HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/eb245db961c269a8/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/eb245db961c269a8/query.hhm DATE Tue Jan 17 15:08:14 2012 LENG 96 match states, 96 columns in multiple alignment FILT 73 out of 75 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4130 0.2292 SEQ >ss_pred CCCEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHCCHHHHCCCCCHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC >ss_conf 986069999995598319999983998808999986282775777874547324733554825620249899997466479889999998863059 >Consensus mxxxixVxVxyAxpxxqxxxxlxvxxGtTvxxAixxSgilxxxpeidlxxxxvGIfgkxxxxdxxLxxGDRIEIYRPLxxDPKexRrxRaxxxxxk >batch____ MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK >UniRef50_A1WTS1(12-104:105) Putative uncharacterized protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTS1_HALHL E=2e-09 s/c=0.68 id=33% cov=97% --GPLEVSVAYVEAGEHFWRCFQVPAGTNAAQAVARSGLQQRFPHLDLSTLKLGVFAKPVKADRVLEDGDRVEVYRPITADPEALASDRDTEEA-- >UniRef50_A8PKH9(5-94:98) Protein RnfH n=1 Tax=Rickettsiella grylli RepID=A8PKH9_9COXI E=2e-24 s/c=1.26 id=34% cov=95% -----QVDVVFADRSGEKIISILVPPNTCILAAIKLSGILLHFPQIHFKKNKVGIFGKLCTLDTPINAGDRIEIYQPLLIDPKKIRVNRAQKQKT- >UniRef50_A4SYS4(6-99:116) Putative uncharacterized protein n=2 Tax=Polynucleobacter necessarius RepID=A4SYS4_POLSQ E=2e-15 s/c=0.89 id=32% cov=82% ---------------KQFQLMIPQEELATIGLALVKAGLAQSQDDPVLArKGCFGVFGKRKDWDSPIYEGDRLELYSPLLIDPKTVRRKKANQN--- >UniRef50_Q1QE30(27-133:134) Putative uncharacterized protein n=2 Tax=Psychrobacter RepID=Q1QE30_PSYCK E=9e-17 s/c=0.82 id=29% cov=96% VPQAIMITVylAYAEdAQSQHYLTLSVADGTTLYAALKQAGWLIQFEGLakwcdevidvavpTAKRWHVGIYAQKQPLNYQLQPFDRIEVYRSLSADPMS QRKSKSR----- >UniRef50_Q0AIG9(10-101:105) Putative uncharacterized protein n=2 Tax=Nitrosomonas RepID=Q0AIG9_NITEC E=9e-25 s/c=1.24 id=35% cov=97% ----IIIEIVAALTERHFIKRLQVPKGTLINQAIKLAEMKEFYPEIDCSTLKIGIYGKVACSETVLQQNDRIEIYRPLISDPKEKRKLKIKSEYNK >UniRef50_B2SGA5(1-93:101) Putative uncharacterized protein n=18 Tax=Francisella RepID=B2SGA5_FRATM E=4e-22 s/c=1.13 id=37% cov=97% ----MKIEVIYALANEQLSFFVEVDEVINVRQALKLLKITHKYPELgDIESLKVGVYSQLIDLDYQLKDRDRVEIYRNLTIDPKQARMLRAEQKRKK >UniRef50_D0IWZ2(5-104:120) Protein rnfH n=3 Tax=Comamonadaceae RepID=D0IWZ2_COMTE E=9e-23 s/c=1.07 id=32% cov=100% LPEVIDITVCIS-PCSGTVQEalLQLPAGSTVQQALDAVTASTALPDLQLPEplaGMVGIWGKVANPGQVLKHGDRLEVYRPLTVDPKVARRERFARQGA R >UniRef50_Q89AN0(2-84:86) UPF0125 protein bbp_234 n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=Y234_BUCBP E=9e-19 s/c=1.14 id=32% cov=88% ----ITITIVYFTNKIQHVKKIKLNIGTPVHEALKILQINIK------KNNKIGIYGELVSLNHILNNKDRLEIYRPLKINPRELRKQKINRK--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 2857 491 * * * * * * 2732 * * 1 0 * * * * * * 2792 0 0 P 2 * * * * * * * * * * * * 889 * * 2352 1919 * * * 2 0 * * * * * * 3076 0 0 G 3 1490 * 3167 2135 * 2390 * * * * * 4465 * 3860 * * * * * * 3 67 4465 * 1000 1000 * * 3552 1000 0 K 4 4184 * 5583 3747 * * * * 3882 5492 4080 3649 2936 3244 2675 * 2674 3813 * * 4 0 * * * * * * 3740 0 0 I 5 * * * * * * * 862 * 2622 2443 * * * * * * 3273 * * 5 0 * * * * * * 4298 0 0 A 6 4073 * 3992 4052 * 5227 3356 4939 2658 6599 5485 3494 4632 3561 3089 3615 4149 * * * 6 0 * * * * * * 4324 0 0 V 7 * * * * * * * 1225 * 5865 * * * * * * * 849 * * 7 0 * * * * * * 4324 0 0 E 8 4502 5826 4356 1189 * 4527 * 5823 6167 * 5650 * * 4813 * 3323 2296 * 5891 * 8 0 * * * * * * 4324 0 0 V 9 * * * * * * * 2515 * 3801 * * * * * * * 409 * * 9 33 5485 * 1000 1000 * * 4324 1000 0 A 10 1437 3129 * * 4134 * * 4919 * * * * * * * 6139 5167 1380 * * 10 0 * * * * * * 4324 0 0 Y 11 4772 * * * 3467 * 4162 5645 * 4678 * * * * * * * * 4960 462 11 26 5798 * 2000 415 * * 4324 1000 0 A 12 454 5752 * * 5527 4437 * 5843 * * * * * * * 3103 * 4326 * * 12 157 * 3281 * * * * 4337 0 0 L 13 4171 * 5056 3352 5407 * 6027 * * 1644 * 6052 3046 3769 3608 5599 3492 4670 5841 * 13 64 4533 * 0 * 0 * 4200 1606 2614 P 14 2756 * * 6283 * 3750 * * * 6247 * 4676 775 5837 4649 * 4608 5079 * * 14 0 * * * * * * 4337 0 0 E 15 4116 5653 2432 2278 * 3627 4834 6605 4541 * * 4055 4245 4326 * 3306 3513 * * 6597 15 0 * * * * * * 4337 0 0 K 16 * * 5829 3493 * 6047 5385 4233 2210 * * 6726 4794 4455 1444 3315 5263 * * * 16 16 6512 * 0 * * * 4384 1000 0 Q 17 4149 * * 4625 * 4032 4441 * * * * 5862 4562 642 5870 6264 5829 5244 * 5549 17 28 5689 * 0 * * * 4384 1000 0 Y 18 3804 5862 * 4223 3033 * 3738 4373 3723 3968 * 6064 * 5548 3643 5626 3535 2794 5300 3641 18 122 3628 * 442 1921 * * 4384 2038 0 L 19 * 5347 * 4794 * * * 2463 * 1461 5944 * * 2948 * 5274 * 3126 3853 4662 19 26 5782 * 0 * * * 4384 1000 0 Q 20 * 3674 * 5159 5120 * 5049 2674 3249 1748 6199 * * 4274 3866 6625 * 3894 4735 5246 20 63 4987 6496 0 * * * 4384 1527 0 R 21 3814 6138 5597 2673 5982 6052 * * 4035 * 5426 * 3337 3436 2548 2852 3043 * * * 21 46 4990 * 712 1359 0 * 4438 1474 1000 V 22 5895 5305 * 6313 3582 * * 2884 * 1110 3668 * * 6291 * * * 2542 * * 22 0 * * * * * * 4439 0 0 T 23 3721 * 2675 2672 * * 5291 * 4382 5190 6216 4746 4363 2744 4975 3724 3251 4363 * * 23 0 * * * * * * 4439 0 0 L 24 * * * * 6073 * * 5635 * 1408 4280 * * 5453 * * * 960 * * 24 0 * * * * * * 4439 0 0 Q 25 3296 * 3769 2833 * * * * 3890 6405 * 4135 1277 4010 * 5112 6291 4966 * * 25 54 4766 * 1000 1000 * * 4439 1602 0 E 26 2098 * 3620 1548 * 6589 * 4678 4644 5635 5906 4848 4064 4326 * 5496 5727 4985 * * 26 0 * * * * * * 4439 0 0 G 27 * * * * * 475 5958 * 4423 5453 * 3792 6117 6403 * 4267 5112 5995 * * 27 0 * * * * * * 4439 0 0 A 28 1598 3627 * * * * 5906 4774 * * 6073 * * * * 2882 1432 6117 * * 28 0 * * * * * * 4439 0 0 T 29 * 6079 * * * * * * * 4097 * 5066 5561 * 4904 3433 416 * * * 29 0 * * * * * * 4439 0 0 V 30 2175 * * * * * * 3117 * 2892 6058 * * * * * * 961 * * 30 16 6516 * 1000 1000 * * 4439 1000 0 E 31 3331 * 6313 2339 * 2774 5561 4626 4228 3728 * 5816 * 3238 2683 6289 * 5060 * 4993 31 0 * * * * * * 4439 0 0 E 32 3448 * 2043 2054 * * * * * 5453 * * * 1456 * 6505 6633 5920 * * 32 0 * * * * * * 4439 0 0 A 33 74 * * * * * * 6403 * * * * * * * 6319 * 5294 * * 33 0 * * * * * * 4439 0 0 I 34 4257 * * * * * * 1536 * 1526 * * * * * * * 1968 * * 34 0 * * * * * * 4439 0 0 R 35 3419 6482 5257 2857 * 5239 5304 4214 2631 3509 * 5142 * 2374 3697 * 6633 3881 * * 35 0 * * * * * * 4439 0 0 A 36 1416 5727 * 4042 * * * 5561 3690 3137 5394 6291 * 2723 3648 4263 6200 * * * 36 0 * * * * * * 4439 0 0 S 37 2994 5019 * * * * * 5261 * 4762 * * * * * 430 5648 5771 * * 37 0 * * * * * * 4439 0 0 G 38 4404 * * 5816 * 494 * * 4399 * * 4750 5285 4483 6624 5145 4972 * * * 38 0 * * * * * * 4439 0 0 L 39 4788 * * * 5239 5019 * 1290 * 1764 3959 * * * * * * 3632 4104 * 39 20 * 6216 * * * * 4439 0 0 L 40 3685 6384 5624 * 4905 5355 * 4907 5770 1075 6185 5549 4248 3915 * 4034 4333 6479 * 5061 40 0 * * * * * 0 4430 0 1000 E 41 4750 * 4168 1864 * 4800 5230 4554 4416 6063 * 3576 * 2526 3986 3393 4330 * * * 41 48 * 4939 * * * 0 4430 0 1000 L 42 3629 6664 4996 3539 4032 * 4541 4145 2766 3415 5957 * * 2436 3216 5379 5841 4626 * * 42 120 5696 4041 2807 222 * 0 4406 1000 1824 R 43 6164 3635 * * 1152 * 3632 * * 3843 * * * 4669 3675 * 5450 * * 2602 43 0 * * * * 2293 329 4315 0 2626 T 44 4807 * 3817 4440 * * 6595 5155 * * * 5501 520 5925 * 4902 5647 5667 * * 44 0 * * * * 1349 719 4344 0 2360 D 45 5307 * 1975 1275 * 3947 4793 * * * * 5199 * 2835 5575 * * 5806 * * 45 58 * 4663 * * * 0 4383 0 1957 I 46 4889 * 5215 * * 5451 * 1117 5868 1570 * * 5387 * 6262 * * 3953 * * 46 149 4096 4659 2854 215 1304 749 4335 1995 2534 D 47 * * 886 5558 * 5634 5919 6195 5695 5200 * 3345 * 4150 5611 3952 4301 4315 * * 47 20 6208 * 1585 585 2366 311 4327 1000 2443 L 48 3534 5750 * * 4051 4835 * 3224 5660 978 * * 4385 * 6828 * 5637 4031 5188 * 48 42 5137 * 3006 192 0 * 4351 1507 2310 T 49 3343 * 2883 3651 5648 4264 4088 4246 3329 * * 4968 4914 4965 3657 3155 3344 * 5958 * 49 58 5453 5895 0 * * * 4439 1000 0 K 50 3312 6650 5209 2639 * * 4570 * 2616 * * 4167 5790 3623 3513 3746 2915 4418 * * 50 88 4436 6286 911 1095 * 0 4424 1878 1000 N 51 2752 4691 * * 6235 4578 3898 4738 * 2264 5644 2262 * 3620 5255 5888 * 5676 4253 5639 51 0 * * * * * 0 4422 0 1562 K 52 4644 5433 5601 5593 * 5932 5540 5898 1419 4433 5740 * 2848 6047 3214 4414 4287 5355 5839 * 52 0 * * * * 0 * 4422 0 1562 V 53 5886 5019 * * 4880 * * 2973 * 2175 4816 * * * * * 6200 1018 * 5229 53 0 * * * * * * 4439 0 0 G 54 5261 * * * * 73 * * * * * * * * * 5410 * * * * 54 20 6216 * 1000 1000 * * 4439 1000 0 I 55 * * * * * * * 610 * * * * * * * * * 1536 * * 55 0 * * * * * * 4439 0 0 Y 56 * * 5229 * 908 * 5920 * * * * * * * * * * * 2534 1992 56 0 * * * * * * 4439 0 0 S 57 3696 * * * * 640 * * * * * 3776 * * * 2266 * * * * 57 0 * * * * * * 4439 0 0 R 58 6394 * * 5561 * * 5648 * 1062 4748 * * * 2822 1938 * * 5143 * * 58 33 5484 * 1000 1000 * * 4439 1401 0 P 59 3313 * * * 4655 * 6683 3623 2668 2294 * * 2950 5507 3305 6482 4146 4030 * 5261 59 0 * * * * * * 4439 0 0 A 60 2782 3270 * 5451 * * * 4031 3111 5072 * * * 5569 4981 5886 4820 1264 * * 60 48 4922 * 1000 1000 * * 4439 1584 0 K 61 3292 5816 4097 4642 * 4055 5635 * 1920 5866 5229 5771 2845 * 4014 3975 3180 * * * 61 15 6624 * 1000 1000 * * 4439 1000 0 L 62 3055 * 4619 4157 4216 * * * 6597 1089 * 5287 3222 * * 5002 5332 5875 4547 * 62 14 6674 * 1000 1000 * * 4439 1000 0 S 63 6688 * 1020 3246 * 4073 5068 * 3681 * * 4013 * 4164 * 3791 4852 * * * 63 0 * * * * * * 4439 0 0 D 64 2760 * 3355 5470 5635 * 2768 * * * 5261 5983 * 3175 3976 4259 2258 * * 3513 64 0 * * * * * * 4439 0 0 S 65 4381 * * 3746 * 5920 * 4398 5635 5092 * * 2507 4766 4900 4617 4440 1214 * * 65 0 * * * * * * 4439 0 0 V 66 * * * * * * * 3525 * 282 * * 5906 * * * * 3752 * * 66 0 * * * * * * 4439 0 0 H 67 4432 * 5727 3321 * * 3602 * 2466 * * 3201 * 2496 2000 6311 * * * 5453 67 0 * * * * * * 4439 0 0 D 68 2802 * 1594 1797 * * 4788 * * * * 3658 4793 5816 * 4777 4977 * * * 68 0 * * * * * * 4439 0 0 G 69 * * * * 5569 429 3436 * 4213 5805 * 4771 * * 4821 * * * * * 69 0 * * * * * * 4439 0 0 D 70 6335 * 68 4897 * * * * * * * * * * * * * * * * 70 0 * * * * * * 4439 0 0 R 71 * * * * * * * * * * * * * * 0 * * * * * 71 0 * * * * * * 4439 0 0 V 72 * * * * * * * 1113 * 3357 * * * * * * * 1184 * * 72 0 * * * * * * 4439 0 0 E 73 * * 5229 39 * * * * * * * * * * * * * * * * 73 0 * * * * * * 4439 0 0 I 74 * * * * * * * 434 * 3474 * * * * * * * 2849 5019 * 74 0 * * * * * * 4439 0 0 Y 75 * 5229 * * * * * * * 3987 * * * * * * 5785 * 5886 192 75 0 * * * * * * 4439 0 0 R 76 * * 5261 * * 5785 * * * 6117 * * * 4732 183 5453 * * * * 76 0 * * * * * * 4439 0 0 P 77 4407 * 5404 * * 5258 * * 5107 * * 4797 326 * * 5562 5723 * * * 77 0 * * * * * * 4442 0 0 L 78 5805 * * * * * * 4014 * 120 * * * * * * * * * * 78 0 * * * * * * 4373 0 0 I 79 6377 * 5899 * * * * 2190 3471 2678 * * 6087 4392 3577 3874 2079 4193 * * 79 0 * * * * * * 4373 0 0 A 80 1530 6632 * * 4537 5807 * 1877 * 4546 5882 * * * 6090 5816 5590 2340 * * 80 0 * * * * * * 4330 0 0 D 81 * * 195 * * * * * 4941 * * 3772 * * * * 5590 * * * 81 0 * * * * * * 4330 0 0 P 82 * * * * * * * * * * * * 0 * * * * * * * 82 0 * * * * * * 4330 0 0 K 83 * * * 5856 * * * 5482 361 * 3445 * * 4607 4359 * * * * * 83 0 * * * * * * 4330 0 0 E 84 4829 * 3444 1172 * * * * 3567 4417 * 5617 * 3587 5805 5544 3599 3787 * * 84 0 * * * * * * 4305 0 0 L 85 1364 * * * * * * 3132 3420 3913 4830 6006 * 5478 5158 3285 * 3150 5558 * 85 48 4942 * 2065 394 * * 4348 1490 0 R 86 4840 * * 5536 * * * 5990 6037 * * * 5913 * 158 * * * * * 86 0 * * * * * * 4305 0 0 R 87 * * * * * * * * 2278 4181 5709 * * 6504 579 5627 * 5709 * * 87 0 * * * * * * 4313 0 0 Q 88 5343 * 5568 3311 * * * 5102 1999 2637 * 3630 5438 2616 3285 5402 * 5631 * * 88 0 * * * * * * 4301 0 0 R 89 5403 * * * * * * * 3189 4472 * * * 5886 313 * * * * * 89 19 6225 * 3700 115 * * 4264 1000 0 A 90 599 * 5120 * 3132 * * 4341 * 5766 * * * * * 4205 * 3737 * * 90 0 * * * * * * 4206 0 0 E 91 1865 * 4965 2279 * * * * 2568 * * 4077 * 2917 3368 * 5046 * * * 91 0 * * * * * * 4172 0 0 K 92 4735 * * 3132 * * 4064 * 1431 * * * * 2713 2278 4082 * * * * 92 0 * * * * * * 4091 0 0 S 93 3300 * 5230 3376 * * * * 2284 * 5368 3169 * 2358 * 2628 4504 4882 * * 93 0 * * * * * * 4121 0 0 A 94 1929 * * * * 2377 * * 1565 * * 4941 * * 2943 * * * * 4495 94 0 * * * * * * 3779 0 0 N 95 2588 * * 2078 * * * * 2702 * * 3269 4160 4866 * 3922 2771 4769 * * 95 0 * * * * * * 3725 0 0 K 96 * * * * * * * * 579 * * * * * 1596 * * * * * 96 0 * * 0 * * * 3478 0 0 //