct: 311 ILMPSTLLTKDNVADY 326 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 15/319 (4%) Query: 1 MWKRLLIVSAVSA---AMSSMALAAPLTV-GFSQVGSESGWRAAETNVAKSEAEKRGITL 56 M + L+++A++ ++S A A + + + + E +A+ AEK G Sbjct: 3 MKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEA 62 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 ++ + + + + + + +AI + P A G +++A +A IPVF+++ I+ Sbjct: 63 DVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEIN- 121 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + L + ++N L +K V G VEL+G + A R G+ + Sbjct: 122 -QQGLAEAQLVSNNAQGAALGAQQWIKSV-GDSARYVELKGAPSDNNAATRSNGYETVLS 179 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P ++ + S ++ R++G +S ++A +I V + ND+M +GAI A+KEAG Sbjct: 180 QYPGLEKVGSDVANWDRTQGFNKTQSMLQAN---PDIDGVISGNDEMALGAISALKEAGK 236 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELT-PNMAGPAFDALEKYKKDGT--MPEKL 293 D++ G DG PD +A+ GE + +V + A +KY G + + Sbjct: 237 --LDDVVVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEK 294 Query: 294 TLTKSTLYLPDTAKEELEK 312 L L D + + Sbjct: 295 QLFDCFLITSDNVDDYTDP 313 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 12/286 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 GF+ + + A + ++ G L + D Q + QI V + QG+D + Sbjct: 68 YKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQGIDLL 127 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 F+ P+ + + L++ A +PV D DV D L T + +DN G+L+ + ++K Sbjct: 128 FLCPIDSASIKSSLEQCGKAGVPVVNFDT--DVYDVDLVNTIIVSDNYYAGELVAEDMMK 185 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 ++ + V + + A I R+ GF + KI+ G + + E Sbjct: 186 KL--PEGSKVCILTSPSAEACIKRQNGFKDKADGY--FKIVSEIDGKGDTATSLGIAEDV 241 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 ++ ++ YA ND IG +QA++ D+L +DG P +A+ +G Sbjct: 242 LQGN---PDLGAFYAINDPSAIGCVQALESQ---KKTDVLVYGVDGQPMGKQAISEGTME 295 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 A+ +P G A G EK L + L + E Sbjct: 296 ATAAQSPINIGKESVAAAYKILSGESVEKNILVPTFLIDKNNVTEY 341 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 16/295 (5%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG--ITLKIADGQQKQENQIKAVRSFVAQ 78 P V ++ + + N K E+ I + D +Q QI V + + Sbjct: 64 GEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILN 123 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G AI V A EP+++ K+A +P+ +R + D + V AD + G L+ Sbjct: 124 GTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFENCD-----SFVGADGAVAGSLLA 178 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFTRSKGK 197 + ++ GK NV + G +G R+ E + P+++++ +GD+ R K Sbjct: 179 RFTGEKTGGK-GNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWKRDKAL 237 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 +++E+++++ G +I + NDDM +G A+++AG DI+ ++G PD A+ Sbjct: 238 QLVETWLQS---GTDIDAILCLNDDMAMGTQLAVEQAGKS--DDIIVCGVNGDPDGINAV 292 Query: 258 MDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 DG+ A+V P+ A A +A +Y G PE + L D + ++ Sbjct: 293 RDGKIAATVFQNPDRQAEEALEAALQYI-HGEKPESKIMIPFELVTADNVDDYVQ 346 >UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_BACFN Length = 917 Score = 207 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 20/322 (6%) Query: 5 LLIVSAVSAAMSSMALA----APLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIA 59 L+ + +S +SS +GFSQ S+S WR A + EA R + L + Sbjct: 11 FLLFAGLSIFLSSCQPKEEGDKKYVIGFSQCTSDS-WREAVLLEMQIEASNYRNVELVVY 69 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 + Q+ +R ++Q VD + I+P A V EA IP + DR I + Sbjct: 70 NAMDNSSRQVSQIRKLISQNVDVLIISPNEAVPITDVAVEAYRKGIPTIIHDRKIQSDE- 128 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Y ++ A+N G IG+++ ++ ++E+ G G+S A++R GF + +++ Sbjct: 129 --YTVSIGANNYNIGSAIGEYINGQLPPNS-KILEIWGLEGSSPAMERHDGFIDHLRSDK 185 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 N + + G + + + + +I +VYAHND M + A I + G Sbjct: 186 NFQ-VTQVFGKWHYNSAYDAVNRL----ATFADIDLVYAHNDVMALAARDVIMKRDSVSG 240 Query: 240 KDILTGSIDGV---PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 K I IDGV +A+ D + AS P + + +G +K + Sbjct: 241 KRIRFIGIDGVYGDGAGLQAVADEKLEASF-QYPTGGAISIQVAMQII-NGEKVKKNYVL 298 Query: 297 KSTLYLPDTAKEELEKKKNMGY 318 + + AK L + + + + Sbjct: 299 NTAIINRGNAKTILAQSEQLNH 320 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 25/326 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALA----------------APLTVGFSQVGSESGWRAAETNV 44 M K + + + + MS A +G G G+ A Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPV-GYFVAVREG 59 Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A + + + +D Q+ V +++ VD I IA V + + ++ A +A Sbjct: 60 IDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEAN 119 Query: 105 IPVFLLDRSIDVKDKSLY---MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 IP+ +I K+ Y +T V + + GKL G+ + K VV ++G G Sbjct: 120 IPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVLIEGRPGT 179 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 S I+R+KG EA+ N +++ +Q+ ++ + + +++E I+ I ++ A +D Sbjct: 180 SPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQT---IDVIIAQDD 236 Query: 222 DMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALE 281 + IGA A+KEA LK IL + G + A+ G + + ++ G Sbjct: 237 NSAIGAGMALKEANLK--DKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAITAA 294 Query: 282 KYKKDGTMPEKLTLTKSTLYLPDTAK 307 +G E +T K + Sbjct: 295 VKYLNGEKVEPVTQMKQVEVNKSNVE 320 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 A LT+G + ++ + ++E + RG+ + D Q Q+ + + + Sbjct: 25 WAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLITRQ 84 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 +DA+ P AT +K AK A IPV +DR+ T + +D++ K + + Sbjct: 85 IDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGD---TFIASDSVAGAKALAE 141 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 ++ K +GK + LQG +G + DR KGF E +K P +K++ Q ++ + KG V Sbjct: 142 YVGKVTDGK-GRIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAV 200 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 + ++ + NI + + D M +GA QA+K A L ++ KA+ Sbjct: 201 AQDLLQRD---PNITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDG--DVAGLKAVAS 255 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 G A++ G A K G K L ++ L D L++ Sbjct: 256 GVLQATMTQQTQKMGRMAVASALDLKAGKAVPKEQLLETVLTTKDNVAPFLQQ 308 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 16/303 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK--IA 59 +L V +A +++ A AA T+ + + A++ A+ G + I Sbjct: 3 KLKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHYIP 62 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL-DRSIDVKD 118 Q+ + + + AI PV P +++ DA+IPV + DRS K Sbjct: 63 TKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDRSAGGK- 121 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 ++ V AD+ G G +L+KE+ GK NVV L+G G+ +DR +GF +A+K Sbjct: 122 ---FLAFVGADDYSLGLETGRYLLKEMGGK-GNVVILEGVKGSLTNVDRVRGFNDALKEF 177 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 ++K++ SQ ++ R +G +VME+ +++ I V A ND M IGAI+A+ A K Sbjct: 178 KDVKLLASQPANYQRLQGLQVMENLMQSH---PQIDGVLAANDAMAIGAIEALDGANRKA 234 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPEKLTLTK 297 I+G + A+ G+ AS + + G + + T+ ++ L Sbjct: 235 ----KVVGINGTKEAVDAIKSGKLLASGDYNGFLQGCIGTMVAIRALRKETIVNEVVLKP 290 Query: 298 STL 300 + + Sbjct: 291 TVV 293 >UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA89_MAGSM Length = 374 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 13/304 (4%) Query: 7 IVSAVSAAMSSMALAA--PLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQ 63 IV A++ +A A P VGF Q + WRAA+ + + + ++D + Sbjct: 75 IVMMTLYALAGLAHAQQPPWRVGFCQDTLDIPWRAAQAMTFSQTLQTDKRFQVILSDAKG 134 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 Q + V +GV + +P PV+ +PV LL R ++ + Sbjct: 135 NTTQQAIDLEHMVERGVHVLVTSPRDGAVLTPVISNIYRQGVPVVLLSRRTLDEN---FT 191 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 T + D+ G+ +L K +N K ++ +QG AS R GF + + P+++I Sbjct: 192 TFIAPDDAEIGRQAARYLSKRLNEK-GKILVIQGLGSASTTQQRTVGFIQELSLHPHMQI 250 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 + ++ + +MES + + +Y H+D M +GAI A+K AG+ P K + Sbjct: 251 VAQPFANYKKEMAILIMESILAQKLP---FDAIYVHSDAMALGAILALKRAGIDPTK-LP 306 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 SID +++ GE +A + PN A+++ G K STL Sbjct: 307 IVSIDYTRAGRESLRKGEIDA-IFTYPNGVKQGITAVKRILA-GQPVNKFQTVPSTLVTQ 364 Query: 304 DTAK 307 + Sbjct: 365 ENIN 368 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 137/334 (41%), Gaps = 32/334 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPL----------------------TVGFSQVGSESGWR 38 M K+ ++ AV +M MA A V + ++ + Sbjct: 1 MMKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFM 60 Query: 39 AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 98 K E G +++ D Q+ + + +++ +AI + P G LK Sbjct: 61 VGMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLK 120 Query: 99 EAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGT 158 EA DA IPVF++ ++ D L + + D G+L + ++K+ G+ + + GT Sbjct: 121 EAHDAGIPVFVIHNNVSATD--LVTSLIHVDVRQGGELKMEQVIKDC-GEDAKIAIMTGT 177 Query: 159 VGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 +G G+ ++ PN++++ +G++ + + E+++ + GK I + Sbjct: 178 LGQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLAS---GKEIDAIVC 234 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPN-MAGPAF 277 +ND M +G + +K AG + I +D + KA+ GE A++ + AF Sbjct: 235 NNDGMALGVVSVLKSAGKS--EQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAEIEKAF 292 Query: 278 DALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 + LE K G + S L + KE ++ Sbjct: 293 EMLED-LKAGKKVDAEYKVPSVLVTKENVKEYMK 325 >UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMU2_9FIRM Length = 369 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 140/313 (44%), Gaps = 21/313 (6%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 + + ++ + A E AK A G++ + Q++ ++ ++AQ Sbjct: 49 GSDYHLAICIHSMDNEYWAQEAEGAKLAAASYGVSADVLTCDSDDNKQLQGIKDYIAQYG 108 Query: 81 D--AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---KDKSLYMTTVTADNILEGK 135 D + P + + +++ V +L D KD ++ ++ D+I GK Sbjct: 109 DKAVFVVDPSSTANTANIAELCEESGNYVAILAHRADGLYPKDYPHFVASLMLDDIAIGK 168 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L + + G+ V ELQG +G A +R K F EA+K+ PNI+++ SQ+ +++S+ Sbjct: 169 ATAKALFESIGGE-GQVAELQGLLGDDSATNRHKAFEEALKDYPNIEVVDSQTASWSQSE 227 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 + E+++ ++ VY+ ND M +GA++A+K GL I+ DG+ Sbjct: 228 AMTLTENWLVKY---PDLKGVYSANDTMALGAVEALKNKGLNG--KIMVSGCDGIEAALN 282 Query: 256 AMMDGEANASVELTPNM-----AGPAFDALEKYKKDGTMP--EKLTLTKSTLYLPDTAKE 308 A+ DG+ + M A A A T+P E+L K+TL D A + Sbjct: 283 AVNDGDMVITNANNGYMIAGYGASYAIQAALGKLDPTTIPDNERLIFCKTTLVTKDNAND 342 Query: 309 ELE---KKKNMGY 318 ++ K KN GY Sbjct: 343 IIDKFIKTKNPGY 355 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 127/298 (42%), Gaps = 15/298 (5%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGV 80 +GFSQ + +RA + + + L IADGQ Q+ V +F+ Q V Sbjct: 48 KSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFLTQQV 107 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 D +F++ A P + D IPV LDR + + + V+ DN G + Sbjct: 108 DILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEK---FTSFVSGDNRAIAHEAGLY 164 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 + +V L+G +S AI+R +GF I P +KII Q D+ + K EV Sbjct: 165 AASLL-PDGGDVAILEGLPSSSPAIERLEGFKAGISTNPKVKIIAVQPVDWMQDKAVEVF 223 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP---DIYKAM 257 + ++A +I +VY ND GA A+K+AG + DG+P +A+ Sbjct: 224 SAMLQAH---PDIKLVYTSNDLAAAGAYIAVKQAGKLG--QVKIIGTDGLPGPSGGIRAV 278 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKD-GTMPEKLTLTKSTLYLPDTAKEELEKKK 314 +G+ A+ + P A A D +K D + +L + AKE K + Sbjct: 279 AEGQWTATY-VYPTGAAEALDLAKKILIDCASSVPRLVTVPTQRIDASNAKELYAKGE 335 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 124/272 (45%), Gaps = 9/272 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSE--AEKRGITLKIADGQQKQENQIKAVRS 74 + VG + G ++ + N K + + L + DG+ Q + Sbjct: 46 AQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNNQFET 105 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + Q D I P+ + +A +A IPV + ++ ++ V +++++ G Sbjct: 106 MITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDKL---LSYVGSNDVIAG 162 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 + +V + GK NVV L+G +G S ++R++G + PN+K++ ++ +++R+ Sbjct: 163 AMQAQAVVDAMGGK-GNVVILEGPIGQSGQVERRQGNLSVLAKYPNVKVLEMKTANWSRA 221 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 + + E+++ A I + ND+M +GAI+A+K GL P K I T IDGV D Sbjct: 222 EALSLTENWLTAHAG--KINGIIGQNDEMALGAIEAVKAKGLDP-KTIPTAGIDGVSDAV 278 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKD 286 +A+ G + ++ + A D L + Sbjct: 279 RAVKAGIMASVLQDASAQSQGALDVLLRKLIG 310 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 11/289 (3%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 P +G + + + + + ++ G L D + Q + + + Q VD Sbjct: 42 EPRKIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQQVD 101 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI IAPV G E LKEA IPV ++D + Y ++ +DN G + Sbjct: 102 AIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNKNITY--SIVSDNYDAGVQCAKDM 159 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +++++ N+V LQ + R KGF + I++ N K+++ D ME Sbjct: 160 MRKLDH--ANIVLLQHS-TTRSGYLRIKGFEDTIQSNENYKVVKRMECDGQLEVAMPKME 216 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 SFI+ G +V ND +GA+ A+ + KD IDG P+ + +++G+ Sbjct: 217 SFIE---EGIEFDVVMCLNDPSAMGAMAALSSNNI--LKDKYVYGIDGTPEAKEMVVEGK 271 Query: 262 ANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 A+V +P A + + K T+ K ++ + + ++ Sbjct: 272 MAATVAQSPKTFGKKAGEVIYKLFSQETIKNKNEMSPVQIITKENVQDY 320 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 128/272 (47%), Gaps = 10/272 (3%) Query: 42 TNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 A + K + G+ +E Q+ ++ V +GV+A+ ++P+ P ++ A Sbjct: 117 AEDATAAGCKLSVDTTSPMGESDEEGQLSILKDQVRKGVNAVLLSPISDANCLPGIEAAH 176 Query: 102 DAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 +A+IPV+ ++ + D V +++ +G+L +W+ +++ G +V + G Sbjct: 177 EADIPVYAVNNEFNGADM-----FVGPNSLEQGQLAAEWVNEKLGG-SGDVAIVMGMAKT 230 Query: 162 SVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 +V +R +GF E + +I+++ Q+ D+ RS+ K+V +F+K ++ ++ +N Sbjct: 231 AVTRNRTQGFEEWFADNDSDIQVVAKQNADWDRSQAKDVAATFLKTY---PDLKAIFCNN 287 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDAL 280 D M +G I+A+KEA L KDI DG + Y ++ E A+++ P G + Sbjct: 288 DVMALGVIEAVKEADLTLNKDIYVIGCDGQSEAYDSIRANEMAATIDTFPYYEGYMAAEV 347 Query: 281 EKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 G ++ T S + E+ Sbjct: 348 CYRSLIGQTVPRVVFTPSKMLDSTNVDNTPEE 379 >UniRef50_A8RMQ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RMQ4_9CLOT Length = 330 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 162/330 (49%), Gaps = 22/330 (6%) Query: 1 MWKRLLIV-SAVSAAMSSMALAAP-------------LTVGFSQVGSESGWRAAETNVAK 46 M K+++ V AV A + L VG SQ + W+ A+ K Sbjct: 1 MRKKIIAVCLAVMLACLLWLVKDRWSLPAAQETEHEGLRVGLSQAEPLTPWKTAQIKSFK 60 Query: 47 SEAEKRGITLKIADGQQKQ-ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 A +RG L +++ E QI+ + + +D + + P G++ VL EA+ + Sbjct: 61 EAARRRGAQLIYHAPEEESLEWQIEDIYGLLDADIDYLILIPSARNGYDQVLLEARQRGV 120 Query: 106 PVFLLDRSIDVKDK----SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 PV L ++ ++++ + + V +D EG+L D L + +PC+ + +QG + Sbjct: 121 PVILAEQDVEMEPEYDREDYILGYVASDYYAEGELCADILARHFGIEPCHTMVIQGEKSS 180 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 ++ +R GF ++ N+ + + R ++V ES I ++ + V+A +D Sbjct: 181 AMDWERYMGFMHGVREHSNLYVSKRVESSGNRLTAQKVTESVIADQDI--DFNAVFAQSD 238 Query: 222 DMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALE 281 + +G +QA+K AG++PG+D++ SI G+ D++KA++ E A+V+ +P FD + Sbjct: 239 EDGLGVLQALKLAGMEPGEDVVIVSIGGIQDVFKAIIAREYLATVKSSPEYGDAVFDIIN 298 Query: 282 KYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 ++++ G P++ T+ K Y D A+E E Sbjct: 299 RHQR-GENPDRQTMVKHREYTMDNAEELFE 327 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 19/289 (6%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRG---ITLKIADGQQKQENQIKAVRSFVAQGVD 81 +VG + + + A+ EA+K G + + + Q + +FVA D Sbjct: 61 SVGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTD 120 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I I + G P + +A+ A V +D +I+ TVT +N+ G++ ++ Sbjct: 121 LIIINAADSKGIRPAVDQARQAGKVVIAVDTAIEAD----IDATVTTNNVQAGEISCQYI 176 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR-SQSGDFTRSKGKEVM 200 + GK NVV + G SV I R G + + P+IK++ Q+ + +R G VM Sbjct: 177 ADRLKGK-GNVVIVNGPPVTSV-IQRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVM 234 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 + I V+A ND +G A +A +D +DG P+ +A+ G Sbjct: 235 SDLL---VTFPKIDAVFAINDPSGVGVDLAANQAKR---QDFFIVGVDGAPEAIEAIASG 288 Query: 261 E--ANASVELTPNMAGPAFDALEKYKKDGTMPE-KLTLTKSTLYLPDTA 306 + A+ P + G PE L + L + Sbjct: 289 DSLYAATATQNPRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKENV 337 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 8/286 (2%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 V S + A + EA K G+ +++ D Q QI +++ QG + + Sbjct: 40 VVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQISDLQAAAVQGAKVVIV 99 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 AP + + + + V +DR+I + + V ADN+ G+ + DW+VK Sbjct: 100 APTDSKALAGAADDLVEQGVAVISVDRNIAGGKTA--VPHVGADNVAGGRAMADWVVKTY 157 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFTRSKGKEVMESFI 204 VV + G+S +I+R KG + + P KI+ Q+ + R + V ++ + Sbjct: 158 PA-GARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSKRDQALTVTQNIL 216 Query: 205 KAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANA 264 + + ++ NDDM +GA++A++ AGL K + D +P+ + GE A Sbjct: 217 TSMRDTPP-DVILCLNDDMAMGALEAVRAAGLDSAK-VKVIGFDAIPEALARIKAGEMVA 274 Query: 265 SVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +VE P A K G K K L E Sbjct: 275 TVEQNPGLQIRTALRQAVDKIKSG-AALKSVSLKPVLITSGNLTEA 319 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 21/296 (7%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKR---GI--TLKIADGQQKQENQIKAVRSFVAQ 78 V + WRA +EAEK G+ I + QI ++ + + Sbjct: 49 YVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDINKQISDMQDLITK 108 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 VD I I T P ++EA +A I V D +D ++ + TV D G++ Sbjct: 109 KVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDEQ---VATVGIDQTEFGRVCA 165 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 DWLVK+++GK +V L G G + R G E K P+I+I+ S + + ++GK Sbjct: 166 DWLVKKLDGK-GKIVVLNGIAGTANDTMRWNGAEEVFKQYPDIEILGSANASWDYAQGKA 224 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 MES + A I V++ M GAI A AG K ++ + +G +A + Sbjct: 225 AMESMLSAY---PEIDGVWSQGGAMTQGAIDAFIAAGRK----LVPMTSEGNNGALRAWI 277 Query: 259 DGEANASVELTP----NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + N + P A + K +P+++TL + D + Sbjct: 278 ENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVTL-DIPVVTEDNVDKYY 332 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 13/281 (4%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKI--ADGQQKQENQIKAVRSFVAQGVDAI 83 + + + + EA +GI + I A ++ + Q++ + + +++G AI Sbjct: 47 IAIVLKTLSNPFWVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAI 106 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD----KSLYMTTVTADNILEGKLIGD 139 IAP+ P + EA I V +D +D++ + VT DN+ G + Sbjct: 107 GIAPLSPVNTIPAIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAE 166 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 +++ ++ + V ++G G + R++G EA K K++ SQ D+ RSK +V Sbjct: 167 YIIGKL-PEGGEVAIIEGKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDV 225 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 + I+ N+ +YA ND M +GA+QA+ AG IL DG P+ ++ + Sbjct: 226 AANLIQKY---PNLKAIYACNDTMALGAVQAVANAGKTG--QILVVGTDGAPEARTSIDE 280 Query: 260 GEANASVELTPNMAGPA-FDALEKYKKDGTMPEKLTLTKST 299 G+ NA+V P M G L + KD K Sbjct: 281 GKLNATVAQDPAMIGATSLKILIEAIKDKPQISPDIEAKEV 321 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 20/322 (6%) Query: 1 MWKRLLI----VSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR---- 52 M K L + + + + +G + + GW A A+ +A+ Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 I I Q+ V +AQGVDAI + P+ + P+ + ++A IP+ ++DR Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + ++ V DN G G++ ++++ G VVE+ G SV R GF Sbjct: 121 ELTNDAATVV---VKGDNYGAGVNAGEYFMEQLGG-NGKVVEIAG-PSNSVTQQRSDGFR 175 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EAI +I+I+ SQSG+F+ +VME+ + ++ I VY +D M +G +QAI Sbjct: 176 EAI-EGSDIEIVASQSGEFSTETSLQVMENILTSQ---PEIDAVYTQDDGMALGVLQAIN 231 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMM-DGEANASVELTPNMAGPAFDALEKYKKDGTMPE 291 EA + + G D+Y+ +M DG A+ +P M Sbjct: 232 EANRTDIQ--FITGVAGSKDVYEIIMDDGLITATFLYSPLMVKEGVIIGADLANGEDPDS 289 Query: 292 KLTLTKSTLYLPDTAKEELEKK 313 + +T D + + + Sbjct: 290 AEVVVPATPVTKDNVDDHYDPE 311 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 129/311 (41%), Gaps = 12/311 (3%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQV--GSESGWRAAETNVAKSEAEKRGITLKIADG- 61 LL+ + + A + F+ + G+ + + + A+ E+ G + Sbjct: 121 LLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFRGPS 180 Query: 62 -QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + ++ QI V+ F+ VD I +AP+ A +KEA A +PV + D ++ D Sbjct: 181 KENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNT-DPG 239 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 +++ V DN GKL G+ + + K +V+ L+ G+ R++GF +I N Sbjct: 240 DFVSYVATDNFEGGKLAGEAMANALGEKGGDVILLRYEQGSESTHQREEGFLYSIAEYSN 299 Query: 181 IKIIRS-QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 I+++ S Q T + ++ + G + + GA++A++E K Sbjct: 300 IRVLSSDQYAGTTTESAIDKAQALL--NRFGDEADGICTVCEPTAEGALRALRE--RKLA 355 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPEKLTLTKS 298 + + D + +++ GE NA V P G A + + + G PE+ T Sbjct: 356 GKVKLVTFDSSDSLRESLSAGEVNAIVLQDPVAMGYQAVKTMAAHLR-GETPEQFIDTGV 414 Query: 299 TLYLPDTAKEE 309 + +E Sbjct: 415 FVATAKNQDDE 425 >UniRef50_C0BVF8 Putative uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 RepID=C0BVF8_9BIFI Length = 330 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 11/291 (3%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ-KQENQIKAVRSFVAQGVDAI 83 T+GF VG E G+R A N K E G L + Q Q+ QI+A FV VDAI Sbjct: 41 TIGFVAVGPEGGFRTANENDLKKAFEDAGFDLVYSPTQNNDQQKQIQAFNKFVNDEVDAI 100 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS---LYMTTVTADNILEGKLIGDW 140 ++ +GW+ L+ A +AEIPVF +DR+ID+K + ++ + N+ G+ ++ Sbjct: 101 VLSATNDSGWDDCLENAAEAEIPVFTVDRNIDIKSDAAKKAVVSHIGPSNVWAGEQAAEF 160 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 + K N L+G G SV DR G+ K A NIK++ SQS +++ + K V Sbjct: 161 VNKSF-PDGANGFILEGPAGLSVVTDRGTGWDN--KAASNIKVLESQSANWSTDEAKTVT 217 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 + + N ++A ND+M +GA QA+ AGLK + +IDG ++++DG Sbjct: 218 AGLLDKYKS-DNPQFIFAQNDEMGLGAAQAVDAAGLKG--KVKIITIDGTKAALQSLVDG 274 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 + + +E P +A++ Y DG E +S + D+AKE L+ Sbjct: 275 DLSYVIEYNPIFGKETANAVKDYL-DGKSVESDIEIESKTFDADSAKEALD 324 >UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Actinomycetales RepID=A6W806_KINRD Length = 362 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 123/286 (43%), Gaps = 11/286 (3%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 L VG S S + A + AE +GI L Q V +V GVD Sbjct: 50 KKLRVGVSVYDMSS-FITAGKEGMDAYAEAKGIELLWNSANLDVNTQASQVDQYVNAGVD 108 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI + PV A +P + AK A IP+ ++ ++ D + V D++ G+ + Sbjct: 109 AIIVVPVQADSLQPQVASAKAAGIPLLAVNAELNSTDIA---GNVQPDDVAAGEAQMQMM 165 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + GK +V LQG +G S ++R KG + P+I+++ + ++ R + ++ Sbjct: 166 ADAIGGKGG-IVVLQGPLGQSGELNRTKGIENVLAKYPDIEVLAKDTANWKRDEAVNKVK 224 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 ++I A G I V A NDDM +GA+QA+KE+G+ IDG+ D A+ GE Sbjct: 225 NWISA--FGARITGVVAENDDMGLGALQALKESGVTLP----VVGIDGIEDGLNAVKSGE 278 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 ++ + A A+ +G + K + Sbjct: 279 FIGTMLQNGTVELSAGLAVAAAIANGEDVNTEPVYKMPKITKENVD 324 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 31/330 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-----------------LTVGFSQVGSESGWRAAETN 43 M KR L S+A + + V FS S + A Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 + +A++ G + D Q E QI ++S V +GVDAI +AP+ P L +A Sbjct: 61 GFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEA 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 +PVF +DR + + ++T+ DN+ G+ + + LVK+ G+ +V+ +QG + + Sbjct: 121 GVPVFCVDRRGEGE----VVSTLETDNVKAGEAMAEQLVKDY-GEDVDVLIIQGVLSDTP 175 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQS-GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDD 222 +DR +G ++ NI I+ S G+++ ++F++ ++ +++ D Sbjct: 176 TLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETN---PDLDVIFTCTDA 232 Query: 223 MVIGAIQAIKEAGL--KPGKD--ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AF 277 +V G + A+KEAG K G++ + S+DG ++ K + DG + + P G Sbjct: 233 LVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQFGIDTV 292 Query: 278 DALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 +++ Y G + EK+ + + K Sbjct: 293 KSMKTYLDGGKVEEKVYYNGDVVTDENIDK 322 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 129/299 (43%), Gaps = 20/299 (6%) Query: 22 APLTVGFSQVGSESGWRAAETNVAK---SEAEKRGITLKI----ADGQQKQENQIKAVRS 74 + +G E+ + + + ++ G + + A G+ ++ Q+ V Sbjct: 69 GEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVED 128 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + + A+ ++P+ P +++AK IPV ++ I V I+ G Sbjct: 129 MINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGI----IKNADIFVGPKAIMNG 184 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTR 193 +L +W+ K++ G+ V + G A A R GF +K NA +KI+ Q+ D+ R Sbjct: 185 ELAAEWISKKIGGE-GEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQNADWDR 243 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 +K K++ E +IK N+ ++ +ND M +G +A+ + DIL +DG+ + Sbjct: 244 AKAKDLAEIWIKKY---PNLKAIFCNNDVMALGVQEAVNASKR----DILVVGVDGIKEA 296 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 Y+++ GE +A+V+ P G + G ++ T L E EK Sbjct: 297 YESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVIWTPQALIDSTNVNEPSEK 355 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 19/313 (6%) Query: 2 WKRLLIVSAVSAAMS--SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI- 58 + L +AV AA++ ++ A LT+ + + + A + A+K + L + Sbjct: 1 MRLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQ 60 Query: 59 -ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + E Q+ A + + + A+ +A + + P LK+A IP+ LD ++D Sbjct: 61 AVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPA 120 Query: 118 ----DKSLYMTTVTADNILEGKLIGDWLVKEVN-GKPCNVVELQGTVGASVAIDRKKGFA 172 + ++++DN G +++V ++ G V+ ++G G R+ GF Sbjct: 121 VLQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFT 180 Query: 173 EAIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 E +K APN +I+ + GD+ R K + ++ ++ +Y ND M +GA++A+ Sbjct: 181 ERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRH---PDLAAIYCANDTMALGAVEAV 237 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMP 290 AG K +L DG D K++ G NASV P + G A + + K K G Sbjct: 238 FAAG----KKVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIK-GEQV 292 Query: 291 EKLTLTKSTLYLP 303 + + + + Sbjct: 293 DPKIIVPTLVIDK 305 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 13/293 (4%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVA----KSEAEKRGITLKIADGQQKQENQIKAV 72 + + + F +S + T A + A+K + + E QI+ V Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + +DAI IAP + G P +K+A DA I V + + D ++ V A N Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGD---IVSYVGAQNFD 163 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 G + L +++ G+ V+ ++G G S + +R +GF EA+K P I+++ SQ D+ Sbjct: 164 VGYSLATALFEKLGGQ-GKVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWD 222 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R+ VME+ ++ I V DM +G I+AIK AG K+I++ + D D Sbjct: 223 RASAMTVMENCLQTY---DQIDGVLTLTKDMGLGTIEAIKSAGRD--KEIVSMTFDVDDD 277 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 + A+ G+ AS + DG + + T+ + Sbjct: 278 VISALKAGDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAED 330 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 135/290 (46%), Gaps = 13/290 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 LT+G S + + + K +A++ G+ + + D Q Q A+ F+ Q V Sbjct: 39 KKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNV 98 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTAD-NILEGKLIGD 139 D + + + P ++ A + +PV +D ++ ++ + Y+ TV+ D G+ Sbjct: 99 DGMIVLGTDNSAIVPAVEGAFEK-MPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKK 157 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 ++ +++ GK + + + + + + R GF +A+K + N+KI+ SQ G + R + Sbjct: 158 YIDEKLGGKSE--IAIVTDLKSQIQMQRIDGFKDALKGSANVKILNSQPG-YDREESLNT 214 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 +E+ I++ ++ ++YA ++ V+GA A++ A KD+ D + + D Sbjct: 215 VENLIQSN---PDVDIIYATAENSVLGAKAALESA---KNKDVKIVGFDLTEEASSGITD 268 Query: 260 GEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 G A ++ P G A +A+ K K G EK + LY + K+ Sbjct: 269 GTILAMIQQQPKEMGRLAVEAVVKAIK-GEKVEKNIPVPALLYDKENIKD 317 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 16/300 (5%) Query: 1 MWKR-LLIVSAVSAAMSSM-----ALAAPLTVGFSQVGSESGWRAAETNVAKS--EAEKR 52 M KR LL + V + + A A + + + + AKS Sbjct: 3 MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62 Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 TL + DG+Q Q + + + DAI PV ++ AK A IPVF + Sbjct: 63 TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + LY + ++++ G+++ ++ + GK VV L+G +G S + R +G Sbjct: 123 VV--SKTELYDAYINSNDVEAGEMLAKAVIDKA-GKDAKVVVLEGMLGQSAQVQRLEGIN 179 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 +K + I+ + +++R++ +ME+F+ + G + V A ND+M +GAI+ I+ Sbjct: 180 NVLKQNSGVTILEQNTANWSRAEAITLMENFLTSH--GDQVQGVLAENDEMAVGAIEGIR 237 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD--ALEKYKKDGTMP 290 GL P K + +DG+ D +A+ GE S+ + AL K D P Sbjct: 238 NHGLDP-KKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLALSKLVGDTYKP 296 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 126/286 (44%), Gaps = 15/286 (5%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 T+G S + S + + + +A++ G TL + D Q+ V+ F+ + VDAI Sbjct: 60 TIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKVDAIV 119 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 IAP + G + +++ A+ A IPVF +D + D K +T V DN G+L +++V Sbjct: 120 IAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP----VTHVATDNKKGGQLAAEYVVNN 175 Query: 145 -VNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGKEVMES 202 + K NV + + +DR+ GF + +K NAP+IK++ Q+ + K +VM++ Sbjct: 176 ILTEKKGNVAVITYSE-IESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAADVMQN 234 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD-GE 261 + NI +V+ D IGA+ +I A DG P+ + G Sbjct: 235 MLLKN---DNIDVVFCVGDPAAIGALSSITAANAAT----KIIGYDGNPEGVAEIKKGGN 287 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 A V P G K +G + L + AK Sbjct: 288 WVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEILIAPYIIDAKNAK 333 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 121/312 (38%), Gaps = 19/312 (6%) Query: 5 LLIVSAVSAAMSSMALAAPLT----VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 L +S + + AA +G + + +A AK A G T D Sbjct: 17 LAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGATANTQD 76 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q NQ + +F+ QGV+ I I+ V G +P ++ AK A I V +D D Sbjct: 77 AQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVDTPAKSAD-- 134 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 V D + G+ +L +++ GK NV+ + GT ++ DR G +K P Sbjct: 135 ---AVVMTDAVQAGEKSCQYLFEQMGGK-GNVLLVDGTPLQTI-RDRITGCNNVVKKFPG 189 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK++ Q+ R+ G V + A ++ ++ ND +GA+ A+++A Sbjct: 190 IKVVGQQASKNDRASGLAVTTDMLTA---TPDVQGIFGMNDPSALGAVLAVQQAHKAG-- 244 Query: 241 DILTGSIDGVPDIYKAMMD--GEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTK 297 + +DG P+ + + P M A + + + E L Sbjct: 245 TVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNIIDNKPPAETTILIP 304 Query: 298 STLYLPDTAKEE 309 S L DT + Sbjct: 305 SELVTRDTVSQY 316 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 12/301 (3%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKA 71 SAA + + + A K +A++ G+ + + D + QI Sbjct: 26 SAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSSTQISQ 85 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 ++ +AQGVD I ++P + P ++ DA V +D I + DN Sbjct: 86 IQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAF---DNE 142 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 GKL + L K + G+ V+E QG GA AI R KGF + IK P IK+I + Sbjct: 143 KAGKLGAEALAK-LMGEKGTVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGR-DAQW 200 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI----KEAGLKPGKDILTGSI 247 T + A+++ I +++HND+MV G + + K+A + I + Sbjct: 201 TADNALSLTVDNFTADSS---INGLFSHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGV 257 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 DG P + +G +A+++ P G + DG K+ LT + L + Sbjct: 258 DGTPLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKENVD 317 Query: 308 E 308 + Sbjct: 318 D 318 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 200 bits (509), Expect = 5e-50, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 121/289 (41%), Gaps = 13/289 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ--KQENQIKAVRSFVAQGVDA 82 + + + A+ ++ GI L + Q E QI+ + + DA Sbjct: 50 KIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLIRMKFDA 109 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS----LYMTTVTADNILEGKLIG 138 I IAP + PVLK A++A I + +D +D + + ++ DN Sbjct: 110 IVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEKAAYESA 169 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 ++ +E++ KP L+G A + R+ G A + P I+++ +S ++ +G++ Sbjct: 170 GFIAREIH-KPAQAAILEGIRSADNSRQRRVGAERAFRENPLIRLVARESANWKIDEGRD 228 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 V +I +++ ND M +GAIQ ++E+G + + D + + +A++ Sbjct: 229 VTRRLFSDH---PDITLLFCANDMMALGAIQFLQESGRYG---VKVAAYDALEEAKRAIL 282 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G +V G L +G ++ L +++L ++ K Sbjct: 283 SGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPEVVLVETSLVTLESLK 331 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 130/305 (42%), Gaps = 16/305 (5%) Query: 5 LLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-- 61 L+ S V + + + VG + + A+++A+K G L G Sbjct: 16 LMAGSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAF 75 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 E Q+ A+ + V QGV I I P +TG +K+A+DA + V LD + D +D Sbjct: 76 DGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDA-- 133 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI---KNA 178 T DN G G W+ + P VV L GT G +V R GF E N+ Sbjct: 134 VDATFATDNKAAGVAQGKWVKAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLTDNS 193 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P +I+ ++ + ++K + ME+ ++ + +Y N+ GA QAI+ G Sbjct: 194 P--EIVGQENTNGDQTKAQTAMENLLQ---RAPGVNALYTINEPAAAGAYQAIQAVGRA- 247 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTK 297 + GSIDG + G+ A+V P MA A+ K+ +DGT P T Sbjct: 248 -DQVTIGSIDGSCTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDTG 306 Query: 298 STLYL 302 S L Sbjct: 307 SELIT 311 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 120/290 (41%), Gaps = 13/290 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEK--RGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 ++ + + + + + +A+ G+ + + D + Q+ V+ + VD Sbjct: 55 SIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQDAITNKVDG 114 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I+P + VL A++A IPV + D D Y++ ++ DN K +G+++ Sbjct: 115 IVISPTDSASCIAVLSAAEEAGIPVVICDI---GTDSGEYVSFISTDNSGGAKKLGEYVA 171 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 ++N K + ++ + RK+GF E IK ++ Q R +G + Sbjct: 172 DKLN-KGDEIAQIALNQARKNGVLRKEGFEEGIKEKLK-EVDFRQMEKVNRDEGVRYTQD 229 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 I + N+ ++ H++D +GA+ A+KE K D P++ +A+ G+ Sbjct: 230 LITSY---PNLKCIFCHSEDPSMGAVTALKEINNDKCK---IVGFDCSPEVVEAIKSGDI 283 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 A+ P G K DG PEK + L D + +K Sbjct: 284 LATAAQQPVFMGRTAVDCLKTHLDGGTPEKEISVDTLLVTQDNINDVYDK 333 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 138/321 (42%), Gaps = 29/321 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALA---------------APLTVGFSQVGSESGWRAAETNVA 45 M K LL++ + S + T+G S + + + + + Sbjct: 1 MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60 Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 + EA + + L ++ Q QI + F+ + VDAI I+PV + G +K+A+ A I Sbjct: 61 EKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAANI 120 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 PV +D D + V DN GK+ G+ + + +NGK V ++ SV + Sbjct: 121 PVITVDVPAIGVDVA---AHVATDNYTGGKIAGEEMARLLNGK-GEVAVIEYPTVDSV-V 175 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 R +GF E I P+IKI+ Q+G TR + ++ I+A KN+ ++ DD + Sbjct: 176 QRIEGFKEVIAKYPDIKIVAIQAG-ITRPEALTAAQNMIQAN---KNLGGIFGFGDDAAL 231 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM-MDGEANASVELTP-NMAGPAFDALEKY 283 A+ A+K AG + I DG+ + A+ + A + P +M A D K Sbjct: 232 AAVAAVKSAGKE--DQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKI 289 Query: 284 KKDGTMPEKLTLTKSTLYLPD 304 K G EK ++ + Sbjct: 290 LK-GEQVEKNIPVTPGIFTKE 309 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 20/317 (6%) Query: 1 MWKRL--LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M K L + V +S+ A AA + + + EA+ G+++ I Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAAA-EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 59 A--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + ++Q++ + I AP+ + + A I + LD ID+ Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119 Query: 117 KD----KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + VT DN+ G +++ ++ + V ++G G + R+ G Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGAT 179 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EA K A IK++ SQ D+ R K +V + ++ NI +Y ND M +G QA+ Sbjct: 180 EAFKKASQIKLVASQPADWDRIKALDVATNVLQRN---PNIKAIYCANDTMAMGVAQAVA 236 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGT--- 288 AG K GK +L DG+P+ K + G+ A+V P G + +K G Sbjct: 237 NAG-KTGK-VLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIP 294 Query: 289 --MPEKLTLTKSTLYLP 303 + L S L Sbjct: 295 LDKAPEFKLVDSILVTQ 311 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 130/311 (41%), Gaps = 8/311 (2%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M K+ L + V+A ++S A TV + + + A++ G+ + Sbjct: 1 MNKKTLF-AGVAALIASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKELGVEVLSLS 59 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + ++ + + +A+ I + P+ + P L +AK A IPV L++ ++ K Sbjct: 60 QNFDVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDAAKP 119 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-AP 179 + D EG++ + L K ++GK ++V + G G I R GF +K Sbjct: 120 FVTSFTGPDVYSEGEMAAEALQKALDGK-GSIVIIAGQAGNGTTIGRVDGFNAKLKALGS 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 I+++ + + DF + K I G I VYA++D M G I A KEA K G Sbjct: 179 KIEVLDTVNADFDQQKALVASRDLITR--FGDKIAGVYANDDTMARGFIDAWKEA--KSG 234 Query: 240 K-DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 K I+G D ++++ +GE A++ +P G +G + Sbjct: 235 KATPPIVGINGQKDAFESIRNGEMYATIVQSPIEDGLLAINAMADVLNGKKIDARLPIPL 294 Query: 299 TLYLPDTAKEE 309 T+ ++E Sbjct: 295 TVVTKANVEKE 305 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 142/341 (41%), Gaps = 35/341 (10%) Query: 4 RLLIVSAVSAAMSSMALAAP------LTVGFSQVGSESGW----RAAETNVAKSEAEKRG 53 R+ + ++A M+ A + +G + + + A+ N K + EK G Sbjct: 10 RICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENAIKDKEEKLG 69 Query: 54 --ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLD 111 + + IAD + Q +Q V F+ +G DAI + V T ++ +AK+A IP+ + Sbjct: 70 KKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKEAGIPIIFFN 129 Query: 112 RSIDVKDKSLY--MTTVTADNILEGKLIG----------DWLVKEVNGKPCNVVELQGTV 159 R +D +++ V D G+L G + + + V L+G Sbjct: 130 REPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKLQYVMLEGEQ 189 Query: 160 GASVAIDRKKG-FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 ++ R + +K + + S +G++ RS E+M+ +I G I +V + Sbjct: 190 VHQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEWIGQY--GSQIEVVLS 247 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVE-----LTPNMA 273 +ND+M +GAI+A+ E G+ G + IDG D + ++ GE +V ++ Sbjct: 248 NNDEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGEMEGTVMNDARGQAESIL 307 Query: 274 GPAFDALEKYKKDGTMPE---KLTLTKSTLYLPDTAKEELE 311 G A E +PE + + D +E ++ Sbjct: 308 GIACACAEGKDPKQEVPELKGQYVRVPHSPVTADNVQEFID 348 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 17/296 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L +GF V + ++ + +AK + +GI L +AD ++ QI V SFV G D + Sbjct: 51 LKIGFC-VTNRDQFQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLL 109 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK---DKSLYMTTVTADN--ILEGKLIG 138 I V A + ++ A D +P +R D++ Y ++ + GK + Sbjct: 110 MINCVDAESIQEIINAAGD--VPCVFFNRMPSDHSVFDENHYYVGMSDYDCGYDMGKFMA 167 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQSGDFTRSKGK 197 +WL + V G +GA+ + R G + + ++ + + + ++ RSK Sbjct: 168 EWLKDNNKTDTADGVLFLGPLGATNTVSRTDGIKKGLADSGYKVNWVFEDTAEWDRSKA- 226 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 M+ F + +GK + A+NDDM +G I+A+ AG D ID + A+ Sbjct: 227 --MDKFTQFMGSGKKFDFIAANNDDMALGCIEALTAAGYSAPFDFPIAGIDATENGLLAV 284 Query: 258 MDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLT----LTKSTLYLPDTAKE 308 DG A+ + +P M F+ +D MPE++ + K+ + D + Sbjct: 285 GDGTLTATFDQSPSKMTNYCFEIAFAILQDTDMPEEVKDFTWIYKAEMVTADNVDD 340 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 126/331 (38%), Gaps = 25/331 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAA-----------------PLTVGFSQVGSESGWRAAETN 43 M KRLL + V+A ++MA+ VGF+ + A + Sbjct: 1 MKKRLLSILMVTAMCATMAVGCGTADDTKDSSSSSKGKSDYLVGFANNSDTYNYCAKFRS 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 K E +GI++ + D Q + F+ Q + + G P L+ AKDA Sbjct: 61 YLKDATEAKGISITVTDAGGDTNVQNGQIDDFIVQNANVVSAISNDLDGSIPALEAAKDA 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 +P S+ D V + N GK G++L +++ G Sbjct: 121 GLPYVSFLTSVSGGDDYDGYIYVGSPNEDAGKAQGEYLCDAF-PDGASILYFTGAPNDQQ 179 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 +DRKKG EA+K PNIKI+ + + ++ G E + + I + NDD Sbjct: 180 YVDRKKGLEEALKKNPNIKILDEYNVENSKDLGMSTAEDSLLSY---DKIDAIVCQNDDG 236 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 +G ++A+K AG I IDG D +++ DGE + A + + Sbjct: 237 ALGVVEALKSAGK--LDSIQVLGIDGSDDALQSIQDGEMTMTALQDAKAQAEAGADIFEK 294 Query: 284 KKDGTMPE--KLTLTKSTLYLPDTAKEELEK 312 K GT P + + D + L K Sbjct: 295 LKKGTDPADIEDVNIPFKIVTKDNVADYLSK 325 >UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL86_EXIS2 Length = 317 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 21/312 (6%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLT------VGFSQVGSESGWRAAETNVAKSEAEKRGIT 55 W +LI+ S + S T VGF+ V + + N K+EA+ Sbjct: 7 WLLVLIIWIASVLVISNLFVQKETSPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYE 66 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 +A Q + ++ + + FV VDAIFI + ++EAK A IPVF +DR I Sbjct: 67 ALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIR 126 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWL----VKEVNGKPCNVVELQGTVGASVAIDRKKGF 171 ++++T++N + G+ + ++ +K+ +VE+ GT +R +GF Sbjct: 127 SD---AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGF 183 Query: 172 AEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 + I+N P + I+ S SG++ + VM I ++G VY HNDD+ +G ++A+ Sbjct: 184 LKGIENEPTLSIVDSVSGNYDPVTSERVMRQVI---DSGIPFDAVYCHNDDIAMGVLEAL 240 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMP 290 K+A + + IDG I +A+ +A+V + M AF AL+ + K+ +P Sbjct: 241 KKAKISGK---IVVGIDGNRAILEAVDMKSMDATVVQSAEEMMKVAFSALKLHTKNKKIP 297 Query: 291 EKLTLTKSTLYL 302 ++ T S LY Sbjct: 298 DR-FYTYSYLYD 308 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 13/296 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADG--QQKQENQIKAVRSFVAQ 78 + + S A A+++A++ G + L + Q++ + + Q Sbjct: 47 KKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDAINQ 106 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 DAI IAP T PV+++A DA IPV L+D + Y++ V DNI ++ Sbjct: 107 KADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK---YVSFVATDNIKAAEMAA 163 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGK 197 D L + + GK + + G+ I R+ GF + +K P+I+II +Q +++ Sbjct: 164 DKLGELLGGK-GKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRAL 222 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 + A ++ Y N+ IG AIK+ L + D A+ Sbjct: 223 NQALDILTAH---PDLAGFYGTNEGSTIGIAMAIKQKDLAG--KVKVVGFDISQATINAI 277 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + AS+ P M G + K G K T T+ D E +++ Sbjct: 278 KENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTVMTKDNVDEVVKEY 333 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 13/315 (4%) Query: 1 MWKRLLIVSAVSAAMSSMAL--AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M R+ +++A + S A A T+ ++ + A+E A +A+ G + Sbjct: 1 MKLRITLLTAATLTAFSFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 + + Q + + + + + V I + +T +++AK A IPV L++R I V D Sbjct: 61 LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 +L +T +N G + + V+++ K EL + + + R K F + I Sbjct: 121 VAL--EQITHNNFQAGSEVANVFVEKMAEK-GKYAELTCNLADNNCVTRSKSFHQVIDQY 177 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P++ + Q T GK +M+S ++A ++ V N + +GAI A+K A Sbjct: 178 PDMVSVAKQDAKGTLIDGKRIMDSILQAH---PDVKGVICGNGPVALGAIAALKAANRS- 233 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVE-LTPNMAGPAFDALEKYKKDGTMPEKLTLT- 296 D++ IDG D A+ G A+V +A L+ Y + G P K + Sbjct: 234 --DVIVVGIDGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMF 291 Query: 297 KSTLYLPDTAKEELE 311 + L D A + + Sbjct: 292 RGILITQDNADKVQD 306 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 13/290 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI--ADGQQKQENQIKAVRSFVAQGVDA 82 +G + + + + AE GI +++ AD + + Q+ A+ + V G DA Sbjct: 91 KIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDA 150 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT----VTADNILEGKLIG 138 I ++P+ T P + A +AEIPV L +D + + +T + +G + Sbjct: 151 IILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEEQGSTVA 210 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + ++ + V L G GA ++ R G +N ++++ +Q+ D+ K E Sbjct: 211 NDMISRM-EDGGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACDWDTEKAYE 269 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 + + A ++ ++A ND+M + A+QA++E G KD++ +D D A+ Sbjct: 270 ATKDILTAH---PDLKGIFACNDNMALAAVQALQEMG---NKDVMVYGVDYTTDAKAAIE 323 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 DG S+ + + A + + G + TL D + Sbjct: 324 DGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVAD 373 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 127/318 (39%), Gaps = 14/318 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG 61 KR++I + +S A A +G + + S + A K EA K L++ Sbjct: 1 MKRMIIGTTAMFLAASSAYAGD--IGVT-IASNDTFLAVMVQAMKDEAAKTNQPLQVEFA 57 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI-DVKDKS 120 Q+ +++F+A VDAI + V +T + K A DA IP+ ++ + D+ Sbjct: 58 DADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQLG 117 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKP----CNVVELQGTVGASVAIDRKKGFAEAIK 176 + + I G L + + + + ++ +QG + A R K + + Sbjct: 118 PKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDVVA 177 Query: 177 --NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 +KII Q+ + K +++M ++I A G V ++NDDM +GA+ ++K A Sbjct: 178 TPECNFMKIIDEQTAQWDPVKAQDLMTNWITA---GHKPVAVLSNNDDMALGAVNSLKAA 234 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 G + KD++ ID + + G+ +A+V G G E Sbjct: 235 GWEM-KDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPV 293 Query: 295 LTKSTLYLPDTAKEELEK 312 L L K Sbjct: 294 WIPFELVNAANVDTYLNK 311 >UniRef50_B1G538 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G538_9BURK Length = 384 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 127/281 (45%), Gaps = 11/281 (3%) Query: 21 AAPLTVGFSQVGSESGWRAAETNV-AKSEAEKRG--ITLKIADGQQKQENQIKAVRSFVA 77 P +GFS G WR + K+ A+ L I +G Q ++ ++ Sbjct: 56 KPPYVIGFSNAGLGDSWRVVMQHSLMKAAADHPDQIRQLLITNGNMDDAKQAADIQDLIS 115 Query: 78 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLI 137 +GVD + ++ +PV+ A IPV ++DR I + +++ VT + + G++ Sbjct: 116 RGVDLLIVSANTQKALDPVVTRAMKQGIPVVMVDRRISSDN---FVSFVTGSDAMMGRVW 172 Query: 138 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 W+V++++GK NV+ L G G+SV+ DR+ + P IK++ + D++ K K Sbjct: 173 AQWIVEKLHGK-GNVIMLAGQAGSSVSADREAAAHQVFSQYPGIKVLDTVYSDWSPVKAK 231 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSID-GVPDIYKA 256 + M++ I G NI V+ + V G+I+A AG KPG+ + D P Sbjct: 232 QQMQAMIAKY--GHNINAVWCAHGLPVAGSIEAFVAAGFKPGEIPPHTTADLNGPLQLAL 289 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 + P+M G + D K + +P+ ++ Sbjct: 290 KYKIPML-EIGYPPSMGGTSLDVALKVLQGQPLPKIYEISP 329 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 126/303 (41%), Gaps = 11/303 (3%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ-K 64 + ++ + + + A++ A K G L + ++ Sbjct: 29 FLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEEFS 88 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 Q + + V DAI IAP T ++ A + +IPV L+D +I+ ++ +L Sbjct: 89 PAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIAL--A 146 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 +++DN+ G++ G+ L +++ GK V+ + G S RK+GF EAIK P+I+ + Sbjct: 147 RISSDNVEGGRMAGEALAEQIGGK-GKVLLISVKPGISTTDQRKQGFEEAIKQYPDIEYL 205 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 ++ + ++ + S ++A ++ ++ N GA +++AG + + Sbjct: 206 GTEYCNDDPTQAASITTSTLQAH---PDLAGIFGANVFSGQGAGTGVRQAGKR--DQVSV 260 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPE-KLTLTKSTLYL 302 + D P + + G + + PN G +Y + G PE K T T Sbjct: 261 VAFDASPTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGFTTVT 320 Query: 303 PDT 305 D Sbjct: 321 RDN 323 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 15/299 (5%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + + VG+S + + A +V K ++ G+ ADGQ+ Q+ A+ +++G+ Sbjct: 50 SAVKVGYSGPSMVAPYYVALEDVVKRSVQRYGMQYYTADGQEDVAKQVAAIEDLLSKGIQ 109 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + + P+ PV+ A + VF++D ID +K+ Y ++V A+N L G+L+G WL Sbjct: 110 VLVLNPLDPKAVVPVVNRAIAEGVVVFIVDSMID--EKAAYTSSVVANNTLNGELLGLWL 167 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-------NIKIIRSQSGDFTRS 194 + N + + + G G V +++ GF + + N I+ G + + Sbjct: 168 AETKN-EALKIAIISGNQGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNN 226 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 G + ME + A + ++ A ND M +GA + IK+ G + I DG + + Sbjct: 227 GGLKAMEDILAAHPY---VNVLLAENDAMALGAYKIIKQMGKE--NQITILGFDGQKEAF 281 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + G+ A+ + +P + G L +G KL T S L E + K Sbjct: 282 DMLKTGKFEATAQNSPKILGETIIELVARHLNGEKVNKLNYTPSVLISKKNVDEYYDAK 340 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 136/316 (43%), Gaps = 21/316 (6%) Query: 1 MWKRLLIVSAVSAAMSSMA-------LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 + K L++++A +S + A V + ++ + A+++A + G Sbjct: 2 LRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELG 61 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 I L + D E Q + V+ GV + P + P + + + IP +DR+ Sbjct: 62 IDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVDRT 118 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 I D + + ++N G L K + + V+ L+G G+S + +R +GF + Sbjct: 119 ITGADVA---ALIDSNNTEGGAAAASVLAKAIRAQ-GEVIVLRGIEGSSSSAERYEGFTQ 174 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 A+ P ++I+ +++ DF R ++++ + ++ ++A ND+M +GA+ A+ Sbjct: 175 AMAEHPRVRIVAAEAADFDRDTARDLVTDLLADH---PDVAGIFAENDEMALGAVDAL-- 229 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 G + GKD+ DG + +A+ + + A++ + G DG E + Sbjct: 230 -GERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGKLLDGEAAESV 288 Query: 294 TLTKSTLYLPDTAKEE 309 T + D ++ Sbjct: 289 -HTPVMVVTRDNIEKY 303 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 137/326 (42%), Gaps = 30/326 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPL-------------TVGFSQVGSESGWRAAETNVAKS 47 M K+ + + + ++ MAL A V S + AK+ Sbjct: 1 MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKA 60 Query: 48 EAEKRGITLKIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 ++ G+ + + + + + QI + + Q A+ ++P PVL+ A + Sbjct: 61 AGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---V 117 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 PV L+D +K+K + + +N G G L + K V + G +G + Sbjct: 118 PVLLIDTDAKLKNK---TSFIGTENYEAGYEGGKLLSSLLQ-KGDKVAIISGALGNTATD 173 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 +R KG A++ A + I+ Q D ++K VME+ ++ N ++ V+A NDDM + Sbjct: 174 ERVKGAKAALEEA-GMVIVAEQPADSDKTKAMSVMENILQKNN---DVKGVFAANDDMAL 229 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK 285 G ++A++ GL D+ DG + ++++DG+ ++ P G Sbjct: 230 GVLRAVEAKGL----DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAI 285 Query: 286 DGTMPEKLTLTKSTLYLPDTAKEELE 311 +G +K + + D A+E+LE Sbjct: 286 NGEKVDKRINSGVEVITKDNAQEKLE 311 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 10/283 (3%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIA 86 G + + + + N + + EK G + D Q+ Q + ++ V + VDAIF+ Sbjct: 48 GATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDAIFLN 107 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN 146 PV EP L AK A+IPV ++D + D L T+ +DN G L ++K+ + Sbjct: 108 PVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSD--LVAMTIVSDNYKAGVLCAKEMMKQKD 165 Query: 147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA 206 N+V L A A+DR GF + IKN N KI+ S + ++ I+ Sbjct: 166 --QANIVLLTHNA-ARSAVDRINGFLDTIKNNKNYKILASADTQGQIERALPKVDKIIEE 222 Query: 207 ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 +NI +V ND +GA+ A+ G + G +L IDG P+ K + +G + Sbjct: 223 Y---QNIDVVMGLNDPAAMGALAALDSKGAREG--VLVYGIDGSPEGKKLIKEGMMTGTA 277 Query: 267 ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +P G EK + + ++ Sbjct: 278 AQSPKQMADTAVNAAYQILQGEKVEKKKVISVQMITKKNVEQT 320 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 130/316 (41%), Gaps = 32/316 (10%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ------QKQENQIKAVR 73 P + + + ++ A++ GI + + + QI + Sbjct: 74 ATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTIL 133 Query: 74 SFVAQG-VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + +D + IAP + P++++A I V ++D ID +T VT DN Sbjct: 134 ELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ---ILTFVTFDNFE 190 Query: 133 EGKLIGDWLVKEVN-----GKPCNVVELQGTVGASVAIDRKKGFAEAIK---NAPNIKII 184 G+++G+W+++++ N++ L+G++ I+R++GF E +K +++I+ Sbjct: 191 GGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEIL 250 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 +S D+ K K + +++++ I ++ A +D M +GA +A++EA I+ Sbjct: 251 DLKSADWETKKAKMITQAWLEK---FPTIDVIMAADDQMAVGASEAVQEANKSG---III 304 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGT--------MPEKLTLT 296 DG P A+ G+ +A++ P L + + + Sbjct: 305 TGFDGTPYGLNAIKTGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQLIGQEQTE 364 Query: 297 KSTLYLPDTAKEELEK 312 S L D E L Sbjct: 365 NSLLITQDNINEALNP 380 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 130/319 (40%), Gaps = 14/319 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIAD 60 K + + ++A M+ A A T+G S + ++ ++ A + G +TL+I D Sbjct: 1 MKSIFTAAVLAALMAGTASAE--TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK- 119 Q Q+ V +F+A VDAI I + + A+ A IP+ L+ + ++ Sbjct: 59 AQADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRL 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKP----CNVVELQGTVGASVAIDRKKGFAEAI 175 V + G+L + + + K + L G + + DR E + Sbjct: 119 PKNQAYVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETL 178 Query: 176 K--NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 + I +S + R+ +V ++I G+ I ++A++D+M IGAIQA+K Sbjct: 179 AAGECKGVTIADERSAAWMRTNAMDVTTNWITT---GRPIDAIFANSDEMAIGAIQALKA 235 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 AG+ D++ ++ D AM DG+ + +V + G ++ Sbjct: 236 AGVSK-NDVIVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSVDRQ 294 Query: 294 TLTKSTLYLPDTAKEELEK 312 + L P+ + K Sbjct: 295 VMVPFELVTPENMAKYNNK 313 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 11/292 (3%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 + + T+G + + + K+ E +G L+ D + Q K V F+ + Sbjct: 42 SEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGMDAKVQAKQVEKFIEE 101 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 VD I I V L++AK A IPV +D I ++S TV ++N G+ Sbjct: 102 KVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALI--YNRSFVDGTVVSNNYQAGEQCA 159 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQSGDFTRSKGK 197 L+K K ++ L AIDR KGF E ++ A + + + Sbjct: 160 KDLMKR--RKKGKILFLV-QSENKSAIDRIKGFKETLEKAGWKYENVGELECQGQLELSQ 216 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 ++E + N K+I +V A ND +GA+ A+ + D+L DG P+ + Sbjct: 217 PLVEKVL---NKTKDIDVVMALNDPSAMGAMAALDAEHMLS--DVLVYGADGSPEAKTMI 271 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + + A+ +P G + DG EK + +L D + Sbjct: 272 YENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEKQCIVPVSLITKDNINDY 323 >UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0P6G6_9FIRM Length = 355 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 131/334 (39%), Gaps = 29/334 (8%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV------AKSEAEKRGITLKI 58 LL+ S + S P+ +G + + + + A+ + ITL I Sbjct: 24 LLLPSGCADKPSESMTPDPIRIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITLNI 83 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 DG Q Q + V F+AQG DAI + V T ++ +A+ A+IPV +R +D Sbjct: 84 LDGTGNQGTQNEQVDRFLAQGYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVGED 143 Query: 119 KSLY--MTTVTADNILEGKLIGDWLVKEVNGKPCNV----------VELQGTVGASVAID 166 + + V +D G + G +V + P +V V L+G G A Sbjct: 144 MQRWQNVYYVGSDPREAGDMQGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDATL 203 Query: 167 RKKGFAEAIKNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 R + A+ +A +++ + S+ ++ R++ M ++ E I +++ +NDDM + Sbjct: 204 RTESCIAALTSAGIDVEKLASEPANWQRAQASAKMAQWLADEELRDRIEVIFCNNDDMAL 263 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK 285 GAI A A + + + ID P A+ DG +V A L Sbjct: 264 GAIDAYHAA--EISELPVIVGIDATPPALMAIQDGSLAGTVRNDAQGQAQAIFDLAYALS 321 Query: 286 DGTMPEK--------LTLTKSTLYLPDTAKEELE 311 G P++ ++ +E + Sbjct: 322 TGANPQEAVPMLEGQYVWAPHSIVTIGNVMQEYD 355 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 136/305 (44%), Gaps = 17/305 (5%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++ T+G S S + A + K A G L + + Q+ V++ Sbjct: 20 ANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQNL 79 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 V Q V A+ A AT + EAK A IPV +D+ T + +D++ Sbjct: 80 VTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQGD----VTTFIGSDSVKAST 135 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + D+L K++ GK N+ ++G +G+S I+R KG ++ P+IK++ + + D+ +K Sbjct: 136 ELCDYLAKQMGGK-GNLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDENK 194 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 V + + A + ++A ND M +GA +A +AG K S+DG P +Y Sbjct: 195 AYNVAQDVLTAN---PELQAIFAQNDGMALGAAKAAAQAGRSNLK---IVSVDGFPQVYD 248 Query: 256 AMMDGEANASVELTPNMAGPAF--DALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 A+ G+ A++ P G A++ + +K L + L + LE+ Sbjct: 249 AIESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKEN----LEEA 304 Query: 314 KNMGY 318 ++ GY Sbjct: 305 RSAGY 309 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 37/336 (11%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M K L+ +S V S+A LT+G + + K+ + G+ K Sbjct: 1 MRKLLVFLSVVLITGLSLA----LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKFFV 55 Query: 61 GQ-QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 Q + Q++ + SF+A+GVD I IAP T P +K+A + IPV LD D D Sbjct: 56 PQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDT--DSPDS 113 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Y+ + DN G G + + + GK VV G++ A ++ R +GF +AI + Sbjct: 114 GRYV-YIGTDNYQAGYTAGLIMKELLGGK-GKVVIGTGSLTAMNSLQRIQGFKDAIAD-S 170 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI--KEAGLK 237 I+I+ + + ++ + E+ + A + VYA+N QA+ K AG K Sbjct: 171 EIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPS-----QALVVKNAG-K 224 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP----------------AFDALE 281 GK + D PDI + + +G A++ P M G L Sbjct: 225 VGK-VKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLP 283 Query: 282 KYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMG 317 K DG + + T + P+ E L+K + +G Sbjct: 284 KVTVDGK-VDYVIDTGVDVVTPENLDEYLKKMEELG 318 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 131/315 (41%), Gaps = 18/315 (5%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVA---KSEAEKRGITLKIADG 61 L +S+ S A T+ G+ + A + E +++GI + + Sbjct: 9 LTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIWK 68 Query: 62 ----QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + ++ QI+ V +F+ + V + +AP+ + A A+IPV + D ++ Sbjct: 69 GPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKTD 128 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK- 176 Y++ V DN G+L + + + + GK NV+ L+ VG++ +R+ GF + +K Sbjct: 129 K---YVSFVATDNYKGGQLAAERMGQLLEGK-GNVILLRYAVGSASTEEREAGFMDTLKS 184 Query: 177 NAPNIKIIRS-QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 PNIK+I S Q TR + ++ + G + ++ + + +A+++ G Sbjct: 185 KFPNIKVISSDQHAGATRETAYQASQNLL--NRFGHEVNGIFCPCEPPTVAMAKALRDIG 242 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLT 294 GK + D + +G+ V P G + ++ + G EK Sbjct: 243 KAGGK-VKMVGFDAGSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQ-GEKVEKRI 300 Query: 295 LTKSTLYLPDTAKEE 309 T + P+ ++ Sbjct: 301 DTGVQIVTPENMEQA 315 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 11/279 (3%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIA 86 G + + + + N K E G L D + Q + + + Q VDAIF+ Sbjct: 44 GATYMTMNNPFFEVINNEIKKAVEANGDVLITLDPILDVDKQNEQILDLIDQRVDAIFVN 103 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN 146 P+ A E LK AK A+IPV ++D I D+SL ++ ++N G L ++ + + Sbjct: 104 PIDAKKIEIGLKAAKKAKIPVIVVDAPI--YDESLVNCSIASNNYDAGVLCAKDMMSKRD 161 Query: 147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA 206 ++ L+ A A++R +GF + I + N ++I D M+ +K Sbjct: 162 H--AKIILLEH-ATAKSAVERIQGFLDTIASNANYQVINRADCDGQIEIAMPTMKQMLK- 217 Query: 207 ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 ++ +V A ND +GA+ AI+ + ++L +DG PD+ + + G A+ Sbjct: 218 --ETPDVDVVMALNDRSALGALAAIESMEI---DNVLVYGVDGSPDVKELINTGLIQATA 272 Query: 267 ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 +P G K + EK L D Sbjct: 273 AQSPVKMGQLAYQKAKALLENKKIEKKIEVPVELISRDN 311 >UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGU5_9FIRM Length = 356 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 119/297 (40%), Gaps = 12/297 (4%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 +G + + + G ++ I DG+ Q Q + + +F+ QGVD + I Sbjct: 61 IGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLVI 120 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY---MTTVTADNILEGKLIGDWLV 142 PV T + ++ + P+ ++R + Y V AD G G+ ++ Sbjct: 121 NPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELIL 180 Query: 143 K-----EVNGKP-CNVVELQGTVGASVAIDRKKGFAEAI-KNAPNIKIIRSQSGDFTRSK 195 + ++NG + +G A R + +A+ ++ + ++ ++ Sbjct: 181 ETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDNWDQTT 240 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++ + + + G I +V+ +ND M +GA+Q+I++AG GKD+ +D + + + Sbjct: 241 AQQDVANALSQY--GDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALVEAVQ 298 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 ++DG +V K +G EK D A + L++ Sbjct: 299 NVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEKYYWVDYVKVTKDNASQYLKE 355 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 117/284 (41%), Gaps = 11/284 (3%) Query: 27 GFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 G S+ + WR+ A+ G+ + A + Q Q+ + + QG + + Sbjct: 60 GVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGLLV 119 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 +P +P ++ A I V ++ ++ + + Y+ V DN G + W + Sbjct: 120 SPQTDNNLQPAMETAASRGIAVVNVNDAV-IPSATQYVGNVQRDN---GVRVAQWFIDNR 175 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIK 205 G V ++G G A R GF I A N +++ S +++R + + + ++ Sbjct: 176 PG-GGKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDAASTILQ 234 Query: 206 AENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 265 ++ YA+ND M +G ++A+K A L+ + + DG+PD Y ++ G+ + Sbjct: 235 QH---PDLIGFYANNDGMALGVVEAVKAANLQ--EQVSVFGTDGIPDAYASIRAGDLTGT 289 Query: 266 VELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 V+ P + G + G ++ T L D + Sbjct: 290 VDSFPVLTGEVAMEVVLRLLAGQGIPRVVATPQALITADNVADY 333 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 118/290 (40%), Gaps = 14/290 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAE---KRGITLKIADGQQKQENQIKAVRSFVAQ 78 F + + + + A++ A I + E QI+ V + Sbjct: 54 KTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITD 113 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G DAI I P +TG P +++A A IP+ + D +T + DN G +G Sbjct: 114 GADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGD---VLTWIGVDNYTVGYELG 170 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 L + + G VV ++GT G S + +R G+ +A KN P I+++ SQ DF R KG Sbjct: 171 TALCEALEG-TGKVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNREKGMT 229 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 VME+F++ I V + N DM +GAI+A K G K+++ + D D A+ Sbjct: 230 VMENFLQRY---PEIDGVGSINKDMTMGAIEACKAVGRD--KEMVQVTFDVDNDCLDAID 284 Query: 259 DGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G+ + A A +G TL D Sbjct: 285 AGDILITGAQEEKSQIANAIYACL-LACNGYKVAPEQYIPMTLVTKDNTN 333 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 16/292 (5%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG----ITLKIA--DGQQKQENQIKAVRSFV 76 PL +GF ++ ++ V K E +KRG I L + Q ++QI+A+ +++ Sbjct: 70 PLKLGFLPTAMDTYYQRVLAGV-KEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWI 128 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 G+DAI +A P ++ A +A IPVFL + D Y++ V D G+ Sbjct: 129 NDGIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPF--ADNPYYVSDVGYDQSDGGRA 186 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 W+V K + L+G G R KGF E I PN KI+ Q + R++G Sbjct: 187 QAQWIVDTYGDKEVKIGILEGLPG-PHTSQRMKGFNEIISKHPNFKIVAQQPAGWVRAQG 245 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 V E+ A +I ++ A D+M +G +QA+K GL + + + + A Sbjct: 246 LSVTENMFTAN---PDIEVLVALYDEMALGGLQALKAKGLNG--KVAIVGYENMKEANAA 300 Query: 257 MMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 ++ G+ +A+V+ G A++++ G K +Y K Sbjct: 301 ILTGDFSATVDTGAKEEGRNIVRAVDEFLMKGNPLPKKIFVSPKVYDATNIK 352 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 11/283 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ--KQENQIKAVRSFVAQGVD 81 ++V + + W + ++ A+ A+ G+ L IA Q+ E Q+ + + + + D Sbjct: 49 ISVYWVGKTLNNPWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKAD 108 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI ++ + G P +K+A++A I + D I D S+ V D++ G ++ Sbjct: 109 AIVVSAASSDGVIPAIKKAREAGIKIVNFDTRI--SDTSVIDAFVGGDDVAGAYKAGKYI 166 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +++ G+ V + G + S +DR GF +A P IK++ Q +++ K +V Sbjct: 167 CEQLGGE-GEVAIITGLMEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTT 225 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + + A N+ ++A ND M +G + A K A K D++ DG+ D MDG+ Sbjct: 226 NILTAN---PNVKAIFACNDQMAVGMVNAAKAA-GKKADDLILVGYDGILDAVNMTMDGD 281 Query: 262 ANASVEL-TPNMAGPAFDALEKYKKDGTMP-EKLTLTKSTLYL 302 +A V L + + ++ L TL Sbjct: 282 LDAFVSLPNLDEGAMGVKLATALVMNSDYHYDREILYDCTLVT 324 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 77/323 (23%), Positives = 131/323 (40%), Gaps = 25/323 (7%) Query: 1 MWKRLLIVSAVSAAMS--------------SMALAAPLTVGFSQVGSESGWRAAETNVAK 46 M K LL + +A +S S + + G + + + AK Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 47 SEAEKRGITLKIADGQQKQE--NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 E+ G+ + +++ E Q+ V + + + V A+ IA + V K+A DA+ Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV D ++ S + + DN + G + G+ L K +NGK V + G + A Sbjct: 121 IPVVTFDSNVKGDITS---SFIATDNKVAGAMAGEQLAKLINGK-GKVAIVSHNPGTTTA 176 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 I+R+ GF EA+ P+IKI+ +Q D +SK + I A +I +Y N+ + Sbjct: 177 IEREAGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINAN---PDIAGIYGTNEPSI 233 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYK 284 G + ++E GL ++ ID D+ K + G + V P G Sbjct: 234 FGIAKGVEEKGLTG--KVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYKL 291 Query: 285 KDGTMPEKLTLTKSTLYLPDTAK 307 G EK T + L + Sbjct: 292 SKGEKVEKRIDTGAILVTKENIN 314 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 121/307 (39%), Gaps = 18/307 (5%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA--DGQQK 64 ++ + S +A + + A ++EA+ G+ + I + Sbjct: 10 CLAILGLVCSVSVYSAEY--AVILKTLSNPFWVAMKEGIENEAKALGVDVDIFASPSEGD 67 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD----KS 120 ++Q++ + + I AP+ +A I + LD ID+K+ K Sbjct: 68 YQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKNLQKAKG 127 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 +T DN+ G ++V ++ + V ++G G + R++G E + + Sbjct: 128 NVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVAIIEGKAGNASGEARRRGAREVFVKSSS 187 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK++ SQ D+ R K +V + + N+ Y ND M +G QA+ AG + Sbjct: 188 IKLVASQPADWDRIKALDVATNVLSRN---PNLKAFYVANDTMAMGVAQAVINAGKQG-- 242 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-----AFDALEKYKKDGTMPEKLTL 295 IL DGVP+ K + + + A++ P M G DA K+ E Sbjct: 243 KILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAARAGKQIPVDVEPKIE 302 Query: 296 TKSTLYL 302 T ++ + Sbjct: 303 TVDSILI 309 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 10/301 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++++ +G + ++ + + E+ + L + D Q QI +++F Sbjct: 47 NTVSEGDSFLIGVASPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTF 106 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY----MTTVTADNI 131 +A+G D I + PV P+ E +AEIP+ +DR + D +T V D++ Sbjct: 107 IAEGCDLIIMMPVQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDV 166 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNAPNIKIIRSQSGD 190 G+ G+ V ++ G ++ +QGT+GAS + R++G E + +NAP I+I+ +Q+ D Sbjct: 167 EGGRKQGEL-VHQLLGDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSD 225 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 +S+ V ++F+ G I + A + +GA+ AIK A D Sbjct: 226 QDQSQAITVTQNFLTRFAKG-EIDAIVAQDPYSALGAVDAIKSASRDEL-LGTVIGYDLP 283 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEK--YKKDGTMPEKLTLTKSTLYLPDTAKE 308 ++ ++ + S P G + + E T T+ + + A+E Sbjct: 284 SEVLDSIKAKDMYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIENARE 343 Query: 309 E 309 Sbjct: 344 Y 344 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 85/315 (26%), Positives = 130/315 (41%), Gaps = 17/315 (5%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ--QKQENQIK 70 AA + + + T+ + + + N AE G + Q E+Q++ Sbjct: 48 AATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVR 107 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 V + GVDAI I PV + G P L++A DA IPV + + + T AD Sbjct: 108 LVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVLVQGTQANTDKIYGWYGTKYAD- 166 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 E LI ++L ++++ K NVV + G A AID + P++ +I Q G+ Sbjct: 167 --EATLIAEYLAEKLDYK-GNVVYITGPQQAQNAIDEINATHAVFEKYPDLNLIEEQPGN 223 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD---ILTGSI 247 F R+ VME+ I+ + +I V ND+ +GAI A++ AG K G + I I Sbjct: 224 FNRATSMSVMENLIQKYSE-DDIDWVIGGNDECAMGAIAAMENAGWKLGFEDGGIGVSGI 282 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGPAFDA-LEKYKKDGTM-PEKLTL-----TKSTL 300 D D AM +G SV P G A L Y DG + PE + + Sbjct: 283 DCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDFQTADDVV 342 Query: 301 YLPDTAKEELEKKKN 315 +E Sbjct: 343 IDASNIDNYIENLAW 357 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 121/312 (38%), Gaps = 23/312 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAA------------PLTVGFSQVGSESGWRAAETNVAKSE 48 M KR+ +V +++ M M A L + GS + AA N + Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 + I + + DG Q A+++ ++ G D I I+PV + + EA DA I V Sbjct: 61 EKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVC 120 Query: 109 LLDRSIDVKDKSLYMTT-----VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 L I D + V G+ D + ++ + + ++GT G S Sbjct: 121 ALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEALD-RSGKIAIIEGTPGMSD 179 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 RKKG E K P+I+++ G++ K M++ I++ + +V H+D+M Sbjct: 180 TEGRKKGIDEENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSN---PEVELVICHSDNM 236 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 +GA +A+++A + + I G D + GE ++ P Sbjct: 237 AVGAAKALEDADMT--DKVKIVGIGGSKDALDLIKKGEIYGTIMYVPETEAYTALEATAK 294 Query: 284 KKDGTMPEKLTL 295 G ++ Sbjct: 295 VVRGEAEKETFY 306 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 66/305 (21%), Positives = 110/305 (36%), Gaps = 16/305 (5%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 I A S A P+ +G + S + + E+ A+S + G + + + Sbjct: 24 IGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANEDVQ 83 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 Q + F+ GV I I G P +K A A IPV +D + Sbjct: 84 TQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQ-----SKNATVNI 138 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 T DN G++ L ++ GK + L GT S DR G + P+IKI+ Sbjct: 139 TTDNKQAGEISCRSLADKLGGK-GKIAILNGTP-VSAVDDRVTGCKGILGQYPDIKIVAD 196 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q G+ +R + + A ++ +A ND +G A ++ G ++ S Sbjct: 197 QRGENSRDSALPIATDILTAN---PDLDGFFAINDPSAVGVQLAAEQKGAS----VVITS 249 Query: 247 IDGVPDIYKAMMD-GEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 +DG A+ G A+ P + A D +K+ L + L Sbjct: 250 VDGASSATDAIAAGGLITATAAQDPAALMRQAIDLGISIVNGKEPDQKVILVPTELVDAS 309 Query: 305 TAKEE 309 + Sbjct: 310 NVAKY 314 >UniRef50_Q2RKM1 ABC transporter substrate-binding protein n=3 Tax=Bacteria RepID=Q2RKM1_MOOTA Length = 358 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 73/308 (23%), Positives = 127/308 (41%), Gaps = 12/308 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++ L FS G ++ W A + + + G+ + DG + Q AV Sbjct: 41 TTAKEGKRLKAAFSNAGLQATWCAQGKDTVERWGKWLGVDITWYDGALSVDKQRAAVEDM 100 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + D + I P+ +K+ + IPV +D I + + DN+ + Sbjct: 101 ATKDWDFVAIQPLGIGTLNEPVKKMLERGIPVIDMDTMIAQPGELPITCFIAPDNVWGAE 160 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + + L++ + GK NVV QG++G + A R +GF IK P++K+I DF +K Sbjct: 161 QVTEALMQAIGGK-GNVVMTQGSLGHTGAQGRAQGFHNVIKRYPDVKVIDETPADFDVNK 219 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++ E+ + N I Y HNDDM + A Q IK AG + K+I G DG+ + Sbjct: 220 VAQIWENLL---NRYDKIDAAYFHNDDMALAAYQVIKNAGRE--KEIKIGGNDGMQPAVE 274 Query: 256 AMMDGEANASV-----ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 A+ G A+ + + A + + +P L + + + Sbjct: 275 AVQKGIMVATARNSAPRIHWGALMIGYYAATEKDANKKIP-PFILADGPIITYNVDQSNK 333 Query: 311 EKKKNMGY 318 + N GY Sbjct: 334 QPWLNKGY 341 >UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM Length = 384 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 123/307 (40%), Gaps = 19/307 (6%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT---LKIADGQQKQENQIKAVRSFVAQ 78 + VG + ++ +G +KI DG Q Q + +F+ Sbjct: 77 SDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIKIMDGANDQATQTNQIENFITD 136 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY------MTTVTAD--- 129 VD + + PV ++ + + + A IP+ ++R D ++ + +T V D Sbjct: 137 KVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQDEEKRWEEKNWDVTYVGCDARQ 196 Query: 130 -NILEGKLIGDWLVKEV---NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKII 184 +G++I + ++ + + ++G A R + +A+++A + + Sbjct: 197 SGTFQGEIIASVGMDKLDMNGNGKVDYIMIKGDPENIDAQYRTEFSVKALQDAGMEVNKL 256 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 Q G++ ++ + ++ + + GK+I +V+ +ND M +GA+QAI+ AG GKDI Sbjct: 257 DEQVGNWDQALAQSLVANALAKN--GKDIEVVFCNNDSMALGALQAIQAAGRTVGKDIYL 314 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 +D + + + ++ G +V A G + D Sbjct: 315 VGVDALEEACQNVLAGTQTGTVFNDFLTQSHAAGDAAINYLGGKGNDHYIGCDYVKVTKD 374 Query: 305 TAKEELE 311 A++ L Sbjct: 375 NAQDVLN 381 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%) Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 + ++ A + QI + F+ +G D I ++P A PV+ +A D + V L+DR Sbjct: 14 NVRVEFASAKDNNRVQIAQIERFIDKGADLIIVSPNEAKALTPVINKAFDRGVRVVLVDR 73 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 Y + ADN+ G+ +G ++ + + GK V+ELQG G+S AI+R GF Sbjct: 74 K---SASDKYTAFIGADNVAIGRAVGRFVGEHLGGK-GRVMELQGLRGSSPAIERDSGFR 129 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EA+ + P IK++ + D+ K + K +V+A D M IGA QA + Sbjct: 130 EALAHYPQIKVVANAHADWFALKAETEATRMFKTVGEA---DLVFAQCDRMGIGAHQATQ 186 Query: 233 EAGLKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 + G+K + +D +P D +A+ +G A+ + P +G Sbjct: 187 KLGIKG---VKIVGVDALPTPGDGIEAVKNGTFLATF-VYPTHGDEVLKLAMNIL-EGRP 241 Query: 290 PEKLTLTKSTLYLPDTAKEELEKKKNM 316 + T+ ++ + + A+ L++ + Sbjct: 242 FRRETILQTGVIDANNAESALQQWAEL 268 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 14/303 (4%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGI---TLKIADGQQKQENQIK 70 A + T+G+ + W ++ AE+ + + + QI Sbjct: 37 ATTRADPGGKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQIS 96 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 V+S +++ VDAI + P+ + PV+++A A IPV L+ D +D + V AD+ Sbjct: 97 NVQSMISRRVDAIIMTPISPSASVPVIQQANRAGIPVILVAGQADTRDTA---AEVRADD 153 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 I+ G+ +WLV+E+ G+ + L G G S R KG + P+I+++ Sbjct: 154 IVFGRTGAEWLVRELGGR-GKIYVLNGLPGFSTDTLRWKGAKDVFDRYPDIEVVADAHAA 212 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 + ++ K + + + A + V++ M +GAIQA + AG KP + + +G+ Sbjct: 213 WDTARAKTAVSNMLAAH---PEVDGVWSQGGAMTLGAIQAFRAAG-KPLVPMTGENNNGL 268 Query: 251 P---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 D D ++ + P G G K+ L D Sbjct: 269 MKVWDSLNRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEVRKVNLVNPAPITSDNLA 328 Query: 308 EEL 310 + + Sbjct: 329 DYV 331 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 122/306 (39%), Gaps = 11/306 (3%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 ++ A+ A LT+G S + S + A T + + G+ + ++ ++ Sbjct: 20 LLPAILPACGFSESHHKLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVSAEEDEQ 79 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR----SIDVKDKSLY 122 Q+ V + + QG+D + + P + +L+ A A IPV ++DR + + Y Sbjct: 80 KQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQNKNADY 139 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 + + +N G I + + G + L G G SVA RK G A+ A + Sbjct: 140 VAFLGPNNEKAGSGIAE---ALMAGGGSKFLALGGMPGNSVAQGRKAGLESAL-TAVGHR 195 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 +++ Q + KG E+ ++A G + ++ ND + GAI+A+ A + K+ Sbjct: 196 LVQFQYAGDSEDKGLAAAENMLQAHPAG-DANAIWCFNDKLCQGAIKAVYNANRE--KEF 252 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 + G +D P A+ +G S+ G L + E++ Sbjct: 253 IFGGMDLTPQAIAAIENGLYTVSLGAHWLEGGFGLAILYRKIHGQDPAERMVKLDLLKVD 312 Query: 303 PDTAKE 308 + Sbjct: 313 KSNVAK 318 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 11/297 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ--KQENQIKA 71 ++ + + + S G + A++ A++ G + Q Q+ Sbjct: 21 SVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNV 80 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 + FV + +DAI +A A P LK A +A IPV +D I+ ++ + +N Sbjct: 81 INDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINAD---FPISHIATNNK 137 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 K + L + GK V + GA+ +I R+ GF E I N NI ++ Q Sbjct: 138 EAAKKAAEVLA-NIIGKKGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQS 196 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 + +V E+ + A N+ ++A N+ +GA +A+K G D++ D Sbjct: 197 DYATAMKVTENILTAH---PNLKGIFAANEAGAVGAARALKARGKTA--DVILVGFDAAQ 251 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 AM +G +A + P M G +G EKL T + PD + Sbjct: 252 TEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMND 308 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 193 bits (490), Expect = 8e-48, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 14/271 (5%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 +V A S P VG S + + + K EA K+ +T+++ G+ Sbjct: 19 LVLGACAQNGSEGGNRP-VVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAGEFDLA 77 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 Q + ++ Q V AI + P + G P + A A+IPVF D + ++ + Sbjct: 78 RQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAK---EGAVVSHI 134 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 +DN+ G+L G++ K +NG+ V + I+R +GF EA+K PNI+++ Sbjct: 135 ASDNVAGGRLAGEYAAKRLNGRGQ--VAIIDQPYIQSVIERVRGFEEALKPYPNIRVVAR 192 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 +GD R + + E ++++ + V+A ND+ G + AI+ AG K I Sbjct: 193 LTGDGVRDRSLKAAEDLLQSQR---KLDAVFAVNDESAFGVVSAIEAAGRKG---IFVMG 246 Query: 247 IDGVPDIYKAMMDGE--ANASVELTPNMAGP 275 D + K + G+ A + P G Sbjct: 247 YDASEEARKLIAGGKSPLQADIAQDPYRIGQ 277 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 144/315 (45%), Gaps = 13/315 (4%) Query: 1 MWKR-LLIVSAVSAAMSSMALAAPL-TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M R +L+ +A+++A+S A AA T+ ++ + A+E A +A++ G + Sbjct: 1 MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 + + Q + + + + + V I + +T +K+AK A IPV L++R I V D Sbjct: 61 LSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIPVDD 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 +L +T +N G + + V+++ G+ EL ++ + + R K F + + Sbjct: 121 VALV--QITHNNFQAGSDVANVFVEKM-GEKGKYAELTCSLADNNCVTRSKSFHQVLDQY 177 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P + I Q T GK +M+S ++A ++ V N + +GAI A+K AG Sbjct: 178 PGMASIARQDAKGTLIDGKRIMDSILQAH---PDVKGVICGNGPVALGAIAALKAAGRN- 233 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVE-LTPNMAGPAFDALEKYKKDGTMPEKLTLT- 296 D++ IDG D A+ +G A+V +A L+ + + G P K + Sbjct: 234 --DVVVVGIDGSNDERDAVKEGSLKATVMLQAQAIAAQGVTDLDNFIQKGAKPAKQRVMF 291 Query: 297 KSTLYLPDTAKEELE 311 + L D A + + Sbjct: 292 RGILIQQDNASKVQD 306 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 16/301 (5%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 +G S + + AA+ AK+ ++ G + D Q K + QI V V +GV Sbjct: 34 GAFKIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVK 93 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + I P + G + A + V ++D +++ ++ ++T V + N + G L+G W+ Sbjct: 94 LLIINPADSEGLVNAVNNASANGVKVVVIDSTLN--PRANFVTQVQSSNSINGALVGHWV 151 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-------PNIKIIRSQSGDFTRS 194 ++EV K + L G G V +R+ G I A ++ ++ G + Sbjct: 152 IEEVGNKSLKIALLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDE 211 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 G + ME + A K+I MV ND MV+GA +AI+ AG +L + D + Sbjct: 212 GGLKAMEDLLVAN---KDINMVLGENDSMVLGARRAIESAGRTG--ILLVAAADAQKEAL 266 Query: 255 KAMMDGEANASVELTPNMAG-PAFDALEKYKKDG-TMPEKLTLTKSTLYLPDTAKEELEK 312 + G+ + P + A D K K K TLT + Sbjct: 267 ALIKQGKYGVTGLNDPALVARTAIDLGVKVVKGEVKDVPKQTLTTPAAITKGNVDKFYNP 326 Query: 313 K 313 K Sbjct: 327 K 327 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 21/316 (6%) Query: 3 KRLLIVSAVSAAMSSMALAA-PLT-VGFSQVGSESGWRAAETNVAKSEAEK---RGITLK 57 + ++ +AV A +++ + AA PL VG + + + A A+ A+K G+ + Sbjct: 4 RYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGVKVT 63 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + Q+ + +F+A VD I + G EPVLK+A+ A I Sbjct: 64 TVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGIA-----VVAVDV 118 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 TV +DN + G ++ +++ G+ NVV + G +V+ R G + + N Sbjct: 119 GAVGADATVMSDNAMAGAESCKFMAQQLGGR-GNVVIVNGPPVTAVS-ARVAGCKKVLGN 176 Query: 178 APNIKII-RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P IK++ +Q +R G E M + + A K I V+A ND IGA A+K+AG Sbjct: 177 YPGIKLLSDNQDAHGSRDGGMETMANLLTAH---KKIDAVFAINDPTGIGAELAVKQAGR 233 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTMPEK-L 293 K L ++DG PD KA+ D + S P + +G P K Sbjct: 234 SDVK--LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKRPAKSQ 291 Query: 294 TLTKSTLYLPDTAKEE 309 L + Sbjct: 292 VLLPTPAVTKANVASY 307 >UniRef50_Q89KM1 ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89KM1_BRAJA Length = 352 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 12/291 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 PL FS G ++ W A A+ + + + DGQ Q A+ + +Q D Sbjct: 58 KPLKAAFSNAGLQATWCAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWD 117 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + I +++ DA PV +D I D+ + + DN G + L Sbjct: 118 FVAIQAFGIGTLTQPVQKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQAL 177 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + GK ++ QG +G + A R KGF +K P I+++ +Q D+ SK + E Sbjct: 178 CNAMGGK-GKIIMTQGALGHTGAQGRAKGFNNVVKQFPGIEVLDTQPADWDVSKTARLWE 236 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 +++ I + HNDDM + A +K G +IL G +D +P +A+ +G Sbjct: 237 TYLTKY---PQIDAAFFHNDDMALAAANIMKARGRT---NILIGGVDAMPPAIQAVSEGR 290 Query: 262 ANASV-----ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 A+V + A+ +K G K +T + A Sbjct: 291 MFATVRNPSCRIHGGAIIAGVSAVVGGEKSGQGIPKNVVTDGPVVTKANAA 341 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 17/305 (5%) Query: 1 MWKRLL---IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK 57 M+++ L + S V+ AM + A +A +G S + + + A + K EA+ + L+ Sbjct: 1 MFRKSLSRILFSGVALAMMAGAASAE-GIGASLLTQQHPFYIALADAMKKEAQAENVPLE 59 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 ++ Q Q+ V F+ +GVD I I+PV + G + +A+ A I V +D + Sbjct: 60 VSIANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANNV 119 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 D + V DN G+ + + K + G+ NV + +DR +GF + I Sbjct: 120 D---VTSFVGTDNFAGGEKAAELMAKTI-GEKGNVAVIDY-PTVQSVVDRIEGFKKGIAK 174 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 P+IKI+ Q G TR + ++ ++A +I ++ DD + A A+K A L+ Sbjct: 175 YPDIKIVAIQPG-ITRPEALSAAQNILQAN---PDIVGIFGFGDDAALAAASAVKSAKLE 230 Query: 238 PGKDILTGSIDGVPDIYKAMMDGE-ANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTL 295 + DG+ + A+ + + P+ G A + K K +P K + Sbjct: 231 --NQVKVIGFDGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPI 288 Query: 296 TKSTL 300 + Sbjct: 289 VPGVV 293 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 130/290 (44%), Gaps = 8/290 (2%) Query: 22 APLTVGFSQVGSE-SGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 + +G + + + ++A A + A + GI + D Q Q ++ +Q + Sbjct: 57 SETRIGITVLYPGSNSYQAMYAETAAAYAAELGIMATVMDPQGDPAIQFDQIQDMASQNM 116 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 DAI + P P +++A + IP+ + I + + D+ + + Sbjct: 117 DAIVVWPTSQNALIPAIRDASRSGIPIITSNSPIGEAGRRYILGHTGPDDCALAEQAAEM 176 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGKEV 199 L + G+ N+V ++GT G SV+I R F + + + P++ ++ SQ+ ++ R K + V Sbjct: 177 LGSAIGGE-GNIVVVEGTPGYSVSILRGNCFLDKLADDFPDVNVLDSQTAEWNREKAQTV 235 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 ME+F+ G I VYA +D M +G + A++ AG G D+ S + + + AM + Sbjct: 236 METFLTR--FGDQIDGVYAFDDGMALGVVSALQAAGRSAG-DVKIVSCNQFGEGWDAMKE 292 Query: 260 GEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 G + S + +P + A A + +P + ++ + + E Sbjct: 293 GWISGSGKQSPIDDAILAIQTAVRVANGIEVPALQEIERAQI-TAENVDE 341 >UniRef50_C8XIB8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=C8XIB8_NAKMY Length = 332 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 3/278 (1%) Query: 32 GSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVAT 91 G++ + ++EA+K GI L I + Q + Q + VA + I + P VA Sbjct: 50 GTDQPYGTEYLKAMQAEADKDGIDLTITNSQYDADKQASDCQVAVAAKPNLIILWPAVAD 109 Query: 92 GWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCN 151 P L+ AK A IPV + + ++ DKSL + D I +G + + G+ N Sbjct: 110 AVRPCLERAKAAGIPVTVTNSDVEADDKSLVVAYSGPDTIGQGAASAEIMCDLAKGQALN 169 Query: 152 VVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNG 210 ++E+ G G + AI+R KGFA+ I + PN+K++ +Q GD+ + + V + + Sbjct: 170 ILEIDGLTGNTTAINRAKGFADTIASTCPNVKVLAAQPGDWNKDDAQTVTSEMLTSVGAA 229 Query: 211 KNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP 270 N+ +YA +D MV GAI A+K + P K ++ SI ++ GE + +V + Sbjct: 230 -NVQGIYAADDTMVAGAIDALKAQNIDP-KSLIITSIGNTKLGNPLVISGELDGTVFQSS 287 Query: 271 NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 + G + G S A + Sbjct: 288 SWDGQNAIVVANKVLSGEQVSGDLFMPSVKVTSANATD 325 >UniRef50_D0B1Z2 Periplasmic binding protein/LacI transcriptional regulator n=47 Tax=Rhizobiales RepID=D0B1Z2_BRUME Length = 320 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 138/324 (42%), Gaps = 24/324 (7%) Query: 1 MWKRLLIVSAVSAAMSSMA-------LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR- 52 M + L+ ++ + ++A +T+G S ++ GW A A+ A+ Sbjct: 1 MRRNLMKLAFAALTAGALAFAGAASAQDKKVTIGVSIPAADHGWTAGVVYHAERVAKLLM 60 Query: 53 ----GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 G+ + + +Q A++ QG+D + + P +KE KD V Sbjct: 61 EEHPGLNVIVKTSP-DAASQANALQDLAVQGLDGLVVLPTDPDPLVNAIKEIKDKGTFVA 119 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 L+DR+ D ++ V + G++ G+++ VV ++G + R+ Sbjct: 120 LVDRAPSNNDNTIRDLYVAGNKPALGQVAGEYIKATTPD--AQVVVIRGLP-IPIDQQRQ 176 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 GF + I N+K++ Q G++ R VM+ F+ I +V+A +DDM++G + Sbjct: 177 DGFDKGI-EGSNVKVLDRQYGNWNRDDAFRVMQDFLTKY---PKIDVVWAQDDDMLVGVL 232 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKD 286 +AIK++ + ++ G+ G D+ K +MDG+ V P M A + + D Sbjct: 233 EAIKQSNRSDIQYVVGGA--GSKDMIKRVMDGDKLVPVDVLYPPAMVSTAMELAAGHFYD 290 Query: 287 GTMPEKLTLTKSTLYLPDTAKEEL 310 + +TL D AK+ Sbjct: 291 QIPVSGDYILDATLVTEDNAKDFY 314 >UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1U2_CLOB8 Length = 315 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 9/301 (2%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQK 64 LI+ A+ ++ +G SQ WR + + E +K I + D Sbjct: 20 LIIFAIYLYRTNSQKKDTFIIGMSQANLYEPWRISMNKEIQEEVKKHSNIKIIFKDAGGD 79 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 E Q + + + G D + ++ + P +++A ++ +PV LLDR++D D +LY Sbjct: 80 VEKQREDIEDLMNFGADLLIVSINNSKELTPTVRKAYES-LPVILLDRAVDGYDYTLY-- 136 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + AD G G+ + NV+E+QG + +S + GF EAI N NI I Sbjct: 137 -IGADTRSIGVQAGELIANLAGNNKANVIEVQGILDSSTDKEITDGFKEAISNYKNIAID 195 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 R+ G++ +++ ++ +E +K + K++ +++AH+D M +GA A K K I Sbjct: 196 RTIVGNWQKNETEDKLEEILK---DDKDVNIIFAHSDYMALGAYYATVSTNSKNIKIIGV 252 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 ++G + +G + A D K K L K D Sbjct: 253 DGLEGPQGGIDLVRNGILQGTFTCK-TGGKEAVDYAIKILNKKDDIPKKVLLKCNKITKD 311 Query: 305 T 305 Sbjct: 312 I 312 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 10/290 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 S+ + + G + + + + + + +S E G L D + Q++ + F Sbjct: 36 SARQIGSRKKFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEF 95 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + V AIFI PV +P L AK+A IPV ++D + D L TV +DN G Sbjct: 96 IKLKVKAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPV--YDDKLVACTVISDNYDAGV 153 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 +L+K + N++ ++ + A IDR KGF + I + KI+ + + K Sbjct: 154 QCAKYLMK--SKSKANIMLIEHSK-AKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQLDK 210 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 +++ IK N+ + A ND +GA+ A+KE GL ++ +DG P+ Sbjct: 211 TMSLVDDLIKKHT---NVDAIMALNDPSALGALAALKENGLLG--KVMVFGVDGSPEAKT 265 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 + DG A+ PN G G ++ + +L + Sbjct: 266 MIHDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDVIVPISLISKEN 315 >UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD9_9CLOT Length = 369 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 13/293 (4%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG--ITLKIADGQQKQEN---QIKAVRSFVA 77 L VG V + + N AK + E +G I L + Q + S + Sbjct: 78 TLKVGLIPVTMNTAY-TMTINGAKKQIEDKGLDIELLVQAPASNTSTITEQGNIMESMIQ 136 Query: 78 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLI 137 QGVDAI +A P L+ A +A+IPVFL + + KD Y++++ D G I Sbjct: 137 QGVDAIALATESDNSMLPYLRAAAEADIPVFLFNMTELDKDNIYYVSSIGYDQYNAGLEI 196 Query: 138 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 G ++ + K + L+G G V R GF I+ NI+I+ SQ+ D+TR KG+ Sbjct: 197 GKYVAEHYGDKEVKLAILEGYAGI-VNTMRIDGFKAGIQGKDNIQIVASQTADWTREKGQ 255 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 V ES + + +I +++ D+MV+G + +IKE GL D + D A+ Sbjct: 256 SVTESILTSN---PDINLIFGDYDEMVLGGLVSIKERGLLDQIDTIGYGC--TKDGVAAI 310 Query: 258 MDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + E A++++ G DA+ + +G EK+ S +Y + E Sbjct: 311 ENNEMTATIDVGEYGTGIDIIDAVNDFCIEGKSVEKVINRPSKVYDKNNIGEL 363 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 132/303 (43%), Gaps = 15/303 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + + I A+++A ++ V S + + A N K A+ + I LK++ Sbjct: 4 LKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKVSV 63 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q QI + + + VDAI I+PV + G LK+A+ A IPV +D + S Sbjct: 64 ANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAE---NS 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 ++ + DN G + G VK++ GK VV L G S R +GF +A+ + + Sbjct: 121 KIVSHIATDNYGGGVVAGKLAVKQLGGK-GQVVMLSY-PGISSVEARLQGFRDAVADT-D 177 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IKI+ Q G TR + + ++A + +++A DDM+IGA A+ + K Sbjct: 178 IKIVAVQPGK-TREESMTSTINMLQAN---PDTDLIFAFGDDMMIGAGLAVTKQKSKA-- 231 Query: 241 DILTGSIDGVPDIYKAMMDGE-ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 + DG+P+ KA+ + + V+ + G + +G + Sbjct: 232 --VVIGFDGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPIVPV 289 Query: 300 LYL 302 LY Sbjct: 290 LYT 292 >UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 Tax=Rhizobium etli GR56 RepID=UPI00019034CB Length = 854 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 126/275 (45%), Gaps = 11/275 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQ 62 + +++++ A+S +++A T+G S + +R N S + G+ L + Sbjct: 2 KTATLASIALAIS-VSVANAQTIGVSMTNLD-KFREMLVNGVDSHGKTISGLKLVTQNAN 59 Query: 63 QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI-DVKDKSL 121 E Q K V+ FVA VDAI + + K A DA IP+ ++ + ++ D Sbjct: 60 GDNELQKKQVQQFVADKVDAIIMMLSDGDLGPQMTKIAADAGIPLIYINTTPSNLLDLPD 119 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK--NAP 179 V +D G L + + GK VV L G V A R + A+ I Sbjct: 120 NQVVVASDEKDSGTLETKQVCSLLKGK-GRVVVLMGEVFHVAARTRTQDIADVIATPECK 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 ++I+ Q+ ++R + M+ ++ A G V A+ND+M +GAI+A+K+A + P Sbjct: 179 GLEIVEQQAAYWSRDYADQQMQEWLAA---GVKFDAVIANNDEMALGAIRAMKKANI-PM 234 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 KD++ +D D AM+ G+ + ++ + G Sbjct: 235 KDVVVAGVDATDDALAAMVAGDLDVTILQSAVGQG 269 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 16/309 (5%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR----GITLKIAD 60 L SA S A +G + + A+ A + T + Sbjct: 34 LAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGIN 93 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---K 117 ++ QI + V + D I +AP + + +A A I V +D ++D K Sbjct: 94 DERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATKK 153 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + DN K+ G+ L K + G V L+G A A+ R+ GF +AI + Sbjct: 154 AAGIDLAFFGPDNRAGAKMSGEVLAKAL-GAGGKVAVLEGNPEADNAVQRRLGFDDAIAD 212 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 + ++ ++SG + S+G+ + +++K ++ + ND M GA+QA++ A L Sbjct: 213 GS-LNLVVAESGHWETSEGQSITAAWLKKY---PDLQGIMCANDSMAFGAVQALEAANL- 267 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELT-PNMAGPAFDALEKYKKDGTMPEKLTLT 296 I D +P + + DG+ A+VE MA D + K T Sbjct: 268 -LDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKF-SGWIRT 325 Query: 297 KSTLYLPDT 305 + L D Sbjct: 326 ELKLITKDN 334 >UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Proteobacteria RepID=A5FXE6_ACICJ Length = 328 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 13/299 (4%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A+ S + T+ + + AE A EA K G +A Q+ ++ Sbjct: 31 AIHSQKGSNGKTIAIFVPSLSNPFFVAEEKFAAEEATKLGYGTMVASHNGNAYTQLNLIK 90 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + +A+ V AI + A +K A A +PVFL+DR I+ K + + ++N Sbjct: 91 TAIARHVAAIILDNAGADSSISAVKLATKAGVPVFLIDREINAK--GIAKAQIVSNNFQG 148 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 +L G K + K VEL G + A R +G A +K+ +K++ Q+ D+++ Sbjct: 149 AQLEGTEFAKLMGYK-GTYVELTGLPSDTNAKVRSQGVASVLKHFSGMKMVAVQTADWSQ 207 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 SKG +V ++ ++A +I + A ND M +GA A+ A +++ DG PD+ Sbjct: 208 SKGFQVTQTLLEAH---PHIKGLIADNDTMAMGAEAALLAAHKP---NVIVTGFDGSPDV 261 Query: 254 YKAMMDGEANASVELT-PNMAGPAFDALEKYKKDGT--MPEKLTLTKSTLYLPDTAKEE 309 ++ G+ A V + A +KY + G PEK L TL + Sbjct: 262 INSIRKGQIKADVLQPIATFSREAVIEADKYIRTGKTGKPEKQEL-NCTLITKANVGDY 319 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 13/287 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 +GFS + E+ + + K E + + L + D + + Q ++ + +G++AI Sbjct: 61 WKIGFSGIDMENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGINAI 120 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 ++PV P L+ K+A++ + +D + K+ + +DN G L G+ L+K Sbjct: 121 ILSPVDWEKITPSLEALKEADVKIVNVDTQV--KEMDYVDAYIGSDNYNAGVLCGEDLIK 178 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQSGDFTRSKGKEVMES 202 V L+ SV +R GF E + A N +I+ + K E + Sbjct: 179 RC-PDGGKVAILECPTQNSVN-ERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQK 236 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM--DG 260 + + +I + ND M +GA A+ + IL +DG PDI K + + Sbjct: 237 ILSENS---DIVAIMCGNDQMAVGAKTAM---NVAEQGQILIYGVDGSPDIKKELKKTEN 290 Query: 261 EANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 + +V +P G +G EK + + Sbjct: 291 QIAGTVAQSPISMGKDAANTVLNILNGKDYEKEIKENVFMINQENVD 337 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 145/304 (47%), Gaps = 16/304 (5%) Query: 1 MWKRLLIVSAVSAAMSSM-----ALAAPLTVGFSQVGSESGWRAAETNVAKS--EAEKRG 53 M R ++A++A+ + A + + G + A + ++ ++ Sbjct: 1 MINRRTFIAAIAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGK 60 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + + + DG+ Q + + + Q +AI +AP P + +A +A++PV + + Sbjct: 61 VEITVFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVIV--SA 118 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 + K+ Y ++ D+ G++I + + K + N+V ++G +G S I+R+ G Sbjct: 119 LKTSSKN-YTASIIVDDREGGRIIAEEMAKRL-PSGGNLVLMEGPIGQSAQIERRAGVDA 176 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 ++ N+K++ +SG+++R++G+ +ME+++ A I V A ND+M +GAI+A+K Sbjct: 177 GLEAHSNLKLLADKSGNWSRAEGQALMENWLSAYP--DQINGVLAENDEMALGAIEAMKA 234 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD--ALEKYKKDGTMPE 291 A + K + +IDG+PD +A+ +GE ++ G AL + P+ Sbjct: 235 ANVDLSK-VPVIAIDGIPDAKRAVENGEMAVTLYKYARAEGQGAVDLALRQVIGTEYKPQ 293 Query: 292 KLTL 295 Sbjct: 294 SEVW 297 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 136/368 (36%), Gaps = 63/368 (17%) Query: 1 MWKRLLIVSAVSAAMSSMALAA--------------------------PLTVGFSQVGSE 34 M +R + A++ ++++ A T+G S Sbjct: 1 MKRRQFALFAITLMLATLIAACGGTPTTTAPTAAPAPQPTTAPAPEGRKFTIGISNPFIS 60 Query: 35 SGWRAAETNV---AKSEAEKRGI--TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 89 S +R E +RGI L I QI+ +++ + +GVDAI + P Sbjct: 61 SEYRTQMIQSLIEVNKEYMERGITNELVIESADTDVAGQIQQLQNLINKGVDAILVNPSD 120 Query: 90 ATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKP 149 G L+EA + I V +D+ ++ + V D K+ WL +++ G+ Sbjct: 121 VNGLNDTLQEAINKGIIVISVDQELNTPG----VYNVGIDQKEWAKISARWLAEKLGGQ- 175 Query: 150 CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENN 209 N+V ++G G + R +G E +K PNIK++ ++G + + G++VM +F+ + Sbjct: 176 GNIVLIEGFPGHPANVARMEGVEEVLKEYPNIKVLGRETGKWDEATGQQVMSNFLAS--- 232 Query: 210 GKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD------GEAN 263 N+ + D M IGA+QA+ A P K + +G + Sbjct: 233 FPNLDGYWTQ-DGMAIGAMQAVMAAN--PSKWPVLVG-EGRCQFLQLWDQRLKEDPNFET 288 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEK----------LTLTKSTLYLPDTAKEELE-- 311 +V P ++ + G +K + + D +E Sbjct: 289 IAVANPPGVSPTGLRIAINMLQ-GKQVDKSKLGGANGLSFVIPVPVIVTKDNFQEVFTTV 347 Query: 312 -KKKNMGY 318 K K Y Sbjct: 348 CKDKPATY 355 >UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C4ZBY5_EUBR3 Length = 338 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 26/333 (7%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEA-----EKRGITLKIAD 60 LI+S VS + + + + +G + + + K E +K I++ I D Sbjct: 8 LILSFVSCSNTRVDEKKQIYIGVTCYDQKDTFIGELIETFKKECASLDTDKYDISMTIMD 67 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q Q V+ + G + + I T ++ A + +IP+ +R +D + Sbjct: 68 AAGSQRAQDDQVQEMIEDGCNVLCINLADRTDLSHIINAAMEKDIPIIFFNREPVDEDLN 127 Query: 121 LY--MTTVTADNILEGKLIGDWLVKEVNGKPC---------NVVELQGTVGASVAIDRKK 169 + + V A G++ G+ + + P V L+G +G AI R + Sbjct: 128 RWDKLYYVGAKAKQSGQMQGELIADYIKNNPGVDKNGDGRIQYVILEGEMGHQDAIVRTE 187 Query: 170 GFAEAIKNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 E++KN I+ + Q ++ R++ + M I N +I +V A+ND M +GAI Sbjct: 188 SVTESMKNNGLQIEKLSCQIANWNRAQAQNRMTQLIGQYKN--SIELVIANNDAMALGAI 245 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGT 288 A ++ G+ +DG D +A+ + A+V A L G Sbjct: 246 DAYEKLGVTESNVPAFFGVDGTDDGLEAVQQSKLAATVYNDKEGQAMAMAQLAYLAATGG 305 Query: 289 -------MPEKLTLTKSTLYLPDTAKEELEKKK 314 +K PD E ++ ++ Sbjct: 306 SMKNIKFEDKKYVYLPYEKVTPDNVNEFVKDEQ 338 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 132/321 (41%), Gaps = 28/321 (8%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGW-RAAETNVAKSEAEKRGI-TLKIADGQQKQENQIK 70 A A P+ VG + G ++ + + + K A GI L + DG Q Sbjct: 21 AGKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANGIAELTVFDGNYDHATQAS 80 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 Q D P+ + + V+ +A +PV + + ++ + +D+ Sbjct: 81 QFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVGSNGPAKSDEL---VSFIGSDD 137 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 + G+ + L K + K N+V L G G R +G +A+ +I ++ ++ + Sbjct: 138 VAAGQYEAETLFKAIGDK-GNIVVLIGPEGNLGQELRTEGNKKALDANKDITVLERKTAN 196 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 ++RS+ +M++++ + I V A ND+M +GAI A+K AG+ P K I IDGV Sbjct: 197 WSRSEAMVLMQNWLTSHKG--KINGVLAQNDEMGLGAIAAMKAAGIDP-KTIPVVGIDGV 253 Query: 251 PDIYKAMMDGEANASVELT-PNMAGPAFD-ALEKYKKDGTMP-----------------E 291 D +A+ G+ S+ A A D AL + D P + Sbjct: 254 TDAVRAVQSGDMILSIRQDAQTQAQGAVDIALRRVIGDSYQPLAECWKKYPQMAWGNGTD 313 Query: 292 KLTLTKSTLYLPDTAKEELEK 312 KL T + A E L+K Sbjct: 314 KLYSVPWTYVTKENAAEFLQK 334 >UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMJ9_9PROT Length = 307 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 16/314 (5%) Query: 1 MWKRLLIVSAVSAAMSSMA----LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GIT 55 M K + + ++ A A + T+ F+Q + +R + + K I Sbjct: 1 MKKIFIFIVSILLASILNAGELDKSKTYTIAFAQDTLNNDYRLKQVKEVEKALLKYPNIR 60 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 +D + Q+K + F++QGVD + +P V+ +A + IPV L+ R + Sbjct: 61 FIYSDAKASASMQVKQIEDFISQGVDLLMTSPYDEDSTRQVISKAYKSNIPVVLVSRRVK 120 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 D + + + +N K +LVK++N K V+ L+G +V R +GF E + Sbjct: 121 GND---FTSYIHPENRQIAKDAAKYLVKKMNYK-GTVLLLKGVAKTNVERMRTEGFFEVV 176 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 PNIK+I + ++ R ++ + A G+ V + +D M++G K+ G Sbjct: 177 NKYPNIKVIER-TANYLRRDAIIEVDKLLSA---GQKFDAVMSQSDSMLVGVRMVFKKYG 232 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 +KP ++T ID + A+ DGE N+S + A + D K G K Sbjct: 233 IKPSS-LVTVGIDYIKPAQDAIRDGEQNSSFVYS-LCAKESADIAIKILS-GESVAKEIK 289 Query: 296 TKSTLYLPDTAKEE 309 + E Sbjct: 290 LDTNQITRKNVDEI 303 >UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZW4_MYCS2 Length = 372 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 132/288 (45%), Gaps = 12/288 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 + P+ + FS G + + +A+ ++ G + + Q +++ +AQG Sbjct: 89 SDPIKITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGT 148 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 DA+ + P G + VLK+A+ A+IP F + + + + + V A EG+ +G+W Sbjct: 149 DALMMMPATTQGLDAVLKQAEAAQIPYFFSQKGMLGVEPA---SQVLAPYSNEGQQLGEW 205 Query: 141 LVKEVNGKP-CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 +V+ G+ V + G G + R F + + N ++ +Q G++ R ++ Sbjct: 206 VVEHYKGQEDVKVAIISGIPGDQSSDARVNSFLLPLLRSCNFNVVANQPGNYRRGDSEKA 265 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 ++ + A +I +++ ND+ +G I A+K +G + + +DG D++ A+ Sbjct: 266 AQNMLAAN---PDIDLLFGANDEAALGGIAALKSSGR---QGVDVVGLDGQTDMFAAIQS 319 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G+A A+V P AG + Y + +PE L L +T + Sbjct: 320 GQALATVIHKPT-AGIVVEEAVDYLRGKPVPEYRVL-DEDLVTKETIE 365 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 129/317 (40%), Gaps = 14/317 (4%) Query: 1 MWKRLLIVSAVSAAMSSM--ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M L+V+A +A++ ++ + A +G + ++ + + A ++G+ + + Sbjct: 1 MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D + Q+ V+ + Q +DA P A + A++A IPV +DR + Sbjct: 61 VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 T + +++ + +++++ G + + G G + +DR G AI Sbjct: 121 GD---TFIAGESVESAYAVCKFIIEKAGG-SGKMAIIHGQKGTTPEVDRFTGCKRAIDEN 176 Query: 179 PNIKIIRSQSGD-FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 +++I Q + ++ +G + ++ ++A +I +++ D + +GA +A+ A L Sbjct: 177 KGVELIDQQWSNMWSADEGFSIAQNMLQAN---PDITIIFGQADGLAMGAAKAVDVANLS 233 Query: 238 PGKDILTGSIDGVPDIYK--AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 ++ G DG + A G A+ + G G E+ Sbjct: 234 --DKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQT 291 Query: 296 TKSTLYLPDTAKEELEK 312 + L D A E ++ Sbjct: 292 PNAVLTTCDNAPEFVKN 308 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 127/317 (40%), Gaps = 12/317 (3%) Query: 5 LLIVSAVSAAMSSMALAA-PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 L + +S A+S+ A AA V + A + EA G+ + + Sbjct: 10 CLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGLKVDVKVTNY 69 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 Q V +AQ D I + PV ++ P +++ A IP+ + + D K + Sbjct: 70 DANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNSMPDQKYSRYWK 129 Query: 124 TTVTADNILEGKLIGDWLV----KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNA 178 ++I G+ ++ ++ G V+ + G +G + R +GF + + KNA Sbjct: 130 VFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQRYQGFVDGLKKNA 189 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P I+++ +Q D+ K + + K++ VY ND + G + A + GL+P Sbjct: 190 PGIEVVGAQPADWDAVKAEAAASALFT---QFKDVKGVYTENDSQLRGVVTAAQRLGLEP 246 Query: 239 GKDILTG-SIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 K ++ G D +A+ G+A A+VE +P G G P + Sbjct: 247 SKLVIVGHGCDA--GGVEAISAGKAYATVEQSPFDDGAYAAKAALELATGKTPRAVQYLP 304 Query: 298 STLYLPDTAKEELEKKK 314 + + T +KK Sbjct: 305 NPIATKATTNVCYSQKK 321 >UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM Length = 383 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 124/305 (40%), Gaps = 21/305 (6%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGI---TLKIADGQQKQENQIKAVRSFVAQGVD 81 VG + ++ ++G + I DG Q Q + +F+ +GVD Sbjct: 79 KVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGVD 138 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK------DKSLYMTTVTADNILEGK 135 + I PV ++ + + A IP+ ++R D + D + +T V D G Sbjct: 139 VLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSGT 198 Query: 136 LIGDW-------LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQ 187 G+ V + V ++G A R + +A+++A + + Q Sbjct: 199 FQGEMISDLGLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGLEVNCLSDQ 258 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 G++ + + ++++ + + G ++ +V+ +ND M +GA+QAI+ AG G DI + Sbjct: 259 VGNWQQDQAQQIVANALGQY--GNDVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLVGV 316 Query: 248 DGVPDIYKAMMDGEANASV-ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 D + + + ++ G +V + + A DA Y G + D A Sbjct: 317 DALSEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYI-TGAGNDHYIGCDYVKVTKDNA 375 Query: 307 KEELE 311 ++ L+ Sbjct: 376 QDVLD 380 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 12/283 (4%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIA 86 G + + + + + E G L D Q QE Q + ++ + +G+ +F+ Sbjct: 37 GATYMTRNNPYFDVLNEGIEEVVEANGDILLTRDPLQDQEKQNEQIQEMIDEGIQMLFLN 96 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN 146 PV +P L ++A + + +D + KD+ ++ + DN G+L ++K + Sbjct: 97 PVDWEKVQPALDACREAGVGIINVDTVV--KDRDSVISIIETDNYQAGQLCALDMMKRKD 154 Query: 147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA 206 +V L + S+ +R++GF + I + N +++ ++ VM ++ Sbjct: 155 --EAKIVILDNPIQTSIT-NREQGFLDTIADNHNYQVVYREAAAGEIEVSSHVMADLLRR 211 Query: 207 ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 + + ++ ND +GA+ A+++A + G +L IDG PD + G + Sbjct: 212 DIS---FDVILGGNDPTALGALAALQQARREEG--VLIYGIDGSPDFKAILDVGYVTGTS 266 Query: 267 ELTPNMAG-PAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 +P G A + +Y DG EK ST+ D E Sbjct: 267 AQSPRSIGRKAAETAYRYL-DGEPVEKYISMPSTMITRDNLHE 308 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 120/319 (37%), Gaps = 19/319 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVG--------FSQVGSESGWRAAETNVAKSEAEKRG 53 + R L++ ++ + AP T G S + + + K ++ G Sbjct: 19 FLRRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHG 78 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 L D Q Q + + Q AIF+ PV L A++A+IPV ++D Sbjct: 79 DRLVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAP 138 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 + D L + V +DN+ G+L L V LQ +V +DR GF + Sbjct: 139 V--PDADLVLAQVASDNVAAGRLAAQALGDA--RPQAKVAILQYSV-NKACVDRVAGFTD 193 Query: 174 AI-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 + K+ P II Q T + VM + ++ V+ ND IG + AI Sbjct: 194 VLAKSFPGATIIARQDVKGTSEATRPVMRDLL---GRFPDLDAVFPINDPGAIGCVSAID 250 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 AG +L ++DG + + +++G +++ P G G +K Sbjct: 251 AAGRSG--KVLVVTVDGSREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHLAGKPVDK 308 Query: 293 LTLTKSTLYLPDTAKEELE 311 TL A E ++ Sbjct: 309 EIKVPVTLVTKANAAEFVK 327 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 126/311 (40%), Gaps = 12/311 (3%) Query: 3 KRLLIVSAVSAAMS--SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + L + + + A+MS S A AA T Q+ ++ + A+ A+ G L I + Sbjct: 10 RLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFN 69 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q A+ +++ QGV I +A + G P +KEA A IPV +D + ++ Sbjct: 70 SNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQA 129 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCN--VVELQGTVGASVAIDRKKGFAEAIKNA 178 V DNI G++IG + V V + + + G + +++ R+KGF E +K+ Sbjct: 130 ---AQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSN 186 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P I I G + K E+ I ++ +YA + ++GAI A++ G + Sbjct: 187 PKITIANVVDGQNVQDKAMTAAENLITGN---PDLTAIYATGEPALLGAIAAVENQGRQ- 242 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 KDI D M G A ++ P G G K L + Sbjct: 243 -KDIKVFGWDLTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPA 301 Query: 299 TLYLPDTAKEE 309 T+ Sbjct: 302 TVVTKANVDSY 312 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 13/301 (4%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A S TVG + + K+ A+K+G+ + D V Sbjct: 137 AASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNVE 196 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 +++ VDA+ I+ VL K A P L+DR Y + + DN Sbjct: 197 DLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFR---SGTYASWIGPDNEAI 253 Query: 134 GKLIGDWLVKEVNGKPCNVVELQ-GTVGASVAIDRKKGFAEAIKNAPNIKIIR-SQSGDF 191 G+ G++L ++ GK V ++ G S+ + R G +A+ A I+++ G++ Sbjct: 254 GRQDGEFLAAKL-GKDATVALIKGGPADNSIGLARTTGVKKALDAA-GIRMVEGPDYGNW 311 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 G VMES + + K++ V+ ND M +GA +A+K+AG + K+I+ +DG Sbjct: 312 ASDGGLTVMESLLASH---KDLDAVFCENDAMCLGAQRAVKDAGRE--KEIVLAGVDGQA 366 Query: 252 DIYKAMMD-GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + +A+ G + + G DG PEK T+ S + A + Sbjct: 367 EALQAIAAGGNYLVTGLNDADQIGSLGLDRAVDILDGKKPEKDTVVDSPQVTKENAAKYQ 426 Query: 311 E 311 + Sbjct: 427 D 427 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 16/293 (5%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQGVDA 82 + + + AA + A +E +K+G+ +++ G + + + + QG + Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS----LYMTTVTADNILEGKLIG 138 + PV AT L +IP+ LD ID Y + + +DN+ G+ G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + L+K + GK V LQG G I+R+KGF E K A + I+ +Q D+ ++KG+ Sbjct: 141 EGLLKLMGGK-GEVAILQGIAGEQNGINRQKGFTE--KVAGKLDIVATQPADYDQAKGQT 197 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 V E+ +KA I ++A ND M +GA QA++ AGL + S+DG+ +A+ Sbjct: 198 VTEAILKAH---PKITGIFAANDTMGLGAAQAVRNAGLTG--KVSIISVDGISAALEAVK 252 Query: 259 DGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 G + ++ P G A A +P + + L + + Sbjct: 253 AGTLSGTISQYPYAEGQLAVQACIDLVAKKKVPSR-IVAPIALIDSTNVDKAI 304 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 116/290 (40%), Gaps = 13/290 (4%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ--QKQENQIKAVRSFVA 77 A G S+ + WR+ A + A K GI Q Q Q+ + ++ Sbjct: 54 AAGTKVGGVSKTLTNEYWRSLGEGYA-NVATKLGIEFVYQAAQSEGDQLGQLAIAENLIS 112 Query: 78 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLI 137 QG +A+ +P P ++ A A +PV ++ ++ + + Y+ V N G + Sbjct: 113 QGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAV-IPSAANYVGNVQKGN---GVNV 168 Query: 138 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGK 197 +W + V ++G G A R GF E I +++ S +++R + Sbjct: 169 ANWFIAN-RPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAF 227 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 + ++ ++ YA+ND M +G ++A+K AG + + DG+ D Y A+ Sbjct: 228 NAASTILQQY---PDLIGFYANNDGMALGVVEAVKAAGKA--EQVAVFGTDGISDAYAAV 282 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G+ +V+ P + G + G ++ T L D + Sbjct: 283 RAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLPRVVATPQALITKDNVE 332 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 138/321 (42%), Gaps = 35/321 (10%) Query: 1 MWK--RLLIVSAVSAAMSSMALA-----------APLTVGFSQVGSESGW----RAAETN 43 M K +L++VS ++ + + +G + + + R + Sbjct: 1 MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60 Query: 44 VAKSEAEKRG--ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 K EK G L I DG+Q Q NQ + + +F+AQG D I V T ++ AK Sbjct: 61 YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120 Query: 102 DAEIPVFLLDRSIDVKDKSLY---MTTVTADNILEGKLIGDWLVK-----EVNGKP-CNV 152 EIPV ++R + ++ ++ T V AD G + G + +++G + Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQGYMIANLENKGDIDGDGSVSY 180 Query: 153 VELQGTVGASVAIDRKKGFAEAIKNAPNIK---IIRSQSGDFTRSKGKEVMESFIKAENN 209 + L G A R + + ++ +K + + ++ +KG+E + + E Sbjct: 181 ITLMGDPANVDAKQRTEYSVKGLEE-KGVKTNALAQPYQANWDTAKGQEFTANAL--EQF 237 Query: 210 GKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV-EL 268 G + +V+A+ND M +GA+ AI+ AG K G+DI +D +PD + + G+ +V Sbjct: 238 GNKLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLKGGKLTGTVLND 297 Query: 269 TPNMAGPAFDALEKYKKDGTM 289 N + A D + + + Sbjct: 298 HFNQSHTAVDVALELLQGKDV 318 >UniRef50_C7IGF5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=C7IGF5_9CLOT Length = 331 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 138/338 (40%), Gaps = 31/338 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP------------------LTVGFSQVGSESGWRAAET 42 M KRL+ V ++S A++ +A V + + A Sbjct: 1 MKKRLISVLSMSLAITFLAACGAGTPKTSDSTASGGSSSKGYKVAYIARAQSDSFAAWLA 60 Query: 43 NVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 N K EA+K I L + DGQ + + + + + D + + P P +++ Sbjct: 61 NAVKDEAKKYPDIKLDVFDGQANDDTENSMIENAITNKYDLVIVQPNNGEAQRPYVEKVV 120 Query: 102 DAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 A I + I + + ++V A+ + + ++++ + VV L G G Sbjct: 121 KAGIHAITTNARISGIEGA---SSVDANPYEQAGVNARAAIEQI-PQNAKVVVLDGPSGN 176 Query: 162 SVAIDRKKGF-AEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 A +R+K + E + P++KI+ Q ++ + + + ME +I++ I V + N Sbjct: 177 FHADERRKSWQKEFFEKRPDVKIVGEQIANWNKDEAMKYMEDWIQSN---DKIDAVISMN 233 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPN-MAGPAFDA 279 D+M GAI+ +K+ K++L +DG + + +G+ ++ + +A ++ Sbjct: 234 DNMAAGAIEVVKDN--PKFKNMLAYGVDGTAEALLLIQEGKMTSTCMQSAYDLATKLLES 291 Query: 280 LEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMG 317 K G + T + L D ++ ++ K G Sbjct: 292 GNKLLTGGEK-QIDTDIGNPLVNKDNVQQYIDILKKSG 328 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 21/320 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAA----------PLTVGFSQVGSESGWR--AAETNVAKSE 48 M K+ L + +S +S+ LA + ++S + ++ Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 I K +Q + ++ V + Q VD I +A ++ A +A+IP+ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 +D + D + + DN D + E+ GK V + G S A+ R+ Sbjct: 121 TVDSGV---DSDKVASFIATDNEKAASQAAD-VCAELIGKSGKVGVVNFVPGVSTAVQRE 176 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 KGF + + I+++++Q +SK + E + A ++ ++A N+ +G Sbjct: 177 KGFRDGMSKHSGIELLKTQYSQSDKSKAMAITEDILTAN---PDVKAIFAANNRSALGVA 233 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGT 288 QA+K G+ + + D PD K + DG A + P G G Sbjct: 234 QALKGKGVAG--KVKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGE 291 Query: 289 MPEKLTLTKSTLYLPDTAKE 308 EK T T+ + + Sbjct: 292 TVEKRIDTGVTIVTKENIND 311 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 11/284 (3%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G + + + + + E+ G TL D + QI+ + F+ VDAIF Sbjct: 45 KIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSLDKQIEEIYDFIDLKVDAIF 104 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 I PV G L +A+ A + ++ D+ D L TV +DN G L + L+ + Sbjct: 105 INPVDWVGIRNALIDAQKAG--IIIIAIDTDIYDDDLTACTVVSDNYKAGVLCAEDLMNK 162 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFI 204 N N++ L+ A AIDR GF +AI+N N K++ D V+E+ + Sbjct: 163 RN--SANIILLEH-KSAKSAIDRINGFEDAIRNNKNFKVVARSDCDGQLETAMPVVENIL 219 Query: 205 KAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANA 264 + K++ + A ND +G I A++E +K I IDG PD K + + + +A Sbjct: 220 LKQ---KDVDTIMALNDPSALGGIMALEEKNIKG---INVYGIDGSPDGKKMVKEDKMSA 273 Query: 265 SVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 +V +P G G +K + L + E Sbjct: 274 TVSQSPRKIGRISGESLYNIFQGKEVDKKIVVPVELITKENIDE 317 >UniRef50_Q1M6L8 Putative substrate-binding component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6L8_RHIL3 Length = 340 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 17/317 (5%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 R ++ + + A+A LT G+ E + + A+++G+ + D + Sbjct: 26 RSSALTLTALLFAGSAMAKDLTFGYVPASLEYPYNVMTAKGFEEAAKEKGVKTVVIDPRG 85 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV------- 116 E Q ++ ++Q VDAI P+ + E + + DA++P+ + + Sbjct: 86 SVEKQGNSLDDLLSQKVDAIGFLPLDSVVAEGFVDKVSDAKVPIVAIALQVGDSAKRQLK 145 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEV-NGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 V DN G + G+ + K + + G ++ GF A+ Sbjct: 146 DPYPGLSALVATDNYQSGVVAGEMAAGVLPKDKTAKIGIVMGDPAYTIVKLDTDGFKAAL 205 Query: 176 KNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 A I+ Q ++T +G+ V ++F+ A +I ++Y+H DDM IG +AI + Sbjct: 206 DKAGAKYTIVAEQPTNWTPDEGEAVCQNFLTAH---PDIDLIYSHADDMAIGCARAIDAS 262 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 KP K I TG G + A++ GE SV P + G + + T PE Sbjct: 263 ASKP-KLIATGG--GSKLGHDAILAGEMYGSVCTRPQLLGKLM--FDALYEAATKPETPK 317 Query: 295 LTKSTLYLPDTAKEELE 311 T +P KE ++ Sbjct: 318 GRFVTYDMPPITKETID 334 >UniRef50_A6M0Q8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0Q8_CLOB8 Length = 487 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 118/290 (40%), Gaps = 10/290 (3%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGV 80 +G + G + W + + A+ EAE+ + + + D Q + + SFV Q V Sbjct: 176 KKYRIGVAIHGFDQPWNVSLADAAQWEAERHPNVEVDVKDAQWDNDRMADIIDSFVLQKV 235 Query: 81 DAIFIAP-VVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 D I P V + +K A +A IPV +DR +++ + +T N + + Sbjct: 236 DGILTWPMVESETTIAPVKRAIEAGIPVVSVDRMTGLEETTSRVTGNFPANGAQCGMYLI 295 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 W + + NVV L+ G++ +R F + + P+I I++S D ++ Sbjct: 296 WKLAKEGSLNANVVLLRKPSGSTADANRTGHFLKVLSYFPDIHILKSYHDDDNTAEALAN 355 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG----LKPGKDILTGSIDGVPDIYK 255 M+ + N +I +V+ D I A A K A K K ++ SID Sbjct: 356 MQLAL---NEYPSIDVVFGTGDHEAIAAYDASKNANRLNSRKDDKKMMFLSIDDSKKAIT 412 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYK-KDGTMPEKLTLTKSTLYLPD 304 ++ DG + TP ++ L K+G+MP + + D Sbjct: 413 SVKDGLFEVNTPYTPLISDIGMRTLLNIITKNGSMPHDIITPNIPMVTKD 462 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 140/316 (44%), Gaps = 31/316 (9%) Query: 1 MWKRLLIVSAVS---AAMSSMALAAPL-----TVGFSQVGSESGWRAAETNVAKSEAEKR 52 +W RLL+ ++V+ A +S A AA VG S + + A++ A + Sbjct: 3 LWPRLLMAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARL 62 Query: 53 GITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 G+ L+ G + Q+ AV S +A G I I P + PVL++A+ I V L Sbjct: 63 GLELRSFAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIAL 122 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN--GKPCNVVELQGTVGA-SVAIDR 167 D +D + T DN+L GKL+G+W K + K V L V SV +DR Sbjct: 123 DTPLDPPGAAD--ATFATDNVLAGKLVGEWAAKTLGANAKSAKVALLDLNVNQISVDVDR 180 Query: 168 KKGFAE----------AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVY 217 +GF + I + + +I+ G+ ME+ ++ + + +VY Sbjct: 181 DQGFLKGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPY---VSVVY 237 Query: 218 AHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPA 276 A N+ GA +A++ G KD+L ++DG + + DG A+ P MA Sbjct: 238 AINEPAAAGAYEALRSIGRD--KDVLVVAVDGGCPGVRNVKDGVIAATAMQFPLAMAQMG 295 Query: 277 FDALEKYKKDGTMPEK 292 +A+ KY DGT P+ Sbjct: 296 VEAVLKYATDGTKPKP 311 >UniRef50_A1WMZ2 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Bacteria RepID=A1WMZ2_VEREI Length = 330 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 129/298 (43%), Gaps = 21/298 (7%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKR-----GITLKIADGQQKQENQIKAVRSFV- 76 LT+G S + ++ A A + G+ + I E Q ++ + Sbjct: 38 KLTLGVSIPSATHSFQGAIVFWANKAKKDLEQAHPGLQVVIKTASGGPE-QANQLQDMLT 96 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 A + A+ I P + + + K + V ++DR + D S ++ DN GK+ Sbjct: 97 ANKIGALVIFPFESAALTKPVAQVKAKGVYVLVVDRGL--TDPSAQDAYLSYDNTAFGKI 154 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 +++ K + GK VV L+G ++ +R GF +KN P IK++ ++ ++ R Sbjct: 155 PAEFMAKTLGGK-GQVVALRGIA-TTLDNERMDGFNAVLKNNPEIKLLDAKYANWNRDDA 212 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 +VM+ ++ + I V+A +DDM +G ++AI++A K K + G G + KA Sbjct: 213 FKVMQDYLTRFAH---IDAVWAADDDMAVGVLKAIEQAKRKDIKLVFGGG--GSKGMIKA 267 Query: 257 MMDGE---ANASVELTPNMAGPAFD-ALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 +MDG A+V +P A E K +P + L + AK+ Sbjct: 268 LMDGSNPVIQANVSFSPKFIYEAIKLTAEARLKGDKLPARTIL-PVVQITKENAKDFY 324 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 328 2e-88 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 298 2e-79 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 291 3e-77 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 291 3e-77 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 289 7e-77 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 289 1e-76 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 286 8e-76 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 283 4e-75 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 283 8e-75 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 280 5e-74 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 279 9e-74 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 279 1e-73 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 278 1e-73 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 278 2e-73 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 277 4e-73 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 276 7e-73 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 276 7e-73 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 275 1e-72 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 275 2e-72 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 273 6e-72 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 271 2e-71 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 270 5e-71 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 270 5e-71 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 269 9e-71 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 268 1e-70 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 268 2e-70 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 267 3e-70 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 266 5e-70 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 265 1e-69 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 265 1e-69 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 265 2e-69 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 263 6e-69 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 263 7e-69 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 263 8e-69 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 263 8e-69 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 263 8e-69 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 262 1e-68 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 262 1e-68 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 262 1e-68 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 261 3e-68 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 261 3e-68 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 260 6e-68 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 260 6e-68 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 260 6e-68 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 259 1e-67 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 258 3e-67 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 257 3e-67 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 257 4e-67 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 257 4e-67 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 256 6e-67 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 255 1e-66 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 255 2e-66 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 255 2e-66 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 255 2e-66 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 254 2e-66 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 254 2e-66 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 254 4e-66 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 253 4e-66 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 253 7e-66 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 253 8e-66 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 252 9e-66 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 251 2e-65 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 251 2e-65 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 251 3e-65 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 251 3e-65 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 251 3e-65 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 250 7e-65 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 248 1e-64 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 248 2e-64 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 248 2e-64 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 248 2e-64 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 248 2e-64 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 248 2e-64 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 247 3e-64 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 247 4e-64 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 247 4e-64 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 247 4e-64 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 247 4e-64 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 247 4e-64 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 247 4e-64 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 247 5e-64 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 246 6e-64 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 246 7e-64 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 245 1e-63 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 245 1e-63 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 245 1e-63 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 245 2e-63 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 245 2e-63 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 244 3e-63 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 244 3e-63 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 244 3e-63 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 244 4e-63 UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostri... 243 7e-63 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 243 8e-63 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 242 1e-62 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 242 1e-62 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 242 1e-62 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 242 1e-62 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 242 2e-62 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 241 2e-62 UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostri... 240 4e-62 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 240 4e-62 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 240 5e-62 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 240 5e-62 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 239 7e-62 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 239 9e-62 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 239 1e-61 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 239 1e-61 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 239 1e-61 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 238 2e-61 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 238 2e-61 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 238 2e-61 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 238 2e-61 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 238 2e-61 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 238 3e-61 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 238 3e-61 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 237 3e-61 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 237 5e-61 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 237 5e-61 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 236 6e-61 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 236 6e-61 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 236 8e-61 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 236 9e-61 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 236 9e-61 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 235 1e-60 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 235 1e-60 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 235 1e-60 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 235 1e-60 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 235 1e-60 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 235 2e-60 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 235 2e-60 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 234 2e-60 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 234 2e-60 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 234 2e-60 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 234 3e-60 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 234 4e-60 UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coproco... 234 4e-60 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 233 4e-60 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 233 5e-60 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 233 6e-60 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 233 8e-60 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 232 1e-59 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 232 1e-59 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 232 1e-59 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 232 2e-59 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 232 2e-59 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 231 2e-59 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 231 2e-59 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 231 2e-59 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 231 3e-59 UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali... 231 4e-59 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 230 4e-59 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 230 4e-59 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 230 5e-59 UniRef50_C0CVX1 Putative uncharacterized protein n=1 Tax=Clostri... 230 5e-59 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 230 5e-59 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 230 5e-59 UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette... 230 6e-59 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 230 6e-59 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 230 6e-59 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 229 7e-59 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 229 7e-59 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 229 8e-59 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 229 8e-59 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 229 1e-58 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 229 1e-58 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 229 1e-58 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 228 1e-58 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 228 2e-58 UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ... 228 2e-58 UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri... 228 2e-58 UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 228 3e-58 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 227 4e-58 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 227 5e-58 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 227 5e-58 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 226 7e-58 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 226 9e-58 UniRef50_C2HAH9 ABC superfamily ATP binding cassette transporter... 226 1e-57 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 226 1e-57 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 226 1e-57 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 226 1e-57 UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin... 225 1e-57 UniRef50_C7GGA9 ABC transporter periplasmic-binding protein YtfQ... 225 1e-57 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 225 2e-57 UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_... 225 2e-57 UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding... 225 2e-57 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 225 2e-57 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 224 3e-57 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 224 3e-57 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 224 3e-57 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 224 3e-57 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 224 3e-57 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 224 3e-57 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 224 4e-57 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 224 4e-57 UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 T... 223 5e-57 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 223 5e-57 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 223 1e-56 UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ... 223 1e-56 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 222 1e-56 UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 221 2e-56 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 221 2e-56 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 221 2e-56 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 221 2e-56 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 221 3e-56 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 220 6e-56 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 220 6e-56 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 219 7e-56 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 219 7e-56 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 219 8e-56 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 219 1e-55 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 219 1e-55 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 219 1e-55 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 219 1e-55 UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostri... 218 2e-55 UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 218 2e-55 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 218 2e-55 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 218 2e-55 UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=... 217 3e-55 UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional... 217 4e-55 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 217 4e-55 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 217 4e-55 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 217 4e-55 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 217 4e-55 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 217 5e-55 UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasm... 216 6e-55 UniRef50_Q0RYT8 ABC sugar transporter, periplasmic substrate bin... 216 6e-55 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 216 7e-55 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 216 8e-55 UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 215 1e-54 UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter... 215 1e-54 UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=... 215 1e-54 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 215 2e-54 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 215 2e-54 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 214 3e-54 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 214 3e-54 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 214 3e-54 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 214 4e-54 UniRef50_C7IGF5 ABC-type sugar transport system periplasmic comp... 213 5e-54 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 213 6e-54 Sequences not found previously or not previously below threshold: >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD Sbjct: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS Sbjct: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN Sbjct: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK Sbjct: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL Sbjct: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 Query: 301 YLPDTAKEELEKKKNMGY 318 YLPDTAKEELEKKKNMGY Sbjct: 301 YLPDTAKEELEKKKNMGY 318 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRS 74 S + +G S + + + + A K + I D Q Q V Sbjct: 41 ASETKTDGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVED 100 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + QGVD I I PV +T +++A +A IPV +DR D+ ++ + ++N+ G Sbjct: 101 LITQGVDLIVINPVDSTAIATSVEKANEANIPVICVDR---GSDQGELVSFIASNNVEGG 157 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 KL G++++++V G+ V++L+G GAS +R +GF EA I ++ SQ+ +F R+ Sbjct: 158 KLAGEYILEKV-GENAEVIQLEGIPGASSTRERGEGFEEA--TNGKINLLASQTANFDRA 214 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 +G VME+ ++A ++ V+ ND+M +GA +AIK +G KD+ DG D Sbjct: 215 EGMTVMENLLQAH---PDVKAVFCQNDEMALGASEAIKASG----KDVTIVGFDGNEDAI 267 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 KA+ +G +A+V P G G E+ + L Sbjct: 268 KAVEEGNLSATVAQKPKEMGKLAIETAIKYLKGEEVEETVDSPLELI 314 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 140/291 (48%), Gaps = 10/291 (3%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAV 72 + + A P+ +GF+ + + A +N + EA+K G+ + I +G Q+ V Sbjct: 34 LSNTGTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQV 93 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + Q V+AI + P + +++A A IPV LDRS+ K + ++++ Sbjct: 94 EDLIQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVT---KGNVACFIASNSVE 150 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 GK+ D L+K + GK VVELQG +G S DR+KGF E I AP I+++ Q+ +F Sbjct: 151 AGKMAADELIKALGGK-GQVVELQGVIGTSAEADREKGFDEEIGKAPGIRVVARQTANFD 209 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 RS+ VM++ ++A NI V+A ND+M +GA++AI+EAG +I IDG + Sbjct: 210 RSQALNVMQNILQAH---PNIQGVFAQNDEMALGALKAIQEAGKH---NIKIVGIDGEKE 263 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 + G A + P G +G K + L Sbjct: 264 AVNDVHKGLLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQVNSPLHLVEK 314 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 153/315 (48%), Gaps = 17/315 (5%) Query: 5 LLIVSAVSAAM--------SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 L + + A+ S L VG + + ++ + + EA+K GI L Sbjct: 12 TLSIFLLLASCNQSGTSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIEL 71 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 D ++ Q++ V SF+AQ VDAI + P P + +A A+IP+ ++ Sbjct: 72 ITVDAERSALKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSS 131 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 K V +D++ ++ ++ ++ GK NVV + G +G + I R++G E +K Sbjct: 132 KPS----AFVGSDDVESARIAMKFIADKLGGK-GNVVMMHGYMGQAAQIKREQGAREILK 186 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 PN+K++ Q+G++ R+K +ME++I++ G I V+AHND+M +GA++A+ +AGL Sbjct: 187 QYPNLKLLAHQTGEWDRAKAMSLMENWIQSY--GSQINAVFAHNDEMGLGAVKALTDAGL 244 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 K ++ SID +PD +A+ G +A+V G A G +K TL Sbjct: 245 K--DKVIVVSIDAIPDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQPFDKETLV 302 Query: 297 KSTLYLPDTAKEELE 311 L D + L+ Sbjct: 303 PFQLVTKDNLSKFLK 317 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 9/302 (2%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQKQENQIKAV 72 A +S + + +G + + W + + K + ++ + + D Q+ V Sbjct: 47 AQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQV 106 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 +F+ Q VDAI + PV ++ +A A IP+ +++R D DK+ V +++I Sbjct: 107 ENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKA--TAYVGSESIK 164 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 G + + + K +NGK + + G +G I R +G + IK P++K++ + ++ Sbjct: 165 AGIMQMEEVAKLLNGK-GKIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLEGTAEWD 223 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R+KG +ME+++++ GK I V +ND+M IGAI A+++ G D++ +D PD Sbjct: 224 RAKGMSLMENWLQS---GKKIDAVVCNNDEMAIGAIMALEDEGK--LDDVIVAGVDATPD 278 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + + +G+ +V G + G EK L D +E ++K Sbjct: 279 ALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTKDNVEEYIKK 338 Query: 313 KK 314 + Sbjct: 339 WQ 340 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 147/316 (46%), Gaps = 26/316 (8%) Query: 1 MWKRLLIVSAVSAAMSSM-------------ALAAPLTVGFSQVGSESGWRAAETNVAKS 47 M K L + +A++ S + +G S ++ + + N Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA+K+GI + + D Q Q V + QGVDA+ I P ++ ++ A IPV Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 LDRS + T V +DN+ G++ D++V+++ GK V EL+G GAS +R Sbjct: 121 VTLDRSAEN---GKVETLVASDNVKGGQMAADFIVEQL-GKGAKVAELEGVPGASATRER 176 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF + + + +I Q+ DF R+KG VME+ ++ +I V+AHND+M +GA Sbjct: 177 GSGFHKTADD--KLNVIAKQTADFDRTKGLNVMENLLQGN---PDIQAVFAHNDEMALGA 231 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDG 287 I+AI+ +G K+IL DG D KA+ G+ +A++ P + G + +G Sbjct: 232 IEAIRSSG----KEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNG 287 Query: 288 TMPEKLTLTKSTLYLP 303 EK L Sbjct: 288 KKVEKTIPAPLKLETK 303 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 27/317 (8%) Query: 1 MWK------RLLIVSAVSAAM--------SSMALAAPLTVGFSQVGSESGWRAAETNVAK 46 M K L + + ++ S+ T+G S + + + + Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 47 SEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 EA+KRG+ + I D Q Q V + QGVDA+ I P ++ ++ A +P Sbjct: 61 KEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVP 120 Query: 107 VFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAID 166 V +DRS + + T V +DN+ G++ ++ ++ GK V EL+G GAS + Sbjct: 121 VVTIDRSAE---QGKVETLVASDNVKGGEMAAAFIADKL-GKGAKVAELEGVPGASATRE 176 Query: 167 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIG 226 R GF ++++ QS DF R+KG VME+ ++ +I V+AHND+M +G Sbjct: 177 RGSGFHNIADQ--KLQVVTKQSADFDRTKGLTVMENLLQGH---PDIQAVFAHNDEMALG 231 Query: 227 AIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKD 286 A++AI +G KDIL DG D ++ D + +A+V P + G Sbjct: 232 ALEAINSSG----KDILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDILH 287 Query: 287 GTMPEKLTLTKSTLYLP 303 G +K L Sbjct: 288 GKKVQKTISAPLKLETQ 304 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 9/299 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A S +G + + + + + A++ GI L I D Q Q+K V Sbjct: 56 AGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVE 115 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + + + DAI I + ++ +A IPVF +DR + + ++ + D I Sbjct: 116 NLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGE---VISHIGYDAIKS 172 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 G++ G +LV + GK +VE+QG +G +VA +R +GF E +K+ P+++I+ Q DF R Sbjct: 173 GRMAGQYLVDTLGGK-GKIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADFDR 231 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 +KG VME+ ++A I +YA ND+M++GA++A++ AG +I+ D + D Sbjct: 232 AKGMSVMENILQAN---PEIDGLYAANDEMLLGALEAMEAAGRT--DEIVKIGCDAIDDT 286 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 AM G+ +A++ P G A +G E + + L DT + K Sbjct: 287 LDAMKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQDTVDSLVTK 345 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 161/295 (54%), Positives = 207/295 (70%), Gaps = 5/295 (1%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 P+ +GFSQVG+ES WR A T KS A GI LK +D QQKQENQIKA+RSF+AQ VD Sbjct: 30 KPIVLGFSQVGAESEWRTANTESIKSAARDAGIELKFSDAQQKQENQIKAIRSFIAQRVD 89 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I +PVV +GWEPVL+EAK A+IPV L DR+++ KD SLY+T + +D + EG+ G WL Sbjct: 90 VIAFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTKDTSLYVTFMGSDFVEEGRKAGRWL 149 Query: 142 VKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 V+++ N+VELQGTVG++ AIDRKKGF E +K P KIIRSQ+GDFTR+KGKEV Sbjct: 150 VEKMKDAKGDVNIVELQGTVGSAPAIDRKKGFEEVVKADPKFKIIRSQTGDFTRAKGKEV 209 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 ME+F+KA G+ I ++YAHNDDM IGAIQAI+EAGLKPGKDI SID V ++AMM Sbjct: 210 MEAFLKA--EGRKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMA 267 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 G+ N +VE +P + A K K G K +T+ ++ +TA +E K+K Sbjct: 268 GKLNVTVECSPLLGPQLM-AAVKDIKAGKTVPKRIVTEEGIFPMETAAQEFPKRK 321 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 90/314 (28%), Positives = 150/314 (47%), Gaps = 23/314 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALA-------------APLTVGFSQVGSESGWRAAETNVAKS 47 + K L+ + V A + +G + + + A+ Sbjct: 4 LMKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKGAEE 63 Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 EA+K+G+TL D Q QI ++ + + V I + P + +K A A IPV Sbjct: 64 EAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAGIPV 123 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 LDRS++ + + V +DN+ GK+ ++L++++ G +VVEL+G GAS A +R Sbjct: 124 VTLDRSVNGGE---VASHVASDNVAGGKMAAEYLLEKI-GNQGDVVELEGIPGASAARER 179 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 +GF + I A ++K++ Q DF R+KG VME+ ++A KN+ V+AHND+M +GA Sbjct: 180 GQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQAN---KNVKGVFAHNDEMALGA 236 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDG 287 +QA++ AG+ KD+ D D A+ G+ +A+V P + G K DG Sbjct: 237 VQALEAAGM---KDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAAKKIIDG 293 Query: 288 TMPEKLTLTKSTLY 301 +K L Sbjct: 294 QPVDKSLPVPLDLV 307 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 142/308 (46%), Gaps = 5/308 (1%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 + AV +SS AA +G + + + + + A K + L+ D Q Sbjct: 6 LFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQGDVV 65 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 QI V+ F++Q VDA+ + PV + + + A +A++P+ ++R D + +TTV Sbjct: 66 RQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPKGVTTV 125 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 +++I G+L +L +++ GK + + G + + DR +G + +K+ P I I+ Sbjct: 126 ASNDIEAGQLQMRYLAEKMGGK-GTIALIMGDLAQNSTHDRSEGVKQVLKDYPGITIVEQ 184 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q+ ++ R+KG ++ +++ A G+ + A+ND+M IGA A+++AG G+ + Sbjct: 185 QTAEWQRNKGMDLTSNWLLA---GRTFDAIVANNDEMAIGAAMALQQAGKAKGE-VAIVG 240 Query: 247 IDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 IDG+PD A+ G ASV P G + L P+ Sbjct: 241 IDGLPDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGEPVDAEVWVPFQLITPEQV 300 Query: 307 KEELEKKK 314 + K Sbjct: 301 AVFEQHYK 308 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 154/311 (49%), Gaps = 13/311 (4%) Query: 5 LLIVSAVSAAMSSMALA-APLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLKIADG 61 L + A M LA + +GFSQ WR A K A + + L + DG Sbjct: 13 LAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDG 72 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 Q+ V S +AQG+ + I+P+ PV+KEA DA I V LDR ++ Sbjct: 73 NNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP---- 128 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNI 181 V +N+ G G++L K++NGK N++ELQGT GAS IDR KGFAEAI P++ Sbjct: 129 VTVHVGGENLPLGVGAGEFLAKKLNGK-GNIIELQGTAGASATIDRNKGFAEAIAKHPDM 187 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD 241 K++ SQ+ D+TR K + ME ++ G I VYAHND+M +GAIQ ++ AG + Sbjct: 188 KVVASQNCDYTRDKAVKFMEDMVQRFGPG-QIQAVYAHNDEMALGAIQVLEAAGR--LNE 244 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 + IDG ++A+ G+ A+ P +A + K K +PE + Sbjct: 245 VAVVGIDGQETAFEAVKQGKLAATFV-YPFVAPEGIETAYKVAKGEEVPE-TITLPTVSV 302 Query: 302 LPDTAKEELEK 312 PD + + K Sbjct: 303 TPDNIADMIGK 313 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 8/314 (2%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG 61 K+L + SA + AA L +G S + + A N ++ A+ + + ++I DG Sbjct: 1 MKKLALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIEDG 60 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR-SIDVKDKS 120 + + Q+ +++F+A GVDAI + PV + +A+ A IP+ ++R I+V Sbjct: 61 KNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLP 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI--KNA 178 V ++ + G L + + + + GK NVV + G + AI R K + I K Sbjct: 121 DNQAFVASNEEVSGTLQTEEVCRLLGGK-GNVVVMMGELSNQAAIQRTKDIHDVIKRKEC 179 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 +K++ Q+ +++R KG ++M +++ A G V ++ND+M IGAIQA+K +G K Sbjct: 180 SGMKVVAEQTAEWSRLKGNDLMTNWLSA---GLEFDAVISNNDEMAIGAIQALKASGRK- 235 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 ++ ID PD AM G+ + +V + G G ++ Sbjct: 236 MDSVVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPF 295 Query: 299 TLYLPDTAKEELEK 312 L P + L K Sbjct: 296 ELVTPANLDKYLSK 309 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 110/290 (37%), Positives = 166/290 (57%), Gaps = 4/290 (1%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + +G+SQ+ + +R AETN K EAEKRG L + D Q Q+ V +AQ +D Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + ++P G E L+ AK+ +PV L+DR + Y+T + D + EG+ G+WL Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVTYIATDFVWEGQAAGEWL 206 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + G CN++EL GTVG+S A DR GFA + +KII SQ+G+F RS+G++VME Sbjct: 207 KDKTGG-TCNIIELTGTVGSSSAQDRATGFAGVVDQNEGMKIIASQTGNFERSEGQKVME 265 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + ++A G + V+ HND M +GA+QAIK AG KP +DIL IDG D +K+++ GE Sbjct: 266 NLLQAH--GGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGE 323 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 +A+V +P FD +EK +PE+ + + A+E +E Sbjct: 324 MSATVVSSPMYGPITFDTVEKILAGQEVPEQTI-MEGVVVDAGNAQENME 372 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 21/319 (6%) Query: 5 LLIVSAVSAAMSSMALA--------APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 LLI SA+ S + +TVG S + + K + + G L Sbjct: 15 LLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGMEKGVKDKTSEIGCKL 74 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + Q+ + + + VD + + + A P +K+AK+A IP+ LDR + Sbjct: 75 IETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAKEANIPIIFLDRGANS 134 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGK---PCNVVELQGTVGASVAIDRKKGFAE 173 +D T + DN+ G+ + ++K + K NVVE++G G S A DR KGF Sbjct: 135 EDM---TTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEGLQGTSAARDRGKGFHN 191 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 + +KI+ Q+GDF + K VM++ ++A I V+ HNDD +GA +AI Sbjct: 192 VMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQAN---PKIDAVFGHNDDCTVGAEKAIIA 248 Query: 234 AGLKPG----KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 + + I IDG+ +++ G + S+ P G + G Sbjct: 249 SNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQDPIGMGVQAVEVGLKAIKGEQ 308 Query: 290 PEKLTLTKSTLYLPDTAKE 308 EK TK D A + Sbjct: 309 VEKHIYTKFFPITKDNATD 327 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 L VG S + + + N + A+K ++++D Q Q + + + VD Sbjct: 46 KDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVD 105 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 + I PV ++ P +K+A DA IPV +DR D +T V +++ G++ ++ Sbjct: 106 VLIINPVDSSAITPAVKDANDAGIPVITVDR---SSDGGKVLTLVASNSTKGGQMAAKYM 162 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 ++++ GK + ELQG GAS +R KGF A K + I+ Q+ F R+KG V E Sbjct: 163 IEKL-GKDAKIAELQGIPGASATRERGKGFDGAAK--GKLDIVSKQTAGFDRAKGLTVTE 219 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + ++ +I +++ ND+M +GA+QA+K AG K I DG D KA+ G+ Sbjct: 220 NILQGNG---DIVGIFSQNDEMALGAVQAVKAAG----KKITIVGFDGEADGIKAVKAGD 272 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 A+V P G +G +K + +L + A + Sbjct: 273 MAATVAQKPEEMGRLALQAAYDHFNGKTVKKNVESPLSLVTTEDANK 319 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 185/320 (57%), Gaps = 12/320 (3%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLT------VGFSQVGSESGWRAAETNVAKSEAEKRG- 53 M K L+ + V+ A+S+ +L+ + VGFSQ + WR AETN K EA K Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 54 -ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 I D Q + Q + +A+ VD IF+AP G P L+ A+ A+IP+FL+DR Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + +++ + +D I +G+ +G+WL K +GK ++VEL GT G+SVAIDR KGF Sbjct: 121 EAAGRPGEHFVSFLGSDFIAQGRRVGEWLAKATDGK-ASIVELTGTAGSSVAIDRAKGFR 179 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 AI PN+KII +Q+ DF+R+ VME+ I+A G +I VYAHND+M +GAIQA+K Sbjct: 180 NAIATYPNMKIIATQTADFSRAAAVRVMENIIQA--KGSDITAVYAHNDEMALGAIQALK 237 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 AG+KPGKD++ GSIDG +A++ GE SVE P F +E+Y +P + Sbjct: 238 SAGMKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNPRFGPLVFATMEEYFAGKKIPPR 297 Query: 293 LTLTKSTLYLPDTAKEELEK 312 + L L+ AK+ + + Sbjct: 298 IILKD-RLFDVTNAKDFVNE 316 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 11/300 (3%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 +L+V + A +G + + + A+ ++++ G L + D Q Sbjct: 15 ILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQND 74 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 + + + G+ + + P + ++ A A IPV +DR + + ++ Sbjct: 75 PAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGE---VVS 131 Query: 125 TVTADNILEGKLIGDWLVKEVNGKP-CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 + +DNI G+L +++ E+ K VVELQG GAS +R KGF I N+K+ Sbjct: 132 HIASDNIKGGELASSFIIDELKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKL 191 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 I SQ+ +F R++G VME+ I+A++ + V+AHND+M +GA +A+K A K I+ Sbjct: 192 ISSQAANFDRAQGLSVMENIIQAQS---DFDAVFAHNDEMALGAAKALKTAN----KKII 244 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG D A+ E +A+V P + G +G K K L Sbjct: 245 VVGFDGDEDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQNISKNIPVKLRLITK 304 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 10/317 (3%) Query: 1 MW-KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKI 58 M K+L++ S + + + LA + +G S + + +S+ ++ G ++ + Sbjct: 1 MKLKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQF 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D + QI+ + +FV+QGVDAI + PV G +P++K A+ A+IP+ ++R +V Sbjct: 61 EDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTL 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + M V +D+ L GKL + L K +NGK NV+ L G + DR +G E Sbjct: 121 PAG-MAYVGSDSKLAGKLQMEELAKLMNGK-GNVMILMGELSNEATRDRTRGVEEVAAKY 178 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P IKI+ Q+ + R + ++ + G+ I + ++ND+M IGAI A+K+A Sbjct: 179 PGIKILDKQTAKWGRKEAVDITTDW---ALTGQQIDAIASNNDEMAIGAILALKQAKKSG 235 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 +L +DG PD + + G+ SV G G E L Sbjct: 236 ---VLVAGVDGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPY 292 Query: 299 TLYLPDTAKEELEKKKN 315 L +E +K + Sbjct: 293 QLITKANYQEFADKNRK 309 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 144/293 (49%), Gaps = 9/293 (3%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 + L +G + + ++ + ++ +++A++ G+ L D ++ Q++ V SF+ Q Sbjct: 27 SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQ 86 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 GVDAI + P P +K A DA+IP+ ++ K V +D+ ++ Sbjct: 87 GVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSETSAKP----TAFVGSDDTESARIAM 142 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 ++ +++ GK N++ + G +G + I R G + +K P +K++ QSG++ R+KG Sbjct: 143 KYIAEKLGGK-GNILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWDRAKGMS 201 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 + E++I++ G I ++A ND+M +GA++A++ AGLK +L S+D +PD +A+ Sbjct: 202 LTENWIQSY--GDKINAIFAQNDEMGMGAVKALEAAGLKG--KVLVVSVDAIPDALQAVK 257 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 G +A+V G EK L L + L+ Sbjct: 258 KGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEVLIPFQLVDKGNVEGFLK 310 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 271 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 135/305 (44%), Gaps = 10/305 (3%) Query: 3 KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLKIAD 60 + ++ A ++ A L +G S ++ + A + A + G+TL++ D Sbjct: 12 RTRAVLFATVLCLAGSTALADLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVED 70 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q+ V SF+AQ VDAI + P + + A A IP+ L+ +V++ Sbjct: 71 SGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFP 130 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 + V D G++ ++L +++ GK ++ L G + R G + + P Sbjct: 131 AGVVFVGTDERRLGQMQMEYLAEKMGGK-GDLAILLGRLAHDDTRKRTAGVKDVLARYPQ 189 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 I+++ QSGD+ R KG ++ +++ + G+ V A+ND+M IGA A+++AG + Sbjct: 190 IRVVEEQSGDWQRDKGLDLTNNWLSS---GREFDAVVANNDEMGIGAAMALRQAGR---R 243 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 ++ G IDG PD A+ G+ ++ P G + + + L Sbjct: 244 EVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWIPVHL 303 Query: 301 YLPDT 305 PD Sbjct: 304 ITPDN 308 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 12/286 (4%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 L +G S + + + + N KS A+++ L ++D Q Q+ V++F++Q VDA Sbjct: 48 ELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDA 107 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I PV + P +K A +A IPV +DR + +TTV +DN+ GK+ V Sbjct: 108 ILINPVDSDAIVPAIKAANNAHIPVIAMDR---GSNGGTVLTTVASDNVAAGKMAAQA-V 163 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 +++ GK V+EL GT GAS IDR KGF + I+ SQS +F R+ G ++ Sbjct: 164 EKLVGKNVKVLELSGTPGASATIDRGKGFNSE-AKTLGLNILSSQSANFDRTTGLNTTQN 222 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 +++ K++ ++A ND+M +GA +A++ G + I IDG + + A+ G Sbjct: 223 MLQSH---KDVQAIFAQNDEMALGAAKAVQATG----QKIAIFGIDGESETHDAIKAGTM 275 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 A++ P G G + + L D + Sbjct: 276 TATIAQQPAKIGEMALQATYDYYQGKKIAHMINSPIYLVDKDNVDQ 321 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 9/296 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADGQQKQENQIKAVRSF 75 + VG S + + + K AEK G I L+ D ++ Q+ V +F Sbjct: 32 GGQGGKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENF 91 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 V QG D I + PV + +P+ A + ++R+ Y V ++ G Sbjct: 92 VTQGKDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLPDGAY--YVGSEEKKAGI 149 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + ++L +++ GK N+V L G + I R +G E K P+IKI+ Q+G + R+ Sbjct: 150 MQMEYLAEKMGGK-GNIVILMGKLDNEGTIKRTEGVEEIAKKYPDIKILDKQTGLWQRTD 208 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G E+++ G I + ++NDDM +GA+QA+K++G I +D PD Sbjct: 209 GMAKTENWLNKY--GNEINAIVSNNDDMALGAVQALKDSGKTG---IFVIGVDATPDGLA 263 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 A+ G+ +A+V + G + K +G K T L P+ E + Sbjct: 264 ALAAGDISATVFQDADGQGGGAVEVAKKAANGETVVKETWVPFKLVTPENINEFKK 319 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 147/304 (48%), Gaps = 13/304 (4%) Query: 1 MWKR-LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K LI +A+ + S+ A T+ + + + A++ A++ G L + Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVL 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q ++ V +GV AI I P + ++ A ++IPV LDR D Sbjct: 61 DSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGD- 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ + +DN++ G++ G+++V++V G+ V++L+G G S A +R +GF A+K Sbjct: 120 --VVSHIASDNVVGGEMAGNFIVEKV-GEKAKVIQLEGIAGTSAARERGEGFMNAVK-GS 175 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 +++++ SQ DF R+KG VME+ + A ++ V+A ND+M +GA++AI+ +G Sbjct: 176 HMELLASQPADFDRTKGLNVMENLLAAN---PDVQAVFAQNDEMALGALRAIQASG---- 228 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 K+++ DG D A+ G+ A++ P++ G G E Sbjct: 229 KEVMIVGFDGTDDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLK 288 Query: 300 LYLP 303 + Sbjct: 289 VVTK 292 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 148/324 (45%), Gaps = 19/324 (5%) Query: 1 MWK---RLLIVSAVSAAMSSMA-------LAAPLTVGFSQVGSESGWRAAETNVAKSEAE 50 M K L+I +A +++ A + +G S S+ +R N ++EA+ Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 51 KR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFL 109 L + + + Q + + VAQ +AI + PV + A D+ IP+ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 110 LDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKK 169 ++ + +D + V +D+I G + ++ VK++NGK NVV L+G AI R + Sbjct: 121 VNNFLKNQDDAA--AYVGSDSITSGIMEAEYAVKQLNGK-GNVVILKGEPNHETAIKRTE 177 Query: 170 GFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 GF + ++N P IKII Q GD+ R+ G ++ E++IK NG + A+ND+M IGAI Sbjct: 178 GFKQVLQNYPEIKIIDEQYGDWKRTLGMQITENWIK---NGTKFDAILANNDEMAIGAIM 234 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 A+KE L ++ G ID PD K + +G +V G G Sbjct: 235 ALKENNL--INNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGEK 292 Query: 290 PEKLTLTKSTLYLPDTAKEELEKK 313 K L +P+ A + L K+ Sbjct: 293 INKKIFVPYELVVPNDADKYLGKQ 316 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 79/323 (24%), Positives = 131/323 (40%), Gaps = 22/323 (6%) Query: 1 MWKRLLIVSAVS-------AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 M K L +V + ++ + + W AK AE+ G Sbjct: 4 MKKSLFVVLVLVGLLLVSFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLG 63 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 I D Q + + +A G DAI P A G +K AK+A IPVF +DR Sbjct: 64 YEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG 123 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV-----NGKPCNVVELQGTVGASVAIDRK 168 I+ + L + + +DN G L+G++ VK + + K EL G + A DR Sbjct: 124 INA--RGLAVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRS 181 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 GF + P K++ QS +F R +V E ++A I ++ ND M +GA+ Sbjct: 182 NGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAH---PEIKAIWCGNDAMALGAM 238 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE-ANASVELTPNMAGP-AFDALEKYKKD 286 +A + AG DI DG D+ A+ +G+ A++ P + A + ++Y + Sbjct: 239 KACEAAGRT---DIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRG 295 Query: 287 GTMPEKLTLTKSTLYLPDTAKEE 309 ++ L + + Sbjct: 296 ERSFPEIVPVTVELVTRENIDKY 318 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 97/327 (29%), Positives = 143/327 (43%), Gaps = 24/327 (7%) Query: 1 MWKRLLIVSAVSAA-----------MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEA 49 M K+ + + +A +S+ +G SQ WR A + A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 50 EKR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 EK + AD Q QI + +FV GVD I +P AT + A DA IPV Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 LLDR ID Y + ADN+ G++ G+++ + V E++G G S IDR Sbjct: 121 LLDRKIDGDK---YTQFIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGIDRD 177 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 GF E IK I+I+ + D+ R K V E ++ I + A ND M GA Sbjct: 178 NGFREGIKKNDKIEIVAVNNADWLREKAITVAEEMLQTN---DEIDLFLALNDPMAEGAY 234 Query: 229 QAIKEAGLKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKK 285 A K AG + DIL DG+P +++MDG + + ++ P A ++ + Sbjct: 235 IAAKNAGREG--DILFVGFDGLPTPDGGIRSVMDGRLSMT-QVYPTGGTEAIESAYQLLV 291 Query: 286 DGTMPEKLTLTKSTLYLPDTAKEELEK 312 +G +K S + PD A+E LEK Sbjct: 292 EGKELDKTLTLTSEIVTPDNAEELLEK 318 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 15/299 (5%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRS 74 + + T+G SQ +R + AEK ++ AD + Q+ V + Sbjct: 41 ACKGPDSKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVEN 100 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 F+ + VD + I+P A V+K+A + IPV +LDR ++ + + T + ADN+ G Sbjct: 101 FMTKKVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGE---AFTTYIGADNVQIG 157 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 + G++ + + +V+L+G G++ A +R+KGF E I I+++ + G++ RS Sbjct: 158 RQAGEYFKNTLLPQGGKIVQLKGLSGSTPAAEREKGFMEGIA-GSKIEVVDTADGEWERS 216 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP--- 251 G++ M++ +KA +I VYA ND M GA A + AG KD+ IDG+P Sbjct: 217 VGQQKMDALLKAH---PDIQAVYAQNDPMAEGAWLAAQAAGR---KDLKFVGIDGLPIES 270 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 KA+ G +A+ L P A +A K D K + L + A + Sbjct: 271 GGIKAVEQGRLSAT-NLYPTGGEEAVEAARKLLIDCQPVPKEQTLPTELVTRENAAQVY 328 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 140/309 (45%), Gaps = 16/309 (5%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K + ++ + + A +G +Q + WR + EA G++++I Sbjct: 8 MKWITVLFCLLGLAACRQDAPRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVEIRS 66 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q + V F+ +GVD + I+ A P+++EA IPV L+DR I Sbjct: 67 AADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSDK-- 124 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y + ADN G+ +G+++ + GK NVVEL G G++ A++R +GF AI N P+ Sbjct: 125 -YTAYIGADNYEIGRAVGNYIASSLKGK-GNVVELTGLGGSTPAMERHQGFMAAISNYPD 182 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK+I + R + M+S ++ I VYAHND + GA QA K+AG + K Sbjct: 183 IKLIDKADAAWEREPAEVEMDSMLRRH---PKIDAVYAHNDRIAPGAYQAAKKAGRE--K 237 Query: 241 DILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 +++ ID +P + + ++D +A+ + P + + T+ Sbjct: 238 EMIFVGIDALPGKGNGLELVLDNVLDATF-IYPTNGDKVMQLAMNIL-EKKSYPRETVMN 295 Query: 298 STLYLPDTA 306 + + A Sbjct: 296 TAVVDRTNA 304 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 152/310 (49%), Positives = 199/310 (64%), Gaps = 5/310 (1%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 V+A+++S A +T+GFSQVG+ES WR A T K+ A+ GI LK +D QQKQE Sbjct: 15 AALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQE 74 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 NQIKA+RSF+AQ VD I +PVV +GWEPVL EAK+A+IPV L DRSIDVKD SLY+T + Sbjct: 75 NQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVKDTSLYVTMI 134 Query: 127 TADNILEGKLIGDWLVKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 +D + EG+ G WL + + N+ ELQGTVG++ A DR G E IKN P KII Sbjct: 135 GSDFLEEGRRAGRWLEERYKNEAGPINIAELQGTVGSAPANDRHAGLMEVIKNDPKFKII 194 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 SQSGDFT + GK+VME+F K GK I +VYAHNDDM +GAIQA++EAG+KPGKD+ Sbjct: 195 ASQSGDFTLAGGKQVMEAFAKTY--GKQINVVYAHNDDMALGAIQAMEEAGIKPGKDVSV 252 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 S D ++AM+ G+ N VE +P + K G K +T T++ Sbjct: 253 VSFDATKGGFEAMIAGKINVDVECSPLLGPQLM-TAVKDVVAGKQLPKRIVTNETVFPMS 311 Query: 305 TAKEELEKKK 314 A + L ++K Sbjct: 312 VAAQILPQRK 321 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 143/345 (41%), Positives = 189/345 (54%), Gaps = 35/345 (10%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP--------------------------LTVGFSQVGSE 34 M K+L+ + + + + A +T+GFSQVG+E Sbjct: 1 MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60 Query: 35 SGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGW 93 S WR A T KS EK G L AD QQKQENQIKAVR F++Q VD I IAPV TGW Sbjct: 61 SDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGW 120 Query: 94 EPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKP---- 149 E VL EAKDA+IPV ++DR I V D SL+ V +D EG +WLV + K Sbjct: 121 ETVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKTDK 180 Query: 150 CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENN 209 NVV LQGT+G+S I R KGF + IK N I+ Q+G+FT++KG+EVMESF+K N Sbjct: 181 QNVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQEVMESFLKQYN- 239 Query: 210 GKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELT 269 +I +V A ND+M GAI A+K AG PGKD+ S D V +K+M+ G+ N SVE Sbjct: 240 --DIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDMNVSVECN 297 Query: 270 PNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 P + L K + EK+ +Y + A++EL ++ Sbjct: 298 PLHGPRVAE-LAKKLMNDEKVEKIQYVDEKVYPAEIAEKELPNRQ 341 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 153/297 (51%), Gaps = 11/297 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 + S + LTVGF+Q G+ + W A T + A++ G+ D + + Sbjct: 40 SSGSKEIGPDLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIE 99 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 +A+ +D + IAP+ TG E VL EA + +PV L R+ + Y+TTV +D E Sbjct: 100 DMLAKDLDILVIAPMEDTGLEAVLDEAAEKGVPVILSARTTQGE----YVTTVYSDQAWE 155 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFT 192 G+ + + +++ VVEL+G G S R+KGF + + P+++I+ Q+ +F+ Sbjct: 156 GERCAELIGEKIPD--AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFS 213 Query: 193 RSKGKEVMESFIKAENNGKN-ICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 R + + M + ++A G + I VY HND+M +GA+QAIK+AGL PG+DI IDG Sbjct: 214 RQEAMDAMANILQA--KGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQK 271 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 + ++ + GE +V+ +P GP + + DG +K T+ + + E Sbjct: 272 EAWELVKSGEMLGTVQCSPKH-GPTVFEVIQKILDGETVQKETIVPDQVITKENVDE 327 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 119/301 (39%), Positives = 162/301 (53%), Gaps = 8/301 (2%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A+ +A PL VGF+Q S + WR AET K A K G L + D Q+ ++ Sbjct: 41 ALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTDANSSNSKQVSDIQ 100 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID---VKDKSLYMTTVTADN 130 + +AQ VD + P PV+ +AK A IPV L+DR +D K Y+T + +D Sbjct: 101 NMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGSDF 160 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 I +G DWLVK GK ++EL+GT GAS A DRKKGF E I P + II SQSGD Sbjct: 161 IDQGHRAADWLVKATGGK-AKIIELEGTTGASAANDRKKGFDEIIAKNPGMTIIASQSGD 219 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 F R KG++VME+ ++A ++ VYAHND+M +GAI AIK AG +PGKDI +IDG Sbjct: 220 FARDKGRQVMETLLQAH---PDVTAVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGT 276 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 A+ GE ASV+ +P A D ++Y K G Y ++ + Sbjct: 277 KGGMDAIAAGELGASVQSSPFFGPLACDVAQRYAK-GEKIPTWVKVSDKFYDKSNVQQNM 335 Query: 311 E 311 + Sbjct: 336 Q 336 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 11/297 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV 76 + T+G + + T + +AE+ G L + D QQ +NQI + + + Sbjct: 38 ASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLI 96 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 AQ VD I +A V + P ++ DA IP+ ++ + ++ Y V D++L G+L Sbjct: 97 AQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHY---VGPDDVLAGEL 153 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSK 195 + E+ G+ NVV L+G +G S I R +G + I ++ Q+ +++R + Sbjct: 154 EMQNAIDEIGGE-GNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTANWSREE 212 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++E++++ + I + AHND+M +GAIQA++ AGL I+ +D + D Sbjct: 213 ALTLVENWLETFSG--KIDAIVAHNDEMALGAIQALEAAGLT--DKIVVTGVDAILDGCN 268 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT-LTKSTLYLPDTAKEELE 311 A+ DG +V + G +G + EK D E L+ Sbjct: 269 AVKDGTLLGTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITKDNVDELLD 325 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 129/300 (43%), Gaps = 12/300 (4%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQ 65 L++ + + +G + + + A+ EAEK G L + D Q Sbjct: 12 LMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDSQNDP 71 Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 + V + GV A+ I P + ++ A + IPV LDR + + Sbjct: 72 AKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANG---GKITSH 128 Query: 126 VTADNILEGKLIGDWLVKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 + +DNI G++ ++++ + + NVVE+QG GAS DR +GF + Sbjct: 129 IASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHNIMDKNDKFNF 188 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 I Q+ DF R KG +VME+ I+A NI +V+AHND+M +GA++AIK +G+ L Sbjct: 189 ISIQAADFDRQKGLQVMENIIQAN---PNIQVVFAHNDEMALGAVKAIKASGINA----L 241 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG D ++ E A + P++ G L G + +Y Sbjct: 242 VIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKIYKGESIKNKIAADLKVYTK 301 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 11/299 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 +S + VG + ++ + +N AK +A + G+ LKI DG QI V + Sbjct: 46 TSKPADKKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETM 105 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 ++ GVDAI + P A + +A A IPV ++ +D + + V + ++ G+ Sbjct: 106 ISDGVDAIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKL---TSYVGSKDVYAGE 162 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L + ++ GK N+V L G +G S ++R +G +K P+IK++ ++ +++RS+ Sbjct: 163 LEMQAIADKIGGK-GNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSE 221 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 VME++++A I V A ND+M +GA +AI+ L DI T +DG+ D Sbjct: 222 AMTVMENWLQA---FDKIDAVVAENDEMALGARKAIEAKKL----DIPTIGVDGITDALD 274 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 A+ G A++ G + K G +K D E ++ + Sbjct: 275 AVEKGTLIATIFQDGAGQGSKALEIAVAKAKGENVDKEYWIDFEPVTKDNVAEFKQRAQ 333 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 11/315 (3%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K+ +I +A+S + + A A TVG S + + N +++ G+TL++ D Sbjct: 1 MKKFIIGAAMSVLLGTAAHAE--TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR-SIDVKDK 119 Q Q +++F+A VDAI + PV + K A DA+IP+ ++R ++V Sbjct: 59 AQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSL 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK--N 177 V +D + G L + + + GK N V + G + A R + + +K Sbjct: 119 PDGQAFVASDETVAGTLEAKEVCRLLGGK-GNAVIMMGELSNQAARMRTQSAKDVLKTDE 177 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 I ++ Q+ ++ R++G +++ +++ + G V A+ND+M IGAIQA+K AG Sbjct: 178 CKGISVVEEQTANWQRTQGSDLVTNWLSS---GIEFNAVIANNDEMAIGAIQALKAAGKD 234 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 K + +D D AM G+ + +V G G EK Sbjct: 235 -MKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIP 293 Query: 298 STLYLPDTAKEELEK 312 L P+ K+ + K Sbjct: 294 FQLVTPENVKDYVAK 308 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 153/314 (48%), Gaps = 11/314 (3%) Query: 1 MW--KRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M KR+++V+A+ + S +A T+G S + + + EA+ RGI+++ Sbjct: 1 MKYLKRIVLVAALGCSTSVLAE----TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQF 56 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D + Q V++F++ GVDAI + PV + G + K A IP+ ++R+ Sbjct: 57 EDARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSK 116 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + V +D G L + L + N + NV + G + + A+ R K + + Sbjct: 117 LPAGVVFVGSDEKQSGTLQMEELARLANYQ-GNVAVMIGNLTDAGALQRTKDVEQVVAKY 175 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P +K+++ QS +++RS+G ++M ++I NG++I +V A+ND+M IGAI A+++AG + Sbjct: 176 PKMKVVQKQSANYSRSEGMDLMLNWIT---NGESIDIVAANNDEMAIGAIMALQQAGKQG 232 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 K +L G ID PD KA+ G+ +V G A + + G + Sbjct: 233 SK-VLVGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDPYYWIPF 291 Query: 299 TLYLPDTAKEELEK 312 L P ++ K Sbjct: 292 ELVTPANMQKYAAK 305 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 140/291 (48%), Positives = 184/291 (63%), Gaps = 5/291 (1%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + VGFSQ G+ES WR A + ++EAEKR + L ADGQ NQ+ AV F+ +GVD Sbjct: 45 EIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNNQVNAVNGFITKGVDV 104 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I IAP + GW+P LKEAK A IPV L R +D ++ LY T + AD + EG+ G+WL Sbjct: 105 IVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEE-DLYETVMVADFVWEGRRAGEWLA 163 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 K+ NGK ++EL GT A VA+ RK GFAEAI P++KII SQSGDFTR+KGK VME+ Sbjct: 164 KQTNGK-ARIIELVGTPAADVAVMRKTGFAEAIAKHPDMKIIASQSGDFTRTKGKTVMET 222 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 + A I VYAHNDDM +GAIQAI+ AGLKPG+DIL SID V ++AMM+G+ Sbjct: 223 LLSAHKG--EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVKPAFEAMMEGKL 280 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 NA+VE P FD ++K + G K T+ ++ + A + + Sbjct: 281 NATVECNPMHGPLLFDTIDKIVR-GEKVPKRTIVPGQIFEREQAAAAIGSR 330 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 13/299 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 LL + +S + S A A + + + + A+++A + G L D Q Sbjct: 12 LLSAALLSVSTSFSASAQDA-IAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIALDSQND 70 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 ++ V +GV AI I P A ++ A A IPV LDR+ D ++ Sbjct: 71 PSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHGD---IVS 127 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + +DNI G+L G+++ +++ GK V++L+G G S A +R +GF+ A+ N +++ Sbjct: 128 HIASDNIAGGELAGEFIAQQL-GKNAKVIQLEGIAGTSAARERGEGFSNAVTAN-NFELL 185 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 SQ DF RSKG VME+ + A ++ V+A ND+M +GA++AI+ AG KDIL Sbjct: 186 SSQPADFDRSKGLNVMENMLAANG---DVQAVFAQNDEMALGALRAIEAAG----KDILV 238 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG + A+ + +A+V P + G G + EK + Sbjct: 239 IGFDGTDEGIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQ 297 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 145/302 (48%), Gaps = 6/302 (1%) Query: 11 VSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIK 70 A S L +GFS+ WR AE AE G L + + E QI Sbjct: 55 TGAKASEDGGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIG 114 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDKSLYMTTVTAD 129 V +AQ D I I PV A P + K A IPV +D +D K K ++TT+ +D Sbjct: 115 DVEDLIAQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSD 174 Query: 130 NILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSG 189 +G+ +W V V K V+E+ G G S A +R +GF E + + NIK+I Q+G Sbjct: 175 QYQQGQGCAEWTVGHVGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVI-QQNG 233 Query: 190 DFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDG 249 +++R+ +EV+++ ++ G+ ++Y H+D+M +GA+ +K+AGLKP +D+ ++DG Sbjct: 234 EWSRATAQEVVQNVAQS---GQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDG 290 Query: 250 VPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + A+ E A + TP FD + KY G E+ + + E Sbjct: 291 QKEALDAIKADEIGAIITCTPKGGDVLFDCINKYFA-GDELEEEYFVHQSTITTENVDEL 349 Query: 310 LE 311 E Sbjct: 350 YE 351 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 13/304 (4%) Query: 1 MWKRLLIVSAVSAAMS-SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K ++SA + S S A TV + + + A+++A++ G L + Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q ++ V +GV AI I P + ++ A ++IPV LDR + Sbjct: 63 DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS---R 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ + +DN++ G++ G ++ ++ V++L+G G S A +R +GF A+K Sbjct: 120 GEVVSHIASDNVVGGEMAGHFIEAKIGSD-AKVIQLEGIAGTSAARERGEGFMNAVK-GS 177 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 ++++ SQ DF R+KG VME+ + A ++ V+A ND+M +GA++AI+ +G Sbjct: 178 KMQLLASQPADFDRTKGLNVMENLLAAN---PDVQAVFAQNDEMALGALRAIQASGKS-- 232 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 ++ DG D A+ G+ A+V P+M G G E Sbjct: 233 --VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALK 290 Query: 300 LYLP 303 + Sbjct: 291 VIAK 294 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 116/334 (34%), Positives = 169/334 (50%), Gaps = 25/334 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP-------------LTVGFSQVGSESGWRAAETNVAKS 47 ++++++IV AV A ++ A P + VG SQ GSES WR A T K Sbjct: 7 IFRKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKE 66 Query: 48 EA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 106 ++ G L + +QKQENQIKA+RSF++Q VD I +P+V GW+ VL+EA++AEIP Sbjct: 67 TLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIP 126 Query: 107 VFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNG-----KPCNVVELQGTVGA 161 V L+DR I+VKD+SLY V +D + EG+ G WL + G N+V LQGT G Sbjct: 127 VILMDRKINVKDESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGT 186 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 + R +GF E N I+ + DFT +KG+E M + I ++ + ND Sbjct: 187 TAMFGRTQGFEEIAAKHENWNILEQTNADFTTAKGEEEMRRLLNTY---PEIDVLVSQND 243 Query: 222 DMVIGAIQAIKEAGLKPGK--DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDA 279 DM GA++AI+ AG G DI S DG + + G N VE P G + Sbjct: 244 DMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPY-QGKYIEE 302 Query: 280 LEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + + + G EK + ++ L + Sbjct: 303 IIQALETGQSIEKDNYVEEKVFTQKNVLSVLNDR 336 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 11/299 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSF 75 + A A L +G + + + + + + L I D + + + Q + SF Sbjct: 39 TEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSF 98 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 VAQGVDA+ I+PV A +K DA IPV + ++ V + N G+ Sbjct: 99 VAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVW---VGSSNENGGE 155 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + ++ +++ GK + L+G +GA R G+ +K+ P+I+I+ Q+G++ R + Sbjct: 156 IEMKYVAEKLGGK-GKIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQREE 214 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++E+ + A G + + ND M +GA++A+K AG K I ID + D Sbjct: 215 AMALIENLLTA---GTELDAIVCQNDGMALGALEAVKAAGKK--DQITITGIDAIVDALD 269 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 ++ GE +A+ G + G E++ L D ++ K Sbjct: 270 SIKAGELDATCFQDAIGQGTNALDMAVKAARGETVERM-DIPFELVTKDNVDGYYDRIK 327 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 10/294 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++ A+ T+ F+ + + A+ +A++ G+ + D Q + + Sbjct: 40 TTTGSASAKTITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLANA 99 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 A G + I P + P +++ D +IPV +DR+++ + + + +DN GK Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNAN---VASYIASDNETGGK 156 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L +NG+ ++ LQG G+S + +R KGF E +K+ PNIK++ Q+ +F R+K Sbjct: 157 QAAKVLSDAINGE-GEILVLQGKTGSSASRERGKGFDEGLKDNPNIKVVAKQTAEFERAK 215 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 G +V + ++A N+ ++A ND+M +GAI+A+ G K GKD+ DG D K Sbjct: 216 GLDVTTNLLQAH---PNVKAIFAENDEMALGAIEAL---GSKAGKDVKVIGFDGAEDALK 269 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 A+ DG AS+ P G K + + + Sbjct: 270 AIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKKMQVEVVAATKENVDKF 323 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 7/316 (2%) Query: 1 MWKRLLIVSAVSAAMSSMAL-AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKI 58 M K LL + ++S A+ A +G W+ + + EK + +K+ Sbjct: 1 MKKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKL 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 AD Q+ V++F+ Q VDA+ + P T + + AK A IP+ +++R + + Sbjct: 61 ADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEH 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 + V +D I G++ G+++V + GK + L G +G R +G E Sbjct: 121 MQYVTSFVGSDEIEGGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQH 180 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 NIK++ Q G + R +G + E+ + K I ++ ++ND+M IGAI A ++ G+K Sbjct: 181 KNIKVVSKQEGRWERDRGLAIAENVLAGN---KGINVIVSNNDEMAIGAILATRKLGIK- 236 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 +DI +D PD + + G +A+V + G + G + Sbjct: 237 DEDITIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPF 295 Query: 299 TLYLPDTAKEELEKKK 314 L PD +E + K Sbjct: 296 ELVTPDKKEEYQARYK 311 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 181/316 (57%), Gaps = 9/316 (2%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M + LL+ + A + LTVGF+Q GSES WRAA + KSEAEK+GI L+ D Sbjct: 1 MKRSLLVAAFALLACTVSQA--KLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFVD 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q +NQ+KA+RSF+A VDAI +AP+V +GWE VL++AK A IPV ++DR I D S Sbjct: 59 AQSNVDNQMKALRSFIADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKIVA-DPS 117 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-- 178 LY T + +D EG++ +W++ + K +VELQG G+S A +R++ FA + Sbjct: 118 LYATFIGSDFFKEGQMAAEWILAHADQKR-KIVELQGEPGSSAANERQRAFASTMATHTS 176 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 +I+ + +F R +G++ M + G +I +V+AHNDDM +GAI+AI+ G P Sbjct: 177 DGFRIVARKVANFRRDQGRQAMAELLTTH--GSDIEIVFAHNDDMALGAIEAIEAVGRSP 234 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKS 298 G+DI+ SID + +A+ G+ N +VE P +A+ + GT K T K Sbjct: 235 GRDIMVVSIDAIKTAVEAVASGKLNCTVECNPLFGPKVIEAVVRLTSGGT-VMKETFNKD 293 Query: 299 TLYLPDTAKEELEKKK 314 + A + L ++ Sbjct: 294 IVIDASNAAQLLPSRQ 309 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 153/289 (52%), Gaps = 3/289 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 VGFS++ + WR A+ + + EAE RG +++ + QI V + Q +D + Sbjct: 71 FKVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFL 130 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 FIAP+ P ++ AK +P LLDR + Y+ T+ ++ I +G+ DWL + Sbjct: 131 FIAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYIWQGEACADWLSE 190 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +V++ G VG S DR+ GF +K N++I+ +QSG+++R++ ++VM++ Sbjct: 191 NGGADSYKIVQITGKVGGSDVRDRQAGFETGVKKYENMEIVATQSGEWSRTEAQKVMQNI 250 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 I++ G + +VY HND+M +G + A+K AG+ PG D+ +IDG + +A++ GE N Sbjct: 251 IQS--TGGDFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAIIAGEMN 308 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 P AFD +EKY + E + + + A+E+L Sbjct: 309 CIATCNPRFGPVAFDTMEKYL-NEEKLEHIINNEEYIIDSTNAEEKLPD 356 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 11/315 (3%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K+ +I A + +S+ A A T+G S + + N + A+ G+ L+I D Sbjct: 1 MKKFIIGIAAAVLVSTAAHAE--TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQIED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS-IDVKDK 119 Q +++F+A GVDAI + PV + K A DA IP+ ++R +++ Sbjct: 59 ALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNIDTL 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK--N 177 V ++ + G L + K ++GK V + G + A R K + + Sbjct: 119 PEKQAFVASNEVDSGTLQTREICKLLDGK-GKAVVIMGELSNQAARMRTKDIHDVLATDQ 177 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 I+I++ Q+ ++ R++G ++M +++ A G V A+ND+M IGAIQA+K AG Sbjct: 178 CKGIEIVQEQTANWQRTQGADLMTNWLSA---GIEFDAVIANNDEMAIGAIQALKAAGRS 234 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 ++ G ID D AM GE + SV G G E+ Sbjct: 235 -MDSVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIP 293 Query: 298 STLYLPDTAKEELEK 312 L E K Sbjct: 294 FELVTKANLAEFQGK 308 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 256 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 14/308 (4%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV 76 + A +GFS + + + A+++G L + + Q+ + + Sbjct: 61 ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLL 120 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 +QGV A+ + P+ + P +++A IPVF LDR D + V +DN+ G+ Sbjct: 121 SQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDR---GSDGGKVTSFVASDNVALGQT 177 Query: 137 IGDWLVKEV----NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 W+ ++ NVV+L G VG + A DR+KGF++ I P+IK++ Q G F Sbjct: 178 AAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFD 237 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD----ILTGSID 248 + K M + ++ I V+ NDD +GA +AI AG D IL D Sbjct: 238 QEKSLNAMTNILQKY---PQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGAD 294 Query: 249 GVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 G A+ G+ +A++ P + L Sbjct: 295 GTAQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDKSNIDS 354 Query: 309 ELEKKKNM 316 + KK + Sbjct: 355 DATKKYGL 362 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 30/333 (9%) Query: 1 MWKRLLIVSAVSAAMS-------------------SMALAAPLTVGFSQVGSESGWRAAE 41 M K I+ A S MS S + +G S + + Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLD-EFLTYM 59 Query: 42 TNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 100 + K EA +D Q Q+ V +F+++ VDAI + PV T ++ Sbjct: 60 QDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119 Query: 101 KDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG 160 DA IP+ + +R+ D D++ V +++I G L + + K +N N+ + G +G Sbjct: 120 NDAGIPIIIANRTFDGVDQA--TAFVGSESIQSGLLQMEEVAKLLN-NEGNIAIMDGELG 176 Query: 161 ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 I R +G + I+ ++++ + F RS+G +ME+++ N+G I V A+N Sbjct: 177 HEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWL---NSGTEIDAVVANN 233 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDAL 280 D+M +GAI A++ G D++ ID P +AM +G+ + +V G + Sbjct: 234 DEMALGAILALEAVGK--LDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKV 291 Query: 281 EKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 +G E + L P+ +E K Sbjct: 292 AVQAANGEDVE-DAMIPYELVTPENVEEYEAKY 323 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 163/288 (56%), Gaps = 4/288 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ-QKQENQIKAVRSFVAQGVDA 82 L VGFSQ+ +++ WR A+ N + G+ + + E Q++ + + + VD Sbjct: 42 LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + I P PVL++AK+A+IPV L+D+S + D+S Y++ ++AD + EG++ D L Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILIDQSAETIDQSYYISLISADYLKEGQICADLLA 161 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 ++ PC +VE+ GT + A R KGF +A++ PN++II + G+F R ++ ME+ Sbjct: 162 EKFGDTPCRIVEIYGTESSPGAQARSKGFHQALQQYPNMEIIDIEYGNFDRVTAQKAMEN 221 Query: 203 -FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 IKA +G+ I V+AH+D+ +GA+QAIK AGL PG+ I SI+G+ D+ KA++ GE Sbjct: 222 ALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGR-ISIVSINGIQDVCKAIIAGE 280 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +VE P G +L + K+ G P + + + A E Sbjct: 281 YLGTVESNPRW-GFIVASLIQQKERGYKPFPTVMIPYRIITAENAAEY 327 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 17/307 (5%) Query: 4 RLLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAE--KRGITLKIAD 60 L + A+ A ++ P +G SQ E WR K E + + I Sbjct: 8 ILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEVLIRS 66 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + QI + F+ Q VD + ++P + PV+++A IPV L+DR I + Sbjct: 67 VKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATE--- 123 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y V A+N GK G + + + GK N+ E++GT G++ +R KGF +A+KNAP Sbjct: 124 SYTAYVGANNYQIGKEAGLYAIGVLKGK-GNIAEVRGTKGSTSDAERHKGFVDALKNAPE 182 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 ++I+ G+F ++ K M+ + +I +V+A ND M G +A + GK Sbjct: 183 VQIVAETWGNFLQADAKTQMQQIFQEH---PHIDLVFAMNDPMAAGTHEAAMQFN---GK 236 Query: 241 DILTGSIDGVPD-IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 +D + + + + +AS G L ++ + +T Sbjct: 237 IPFIIGVDALQQVGIQNIENSVQDASFIYP--TGGEKVIELAMKILHKQPFQRENILNTT 294 Query: 300 LYLPDTA 306 + Sbjct: 295 VVDKSNV 301 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 134/319 (42%), Gaps = 14/319 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 KR+L+ + ++ S A A +G S + + N + + + +++ D Sbjct: 1 MKRILLAAVMAINFSCSAGAES--IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQMED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q Q V++F+A GV AI + PV E + K A DA++P+ ++R D+ Sbjct: 59 AQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVDRL 118 Query: 121 LYM-TTVTADNILEGKLIGDWLVKEV----NGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + +D + G L + + + GK NVV + G + + R K + I Sbjct: 119 PETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHDVI 178 Query: 176 K--NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 +K++ Q+ ++ R++ +M +++ A G V A+ D+M IGAIQA++ Sbjct: 179 ATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA---GIQFDAVIANADEMAIGAIQAMRS 235 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 AGL P KD + IDG D + M G + +V G G ++ Sbjct: 236 AGL-PVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLARGKKTDRT 294 Query: 294 TLTKSTLYLPDTAKEELEK 312 L P + + + Sbjct: 295 IWVPFQLITPTNVADFVGR 313 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 138/305 (45%), Gaps = 13/305 (4%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK-RGITLKIADGQQKQENQIKAVRSF 75 +G SQ +R + K+ A + +K AD Q Q+ V ++ Sbjct: 40 CKGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENY 99 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + Q +D + I+P A V+K+A D IPV +LDR ++ Y + DN+ G Sbjct: 100 ITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGD---AYTGFIGGDNVQIGT 156 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 G ++ ++V NVVE++G GA+ +R +GFA IK P +K++ + SGD+ R K Sbjct: 157 EAGKYVAEKVLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREK 216 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP---D 252 G+ M++ +KA I +VYAHND M GA A K G + K++ ID +P Sbjct: 217 GQAQMDALLKAN---PKIDVVYAHNDPMAEGAYLAAKAVGRE--KEMKFIGIDALPIPSG 271 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 KA+ G A+ P A A +K D EK + L A + + Sbjct: 272 GIKAVEQGRLTATFT-YPTNGKEAIAAAKKLLVDCGTIEKTQTLPTRLIDKTNAAQIYAQ 330 Query: 313 KKNMG 317 + G Sbjct: 331 ENPTG 335 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 134/325 (41%), Gaps = 28/325 (8%) Query: 1 MWKRLLIVSAVSAAMSSMALAA---------------PLTVGFSQVGSESGWRAAETNVA 45 M + L+ ++ M S V S + A Sbjct: 1 MKGKRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGA 60 Query: 46 KSEAEKRGITLKIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 A++ G+ +++ + + Q + + +GVDA+ +AP+ +A+ Sbjct: 61 NDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKE 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 +IPV L+D + K + V NI GKL G+++ K++ K + ++G G Sbjct: 121 KIPVVLIDTDANWDKKK---SFVGTGNIAAGKLGGEYISKKLK-KGDEAIIIRGVPGDRT 176 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 +R +G +A++ A IK++ Q + R K VME+ ++ NI V+ ND+M Sbjct: 177 QDERTQGAQKALEAA-GIKVVEIQPANSEREKAISVMENLLQTH---PNIKGVFCTNDEM 232 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 +GA++A+++AG K+I++ +DG PD K++ +G +V G Sbjct: 233 ALGAVKALQQAGK---KNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGKKGVETAVK 289 Query: 284 KKDGTMPEKLTLTKSTLYLPDTAKE 308 G E T +TL E Sbjct: 290 VLRGEKVETRIDTGTTLVDKQNVNE 314 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 18/312 (5%) Query: 1 MWKRLLIVSAVS--AAMSSMALAAPLTVGFSQVGSESGWRAAETNVA-KSEAEKRGITLK 57 M K LL + S +G SQ + WR + + G+ ++ Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 I + NQI+ + F+ + VD + +AP A PV+++A IPV ++DR I Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKILSD 119 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 Y V ADN GK +G ++V + GK ++E+ G G++ A++R +G A+A+K Sbjct: 120 ---RYTAFVGADNCEIGKDVGQYIVNRLGGK-GKILEITGLEGSTPAMERHRGLADALKA 175 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 P I+I S G + +S E M+S ++ K I +V+A ND M +GA + + Sbjct: 176 EPGIEITASVDGAWLQSVAGEKMDSILQDN---KGINLVFAQNDRMAVGAY--LSARQRQ 230 Query: 238 PGKDILTGSIDGVPD---IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 K++L ID +P + +++G +A+ + P + E+ T Sbjct: 231 LEKEMLFVGIDALPGKGYGVEQVLEGVLDATF-IYPTGGDKVMQVAMDIL-EKRPYERDT 288 Query: 295 LTKSTLYLPDTA 306 + L A Sbjct: 289 KLSTALVDKTNA 300 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 185/292 (63%), Gaps = 5/292 (1%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 L VGF+Q+G+ES WR A T + A + G+ L ++D QQ+QENQIKA+RSF+AQGVD Sbjct: 46 ELVVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQQQENQIKAIRSFIAQGVDV 105 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I ++PVV TGW+ V E K A IP+ LLDR+ +V D LY + +D + EG+ + Sbjct: 106 IGVSPVVETGWDEVFAEVKQAGIPLILLDRNANVPD-DLYSVRIGSDFVEEGRRACGEMA 164 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 + ++G+ +V L+GT G++ I R GF E +++ P + II SQSGDF R++GKE M + Sbjct: 165 RLLDGQGA-IVVLEGTQGSAPMIGRGTGFQECLQSYPALHIIDSQSGDFIRARGKEEMAA 223 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++ G +I V+A NDDM +GAI+AI+E GL+PG DI SID V ++AM+DG+ Sbjct: 224 LLQKH--GNSIDGVFAQNDDMALGAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKL 281 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 NA++E P + GP F A +G EK +Y DTA +EL K++ Sbjct: 282 NATIECNP-LLGPLFFATALNLANGIPVEKWIKPDEGIYRQDTAAQELSKRE 332 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 133/309 (43%), Gaps = 15/309 (4%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQKQENQIK 70 A S +GFSQ WR + K E TL D + QI Sbjct: 38 MAGCQSATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQIS 97 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 +++ + QG+D + ++P + V+++ IPV LLDR I+ + Y + DN Sbjct: 98 QIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETE---SYNAYIGGDN 154 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 + G+L G ++ + GK +VE+ G +S A +R +G E ++ P I++++ +G Sbjct: 155 VEIGRLAGVFIGNHLKGK-GRIVEIWGLPSSSPAQERHRGLLEELRKYPGIQVVKELNGQ 213 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 + R V+ + + N K++ +V+AHND M +GA K+ G++ K + ID + Sbjct: 214 WERDTVGRVVAAEL---NTLKDVDLVFAHNDVMALGAYAVCKQKGIE--KKLDFVGIDAL 268 Query: 251 P---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 P +A+ DG AS P A + + G ++ + S + Sbjct: 269 PGPNAGMQAITDGILKASFL-YPTGGEEAIETATRILA-GKSVKREQVLNSIQIDGSNVR 326 Query: 308 EELEKKKNM 316 + + Sbjct: 327 ALKAQSDKL 335 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 125/310 (40%), Gaps = 15/310 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 ++ PL +G+S ++ + + ++ AE+ GI + IAD + Q+ Q+ Sbjct: 32 TTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVIADQKSSQQEQVSGSLDL 91 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + QG+ A+ I PV + + A +IPV + D + Y + ++N G+ Sbjct: 92 INQGISALIITPVQPSALPSTIDAAHGEKIPVVVADIGTEGD----YDGYILSNNYEGGR 147 Query: 136 LIGDWLVKEVNGKPC--NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 L + +V+++ G P V ++ G+ V +R GF + + N +I+ S G+ T Sbjct: 148 LAAEHVVEKLGGTPGPHQVGVIELHAGSVVGEERVSGFVDRLGEEENFEIVSSLDGNDTV 207 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 G + + A + ++YA NDD +GA +A++ AG+ DG Sbjct: 208 DGGFTAAQDMLSAN---PELDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDPA 264 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPE------KLTLTKSTLYLPDTAK 307 + G + +V P G +G P K + + Sbjct: 265 LDLIEQGVMSGTVAQDPFGQGQKAVETALALLNGEDPGYSDEATKTIYFPVEMVTAENVA 324 Query: 308 EELEKKKNMG 317 E +++ G Sbjct: 325 EFRASRESQG 334 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 122/309 (39%), Gaps = 10/309 (3%) Query: 5 LLIVSAV--SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG- 61 LL+ + A S+ L G+ + + + A+ E+ G + Sbjct: 121 LLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFRGPS 180 Query: 62 -QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + ++ QI V+ F+ VD I +AP+ A +KEA A +PV + D ++ D Sbjct: 181 KENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNT-DPG 239 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 +++ V DN GKL G+ + + K +V+ L+ G+ R++GF +I N Sbjct: 240 DFVSYVATDNFEGGKLAGEAMANALGEKGGDVILLRYEQGSESTHQREEGFLYSIAEYSN 299 Query: 181 IKIIRS-QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 I+++ S Q T + ++ + G + + GA++A++E K Sbjct: 300 IRVLSSDQYAGTTTESAIDKAQALL--NRFGDEADGICTVCEPTAEGALRALRE--RKLA 355 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 + + D + +++ GE NA V P G G PE+ T Sbjct: 356 GKVKLVTFDSSDSLRESLSAGEVNAIVLQDPVAMGYQAVKTMAAHLRGETPEQFIDTGVF 415 Query: 300 LYLPDTAKE 308 + + Sbjct: 416 VATAKNQDD 424 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 149/304 (49%), Positives = 206/304 (67%), Gaps = 5/304 (1%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQKQENQIKA 71 A S+ ++ +GF+QVG+ESGWR AET+ KS LK +DGQQKQENQIKA Sbjct: 34 AKTSAANSSSKKIIGFAQVGAESGWRTAETDSIKSIPTLDPNFDLKFSDGQQKQENQIKA 93 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 +RSF+AQ VD I + PVV TGW+ VLKEAKDA+IPV ++DR + V D SLY + +D + Sbjct: 94 IRSFIAQKVDLIALDPVVETGWDTVLKEAKDAKIPVVIVDRKVTVSDDSLYKCFLGSDMV 153 Query: 132 LEGKLIGDWLVKEVNGKPC-NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 EGK L+ + N+ ELQGTVG++ + R++GF +AIK+ PN KII+SQ+GD Sbjct: 154 AEGKKAAQILIDQFGKDATLNIAELQGTVGSTAMVGRQQGFNDAIKDCPNYKIIKSQTGD 213 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 FTR+KGKEVME+F+K+ +G I ++++HNDDM +GAIQAI+E G KPGKDI S+DG+ Sbjct: 214 FTRAKGKEVMEAFLKS--DGDKINVLWSHNDDMAMGAIQAIEEYGKKPGKDIFIVSVDGI 271 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 DI++AM+DG+ANA+VE P + + + K DG E+ +K + +L A EL Sbjct: 272 KDIFQAMVDGKANATVECNPLLGPQLLE-VAKNILDGKEVERTINSKESQFLQKDAAAEL 330 Query: 311 EKKK 314 +K Sbjct: 331 PNRK 334 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 138/324 (42%), Gaps = 23/324 (7%) Query: 1 MWKRLLIVSAVSAAMSS-------------MALAAPLTVGFSQVGSESGWRAAETNVAKS 47 M KR L V V A + S +T+GFS + + A + A+ Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 48 EAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 107 A+++G+ L +AD + QI + +AQ VDA+ + P G PV+ A +A+IP+ Sbjct: 61 AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 108 FLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDR 167 + + I K+ Y V + G+++G W V + ++G +G S + R Sbjct: 121 IICNGDIADKN---YTAFVGCTDQESGEILGTWFNDNVEH-GSQICIIEGPMGQSGQVGR 176 Query: 168 KKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGA 227 GF E N +++ Q+ ++ R + + E ++ G + + NDDM +GA Sbjct: 177 YAGFEEV-GMLDNFEVLSCQTANWKRDEAMALAEDWLTTY--GDKLKAIVCENDDMAMGA 233 Query: 228 IQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDG 287 + A K AG D++ G +DG+ D +A+ DGE SV G + +G Sbjct: 234 LSACKAAGRT---DVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQIING 290 Query: 288 TMPEKLTLTKSTLYLPDTAKEELE 311 +K T D LE Sbjct: 291 EDYQKDTRIPFHAITSDNVDAYLE 314 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 13/287 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + VGFS + + A+ +G+ L D Q K V F+ QGVD Sbjct: 58 EQIVVGFSNWSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVD 117 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I + P+ + + A IP+ D ++ D + + +DN L G+L ++ Sbjct: 118 GIVLCPIDSNAAVTEAETINQAGIPLVTTDIAVAGGD---VASHIASDNTLGGQLAAQFI 174 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGKEVM 200 +++ G V + + I+R+ GF + + P+I+I+ QSG+ R KG VM Sbjct: 175 GEQLGG-TGKVALIN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVM 232 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDG 260 E+ +++ ++ V+A ND M +GA+QA++ A DI+ D + K + +G Sbjct: 233 ENILQSN---PDVQGVFAVNDMMGLGALQAVQAAQR---DDIVIVGFDATEEAVKYIKEG 286 Query: 261 E-ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 ASV P G G EK L A Sbjct: 287 SALKASVAQNPVELGKTTMETMLKVIAGEQVEKNIPVPVELVTAGNA 333 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 17/307 (5%) Query: 4 RLLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAE--KRGITLKIAD 60 L + A+ A ++ P +G SQ E WR K E + L I Sbjct: 17 ILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTELLIRS 75 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + QI + F+ Q VD + ++P + PV+++A IPV L+DR I + Sbjct: 76 VKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATE--- 132 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y V A+N GK G + + + GK N+ E++GT G++ +R KGF +A+ NAP Sbjct: 133 SYTAYVGANNYQIGKEAGHYAIGILKGK-GNIAEVRGTKGSTSDAERHKGFVDALNNAPE 191 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 ++I+ G+F ++ K M+ + NI +V+A ND M G +A + GK Sbjct: 192 VRIVAETWGNFLKADAKVQMQQLFQQH---PNIDLVFAMNDPMAAGTHEAAMQFN---GK 245 Query: 241 DILTGSIDGV-PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 +D + + + + +AS G L E+ + + Sbjct: 246 IPFIIGVDALQQEGISNIENNVQDASFIYP--TGGEKVIDLAMKILHKQPFERENILNTA 303 Query: 300 LYLPDTA 306 + Sbjct: 304 VVDKSNV 310 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 142/287 (49%), Gaps = 7/287 (2%) Query: 26 VGFSQV-GSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 VGFSQ + + +R+ ET+ ++A+ G+ L + Q + +AQG + Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLI 143 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 +AP + G P L EAK +IPV +DR++ S ++ + ++ + ++ D L Sbjct: 144 VAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTACSDFIAFIGSNFYGQAQIAADDLATA 203 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKGKEVMESF 203 + V L GT G +V DR GF + +K PN+ ++ SQ+G F ++ G+ VM Sbjct: 204 TGSQ-AKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKFDQTDGQSVMAQM 262 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 ++A I VYA ND+M +GAIQAI AG KPGKDI SIDG + + G Sbjct: 263 LQAN---PGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQAVQDVAAGTIY 319 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 A VE P AF +L+ + + K+ + S + A++ L Sbjct: 320 ADVETNPRFGPLAFSSLQAFFGTSGVASKVIIKDSH-FTQANAQQAL 365 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 13/302 (4%) Query: 18 MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADG--QQKQENQIKAVRS 74 + + + S A A+++A++ G + L + Q++ + Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + Q DAI IAP T PV+++A DA IPV L+D + Y++ V DNI Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK---YVSFVATDNIKAA 159 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTR 193 ++ D L + + GK + + G+ I R+ GF + +K P+I+II +Q + Sbjct: 160 EMAADKLGELLGGK-GKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDK 218 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 ++ + A ++ Y N+ IG AIK+ L + D Sbjct: 219 NRALNQALDILTAH---PDLAGFYGTNEGSTIGIAMAIKQKDLAG--KVKVVGFDISQAT 273 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 A+ + AS+ P M G + K G K T T+ D E +++ Sbjct: 274 INAIKENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTVMTKDNVDEVVKEY 333 Query: 314 KN 315 Sbjct: 334 YK 335 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 11/302 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIADGQQKQENQIKAV 72 +++ + +GF+ + ++ EAE+ + + D + + QI V Sbjct: 36 SVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQV 95 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 +AQGVDAI PV E ++ A+ A +PV L++R V +D++ Sbjct: 96 EDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINR----DSVEREDAYVGSDSLQ 151 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 G + + + + GK + + G +G + I+R G + + P ++++ +G ++ Sbjct: 152 AGTIQMEEVAAVLKGK-GKIAIMNGQMGHTAQINRTLGNKQVVDQYPGMEVVIEGTGGWS 210 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R KGKE+MES+I++ G+ V A+ND+M IGAI A +EAG+ +++ IDG PD Sbjct: 211 REKGKELMESWIES---GQTFDAVVANNDEMAIGAIMAAEEAGI--VDELVFAGIDGTPD 265 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 M G+ SV G G EK+T E +K Sbjct: 266 ALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESAEKMTNIPYETITKRNVDEYKKK 325 Query: 313 KK 314 + Sbjct: 326 WQ 327 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 116/289 (40%), Gaps = 13/289 (4%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 + +G S + E + + +A+ I D Q Q+ V+ F+ Q Sbjct: 50 KSGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQK 109 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 VDAI +AP + G P + AK A IPVF +D + + V DN GKL Sbjct: 110 VDAIVLAPTASAGIAPAVDLAKKAGIPVFTIDIKAEGD----VKSHVATDNYAGGKLAAK 165 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 + ++V V + + +DR+KGF +A+ PNIK++ ++ + K + Sbjct: 166 YAAEKVLNGKGKVAIITYSE-VQSCVDREKGFKDALAEYPNIKVVDVENCSGSAEKAANL 224 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 + + ++ +++A D +GA+ IK AG + DG P+ + + + Sbjct: 225 TQDILLK---FPDLDLIFAVGDPFAVGAVSTIKAAGRN----VKVIGFDGNPEAIQEIKN 277 Query: 260 -GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G A V P+ G L +G L T+ AK Sbjct: 278 HGLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQVLIPPTIVDASNAK 326 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 98/290 (33%), Positives = 154/290 (53%), Gaps = 8/290 (2%) Query: 25 TVGFSQVG-SESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 TVGFSQ + +R AET K EA KRG+ L + Q + QI V+ +A+G D + Sbjct: 82 TVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGADLL 141 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 IAP+ + GWEPVL+ A +IP+ +DR I+ Y++ + +D + +G+ D +++ Sbjct: 142 VIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQGRRAADKMIE 201 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAE-AIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 GK V L G G +V +R KGF + + AP +K++ Q+GDF R KG+ V E Sbjct: 202 ATGGK-GEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSVTEQ 260 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 I++ I +YA ND+M +GA+ A+K AG KPG + ++DG + K ++DG Sbjct: 261 LIQS---KPGIKGIYAENDEMGLGAVNALKSAGKKPGA-VKIVTVDGTRNAVKQIVDGWI 316 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + +E P AF L G ++ + K + Y A+ +L K Sbjct: 317 SGVIESNPRFGPLAFQTL-DTFTKGEEVQQDIVIKDSAYDKTNAEADLGK 365 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 138/313 (44%), Gaps = 10/313 (3%) Query: 1 MWKRLLIV-SAVSAAMSSMALAAPLTVGFSQVGSE-SGWRAAETNVAKSEAEKR-GITLK 57 M K+L I A S S+ + A +G +Q ++ K K + Sbjct: 1 MQKKLAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEGI 60 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + D QI V+ + Q VDAI + P P++++AK IPV + + +I K Sbjct: 61 VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISEK 120 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI-K 176 + + I +G+ + + + +NGK VV++ G G AI+R+KGF +++ Sbjct: 121 GQEFITAFSGPNTITQGQYAAELMCEGLNGK-GQVVQITGQPGYQTAINRQKGFEDSLAA 179 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + P + II SQ GD+ R K + VME+FI G I VYA +D+M IGA+ AIKEA L Sbjct: 180 DCPGVSIIDSQPGDWNREKSQRVMENFITR--FGTKIDGVYAADDNMGIGALNAIKEADL 237 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 K+I Y A+ +G SV +P A A+ +G EK Sbjct: 238 ---KNIKIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNGDKVEKDNYF 294 Query: 297 KSTLYLPDTAKEE 309 + E Sbjct: 295 DTPKVTLANIDEF 307 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 113/287 (39%), Gaps = 8/287 (2%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIA 86 G S + + K E E G L I D Q Q + + Q V IF+ Sbjct: 43 GASFQTMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKNDLSDLILQNVAGIFVN 102 Query: 87 PVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN 146 PV G + L EA ++P+ ++D + D+ L + TV +DN+ G+L L K VN Sbjct: 103 PVNWEGLKGSLLEANRKKVPIIIVDAPVKKADEELIVCTVASDNVRAGELAAQALAK-VN 161 Query: 147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKA 206 K VV IDR GF ++ P +KI+ Q T + VM I Sbjct: 162 PKARLVVL--HLSVNKACIDRVAGFKTELEKHPEMKILDVQEAQGTTEGARPVMRDLIGR 219 Query: 207 ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASV 266 ++ V+A ND +G I A+ A + ++DG KA+ G+ +++ Sbjct: 220 Y---PDLDAVFAINDPNALGVISALDSANK--LDQVTIVTVDGSQAGIKAIQAGKLHSTS 274 Query: 267 ELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 P G G EK + L + A++ LE + Sbjct: 275 AQFPREIGKIAAEKMLAHLKGEPVEKDVKVRVELITAENAEQYLEPQ 321 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 16/302 (5%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSF 75 ++A +GFSQ + WRA +EA K + L I DG+ + E Q+ V + Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + Q VDA+ ++P + G V+++A DA+IPVF+LDR+++ Y V DN L G+ Sbjct: 88 IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQ---YTQFVGGDNKLIGR 144 Query: 136 LIGDWLVKEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK-IIRSQSGDF 191 G++ V+ + GK N+VE+ G +G A DR GF E P IK ++ QSGD+ Sbjct: 145 AAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIKNLLDKQSGDW 204 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 + + +M + ++ I +VY HND M GA A K+AG + K+I ID +P Sbjct: 205 KQDQAYNIMATALRNNE---KIDLVYGHNDPMAYGAYLAAKDAGRE--KEIKFIGIDALP 259 Query: 252 -DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + + +GE A+ K+ K G EK + + A + + Sbjct: 260 NEGVTWVSNGELTATFL-YATPGAEGLRQAVKFLK-GEKVEKTVTLDTLKVTEENAAQIM 317 Query: 311 EK 312 + Sbjct: 318 KD 319 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 135/313 (43%), Gaps = 13/313 (4%) Query: 5 LLIVSAVSAAMSSMALAAP---LTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLKIAD 60 +L ++ + A ++ A +G + + + + + A++ + L D Sbjct: 51 VLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVD 110 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 ++ Q+ +++F+ Q VD I + PV +P+ + A I + L+R Sbjct: 111 AKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLPDG 170 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 + V ++ + G+ + +G N+ + G + AI R +G + K P Sbjct: 171 --VAYVGSEELRFGEEQAKYAASHSDG--GNIGIIMGMMTVEAAILRTQGVEDFFKEKPE 226 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IIR Q+ + RS+G VME++I N+G + ++ ++NDDM +GAIQA++ AG Sbjct: 227 YNIIRKQTALWQRSQGMVVMENWI---NSGDKLDIIISNNDDMALGAIQALRAAGK--LD 281 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 D + +D PD A+ +G +A+V + T +K+T + L Sbjct: 282 DTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAALSGINKTPRDKITWIPAEL 341 Query: 301 YLPDTAKEELEKK 313 D E K+ Sbjct: 342 VTKDNLAEFEAKQ 354 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 130/332 (39%), Gaps = 25/332 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAA----------------PLTVGFSQVGSESGWRAAETNV 44 M K + + + + MS +G G G+ A Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPV-GYFVAVREG 59 Query: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 A + + + +D Q+ V +++ VD I IA V + + ++ A +A Sbjct: 60 IDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEAN 119 Query: 105 IPVFLLDRSIDVKDKSLY---MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 IP+ +I K+ Y +T V + + GKL G+ + K VV ++G G Sbjct: 120 IPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVLIEGRPGT 179 Query: 162 SVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHND 221 S I+R+KG EA+ N +++ +Q+ ++ + + +++E I+ I ++ A +D Sbjct: 180 SPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQT---IDVIIAQDD 236 Query: 222 DMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALE 281 + IGA A+KEA LK IL + G + A+ G + + ++ G Sbjct: 237 NSAIGAGMALKEANLK--DKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAITAA 294 Query: 282 KYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 +G E +T K + + Sbjct: 295 VKYLNGEKVEPVTQMKQVEVNKSNVESFKGEW 326 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 138/312 (44%), Gaps = 14/312 (4%) Query: 1 MWK-RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M +L + S+++ + ++A A + + G+ + + A+ A+ +A + G+ + + Sbjct: 1 MKLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVL 60 Query: 60 DG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + ++QI V + +GV AI IA V++ A+ A IPV +D K Sbjct: 61 SPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDT----K 116 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + +T + DN K+ D++ V + +V LQG + S R G +K Sbjct: 117 GINKGVTFIGTDNKAGAKMAADFICDRV-SRGSDVAILQGIITQSTGKARADGAHAGLKG 175 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 + I+ Q ++ R++G+ VME+ + + V+A ND+M +GA++A+K+A + Sbjct: 176 C-GLNIVAEQPANWDRAQGRTVMENILTRNQ---KLKAVFASNDNMALGAVEALKDADM- 230 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 D++ D PD K+++ GE A++ G G + T Sbjct: 231 -LNDVIVVGFDANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSLPPVVDTG 289 Query: 298 STLYLPDTAKEE 309 + L A + Sbjct: 290 TLLVTKKNAADF 301 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 134/308 (43%), Gaps = 13/308 (4%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ--KQENQI 69 S+A ++ T+GF + + + N AK EAE +G+ +++ G Q + Q+ Sbjct: 60 SSAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQL 119 Query: 70 KAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY---MTTV 126 + + +A VD I + P + G E L + K+A IP+ LD + + + + Sbjct: 120 GIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFY 179 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 +N KL G+++ K K L+G G + A DR GF E + + ++ Sbjct: 180 GTNNYEGAKLAGEYVAKNFE-KGTKTAILKGIEGQTNAADRYNGFIEGAGDT--VTVVAE 236 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q+ ++ +G ++ I A ++ + + ND+M IGA++AIKEA ++ + I Sbjct: 237 QTANWEVDQGYTAAQNIISAN---PDVELFFCCNDNMGIGALRAIKEANMQ--EQIQIIG 291 Query: 247 IDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 D V + + +GE A+V P G DG E T + + D Sbjct: 292 FDAVSEALNLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAESYIDTGTEVITKDNV 351 Query: 307 KEELEKKK 314 E + K Sbjct: 352 GEFKDYLK 359 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 77/323 (23%), Positives = 131/323 (40%), Gaps = 25/323 (7%) Query: 1 MWKRLLIVSAVSAAMS--------------SMALAAPLTVGFSQVGSESGWRAAETNVAK 46 M K LL + +A +S S + + G + + + AK Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 47 SEAEKRGITLKIADGQQKQE--NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 E+ G+ + +++ E Q+ V + + + V A+ IA + V K+A DA+ Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 IPV D ++ S + + DN + G + G+ L K +NGK V + G + A Sbjct: 121 IPVVTFDSNVKGDITS---SFIATDNKVAGAMAGEQLAKLINGK-GKVAIVSHNPGTTTA 176 Query: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 I+R+ GF EA+ P+IKI+ +Q D +SK + I A +I +Y N+ + Sbjct: 177 IEREAGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINAN---PDIAGIYGTNEPSI 233 Query: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYK 284 G + ++E GL ++ ID D+ K + G + V P G Sbjct: 234 FGIAKGVEEKGLTG--KVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYKL 291 Query: 285 KDGTMPEKLTLTKSTLYLPDTAK 307 G EK T + L + Sbjct: 292 SKGEKVEKRIDTGAILVTKENIN 314 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 29/330 (8%) Query: 1 MWKRLLIVSAVSAAMSS-----------------MALAAPLTVGFSQVGSESGWRAAETN 43 M RL I A + + A+ T+G S + ++ + + Sbjct: 1 MKHRLFIALACLLTVFAGCNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGD 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 SE +KRG + G + Q ++ F+ + V AI ++P + PV++EA A Sbjct: 61 NIVSEGKKRGYDAVVVSGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAA 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 IPVF +D + T + DN GK +++ + + L A Sbjct: 121 GIPVFTVDI-PCHEPGVKIATQIATDNYGGGKEAAKAMIEALGEAGGKIAILHFKQ-AES 178 Query: 164 AIDRKKGFAEAIKNA-----PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 R KGF E I + I+ + +G + E ++A ++ ++A Sbjct: 179 CQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQAN---PDLHGIFA 235 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD 278 ND +GA A+++AG ++ DG P+ +A+ +G+ A P+ G Sbjct: 236 INDPAALGARAALEKAGKT--DQVVIVGFDGQPEGKQAIKEGKIYADPIQFPDKMGAQIV 293 Query: 279 ALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 + G L ++LY A++ Sbjct: 294 DAIIQQSKGETLPPQMLIPTSLYKKADAEK 323 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 130/321 (40%), Gaps = 16/321 (4%) Query: 1 MWKRLLIVSA---VSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITL 56 M L+V V +S +G SQ + WR A N + EA + + Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVEI 60 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 I D Q E QI+ +R + Q VD + I+P + V +EA A IP + DR ++ Sbjct: 61 IIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVNT 120 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 Y + V A+N G G++ + ++E+ G S A +R KGF +A++ Sbjct: 121 DQ---YTSFVGANNYEIGLAAGNYAANYLPPNAI-ILEIWGLTQTSPAQERHKGFVDALR 176 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 ++ R G + + ME ++ + + I VYAHND M I A + Sbjct: 177 EREDLSF-RKIEGQWLVDTAR--ME--LRKLEHPEQIDFVYAHNDMMAIAAREYFMAWDS 231 Query: 237 KPGKDILTGSIDGVPDI-YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 G+++ +D V +A+ DG NAS P + + G +K Sbjct: 232 IRGRELRIIGVDAVAGAGLEAVEDGRINASFL-YPTGGEQVIRTAMRIIQ-GEPVDKFIP 289 Query: 296 TKSTLYLPDTAKEELEKKKNM 316 ++ +A+ L + + Sbjct: 290 LRTAPVDHQSARTLLLQADQL 310 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 115/291 (39%), Gaps = 12/291 (4%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 GF+ + + A + ++ G L + D Q + QI V + Q Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQ 122 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G+D +F+ P+ + + L++ A +PV D + D L T + +DN G+L+ Sbjct: 123 GIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDV--YDVDLVNTIIVSDNYYAGELVA 180 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + ++K++ + V L + A I R+ GF + KI+ G + Sbjct: 181 EDMMKKL-PEGSKVCILT-SPSAEACIKRQNGFKDKADGY--FKIVSEIDGKGDTATSLG 236 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 + E ++ ++ YA ND IG +QA++ D+L +DG P +A+ Sbjct: 237 IAEDVLQGN---PDLGAFYAINDPSAIGCVQALESQKKT---DVLVYGVDGQPMGKQAIS 290 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +G A+ +P G A G EK L + L + E Sbjct: 291 EGTMEATAAQSPINIGKESVAAAYKILSGESVEKNILVPTFLIDKNNVTEY 341 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 127/306 (41%), Gaps = 15/306 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLKIADGQQ 63 L I + +S + + +GFSQ WR + K E G L AD Sbjct: 10 LFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGAKLVYADADN 69 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 QIK V+ + QG+D + I+P A ++++ IPV ++DR +LY Sbjct: 70 NSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRKTTS---NLYT 126 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN G + +L ++G P N++E+ G G+S I+R KGF + +K PN+KI Sbjct: 127 CYVGADNYQIGYMASQYLGNTISG-PANILEVMGLPGSSPTIERNKGFNDGLKKFPNLKI 185 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 GD+ + + + + +I +V+AHND+M A K+ G+ Sbjct: 186 KSQVYGDWMKPNAERQLSKI---SDQLNDIDVVFAHNDNMAFAAQSVFKKLGIAS--QAK 240 Query: 244 TGSIDGVPDI---YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 ID P + + +G +AS+ P A K D K + S + Sbjct: 241 FIGIDATPGAGGGLQMISNGLIDASML-YPTGGKEAITTAIK-IMDKIPFSKELILPSLV 298 Query: 301 YLPDTA 306 Sbjct: 299 IDSSNV 304 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 140/318 (44%), Gaps = 17/318 (5%) Query: 1 MWKRLLIVSAVSAAMSSMA-----LAAPLTVGFSQVGSESGWRAAETNVAKSEAE-KRGI 54 M + A + ++++++ A VG++ + + A N ++ + Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 + +D Q+ + +F+AQ V+AI + PV G P +++A A IPV L Sbjct: 61 EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIAL---- 116 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 ++ T V + NI G+L G+++ + + K ++ L+GT G S +RKKGF +A Sbjct: 117 GIQSAGGKYTFVGSKNIDAGRLQGEYMKEHL-PKGAKILYLEGTPGLSHTQERKKGFEDA 175 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + ++ + S S ++ R++G +V E +I++ + A ND M +GA++A++ A Sbjct: 176 LGR-SDVTTLASLSANYDRAEGMKVTEDWIQS---FPKFDAIVAANDQMALGALEALQGA 231 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 G ++ +DG D A+ G + ++ A + + K G Sbjct: 232 DRLKG--VMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEK 289 Query: 295 LTKSTLYLPDTAKEELEK 312 L D + +K Sbjct: 290 LVPFASITKDNVGQYAKK 307 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 126/288 (43%), Gaps = 11/288 (3%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 V ++ + + N +A+ G+ ++ D + QI + ++ AI Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKE 144 + + T P +++A++A IPV +++R ++ + +D+ G++ G+++ Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL----SDDREAGRMQGEFMASH 185 Query: 145 VNGKPCNVVELQGTVGASVAIDRKKGFAEA-IKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 + VV L G SVA+ R +GF EA + P++K++ S G +++++G + M + Sbjct: 186 L-PPNAKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLW 244 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 + I V A ND+M +GAIQA+K A G L +D P A+ GE + Sbjct: 245 LS---FFPEINGVVAANDEMALGAIQALKAANRLNG--CLVTGVDATPAGLAAVEAGELS 299 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 +V+ L + G P + T + + ++ Sbjct: 300 QTVKQDAEGQAAGAVTLVQGFLSGKAPTESLDIPFTSITRENVAQFVK 347 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 122/301 (40%), Gaps = 12/301 (3%) Query: 12 SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKA 71 SAA + + + A K +A++ G+ + + D + QI Sbjct: 26 SAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSSTQISQ 85 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 ++ +AQGVD I ++P + P ++ DA V +D I + DN Sbjct: 86 IQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAF---DNE 142 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 GKL + L K + G+ V+E QG GA AI R KGF + IK P IK+I + Sbjct: 143 KAGKLGAEALAKLM-GEKGTVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGR-DAQW 200 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG----KDILTGSI 247 T + A+++ I +++HND+MV G + + + I + Sbjct: 201 TADNALSLTVDNFTADSS---INGLFSHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGV 257 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 DG P + +G +A+++ P G + DG K+ LT + L + Sbjct: 258 DGTPLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKENVD 317 Query: 308 E 308 + Sbjct: 318 D 318 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 112/290 (38%), Gaps = 12/290 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 G++ + + + ++E EK G L D QI + + QGV Sbjct: 38 KKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQGV 97 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDW 140 +A+F+ PV G P L+ K A IP+ D + KD + V +DN GK+ GD Sbjct: 98 EAVFLNPVDWEGVRPGLEALKKANIPIINFDTEV--KDMNYVTAYVGSDNKNAGKVCGDD 155 Query: 141 LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVM 200 LVK + L + DR GF AI N I+ Q G ++ Sbjct: 156 LVKRY-PNGGKIAILNC-PTMNSINDRIAGFKSAI-EGKNFTIVAEQDGKGDLQTSMKLA 212 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD- 259 + +++ + +I + ND +GA+ A K A IL +DG PD K + Sbjct: 213 DDILQSHS---DIVAIMGGNDPTALGALAACKSA---KQSKILIYGVDGSPDAKKEIASG 266 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 G+ + +P G L + EK T ++ L D + Sbjct: 267 GQFVGTGAQSPKQIGVKSAELGYKVLNKQNVEKKTPVQTFLINKDNVSKY 316 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 153/326 (46%), Gaps = 23/326 (7%) Query: 1 MWKRL-----LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS-EAEKRGI 54 M +RL L + + A V FSQ + +RAA+ + + A + + Sbjct: 1 MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 L I+D QQ Q+ V +F+ Q D + +AP V+ +A +A+IPV L+R I Sbjct: 61 KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLV----KEVNGKPCNVVELQGTVGASVAIDRKKG 170 + Y + + +DN+ G+L G ++V K+ NVV ++G +G I+R +G Sbjct: 121 LQPN---YTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRG 177 Query: 171 FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 E + P IKI+ D+ ++K K+ M ++A+ I +VY HND M IGA Sbjct: 178 AKEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQ---PKIDVVYGHNDPMAIGAYLG 234 Query: 231 IKEAGLKPGKDILTGSIDGV---PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKD- 286 KE G + K+++ +DG+ K +MDG A+ P A + + ++ Sbjct: 235 AKELGRE--KEMIFVGVDGLGGPAGGIKKVMDGVLAATFV-YPLWVDKAVEIGTRILREP 291 Query: 287 GTMPEKLTLTKSTLYLPDTAKEELEK 312 G +P K + +S + + A + EK Sbjct: 292 GFVPAKDYVLESVMVTTENAPQMYEK 317 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 143/322 (44%), Gaps = 17/322 (5%) Query: 1 MWKRL-LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAK-SEAEKRGITLKI 58 M + L +++ + + S +G SQ E WR N S + +TLK Sbjct: 3 MKQWLYILIFTLLFSACSDNNVKKYVIGVSQCS-EDIWRDKLNNELVMSTYQHDNVTLKF 61 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 A Q + + F+ +GV+ + ++P V+ +A DA IPV L DR D K Sbjct: 62 ASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDSKK 121 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 Y + ADN G IG+++ ++++GK N+ E+ G +S AI+R +GF +A+K+ Sbjct: 122 ---YTAFIGADNYEAGYEIGNFIGQQLDGK-GNIAEICGLQASSPAIERNRGFMDALKDY 177 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 IK+I + GD+ + G M+S + I V+A ND M +GA+Q+IK Sbjct: 178 SGIKVIARKHGDWVKESGVMAMDSVLSQAKEP--IQYVFAQNDRMALGALQSIK---KHK 232 Query: 239 GKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 K I ID +P + + DG AS + P G + L + ++ Sbjct: 233 VKGIRIVGIDALPVPGGGMENVRDGNLEAS-YIYPTR-GDSVMQLALNILEKKPYKRDNY 290 Query: 296 TKSTLYLPDTAKEELEKKKNMG 317 K L A L + + M Sbjct: 291 LKGALVTKANANVLLMQNEEMN 312 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 12/290 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 S ALA +T+G S + + + + A+ G+ L ++ Q QI V F Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + +GVDAI ++PV + G + +AK A IPV +D S + + V DN G+ Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVE---VDAHVATDNYYGGR 137 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 + G+ + K +NGK V + DR GF EA+ P I+I+ Q G TR + Sbjct: 138 IAGETMAKVLNGK-GQVAIIDY-PVVQSVRDRVAGFKEAVSKYPGIEIVAIQPG-ITRPE 194 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 ++ ++A + ++ DD + ++ A+K AG++ D+ DG+ + Sbjct: 195 ALNTAQNILQAH---PEVDGIFGFGDDAALASVVAVKSAGME--DDVKVIGFDGMEEARN 249 Query: 256 AMMDGE-ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 A+ E A V P G G EK L+ + Sbjct: 250 AVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKE 299 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 135/314 (42%), Gaps = 16/314 (5%) Query: 1 MWKRLLIVSAVSAAM----SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 M K+ + S ++A + S+ LA+ + ++ + A A ++A++ G Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDT 60 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 +A Q + + + +A+ A+ + A L+ K A IP FL DR I+ Sbjct: 61 LVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN- 119 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + +T + ++N +L G+ + + G VEL G + A R +GF + + Sbjct: 120 -KTGIAVTQIVSNNFQGAQLAGEKFAELM-GDGGEYVELLGPESDTNAQVRSEGFHDILD 177 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 N P K++ QS ++++++ MES ++A NI V ND M +GA A++ AG Sbjct: 178 NFPEFKMVARQSANWSQTEAFSRMESILQAN---PNIKGVITGNDSMALGAEAALQAAGR 234 Query: 237 KPGKDILTGSIDGVPDIYKAMMDG-EANASVELTPNMAGP-AFDALEKYKKDGTM-PEKL 293 KD+ DG+ + +++ G A++ + + Y + G+ + Sbjct: 235 ---KDVFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTGLPEK 291 Query: 294 TLTKSTLYLPDTAK 307 L L AK Sbjct: 292 QLMDCVLIDSSNAK 305 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 142/313 (45%), Gaps = 15/313 (4%) Query: 1 MWKRLLIVSAVSAAMSS-MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M K ++ +A++ MSS +A A + FS + A A++ G+ L++ Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q Q+ + + + +G ++P + E +DA++PV LDRS+ K Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 + A+N G+ IGD++ ++V L G G+S I+R +G +++K Sbjct: 121 ---VPHFGANNYKGGQAIGDFVKARF-PNGADIVLLTGQPGSSSNIERTQGIRDSLKAGG 176 Query: 180 -NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 +++ Q+G++ RS+G ++ES + + + + + NDDM +GAI+A++ GLKP Sbjct: 177 SKYRLVADQTGNWMRSEGMRIVESVLPSLPKRPQV--ILSANDDMALGAIEALQSQGLKP 234 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT---L 295 G+ ++ D VP+ + DG A+ + P G A + + Sbjct: 235 GE-VMVTGFDAVPEALARVRDGWLAATADQRP---GYAVTQAMTQLTNNIRTKSAITGAD 290 Query: 296 TKSTLYLPDTAKE 308 T+ D + Sbjct: 291 YPPTMITKDNLND 303 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 5/307 (1%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 L + S A SS A +G + + A T+ K A+++G+ L I D ++ Sbjct: 21 LTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKKD 80 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 +++ V + + VDA+ + P+ + K A IP+F+L Y + Sbjct: 81 VGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKS 140 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + D+ + G++ ++L ++ N+V G GAS RK GF + I N KI+ Sbjct: 141 YIGVDDTVAGQMQAEYL-NKLMPNGGNLVFAAGVYGASWTDRRKNGFDKTINE--NFKIV 197 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 +R K ME ++ +G I V A+ND+M IGA AI +AG Sbjct: 198 AEFQAKGSRDDAKRNMEDTLQRFPSG-QIDAVVANNDEMAIGAASAIADAGRTAEFK-AV 255 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 +DG + + G +A+V G + +G + TL D Sbjct: 256 VGVDGTEPALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTLPFTLITKD 315 Query: 305 TAKEELE 311 E L+ Sbjct: 316 NLSEFLK 322 >UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y2_9CLOT Length = 341 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 106/297 (35%), Positives = 154/297 (51%), Gaps = 12/297 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 VG SQ+GSES WR A T ++ +++ G L + +QKQENQIKA+RSF++Q VD I Sbjct: 47 VVGVSQIGSESVWRTANTASIQNTFSKENGYFLIFDNARQKQENQIKALRSFISQQVDYI 106 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 +P+V GW+ VL+EAKDA IPV L+DR + VKD+SLY V +D EG+ G WL Sbjct: 107 VFSPIVEDGWDTVLQEAKDAGIPVILMDRKVKVKDESLYTAWVGSDFAEEGQNAGRWLAG 166 Query: 144 EVN-----GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + G+ N+V LQGT G++ I R +GF N I+ DFT +KG+E Sbjct: 167 HLKEEGRAGEEINIVVLQGTNGSTSVIGRTEGFDSVAAQHDNWNILEQADADFTTAKGRE 226 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD--ILTGSIDGVPDIYKA 256 M+ + +I +V + NDDM GA++AI EAG G D I+ S D + Sbjct: 227 EMKKMLHKYE---DIDVVVSQNDDMTFGALEAIGEAGQSTGTDGGIILISFDATKSALEK 283 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + G N +E P + + + + G EK ++ + + Sbjct: 284 VEQGIINVDIECNPEQGAY-IEEVIRVLESGGQAEKEYFVSERVFTKKNVASVIGDR 339 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 14/299 (4%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRS 74 ++ +A AA L +GFSQV +S + A++ A+ G L D Q ++ Sbjct: 25 LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + + VD + I PV +P + A+ +PV +DRSI+ + DN+ G Sbjct: 85 LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSING---GGVTAHLGRDNVKMG 141 Query: 135 KLIGDWLVKEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 K +GD ++ E+ K V+E+QG G +V R+ GF +A+K KI+ ++ Sbjct: 142 KAVGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALK-GSGFKIVAGPYAEY 200 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 TR+ M+ ++A ++ +VYAHNDDM +GA++ + EAG KD+ +DG+ Sbjct: 201 TRANAVTAMQDLLQAH---PDVKVVYAHNDDMAMGALKVLAEAGK---KDVFVAGVDGLS 254 Query: 252 DIYKAMMDGEAN-ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + +M G+ A+ P G + K G + E Sbjct: 255 EALASMAGGDQYVATALNDPRYLGDMTVQTARAIKAGKKVPAFVDAGTKAVTKANVGEF 313 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 23/327 (7%) Query: 1 MWKR----LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAK-SEAEKRGIT 55 M K L + + + + +G SQ E WR + + + G+T Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCS-EDIWRDKLNQELQTATYMEDGVT 59 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 ++ A + QI+ + F+ GVD + I+P A PV+ +A + IPV L DR D Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 K Y + ADN+ G+ +GD++ ++++ NV+EL G G+S AI+R +GF E I Sbjct: 120 GK----YTAFIGADNVEVGRQMGDYVARQLDY-HGNVIELMGLKGSSPAIERHRGFIERI 174 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGK--NICMVYAHNDDMVIGAIQAIKE 233 P IK++ S GD+T++ G+ +++F + I V+A ND M +GA +E Sbjct: 175 SRYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAMGA----RE 230 Query: 234 AGLKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP 290 AGL K L +D +P K + D +AS + P + Sbjct: 231 AGL-LPKSTLFCGVDALPGEQGGMKLVADSVLSAS-YIYPTRGDLVMKLAMNIL-NHRPY 287 Query: 291 EKLTLTKSTLYLPDTAKEELEKKKNMG 317 +K L +S L PD A L + M Sbjct: 288 QKENLLQSALVTPDKAPLMLMQADEMN 314 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 84/316 (26%), Positives = 136/316 (43%), Gaps = 17/316 (5%) Query: 1 MWKRLLIVSAVSAAMSSMAL-----AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT 55 M +R ++++V+A +A LT+ S + N K+EA+ +G+ Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVN 80 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 L +DGQ Q + + + Q V+AI I+P+ P ++EA A +PV +DR +D Sbjct: 81 LTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVD 140 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + V ADN+ G+ +V + LQG GA AIDR KG + Sbjct: 141 G--VQGILAHVGADNVKGGEAEASAMVAAF-PNGAKLFHLQGQPGAGPAIDRNKGVHNVL 197 Query: 176 KNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + +II Q+ +F R++ V E+ + A + NDDM +GA++A Sbjct: 198 DPLKDKYQIIFEQTANFARAEALSVTEAGLAANGKP---DAIICANDDMALGALEACAAR 254 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMP-EK 292 D+ D +P+ A+ DG+ +VE P A Y K+ T P EK Sbjct: 255 NFT---DVKIYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEK 311 Query: 293 LTLTKSTLYLPDTAKE 308 L L + D + Sbjct: 312 LVLLTPIVIGKDNLDK 327 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 131/297 (44%), Gaps = 15/297 (5%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIADGQQ--KQENQIK 70 ++ A TVG + + A++ AE+RG L Q E+QI Sbjct: 54 SVGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQIN 113 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---KDKSLYMTTVT 127 AV +F+ QGVDAI +AP + L+ A +A I V D ++D + + + + V Sbjct: 114 AVENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVG 173 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 DN + ++ G+ L + + G+ VV ++G GA A R+ GF +AI ++++ S+ Sbjct: 174 PDNRMGAEMAGNALGEAL-GEGGRVVIIEGNPGADNATQRRLGFEDAIATH-GLELLESR 231 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 + + + +V + + A ++ V A ND M IG I+A+ AG DIL Sbjct: 232 TAHWETEEANQVFAAMLTAH---PDLQGVMAANDSMAIGVIEALDAAGR---DDILVVGF 285 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLP 303 D VP + + DG A+V+ A D + + G E T L Sbjct: 286 DAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPIELVTA 342 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 122/304 (40%), Gaps = 15/304 (4%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSF 75 + +GFSQ + WR A + + E A L D Q+K + Sbjct: 18 AGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIEEL 77 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + G+ + ++P + PV+++A +PV ++DR Y V DN GK Sbjct: 78 LRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSP---YYTAYVGGDNYQVGK 134 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 +G++ + G ++E+ G +S A DR +G +A+ P+I+ + + +G + + Sbjct: 135 TVGEYAAALLGG-NGKMIEITGLPRSSPASDRHRGLVDALATRPSIRRVATLNGQWQKDI 193 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI-- 253 K + + ++ +++A N+ M +GA + + + P + I +DG+P Sbjct: 194 AKSELRKVL---PRFPDLDLIFAQNEVMAMGAREVCND--IFPDRKIRVIGVDGLPGQFG 248 Query: 254 -YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + + DG A+ P A + +K L ++ + + + Sbjct: 249 DIQMVYDGHITATAL-YPTGGEEAARVAMNILQ-KQPYQKENLLQTAIIDSSNVRMIKMQ 306 Query: 313 KKNM 316 M Sbjct: 307 TDKM 310 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 84/304 (27%), Positives = 140/304 (46%), Gaps = 19/304 (6%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSF 75 T+G SQ E WR + + A + LK A E Q++ + S Sbjct: 18 CSQGGKRYTIGVSQCS-EDIWREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSL 76 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + +G+D + +AP P + A D IPV + +R Y ++ADN G Sbjct: 77 MNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGS---QKYTAFISADNYEMGH 133 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 ++G+++V ++GK NV+E++G G+S AI+R GF +AIK+ P IK++ S GD+T + Sbjct: 134 VMGEYIVSRLHGK-GNVLEIKGLAGSSPAIERHNGFMDAIKDEPGIKVVGSLQGDWTEAT 192 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP---D 252 + + ++ A + +V+ ND +GA +A+ G+ L IDG+P Sbjct: 193 ACQKSKEWLAANEGVP-VDLVFGANDRTAMGAREAL-------GEKPLYCGIDGLPGKNG 244 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + + D +AS + P D + +G EK T+ S L D AK L + Sbjct: 245 GIQLVRDSLLDASF-IYPTHGDQLMDLAIRIL-EGQPYEKETMLMSALVTHDNAKVLLMQ 302 Query: 313 KKNM 316 + M Sbjct: 303 GEEM 306 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 121/313 (38%), Gaps = 16/313 (5%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-----GITLKIA 59 L +S+ S A T+ G+ + A + + L Sbjct: 9 LTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIWK 68 Query: 60 DG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + ++ QI+ V +F+ + V + +AP+ + A A+IPV + D ++ Sbjct: 69 GPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKTD 128 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK- 176 Y++ V DN G+L + + + + GK NV+ L+ VG++ +R+ GF + +K Sbjct: 129 K---YVSFVATDNYKGGQLAAERMGQLLEGK-GNVILLRYAVGSASTEEREAGFMDTLKS 184 Query: 177 NAPNIKIIRS-QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 PNIK+I S Q TR + ++ + G + ++ + + +A+++ G Sbjct: 185 KFPNIKVISSDQHAGATRETAYQASQNLL--NRFGHEVNGIFCPCEPPTVAMAKALRDIG 242 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 GK + D + +G+ V P G G EK Sbjct: 243 KAGGK-VKMVGFDAGSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQGEKVEKRID 301 Query: 296 TKSTLYLPDTAKE 308 T + P+ ++ Sbjct: 302 TGVQIVTPENMEQ 314 >UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D949_9CLOT Length = 352 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 5/289 (1%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 L GF+ + W + G + + QI V +AQG+D + Sbjct: 64 LKAGFAACHYTNDWNITNCETVCEDLRSVGFEVVWNEANNDTATQIANVEDLLAQGIDLL 123 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 I P G P L+ +DA +PV LDR + D SLY+T + DN+ G+ +G WLV Sbjct: 124 VIKPKEEEGLIPALEACRDAGVPVICLDRKV--SDPSLYVTAIMTDNVAGGETVGQWLVD 181 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 C +VE+ GT G++ I+R KG + I I+II SQ GD RS+ + V E+ Sbjct: 182 HY-PDGCKIVEIVGTAGSTGQIERSKGLSNVIDKYDQIQIISSQVGDNMRSEAQTVTENM 240 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI-DGVPDIYKAMMDGEA 262 I+A + I ++ ND+M +G +QA+ G++PG++I +I DG ++ + + DG Sbjct: 241 IQAYGK-EGIDVIVTQNDEMAMGCLQALWGLGIEPGQEITICTIGDGNSEVVEQVKDGTV 299 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 E TP + + K EK + + + + A +EL Sbjct: 300 GCVYESTPYLGPQVLEVAHKIFVTKEDVEKYIPSANRFFTIENADQELP 348 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 13/292 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 S+ + TVG S + + + + + KSE K G +++ G+ Q V+ F Sbjct: 43 STKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQVKDF 102 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + G AI + P + G P ++EA A IPVF D + + ++ + DN+ GK Sbjct: 103 IVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAP-GAEVVSHIATDNLGGGK 161 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN------IKIIRSQSG 189 + +++ V VV L A I R +GF E I + I I+ G Sbjct: 162 QAAEAMIEAVGSAGGKVVILDFKA-AESCILRVQGFKEVIDKHNSENPSSAITIVSELPG 220 Query: 190 DFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDG 249 D + K + E ++A ++ ++A ND +GA A+++A + DG Sbjct: 221 DGQKDKSYKAAEDALQAH---PDLAGIFAINDPSALGARAALEKANKA--DQVKIVGFDG 275 Query: 250 VPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLY 301 PD +A+ +G+ A P+ G A G K L + LY Sbjct: 276 QPDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKEQLIPTGLY 327 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 15/316 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQ 63 L + + A S +G SQ WR + + EA I L + D Q Sbjct: 10 LWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEIELVVMDASQ 69 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 + QI ++ F+ + VD + I+ PV EA A IP +LDR I+ + Y Sbjct: 70 DNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKINSDE---YT 126 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 T + ADN G+ IG ++ + G+ ++E+ G G+S A +R +GF +A+ PN+KI Sbjct: 127 TYIGADNYEIGRSIGMYISSLIKGET-TILEIWGRRGSSSATERHQGFVDAMSIDPNVKI 185 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 R G + + E + ++ +++ +V+AHND M +GA +AI+E + Sbjct: 186 -RELDGYWYKENAYEEV----LKLDSIEDVDIVFAHNDMMALGAREAIEERDSSLVGHVE 240 Query: 244 TGSID---GVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 +D G +A+ G+ +AS P G A + G K + + Sbjct: 241 FIGVDGLLGGGLGVEAVAQGKLDASF-YYPTGGGVAIKVAWQILS-GQAYTKKYALSTAM 298 Query: 301 YLPDTAKEELEKKKNM 316 A + + Sbjct: 299 IDKTNAGTLYLQSDRL 314 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 136/313 (43%), Gaps = 7/313 (2%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 K+++++ ++S A + VG S + + + A++ +TL+ D Sbjct: 1 MKKIILLCLTLLSLSPSVFA--IQVGVSIAQMDDVFLSRLRGYLIEHAKQYPDMTLQFED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 GQ + Q+ V+SF+ VD I + PV G + + A+ A++P+ L+R Sbjct: 59 GQGAVDKQLSQVQSFINGKVDVIIVNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKMG 118 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNG-KPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ + +D I G+L +L V K N+ ++G + R +G E I P Sbjct: 119 DGISYIGSDEIEAGRLQMGYLADMVKDRKNVNIAIMKGLLSNDATRFRTQGAKEVIAKHP 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 N+ ++ + + R G +M ++I G+ I ++ A+ D+M IGA AIK GL G Sbjct: 179 NMHVVMEDTAKWMREDGMNLMNNWI---LTGQKIDILSANADEMAIGAAMAIKSNGLNIG 235 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 KDIL G DG P+ +A+ G +V + + G + + Sbjct: 236 KDILVGGTDGGPNGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKDINFIPFQ 295 Query: 300 LYLPDTAKEELEK 312 L P ++ + Sbjct: 296 LVTPQNYQKFITN 308 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 239 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 137/321 (42%), Gaps = 15/321 (4%) Query: 1 MWKRLLIVSAVSAAMS-SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M KRL+ + +S S++ A PL +GF+ + T K A+++G TL Sbjct: 1 MKKRLIGLLLAGVTISMSVSAAEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLITT 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D + QI V ++QG++ + + P + + AK A +P +LD I ++ Sbjct: 61 DARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALEAP 120 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 +T V A+N LIG++ V + KP N + L G G V R+ F + A Sbjct: 121 --VITRVQANNAKNNNLIGEYAVGQFGDKPMNCIFLSGNQGNLVGQARRDNFLLGVAEAQ 178 Query: 180 -------NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 N+ + G++ + G + ME I A G I VY+ DDM +GAI+A+K Sbjct: 179 LRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVA--QGDKINCVYSEMDDMALGAIRALK 236 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALE-KYKKDGTMPE 291 A ++ + DG +A+ GE A+ P++ + +Y+ T Sbjct: 237 AANK--LDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQAGQTSFP 294 Query: 292 KLTLTKSTLYLPDTAKEELEK 312 S L D + ++ Sbjct: 295 DYVYIPSILITKDNVDKYYKE 315 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 22 APLTVGFSQVGSE-SGWRAAETNVAKSEAEKRGIT-LKIADGQQKQENQIKAVRSFVAQG 79 + L VGFSQ S + +RA ET + A+ + L + Q Q+ V + + QG Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI-LEGKLIG 138 A+ IAP+ +TG +P +A IP+ LDR S Y++ + ++ +G++ Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLSFLGSNFYFKQGEIDA 173 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 L K G V E+QG G SV + R KGFA +K P +KI+ Q+G++ + ++ Sbjct: 174 RELAKATGG-HAMVAEIQGAYGNSVEVARTKGFAAGLKAYPGMKIVTEQTGNWFTTDAQK 232 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 VM + A N+ VYA D M GAI A+++AG KPG + SIDG + ++ Sbjct: 233 VMSQILLAH---PNVNAVYAQADTMAFGAITALRDAGKKPG-QVKIVSIDGTRQGVQDIV 288 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 DG A E P AF L+ + DG + + +Y P Sbjct: 289 DGWIYADDETNPRFGPIAFHELQNWF-DGKPVPRHIVLTDHIYTP 332 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 + A +T+G + ++ + +EA+K+GI + ++D + Q+ ++ F Sbjct: 33 AKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSDARGDAATQVNQIQDF 92 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 +++ V AI P AT +K A A+IPV +DR+ + + + +D++ + Sbjct: 93 ISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGK---SFIASDSVAAAR 149 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 +G+++VKE GK + LQG +G + +DR+KGF +A+KNAP IK++ Q D+ + K Sbjct: 150 TLGNYVVKESGGK-GQLAILQGQIGTTPQVDRQKGFGQALKNAPGIKVVSQQPADWAQDK 208 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 V + ++A I +++ D M +GA QA+K +G K K L DG K Sbjct: 209 AYSVSQDMLQAH---PGIDILWGQADAMALGAAQAVKASGSK--KKHLIVGFDGDIAGLK 263 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 A+ G +A++ G G L + L Sbjct: 264 AVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPAQQLQPAFLLT 310 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 113/288 (39%), Gaps = 19/288 (6%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRG---ITLKIADGQQKQENQIKAVRSFVAQGVDA 82 VG + + + A+ EA+K G + + + Q + +FVA D Sbjct: 62 VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I + G P + +A+ A V +D +I+ TVT +N+ G++ ++ Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAIEAD----IDATVTTNNVQAGEISCQYIA 177 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR-SQSGDFTRSKGKEVME 201 + GK NVV + G SV I R G + + P+IK++ Q+ + +R G VM Sbjct: 178 DRLKGK-GNVVIVNGPPVTSV-IQRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVMS 235 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + I V+A ND +G A +A +D +DG P+ +A+ G+ Sbjct: 236 DLL---VTFPKIDAVFAINDPSGVGVDLAANQAKR---QDFFIVGVDGAPEAIEAIASGD 289 Query: 262 --ANASVELTPNMAGPAFDALEKYKKDGTMPE-KLTLTKSTLYLPDTA 306 A+ P + G PE L + L + Sbjct: 290 SLYAATATQNPRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKENV 337 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 13/299 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQG 79 + T+GF + + + N + GI +I G E Q+ + ++V+QG Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---KDKSLYMTTVTADNILEGKL 136 VD I + P + G L+E + A IPV LD +D K + DN + G+L Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 +G+ + ++ C L+G G + DR GF + K + ++ Q ++ +G Sbjct: 199 VGEEVA-QMYPDGCKTAILRGVQGQTNDDDRYNGFLD--KAGDVVDLVAEQHANWETDQG 255 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 +++ I+A K++ ++Y ND M IGA QA+ EAGL I S DGV + + Sbjct: 256 YTAIQNIIQAN---KDLQVIYCENDLMGIGAYQAVDEAGLT--DQIKIFSYDGVTEGLQY 310 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKN 315 ++DG+ ++ P G A G E T L + AK+ LE+ K Sbjct: 311 VVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSENAKQTLEETKK 369 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 178/324 (54%), Gaps = 20/324 (6%) Query: 5 LLIVSAVSAAMSSMALA-------------APLTVGFSQVGSESGWRAAETNVAKSEAEK 51 LL++ ++ +S A + + + + Q+G+ES WR A T K A Sbjct: 14 LLVIVGLAGCGASSAPTTAPDAPATGAKTYSDMVLCYPQLGAESDWRTANTASIKETAAT 73 Query: 52 RGIT-LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 GI L +D QQKQENQI AVR+ + QGVD I + PVV GW+ VL EAK+A IPV ++ Sbjct: 74 LGIKQLVFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIPVIIV 133 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 170 DRS+ DKSLY T + ++ +LEG+ ++ ++EL GT G+ A+ R KG Sbjct: 134 DRSVSA-DKSLYSTHIGSNMVLEGERAAAEF-NKMMPNGGAILELSGTTGSGAAVGRAKG 191 Query: 171 FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQA 230 + NI II SQ+G+FTR++ VM++ +K G + ++ HNDDM IG I+ Sbjct: 192 LRNKL--NSNITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFIHNDDMGIGVIEV 249 Query: 231 IKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP 290 +K AG+KPG D+ S+DG ++AM+DG A VE P + F+ K +G Sbjct: 250 LKAAGIKPG-DLKIVSVDGTRGGFQAMVDGWFQADVECNPLLGPQVFELALK-LMNGQPV 307 Query: 291 EKLTLTKSTLYLPDTAKEELEKKK 314 E +T T+Y P+ A E L +K Sbjct: 308 EPEVITNETVYYPENAAELLPTRK 331 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 77/323 (23%), Positives = 145/323 (44%), Gaps = 20/323 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALA---APLTVGFSQVGSESGWRAAETNVA-KSEAEKRGITL 56 M + +I+ +S +M + A + +G SQ WR N +++ + + + L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCC-GGVWREKVNNEMRQAQYQYKNVDL 59 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + + Q + + S +A+ VD I +AP P ++ A A IPV L DR + Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 Y ++ DN+ G+ + +L +++GK VVE+ G AS I+R +GF E +K Sbjct: 120 P---HYTASIGGDNVEAGREVARFLASKLDGK-GTVVEITGLKDASPVIERHRGFHEVMK 175 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 N P IK++ + ++ + +E+M+ ++ + G + V+ H+D IGA ++ Sbjct: 176 NYPGIKVV-TLESNWKLERAQELMKQYL---DKGGHADGVFGHSDLGAIGAF--LEAERR 229 Query: 237 KPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 K +L IDG+P + + G+ AS P + + G +K Sbjct: 230 GIDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYV-YPTQGEKIMELAMNILQ-GKPYKKD 287 Query: 294 TLTKSTLYLPDTAKEELEKKKNM 316 + KS L P+ + +++ Sbjct: 288 NVMKSFLATPENCDAIALQYQDL 310 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 30/330 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALA-----------------APLTVGFSQVGSESGWRAAETN 43 M KR L S+A + V FS S + A Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 + +A++ G + D Q E QI ++S V +GVDAI +AP+ P L +A Sbjct: 61 GFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEA 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 +PVF +DR + + ++T+ DN+ G+ + + LVK+ G+ +V+ +QG + + Sbjct: 121 GVPVFCVDRRGEGE----VVSTLETDNVKAGEAMAEQLVKDY-GEDVDVLIIQGVLSDTP 175 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQS-GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDD 222 +DR +G ++ NI I+ S G+++ ++F++ ++ +++ D Sbjct: 176 TLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETN---PDLDVIFTCTDA 232 Query: 223 MVIGAIQAIKEAGLKPG----KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD 278 +V G + A+KEAG + S+DG ++ K + DG + + P G Sbjct: 233 LVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQFGIDTV 292 Query: 279 ALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 K DG E+ + + + Sbjct: 293 KSMKTYLDGGKVEEKVYYNGDVVTDENIDK 322 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 13/299 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEK--RGITLKIADGQQKQENQIKAVR 73 +S ++ + + + + + +A+ G+ + + D + Q+ V+ Sbjct: 46 ASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQ 105 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + VD I I+P + VL A++A IPV + D D Y++ ++ DN Sbjct: 106 DAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDI---GTDSGEYVSFISTDNSGG 162 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR 193 K +G+++ ++N K + ++ + RK+GF E IK ++ Q R Sbjct: 163 AKKLGEYVADKLN-KGDEIAQIALNQARKNGVLRKEGFEEGIKEKLK-EVDFRQMEKVNR 220 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 +G + I + N+ ++ H++D +GA+ A+KE D P++ Sbjct: 221 DEGVRYTQDLITSY---PNLKCIFCHSEDPSMGAVTALKEIN---NDKCKIVGFDCSPEV 274 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 +A+ G+ A+ P G K DG PEK + L D + +K Sbjct: 275 VEAIKSGDILATAAQQPVFMGRTAVDCLKTHLDGGTPEKEISVDTLLVTQDNINDVYDK 333 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 13/294 (4%) Query: 3 KRLLIVSAVSAAMSSMALAAPL-TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG 61 K + SA+ +A+ ++A AA + + + + A+ A+++ I L + Sbjct: 7 KNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVA 66 Query: 62 Q-QKQENQ-IKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV--- 116 + + Q + V + +A+ VDAI + P + + P ++A+ A IP+ LD +D Sbjct: 67 EKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAA 126 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + L V DN G L L + + GK NV L+G G RK G +A Sbjct: 127 EAAGLKFNYVGVDNFNGGYLEAKNLAEAI-GKKGNVAILEGIPGVDNGEQRKGGALKAFA 185 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P+IKI+ SQS ++ + V + + A NI ++A ND+M IGA+ A++ AGL Sbjct: 186 EYPDIKIVASQSANWETEQALTVTTNILTAN---PNINGIFAANDNMAIGAVTAVENAGL 242 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMA-GPAFDALEKYKKDGTM 289 +L DG+P + + G+ +++ P A + K + Sbjct: 243 AG--KVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 126/306 (41%), Gaps = 11/306 (3%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ-Q 63 + + ++ + + + A++ A K G L + + Sbjct: 28 VFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEEF 87 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 Q + + V DAI IAP T ++ A + +IPV L+D +I+ ++ +L Sbjct: 88 SPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIAL-- 145 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 +++DN+ G++ G+ L +++ GK V+ + G S RK+GF EAIK P+I+ Sbjct: 146 ARISSDNVEGGRMAGEALAEQIGGK-GKVLLISVKPGISTTDQRKQGFEEAIKQYPDIEY 204 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 + ++ + ++ + S ++A ++ ++ N GA +++AG + + Sbjct: 205 LGTEYCNDDPTQAASITTSTLQAH---PDLAGIFGANVFSGQGAGTGVRQAGKR--DQVS 259 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPE-KLTLTKSTLY 301 + D P + + G + + PN G +Y + G PE K T T Sbjct: 260 VVAFDASPTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGFTTV 319 Query: 302 LPDTAK 307 D Sbjct: 320 TRDNLD 325 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 12/304 (3%) Query: 1 MWKRLLIVSAVSA-----AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGI 54 M K++L + A +A A+ A +T+G++QVG ES WR A T + +E+ G Sbjct: 38 MNKKVLGMLACTAVAASMAVGVSAEGDLITIGYAQVGHESDWRTANTKNYEDVFSEENGY 97 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 L + D Q++AVR+F+ QG+D I IAP+ + GW+ VL+EA+DA IPV + DR I Sbjct: 98 ELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADREI 157 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 + D S+Y V EG G+WL ++++G +++++G+VGAS AI R GFAE Sbjct: 158 EA-DASMYDAWVGTAPYDEGVTAGNWLAEQLDGAEAKILQIEGSVGASAAIGRTDGFAEV 216 Query: 175 IKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 + +++ SQSGDFT+ G+ VMESFIK +V ND+ GA+ A+ A Sbjct: 217 MAEHSEWELLDSQSGDFTQDGGQAVMESFIKTYEG--QFNVVVCQNDNEAYGAMDAMDAA 274 Query: 235 GLK--PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 G+ G D++ S D D + +DG+ N VE P + + + + G E Sbjct: 275 GITYGVGGDVILISYDATHDGLQYTLDGKINLDVECNP-IQAETVKGVIEQMEAGEDFEA 333 Query: 293 LTLT 296 TL Sbjct: 334 TTLI 337 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 12/289 (4%) Query: 27 GFSQVGSESGWRAAETNVAKSEAEKRGIT---LKIADGQQKQENQIKAVRSFVAQGVDAI 83 + + ++ + EAE+ G T KI DG+ Q+ + V GVD I Sbjct: 2 ALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGI 61 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 I PV G +K+A+ + V +L++ I D++ T V ADN G + +++ Sbjct: 62 IIEPVSTDGIVKAVKDAEKVGVKVVILNQRI--SDQNAADTFVGADNESTGAALMKKVME 119 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 +++GK N+VEL G +G+ + R KGF + P++K+I S S D+ +K + E++ Sbjct: 120 DLDGK-GNIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENW 178 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 + + +I V A ND M +GA QAIKEAGL I +D D A+++G Sbjct: 179 LTS----SDIQAVVAQNDGMAVGAAQAIKEAGLT--DKIKVYGVDATSDGLNAIVNGGMT 232 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 +V G L G K + + +Y + E L+K Sbjct: 233 GTVSQGTENQGKISADLCSNLIYGQSVPKEVIATNVVYTKENVNEILKK 281 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 14/303 (4%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL--KIADGQQKQENQIKAVR 73 P V ++ + + N K E+ + D +Q QI V Sbjct: 59 PGGTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVE 118 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + + G AI V A EP+++ K+A +P+ +R + D + V AD + Sbjct: 119 NQILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFENCD-----SFVGADGAVA 173 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFT 192 G L+ + ++ GK NV + G +G R+ E + P+++++ +GD+ Sbjct: 174 GSLLARFTGEKTGGK-GNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWK 232 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R K +++E+++++ G +I + NDDM +G A+++AG DI+ ++G PD Sbjct: 233 RDKALQLVETWLQS---GTDIDAILCLNDDMAMGTQLAVEQAGKS--DDIIVCGVNGDPD 287 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 A+ DG+ A+V P+ G PE + L D + ++ Sbjct: 288 GINAVRDGKIAATVFQNPDRQAEEALEAALQYIHGEKPESKIMIPFELVTADNVDDYVQY 347 Query: 313 KKN 315 + Sbjct: 348 SQK 350 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 185/308 (60%), Gaps = 15/308 (4%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 + +T+G+SQ+G++S WRAA T K AE GI L+ ++ + KQENQI+A+RSF+AQ Sbjct: 37 SGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAIRSFIAQ 96 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 VD I +P+VATGW+ VLKEAK A+IPV ++DR + D SLY+ + D++ EG+ Sbjct: 97 KVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTNDDSLYIMRIGTDSVREGREAF 156 Query: 139 DWLVKEV---------NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN---IKIIRS 186 WL + G N+ E++G G+SV R GF +A+ +PN +I+ + Sbjct: 157 RWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNKDAYEILVA 216 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q+ F + GK+VM +K I +++A NDDM +GAI+AI+ AGLKPG+DI+ S Sbjct: 217 QNSTFQKDGGKQVMTEMLKNYK--DKIDILFAQNDDMALGAIEAIEAAGLKPGQDIVIVS 274 Query: 247 IDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 DG I++AM+DG++N +VE P + GP + K G E+ K ++Y + A Sbjct: 275 CDGTRAIFQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFVKDSVYPAEIA 333 Query: 307 KEELEKKK 314 ++++K Sbjct: 334 PMAIQERK 341 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 28/323 (8%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAE----TNVAKSEAEKRGITL 56 M K L+ + + +S VG + ++ GW K A + Sbjct: 1 MKKVLIFLLLIVTILSFA----KFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDVEF 56 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + ++ QI V++ +A+G+DA+ I P + P+ +A I ++DR I+ Sbjct: 57 YLVTAKE-PSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGINS 115 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 ++ Y + DN + G L G ++ +++ GK NVV ++G +R + F +A++ Sbjct: 116 EE---YNVYIAGDNYMYGYLAGKYIAEKLGGK-GNVVVIEGIPSTINT-ERVEAFKKALE 170 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 PN+KII Q G ++R K E+M++ + NI V+ +DDM+ G + A+K+AG Sbjct: 171 PYPNVKIIAQQPGYWSREKAFEIMQTLLTK---FPNIDAVWTGDDDMLHGVLLALKQAGR 227 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTM----- 289 K+I+ +I K +MDG PNM A + K + Sbjct: 228 D--KNIVLVGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQ 285 Query: 290 --PEKLTLTKSTLYLPDTAKEEL 310 + + + + AK+ Sbjct: 286 RGIPRKIILSTETVTKENAKDYY 308 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 6/287 (2%) Query: 5 LLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 L+ A++ +++ A A T+G+S + A+ A++ G + ADG+ Sbjct: 14 LIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFADGKD 73 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV-KDKSLY 122 Q + +F+AQGVD I + P V+ P +K+ DA IP+ + DR + + Sbjct: 74 DPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQTHGQPIKW 133 Query: 123 MTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIK 182 V+ D + G + G+ VK + GK N+V ++GT GA IDR F E I+ P+IK Sbjct: 134 EALVSWDMVKSGTIGGEQTVKAIGGK-GNIVVVEGTPGAGSTIDRGNAFYEVIEKYPDIK 192 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 I+ +F R+KG+EV E+ ++ G I +Y D+M G +QAIK AG + Sbjct: 193 ILAKIPANFNRAKGQEVTENILQRFKPG-EIDAIYYMADEMTFGGLQAIKAAGRLG--EF 249 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 S+DG + + E + P+ A L T Sbjct: 250 KIISVDGQKEAMDLLRAREIDYEAIFHPDDQAVAVRILCDIVNGRTP 296 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 120/312 (38%), Gaps = 19/312 (6%) Query: 5 LLIVSAVSAAMSSMALAAPLT----VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 L +S + + AA +G + + +A AK A G T D Sbjct: 17 LAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGATANTQD 76 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q NQ + +F+ QGV+ I I+ V G +P ++ AK A I V +D D Sbjct: 77 AQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVDTPAKSAD-- 134 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 V D + G+ +L +++ GK NV+ + GT ++ DR G +K P Sbjct: 135 ---AVVMTDAVQAGEKSCQYLFEQMGGK-GNVLLVDGTPLQTI-RDRITGCNNVVKKFPG 189 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IK++ Q+ R+ G V + A ++ ++ ND +GA+ A+++A Sbjct: 190 IKVVGQQASKNDRASGLAVTTDMLTA---TPDVQGIFGMNDPSALGAVLAVQQAHKAGT- 245 Query: 241 DILTGSIDGVPDIYKAMMD--GEANASVELTPNMA-GPAFDALEKYKKDGTMPEKLTLTK 297 + +DG P+ + + P A + + + E L Sbjct: 246 -VKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNIIDNKPPAETTILIP 304 Query: 298 STLYLPDTAKEE 309 S L DT + Sbjct: 305 SELVTRDTVSQY 316 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 132/283 (46%), Gaps = 11/283 (3%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFI 85 + ++ + AE A+++A++ G + Q + + + + +G AI + Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89 Query: 86 APVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 145 A +K+AKDA IP FL+DR I+ + + + ++N +L VK + Sbjct: 90 DNAGADASVAAVKKAKDAGIPSFLIDREINA--TGVAVAQIVSNNYQGAQLGAQEFVKLM 147 Query: 146 NGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIK 205 G+ N VEL G + A R +G+ + I + P++K + QS ++++++ ME+ ++ Sbjct: 148 -GEKGNYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYSKMETILQ 206 Query: 206 AENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 265 A +I V + ND M +GAI A++ AG KD++ DG D+ ++ G A+ Sbjct: 207 AN---PDIKGVISGNDTMAMGAIAALQAAGR---KDVIVVGFDGSNDVRDSIKSGGIKAT 260 Query: 266 VELTPNMAGP-AFDALEKYKKDGTMP-EKLTLTKSTLYLPDTA 306 V A + + Y K+ T P E+ L L D A Sbjct: 261 VLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNA 303 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 138/324 (42%), Gaps = 21/324 (6%) Query: 1 MWKRL---LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK 57 M ++L + V+ + +G SQ E WR + K E +L Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCS-EDIWRDKLNDELKM-GEYLNDSLI 58 Query: 58 I--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 + A Q K V F+ +GVD + ++P + ++ A D IPV L DR + Sbjct: 59 VKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTN 118 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 Y + DN GK +G ++ +++ GK +VE+ G G+S A++R +GF +AI Sbjct: 119 SDK---YTAFIGCDNYTIGKSMGTFIAQQLQGK-GRIVEISGLEGSSPALERHRGFMDAI 174 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 K P ++++ S+ G++ G + M+ +K ++ V+AHND + GA A ++ Sbjct: 175 KPYPGLQVVASEEGNWKEEGGIQAMKRILKQ---TQDFDYVFAHNDCLAWGAYVAARQ-- 229 Query: 236 LKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 ++ ++ +DG+ + + DG AS P K K E+ Sbjct: 230 MRVKRNYKYTGVDGMATEGGGLELVRDGIFEASYL-YPTKGDEVIALAMKILKH-QPYER 287 Query: 293 LTLTKSTLYLPDTAKEELEKKKNM 316 +++ A L + ++ Sbjct: 288 DNYLSTSIITQANAALTLMEARDT 311 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 35/332 (10%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLT-----------------VGFSQVGSESGWRAAETN 43 M LL+ + + A + + + Sbjct: 5 MKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWVEMKE 64 Query: 44 VAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 + EA +GI + I ++ + Q++ + + +++G AI IAP+ P + EA Sbjct: 65 GIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAIVEAN 124 Query: 102 DAEIPVFLLDRSIDVKD----KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQG 157 I V +D +D++ + VT DN+ G ++++ ++ + V ++G Sbjct: 125 KKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKL-PEGGEVAIIEG 183 Query: 158 TVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVY 217 G + R++G EA K K++ SQ D+ RSK +V + I+ N+ +Y Sbjct: 184 KSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVAANLIQKY---PNLKAIY 240 Query: 218 AHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPA- 276 A ND M +GA+QA+ AG IL DG P+ ++ +G+ NA+V P M G Sbjct: 241 ACNDTMALGAVQAVANAGKTG--QILVVGTDGAPEARTSIDEGKLNATVAQDPAMIGATS 298 Query: 277 FDALEKYKKDG-----TMPEKLTLTKSTLYLP 303 L + KD + K +S L Sbjct: 299 LKILIEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 27/320 (8%) Query: 1 MWKRLLIVSAVSAAMSSMALA---------------APLTVGFSQVGSESGWRAAETNVA 45 M K LL++ + S + T+G S + + + + + Sbjct: 1 MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60 Query: 46 KSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 + EA + + L ++ Q QI + F+ + VDAI I+PV + G +K+A+ A I Sbjct: 61 EKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAANI 120 Query: 106 PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI 165 PV +D D V DN GK+ G+ + + +NGK V ++ + Sbjct: 121 PVITVDVPAIGVD---VAAHVATDNYTGGKIAGEEMARLLNGK-GEVAVIEY-PTVDSVV 175 Query: 166 DRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 R +GF E I P+IKI+ Q+G TR + ++ I+A KN+ ++ DD + Sbjct: 176 QRIEGFKEVIAKYPDIKIVAIQAG-ITRPEALTAAQNMIQAN---KNLGGIFGFGDDAAL 231 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM-MDGEANASVELTPNMAGPAFDALEKYK 284 A+ A+K AG + I DG+ + A+ + A + P G Sbjct: 232 AAVAAVKSAGKE--DQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKI 289 Query: 285 KDGTMPEKLTLTKSTLYLPD 304 G EK ++ + Sbjct: 290 LKGEQVEKNIPVTPGIFTKE 309 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 133/322 (41%), Gaps = 27/322 (8%) Query: 2 WKRLLIVSAVSAAMSSMALAAPL----------TVGFSQVGSESGWRAAETNVAKSEAEK 51 +L + V M+ +A V S + AK+ ++ Sbjct: 5 KTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGKE 64 Query: 52 RGITLKIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFL 109 G+ + + + + + QI + + Q A+ ++P PVL+ A +PV L Sbjct: 65 LGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VPVLL 121 Query: 110 LDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKK 169 +D +K+K + + +N G G L + K V + G +G + +R K Sbjct: 122 IDTDAKLKNK---TSFIGTENYEAGYEGGKLLSSLLQ-KGDKVAIISGALGNTATDERVK 177 Query: 170 GFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 G A++ A + I+ Q D ++K VME+ ++ N ++ V+A NDDM +G ++ Sbjct: 178 GAKAALEEA-GMVIVAEQPADSDKTKAMSVMENILQKNN---DVKGVFAANDDMALGVLR 233 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 A++ GL D+ DG + ++++DG+ ++ P G +G Sbjct: 234 AVEAKGL----DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEK 289 Query: 290 PEKLTLTKSTLYLPDTAKEELE 311 +K + + D A+E+LE Sbjct: 290 VDKRINSGVEVITKDNAQEKLE 311 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 18/306 (5%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQ 63 LL++ V+ A S A +G SQ E WR + EA + + I Sbjct: 12 LLVLWGVAVACS--RREARFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVDIRTAVD 68 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 + Q K +R +A+GVD + +AP AT PV++EA + IPV ++DR I Y Sbjct: 69 DNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSDK---YT 125 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 V ADN GK +G+++ ++G+ +VVE+ G VG++ A+DR +GF +AI P I++ Sbjct: 126 AYVGADNYEIGKAVGEYVANVLHGQ-GDVVEISGLVGSTPAVDRHQGFVKAISAYPGIRL 184 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 + + G + + K E M++ + +I +VYA ND M GA A G + KD+ Sbjct: 185 LAVEDGAWLQLKAGEKMDTLLSR---FPHIDLVYAQNDRMAAGAYAAAAREGRE--KDMR 239 Query: 244 TGSIDGVPD---IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 ID + + ++ GE +A+ + P + + T+ +++ Sbjct: 240 FIGIDALSGKDYGVEKVLAGELDATF-IYPTGGDRVMQIAMDIL-NKRDFPRETILGTSV 297 Query: 301 YLPDTA 306 D A Sbjct: 298 VDRDNA 303 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 117/313 (37%), Gaps = 19/313 (6%) Query: 11 VSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT-----LKIADGQQKQ 65 VS+ + + V + WRA +EAEK I + Sbjct: 36 VSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDI 95 Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 QI ++ + + VD I I T P ++EA +A I V D +D ++ + T Sbjct: 96 NKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDEQ---VAT 152 Query: 126 VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR 185 V D G++ DWLVK+++GK +V L G G + R G E K P+I+I+ Sbjct: 153 VGIDQTEFGRVCADWLVKKLDGK-GKIVVLNGIAGTANDTMRWNGAEEVFKQYPDIEILG 211 Query: 186 SQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG 245 S + + ++GK MES + A I V++ M GAI A AG K + Sbjct: 212 SANASWDYAQGKAAMESMLSAY---PEIDGVWSQGGAMTQGAIDAFIAAGRKL---VPMT 265 Query: 246 SIDGVPDIYKAM---MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 S +G +A D + P +G DG K + Sbjct: 266 S-EGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVTLDIPVVT 324 Query: 303 PDTAKEELEKKKN 315 D + + Sbjct: 325 EDNVDKYYRQDMP 337 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 136/321 (42%), Gaps = 17/321 (5%) Query: 2 WKRLLIVSAVSAAMS--SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 + L +AV AA++ ++ A LT+ + + + A + A+K + L + Sbjct: 1 MRLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQ 60 Query: 60 D--GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + E Q+ A + + + A+ +A + + P LK+A IP+ LD ++D Sbjct: 61 AVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPA 120 Query: 118 ----DKSLYMTTVTADNILEGKLIGDWLVKEVN-GKPCNVVELQGTVGASVAIDRKKGFA 172 + ++++DN G +++V ++ G V+ ++G G R+ GF Sbjct: 121 VLQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFT 180 Query: 173 EAIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 E +K APN +I+ + GD+ R K + ++ ++ +Y ND M +GA++A+ Sbjct: 181 ERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRH---PDLAAIYCANDTMALGAVEAV 237 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPE 291 AG K +L DG D K++ G NASV P + G G + Sbjct: 238 FAAG----KKVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGEQVD 293 Query: 292 KLTLTKSTLYLPDTAKEELEK 312 + + + + + Sbjct: 294 PKIIVPTLVIDKAILEANRDP 314 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 139/324 (42%), Gaps = 19/324 (5%) Query: 1 MW-KRLLIVSAVSAAMSSMALA---APLTVGFSQVGSESGWRAAETNVAKSEAEKR-GIT 55 M +LL+ +S S + VGFSQ + WR K EA I Sbjct: 1 MKYLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDII 60 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 L+I D + NQ+ + F+ GVD + ++P+ + P +++A A IP ++DR I+ Sbjct: 61 LEIKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIE 120 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 ++ + V A+NI G+ +++ +GK +++E+ G G+S A +R GF + + Sbjct: 121 GQN---FTAYVGANNIEIGRNAAKYILSHSSGK-ADIIEITGQEGSSPAYERSMGFKKTL 176 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 + P +K+ GD+ ++ + + + + ++AHND M +GA + + Sbjct: 177 DSVPELKVRHVIKGDWEKTSIQSKLSDLLDSVKAP---DYIFAHNDRMALGAWEVARS-- 231 Query: 236 LKPGKDILTGSIDGV---PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 ++I +DGV + + D NA++ G L + +G K Sbjct: 232 KSLEEEINIIGVDGVFGPNGGIQLVKDNILNATILYP--TGGMETIKLAEDILNGENVNK 289 Query: 293 LTLTKSTLYLPDTAKEELEKKKNM 316 + ++ + + M Sbjct: 290 NNILRTVIIDSVNVDIMQNQFNKM 313 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 122/295 (41%), Gaps = 13/295 (4%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFV 76 A + + + A+ ++ GI L + + E QI+ + + Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS----LYMTTVTADNIL 132 DAI IAP + PVLK A++A I + +D +D + + ++ DN Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEK 163 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 ++ +E++ KP L+G A + R+ G A + P I+++ +S ++ Sbjct: 164 AAYESAGFIAREIH-KPAQAAILEGIRSADNSRQRRVGAERAFRENPLIRLVARESANWK 222 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 +G++V +I +++ ND M +GAIQ ++E+G + + D + + Sbjct: 223 IDEGRDVTRRLFSDH---PDITLLFCANDMMALGAIQFLQESGRYG---VKVAAYDALEE 276 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 +A++ G +V G L +G ++ L +++L ++ K Sbjct: 277 AKRAILSGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPEVVLVETSLVTLESLK 331 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 138/319 (43%), Gaps = 15/319 (4%) Query: 1 MWKRLLIVSAVS----AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITL 56 M + L+++A++ S + + + + + E +A+ AEK G Sbjct: 3 MKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEA 62 Query: 57 KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 ++ + + + + + + +AI + P A G +++A +A IPVF+++ I+ Sbjct: 63 DVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEIN- 121 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + L + ++N L +K V G VEL+G + A R G+ + Sbjct: 122 -QQGLAEAQLVSNNAQGAALGAQQWIKSV-GDSARYVELKGAPSDNNAATRSNGYETVLS 179 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P ++ + S ++ R++G +S ++A +I V + ND+M +GAI A+KEAG Sbjct: 180 QYPGLEKVGSDVANWDRTQGFNKTQSMLQAN---PDIDGVISGNDEMALGAISALKEAGK 236 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELT-PNMAGPAFDALEKYKKDGT--MPEKL 293 D++ G DG PD +A+ GE + +V + A +KY G + + Sbjct: 237 --LDDVVVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEK 294 Query: 294 TLTKSTLYLPDTAKEELEK 312 L L D + + Sbjct: 295 QLFDCFLITSDNVDDYTDP 313 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 31/333 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M K L+ +S V S+A LT+G + + K+ + G+ K Sbjct: 1 MRKLLVFLSVVLITGLSLA----LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKFFV 55 Query: 61 GQ-QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 Q + Q++ + SF+A+GVD I IAP T P +K+A + IPV LD D D Sbjct: 56 PQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDT--DSPDS 113 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Y+ + DN G G + + + GK VV G++ A ++ R +GF +AI + Sbjct: 114 GRYV-YIGTDNYQAGYTAGLIMKELLGGK-GKVVIGTGSLTAMNSLQRIQGFKDAIAD-S 170 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 I+I+ + + ++ + E+ + A + VYA+N QA+ Sbjct: 171 EIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPS-----QALVVKNAGKV 225 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKD------------- 286 + D PDI + + +G A++ P M G + Sbjct: 226 GKVKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLPKV 285 Query: 287 --GTMPEKLTLTKSTLYLPDTAKEELEKKKNMG 317 + + T + P+ E L+K + +G Sbjct: 286 TVDGKVDYVIDTGVDVVTPENLDEYLKKMEELG 318 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 20/317 (6%) Query: 1 MWKRL--LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M K L + V +S+ A AA + + + EA+ G+++ I Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAAA-EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 59 ADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + ++Q++ + I AP+ + + A I + LD ID+ Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119 Query: 117 KD----KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + VT DN+ G +++ ++ + V ++G G + R+ G Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGAT 179 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EA K A IK++ SQ D+ R K +V + ++ NI +Y ND M +G QA+ Sbjct: 180 EAFKKASQIKLVASQPADWDRIKALDVATNVLQRN---PNIKAIYCANDTMAMGVAQAVA 236 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP-- 290 AG +L DG+P+ K + G+ A+V P G L + Sbjct: 237 NAGKTG--KVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIP 294 Query: 291 ----EKLTLTKSTLYLP 303 + L S L Sbjct: 295 LDKAPEFKLVDSILVTQ 311 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 130/316 (41%), Gaps = 19/316 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLT-VGFSQVGSESGWRAAETNVAKSEAEKRG--ITLK 57 M K+LL+ SA+ A A L VG S + + A + A+++A++ + + Sbjct: 23 MIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVI 82 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 D Q + +F+A GVD I +A P +K A++A I V D + Sbjct: 83 TVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGA 142 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 D TV +N+ G++ ++V ++ ++ G S IDR G +++ N Sbjct: 143 D-----ATVQTNNVQAGEIACQYIVDKLGAAGGQIIIQNG-PQISSIIDRVSGCRKSLAN 196 Query: 178 APNIKII-RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P I I+ Q+G +R +G ++M+ + I V+ D G+ A ++ G Sbjct: 197 NPKITILSDDQNGKCSRDEGMKIMQGHLTRHR---KIDAVFTVCDPQATGSDLAAQQFGR 253 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTMPE-KL 293 + S+DG PDI KA G AS P + +G P+ + Sbjct: 254 N---EFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKKPDNPM 310 Query: 294 TLTKSTLYLPDTAKEE 309 L STL D + Sbjct: 311 ILMPSTLLTKDNVADY 326 >UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6Q1_9FIRM Length = 365 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 180/349 (51%), Gaps = 38/349 (10%) Query: 1 MWKRLLIVSAVSAAMSSMALAAP----------------------LTVGFSQVGSESGWR 38 M KR ++ + AAM++ +TVGFSQVG+ES WR Sbjct: 1 MKKRKVLAVLLCAAMTAALAVGCGGSKGSDSSDKSSDSSSSSDDVITVGFSQVGAESDWR 60 Query: 39 AAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVL 97 A + K +++ G L D QQKQENQI A+R+F+ Q VD I +APV TGW+ VL Sbjct: 61 TANSQSMKDTFSKENGYDLIFDDAQQKQENQITAIRNFIQQEVDYILLAPVTETGWDTVL 120 Query: 98 KEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL-----VKEVNGKPCNV 152 +EAKDA+IPV ++DR +DV D SLY T + D + EG+ +WL K + ++ Sbjct: 121 QEAKDADIPVIIVDRMVDVSDDSLYTTWIGTDALCEGRKAAEWLNGFAEAKGIAASDIHI 180 Query: 153 VELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKN 212 ++QGT+G++ I R KG E + ++ Q+G+FT++KG+EVMES +K N Sbjct: 181 ADIQGTIGSTAQIGRTKGLEEGVDKY-GWDLVAQQTGEFTQAKGQEVMESMLKQY---DN 236 Query: 213 ICMVYAHNDDMVIGAIQAIKEAGLKPGKD-----ILTGSIDGVPDIYKAMMDGEANASVE 267 I +VY ND+ GAI AI+ AG G D I+ S D + ++DG+ VE Sbjct: 237 INVVYCENDNEAFGAIDAIEAAGKTVGSDIANGEIMVISFDTTHAGLQDVLDGKIECDVE 296 Query: 268 LTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNM 316 P A + L K + G +KL ++ D + ++ ++ Sbjct: 297 CNPLHGPRA-EELIKKLEAGEDIDKLNYVDEEIFAHDDTVKSVKATNSL 344 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 139/321 (43%), Gaps = 20/321 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAA---------PLTVGFSQVGSESGWRAAETNVAKSEAEK 51 M K +++ ++ A+S+ A +A P+T+ S + ++EA+ Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 52 RG-ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 110 G + + +DGQ QI + + + QGVD I IAP AT PVL+ A I V + Sbjct: 61 LGNVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTI 120 Query: 111 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 170 DR ++ + V ADN++ + G+ V+++ + ++ LQG G A DR KG Sbjct: 121 DRPVNG--VPEVIANVAADNLIGAQRQGEA-VEKLFPQGATIINLQGIPGDKTANDRSKG 177 Query: 171 FAEAIKNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 + + P K + Q+ F R +G V E+ + N ++ A NDD +GA Q Sbjct: 178 VHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPP--TVIVAGNDDSALGAAQ 235 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGT 288 A++ GLK I DG D KA+ DG +V+ P G A L Y + G Sbjct: 236 AVEARGLKG--KIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIRTGA 293 Query: 289 MPEK-LTLTKSTLYLPDTAKE 308 P L + Sbjct: 294 RPATVDVLVSPVAITSKNLND 314 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 126/331 (38%), Gaps = 25/331 (7%) Query: 1 MWKRLLIVSAVSAAMSSMALAA-----------------PLTVGFSQVGSESGWRAAETN 43 M KRLL + V+A ++MA+ VGF+ + A + Sbjct: 1 MKKRLLSILMVTAMCATMAVGCGTADDTKDSSSSSKGKSDYLVGFANNSDTYNYCAKFRS 60 Query: 44 VAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA 103 K E +GI++ + D Q + F+ Q + + G P L+ AKDA Sbjct: 61 YLKDATEAKGISITVTDAGGDTNVQNGQIDDFIVQNANVVSAISNDLDGSIPALEAAKDA 120 Query: 104 EIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 +P S+ D V + N GK G++L +++ G Sbjct: 121 GLPYVSFLTSVSGGDDYDGYIYVGSPNEDAGKAQGEYLCDAF-PDGASILYFTGAPNDQQ 179 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 +DRKKG EA+K PNIKI+ + + ++ G E + + I + NDD Sbjct: 180 YVDRKKGLEEALKKNPNIKILDEYNVENSKDLGMSTAEDSLLSY---DKIDAIVCQNDDG 236 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 +G ++A+K AG I IDG D +++ DGE + A + + Sbjct: 237 ALGVVEALKSAGK--LDSIQVLGIDGSDDALQSIQDGEMTMTALQDAKAQAEAGADIFEK 294 Query: 284 KKDGTMPE--KLTLTKSTLYLPDTAKEELEK 312 K GT P + + D + L K Sbjct: 295 LKKGTDPADIEDVNIPFKIVTKDNVADYLSK 325 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 123/320 (38%), Gaps = 21/320 (6%) Query: 1 MWKRLLIVSAVSAAMSSMALAA----------PLTVGFSQVGSESGWRAAETNVAKSEAE 50 M K+ L + +S +S+ LA + ++S + + A+ A+ Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 51 KRGITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 + G + +Q + ++ V + Q VD I +A ++ A +A+IP+ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 109 LLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 168 +D +D + + DN D + E+ GK V + G S A+ R+ Sbjct: 121 TVDSGVDSDK---VASFIATDNEKAASQAAD-VCAELIGKSGKVGVVNFVPGVSTAVQRE 176 Query: 169 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 KGF + + I+++++Q +SK + E + A ++ ++A N+ +G Sbjct: 177 KGFRDGMSKHSGIELLKTQYSQSDKSKAMAITEDILTAN---PDVKAIFAANNRSALGVA 233 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGT 288 QA+K G + + D PD K + DG A + P G G Sbjct: 234 QALK--GKGVAGKVKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGE 291 Query: 289 MPEKLTLTKSTLYLPDTAKE 308 EK T T+ + + Sbjct: 292 TVEKRIDTGVTIVTKENIND 311 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 129/316 (40%), Gaps = 32/316 (10%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ------QKQENQIKAVR 73 P + + + ++ A++ GI + + + QI + Sbjct: 74 ATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTIL 133 Query: 74 SFV-AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + +D + IAP + P++++A I V ++D ID +T VT DN Sbjct: 134 ELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ---ILTFVTFDNFE 190 Query: 133 EGKLIGDWLVKEVN-----GKPCNVVELQGTVGASVAIDRKKGFAEAIK---NAPNIKII 184 G+++G+W+++++ N++ L+G++ I+R++GF E +K +++I+ Sbjct: 191 GGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEIL 250 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 +S D+ K K + +++++ I ++ A +D M +GA +A++EA I+ Sbjct: 251 DLKSADWETKKAKMITQAWLEK---FPTIDVIMAADDQMAVGASEAVQEANKSG---III 304 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM--------PEKLTLT 296 DG P A+ G+ +A++ P L + + Sbjct: 305 TGFDGTPYGLNAIKTGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQLIGQEQTE 364 Query: 297 KSTLYLPDTAKEELEK 312 S L D E L Sbjct: 365 NSLLITQDNINEALNP 380 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 128/309 (41%), Gaps = 19/309 (6%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAV 72 +S+ +G+ + + + A++ ++ + G T E Q++ + Sbjct: 71 ATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQVQLM 130 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + + Q VDAI + + G +++A+DA + V + D Sbjct: 131 ENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLR----TGVDYYE 186 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 G + + ++ GK + L+G GAS AI+R G + I+I+ SQ+ +F Sbjct: 187 SGYTMAKAVADKLGGK-GKFIILEGPAGASNAIERLNGINTGLSEYEGIEIVASQTANFK 245 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R++G V E+ I+ +I V A ND+ +GA+QA+ A + D+L DG D Sbjct: 246 RTEGMSVTENLIQQYT---DIDAVIACNDESALGAVQALTAANMS---DVLVCGFDGSVD 299 Query: 253 IYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMPE-KLTLTKS----TLYLPDTA 306 A+ +G A+ P +G A KY D T PE K + L + DT Sbjct: 300 ATNAVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPTAANDPLVIADTV 359 Query: 307 KEELEKKKN 315 + ++ Sbjct: 360 QNYIDNIAW 368 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 18/317 (5%) Query: 3 KRLLIVSAVSA-------AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT 55 +RLL+ S + A + A S + + + K ++ G Sbjct: 21 RRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDR 80 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 L D Q Q + + Q AIF+ PV L A++A+IPV ++D + Sbjct: 81 LVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPV- 139 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 D L + V +DN+ G+L L V LQ +V +DR GF + + Sbjct: 140 -PDADLVLAQVASDNVAAGRLAAQALGDA--RPQAKVAILQYSV-NKACVDRVAGFTDVL 195 Query: 176 KN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 P II Q T + VM + ++ V+ ND IG + AI A Sbjct: 196 AKSFPGATIIARQDVKGTSEATRPVMRDLL---GRFPDLDAVFPINDPGAIGCVSAIDAA 252 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 G +L ++DG + + +++G +++ P G G +K Sbjct: 253 GRSG--KVLVVTVDGSREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHLAGKPVDKEI 310 Query: 295 LTKSTLYLPDTAKEELE 311 TL A E ++ Sbjct: 311 KVPVTLVTKANAAEFVK 327 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 23/323 (7%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGW-----RAAETNVAKSEAEKRGITLKI 58 RL+ V + A + AA +G S ++ GW A A +A+++ I + Sbjct: 9 RLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDIEFFV 68 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 Q+ V + +G+DA+ I P + V++EA D I ++DR + Sbjct: 69 V-ASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDRELAHPA 127 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 +++ + DN G++ WL KE++GK NVV ++G + R F + I Sbjct: 128 QNV---FIAGDNAGLGRVGAQWLAKEMSGK-GNVVVIEGLQ-IPINKQRVDAFNDVIAGY 182 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 PNIKI+ SQ GD++ K VME+F++ I V+ +DDM+ G ++AI+E+G Sbjct: 183 PNIKILDSQPGDWSTQKALSVMENFLQKH---PKIDAVWCQDDDMLKGVLKAIEESGRTD 239 Query: 239 GKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTM-----PE 291 K +L G DI + + G A+V +P+M K + Sbjct: 240 IKTVL--GGAGSKDIIEMIQSGNKMVRATVTYSPSMIASGIALAVHGVKHEKLGYLYHEP 297 Query: 292 KLTLTKSTLYLPDTAKEELEKKK 314 + + L + A + K Sbjct: 298 SRVILGADLVTKENAADYYFKDA 320 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 11/291 (3%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 P +G + + + + + ++ G L D + Q + + + Q Sbjct: 40 STEPRKIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQQ 99 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 VDAI IAPV G E LKEA IPV ++D + ++ +DN G Sbjct: 100 VDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNKN--ITYSIVSDNYDAGVQCAK 157 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 ++++++ N+V LQ + R KGF + I++ N K+++ D Sbjct: 158 DMMRKLD--HANIVLLQHS-TTRSGYLRIKGFEDTIQSNENYKVVKRMECDGQLEVAMPK 214 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 MESFI G +V ND +GA+ A+ + KD IDG P+ + +++ Sbjct: 215 MESFI---EEGIEFDVVMCLNDPSAMGAMAALSSNNI--LKDKYVYGIDGTPEAKEMVVE 269 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPE-KLTLTKSTLYLPDTAKEE 309 G+ A+V +P G + + K ++ + + ++ Sbjct: 270 GKMAATVAQSPKTFGKKAGEVIYKLFSQETIKNKNEMSPVQIITKENVQDY 320 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 131/310 (42%), Gaps = 13/310 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG 61 +L V +A +++ A AA T+ + + A++ A+ G + Sbjct: 3 KLKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHYIP 62 Query: 62 --QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 Q+ + + + AI PV P +++ DA+IPV + D Sbjct: 63 TKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNV---TDRSAG 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 ++ V AD+ G G +L+KE+ GK NVV L+G G+ +DR +GF +A+K Sbjct: 120 GKFLAFVGADDYSLGLETGRYLLKEMGGK-GNVVILEGVKGSLTNVDRVRGFNDALKEFK 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 ++K++ SQ ++ R +G +VME+ +++ I V A ND M IGAI+A+ A K Sbjct: 179 DVKLLASQPANYQRLQGLQVMENLMQSH---PQIDGVLAANDAMAIGAIEALDGANRKA- 234 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 I+G + A+ G+ AS + + G + + K T Sbjct: 235 ---KVVGINGTKEAVDAIKSGKLLASGDYNGFLQGCIGTMVAIRALRKETIVNEVVLKPT 291 Query: 300 LYLPDTAKEE 309 + K Sbjct: 292 VVNASNYKPY 301 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 122/310 (39%), Gaps = 15/310 (4%) Query: 5 LLIVSAVSAAMSS----MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + + +++ S + + T+G + + + K+ E +G L+ D Sbjct: 24 TICIVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRD 83 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + Q K V F+ + VD I I V L++AK A IPV +D I ++S Sbjct: 84 SGMDAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALI--YNRS 141 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP- 179 TV ++N G+ L+K K ++ L AIDR KGF E ++ A Sbjct: 142 FVDGTVVSNNYQAGEQCAKDLMKR--RKKGKILFLV-QSENKSAIDRIKGFKETLEKAGW 198 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 + + + ++E + N K+I +V A ND +GA+ A+ + Sbjct: 199 KYENVGELECQGQLELSQPLVEKVL---NKTKDIDVVMALNDPSAMGAMAALDAEHM--L 253 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 D+L DG P+ + + + A+ +P G + DG EK + + Sbjct: 254 SDVLVYGADGSPEAKTMIYENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEKQCIVPVS 313 Query: 300 LYLPDTAKEE 309 L D + Sbjct: 314 LITKDNINDY 323 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 119/297 (40%), Gaps = 11/297 (3%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKA 71 ++ + + + S G + A++ A++ G + + Q+ Sbjct: 21 SVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNV 80 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 + FV + +DAI +A A P LK A +A IPV +D I+ ++ + +N Sbjct: 81 INDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINAD---FPISHIATNNK 137 Query: 132 LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDF 191 K + L + GK V + GA+ +I R+ GF E I N NI ++ Q Sbjct: 138 EAAKKAAEVLA-NIIGKKGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQS 196 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 + +V E+ + A N+ ++A N+ +GA +A+K G D++ D Sbjct: 197 DYATAMKVTENILTAH---PNLKGIFAANEAGAVGAARALKARGKTA--DVILVGFDAAQ 251 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 AM +G +A + P M G +G EKL T + PD + Sbjct: 252 TEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMND 308 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 134/333 (40%), Gaps = 30/333 (9%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPL----------------------TVGFSQVGSESGWR 38 M K+ ++ AV +M MA A V + ++ + Sbjct: 1 MMKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFM 60 Query: 39 AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 98 K E G +++ D Q+ + + +++ +AI + P G LK Sbjct: 61 VGMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLK 120 Query: 99 EAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGT 158 EA DA IPVF++ ++ D L + + D G+L + ++K+ G+ + + GT Sbjct: 121 EAHDAGIPVFVIHNNVSATD--LVTSLIHVDVRQGGELKMEQVIKDC-GEDAKIAIMTGT 177 Query: 159 VGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 +G G+ ++ PN++++ +G++ + + E+++ + GK I + Sbjct: 178 LGQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLAS---GKEIDAIVC 234 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD 278 +ND M +G + +K AG + I +D + KA+ GE A++ + Sbjct: 235 NNDGMALGVVSVLKSAGKS--EQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAEIEKAF 292 Query: 279 ALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 + + K G + S L + KE ++ Sbjct: 293 EMLEDLKAGKKVDAEYKVPSVLVTKENVKEYMK 325 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 141/354 (39%), Gaps = 41/354 (11%) Query: 1 MWK------RLLIVSAVSAAMSSMALAAP------LTVGFSQVGSESGWR----AAETNV 44 M K R+ + ++A M+ A + +G + + + A+ N Sbjct: 1 MKKMKSRIARICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENA 60 Query: 45 AKSEAEKRGITLKI--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 102 K + EK G + + AD + Q +Q V F+ +G DAI + V T ++ +AK+ Sbjct: 61 IKDKEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKE 120 Query: 103 AEIPVFLLDRSIDVKDKSLY--MTTVTADNILEGKLIGDWLVK----------EVNGKPC 150 A IP+ +R +D +++ V D G+L G + + Sbjct: 121 AGIPIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKL 180 Query: 151 NVVELQGTVGASVAIDRKKG-FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENN 209 V L+G ++ R + +K + + S +G++ RS E+M+ +I Sbjct: 181 QYVMLEGEQVHQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEWIGQY-- 238 Query: 210 GKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELT 269 G I +V ++ND+M +GAI+A+ E G+ G + IDG D + ++ GE +V Sbjct: 239 GSQIEVVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGEMEGTVMND 298 Query: 270 PNMAGPAFDALEKYKKDGTMPEKLTL--------TKSTLYLPDTAKEELEKKKN 315 + + +G P++ + D +E ++ K Sbjct: 299 ARGQAESILGIACACAEGKDPKQEVPELKGQYVRVPHSPVTADNVQEFIDYKNK 352 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 10/287 (3%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 G + + + + N + + EK G + D Q+ Q + ++ V + VDA Sbjct: 44 KKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDA 103 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 IF+ PV EP L AK A+IPV ++D + D L T+ +DN G L ++ Sbjct: 104 IFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSD--LVAMTIVSDNYKAGVLCAKEMM 161 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 K+ N+V L A A+DR GF + IKN N KI+ S + ++ Sbjct: 162 KQ--KDQANIVLLTHNA-ARSAVDRINGFLDTIKNNKNYKILASADTQGQIERALPKVDK 218 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 I+ NI +V ND +GA+ A+ G + G +L IDG P+ K + +G Sbjct: 219 IIEEYQ---NIDVVMGLNDPAAMGALAALDSKGAREG--VLVYGIDGSPEGKKLIKEGMM 273 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + +P G EK + + ++ Sbjct: 274 TGTAAQSPKQMADTAVNAAYQILQGEKVEKKKVISVQMITKKNVEQT 320 >UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGU5_9FIRM Length = 356 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 115/298 (38%), Gaps = 12/298 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIF 84 +G + + + G ++ I DG+ Q Q + + +F+ QGVD + Sbjct: 60 NIGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLV 119 Query: 85 IAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM---TTVTADNILEGKLIGDWL 141 I PV T + ++ + P+ ++R + Y V AD G G+ + Sbjct: 120 INPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELI 179 Query: 142 VKE------VNGKPCNVVELQGTVGASVAIDRKKGFAEAI-KNAPNIKIIRSQSGDFTRS 194 ++ + +G A R + +A+ ++ + ++ ++ Sbjct: 180 LETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDNWDQT 239 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 ++ + + + G I +V+ +ND M +GA+Q+I++AG GKD+ +D + + Sbjct: 240 TAQQDVANALSQY--GDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALVEAV 297 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + ++DG +V K +G EK D A + L++ Sbjct: 298 QNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEKYYWVDYVKVTKDNASQYLKE 355 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 127/312 (40%), Gaps = 6/312 (1%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M K+ L + V+A ++S A TV + + + A++ G+ + Sbjct: 1 MNKKTLF-AGVAALIASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKELGVEVLSLS 59 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 + ++ + + +A+ I + P+ + P L +AK A IPV L++ ++ K Sbjct: 60 QNFDVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDAAKP 119 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-AP 179 + D EG++ + L K ++GK ++V + G G I R GF +K Sbjct: 120 FVTSFTGPDVYSEGEMAAEALQKALDGK-GSIVIIAGQAGNGTTIGRVDGFNAKLKALGS 178 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 I+++ + + DF + K I G I VYA++D M G I A KEA Sbjct: 179 KIEVLDTVNADFDQQKALVASRDLITR--FGDKIAGVYANDDTMARGFIDAWKEA-KSGK 235 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 I+G D ++++ +GE A++ +P G +G + T Sbjct: 236 ATPPIVGINGQKDAFESIRNGEMYATIVQSPIEDGLLAINAMADVLNGKKIDARLPIPLT 295 Query: 300 LYLPDTAKEELE 311 + ++E Sbjct: 296 VVTKANVEKEKP 307 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 20/321 (6%) Query: 1 MWKRLLIVSAVSAAMSSMA----LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR---- 52 M K L ++ A + + +G + + GW A A+ +A+ Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 I I Q+ V +AQGVDAI + P+ + P+ + ++A IP+ ++DR Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + ++ V DN G G++ ++++ G VVE+ G SV R GF Sbjct: 121 ELTNDAATVV---VKGDNYGAGVNAGEYFMEQLGG-NGKVVEIAG-PSNSVTQQRSDGFR 175 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EAI +I+I+ SQSG+F+ +VME+ + ++ I VY +D M +G +QAI Sbjct: 176 EAI-EGSDIEIVASQSGEFSTETSLQVMENILTSQ---PEIDAVYTQDDGMALGVLQAIN 231 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMM-DGEANASVELTPNMAGPAFDALEKYKKDGTMPE 291 EA + + G D+Y+ +M DG A+ +P M Sbjct: 232 EANRTDIQ--FITGVAGSKDVYEIIMDDGLITATFLYSPLMVKEGVIIGADLANGEDPDS 289 Query: 292 KLTLTKSTLYLPDTAKEELEK 312 + +T D + + Sbjct: 290 AEVVVPATPVTKDNVDDHYDP 310 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 15/291 (5%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 T+G S + S + + + +A++ G TL + D Q+ V+ F+ + Sbjct: 55 KGEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKK 114 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 VDAI IAP + G + +++ A+ A IPVF +D + D K +T V DN G+L + Sbjct: 115 VDAIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP----VTHVATDNKKGGQLAAE 170 Query: 140 WLVKE-VNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSKGK 197 ++V + K NV + + +DR+ GF + +K P+IK++ Q+ + K Sbjct: 171 YVVNNILTEKKGNVAVITYSE-IESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAA 229 Query: 198 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAM 257 +VM++ + NI +V+ D IGA+ +I A DG P+ + Sbjct: 230 DVMQNMLLKN---DNIDVVFCVGDPAAIGALSSITAANAAT----KIIGYDGNPEGVAEI 282 Query: 258 MD-GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G A V P G K +G + L + AK Sbjct: 283 KKGGNWVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEILIAPYIIDAKNAK 333 >UniRef50_C0CVX1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVX1_9CLOT Length = 373 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 146/297 (49%), Gaps = 5/297 (1%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 VG +Q+ + +R AETN E G + + + QI V +AQ Sbjct: 81 FGKGKKVGLAQMHYTNAFRIAETNSVLEAFEGAGFEVVWNEAKNDTATQISNVNDLLAQD 140 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 +D + + P G P L+ AK A +PV LLDRS + Y+T + ++ EGK D Sbjct: 141 IDYLLLPPKEEEGLVPALEAAKAAGVPVILLDRSANGTPGEDYVTAIRSNAEAEGKWCAD 200 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 W+++ K CNVVE+ G G++ A+DR KGF IK NI ++ SQ G+ RS+ + Sbjct: 201 WVIQNYPDK-CNVVEIFGAPGSTTAMDRSKGFMATIKGHDNIVLLESQVGNNMRSEAQVC 259 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI-DGVPDIYKAMM 258 ME+ I+A G I +V H+D+M GA+QAI GL PG+DI SI DG + + ++ Sbjct: 260 MENLIQAY--GDEIDVVVTHSDEMTFGALQAIDGMGLVPGEDIDVLSIGDGSSAMLQEII 317 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKN 315 DG A E +P + A + + G + L + D A ELEK Sbjct: 318 DGRVAACSECSPLLGPQALQVVAA-LEQGMEVDGLIWANDRFFTVDNAATELEKAGW 373 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 130/319 (40%), Gaps = 14/319 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITLKIAD 60 K + + ++A M+ A A T+G S + ++ ++ A + G +TL+I D Sbjct: 1 MKSIFTAAVLAALMAGTASAE--TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIED 58 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK- 119 Q Q+ V +F+A VDAI I + + A+ A IP+ L+ + ++ Sbjct: 59 AQADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRL 118 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKP----CNVVELQGTVGASVAIDRKKGFAEAI 175 V + G+L + + + K + L G + + DR E + Sbjct: 119 PKNQAYVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETL 178 Query: 176 K--NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 + I +S + R+ +V ++I G+ I ++A++D+M IGAIQA+K Sbjct: 179 AAGECKGVTIADERSAAWMRTNAMDVTTNWITT---GRPIDAIFANSDEMAIGAIQALKA 235 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 AG+ D++ ++ D AM DG+ + +V + G ++ Sbjct: 236 AGVSK-NDVIVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSVDRQ 294 Query: 294 TLTKSTLYLPDTAKEELEK 312 + L P+ + K Sbjct: 295 VMVPFELVTPENMAKYNNK 313 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 13/293 (4%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKS----EAEKRGITLKIADGQQKQENQIKAV 72 + + + F +S + T A+ A+K + + E QI+ V Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 73 RSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNIL 132 + +DAI IAP + G P +K+A DA I V + + D ++ V A N Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGD---IVSYVGAQNFD 163 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFT 192 G + L +++ G+ V+ ++G G S + +R +GF EA+K P I+++ SQ D+ Sbjct: 164 VGYSLATALFEKLGGQ-GKVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWD 222 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R+ VME+ ++ I V DM +G I+AIK AG K+I++ + D D Sbjct: 223 RASAMTVMENCLQTY---DQIDGVLTLTKDMGLGTIEAIKSAGRD--KEIVSMTFDVDDD 277 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 + A+ G+ AS + DG + + T+ + Sbjct: 278 VISALKAGDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAED 330 >UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM Length = 384 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 119/307 (38%), Gaps = 19/307 (6%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT---LKIADGQQKQENQIKAVRSFVAQ 78 + VG + ++ +G +KI DG Q Q + +F+ Sbjct: 77 SDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIKIMDGANDQATQTNQIENFITD 136 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY------MTTVTADNIL 132 VD + + PV ++ + + + A IP+ ++R D ++ + +T V D Sbjct: 137 KVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQDEEKRWEEKNWDVTYVGCDARQ 196 Query: 133 EGKLIGDWLV-------KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKII 184 G G+ + + + ++G A R + +A+++A + + Sbjct: 197 SGTFQGEIIASVGMDKLDMNGNGKVDYIMIKGDPENIDAQYRTEFSVKALQDAGMEVNKL 256 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 Q G++ ++ + ++ + + GK+I +V+ +ND M +GA+QAI+ AG GKDI Sbjct: 257 DEQVGNWDQALAQSLVANALAKN--GKDIEVVFCNNDSMALGALQAIQAAGRTVGKDIYL 314 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 +D + + + ++ G +V A G + D Sbjct: 315 VGVDALEEACQNVLAGTQTGTVFNDFLTQSHAAGDAAINYLGGKGNDHYIGCDYVKVTKD 374 Query: 305 TAKEELE 311 A++ L Sbjct: 375 NAQDVLN 381 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 130/296 (43%), Gaps = 11/296 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV 76 + LT+G S + + + K +A++ G+ + + D Q Q A+ F+ Sbjct: 35 GGSDKKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFI 94 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTAD-NILEGK 135 Q VD + + + P ++ A + +PV +D ++ ++ + Y+ TV+ D G+ Sbjct: 95 QQNVDGMIVLGTDNSAIVPAVEGAFEK-MPVVTVDAVLNTENITSYVGTVSYDAGKKLGE 153 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 ++ +++ GK + + + + + + R GF +A+K + N+KI+ SQ G + R + Sbjct: 154 YTKKYIDEKLGGKS-EIAIVT-DLKSQIQMQRIDGFKDALKGSANVKILNSQPG-YDREE 210 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 +E+ I++ ++ ++YA ++ V+GA A++ A KD+ D + Sbjct: 211 SLNTVENLIQSN---PDVDIIYATAENSVLGAKAALESA---KNKDVKIVGFDLTEEASS 264 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE 311 + DG A ++ P G G EK + LY + K+ Sbjct: 265 GITDGTILAMIQQQPKEMGRLAVEAVVKAIKGEKVEKNIPVPALLYDKENIKDFKN 320 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 125/318 (39%), Gaps = 14/318 (4%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG 61 KR++I + +S A A +G + + A K EA K L++ Sbjct: 1 MKRMIIGTTAMFLAASSAYAGD--IGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQVEFA 57 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI-DVKDKS 120 Q+ +++F+A VDAI + V +T + K A DA IP+ ++ + D+ Sbjct: 58 DADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQLG 117 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKP----CNVVELQGTVGASVAIDRKKGFAEAIK 176 + + I G L + + + + ++ +QG + A R K + + Sbjct: 118 PKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDVVA 177 Query: 177 --NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEA 234 +KII Q+ + K +++M ++I A G V ++NDDM +GA+ ++K A Sbjct: 178 TPECNFMKIIDEQTAQWDPVKAQDLMTNWITA---GHKPVAVLSNNDDMALGAVNSLKAA 234 Query: 235 GLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT 294 G + KD++ ID + + G+ +A+V G G E Sbjct: 235 GWE-MKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPV 293 Query: 295 LTKSTLYLPDTAKEELEK 312 L L K Sbjct: 294 WIPFELVNAANVDTYLNK 311 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 20/320 (6%) Query: 6 LIVSAVSAAMSSMALAA-----PLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIA 59 ++++A + SS A +G SQ + W A + A + I ++ Sbjct: 19 VMLAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFT 78 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D +Q QI V +F+++G+D + I+P A+ P++ A IPV +LDR + + Sbjct: 79 DARQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ- 137 Query: 120 SLYMTTVTADNILEGKLIGDW---LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 Y + ADN L G+ G++ +E PC V+EL+G G++ +R GF E I Sbjct: 138 --YTMWIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPTQERGDGFREGIA 195 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P+++II SQ+ D+ + + +A ++ +VYAHND M I A KE G Sbjct: 196 ANPDVRIIASQNADWLAERADALARVLFEAN---PDVDVVYAHNDPMGIAAFNVAKEQGR 252 Query: 237 KPGKDILTGSIDG---VPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 IL ID +A+ G+ N + P A + + + P + Sbjct: 253 DT-DAILFIGIDALATSDGGIQAVRQGKLNVTYV-YPTGGAEAIEWALRILEQRETPPRE 310 Query: 294 TLTKSTLYLPDTAKEELEKK 313 + + A +K Sbjct: 311 IILDTEEVTTANADAMFQKY 330 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 119/312 (38%), Gaps = 17/312 (5%) Query: 1 MWKRLLIVSAVSAA---MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK 57 M + + S ++ S +A + + A ++EA+ G+ + Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAEY--AVILKTLSNPFWVAMKEGIENEAKALGVDVD 58 Query: 58 IADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 I + ++Q++ + + I AP+ +A I + LD ID Sbjct: 59 IFASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKID 118 Query: 116 VKD----KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGF 171 +K+ K +T DN+ G ++V ++ + V ++G G + R++G Sbjct: 119 IKNLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVAIIEGKAGNASGEARRRGA 178 Query: 172 AEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAI 231 E + +IK++ SQ D+ R K +V + + N+ Y ND M +G QA+ Sbjct: 179 REVFVKSSSIKLVASQPADWDRIKALDVATNVLSRN---PNLKAFYVANDTMAMGVAQAV 235 Query: 232 KEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG-PAFDALEKYKKDGTMP 290 AG + IL DGVP+ K + + + A++ P M G L + G Sbjct: 236 INAGKQG--KILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAARAGKQI 293 Query: 291 EKLTLTKSTLYL 302 K Sbjct: 294 PVDVEPKIETVD 305 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 9/297 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV 76 A LT+G + ++ + ++E + RG+ + D Q Q+ + + Sbjct: 22 GSTWAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLI 81 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 + +DA+ P AT +K AK A IPV +DR+ T + +D++ K Sbjct: 82 TRQIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGD---TFIASDSVAGAKA 138 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 + +++ K +GK + LQG +G + DR KGF E +K P +K++ Q ++ + KG Sbjct: 139 LAEYVGKVTDGK-GRIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKG 197 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 V + ++ + NI + + D M +GA QA+K A L ++ KA Sbjct: 198 FAVAQDLLQRD---PNITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDG--DVAGLKA 252 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKK 313 + G A++ G A K G K L ++ L D L++ Sbjct: 253 VASGVLQATMTQQTQKMGRMAVASALDLKAGKAVPKEQLLETVLTTKDNVAPFLQQH 309 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 8/297 (2%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A V S + A + EA K G+ +++ D Q QI ++ Sbjct: 28 MTGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQISDLQ 87 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 + QG + +AP + + + + V +DR+I + + V ADN+ Sbjct: 88 AAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKTA--VPHVGADNVAG 145 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN-APNIKIIRSQSGDFT 192 G+ + DW+VK VV + G+S +I+R KG + + P KI+ Q+ + Sbjct: 146 GRAMADWVVKTY-PAGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSK 204 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 R + V ++ + + + ++ NDDM +GA++A++ AGL K + D +P+ Sbjct: 205 RDQALTVTQNILTSMRDTPP-DVILCLNDDMAMGALEAVRAAGLDSAK-VKVIGFDAIPE 262 Query: 253 IYKAMMDGEANASVELTPN-MAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 + GE A+VE P A K G K K L E Sbjct: 263 ALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAAL-KSVSLKPVLITSGNLTE 318 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 14/309 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR----GITLKIAD 60 L SA S A +G + + A+ A + T + Sbjct: 34 LAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGIN 93 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV---K 117 ++ QI + V + D I +AP + + +A A I V +D ++D K Sbjct: 94 DERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATKK 153 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + DN K+ G+ L K + V L+G A A+ R+ GF +AI + Sbjct: 154 AAGIDLAFFGPDNRAGAKMSGEVLAKALGA-GGKVAVLEGNPEADNAVQRRLGFDDAIAD 212 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 + ++ ++SG + S+G+ + +++K ++ + ND M GA+QA++ A L Sbjct: 213 GS-LNLVVAESGHWETSEGQSITAAWLKKY---PDLQGIMCANDSMAFGAVQALEAANL- 267 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 I D +P + + DG+ A+VE G T+ Sbjct: 268 -LDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSGWIRTE 326 Query: 298 STLYLPDTA 306 L D Sbjct: 327 LKLITKDNL 335 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 133/339 (39%), Gaps = 34/339 (10%) Query: 1 MWKRLLIVSAV------SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS--EAEKR 52 M KR L+ + +A + A A + + + + AKS Sbjct: 3 MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62 Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 TL + DG+Q Q + + + DAI PV ++ AK A IPVF + Sbjct: 63 TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 + LY + ++++ G+++ ++ + GK VV L+G +G S + R +G Sbjct: 123 VV--SKTELYDAYINSNDVEAGEMLAKAVIDK-AGKDAKVVVLEGMLGQSAQVQRLEGIN 179 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 +K + I+ + +++R++ +ME+F+ + G + V A ND+M +GAI+ I+ Sbjct: 180 NVLKQNSGVTILEQNTANWSRAEAITLMENFLTSH--GDQVQGVLAENDEMAVGAIEGIR 237 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP-- 290 GL P K + +DG+ D +A+ GE S+ + L K G Sbjct: 238 NHGLDP-KKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLALSKLVGDTYKP 296 Query: 291 ------------------EKLTLTKSTLYLPDTAKEELE 311 E+ D + L Sbjct: 297 RAKVWDTNGGKLAWNGGKEEHYYVPWLAVTSDNVDKVLA 335 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 119/291 (40%), Gaps = 13/291 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA--DGQQKQENQIKAVRSFVAQGVDA 82 +G + + + + AE GI +++ D + + Q+ A+ + V G DA Sbjct: 91 KIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDA 150 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFL----LDRSIDVKDKSLYMTTVTADNILEGKLIG 138 I ++P+ T P + A +AEIPV +D +T + +G + Sbjct: 151 IILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEEQGSTVA 210 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + ++ + V L G GA ++ R G +N ++++ +Q+ D+ K E Sbjct: 211 NDMISRMED-GGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACDWDTEKAYE 269 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 + + A ++ ++A ND+M + A+QA++E G KD++ +D D A+ Sbjct: 270 ATKDILTAH---PDLKGIFACNDNMALAAVQALQEMG---NKDVMVYGVDYTTDAKAAIE 323 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 DG S+ + + A + + G + TL D + Sbjct: 324 DGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVADF 374 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 74/310 (23%), Positives = 141/310 (45%), Gaps = 6/310 (1%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 M + L I + S + +A AA +G ++ + + + + + + Sbjct: 1 MKQWLSISLSASLLFAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQVALLDADIFMEN 60 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 GQ E Q++ R+ V VDAI +A V +++ A +A++P+ ++R+ + Sbjct: 61 GQDDVELQMRQFRNLVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNPEPATWP 120 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 V +D + G L + L + N K NVV L G ++ R + + + P+ Sbjct: 121 ALTAFVGSDELESGTLQMEELARRANYK-GNVVILVGDPSNKSSVMRTEDVEKVVAKYPD 179 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 +K+++ + G++ RS+ ++ ++K G + ++ A+ND+M IGAI +++ G K G Sbjct: 180 MKVVQKKIGNWERSQAATIVIEWVKQ---GVDFSIIAANNDEMAIGAIMGLEKTGKKAG- 235 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKST 299 D L G IDG PD K M +G+ SV A DA + + T+ + Sbjct: 236 DYLVGGIDGTPDGLKLMAEGKMAVSVFQDALGQANGAVDAAMRMARGETLASPVIWVPFK 295 Query: 300 LYLPDTAKEE 309 L P+ ++ Sbjct: 296 LITPENRQQF 305 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 20/295 (6%) Query: 22 APLTVGFSQVGSESGWRAAETNVAK---SEAEKRGITLKI----ADGQQKQENQIKAVRS 74 + +G E+ + + + ++ G + + A G+ ++ Q+ V Sbjct: 69 GEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVED 128 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + + A+ ++P+ P +++AK IPV ++ I V I+ G Sbjct: 129 MINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGI----IKNADIFVGPKAIMNG 184 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTR 193 +L +W+ K++ G+ V + G A A R GF +K NA +KI+ Q+ D+ R Sbjct: 185 ELAAEWISKKIGGE-GEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQNADWDR 243 Query: 194 SKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDI 253 +K K++ E +IK N+ ++ +ND M +G +A+ + DIL +DG+ + Sbjct: 244 AKAKDLAEIWIKKY---PNLKAIFCNNDVMALGVQEAVNASKR----DILVVGVDGIKEA 296 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 Y+++ GE +A+V+ P G + G ++ T L E Sbjct: 297 YESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVIWTPQALIDSTNVNE 351 >UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQX4_9FIRM Length = 409 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 103/289 (35%), Positives = 152/289 (52%), Gaps = 12/289 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 +++GF+QVG ES WR A T A+ +E G L D Q++AVR F+ Q VD Sbjct: 101 ISIGFAQVGHESDWRTASTKSAQDVFSEANGYELSFVDCDNDSAAQLEAVRGFIQQDVDY 160 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I I P+V+TGW+ VL E +DA IPV ++DR+ID DK Y++ V ++ EG G+WL Sbjct: 161 IIIDPIVSTGWDTVLTECEDAGIPVIVIDRTIDDSDK--YVSWVGSNFKDEGLACGEWLK 218 Query: 143 KEVNGKP---CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 + K N + ++G+ GAS I R GF E I+ SQSGDFT + G+EV Sbjct: 219 AYADAKGMGEINALVIEGSTGASATIGRTDGFKEIADKY-GWTILDSQSGDFTEAGGQEV 277 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG--KDILTGSIDGVPDIYKAM 257 MESF ++ +V ND+ GA+ A+ AG+ G D++ S D + + Sbjct: 278 MESFCQSYAG--QFNVVICQNDNEAFGAMTAMDNAGVSYGVDGDVVLVSFDANKPALQLV 335 Query: 258 MDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 MDG+ A+ E P MA P + + + + G PEK + + + Sbjct: 336 MDGKITANFECNP-MAAPFVEQVIQQLQAGETPEKEIYMDESWFAAEDI 383 >UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0P6G6_9FIRM Length = 355 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 127/334 (38%), Gaps = 29/334 (8%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR------GITLKI 58 LL+ S + S P+ +G + + + + A+ R ITL I Sbjct: 24 LLLPSGCADKPSESMTPDPIRIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITLNI 83 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 DG Q Q + V F+AQG DAI + V T ++ +A+ A+IPV +R +D Sbjct: 84 LDGTGNQGTQNEQVDRFLAQGYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVGED 143 Query: 119 KSLY--MTTVTADNILEGKLIGDWL----------VKEVNGKPCNVVELQGTVGASVAID 166 + + V +D G + G + V V L+G G A Sbjct: 144 MQRWQNVYYVGSDPREAGDMQGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDATL 203 Query: 167 RKKGFAEAIKNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 R + A+ +A +++ + S+ ++ R++ M ++ E I +++ +NDDM + Sbjct: 204 RTESCIAALTSAGIDVEKLASEPANWQRAQASAKMAQWLADEELRDRIEVIFCNNDDMAL 263 Query: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK 285 GAI A A + + + ID P A+ DG +V A L Sbjct: 264 GAIDAYHAA--EISELPVIVGIDATPPALMAIQDGSLAGTVRNDAQGQAQAIFDLAYALS 321 Query: 286 DGTMPEK--------LTLTKSTLYLPDTAKEELE 311 G P++ ++ +E + Sbjct: 322 TGANPQEAVPMLEGQYVWAPHSIVTIGNVMQEYD 355 >UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Actinomycetales RepID=A6W806_KINRD Length = 362 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 11/286 (3%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 L VG S S + A + AE +GI L Q V +V GVD Sbjct: 50 KKLRVGVSVYDMSS-FITAGKEGMDAYAEAKGIELLWNSANLDVNTQASQVDQYVNAGVD 108 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI + PV A +P + AK A IP+ ++ ++ D + V D++ G+ + Sbjct: 109 AIIVVPVQADSLQPQVASAKAAGIPLLAVNAELNSTDIA---GNVQPDDVAAGEAQMQMM 165 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + GK +V LQG +G S ++R KG + P+I+++ + ++ R + ++ Sbjct: 166 ADAIGGKGG-IVVLQGPLGQSGELNRTKGIENVLAKYPDIEVLAKDTANWKRDEAVNKVK 224 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 ++I A G I V A NDDM +GA+QA+KE+G+ + IDG+ D A+ GE Sbjct: 225 NWISA--FGARITGVVAENDDMGLGALQALKESGVT----LPVVGIDGIEDGLNAVKSGE 278 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 ++ + A A+ +G + K + Sbjct: 279 FIGTMLQNGTVELSAGLAVAAAIANGEDVNTEPVYKMPKITKENVD 324 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 110/307 (35%), Gaps = 16/307 (5%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66 I A S A P+ +G + S + + E+ A+S + G + + + Sbjct: 24 IGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANEDVQ 83 Query: 67 NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126 Q + F+ GV I I G P +K A A IPV +D + Sbjct: 84 TQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQ-----SKNATVNI 138 Query: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 T DN G++ L ++ GK + L GT S DR G + P+IKI+ Sbjct: 139 TTDNKQAGEISCRSLADKLGGK-GKIAILNGTP-VSAVDDRVTGCKGILGQYPDIKIVAD 196 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q G+ +R + + A ++ +A ND +G A ++ G ++ S Sbjct: 197 QRGENSRDSALPIATDILTAN---PDLDGFFAINDPSAVGVQLAAEQKGAS----VVITS 249 Query: 247 IDGVPDIYKAMMD-GEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 +DG A+ G A+ P + A D +K+ L + L Sbjct: 250 VDGASSATDAIAAGGLITATAAQDPAALMRQAIDLGISIVNGKEPDQKVILVPTELVDAS 309 Query: 305 TAKEELE 311 + Sbjct: 310 NVAKYKP 316 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 15/313 (4%) Query: 1 MWKRLL---IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLK 57 M LL + +A+ + A+ + ++ + AE AK++A + G T Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 +A Q + + + +A+ AI + + LK+AK A IP FL+DR I+ Sbjct: 61 VASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREIN-- 118 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + ++ + ++N +L + V + GK +EL G + A R +G+ + I Sbjct: 119 ETGIAVSQIVSNNYQGAQLGAEKFVTLMGGK-GKYIELLGRESDTNAHVRSQGYHDVIDE 177 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 ++K++ Q+ ++++++ MES ++A +I V + ND M +GA A+K AG Sbjct: 178 HSDMKMVAQQTANWSQTEAFNRMESILQAN---PDITGVISGNDTMALGAEAALKAAGRN 234 Query: 238 PGKDILTGSIDGVPDIYKAMM-DGEANASVELTPNMAGP-AFDALEKYKKDGTM-PEKLT 294 D++ DG + +++ +G A+V A ++Y K G E+ Sbjct: 235 ---DVVVVGFDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTGLEEKQ 291 Query: 295 LTKSTLYLPDTAK 307 L L + AK Sbjct: 292 LMDCVLIDENNAK 304 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 132/313 (42%), Gaps = 9/313 (2%) Query: 2 WKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIAD 60 + L + + + + +G SQ WR + +EA+K I + D Sbjct: 19 FLILFSLIIIENIRMKNSDSVEYVIGMSQANLYEPWRISMNEEISNEAKKYKNIKIVYKD 78 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q K + + G+D + ++ + PV+ +A + +PV +LDR+++ + Sbjct: 79 AGGDTNKQKKDIDELLNSGIDLLIVSINDSEKLTPVVSKAYKS-VPVVVLDRAVEGYN-- 135 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 Y + DN G+ G +V + V+E+QG + + IDR KGF EAIK N Sbjct: 136 -YSVYIGPDNEKIGREAGKMVVDLLGNSEGRVIEIQGLLNSHPDIDRSKGFREAIKQCDN 194 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IKI+R+ G++ + + ++ +E +K + NI +++AHND M +GA +A + G+ K Sbjct: 195 IKIVRTVIGEWQKDEAEDKIEELLKEDR---NIDIIFAHNDYMALGAYKAAYKLGINNIK 251 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL 300 I + G + G + + A D+ K + KS Sbjct: 252 IIGVDGLTGENGGLDLVSRGILQGTFTCS-TGGKEAVDSALNILNKKKKIPKKIVLKSDK 310 Query: 301 YLPDTAKEELEKK 313 E L K Sbjct: 311 ITKSNVNEYLNDK 323 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 116/289 (40%), Gaps = 12/289 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAE---KRGITLKIADGQQKQENQIKAVRSFVAQ 78 F + + + + A++ A I + E QI+ V + Sbjct: 54 KTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITD 113 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G DAI I P +TG P +++A A IP+ + D +T + DN G +G Sbjct: 114 GADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGD---VLTWIGVDNYTVGYELG 170 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 L + + G VV ++GT G S + +R G+ +A KN P I+++ SQ DF R KG Sbjct: 171 TALCEALEG-TGKVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNREKGMT 229 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 VME+F++ I V + N DM +GAI+A K G K+++ + D D A+ Sbjct: 230 VMENFLQRY---PEIDGVGSINKDMTMGAIEACKAVGRD--KEMVQVTFDVDNDCLDAID 284 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 G+ + +G TL D Sbjct: 285 AGDILITGAQEEKSQIANAIYACLLACNGYKVAPEQYIPMTLVTKDNTN 333 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 13/291 (4%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA----DGQQKQENQIKAVRSFVAQ 78 P+ + + A A++ + + + Q+ +++F+ Q Sbjct: 42 PIELAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQ 101 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 GVD + A A V ++A D I V +D D + +++ + DN+ + Sbjct: 102 GVDGLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPV--FATDNVAAAERAT 159 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 ++LV+++ V + G + R +GF +K P +K++ QS + ++ + Sbjct: 160 EYLVEQLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQSSESNYNRALQ 219 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 V E + A ++ +YA N+ V+GA +A++ AG +I+ D PD KA+ Sbjct: 220 VTEDILTAH---PDLDAIYAANEPGVLGAAEAVRSAGKAG--EIIIVGWDTAPDELKAVR 274 Query: 259 DGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 +G +A + P G +A K + G E T + L + + Sbjct: 275 EGVVSALIAQNPFRMGYDGVNAAVKMIRTGEQVEGG-DTGAILVTRENIDD 324 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 13/301 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 L + + A + VG S + + + K EA K+ +T+++ G+ Sbjct: 16 LCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAGEFD 75 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 Q + ++ Q V AI + P + G P + A A+IPVF D ++ Sbjct: 76 LARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKE---GAVVS 132 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + +DN+ G+L G++ K +NG+ V + I+R +GF EA+K PNI+++ Sbjct: 133 HIASDNVAGGRLAGEYAAKRLNGR-GQVAIID-QPYIQSVIERVRGFEEALKPYPNIRVV 190 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 +GD R + + E ++++ + V+A ND+ G + AI+ AG K I Sbjct: 191 ARLTGDGVRDRSLKAAEDLLQSQR---KLDAVFAVNDESAFGVVSAIEAAGRKG---IFV 244 Query: 245 GSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 D + K + G+ A + P G G E + L Sbjct: 245 MGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVD 304 Query: 303 P 303 Sbjct: 305 K 305 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 125/300 (41%), Gaps = 15/300 (5%) Query: 18 MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFV 76 +GFSQ + +RA + + + L IADGQ Q+ V +F+ Sbjct: 44 CGPNKSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFL 103 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 Q VD +F++ A P + D IPV LDR + + + V+ DN Sbjct: 104 TQQVDILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEK---FTSFVSGDNRAIAHE 160 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 G + + +V L+G +S AI+R +GF I P +KII Q D+ + K Sbjct: 161 AGLYAASLL-PDGGDVAILEGLPSSSPAIERLEGFKAGISTNPKVKIIAVQPVDWMQDKA 219 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP---DI 253 EV + ++A +I +VY ND GA A+K+AG + DG+P Sbjct: 220 VEVFSAMLQAH---PDIKLVYTSNDLAAAGAYIAVKQAGKLG--QVKIIGTDGLPGPSGG 274 Query: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKD-GTMPEKLTLTKSTLYLPDTAKEELEK 312 +A+ +G+ A+ P A A D +K D + +L + AKE K Sbjct: 275 IRAVAEGQWTATYV-YPTGAAEALDLAKKILIDCASSVPRLVTVPTQRIDASNAKELYAK 333 >UniRef50_C2HAH9 ABC superfamily ATP binding cassette transporter, binding protein n=16 Tax=Enterococcus RepID=C2HAH9_ENTFC Length = 338 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 160/332 (48%), Gaps = 26/332 (7%) Query: 1 MWKRLLIVSAVSAAM-------SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 M + L ++ + A ++ PL VGFSQ G+ES WR T + EK Sbjct: 1 MKRVLFFLALIVIAYQMMGCTPNTKEAPDPLVVGFSQSGTESSWRKKHTESIITALEKED 60 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 + +G QE QI+ +R+F+A VD I P+ +GW+ VLKEAK AEIPV L++R Sbjct: 61 YQVLYRNGYMNQERQIQDIRTFIAYKVDMIIFTPLQESGWDSVLKEAKRAEIPVILVNRH 120 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEV---NGKPCNVVELQGTVGASVAIDRKKG 170 I D L++T + EG G ++ + ++EL G+ ++ R +G Sbjct: 121 IQTNDPELFVTHIGPSFKAEGNRAGLFVSNHFTNSKKQEIRILELAGSENSTPTKLRSEG 180 Query: 171 FAE------------AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA 218 F E I + P + I+ GDF R KGK+ M+ +++ + I ++Y+ Sbjct: 181 FLESINRKPTLKKDGTIDHKPPMTIVHRIVGDFIRMKGKDQMKRYLETN-DLSEIDVLYS 239 Query: 219 HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFD 278 H+D+M GA+ AIKE +KPG+D++ +IDG D+ + + G N VE P++ + Sbjct: 240 HSDEMTHGALAAIKETSIKPGEDLIIVTIDGQEDMIENLRSGIVNCVVECKPDVGWYVAN 299 Query: 279 ALEKY---KKDGTMPEKLTLTKSTLYLPDTAK 307 + +Y + G K T++ Sbjct: 300 TVTRYFGNLQTGKTLPKDIFISETVFSQQNIA 331 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 31/321 (9%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSE--AEKRGITLKIADGQQKQENQIKAVRS 74 + VG + G ++ + N K + + L + DG+ Q + Sbjct: 46 AQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNNQFET 105 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 + Q D I P+ + +A +A IPV + ++ ++ V +++++ G Sbjct: 106 MITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDKL---LSYVGSNDVIAG 162 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 + +V + GK NVV L+G +G S ++R++G + PN+K++ ++ +++R+ Sbjct: 163 AMQAQAVVDAMGGK-GNVVILEGPIGQSGQVERRQGNLSVLAKYPNVKVLEMKTANWSRA 221 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 + + E+++ A I + ND+M +GAI+A+K GL P K I T IDGV D Sbjct: 222 EALSLTENWLTAHAG--KINGIIGQNDEMALGAIEAVKAKGLDP-KTIPTAGIDGVSDAV 278 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL--------------------- 293 +A+ G ASV + + K G + Sbjct: 279 RAVKAGIM-ASVLQDASAQSQGALDVLLRKLIGASYKPRSAMWAQYGAAGLQWDDGAARA 337 Query: 294 TLTKSTLYLPDTAKEELEKKK 314 T A L ++K Sbjct: 338 YNIPWTPITLQNADALLAQRK 358 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 151/328 (46%), Gaps = 27/328 (8%) Query: 3 KRLLIVSAVSAAMSSMA---LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK 57 +R+LI+SA A + + A A + +GFSQ S S R T ++ A + + L Sbjct: 6 RRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDVDLI 65 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + + + K QI V S + QG+ + I+ + P +K+ A IPV L+RS+D+ Sbjct: 66 VTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERSLDIP 125 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 V N G L G ++ + + GK NVVE++G + A++R +GFAEAI Sbjct: 126 ----VTLHVGPHNKPIGTLAGKYIAEALKGK-GNVVEIKGDPAVAPAVERHEGFAEAIA- 179 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 IK+I D+ + K + ME ++ G I VYAHND+M GA++AI+ AG Sbjct: 180 GTEIKVIAETHADWDQEKALKFMEDTLQRFPAG-QIQAVYAHNDNMAFGALRAIQAAGRD 238 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKD--------GTM 289 + IL IDG +A+ G+ A+ + +A A + GT+ Sbjct: 239 K-EGILIIGIDGENAAIRAVAKGDLTATFTYS-TVAPEGVIAAHALATNDTAALEKLGTL 296 Query: 290 PEK-----LTLTKSTLYLPDTAKEELEK 312 +K S + + A E K Sbjct: 297 TKKDDGSMEIEIASKMITKENAAEFFCK 324 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 134/316 (42%), Gaps = 21/316 (6%) Query: 1 MWKRLLIVSAVSAAMSSMA-------LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG 53 + K L++++A +S + A V + ++ + A+++A + G Sbjct: 2 LRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELG 61 Query: 54 ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 113 I L + D E Q + V+ GV + P + P + + + IP +DR+ Sbjct: 62 IDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVDRT 118 Query: 114 IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAE 173 I D + ++N G L K + + V+ L+G G+S + +R +GF + Sbjct: 119 ITGAD---VAALIDSNNTEGGAAAASVLAKAIRAQ-GEVIVLRGIEGSSSSAERYEGFTQ 174 Query: 174 AIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 A+ P ++I+ +++ DF R ++++ + ++ ++A ND+M +GA+ A+ Sbjct: 175 AMAEHPRVRIVAAEAADFDRDTARDLVTDLLADH---PDVAGIFAENDEMALGAVDAL-- 229 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKL 293 G + GKD+ DG + +A+ + + A++ + G DG E Sbjct: 230 -GERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGKLLDGEAAES- 287 Query: 294 TLTKSTLYLPDTAKEE 309 T + D ++ Sbjct: 288 VHTPVMVVTRDNIEKY 303 >UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B51147 Length = 354 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 19/310 (6%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIADGQQKQENQIKA 71 A + +T+GF+ ++ GW A AK A++ ++L +G QI Sbjct: 49 AGAADKKRGKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQ 108 Query: 72 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNI 131 + + + + VD + I P V +A ++ IPV LDR Y + DN Sbjct: 109 IETLINKKVDVLVILPADGKALTQVGLKAMESGIPVVNLDRVFASPQA--YRCWIGGDNY 166 Query: 132 LEGKLIGDWLVKEVNGKP-CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 G G ++ +++ GK VVEL G + R GF +A+KN PNIK + Q+ + Sbjct: 167 GMGLNAGRYIGEQLKGKKNAKVVELAGLDNLELTRQRTAGFDDALKNYPNIKKVGRQAAE 226 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 FT G+ M ++A + ++ H+DD +GA +AI++AG D L G Sbjct: 227 FTVESGQSKMAQLLQAHS---GFDALWNHDDDQGVGAERAIQQAGR---DDFLMVGGAGA 280 Query: 251 PDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKD---GTMPEKLTLTKSTL----Y 301 A+ A+V P MA A D + G + E TL Sbjct: 281 KRAMDAIKADNTVLKATVLYPPTMAASAIDLARALGQGNGVGGLAELEIPASLTLYSAVV 340 Query: 302 LPDTAKEELE 311 + E L Sbjct: 341 TKENVDEYLP 350 >UniRef50_C7GGA9 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGA9_9FIRM Length = 378 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 12/302 (3%) Query: 11 VSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV-AKSEAEKRGITLKIADGQQKQENQI 69 + SS A +T+GF+QVG ES WR A T+ + G L+ D Q+ Sbjct: 58 AAGTESSAASGDTVTIGFAQVGHESDWRTASTDSCLSVFSADNGYDLQFVDCDNDSAVQL 117 Query: 70 KAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTAD 129 +AVR F+ Q VD I I P+V+TGW+ VL E ++A IPV ++DR+ID DK Y++ V ++ Sbjct: 118 EAVRGFIEQDVDYIIIDPIVSTGWDTVLTECEEAGIPVIVIDRTIDDSDK--YVSWVGSN 175 Query: 130 NILEGKLIGDWLVKEVNGKPC---NVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186 EG G+WL + K NV+ ++G+ GAS I R GF E I +A I+ S Sbjct: 176 FKTEGLAAGEWLKAYTDAKGISDVNVLVIEGSTGASATIGRTDGFKE-IADANGWNILDS 234 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG--KDILT 244 Q+GDFT++ G+EVMES+IK+ +V ND+ GA+ A+K AG+ G D++ Sbjct: 235 QTGDFTQAGGQEVMESYIKSYEG--KFNVVVCQNDNEAFGAMDAMKAAGISYGVDGDVIL 292 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 S D + +M G+ NA E P +A P + + K + G PEK ++ + Sbjct: 293 VSFDACTAGLEYVMSGDINADFECNP-LAAPFVEEVIKRLQAGETPEKEVYMTEHWFVNE 351 Query: 305 TA 306 Sbjct: 352 DV 353 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 13/291 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 +GFS + E+ + + K E + + L + D + + Q ++ + +G++ Sbjct: 59 ESWKIGFSGIDMENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGIN 118 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AI ++PV P L+ K+A++ + +D + K+ + +DN G L G+ L Sbjct: 119 AIILSPVDWEKITPSLEALKEADVKIVNVDTQV--KEMDYVDAYIGSDNYNAGVLCGEDL 176 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQSGDFTRSKGKEVM 200 +K V L+ + +R GF E + A N +I+ + K E Sbjct: 177 IKRC-PDGGKVAILEC-PTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAA 234 Query: 201 ESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM-- 258 + + + +I + ND M +GA A+ + IL +DG PDI K + Sbjct: 235 QKILSENS---DIVAIMCGNDQMAVGAKTAM---NVAEQGQILIYGVDGSPDIKKELKKT 288 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + + +V +P G +G EK + + Sbjct: 289 ENQIAGTVAQSPISMGKDAANTVLNILNGKDYEKEIKENVFMINQENVDMY 339 >UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_BACFN Length = 917 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 134/322 (41%), Gaps = 20/322 (6%) Query: 5 LLIVSAVSAAMSSMA----LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIA 59 L+ + +S +SS +GFSQ S+S WR A + EA + L + Sbjct: 11 FLLFAGLSIFLSSCQPKEEGDKKYVIGFSQCTSDS-WREAVLLEMQIEASNYRNVELVVY 69 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 + Q+ +R ++Q VD + I+P A V EA IP + DR I + Sbjct: 70 NAMDNSSRQVSQIRKLISQNVDVLIISPNEAVPITDVAVEAYRKGIPTIIHDRKIQSDE- 128 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Y ++ A+N G IG+++ ++ ++E+ G G+S A++R GF + +++ Sbjct: 129 --YTVSIGANNYNIGSAIGEYINGQLPPNS-KILEIWGLEGSSPAMERHDGFIDHLRSDK 185 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 N + + G + + + + +I +VYAHND M + A I + G Sbjct: 186 NFQ-VTQVFGKWHYNSAYDAVNRL----ATFADIDLVYAHNDVMALAARDVIMKRDSVSG 240 Query: 240 KDILTGSID---GVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 K I ID G +A+ D + AS P + + +G +K + Sbjct: 241 KRIRFIGIDGVYGDGAGLQAVADEKLEASF-QYPTGGAISIQVAMQII-NGEKVKKNYVL 298 Query: 297 KSTLYLPDTAKEELEKKKNMGY 318 + + AK L + + + + Sbjct: 299 NTAIINRGNAKTILAQSEQLNH 320 >UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RQG9_9CELL Length = 328 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 115/288 (39%), Positives = 170/288 (59%), Gaps = 13/288 (4%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEA-EKRGITLKIADGQQKQENQIKAVRSFVAQGVDA 82 + VGFSQ+G+ESGWR A T K+ E+ G L D QQKQENQIKA+R F+AQ VD Sbjct: 46 IRVGFSQLGAESGWRTANTESVKASLSEENGFDLTFVDAQQKQENQIKALRDFIAQDVDV 105 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 I +PV+ TGW+ VL+E KD+ IPV L+DR++D Y+T + AD EG G+W+ Sbjct: 106 IAFSPVIETGWDEVLQEIKDSGIPVVLVDRTVDTTVDDPYVTWIGADFKAEGTTAGEWVK 165 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 + N + ELQGT+G+ +DR++GF E + + +II SG+FTR++GK +E+ Sbjct: 166 E--NAPDAKIFELQGTLGSGAQVDREEGFGEVVGD----QIIGKASGNFTRAEGKTAVEA 219 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 ++A ++ M++ HNDDM +GAI+AI+ AG KPG DI S+DGV D +A++D + Sbjct: 220 ALQAY---PDMTMIFTHNDDMGLGAIEAIEAAGKKPGVDIQIVSVDGVRDGLQALVDKKF 276 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK---STLYLPDTAK 307 N VE P + +EK +P++ + + Sbjct: 277 NYVVECNPVFGDQLAELIEKVAAGEDVPKETIVIDKAFDQTITQEEVD 324 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 130/310 (41%), Gaps = 12/310 (3%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLKIA 59 M ++ + A A + F+Q + +R A+ + E + ++ + Sbjct: 1 MNTIRMLRVLLLAFCLPAVAAENKVIAFAQDTMANDFRRAQVYEVRDEVARYPQLSFVYS 60 Query: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 D Q + I+ + F+ Q VD + + PV+ +A A IPV +LDR I+ K Sbjct: 61 DAQGQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQ- 119 Query: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 + + + +DNI G++ +++ +NGK V+ +G A V R KGF I Sbjct: 120 --FTSFINSDNIRIGEIGAEYIASRLNGK-GLVLLFEGLQKADVTQLRSKGFLTEIGKHS 176 Query: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 I++I ++G++ R ME + +G + +++ +D M+ G + ++ + P Sbjct: 177 GIRVI-RRTGNYLRKDAVVEMEKLVS---DGIRVDAIFSESDSMLSGVRMVLSKSNIDP- 231 Query: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 + ++ D + +A+ DG + SV P A + K G K Sbjct: 232 RSVVMVGCDYTSEARQAIRDGTQSGSVL-FPLGGKKAVEIALKIFA-GESVPKHIYNPVK 289 Query: 300 LYLPDTAKEE 309 L D ++ Sbjct: 290 LVTKDNVEQV 299 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 17/286 (5%) Query: 30 QVGSESGWRAAETNVAKSEAEKR---GITLKIAD----GQQKQENQIKAVRSFVAQGVDA 82 E+ N + AE G L + G+ +E Q+ ++ V +GV+A Sbjct: 98 VKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEGQLSILKDQVRKGVNA 157 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLV 142 + ++P+ P ++ A +A+IPV+ ++ + D V +++ +G+L +W+ Sbjct: 158 VLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM-----FVGPNSLEQGQLAAEWVN 212 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDFTRSKGKEVME 201 +++ G +V + G +V +R +GF E + +I+++ Q+ D+ RS+ K+V Sbjct: 213 EKLGG-SGDVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAKQNADWDRSQAKDVAA 271 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 +F+K ++ ++ +ND M +G I+A+KEA L KDI DG + Y ++ E Sbjct: 272 TFLKTY---PDLKAIFCNNDVMALGVIEAVKEADLTLNKDIYVIGCDGQSEAYDSIRANE 328 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 A+++ P G + G ++ T S + Sbjct: 329 MAATIDTFPYYEGYMAAEVCYRSLIGQTVPRVVFTPSKMLDSTNVD 374 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 108/319 (33%), Gaps = 15/319 (4%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD-GQQ 63 L + A T+ + G+ A+ A++ G+ L + Sbjct: 13 TLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGGPEF 72 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK------ 117 QI + + +A+ DAI IAP LK A +A I + +D I Sbjct: 73 SPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTG 132 Query: 118 --DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 + + V +DN+ G++ L K + G+ V G S R++GF E + Sbjct: 133 KGNADFPLAYVASDNVEGGRIAARALAKAI-GEKGKVYVSNVKPGISTTDQREQGFKEEM 191 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 K P I ++ +Q D +K + + + ++ V+ N IGA +K AG Sbjct: 192 KKYPGITVLATQYNDNDANKAASQLAAALARN---PDLAGVFGANLFSAIGAANGVKNAG 248 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 + + + D I + G + +V P G +G Sbjct: 249 KRGA--VKVAAFDCPESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRYG 306 Query: 296 TKSTLYLPDTAKEELEKKK 314 T T+ K Sbjct: 307 TGYTVIDRANVDSAEAKAA 325 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 11/291 (3%) Query: 19 ALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ 78 A G + + + + N K E G L D + Q + + + Q Sbjct: 36 ATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGDVLITLDPILDVDKQNEQILDLIDQ 95 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 VDAIF+ P+ A E LK AK A+IPV ++D I D+SL ++ ++N G L Sbjct: 96 RVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPI--YDESLVNCSIASNNYDAGVLCA 153 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 ++ + ++ L+ A A++R +GF + I + N ++I D Sbjct: 154 KDMMSK--RDHAKIILLEH-ATAKSAVERIQGFLDTIASNANYQVINRADCDGQIEIAMP 210 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 M+ +K ++ +V A ND +GA+ AI+ ++L +DG PD+ + + Sbjct: 211 TMKQMLK---ETPDVDVVMALNDRSALGALAAIESM---EIDNVLVYGVDGSPDVKELIN 264 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 G A+ +P G K + EK L D Sbjct: 265 TGLIQATAAQSPVKMGQLAYQKAKALLENKKIEKKIEVPVELISRDNISNF 315 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 10/289 (3%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQGVD 81 L + G+ + + A + + + + + + Q+ V SFVAQGV Sbjct: 41 LRIAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVS 100 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 I +AP+ AT ++ A+ A+IPV + D + D +++ V DN G+L G+ L Sbjct: 101 GIVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDD---HVSFVATDNEAAGRLAGEHL 157 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS-QSGDFTRSKGKEVM 200 K + G+ VV L+ G++ R+KGF +A++ P + + Q G T Sbjct: 158 GKAI-GEDGKVVVLRYQEGSASTQHREKGFLDAVRAMPGVTVASENQYGGATTESAFHKS 216 Query: 201 ESFIKAENNGKN-ICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 259 ES + A+ + I V+ N+ G +QA+++ + + + D + A+ + Sbjct: 217 ESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNVA--RKVKFVGFDASEKLLGALRE 274 Query: 260 GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 G+ A V P G G T S + + Sbjct: 275 GDIEALVVQNPFNMGYVAVKTMVAHLHGEKVAARIDTGSRVVTRQDLDD 323 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 11/317 (3%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + L ++ A+ A LT+G S + S + A T + + G+ + Sbjct: 14 IMLILGLLPAILPACGFSESHHKLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVS 73 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR----SIDV 116 ++ ++ Q+ V + + QG+D + + P + +L+ A A IPV ++DR + Sbjct: 74 AEEDEQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQ 133 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + Y+ + +N G I + L + G + L G G SVA RK G A+ Sbjct: 134 NKNADYVAFLGPNNEKAGSGIAEAL---MAGGGSKFLALGGMPGNSVAQGRKAGLESALT 190 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + ++++ Q + KG E+ ++A G + ++ ND + GAI+A+ A Sbjct: 191 AVGH-RLVQFQYAGDSEDKGLAAAENMLQAHPAG-DANAIWCFNDKLCQGAIKAVYNANR 248 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 + K+ + G +D P A+ +G S+ G L + E++ Sbjct: 249 E--KEFIFGGMDLTPQAIAAIENGLYTVSLGAHWLEGGFGLAILYRKIHGQDPAERMVKL 306 Query: 297 KSTLYLPDTAKEELEKK 313 + + Sbjct: 307 DLLKVDKSNVAKFKARY 323 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 109/286 (38%), Gaps = 10/286 (3%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 L G + + + + + + +G L D Q Q+ Q + ++ + +G+D Sbjct: 26 KQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDPLQDQKKQNEQIKDMINEGID 85 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 +F+ PV P L+ K IPVF++D + D ++T+ +DN G + Sbjct: 86 VLFLQPVDRNKVRPALELCKKKHIPVFVIDSEV--SDTEAVVSTIVSDNYDAGVQCAKDM 143 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 +K+ N++ + + +R KGF + IK P KI+ + +VME Sbjct: 144 MKK--KTSANIIIVN-QKALNSINERVKGFRDTIKGHPQYKIVEEKESAAEFEIAMKVME 200 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 I KN +V ND + +G I A++ ++ +DG PD + G Sbjct: 201 KII---YEKKNYDVVMGGNDPIALGCIAAMQMTDKT--DQVMVYGVDGSPDGKAMIKAGF 255 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 + +P G G +K L D K Sbjct: 256 LEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVTIPVELITADNLK 301 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 128/300 (42%), Gaps = 10/300 (3%) Query: 17 SMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV 76 +++ +G + ++ + + E+ + L + D Q QI +++F+ Sbjct: 48 TVSEGDSFLIGVASPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFI 107 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY----MTTVTADNIL 132 A+G D I + PV P+ E +AEIP+ +DR + D +T V D++ Sbjct: 108 AEGCDLIIMMPVQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVE 167 Query: 133 EGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKIIRSQSGDF 191 G+ G+ LV ++ G ++ +QGT+GAS + R++G E + P I+I+ +Q+ D Sbjct: 168 GGRKQGE-LVHQLLGDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQ 226 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 +S+ V ++F+ G I + A + +GA+ AIK A D Sbjct: 227 DQSQAITVTQNFLTRFAKG-EIDAIVAQDPYSALGAVDAIKSASRDELLG-TVIGYDLPS 284 Query: 252 DIYKAMMDGEANASVELTPNMAGPAFDALEK--YKKDGTMPEKLTLTKSTLYLPDTAKEE 309 ++ ++ + S P G + + E T T+ + + A+E Sbjct: 285 EVLDSIKAKDMYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIENAREY 344 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 16/305 (5%) Query: 5 LLIVSAVSAAMSSMALAAP-LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-- 61 L+ S V + + + VG + + A+++A+K G L G Sbjct: 16 LMAGSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAF 75 Query: 62 QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL 121 E Q+ A+ + V QGV I I P +TG +K+A+DA + V LD + D +D Sbjct: 76 DGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDA-- 133 Query: 122 YMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI---KNA 178 T DN G G W+ + P VV L GT G +V R GF E N+ Sbjct: 134 VDATFATDNKAAGVAQGKWVKAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLTDNS 193 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P +I+ ++ + ++K + ME+ ++ + +Y N+ GA QAI+ G Sbjct: 194 P--EIVGQENTNGDQTKAQTAMENLLQR---APGVNALYTINEPAAAGAYQAIQAVGRA- 247 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTK 297 + GSIDG + G+ A+V P A+ K+ +DGT P T Sbjct: 248 -DQVTIGSIDGSCTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDTG 306 Query: 298 STLYL 302 S L Sbjct: 307 SELIT 311 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 134/306 (43%), Gaps = 17/306 (5%) Query: 15 MSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRS 74 ++ T+G S S + A + K A G L + + Q+ V++ Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEG 134 V Q V A+ A AT + EAK A IPV +D+ T + +D++ Sbjct: 79 LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQGD----VTTFIGSDSVKAS 134 Query: 135 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRS 194 + D+L K++ GK N+ ++G +G+S I+R KG ++ P+IK++ + + D+ + Sbjct: 135 TELCDYLAKQMGGK-GNLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDEN 193 Query: 195 KGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIY 254 K V + + A + ++A ND M +GA +A +AG ++ S+DG P +Y Sbjct: 194 KAYNVAQDVLTAN---PELQAIFAQNDGMALGAAKAAAQAGRS---NLKIVSVDGFPQVY 247 Query: 255 KAMMDGEANASVELTPNMAGPAFDALEKYKKDGT--MPEKLTLTKSTLYLPDTAKEELEK 312 A+ G+ A++ P G G +K L + L + LE+ Sbjct: 248 DAIESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKEN----LEE 303 Query: 313 KKNMGY 318 ++ GY Sbjct: 304 ARSAGY 309 >UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMU2_9FIRM Length = 369 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 21/313 (6%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGV 80 + + ++ + A E AK A G++ + Q++ ++ ++AQ Sbjct: 49 GSDYHLAICIHSMDNEYWAQEAEGAKLAAASYGVSADVLTCDSDDNKQLQGIKDYIAQYG 108 Query: 81 D--AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTA---DNILEGK 135 D + P + + +++ V +L D Y V + D+I GK Sbjct: 109 DKAVFVVDPSSTANTANIAELCEESGNYVAILAHRADGLYPKDYPHFVASLMLDDIAIGK 168 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L + + G+ V ELQG +G A +R K F EA+K+ PNI+++ SQ+ +++S+ Sbjct: 169 ATAKALFESIGGE-GQVAELQGLLGDDSATNRHKAFEEALKDYPNIEVVDSQTASWSQSE 227 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 + E+++ ++ VY+ ND M +GA++A+K GL I+ DG+ Sbjct: 228 AMTLTENWLVKY---PDLKGVYSANDTMALGAVEALKNKGLNG--KIMVSGCDGIEAALN 282 Query: 256 AMMDGEANASVELTPNMA-GPAFDALEKYKKDGTMP------EKLTLTKSTLYLPDTAKE 308 A+ DG+ + M G + P E+L K+TL D A + Sbjct: 283 AVNDGDMVITNANNGYMIAGYGASYAIQAALGKLDPTTIPDNERLIFCKTTLVTKDNAND 342 Query: 309 ELE---KKKNMGY 318 ++ K KN GY Sbjct: 343 IIDKFIKTKNPGY 355 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 60/301 (19%), Positives = 115/301 (38%), Gaps = 12/301 (3%) Query: 10 AVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQEN 67 +V A ++ A LT G + + S + + A+ + G L + Sbjct: 37 SVPAESAADAPDDKLTFGLVVMSTNSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQG 96 Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 Q+ + + + VDAI + P+ + +++A DA IPV ++D +++ Y + + Sbjct: 97 QVSLMENLINSKVDAILLTPLDSDALAAPVEKAMDAGIPVIVIDSAVNTDK---YTSFIA 153 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 DN+ G++ + L++ + G VV + G R +G E I ++ Q Sbjct: 154 TDNVAGGRMAMERLIESIGG-SGEVVVVNALAGIPSNDARGQGAEEYAATVDGITVLPQQ 212 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 +++ E+ I N+ ++A + +GA QAI G +I + Sbjct: 213 HCL-DQAEAMTATENVIIGN---PNLKGIFATFNRGALGAAQAIVSKGKAG--EIKMVAF 266 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 D D K + DG +A V P G +G K + + D Sbjct: 267 DADADEIKLLEDGTIDALVVQQPYEMGKIGIEYAVKALNGEEVPKTVAPEVVIATKDNMN 326 Query: 308 E 308 + Sbjct: 327 D 327 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 10/294 (3%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 S+ + + G + + + + + + +S E G L D + Q++ + F Sbjct: 36 SARQIGSRKKFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEF 95 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 + V AIFI PV +P L AK+A IPV ++D + D L TV +DN G Sbjct: 96 IKLKVKAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPV--YDDKLVACTVISDNYDAGV 153 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 +L+K + N++ ++ + A IDR KGF + I + KI+ + + K Sbjct: 154 QCAKYLMK--SKSKANIMLIEHSK-AKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQLDK 210 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 +++ IK N+ + A ND +GA+ A+KE GL ++ +DG P+ Sbjct: 211 TMSLVDDLIKKHT---NVDAIMALNDPSALGALAALKENGLLG--KVMVFGVDGSPEAKT 265 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + DG A+ PN G G ++ + +L + + Sbjct: 266 MIHDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDVIVPISLISKENLLKY 319 >UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM Length = 383 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 121/305 (39%), Gaps = 19/305 (6%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGI---TLKIADGQQKQENQIKAVRSFVAQGV 80 VG + ++ ++G + I DG Q Q + +F+ +GV Sbjct: 78 KKVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGV 137 Query: 81 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY------MTTVTADNILEG 134 D + I PV ++ + + A IP+ ++R D +++ + +T V D G Sbjct: 138 DVLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSG 197 Query: 135 KLIGDWL-------VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRS 186 G+ + V + V ++G A R + +A+++A + + Sbjct: 198 TFQGEMISDLGLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGLEVNCLSD 257 Query: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246 Q G++ + + ++++ + + G ++ +V+ +ND M +GA+QAI+ AG G DI Sbjct: 258 QVGNWQQDQAQQIVANALGQY--GNDVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLVG 315 Query: 247 IDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306 +D + + + ++ G +V + G + D A Sbjct: 316 VDALSEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYITGAGNDHYIGCDYVKVTKDNA 375 Query: 307 KEELE 311 ++ L+ Sbjct: 376 QDVLD 380 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 21/316 (6%) Query: 3 KRLLIVSAVSAAMSSMALAAP--LTVGFSQVGSESGWRAAETNVAKSEAEK---RGITLK 57 + ++ +AV A +++ + AA +VG + + + A A+ A+K G+ + Sbjct: 4 RYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGVKVT 63 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + Q+ + +F+A VD I + G EPVLK+A+ A I Sbjct: 64 TVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGIA-----VVAVDV 118 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 TV +DN + G ++ +++ G+ NVV + G +V+ R G + + N Sbjct: 119 GAVGADATVMSDNAMAGAESCKFMAQQLGGR-GNVVIVNGPPVTAVS-ARVAGCKKVLGN 176 Query: 178 APNIKII-RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P IK++ +Q +R G E M + + A K I V+A ND IGA A+K+AG Sbjct: 177 YPGIKLLSDNQDAHGSRDGGMETMANLLTAH---KKIDAVFAINDPTGIGAELAVKQAGR 233 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGE--ANASVELTPNMAGPAFDALEKYKKDGTMPEK-L 293 K L ++DG PD KA+ D + S P + +G P K Sbjct: 234 SDVK--LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKRPAKSQ 291 Query: 294 TLTKSTLYLPDTAKEE 309 L + Sbjct: 292 VLLPTPAVTKANVASY 307 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 119/305 (39%), Gaps = 10/305 (3%) Query: 5 LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK 64 +L++ +S G + + + + + E G L D Q Sbjct: 15 MLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDILLTRDPLQD 74 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 QE Q + ++ + +G+ +F+ PV +P L ++A + + +D + KD+ ++ Sbjct: 75 QEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVV--KDRDSVIS 132 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + DN G+L ++K +V L + +R++GF + I + N +++ Sbjct: 133 IIETDNYQAGQLCALDMMKR--KDEAKIVILD-NPIQTSITNREQGFLDTIADNHNYQVV 189 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 ++ VM ++ + + ++ ND +GA+ A+++A + G +L Sbjct: 190 YREAAAGEIEVSSHVMADLLRRDIS---FDVILGGNDPTALGALAALQQARREEG--VLI 244 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPD 304 IDG PD + G + +P G DG EK ST+ D Sbjct: 245 YGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLDGEPVEKYISMPSTMITRD 304 Query: 305 TAKEE 309 E Sbjct: 305 NLHEF 309 >UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA89_MAGSM Length = 374 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 74/310 (23%), Positives = 126/310 (40%), Gaps = 13/310 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAA--PLTVGFSQVGSESGWRAAETNVAKSEAE-KRGITLK 57 M IV A++ +A A P VGF Q + WRAA+ + + + Sbjct: 69 MRTLPAIVMMTLYALAGLAHAQQPPWRVGFCQDTLDIPWRAAQAMTFSQTLQTDKRFQVI 128 Query: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 ++D + Q + V +GV + +P PV+ +PV LL R + Sbjct: 129 LSDAKGNTTQQAIDLEHMVERGVHVLVTSPRDGAVLTPVISNIYRQGVPVVLLSRRTLDE 188 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKN 177 + + T + D+ G+ +L K +N K ++ +QG AS R GF + + Sbjct: 189 N---FTTFIAPDDAEIGRQAARYLSKRLNEK-GKILVIQGLGSASTTQQRTVGFIQELSL 244 Query: 178 APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 P+++I+ ++ + +MES + + +Y H+D M +GAI A+K AG+ Sbjct: 245 HPHMQIVAQPFANYKKEMAILIMESILAQKLP---FDAIYVHSDAMALGAILALKRAGID 301 Query: 238 PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTK 297 P K + SID +++ GE +A + PN K G K Sbjct: 302 PTK-LPIVSIDYTRAGRESLRKGEIDA-IFTYPNGVKQGI-TAVKRILAGQPVNKFQTVP 358 Query: 298 STLYLPDTAK 307 STL + Sbjct: 359 STLVTQENIN 368 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 131/313 (41%), Gaps = 17/313 (5%) Query: 1 MWKRLLIVSAVSAAMSSMAL---AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRG-ITL 56 M K L + A +SS + L + F S+ + N + ++ G I L Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 57 KIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 ++QI+ ++ + GVDAI I P + +++A I V ++D ++ Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEA 174 D S ++ VT DN G+L L + + G+ VV L+ G++ DR +GF + Sbjct: 121 DG---SGHLQFVTTDNHASGQLAARQLAELM-GQRGRVVLLRTVAGSASTDDRARGFIDY 176 Query: 175 I-KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 233 + NAP I I+ G + K + + + + ++A N+ G ++A++E Sbjct: 177 LSANAPAISIVADVYGGGSAGKARHSASALLAKSA---DFDAIFAVNESATDGMLRALRE 233 Query: 234 AGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEK 292 AGL K D P + + + E + + P+ G A A+ ++ + E Sbjct: 234 AGLAGRK--RFIGFDSTPFLLEGLEKKEIDGLIVQDPDRMGYLAIKAVVAALRNRPIKES 291 Query: 293 LTLTKSTLYLPDT 305 + T +TL Sbjct: 292 VIHTGTTLVTRAN 304 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 18/305 (5%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGI---TLKIADGQQKQENQIK 70 A + T+G+ + W ++ AE+ + + + QI Sbjct: 37 ATTRADPGGKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQIS 96 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 V+S +++ VDAI + P+ + PV+++A A IPV L+ D +D + V AD+ Sbjct: 97 NVQSMISRRVDAIIMTPISPSASVPVIQQANRAGIPVILVAGQADTRDTA---AEVRADD 153 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 I+ G+ +WLV+E+ G+ + L G G S R KG + P+I+++ Sbjct: 154 IVFGRTGAEWLVRELGGR-GKIYVLNGLPGFSTDTLRWKGAKDVFDRYPDIEVVADAHAA 212 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 + ++ K + + + A + V++ M +GAIQA + AG + + Sbjct: 213 WDTARAKTAVSNMLAAH---PEVDGVWSQGGAMTLGAIQAFRAAGKPL---VPMTGENNN 266 Query: 251 P-----DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 D D ++ + P G G K+ L D Sbjct: 267 GLMKVWDSLNRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEVRKVNLVNPAPITSDN 326 Query: 306 AKEEL 310 + + Sbjct: 327 LADYV 331 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 14/292 (4%) Query: 25 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD--GQQKQENQIKAVRSFVAQGVDA 82 + + + AA + A +E +K+G+ +++ + + + + QG + Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 83 IFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS----LYMTTVTADNILEGKLIG 138 + PV AT L +IP+ LD ID Y + + +DN+ G+ G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 + L+K + GK V LQG G I+R+KGF E + + I+ +Q D+ ++KG+ Sbjct: 141 EGLLKLMGGK-GEVAILQGIAGEQNGINRQKGFTEKVA--GKLDIVATQPADYDQAKGQT 197 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 V E+ +KA I ++A ND M +GA QA++ AGL + S+DG+ +A+ Sbjct: 198 VTEAILKAH---PKITGIFAANDTMGLGAAQAVRNAGLTG--KVSIISVDGISAALEAVK 252 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 G + ++ P G + L + + Sbjct: 253 AGTLSGTISQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALIDSTNVDKAI 304 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 123/313 (39%), Gaps = 13/313 (4%) Query: 2 WKRLLIVS---AVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 RLL V+ S + S A AA T Q+ ++ + A+ A+ G L I Sbjct: 8 KLRLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVI 67 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 + Q A+ +++ QGV I +A + G P +KEA A IPV +D + Sbjct: 68 FNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP 127 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVV--ELQGTVGASVAIDRKKGFAEAIK 176 ++ V DNI G++IG + V V + + G + +++ R+KGF E +K Sbjct: 128 QA---AQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLK 184 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + P I I G + K E+ I ++ +YA + ++GAI A++ G Sbjct: 185 SNPKITIANVVDGQNVQDKAMTAAENLITGN---PDLTAIYATGEPALLGAIAAVENQGR 241 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 + KDI D M G A ++ P G G K L Sbjct: 242 Q--KDIKVFGWDLTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTILV 299 Query: 297 KSTLYLPDTAKEE 309 +T+ Sbjct: 300 PATVVTKANVDSY 312 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 16/304 (5%) Query: 20 LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQG 79 +G S + + AA+ AK+ ++ G + D Q K + QI V V +G Sbjct: 32 QTGAFKIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRG 91 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 V + I P + G + A + V ++D +++ ++ ++T V + N + G L+G Sbjct: 92 VKLLIINPADSEGLVNAVNNASANGVKVVVIDSTLN--PRANFVTQVQSSNSINGALVGH 149 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-------PNIKIIRSQSGDFT 192 W+++EV K + L G G V +R+ G I A ++ ++ G + Sbjct: 150 WVIEEVGNKSLKIALLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHWN 209 Query: 193 RSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 252 G + ME + A K+I MV ND MV+GA +AI+ AG +L + D + Sbjct: 210 DEGGLKAMEDLLVAN---KDINMVLGENDSMVLGARRAIESAGRTGI--LLVAAADAQKE 264 Query: 253 IYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM--PEKLTLTKSTLYLPDTAKEEL 310 + G+ + P + L G + K TLT + Sbjct: 265 ALALIKQGKYGVTGLNDPALVARTAIDLGVKVVKGEVKDVPKQTLTTPAAITKGNVDKFY 324 Query: 311 EKKK 314 K Sbjct: 325 NPKA 328 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 121/317 (38%), Gaps = 30/317 (9%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKR------GITLKIADGQQKQENQIKAVRS 74 + +G + + + ++ + ++++ IT+ DGQ +Q Q V + Sbjct: 39 KKEIKIGVALYKFDDTFISSVKDAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDT 98 Query: 75 FVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM--TTVTADNIL 132 F+ QG D I + V T ++++A+ A IPV +R +D + + V A Sbjct: 99 FITQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEE 158 Query: 133 EGKLIGDWL---------VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIK 182 G + G+ + V L+G G A+ R + +A++ A + Sbjct: 159 SGTIQGEVAADYFKANPDADKNKDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGFQVD 218 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL-KPGKD 241 + S + + R+ G+E M ++I A G I +V A+NDDM +GAI+A+K AG GK Sbjct: 219 KLASDTALWQRANGQEKMAAWISA--FGDKIELVLANNDDMALGAIEALKAAGYLSDGKF 276 Query: 242 ILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPE---------K 292 I +D ++ G +V G + P K Sbjct: 277 IPVIGVDATAPAKDSLKAGLLYGTVLNDARGQGKGIFDIAYALAKKENPAEKVQGITDGK 336 Query: 293 LTLTKSTLYLPDTAKEE 309 + + Sbjct: 337 YLWIPYQKVTKENVDKF 353 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 129/305 (42%), Gaps = 10/305 (3%) Query: 8 VSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK--Q 65 +SA A S+ + + + G + + A A K G T+ Sbjct: 20 LSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDAAAKYGATVTFNGPDNDSQV 79 Query: 66 ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT 125 + Q V++ + + DA+ IAP+ P ++ AK A IP+F D + + + +T Sbjct: 80 DKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIPLFAFDTAFET-NADAITST 138 Query: 126 VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA-PNIKII 184 V N GK+ + L+ +NGK + + + + +R+ GF + +K P+++++ Sbjct: 139 VKTSNREVGKVAAENLIALLNGK-GKYAVIAHSQTDATSTERRDGFLDYMKKNAPDMEMV 197 Query: 185 RS-QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 Q + ++K +++ + ++A ++ ++A N+ V+GA ++ A LK G +L Sbjct: 198 GEVQYSNADQAKAQDIASAILQAN---PDLDAIFATNEATVVGAATPVESA-LKSGHKVL 253 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 +D + + DG + SV P G +G +K+ + Y Sbjct: 254 LVGVDSGKAQQQYIRDGVISGSVSQNPYQIGYKTIENAVKSLNGEKIDKVIDSGCFWYNA 313 Query: 304 DTAKE 308 D + Sbjct: 314 DNIDD 318 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 124/315 (39%), Gaps = 17/315 (5%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ--QKQENQIK 70 AA + + + T+ + + + N AE G + Q E+Q++ Sbjct: 48 AATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVR 107 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 V + GVDAI I PV + G P L++A DA IPV + + + Sbjct: 108 LVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVLVQGTQANTDKIYGWY---GTKY 164 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 E LI ++L ++++ K NVV + G A AID + P++ +I Q G+ Sbjct: 165 ADEATLIAEYLAEKLDYK-GNVVYITGPQQAQNAIDEINATHAVFEKYPDLNLIEEQPGN 223 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKD---ILTGSI 247 F R+ VME+ I+ + +I V ND+ +GAI A++ AG K G + I I Sbjct: 224 FNRATSMSVMENLIQKYSE-DDIDWVIGGNDECAMGAIAAMENAGWKLGFEDGGIGVSGI 282 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKDGTMPEKLTLTK------STL 300 D D AM +G SV P G L Y DG + + + Sbjct: 283 DCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDFQTADDVV 342 Query: 301 YLPDTAKEELEKKKN 315 +E Sbjct: 343 IDASNIDNYIENLAW 357 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 116/286 (40%), Gaps = 12/286 (4%) Query: 26 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQGVDAI 83 +G + + + K+ + +G+ L + Q Q+ + + QG + Sbjct: 58 IGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGL 117 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 ++P +P ++ A I V ++ ++ + + Y+ V DN G + W + Sbjct: 118 LVSPQTDNNLQPAMETAASRGIAVVNVNDAV-IPSATQYVGNVQRDN---GVRVAQWFID 173 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESF 203 G V ++G G A R GF I A N +++ S +++R + + + Sbjct: 174 NRPG-GGKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDAASTI 232 Query: 204 IKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEAN 263 ++ ++ YA+ND M +G ++A+K A L+ + + DG+PD Y ++ G+ Sbjct: 233 LQQH---PDLIGFYANNDGMALGVVEAVKAANLQ--EQVSVFGTDGIPDAYASIRAGDLT 287 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +V+ P + G + G ++ T L D + Sbjct: 288 GTVDSFPVLTGEVAMEVVLRLLAGQGIPRVVATPQALITADNVADY 333 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 15/267 (5%) Query: 53 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDR 112 + ++ A + QI + F+ +G D I ++P A PV+ +A D + V L+DR Sbjct: 14 NVRVEFASAKDNNRVQIAQIERFIDKGADLIIVSPNEAKALTPVINKAFDRGVRVVLVDR 73 Query: 113 SIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFA 172 Y + ADN+ G+ +G ++ + + GK V+ELQG G+S AI+R GF Sbjct: 74 K---SASDKYTAFIGADNVAIGRAVGRFVGEHLGGK-GRVMELQGLRGSSPAIERDSGFR 129 Query: 173 EAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 EA+ + P IK++ + D+ K + K +V+A D M IGA QA + Sbjct: 130 EALAHYPQIKVVANAHADWFALKAETEATRMFKTVGEA---DLVFAQCDRMGIGAHQATQ 186 Query: 233 EAGLKPGKDILTGSIDGVP---DIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 + G+K + +D +P D +A+ +G A+ P +G Sbjct: 187 KLGIKG---VKIVGVDALPTPGDGIEAVKNGTFLATFV-YPTHGDEVLKLAMNIL-EGRP 241 Query: 290 PEKLTLTKSTLYLPDTAKEELEKKKNM 316 + T+ ++ + + A+ L++ + Sbjct: 242 FRRETILQTGVIDANNAESALQQWAEL 268 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 11/288 (3%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + +G + + + + + E+ G TL D + QI+ + F+ VD Sbjct: 42 SKRKIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSLDKQIEEIYDFIDLKVD 101 Query: 82 AIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWL 141 AIFI PV G L +A+ A I ++ D+ D L TV +DN G L + L Sbjct: 102 AIFINPVDWVGIRNALIDAQKAGI--IIIAIDTDIYDDDLTACTVVSDNYKAGVLCAEDL 159 Query: 142 VKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVME 201 + + N N++ L+ A AIDR GF +AI+N N K++ D V+E Sbjct: 160 MNKRN--SANIILLEH-KSAKSAIDRINGFEDAIRNNKNFKVVARSDCDGQLETAMPVVE 216 Query: 202 SFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGE 261 + + + K++ + A ND +G I A++E +K I IDG PD K + + + Sbjct: 217 NILLKQ---KDVDTIMALNDPSALGGIMALEEKNIKG---INVYGIDGSPDGKKMVKEDK 270 Query: 262 ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 +A+V +P G G +K + L + E Sbjct: 271 MSATVSQSPRKIGRISGESLYNIFQGKEVDKKIVVPVELITKENIDEF 318 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 116/302 (38%), Gaps = 14/302 (4%) Query: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 R+L A M+ A A +G S + + + A + K EA+ + L+++ Q Sbjct: 8 RILFSGVALAMMAGAASAEG--IGASLLTQQHPFYIALADAMKKEAQAENVPLEVSIANQ 65 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 Q+ V F+ +GVD I I+PV + G + +A+ A I V +D + D Sbjct: 66 DLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANNVD---VT 122 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 + V DN G+ + + K + G+ NV + +DR +GF + I P+IKI Sbjct: 123 SFVGTDNFAGGEKAAELMAKTI-GEKGNVAVIDY-PTVQSVVDRIEGFKKGIAKYPDIKI 180 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 + Q G TR + ++ ++A +I ++ DD + A K + Sbjct: 181 VAIQPG-ITRPEALSAAQNILQAN---PDIVGIFGFGDDAAL--AAASAVKSAKLENQVK 234 Query: 244 TGSIDGVPDIYKAMM-DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYL 302 DG+ + A+ D + P+ G G + Sbjct: 235 VIGFDGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIVPGVVT 294 Query: 303 PD 304 D Sbjct: 295 KD 296 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 139/342 (40%), Gaps = 36/342 (10%) Query: 1 MWKRLLIVSAVSAAMSSMAL-------------------------AAPLTVGFSQVGSES 35 M KR++ + A+ S+A ++V + + Sbjct: 1 MKKRVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNN 60 Query: 36 GWRAAETNVAKSEAEKRGITLKIADGQQ--KQENQIKAVRSFVAQGVDAIFIAPVVATGW 93 W + ++ A+ A+ G+ L IA Q+ E Q+ + + + + DAI ++ + G Sbjct: 61 PWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGV 120 Query: 94 EPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVV 153 P +K+A++A I + D I D S+ V D++ G ++ +++ G+ V Sbjct: 121 IPAIKKAREAGIKIVNFDTRI--SDTSVIDAFVGGDDVAGAYKAGKYICEQLGGE-GEVA 177 Query: 154 ELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNI 213 + G + S +DR GF +A P IK++ Q +++ K +V + + A N+ Sbjct: 178 IITGLMEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILTAN---PNV 234 Query: 214 CMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVEL-TPNM 272 ++A ND M +G + A K A K D++ DG+ D MDG+ +A V L + Sbjct: 235 KAIFACNDQMAVGMVNAAKAA-GKKADDLILVGYDGILDAVNMTMDGDLDAFVSLPNLDE 293 Query: 273 AGPAFDALEKYKKDGTM-PEKLTLTKSTLYLPDTAKEELEKK 313 + ++ L TL + ++ Sbjct: 294 GAMGVKLATALVMNSDYHYDREILYDCTLVTGEFVDGLTDQT 335 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 128/318 (40%), Gaps = 14/318 (4%) Query: 1 MWKRLLIVSAVSAAMSS--MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M L+V+A +A++ + + A +G + ++ + + A ++G+ + + Sbjct: 1 MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 D + Q+ V+ + Q +DA P A + A++A IPV +DR + Sbjct: 61 VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 T + +++ + +++++ G + + G G + +DR G AI Sbjct: 121 GD---TFIAGESVESAYAVCKFIIEKAGG-SGKMAIIHGQKGTTPEVDRFTGCKRAIDEN 176 Query: 179 PNIKIIRSQSGD-FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 237 +++I Q + ++ +G + ++ ++A +I +++ D + +GA +A+ A L Sbjct: 177 KGVELIDQQWSNMWSADEGFSIAQNMLQAN---PDITIIFGQADGLAMGAAKAVDVANLS 233 Query: 238 PGKDILTGSIDGVPDIYKAMM--DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 ++ G DG + + G A+ + G G E+ Sbjct: 234 --DKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQT 291 Query: 296 TKSTLYLPDTAKEELEKK 313 + L D A E ++ Sbjct: 292 PNAVLTTCDNAPEFVKNH 309 >UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5KK65_9FIRM Length = 343 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 64/345 (18%), Positives = 121/345 (35%), Gaps = 36/345 (10%) Query: 1 MWKRLLIVSAVSAAM----------SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE 50 M K+ L+ +A+ M ++++ + VG + + + K E Sbjct: 1 MKKKKLLAAAIVLCMVIQLLCACGKQKISMSDKVYVGVTCYDQNDTFLSELLVCFKEELN 60 Query: 51 ---KRGIT--LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 105 K G+ + + + Q Q V+ + G + + + V ++ AK+ ++ Sbjct: 61 HLNKNGVETTVTVKNAAGSQRTQNDQVKELINAGCNVLCVNLVDRADPSEIIDVAKEHDV 120 Query: 106 PVFLLDRSIDVKDKSLYM--TTVTADNILEGKLIGDWLVKEV---------NGKPCNVVE 154 P+ +R +D + V AD G L G+ V+ + V Sbjct: 121 PIIFFNREPVAEDMRQWDRLYYVGADAKQSGVLQGELAVEMIRQNSQIDHNKDGKIQYVV 180 Query: 155 LQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNI 213 L+G G AI R + + + ++ + Q ++ R++ + ME + N I Sbjct: 181 LEGEAGHQDAIIRTENAVDTLNKNGIELEKLSYQIANWNRAQAQNRMEQMLGQYKN--KI 238 Query: 214 CMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMA 273 +V A+NDDM +GA+ A K + IDG KA+ D +V Sbjct: 239 ELVLANNDDMALGALDAYKNLNYTEALLPVFIGIDGTDMGLKAVEDSSMAGTVYNDKEGQ 298 Query: 274 GPAFDALEKYKKDGTMPEK-------LTLTKSTLYLPDTAKEELE 311 A L G E+ + + E L+ Sbjct: 299 ARAIAKLSAALVIGKEAEEIKFTNENYIYLPYSKVTKENVHEYLK 343 >UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKG2_9FIRM Length = 343 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 9/300 (3%) Query: 12 SAAMSSMALAAP----LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQEN 67 + + A A +T+GFSQ + S W+ ET + +A++ G+ L D Sbjct: 44 AVEAAGSAEAGKGLEGMTIGFSQCDNSSNWKIVETESIQEKAKELGVNLIYTDASGNIAK 103 Query: 68 QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVT 127 Q + V+QGV+ I +AP G + LK A DA I V L+DRSI+ + + Y T V Sbjct: 104 QASDIEDMVSQGVEYIIVAPQEEDGLQSALKSAMDAGIGVILIDRSINGEAGNAYTTKVM 163 Query: 128 ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ 187 +D + E + + +++ +G+ NVV +QGT GA+ +R+KGF +AI + ++K+I Q Sbjct: 164 SDFVWEAEQVAQRVIEVTSGE-GNVVIIQGTQGATSTTERQKGFMDAIADT-DLKVISDQ 221 Query: 188 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSI 247 +++ K +EVME+ ++A G +I +VY H DM +GAI AIK AG +PGKD+ + Sbjct: 222 VANYSMPKAQEVMENVLQA--QGNDIDIVYCHGADMAMGAIAAIKAAGFEPGKDMQVVCV 279 Query: 248 DGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAK 307 D D +A++ GE + +P G L G E + + TLY + A Sbjct: 280 DASKDAMEALIAGELLCTCSCSPYF-GEVTFDLIGKMAAGETVEASYINEDTLYDVNNAD 338 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 131/315 (41%), Gaps = 13/315 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + L + +A + ++ A G + + A ++ A++ G+ + Sbjct: 4 LKTTLKLGAAFATLLAVTPAMADGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYYMQA 63 Query: 61 GQQKQEN--QIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF----LLDRSI 114 + Q Q+ + + + A+ A + +T P LK A+DA I V LD++I Sbjct: 64 VESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLDQAI 123 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGK-PCNVVELQGTVGASVAIDRKKGFAE 173 + + +DN+L G +++V ++ V+ ++G G R GFA+ Sbjct: 124 LDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADATGPVLVIEGLSGNITGQKRASGFAD 183 Query: 174 AIKN-APNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIK 232 + AP ++I+ S GD+ R K + + + ++A ND M +GA++++ Sbjct: 184 KLAELAPGLEIVASLPGDWDRGKAANITNDILTRN---PGLVAIFAANDGMALGAVESVF 240 Query: 233 EAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEK 292 AG G +++ +DG D K++ +G ASV P + G K +G K Sbjct: 241 AAGK--GGEVIIVGVDGNSDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGGEVAK 298 Query: 293 LTLTKSTLYLPDTAK 307 + + + D Sbjct: 299 EIIVPTLVLTKDVMD 313 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 75/303 (24%), Positives = 131/303 (43%), Gaps = 15/303 (4%) Query: 1 MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD 60 + + I A+++A ++ V S + + A N K A+ + I LK++ Sbjct: 4 LKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKVSV 63 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q QI + + + VDAI I+PV + G LK+A+ A IPV +D + Sbjct: 64 ANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENSK-- 121 Query: 121 LYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 180 ++ + DN G + G VK++ GK VV L G S R +GF +A+ + + Sbjct: 122 -IVSHIATDNYGGGVVAGKLAVKQLGGK-GQVVMLSY-PGISSVEARLQGFRDAVADT-D 177 Query: 181 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK 240 IKI+ Q G TR + + ++A + +++A DDM+IGA A+ + K Sbjct: 178 IKIVAVQPGK-TREESMTSTINMLQAN---PDTDLIFAFGDDMMIGAGLAVTKQKSKA-- 231 Query: 241 DILTGSIDGVPDIYKAMMDGE-ANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKST 299 + DG+P+ KA+ + + V+ + G + +G + Sbjct: 232 --VVIGFDGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPIVPV 289 Query: 300 LYL 302 LY Sbjct: 290 LYT 292 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 107/311 (34%), Gaps = 10/311 (3%) Query: 1 MWKRLLIVSAVSAAMS-SMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGITLKI 58 M + L + + AA++ A AA + + S + A A+ T+ Sbjct: 23 MRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMTF 82 Query: 59 A--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 + +Q+ V V Q V AI +AP P +++A +A IPV L+D I Sbjct: 83 QGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISD 142 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 Y + + DN G+ +G +V V G+ V + G I R GF + I Sbjct: 143 SGAKYYQSFLATDNEAAGEALGKEMVDHV-GQTGKVAIMSYVPGVGSEIGRVGGFRKYIA 201 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 +I+I+ + + + ++ ++A N+ +G +AI++AG Sbjct: 202 EHSHIQIVGPFYSQSQMALAMNQTTDVLASN---PDLKGIFAANEMTAVGVGRAIQQAGK 258 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 + + DG D + G G G P K T Sbjct: 259 SG--KLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAKPTKYVNT 316 Query: 297 KSTLYLPDTAK 307 Sbjct: 317 GVVFVTSANLD 327 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 12/291 (4%) Query: 21 AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ--QKQENQIKAVRSFVAQ 78 AA VG + + + + A K GI Q Q Q+ + ++Q Sbjct: 54 AAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLISQ 113 Query: 79 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIG 138 G +A+ +P P ++ A A +PV ++ ++ + V G + Sbjct: 114 GFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAAN----YVGNVQKGNGVNVA 169 Query: 139 DWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE 198 +W + V ++G G A R GF E I +++ S +++R + Sbjct: 170 NWFI-ANRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAFN 228 Query: 199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM 258 + ++ ++ YA+ND M +G ++A+K AG + + DG+ D Y A+ Sbjct: 229 AASTILQQY---PDLIGFYANNDGMALGVVEAVKAAGKA--EQVAVFGTDGISDAYAAVR 283 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 G+ +V+ P + G + G ++ T L D + Sbjct: 284 AGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLPRVVATPQALITKDNVETY 334 >UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium RepID=A6M1Q7_CLOB8 Length = 361 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEK------RGITLKIADGQQKQENQIKAVRSF 75 + +G + + + + + + A++ I + +AD + NQ V F Sbjct: 46 KEIKIGVTLYKQDDAFISEISKNIEDIAKEKENQGKYKIIVNVADAKGNLINQSNQVDKF 105 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY--MTTVTADNILE 133 VAQ D I + V T ++ +AK A IP+ +R +D + + V AD Sbjct: 106 VAQNYDVICVNMVDRTAASMIIDKAKSANIPIVFFNREPVEEDMERWNKLYYVGADAQQS 165 Query: 134 GKLIGDW----------LVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIK 182 G++ + +V + V L+G G ++ R + + I ++ Sbjct: 166 GEMQANIIINAYKKDNKMVDKNGDGKIQYVMLEGEQGHQDSLIRTEYCIKTITQNGIELE 225 Query: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242 + + ++ ++ M +IK N G I +V+++ND+M +GAI AI +A + GK Sbjct: 226 KLADDTANWQSAQATTKMSQWIK--NFGDKIEVVFSNNDEMALGAINAINDANI-GGKKP 282 Query: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK--------DGTMPEKLT 294 L IDG+P +A+ +G ++ A L +G K Sbjct: 283 LVVGIDGLPKALEAVKNGSMIGTILNDSKKQANAIFNLAYTLASHGNVNSIEGLEKGKYI 342 Query: 295 LTKSTLYLPDTAKEELEKK 313 T D +E K Sbjct: 343 RTPHAEVTSDNVDLYIENK 361 >UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional regulator n=21 Tax=Bacteria RepID=Q2RGX1_MOOTA Length = 381 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 121/313 (38%), Gaps = 25/313 (7%) Query: 16 SSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSF 75 +S + +G S + ++ ++A++ G + + Q+ + Sbjct: 41 ASAKNGDKIKIGLSMDDLRQERWQHDRDLFVAKAKELGAEVLVQSANGDDATQLSQAENL 100 Query: 76 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGK 135 ++QG++ + + P P+++ A A + V DR I D LY++ DN+ G+ Sbjct: 101 ISQGINVLVVIPHNGDAMAPIVEAAHKAGVKVLAYDRLIRNADVDLYISF---DNVRVGE 157 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK---NAPNIKIIRSQSG-DF 191 L ++L K+V + G+ + A ++G +K + +IK++ Q D+ Sbjct: 158 LQAEYLTKKV--PKGKYFLMGGSPTDNNAKLFRQGQMNVLKPLIDKGDIKVVGDQWVKDW 215 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 + ++ME+ + + NN I V A ND GAIQA+ L + D Sbjct: 216 LPEEAMKIMENALTSNNN--QIDAVVASNDSTAGGAIQALAAQNLAG--KVAISGQDADL 271 Query: 252 DIYKAMMDGEANASVELT----PNMAGPAFDALEK--------YKKDGTMPEKLTLTKST 299 + +++G + +V A AL K +G + L Sbjct: 272 AACQRIVEGTQSMTVYKPITTLATRAAEVAVALAKGENIGANNKVNNGKIDVPSVLLTPI 331 Query: 300 LYLPDTAKEELEK 312 + D + + K Sbjct: 332 MVDKDNMVQTVIK 344 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 114/298 (38%), Gaps = 11/298 (3%) Query: 13 AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIK 70 AA + A + + A+S G + E Q+K Sbjct: 52 AAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVK 111 Query: 71 AVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADN 130 V F+ +GV AI I+PV G PVL++A+DA IPV ++D ++ +TV+ ++ Sbjct: 112 LVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPR---STVSTND 168 Query: 131 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGD 190 GK + L + + GA R+KGF++ + PN KII + G Sbjct: 169 EAAGKFAAEKLKELAGDAGGTFAIVSAVPGAVQEGGREKGFSDELGTYPNYKIIGTYYGK 228 Query: 191 FTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 250 R++ + + + + +I Y N+ G ++E K+ + + D Sbjct: 229 GDRNQTYNITQDILTSN---PDITGFYTVNEGSSAGVTLGVRE---GDLKEKIFVAFDPS 282 Query: 251 PDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKE 308 ++ A+ DG + +V P + G +G EK T D + Sbjct: 283 TEVLDAIRDGYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKIDVPVTWVTIDNLDD 340 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 134/321 (41%), Gaps = 21/321 (6%) Query: 6 LIVSAVSAAMSSMALAAP---------------LTVGFSQVGS-ESGWRAAETNVAKSEA 49 L+ A++A ++ A+A +G + + + ++A A + A Sbjct: 26 LVAGALAAMIAVPAIAQEAPDWLGGELQKPLSETRIGITVLYPGSNSYQAMYAETAAAYA 85 Query: 50 EKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFL 109 + GI + D Q Q ++ +Q +DAI + P P +++A + IP+ Sbjct: 86 AELGIMATVMDPQGDPAIQFDQIQDMASQNMDAIVVWPTSQNALIPAIRDASRSGIPIIT 145 Query: 110 LDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKK 169 + I + + D+ + + L + G+ N+V ++GT G SV+I R Sbjct: 146 SNSPIGEAGRRYILGHTGPDDCALAEQAAEMLGSAIGGE-GNIVVVEGTPGYSVSILRGN 204 Query: 170 GFAEAIK-NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 F + + + P++ ++ SQ+ ++ R K + VME+F+ G I VYA +D M +G + Sbjct: 205 CFLDKLADDFPDVNVLDSQTAEWNREKAQTVMETFLTR--FGDQIDGVYAFDDGMALGVV 262 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGT 288 A++ AG G D+ S + + + AM +G + S + +P +G Sbjct: 263 SALQAAGRSAG-DVKIVSCNQFGEGWDAMKEGWISGSGKQSPIDDAILAIQTAVRVANGI 321 Query: 289 MPEKLTLTKSTLYLPDTAKEE 309 L + + E Sbjct: 322 EVPALQEIERAQITAENVDEF 342 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 69/340 (20%), Positives = 124/340 (36%), Gaps = 34/340 (10%) Query: 1 MWKRLLIVSAVSAAMSSMAL------------AAPLTVGFSQVGSESGWRAAETNVAKSE 48 M KR+ +V +++ M M L + GS + AA N + Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVF 108 + I + + DG Q A+++ ++ G D I I+PV + + EA DA I V Sbjct: 61 EKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVC 120 Query: 109 LLDRSIDVKDKSLYMT-----TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASV 163 L I D + V G+ D + + + + ++GT G S Sbjct: 121 ALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEAL-DRSGKIAIIEGTPGMSD 179 Query: 164 AIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDM 223 RKKG E K P+I+++ G++ K M++ I++ + +V H+D+M Sbjct: 180 TEGRKKGIDEENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSN---PEVELVICHSDNM 236 Query: 224 VIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKY 283 +GA +A+++A + + I G D + GE ++ P Sbjct: 237 AVGAAKALEDADMT--DKVKIVGIGGSKDALDLIKKGEIYGTIMYVPETEAYTALEATAK 294 Query: 284 KKDGTMPEKLTLTKST----------LYLPDTAKEELEKK 313 G EK T + + + + Sbjct: 295 VVRGE-AEKETFYNVQDLPLFAETGDVCTQENVDKFTAEW 333 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 13/315 (4%) Query: 1 MWKRLLIVSAVSAAMSSMAL--AAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI 58 M R+ +++A + S A A T+ ++ + A+E A +A+ G + Sbjct: 1 MKLRITLLTAATLTAFSFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV 60 Query: 59 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD 118 + + Q + + + + + V I + +T +++AK A IPV L++R I V D Sbjct: 61 LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD 120 Query: 119 KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 178 +L +T +N G + + V+++ K EL + + + R K F + I Sbjct: 121 VALE--QITHNNFQAGSEVANVFVEKMAEK-GKYAELTCNLADNNCVTRSKSFHQVIDQY 177 Query: 179 PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 238 P++ + Q T GK +M+S ++A ++ V N + +GAI A+K A Sbjct: 178 PDMVSVAKQDAKGTLIDGKRIMDSILQAH---PDVKGVICGNGPVALGAIAALKAANRS- 233 Query: 239 GKDILTGSIDGVPDIYKAMMDGEANASVE-LTPNMAGPAFDALEKYKKDGTMPEKL-TLT 296 D++ IDG D A+ G A+V +A L+ Y + G P K + Sbjct: 234 --DVIVVGIDGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMF 291 Query: 297 KSTLYLPDTAKEELE 311 + L D A + + Sbjct: 292 RGILITQDNADKVQD 306 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 16/294 (5%) Query: 23 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG----ITLKIA--DGQQKQENQIKAVRSFV 76 PL +GF + + K E +KRG I L + Q ++QI+A+ +++ Sbjct: 70 PLKLGF-LPTAMDTYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWI 128 Query: 77 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKL 136 G+DAI +A P ++ A +A IPVFL + D Y++ V D G+ Sbjct: 129 NDGIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPF--ADNPYYVSDVGYDQSDGGRA 186 Query: 137 IGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG 196 W+V K + L+G G R KGF E I PN KI+ Q + R++G Sbjct: 187 QAQWIVDTYGDKEVKIGILEGLPG-PHTSQRMKGFNEIISKHPNFKIVAQQPAGWVRAQG 245 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 V E+ A +I ++ A D+M +G +QA+K GL + + + + A Sbjct: 246 LSVTENMFTAN---PDIEVLVALYDEMALGGLQALKAKGLNG--KVAIVGYENMKEANAA 300 Query: 257 MMDGEANASVELTPNMAGPAFDALEK-YKKDGTMPEKLTLTKSTLYLPDTAKEE 309 ++ G+ +A+V+ G + G K +Y K Sbjct: 301 ILTGDFSATVDTGAKEEGRNIVRAVDEFLMKGNPLPKKIFVSPKVYDATNIKTF 354 >UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasmic D-galactose/D-glucose-binding protein n=15 Tax=Firmicutes RepID=C6CXV0_PAESJ Length = 366 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 123/321 (38%), Gaps = 27/321 (8%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A S A+ TVG + + + N ++ ++ + I D Q Q Q V Sbjct: 49 AAESPAVKKEPTVGVAIYKFDDTFMTGVRNAIEAASQGV-AKVDIVDSQNSQPTQNDKVD 107 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY--MTTVTADNI 131 F+ + +A+ I V T ++ +AK A PV +R +D + + + V A Sbjct: 108 LFITKKYNAMAINAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAKAE 167 Query: 132 LEGKLIGDWLV---------KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NI 181 G + G+ ++ + + L+G G A R K +AI +A + Sbjct: 168 ESGTMSGELIIDYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGIGV 227 Query: 182 KIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL-KPGK 240 + + + + R K ++ M +F+ A G I V A+NDDM +GAI+A+K AG K GK Sbjct: 228 EKLAEDTAMWDRVKAQDKMATFLSAH--GDKIEAVLANNDDMALGAIEALKAAGYFKDGK 285 Query: 241 DILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMP---------- 290 + +D +A+ +G +V G A L +G P Sbjct: 286 FMPVVGVDATAAALQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFDIT 345 Query: 291 -EKLTLTKSTLYLPDTAKEEL 310 K D + Sbjct: 346 DSKYVWVPYKKITKDNMSDAQ 366 >UniRef50_Q0RYT8 ABC sugar transporter, periplasmic substrate binding protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RYT8_RHOSR Length = 340 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 113/290 (38%), Gaps = 7/290 (2%) Query: 25 TVGFSQV-GSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 T+ F + + + AE+ + + + Q ++ +A+ VD I Sbjct: 43 TIAFLVPMDRNHEYGRNYVSSLRKAAEEHHVNAFVMNSNYDASVQASQMKIAIAKKVDGI 102 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK-DKSLYMTTVTADNILEGKLIGDWLV 142 I P + +P+L +A+ A IPV + + D SLY ++ G+L G L Sbjct: 103 VIWPALYGAEQPMLIQAQRAGIPVDISNSQPPEDLDTSLYHAFTGPNDQRIGELQGKELA 162 Query: 143 KEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMES 202 K + K V + GT G + AI+R+ G + N P++K++ SQ G+F +++ + + Sbjct: 163 KLLGSK-GTYVYIGGTPGNAAAINRQIGLEREMANHPDVKLLGSQPGNFDKNQAQTAASA 221 Query: 203 FIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEA 262 I G I + +D + GA QA+ AG+ + + P + +G Sbjct: 222 LISR--FGNQIDALVTPDDIIASGAAQALDAAGMAG--QVKLLGHNYAPVARSLLENGSM 277 Query: 263 NASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEK 312 + ++ +P G ++ + D E Sbjct: 278 STTLFQSPCWDSTHALTTMMDVLAGKDVPPVSYMPLPVVTKDNLDEFTPN 327 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 13/288 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQG 79 T+ + + A+ + GI L + + + QI V + Sbjct: 52 DKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELK 111 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY----MTTVTADNILEGK 135 VDA+ IAP + P+LK A+D I V +D +D + + ++ DN L Sbjct: 112 VDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAAY 171 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 L +++ +P V ++G GA A RK G A + ++ ++S ++ + Sbjct: 172 KSTKVLTEKLT-QPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDE 230 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 E+ N NI ++ ND M +G I+ ++ G ++ + D +P Sbjct: 231 AFELAAKL---YNKNPNIGAIFCANDMMALGVIEYLQSTGK---DNVQVVAFDAIPQALN 284 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 A+ G A+V+ G G ++ + Sbjct: 285 AVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTPLKITIEAKIITK 332 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 121/325 (37%), Gaps = 15/325 (4%) Query: 1 MWKRLLIVSAVSAAMSSMA------LAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGI 54 M R I+S ++ S A A V + A + EA G+ Sbjct: 1 MNLRKSILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGL 60 Query: 55 TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSI 114 + + Q V +AQ D I + PV ++ P +++ A IP+ + + Sbjct: 61 KVDVKVTNYDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNSMP 120 Query: 115 DVKDKSLYMTTVTADNILEGKLIGDWLV----KEVNGKPCNVVELQGTVGASVAIDRKKG 170 D K + ++I G+ ++ ++ G V+ + G +G + R +G Sbjct: 121 DQKYSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQRYQG 180 Query: 171 FAEAIKNA-PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQ 229 F + +K P I+++ +Q D+ K + + K++ VY ND + G + Sbjct: 181 FVDGLKKNAPGIEVVGAQPADWDAVKAEAAASALFTQ---FKDVKGVYTENDSQLRGVVT 237 Query: 230 AIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTM 289 A + GL+P K + +A+ G+A A+VE +P G G Sbjct: 238 AAQRLGLEPSKLV-IVGHGCDAGGVEAISAGKAYATVEQSPFDDGAYAAKAALELATGKT 296 Query: 290 PEKLTLTKSTLYLPDTAKEELEKKK 314 P + + + T +KK Sbjct: 297 PRAVQYLPNPIATKATTNVCYSQKK 321 >UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMJ9_9PROT Length = 307 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 128/314 (40%), Gaps = 16/314 (5%) Query: 1 MWKRLLIVSAVSAAMSSMA----LAAPLTVGFSQVGSESGWRAAETNVAKSEA-EKRGIT 55 M K + + ++ A A + T+ F+Q + +R + + + I Sbjct: 1 MKKIFIFIVSILLASILNAGELDKSKTYTIAFAQDTLNNDYRLKQVKEVEKALLKYPNIR 60 Query: 56 LKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 115 +D + Q+K + F++QGVD + +P V+ +A + IPV L+ R + Sbjct: 61 FIYSDAKASASMQVKQIEDFISQGVDLLMTSPYDEDSTRQVISKAYKSNIPVVLVSRRVK 120 Query: 116 VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 175 D + + + +N K +LVK++N K V+ L+G +V R +GF E + Sbjct: 121 GND---FTSYIHPENRQIAKDAAKYLVKKMNYK-GTVLLLKGVAKTNVERMRTEGFFEVV 176 Query: 176 KNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 PNIK+I ++ ++ R ++ + A G+ V + +D M++G K+ G Sbjct: 177 NKYPNIKVI-ERTANYLRRDAIIEVDKLLSA---GQKFDAVMSQSDSMLVGVRMVFKKYG 232 Query: 236 LKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTL 295 +KP + ID + A+ DGE N+S + + + G K Sbjct: 233 IKPSSLVTV-GIDYIKPAQDAIRDGEQNSSFVYS--LCAKESADIAIKILSGESVAKEIK 289 Query: 296 TKSTLYLPDTAKEE 309 + E Sbjct: 290 LDTNQITRKNVDEI 303 >UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional regulator n=8 Tax=Actinobacteridae RepID=C7QZ43_JONDD Length = 328 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 162/319 (50%), Gaps = 13/319 (4%) Query: 5 LLIVSAVSAAMSSMALAAP------LTVGFSQVGSESGWRAAETNVAKS-EAEKRGITLK 57 + + ++ ++S+ + +TVGF VG E WR A + E+ G LK Sbjct: 13 IALAGTLALSVSACSDNGEGGGDELVTVGFVAVGPEGAWRQANETNIQESFTEEAGFNLK 72 Query: 58 IADG-QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDV 116 A Q++QI A SFV +GVD I ++ +GWE L A++AEIPV L+DR I+ Sbjct: 73 YAPATNLDQKSQIDAFTSFVDEGVDVILLSATEGSGWEDSLSRAQEAEIPVILIDRGIEP 132 Query: 117 KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK 176 + LY+T + DNI + +W K + N L+G G SV +R +G+ I Sbjct: 133 DNTDLYVTRIAPDNIAVSTSVAEW-AKTALPEGGNYFVLEGPAGVSVVNERNEGWDAVIG 191 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 + + +Q+ +++ + K V E+ +K+ NN ++ +V+A ND+M +GA QAI+EAGL Sbjct: 192 AESSFTKLGAQTANWSTEEAKSVFETVLKSNNN--DVQLVFAQNDEMGLGAAQAIEEAGL 249 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 PG+D+ +IDG +A+ G + E P A D + DG E + Sbjct: 250 TPGEDVKIATIDGTKGALEALAAGRLSFVAEYNPLFGDVAVD-VVNKVLDGESVEPYIIA 308 Query: 297 KSTLYL-PDTAKEELEKKK 314 +S + P+ A+E L +K Sbjct: 309 ESLTFDSPEAAQEALPDRK 327 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 131/335 (39%), Gaps = 36/335 (10%) Query: 1 MWK--RLLIVSAVSAAMSSMA-----------LAAPLTVGFSQVGSESGWRAAETNVAKS 47 M K +L++VS ++ + + +G + + + S Sbjct: 1 MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60 Query: 48 EAEKRG------ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 ++ G L I DG+Q Q NQ + + +F+AQG D I V T ++ AK Sbjct: 61 YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120 Query: 102 DAEIPVFLLDRSIDVKDKSLY---MTTVTADNILEGKLIGDWLVKEVNGKP-------CN 151 EIPV ++R + ++ ++ T V AD G + G +++ + K + Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQG-YMIANLENKGDIDGDGSVS 179 Query: 152 VVELQGTVGASVAIDRKKGFAEAIKNAPNIK---IIRSQSGDFTRSKGKEVMESFIKAEN 208 + L G A R + + ++ +K + + ++ +KG+E + ++ Sbjct: 180 YITLMGDPANVDAKQRTEYSVKGLEE-KGVKTNALAQPYQANWDTAKGQEFTANALEQ-- 236 Query: 209 NGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVEL 268 G + +V+A+ND M +GA+ AI+ AG K G+DI +D +PD + + G+ +V Sbjct: 237 FGNKLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLKGGKLTGTVLN 296 Query: 269 TPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLP 303 + G Sbjct: 297 DHFNQSHTAVDVALELLQGKDVSAYYWHDYVGVTK 331 >UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6 Tax=Streptococcus RepID=A3CKH1_STRSV Length = 328 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 13/291 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVD 81 + +G + + + + + + ++G L + D + + Q + + FV + VD Sbjct: 42 KQVKIGVTYMTMNNDFYKTLNAELEKKTNQQGSRLYVRDPELDEGKQSQQIDFFVREKVD 101 Query: 82 AIFIAPV--VATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGD 139 I I PV + L++AK A I + ++D I TT+ +DN G LI Sbjct: 102 VIVINPVKSNSPSIISSLQKAKKAGIKIIVVDAPISQD--VKVDTTIVSDNYQAGVLIAQ 159 Query: 140 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEV 199 ++K + N++ L+ A A+DR +GF + I+ P+ KII + + Sbjct: 160 DMMKRL--PSANILLLEHR-NAVSAMDRIQGFIDTIEKQPSYKIISQKETLGQTEETMPQ 216 Query: 200 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM- 258 ++ + + G + +V A ND IGA+ AIK GL K I +DG PDI + Sbjct: 217 VKGAL---DEGLDFNVVMALNDRAAIGALAAIKNQGLD--KKISIYGVDGSPDIKNFLAT 271 Query: 259 DGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEE 309 + +V +P G + + ++G + L L D + Sbjct: 272 TSDIEGTVAQSPIQMGRKVAQVIELMQEGKSYDSQYLIPVHLVNRDNISQY 322 >UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C4ZBY5_EUBR3 Length = 338 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 26/333 (7%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAE-----KRGITLKIAD 60 LI+S VS + + + + +G + + + K E K I++ I D Sbjct: 8 LILSFVSCSNTRVDEKKQIYIGVTCYDQKDTFIGELIETFKKECASLDTDKYDISMTIMD 67 Query: 61 GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS 120 Q Q V+ + G + + I T ++ A + +IP+ +R +D + Sbjct: 68 AAGSQRAQDDQVQEMIEDGCNVLCINLADRTDLSHIINAAMEKDIPIIFFNREPVDEDLN 127 Query: 121 LYM--TTVTADNILEGKLIGDWLVKEVNGKPC---------NVVELQGTVGASVAIDRKK 169 + V A G++ G+ + + P V L+G +G AI R + Sbjct: 128 RWDKLYYVGAKAKQSGQMQGELIADYIKNNPGVDKNGDGRIQYVILEGEMGHQDAIVRTE 187 Query: 170 GFAEAIKNAP-NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAI 228 E++KN I+ + Q ++ R++ + M I N I +V A+ND M +GAI Sbjct: 188 SVTESMKNNGLQIEKLSCQIANWNRAQAQNRMTQLIGQYKNS--IELVIANNDAMALGAI 245 Query: 229 QAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGT 288 A ++ G+ +DG D +A+ + A+V A L G Sbjct: 246 DAYEKLGVTESNVPAFFGVDGTDDGLEAVQQSKLAATVYNDKEGQAMAMAQLAYLAATGG 305 Query: 289 -------MPEKLTLTKSTLYLPDTAKEELEKKK 314 +K PD E ++ ++ Sbjct: 306 SMKNIKFEDKKYVYLPYEKVTPDNVNEFVKDEQ 338 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 142/324 (43%), Gaps = 26/324 (8%) Query: 6 LIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKS--EAEKRGITLKIADGQQ 63 + S + A + + G + A + ++ ++ + + + DG+ Sbjct: 11 IAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGKVEITVFDGKY 70 Query: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 123 Q + + + Q +AI +AP P + +A +A++PV + S Y Sbjct: 71 DPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVIV---SALKTSSKNYT 127 Query: 124 TTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKI 183 ++ D+ G++I + + K + N+V ++G +G S I+R+ G ++ N+K+ Sbjct: 128 ASIIVDDREGGRIIAEEMAKRL-PSGGNLVLMEGPIGQSAQIERRAGVDAGLEAHSNLKL 186 Query: 184 IRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDIL 243 + +SG+++R++G+ +ME+++ A I V A ND+M +GAI+A+K A + K + Sbjct: 187 LADKSGNWSRAEGQALMENWLSAYP--DQINGVLAENDEMALGAIEAMKAANVDLSK-VP 243 Query: 244 TGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPE------------ 291 +IDG+PD +A+ +GE ++ G L + GT + Sbjct: 244 VIAIDGIPDAKRAVENGEMAVTLYKYARAEGQGAVDLALRQVIGTEYKPQSEVWNGLMEW 303 Query: 292 -----KLTLTKSTLYLPDTAKEEL 310 K + + D K+ + Sbjct: 304 KDGTQKDYVVPWLILDKDNVKKYM 327 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 13/301 (4%) Query: 14 AMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR 73 A S TVG + + K+ A+K+G+ + D V Sbjct: 137 AASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNVE 196 Query: 74 SFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILE 133 +++ VDA+ I+ VL K A P L+DR Y + + DN Sbjct: 197 DLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRS---GTYASWIGPDNEAI 253 Query: 134 GKLIGDWLVKEVNGKPCNVVELQGTVG-ASVAIDRKKGFAEAIKNAPNIKII-RSQSGDF 191 G+ G++L ++ GK V ++G S+ + R G +A+ A I+++ G++ Sbjct: 254 GRQDGEFLAAKL-GKDATVALIKGGPADNSIGLARTTGVKKALDAA-GIRMVEGPDYGNW 311 Query: 192 TRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 251 G VMES + + K++ V+ ND M +GA +A+K+AG + K+I+ +DG Sbjct: 312 ASDGGLTVMESLLASH---KDLDAVFCENDAMCLGAQRAVKDAGRE--KEIVLAGVDGQA 366 Query: 252 DIYKAMMD-GEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEEL 310 + +A+ G + + G DG PEK T+ S + A + Sbjct: 367 EALQAIAAGGNYLVTGLNDADQIGSLGLDRAVDILDGKKPEKDTVVDSPQVTKENAAKYQ 426 Query: 311 E 311 + Sbjct: 427 D 427 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 15/298 (5%) Query: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 + VG+S + + A +V K ++ G+ ADGQ+ Q+ A+ +++G+ + Sbjct: 52 VKVGYSGPSMVAPYYVALEDVVKRSVQRYGMQYYTADGQEDVAKQVAAIEDLLSKGIQVL 111 Query: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 143 + P+ PV+ A + VF++D ID +K+ Y ++V A+N L G+L+G WL + Sbjct: 112 VLNPLDPKAVVPVVNRAIAEGVVVFIVDSMID--EKAAYTSSVVANNTLNGELLGLWLAE 169 Query: 144 EVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-------NIKIIRSQSGDFTRSKG 196 + + + G G V +++ GF + + N I+ G + + G Sbjct: 170 T-KNEALKIAIISGNQGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGG 228 Query: 197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKA 256 + ME + A + ++ A ND M +GA + IK+ G + I DG + + Sbjct: 229 LKAMEDILAAHPY---VNVLLAENDAMALGAYKIIKQMGKE--NQITILGFDGQKEAFDM 283 Query: 257 MMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKK 314 + G+ A+ + +P + G L +G KL T S L E + K Sbjct: 284 LKTGKFEATAQNSPKILGETIIELVARHLNGEKVNKLNYTPSVLISKKNVDEYYDAKA 341 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 28/327 (8%) Query: 7 IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSE-AEKRGI-TLKIADGQQK 64 A A P+ VG + G ++ + K A GI L + DG Sbjct: 15 AGLLPIAGKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANGIAELTVFDGNYD 74 Query: 65 QENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMT 124 Q Q D P+ + + V+ +A +PV + + ++ Sbjct: 75 HATQASQFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVGSNGPAKSDEL---VS 131 Query: 125 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKII 184 + +D++ G+ + L K + K N+V L G G R +G +A+ +I ++ Sbjct: 132 FIGSDDVAAGQYEAETLFKAIGDK-GNIVVLIGPEGNLGQELRTEGNKKALDANKDITVL 190 Query: 185 RSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILT 244 ++ +++RS+ +M++++ + I V A ND+M +GAI A+K AG+ P K I Sbjct: 191 ERKTANWSRSEAMVLMQNWLTSHKG--KINGVLAQNDEMGLGAIAAMKAAGIDP-KTIPV 247 Query: 245 GSIDGVPDIYKAMMDGEANASVELTPNMAGP-AFDALEKYKKD----------------- 286 IDGV D +A+ G+ S+ A D + Sbjct: 248 VGIDGVTDAVRAVQSGDMILSIRQDAQTQAQGAVDIALRRVIGDSYQPLAECWKKYPQMA 307 Query: 287 -GTMPEKLTLTKSTLYLPDTAKEELEK 312 G +KL T + A E L+K Sbjct: 308 WGNGTDKLYSVPWTYVTKENAAEFLQK 334 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 114/290 (39%), Gaps = 14/290 (4%) Query: 22 APLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQK--QENQIKAVRSFVAQG 79 V + + A+ A + G+ L + G + E QI + +A G Sbjct: 34 DKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDEQLAAG 93 Query: 80 VDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLY----MTTVTADNILEGK 135 +DA+ IAP + PVL A + + + +D ID + V+ DN G Sbjct: 94 IDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDNEFGGY 153 Query: 136 LIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK 195 G L + + G + ++G A A +R+ G A++ NI+++ S+ + Sbjct: 154 EAGKILAE-LAGPDAKALIIEGPRSAINARERRDGARRALQEN-NIEVVASEVASWKLES 211 Query: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYK 255 + ++ + +++A ND M +GA+ +E GL D L D +PD Sbjct: 212 AYALTQNV---HARNPELNVIFAANDMMALGALLYAQEHGLN---DWLIAGFDNIPDARA 265 Query: 256 AMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDT 305 A+ +G +++ + G A + + + L K+ + D Sbjct: 266 AVREGRLAVTIDQQADRQGYQGVATAVDLLNDKAVDDVVLVKTRVITADD 315 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 134/367 (36%), Gaps = 61/367 (16%) Query: 1 MWKRLLIVSAVSAAMSSMALAA--------------------------PLTVGFSQVGSE 34 M +R + A++ ++++ A T+G S Sbjct: 1 MKRRQFALFAITLMLATLIAACGGTPTTTAPTAAPAPQPTTAPAPEGRKFTIGISNPFIS 60 Query: 35 SGWRAAETNVAKSEAEKR---GI--TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 89 S +R ++ GI L I QI+ +++ + +GVDAI + P Sbjct: 61 SEYRTQMIQSLIEVNKEYMERGITNELVIESADTDVAGQIQQLQNLINKGVDAILVNPSD 120 Query: 90 ATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKP 149 G L+EA + I V +D+ ++ + V D K+ WL +++ G+ Sbjct: 121 VNGLNDTLQEAINKGIIVISVDQELNTPG----VYNVGIDQKEWAKISARWLAEKLGGQ- 175 Query: 150 CNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENN 209 N+V ++G G + R +G E +K PNIK++ ++G + + G++VM +F+ + Sbjct: 176 GNIVLIEGFPGHPANVARMEGVEEVLKEYPNIKVLGRETGKWDEATGQQVMSNFLAS--- 232 Query: 210 GKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD------GEAN 263 N+ + D M IGA+QA+ A P K + +G + Sbjct: 233 FPNLDGYWTQ-DGMAIGAMQAVMAAN--PSKWPVLVG-EGRCQFLQLWDQRLKEDPNFET 288 Query: 264 ASVELTPNMAGPAFDALEKYKKDGTMPE---------KLTLTKSTLYLPDTAKEELE--- 311 +V P ++ + + + + + D +E Sbjct: 289 IAVANPPGVSPTGLRIAINMLQGKQVDKSKLGGANGLSFVIPVPVIVTKDNFQEVFTTVC 348 Query: 312 KKKNMGY 318 K K Y Sbjct: 349 KDKPATY 355 >UniRef50_C7IGF5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=C7IGF5_9CLOT Length = 331 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 134/337 (39%), Gaps = 29/337 (8%) Query: 1 MWKRLLIVSAVSAAMSSMAL------------------AAPLTVGFSQVGSESGWRAAET 42 M KRL+ V ++S A++ +A + V + + A Sbjct: 1 MKKRLISVLSMSLAITFLAACGAGTPKTSDSTASGGSSSKGYKVAYIARAQSDSFAAWLA 60 Query: 43 NVAKSEAEKR-GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 101 N K EA+K I L + DGQ + + + + + D + + P P +++ Sbjct: 61 NAVKDEAKKYPDIKLDVFDGQANDDTENSMIENAITNKYDLVIVQPNNGEAQRPYVEKVV 120 Query: 102 DAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGA 161 A I + I + + ++V A+ + + ++++ + VV L G G Sbjct: 121 KAGIHAITTNARISGIEGA---SSVDANPYEQAGVNARAAIEQI-PQNAKVVVLDGPSGN 176 Query: 162 SVAIDRKKGF-AEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 220 A +R+K + E + P++KI+ Q ++ + + + ME +I++ I V + N Sbjct: 177 FHADERRKSWQKEFFEKRPDVKIVGEQIANWNKDEAMKYMEDWIQSN---DKIDAVISMN 233 Query: 221 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDAL 280 D+M GAI+ +K+ K++L +DG + + +G+ ++ + Sbjct: 234 DNMAAGAIEVVKDN--PKFKNMLAYGVDGTAEALLLIQEGKMTSTCMQSAYDLATKLLES 291 Query: 281 EKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMG 317 G + T + L D ++ ++ K G Sbjct: 292 GNKLLTGGEKQIDTDIGNPLVNKDNVQQYIDILKKSG 328 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 13/311 (4%) Query: 1 MWKR-LLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 M R + ++ A +SS ALA L + G + + ++ A++ G Sbjct: 42 MKTRHFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYV 101 Query: 60 DG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 + + QI+ V + +AQ + + +A + A P+++ A I V D I+ Sbjct: 102 GPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSD 161 Query: 118 DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIK- 176 + ++ V +N G D L +VN K V + G S AI+R +GF E +K Sbjct: 162 ---IPVSFVATNNRKAGAQAADALASQVNNK-GKVGIIAHVAGTSSAIERSEGFMERMKE 217 Query: 177 NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGL 236 P+IK++ Q D K + I+A ++ +Y N+ +G AI L Sbjct: 218 KYPDIKVLPVQYSDGDPQKAMDKTIDMIQAN---PDLAGIYGTNEGSTLGVANAIDSQNL 274 Query: 237 KPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLT 296 K + D I + +G V G G EK Sbjct: 275 KG--KVKVIGFDSTEAIINFLKNGVIQGFVVQDAYQIGYQGIKTLNAALSGQAVEKEIDI 332 Query: 297 KSTLYLPDTAK 307 + Sbjct: 333 PVKFVNAENIN 343 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.171 0.477 Lambda K H 0.267 0.0526 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,067,395,656 Number of Sequences: 3077464 Number of extensions: 103396711 Number of successful extensions: 335406 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 5598 Number of HSP's successfully gapped in prelim test: 3821 Number of HSP's that attempted gapping in prelim test: 310853 Number of HSP's gapped (non-prelim): 10361 length of query: 318 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 190 effective length of database: 646,480,964 effective search space: 122831383160 effective search space used: 122831383160 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 94 (40.5 bits)