BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (261 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P54702 Flagellar biosynthetic protein fliR n=162 Tax=En... 428 e-118 UniRef50_B2AIF6 Flagellar biosynthetic protein fliR n=24 Tax=Pro... 229 7e-59 UniRef50_Q1QW39 Flagellar biosynthetic protein fliR n=1 Tax=Chro... 223 5e-57 UniRef50_Q3SIG3 Flagellar biosynthetic protein fliR n=41 Tax=Bet... 200 3e-50 UniRef50_A1WCC7 Flagellar biosynthetic protein fliR n=8 Tax=Burk... 192 1e-47 UniRef50_C6P5I0 Flagellar biosynthetic protein fliR n=1 Tax=Side... 185 1e-45 UniRef50_Q89AZ0 Flagellar biosynthetic protein fliR n=1 Tax=Buch... 185 1e-45 UniRef50_Q0AEE8 Flagellar biosynthetic protein fliR n=5 Tax=Beta... 183 5e-45 UniRef50_A6SXX2 Flagellar biosynthetic protein fliR n=3 Tax=Oxal... 183 5e-45 UniRef50_Q8KA35 Flagellar biosynthetic protein fliR n=4 Tax=Buch... 181 2e-44 UniRef50_B9NJ47 Predicted protein n=6 Tax=cellular organisms Rep... 179 7e-44 UniRef50_A1K939 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 179 9e-44 UniRef50_Q47I14 Flagellar biosynthetic protein fliR n=1 Tax=Dech... 179 1e-43 UniRef50_C6NWP1 Flagellar biosynthetic protein fliR n=1 Tax=Acid... 178 1e-43 UniRef50_B2UJU2 Flagellar biosynthetic protein fliR n=6 Tax=Rals... 172 1e-41 UniRef50_A6GTX6 Flagellar biosynthetic protein fliR n=1 Tax=Limn... 171 2e-41 UniRef50_A1U244 Flagellar biosynthetic protein fliR n=8 Tax=Gamm... 169 8e-41 UniRef50_C7I0T6 Flagellar biosynthetic protein fliR n=1 Tax=Thio... 169 8e-41 UniRef50_Q8D3F3 Flagellar biosynthetic protein fliR n=1 Tax=Wigg... 168 2e-40 UniRef50_Q31HN5 Flagellar biosynthetic protein fliR n=1 Tax=Thio... 168 2e-40 UniRef50_B8GQZ8 Flagellar biosynthetic protein fliR n=2 Tax=Thio... 164 2e-39 UniRef50_C5S861 Flagellar biosynthetic protein fliR n=1 Tax=Allo... 164 4e-39 UniRef50_D0KYN9 Flagellar biosynthetic protein fliR n=1 Tax=Halo... 163 6e-39 UniRef50_Q4ZQU8 Flagellar biosynthetic protein fliR n=20 Tax=Pse... 162 7e-39 UniRef50_B3PF02 Flagellar biosynthetic protein fliR n=1 Tax=Cell... 161 2e-38 UniRef50_A1WUA7 Flagellar biosynthetic protein fliR n=3 Tax=Ecto... 160 3e-38 UniRef50_Q1GZV4 Flagellar biosynthetic protein fliR n=3 Tax=Meth... 160 3e-38 UniRef50_A4BIP6 Flagellar biosynthetic protein fliR n=1 Tax=Rein... 159 8e-38 UniRef50_B9Z788 Flagellar biosynthetic protein fliR n=1 Tax=Luti... 155 1e-36 UniRef50_C1DAZ1 Flagellar biosynthetic protein fliR n=1 Tax=Lari... 151 2e-35 UniRef50_Q12PK2 Flagellar biosynthetic protein fliR n=8 Tax=Gamm... 150 4e-35 UniRef50_Q21IP9 Flagellar biosynthetic protein fliR n=2 Tax=Alte... 150 5e-35 UniRef50_Q2BJ96 Flagellar biosynthetic protein fliR n=1 Tax=Nept... 149 1e-34 UniRef50_A5F6D9 Flagellar biosynthetic protein fliR n=62 Tax=Vib... 147 2e-34 UniRef50_Q1N2V1 Flagellar biosynthetic protein fliR n=1 Tax=Berm... 147 3e-34 UniRef50_C7RLB3 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 147 3e-34 UniRef50_B8CKZ1 Flagellar biosynthetic protein fliR n=22 Tax=Gam... 147 4e-34 UniRef50_Q7NTD4 Flagellar biosynthetic protein fliR n=1 Tax=Chro... 147 5e-34 UniRef50_Q485K9 Flagellar biosynthetic protein fliR n=8 Tax=Alte... 139 7e-32 UniRef50_Q3J976 Flagellar biosynthetic protein fliR n=3 Tax=Gamm... 139 1e-31 UniRef50_Q1YV75 Flagellar biosynthetic protein fliR n=1 Tax=gamm... 132 1e-29 UniRef50_C8W1H1 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 131 2e-29 UniRef50_Q2RKD3 Flagellar biosynthetic protein fliR n=1 Tax=Moor... 131 2e-29 UniRef50_B5EEM8 Flagellar biosynthetic protein fliR n=2 Tax=Geob... 130 7e-29 UniRef50_B8CYQ1 Flagellar biosynthetic protein fliR n=1 Tax=Halo... 129 9e-29 UniRef50_C8WBS9 Flagellar biosynthetic protein fliR n=3 Tax=Zymo... 129 1e-28 UniRef50_A6F9S0 Flagellar biosynthetic protein fliR n=1 Tax=Mori... 127 3e-28 UniRef50_A4A5Y4 Flagellar biosynthetic protein fliR n=3 Tax=uncl... 126 9e-28 UniRef50_C0ZF83 Flagellar biosynthetic protein fliR n=1 Tax=Brev... 125 2e-27 UniRef50_Q3V7F9 Flagellar biosynthetic protein fliR n=5 Tax=Legi... 124 3e-27 UniRef50_B0THC2 Flagellar biosynthetic protein fliR n=1 Tax=Heli... 124 4e-27 UniRef50_Q3V7I9 Flagellar biosynthetic protein fliR n=7 Tax=Vibr... 121 3e-26 UniRef50_B2A364 Flagellar biosynthetic protein fliR n=1 Tax=Natr... 121 3e-26 UniRef50_A6TRN9 Flagellar biosynthetic protein fliR n=2 Tax=Alka... 120 3e-26 UniRef50_C4V4A3 Flagellar biosynthetic protein fliR n=3 Tax=Sele... 120 4e-26 UniRef50_Q5DY35 Flagellar biosynthetic protein fliR n=37 Tax=Ent... 119 8e-26 UniRef50_Q30PK9 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 119 1e-25 UniRef50_B3EAW1 Flagellar biosynthetic protein fliR n=7 Tax=Desu... 119 1e-25 UniRef50_Q97H65 FliR/FlhB fusion protein n=1 Tax=Clostridium ace... 118 2e-25 UniRef50_Q0EZ56 Flagellar biosynthetic protein fliR n=1 Tax=Mari... 118 2e-25 UniRef50_A1HN22 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 117 4e-25 UniRef50_C6IVX3 Flagellar biosynthetic protein fliR n=2 Tax=Baci... 116 6e-25 UniRef50_A4SI10 Flagellar biosynthetic protein fliR n=4 Tax=Gamm... 116 6e-25 UniRef50_A4Y0Q5 Flagellar biosynthetic protein fliR n=1 Tax=Pseu... 116 7e-25 UniRef50_B8I3N6 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 116 1e-24 UniRef50_A5V2S0 Flagellar biosynthetic protein fliR n=3 Tax=Sphi... 115 1e-24 UniRef50_B1I5J9 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 115 2e-24 UniRef50_C6BYP0 Flagellar biosynthetic protein fliR n=4 Tax=Desu... 114 3e-24 UniRef50_A3V236 Flagellar biosynthetic protein fliR n=3 Tax=Rhod... 114 3e-24 UniRef50_Q2LT08 Flagellar biosynthetic protein fliR n=1 Tax=Synt... 114 5e-24 UniRef50_Q4JMS6 Flagellar biosynthetic protein fliR n=1 Tax=uncu... 114 5e-24 UniRef50_B0RSX9 Flagellar biosynthetic protein fliR n=13 Tax=Xan... 113 5e-24 UniRef50_C1SNG7 Flagellar biosynthetic protein fliR n=1 Tax=Deni... 113 7e-24 UniRef50_A4J751 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 113 8e-24 UniRef50_UPI0001C312BD flagellar biosynthetic protein FliR n=1 T... 112 1e-23 UniRef50_A4YB60 Flagellar biosynthetic protein fliR n=18 Tax=Gam... 112 1e-23 UniRef50_B6AMB3 Flagellar biosynthetic protein fliR n=1 Tax=Lept... 111 2e-23 UniRef50_C8WYW7 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 111 2e-23 UniRef50_C1A548 Flagellar biosynthetic protein FliR n=1 Tax=Gemm... 110 3e-23 UniRef50_B6BI91 Flagellar biosynthetic protein fliR n=1 Tax=Camp... 110 4e-23 UniRef50_C8PRD8 Flagellar biosynthetic protein fliR n=1 Tax=Trep... 110 6e-23 UniRef50_C4Z5H7 Flagellar biosynthetic protein fliR n=3 Tax=Bact... 109 8e-23 UniRef50_A9KNE1 Flagellar biosynthetic protein fliR n=1 Tax=Clos... 108 2e-22 UniRef50_A1T0L3 Flagellar biosynthetic protein fliR n=4 Tax=Gamm... 108 2e-22 UniRef50_A3DCP2 Flagellar biosynthetic protein fliR n=3 Tax=Clos... 108 2e-22 UniRef50_Q0AYL9 Flagellar biosynthetic protein fliR n=1 Tax=Synt... 107 3e-22 UniRef50_C7R0I3 Flagellar biosynthetic protein fliR n=2 Tax=Micr... 107 5e-22 UniRef50_A6W0V6 Flagellar biosynthetic protein fliR n=2 Tax=Mari... 105 1e-21 UniRef50_A5D0I0 Flagellar biosynthetic protein fliR n=1 Tax=Pelo... 105 1e-21 UniRef50_B8FTQ3 Flagellar biosynthetic protein fliR n=2 Tax=Desu... 105 2e-21 UniRef50_D0WZK5 Flagellar biosynthetic protein fliR n=1 Tax=Vibr... 104 3e-21 UniRef50_B1K3A1 Flagellar biosynthetic protein fliR n=3 Tax=Beta... 104 4e-21 UniRef50_A1SEN1 Flagellar biosynthetic protein fliR n=1 Tax=Noca... 103 4e-21 UniRef50_A9BHY5 Flagellar biosynthetic protein fliR n=1 Tax=Petr... 103 4e-21 UniRef50_UPI00016952B2 flagellar biosynthesis protein FliR n=1 T... 103 6e-21 UniRef50_B0P9X4 Flagellar biosynthetic protein fliR n=1 Tax=Anae... 103 7e-21 UniRef50_B8DQ95 Flagellar biosynthetic protein fliR n=7 Tax=Desu... 103 7e-21 UniRef50_C0GJG4 Flagellar biosynthetic protein fliR n=1 Tax=Deth... 103 8e-21 UniRef50_A8U5W1 Flagellar biosynthetic protein fliR n=1 Tax=Carn... 103 8e-21 UniRef50_UPI0001BC2FF2 flagellar biosynthetic protein FliR n=1 T... 102 2e-20 UniRef50_C0QXX3 Flagellar biosynthetic protein fliR n=2 Tax=Brac... 101 3e-20 UniRef50_A8F4V7 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 101 3e-20 UniRef50_B9KJE3 Flagellar biosynthetic protein fliR n=4 Tax=Rhod... 100 4e-20 UniRef50_C9XJ38 Flagellar export protein n=7 Tax=Bacteria RepID=... 100 4e-20 UniRef50_C3XEY7 Flagellar biosynthetic protein fliR n=1 Tax=Heli... 99 1e-19 UniRef50_A4WT32 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 99 2e-19 UniRef50_Q2ITJ3 Flagellar biosynthetic protein fliR n=15 Tax=Bra... 98 2e-19 UniRef50_A5I580 Flagellar biosynthetic protein n=19 Tax=Bacteria... 98 3e-19 UniRef50_C5RFV5 Flagellar biosynthetic protein FlhB n=1 Tax=Clos... 97 5e-19 UniRef50_B0K9T0 Flagellar biosynthetic protein fliR n=11 Tax=The... 97 6e-19 UniRef50_A3NFU9 Flagellar biosynthesis pathway, component FliR n... 97 6e-19 UniRef50_Q2RZE7 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 97 6e-19 UniRef50_Q3A5E4 Flagellar biosynthetic protein fliR n=3 Tax=Delt... 97 6e-19 UniRef50_C6D2V4 Flagellar biosynthetic protein fliR n=1 Tax=Paen... 97 7e-19 UniRef50_C0C1N5 Flagellar biosynthetic protein fliR n=1 Tax=Clos... 97 7e-19 UniRef50_Q3V7R2 Flagellar biosynthetic protein fliR n=1 Tax=Bdel... 96 9e-19 UniRef50_C1TKH9 Flagellar biosynthesis pathway, component FliR n... 96 1e-18 UniRef50_UPI00016C0EEE flagellar biosynthesis protein FliR n=1 T... 96 1e-18 UniRef50_P35537 Flagellar biosynthetic protein fliR n=20 Tax=Bac... 96 2e-18 UniRef50_A5P6J2 Flagellar biosynthetic protein fliR n=1 Tax=Eryt... 96 2e-18 UniRef50_C4G685 Flagellar biosynthetic protein fliR n=1 Tax=Abio... 96 2e-18 UniRef50_C0QA54 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 95 2e-18 UniRef50_Q1IR58 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 95 3e-18 UniRef50_B0MPC9 Putative uncharacterized protein n=1 Tax=Eubacte... 94 4e-18 UniRef50_A6LLB0 Flagellar biosynthetic protein fliR n=2 Tax=Ther... 92 2e-17 UniRef50_B9Z4S1 Flagellar biosynthetic protein fliR n=1 Tax=Luti... 92 2e-17 UniRef50_B8HEJ0 Flagellar biosynthetic protein fliR n=1 Tax=Arth... 91 3e-17 UniRef50_C6XLQ1 Flagellar biosynthetic protein fliR n=1 Tax=Hirs... 91 3e-17 UniRef50_B2TLW3 Flagellar biosynthetic protein FliR/FlhB n=6 Tax... 91 4e-17 UniRef50_Q1NP89 Type III secretion system inner membrane R prote... 91 4e-17 UniRef50_C6N719 Putative flagellar biosynthesis pathway, compone... 91 4e-17 UniRef50_A3ZNZ1 Probable flagellar biosynthetic protein fliR n=1... 90 8e-17 UniRef50_B4RGX9 Flagellar biosynthetic protein fliR n=3 Tax=Caul... 89 1e-16 UniRef50_D1B6A7 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 89 1e-16 UniRef50_O67773 Flagellar biosynthetic protein fliR n=1 Tax=Aqui... 89 1e-16 UniRef50_A0RQU4 Flagellar biosynthetic protein fliR n=23 Tax=Cam... 89 2e-16 UniRef50_D1AZH9 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 89 2e-16 UniRef50_B0SDH1 Flagellar biosynthetic protein fliR n=6 Tax=Lept... 89 2e-16 UniRef50_B1ZR30 Type III secretion system inner membrane R prote... 89 2e-16 UniRef50_Q3V824 Flagellar biosynthetic protein fliR n=4 Tax=Baci... 88 2e-16 UniRef50_C9R9Y0 Type III secretion system inner membrane R prote... 88 2e-16 UniRef50_C4ZAM9 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 88 3e-16 UniRef50_Q45975 Flagellar biosynthetic protein fliR n=3 Tax=Caul... 87 6e-16 UniRef50_B8FK33 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 87 6e-16 UniRef50_A8RW99 Putative uncharacterized protein n=1 Tax=Clostri... 87 6e-16 UniRef50_C2KYZ8 Possible flagellar biosynthesis protein FliR n=1... 87 7e-16 UniRef50_A7HWA0 Flagellar biosynthetic protein fliR n=1 Tax=Parv... 86 1e-15 UniRef50_D2S978 Flagellar biosynthetic protein FliR n=1 Tax=Geod... 86 1e-15 UniRef50_C6WJP4 Type III secretion system inner membrane R prote... 85 2e-15 UniRef50_Q1Q6S6 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 85 3e-15 UniRef50_C5CXN3 Type III secretion system inner membrane R prote... 84 3e-15 UniRef50_D2C589 Flagellar biosynthetic protein fliR n=6 Tax=Ther... 84 4e-15 UniRef50_A6M184 Flagellar biosynthetic protein FlhB n=4 Tax=Bact... 84 5e-15 UniRef50_A4XIZ3 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 84 6e-15 UniRef50_B9L8B4 Flagellar biosynthetic protein fliR n=1 Tax=Naut... 84 6e-15 UniRef50_C6HWM1 Flagellar biosynthesis protein FliR n=1 Tax=Lept... 84 7e-15 UniRef50_Q7UXG3 Probable flagellar biosynthetic protein fliR n=1... 83 9e-15 UniRef50_A3WGR2 Flagellar protein FliR n=1 Tax=Erythrobacter sp.... 83 1e-14 UniRef50_C4XT80 Flagellar biosynthetic protein fliR n=2 Tax=Desu... 82 1e-14 UniRef50_C0A797 Type III secretion system inner membrane R prote... 81 3e-14 UniRef50_Q3V817 Flagellar biosynthetic protein n=1 Tax=Symbiobac... 81 4e-14 UniRef50_A0L3J6 Flagellar biosynthetic protein fliR n=1 Tax=Magn... 81 4e-14 UniRef50_A8URB1 Flagellar biosynthetic protein fliR n=1 Tax=Hydr... 80 5e-14 UniRef50_Q3ADD0 Flagellar biosynthetic protein FliR n=1 Tax=Carb... 80 8e-14 UniRef50_C9A930 Flagellar biosynthetic protein fliR n=4 Tax=Ente... 80 8e-14 UniRef50_A0LT72 Type III secretion system inner membrane R prote... 79 2e-13 UniRef50_C1DW36 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 78 3e-13 UniRef50_C3XLD0 Flagellar biosynthetic protein fliR n=2 Tax=Heli... 77 5e-13 UniRef50_C2ED98 Flagellar biosynthetic protein fliR n=1 Tax=Lact... 77 7e-13 UniRef50_A9AP22 Type III secretion protein SctT n=18 Tax=Burkhol... 77 8e-13 UniRef50_Q2RQH6 Flagellar biosynthetic protein fliR n=1 Tax=Rhod... 76 1e-12 UniRef50_P74932 Flagellar biosynthetic protein fliR n=3 Tax=Trep... 76 1e-12 UniRef50_C2KTP9 Flagellar biosynthesis protein FliR n=3 Tax=Mobi... 75 2e-12 UniRef50_B5YIZ0 Putative flagellar biosynthetic protein-like pro... 74 3e-12 UniRef50_Q01PP9 Type III secretion system inner membrane R prote... 74 4e-12 UniRef50_Q2W9Q3 Flagellar biosynthetic protein fliR n=3 Tax=Magn... 74 4e-12 UniRef50_C1F995 Flagellar biosynthetic protein fliR n=1 Tax=Acid... 74 6e-12 UniRef50_D1R8P1 Putative type III secretion inner membrane prote... 74 7e-12 UniRef50_C5EFG8 Bifunctional flagellar biosynthesis protein FliR... 73 1e-11 UniRef50_A6DDV7 Flagellar biosynthetic protein fliR n=1 Tax=Cami... 72 1e-11 UniRef50_Q17YT4 Flagellar biosynthetic protein fliR n=18 Tax=Hel... 72 3e-11 UniRef50_C7C777 Flagellar biosynthetic protein fliR n=8 Tax=Meth... 71 4e-11 UniRef50_B6AV41 Flagellar biosynthetic protein FliR n=1 Tax=Rhod... 70 5e-11 UniRef50_Q0ANB4 Flagellar biosynthetic protein fliR n=2 Tax=Hyph... 70 5e-11 UniRef50_A8LMR5 Flagellar biosynthesis protein FliR n=1 Tax=Dino... 70 6e-11 UniRef50_Q3V884 Flagellar biosynthetic protein FliR n=16 Tax=Lis... 70 7e-11 UniRef50_C0QP99 Flagellar biosynthetic protein FliR n=3 Tax=Hydr... 70 8e-11 UniRef50_B8JD81 Type III secretion system inner membrane R prote... 70 9e-11 UniRef50_A0NPF3 Flagellar biosynthetic protein fliR n=3 Tax=Rhod... 70 1e-10 UniRef50_C4L639 Flagellar biosynthetic protein fliR n=2 Tax=Exig... 69 1e-10 UniRef50_C4K6D9 Type III needle complex export protein n=2 Tax=C... 69 2e-10 UniRef50_A6Q2N9 Flagellar biosynthetic protein fliR n=1 Tax=Nitr... 69 2e-10 UniRef50_A8TPM4 Flagellar biosynthetic protein fliR n=1 Tax=alph... 68 3e-10 UniRef50_A7HLM8 Type III secretion system inner membrane R prote... 68 4e-10 UniRef50_C7DF44 Flagellar biosynthetic protein FliR n=1 Tax=Thal... 67 4e-10 UniRef50_UPI000169930B flagellar biosynthesis protein FliR n=1 T... 67 5e-10 UniRef50_Q1D9K4 FliR/MopE/SpaR family protein n=2 Tax=Cystobacte... 67 6e-10 UniRef50_Q21AA3 Type III secretion system inner membrane R prote... 67 6e-10 UniRef50_B9L5A9 Flagellar biosynthetic protein fliR n=2 Tax=Ther... 67 7e-10 UniRef50_Q2SEX2 Flagellar biosynthesis pathway, component FliR n... 67 7e-10 UniRef50_A9HH75 Putative flagellar biosynthetic protein fliR n=2... 67 8e-10 UniRef50_Q1NCV3 Translocation protein in type III secretion n=1 ... 66 1e-09 UniRef50_A6CEQ7 Flagellar biosynthetic protein fliR/B n=1 Tax=Pl... 66 2e-09 UniRef50_D2TZ37 Type III secretion apparatus protein SpaR,YscT,H... 65 3e-09 UniRef50_C5SN71 Flagellar biosynthetic protein fliR n=2 Tax=Caul... 65 3e-09 UniRef50_D1ZYN3 Whole genome shotgun sequence assembly, contig_4... 65 3e-09 UniRef50_A6W8L5 Flagellar biosynthetic protein fliR n=1 Tax=Kine... 64 4e-09 UniRef50_A3SFT0 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 64 5e-09 UniRef50_B9KQI0 Type III secretion system inner membrane R prote... 64 5e-09 UniRef50_C1ZEF5 Flagellar biosynthesis pathway, component FliR n... 64 6e-09 UniRef50_Q6MES5 Putative type III secretion inner membrane prote... 63 8e-09 UniRef50_B5JK51 Bacterial export protein, family 1 n=1 Tax=Verru... 63 1e-08 UniRef50_A5VVZ1 Flagellar biosynthetic protein fliR n=3 Tax=Bruc... 62 2e-08 UniRef50_A3VS80 Flagellar biosynthesis pathway, component FliR n... 62 2e-08 UniRef50_D2R542 Type III secretion system inner membrane R prote... 62 2e-08 UniRef50_UPI00016C3B59 flagellar biosynthesis protein FliR n=1 T... 62 3e-08 UniRef50_C8WWG4 Type III secretion system inner membrane R prote... 61 3e-08 UniRef50_Q28JK8 Flagellar biosynthetic protein FliR n=1 Tax=Jann... 61 3e-08 UniRef50_C6XF32 Flagellar biosynthesis protein FliR n=1 Tax=Cand... 61 3e-08 UniRef50_A5G0E7 Type III secretion system inner membrane R prote... 61 3e-08 UniRef50_A3W5F7 Flagellar biosynthetic protein FliR n=3 Tax=Rhod... 61 3e-08 UniRef50_B3RAC7 SctT: non flagellar T3S system conserved inner m... 61 4e-08 UniRef50_A6U663 Flagellar biosynthetic protein fliR n=7 Tax=Rhiz... 61 5e-08 UniRef50_D2TZW1 Type III secretion sytem SpaR,YscT,HrcT,EscT n=1... 60 5e-08 UniRef50_B8DMR4 Type III secretion protein SpaR/YscT/HrcT n=5 Ta... 60 6e-08 UniRef50_A0RCA1 Flagellar biosynthetic protein n=70 Tax=Bacillus... 60 6e-08 UniRef50_Q12T87 Type III secretion system inner membrane R prote... 60 7e-08 UniRef50_B1T8E1 Type III secretion system inner membrane R prote... 60 7e-08 UniRef50_B8EL38 Type III secretion system inner membrane R prote... 60 8e-08 UniRef50_B4U883 Type III secretion system inner membrane R prote... 60 8e-08 UniRef50_Q16DQ9 Flagellar biosynthetic protein FliR n=5 Tax=Rhod... 60 9e-08 UniRef50_A1UTW5 Flagellar biosynthetic protein fliR n=34 Tax=Rhi... 60 1e-07 UniRef50_Q058C0 Type III protein export, membrane component n=1 ... 60 1e-07 UniRef50_B5Y7F5 Bacterial export protein, family 1 n=1 Tax=Copro... 59 1e-07 UniRef50_Q2SH54 Type III secretory pathway, component EscT n=1 T... 59 1e-07 UniRef50_Q7NUT8 Type III secretion system EscT protein n=5 Tax=P... 59 1e-07 UniRef50_Q1GCD0 Flagellar biosynthetic protein fliR n=8 Tax=Rhod... 59 2e-07 UniRef50_P96068 Secretion system apparatus protein ssaT n=29 Tax... 58 3e-07 UniRef50_A4EG21 Flagellar biosynthetic protein FliR n=4 Tax=Rhod... 58 4e-07 UniRef50_D0G8P1 Conserved domain protein n=1 Tax=Clostridium bot... 57 4e-07 UniRef50_Q2T714 Type III secretion system protein BsaY n=30 Tax=... 57 6e-07 UniRef50_B6IS88 Flagellar biosynthetic protein fliR n=1 Tax=Rhod... 57 8e-07 UniRef50_B2IG71 Flagellar biosynthesis protein FliR n=1 Tax=Beij... 56 1e-06 UniRef50_Q9KKH0 YsaT n=8 Tax=Enterobacteriaceae RepID=Q9KKH0_YEREN 56 1e-06 UniRef50_B1T6S9 Type III secretion system inner membrane R prote... 56 1e-06 UniRef50_A3D417 Type III secretion protein SpaR/YscT/HrcT n=35 T... 56 2e-06 UniRef50_B6IQA3 Flagellar biosynthesis protein FliR n=1 Tax=Rhod... 55 2e-06 UniRef50_P0A1M6 Surface presentation of antigens protein spaR n=... 55 2e-06 UniRef50_Q256E2 Type III secretion flagellar biosynthesis inner ... 55 3e-06 UniRef50_C9NP55 Type III secretion protein SpaR n=1 Tax=Vibrio c... 55 3e-06 >UniRef50_P54702 Flagellar biosynthetic protein fliR n=162 Tax=Enterobacteriaceae RepID=FLIR_SALTY Length = 264 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/260 (88%), Positives = 246/260 (94%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVTSEQWL WL+LYFWPLLRVLALISTAPILSER++PKRVKLGL +MIT IAPSLPA Sbjct: 1 MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ND P+FS ALWLA+QQILIGIALGFTMQFAFAAVRTAGE IGLQMGLSFATFVDP SHL Sbjct: 61 NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 NMPVLARIMDMLA+LLFLTFNGHLWLISLLVDTFHTLPIG P+NSNAF+AL +AG LIF Sbjct: 121 NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LNGLMLALP+ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI LMAALMPLIAPFC Sbjct: 181 LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC 240 Query: 241 EHLFSEIFNLLADIISELPL 260 EHLFSEIFNLLADI+SE+P+ Sbjct: 241 EHLFSEIFNLLADIVSEMPI 260 >UniRef50_B2AIF6 Flagellar biosynthetic protein fliR n=24 Tax=Proteobacteria RepID=B2AIF6_CUPTR Length = 265 Score = 229 bits (584), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 113/262 (43%), Positives = 178/262 (67%), Gaps = 5/262 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M++ TS Q WL + WP R+LALI TAP+ E ++P+R K+ L+ +I ++P++ Sbjct: 1 MIEFTSAQLYGWLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSALIAMVVSPTIAQ 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V PV+SF L + + ++ IG+A GF M+ FA V+ AGEIIGLQMGLSFA+F D A+ Sbjct: 61 VPVVPVYSFGGLMIILNEVGIGLATGFVMRLVFATVQQAGEIIGLQMGLSFASFFDRAAG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE----PLNSNAFLALTKA 175 VL+R ++++A+LLFL +GHL ++ LVD+F++LPIGG PL++ +A+ +A Sbjct: 121 GQTMVLSRFLNLIAVLLFLALDGHLLMLGALVDSFNSLPIGGNPGGTPLSAGGAMAVARA 180 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 G ++F +GL+LALP+I LL LNLA+G+LNR +PQLSIF +GFP+TL+ G+ ++ +MP Sbjct: 181 GGMVFASGLLLALPMIAALLILNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQ 240 Query: 236 IAPFCEHLFSEIFNLLADIISE 257 + + +H+ + ++ + Sbjct: 241 MGSYMQHMIEAGLEAVGTVLGQ 262 >UniRef50_Q1QW39 Flagellar biosynthetic protein fliR n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QW39_CHRSD Length = 261 Score = 223 bits (568), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 119/259 (45%), Positives = 173/259 (66%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVT Q WL L+FWP +R+LA ++ +PI ++ VP++ + L ++ FAI P+LP Sbjct: 1 MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 D P+ S L + +Q++LIGIALG ++ A V+ AGE IGLQMGL+FATF P Sbjct: 61 MPDTPIVSIGGLGILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +M VL+RI M+ LL+FL NGHL + +L ++F TLP+GG ++ +A + + G I Sbjct: 121 NSM-VLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEI 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F +G+++ALPLI LL +NL LG+LNR +PQLSIF IGFP+TLT G+ L+ LMP + F Sbjct: 180 FTSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRF 239 Query: 240 CEHLFSEIFNLLADIISEL 258 E LFS F+ + +++ L Sbjct: 240 LEILFSNSFSTMQEVVQRL 258 >UniRef50_Q3SIG3 Flagellar biosynthetic protein fliR n=41 Tax=Betaproteobacteria RepID=Q3SIG3_THIDA Length = 262 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/259 (47%), Positives = 162/259 (62%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +T Q WL + WPL R+L L+ AP+ R+VP RVK+GL + I AP+LP Sbjct: 1 MISLTDAQLNVWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V + S+ L++ VQQ LIG+A+GF M+ FAAV AGEIIGLQMGL FA+F DP S Sbjct: 61 MPAVGLGSWHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 VLAR +MLA+LL L N HL L+ +LV++F LPI EPL + F + G+ I Sbjct: 121 GQTLVLARFFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALPLI +LL NL LG+L R APQL+IF IGFP+TL VG+ ++ +P AP Sbjct: 181 FSLGLQLALPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQ 240 Query: 240 CEHLFSEIFNLLADIISEL 258 E L + + ++ L Sbjct: 241 FEQLIASGLDAATSVVRTL 259 >UniRef50_A1WCC7 Flagellar biosynthetic protein fliR n=8 Tax=Burkholderiales RepID=A1WCC7_ACISJ Length = 256 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 5/239 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ T Q ++WL+ WP LRVLAL ++AP+ S R +P R ++GLA ++ LP Sbjct: 1 MITFTEAQIMAWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLP- 59 Query: 61 NDVPVFSFFALWLA---VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 + PV S + A VQQ+ IG+A+GF ++ FAAV AGEIIGLQMGL+FA+F DPA Sbjct: 60 -EQPVISLNSREAAGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPA 118 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 S+ + +AR +++LLF+ NGHL ++ +V +F + P+GG L + + L + G+ Sbjct: 119 SNAQVSAVARFFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGA 178 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 +F + L +ALP+I LLL +NL LG+++R+APQ++I+ +GFP+TLTVG+ + A +P++ Sbjct: 179 SLFSSALWIALPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPML 237 >UniRef50_C6P5I0 Flagellar biosynthetic protein fliR n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5I0_9PROT Length = 262 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/260 (41%), Positives = 166/260 (63%), Gaps = 3/260 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-- 58 M+ TS Q +WL + +PL R+LALI+++P+ + VP R+K+G A+ IT IAP+L Sbjct: 1 MISFTSAQLSAWLAAFIFPLARILALIASSPLYGIKEVPARIKVGFAIAITIIIAPTLDI 60 Query: 59 PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 PAN P S L++ VQQI+ G+ +GF+++ F AV AG++ G+QMGL FA+F DP + Sbjct: 61 PANLDPA-SAQGLFVLVQQIVAGVIIGFSIRLIFVAVEMAGDLTGMQMGLGFASFYDPVN 119 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 P++A+ + +LA L FL NGHL+L+ L D+F PIG +++AF + + G Sbjct: 120 ATFTPIVAQFLGILASLAFLAANGHLYLLVALADSFRDFPIGATVPSAHAFRTMAEWGGS 179 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F + L +LPLI LL N+ALG+L R APQL+IF +GFP+T+ VG + +P +AP Sbjct: 180 LFSHALQFSLPLIGALLITNIALGILARSAPQLNIFAVGFPITIAVGFVTLWLTLPYLAP 239 Query: 239 FCEHLFSEIFNLLADIISEL 258 ++ E N ++ I+ +L Sbjct: 240 VMDYFTHEGVNSISRIMLQL 259 >UniRef50_Q89AZ0 Flagellar biosynthetic protein fliR n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIR_BUCBP Length = 257 Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 157/247 (63%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q ++ ++ F+P +R+LAL STAP+ + + + K++KL +A +I++ + LP Sbjct: 1 MFQFNFNDFILFIYNLFFPAVRILALFSTAPLFNSKFIEKKIKLIMAFVISWIFSSFLPK 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ +FS + + ++Q+LIGI LG TMQ F+++ +GEII LQMGLSF++ D S Sbjct: 61 VNIAIFSVDGILIIIEQMLIGILLGLTMQLIFSSIFMSGEIISLQMGLSFSSLFDFNSRS 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 N+ L+ + + LLLFL +NGH+W++S L DTF T+PI L+ N FL + IF Sbjct: 121 NLSALSHFVHIFLLLLFLEWNGHIWMLSALFDTFITIPIQKIYLDPNIFLKVVNFSKYIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +ML P+I + L LNL++G+LNR+APQ+SI +GF +TL VGI L+ +P+ C Sbjct: 181 FDSIMLLFPIIIVQLLLNLSIGILNRVAPQISILSLGFTVTLLVGIILLYFFIPIFPSSC 240 Query: 241 EHLFSEI 247 +F + Sbjct: 241 IVIFRRL 247 >UniRef50_Q0AEE8 Flagellar biosynthetic protein fliR n=5 Tax=Betaproteobacteria RepID=Q0AEE8_NITEC Length = 266 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 115/262 (43%), Positives = 165/262 (62%), Gaps = 15/262 (5%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-- 58 M +T+EQ WL + WPL R+LAL++ P+L S+P +VKLGLA+++T IAP L Sbjct: 1 MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPP 60 Query: 59 -----PANDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFAT 112 P + V P+ + +QQI+IG+A+GF+++ F AV AGEI GLQMGL FAT Sbjct: 61 LPQIDPGSGVGPI-------VLLQQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFAT 113 Query: 113 FVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLAL 172 F DP + ++ R +LA LLFL +GHL +I++L +F LPIG + +N +F L Sbjct: 114 FFDPQQSGQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTL 173 Query: 173 TKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAAL 232 G+ IF GL LALP++ LL NLALG+L R APQL+IF +GFPLTL +G+ +M+ Sbjct: 174 VNWGAEIFTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWA 233 Query: 233 MPLIAPFCEHLFSEIFNLLADI 254 +P P +F E F+++ + Sbjct: 234 LPYFTPVLTQMFQESFSIMRSL 255 >UniRef50_A6SXX2 Flagellar biosynthetic protein fliR n=3 Tax=Oxalobacteraceae RepID=A6SXX2_JANMA Length = 263 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 159/259 (61%), Gaps = 8/259 (3%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +TS + +W+ + WPL R++ +IS AP+ SVP RVK+GL +++ IAP++PA Sbjct: 1 MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S L + QQ++IG+++GF M+ FA V AGEIIG+ MGL FA+F DP + Sbjct: 61 MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++ + +L L+++L N HL ++S L +F LPI L++ L + K G I Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G+ L+LP++ LL N+ALG+L R APQL+IF IGFP+T+ VG ++ ++P Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLP----- 235 Query: 240 CEHLFSEIFNLLADIISEL 258 +L + I NL+ + I + Sbjct: 236 --YLMNPIINLMQEGIDAM 252 >UniRef50_Q8KA35 Flagellar biosynthetic protein fliR n=4 Tax=Buchnera aphidicola RepID=FLIR_BUCAP Length = 258 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/232 (46%), Positives = 159/232 (68%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV 75 +FWPL+R+LA STAPI ++++V K+VK+ L+ +I F I P LP +V +FS L+L Sbjct: 16 FFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPKVNVELFSIIGLFLLF 75 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 QQILIGIALG T QF FAA +GEII LQ+GLSFA F + ++ +++R +++L LL Sbjct: 76 QQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISRWLNILNLL 135 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 FLT N HL+L+ +L+D+F+ +P+ L++N F K S IFLNG+M ALP++ L Sbjct: 136 FFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIFLNGVMFALPIMIFFL 195 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 L + +LNR++PQ+SIF IGFPL L +GI ++ LM + PF + L +++ Sbjct: 196 ISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFFKSLVNQL 247 >UniRef50_B9NJ47 Predicted protein n=6 Tax=cellular organisms RepID=B9NJ47_POPTR Length = 314 Score = 179 bits (455), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 154/235 (65%), Gaps = 5/235 (2%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 + Q ++WL+ WP LRVLA+ S AP+ S+R +P R+K+GLA ++ P L D P Sbjct: 63 SEAQLVAWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVL--GDQP 120 Query: 65 VF---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V S AL +QQ+ +G+A+GF ++ FAAV AGE++GLQMGL+FA+F DP ++ Sbjct: 121 VIGINSPQALGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNAQ 180 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 + +AR M ++ LLF+ NGHL ++ ++ ++ P+ G L + + L + G+ +F Sbjct: 181 LSAVARFMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVFA 240 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 + +ALP++ +LL +NL LG+++R+APQ++I+ + FP+TLTV ++ + A +PL+ Sbjct: 241 SAFWIALPMVAMLLFVNLVLGIISRVAPQMNIYAVXFPVTLTVXLTGLMATLPLL 295 >UniRef50_A1K939 Flagellar biosynthetic protein fliR n=2 Tax=Rhodocyclaceae RepID=A1K939_AZOSB Length = 270 Score = 179 bits (454), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 109/256 (42%), Positives = 165/256 (64%), Gaps = 5/256 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ VTS Q +WL +PL R+L L +TAP+ S R++P R++L +A+ I A+ P+LPA Sbjct: 1 MISVTSAQLDAWLAALMFPLARLLGLFATAPVFSNRAIPVRIRLTMALGIALALLPALPA 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 P L + VQQ+ IGIA+GF ++ FAA+ AG +IG+QMGLSFA F DP + Sbjct: 61 MPQTPPGGGIGLLVMVQQMFIGIAIGFMIRIVFAAIDMAGSLIGMQMGLSFAVFFDPDAG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 VL+ + ++A LLFL+ NGHL L++ L+ +F LPIG ++++ + + +AG+ + Sbjct: 121 GQTAVLSDFLSLVATLLFLSINGHLMLVAALIRSFEWLPIGLNVVSASGWAYIARAGAAV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG----ISLMAALMPL 235 F GL+L+LP++ +LL N+ALG+L R APQL++F IGFP+TL +G I +M P+ Sbjct: 181 FATGLLLSLPIVAVLLVANIALGILTRAAPQLNLFAIGFPVTLAMGFMGLILIMTNFGPV 240 Query: 236 IAPFCEHLFSEIFNLL 251 + EH F I +L Sbjct: 241 VVSLFEHGFDTISAML 256 >UniRef50_Q47I14 Flagellar biosynthetic protein fliR n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I14_DECAR Length = 260 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + S Q +W+ + +PL R+L I+ AP+ S +P+R +L LA+ I AI P+LP Sbjct: 1 MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S LW+ QQ+LIGI +GF + F A AGE I QMGL FATF DP + Sbjct: 61 MPGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNS 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 PV+ + ++ALLLFL+ NGHL ++ L +F +P+ PL ++++L L + GS I Sbjct: 121 SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+L+LP+I L+ N+AL +L R APQL++F +GFPLTL G +A + +A Sbjct: 181 FSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP 240 Query: 240 CEHLFS 245 + +F Sbjct: 241 LQGIFE 246 >UniRef50_C6NWP1 Flagellar biosynthetic protein fliR n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NWP1_9GAMM Length = 262 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 165/256 (64%), Gaps = 10/256 (3%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +TS Q W+ +FWP +R+LAL+STAP+ S +VP +V++GLA +I+ AIAP+LP Sbjct: 1 MISLTSGQLEHWIGAFFWPFVRILALLSTAPVFSASAVPIQVRVGLAAIISVAIAPALP- 59 Query: 61 NDVPVFSFFA---LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 +P F + L L V+QI+IG ALGF + F+AV+ AG +I LQMGL F++F DP Sbjct: 60 -TLPAVHFLSGAGLVLLVEQIVIGTALGFAVTLIFSAVQFAGSVISLQMGLGFSSFFDPT 118 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP---LNSNAFLALTK 174 + + +P L+ +++ LL F+ NG L ++ +L+ +F LP+ +P +++ A+ L Sbjct: 119 TGVQVPTLSNFLNLAVLLFFMALNGQLLVLVVLMRSFTVLPV--DPNLVVHATAWHVLAA 176 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 AG+ +F G+ +A P++ L +N+ALG+L+++APQL++FV+GFPL + VG+ + L P Sbjct: 177 AGAAVFSLGMAIAAPVLGALFLVNIALGVLSKLAPQLNLFVVGFPLLIGVGLIGLYLLAP 236 Query: 235 LIAPFCEHLFSEIFNL 250 + L NL Sbjct: 237 ALELVVRQLLDLALNL 252 >UniRef50_B2UJU2 Flagellar biosynthetic protein fliR n=6 Tax=Ralstonia RepID=B2UJU2_RALPJ Length = 262 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 148/243 (60%), Gaps = 1/243 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+Q T+ Q W+ +Y+WPL+RVLA I+ AP + VP +K+ L ++IT A+AP LP Sbjct: 1 MIQFTAAQLNGWIAMYWWPLVRVLAFIAMAPPFANTEVPTSIKIALGVIITVALAPMLPV 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V V S+ LW+ + Q +IG++LGF +Q F+A+ AGE++ +QMGL FA+ +DP Sbjct: 61 PVGVSVGSYEGLWITLLQAVIGLSLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPQQT 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +L R + + A+ F+ +GHL L+ L D+F LP+ PL + + L G+++ Sbjct: 121 ESSMLLGRFISLTAITAFIAGDGHLVLLHALFDSFTALPVSAAPLANPGWQTLAGGGTMV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + +ALP+I ++L +NL +L+R A L+ F +G TL VG+ L+ +M +AP Sbjct: 181 FALAVRIALPIIAIMLVVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPV 240 Query: 240 CEH 242 E Sbjct: 241 VER 243 >UniRef50_A6GTX6 Flagellar biosynthetic protein fliR n=1 Tax=Limnobacter sp. MED105 RepID=A6GTX6_9BURK Length = 254 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 150/228 (65%), Gaps = 6/228 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + EQ W+ + WP +R+LA+++TAP+ R+V +R ++GLA +I + P LPA Sbjct: 1 MVPINGEQLEIWIASFLWPFIRILAILATAPVFDNRTVQRRTRVGLAALIAILMMPLLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S A+ + +QQILIG+A+GF+M+ FAA AG+++GLQMGL+FA F+DPA Sbjct: 61 PPV-LSSAQAIPVLIQQILIGVAMGFSMRLVFAAFEMAGDLLGLQMGLAFAQFIDPARGT 119 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSL 178 P++ + +LA+L FL +GHL +I+ +V +F +PI +NS ++ AGS+ Sbjct: 120 QTPLIGSFLGVLAMLTFLVIDGHLLVIAAVVQSFELIPISANLAVVNSQ---SIAMAGSI 176 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 +F+ L ++LP++ +L N+ LG+L R APQL++ IGF +T+ VG+ Sbjct: 177 MFMLALQISLPVMAAVLISNIVLGILARAAPQLNVMSIGFSITIGVGL 224 >UniRef50_A1U244 Flagellar biosynthetic protein fliR n=8 Tax=Gammaproteobacteria RepID=A1U244_MARAV Length = 261 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 146/242 (60%), Gaps = 1/242 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSFF 69 W+ + WPL R+ + + PI + VP RV+LGLA+++T IAP +P V S Sbjct: 13 QWVGQHIWPLFRLASFLMVIPIFGTQLVPARVRLGLALLMTILIAPMIPPVPQVEALSAD 72 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 A+ + +QQILIGI LGF + + AG++I +QMGL FA+ VDPA+ +N+PVLA+I Sbjct: 73 AVVITLQQILIGIGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVPVLAQIY 132 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 + LLFL NGHL + +++F+TLPIG E L + AL S +F + ++LALP Sbjct: 133 TITITLLFLVMNGHLVAFEVFIESFYTLPIGLEGLGQDGVWALAHRISWMFASAMLLALP 192 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +T +L +N++ G++ R APQ++IF +GFP+ L G+ + L P + E F+ Sbjct: 193 AVTAVLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFDQYTRETFD 252 Query: 250 LL 251 + Sbjct: 253 FM 254 >UniRef50_C7I0T6 Flagellar biosynthetic protein fliR n=1 Tax=Thiomonas intermedia K12 RepID=C7I0T6_THIIN Length = 266 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 102/260 (39%), Positives = 157/260 (60%), Gaps = 3/260 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ TS Q +W+ +FWP LRVLA++S AP+ S S+P V++GLA++I AIAP+LPA Sbjct: 1 MIHFTSTQIETWIGAFFWPFLRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPA 60 Query: 61 NDVPVFSFFALWLAVQQIL-IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 F W+ + Q L +G A+G +M +AV AG +IGLQMG+ FAT DP Sbjct: 61 MPPVQFGTATAWMLLLQQLLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALT-KAGS 177 + + LA ++M+ +LLFL NGHL L++++ +F LP+ L + + L + GS Sbjct: 121 VQVTSLASFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGS 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 IF GL LA P+I +LL NL LG+L ++APQL++F +GFP+ +G + +MP++ Sbjct: 181 AIFSLGLALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQ 240 Query: 238 PFCEHLFSEIFNLLADIISE 257 +HL +L ++ + Sbjct: 241 NVVQHLVDVGLSLSGQVLQQ 260 >UniRef50_Q8D3F3 Flagellar biosynthetic protein fliR n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3F3_WIGBR Length = 258 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 147/226 (65%), Gaps = 1/226 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + L W+N W + RV L +AP+ +E+ +P+++K+ ++++ +F ++ LP Sbjct: 3 MIDFSINILLDWINQNIWAIARVNGLFISAPVFNEKVIPRKIKILISVLFSFLVSQELPL 62 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 N++ + S ++ + QI+IG +G +Q +F +++ +GE+IGLQMGLSFA F D S Sbjct: 63 NNISIISIEGFYVLIIQIIIGFFIGLILQLSFCSIKFSGELIGLQMGLSFAVFFDHISGP 122 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLI 179 N P+++R +++ +L+FL+F+ HL ++ +L ++F +PIG N F ++ +I Sbjct: 123 NSPIISRFFNLILILIFLSFDAHLTVLDILFNSFKLIPIGINFKFNDEIFFSIINFSGII 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 F NGL L++P IT+LL+LN+ G+LNR PQ SIFVIGF LTL +G Sbjct: 183 FANGLFLSIPSITMLLSLNILFGILNRFTPQFSIFVIGFSLTLLIG 228 >UniRef50_Q31HN5 Flagellar biosynthetic protein fliR n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HN5_THICR Length = 247 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 150/244 (61%), Gaps = 3/244 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV--FSFFA 70 + LYFWP +R+ ++ PILS VP V+L LA+ ITFA+APSL A PV F++ Sbjct: 1 MGLYFWPFIRISGMLLMVPILSGSYVPMNVRLLLAVFITFAVAPSL-ALPPPVDPFTWHG 59 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + L VQQ+ IG+A+G F A AG + + MGL+ A+ VDPA+ +N P++ R Sbjct: 60 ILLIVQQLGIGVAIGLIFALIFQAFVIAGHLASMSMGLAMASMVDPATGVNTPIIGRYFT 119 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 ++A LLFL NGH+ + ++ +F TLPIG ++ + GS +F +G+ +ALPL Sbjct: 120 IIATLLFLLMNGHVLVFKAVLQSFETLPIGLHFFTQDSLKLIYGFGSQMFESGVTIALPL 179 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 +T LL +N+A G++ R AP L+IF +GFP+TL VG+ ++ + PL+ P + L L Sbjct: 180 VTALLLVNIAFGVVARAAPALNIFAVGFPVTLLVGLIMLVFITPLLYPNLQILMKATVEL 239 Query: 251 LADI 254 LA + Sbjct: 240 LAQL 243 >UniRef50_B8GQZ8 Flagellar biosynthetic protein fliR n=2 Tax=Thioalkalivibrio RepID=B8GQZ8_THISH Length = 257 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 138/222 (62%), Gaps = 1/222 (0%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDV 63 T+ + +W+ WP LR+ A++ AP+ +V RV+L +A ++ +AP +P V Sbjct: 4 TTAEITAWIGSLLWPFLRISAMLLAAPLYGAGTVTVRVRLAIAFILALVVAPLIPLPPAV 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 S L ++VQQILIG+ +GF +Q FAA+ AGE I L MGL FA+ VDP S + +P Sbjct: 64 EPLSLAGLVVSVQQILIGLTIGFVLQMVFAALTQAGEAIALSMGLGFASMVDPQSGVQVP 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 V++ +++ LLFL NGH+ LI L + +F LP+G E + AL GS +FL Sbjct: 124 VVSSYFVIMSTLLFLALNGHVALIELTLLSFQALPVGVEGVTREGLWALVSWGSTMFLYA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 L++ALP + +L +NL++G++ R APQL+IF +GFP+ + +G Sbjct: 184 LLVALPAVASMLLVNLSMGVITRAAPQLNIFAVGFPMMIMLG 225 >UniRef50_C5S861 Flagellar biosynthetic protein fliR n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S861_CHRVI Length = 260 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 140/227 (61%), Gaps = 5/227 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 L + + L W WP +R+ A++ P+ R + RV+LGLA+++ + IAP LP Sbjct: 4 LTLEATDILRWTVSLVWPFVRISAMLLVMPVFGARQINARVRLGLALLLAWMIAPQLP-- 61 Query: 62 DVPV---FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 +VP S + +A++Q LIGIA+GF + F+A+ AGE I L MGL FA+ VDP Sbjct: 62 EVPAIDPLSVGGVVVAIEQALIGIAMGFVVTLVFSAINQAGEAIALSMGLGFASAVDPVG 121 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 + +P++++ + ++A L+FL NGHL L LL+ +F T PIG + ++ + GS Sbjct: 122 GVQVPMISQYLSIIATLIFLAMNGHLVLFELLLRSFETFPIGLDGPDNEDLWYIANFGSQ 181 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 +F +++ALP + LL +NLA+G++ R APQL+IF IGFP+T+ G Sbjct: 182 MFAGAVLIALPAVASLLLVNLAMGVVTRAAPQLNIFAIGFPITILAG 228 >UniRef50_D0KYN9 Flagellar biosynthetic protein fliR n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN9_HALNC Length = 258 Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 147/249 (59%), Gaps = 1/249 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSF 68 + W+ Y W L+RV AL+ PI R VPKR ++ A++ + IAP+LP + S Sbjct: 9 MGWVGSYVWVLVRVAALLMVVPIFGARGVPKRWRILAALVFSLIIAPTLPPVPTIDPLSV 68 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + L QQI+IG+ +GF + ++ AGE + L MGL FA VDP + +++P++++ Sbjct: 69 AGILLVAQQIIIGVTMGFVLGLIVSSFVVAGESMALGMGLGFAQTVDPQNGVSVPIVSQF 128 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + ++A LLF++ +G ++ +L D+F LPI L+ F + G +F+N +++AL Sbjct: 129 LTVVATLLFISLDGPALIVKMLADSFVWLPIAPVGLSPETFWRVVGFGQSMFINAILIAL 188 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+I LL +NLA+G++ R APQL+IF IGFP TL +G L+ P P EH + Sbjct: 189 PVIISLLMVNLAMGVITRAAPQLNIFSIGFPATLLIGFFLILVSSPTWVPILEHFLQQTL 248 Query: 249 NLLADIISE 257 ++D++ + Sbjct: 249 QFISDLLRQ 257 >UniRef50_Q4ZQU8 Flagellar biosynthetic protein fliR n=20 Tax=Pseudomonas RepID=Q4ZQU8_PSEU2 Length = 261 Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 140/227 (61%), Gaps = 2/227 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +T Q +W+ + PL R++AL+ T PI+ VP+RV++ LA+ IT +AP+LPA Sbjct: 4 MLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPA 63 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V AL L +QI+IG +G ++Q F AG+II QMG+ FA+ VDP + Sbjct: 64 MPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNG 123 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++ + + ML LLFL NGHL ++ +LV++F T+P+G L +N F L + Sbjct: 124 VSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWV 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 +GL L LP IT LL +N+A G++ R APQL+IF IGFPLTL +G+ Sbjct: 183 LASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGM 229 >UniRef50_B3PF02 Flagellar biosynthetic protein fliR n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PF02_CELJU Length = 261 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 163/257 (63%), Gaps = 2/257 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 ++ +Q + ++ Y WP+LR+ A P++ R+VP R++L L ++ F + P LP V Sbjct: 6 ISEDQLMQFIGQYIWPMLRIGAFYFAVPVIGARTVPARIRLILMLLTVFLLVPVLPPAPV 65 Query: 64 -PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + S L L Q++LIG+ALGFTMQ AG+ I ++MGL FA DP+S +++ Sbjct: 66 VSLLSLAGLMLIAQEVLIGLALGFTMQVVLHVFVLAGQYIAMKMGLGFAAMNDPSSGVSV 125 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 VL++ +L+ LLFL+ NGHL ++ L++D+F PIGG+ ++++A++ + + GS +F Sbjct: 126 TVLSQFYLLLSTLLFLSTNGHLVVLQLMIDSFRFFPIGGDGISTSAYMVIVQMGSWMFSA 185 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 L++ALPL T L+ +N++ G+++R APQ+++F +GFP+TL G++LM + P Sbjct: 186 ALLIALPLFTSLMIVNMSFGVMSRAAPQMNVFTVGFPITLVFGLALMYFSLGNFLPLYME 245 Query: 243 LFSEIFNLLADIISELP 259 L E +L +++ E+P Sbjct: 246 LMEEGIGILRNLV-EVP 261 >UniRef50_A1WUA7 Flagellar biosynthetic protein fliR n=3 Tax=Ectothiorhodospiraceae RepID=A1WUA7_HALHL Length = 263 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 158/259 (61%), Gaps = 6/259 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++++S + +W+ + +PL+R+ A AP+ VP +V++ + + +T A+ P++ Sbjct: 1 MEISSAEAAAWVGTFMYPLMRIGAAALVAPVFGNDMVPLQVRVFIGVALTIAVLPAV--G 58 Query: 62 DVPV---FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 +VP S L +AVQ+IL+G+ +G + A AGE I L MGL FAT VDP + Sbjct: 59 EVPPVDPLSPDGLLIAVQEILVGLTIGMVLALALNTAVIAGESIALAMGLGFATMVDPQT 118 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 +++PV+++++ + LLFL GHL LI LL D+F +PIG L+ + F + G+ Sbjct: 119 GMSVPVISQLLLTIVTLLFLAVGGHLMLIQLLADSFSAVPIGEIVLDRDVFWGVAAWGTQ 178 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAAL-MPLIA 237 ++ +++ALPL+T+LL +NL+LG++ R APQ+++F +G PLT+ VG LM L +P + Sbjct: 179 MYAGAVLIALPLVTVLLVINLSLGVMTRAAPQMNVFSVGLPLTILVGGVLMPILVLPALP 238 Query: 238 PFCEHLFSEIFNLLADIIS 256 ++SE +N + ++ Sbjct: 239 ARMAMMWSEAYNTIGQLLG 257 >UniRef50_Q1GZV4 Flagellar biosynthetic protein fliR n=3 Tax=Methylophilaceae RepID=Q1GZV4_METFK Length = 266 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 152/249 (61%), Gaps = 5/249 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ V E W+ WPL R+LA I+ AP+ + R++P VKLGL +++T A+ PS+P Sbjct: 1 MVTVPEEFLQVWVATLMWPLTRILAFIAVAPLFNHRALPNNVKLGLGLVLTVAVMPSIP- 59 Query: 61 NDVP---VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 D+P VFS L + QQ++IG A+GF+++ F+AV AG G+ MGL FA F DP Sbjct: 60 -DIPPVSVFSMNGLLILCQQVIIGAAMGFSLRIIFSAVELAGHTAGMTMGLGFAMFYDPQ 118 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + + + + +L++LLFL+ +GHL +IS L ++F + P+ EP + G Sbjct: 119 TQGQSTSIGQFLVVLSMLLFLSIDGHLVVISTLAESFSSFPVTAEPNFGLDPYKIALWGG 178 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 IF GL+++LP+I LL NLALG+L R APQL++F IGFP+T+++G L+ +P + Sbjct: 179 KIFSAGLLMSLPIIAALLLANLALGVLTRAAPQLNLFGIGFPITISLGFLLLMLALPYMM 238 Query: 238 PFCEHLFSE 246 + L E Sbjct: 239 QPVQRLMHE 247 >UniRef50_A4BIP6 Flagellar biosynthetic protein fliR n=1 Tax=Reinekea blandensis MED297 RepID=A4BIP6_9GAMM Length = 263 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 149/249 (59%), Gaps = 15/249 (6%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 ++++T SW++ + WP R+ A P+L R +P RV+LGLA +IT+ I P LP Sbjct: 6 VIELTDAMIASWVSHFMWPFFRLGAFFVIVPVLGARLIPVRVRLGLAFVITYTIYPLLPD 65 Query: 60 -----ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFV 114 A DV F + ++QILIG LGF + AG+ I +QMGL FA+ V Sbjct: 66 MPIIEAVDVQTFM-----IILEQILIGTTLGFLVFVILQIFILAGQTISMQMGLGFASMV 120 Query: 115 DPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTK 174 DPA+ +++ VL++ +L L++L NGHL + ++VD+F+TLP+G ++ L++ Sbjct: 121 DPANGVSVAVLSQWYQVLVTLVYLAINGHLLTLEVVVDSFYTLPVGQGLFTVESWRLLSE 180 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM----A 230 G+ +F LMLALP +T LL +NL G++ R APQL++F +GFP+T+ G+ ++ A Sbjct: 181 FGAWLFRASLMLALPAVTALLLVNLTFGVMTRAAPQLNVFALGFPITMLGGLVIVWVSYA 240 Query: 231 ALMPLIAPF 239 A PL+ + Sbjct: 241 AAAPLVRQY 249 >UniRef50_B9Z788 Flagellar biosynthetic protein fliR n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z788_9NEIS Length = 258 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 2/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M ++ Q + ++L+ WP R++ ++ P+ S RS P R K G A+++T + P LP Sbjct: 1 MFPISDLQINALVSLFVWPFARIMGVLLADPLFSSRSAPARFKAGFALLLTLLLVPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 +PV S + + VQQ+LIG+ALG M+ AV AG ++G QMGL FA+F DP + Sbjct: 61 QPAIPVVSAEGVAVLVQQLLIGLALGLVMRVVITAVEMAGFVMGTQMGLGFASFYDPINA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P +ARI+ + LLFL GH +I +L+++F TLPI G L + AL + G I Sbjct: 121 AQVPTIARILTLFTFLLFLLMGGHQVVIEILLESFRTLPI-GMTLPPDRLKALAEWGGHI 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALP++ LL NLA+G++ R +PQ +IF GFPLTL VG + + +PL+ P Sbjct: 180 FNWGLWLALPVVAALLVTNLAIGVMTRASPQFNIFTFGFPLTLLVGFAALYLSVPLMVPA 239 Query: 240 CEHLFSEIFNLLADIISE 257 E ++ E F + ++ Sbjct: 240 IESIYREAFAFMQGMLKS 257 >UniRef50_C1DAZ1 Flagellar biosynthetic protein fliR n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DAZ1_LARHH Length = 264 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 144/254 (56%), Gaps = 1/254 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAM-MITFAIAPSLP 59 ML +T + L+ Y WPL RV+ + P+ ++VP+RVK+ LA+ + + P Sbjct: 1 MLALTDAEIRLLLSTYLWPLFRVMGFLLADPLFGTKAVPRRVKVVLAIALTLLLVPLLPP 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 VPV S +++ VQQ+LIG+A+GF M+ AV AG +IG+QMGL FA DP Sbjct: 61 MPAVPVVSGEGVFIIVQQLLIGVAMGFAMRLVITAVELAGAMIGMQMGLGFAMQFDPMMG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P L+R++ + L+ L+FNGHL ++ + ++F PI +PL + + G + Sbjct: 121 AQVPSLSRLLTLSTYLVLLSFNGHLIMLGTVAESFTLFPISLDPLPAAGLQLVAAWGGKM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L L+LP++ LL NLA+G++ R APQ +IF GFPLTL +G ++ +P + Sbjct: 181 LALALWLSLPVVVALLITNLAIGVMTRAAPQFNIFSFGFPLTLLIGFVVLYYALPFMGQA 240 Query: 240 CEHLFSEIFNLLAD 253 + L+ + F L+ Sbjct: 241 LQQLYLQGFELMRQ 254 >UniRef50_Q12PK2 Flagellar biosynthetic protein fliR n=8 Tax=Gammaproteobacteria RepID=Q12PK2_SHEDO Length = 267 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 2/228 (0%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-NDVPVFSFFALWLA 74 Y WPL R+ +++ + + P RV+L LA+ TFAIAP LP +V +F+F A+++ Sbjct: 15 YLWPLFRISSMLMIMAVFGANTTPSRVRLMLAVAFTFAIAPVLPEIKNVELFAFSAVFIT 74 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 +QQILIG +GF G+IIG+Q L FA+ VDP S PV+ +LA Sbjct: 75 LQQILIGAVMGFVTLMLMQTFVLTGQIIGMQTSLGFASMVDPGSGEQTPVVGNFFLLLAT 134 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 L+FL+ +GHL + ++V +F ++P+ + + + L + G +F L +++ I L Sbjct: 135 LIFLSIDGHLLMFRMIVASFESIPVSNQGIEIANYKILAEWGGYMFGAALTMSMSAIVAL 194 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM-AALMPLIAPFCE 241 L +NL+ G++ R APQL+IF IGFP+T+ G+ ++ L P++A F E Sbjct: 195 LLINLSFGVMTRAAPQLNIFSIGFPVTMVSGLLILWLTLGPIMAHFDE 242 >UniRef50_Q21IP9 Flagellar biosynthetic protein fliR n=2 Tax=Alteromonadales RepID=Q21IP9_SACD2 Length = 261 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 137/225 (60%), Gaps = 6/225 (2%) Query: 6 SEQWLSWL-NLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 +EQ L L YF P R+ A+ PIL + V RV+LGLA ++T + P L +P Sbjct: 7 TEQDLGLLLQQYFLPFCRIGAMFLAMPILGSQLVSPRVRLGLAFIVTLMVVPML--GSIP 64 Query: 65 VFSFFALWLAV---QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 S ++ + Q+IL+G+A G+ Q AF AG++I ++MGL FA+ DP + + Sbjct: 65 KVSGLSVQTFIYISQEILLGLAAGYCFQVAFQVFVLAGQLIAMKMGLGFASMNDPVNGVQ 124 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +++ ML L+F++ NGHL +I++LV++F T P GG ++N + G+ +F Sbjct: 125 TTAISQFYLMLVTLMFVSVNGHLVMINMLVESFVTFPPGGFIFSTNTMWKIANVGTWLFA 184 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 GL++ALP++T LL +N+A G+++R APQL+IF IGFP TL G+ Sbjct: 185 AGLLMALPVLTALLFINIAFGIMSRAAPQLNIFAIGFPFTLLCGL 229 >UniRef50_Q2BJ96 Flagellar biosynthetic protein fliR n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ96_9GAMM Length = 256 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 141/229 (61%), Gaps = 5/229 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML+++ Q W+ + WPL R+ + P+L + V R++L LA+ +T IAP LP Sbjct: 1 MLELSILQIEQWVAAFLWPLFRIGSFFMAVPLLGSQLVNARIRLMLALAVTAVIAPMLP- 59 Query: 61 NDVPVF---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 ++P F S + + QQ+++G LGF Q + G++I +QMGL FA+ DPA Sbjct: 60 -EMPAFNGLSVESYLIIAQQVIVGAMLGFLFQVFYQVFVLGGQMIAMQMGLGFASMTDPA 118 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + +++ +L + L +++F+ NGHL +I ++V +F LP+ + ++ ++F+ + +G+ Sbjct: 119 NGISVVMLGQFYLTLIMMIFVALNGHLIMIEIVVRSFEVLPVSLQAIDRDSFMKVALSGT 178 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 +F +++ALP +T LL +N+A G+++R APQL+I +GFP T+ +G+ Sbjct: 179 WMFSAAMLMALPAVTALLVVNMAFGIMSRAAPQLNILAVGFPFTMVLGL 227 >UniRef50_A5F6D9 Flagellar biosynthetic protein fliR n=62 Tax=Vibrionales RepID=A5F6D9_VIBC3 Length = 260 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 128/213 (60%), Gaps = 2/213 (0%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFALWL 73 YFWP R+ A++ + R VP RV+L L + +TFA+ P++PA +D+ + S + Sbjct: 15 YFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMI 74 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 +QI+IG+A+G QF G+I+G+Q L FA+ VDPA+ N P+L ++ +LA Sbjct: 75 TFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLA 134 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 L FL +GHL +I L+V +F +LPIG L + F L ++F L ++L I Sbjct: 135 TLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLSGIIA 194 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 LLT+NL+ G++ R APQL+IF +GF L VG+ Sbjct: 195 LLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGL 227 >UniRef50_Q1N2V1 Flagellar biosynthetic protein fliR n=1 Tax=Bermanella marisrubri RepID=Q1N2V1_9GAMM Length = 262 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 1/227 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 +L + S + SW++ Y WP R P+ R V RV+L LA + + P LP Sbjct: 8 LLDINSAEVSSWVSRYLWPFFRFAGFFMVLPLFGTRLVTARVRLFLAFFTSILVTPLLPP 67 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S + + QQILIGIALGF ++ G++I +Q GL A VDP + Sbjct: 68 MPVIDAVSVQTMVIIAQQILIGIALGFVVEILMQIFILCGQLIAMQTGLGMAMMVDPTNG 127 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +N+ V+A+ + A LLF+T NGHL I +L D+F T+P+G +++N ++ + + Sbjct: 128 VNVAVVAQWFLIFANLLFITLNGHLVAIEILADSFFTIPVGEGTISTNVMWSIVELAHWM 187 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 F ++LALP IT +L +N+A G++ R+APQL+IF +GFP+T+ +G+ Sbjct: 188 FSAAIVLALPAITSMLVVNIAFGVMARLAPQLNIFAVGFPVTMLLGL 234 >UniRef50_C7RLB3 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RLB3_9PROT Length = 261 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 5/230 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 M+ +T+ + +W+ +F+PL RVLAL++ AP + ++P RV+L L + IT IAP LP Sbjct: 1 MISLTTAEINAWVVAFFFPLARVLALLAAAPPFNNPALPARVRLALGLAITIGIAPVLPL 60 Query: 60 --ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 A D P L LA Q+++IG A+GF M+ F+AV AG I+ L+MGL FA+ DP Sbjct: 61 MPALD-PASGAGMLILA-QELIIGTAMGFAMRLVFSAVDMAGNIVSLEMGLGFASAYDPQ 118 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + V++ M +LALL+F+ NGHL +I+ L +F +PIGG L + + +L + + Sbjct: 119 TAGQTAVVSEFMGLLALLVFMAINGHLMVIATLTHSFSVIPIGGPRLGATTWSSLANSAA 178 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIS 227 ++F GL L LP+I L+ NLAL +L+R APQL++ IGFPLT+ +G + Sbjct: 179 IVFSAGLFLVLPIIVALMISNLALAILSRAAPQLNLMAIGFPLTIALGFA 228 >UniRef50_B8CKZ1 Flagellar biosynthetic protein fliR n=22 Tax=Gammaproteobacteria RepID=B8CKZ1_SHEPW Length = 266 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 145/243 (59%), Gaps = 3/243 (1%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFSFFALWLA 74 Y WPL R+ ++ + + P RV+L L++ +T A+ P LP D+ +FS A+++ Sbjct: 15 YMWPLTRISSMFMVMAVFGANTTPSRVRLLLSLTVTAAVVPVLPPMPDIELFSLSAVFVT 74 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 QQI+IG+++GF+ G+IIG+Q L FA+ +DP S PV+A +L Sbjct: 75 FQQIIIGVSMGFSTLLLMQTFVLTGQIIGMQTSLGFASMIDPGSGQQTPVVANFFLLLTT 134 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 ++FL +GHL LI ++V +F ++P+ E L+ ++ T+ +F L ++L I L Sbjct: 135 MIFLAVDGHLILIKMVVASFDSIPVSMEGLSLASYRMFTEFVGYMFGAALTMSLSAIVAL 194 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM-AALMPLIAPFCEHLFSEIFNLLAD 253 LT+NL+ G++ R +PQL+IF IGFP+T+ G+ ++ L P++A F + ++ E+ LL + Sbjct: 195 LTINLSFGVMTRASPQLNIFAIGFPVTMVSGLFILWLTLTPIMAHF-DEVWREVQILLCN 253 Query: 254 IIS 256 ++ Sbjct: 254 VLE 256 >UniRef50_Q7NTD4 Flagellar biosynthetic protein fliR n=1 Tax=Chromobacterium violaceum RepID=Q7NTD4_CHRVO Length = 252 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 147/251 (58%), Gaps = 6/251 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML ++ Q +W++++ WP R++ L P+ + R VP+R K A+++T +AP LP Sbjct: 1 MLAISDIQINAWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTVILAPLLPP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + VQQ+LIG+++GF M+ +AV G IIG Q GL FA F DP Sbjct: 61 LPAE-----GIAILVQQLLIGLSMGFVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAA 115 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PVL++++ + LFL F+GH ++ L +F LPI G P+ + ALT G+ +F Sbjct: 116 QVPVLSQMLSLFTFFLFLAFDGHHVVLGALAHSFQVLPI-GMPMPAQGIKALTLWGAHLF 174 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 G+ LA+P+I LL NLA+G++ R APQ +IF GFPLT+ +G + +P++ P Sbjct: 175 EWGVWLAMPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVI 234 Query: 241 EHLFSEIFNLL 251 E ++ F+++ Sbjct: 235 ERMYQAGFDMM 245 >UniRef50_Q485K9 Flagellar biosynthetic protein fliR n=8 Tax=Alteromonadales RepID=Q485K9_COLP3 Length = 260 Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 126/212 (59%), Gaps = 1/212 (0%) Query: 19 PLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSFFALWLAVQQ 77 P R+ ALI T S +++P RVK+ L + IT A+ P++P A+ + S L QQ Sbjct: 18 PFSRISALIMTMIGFSSKTIPGRVKVFLCISITIAVMPAIPPASVTNLMSLNTAILLGQQ 77 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 ++IG+ LGF AG+II +Q GL FA+ VDPAS +N+P + + +L+ LLF Sbjct: 78 MIIGVMLGFVTIMVVNTFTLAGQIIAMQSGLGFASLVDPASGMNVPAIGQFFLILSSLLF 137 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 +GHL + +V +F TLPI E L+S + + + G +F L LAL IT +L + Sbjct: 138 WVMDGHLAYLQFIVASFDTLPIPTEHLSSIKYREVVEWGGWMFATALSLALAPITAMLLI 197 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 N + G++ R APQL+IF IGFP+T+ G+ +M Sbjct: 198 NFSFGIMTRAAPQLNIFAIGFPITMMAGLLIM 229 >UniRef50_Q3J976 Flagellar biosynthetic protein fliR n=3 Tax=Gammaproteobacteria RepID=Q3J976_NITOC Length = 236 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 118/195 (60%) Query: 31 PILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQF 90 P+ + VP R++L LA+ +T IAP +PA V S L +QQ LIG A+ +Q Sbjct: 4 PLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGGLLVMQQFLIGFAMALVLQM 63 Query: 91 AFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLL 150 F A G+I+ QMGL FA+ +DP + + + +++++ +L L+FL NGHL +I +L Sbjct: 64 VFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVFLGLNGHLVVIQVL 123 Query: 151 VDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQ 210 ++F+ LP+G E + F L AGS + +++ALP I L +NL G+++R APQ Sbjct: 124 AESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIALPAIGALSLVNLTFGVMSRAAPQ 183 Query: 211 LSIFVIGFPLTLTVG 225 L+ F IGFPLTL +G Sbjct: 184 LNPFSIGFPLTLILG 198 >UniRef50_Q1YV75 Flagellar biosynthetic protein fliR n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV75_9GAMM Length = 256 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 141/237 (59%), Gaps = 3/237 (1%) Query: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQ 77 WP++RV A + +P S R+V RV++ LA ++T I P + + +S L Q Sbjct: 17 WPMIRVSAFLLASPFFSLRAVNVRVRVLLAALLTLMIYPLVDWPIIDPYSAAGLREIFNQ 76 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 ILIG +G +Q A++ G+ + MGL A +DP + N+PV+++ + + L+F Sbjct: 77 ILIGTVMGMLLQIVNASLVIGGQAVSSAMGLGMANMIDP-NMGNVPVISQFFIICSTLIF 135 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLA-LTKAGSLIFLNGLMLALPLITLLLT 196 + GH+ +ISL++++F TLP+G + L + +A L + S+IFL GL+LALP++ LL Sbjct: 136 MGIGGHVLVISLILESFKTLPVG-QMLAPDMLMAVLLQWSSMIFLGGLLLALPIMVSLLF 194 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 +N+ +G++ R AP L+IF +GFP + VG+ L+A M I + L+ E FN++ Sbjct: 195 VNIGVGVITRAAPALNIFAVGFPAMIMVGMVLLATSMTSIGYRIQWLWRESFNVVGQ 251 >UniRef50_C8W1H1 Flagellar biosynthetic protein fliR n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1H1_DESAS Length = 255 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 137/242 (56%), Gaps = 2/242 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFS 67 + L ++F +R+ A + TAP R++P +K+G ++++ + P + + VP Sbjct: 4 MDLLVVFFLVFIRITAFMMTAPFFEYRNIPNLLKIGFSLLLAGIVFPVIKTSGFSVPGGV 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + +G+ LG F F +R AG++I LQ+G + A DP S + ++AR Sbjct: 64 LGYILAVMAEAGVGLMLGLIASFIFHGIRMAGQLIDLQIGFAMAMVFDPLSEMQTTIIAR 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++LAL+ FL NGH +LI LV ++ +P+ + S L + K S +F ++ Sbjct: 124 FLNLLALIFFLNVNGHYYLIESLVKSYDLVPLTAMAIKSGVVLTVVKFFSGMFALAFQIS 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P+I +L+ ++L+LG ++R PQL++F++GFP+ + VGI ++ ++P++ + +F + Sbjct: 184 APIIAVLVIIDLSLGFVSRTVPQLNVFMLGFPVKIVVGILTLSVVVPVLGTLLQDVFKTM 243 Query: 248 FN 249 N Sbjct: 244 HN 245 >UniRef50_Q2RKD3 Flagellar biosynthetic protein fliR n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKD3_MOOTA Length = 255 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 146/254 (57%), Gaps = 3/254 (1%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF- 66 +L+ ++F L+R A TAP R VP VK GL ++ + P L D PVF Sbjct: 2 SYLTQAEIFFLVLVRTTAFFVTAPFFGIRGVPTMVKAGLGFLVALLLLPVL-PADQPVFN 60 Query: 67 SFFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 S + LAV + L G+ALG+ F+A++ AG+++ + MGL+ AT DP + + ++ Sbjct: 61 SSWVYALAVLNESLAGLALGYLASLIFSAIQMAGQLLDIHMGLAMATLFDPQNAASTTIM 120 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + +L LLLF +GH L+ L ++F LP+GG + N A+ K + F L Sbjct: 121 GQFFAILGLLLFFQLDGHHTLLLALQESFRLLPLGGVHFDGNLLWAVVKLFAGTFALALQ 180 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 +A PLI +LL +LAL L+ R PQL++F++GFPL + +G+ +M AL+PL+A ++FS Sbjct: 181 IAAPLIAVLLIADLALSLVARTVPQLNVFILGFPLKVGLGLLVMIALLPLLATVFSNIFS 240 Query: 246 EIFNLLADIISELP 259 ++ + LA +I P Sbjct: 241 QMEHDLALLIRGWP 254 >UniRef50_B5EEM8 Flagellar biosynthetic protein fliR n=2 Tax=Geobacter RepID=B5EEM8_GEOBB Length = 261 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 127/232 (54%), Gaps = 2/232 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWLAVQQ 77 L RV L S P+ R VP RVK+GL +T I P + + VP S + L +Q+ Sbjct: 20 LARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPHVVPNVSDSLGLMLLVLQE 79 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 LIG+ LG QF FAAV G+++G QMG+S A DPA+ N+P +A LA LLF Sbjct: 80 TLIGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNNVPTMAIFQGALATLLF 139 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L FN H + I +VD++ +P+G ++ L + + IF+ + LA P+ LL Sbjct: 140 LAFNVHEYFIRGIVDSYRVVPLGAWHVSGGLLKFLVETSTGIFIIAIKLAAPVSVALLAT 199 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 ++ALG++ R P +++F++ PL + +G ++ +P+ + F ++ + Sbjct: 200 SVALGIVARSFPAMNVFMVSMPLNIGIGFVILGISLPVFVRVLQGSFGQVVD 251 >UniRef50_B8CYQ1 Flagellar biosynthetic protein fliR n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ1_HALOH Length = 259 Score = 129 bits (324), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 2/239 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV--PVFSFFALWLAVQQ 77 + R L L AP+ R P RVK+ LA+M+TF P + V P + L +++ Sbjct: 18 MFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVELPQQTVGILLDVIRE 77 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 LIG +G+ FA+++ AG+ I ++MG + A +DP S + PV+ + +++A+L+F Sbjct: 78 SLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNIMAILVF 137 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L NGH L+ L +F +P+ G L S F L + +F+ +ALP++ L Sbjct: 138 LAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMFIIAFKIALPVMGTLFIA 197 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIIS 256 ++ G L R PQ++IF+IG P+ + +G ++ + + F + LFSE + L II Sbjct: 198 DVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQDLFSEFYRELIKIIK 256 >UniRef50_C8WBS9 Flagellar biosynthetic protein fliR n=3 Tax=Zymomonas mobilis RepID=C8WBS9_ZYMMN Length = 265 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 124/217 (57%), Gaps = 6/217 (2%) Query: 10 LSWLNLYFW----PLLRVLALISTAPILSERSVPK--RVKLGLAMMITFAIAPSLPANDV 63 L+ + Y W LLR A AP+L + P RV L LA+ + + L D Sbjct: 6 LAEIENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMHAHLILPDS 65 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 + SF L+L V +I+ GIA+GF +Q +AA E+IG MGL FA+ +DP + N Sbjct: 66 GLVSFTGLFLVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSN 125 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 VL +I +L FL +GHL LI ++V+++ T+P+GG LN+ FL LT+ +F G Sbjct: 126 VLTQIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIG 185 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPL 220 +++ALP+ ++ + + +G L+R AP L++F +G P+ Sbjct: 186 MLIALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPM 222 >UniRef50_A6F9S0 Flagellar biosynthetic protein fliR n=1 Tax=Moritella sp. PE36 RepID=A6F9S0_9GAMM Length = 260 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 136/229 (59%), Gaps = 6/229 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +S + + + +WP R+++ + PI + + V++ A+ + I+P +P Sbjct: 1 MLNFSSIELMLIIGKIWWPFFRIISALWLLPIFGDTRITPSVRILFALTLAILISPVVPV 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 D + FS ++ LA++QIL G+ G ++ F ++ GEI+ +QMGLS A DP+S Sbjct: 61 VDNINPFSLGSIILALEQILFGLFFGLSLTMLFTMMKLIGEILSMQMGLSMAVMNDPSSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGS 177 + V + ++ + A LLFL+FNGHL ++ +LV++F T PIG LN + L L S Sbjct: 121 GSSHVNSHLLTIFATLLFLSFNGHLIVLDILVESFVTWPIGSSIYLLNIDIILKLV---S 177 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 +F+ LMLA+P I +L +N+ G++NR AP L+++ +GFP+ + +GI Sbjct: 178 WMFMAALMLAMPAIVAMLLVNITFGVMNRSAPSLNVYSLGFPMGMLLGI 226 >UniRef50_A4A5Y4 Flagellar biosynthetic protein fliR n=3 Tax=unclassified Gammaproteobacteria RepID=A4A5Y4_9GAMM Length = 259 Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 144/235 (61%), Gaps = 1/235 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ T E+ L+ Y WP LRV A+ API S S+ RV++ LA+++ +AP LP Sbjct: 4 MEFTPEELTLLLHTYLWPFLRVSAMFLAAPIFSYSSISVRVRVLLAVLVAALVAPLLPTT 63 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L LA++++ IG+ +GF MQ FAAV AG + + MGL FA VDP + + Sbjct: 64 PVVEPLSAVGLVLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMSVDPQNGV 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PV++++ +LA LLFL +GHL LIS +VD+F +P+G F + G+ +F Sbjct: 124 QVPVVSQLNVVLATLLFLAIDGHLILISAVVDSFGLVPVGSAISPEGMFSNVASLGTQLF 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 + L+LALP +T +L +N+A G++ R APQL+IF +GFP+T+ G M +P+ Sbjct: 184 ASALLLALPTLTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPM 238 >UniRef50_C0ZF83 Flagellar biosynthetic protein fliR n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF83_BREBN Length = 260 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 13/258 (5%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFS 67 +L +L ++ +R+ A TAP S R VP + K+ LA +I SLP ++P+ Sbjct: 4 FLMYLPIFMLVFVRMSAFFVTAPFFSIRGVPNQFKIALAFIIAVISFQSLPVQGEIPMDL 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 F +++ +++ L+G+ LG+ + F A++ AG ++ +QMGL+ A +DP + +PV Sbjct: 64 TFVMYV-IKEALVGVILGYICEMMFIAIQVAGGLMDMQMGLAMANVIDPKTGAYIPVTGN 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPI-------GGEPLNSNAFLALTKAGSLIF 180 ++LA+L F + +GH LI ++ ++ +P+ G E N + K +F Sbjct: 123 FKNILAVLYFFSIDGHHMLIRGVISSYQVIPVDIMWAAFGSE----NVMMTAVKTFLTMF 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + M+A P++ L ++L+LG++ + PQ +IFV+G P+ L G L+ +MP Sbjct: 179 TSAFMIAAPIVVALFLVDLSLGIIAKSVPQFNIFVVGLPIKLLAGFLLLIVVMPAFLLTL 238 Query: 241 EHLFSEIFNLLADIISEL 258 LF +F LA+++ L Sbjct: 239 NGLFGNMFRALAEMMKSL 256 >UniRef50_Q3V7F9 Flagellar biosynthetic protein fliR n=5 Tax=Legionella RepID=Q3V7F9_LEGPA Length = 256 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 ++ + WP++R+ L+ T P+LS +P R+K+ ++ +P N + +F L+ Sbjct: 12 MSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN-LSFENFNGLY 70 Query: 73 LA--VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L VQ++L+G+ +GF +Q F G+II +Q GL FA VDP S+ ++P+++++ Sbjct: 71 LVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYL 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 M+ L+FL NGHL ++ L+++F +PIG L+ + + +F +++++P Sbjct: 131 MVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIVWSTIMFSGWMFKEAVLISIPA 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 I LL ++L+ G++ R+APQL++F +GFP+TL +G ++ +P + Sbjct: 191 ILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVG 237 >UniRef50_B0THC2 Flagellar biosynthetic protein fliR n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0THC2_HELMI Length = 266 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 143/257 (55%), Gaps = 19/257 (7%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV--FS 67 L+ L++ ++RV ++ AP+ + K+GL+ MI + S+P +PV Sbjct: 9 LNHLDVLLLMMIRVAGILVLAPVFNFPGFNNLAKIGLSFMIALILFLSMPDGALPVPPQE 68 Query: 68 FFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 F + V Q++L+G+A+GF +Q FAA+ TAG +I +Q+G +DP +P+ Sbjct: 69 LFGYVIVVAQELLLGLAIGFILQLLFAAILTAGHLIDIQLGFGIVNIIDPLWGAQVPMTG 128 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL-------- 178 + +LALL+F+ F+GHL LI +L D+F LP G P +L AGS+ Sbjct: 129 VFLQILALLIFVIFDGHLLLIQVLADSFRILPAAGSP------FSLALAGSISDFIVRLV 182 Query: 179 --IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 + L G+ LA+P+I ++L ++ALGL++R PQ+++FVIG PL + VG++ + +P Sbjct: 183 SGVLLIGVQLAMPIIGIILINDIALGLVSRTVPQMNLFVIGIPLKIIVGVAFLWITLPFY 242 Query: 237 APFCEHLFSEIFNLLAD 253 LF+ F ++D Sbjct: 243 IDGLNRLFTLSFTQVSD 259 >UniRef50_Q3V7I9 Flagellar biosynthetic protein fliR n=7 Tax=Vibrionaceae RepID=Q3V7I9_PHOPR Length = 259 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 141/260 (54%), Gaps = 2/260 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +++ Q +WL +WP R+ A + P+ ++P +V++GLA I+ AP +P Sbjct: 1 MLDISAAQLTAWLGQIWWPFFRLGAAMLMMPVFGGSTIPTQVRVGLAFCISLLAAPLMPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S AL L VQQ++IG +G ++ F T G+I+ +QMGL A DP + Sbjct: 61 MPSVDPLSLDALILGVQQMIIGGIMGLMLELLFGVFTTMGQILSMQMGLGMAMSNDPING 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++P L + + LLLFL +GHL + ++V +F+ P+G P + + + G LI Sbjct: 121 VSIPTLGKYYQLYILLLFLALDGHLVALDVVVQSFNVWPVGEMPSQDALYSVVMRLGWLI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L+ + +LL +N A G++NR APQL++F +GFP+T+ +G+ + I Sbjct: 181 AAAFLLALPAVCAMLL-VNGAFGMMNRAAPQLNVFALGFPMTMLLGLMCLLITTSSIPEN 239 Query: 240 CEHLFSEIFNLLADIISELP 259 L SE ++A++ + P Sbjct: 240 FTRLCSETLAMMANLEAVQP 259 >UniRef50_B2A364 Flagellar biosynthetic protein fliR n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A364_NATTJ Length = 257 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 132/240 (55%), Gaps = 1/240 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL-AVQQI 78 L R+ +I TAPI +P ++K+ ++++T P L + + + L A ++ Sbjct: 18 LTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHIMNVILFAFMEL 77 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 ++GIA+G F++++ AG++I +QMG + A +DP +P++ + +LA+++FL Sbjct: 78 MVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLIGQFKYILAIMIFL 137 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 NGH LI + +++ LPIG +AL + S +F+ + ++ P + L N Sbjct: 138 VINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFVLAIQVSAPALGTLFLTN 197 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 +ALG+L R PQ+++F+IGFP+ + VG + LMP +LF I++ L + + L Sbjct: 198 IALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLGNLFQHIWDGLYNFLQAL 257 >UniRef50_A6TRN9 Flagellar biosynthetic protein fliR n=2 Tax=Alkaliphilus RepID=A6TRN9_ALKMQ Length = 263 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 134/255 (52%), Gaps = 3/255 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDV 63 T Q LS ++++ ++R+ + API S ++P K+ ++ + I P + + D Sbjct: 4 TITQILSNIDIFILLIVRISGIFIIAPIFSRNNIPMMSKIIFSVFLALIILPLVTISEDF 63 Query: 64 PVFSFFALWL-AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 +FFAL + A+Q+ +GI +GF F+ AG I+ Q+G DP + + Sbjct: 64 AANTFFALMVYAIQEFALGITIGFIGSIYFSTFYLAGMIVDTQIGFGMVNVFDPQMNTQL 123 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNA-FLALTKAGSLIFL 181 P++ + ++L L+FL NGH LI + D++ LPIG + S A + LT IF+ Sbjct: 124 PIMGNVYNLLISLVFLAVNGHHLLIKAMFDSYDVLPIGFQFQVSEALIMHLTIIFMEIFM 183 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 L+ P++ + N+ LG+L R PQ+++F++G PL + VG+ + +P + PF Sbjct: 184 MAFKLSAPILATIFLANVLLGILARTMPQMNVFIVGMPLKIIVGLVTIMIALPFLVPFGN 243 Query: 242 HLFSEIFNLLADIIS 256 LF ++F + II Sbjct: 244 ALFEKMFTSIDHIIE 258 >UniRef50_C4V4A3 Flagellar biosynthetic protein fliR n=3 Tax=Selenomonas RepID=C4V4A3_9FIRM Length = 260 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 130/234 (55%), Gaps = 5/234 (2%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS----FFALWLAV 75 L+R + +P ++P ++G A+ +T + P + P FAL AV Sbjct: 18 LVRTSGIFLISPFFGSMNIPIFFRVGTALSMTVVLFPVVDGLGTPYVPENLIMFALT-AV 76 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 ++ IG +GF +FAA+ AG+++ +Q+G + VDP S +P++ + LA + Sbjct: 77 GELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIPLIGSFLYNLAAI 136 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 + L NGH +++ LV++F +PI G N + L + IFL G+ +A+P+ +L Sbjct: 137 ILLATNGHHMILAALVESFRAVPIAGMEGNVSLALLIANFTGTIFLTGMKIAMPITFAIL 196 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 N+ LG+L+R PQ++IFV+G PL L +GI++++ ++P F + LF+E++ Sbjct: 197 LTNVGLGILSRTMPQMNIFVVGIPLQLMIGITVLSMIIPFYVLFLDVLFNEMYG 250 >UniRef50_Q5DY35 Flagellar biosynthetic protein fliR n=37 Tax=Enterobacteriaceae RepID=Q5DY35_ECOLX Length = 260 Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP--VFSFFA 70 L L+F P +R++A + P+L ++ RV++ L++ + I P +P + +P + S + Sbjct: 14 LGLWF-PFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP-HPIPHDLLSLNS 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L L V+QIL G+ G QF F A++ AG+I+ MG+S A DP+S + VLA +++ Sbjct: 72 LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELIN 131 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + A+LLF +GHL L+S+L F PI G L+ + A S + + +LALP Sbjct: 132 VYAILLFFAMDGHLLLVSVLYKGFTYWPI-GNALHPQTLRTIALAFSWVLASASLLALPT 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 ++L + GLLNR+AP L++F +GFP+ + VG+ A L+ Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLL 233 >UniRef50_Q30PK9 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30PK9_SULDN Length = 254 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 5/250 (2%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 QV S+ ++ L F+ R AL PI S ++P +K LA T S+P Sbjct: 5 QVFSDTYIVGFILLFF---RFAALFIAVPIFSHNNIPISIKTSLAFFFTIVFYSSMPPLT 61 Query: 63 VPVFSFFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + V + ++ +A+ ++L G+A+G +Q AF A+ AG I MG S A+ +DP S ++ Sbjct: 62 M-VITVPSIVMAILSELLFGLAIGVILQIAFNAITFAGGQISFMMGFSMASAIDPQSGIS 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 MP++++ + ++AL++ + H W++ + + +P+GG ++ N F + KA S +FL Sbjct: 121 MPIISQFLSLMALMMLFAIDMHHWILLFIDSSLQNIPLGGFVMSENLFTYIIKAMSNMFL 180 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 G M+A P+ L L ++ G+L + PQ ++ VIGFP+ + V +++ A + I + Sbjct: 181 VGFMIAFPITALGLLADIIFGMLMKTMPQFNLLVIGFPIKIMVSFAVLIATISAIMLIIK 240 Query: 242 HLFSEIFNLL 251 E FN L Sbjct: 241 GQMVEAFNFL 250 >UniRef50_B3EAW1 Flagellar biosynthetic protein fliR n=7 Tax=Desulfuromonadales RepID=B3EAW1_GEOLS Length = 265 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 2/237 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFSFFALWLAVQQ 77 L R+ L + P+ + +P R+K+ + IT P L +P +F L +++ Sbjct: 21 LCRIGGLFAALPVFGGKRLPTRIKIAAVLAITLVCLPVLKITPPPLPGDAFTLGLLVMRE 80 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 +LIG+ L F Q FAAV +G+IIGLQMG S ++ +DP+ +++ + +LA L F Sbjct: 81 MLIGLTLAFITQIIFAAVEFSGQIIGLQMGFSISSVLDPSMGTQTQIMSVVQSLLATLFF 140 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L+ N H IS +VD+F +P+GG ++ L A S +F+ G+ LA P++ LL Sbjct: 141 LSLNIHHVFISAIVDSFTVIPLGGWKMSEALIHFLVNATSEVFILGIRLAAPVMVALLLT 200 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254 ++ LG++ R PQ+++F++ FPL + +G ++ + L E F + N +A I Sbjct: 201 SVVLGIMARAFPQMNVFMVSFPLNIGLGFMVLGMTLLLFFHVLELSFGNLANQVAMI 257 >UniRef50_Q97H65 FliR/FlhB fusion protein n=1 Tax=Clostridium acetobutylicum RepID=Q97H65_CLOAB Length = 610 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 127/231 (54%), Gaps = 2/231 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS-- 67 +++ F LRV A ++ +S+P VK+ L++ I+F + P + + V + Sbjct: 3 IAYFTSLFMVFLRVFAFFIALQVMFPKSLPNTVKVMLSLCISFFVMPYINLSQVSALNNG 62 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 F W + +IL G+ LGF F V+ G+ + Q+G S T DP+S N ++ R Sbjct: 63 FLYTWQCICEILTGLILGFFANLMFLGVKIGGQFLDFQIGYSMMTAYDPSSESNASLIER 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++M +++LF + GH +I LV +F+++ +G +N + + F+ G +A Sbjct: 123 FLNMFSVVLFFSIGGHEVVIKELVSSFNSVKLGTFVINDQSVMVAFNVFVQFFVIGFKIA 182 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 LP++ +LL ++ +GL++R PQL++ ++G P+ + +G++ + ++PLIA Sbjct: 183 LPVVLVLLITDIVMGLMSRTVPQLNVMILGMPIKILLGLTCLMIILPLIAK 233 >UniRef50_Q0EZ56 Flagellar biosynthetic protein fliR n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ56_9PROT Length = 260 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 5/233 (2%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV---PVFSFFALWLAVQ 76 +LRV ALI PIL + VP ++K GL +++T I P L A+ V P+ + +A+ Sbjct: 18 MLRVSALIMMLPILGHQLVPAQIKRGLIVLLTILIFP-LVADKVAAIPLKPVAFVIVAIH 76 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 +IL+ A+ Q FAA++ AG++I QMG+S A DP +H V++++ LA+LL Sbjct: 77 EILVAAAIALFAQLIFAAIQLAGQLISFQMGMSVANVFDPMTHSQQSVVSQLAVTLAMLL 136 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 +++ H I+ L+++F PI + + A LT A + +F+ L +A PL+ L+ Sbjct: 137 WISVGAHHMFITALIESFTLFPI-HQAIYFPALSTLTDAAATMFVLALKIAAPLMVLMTL 195 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 + +ALGLL+R PQ+ +F + FPLT+ +G+ A MP FS + N Sbjct: 196 VYVALGLLSRAVPQIQVFFVSFPLTVGLGLLTFALGMPAFVYLVSDAFSTLPN 248 >UniRef50_A1HN22 Flagellar biosynthetic protein fliR n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN22_9FIRM Length = 260 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 134/245 (54%), Gaps = 9/245 (3%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND---VPVFS 67 S L + RV +++TAPIL R++P K G A+++++ + P + VP Sbjct: 9 SQLGFFLLIFTRVTGILTTAPILGSRNIPVYTKAGFALILSYILTPIVVQRSHIIVPDQF 68 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 ++L + ++LIG+ LG+ F AV+ AG+++ +Q+G +DP S +P++ Sbjct: 69 GAYVFLVIGELLIGLILGYISSMIFYAVQMAGQLLDMQIGFGIVNIIDPQSGQQLPLIGN 128 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG---EPLNSNAFLALTKAGSLIFLNGL 184 + +LL+F NGH L+S L +F T+P+G P ++ + +T + + + L Sbjct: 129 FKYIFSLLVFFATNGHHILLSALFTSFKTVPVGAAVFRPQLADLVIDITFS---VLIIAL 185 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++LP++ + ++A+G+L R+ PQ++IF++G P + VGI ++A +P E F Sbjct: 186 KISLPILVAIFLTDIAMGILARIMPQMNIFIVGIPGKIIVGIFMLALTLPFYITLLEVGF 245 Query: 245 SEIFN 249 S ++ Sbjct: 246 SAMYK 250 >UniRef50_C6IVX3 Flagellar biosynthetic protein fliR n=2 Tax=Bacillales RepID=C6IVX3_9BACL Length = 262 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 134/256 (52%), Gaps = 4/256 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + L ++++ R+ A +PI S RSVP K+G A +I I ++ N Sbjct: 2 DTILHGISIFMLIFCRMTAFFVVSPIFSSRSVPNTFKVGFAGIIAVVILLTIGPNQSIPN 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + ++++L+G+ +G+ F+ ++ AG I +Q+G A +DP + + PVL Sbjct: 62 DLGYILVIIREVLVGLLMGYVANLIFSVIQMAGSFIDIQIGFGIANVIDPMTGASAPVLG 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL----NSNAFLALTKAGSLIFLN 182 + ++A L+FL+ NGH +L+ ++ +++ +P+ + N N L + S F+ Sbjct: 122 NLKYIIATLVFLSMNGHHYLLDAVIRSYNWVPLSNQVFQQIYNGNLSEFLVQTFSQAFML 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 ++ PL+ L ++ALG L R APQ +IFVIG P+ + VG+ ++ L+P + Sbjct: 182 AFQMSAPLVVALFVTDVALGFLARTAPQFNIFVIGIPVKIIVGLLVLLVLVPGFIVAFQA 241 Query: 243 LFSEIFNLLADIISEL 258 LF +F L D++ + Sbjct: 242 LFEVLFRALHDLLGTI 257 >UniRef50_A4SI10 Flagellar biosynthetic protein fliR n=4 Tax=Gammaproteobacteria RepID=A4SI10_AERS4 Length = 260 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 134/239 (56%), Gaps = 18/239 (7%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 +L +++ +WL ++WP +R+ P+ + +P +V+L A +I+ IAP L Sbjct: 4 LLSLSAADLTAWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLFAFIISLLIAPML-- 61 Query: 61 NDVPV---FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 ++PV FS AL L V+Q+L G+ G +Q F + AG+I+ +QMGL+ A DP+ Sbjct: 62 KEMPVVDPFSTGALVLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGLAMAVMNDPS 121 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + + P+++++M + LLFL NGHL + +LV + + P G L L Sbjct: 122 NGDSAPIVSQLMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSS-------LDLLDMKG 174 Query: 178 LIFLNG------LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 +I L G L+L LP + +L +NL G++NR AP L+IF +GFP+TL +G+ MA Sbjct: 175 VIGLFGWCIGAALILTLPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMA 233 >UniRef50_A4Y0Q5 Flagellar biosynthetic protein fliR n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q5_PSEMY Length = 264 Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 143/258 (55%), Gaps = 11/258 (4%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKL---GLAMMITFAIAPSLPAND 62 + Q+L+ L Y+WP R+LAL+S AP+ + ++V RV++ + A P +P D Sbjct: 8 ASQYLTSLQAYWWPFCRILALLSMAPLFNHKAVSVRVRILLALALTVALGAALPDMPPID 67 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL-N 121 P+ S L A++QI G+ LG T+Q F GE++ QMG+S A + DP + + + Sbjct: 68 -PL-SLQGLMTALEQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSS 125 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLI 179 ++ ++ +L +LLF +GHL +S+L +F P+G L + +F+ +A + + Sbjct: 126 SSIVYQLYFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSGLHYLGAQSFV---QAFAWV 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +++ LP++ L + GLLNR++P +++F +GFP+++ +G+ + +P + Sbjct: 183 LAAAVLVTLPIVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDS 242 Query: 240 CEHLFSEIFNLLADIISE 257 HL E+ N + I+ E Sbjct: 243 YLHLTRELLNGIGVILHE 260 >UniRef50_B8I3N6 Flagellar biosynthetic protein fliR n=2 Tax=Clostridium RepID=B8I3N6_CLOCE Length = 265 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 144/269 (53%), Gaps = 16/269 (5%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +Q+ L+ + L+ +R+ L TAPI R++P K+G A IT +A S+ Sbjct: 1 MQIPFGMLLNNVELFLLIFVRMTGLFVTAPIFGRRNIPVYYKVGFAF-ITAILASSVIRV 59 Query: 62 DVPV----FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 D + F FAL++ +++ L+GI +GF F + AG+II +Q+G DP Sbjct: 60 DHIINTDNFLIFALYI-LKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPI 118 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE---PLNSNAFLALTK 174 S++ +PV A + +L++++FL NGH LI L ++F +P+G P + + + + Sbjct: 119 SNIQIPVTANLYFILSMIIFLLTNGHHMLIRALYESFQIIPLGSAVIGPKLKDDVIGIMQ 178 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 +F G +A P++ + ++ LG++++ PQ+++F++G PL + VGI ++ +P Sbjct: 179 G---VFSMGFKIAAPIVAAIFITDVVLGIISKTIPQMNVFILGMPLKIFVGILIILITIP 235 Query: 235 ----LIAPFCEHLFSEIFNLLADIISELP 259 ++ + + ++IF L D+ + L Sbjct: 236 AFVYIVTVITDDMNTQIFKFLKDMGNSLK 264 >UniRef50_A5V2S0 Flagellar biosynthetic protein fliR n=3 Tax=Sphingomonadaceae RepID=A5V2S0_SPHWW Length = 260 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 10/238 (4%) Query: 8 QWLSWLNLYFW----PLLRVLALISTAPILSERSVPKRVKLGLAMMITF-AIAPS---LP 59 Q L+ + W ++R A AP+ VP +++ +A+ I A+A + +P Sbjct: 4 QGLAGIETQLWLWMIAMIRPGAAFIAAPVFGAPQVPMQLRAVVALAIGIPALANTPFVMP 63 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + F L +IL G+ALGF +Q F+A AGE+IG MGL FA +DPA+ Sbjct: 64 VGGIVTIEGF--LLVAGEILAGLALGFAVQIGFSAALVAGEVIGNAMGLGFAGMMDPATG 121 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 P +++ + +LA LFL GHL L +++V+++ LP G L + + L G + Sbjct: 122 SPSPAVSQYLSLLATFLFLATGGHLQLAAIIVESYRALPPGEAWLGARSIQGLALFGGDL 181 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 F GL +ALP+ L+ + L + +L R APQ++IF +G P TL G+ L+A P++A Sbjct: 182 FAAGLAIALPVGFALILVQLVMAMLARSAPQMNIFSVGLPATLMAGLVLLAIAAPVMA 239 >UniRef50_B1I5J9 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5J9_DESAP Length = 253 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 128/232 (55%), Gaps = 5/232 (2%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 EQ +++L ++ R+ A I+ P+ + R +P VK GLA +++ A+ PS P+ Sbjct: 2 EQLVTFLLVF----TRLAAFIAACPVFAMREIPPTVKAGLAFVLSLALLPSAGTAAPPLD 57 Query: 67 SFFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 SF LA+ ++ +G+ LG F + AG+ IG Q+G + A + P + ++ Sbjct: 58 SFLGFSLALAKEAAVGLGLGIFTSLVFHGLLLAGQYIGFQIGFAIAEMMSPGTEGERAIV 117 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 +R+M + AL+ F++ +GH LI+ L +F +P+G L + KA +F+ L Sbjct: 118 SRLMWLFALVFFVSIDGHHLLIAGLAKSFELVPLGAAVAQMKTTLFMAKAYGGLFVIALT 177 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 +A P++ +LL + LGL+ RM PQ+++F++GFP + G+ + +P+I Sbjct: 178 IAAPVMAVLLVTDAILGLMVRMVPQINVFMLGFPFKVFAGLFALMVTIPVIG 229 >UniRef50_C6BYP0 Flagellar biosynthetic protein fliR n=4 Tax=Desulfovibrionales RepID=C6BYP0_DESAD Length = 267 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 122/212 (57%), Gaps = 2/212 (0%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFALWL 73 ++ L RV ++ P S+PK VK L +++T I P + + +P + + Sbjct: 14 FYLTLFRVSIVLFLLPFFGGNSIPKTVKAALTIVLTLGIWPHVTFEGSLMPASPYNIALM 73 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + ++++G+ +G ++ FAA++T G +IG+QMG S +DP + N V A + M A Sbjct: 74 ILGEMVLGLVMGISVHVMFAAIQTGGNLIGVQMGFSMVNVLDPLTGTNEAVTAHFLYMCA 133 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 +L+FL+ NGHL+L+S +V++F +P G ++S + +F+ + +A P+I Sbjct: 134 ILVFLSINGHLYLMSAMVESFKYIPPGQIFISSTLTSQIMSISKDLFVLAVKVASPIIAT 193 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 + ++L L L+++MAPQ+++ ++GFPL + G Sbjct: 194 IFVVDLGLALISKMAPQMNVLMLGFPLKILAG 225 >UniRef50_A3V236 Flagellar biosynthetic protein fliR n=3 Tax=Rhodobacterales RepID=A3V236_9RHOB Length = 275 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 140/255 (54%), Gaps = 7/255 (2%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + + ++ ++F LR+ A +AP ++P +V++ +++ I F + D Sbjct: 20 QSLIDFMLVFFLHTLRLSAFFLSAPFFGAAAIPVQVRVIVSVAIAFGFYGLIDVPDPQNL 79 Query: 67 SFFAL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 F ++ +A+ +++IG++LG AF+AV GE I GL FA +DP S PV+ Sbjct: 80 PFLSMIEVALIEVVIGLSLGLAFTIAFSAVALTGEKIAASAGLGFAAQMDPNSGGQTPVI 139 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFL--ALTKAGSLIFLNG 183 ++ +++ A+ FL+ +GHL +I L+ ++ LP+ G+P +AF+ L AG + F Sbjct: 140 SQFLNLFAIAAFLSLDGHLHMIGLIRMSYEVLPL-GQPFKFSAFITGGLAAAGHM-FTIA 197 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLT-LTVGISLMAALMPLIAPFCEH 242 L LP++++LL N+ +G++ R APQL++F GFPLT LT ++L + P + E Sbjct: 198 SQLMLPVVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYVSTAPFASGIAE- 256 Query: 243 LFSEIFNLLADIISE 257 + I + D I E Sbjct: 257 MIEFILEFIEDTIGE 271 >UniRef50_Q2LT08 Flagellar biosynthetic protein fliR n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT08_SYNAS Length = 259 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 136/249 (54%), Gaps = 15/249 (6%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILS-ERSVPKRVKLGLAMMITFAIAPSLPAND 62 +T EQ + ++ LRV ++I PI ++++P +K GL+++ITF + P + + Sbjct: 6 ITPEQIACLIFIF----LRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMD- 60 Query: 63 VPVFSFFALWLA------VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 F F + L + +ILIG+ +GF +F FA ++ AGE+IG QMG S +DP Sbjct: 61 ---FGFQLMELTPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDP 117 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 + + +++++ LA+L+FL N H +S + ++F + L L Sbjct: 118 VTSTQVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLS 177 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 +F+ + ++ P++ +L+ ++ALG++ R PQ++IF++GFPL + +G+ + P+ Sbjct: 178 MEVFIIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIF 237 Query: 237 APFCEHLFS 245 +C LF+ Sbjct: 238 VNYCIRLFN 246 >UniRef50_Q4JMS6 Flagellar biosynthetic protein fliR n=1 Tax=uncultured bacterium BAC17H8 RepID=Q4JMS6_9BACT Length = 270 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 124/211 (58%), Gaps = 9/211 (4%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-SFFALWLA 74 YF LR+ A + +API R +P +V++ +A + AI +P + S + + Sbjct: 24 YFLASLRIGAFLLSAPIFGARWLPLKVRIIMAFTLAAAIVGDVPDVGTDLLTSSVGVSMM 83 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 +I IG+ G T+ FAAV AGE I GL +A VDPA+ PV+++I+ + L Sbjct: 84 FIEIAIGLTAGLTLTIWFAAVLLAGEKIASSAGLGYAAQVDPATGGQTPVVSQILYLFLL 143 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGG----EPLNSNAFLALTKAGSLIFLNGLMLALPL 190 ++FL+ +GHL I +++++ LP+G E L ++ +T AGS+ FL ++ LP+ Sbjct: 144 VIFLSIDGHLLAIGTMLESYRILPVGASVAPEVLIAS---GITAAGSM-FLAATIIMLPI 199 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLT 221 T+LL +N+A+G++ R APQL++F GFP++ Sbjct: 200 TTVLLMINVAIGIITRSAPQLNLFSFGFPIS 230 >UniRef50_B0RSX9 Flagellar biosynthetic protein fliR n=13 Tax=Xanthomonadaceae RepID=B0RSX9_XANCB Length = 263 Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 6/250 (2%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 + ++ + + W +LR AL++ P++ R+VP RV++ L + A+AP LP V Sbjct: 9 IDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPILP--PV 66 Query: 64 PVFSFF---ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P + F A+ +++ +G ++GF ++ F A AGE++ GLSFA DP + Sbjct: 67 PEWDGFNATAVLSIARELAVGASMGFMLRLIFEAGALAGELVSQATGLSFAQMSDPLRGV 126 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL-I 179 V+A+ + LLF NGHL +I+LLVD++ LPIG ++ AF + L + Sbjct: 127 TSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTAVPDAAAFAEVAPTLLLQV 186 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 GL LALP++ +L +NLA G L + AP L+ +G PLT+ +G+ L+++ AP Sbjct: 187 LRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP 246 Query: 240 CEHLFSEIFN 249 + LF F+ Sbjct: 247 VQRLFDSAFD 256 >UniRef50_C1SNG7 Flagellar biosynthetic protein fliR n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG7_9BACT Length = 257 Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 114/201 (56%), Gaps = 5/201 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL---PANDVPVFSFFALWLAVQQI 78 R+ A++ T P+ + +++ LA++I I PSL P ++P + + + ++I Sbjct: 20 RIGAILFTVPVFGSNVIKPQIRFVLAILIAMVIFPSLEAMPYGNLP--TGIIIVMVFKEI 77 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 L+G+ +G F F + G+I+GLQMG S +DP S+ + +++ +++ LL F+ Sbjct: 78 LVGVCIGILSNFLFIGAQLGGQIVGLQMGFSVVNVMDPQSNTQLSIISSFLNIGMLLFFI 137 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 GH ++ + ++F ++PIGG +N AF + K S IFL + + P I LL + Sbjct: 138 AVGGHYLVLGAIAESFRSIPIGGAEINPIAFNYIAKLFSYIFLIAIKIMAPAIITLLIFS 197 Query: 199 LALGLLNRMAPQLSIFVIGFP 219 +G++ ++APQ+++ ++GFP Sbjct: 198 TVIGVIGKLAPQINLMIVGFP 218 >UniRef50_A4J751 Flagellar biosynthetic protein fliR n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J751_DESRM Length = 255 Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 134/238 (56%), Gaps = 2/238 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSF 68 L ++ +F +R+L+ I + P+ + +P VK GL++++ AP + PA Sbjct: 4 LVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGL 63 Query: 69 FALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + L LAV ++ +G+A+G F F A+R AG+++ Q+G + A +DP +++R Sbjct: 64 WGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSR 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + + L+L++ +GH LI LV ++ +P+ +N L + + + F + + Sbjct: 124 FLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAVQIC 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 P++ +L+ +LA+GL+ + APQL+IF +GFPL + VG+S +A L+P + ++LF Sbjct: 184 APVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLFD 241 >UniRef50_UPI0001C312BD flagellar biosynthetic protein FliR n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312BD Length = 266 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 131/241 (54%), Gaps = 6/241 (2%) Query: 3 QVTSEQWLSWLNL-----YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP- 56 Q T+ Q L+ L + +F L RV L AP+ + R VP R + +A+ + P Sbjct: 5 QTTANQLLAALGVRNVVGFFLVLARVSPLFLVAPMFNSRQVPARARTIVALAFALGLYPL 64 Query: 57 SLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 ++ +P +F + L V+++L+G+A + FAAV AG ++ +G +F +DP Sbjct: 65 AVAGQTLPTEAFAIVGLIVKEMLVGLAFALCVSVMFAAVDAAGTLLDFMVGFAFGGSLDP 124 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 + VLAR+ ++A+ +F+ NG WLI + TF +P+ P ++ + Sbjct: 125 ITGNQSAVLARVYSLVAVAIFIAINGDAWLIQGMSRTFDIVPLSASPDFASISQGVVAVF 184 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 + IF + L +A P++ + ++A GL++R+ PQ+++F +GFP+ + VG+ ++AA +P + Sbjct: 185 TTIFASALAVAAPVLIACVLTDVAFGLVSRVVPQMNVFAVGFPVKVIVGLVVVAASLPFV 244 Query: 237 A 237 Sbjct: 245 G 245 >UniRef50_A4YB60 Flagellar biosynthetic protein fliR n=18 Tax=Gammaproteobacteria RepID=A4YB60_SHEPC Length = 259 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 2/227 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 ML +TS + + ++WP R++ P+L VP V++ LA+ I +AP LP Sbjct: 1 MLSLTSTEISMLIGGFWWPFCRIMGAFMIMPLLGNAYVPVMVRIFLALSIAALLAPMLPP 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S +L+LA++Q+LIG L + + G I+ +QMGL+ A DPA+ Sbjct: 61 VPPVDAISLASLFLAIEQLLIGFMLALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + P+++ + L+FL NGHL I+++VD+F PI G + + L + + Sbjct: 121 DSSPIISEWFQIFGTLIFLALNGHLVAINIIVDSFRLWPI-GHGIFELPLMGLVSRLAWL 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 F LMLA+P + +L +N+ G+L+R AP L+IF +GFP+T+ +G+ Sbjct: 180 FAASLMLAIPAVLAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGL 226 >UniRef50_B6AMB3 Flagellar biosynthetic protein fliR n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMB3_9BACT Length = 262 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 3/243 (1%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA 74 LY W L RV L+ + P+LS ++VP R+K +A+ + F I P + N P F+ WL Sbjct: 13 LYVWVLARVSGLVVSMPVLSGKAVPVRIKALIAVALAFLIEPVVLGNVSPP-RLFSAWLG 71 Query: 75 --VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 V + +G+ALGF+ FAAV AGE+ G+Q+G ++P +P+L + + Sbjct: 72 SLVTEFFVGVALGFSSYLVFAAVSFAGELAGVQVGFGLVDVINPLGLAEVPLLGTFQNSV 131 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A L+FL H LI L ++ +P G + + + + G+ LA P + Sbjct: 132 AFLVFLASGTHEALIWALGRSYAVVPPGEGRFRTIFYEGYLGVFAHFMVLGITLAAPFLV 191 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 + LNLA+G L+RM PQ+++ +GFP+ + G+ L+ +P + E F + L Sbjct: 192 GGIVLNLAMGFLSRMMPQMNLISVGFPVLVLGGLGLLILSLPFLGSVLEDSFFRMDETLG 251 Query: 253 DII 255 I+ Sbjct: 252 GIL 254 >UniRef50_C8WYW7 Flagellar biosynthetic protein fliR n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW7_DESRD Length = 260 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 12/255 (4%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 S+ W S+L + +RV A+I + P+LS P R++ GLA+++ I P++ +P Sbjct: 8 SQHWPSFLLCF----IRVAAIIGSMPVLSGGQTPARLRAGLALVLAVIIFPAVDGT-IPD 62 Query: 66 FSFFALWLAV---QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 +F L L V Q++L+G+ LGF + F A + G I+G QMG + A +DP S + Sbjct: 63 INFAPLRLFVLGSQEVLLGLMLGFIGRLLFLAAQFGGTILGFQMGFAAANILDPQSQQQI 122 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 ++++ ++LA L+FL +GH + L +F +P GG +A ++ +F+ Sbjct: 123 QLMSQFQNVLASLVFLAVDGHHVFLRSLARSFEVVPPGGGLHLQDAVPSMVAMTGEMFVL 182 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 GL L P+ +L+ + LG+++R+ PQL+ F++ FP+ + V + L A F Sbjct: 183 GLQLTAPIYVILILSDFILGIMSRIFPQLNAFMLKFPINIGVAFFFLG----LSAEFIVS 238 Query: 243 LFSEIFNLLADIISE 257 + FN LA + E Sbjct: 239 ILISEFNGLAQRLVE 253 >UniRef50_C1A548 Flagellar biosynthetic protein FliR n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A548_GEMAT Length = 295 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 117/221 (52%), Gaps = 10/221 (4%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAI---APSLPANDVPVFSFF-ALWLAVQ 76 LR+ L+ AP S +SVP +KL AM++ FA+ +L D + A +LA Sbjct: 26 LRIGGLLLIAPAWSAKSVP--MKLRTAMLVLFAVLLLPTALATTDRATLAITPATFLA-- 81 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + IG A GF A AGE++ +GLS A DP ++ + M ++AL L Sbjct: 82 ETAIGFAFGFAAALVIAGAEFAGELMTTTIGLSGAAIFDPVNNTQGAIFGSFMQLMALTL 141 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNA-FLALTKAGSLIFLNGLMLALPLITLLL 195 L GH+ +I + +F LP+G P++ A FLALTKAG IF GL A P+I +L Sbjct: 142 LLITGGHIVMIEAIAKSFSVLPLG-APIDMQAGFLALTKAGGTIFATGLQFAAPVIAAIL 200 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 N+AL +L R APQL I + FPL + +G+ A + LI Sbjct: 201 VTNIALAILGRAAPQLQIMSLAFPLQIGIGLLTFAGSVGLI 241 >UniRef50_B6BI91 Flagellar biosynthetic protein fliR n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BI91_9PROT Length = 255 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 9/238 (3%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 +V S+ ++ L F+ R AL API S +++P +K +A T S+P Sbjct: 6 EVFSDTYIVGFILLFF---RFAALFMAAPIFSHKNIPMTIKTSMAFFFTIVFYSSMPPLQ 62 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + + + + ++L G+A+G + A+ + AG I MG S A+ +DP + ++M Sbjct: 63 IDINVPTVVLAILSELLFGLAIGVVLLLAYNVITFAGGQISFMMGFSMASAIDPQTGVSM 122 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 P++++ + ++ L++ L + H WL+ + + +P+GG L + F + KA S +F+ Sbjct: 123 PIISQFLSLMGLMILLAIDLHHWLLLFIDGSLSAIPLGGFLLTEDLFNYMIKATSNMFIV 182 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 G M+A P+I L ++ G+L + PQ ++ VIGFP I +M A M LIA F Sbjct: 183 GFMIAFPIIALSWLADVIFGMLMKTMPQFNLLVIGFP------IKIMVAFMVLIATFS 234 >UniRef50_C8PRD8 Flagellar biosynthetic protein fliR n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRD8_9SPIO Length = 266 Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 28/241 (11%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALW 72 L+F +R+ A+IST P+LS R+VP+ K+ LA +I F + P + DV F+ Sbjct: 15 LFFLVCVRIFAMISTTPLLSTRAVPRIAKISLAGLIGFLVMPVAYGSPLDVQGFNLDYAL 74 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 L V + L+G+ GF + FA+ TAG+ QMG + D + + P++ + ++ + Sbjct: 75 LVVGEALLGVLTGFFISIIFASFSTAGQFFSYQMGFGVSEVYDALAQIENPLMGQFLNFI 134 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGG-----EPLNSNAFLA---------LTKAGSL 178 A+L+FL G F TL +GG + +N FL +T GSL Sbjct: 135 AVLIFLQIKG-----------FQTLFLGGVLRSFQSINCFMFLEKRELVASFLVTNLGSL 183 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 FLN +M+A+P++ L +++++GLL++ APQ+++ GFP+T+ + L+ +P +A Sbjct: 184 -FLNAMMIAMPVMGTLFLVHVSMGLLSKAAPQMNLLSEGFPITILLTFFLLTVSLPFMAN 242 Query: 239 F 239 F Sbjct: 243 F 243 >UniRef50_C4Z5H7 Flagellar biosynthetic protein fliR n=3 Tax=Bacteria RepID=C4Z5H7_EUBE2 Length = 257 Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 114/218 (52%), Gaps = 1/218 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L+ L+ L+R+ + + AP + +VP RVK+G + +T + P V Sbjct: 7 LAQFELFVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVEYNGMI 66 Query: 70 AL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + V++I++GI LG F + AG+II + +G+S A DP + + + ++ Sbjct: 67 EYAIIVVEEIIVGILLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNF 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +LL + H +L+S +V+T+ +PIGG + + + S F+ G +AL Sbjct: 127 YYYMMMLLLIISGMHQYLVSAIVETYRVIPIGGVKFGAGIYTGIIGFVSDFFVIGFRIAL 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 P+ +L LN L +L +++PQ+++FV+G L + VGI Sbjct: 187 PVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGI 224 >UniRef50_A9KNE1 Flagellar biosynthetic protein fliR n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE1_CLOPH Length = 255 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 129/248 (52%), Gaps = 1/248 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + L +F L+R+ A I T P S ++VP++VK+GL++ + + ++P +++ Sbjct: 5 VEQLVFFFVILVRISAFIYTGPFFSLKNVPQKVKIGLSLTLAIILNQTIPYSELVYEGVI 64 Query: 70 ALWLA-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + V + L G +GF F + AG+++ +++G S DP S+ + + A Sbjct: 65 GFAIVIVGEALAGAIMGFFSNICFQILSLAGQLMDMEIGFSMVNEFDPISNAQVTITANF 124 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 +L L N H ++I LVD++ +P+GG LN + + + F+ + L Sbjct: 125 YHYAVMLFLLITNMHHYIIKALVDSYQVIPVGGAKLNPLIYTVMVQFVVDFFVIAFRIIL 184 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+ +L +N+ L +L ++APQ+++FVIG L + +G ++ + +I + +F+E+ Sbjct: 185 PIFASMLIVNVVLAILAKVAPQMNMFVIGLQLKVLIGFIVLLFMTLMIPSVADFIFTEMM 244 Query: 249 NLLADIIS 256 +L IS Sbjct: 245 GMLKSAIS 252 >UniRef50_A1T0L3 Flagellar biosynthetic protein fliR n=4 Tax=Gammaproteobacteria RepID=A1T0L3_PSYIN Length = 259 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFF 69 WL L++WP +R+ + API + SVP +V+L LA+++ +AP + P + FS Sbjct: 10 QWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQ 69 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 A+ L+V Q+L G+ GF Q F T G+ I +QMGL+ A DPA+ +++ ++ R+ Sbjct: 70 AIILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGVSVAIIGRLF 129 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFLNGLMLAL 188 LLFL F+GHL +++L+V++F PI G L S A + +F + +A+ Sbjct: 130 LFACTLLFLAFDGHLAILALMVESFTIWPIKQGFSLGSLALIISMMV--WMFASAFAIAI 187 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 P I +L N + G +N+ AP L++F +GFP+T+ +G+ Sbjct: 188 PAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGL 225 >UniRef50_A3DCP2 Flagellar biosynthetic protein fliR n=3 Tax=Clostridium thermocellum RepID=A3DCP2_CLOTH Length = 261 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 120/232 (51%), Gaps = 5/232 (2%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV---PVFSFFALWLAVQQ 77 +R+ L API R++P K+G + M + ++ ++ ++ +F L L ++ Sbjct: 20 VRMTGLFVIAPIFGSRNIPTYCKIGFSFMTALILVNTIKVQELYFSNIYEYFILVL--KE 77 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 L+GI LG+ F A+ AG+ I +Q+G +DP + + + + +L +L+F Sbjct: 78 FLVGITLGYVAYMIFTAIYVAGQFIDMQIGFGVVNVIDPLNSTQVSITSNFYFLLCMLVF 137 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L GH LI L +++ +P+G + + + IFL ++ P+ ++ Sbjct: 138 LICRGHYILIRALFASYNYIPVGTGVFGEDMVNDIVRVFGNIFLIAFKISAPITISIMIS 197 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +ALG++++ PQL++F++G PL + +G+++M +P+ E+L + I N Sbjct: 198 EVALGIVSKTVPQLNVFMVGMPLKIILGLAVMVITIPMFLNLVENLITGIDN 249 >UniRef50_Q0AYL9 Flagellar biosynthetic protein fliR n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYL9_SYNWW Length = 253 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP---ANDVPVFSFF 69 L +F+ L R+ L TAPI S R +P RV+ + +M+ +A +P + ++ F Sbjct: 5 LESFFFLLARLSGLFITAPIFSSRMMPGRVRALIVIMLAATLAYFVPVEYSRNINTPGLF 64 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 LAV+ I IG +GF + A ++ +G+++ + MG S VDP S +P++ Sbjct: 65 IAALAVE-IFIGYTIGFVIYAVLATIQLSGQLMDMLMGFSIVNVVDPQSGTQIPLMGNFT 123 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 LALL +L +GH +L+ L ++ +P+ L L + G+ IF+ + +A P Sbjct: 124 QALALLTYLAIDGHHYLLQALAQSYAIVPVMSAHLPGGFLELLVEVGTYIFVVAVKIAAP 183 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 ++ +LT ++A+G + R PQ+++F++G PL + +G+ + L+P+ LF+E F Sbjct: 184 MLVAILTSDVAMGFIARTVPQMNVFLVGLPLKIFLGLITLLLLLPIYLWVYNVLFAEFFG 243 Query: 250 LLADII 255 L II Sbjct: 244 YLDRII 249 >UniRef50_C7R0I3 Flagellar biosynthetic protein fliR n=2 Tax=Micrococcineae RepID=C7R0I3_JONDD Length = 253 Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 122/216 (56%), Gaps = 12/216 (5%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALWLAVQ-QI 78 +R +A AP S RS P VK+ LA+ + A+AP++ PA VP +F LA+ Q+ Sbjct: 18 VRFIAFFVIAPPFSARSFPATVKMMLALGMALAVAPTITPA--VPAQNFGTYMLALGLQV 75 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 +IG +LGF + FAAV +AG +I + G + A DP + +N + R+ M AL L Sbjct: 76 VIGASLGFIVYLVFAAVESAGGMIDMTGGFAMAQGFDPLNQVNGAQMYRLFQMTALALLF 135 Query: 139 TFNGHLWLISLLVDTFHTLPIGG----EPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 NGH ++ + +F P+ G + + + LT +FL + +A PLI +L Sbjct: 136 ASNGHHLIVGGFIRSFEFAPLAGGINMDRMGQSVATGLTD----LFLAAIQIAGPLIVVL 191 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 + ++ +GLL+R+AP L++FV+ FPL + + I+L++ Sbjct: 192 VLADVGMGLLSRVAPALNVFVLSFPLKIFLTITLVS 227 >UniRef50_A6W0V6 Flagellar biosynthetic protein fliR n=2 Tax=Marinomonas RepID=A6W0V6_MARMS Length = 260 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML++ +Q LS + P R+ A P+ R V RV++ + ++ I P + Sbjct: 1 MLELHPDQLLSLTISFLLPFFRIGAFFMALPLFGSRLVSPRVRIAFSFLVAIIITPVIDV 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + L +Q++IG LGF + F AG++ ++ GL FA DPA+ + Sbjct: 61 PNYDPISPAYIVLIAEQLVIGFVLGFVVTILFQLFSLAGQLAAMKAGLGFAMSNDPANGI 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ L + + L FL NGHL +I L ++F+ PI G +S + L G +F Sbjct: 121 SVATLGQYYLSMVALAFLGTNGHLVMIEYLAESFNYWPI-GSGFDSQRYWQLVLLGGWMF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTL 222 L++ LPL +L +NL+ G++ + +PQL++F +GFP+ + Sbjct: 180 EKALLIVLPLAVAVLVINLSFGVVAKASPQLNVFALGFPIIM 221 >UniRef50_A5D0I0 Flagellar biosynthetic protein fliR n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0I0_PELTS Length = 254 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 1/239 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND-VPVFSF 68 LS+L +F LR A ++ P+ + R VP +K + + I P L N+ +P+ ++ Sbjct: 4 LSYLAAFFLVFLRTAAFMTAGPLYALRGVPPLLKAAFCLALAAVIFPVLDLNEPLPLDAW 63 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 A ++ +G+ LG + + R AG+II Q+G S A DP +L++ Sbjct: 64 GYGLAAARETGLGLLLGTAVTMILNSFRMAGQIIDFQIGYSMAALADPQYGTQNTLLSQY 123 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +LAL+ FL +GH LI+ LV+++ +P+ N A L + S F L ++ Sbjct: 124 LYLLALVFFLVVDGHYSLIAGLVESYRLVPLNAAVFNGAAASVLLRMFSGSFAIALQVSA 183 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ +L+ +L LG L R APQL++F+ GFP+ + G+ ++ L+PL+ L I Sbjct: 184 PVLAVLVICDLTLGFLARTAPQLNVFLTGFPVKIAAGLLTLSFLIPLLGTVLRSLLGLI 242 >UniRef50_B8FTQ3 Flagellar biosynthetic protein fliR n=2 Tax=Desulfitobacterium hafniense RepID=B8FTQ3_DESHD Length = 260 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 18/232 (7%) Query: 8 QWLSW-LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITF-------AIAPSLP 59 ++L W L L+ L R +I AP+ R VP VKLGLA+ I+ A P +P Sbjct: 5 EFLQWNLTLFLLILSRWAGMIMLAPVFGARGVPAMVKLGLAVSISIILYPLIMAAGPQIP 64 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + +P + L +++I++G+ +GF + A + AG++I +QMG + + +DP Sbjct: 65 SETLPYAA-----LLIKEIVVGLVIGFVIYAITAVLEGAGQLIDMQMGFNMSGAIDPIFG 119 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPI--GGEPLNSNAFLALTKAGS 177 + ++ +LA++L L N H +LI+ +V ++ +PI G P N ++ L + Sbjct: 120 VQSAMMGNFQMILAIMLLLATNSHHYLIAAMVKSYTYVPINPGALPQGLNYYIFLIRE-- 177 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 IF + LALP+I L+ ++ +GLL R PQ++IF + FP+ + G +++ Sbjct: 178 -IFTLSVQLALPVIGALVLTDIGVGLLMRTVPQMNIFTVIFPVKIIFGFTIL 228 >UniRef50_D0WZK5 Flagellar biosynthetic protein fliR n=1 Tax=Vibrio alginolyticus 40B RepID=D0WZK5_VIBAL Length = 254 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 2/206 (0%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSFFALWLAVQQILI 80 RV A+ + P + +P V+ LA+ I P +P V +FS +L+LA +Q + Sbjct: 17 RVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLFLAFEQAIW 76 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G+ G + F G++I LQMGL A DP + L++ +L RI + + LLFL Sbjct: 77 GVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLLFLAL 136 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLA 200 GHL +I +++ +F P+ G + S + + +F + L LALP I +L N++ Sbjct: 137 EGHLLVIDIVIQSFVVWPV-GSGITSLSLQGVVNIFGWMFASSLALALPAIVSMLLANIS 195 Query: 201 LGLLNRMAPQLSIFVIGFPLTLTVGI 226 G++NR AP L+++ +GFP+T+ +G+ Sbjct: 196 FGVMNRAAPSLNVYALGFPMTMLLGL 221 >UniRef50_B1K3A1 Flagellar biosynthetic protein fliR n=3 Tax=Betaproteobacteria RepID=B1K3A1_BURCC Length = 265 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67 Q L N FWP R+ A ++ +PIL + VP R++L +A+ + AI P +P +PV Sbjct: 7 QLLPLANTIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPT--MPVID 64 Query: 68 FFALW---LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 L +Q+LIG LGF A++ G I Q+GLS A DP + V Sbjct: 65 LLQLEGVAAMAEQVLIGGLLGFVFHLVLCALQIFGTIASSQLGLSMAQINDPMNGQMADV 124 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 L +M ++ +LLF +GHL L S++ +F P+G + +A L A IF + Sbjct: 125 LTSVMYVVFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIFSAAV 184 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 LALP++ L + + LGLLNR+AP L+IF +GF +T G Sbjct: 185 ALALPVMFATLVVQVGLGLLNRVAPALNIFALGFSITTMFG 225 >UniRef50_A1SEN1 Flagellar biosynthetic protein fliR n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN1_NOCSJ Length = 253 Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 4/214 (1%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV 75 Y +R+++ ++ P S R+VP K+ L + + FA P +P+ + L Sbjct: 13 YLLASVRIVSWLAVVPPFSGRAVPMMAKVVLGLGLAFAAVPD--GGSIPLSTVGLLLNVG 70 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 Q+LIG+A+GF Q F A+ AG +I + G S A+ DP S V + MLA + Sbjct: 71 TQVLIGLAMGFVTQLLFGAIAAAGSLIDVFGGFSLASGFDPLSMNANTVFGKFHQMLATV 130 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L GHL +I L+ TFH LP+G P A L A + F + +ALP+I +L Sbjct: 131 LLFASGGHLLVIGGLLRTFHFLPLGTSPEWQTAPDVLLTAFGMFFTTAVQIALPMIAVLF 190 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 +L L LL ++APQL+ F + FP + VG++L+ Sbjct: 191 LSDLGLALLTKVAPQLNAFNVMFP--VKVGMTLL 222 >UniRef50_A9BHY5 Flagellar biosynthetic protein fliR n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHY5_PETMO Length = 257 Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 117/215 (54%), Gaps = 8/215 (3%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMIT----FAIAPSLPANDVPVFSFFA 70 +YF+ RV + P S VP +K+ + + I+ F + + P N P+ F Sbjct: 12 VYFFIFARVAGITFFIPFFSTTFVPVHIKVFITLFISYLVLFEVNGTFPINSSPLVIIFY 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L + + G ++G F A + AGE IG+QMG + A DP + + +++ + Sbjct: 72 L---LMNFVFGSSVGLIANILFYAFQFAGETIGIQMGFAMANVFDPVTSDEVSLVSELSF 128 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + ++LLF F G L L S+++D+F+ +P+ L + F+ ++ +F GL L++P Sbjct: 129 LFSMLLFFIFKGPLILYSIIIDSFNKVPVVFT-LAPDGFMVFSQKLFDVFTIGLQLSMPF 187 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 I ++ L +ALG+++R+ PQ+++F++G PL + VG Sbjct: 188 IAFMILLKVALGIVSRLIPQVNVFMVGIPLEILVG 222 >UniRef50_UPI00016952B2 flagellar biosynthesis protein FliR n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016952B2 Length = 259 Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 132/251 (52%), Gaps = 6/251 (2%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67 +WL L R+ A P S R+VP + K+GL+++IT + +L N+ PV Sbjct: 2 EWLQLLPNAMLVFCRITAFFVVVPTFSSRNVPSQFKIGLSLVITLIVFTALGMNN-PVTM 60 Query: 68 FFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 LA+ ++IL+GI LGF F AV+ AG I +QMG A +DP + + P+L Sbjct: 61 DGTYLLAIFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGASAPILG 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE----PLNSNAFLALTKAGSLIFLN 182 M+A LLFL+FNGH L+ +++++ +P+ E + ++ + +F Sbjct: 121 NFKYMIATLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFTTMFGL 180 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 LA P+ L +L LGLL R+APQ +IFV+G P + +G L+ L+P + E Sbjct: 181 AFQLAAPIAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELGSMFEK 240 Query: 243 LFSEIFNLLAD 253 +F+ +F + + Sbjct: 241 VFTTMFAWMKN 251 >UniRef50_B0P9X4 Flagellar biosynthetic protein fliR n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X4_9FIRM Length = 254 Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 2/216 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + ++ L Y +R+ A+I T P+LS R+VP V+ GL ++TF IAP L P+ Sbjct: 3 DSVMAGLPAYMLVFVRMAAMIGTNPLLSRRNVPAAVRAGLTALLTFLIAPGLTV--APMD 60 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + +++ L+G A G+ Q + + AG+++ +Q GLS A DP +++ + V Sbjct: 61 QMTLVLAMLKEFLVGFACGYVFQIFYYMLFFAGDVMDMQFGLSMAKVFDPGTNMQVSVSG 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 +++L L N HL L+ + +F +P G P + + + F L L Sbjct: 121 NFLNILFSLFIFATNSHLLLVRIFATSFQIVPAGFTPFSPHVSGYIADLFIEAFSLALRL 180 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTL 222 ALP I + L ++LG+L ++ PQ+ +FVI F L + Sbjct: 181 ALPFIAVEFVLEVSLGILMKLIPQIHVFVINFQLKV 216 >UniRef50_B8DQ95 Flagellar biosynthetic protein fliR n=7 Tax=Desulfovibrionaceae RepID=B8DQ95_DESVM Length = 264 Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 23/242 (9%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFALWLAVQQI 78 +RV ++ P + P +VK L ++ T A+ P SLP +P F + L ++ Sbjct: 19 MRVSLVLFLLPFFGGEAAPTQVKAALCLVFTLALWPHVSLPGGQMPTHPFSLIVLLAGEL 78 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 ++G+ LG T+ F FA ++T G+++ QMG + T DP + N+ + + + M+A+L FL Sbjct: 79 IMGLMLGMTVHFLFAGIQTGGQVLATQMGFTMITLADPLTGANVSITSHFLYMVAMLSFL 138 Query: 139 TFNGHLWLISLLVDTFHTLPIGG---EPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 +GHL+++ V TF +P GG P+ LAL+ + +F+ + +A P++ L Sbjct: 139 VLDGHLYMLRAFVRTFELVPAGGLLLTPMLVKEVLALSGS---MFVLAVKIAAPVLVSLF 195 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADII 255 + LAL L+ R APQ+++ +IGFPL + VG + L F ++AD I Sbjct: 196 LVELALALMARAAPQMNLLMIGFPLKIAVGFFFIGML---------------FTIMADKI 240 Query: 256 SE 257 E Sbjct: 241 RE 242 >UniRef50_C0GJG4 Flagellar biosynthetic protein fliR n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJG4_9FIRM Length = 253 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAI--APSLPANDVP 64 EQW ++ F +R+ ALI+ P + R +P K+G A + + I A S ++P Sbjct: 4 EQW----SVLFLIFVRLSALIAVLPFFTWRGIPALPKIGFAGVFAYLIFLASSPQEFEIP 59 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 ++ + ++L G+ALGF + FAA R AG+++ +Q GL A+ DP + + Sbjct: 60 EHFYYYVLAVGSEVLFGLALGFLVLLIFAAARIAGQMVDVQAGLMMASVFDPQFGSQVTL 119 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + + AL+ +LT NGH L + + + GG + + + +F+ Sbjct: 120 FGQFYYLFALVFYLTVNGHHMLFMAIARSIELVTPGGVVFSPQLIPNVMQFIFQMFIIAF 179 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 LA+P++ +L+ +LALGLL++ PQL +F++G PL + V + ++ + P +A E +F Sbjct: 180 QLAVPVVAVLIFSDLALGLLSKTVPQLHVFMVGMPLKVGVALFIIYLIFPYLAQVLETVF 239 Query: 245 SEIFNLLADIIS 256 + + DII Sbjct: 240 A---RMQEDIIH 248 >UniRef50_A8U5W1 Flagellar biosynthetic protein fliR n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5W1_9LACT Length = 250 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 110/214 (51%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILI 80 +RV + I +P S + +P K+ L+M IT A ++P + + L ++++L+ Sbjct: 13 IRVTSFIVVSPGFSFKGLPSVAKIALSMGITLAAYSAVPVMEQEAGTVLFAVLVIKEVLL 72 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 GIALGF + F AV AG + Q+G S DP+ +N+ +I L++ +F Sbjct: 73 GIALGFITKLFFTAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGKIYYWLSMCVFYLT 132 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLA 200 N H +I LV +F T+PI L + K +IF +A+P++ + L + Sbjct: 133 NLHHVVIKSLVKSFTTVPISNSNLGDFGVEGMMKLLGIIFEIAFNIAVPMMIVALLTEVI 192 Query: 201 LGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 LGL++R PQ+++ ++G PL + ++ L+P Sbjct: 193 LGLISRSVPQINVLILGMPLKIVASFVMILVLLP 226 >UniRef50_UPI0001BC2FF2 flagellar biosynthetic protein FliR n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2FF2 Length = 258 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 6/238 (2%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E L++ ++ L+R+ + + TAP + + P+R KLGLA I+ + +P + Sbjct: 5 EVALNYWEVFLLILVRIASFVYTAPFFNMANTPQRTKLGLAFFISLIVFTLVPDRTLEYS 64 Query: 67 SF--FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 S +A+ L +++ ++G+ LGF+ + AG II +GLS A+ DP V Sbjct: 65 SILEYAI-LVIKESVVGLLLGFSCMVCVQTITFAGNIIDSNIGLSMASEYDPTLRDQTTV 123 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + LL + + +LIS +VDT+ +PI G +N + + ++ S F+ G Sbjct: 124 SGTLYYYTVFLLLMVSGLYQFLISAIVDTYTIIPINGLSVNPSLYSSVVTLVSDYFIIGF 183 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM---AALMPLIAPF 239 +ALP+ LL +N LG+L ++A QL++F +G + + G+ +M L+P IA F Sbjct: 184 RIALPVFVSLLIVNCVLGILAKVASQLNMFAVGIQIKILAGLVIMFVTVGLLPQIANF 241 >UniRef50_C0QXX3 Flagellar biosynthetic protein fliR n=2 Tax=Brachyspira RepID=C0QXX3_BRAHW Length = 253 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 16/241 (6%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP---SLPANDVPVFSFFALWLAVQ 76 ++R +A++ AP+ S +P +K+ LA + T AI P ++ P F + L L V Sbjct: 1 MVRFVAILMVAPLFSSNVIPNTIKMALAFIATAAIFPLVANVNVQAAPTFVEYFLTL-VN 59 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + LIGI +GF M FAA + +QMG + VDP S + +PVL ++ ++ +LL Sbjct: 60 EALIGILIGFLMSIIFAAYQVMANFFEIQMGFGISETVDPISQVTVPVLGQLQSLVVILL 119 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG---------SLIFLNGLMLA 187 F+ +G W+I L +F +PI E S A + G S +F L LA Sbjct: 120 FIAIDGPSWVIRTLFYSFKAMPILSEA--SKAVFTSSFNGVIDRMIYYMSSLFSVALSLA 177 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP-LIAPFCEHLFSE 246 LP++ L L+L+LGLL + APQ++I ++GFP+ + VG++ L+P L++ F + L + Sbjct: 178 LPIMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIAVGVAAYYILIPVLVSNFMKVLETT 237 Query: 247 I 247 I Sbjct: 238 I 238 >UniRef50_A8F4V7 Flagellar biosynthetic protein fliR n=1 Tax=Thermotoga lettingae TMO RepID=A8F4V7_THELT Length = 258 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 134/257 (52%), Gaps = 20/257 (7%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 + ++L+W+ + + R + + AP ++ VP +VK+ L + +++ + PS+ N+ Sbjct: 5 EFVETKFLAWVLV----VTRNAGMFTIAPFFADWFVPLQVKVLLVVFLSWTVLPSI--NE 58 Query: 63 VPVFSFFALWLAVQQIL--------IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFV 114 V L V QI+ IG+ +GF A+ AGE+ G QMG + ++ Sbjct: 59 V-----IPLHTPVAQIVLSMLSNYVIGLTIGFLALLPVIALSIAGEVFGTQMGFALSSVF 113 Query: 115 DPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTK 174 DP +P+ ++ + L +F+ GHL + +VD+ +++P+ ++ N LT+ Sbjct: 114 DPQRE-EVPIHGELLYVFGLYIFVALKGHLLIYQAVVDSLNSIPVSKTLIDFNFVSVLTE 172 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 S +F + + +P+I + +++LG+++R+ PQ+++F++G PL + VG LM ++P Sbjct: 173 KISEMFSIAMKIGMPMIGFMFVTSISLGIISRLVPQMNVFMVGMPLKILVGFILMVGMIP 232 Query: 235 LIAPFCEHLFSEIFNLL 251 + A + + N L Sbjct: 233 VWADVFSQIAARTINFL 249 >UniRef50_B9KJE3 Flagellar biosynthetic protein fliR n=4 Tax=Rhodobacter sphaeroides RepID=B9KJE3_RHOSK Length = 269 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 118/212 (55%), Gaps = 9/212 (4%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP----VFSFFALW 72 F LR+ A + +P R VP V++ +++T P L ++P + S A+ Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTL---PVLGRVELPPPEALASLAAIP 79 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 L +Q+I +G++ G + F+A AG+ I GL FA +DP++ PV+A+I + Sbjct: 80 LMMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLA 139 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFL-ALTKAGSLIFLNGLMLALPLI 191 +FL +GHL + +L+ ++ +LP G P FL A AG +FL GL + +P++ Sbjct: 140 LTTVFLALDGHLTALDILLRSYESLPP-GAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVV 198 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLT 223 L+ +N+ +G++ R APQL++F GFP+T++ Sbjct: 199 AALILINVTIGIVTRSAPQLNVFSFGFPVTMS 230 >UniRef50_C9XJ38 Flagellar export protein n=7 Tax=Bacteria RepID=C9XJ38_CLODC Length = 604 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 2/188 (1%) Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 A ++ F L+ + + + GI LG+ F ++R AG ++ QMGLS DP S Sbjct: 48 ATNIDNIVLFTLY-GINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSM 106 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++ +M+ A ++F + +GH LI + +F +PIG +++N + Sbjct: 107 TQTTLIDNLMNWTARMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNN-IDYIINIFVQC 165 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 FL G +A+P++ LL + LGL++R PQL++ +IG PL + VGI+L +PLI Sbjct: 166 FLTGFKIAIPIVLCLLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQ 225 Query: 240 CEHLFSEI 247 HL S+I Sbjct: 226 ISHLLSQI 233 >UniRef50_C3XEY7 Flagellar biosynthetic protein fliR n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEY7_9HELI Length = 258 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 135/255 (52%), Gaps = 6/255 (2%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-D 62 +T+ +++L L LLR +++ P + +P V+ LA ++ P + Sbjct: 8 ITNANVMAFLML----LLRFGGILAFFPFFDNQILPVSVRAALAFVLAVVFMPMVTHIIS 63 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 P + F + + +IL+G G +Q F+++ AG++ MGL+ A+ DP S Sbjct: 64 YPSLTAFMIG-GLFEILLGFTCGLVLQIIFSSIVFAGDLASFSMGLTMASAYDPMSGTTK 122 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 P++++++ L++L+ L FN H L+ ++ T + P+GG L+ N TK+ + + L Sbjct: 123 PIVSQVVVFLSILMALHFNFHYLLLDIIARTLNDTPLGGFMLSDNIVAYFTKSFANMILI 182 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 G +A P+I +LL ++ G++ + PQ ++ VIGFP+ + V + ++A ++P I + Sbjct: 183 GFSMAFPIIAVLLLTDIIFGMIMKTHPQFNLLVIGFPVKIGVALVILAIIVPSIMQHFRY 242 Query: 243 LFSEIFNLLADIISE 257 SE +L I+S+ Sbjct: 243 DLSEGMKVLWKILSQ 257 >UniRef50_A4WT32 Flagellar biosynthetic protein fliR n=2 Tax=Rhodobacteraceae RepID=A4WT32_RHOS5 Length = 266 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 7/218 (3%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP----V 65 L L F+ LR+ A + +P R VP V++ +++T P L D+P + Sbjct: 13 LGSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTL---PVLGRADLPGPEAL 69 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 S A+ + +Q+I IG++ G + F+A AG+ I GL FA +DP++ PV+ Sbjct: 70 ASLSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVV 129 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 A+I + +FL +GHL +L+ ++ +LP G A AG +FL GL Sbjct: 130 AQIFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQ 189 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLT 223 + +P++ L+ +N+ +G++ R APQL++F GFP+T++ Sbjct: 190 IMMPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMS 227 >UniRef50_Q2ITJ3 Flagellar biosynthetic protein fliR n=15 Tax=Bradyrhizobiaceae RepID=Q2ITJ3_RHOP2 Length = 283 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 4/215 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAP-SLPANDVPVFSFFALW-LAVQQIL 79 RV A++ P L E ++P R+KL +A+ +T I P A V + S L L +Q+I+ Sbjct: 49 RVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVDMSSLTPLLVLMIQEII 108 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 IGI LG T + +A++ AG +I Q+GL F T VDP ++ + +L + + Sbjct: 109 IGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTILGVTMLFA 168 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNS-NAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 + H +I L D++ GE LNS + TKA + F G+ LA P + L N Sbjct: 169 TDSHHLVIEALSDSYKIFA-PGELLNSGDVAALATKAFAASFKIGMQLAAPFLVFGLVFN 227 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 + LG+L R+ PQ+ ++ +G PL++ +G + AA++ Sbjct: 228 IGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVL 262 >UniRef50_A5I580 Flagellar biosynthetic protein n=19 Tax=Bacteria RepID=A5I580_CLOBH Length = 609 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 2/216 (0%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--SFFALWLAVQQIL 79 R+ S PI + P K+ LA++I + + S+ + S ++ V +IL Sbjct: 16 RLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSIDIRSINTINNSTALIFNIVNEIL 75 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 G LG+ AF R AG ++ LQ+G S T DP+++ N+ L RI+ + ++F Sbjct: 76 AGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIVFFL 135 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 +GH LI LV++F+ + +G LN + F + +A+P++ ++L +L Sbjct: 136 IDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAVPIVFIILITDL 195 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 LGL+ R PQL+I ++G P+ + VG++ +PL Sbjct: 196 TLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPL 231 >UniRef50_C5RFV5 Flagellar biosynthetic protein FlhB n=1 Tax=Clostridium cellulovorans 743B RepID=C5RFV5_CLOCL Length = 607 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 95/176 (53%) Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G+A+GF + F A R AG II +Q+G S T DP ++ L R +++A+++F Sbjct: 77 GLAVGFIINLFFIAARIAGSIIDMQVGFSMVTLFDPTANSTATYLERFFNLIAIMIFFII 136 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLA 200 +GH ++I + T+ + IG L+ + K + G+ +ALP+I ++L ++ Sbjct: 137 DGHHYVIKAFIATYDKVSIGVFFLDQGTLQEILKLFGHFYAIGVKIALPIILVILVADVL 196 Query: 201 LGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIIS 256 +G+L+R PQL+I ++G P+ L +G ++A P + F E+ + L I S Sbjct: 197 MGVLSRTMPQLNIMILGMPVKLLIGFGILAVSAPFFVRLITNSFQEVPHALEKIFS 252 >UniRef50_B0K9T0 Flagellar biosynthetic protein fliR n=11 Tax=Thermoanaerobacterales RepID=B0K9T0_THEP3 Length = 260 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 128/252 (50%), Gaps = 6/252 (2%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + L + ++ +R+L + P ++VP K+GL + ++ D+ + Sbjct: 5 QYLLQNVQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPVDLQIN 64 Query: 67 SFFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + ++ V + ++G+ +G +F+A+ AG++I Q+G +D S +P++ Sbjct: 65 NVLDYFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLM 124 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN-SNAFLALTKAGSLIFLNGL 184 + +L +L+F+ NGH L ++L + +PIG + S LTK S +F+ G Sbjct: 125 GNFIYILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGMSQVLTKMVSDMFILGF 184 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ P+I L +L LG+++R PQL++F+IG P + VGI + ++P+ + +F Sbjct: 185 RISAPIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244 Query: 245 S----EIFNLLA 252 + +IF L+ Sbjct: 245 NGMNADIFRLMK 256 >UniRef50_A3NFU9 Flagellar biosynthesis pathway, component FliR n=10 Tax=pseudomallei group RepID=A3NFU9_BURP6 Length = 258 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 1/215 (0%) Query: 19 PLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQI 78 P R+LA +S AP + E +VP R+++ +A+ + P++ +PVFS A +QI Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDPVAIPVFSARGALAAAEQI 77 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 LIG+ G F A G ++ QMGL+ A DP + V++ M + ++LLF Sbjct: 78 LIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASILLFF 137 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 + HL ++ +L +F P+ G P++ + L + +F +LA PL+ + L Sbjct: 138 AIDAHLVVVQVLYTSFRVWPV-GTPIDLPSLKPLAYQAAWLFSTTTLLAAPLVFATVVLQ 196 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 + L+R P +++F +GF + G+ ++ A++ Sbjct: 197 IGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAML 231 >UniRef50_Q2RZE7 Flagellar biosynthetic protein fliR n=2 Tax=Rhodothermaceae RepID=Q2RZE7_SALRD Length = 258 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 13/243 (5%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIA-------PSLPANDVPVFSFFALWL 73 +RV L+ AP ++++P RV++ ++++ +++A P +DV F L + Sbjct: 17 VRVSGLMLAAPFFQQKTIPVRVRVLASVVLAYSLAGFATGPLPEHVTHDVG----FMLVV 72 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 V+ G+ +GFT + F AV AG I+G QM LS A +P S + L +I+ Sbjct: 73 LVEAG-TGLVMGFTARIIFWAVSFAGTIMGYQMALSLAQTYNPISGTSSNPLGQILSYTF 131 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 LL FL +GH +L+ L +F +P+GG L+ L G F + LA P + + Sbjct: 132 LLAFLLADGHHFLLRALAQSFEVVPLGGAELSGAGPPMLGWMGDF-FRLAVRLAAPFLVI 190 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 L ++ALG+ R+ PQ ++F + P L VGI + + PF LF EI ++ + Sbjct: 191 LFLTDIALGIFARLVPQANLFTLSLPAKLLVGIGIFLVFIQGAVPFFPSLFGEIEQMVHE 250 Query: 254 IIS 256 ++ Sbjct: 251 VLR 253 >UniRef50_Q3A5E4 Flagellar biosynthetic protein fliR n=3 Tax=Deltaproteobacteria RepID=Q3A5E4_PELCD Length = 258 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV---QQI 78 RV +L S PI P R+++ L++ I + P LP +P + L + Q+ Sbjct: 20 RVTSLFSALPIFGSAQTPVRIRIALSVTIALVVYPLLP-ELLPATPLTPIGLGILIAQET 78 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 ++G+ +GF + F AV G IIG QMG + A DP S + ++++ ++ A+LLFL Sbjct: 79 MVGLMIGFIARLVFIAVEFGGSIIGYQMGFAAANVFDPQSQHQVSLISQFQNVFAILLFL 138 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 F+ H + L+ D++ LP G L A L L++ +F + + P++ +LL Sbjct: 139 AFDVHHLFLRLIADSYRLLPAGDAKLGGEAVLFLSRLTGEMFTLAVKFSAPVLIVLLLSG 198 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L LG+++RM QL+ F++ FP+ + V + M L+A + F Sbjct: 199 LVLGIMSRMFQQLNAFMLSFPINIGVSFLSIGLTMQLLAVMLQREFG 245 >UniRef50_C6D2V4 Flagellar biosynthetic protein fliR n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2V4_PAESJ Length = 264 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 139/250 (55%), Gaps = 9/250 (3%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAI--APSLPANDVP 64 +Q + + ++ R+ + AP+ + R VP K+GL ++ + L VP Sbjct: 2 DQIVEYFPIFLLIFCRMTSFFVVAPLFNMRGVPSTFKIGLGFFLSLIVFMTYGLKEQTVP 61 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + + L++ +++LIG+ +G+ + V+TAG ++ +Q+G + + +DP + ++ P+ Sbjct: 62 MDAEYILYI-FREVLIGLLMGYIVYLFMTVVQTAGALMDMQIGFAMSNVIDPMTGVSAPL 120 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLA-----LTKAGSLI 179 L ML +++FL NGH +L++ L+D++ +P+ E L S + L++A Sbjct: 121 LGNFKYMLLIMVFLAVNGHHYLLTGLMDSYKWMPLSNE-LFSRIYDGSITDFLSRAVGNA 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 FL + +A PL+ + ++ LG L + APQ ++FVIG PL L +G+ L+ ++P I+ Sbjct: 180 FLLAMQVAAPLVIAMFLTDVGLGFLAKTAPQYNVFVIGIPLKLLLGLGLLILVLPGISAI 239 Query: 240 CEHLFSEIFN 249 E LF+ +F+ Sbjct: 240 FERLFAIMFD 249 >UniRef50_C0C1N5 Flagellar biosynthetic protein fliR n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1N5_9CLOT Length = 257 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 121/238 (50%), Gaps = 1/238 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALWLAVQQI 78 L+R+ + PIL +++P K GLA+++ + P PA + + L +++ Sbjct: 16 LMRMSGFVFLNPILGRKNIPAVFKTGLALVLALVVYPQAEPAGEEVTSAVVYAVLLLKEF 75 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 +G LGF MQ V AG +I QMGLS AT D + + + I+ + LLLF Sbjct: 76 ALGYLLGFVMQLFDMVVSFAGSVIDFQMGLSMATVYDAQNGTQIALTGNILQIYYLLLFF 135 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 +GHL L+ +L+ + +P L + + A+ + + + + LA P+I + Sbjct: 136 AVDGHLALLKILMTSQDIVPYAALKLGTGSAQAVLQIFTECVVLAVKLAFPIIAFEFLVE 195 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIIS 256 +A GLL R+ PQ+++FV+ L + +G+++M L+ + + + S++ L D++ Sbjct: 196 VATGLLMRIIPQINLFVMSIQLRVIIGLAMMVFLISPAGDYLKGIISQMMQGLQDVLR 253 >UniRef50_Q3V7R2 Flagellar biosynthetic protein fliR n=1 Tax=Bdellovibrio bacteriovorus RepID=Q3V7R2_BDEBA Length = 259 Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP--VFSFFALWLAVQQ 77 LLR+LA + ++ + V VK+ L+++++ + P + +V V S + LAV++ Sbjct: 19 LLRMLAYVISSAVFGSPLVNTPVKILLSLVLSMVLYPVVKVGNVDYLVISNEIIGLAVRE 78 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 +++G+ALGF + F V G+++ + +GLS A +P V+ + +A L+F Sbjct: 79 LIVGLALGFLTRLFFFVVSMTGDLVSMSVGLSAAQLYNPMMGSQGGVIEQFYSAMATLVF 138 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L NGH LIS + ++ +P+ LN F + G + F+ + + P++ +L + Sbjct: 139 LAINGHHMLISAIAQSYELVPVSSLALNFGPFAEIAVFGQVAFVMAIKMCAPVLVAILIV 198 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 NLA+G+L R PQ+++ V P+T+ +G++++ +PL+ Sbjct: 199 NLAMGILGRAVPQINVLVTSMPVTIMLGMAVVFICLPLL 237 >UniRef50_C1TKH9 Flagellar biosynthesis pathway, component FliR n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKH9_9BACT Length = 260 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA---- 70 LY +R L +I TAP+ S P L+ P L +P F Sbjct: 13 LYMLVSIRFLGIIFTAPVFLASSFPIPCLYFLSFFFALITVPQL-GGGLPEVLFSGVLPF 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L A++++L+G ++ F F A++ AG +IG +MGL+ + +DP S ++ ++ Sbjct: 72 LLAALRELLVGASIAFLASAPFYALQIAGRMIGTRMGLAMVSVLDPISQSQDSIIGQLQI 131 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 ++ L FL +NGH+ L+ L+++F LP+G L ++ L L + +F+ A+P Sbjct: 132 LIGLWFFLYWNGHILLVRALMESFRLLPLGEMGLAVSSDLGLAEWLGKLFVMAFKFAIPF 191 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 LL ++ LG L R PQ+++F++G PL + +G+ L+ ++P+ Sbjct: 192 YGALLLADIGLGFLARTVPQMNVFILGLPLKIGLGLFLLMVVLPM 236 >UniRef50_UPI00016C0EEE flagellar biosynthesis protein FliR n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EEE Length = 262 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 111/200 (55%), Gaps = 8/200 (4%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA-----V 75 +R++A++S PI+ E VP V LA+++T + ++P + S+ WL + Sbjct: 19 VRIVAVLSLFPIILETKVPATVVAMLAIILTMIVFFTIPQGTI---SYANTWLGYSILVI 75 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 +++L+G+ LGF + F + G++ Q GLS + F DPA +PVL R + + Sbjct: 76 KEMLVGMVLGFGVLIFFQVLNFTGQLWSNQGGLSMSQFYDPALGAQIPVLGRFLTLGFST 135 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 +F+ G+ + IS L+ TF +P+G + N + + + A ++ F G LA P++ +L Sbjct: 136 IFVLSGGYHYFISALIKTFEYIPLGTQFFNPSISITILDAVAIFFELGFKLATPILGTIL 195 Query: 196 TLNLALGLLNRMAPQLSIFV 215 +++ LG+L R PQ+++FV Sbjct: 196 LIDVGLGILARTVPQMNMFV 215 >UniRef50_P35537 Flagellar biosynthetic protein fliR n=20 Tax=Bacillaceae RepID=FLIR_BACSU Length = 259 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 17/235 (7%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAM---MITFAIAPSLPANDVPVFSFFALWLAVQQ 77 +R+ A T P+ R+VP ++G A +I F+ P+ ++ + LA ++ Sbjct: 16 IRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEIDEHY---MLLAFKE 72 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 L+G+ LG AAV+ AG I QMG S A +DP + P++ + + +ALL Sbjct: 73 ALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYTMALLFM 132 Query: 138 LTFNGHLWLISLLVDTFHTLPI-------GGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 L+ N H L+ + +F + + G E A+ + K+ + +F+ ++ P+ Sbjct: 133 LSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKF---AYF-IAKSFNAMFIIAFQMSAPV 188 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 + L ++LALG++ R PQL++FV+G PL + V ++ M +I ++FS Sbjct: 189 VASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVFS 243 >UniRef50_A5P6J2 Flagellar biosynthetic protein fliR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J2_9SPHN Length = 261 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP--VFSFFALWLAVQQ 77 + R+ A + AP SVP V++ + + +A +P P + S L + Sbjct: 22 MTRIGAALLAAPFFGATSVPMAVRVSITGALAIFVATWMPEVQTPEAILSLEGLLAIAGE 81 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 ++IG+ALGF +Q AFAA A E+IG MG+S A D + ++ L+F Sbjct: 82 VVIGLALGFVLQLAFAAPTIAAELIGGGMGMSMAVSQDAMGGGTTTSFGQYFVIVLTLIF 141 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L+ HL ++L+ +++ P G L + F A+ S +F + +ALP+ +LL + Sbjct: 142 LSTGAHLHWVALVAESYSAFPPGQTWLGAERFAAIAGFASFMFETAIRIALPVTLILLLV 201 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISE 257 + G+L+R AP L++F +G P + G++ + PLI + + L+AD + + Sbjct: 202 QVITGILSRSAPSLNLFALGLPAGVLAGMAALIISAPLI-------YDQFAGLVADALDQ 254 >UniRef50_C4G685 Flagellar biosynthetic protein fliR n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G685_ABIDE Length = 260 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 127/255 (49%), Gaps = 16/255 (6%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 LQ T E L + + + RV A + T+P + S+P+++K+ ++ + + +LP Sbjct: 5 LQFTVEN----LEYFLFIVTRVSAFVFTSPFFNFGSIPRQLKVAFTLIFSALLYLTLPYT 60 Query: 62 DVPV-----FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 +V F+F + + + L G LG+ + G +I +++G + T DP Sbjct: 61 EVRYPGIIGFTF----MVMSEALAGGMLGYFTNIVMTILNFTGRLIDMEIGFAMVTMFDP 116 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 ++ V + + +LL L N H + ++ VD + +PIG +N+N + Sbjct: 117 VFKVDTSVSGNLYNYFTILLLLIGNFHHYFLAAFVDAYKVIPIGRAMVNANTVNVIADFL 176 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIS---LMAALM 233 FL + L LP+ +L +N LG++ ++APQ+++FV+G L L VG++ LM +++ Sbjct: 177 GNYFLIAMRLMLPIYATMLLVNAVLGVMAKVAPQMNMFVVGIQLKLLVGLAVMVLMTSML 236 Query: 234 PLIAPFCEHLFSEIF 248 P +A + ++F Sbjct: 237 PGVADYLTKEMQDVF 251 >UniRef50_C0QA54 Flagellar biosynthetic protein fliR n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QA54_DESAH Length = 262 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 2/217 (0%) Query: 14 NLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFAL 71 L+ L RV ++ PI P VK GLAM+I+ + L + +P + Sbjct: 13 KLFLLVLARVSIVLFMLPIFGTTMFPTMVKAGLAMVISMLLYSVVQLDPDLLPETAMGMG 72 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 V + +IG+ LG ++ F + + AGE+IG QMG S VDP S N+ ++ ++ Sbjct: 73 IFLVSEAMIGLTLGLCVRLFFGSFQLAGEVIGFQMGFSMINVVDPQSGANVSLMEQLAYW 132 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 +ALL+FL NGH ++ LVD+F + G + GS +F+ + + P+I Sbjct: 133 VALLVFLAMNGHHIMLLSLVDSFELVQPGSFVFQQIMVDKVIFLGSQMFILAIKIGAPVI 192 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228 LL ++A GL + +PQ+++ ++ FPL + VG+ L Sbjct: 193 AALLFTSVAFGLTAKFSPQMNVMIVAFPLKIIVGLVL 229 >UniRef50_Q1IR58 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR58_ACIBL Length = 253 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 117/210 (55%), Gaps = 1/210 (0%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIG 81 R+ AL+ AP S ++P RVK GL +++T + PS+ + V + + + + + + IG Sbjct: 17 RIAALVLFAPFFSHAAIPPRVKGGLVVLLTILLYPSVISATV-LSASEVVGVVLHETFIG 75 Query: 82 IALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFN 141 + +G + F AV+ AG+ +G+++GLS + +DP + + PVL+ ++ + LLLFL N Sbjct: 76 MLIGLSSVLVFEAVQFAGQCLGIEVGLSLVSVLDPQTQADSPVLSVLLQTILLLLFLDLN 135 Query: 142 GHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLAL 201 H WL+ L D++ +P G L L + +IF G+ +A P++ L ++ Sbjct: 136 VHHWLLRALADSYRLIPPGAGRLTGVVVQDLFQQAGMIFALGVQIAAPVLAATLLADIVF 195 Query: 202 GLLNRMAPQLSIFVIGFPLTLTVGISLMAA 231 L + +PQ+ + ++G P+ +G++ + A Sbjct: 196 AFLAKASPQMPVLLLGMPVKFVLGLTTLWA 225 >UniRef50_B0MPC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPC9_9FIRM Length = 262 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 4/242 (1%) Query: 6 SEQWLSWLNLYFWPLL---RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-N 61 S+ W LN + LL RV + S PI S + P R++ G + + A S+ Sbjct: 4 SDVWDMILNNFLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGNIK 63 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 P F L+ ++++ +G+ LGF + A +AGE+I Q GLS A +DPA+ ++ Sbjct: 64 YEPTGIFMMLFDMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVS 123 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 MP+ A + + +L F NGHL I L ++ TLPIG ++ AL S + Sbjct: 124 MPLFANVYYYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLT 183 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + LA P+I + + LG+L + P + IF + L + +G++ + + ++ F E Sbjct: 184 LAVKLAAPIIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIE 243 Query: 242 HL 243 L Sbjct: 244 KL 245 >UniRef50_A6LLB0 Flagellar biosynthetic protein fliR n=2 Tax=Thermosipho RepID=A6LLB0_THEM4 Length = 254 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 116/223 (52%), Gaps = 11/223 (4%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP---S 57 + Q+L+W L + R+ + P+LS R +P VK+ L + +++ + P S Sbjct: 3 LFDFVETQFLNWGML----ISRITGMFIITPLLSGRFIPTTVKVFLVLSLSYMMLPQTNS 58 Query: 58 LPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 +P N + +L ++G A+G A AGE++G++ G AT +DP Sbjct: 59 IPLNTPVIHIVLSL---TNNFIVGFAMGLMAFMILGAFSIAGELLGVESGFGLATSMDPT 115 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 P++ + + +LA+ +F++ NGHL + ++D+ P+ + L+ N +T Sbjct: 116 ME-ESPIIGQFVFLLAIFVFISLNGHLVVYEAILDSIKIFPLDLDFLDFNFTKFITTKFV 174 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPL 220 +F L + LP+I + +N+ LG+L+R+ PQ+++F++G PL Sbjct: 175 EMFFIALKIGLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPL 217 >UniRef50_B9Z4S1 Flagellar biosynthetic protein fliR n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z4S1_9NEIS Length = 259 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIA---PSLPANDVPVFSFFALWL 73 +WP R LA ++ AP+ E P RV++G A+ + A +PA D FS + + + Sbjct: 16 WWPFCRFLAALAVAPLSGEGMTPARVRIGAALALAVASLPALRGMPAIDP--FSLYGIAV 73 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 AV+Q +IG+ G Q A + G ++ QMGLS A DP + + V++ ++ +L Sbjct: 74 AVEQAIIGLIFGLAFQLVMAVLSLLGFLVSSQMGLSMAVMNDPGNGNSSDVVSTLLYLLG 133 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 ++F +GHL LI ++ +F P+ G +++ + L + + ++LALP + Sbjct: 134 AMVFFAVDGHLVLIQVVYTSFKAWPV-GSGIDALSLQTLANSVGWVLAAAILLALPAVFA 192 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 + + GL+NR+AP L++F +GFP+ G+ + ++ + L ++ +L Sbjct: 193 TFVVQIGFGLINRVAPALNLFSLGFPVVTLFGLGTLGLIVRFVPEQYLRLSGQLLQMLDG 252 Query: 254 IISE 257 ++ Sbjct: 253 MLGH 256 >UniRef50_B8HEJ0 Flagellar biosynthetic protein fliR n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ0_ARTCA Length = 252 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 111/211 (52%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 WL +R++A + AP + ++P RVK L + + A++ + VP+ + + Sbjct: 9 WLEAMLLASVRMIAFLVVAPPFAHHAIPARVKAMLGLGLGLAVSGRVADGYVPLGTAGFI 68 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 V ++ G+ALGF + FAA+++AG +I L G A DP +N R++ M Sbjct: 69 TAIVLELATGLALGFLVYLVFAAIQSAGSLIDLSSGFQMAQAFDPQMMVNGAQFTRLLQM 128 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 AL L +G+ +I L +F P+ G + A+ +A + +FL + +A PL+ Sbjct: 129 AALALLFASDGYHLVIGGLTGSFAAFPLAGGIDLARPVEAMVQAVTGMFLCAVQIAGPLM 188 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTL 222 +LL ++ LGLL R+AP L+ F +GFPL + Sbjct: 189 VVLLLADVGLGLLTRVAPALNAFALGFPLKI 219 >UniRef50_C6XLQ1 Flagellar biosynthetic protein fliR n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XLQ1_HIRBI Length = 247 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV---FSFFALWLAVQQI 78 R+ +++ AP E SVP + +L A++ T A+ P+L PV S AL L + +I Sbjct: 13 RIGSVLMLAPGWGESSVPAQFRLSAALLATMALVPNLIDQMPPVPELVSQSAL-LIISEI 71 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 LIGI +G + +A++ G+IIG+ GL+ AT DP + ++ M M A++L + Sbjct: 72 LIGIMMGAGARILMSALQVGGQIIGISSGLAMATQFDPTIGSSSAIIGVFMSMTAIVLIM 131 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLN-SNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 H ++ VD++ GEPL +A A S F GL +A P++ + L Sbjct: 132 IAGIHRDMLQAAVDSYQLFKP-GEPLPIGDAAQWELGAMSSAFKLGLQIAAPILVVALVF 190 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 NL++GL+ R+ PQ+ +F I P+ + +G+S+M Sbjct: 191 NLSIGLVARLIPQVQVFFIAMPIQVMLGLSIM 222 >UniRef50_B2TLW3 Flagellar biosynthetic protein FliR/FlhB n=6 Tax=Clostridium RepID=B2TLW3_CLOBB Length = 613 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWLA 74 F+ LR+ + + P +K L+++I+ A+ + + V + ++ + Sbjct: 11 FFIFLRLTSYFVIVNAFFQTGTPHILKGTLSLIISIAVLAGVDYSTVNEINNVYYLIIYG 70 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 + +++ G+ LGF F V+ AG + + G S + +DP SH ++ M+A Sbjct: 71 LNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHSQTTLIGNFSYMIAT 130 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 ++F +GH +I LL+++F +PIG + +A+ + F+ G+ +A+P++ ++ Sbjct: 131 VIFFIVDGHHIVIKLLIESFRIVPIGQTLVYQETMMAVISTITEYFVLGVKIAVPIVLII 190 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE---HLFSEIFNLL 251 + +L LGL++R P + I + G P+ +G+ L+PLI + S++F + Sbjct: 191 VITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSSAIYNLSDVFEHI 250 Query: 252 ADIISELPLI 261 I +PL+ Sbjct: 251 FRAIPAIPLV 260 >UniRef50_Q1NP89 Type III secretion system inner membrane R protein n=2 Tax=Deltaproteobacteria RepID=Q1NP89_9DELT Length = 263 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 129/243 (53%), Gaps = 5/243 (2%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSF-FALWLAVQ 76 ++RV L+ P++ +VP +VK+ L +M + +AP +P A D+P + FA ++ ++ Sbjct: 21 MVRVGPLLFLMPVIGAPNVPTQVKILLVLMTSLVLAPMVPVSAADLPDTALGFAHFVILE 80 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + + I L ++F FAAV TAG+++G+QMG+ A +DP + + + ++ A+LL Sbjct: 81 IVFVAI-LALFVRFVFAAVETAGQVVGVQMGMGMAGVMDPVFGNQISPVGMLWNIAAILL 139 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGG-EPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 FL +GH + +V + + G ++ + + + S +F+ +M+ P+ L Sbjct: 140 FLAIDGHHLFFAAMVQGYQWVGPGQLAAVSQLTYEGMMEGASQMFVLAIMIMAPVSVALF 199 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADII 255 ++ +G++ + PQ+ I ++G P+ + +GI M +AP F + LL I Sbjct: 200 FSHVGMGVIAKTVPQIPILIVGMPMNIAIGIVFAGLAMGYLAPLLIARFEMLQRLLPGIG 259 Query: 256 SEL 258 + L Sbjct: 260 AGL 262 >UniRef50_C6N719 Putative flagellar biosynthesis pathway, component FliR n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N719_9GAMM Length = 249 Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 12/252 (4%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-----ANDVP 64 L WL F+ +R+ ++ PI + R +P +L L ++ +A +P +N+ Sbjct: 5 LPWLTSLFFITIRLGTVLLFTPIQAIRQLPIHARLILIFTLSMLLANYVPQKSELSNNAI 64 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 +F + + G+ L ++ AFA + AG++I + G + +P+ H P+ Sbjct: 65 LFG------GLAEFANGLILATSLYAAFAIFQIAGQLIDSETGYNATAVFNPSEHSQEPL 118 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + ++ MLA+L F + +GH WL L +F +P G L + F + K S +F Sbjct: 119 TSHLLSMLAVLFFFSLDGHQWLFKGLAYSFIIIPPGTLSLFA-GFTPVIKQFSFMFSMAF 177 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 M+A P+I LL L+L L+ R PQ+S + + P+ + G+ L+ ++ I P +F Sbjct: 178 MIASPIIIALLALDLCGALITRNMPQVSTYFLTLPIKILFGLFLLFMMLNYINPLTTTVF 237 Query: 245 SEIFNLLADIIS 256 S+ F+ +I+S Sbjct: 238 SQCFHTWQEIMS 249 >UniRef50_A3ZNZ1 Probable flagellar biosynthetic protein fliR n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNZ1_9PLAN Length = 267 Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 2/217 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E L L ++ L RV +++TAP+ P +VK LA+ I+ I P Sbjct: 8 EPTLHQLFIFVTVLTRVSGMLATAPMFGSNYAPAKVKAFLAVTISMMITGLFWGEKFPQP 67 Query: 67 SFFALWLAV--QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + +L V ++ IGI+ G ++ FA V+ G+++G GLS A +PA ++P+ Sbjct: 68 DHWMSYLVVLGGELFIGISFGLGVRILFAGVQITGQMLGQIGGLSVADAFNPAFDESVPM 127 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 LA + DM+ + +F GH ++I L+ TF +P G + L S+ F+ G+ Sbjct: 128 LAVLFDMVVVAMFFCLGGHRFMIGALLSTFADVPPGVGLASPEVVHVLVSTLSISFMLGV 187 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLT 221 A P LL L +GL++R PQL++ +GF L Sbjct: 188 QAAAPGTVALLIGVLVMGLISRTLPQLNLIAVGFSLN 224 >UniRef50_B4RGX9 Flagellar biosynthetic protein fliR n=3 Tax=Caulobacteraceae RepID=B4RGX9_PHEZH Length = 253 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV-FSFFALWLAV-QQIL 79 R+ A+I P L E +P R++L A+ + + P L A P+ S AL V +++L Sbjct: 19 RLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGALAGEVIRELL 78 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 IG+ +G ++ ++ TAGEI+ L LSFA +P P L+ + ML ++L LT Sbjct: 79 IGLMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFLGMLGIVLILT 138 Query: 140 FNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 + H ++ LV ++ P G E P+ LA+ + S F GL LA P++ L L +N Sbjct: 139 TDLHHMFLAALVRSYAIFPFGREVPVGDAGQLAI-QTTSRAFALGLQLAAPVVVLSLIVN 197 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 +A+GL+ R+ P +F I PL + +G+S+ A + +I + E+ + Sbjct: 198 VAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWVDRYRELIGM 249 >UniRef50_D1B6A7 Flagellar biosynthetic protein fliR n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6A7_THEAS Length = 259 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 122/221 (55%), Gaps = 7/221 (3%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW-----LAV 75 +RVL L+ ++P+ S P V++ LA+M++ + PS+ VP+ A W AV Sbjct: 18 IRVLGLLMSSPVFMLPSWPIPVRMWLALMLSLLMVPSVDPQ-VPMV-LLATWTGMAIFAV 75 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 ++ L+G +G A++ +G + G QMGL+ AT DP N+ +L ++ +L + Sbjct: 76 REFLVGAMVGLLSGLPLYALQLSGYLEGSQMGLAMATLFDPTQEGNVALLGQVKYLLGIW 135 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L +NGHL LI + +F +P+G L+ + + +FL + +LP++ LL Sbjct: 136 FLLHWNGHLVLIEAINRSFSLIPLGKGVLDLPPGQPFGRWITDLFLLAIRFSLPIMGALL 195 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 ++ LG + R PQ+++F++G PL + +G+ L+ A++P + Sbjct: 196 LADVGLGFVARTVPQINVFILGIPLKIGLGLILLMAVIPFV 236 >UniRef50_O67773 Flagellar biosynthetic protein fliR n=1 Tax=Aquifex aeolicus RepID=FLIR_AQUAE Length = 258 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 11/227 (4%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M +VTSE++L L L ++ R+++ + T P +P ++L LA ++FA+ + Sbjct: 1 MDKVTSEEFLITLLLSYF---RIVSFLFTFPFYGSFLIPNTIRLYLAFALSFAVLSFINI 57 Query: 61 NDVPVFSFFA-LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V V +F L A+ ++L G + G ++ F A+ AGE+I L GL F P Sbjct: 58 TPVKVNTFVEFLVYALNELLFGFSAGLILRLLFDALIIAGELIALHTGLGFLQMFIPGMT 117 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP---LNSNAFLALTKAG 176 M + + + L+FL+ G ++I L ++F LP+G LN FL Sbjct: 118 -QMSLFSGFFTLYGTLIFLSLGGGEFIILGLAESFKRLPVGSFNIFYLNPEVFLNFFYES 176 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLT 223 F G+ +A+PLI L LNL L ++NR PQ+++F++G PL ++ Sbjct: 177 ---FRLGVKIAMPLILTALILNLVLAVVNRFIPQMNVFMVGLPLQVS 220 >UniRef50_A0RQU4 Flagellar biosynthetic protein fliR n=23 Tax=Campylobacter RepID=A0RQU4_CAMFF Length = 257 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 4/237 (1%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV 75 +F L+R AL+ P + +P +K L+ M + P L V + + +L + Sbjct: 15 FFLLLVRTGALMVFFPFFNHMQIPVIIKAVLSFMFAIFLFP-LAHAPVGLENLSVEYLIL 73 Query: 76 Q---QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + +++ G+ G + F A++ AG I + MG S A+ +DP S +NMP+++ +++ + Sbjct: 74 ETFSELMFGMCAGVLLMLVFGALQLAGGQISMIMGFSMASVIDPQSGVNMPLISNMLNFI 133 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 LL FL F+GH ++ + + +P+GG + N K +FL G +++ P++ Sbjct: 134 VLLAFLLFDGHHIVLQFIAYSLQFIPLGGFYPDENIVKYTAKGVINLFLFGFIISFPILA 193 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L L +L G+L + PQ ++ V+GFP+ + + ++ A++ + L ++ N Sbjct: 194 LSLLADLIFGMLMKTMPQFNLLVVGFPIKIAIAFVVIMAIISAMVKLFTSLMMQVLN 250 >UniRef50_D1AZH9 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZH9_SULD5 Length = 257 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 114/214 (53%), Gaps = 4/214 (1%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALWL 73 L+F R+ + + P S ++P +K + + + P L P + P + L L Sbjct: 15 LFFLLFARLSGVFAFFPFFSHANIPLSIKTSITFFMVVFLFPLLSPLHVTP--TLLNLTL 72 Query: 74 A-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 A V ++LIG G + A + ++ AG I MG + A+ VDP + ++PVL++I ++ Sbjct: 73 AIVSELLIGFIAGLFLTIALSILQMAGMQISFVMGFTMASVVDPQTSTSIPVLSQIFSLI 132 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 L++ L FNGH ++ +VD+ LP+G + + KA + +F+ G +L+ P++ Sbjct: 133 GLMIVLAFNGHHQMLLFIVDSLSLLPLGTFYPEMSVVGYILKATTGMFVYGFILSFPVLA 192 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 L +++ G+L + PQ ++ V+GFP+ + V + Sbjct: 193 FSLLMDVVFGMLMKTMPQFNLLVVGFPIRIAVSL 226 >UniRef50_B0SDH1 Flagellar biosynthetic protein fliR n=6 Tax=Leptospira RepID=B0SDH1_LEPBA Length = 260 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 126/239 (52%), Gaps = 12/239 (5%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP-- 64 E ++ + + L+R+L L AP S S+ +++ + M++ + P + AN +P Sbjct: 2 EAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVV-ANYMPPV 60 Query: 65 ---VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + +F + L+ ++LIG+ +GF + F+A + AGE Q+G + +DP + + Sbjct: 61 PGHMINFGIMILS--EMLIGVFIGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNS 118 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPI---GGEPLNSNAFLALTKAGSL 178 +P + + +++A LFL H +LI L +F + I G+ +NS + + A Sbjct: 119 LPAIGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFTGK-VNSGLYRLVEDAIGA 177 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 +F+ +ALP++ +L ++LA GL+ + A Q+++ + FPL + +G + A + IA Sbjct: 178 MFVVSFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIA 236 >UniRef50_B1ZR30 Type III secretion system inner membrane R protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR30_OPITP Length = 249 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 129/240 (53%), Gaps = 11/240 (4%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 ++W+ ++ LR L +I P+++ R +P +LG+ + I +A +P + VP + Sbjct: 7 VTWMMVF----LRTLGVILQLPLVAGRPIPVMARLGICVCIASLLAGVVPESSVPATLWG 62 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFV---DPASHLNMPVLA 126 L +IL+G+ALGF ++ AFAAV AG I+ ++G++ + +PA+ P+ A Sbjct: 63 LLAATAGEILVGLALGFMVRLAFAAVEMAGRILSSEIGITMGGGMGVPEPATE---PMTA 119 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 ++ A++LF F GHL ++S L +F P G L +A L A S + G+ + Sbjct: 120 -LISTFAVVLFFAFGGHLMMLSGLARSFVLAPAGQPMLAPSASDLLINATSHLIEVGVRI 178 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 A P I + + L +L R+ P++++F++ F + L G +L+A+ LIA + F + Sbjct: 179 AAPFIAMNFLVLLTFSVLGRVLPKMNVFIVSFSMRLIAGFTLLASGGTLIARYLYLEFDD 238 >UniRef50_Q3V824 Flagellar biosynthetic protein fliR n=4 Tax=Bacillaceae RepID=Q3V824_BACSK Length = 260 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP-- 64 ++WL+ + +RV + P+ + R+VP +KLGL+ + +A SL DVP Sbjct: 2 DEWLTLYPAFLLIFIRVSSFFVVLPLFNHRTVPAPLKLGLSAFLAATLAVSL---DVPEL 58 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 L LA+++ IGIA G AV+ AG +I +G A VDP + P+ Sbjct: 59 ALDLPFLLLALKEFAIGIAAGLMASMILYAVQVAGGVIDFHLGFMLANVVDPQTGAQSPL 118 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLA-LTKAGSLIFL 181 + + A+L L +GH L+ ++ ++ +P+ P S + +T+ ++F Sbjct: 119 TGSYLYLFAMLYLLIIDGHHLLLDGVIYSYQFVPLDQLVLPFGSGHVMEHVTQVMVMLFA 178 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 + +A+P+ L +++ALG+++R PQ+++FV+G P+ + G Sbjct: 179 MAVSMAMPVAGALFLVDVALGIISRTVPQMNVFVVGIPIKMLAG 222 >UniRef50_C9R9Y0 Type III secretion system inner membrane R protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9Y0_AMMDK Length = 255 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 6/204 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ---QI 78 R+L P L+ +P +LG+AM ++ + P LP D P FS A A+ + Sbjct: 18 RLLGFTLAFPPLALPGLPVLWRLGVAMSLSLFVTPLLPP-DRP-FSGGAWEWALTWAGEF 75 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 +G+ +GF F A+R AG+++GLQMG A + + +LA +L +LF Sbjct: 76 TLGLGMGFVAGLVFQALRVAGQLMGLQMGFGMAELLT-LGGVPETMLAEFFFLLGTVLFF 134 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 T + + +LI LV ++ LP+GG + A K + L LA P++ + + ++ Sbjct: 135 TTDAYQYLIEALVRSYEVLPLGGAAVKGGAIWLTVKLVGGMLATALQLAAPVLAVTVLID 194 Query: 199 LALGLLNRMAPQLSIFVIGFPLTL 222 +LGLL RM PQ+++F++GFPL + Sbjct: 195 ASLGLLVRMVPQINVFMLGFPLKI 218 >UniRef50_C4ZAM9 Flagellar biosynthetic protein fliR n=2 Tax=Clostridiales RepID=C4ZAM9_EUBR3 Length = 259 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF-----FALWLA 74 L+R+ + + AP + +VP RVK GL+ + + + + P S+ FA+ L Sbjct: 18 LVRIASFVYIAPFFGDNAVPARVKTGLSAFVALFMYNII---ERPQLSYVSAVGFAV-LV 73 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 V++ + G+ +GF + V AG +I + +GLS AT +P+ + V + L Sbjct: 74 VKEGITGLLIGFAANICNSIVIFAGNLIDMDIGLSMATEFNPSMNSETTVTGNFYYYVVL 133 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLN-SNAFLALTKAGSLIFLNGLMLALPLITL 193 +L L + H +LI + D+F +P+GG N +TK +F+ G + LP+ Sbjct: 134 VLLLVSDMHTYLIRAVCDSFSVVPLGGAQFQFDNMLSTMTKYMGDMFVIGFRIFLPVFAC 193 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 ++ +N LG++ ++APQ+++F +G L + G ++ ++ LI + +EI ++ Sbjct: 194 MMIMNCILGIMAKVAPQMNMFSVGIQLKIIAGFIVLFLIVYLIPNIANFIITEIKTMVVS 253 Query: 254 IISEL 258 II + Sbjct: 254 IIDGM 258 >UniRef50_Q45975 Flagellar biosynthetic protein fliR n=3 Tax=Caulobacter RepID=FLIR_CAUCR Length = 251 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA-LWLAV-QQIL 79 RV A++ T P + ++++P R++L A+++ +AP + P+ S L AV ++L Sbjct: 19 RVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVGPIPSTLGGLGGAVIHEVL 78 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 IG+ +G ++ ++ TAGEII +Q LSFA +P+ + +A + ML L L + Sbjct: 79 IGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFLSMLGLTLVMA 138 Query: 140 FNGHLWLISLLVDTFHTLP-IGGEPLNSNAFLAL-TKAGSLIFLNGLMLALPLITLLLTL 197 + H I+ +V ++ P P+N A LA+ T A S F G+ LA P+I L Sbjct: 139 TDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQS--FSLGVQLAAPVIVFSLVF 196 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTL 222 NLA GL+ R+ P IF + PL++ Sbjct: 197 NLATGLVGRIMPAFQIFFVASPLSV 221 >UniRef50_B8FK33 Flagellar biosynthetic protein fliR n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK33_DESAA Length = 260 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 3/227 (1%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALWLAVQQ 77 L+RV ++ P+ +P VK GL++++T + P + N P + + + Sbjct: 18 LIRVSVILFMFPVFGSNLIPLPVKAGLSLLLTLYLTPIVQVNPQSFPDTVLEGGVMILCE 77 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 ++G+ L + F FAAV+ G+++G QMG + A DP S M +L+ + L+LF Sbjct: 78 AVMGLTLSLIVSFFFAAVQVGGQLVGYQMGFAIANVFDPVSGGQMSILSNFAFWVTLVLF 137 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 + NGH I + +F +P+G + ++ K + +F L +A P I LL + Sbjct: 138 IVLNGHHIFIRAVAHSFEIVPVGHLYAGRSIMPSMIKLSTDMFTLSLQIAGPAIVALLLV 197 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI-APFCEHL 243 N A G++ ++ PQ++I ++ FP+ + +G+ + LI A HL Sbjct: 198 NAAFGIVAKVVPQINILIVAFPINVGMGLFFFGVSLQLILASMKAHL 244 >UniRef50_A8RW99 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW99_9CLOT Length = 259 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 6/224 (2%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSF 68 + +++ L R+ L+ P+ S R VP V+ GL + ++ IAP + A V FS Sbjct: 7 EYFDIFLLVLARMGGLVFINPVFSRRGVPPMVRTGLVLALSLLIAPGVRSGAGQVMAFST 66 Query: 69 FALWLA-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 F + + ++++++G+ +G F + AG+ + GL+ +DPA + +L + Sbjct: 67 FDMVESLIREVILGLVIGCVFHIFFYMLYVAGDFLDTVFGLAMGKVMDPAGGVQTSILGQ 126 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFL--ALTKAGSLIFLNGLM 185 +++ L F HL ++ L ++ +P+G + L +T GS +FL + Sbjct: 127 FVNVFFYLYFFATGCHLTMVRLFAYSYQVVPVGAGAILGGRILWYIITLFGS-VFLMVIK 185 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 L LP + L + +G+L ++ PQ+ +FVI + +GI LM Sbjct: 186 LVLPFVAAEFILEMTMGVLMKLIPQIHVFVINIQCKILLGIMLM 229 >UniRef50_C2KYZ8 Possible flagellar biosynthesis protein FliR n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ8_9FIRM Length = 250 Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 17/227 (7%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFA 70 L L+ + ++R+ I+ P+ P+R + L M++ + + +P Sbjct: 2 LVLFSFIVMRMTGAIAFNPVFGRTDYPRRARAALIFMLSAICYVHIGGELHHMPGSILEY 61 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 ++ ++++ +G LGF M+ AF +R A I+ MGL+ A DP S V + Sbjct: 62 GFMLLKELFVGFCLGFAMELAFTCLRFATSIMDFSMGLNMAQVFDPQSGSQATVSTGLFY 121 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL--------NSNAFLALTKAGSLIFLN 182 +LLF + +GHL + LL T T P GG + + F+A K Sbjct: 122 GFMMLLFFSMDGHLRFLELLFQTIDTHPFGGISIKLLLMPKLMLSLFVASMKM------- 174 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 GL LA P++ L L +ALG+L R+ PQ++IF + F L + +G S++ Sbjct: 175 GLELAFPIMGLELMSEIALGILMRIIPQINIFAVNFQLKIILGFSML 221 >UniRef50_A7HWA0 Flagellar biosynthetic protein fliR n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWA0_PARL1 Length = 253 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 14/206 (6%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAP-------SLPANDVPVFSFFALWLA 74 R+ A+I P L E S+P +V+L LA++++F + P ++PA VP F + Sbjct: 20 RLAAMIMLMPALGEASIPAQVRLMLALLLSFVMMPLVAGSYGAIPAT-VPGLVF----IV 74 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 +I +G+ +G + +A+ AG II QM LSFA VDP+ ++A + +L + Sbjct: 75 CSEIAVGLFIGTAARLIMSALHVAGNIIAAQMSLSFAMNVDPSQGQQGVLIANFLSLLGV 134 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT-KAGSLIFLNGLMLALPLITL 193 L N LI+ + D++ GEP+ FLA+ K S F GL LA P + Sbjct: 135 TLIFATNLDHVLIAAMRDSYELFK-PGEPIPVGDFLAMAVKMVSGSFRLGLQLAAPFLVF 193 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFP 219 L L +G+L+R+ PQ+ IF I P Sbjct: 194 GLIFYLGIGILSRLMPQIQIFFIAMP 219 >UniRef50_D2S978 Flagellar biosynthetic protein FliR n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S978_9ACTO Length = 254 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 8/213 (3%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFA----IAPSLPANDVPVFSFFALWLAVQQ 77 R + AP + RS+P VK LA+ ++ A IAP LP P F + AV + Sbjct: 19 RATGFVLLAPPFNSRSIPAPVKGALALALSVALMTRIAPELPD---PTTGFLVVG-AVTE 74 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 + IG ALGF + FAAV+ AG++I L G S DP S + R+ +LA L Sbjct: 75 VAIGAALGFVVHVLFAAVQYAGDLIDLTGGFSLQPAYDPLSMTTSSSVGRLHYLLATTLL 134 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 T GHL ++ ++ LP+GG L A S++FL L +A P++ +LL Sbjct: 135 FTSGGHLLVVRGFATSYEGLPVGGSVPTEQLAQVLITALSMMFLAALQIAGPMVAVLLLA 194 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 ++AL LL+R AP L+IF GFP+ + + ++L+ Sbjct: 195 DVALALLSRAAPALNIFSFGFPVKIMLTMALLG 227 >UniRef50_C6WJP4 Type III secretion system inner membrane R protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP4_ACTMD Length = 256 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 2/238 (0%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV-QQILI 80 R A + P + +++P VK LA+ + + P L A VP ++L +A +Q+++ Sbjct: 19 RSAAWLMVCPPFNGKAIPMTVKGMLAVGLALPVVPRLSAGSVPSLDTWSLVIAAGEQVVV 78 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS-HLNMPVLARIMDMLALLLFLT 139 G LGF FA V+ AG+++ + G S A DP S N VL R +LA L Sbjct: 79 GAGLGFLTAVIFAGVQAAGDLLDVFGGFSLAFAFDPMSFSGNNAVLGRFYGLLATTLLFV 138 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 H +I ++ +P+ G LT + L+ +A PLI +L ++ Sbjct: 139 TGSHQVIIRGFTLSYDAIPLDGGLSLGRLGTLLTTGLGQLLLSAAQIAGPLIVVLFCADV 198 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISE 257 LGLLNR+AP L+ F IGFP + + + L+ MP++ E++ + + + I Sbjct: 199 GLGLLNRIAPALNPFQIGFPAKIGLTLVLVGLTMPMLPMSVENIAKHAASAVMEAIGR 256 >UniRef50_Q1Q6S6 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6S6_9BACT Length = 262 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 120/224 (53%), Gaps = 14/224 (6%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-------PANDVPVFSFFALWLA 74 RV ++ AP+ S +P +++ +A+++ F + P+L P+ +P F L + Sbjct: 22 RVGGILLFAPVFSNTHIPMLLRIAIALILAFILYPNLDKNLHELPSELIP----FGL-IV 76 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS--HLNMPVLARIMDML 132 V++I IG +GF FAA AG ++ QMGL A DP+S P ++ +++ Sbjct: 77 VKEIAIGAIVGFAASILFAAFSMAGYLLSNQMGLDMAVIADPSSLSGDEEPTVSVFYNLI 136 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A+LL L +GH + I+ + +FH +PIG + + +F+ G+ +++P Sbjct: 137 AILLLLAIDGHHYFINAIAQSFHAVPIGSFDYTTAILTKILSLFRTLFVIGIKISIPAFV 196 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 +L+ +A+ L+ ++A +++IFVI +P+ + +G ++ PL+ Sbjct: 197 VLMLSVVAMALMAKVAKEINIFVIAYPIKIIIGFIVVFVSFPLM 240 >UniRef50_C5CXN3 Type III secretion system inner membrane R protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CXN3_VARPS Length = 239 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 7/200 (3%) Query: 31 PILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA----LWLAVQQILIGIALGF 86 PI +P V++ L + ++ A+A L A PV ++ L+ A+ ++ +G LG Sbjct: 3 PIFYAVPLPASVRMLLVLGLSIALAFGLSA---PVGAWMGWSELLFSALAELALGATLGL 59 Query: 87 TMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWL 146 + AF A AG+++ +Q+G A +DP + +PVL + LA+L+F NGH L Sbjct: 60 GILLAFGAFSIAGQLLDVQLGFGIAQVIDPVTQRPIPVLTSAFNYLAVLVFFLLNGHHAL 119 Query: 147 ISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNR 206 + + + P+G +A + K + +F G LA P++ +L + ALG++ R Sbjct: 120 LRGISYSLERFPVGASWSIGHAVAPVLKQAAGLFSLGFALAAPVVFCILLVEFALGVVGR 179 Query: 207 MAPQLSIFVIGFPLTLTVGI 226 PQ+++F +G P+ + VG+ Sbjct: 180 NLPQMNMFTMGIPVKILVGL 199 >UniRef50_D2C589 Flagellar biosynthetic protein fliR n=6 Tax=Thermotogaceae RepID=D2C589_THENR Length = 256 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 124/257 (48%), Gaps = 14/257 (5%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMIT----FAIAPSLPAN 61 E++L+W+ ++ R AP SER+ P V++ L + + F + S+P N Sbjct: 9 EEKFLAWMCIF----TRFTGFFLIAPFFSERAFPVEVRVFLGLFTSWLMLFTVDVSIPLN 64 Query: 62 DVPVFSF-FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 PV SF L+ L+G +GF + A AG I G Q+G + Sbjct: 65 T-PVLSFTLNLFF---NFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVLAFGEEE 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P ++ +AL +F+ G + + L D+ P+ + F + + S F Sbjct: 121 TNPT-GELVYFIALTVFVLIKGPVLVFEGLKDSIDVFPVNLTGVADGFFSYVVERSSDFF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L + P+I +L +++ LG+++R+ PQ+++F++G PL + +G+ L+ ++P+ A Sbjct: 180 VLILKIGAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWAEVA 239 Query: 241 EHLFSEIFNLLADIISE 257 + + + +N + +++ + Sbjct: 240 QKISALSWNAIQELLGK 256 >UniRef50_A6M184 Flagellar biosynthetic protein FlhB n=4 Tax=Bacteria RepID=A6M184_CLOB8 Length = 613 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 126/257 (49%), Gaps = 5/257 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--S 67 +S+ F LR+ + I P+ ++ +++++F I + + V S Sbjct: 4 ISYFLALFLIFLRITSYFMAVQIFFPTGTPQIMQGVFSLILSFGIVAGIDHSTVSAVNSS 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + ++ A+ +I+ G+ LG+ F V+ AGE + + G S + +DP + +L Sbjct: 64 YMLVFYAISEIMSGLILGYITNLIFQVVKLAGEWMDIHAGFSMVSVLDPTTQTTSTLLGN 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + ++L F +GH +I++LV++ +PIG + + + K F G+ +A Sbjct: 124 LSYFISLAFFFIVDGHHVVINMLVESTKIIPIGKTIVYQETLMEVMKTIFDYFTLGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE---HLF 244 +P++ +++ ++ LGL++R P + I ++G P+ +G+ L+PL+ + Sbjct: 184 IPIVLIIVITDVCLGLISRTVPTIPIMILGMPIKNLLGLITYIILLPLMLKLIGTAIYNL 243 Query: 245 SEIFNLLADIISELPLI 261 IF + ++IS +PL+ Sbjct: 244 PSIFREIVNLISAIPLV 260 >UniRef50_A4XIZ3 Flagellar biosynthetic protein fliR n=2 Tax=Clostridia RepID=A4XIZ3_CALS8 Length = 260 Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 126/236 (53%), Gaps = 17/236 (7%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMIT------FAIAPSLPAND 62 +L+ ++F L R+ + +PI R++P K+GLA ++ + ++P N Sbjct: 8 FLNGSYIFFLVLARMSGIFIASPIFGRRNIPAYFKIGLAFFLSIIVVLLYHFEYTVPQNL 67 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + +++ ++ ++GI +GF F+ + AG+II +G A +DP S + + Sbjct: 68 LEF-----IFVVTKEFIVGIIIGFISYMIFSTILLAGQIIDNAIGFGIANVIDPMSEIQV 122 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE---PLNSNAFLALTKAGSLI 179 P+L + + L++F + H LI +V ++ +P+G P S F+ + Sbjct: 123 PLLGNFLYLYMLVIFFATDAHHTLIRAVVYSYKVVPLGYSNILPKLSQKFITFFIE---L 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 F+ G+ ++LP++ +L +++ LG+L+R PQ+++F++G P+ + +G ++ ++P+ Sbjct: 180 FVIGIEISLPILMSMLIVDIILGILSRAVPQMNVFMVGIPIKIAIGFVVLVIVLPI 235 >UniRef50_B9L8B4 Flagellar biosynthetic protein fliR n=1 Tax=Nautilia profundicola AmH RepID=B9L8B4_NAUPA Length = 255 Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 4/222 (1%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQIL 79 +R+ + ++ P + ++P VK A ++ + P P + L + ++ Sbjct: 19 FVRISSFLAFMPFFNYTAIPMNVKAAFAFWLSILLFPITPKFAYEINIATVLLSVLNEVA 78 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G +Q F ++ AGE I MG + A +DP + + ++++ +A+++FL+ Sbjct: 79 FAFFVGMALQMVFDVLKYAGEQISFVMGFTLANVMDPNAGVQTTIISQFFTWVAVMMFLS 138 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 F G I L TF LP G N + S FL G+ +A P+I + L ++ Sbjct: 139 FGGDHLEIMFLDKTFAMLPFGEFFSYHNVYEYFITYMSKYFLLGIAMAFPIIAISLMGDI 198 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVG----ISLMAALMPLIA 237 G++ + PQ ++ V+GFP+ +T+ I+++A+LM L + Sbjct: 199 IFGMIMKTMPQFNLLVVGFPIKITISFMVLIAIIASLMQLFS 240 >UniRef50_C6HWM1 Flagellar biosynthesis protein FliR n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWM1_9BACT Length = 269 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 9/256 (3%) Query: 9 WLSWLNLYFW-PLLRVLALISTA------PILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +LS +L W P L VL L T+ P + R+VP +VK +A+ ++ + P + Sbjct: 5 FLSLFSLSRWDPELFVLILARTSGVLIAMPAFNSRAVPTKVKALVAVALSALLFPVVGGR 64 Query: 62 -DVPVFSFFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + + AL ++ + ++G+++GF FAAV AG++ G+Q G ++P Sbjct: 65 VNFHETGYDALLFSILTEFVVGVSMGFAAYLVFAAVALAGQLAGVQAGFGIVDVINPLGV 124 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P+L +A L+FL N ++ L ++ + +GG + + F + + Sbjct: 125 AEVPLLGNFQTQIAFLIFLATNAQYAMLWALARSYDVVGVGGASFSGSYFAGIAHLFGRM 184 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 GL+LA P I + LNL LG L++M PQ+++ +G P+ + G+ L +P + Sbjct: 185 MSLGLVLASPFIVGGVILNLVLGFLSKMMPQMNLISLGLPVMVLGGLVLTILGLPFLGTV 244 Query: 240 CEHLFSEIFNLLADII 255 I L D++ Sbjct: 245 LGEAMGRISPTLDDLL 260 >UniRef50_Q7UXG3 Probable flagellar biosynthetic protein fliR n=1 Tax=Rhodopirellula baltica RepID=Q7UXG3_RHOBA Length = 264 Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 6/190 (3%) Query: 37 SVPKRVKLGLAMMITFAIAPSLPAN-DVP----VFSFFALWLAV-QQILIGIALGFTMQF 90 VPKR++ LA+++T + P+L A D P + + L +A+ ++ LIG+ +G T Q Sbjct: 35 GVPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELAVAIGREALIGMLIGATTQM 94 Query: 91 AFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLL 150 ++ AGE I G+ +DP + +MP LAR++ ML + L H ++ LL Sbjct: 95 VITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGMLVTTVMLITGAHRVVLRLL 154 Query: 151 VDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQ 210 V++F +P G + A+ +G+ +A P+I LL NL GL++R PQ Sbjct: 155 VESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVIAALLLANLVTGLISRTLPQ 214 Query: 211 LSIFVIGFPL 220 +++ IG + Sbjct: 215 INVLAIGLSI 224 >UniRef50_A3WGR2 Flagellar protein FliR n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR2_9SPHN Length = 264 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 13/223 (5%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP-VFSFFALWLAVQQIL 79 +R A + AP++ V + + +A+++ ++ +P +P + SF A+ VQ+++ Sbjct: 23 IRCGAALLAAPMVGGMVVAPQFRALIAIVLAVFVSTWIPLPPLPEMMSFAAVLAVVQEVV 82 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 IG ALGF +Q AFA A E I MGL+ AT +DPAS L ++ LLF Sbjct: 83 IGAALGFVLQVAFAVPLIAAEQISGTMGLAIATSIDPASGAQSGALGTYFGLILTLLFYA 142 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP------LITL 193 GHL LL++++ LP G ++AF A T A ++ G +A ++ + Sbjct: 143 IGGHLLWFELLIESYRILPAG-----THAF-AETSARDIVAFAGYGIATAAAIGLPVVLV 196 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 LL + + G ++R AP L++F +G P + GI+ + +MP++ Sbjct: 197 LLCVQVVTGTISRSAPALNLFALGLPAGVLAGIAALIVVMPIM 239 >UniRef50_C4XT80 Flagellar biosynthetic protein fliR n=2 Tax=Desulfovibrio RepID=C4XT80_DESMR Length = 259 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 2/211 (0%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSFFALWLAVQQI 78 +R+ ++ P +P VK ++++ A+ P L +P + + + ++ Sbjct: 19 MRLSVVVFMLPFYGATLIPNVVKASFCLVLSMALWPRLAFAGTALPASPWTIGLMFLGEV 78 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 LIG+ L ++ F+A + AG I+G MG S VDP + + L +M +A +LFL Sbjct: 79 LIGLMLDILVRLLFSAAQAAGAIMGFSMGFSLMNSVDPMTGASESGLGHLMSQVATMLFL 138 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 NGHL+L+S L +F +P GG +N+ L +F+ + +A P++ + ++ Sbjct: 139 CLNGHLFLLSALAQSFEMVPPGGLLINAAVGEHLIVFTGQLFVMAIKIAAPILASIFLVD 198 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 LAL L+ R APQ+++ IGFPL ++VG M Sbjct: 199 LALALVARAAPQMNVLFIGFPLKVSVGFLFM 229 >UniRef50_C0A797 Type III secretion system inner membrane R protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A797_9BACT Length = 252 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 5/225 (2%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITF---AIAPSLPANDVPVF 66 + WL ++ LR L ++ P+ + +P +++ A M I P P + P + Sbjct: 3 VEWLLVWTLTGLRALGVVMLLPVPGGKVLPAMLRVACAFMFPTLLAGIIPHAPMPEPPGW 62 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + A AV+++++G+ALGF + FA AG +I ++GL A D + P+ A Sbjct: 63 PWLAE-AAVREMVLGLALGFVGRLVFAGAELAGRLIANELGLVAAPGFDVPTPSQEPLPA 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 I L+ FL GH ++ V +F P G + A LT + + G+ + Sbjct: 122 FIGSFAGLMFFL-MGGHEGALAAFVRSFDFAPAGAARFSVLAGETLTICTAQVIEFGMRM 180 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAA 231 A P I L ++LA +L R P++++F+I +P+ VG+SL+A Sbjct: 181 AAPFIALNFVISLAFSILGRAVPRMNVFIISYPVRTLVGLSLLAG 225 >UniRef50_Q3V817 Flagellar biosynthetic protein n=1 Tax=Symbiobacterium thermophilum RepID=Q3V817_SYMTH Length = 259 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 109/226 (48%) Query: 24 LALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIA 83 + + + AP+ S R VP +V++ L+ ++ F + P++ L A+ ++++G+ Sbjct: 19 MGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLV 78 Query: 84 LGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGH 143 +GF + ++ AG ++ L+MG + A DP + VL + AL+ F+ +GH Sbjct: 79 IGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGH 138 Query: 144 LWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGL 203 WLI ++ +P GG + + L + + + + L LP + ++L +A + Sbjct: 139 HWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAV 198 Query: 204 LNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 LNR QL+IF IG VG+ L+ L+P LF F Sbjct: 199 LNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFEAGFR 244 >UniRef50_A0L3J6 Flagellar biosynthetic protein fliR n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3J6_MAGSM Length = 266 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 17/219 (7%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-----ANDVPVFSFFALWLAVQ 76 R+ L AP S PKR+++ L + IT I P +P N + F V Sbjct: 26 RLSGLFLAAPFFSRNVGPKRIRVILLLWITIVIYPIVPPWPGEGNGEVIRMVFT---GVV 82 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + +GI +G + +V+ AG +IG +MGLS A +DP S + VLA ++ + L+L Sbjct: 83 EFSMGIMIGMIAHWVLVSVQIAGTMIGFEMGLSMAMVMDPTSGVQEGVLANLLYLFGLML 142 Query: 137 FLTFNGHLWLISLLVDTFHTLPIG-----GEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 FL NGH WL+ L +F ++P+G GEP+ + + +F L+LA P++ Sbjct: 143 FLLLNGHHWLLEGLARSFVSMPLGSPLPHGEPMITIVLQGIVH----MFELALLLAAPVV 198 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 L L +GL+NR +PQ+ +F + P+ +G +M Sbjct: 199 AAAKLLYLGMGLINRASPQIQVFFLAMPVAQLMGFLIMG 237 >UniRef50_A8URB1 Flagellar biosynthetic protein fliR n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URB1_9AQUI Length = 254 Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 26/248 (10%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-- 58 M+ V + L+ L L+F RV A + P+ +P +++ LA FA+A S+ Sbjct: 1 MITVDTNSLLTILLLFF----RVFAFMFMVPMFGTFFLPNIIRVYLA----FAVAASILM 52 Query: 59 -----PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATF 113 P F L A+Q+++ G GF ++ F V AGE+I + GL F Sbjct: 53 FSDLEPLQISSALEFSKL--ALQEVIFGFLSGFFLRLLFDTVFVAGEVIAVNTGLGFLMM 110 Query: 114 VDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG---EPLNSNAFL 170 P VLA ++A LFL G + L +F+++PIG +N AFL Sbjct: 111 FLPQQP-QTTVLAGFSTLMASTLFLAVGGAEAVYVGLAQSFNSVPIGSFDIYSMNGKAFL 169 Query: 171 AL-TKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 +L K+ SL G+ LALP++ + N+ L ++NR PQ+++F++G PL + VG++++ Sbjct: 170 SLFYKSFSL----GVKLALPVLIAAMLTNIILAVINRFIPQINVFMVGLPLQVMVGLTVL 225 Query: 230 AALMPLIA 237 +P+I Sbjct: 226 LLSLPVIG 233 >UniRef50_Q3ADD0 Flagellar biosynthetic protein FliR n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADD0_CARHZ Length = 255 Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 10/225 (4%) Query: 22 RVLALISTAP-ILSERSVPKRVKLGLAMMITF----AIAPSLPANDVPVFSFFALWLAVQ 76 R+ +P I+ R VP VK +++ + +A S A DV +FF L + Sbjct: 13 RLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQR-NFFLLL--IG 69 Query: 77 QILIGIALGF-TMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 + LIG+ LGF T+ FA AG+ + L GLS AT DP + N ++A + + +L Sbjct: 70 ESLIGLLLGFVTLIFA-NLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMANFIYLYGIL 128 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 + NGH L++ L +F +P G L+ L K +L+ L + +A+P + ++L Sbjct: 129 NYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIAIPFLMVML 188 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +LALG+L R APQ+++F++ F L + + I + L+P IA F Sbjct: 189 ISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFT 233 >UniRef50_C9A930 Flagellar biosynthetic protein fliR n=4 Tax=Enterococcus RepID=C9A930_ENTCA Length = 249 Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 3/214 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL-AVQQILI 80 R+LA + PI S+++ P K+ + M +T P+ PA +P S F L + ++++L Sbjct: 13 RILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPA--IPELSLFMLTVFVIKEVLF 70 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G+A+G+ Q F V AG++I Q+G S A DP + + L + +F Sbjct: 71 GMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTYYWLTIAVFFGL 130 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLA 200 + H LI+ L+ +F +P+G + + K S + + + LA P+I LL ++L Sbjct: 131 DLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAPMIIALLLVDLV 190 Query: 201 LGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 LG+++R PQ++I ++ + + + L+P Sbjct: 191 LGVISRSIPQINILMMSLSMKTAISFVVFLLLLP 224 >UniRef50_A0LT72 Type III secretion system inner membrane R protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT72_ACIC1 Length = 259 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 12/217 (5%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITF----AIAPSLPANDVPVFSFFALWLAV- 75 +R A + PI R +P VK AM + F A+AP PA V L A+ Sbjct: 18 IRTSAWLVVVPIFGTRIIPGMVKAAFAMALAFPVSGALAPLAPAPQV-----LPLCTAIL 72 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 Q + G+A+G FAAVR AG ++ G S DP + N VLAR+ D+LA+ Sbjct: 73 QNVAAGLAMGVVTLTLFAAVRAAGGLLDYFGGFSLTYAFDPMAVQNDSVLARMYDLLAVT 132 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 L G+L L+ L+ ++ +P+ P A LA GS ++ L +A PL+ +L Sbjct: 133 LLFAGGGYLLLLKGLLSSYTVIPLASSHPARILAELATVNIGSFA-VSCLEIAGPLLAVL 191 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAA 231 + ++ LGLL ++AP L++F +GFPL + V ++L+ Sbjct: 192 VVADIGLGLLTKIAPALNVFSLGFPLKILVTLTLVGG 228 >UniRef50_C1DW36 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DW36_SULAA Length = 257 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 11/210 (5%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAM------MITFAIAPSLPANDVPVFSFFALWLAV 75 R++A ST P++S +P VK+ L + M+ F I + N + + +F L L V Sbjct: 18 RIIAFFSTFPLISSTVIPHNVKVLLVVSFAFFTMLNFDI--QVKVNQIELITF--LILIV 73 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 ++I IG++LG + +A AGEI+G MGL+ +PA VL+ L L Sbjct: 74 KEIFIGLSLGLIVNILISAFSYAGEIVGFLMGLTVMNMYNPAFG-QTSVLSGFFVFLFYL 132 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 LF + LI L +F LP+ +N F L + IFL +A P I +LL Sbjct: 133 LFFVSGSYQILIGSLFKSFEILPLTEASINQGIFPYLIEKSGDIFLLSFQMAFPFILVLL 192 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 N+ L L+NR+ PQ+++F IG P + +G Sbjct: 193 VFNVVLALINRLIPQINVFFIGLPAQIWIG 222 >UniRef50_C3XLD0 Flagellar biosynthetic protein fliR n=2 Tax=Helicobacter RepID=C3XLD0_9HELI Length = 259 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 112/220 (50%), Gaps = 5/220 (2%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL---PANDVPVFSFFALWLAVQ 76 LLR +I+ P + + ++K L ++T P L P ++ + F L+ Sbjct: 19 LLRFAGIIAFFPFFENQLITAQLKGTLIFLLTIFFIPLLDVVPPSEWTILRFIVAGLS-- 76 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 ++++G +Q F + GE+I MGL+ A DP + P++ +++ +LALL+ Sbjct: 77 EVMLGFLASMALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQKPIVGQLLTLLALLI 136 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 L + H + ++ +P+GG + N + K+ S IF+ GL ++ P+I L+L Sbjct: 137 MLGLDYHHLFFYFVSESVKEIPLGGFMYSQNYIEYIIKSFSHIFVIGLTMSFPIIALILL 196 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 ++ G++ + PQ ++ IGFP+ + + +++ ++P I Sbjct: 197 SDIIFGMIMKAHPQFNLLAIGFPVKIAIAFAVLIVIVPAI 236 >UniRef50_C2ED98 Flagellar biosynthetic protein fliR n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED98_9LACO Length = 252 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 6/240 (2%) Query: 22 RVLALISTAPILSERSVPKRVKL---GLAMMITFAIAPSLPANDVPVFSFFALWLAVQQI 78 RV + +S APILSER+ P KL G ++ F++A + +V + F + +AV++ Sbjct: 15 RVFSFMSVAPILSERNFPNLCKLILGGGLILSAFSLAAAFE-EEVALAVF--ILMAVKET 71 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 + G+A+G+ + F V G+ I Q G A DP + ++ LA+++F Sbjct: 72 IFGLAMGYLCRLVFFGVMITGQFIDFQDGFIMAQAYDPTMQSSTSQFGKMYYWLAIMVFF 131 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 + +I L+ +F + +G L + + K + F + P+I +L ++ Sbjct: 132 ASGLYRQMIRGLMTSFDIVSLGYPTLTDESIGGIVKLFAKTFEMAFNMGAPIIISILVID 191 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 + LG+L+R PQL++ ++ + TV + ++P + F FSE+ +AD I + Sbjct: 192 IVLGILSRSIPQLNVLMLSLNVKTTVSFIISMLVLPNMVDFLASNFSEMIQNMADFIKSI 251 >UniRef50_A9AP22 Type III secretion protein SctT n=18 Tax=Burkholderia RepID=A9AP22_BURM1 Length = 270 Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 9/243 (3%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW-- 72 LY P R+L ++ P+ +E+ V V+ GLA++I +AP++ A + F W Sbjct: 19 LYVMP--RLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQIASLPFVT-WCV 75 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP-ASHLNMPVLARIMDM 131 L ++ ++G+ L A++ G +I Q G A F DP H P + ++ Sbjct: 76 LVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPT-SGFLNF 134 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIG--GEPLNSNAFLALTKAGSLIFLNGLMLALP 189 +A+ LF+T G L+ L ++ PIG G +S + + IF + LA P Sbjct: 135 VAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVKLAAP 194 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I +L+ + L +GL+ R PQL++FV PL + + +M +P++ L S Sbjct: 195 VIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALLSPDSG 254 Query: 250 LLA 252 L+A Sbjct: 255 LVA 257 >UniRef50_Q2RQH6 Flagellar biosynthetic protein fliR n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RQH6_RHORT Length = 253 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 13/250 (5%) Query: 11 SWLNLYFWPLLRVLALISTA----PILSERSVPKRVKLGLAMMITFAIAPSL-----PAN 61 ++LN + L V + TA P LS V +++ LA+ IT P++ PA Sbjct: 4 AFLNQNLFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPAP 63 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 D +F L +AV+ IG+ LG QF V AG I+G GL A DP + Sbjct: 64 DNT--AFLVLLIAVEAT-IGVFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQ 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++A + +A+++ H +I +V+++ P G P + L S F Sbjct: 121 SALIAGFLGEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQMPDTGDMVQLLVTILSSGFR 180 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP-LIAPFC 240 GL LA P I + N LG++ R+ PQL++ + P + G++L+ +P LI F Sbjct: 181 LGLQLAAPFIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFL 240 Query: 241 EHLFSEIFNL 250 H + NL Sbjct: 241 GHFERGLINL 250 >UniRef50_P74932 Flagellar biosynthetic protein fliR n=3 Tax=Treponema RepID=FLIR_TREPA Length = 265 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 26/248 (10%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP-SLPA 60 ++ + + S +L+F +RV AL+ T P+LS RSV + V++ LA +I F + P + PA Sbjct: 1 MERSFDALFSQASLFFLAAVRVFALMFTVPLLSVRSVSRVVRVALAGLIAFLVLPLAYPA 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V FS + + L + + L+GI GF + F AG+ QMG + D + Sbjct: 61 PMQVREFSAYYVLLLLGEGLLGILTGFFISVIFTTFSAAGQFFSYQMGFGTSEMYDTFAQ 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG-----EPLNSNAFLA--- 171 + P++ + ++ +A+L+FL G F L +GG + +N FL Sbjct: 121 IENPLMGQFLNFVAMLVFLQIKG-----------FQILFLGGVLRSFQAVNCFVFLRKQE 169 Query: 172 -----LTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI 226 TKA S +FL+ + +ALP++ LL +++++GLL + APQ+++ G PLT+ V Sbjct: 170 ALLLFFTKALSALFLHAMTIALPIMGALLLIHVSMGLLTKAAPQMNLLSEGLPLTIVVTF 229 Query: 227 SLMAALMP 234 L++ ++P Sbjct: 230 VLLSVILP 237 >UniRef50_C2KTP9 Flagellar biosynthesis protein FliR n=3 Tax=Mobiluncus RepID=C2KTP9_9ACTO Length = 252 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVK------LGLAMMITFAIAPSLPANDV 63 L +L + +R + P S R+ R+K LGLA M I P V Sbjct: 9 LGFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQR--IGP------V 60 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 FF + +Q IG ++ ++ AA++ AG ++ L+ G + A DP + N Sbjct: 61 AQTDFFVVECVIQA-FIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTNQA 119 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 R+ ++ A+ L T NG+ LI L +F +P G SN L + + ++ Sbjct: 120 TFGRVYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTMSA 179 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTV 224 L +A PL+ +L ++ +GLL ++AP ++ F +GFPL + V Sbjct: 180 LEIAGPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMV 220 >UniRef50_B5YIZ0 Putative flagellar biosynthetic protein-like protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ0_THEYD Length = 243 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 13/218 (5%) Query: 14 NLY-FWPL-LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 N Y F P+ +RV ++ P + R+VP + A+ I+ AI P + + + L Sbjct: 10 NFYSFIPVFIRVSIILFFLPYIGSRTVPIMFRFFFALSISLAIIPFIHVKEENL-----L 64 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 ++ G+A+G ++ AAV A + + +Q+G + A +P M L+ +M Sbjct: 65 ISLFNAVVFGMAIGIMVRVIIAAVEIASQWMSMQIGFTIANVFNPQFGELMGPLSIFYEM 124 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 + LF + + HL + ++V TF PI + N + ++F L LA P++ Sbjct: 125 FTIALFFSLDLHLSFVEMIVKTFE-FPIKFS-FSGN----IIAFSYIMFPLALKLAAPVL 178 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 + + +N+ LG L+R+ PQ ++F +GFPL L GI++M Sbjct: 179 LVQVLMNIGLGFLSRIMPQANVFFVGFPLLLATGIAVM 216 >UniRef50_Q01PP9 Type III secretion system inner membrane R protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP9_SOLUE Length = 257 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 7/211 (3%) Query: 18 WPLLRVLALISTA----PILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--SFFAL 71 + L VLA + A PI R P+ V+ LA+ A+ PA D + A Sbjct: 13 YAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQVGPATLAG 72 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 WL + + +G+A+G ++ A+ A +++GLQ G ++A+ +DP + + +L + Sbjct: 73 WL-LSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGILLVFAQL 131 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 ++ +LF ++ L + +P G + + L + G+++F G+ LALP++ Sbjct: 132 MSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILFSVGVRLALPVV 191 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTL 222 LL+ L++AL LL R+ QL + + FP+ + Sbjct: 192 ALLVMLDVALALLGRLNAQLQLLSLAFPVKM 222 >UniRef50_Q2W9Q3 Flagellar biosynthetic protein fliR n=3 Tax=Magnetospirillum RepID=Q2W9Q3_MAGSA Length = 254 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 6/225 (2%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALWL 73 +F R+ A + P L V R++L LA+ + F + P + A+ VP S + L Sbjct: 13 FFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPAVPR-SVGGMLL 71 Query: 74 AV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 AV + ++G+ LG + F + + AG +IG Q GL+ A DP + +L + + Sbjct: 72 AVFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSFDPIAQQQSQLLTGFLANI 131 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFL-ALTKAGSLIFLNGLMLALPLI 191 L+ + H + + ++++ P G +PL + L + F G A PL+ Sbjct: 132 GLVAVFATDMHHLMFQAVFESYYLFPPG-QPLQFGDYAETLGHLATDTFKVGTQFAAPLV 190 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 L LGLL+R+ PQL +F +G P+ + VG+ L MPL+ Sbjct: 191 VFGLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWLFMVTMPLV 235 >UniRef50_C1F995 Flagellar biosynthetic protein fliR n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F995_ACIC5 Length = 260 Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 121/251 (48%), Gaps = 15/251 (5%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP---SLPANDVPV 65 W +L+ +LRV L+ AP+ S ++P +VK + +T +AP LP D Sbjct: 8 WPQYLSALVLVMLRVSGLMLFAPVFSSTAIPPQVKAVFTLAVTVCLAPVVAGLPHADA-- 65 Query: 66 FSFFALWLAVQQIL----IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 L Q+IL +G+ G ++ + AG+++G+ S +DP + + Sbjct: 66 ------RLGPQEILSELAVGLLFGICLRMLMEMLTFAGDLLGIAFSFSLVNLLDPNAPVQ 119 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +P++ + +L L+ L+ +I+ L+ TF +P+G L++ A+ + G+ +FL Sbjct: 120 VPLMGQFFSLLGTLVLLSTGLDRTMIAALMRTFAVVPVGSFVLSAKTAWAVAEMGTGLFL 179 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 L LA P++ + ++ A+GL R++PQL + P+ +G ++ + L F E Sbjct: 180 AALQLAAPVMVATMLVDFAVGLAARLSPQLPALSLTVPVKTMLGFVVLIGSLALWPEFIE 239 Query: 242 HLFSEIFNLLA 252 F + N A Sbjct: 240 ARFDALLNTAA 250 >UniRef50_D1R8P1 Putative type III secretion inner membrane protein SctT n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P1_9CHLA Length = 285 Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 10/220 (4%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS-LPANDVPV-FSFFALWLAVQQ 77 L R+ +I+ +P L R +P VK+ LA+ + P L P+ F+F AL L ++ Sbjct: 34 LARMFPIIAQSPFLGARVLPHPVKVSLAISLFVIFFPQMLLLTTTPIGFNFNALLLLFKE 93 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 ILIG LGF + F+ V+ AG II Q G + DP + +++M+ + LF Sbjct: 94 ILIGFILGFIISIPFSIVQNAGMIIDHQRGGASLMVNDPTIQNQSSPVGTLLNMVLIFLF 153 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT--KAGSLIFLNGLM-----LALPL 190 + I + ++ +P + +N N F A + + + LN +M LA P Sbjct: 154 WVVDIPFLFIDAIFTSYEIVP-PDQFINPNFFDAASPFRKTQIELLNKVMVVSIQLATPA 212 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 + +L ++ LG++NR+APQ+ I +G PL +G+ ++ Sbjct: 213 LLAILMTDVFLGIVNRLAPQVQITFLGMPLKSLLGLGVIC 252 >UniRef50_C5EFG8 Bifunctional flagellar biosynthesis protein FliR/FlhB n=2 Tax=Clostridiales RepID=C5EFG8_9FIRM Length = 261 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 107/211 (50%), Gaps = 4/211 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFS 67 L + +++ R+ +I P+ + + VP V+ GLA+ ++ IAP+ A V ++S Sbjct: 6 LEYFDIFLLVFARMGGMIFINPVFARKGVPLMVRTGLALALSLLIAPAARAGGQAVVLYS 65 Query: 68 FFALWLA-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 F + A V+++++G+ +G Q F + AG+++ GL+ +DP + + +L Sbjct: 66 TFDMAEALVRELILGLGIGCVFQLFFYMLYVAGDLLDTAFGLAMGKVMDPMNGVQTAILG 125 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFLNGLM 185 + +++ L F HL + L T+ +P+G G N + + +FL + Sbjct: 126 QFVNIFFFLYFFATGCHLLTVRLFAYTYEVIPVGAGVFFVRNVLWYIITMSATVFLMVIK 185 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVI 216 LALP + L + +G+L ++ PQ+ +FVI Sbjct: 186 LALPFVAAEFVLEMTMGVLMKLIPQIHVFVI 216 >UniRef50_A6DDV7 Flagellar biosynthetic protein fliR n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDV7_9PROT Length = 254 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 4/238 (1%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV-QQI 78 +R+ + +S P + ++P VK L++ ++ P +P + + + + LA+ +I Sbjct: 18 FIRISSFLSFLPFFNYMNIPMNVKAALSIWLSILFFPIVPKVNFEI-NLINILLAIFNEI 76 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 +G +Q F ++ A E I MG + A +DP +L++ +A+L+FL Sbjct: 77 AFAFFVGMALQLIFDILKFAAEQISFVMGFTMANVIDPNFGGQSTILSQFFIWIAILVFL 136 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 TF G I LL LP G + F+ G+ LA P+I + L + Sbjct: 137 TFGGDHLEILLLSKFMSNLPFGAFFNYHKIYEYFLVYMGKYFMIGVGLAFPIIAISLMSD 196 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVG-ISLMAALMPLIAPFCEHLFSEIFNLLADII 255 + G++ + PQ ++ V+GFP+ + V I LMA L ++ F + E+F ++ I Sbjct: 197 IIFGMIMKTMPQFNLLVVGFPIKIFVSFIVLMAILSSMMLVFSREI-KEVFKIVLGFI 253 >UniRef50_Q17YT4 Flagellar biosynthetic protein fliR n=18 Tax=Helicobacteraceae RepID=Q17YT4_HELAH Length = 255 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 8/229 (3%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML E + +F LRV ++S P VP V+ L++ ++ P+L Sbjct: 1 MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ + + ++ +G+ +Q FA++ A + I MGL+ A+ DP S Sbjct: 61 SNATYTPESFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG---EP-LNSNAFLALTKAG 176 P++ + + +LA+L+ L + H +I + + +P+G EP L N + KA Sbjct: 121 QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKN----IVKAF 176 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 S +F+ G +A P++ L+L ++ G++ + PQ ++ IGFP+ + +G Sbjct: 177 SHLFIIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >UniRef50_C7C777 Flagellar biosynthetic protein fliR n=8 Tax=Methylobacterium RepID=C7C777_METED Length = 258 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 94/183 (51%) Query: 54 IAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATF 113 + P LP + + + + L + +ILIG+ LG ++ AA++TAG +I Q+GLS+A Sbjct: 58 VRPMLPTGNAALAAPSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMT 117 Query: 114 VDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT 173 VDP + + ML + L L + H + + ++ LP G P ++A Sbjct: 118 VDPTMGGQQAAIGNFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLAL 177 Query: 174 KAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 A S F + ++ P I + NL LG+L+R+ PQL +F + P ++ +G+ L+ + Sbjct: 178 AAFSRSFALAVRISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGAL 237 Query: 234 PLI 236 LI Sbjct: 238 GLI 240 >UniRef50_B6AV41 Flagellar biosynthetic protein FliR n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AV41_9RHOB Length = 253 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 15/243 (6%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M + E W + + L RV AL+S P L E S+P RVKL +++ ++ + P + Sbjct: 1 MSSLVPEFWTPYALSFILVLFRVAALVSLLPALGEASIPARVKLVMSVCMSLIVFPIV-- 58 Query: 61 NDVPVFSFF-ALWL--AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 +DV S A WL A+ ++ IG+ GF ++ ++ AG I LS + A Sbjct: 59 HDVSQNSLAGANWLSAAIAEVGIGLWFGFMLRVFVFCLQIAGSIAAQSTSLS--QILGSA 116 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 +P L ++ + L L+ H+ + L+ ++ LP G P S +++AG Sbjct: 117 GAEPLPALGHVITTAGMTLALSLGLHVSAVQYLIGSYTILPTGQLPDIST----ISEAGV 172 Query: 178 LIFLNGLMLAL----PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 G LA P L L NL LG++NR PQL + +G P+ + L+A + Sbjct: 173 AQIAWGFQLAFSLAAPFFILSLLYNLTLGVINRAMPQLMVAFVGAPVITAGALVLLAISI 232 Query: 234 PLI 236 P+I Sbjct: 233 PVI 235 >UniRef50_Q0ANB4 Flagellar biosynthetic protein fliR n=2 Tax=Hyphomonadaceae RepID=Q0ANB4_MARMM Length = 250 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFA----IAPSLPANDVPVFSFFALWLAVQQ 77 R+ A++ P E S+P R +L A++ IAPSLP +P + + + Sbjct: 18 RLGAILMLLPGFGEPSIPVRFRLAFALLFCLILGPIIAPSLPV--MPEQPLAMAGIVMSE 75 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 ++IG+ +G + + AG++IG+Q GL+ A DP+ +++ +++ L+L Sbjct: 76 LIIGLMIGAVARIFMSTAAVAGQVIGMQSGLAMAQSFDPSQGAQGALISTFLNLTFLMLL 135 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 L N H L+ + +++ G P ++A A F G+ LA PLI L Sbjct: 136 LATNTHHMLLQMAANSYQVFDPGSMPSLTDAADWALSAFIDAFRIGVQLASPLIMYGLLF 195 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 LALG+L+R+ PQ IF I P + +G+ ++A Sbjct: 196 YLALGVLSRLMPQAQIFFIAMPSNIMIGLFILA 228 >UniRef50_A8LMR5 Flagellar biosynthesis protein FliR n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LMR5_DINSH Length = 257 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 109/231 (47%), Gaps = 9/231 (3%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL--AVQQ 77 LLR+ A ++ P ER+VP R+KL L + +T + P+L A P A W+ + Sbjct: 20 LLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADWVLAGGAE 79 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLS--FATFVDPASHLNMPVLARIMDMLALL 135 ++ G+ LGFT + A++ AG I L+ F V P P L I M L Sbjct: 80 VVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPDPQ---PALGNIFLMAGLA 136 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG-SLIFLNGLMLALPLITLL 194 L H+ L + +F LP+G P NS+ A A S +F+ G L+ P + Sbjct: 137 LAALSGLHVHLTEAFLLSFLLLPVGNFP-NSDIISAWAIADVSRMFVVGFTLSAPFVAAA 195 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 + NLALG +NR PQL + +G P G++L A +P + +LF Sbjct: 196 MLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHWWYLFE 246 >UniRef50_Q3V884 Flagellar biosynthetic protein FliR n=16 Tax=Listeria RepID=Q3V884_LISMF Length = 253 Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 5/227 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIG 81 RV + + P+L R++P VK+ M I+ +A + + + + L + +++ G Sbjct: 15 RVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITMLPDLLLRVT-SEVVFG 73 Query: 82 IALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFN 141 +AL ++ + AG +I +G S +DP+ + A I+D +++FL+ Sbjct: 74 LALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFFVVIFLSLQ 133 Query: 142 GHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL--NGLMLALPLITLLLTLNL 199 G +LI L+ +F L F+ L G+L F + + +ALP++ + +N+ Sbjct: 134 GMDYLIYYLMKSFE-FTASVSILFEKGFIDLL-LGTLGFALASAVSIALPIMGSIFIVNI 191 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 L +++ APQ++IF+ F + +T GI ++A +P+++ ++L E Sbjct: 192 ILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDE 238 >UniRef50_C0QP99 Flagellar biosynthetic protein FliR n=3 Tax=Hydrogenothermaceae RepID=C0QP99_PERMH Length = 260 Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 22 RVLALISTAPILSERSVPKRVK------LGLAMMITFAIAPSLPANDVPVFSFFALWLAV 75 R++ + + P+L+ +P V+ L +M F I + + V +F L L Sbjct: 19 RIIGIFLSFPLLNTGLIPANVRILLVVSLSFYIMKIFGINAGISPENFSVLLYFLLVL-- 76 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 +++L+G LG + +A A EII MG + DP + + VL R +L L Sbjct: 77 KELLMGFLLGLLVNLFISAFSYAAEIISYFMGFTIVNLFDP-TFGQISVLDRFFILLFYL 135 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 LF + ++ L TF +P+G +N++ F L + ++F L +A P + +LL Sbjct: 136 LFFITGAYQIVLGSLFMTFKIMPVGKLYINTDIFPHLLEKLPILFYLALKIAFPFVLILL 195 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +N+AL L+NR+ PQ+++F++G PL + VG++ +A LI F Sbjct: 196 IVNVALALINRLIPQINVFIVGLPLQIFVGLASLAIGTSLIIYFS 240 >UniRef50_B8JD81 Type III secretion system inner membrane R protein n=3 Tax=Anaeromyxobacter RepID=B8JD81_ANAD2 Length = 250 Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 5/213 (2%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAI--APSLPANDVPVFSFFALWLAVQQ 77 LLR L + AP+L R VP RV+LGLA+ +T+A+ PA P A+ + Sbjct: 15 LLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGSPAVPPPPGLAALAGAALAE 74 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 G+ G ++ A AG ++GL GL ++ VDP + +++ + ++A + Sbjct: 75 TATGLLAGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESSAVSQTVFVVAQAVA 134 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEP-LNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 + H ++ LV P G P L A A+ +A + L + LA P++ L Sbjct: 135 VALGVHREAVAWLVRAALVWPPGAAPDLAELASRAVGQAALSVALA-VRLAFPVMAAALL 193 Query: 197 LNLALGLLNRMAPQLSIFVIGFPL-TLTVGISL 228 +L L + RMAPQLS+ +GF TL G++L Sbjct: 194 GHLLLAAMGRMAPQLSLSNVGFSASTLAAGLAL 226 >UniRef50_A0NPF3 Flagellar biosynthetic protein fliR n=3 Tax=Rhodobacteraceae RepID=A0NPF3_9RHOB Length = 257 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 4/229 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAM---MITFAIAPSLPANDVPVFSFFALWLAVQQI 78 R+ ++ P L E ++P R +L +A+ M+ + + +V ++ + L ++ Sbjct: 21 RLGTMVMLLPALGESTIPTRFRLTIALALTMVLYPVGSQYYPVEVTSNTYRMIALLFGEV 80 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL-ARIMDMLALLLF 137 IG+ +G + + ++ AG I+ Q GL+FA D A+ L + +L + L Sbjct: 81 AIGLGIGLCAKMITSVLQIAGMIMANQSGLAFALGTDFANQGQQGALFGNFLSILGITLV 140 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 + H +I+ L D+F P G P + T+ + +F + ++ P + + L Sbjct: 141 FVSDSHYLVIAALHDSFMIFPPGLAPPVGDFSQNATETVAHVFSIAVRMSAPFLVVGLVF 200 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 LGLLN++ PQ+ IF I P+ + +G+ ++ L+ + F F E Sbjct: 201 YFGLGLLNKLMPQMQIFFIAMPVNIAIGLFMLMVLITTLMMFYLDHFQE 249 >UniRef50_C4L639 Flagellar biosynthetic protein fliR n=2 Tax=Exiguobacterium RepID=C4L639_EXISA Length = 256 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 4/228 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + ++++Y R+ + P+ S R +P ++G + + + +L + + + F Sbjct: 4 VDFISMYGLTFARLSGFFVSVPLFSTRQLPVMHRVGFSAFLAYYAMFTL-TEPIQMTNAF 62 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L + V +++IG+ LG + F A + AG +I LQ+GL+ A+ DP P++ R Sbjct: 63 VLQV-VYEVMIGLLLGLLINILFFAPQIAGGVIDLQLGLAMASAYDPMFGGQSPLIGRFY 121 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN--SNAFLALTKAGSLIFLNGLMLA 187 + L + LT N HL LI + +F P G +N + + K ++ + L LA Sbjct: 122 YIFTLFILLTSNLHLLLIDGIYYSFQIYPPGQPMINFTEASLMMAVKVVTMTMMVALQLA 181 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 LP++ LL ++LALG L + APQ +IF IGF L G ++M LM L Sbjct: 182 LPMMASLLLVDLALGFLAKSAPQFNIFAIGFSFKLIAGFAVMVLLMGL 229 >UniRef50_C4K6D9 Type III needle complex export protein n=2 Tax=Candidatus Hamiltonella defensa RepID=C4K6D9_HAMD5 Length = 254 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%) Query: 31 PILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQF 90 P S + ++L + M++ F++ P P +F L L +++LIG+ L F + + Sbjct: 31 PFFSNNVLTGSLRLPITMLVAFSLWPYQEKVLPPFETFLYLGLVSKELLIGVLLAFLISW 90 Query: 91 AFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLL 150 F + G II Q G + ++ +DP S ++ L+ ++ A +FL G ++L Sbjct: 91 PFWILHAVGAIIDNQRGATISSSIDPISGVDTSELSNFFNLFAAAVFLQGGG----MTLF 146 Query: 151 VDTFHTLPIGGEPLN------SNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLL 204 ++++H PL S F LTK S L+LA P+I +LL LGLL Sbjct: 147 LESYHQSYQICSPLRDCTFAFSPIFAILTKLMS----KSLILASPVIAVLLMTEAILGLL 202 Query: 205 NRMAPQLSIFVIG 217 +R APQL+ F I Sbjct: 203 SRFAPQLNAFSIA 215 >UniRef50_A6Q2N9 Flagellar biosynthetic protein fliR n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2N9_NITSB Length = 255 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 3/207 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSFFALWLAV-QQIL 79 RV A+ + P+ + +P +K+ L + +F + +L D + L + ++IL Sbjct: 17 RVGAIFLSLPVFNANYIPSNIKILLILAFSFYLIQNLTIYYDFSKVTLMQFTLMILKEIL 76 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G ++G + AA A EII MG + DP ++ + +L+R+ ML +LF Sbjct: 77 LGFSIGLLVSIFVAAFTYAAEIISYFMGFTIVNVFDP-TYGQVSILSRLFIMLFFILFFV 135 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 + + I ++ +F +P+ + F L + SLIF L+ P ++ +NL Sbjct: 136 TDAYHIFIISIIKSFSYIPLVQTSYPDSFFTYLFEKSSLIFTLSFQLSFPFALIVYLINL 195 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGI 226 AL L+NR+ PQ+++F++G PL + VGI Sbjct: 196 ALALVNRLIPQINVFIVGLPLQIFVGI 222 >UniRef50_A8TPM4 Flagellar biosynthetic protein fliR n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPM4_9PROT Length = 255 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 10/220 (4%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITF----AIAPSLPANDVPVFSFFALWLAVQQ 77 R A++ P + E +P RV+L A+ + IAP LP P + L L V + Sbjct: 20 RTSAVLLLLPGIGEVFIPVRVRLLFAVALALAVAPVIAPQLPPE--PTSAAGLLTLVVGE 77 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 +LIG+ G + + + TAG +I GL+ AT +P+ + ++ +L +++ Sbjct: 78 VLIGLYFGLVARILWLTLDTAGRVISFSTGLASATVFNPSLSEQGSAIGLVLTLLGIMML 137 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 + H +I +V+++ GGE + + A+T+ S F + L+ P L Sbjct: 138 FIADLHHMVIRAVVESYAVFRPGGELMIGDFSEAITELVSGSFKVAVQLSAPFFVFGLLF 197 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVG----ISLMAALM 233 + LG+L R+ PQL IF IG P + +G ++++ ALM Sbjct: 198 FVTLGVLARLMPQLQIFFIGLPAQIYLGLFVWVTILGALM 237 >UniRef50_A7HLM8 Type III secretion system inner membrane R protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HLM8_FERNB Length = 255 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 IG +G AV EI G+Q G + + +DP P+ + + ++++ +F++ Sbjct: 79 IGFVIGLMAYTIVGAVYIGSEIFGIQSGFNVSGSLDPTME-ESPITSEFVYLISVYVFVS 137 Query: 140 FNGHLWLISLLVDTFHTLP-----IGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 GHL + S +V + P I + +NS F A F+ L +ALPLI L+ Sbjct: 138 LKGHLIIYSSVVKSIEKFPLVITDIPFKEINSQYFELFMDA----FIFSLQIALPLIGLM 193 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 +N+ G+L+R+ PQ+++F++ P + + L+ ++P+ Sbjct: 194 FLINVLFGILSRLVPQMNVFMVAMPASTMIMFLLLVTMIPV 234 >UniRef50_C7DF44 Flagellar biosynthetic protein FliR n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DF44_9RHOB Length = 260 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 14/221 (6%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAM----MITFAIAPSLPANDVPVFSFFALWLAVQ 76 LRV A+++ P L ERSVP RV+LGLA+ ++T IAP LP + V + L L Sbjct: 24 LRVGAMMAVLPGLGERSVPARVRLGLAIALTVLVTPLIAPDLPEPE-EVSNLVGLLLI-- 80 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + IG+ LG +++ + TAG I LS F A P + ++ L + Sbjct: 81 EASIGLLLGMSLRLFVFTLSTAGAIAAQSTSLS-QIFGGSAGAEAQPAIGHVLVTGGLTI 139 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSN--AFLALTK-AGSLIFLNGLMLALPLITL 193 + HL ++ +V ++ + P G PL++ A +++ A S F LA P Sbjct: 140 AMITELHLRVVEFIVMSYGSFPT-GVPLSATFVADFGVSRVAASFAF--AFTLAAPFFIA 196 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 L N+ LG++NR PQL + +G P+ G+ L+A P Sbjct: 197 SLIYNVTLGVINRAMPQLMVSFVGAPVITAGGLVLLALSAP 237 >UniRef50_UPI000169930B flagellar biosynthesis protein FliR n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169930B Length = 87 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-NDV 63 + Q +W+ + WPLLR+ A++ AP+ S R VP R +L LA+ IT+A+AP+LP + Sbjct: 4 SEAQLDAWIGAWLWPLLRIGAMLMAAPVFSSRQVPVRFRLALAVFITWAVAPNLPPMPSI 63 Query: 64 PVFSFFALWLAVQQILIGIALGF 86 V + + +QQILIG+ +GF Sbjct: 64 DVIGYPGFIIMLQQILIGVVMGF 86 >UniRef50_Q1D9K4 FliR/MopE/SpaR family protein n=2 Tax=Cystobacterineae RepID=Q1D9K4_MYXXD Length = 272 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALWLAVQQ 77 + RV+ ++ +P L VP +K+G+ + ++ + P + + +P+ + + L ++ Sbjct: 27 MCRVMPVLIFSPFLGGEVVPTELKMGIGLTLSIVLYPLIAGSVTSIPLSALPYIALMAKE 86 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 + +G + F + F A R AG ++ G + A P + + + LA++LF Sbjct: 87 VFVGFTIAFVVNTLFEAARVAGNLVDTMSGSNNAQLYVPQLGQQVTLFSSFKVQLAVVLF 146 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNA-----FLALTKAGSLIFLNGLMLALPLIT 192 LT NGH +I L D+ +P+ G P + L + L+ ++ + A ++ Sbjct: 147 LTLNGHHLVIEALADSLVAVPLDGFPRFHDGPWPFFDLMIRVFADLLRVSLALAAPAMLA 206 Query: 193 LLLTLNLALGLLNRMAPQLSIFVI 216 LT ++ALG +NR+APQ+ +F I Sbjct: 207 TFLT-DVALGAINRVAPQIQVFFI 229 >UniRef50_Q21AA3 Type III secretion system inner membrane R protein n=3 Tax=Bradyrhizobiaceae RepID=Q21AA3_RHOPB Length = 248 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 8/203 (3%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA----LWLAVQQ 77 RV + AP S ++P +V+L LA+ +T ++P L A P A L L + Sbjct: 18 RVGTCMMVAPGYSRSNIPVQVRLFLALSVTLMLSPLLEATVRPALEGAAAPAILGLIWSE 77 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 +++G+ +G T + FAA+ T + +GL+ A VD H +P L ++ + A +LF Sbjct: 78 LVVGLMIGLTARVFFAALETLATFVASAIGLNLAGTVDDGEH--VPALVPLITVSATVLF 135 Query: 138 LTFNGHLWLISLLVDTFHT-LPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 H L+ L+ ++ LP G + + L S F L +A P + + Sbjct: 136 FMTEQHWQLLRGLLGSYRIWLPATGVGIG-DGVAQLVDHLSQAFTLALRVASPFVIYSVI 194 Query: 197 LNLALGLLNRMAPQLSIFVIGFP 219 +NLA+GL N++ P + ++ I P Sbjct: 195 VNLAIGLANKLTPSIPVYFISLP 217 >UniRef50_B9L5A9 Flagellar biosynthetic protein fliR n=2 Tax=Thermomicrobia (class) RepID=B9L5A9_THERP Length = 260 Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-- 59 ++VT+ S + L+ + RV ++S P ++VP ++ LA+++ A+ P +P Sbjct: 1 MEVTTPLIPSSIALFVLVVTRVGLVLSLLPGFGSQAVPLPARVALAVVLALALVPFVPTD 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 A+ + + FA+ LA ++++ G+ALG + FAAV A +IG Q+G A +PA Sbjct: 61 ASGLSDPTVFAVALA-RELVTGLALGLAVAAVFAAVEMAASLIGYQLGFGLAATFNPAFG 119 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSN---AFLALTKAG 176 + L + LA L+ NGH L+ L + LP G + + A +ALT A Sbjct: 120 MQGTALNTLYLALAALVLFGTNGHHQLVGALARSLILLPPGAAAPDVDTPRAVIALTGA- 178 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFP 219 +F + L + LP+ LL ++ LGLLNRM PQ+S+F +G P Sbjct: 179 --MFSDALRIGLPIAGSLLVADIGLGLLNRMVPQMSVFFVGLP 219 >UniRef50_Q2SEX2 Flagellar biosynthesis pathway, component FliR n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEX2_HAHCH Length = 226 Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 1/174 (0%) Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 ++++G+A+ + AF + AG +I Q G A ++PA++ P++ I+ A Sbjct: 45 NELVLGLAMALGLHAAFTVFQIAGRLIDFQSGFGAANIMNPATNSAEPLMGTILLFFATF 104 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 +F + + H +I L + +P G + + F K L+F ++LA P++ +L Sbjct: 105 VFFSMDAHHMVIKGLAYSVAQVPPGSGLVRMD-FPGAMKQFGLMFSFAMVLAAPVLAVLF 163 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L++ + ++ R PQ++++ + PL + +GI + A + + P +F+ IF Sbjct: 164 LLDVGVAVMARTMPQMNVYFLFLPLKVALGIIVTALSLKYLTPLIGEVFNSIFR 217 >UniRef50_A9HH75 Putative flagellar biosynthetic protein fliR n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HH75_GLUDA Length = 270 Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 10/222 (4%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV------FSFFALWL 73 L RV AL+ AP L E + P RV+ G+A+ T AI P + V V A+ + Sbjct: 23 LCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTALRMPSVAIAV 82 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP--VLARIMDM 131 V ++L G+ +G+ + A+ A +++ + GL A+ + P S L ++ + M Sbjct: 83 VVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGL--ASVLQPDSELGASSTAISHMASM 140 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L ++FL+ + ++ + ++ P G P+ + ++T+A S F L LA P + Sbjct: 141 LIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEATSQTFALALQLAAPFV 200 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 + LG+LNR+ P + ++ I P L G+ L+A L+ Sbjct: 201 LIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLI 242 >UniRef50_Q1NCV3 Translocation protein in type III secretion n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCV3_9SPHN Length = 268 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 9/190 (4%) Query: 31 PILSERSVPKRVKLGLAMM---ITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFT 87 P+ ++ ++P V+ + + + FA+ P+ D+ F + + L ++ IGIA+GF Sbjct: 36 PLFAQNTIPATVRNAIILTFGGVAFALQPNFMVQDIGTFGWAIMLL--REAGIGIAIGFF 93 Query: 88 MQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLI 147 A+ AGEII ++G + ++P + ++ LA +LF + G L L+ Sbjct: 94 FATILWAMEAAGEIIDAKVGATIGQILEPNGGTMTSLTGSLLQRLAHVLFAAWGGLLLLV 153 Query: 148 SLLVDTFHTLPIGGE-PLNSNAFLALTKA--GSLIFLNGLMLALPLITLLLTLNLALGLL 204 ++++F PI P+ L L + G L+ L L+ A P++ +L ++ ALGLL Sbjct: 154 GTIMESFVIWPIAKSWPVLDPQSLILFEGEFGRLMTL-ALVFAAPILVMLYVVDAALGLL 212 Query: 205 NRMAPQLSIF 214 NR A QL++F Sbjct: 213 NRFAQQLNVF 222 >UniRef50_A6CEQ7 Flagellar biosynthetic protein fliR/B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEQ7_9PLAN Length = 329 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 80/152 (52%), Gaps = 3/152 (1%) Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 W + ++ +G +LG + +++ AG++I Q G++ +P +N + + + Sbjct: 141 WSILGELTLGFSLGLGIYIILLSLQMAGQMIDQQAGMALGEVFNPGFDMNASLSGQYLYF 200 Query: 132 LALLLFL---TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + + +FL NGHL ++S L+DTF P+G +++N L + + +A Sbjct: 201 IGISVFLLMEPVNGHLLMLSSLIDTFQVFPVGEGIVSTNTLDLLQTLMHQSLVLSIKVAA 260 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPL 220 PL+ + +++++G L PQ+++ VIGFP+ Sbjct: 261 PLLAISALISISMGYLGHTVPQINVLVIGFPI 292 >UniRef50_D2TZ37 Type III secretion apparatus protein SpaR,YscT,HrcT n=1 Tax=Arsenophonus nasoniae RepID=D2TZ37_9ENTR Length = 256 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 8/199 (4%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-SFFALWLAVQQILI 80 R+ + S P LS + +K L++ I + P A ++P S L + +++++I Sbjct: 24 RIFPIFSIIPFLSNNILSPTIKFPLSLFIAMGVWP-YDAYELPQLESMGYLVILLKEVII 82 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G+ + + F ++ G II Q G + ++ +DP + ++ LA ++ A+ LFL Sbjct: 83 GLMIALFISLPFCVLQITGNIIDNQRGATLSSSIDPINGVDTSELANFFNLFAVTLFLAN 142 Query: 141 NGHLWLISLLVDTFHT-LPIGGE-PLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 +G + + + ++ LP + P SN ++ A S +MLA PLI + L Sbjct: 143 DGVITTLEIYHHSYRLWLPFSMKFPSISNILTFISYAIS----KAVMLASPLIIIFLVTE 198 Query: 199 LALGLLNRMAPQLSIFVIG 217 + LGLL R APQL+ F I Sbjct: 199 IMLGLLGRYAPQLNPFSIA 217 >UniRef50_C5SN71 Flagellar biosynthetic protein fliR n=2 Tax=Caulobacteraceae RepID=C5SN71_9CAUL Length = 268 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 6/214 (2%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP----SLPANDVPVFSFFALWLAVQ 76 +RV ++ P L +++VP R++L A + T + P +PA P A L + Sbjct: 32 VRVGSVAILIPGLGDQAVPPRMRLSFAFVFTLMLVPVVQSQMPALP-PKLGAMA-GLIIH 89 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + +IG+ LG M+ A+ AGE++ LQ LSFA +PA + + ML L+L Sbjct: 90 EAVIGLMLGMLMRTFLGALAIAGEVVSLQTTLSFAQTANPAQAQPSTSIGTFLAMLGLVL 149 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 N H I+ + D++ P + +A + + F+ + + P++ L Sbjct: 150 IYATNLHHLFIAGMRDSYWVFPPMRPVMVGDATQLMIRTVGDTFMLAIQMTTPILVFGLI 209 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 +N+A G + R+ P IF P+++ +G+++ A Sbjct: 210 INVAAGFIGRIMPAFPIFFAVTPVSVLLGLAIFA 243 >UniRef50_D1ZYN3 Whole genome shotgun sequence assembly, contig_4233 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYN3_SORMA Length = 150 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 7/137 (5%) Query: 18 WPLLRVLALISTAPILSERSVPKRVKL----GLAMMITFAIAPSLPANDVPVFSFFALWL 73 + ++RV A AP+ ++P +V++ +A+++ A A ++P VFS Sbjct: 17 FTMVRVGAAFIVAPVFGAVAMPVQVRVLLSGAIAVLVLHAQAFAIPTE---VFSLTTFLS 73 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + L+G+A+GF +Q AFAA A E+IG+ MG+ FA VDP + P L + +L Sbjct: 74 IAAEGLVGLAIGFVLQIAFAAPLIAAEVIGMSMGIGFAAMVDPQNGAQSPALGTFLSVLL 133 Query: 134 LLLFLTFNGHLWLISLL 150 LLFL+ +GHL LI L+ Sbjct: 134 TLLFLSLDGHLILIDLI 150 >UniRef50_A6W8L5 Flagellar biosynthetic protein fliR n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L5_KINRD Length = 274 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 2/209 (0%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL-WLAVQQIL 79 +R A + AP + ++V +VK L++ + A+A L + VP AL VQQ + Sbjct: 20 VRSAAFLMLAPPFANKAVNGQVKALLSVGLGLAVAERL-RDSVPAVEPGALITAVVQQAV 78 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G +G + FAAV+ AG+++ L G A+ DP V ++ + L + Sbjct: 79 VGAVMGAFVALVFAAVQAAGDMLDLFGGFQMASAYDPLMQSQTAVFGKLYTWTSTALLVV 138 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 GHL ++ + ++ LP+ T+ + + ++ + +A PLI +L ++ Sbjct: 139 SGGHLLILQGFLRSYDVLPLDAGLDTGTVARVFTEGVAQLVISAVQIAAPLIAVLFLTDI 198 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGISL 228 LGLL+R+AP L++F + FP+ + + ++L Sbjct: 199 GLGLLSRVAPALNVFAMSFPVKILITLTL 227 >UniRef50_A3SFT0 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3SFT0_9RHOB Length = 251 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 12 WLNLYFWPLLRVLALISTA----PILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVF 66 +++ F+ V A I TA P E +P R +L LA++I+ ++ P P A+ +P Sbjct: 6 FISTLFFSFFVVFARIGTALMFMPGFGEVQIPVRPRLSLAVLISLSLLPLTPIASALPDS 65 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + A++L ++LIG+ +G + +A++ AG +G GL+ A S ++A Sbjct: 66 AVTAVFLLGAEVLIGLWIGLCARILLSALQFAGFQVGQVSGLANAFGPSFGSFEGATMVA 125 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 ++ M A+ + + H +I L+ ++ P G L A L A + +++ G + Sbjct: 126 TLLLMSAVTMIFVTDTHHLIIRALLASYQVFPPGQFVLADLADQILRVASASLYI-GTAI 184 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVI 216 A P + + LNL +GL NRM PQL +F + Sbjct: 185 AAPFFVMGVILNLGMGLANRMMPQLPVFFV 214 >UniRef50_B9KQI0 Type III secretion system inner membrane R protein n=5 Tax=Rhodobacter RepID=B9KQI0_RHOSK Length = 260 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ 76 F LRV A ++ P E S+P RV+L A+ T + P+L ++ VP++ +L + Sbjct: 23 FLVFLRVGAAMALLPPFGETSLPVRVRLAAALAFTAIVFPAL-SDRVPIYDG-SLAPLLA 80 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + +G+ LG +++ A++TAG I S A + PV+ I+ + L L Sbjct: 81 ETAVGLLLGASLRLFVLALQTAGTIAA--QATSLAQLFGSTAGEPQPVMTNILTLAGLAL 138 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI---FLNGLMLALPLITL 193 + H+ + L+ ++ LP P ++ T +L+ F G MLA+P + Sbjct: 139 AVVGGLHVQIALFLIQSYDILPAARLPDPADV---ATWGLTLVVKSFALGFMLAMPFVAA 195 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFP 219 N+ALG++NR PQL +F +G P Sbjct: 196 SFIFNVALGIVNRAMPQLMVFFVGAP 221 >UniRef50_C1ZEF5 Flagellar biosynthesis pathway, component FliR n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEF5_PLALI Length = 334 Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 29/247 (11%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIG 81 R LA S P +E S P + A ++ P+ P N + + + +++IG Sbjct: 94 RFLAESSNTPASAELSTPDDRVMTAA---EYSALPTPPEN-----LGQLVLVLLGELVIG 145 Query: 82 IALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFN 141 + LG +Q A ++ AG+II Q G +P +N +++ L ++FL Sbjct: 146 LFLGLGVQMVLAGLQMAGQIIDQQGGFGLGEVFNPDLQMNASQSGQLLFWLGTVIFLVLE 205 Query: 142 ---GHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM---------LALP 189 GHL ++ +V++F ++P+G A + G++ LN LM A P Sbjct: 206 PLGGHLVMLKSMVESFQSIPVG---------RAFWEPGTVELLNNLMQASFSLAIRFAAP 256 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 ++ ++ ++ A+G L+ PQ++I +GF L V + L+ L + F E F Sbjct: 257 IMLVMCLVDAAIGFLSHTVPQINIQAVGFSLKAMVSLLLLITLFSTSPAVIVNAFQETFF 316 Query: 250 LLADIIS 256 +L +S Sbjct: 317 VLRQGLS 323 >UniRef50_Q6MES5 Putative type III secretion inner membrane protein SctT n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MES5_PARUW Length = 280 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 8/208 (3%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPV-FSFFALWLAVQQIL 79 R+L +I+ AP R +P VK+ LA+ P L P+ F+ + +++ Sbjct: 32 RMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNLLLVLYFFKELF 91 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G+ LG+ + F V+ G +I Q G S DP L + +++ + LF Sbjct: 92 VGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFFM 151 Query: 140 FNGHLWLISLLVDTFHTLPIGGE------PLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 +G ++ ++ ++ LP +NSN + + K + + LA P + + Sbjct: 152 IDGPFMILDIISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALIM 211 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLT 221 +L + LG+ NR+APQ+ I +G PL Sbjct: 212 ILMTDFFLGIANRLAPQVQITFLGMPLK 239 >UniRef50_B5JK51 Bacterial export protein, family 1 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK51_9BACT Length = 256 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 9/242 (3%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAM---MITFAIAPSLPANDVPVF 66 L + L+ L RVL L AP+ S +S+P K+ LA M+ F + AN ++ Sbjct: 4 LEDITLFLLILTRVLGLFLAAPVFSHKSIPVIAKVTLAAAFAMMVFPMVDHEVANPASIW 63 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 S LW A +++ +G+ +G ++ F + A +I +++GL DP S + Sbjct: 64 SL-TLWFA-KELTVGLMMGIAIRMVFFVLDFASHVITVEIGLQPGPAFDPGSSSSQGNPL 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNA--FLALTKAGSLIFLNGL 184 + L+ L ++ + +F PIG LNS A F+ L A IF G+ Sbjct: 122 GTIIYFLGLMLLLSGSEYNMLRAFMRSFEIAPIGFFGLNSFAADFIILKTAD--IFRIGI 179 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ P++ + +NL L ++ P+L++F++ F + +G +++ + L+A + Sbjct: 180 LMGAPIVAVNFLVNLVFATLGKVVPKLNVFILSFSARIFLGTTVLTLTVGLLAHYAMAYI 239 Query: 245 SE 246 E Sbjct: 240 EE 241 >UniRef50_A5VVZ1 Flagellar biosynthetic protein fliR n=3 Tax=Brucella RepID=A5VVZ1_BRUO2 Length = 239 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 4/199 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW----LAVQQ 77 R+ A + P +S +P +V+L +A+ +FA+ P + V W L V + Sbjct: 21 RIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQPWTLFRLMVGE 80 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 + IG +G F A + ++ + +G S + + LA I+ AL LF Sbjct: 81 MFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSITENEPQATLATIVTFSALFLF 140 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 + HL + L++++ +P+ G A + T A S FL L +A P I + + Sbjct: 141 FVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRIAAPFIVFAILV 200 Query: 198 NLALGLLNRMAPQLSIFVI 216 N A+GL+N++ P + ++ I Sbjct: 201 NFAIGLVNKLTPAIPVYFI 219 >UniRef50_A3VS80 Flagellar biosynthesis pathway, component FliR n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VS80_9PROT Length = 256 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 6/218 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA-LWLAVQQILI 80 R+ A++ P L + ++P RV+L +++T I P + +P + L L V +++I Sbjct: 26 RLTAMLVLLPGLGQLAIPVRVRLMAGLVMTSTILPVILDRPLPALAISDPLVLIVFEVVI 85 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLS--FATFVDPASHLNMPVLARIMDMLALLLFL 138 G ALG+ + A+ AG I+ LS F ++ + P + ++ M LF+ Sbjct: 86 GAALGYGFRIFIWALSIAGTIVAQSASLSQLFGAGLNTEPN---PSVGLLLTMAGATLFM 142 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 T H+ + L+ +++ P+G P T F G+ L+LP + + N Sbjct: 143 TMEFHVRAVGLIAESYELFPLGELPRTDVLAEWATHRAMAAFALGVSLSLPFLLVNFLYN 202 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 + LG++N+ PQ+ + IG P + + L+A MP+I Sbjct: 203 IVLGMMNQAMPQMMVTFIGVPANVLAALLLLAVAMPMI 240 >UniRef50_D2R542 Type III secretion system inner membrane R protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R542_9PLAN Length = 277 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%) Query: 56 PSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVD 115 PS P N L LA + +L G+ALG + A ++ AG II G++ A + Sbjct: 62 PSPPEN----LMMLGLMLARESML-GLALGLAVMILLAGMQLAGSIISQMSGMTLADVAN 116 Query: 116 PASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKA 175 P ++P+ +++++ML+L +F + GH ++S L+DTF +P G A L Sbjct: 117 PTFDTSVPIFSQLLEMLSLAIFFSLGGHRLVMSALLDTFKFMPPGQATFPEEAVEMLATI 176 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIG 217 + F G+ A P I LL L + L++R PQL+ +G Sbjct: 177 FTHSFEIGIRAAAPAIISLLLAILVVALISRTLPQLNSVAVG 218 >UniRef50_UPI00016C3B59 flagellar biosynthesis protein FliR n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B59 Length = 254 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 21/250 (8%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMIT-FAIAPS------LPANDVPVFS--FFA 70 L R+ A ++ P+ + R+ P+ V+ G+ +++ F + P+ P V + Sbjct: 12 LARIGAFVAVMPLFAART-PRTVRAGMVVVLAAFYVGPAGAELAAAPPGSVREVDPLRYG 70 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L LA ++ LIG+A+GF R AGE + Q+GL+ + + PA + L + + Sbjct: 71 LVLA-REALIGVAMGFAFGLFLLPGRIAGEFVTQQIGLNISPQLGPAGGESGGPLTNVFE 129 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSLIFLNGLMLAL 188 L+FL +GH ++ +F LPIGG P L A + GL+LA Sbjct: 130 TAGALVFLLVDGHHIVLMAFHASFAALPIGGSVVPEAGPMVTGLASA----YEMGLLLAA 185 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 PL L L++ L ++ R APQL+I+ +GF +L V ++L+A L+ L+ F L + I Sbjct: 186 PLALCLFLLSITLAVMARAAPQLNIYSVGF--SLQVLVALIAGLV-LVPEFVTTL-TAIV 241 Query: 249 NLLADIISEL 258 D + +L Sbjct: 242 GRTGDALPKL 251 >UniRef50_C8WWG4 Type III secretion system inner membrane R protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG4_ALIAD Length = 258 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 16/249 (6%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DV---- 63 L NL+ R I APILS P K+ LA+ + PS+ A+ D+ Sbjct: 6 LEHFNLFLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVPDIATQP 65 Query: 64 -PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 P FAL + ++G+ LGF + F + AG+++ LQ+G++ A P Sbjct: 66 GPFVVDFAL-----EAVVGVVLGFVATWIFNTMNIAGQLVDLQIGMAVADLAMPGFGQQA 120 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 V + + ++ LLF+ G L S ++++F +PI L ++ + + L Sbjct: 121 GVFSSVYNVWFSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLM 180 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 G+ +ALP+ L ++ LL R PQ++ FV+ P L VG++ A +P+ Sbjct: 181 GVDVALPVFASLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTV----G 236 Query: 243 LFSEIFNLL 251 LF ++ NL+ Sbjct: 237 LFRQLLNLV 245 >UniRef50_Q28JK8 Flagellar biosynthetic protein FliR n=1 Tax=Jannaschia sp. CCS1 RepID=Q28JK8_JANSC Length = 256 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 17/246 (6%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITF----AIAPSLPAN 61 SE WL+ F LRV A P L E+ +P RV+LG A+ T A+ P L + Sbjct: 12 SEIWLATGIAVF---LRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVS 68 Query: 62 DV--PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V P+ +FF+ + + G+ +G +++ A++ AG I LS + A+ Sbjct: 69 AVIPPLTAFFS------EAIAGLIIGMALRYLVHALQVAGTIAAQSTSLS--QILGGATP 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P + I+ + L L + H+ L+ + ++ LP G P + S Sbjct: 121 DPLPAMGAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPFGNLPGPRDLAGWSVDQVSAS 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + LA P + L N+ALG++N+ PQL + +G P G+ L+ P I P Sbjct: 181 FSLAVSLAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPV 240 Query: 240 CEHLFS 245 H F Sbjct: 241 WLHAFE 246 >UniRef50_C6XF32 Flagellar biosynthesis protein FliR n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF32_LIBAP Length = 248 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 >UniRef50_A5G0E7 Type III secretion system inner membrane R protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0E7_ACICJ Length = 259 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 25/237 (10%) Query: 14 NLYFWPLL---RVLALISTAPILSERSVPKRVKLGLAMMITFAIAP-------SLPANDV 63 ++ F PLL R+ +L+ P + + P ++++GL++ +T +AP +P + + Sbjct: 8 DMVFGPLLIFIRISSLVMALPFMGAGNAPPQIRIGLSIALTAIVAPLIVSGTIGVP-SSI 66 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 PVF F L ++I++G++LG+ ++ AG+II QMGLS + N Sbjct: 67 PVFVFLVL----REIVVGLSLGWLTAAIMLSLPVAGQIISYQMGLSSVLLPNVEIGPNST 122 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLL--VDTFHTLP-----IGGEPLNSNAFLALT-KA 175 ++A + ++ L + F L+++ +L + +F +P IG + L +A Sbjct: 123 LVANALSVM--LPAVVFTTGLFMLPVLAIIRSFRVIPLTSTIIGAHLPPAGLLLGFAVRA 180 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAAL 232 S F+ L LA P + + L LGL++++AP + ++ + PL L G+ L+A L Sbjct: 181 VSAEFVTALHLAAPFLFIGLLWQAGLGLMSKVAPSMQVYFVAAPLQLLGGMFLLAIL 237 >UniRef50_A3W5F7 Flagellar biosynthetic protein FliR n=3 Tax=Rhodobacteraceae RepID=A3W5F7_9RHOB Length = 254 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 16/218 (7%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP--V 65 Q + WL+ + LRV +I P E+SVP R+K+ L T AP++ A D+P V Sbjct: 12 QEVLWLHALVF--LRVAPIIGLLPGFGEQSVPMRIKVVLVFAFTLIAAPAI-APDLPDHV 68 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + AL + + + L+G+ +G ++ A++ AG I LS + AS MP + Sbjct: 69 HAPSALTI-LSETLVGLIIGIGLRLFLMALQMAGSIAAQSTSLS--QILGNASLTPMPSI 125 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG----SLIFL 181 ++ + L + + H+ + L++ ++ P+ G S A+T+ G + F Sbjct: 126 GHLLATGGVALMMIMDLHVRVAELMILSYRVFPVQGVFKVS----AITQWGVSQIAHAFS 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFP 219 G MLA P + + + NL LG++NR PQ+ + +G P Sbjct: 182 LGFMLAAPFVLVSVLYNLTLGVINRAMPQMMVAFVGAP 219 >UniRef50_B3RAC7 SctT: non flagellar T3S system conserved inner membrane protein. fliR/mopE/spaR family n=1 Tax=Cupriavidus taiwanensis RepID=B3RAC7_CUPTR Length = 271 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 4/206 (1%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIG 81 R+L + P LS++++P + G+ + I ++P + V L L ++ IG Sbjct: 31 RLLTAFTVLPFLSQQAIPGVARNGIVLAIALFVSPGARIDLDAVAGGLWLVLIFKEAFIG 90 Query: 82 IALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFN 141 + LG F A++ GE+I Q G ATF DP + + ++ + LF Sbjct: 91 LLLGMAFGLFFVALQMIGELIDFQTGSGNATFFDPVTQQEDGPMENLLSHFGIALFAALG 150 Query: 142 GHLWLISLLVDTFHTLPI---GGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 G + + ++V++F P+ G E ++ A AG+L F + LA P++ LL+ + Sbjct: 151 GFIAMTGVIVESFAFWPVMSFGPEMSLASMGFANLYAGTL-FSWVVKLAAPILLLLVIVE 209 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTV 224 L L+ R PQ +F P+ ++V Sbjct: 210 LGFALIARFVPQFDVFQFAQPVKISV 235 >UniRef50_A6U663 Flagellar biosynthetic protein fliR n=7 Tax=Rhizobiales RepID=A6U663_SINMW Length = 250 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 3/216 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA---LWL 73 F R+ I P S VP +++L +A+ I+ AI P + + P + L+L Sbjct: 13 FAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYPQVTGKGHDYLYL 72 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + +G +G ++ ++ AG + + MG S D L ++ Sbjct: 73 VATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTAENQLTSLISFAG 132 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 L++ + H + + ++ +PIG + LT + F+ L LA PL+ Sbjct: 133 LMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFMIMLRLASPLVIY 192 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 L N+A+G++N++APQ+ ++ I P + G+ L+ Sbjct: 193 GLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLL 228 >UniRef50_D2TZW1 Type III secretion sytem SpaR,YscT,HrcT,EscT n=1 Tax=Arsenophonus nasoniae RepID=D2TZW1_9ENTR Length = 254 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 1/157 (0%) Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 L+ ++ IG+ +G M F GE I Q G S +DP + LA +++M Sbjct: 71 LSAVELFIGLTMGILMATPFWLASAIGEFIDNQRGASIGDMLDPTTGSESSSLASLINMF 130 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 + FL G + ++ +++++ LPIG P+N AL K + + + L+ PL+ Sbjct: 131 CVGWFLNQGGMIEFVATIIESYQQLPIGC-PINYVDLFALGKWLTRFIMLAITLSAPLLI 189 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 L L + LG+ + PQL+ F + L V L+ Sbjct: 190 ALFMLEIGLGVYSLFCPQLNAFSLSLTLKSIVAFGLL 226 >UniRef50_B8DMR4 Type III secretion protein SpaR/YscT/HrcT n=5 Tax=Desulfovibrio RepID=B8DMR4_DESVM Length = 278 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 9/247 (3%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAP----SLPANDVPVFSFFALW--LAV 75 R+ + AP L+ V ++++ L + P LP V + + L + Sbjct: 32 RLFMVAQVAPFLAGSVVTGQLRMVLVFACYLPVHPVILGQLPKGSVFDLTLLGHYGALVL 91 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 ++ L+G+ LG AF V++AG +I Q G S A DP S + + Sbjct: 92 KESLMGLVLGLLAGIAFWTVQSAGFLIDNQRGASMAEESDPMSGEQTTPTGAFLLQTMMY 151 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGG-EPLNSNAFLALTKAGSLIFLNGLM--LALPLIT 192 LF T L + LL ++ P+ PL + + L AG + +L M LA PL+ Sbjct: 152 LFYTSGAFLAFLGLLYASYEIWPVPSLAPLAWSIEVPLLFAGRVAWLMSHMVLLAGPLVV 211 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 L +++LGL+NR A QL+++V+ P+ V L+ +A LF+EI L Sbjct: 212 ACLLADISLGLVNRFASQLNVYVLAMPVKSAVASLLLVLYFGALAAKTPDLFAEIAADLQ 271 Query: 253 DIISELP 259 + LP Sbjct: 272 RLQGLLP 278 >UniRef50_A0RCA1 Flagellar biosynthetic protein n=70 Tax=Bacillus cereus group RepID=A0RCA1_BACAH Length = 253 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 20/246 (8%) Query: 17 FWPLLRVLALISTAPILSERSVPK--RVKLGLAMMITFAIAPSLPANDVPVFSFFALW-- 72 F+ R+ + + P S RS+P +V GLA+ IT A+ V V W Sbjct: 10 FFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSIT-------VADQVDVSHIKTTWDV 62 Query: 73 --LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 A QI+IG++L ++ + + AG I+ +GLS A+ D + +L+ I D Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + L++F++ G + ++ ++ +F + L ++ +L + + +ALPL Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL------- 243 + L +N L L+ + APQL+IF+ F + +T GI +A +P++ +++ Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNMTDVLLEE 242 Query: 244 FSEIFN 249 ++++FN Sbjct: 243 YTKLFN 248 >UniRef50_Q12T87 Type III secretion system inner membrane R protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T87_SHEDO Length = 261 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 12/224 (5%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAI-----APSLPAN 61 EQ+L L L++ + V L P+ +P ++ + +I A+ AP++ Sbjct: 16 EQYLKVLGLFYCRVGIVFWLPLVGPM---SRIPTSIRFIIVNVIVIALFSLQGAPAVIEV 72 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 D+ S+ L LA++ I GI + + G I +Q+GL + +P S Sbjct: 73 DLNTRSYLTL-LAIEFI-TGITFSLILAVPAVVLLFFGRAIDMQIGLGASGIFNPTSQTQ 130 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +L + AL LF + HL ++ +L+++ LP+G + N A + + S F+ Sbjct: 131 DSLLGVLFSFAALTLFWSLGLHLDVLKILIESIKVLPLG-QTRNVEA-MVFIEYFSTAFV 188 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 GL+L P+I +L +++ G++++ PQ+SI+ + PL + +G Sbjct: 189 LGLILFAPVIIMLFIVDICSGIISKSMPQMSIYFVIMPLKIMIG 232 >UniRef50_B1T8E1 Type III secretion system inner membrane R protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T8E1_9BURK Length = 252 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 6/220 (2%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALWLAVQQI 78 LRV L+ AP ++ VP R+++ L + + A+A LPA + P + A+ ++ Sbjct: 18 LRVGPLVMFAPPFAQLRVPLRIRVCLVLALAGALATPLPAQLRNAPAMLVAS---AISEL 74 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 +G L F +Q AFAA+ AG + +Q G AT +DP S P+ ++ + A + Sbjct: 75 ALGFTLAFPLQAAFAALSFAGRALDVQAGFGLATVIDPGSRSQAPLFGTLLTLGAGAICF 134 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 HL L+ L+ + +P G + S+ + G ++ + +A ++ L L ++ Sbjct: 135 ASGAHLELLRLVAASIERMPPGTARIVSSPQAFIGYFGRVMGIGIGAVAAVMLALFL-ID 193 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 L++ L+R PQL+ ++G + I + A + L+ P Sbjct: 194 LSIAFLSRTLPQLNALMLGLQVKAIAAIVVTALSIGLLGP 233 >UniRef50_B8EL38 Type III secretion system inner membrane R protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EL38_METSB Length = 249 Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 10/215 (4%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQIL-- 79 R+ A + P +S +P RV+L + IT + P L P S + ++ VQ IL Sbjct: 16 RIGACLMIMPGISSARIPVRVRLFVGFAITLGLTPILSDEVGPKISAESPFILVQTILSE 75 Query: 80 --IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 IG +GF + F A+ I + +GLS + P + ++ + AL+LF Sbjct: 76 SLIGGLIGFLGRIFFGALDALANAIAMAIGLSSPLAPPTDDNEPAPAIVSLISLGALVLF 135 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI---FLNGLMLALPLITLL 194 N H ++ L+ ++ P+ G A L L + G+ + F L ++ P I Sbjct: 136 FLTNLHWEVLRGLLASYSVWPVSGL---FEARLGLVEIGNSLARSFALALRVSSPFIVYA 192 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 L +NLA+G+ +R APQ+ I+ I P G+ L+ Sbjct: 193 LIVNLAIGIASRFAPQIPIYFITVPAVAAGGLFLL 227 >UniRef50_B4U883 Type III secretion system inner membrane R protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U883_HYDS0 Length = 258 Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 4/234 (1%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL-AVQQIL 79 LR+ +++ API + +P K+ + + ++ P V SF L L A+++ Sbjct: 18 LRISSIVFLAPIFGD--LPNSFKIFFVIAFSVSLYYYNPVKPVYTDSFIILTLMALKEFS 75 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G + ++F GE + +GLS AT ++P N +L + LF Sbjct: 76 LGFIISLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMG-NSTILGTYFSYFFMGLFAA 134 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 +G ++ +L ++ ++P+G L + + F LALP+I + L +N+ Sbjct: 135 SSGFEYIYFILSESLKSIPLGVFDLYNMRPEFILNIFYKSFYTAFQLALPMIAIGLVMNI 194 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 L +NR+ PQ+++F++G PL +G+ + + PL+ +F F + + Sbjct: 195 ILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFEHYFKFMLE 248 >UniRef50_Q16DQ9 Flagellar biosynthetic protein FliR n=5 Tax=Rhodobacteraceae RepID=Q16DQ9_ROSDO Length = 256 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 20/234 (8%) Query: 7 EQWLSWLNLYFWP----LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 +++ +LN W RV AL + P E+++ RVKL A+ T +AP+LP Sbjct: 5 QEFFPFLNSAIWHGFVVFCRVAALAAVLPAFGEQTLSARVKLAAALAFTVIVAPALPIIP 64 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLS---FATFVDPASH 119 P ++ + +++ G+A+G ++ A++TAG I LS VDP Sbjct: 65 APGSIGAVSFVILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLSQVLGGAAVDP--- 121 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG----GEPLNSNAFLALTKA 175 +P + I+ + L L + H+ + L++ ++ +P+G L+ + A Sbjct: 122 --LPAMGYILVIAGLALAVMAGLHVKVAQLIILSYDFMPVGRFANAADLSEWGTSQVAHA 179 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229 SL F LA P + L + N ALG +NR PQL + +G P+ G++L+ Sbjct: 180 FSLAF----TLAAPFVILSVLYNFALGAINRAMPQLMVAFVGAPVITLGGLALL 229 >UniRef50_A1UTW5 Flagellar biosynthetic protein fliR n=34 Tax=Rhizobiales RepID=A1UTW5_BARBK Length = 265 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 6/223 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-----NDVPVFSFFALWLAVQ 76 RV A + P +S +P +V+L +A+ + I P + + P F+ F L Sbjct: 31 RVGACLMLMPGVSSIRIPVQVRLFIAVSFSLIILPMVADFFKDFGEKPDFALFVRALC-S 89 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 ++LIG+ G A++ II + MG S + +A ++ ++ ++L Sbjct: 90 EMLIGVTFGVIAHVYLWALQFMATIIAMSMGYSGQPGHNVIDSTPETQIAHLLVLVGVML 149 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 F + H++ I L+ ++ + P A + A S FL L +A P I + Sbjct: 150 FFASDLHMFAIRGLLASYDVVSPVFIPNPEAALIDYRDALSKAFLTTLRIAAPFIVYAVL 209 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +N+A+GL+N++ P + ++ I P + G+ L+ +MP I F Sbjct: 210 VNIAVGLVNKLTPNIPVYFISLPFVVAGGLFLLYFIMPEILNF 252 >UniRef50_Q058C0 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q058C0_BUCCC Length = 266 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 4/195 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFALWLAVQQIL 79 RV +L+ I + K+ + +++ + P S+ N+ FF ++L QI Sbjct: 23 RVFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVYKNNFCTIDFFLIFL--NQIF 80 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 IGI LGF ++ + GEI LQ+GLS F + + + + + L F Sbjct: 81 IGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIFFLFTFFI 140 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 N HL L+ LL+ +F P+ F + ++IF + LP++ L L + Sbjct: 141 CNMHLKLLVLLIHSFEIYPLNNFIFYKKIFFYIVNFLNIIFFQSVSFILPILFFFLILYI 200 Query: 200 ALGLLNRMAPQLSIF 214 +N++ P++S F Sbjct: 201 TYIFINKLIPKVSFF 215 >UniRef50_B5Y7F5 Bacterial export protein, family 1 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F5_COPPD Length = 248 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 9/215 (4%) Query: 14 NLYFWPLL-RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 L FWP+ R+L + PIL R R K L+ I+ P A S + Sbjct: 5 TLGFWPVFFRLLGFVLATPILPTRFFNLRTKAVLSFAISLISVPDFVAVLSLQTSVSWVQ 64 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + + + +G+ LG + A+ AG++ + G T +DP + + PV+ + ++ Sbjct: 65 IYITEFALGLLLGIFSGIVYWALVFAGDLWDIMSGFQMMTAIDPFTSVPQPVMTQFFSLM 124 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG---SLIFLNGLMLALP 189 A +F+ G I+L++ ++ +P G S LAL++ + +F GL +A+P Sbjct: 125 AAAVFVVGGGLDSFIALVIMSYRLIPAG-----SFIHLALSEPALFLTRVFSLGLAVAIP 179 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTV 224 ++ L++ L +G++++ A +FV+ PL V Sbjct: 180 IVVLVILLEFIMGVVSKGASGFPVFVVWIPLQTAV 214 >UniRef50_Q2SH54 Type III secretory pathway, component EscT n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH54_HAHCH Length = 261 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 16/247 (6%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKR-VKLGLAMMITFAIAPSLPAN-DVPVFSFFALW 72 ++F R+LA+ P LS++S+ ++ G+A + P + D L Sbjct: 12 VFFMSSARMLAMFMMLPFLSKQSLGGAMIRNGVAASFSLITYPLVEHGLDAQTLDGLHLL 71 Query: 73 LA-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L V+++ IG+A+GF + F A+ + G I Q G + A+ ++P S L ++ Sbjct: 72 LIIVKEVGIGLAMGFVLVMPFWAIESVGFFIDNQRGATMASALNPLSGSQTSPLGILLTQ 131 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPI----GGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + LF L ++ L ++ P+ P++ AF L + +++ L ++L Sbjct: 132 SLVTLFFISGTFLLMLYALYKSYSVWPVFEFLPSFPVSGPAFF-LAQLDTMMRLT-VLLG 189 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ ++ L L++R APQL++F++ PL VG+ AL+ + A F FSE Sbjct: 190 APVVIVMFLTEFGLALISRFAPQLNVFILAMPLKSAVGL----ALLCVYAGFVIRYFSE- 244 Query: 248 FNLLADI 254 LLADI Sbjct: 245 --LLADI 249 >UniRef50_Q7NUT8 Type III secretion system EscT protein n=5 Tax=Proteobacteria RepID=Q7NUT8_CHRVO Length = 257 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 3/216 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKR-VKLGLAMMITFAIAPSLPANDVPVFS 67 W WL + +LR L + P+ S ++ ++ L +MI + P P +P Sbjct: 4 WTQWLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPVYPQWQLPAAG 63 Query: 68 FFA-LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + LA +I IG+ +GF F + AG +I G S A+ ++P + Sbjct: 64 AWGYVLLAAGEICIGLMIGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPLLGQQSSLFG 123 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLA-LTKAGSLIFLNGLM 185 + + +LFL G L+ + ++ TLP G S L+ + L++ L Sbjct: 124 LLFTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYELCLR 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLT 221 ++P I ++L +++ALGL+NR A QL++F + P+ Sbjct: 184 FSMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIK 219 >UniRef50_Q1GCD0 Flagellar biosynthetic protein fliR n=8 Tax=Rhodobacterales RepID=Q1GCD0_SILST Length = 259 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 10/226 (4%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILI 80 LR+ A+ S E+ +P +++L ++ T +AP+LP +P L ++++ Sbjct: 26 LRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPMPQTVMQYAGLMATEVVV 85 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G+ALG ++ ++TAG I LS + A MP L ++ + + + + Sbjct: 86 GLALGLGLRMFMHMLQTAGSIAAQCTSLS--QVLGGAGADPMPALGAVLWISGIAVAVML 143 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG----SLIFLNGLMLALPLITLLLT 196 + H+ L++ ++ P+G P S L++ G S F LA P + + Sbjct: 144 DFHIHAAQLMIRSYDLFPVGIFPSASG----LSEWGVHRVSATFAQAFTLAAPFLITAVV 199 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 NL LG++NR QL + +G P+ G++++ P++ H Sbjct: 200 YNLTLGVINRAMTQLMVVFVGAPVITFGGLAILMIGAPMMLEVWGH 245 >UniRef50_P96068 Secretion system apparatus protein ssaT n=29 Tax=Enterobacteriaceae RepID=SSAT_SALTY Length = 259 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 4/181 (2%) Query: 45 GLAMMITFAIAPSLPANDVPVF---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEI 101 G+ M +TF I P + + + + L L +++IG ++GF F AV AG + Sbjct: 42 GVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFL 101 Query: 102 IGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG 161 + G + T + + + ++F G +++++L +++ LP G Sbjct: 102 LDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGR 161 Query: 162 EPLNSNAFLALTKAG-SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPL 220 L FL +A ++ + +LP I ++ +LALGLLNR A QL++F PL Sbjct: 162 TLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPL 221 Query: 221 T 221 Sbjct: 222 K 222 >UniRef50_A4EG21 Flagellar biosynthetic protein FliR n=4 Tax=Rhodobacteraceae RepID=A4EG21_9RHOB Length = 259 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 6/207 (2%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALWLAVQQIL 79 R+ A+++ P ++ VP RV+L LA+M T +AP++ + VP + + L Sbjct: 24 RIGAVMAVLPAFGDQPVPTRVRLVLAVMFTLIVAPAVAPSFETVPTALLAGFGILAMEAL 83 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 G+ G ++F ++ AG I LS F A+ P + ++ + L Sbjct: 84 TGLFFGIFLRFFILVLQIAGSIAAQSTSLS-QIFGGTAAVDPQPAIGHMLVVSGTALAAL 142 Query: 140 FNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 H+ S ++ T+ +P G G + A + + + G F G MLA P + L N Sbjct: 143 SGLHIQAASYMIHTYTLVPFGAGLERSLVAEVGVAEVGR-TFGFGFMLAAPFLIASLIYN 201 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVG 225 + LG++NR PQL + +G P LT G Sbjct: 202 VVLGVINRAMPQLMVSFVGAP-ALTAG 227 >UniRef50_D0G8P1 Conserved domain protein n=1 Tax=Clostridium botulinum Bf RepID=D0G8P1_CLOBO Length = 150 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--SFFALWLAVQQI 78 R+ S PI + P K+ LA++I + + S+ + S ++ V +I Sbjct: 15 FRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSIDIRSINTINNSTALIFNIVNEI 74 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 L G LG+ AF R AG ++ LQ+G + T DP+++ N+ L RI+ + ++F Sbjct: 75 LAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILYWFSTIVFF 134 Query: 139 TFNGHLWLIS 148 +GH LI Sbjct: 135 LIDGHHMLIK 144 >UniRef50_Q2T714 Type III secretion system protein BsaY n=30 Tax=Burkholderia RepID=Q2T714_BURTA Length = 251 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 12/155 (7%) Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 +A+ + G+ LG + F GE+I Q G + + +DPA+ + LA + + Sbjct: 71 IALTEAAAGLVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLF 130 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL---IFLNGLMLALP 189 FL G L ++ L ++ T+P G P +++ L + G+L + +GL LA P Sbjct: 131 YAAAFLQQGGMLTIVGALESSYATVP-AGAPFSAD----LPRVGALLTDLVAHGLALAAP 185 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTV 224 ++ ++ + LGL +R PQ++ F L+LTV Sbjct: 186 VLIVMFVTDALLGLFSRFCPQVN----AFSLSLTV 216 >UniRef50_B6IS88 Flagellar biosynthetic protein fliR n=1 Tax=Rhodospirillum centenum SW RepID=B6IS88_RHOCS Length = 254 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 2/154 (1%) Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 L V +IL+G+ +G + A+ T G +I Q+GL+ A +PA + ++ + Sbjct: 73 LVVSEILVGLFIGTLARVLLTALETGGFLIANQLGLAAAQAFNPALAAPGNPIGALLGIG 132 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTL-PIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 A+++ + H LI +VD++ P G PL +A L + + F G+ LA+P Sbjct: 133 AVVVIFATDLHHMLILAVVDSYTLFSPADGLPLG-DATEHLAQTVNTSFAIGVQLAVPFF 191 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 + L LGL+ R+ PQ+ +F +G P+ + +G Sbjct: 192 VIGFLFYLGLGLVARLVPQVQVFFVGLPIQIAIG 225 >UniRef50_B2IG71 Flagellar biosynthesis protein FliR n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IG71_BEII9 Length = 251 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%) Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 L + + L+G +GF+ + FAA+ T + + +G++ +PVL+ ++ + Sbjct: 73 LMISESLMGFFIGFSARIFFAALETTANAMAMMIGMTNVLGAPVNEEEPLPVLSALVTLS 132 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG---SLIFLNGLMLALP 189 A +L + H ++ LV ++ +P+ + NA L L + S F LA P Sbjct: 133 ATVLLFIMDLHWEILRGLVGSYKAVPVID---HFNARLDLVQVADSLSKAFFLSFRLAGP 189 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAA 231 I + +NLA+GL+N+M PQ+ I+ I P L G+ L A Sbjct: 190 FIIFSIIVNLAVGLINKMIPQIPIYFITMPFVLIGGLFLFFA 231 >UniRef50_Q9KKH0 YsaT n=8 Tax=Enterobacteriaceae RepID=Q9KKH0_YEREN Length = 266 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 11/184 (5%) Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 ++ IG+ L F + F GE+I Q G + + +DPA+ + ++ ++ + +++ Sbjct: 85 ELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGVESSEMSVLVSHIVVMI 144 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 FLT G L +++ LP + ++ L L + + + + ++LA P++ L Sbjct: 145 FLTQGGMYQLAQTFAESYRLLPFAAGFSHFDS-LPLGRWLNQLVVQAIVLAAPILVTLFI 203 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIIS 256 +ALGL +R PQL+ F + LT+ I+ M L+ + +E+ +L ++IS Sbjct: 204 TEVALGLYSRFCPQLNAFSLS--LTIKSAIAFMVFLL--------YFQNEVPTILINMIS 253 Query: 257 ELPL 260 PL Sbjct: 254 LSPL 257 >UniRef50_B1T6S9 Type III secretion system inner membrane R protein n=2 Tax=Burkholderia RepID=B1T6S9_9BURK Length = 263 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 11/185 (5%) Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS-HLNMPVLARI 128 A+++AV+++ +G G M FA R G ++ Q GL DP S + + A Sbjct: 69 AVFIAVRELALGALTGIFMLPLFAVPRAVGTLVDQQAGLMSIQLFDPTSAERSATIFADA 128 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLA--LTKAGSLIFLNGLML 186 + AL +F+ G L L + P+ L S + T+ +F + + Sbjct: 129 FEQTALFMFVVAGGFGVLAELYAASHRFWPVAATDLPSIEHVTDLATRGVGAMFDSAIRY 188 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM--PLIAPFCEHLF 244 A P + L+ L +GL+ R APQL++ LT +V + L+A L+ ++ PF F Sbjct: 189 AAPFVATLILLEYGIGLIGRAAPQLNV------LTTSVALKLVATLLLVAIVGPFFVDAF 242 Query: 245 SEIFN 249 F+ Sbjct: 243 GNAFD 247 >UniRef50_A3D417 Type III secretion protein SpaR/YscT/HrcT n=35 Tax=Gammaproteobacteria RepID=A3D417_SHEB5 Length = 266 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 9/151 (5%) Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 +++++G+ LGF F A+ AG +I G S +T ++P L + + + + Sbjct: 80 KEMIVGVLLGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTV 139 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIG-----GEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 LFL G +L++ L ++ LP G +PL + + L+ L A+P Sbjct: 140 LFLVSGGFNFLLTALYQSYQQLPPGFNLTLAQPL----MVFIAHEWQLMCQLCLSFAMPA 195 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLT 221 + +++ +++ALGL+NR A QL++F + P+ Sbjct: 196 MVIMILVDVALGLVNRSAQQLNVFFLSMPIK 226 >UniRef50_B6IQA3 Flagellar biosynthesis protein FliR n=1 Tax=Rhodospirillum centenum SW RepID=B6IQA3_RHOCS Length = 251 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 6/215 (2%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIA---PSLPANDVPVFSFFALWLAVQ 76 L+RV A +S P E +VP R ++ A+ + A+A P LPA P L V Sbjct: 18 LVRVGAALSMLPGFGEMAVPMRTRMAAALALALALAAAVPGLPAVP-PAGPGELLRHIVG 76 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL-NMPVLARIMDMLALL 135 + + G +G + FAA++ AG+II LS F P + VL + M L+ Sbjct: 77 EAMAGAVIGIGARILFAALQIAGQIIAQSASLS-NIFALPGTGFEGGSVLGAYLMMGGLV 135 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L + H +I L+D++ +P P + + +L F + + P + L L Sbjct: 136 LVFVTDLHHAMIRALLDSYQLMPAATIPDPRSLGKLTAETVNLSFRLAVQFSAPFLLLGL 195 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMA 230 N+ LGL+NR P ++F +G P+++ G ++A Sbjct: 196 AYNVGLGLVNRAMPHFAVFFVGLPVSILGGFIVLA 230 >UniRef50_P0A1M6 Surface presentation of antigens protein spaR n=7 Tax=Shigella RepID=SPAR_SHIFL Length = 256 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 +L ++I++G+ L F + F G II Q G + ++ +DPA+ ++ LA+ ++ Sbjct: 73 FLMFKEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNL 132 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLNGLMLALP 189 + ++FL G ++++ + +++ P+ + SN LT S ++LA P Sbjct: 133 FSAVVFLYSGGMVFILESIQLSYNICPLFSQCSFRISNILTFLTLLAS----QAVILASP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 ++ +LL + LG+L+R APQ++ F ++LT+ SL+A + I Sbjct: 189 VMIVLLLSEVLLGVLSRFAPQMN----AFSVSLTIK-SLLAIFIIFIC 231 >UniRef50_Q256E2 Type III secretion flagellar biosynthesis inner membrane protein n=13 Tax=Chlamydiaceae RepID=Q256E2_CHLFF Length = 289 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 30/203 (14%) Query: 31 PILSERSVPKRVKLGLAMMITFAIAPSL-----PAN--DVPVFSFFALWLAVQQILIGIA 83 P L + P +K+G+A+ I P + AN D +F F L ++++ IG Sbjct: 47 PFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDIFYF----LIIKELCIGTL 102 Query: 84 LGFTMQFAFAAVRTAGEIIGLQMGL-------SFATFVDPASHLNMPVLARIMDMLALLL 136 +GF + F F A ++AG I Q G+ S + + H + Sbjct: 103 IGFILAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPH------GIFYHYFVTIA 156 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGG------EPLNSNAFLALTKAGSLIFLNGLMLALPL 190 F GH ++++L+ T +PI L++ ++AL K L + + L+ P Sbjct: 157 FWLSGGHRIVLTILLQTLEVIPIHKFLPAEMMSLDAPVWIALIKMCQLCLVMTIQLSAPA 216 Query: 191 ITLLLTLNLALGLLNRMAPQLSI 213 +L +L LG++NRMAPQ+ + Sbjct: 217 AVAMLMSDLFLGIINRMAPQVQV 239 >UniRef50_C9NP55 Type III secretion protein SpaR n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NP55_9VIBR Length = 259 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 14/240 (5%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV--PVFSFF 69 WL L RVL ++ P+ S R + ++ G+A + IAP + +D + S Sbjct: 12 WLKTLSVALARVLPIVIMVPLFSSRELKGVIRYGVAFALCMFIAPLIYGDDALHTMASNQ 71 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA-SHLNMPVLARI 128 +L ++++++GI +G M F + G + Q G +P S ++ P L+ + Sbjct: 72 LSFLLLKELVLGIVIGALMAMPFWLFDSVGALFDNQRGALIGGQFNPLLSGVSSP-LSHM 130 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN-SNAFLALTKAG-----SLIFLN 182 + A+++ + G +++L+DT PL + AF S+ F Sbjct: 131 LQQCAIIVLIEVVG----VNVLLDTIWNSYRAWPPLRWTPAFSPDMNQQWLANISITFTK 186 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 ++ A PLI ++L + A+ LL +PQ+ +FV+ P+ VG++++ + ++ F E Sbjct: 187 MILYAAPLIVVMLFIEFAMALLGLYSPQMQVFVLSIPIKCLVGMAMLTIYLSVLLRFMEQ 246 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P54702 Flagellar biosynthetic protein fliR n=162 Tax=En... 197 3e-49 UniRef50_Q97H65 FliR/FlhB fusion protein n=1 Tax=Clostridium ace... 193 5e-48 UniRef50_A5I580 Flagellar biosynthetic protein n=19 Tax=Bacteria... 186 9e-46 UniRef50_C6P5I0 Flagellar biosynthetic protein fliR n=1 Tax=Side... 182 1e-44 UniRef50_C5RFV5 Flagellar biosynthetic protein FlhB n=1 Tax=Clos... 181 2e-44 UniRef50_B2TLW3 Flagellar biosynthetic protein FliR/FlhB n=6 Tax... 176 6e-43 UniRef50_Q3SIG3 Flagellar biosynthetic protein fliR n=41 Tax=Bet... 176 9e-43 UniRef50_C9XJ38 Flagellar export protein n=7 Tax=Bacteria RepID=... 176 9e-43 UniRef50_B2AIF6 Flagellar biosynthetic protein fliR n=24 Tax=Pro... 176 1e-42 UniRef50_C6IVX3 Flagellar biosynthetic protein fliR n=2 Tax=Baci... 175 1e-42 UniRef50_A6SXX2 Flagellar biosynthetic protein fliR n=3 Tax=Oxal... 175 1e-42 UniRef50_A6M184 Flagellar biosynthetic protein FlhB n=4 Tax=Bact... 175 1e-42 UniRef50_C5S861 Flagellar biosynthetic protein fliR n=1 Tax=Allo... 172 1e-41 UniRef50_Q1QW39 Flagellar biosynthetic protein fliR n=1 Tax=Chro... 170 4e-41 UniRef50_Q47I14 Flagellar biosynthetic protein fliR n=1 Tax=Dech... 170 5e-41 UniRef50_A1U244 Flagellar biosynthetic protein fliR n=8 Tax=Gamm... 169 1e-40 UniRef50_Q0AEE8 Flagellar biosynthetic protein fliR n=5 Tax=Beta... 168 1e-40 UniRef50_A4BIP6 Flagellar biosynthetic protein fliR n=1 Tax=Rein... 168 1e-40 UniRef50_A1WCC7 Flagellar biosynthetic protein fliR n=8 Tax=Burk... 168 1e-40 UniRef50_Q1GZV4 Flagellar biosynthetic protein fliR n=3 Tax=Meth... 168 2e-40 UniRef50_B2A364 Flagellar biosynthetic protein fliR n=1 Tax=Natr... 166 5e-40 UniRef50_B8CYQ1 Flagellar biosynthetic protein fliR n=1 Tax=Halo... 166 6e-40 UniRef50_A3DCP2 Flagellar biosynthetic protein fliR n=3 Tax=Clos... 166 7e-40 UniRef50_Q4ZQU8 Flagellar biosynthetic protein fliR n=20 Tax=Pse... 166 8e-40 UniRef50_D0KYN9 Flagellar biosynthetic protein fliR n=1 Tax=Halo... 164 3e-39 UniRef50_A1WUA7 Flagellar biosynthetic protein fliR n=3 Tax=Ecto... 164 4e-39 UniRef50_Q485K9 Flagellar biosynthetic protein fliR n=8 Tax=Alte... 163 5e-39 UniRef50_B8I3N6 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 163 6e-39 UniRef50_Q21IP9 Flagellar biosynthetic protein fliR n=2 Tax=Alte... 162 7e-39 UniRef50_B2UJU2 Flagellar biosynthetic protein fliR n=6 Tax=Rals... 162 7e-39 UniRef50_Q3V7I9 Flagellar biosynthetic protein fliR n=7 Tax=Vibr... 162 9e-39 UniRef50_B9NJ47 Predicted protein n=6 Tax=cellular organisms Rep... 162 1e-38 UniRef50_P35537 Flagellar biosynthetic protein fliR n=20 Tax=Bac... 162 1e-38 UniRef50_Q2RKD3 Flagellar biosynthetic protein fliR n=1 Tax=Moor... 161 2e-38 UniRef50_A5D0I0 Flagellar biosynthetic protein fliR n=1 Tax=Pelo... 161 2e-38 UniRef50_Q7NTD4 Flagellar biosynthetic protein fliR n=1 Tax=Chro... 159 8e-38 UniRef50_B9Z788 Flagellar biosynthetic protein fliR n=1 Tax=Luti... 159 9e-38 UniRef50_A1HN22 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 159 9e-38 UniRef50_Q12PK2 Flagellar biosynthetic protein fliR n=8 Tax=Gamm... 159 9e-38 UniRef50_A1K939 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 159 9e-38 UniRef50_C1DAZ1 Flagellar biosynthetic protein fliR n=1 Tax=Lari... 158 2e-37 UniRef50_A6W0V6 Flagellar biosynthetic protein fliR n=2 Tax=Mari... 158 2e-37 UniRef50_C6NWP1 Flagellar biosynthetic protein fliR n=1 Tax=Acid... 158 2e-37 UniRef50_B8GQZ8 Flagellar biosynthetic protein fliR n=2 Tax=Thio... 157 3e-37 UniRef50_A6GTX6 Flagellar biosynthetic protein fliR n=1 Tax=Limn... 157 5e-37 UniRef50_Q31HN5 Flagellar biosynthetic protein fliR n=1 Tax=Thio... 156 6e-37 UniRef50_Q1N2V1 Flagellar biosynthetic protein fliR n=1 Tax=Berm... 156 6e-37 UniRef50_B5EEM8 Flagellar biosynthetic protein fliR n=2 Tax=Geob... 156 7e-37 UniRef50_A4SI10 Flagellar biosynthetic protein fliR n=4 Tax=Gamm... 155 2e-36 UniRef50_C8W1H1 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 155 2e-36 UniRef50_Q3J976 Flagellar biosynthetic protein fliR n=3 Tax=Gamm... 154 2e-36 UniRef50_A5F6D9 Flagellar biosynthetic protein fliR n=62 Tax=Vib... 154 2e-36 UniRef50_UPI00016952B2 flagellar biosynthesis protein FliR n=1 T... 154 2e-36 UniRef50_C0ZF83 Flagellar biosynthetic protein fliR n=1 Tax=Brev... 154 3e-36 UniRef50_Q2RZE7 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 154 3e-36 UniRef50_C6BYP0 Flagellar biosynthetic protein fliR n=4 Tax=Desu... 154 3e-36 UniRef50_UPI0001BC2FF2 flagellar biosynthetic protein FliR n=1 T... 153 5e-36 UniRef50_B3EAW1 Flagellar biosynthetic protein fliR n=7 Tax=Desu... 152 7e-36 UniRef50_C8WYW7 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 152 8e-36 UniRef50_B8CKZ1 Flagellar biosynthetic protein fliR n=22 Tax=Gam... 152 9e-36 UniRef50_Q1IR58 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 152 1e-35 UniRef50_A4J751 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 152 1e-35 UniRef50_A4Y0Q5 Flagellar biosynthetic protein fliR n=1 Tax=Pseu... 151 2e-35 UniRef50_Q3V7F9 Flagellar biosynthetic protein fliR n=5 Tax=Legi... 151 2e-35 UniRef50_B8FTQ3 Flagellar biosynthetic protein fliR n=2 Tax=Desu... 151 2e-35 UniRef50_Q1YV75 Flagellar biosynthetic protein fliR n=1 Tax=gamm... 151 3e-35 UniRef50_A8U5W1 Flagellar biosynthetic protein fliR n=1 Tax=Carn... 151 3e-35 UniRef50_C4V4A3 Flagellar biosynthetic protein fliR n=3 Tax=Sele... 150 4e-35 UniRef50_A4XIZ3 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 149 1e-34 UniRef50_Q2ITJ3 Flagellar biosynthetic protein fliR n=15 Tax=Bra... 148 1e-34 UniRef50_Q3V824 Flagellar biosynthetic protein fliR n=4 Tax=Baci... 148 2e-34 UniRef50_A6TRN9 Flagellar biosynthetic protein fliR n=2 Tax=Alka... 148 2e-34 UniRef50_B3PF02 Flagellar biosynthetic protein fliR n=1 Tax=Cell... 147 3e-34 UniRef50_C7RLB3 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 147 3e-34 UniRef50_B6AMB3 Flagellar biosynthetic protein fliR n=1 Tax=Lept... 147 3e-34 UniRef50_Q5DY35 Flagellar biosynthetic protein fliR n=37 Tax=Ent... 147 4e-34 UniRef50_B1I5J9 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 147 5e-34 UniRef50_B9KJE3 Flagellar biosynthetic protein fliR n=4 Tax=Rhod... 147 5e-34 UniRef50_C6D2V4 Flagellar biosynthetic protein fliR n=1 Tax=Paen... 146 5e-34 UniRef50_Q0AYL9 Flagellar biosynthetic protein fliR n=1 Tax=Synt... 146 6e-34 UniRef50_A3V236 Flagellar biosynthetic protein fliR n=3 Tax=Rhod... 146 6e-34 UniRef50_C7I0T6 Flagellar biosynthetic protein fliR n=1 Tax=Thio... 146 6e-34 UniRef50_B0MPC9 Putative uncharacterized protein n=1 Tax=Eubacte... 146 9e-34 UniRef50_Q2BJ96 Flagellar biosynthetic protein fliR n=1 Tax=Nept... 146 9e-34 UniRef50_C8WBS9 Flagellar biosynthetic protein fliR n=3 Tax=Zymo... 146 1e-33 UniRef50_C1A548 Flagellar biosynthetic protein FliR n=1 Tax=Gemm... 145 2e-33 UniRef50_C6HWM1 Flagellar biosynthesis protein FliR n=1 Tax=Lept... 144 2e-33 UniRef50_UPI0001C312BD flagellar biosynthetic protein FliR n=1 T... 144 3e-33 UniRef50_A4YB60 Flagellar biosynthetic protein fliR n=18 Tax=Gam... 144 3e-33 UniRef50_A9KNE1 Flagellar biosynthetic protein fliR n=1 Tax=Clos... 144 3e-33 UniRef50_C4G685 Flagellar biosynthetic protein fliR n=1 Tax=Abio... 144 4e-33 UniRef50_B8FK33 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 143 5e-33 UniRef50_A8F4V7 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 142 9e-33 UniRef50_C0C1N5 Flagellar biosynthetic protein fliR n=1 Tax=Clos... 142 1e-32 UniRef50_A6U663 Flagellar biosynthetic protein fliR n=7 Tax=Rhiz... 142 1e-32 UniRef50_A5V2S0 Flagellar biosynthetic protein fliR n=3 Tax=Sphi... 142 1e-32 UniRef50_Q3A5E4 Flagellar biosynthetic protein fliR n=3 Tax=Delt... 142 1e-32 UniRef50_C4ZAM9 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 142 2e-32 UniRef50_A5P6J2 Flagellar biosynthetic protein fliR n=1 Tax=Eryt... 141 2e-32 UniRef50_Q17YT4 Flagellar biosynthetic protein fliR n=18 Tax=Hel... 141 2e-32 UniRef50_A6F9S0 Flagellar biosynthetic protein fliR n=1 Tax=Mori... 141 2e-32 UniRef50_C7R0I3 Flagellar biosynthetic protein fliR n=2 Tax=Micr... 141 2e-32 UniRef50_C4Z5H7 Flagellar biosynthetic protein fliR n=3 Tax=Bact... 141 2e-32 UniRef50_Q4JMS6 Flagellar biosynthetic protein fliR n=1 Tax=uncu... 141 2e-32 UniRef50_A6W8L5 Flagellar biosynthetic protein fliR n=1 Tax=Kine... 141 2e-32 UniRef50_D0WZK5 Flagellar biosynthetic protein fliR n=1 Tax=Vibr... 141 2e-32 UniRef50_C6WJP4 Type III secretion system inner membrane R prote... 141 3e-32 UniRef50_B0P9X4 Flagellar biosynthetic protein fliR n=1 Tax=Anae... 141 4e-32 UniRef50_Q7NUT8 Type III secretion system EscT protein n=5 Tax=P... 140 4e-32 UniRef50_C0GJG4 Flagellar biosynthetic protein fliR n=1 Tax=Deth... 140 5e-32 UniRef50_C6XLQ1 Flagellar biosynthetic protein fliR n=1 Tax=Hirs... 139 1e-31 UniRef50_B1K3A1 Flagellar biosynthetic protein fliR n=3 Tax=Beta... 139 1e-31 UniRef50_B0RSX9 Flagellar biosynthetic protein fliR n=13 Tax=Xan... 139 1e-31 UniRef50_Q0EZ56 Flagellar biosynthetic protein fliR n=1 Tax=Mari... 138 2e-31 UniRef50_Q2W9Q3 Flagellar biosynthetic protein fliR n=3 Tax=Magn... 138 2e-31 UniRef50_C9A930 Flagellar biosynthetic protein fliR n=4 Tax=Ente... 138 2e-31 UniRef50_B4RGX9 Flagellar biosynthetic protein fliR n=3 Tax=Caul... 138 2e-31 UniRef50_C3XEY7 Flagellar biosynthetic protein fliR n=1 Tax=Heli... 137 3e-31 UniRef50_A4WT32 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 137 3e-31 UniRef50_C1TKH9 Flagellar biosynthesis pathway, component FliR n... 137 4e-31 UniRef50_A1SEN1 Flagellar biosynthetic protein fliR n=1 Tax=Noca... 137 4e-31 UniRef50_Q3V817 Flagellar biosynthetic protein n=1 Tax=Symbiobac... 137 4e-31 UniRef50_A0NPF3 Flagellar biosynthetic protein fliR n=3 Tax=Rhod... 137 5e-31 UniRef50_UPI00016C0EEE flagellar biosynthesis protein FliR n=1 T... 137 5e-31 UniRef50_C0QA54 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 137 5e-31 UniRef50_Q8D3F3 Flagellar biosynthetic protein fliR n=1 Tax=Wigg... 136 5e-31 UniRef50_Q3V7R2 Flagellar biosynthetic protein fliR n=1 Tax=Bdel... 136 9e-31 UniRef50_Q28JK8 Flagellar biosynthetic protein FliR n=1 Tax=Jann... 136 9e-31 UniRef50_B8HEJ0 Flagellar biosynthetic protein fliR n=1 Tax=Arth... 136 9e-31 UniRef50_Q89AZ0 Flagellar biosynthetic protein fliR n=1 Tax=Buch... 136 1e-30 UniRef50_C6B1H0 Type III secretion system inner membrane R prote... 136 1e-30 UniRef50_B9L8B4 Flagellar biosynthetic protein fliR n=1 Tax=Naut... 135 1e-30 UniRef50_D1B6A7 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 135 1e-30 UniRef50_C6N719 Putative flagellar biosynthesis pathway, compone... 135 1e-30 UniRef50_Q2RQH6 Flagellar biosynthetic protein fliR n=1 Tax=Rhod... 135 2e-30 UniRef50_Q45975 Flagellar biosynthetic protein fliR n=3 Tax=Caul... 135 2e-30 UniRef50_C2ED98 Flagellar biosynthetic protein fliR n=1 Tax=Lact... 134 2e-30 UniRef50_C1SNG7 Flagellar biosynthetic protein fliR n=1 Tax=Deni... 134 2e-30 UniRef50_B0K9T0 Flagellar biosynthetic protein fliR n=11 Tax=The... 134 2e-30 UniRef50_A8RW99 Putative uncharacterized protein n=1 Tax=Clostri... 134 3e-30 UniRef50_Q2LT08 Flagellar biosynthetic protein fliR n=1 Tax=Synt... 134 3e-30 UniRef50_Q0ANB4 Flagellar biosynthetic protein fliR n=2 Tax=Hyph... 134 3e-30 UniRef50_B9Z4S1 Flagellar biosynthetic protein fliR n=1 Tax=Luti... 133 5e-30 UniRef50_A9HH75 Putative flagellar biosynthetic protein fliR n=2... 133 6e-30 UniRef50_A3NFU9 Flagellar biosynthesis pathway, component FliR n... 133 7e-30 UniRef50_B0THC2 Flagellar biosynthetic protein fliR n=1 Tax=Heli... 132 9e-30 UniRef50_B0SDH1 Flagellar biosynthetic protein fliR n=6 Tax=Lept... 132 1e-29 UniRef50_C0A797 Type III secretion system inner membrane R prote... 132 1e-29 UniRef50_D2S978 Flagellar biosynthetic protein FliR n=1 Tax=Geod... 132 1e-29 UniRef50_C1F995 Flagellar biosynthetic protein fliR n=1 Tax=Acid... 132 2e-29 UniRef50_A3ZNZ1 Probable flagellar biosynthetic protein fliR n=1... 131 2e-29 UniRef50_A4A5Y4 Flagellar biosynthetic protein fliR n=3 Tax=uncl... 131 2e-29 UniRef50_Q30PK9 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 131 2e-29 UniRef50_C5CXN3 Type III secretion system inner membrane R prote... 131 2e-29 UniRef50_A6DDV7 Flagellar biosynthetic protein fliR n=1 Tax=Cami... 130 4e-29 UniRef50_C9R9Y0 Type III secretion system inner membrane R prote... 130 4e-29 UniRef50_A8TPM4 Flagellar biosynthetic protein fliR n=1 Tax=alph... 130 5e-29 UniRef50_A1UTW5 Flagellar biosynthetic protein fliR n=34 Tax=Rhi... 130 5e-29 UniRef50_A9AP22 Type III secretion protein SctT n=18 Tax=Burkhol... 130 5e-29 UniRef50_B6AV41 Flagellar biosynthetic protein FliR n=1 Tax=Rhod... 130 6e-29 UniRef50_B8DQ95 Flagellar biosynthetic protein fliR n=7 Tax=Desu... 130 6e-29 UniRef50_B8EL38 Type III secretion system inner membrane R prote... 129 7e-29 UniRef50_Q1NP89 Type III secretion system inner membrane R prote... 129 1e-28 UniRef50_A6LLB0 Flagellar biosynthetic protein fliR n=2 Tax=Ther... 129 1e-28 UniRef50_B6BI91 Flagellar biosynthetic protein fliR n=1 Tax=Camp... 128 2e-28 UniRef50_Q52497 HrpC protein n=5 Tax=Ralstonia solanacearum RepI... 128 2e-28 UniRef50_A0NT10 Flagellar biosynthesis protein n=2 Tax=Labrenzia... 127 3e-28 UniRef50_D2C589 Flagellar biosynthetic protein fliR n=6 Tax=Ther... 127 3e-28 UniRef50_Q7UXG3 Probable flagellar biosynthetic protein fliR n=1... 127 4e-28 UniRef50_Q1Q6S6 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 127 4e-28 UniRef50_C7DF44 Flagellar biosynthetic protein FliR n=1 Tax=Thal... 127 5e-28 UniRef50_A7HWA0 Flagellar biosynthetic protein fliR n=1 Tax=Parv... 126 6e-28 UniRef50_Q11LQ0 Flagellar biosynthetic protein fliR n=3 Tax=Phyl... 125 1e-27 UniRef50_C3XLD0 Flagellar biosynthetic protein fliR n=2 Tax=Heli... 125 1e-27 UniRef50_C5SN71 Flagellar biosynthetic protein fliR n=2 Tax=Caul... 125 1e-27 UniRef50_A1T0L3 Flagellar biosynthetic protein fliR n=4 Tax=Gamm... 125 1e-27 UniRef50_C4XT80 Flagellar biosynthetic protein fliR n=2 Tax=Desu... 125 1e-27 UniRef50_C1ZEF5 Flagellar biosynthesis pathway, component FliR n... 125 2e-27 UniRef50_Q8KA35 Flagellar biosynthetic protein fliR n=4 Tax=Buch... 125 2e-27 UniRef50_D1R8P1 Putative type III secretion inner membrane prote... 124 2e-27 UniRef50_C2KYZ8 Possible flagellar biosynthesis protein FliR n=1... 124 2e-27 UniRef50_A0RQU4 Flagellar biosynthetic protein fliR n=23 Tax=Cam... 124 3e-27 UniRef50_Q2SH54 Type III secretory pathway, component EscT n=1 T... 124 4e-27 UniRef50_D2TZ37 Type III secretion apparatus protein SpaR,YscT,H... 124 4e-27 UniRef50_C8PRD8 Flagellar biosynthetic protein fliR n=1 Tax=Trep... 123 5e-27 UniRef50_C4K6D9 Type III needle complex export protein n=2 Tax=C... 123 6e-27 UniRef50_B6IQA3 Flagellar biosynthesis protein FliR n=1 Tax=Rhod... 123 6e-27 UniRef50_Q3ADD0 Flagellar biosynthetic protein FliR n=1 Tax=Carb... 123 7e-27 UniRef50_A0L3J6 Flagellar biosynthetic protein fliR n=1 Tax=Magn... 123 7e-27 UniRef50_C6QF51 Type III secretion system inner membrane R prote... 122 1e-26 UniRef50_D2LCZ4 Flagellar biosynthesis protein FliR n=1 Tax=Rhod... 122 1e-26 UniRef50_A9BHY5 Flagellar biosynthetic protein fliR n=1 Tax=Petr... 122 1e-26 UniRef50_B8DMR4 Type III secretion protein SpaR/YscT/HrcT n=5 Ta... 122 1e-26 UniRef50_D1AZH9 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 122 1e-26 UniRef50_A5VVZ1 Flagellar biosynthetic protein fliR n=3 Tax=Bruc... 122 1e-26 UniRef50_O67773 Flagellar biosynthetic protein fliR n=1 Tax=Aqui... 121 2e-26 UniRef50_Q1D9K4 FliR/MopE/SpaR family protein n=2 Tax=Cystobacte... 121 2e-26 UniRef50_B6IS88 Flagellar biosynthetic protein fliR n=1 Tax=Rhod... 121 3e-26 UniRef50_Q6MES5 Putative type III secretion inner membrane prote... 120 3e-26 UniRef50_B5JK51 Bacterial export protein, family 1 n=1 Tax=Verru... 120 4e-26 UniRef50_A6CEQ7 Flagellar biosynthetic protein fliR/B n=1 Tax=Pl... 120 4e-26 UniRef50_C6XF32 Flagellar biosynthesis protein FliR n=1 Tax=Cand... 120 5e-26 UniRef50_C5EFG8 Bifunctional flagellar biosynthesis protein FliR... 119 7e-26 UniRef50_Q21AA3 Type III secretion system inner membrane R prote... 119 8e-26 UniRef50_Q1GCD0 Flagellar biosynthetic protein fliR n=8 Tax=Rhod... 119 8e-26 UniRef50_Q9KKH0 YsaT n=8 Tax=Enterobacteriaceae RepID=Q9KKH0_YEREN 119 9e-26 UniRef50_C7C777 Flagellar biosynthetic protein fliR n=8 Tax=Meth... 119 1e-25 UniRef50_Q2SEX2 Flagellar biosynthesis pathway, component FliR n... 119 1e-25 UniRef50_B1ZR30 Type III secretion system inner membrane R prote... 119 1e-25 UniRef50_A0RCA1 Flagellar biosynthetic protein n=70 Tax=Bacillus... 119 1e-25 UniRef50_C2KTP9 Flagellar biosynthesis protein FliR n=3 Tax=Mobi... 118 2e-25 UniRef50_B6QWX6 Type III secretion apparatus protein SpaR/YscT/H... 118 2e-25 UniRef50_A3W5F7 Flagellar biosynthetic protein FliR n=3 Tax=Rhod... 118 2e-25 UniRef50_UPI00019F17CD type III secretion system EscT protein n=... 117 3e-25 UniRef50_Q16DQ9 Flagellar biosynthetic protein FliR n=5 Tax=Rhod... 117 3e-25 UniRef50_P96068 Secretion system apparatus protein ssaT n=29 Tax... 117 4e-25 UniRef50_A3WGR2 Flagellar protein FliR n=1 Tax=Erythrobacter sp.... 117 4e-25 UniRef50_A2WHV1 Type III secretory pathway component EscT n=1 Ta... 117 5e-25 UniRef50_A0LT72 Type III secretion system inner membrane R prote... 117 5e-25 UniRef50_B9L5A9 Flagellar biosynthetic protein fliR n=2 Tax=Ther... 117 5e-25 UniRef50_Q01PP9 Type III secretion system inner membrane R prote... 116 7e-25 UniRef50_Q3V884 Flagellar biosynthetic protein FliR n=16 Tax=Lis... 116 8e-25 UniRef50_A8LMR5 Flagellar biosynthesis protein FliR n=1 Tax=Dino... 116 9e-25 UniRef50_C8WWG4 Type III secretion system inner membrane R prote... 116 9e-25 UniRef50_B4U883 Type III secretion system inner membrane R prote... 115 1e-24 UniRef50_B1T8E1 Type III secretion system inner membrane R prote... 114 2e-24 UniRef50_D2R542 Type III secretion system inner membrane R prote... 114 2e-24 UniRef50_A8IPM9 Type III secretion system inner membrane R prote... 114 2e-24 UniRef50_A3SFT0 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 114 3e-24 UniRef50_B9KQI0 Type III secretion system inner membrane R prote... 114 3e-24 UniRef50_C0QXX3 Flagellar biosynthetic protein fliR n=2 Tax=Brac... 114 3e-24 UniRef50_B2IG71 Flagellar biosynthesis protein FliR n=1 Tax=Beij... 114 4e-24 UniRef50_A8URB1 Flagellar biosynthetic protein fliR n=1 Tax=Hydr... 113 5e-24 UniRef50_C9NP55 Type III secretion protein SpaR n=1 Tax=Vibrio c... 112 1e-23 UniRef50_A0P0L6 YscT; putative type III secretion protein n=1 Ta... 112 1e-23 UniRef50_C4L639 Flagellar biosynthetic protein fliR n=2 Tax=Exig... 112 1e-23 UniRef50_B3RAC7 SctT: non flagellar T3S system conserved inner m... 112 2e-23 UniRef50_P0A1M6 Surface presentation of antigens protein spaR n=... 111 2e-23 UniRef50_A4EG21 Flagellar biosynthetic protein FliR n=4 Tax=Rhod... 111 2e-23 UniRef50_B5YIZ0 Putative flagellar biosynthetic protein-like pro... 111 2e-23 UniRef50_C0QP99 Flagellar biosynthetic protein FliR n=3 Tax=Hydr... 110 4e-23 UniRef50_B2VEH3 Type III secretion apparatus n=1 Tax=Erwinia tas... 110 4e-23 UniRef50_Q2T714 Type III secretion system protein BsaY n=30 Tax=... 110 6e-23 UniRef50_O85641 EscT n=26 Tax=Enterobacteriaceae RepID=O85641_ECOLX 109 8e-23 Sequences not found previously or not previously below threshold: UniRef50_Q3JKQ7 SctT n=58 Tax=Proteobacteria RepID=Q3JKQ7_BURP1 120 4e-26 UniRef50_Q2SC30 Type III secretory pathway, component EscT n=1 T... 119 7e-26 UniRef50_B7KZ93 Flagellar biosynthesis protein FliR n=7 Tax=Meth... 118 2e-25 UniRef50_Q1MQX3 Type III secretion component protein SctT n=1 Ta... 117 3e-25 UniRef50_Q0G4G4 Flagellar biosynthesis protein n=2 Tax=Aurantimo... 114 3e-24 UniRef50_Q84CR1 Putative type III secretion protein n=3 Tax=Bord... 112 1e-23 >UniRef50_P54702 Flagellar biosynthetic protein fliR n=162 Tax=Enterobacteriaceae RepID=FLIR_SALTY Length = 264 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 231/260 (88%), Positives = 246/260 (94%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVTSEQWL WL+LYFWPLLRVLALISTAPILSER++PKRVKLGL +MIT IAPSLPA Sbjct: 1 MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ND P+FS ALWLA+QQILIGIALGFTMQFAFAAVRTAGE IGLQMGLSFATFVDP SHL Sbjct: 61 NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 NMPVLARIMDMLA+LLFLTFNGHLWLISLLVDTFHTLPIG P+NSNAF+AL +AG LIF Sbjct: 121 NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LNGLMLALP+ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI LMAALMPLIAPFC Sbjct: 181 LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC 240 Query: 241 EHLFSEIFNLLADIISELPL 260 EHLFSEIFNLLADI+SE+P+ Sbjct: 241 EHLFSEIFNLLADIVSEMPI 260 >UniRef50_Q97H65 FliR/FlhB fusion protein n=1 Tax=Clostridium acetobutylicum RepID=Q97H65_CLOAB Length = 610 Score = 193 bits (491), Expect = 5e-48, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 135/253 (53%), Gaps = 2/253 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS-- 67 +++ F LRV A ++ +S+P VK+ L++ I+F + P + + V + Sbjct: 3 IAYFTSLFMVFLRVFAFFIALQVMFPKSLPNTVKVMLSLCISFFVMPYINLSQVSALNNG 62 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 F W + +IL G+ LGF F V+ G+ + Q+G S T DP+S N ++ R Sbjct: 63 FLYTWQCICEILTGLILGFFANLMFLGVKIGGQFLDFQIGYSMMTAYDPSSESNASLIER 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++M +++LF + GH +I LV +F+++ +G +N + + F+ G +A Sbjct: 123 FLNMFSVVLFFSIGGHEVVIKELVSSFNSVKLGTFVINDQSVMVAFNVFVQFFVIGFKIA 182 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP++ +LL ++ +GL++R PQL++ ++G P+ + +G++ + ++PLIA FS + Sbjct: 183 LPVVLVLLITDIVMGLMSRTVPQLNVMILGMPIKILLGLTCLMIILPLIAKVLITSFSSL 242 Query: 248 FNLLADIISELPL 260 ++ +P+ Sbjct: 243 PDIYKGFYKLVPI 255 >UniRef50_A5I580 Flagellar biosynthetic protein n=19 Tax=Bacteria RepID=A5I580_CLOBH Length = 609 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 2/253 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--SF 68 ++ R+ S PI + P K+ LA++I + + S+ + S Sbjct: 5 AYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSIDIRSINTINNST 64 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 ++ V +IL G LG+ AF R AG ++ LQ+G S T DP+++ N+ L RI Sbjct: 65 ALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERI 124 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + + ++F +GH LI LV++F+ + +G LN + F + +A+ Sbjct: 125 LYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAV 184 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ ++L +L LGL+ R PQL+I ++G P+ + VG++ +PL F + Sbjct: 185 PIVFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAFGMLP 244 Query: 249 NLLADIISELPLI 261 + + +P++ Sbjct: 245 DAIRGFYKTIPVL 257 >UniRef50_C6P5I0 Flagellar biosynthetic protein fliR n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5I0_9PROT Length = 262 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 104/259 (40%), Positives = 164/259 (63%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 M+ TS Q +WL + +PL R+LALI+++P+ + VP R+K+G A+ IT IAP+L Sbjct: 1 MISFTSAQLSAWLAAFIFPLARILALIASSPLYGIKEVPARIKVGFAIAITIIIAPTLDI 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 ++ S L++ VQQI+ G+ +GF+++ F AV AG++ G+QMGL FA+F DP + Sbjct: 61 PANLDPASAQGLFVLVQQIVAGVIIGFSIRLIFVAVEMAGDLTGMQMGLGFASFYDPVNA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 P++A+ + +LA L FL NGHL+L+ L D+F PIG +++AF + + G + Sbjct: 121 TFTPIVAQFLGILASLAFLAANGHLYLLVALADSFRDFPIGATVPSAHAFRTMAEWGGSL 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + L +LPLI LL N+ALG+L R APQL+IF +GFP+T+ VG + +P +AP Sbjct: 181 FSHALQFSLPLIGALLITNIALGILARSAPQLNIFAVGFPITIAVGFVTLWLTLPYLAPV 240 Query: 240 CEHLFSEIFNLLADIISEL 258 ++ E N ++ I+ +L Sbjct: 241 MDYFTHEGVNSISRIMLQL 259 >UniRef50_C5RFV5 Flagellar biosynthetic protein FlhB n=1 Tax=Clostridium cellulovorans 743B RepID=C5RFV5_CLOCL Length = 607 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 121/249 (48%), Gaps = 2/249 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 +++ LR+ + AP + P +K L +++ + + P + + + Sbjct: 4 ITFFVALILITLRLAGMFIAAPGILPTGTPNILKAVLILILAYMVLPVINYSGASALTEP 63 Query: 70 ALWLA--VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + G+A+GF + F A R AG II +Q+G S T DP ++ L R Sbjct: 64 TKLIIQCLNEFSTGLAVGFIINLFFIAARIAGSIIDMQVGFSMVTLFDPTANSTATYLER 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++A+++F +GH ++I + T+ + IG L+ + K + G+ +A Sbjct: 124 FFNLIAIMIFFIIDGHHYVIKAFIATYDKVSIGVFFLDQGTLQEILKLFGHFYAIGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP+I ++L ++ +G+L+R PQL+I ++G P+ L +G ++A P + F E+ Sbjct: 184 LPIILVILVADVLMGVLSRTMPQLNIMILGMPVKLLIGFGILAVSAPFFVRLITNSFQEV 243 Query: 248 FNLLADIIS 256 + L I S Sbjct: 244 PHALEKIFS 252 >UniRef50_B2TLW3 Flagellar biosynthetic protein FliR/FlhB n=6 Tax=Clostridium RepID=B2TLW3_CLOBB Length = 613 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 122/254 (48%), Gaps = 2/254 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS-- 67 ++ F+ LR+ + + P +K L+++I+ A+ + + V + Sbjct: 4 TAYFLALFFIFLRLTSYFVIVNAFFQTGTPHILKGTLSLIISIAVLAGVDYSTVNEINNV 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 ++ + + +++ G+ LGF F V+ AG + + G S + +DP SH ++ Sbjct: 64 YYLIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHSQTTLIGN 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 M+A ++F +GH +I LL+++F +PIG + +A+ + F+ G+ +A Sbjct: 124 FSYMIATVIFFIVDGHHIVIKLLIESFRIVPIGQTLVYQETMMAVISTITEYFVLGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P++ +++ +L LGL++R P + I + G P+ +G+ L+PLI + Sbjct: 184 VPIVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSSAIYNL 243 Query: 248 FNLLADIISELPLI 261 ++ I +P I Sbjct: 244 SDVFEHIFRAIPAI 257 >UniRef50_Q3SIG3 Flagellar biosynthetic protein fliR n=41 Tax=Betaproteobacteria RepID=Q3SIG3_THIDA Length = 262 Score = 176 bits (446), Expect = 9e-43, Method: Composition-based stats. Identities = 123/259 (47%), Positives = 162/259 (62%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +T Q WL + WPL R+L L+ AP+ R+VP RVK+GL + I AP+LP Sbjct: 1 MISLTDAQLNVWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPP 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V + S+ L++ VQQ LIG+A+GF M+ FAAV AGEIIGLQMGL FA+F DP S Sbjct: 61 MPAVGLGSWHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 VLAR +MLA+LL L N HL L+ +LV++F LPI EPL + F + G+ I Sbjct: 121 GQTLVLARFFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALPLI +LL NL LG+L R APQL+IF IGFP+TL VG+ ++ +P AP Sbjct: 181 FSLGLQLALPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQ 240 Query: 240 CEHLFSEIFNLLADIISEL 258 E L + + ++ L Sbjct: 241 FEQLIASGLDAATSVVRTL 259 >UniRef50_C9XJ38 Flagellar export protein n=7 Tax=Bacteria RepID=C9XJ38_CLODC Length = 604 Score = 176 bits (446), Expect = 9e-43, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 120/246 (48%), Gaps = 3/246 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA-- 74 + +R++A T IL P K A++I+ I+ ++ L+ Sbjct: 2 IFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTMQIEYATNIDNIVLFTLYG 61 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 + + + GI LG+ F ++R AG ++ QMGLS DP S ++ +M+ A Sbjct: 62 INETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLIDNLMNWTAR 121 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 ++F + +GH LI + +F +PIG +++N + FL G +A+P++ L Sbjct: 122 MIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCL 180 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254 L + LGL++R PQL++ +IG PL + VGI+L +PLI HL S+I + Sbjct: 181 LMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISHLLSQIPKMYEGT 240 Query: 255 ISELPL 260 + P+ Sbjct: 241 FALAPM 246 >UniRef50_B2AIF6 Flagellar biosynthetic protein fliR n=24 Tax=Proteobacteria RepID=B2AIF6_CUPTR Length = 265 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 113/262 (43%), Positives = 178/262 (67%), Gaps = 5/262 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M++ TS Q WL + WP R+LALI TAP+ E ++P+R K+ L+ +I ++P++ Sbjct: 1 MIEFTSAQLYGWLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSALIAMVVSPTIAQ 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V PV+SF L + + ++ IG+A GF M+ FA V+ AGEIIGLQMGLSFA+F D A+ Sbjct: 61 VPVVPVYSFGGLMIILNEVGIGLATGFVMRLVFATVQQAGEIIGLQMGLSFASFFDRAAG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPI----GGEPLNSNAFLALTKA 175 VL+R ++++A+LLFL +GHL ++ LVD+F++LPI GG PL++ +A+ +A Sbjct: 121 GQTMVLSRFLNLIAVLLFLALDGHLLMLGALVDSFNSLPIGGNPGGTPLSAGGAMAVARA 180 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 G ++F +GL+LALP+I LL LNLA+G+LNR +PQLSIF +GFP+TL+ G+ ++ +MP Sbjct: 181 GGMVFASGLLLALPMIAALLILNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQ 240 Query: 236 IAPFCEHLFSEIFNLLADIISE 257 + + +H+ + ++ + Sbjct: 241 MGSYMQHMIEAGLEAVGTVLGQ 262 >UniRef50_C6IVX3 Flagellar biosynthetic protein fliR n=2 Tax=Bacillales RepID=C6IVX3_9BACL Length = 262 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 134/256 (52%), Gaps = 4/256 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + L ++++ R+ A +PI S RSVP K+G A +I I ++ N Sbjct: 2 DTILHGISIFMLIFCRMTAFFVVSPIFSSRSVPNTFKVGFAGIIAVVILLTIGPNQSIPN 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + ++++L+G+ +G+ F+ ++ AG I +Q+G A +DP + + PVL Sbjct: 62 DLGYILVIIREVLVGLLMGYVANLIFSVIQMAGSFIDIQIGFGIANVIDPMTGASAPVLG 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL----NSNAFLALTKAGSLIFLN 182 + ++A L+FL+ NGH +L+ ++ +++ +P+ + N N L + S F+ Sbjct: 122 NLKYIIATLVFLSMNGHHYLLDAVIRSYNWVPLSNQVFQQIYNGNLSEFLVQTFSQAFML 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 ++ PL+ L ++ALG L R APQ +IFVIG P+ + VG+ ++ L+P + Sbjct: 182 AFQMSAPLVVALFVTDVALGFLARTAPQFNIFVIGIPVKIIVGLLVLLVLVPGFIVAFQA 241 Query: 243 LFSEIFNLLADIISEL 258 LF +F L D++ + Sbjct: 242 LFEVLFRALHDLLGTI 257 >UniRef50_A6SXX2 Flagellar biosynthetic protein fliR n=3 Tax=Oxalobacteraceae RepID=A6SXX2_JANMA Length = 263 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 156/255 (61%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +TS + +W+ + WPL R++ +IS AP+ SVP RVK+GL +++ IAP++PA Sbjct: 1 MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S L + QQ++IG+++GF M+ FA V AGEIIG+ MGL FA+F DP + Sbjct: 61 MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++ + +L L+++L N HL ++S L +F LPI L++ L + K G I Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G+ L+LP++ LL N+ALG+L R APQL+IF IGFP+T+ VG ++ ++P + Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNP 240 Query: 240 CEHLFSEIFNLLADI 254 +L E + + I Sbjct: 241 IINLMQEGIDAMGRI 255 >UniRef50_A6M184 Flagellar biosynthetic protein FlhB n=4 Tax=Bacteria RepID=A6M184_CLOB8 Length = 613 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 126/257 (49%), Gaps = 5/257 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--S 67 +S+ F LR+ + I P+ ++ +++++F I + + V S Sbjct: 4 ISYFLALFLIFLRITSYFMAVQIFFPTGTPQIMQGVFSLILSFGIVAGIDHSTVSAVNSS 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + ++ A+ +I+ G+ LG+ F V+ AGE + + G S + +DP + +L Sbjct: 64 YMLVFYAISEIMSGLILGYITNLIFQVVKLAGEWMDIHAGFSMVSVLDPTTQTTSTLLGN 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + ++L F +GH +I++LV++ +PIG + + + K F G+ +A Sbjct: 124 LSYFISLAFFFIVDGHHVVINMLVESTKIIPIGKTIVYQETLMEVMKTIFDYFTLGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE---HLF 244 +P++ +++ ++ LGL++R P + I ++G P+ +G+ L+PL+ + Sbjct: 184 IPIVLIIVITDVCLGLISRTVPTIPIMILGMPIKNLLGLITYIILLPLMLKLIGTAIYNL 243 Query: 245 SEIFNLLADIISELPLI 261 IF + ++IS +PL+ Sbjct: 244 PSIFREIVNLISAIPLV 260 >UniRef50_C5S861 Flagellar biosynthetic protein fliR n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S861_CHRVI Length = 260 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 146/254 (57%), Gaps = 1/254 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 L + + L W WP +R+ A++ P+ R + RV+LGLA+++ + IAP LP Sbjct: 4 LTLEATDILRWTVSLVWPFVRISAMLLVMPVFGARQINARVRLGLALLLAWMIAPQLPEV 63 Query: 62 D-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + +A++Q LIGIA+GF + F+A+ AGE I L MGL FA+ VDP + Sbjct: 64 PAIDPLSVGGVVVAIEQALIGIAMGFVVTLVFSAINQAGEAIALSMGLGFASAVDPVGGV 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +P++++ + ++A L+FL NGHL L LL+ +F T PIG + ++ + GS +F Sbjct: 124 QVPMISQYLSIIATLIFLAMNGHLVLFELLLRSFETFPIGLDGPDNEDLWYIANFGSQMF 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +++ALP + LL +NLA+G++ R APQL+IF IGFP+T+ G ++ +P + Sbjct: 184 AGAVLIALPAVASLLLVNLAMGVVTRAAPQLNIFAIGFPITILAGFLIILLTLPSLTARI 243 Query: 241 EHLFSEIFNLLADI 254 L+ I Sbjct: 244 GDFLLTALPLIERI 257 >UniRef50_Q1QW39 Flagellar biosynthetic protein fliR n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QW39_CHRSD Length = 261 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 119/259 (45%), Positives = 173/259 (66%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVT Q WL L+FWP +R+LA ++ +PI ++ VP++ + L ++ FAI P+LP Sbjct: 1 MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 D P+ S L + +Q++LIGIALG ++ A V+ AGE IGLQMGL+FATF P Sbjct: 61 MPDTPIVSIGGLGILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +M VL+RI M+ LL+FL NGHL + +L ++F TLP+GG ++ +A + + G I Sbjct: 121 NSM-VLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEI 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F +G+++ALPLI LL +NL LG+LNR +PQLSIF IGFP+TLT G+ L+ LMP + F Sbjct: 180 FTSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRF 239 Query: 240 CEHLFSEIFNLLADIISEL 258 E LFS F+ + +++ L Sbjct: 240 LEILFSNSFSTMQEVVQRL 258 >UniRef50_Q47I14 Flagellar biosynthetic protein fliR n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I14_DECAR Length = 260 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 101/255 (39%), Positives = 151/255 (59%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + S Q +W+ + +PL R+L I+ AP+ S +P+R +L LA+ I AI P+LP Sbjct: 1 MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPP 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S LW+ QQ+LIGI +GF + F A AGE I QMGL FATF DP + Sbjct: 61 MPGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNS 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 PV+ + ++ALLLFL+ NGHL ++ L +F +P+ PL ++++L L + GS I Sbjct: 121 SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+L+LP+I L+ N+AL +L R APQL++F +GFPLTL G +A + +A Sbjct: 181 FSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP 240 Query: 240 CEHLFSEIFNLLADI 254 + +F + + Sbjct: 241 LQGIFEFGMSAMLGF 255 >UniRef50_A1U244 Flagellar biosynthetic protein fliR n=8 Tax=Gammaproteobacteria RepID=A1U244_MARAV Length = 261 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 152/256 (59%), Gaps = 1/256 (0%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-N 61 + +++ W+ + WPL R+ + + PI + VP RV+LGLA+++T IAP +P Sbjct: 5 EFSADLIGQWVGQHIWPLFRLASFLMVIPIFGTQLVPARVRLGLALLMTILIAPMIPPVP 64 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V S A+ + +QQILIGI LGF + + AG++I +QMGL FA+ VDPA+ +N Sbjct: 65 QVEALSADAVVITLQQILIGIGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVN 124 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +PVLA+I + LLFL NGHL + +++F+TLPIG E L + AL S +F Sbjct: 125 VPVLAQIYTITITLLFLVMNGHLVAFEVFIESFYTLPIGLEGLGQDGVWALAHRISWMFA 184 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + ++LALP +T +L +N++ G++ R APQ++IF +GFP+ L G+ + L P + Sbjct: 185 SAMLLALPAVTAVLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFD 244 Query: 242 HLFSEIFNLLADIISE 257 E F+ + + + Sbjct: 245 QYTRETFDFMRALQGQ 260 >UniRef50_Q0AEE8 Flagellar biosynthetic protein fliR n=5 Tax=Betaproteobacteria RepID=Q0AEE8_NITEC Length = 266 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 114/255 (44%), Positives = 163/255 (63%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M +T+EQ WL + WPL R+LAL++ P+L S+P +VKLGLA+++T IAP LP Sbjct: 1 MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S + +QQI+IG+A+GF+++ F AV AGEI GLQMGL FATF DP Sbjct: 61 LPQIDPGSGVGPIVLLQQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQS 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + ++ R +LA LLFL +GHL +I++L +F LPIG + +N +F L G+ I Sbjct: 121 GQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALP++ LL NLALG+L R APQL+IF +GFPLTL +G+ +M+ +P P Sbjct: 181 FTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV 240 Query: 240 CEHLFSEIFNLLADI 254 +F E F+++ + Sbjct: 241 LTQMFQESFSIMRSL 255 >UniRef50_A4BIP6 Flagellar biosynthetic protein fliR n=1 Tax=Reinekea blandensis MED297 RepID=A4BIP6_9GAMM Length = 263 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 89/256 (34%), Positives = 146/256 (57%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++T SW++ + WP R+ A P+L R +P RV+LGLA +IT+ I P LP Sbjct: 7 IELTDAMIASWVSHFMWPFFRLGAFFVIVPVLGARLIPVRVRLGLAFVITYTIYPLLPDM 66 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + ++QILIG LGF + AG+ I +QMGL FA+ VDPA+ + Sbjct: 67 PIIEAVDVQTFMIILEQILIGTTLGFLVFVILQIFILAGQTISMQMGLGFASMVDPANGV 126 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ VL++ +L L++L NGHL + ++VD+F+TLP+G ++ L++ G+ +F Sbjct: 127 SVAVLSQWYQVLVTLVYLAINGHLLTLEVVVDSFYTLPVGQGLFTVESWRLLSEFGAWLF 186 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LMLALP +T LL +NL G++ R APQL++F +GFP+T+ G+ ++ AP Sbjct: 187 RASLMLALPAVTALLLVNLTFGVMTRAAPQLNVFALGFPITMLGGLVIVWVSYAAAAPLV 246 Query: 241 EHLFSEIFNLLADIIS 256 + + + +I Sbjct: 247 RQYLNVHIDFMRALIG 262 >UniRef50_A1WCC7 Flagellar biosynthetic protein fliR n=8 Tax=Burkholderiales RepID=A1WCC7_ACISJ Length = 256 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 105/253 (41%), Positives = 163/253 (64%), Gaps = 1/253 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ T Q ++WL+ WP LRVLAL ++AP+ S R +P R ++GLA ++ LP Sbjct: 1 MITFTEAQIMAWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLPE 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V + S A VQQ+ IG+A+GF ++ FAAV AGEIIGLQMGL+FA+F DPAS+ Sbjct: 61 QPVISLNSREAAGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPASN 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +AR +++LLF+ NGHL ++ +V +F + P+GG L + + L + G+ + Sbjct: 121 AQVSAVARFFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGASL 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + L +ALP+I LLL +NL LG+++R+APQ++I+ +GFP+TLTVG+ + A +P++ Sbjct: 181 FSSALWIALPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPMLEQP 240 Query: 240 CEHLFSEIFNLLA 252 L + +L A Sbjct: 241 MLALLQQSIDLFA 253 >UniRef50_Q1GZV4 Flagellar biosynthetic protein fliR n=3 Tax=Methylophilaceae RepID=Q1GZV4_METFK Length = 266 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 153/255 (60%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ V E W+ WPL R+LA I+ AP+ + R++P VKLGL +++T A+ PS+P Sbjct: 1 MVTVPEEFLQVWVATLMWPLTRILAFIAVAPLFNHRALPNNVKLGLGLVLTVAVMPSIPD 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V VFS L + QQ++IG A+GF+++ F+AV AG G+ MGL FA F DP + Sbjct: 61 IPPVSVFSMNGLLILCQQVIIGAAMGFSLRIIFSAVELAGHTAGMTMGLGFAMFYDPQTQ 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + + + +L++LLFL+ +GHL +IS L ++F + P+ EP + G I Sbjct: 121 GQSTSIGQFLVVLSMLLFLSIDGHLVVISTLAESFSSFPVTAEPNFGLDPYKIALWGGKI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+++LP+I LL NLALG+L R APQL++F IGFP+T+++G L+ +P + Sbjct: 181 FSAGLLMSLPIIAALLLANLALGVLTRAAPQLNLFGIGFPITISLGFLLLMLALPYMMQP 240 Query: 240 CEHLFSEIFNLLADI 254 + L E + + + Sbjct: 241 VQRLMHESMSFMQTL 255 >UniRef50_B2A364 Flagellar biosynthetic protein fliR n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A364_NATTJ Length = 257 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 134/254 (52%), Gaps = 1/254 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVP 64 + L L+ L R+ +I TAPI +P ++K+ ++++T P L P Sbjct: 4 TTLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSD 63 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + A ++++GIA+G F++++ AG++I +QMG + A +DP +P+ Sbjct: 64 YHIMNVILFAFMELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPL 123 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + + +LA+++FL NGH LI + +++ LPIG +AL + S +F+ + Sbjct: 124 IGQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFVLAI 183 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ P + L N+ALG+L R PQ+++F+IGFP+ + VG + LMP +LF Sbjct: 184 QVSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLGNLF 243 Query: 245 SEIFNLLADIISEL 258 I++ L + + L Sbjct: 244 QHIWDGLYNFLQAL 257 >UniRef50_B8CYQ1 Flagellar biosynthetic protein fliR n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ1_HALOH Length = 259 Score = 166 bits (421), Expect = 6e-40, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 133/255 (52%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV-- 63 + ++ + + R L L AP+ R P RVK+ LA+M+TF P + V Sbjct: 4 EDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVEL 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + L +++ LIG +G+ FA+++ AG+ I ++MG + A +DP S + P Sbjct: 64 PQQTVGILLDVIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAP 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 V+ + +++A+L+FL NGH L+ L +F +P+ G L S F L + +F+ Sbjct: 124 VVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMFIIA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 +ALP++ L ++ G L R PQ++IF+IG P+ + +G ++ + + F + L Sbjct: 184 FKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQDL 243 Query: 244 FSEIFNLLADIISEL 258 FSE + L II + Sbjct: 244 FSEFYRELIKIIKLM 258 >UniRef50_A3DCP2 Flagellar biosynthetic protein fliR n=3 Tax=Clostridium thermocellum RepID=A3DCP2_CLOTH Length = 261 Score = 166 bits (421), Expect = 7e-40, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS-FFAL 71 + ++ +R+ L API R++P K+G + M + ++ ++ + + Sbjct: 12 IEVFMLIFVRMTGLFVIAPIFGSRNIPTYCKIGFSFMTALILVNTIKVQELYFSNIYEYF 71 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L +++ L+GI LG+ F A+ AG+ I +Q+G +DP + + + + + Sbjct: 72 ILVLKEFLVGITLGYVAYMIFTAIYVAGQFIDMQIGFGVVNVIDPLNSTQVSITSNFYFL 131 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L +L+FL GH LI L +++ +P+G + + + IFL ++ P+ Sbjct: 132 LCMLVFLICRGHYILIRALFASYNYIPVGTGVFGEDMVNDIVRVFGNIFLIAFKISAPIT 191 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 ++ +ALG++++ PQL++F++G PL + +G+++M +P+ E+L + I N + Sbjct: 192 ISIMISEVALGIVSKTVPQLNVFMVGMPLKIILGLAVMVITIPMFLNLVENLITGIDNEM 251 Query: 252 ADIISEL 258 + ++ Sbjct: 252 HIFLKDM 258 >UniRef50_Q4ZQU8 Flagellar biosynthetic protein fliR n=20 Tax=Pseudomonas RepID=Q4ZQU8_PSEU2 Length = 261 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 2/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +T Q +W+ + PL R++AL+ T PI+ VP+RV++ LA+ IT +AP+LPA Sbjct: 4 MLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPA 63 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V AL L +QI+IG +G ++Q F AG+II QMG+ FA+ VDP + Sbjct: 64 MPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNG 123 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++ + + ML LLFL NGHL ++ +LV++F T+P+G L +N F L + Sbjct: 124 VSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWV 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +GL L LP IT LL +N+A G++ R APQL+IF IGFPLTL +G+ ++ M + Sbjct: 183 LASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQ 242 Query: 240 CEHLFSEIFNLLADIISE 257 + + ++ L D++ Sbjct: 243 YQPIATQALQALRDMVRA 260 >UniRef50_D0KYN9 Flagellar biosynthetic protein fliR n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN9_HALNC Length = 258 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 151/257 (58%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + ++ + + W+ Y W L+RV AL+ PI R VPKR ++ A++ + IAP+LP Sbjct: 1 MILSLAEVMGWVGSYVWVLVRVAALLMVVPIFGARGVPKRWRILAALVFSLIIAPTLPPV 60 Query: 62 D-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + L QQI+IG+ +GF + ++ AGE + L MGL FA VDP + + Sbjct: 61 PTIDPLSVAGILLVAQQIIIGVTMGFVLGLIVSSFVVAGESMALGMGLGFAQTVDPQNGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++P++++ + ++A LLF++ +G ++ +L D+F LPI L+ F + G +F Sbjct: 121 SVPIVSQFLTVVATLLFISLDGPALIVKMLADSFVWLPIAPVGLSPETFWRVVGFGQSMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +N +++ALP+I LL +NLA+G++ R APQL+IF IGFP TL +G L+ P P Sbjct: 181 INAILIALPVIISLLMVNLAMGVITRAAPQLNIFSIGFPATLLIGFFLILVSSPTWVPIL 240 Query: 241 EHLFSEIFNLLADIISE 257 EH + ++D++ + Sbjct: 241 EHFLQQTLQFISDLLRQ 257 >UniRef50_A1WUA7 Flagellar biosynthetic protein fliR n=3 Tax=Ectothiorhodospiraceae RepID=A1WUA7_HALHL Length = 263 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 156/257 (60%), Gaps = 2/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-A 60 ++++S + +W+ + +PL+R+ A AP+ VP +V++ + + +T A+ P++ Sbjct: 1 MEISSAEAAAWVGTFMYPLMRIGAAALVAPVFGNDMVPLQVRVFIGVALTIAVLPAVGEV 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L +AVQ+IL+G+ +G + A AGE I L MGL FAT VDP + + Sbjct: 61 PPVDPLSPDGLLIAVQEILVGLTIGMVLALALNTAVIAGESIALAMGLGFATMVDPQTGM 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++PV+++++ + LLFL GHL LI LL D+F +PIG L+ + F + G+ ++ Sbjct: 121 SVPVISQLLLTIVTLLFLAVGGHLMLIQLLADSFSAVPIGEIVLDRDVFWGVAAWGTQMY 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM-AALMPLIAPF 239 +++ALPL+T+LL +NL+LG++ R APQ+++F +G PLT+ VG LM ++P + Sbjct: 181 AGAVLIALPLVTVLLVINLSLGVMTRAAPQMNVFSVGLPLTILVGGVLMPILVLPALPAR 240 Query: 240 CEHLFSEIFNLLADIIS 256 ++SE +N + ++ Sbjct: 241 MAMMWSEAYNTIGQLLG 257 >UniRef50_Q485K9 Flagellar biosynthetic protein fliR n=8 Tax=Alteromonadales RepID=Q485K9_COLP3 Length = 260 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ T ++ + P R+ ALI T S +++P RVK+ L + IT A+ P++P Sbjct: 1 MEFTETIINQYMADFVLPFSRISALIMTMIGFSSKTIPGRVKVFLCISITIAVMPAIPPA 60 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S L QQ++IG+ LGF AG+II +Q GL FA+ VDPAS + Sbjct: 61 SVTNLMSLNTAILLGQQMIIGVMLGFVTIMVVNTFTLAGQIIAMQSGLGFASLVDPASGM 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 N+P + + +L+ LLF +GHL + +V +F TLPI E L+S + + + G +F Sbjct: 121 NVPAIGQFFLILSSLLFWVMDGHLAYLQFIVASFDTLPIPTEHLSSIKYREVVEWGGWMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L LAL IT +L +N + G++ R APQL+IF IGFP+T+ G+ +M Sbjct: 181 ATALSLALAPITAMLLINFSFGIMTRAAPQLNIFAIGFPITMMAGLLIMWLTFGNFFTHF 240 Query: 241 EHLFSEIFNLLADIIS 256 E + + +I Sbjct: 241 ELQWQRALDFSCYLID 256 >UniRef50_B8I3N6 Flagellar biosynthetic protein fliR n=2 Tax=Clostridium RepID=B8I3N6_CLOCE Length = 265 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 129/259 (49%), Gaps = 2/259 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +Q+ L+ + L+ +R+ L TAPI R++P K+G A + + + + Sbjct: 1 MQIPFGMLLNNVELFLLIFVRMTGLFVTAPIFGRRNIPVYYKVGFAFITAILASSVIRVD 60 Query: 62 DVPVFSFFALW--LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + F ++ +++ L+GI +GF F + AG+II +Q+G DP S+ Sbjct: 61 HIINTDNFLIFALYILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPISN 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +PV A + +L++++FL NGH LI L ++F +P+G + + + Sbjct: 121 IQIPVTANLYFILSMIIFLLTNGHHMLIRALYESFQIIPLGSAVIGPKLKDDVIGIMQGV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G +A P++ + ++ LG++++ PQ+++F++G PL + VGI ++ +P Sbjct: 181 FSMGFKIAAPIVAAIFITDVVLGIISKTIPQMNVFILGMPLKIFVGILIILITIPAFVYI 240 Query: 240 CEHLFSEIFNLLADIISEL 258 + ++ + + ++ Sbjct: 241 VTVITDDMNTQIFKFLKDM 259 >UniRef50_Q21IP9 Flagellar biosynthetic protein fliR n=2 Tax=Alteromonadales RepID=Q21IP9_SACD2 Length = 261 Score = 162 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 144/255 (56%), Gaps = 1/255 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND- 62 T + L YF P R+ A+ PIL + V RV+LGLA ++T + P L + Sbjct: 6 FTEQDLGLLLQQYFLPFCRIGAMFLAMPILGSQLVSPRVRLGLAFIVTLMVVPMLGSIPK 65 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 V S Q+IL+G+A G+ Q AF AG++I ++MGL FA+ DP + + Sbjct: 66 VSGLSVQTFIYISQEILLGLAAGYCFQVAFQVFVLAGQLIAMKMGLGFASMNDPVNGVQT 125 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 +++ ML L+F++ NGHL +I++LV++F T P GG ++N + G+ +F Sbjct: 126 TAISQFYLMLVTLMFVSVNGHLVMINMLVESFVTFPPGGFIFSTNTMWKIANVGTWLFAA 185 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 GL++ALP++T LL +N+A G+++R APQL+IF IGFP TL G+ ++ + E Sbjct: 186 GLLMALPVLTALLFINIAFGIMSRAAPQLNIFAIGFPFTLLCGLLMIWLGLVTFDSNFES 245 Query: 243 LFSEIFNLLADIISE 257 + + F LL ++ + Sbjct: 246 VMDDGFILLHQVLHQ 260 >UniRef50_B2UJU2 Flagellar biosynthetic protein fliR n=6 Tax=Ralstonia RepID=B2UJU2_RALPJ Length = 262 Score = 162 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 151/258 (58%), Gaps = 1/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 M+Q T+ Q W+ +Y+WPL+RVLA I+ AP + VP +K+ L ++IT A+AP LP Sbjct: 1 MIQFTAAQLNGWIAMYWWPLVRVLAFIAMAPPFANTEVPTSIKIALGVIITVALAPMLPV 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V V S+ LW+ + Q +IG++LGF +Q F+A+ AGE++ +QMGL FA+ +DP Sbjct: 61 PVGVSVGSYEGLWITLLQAVIGLSLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPQQT 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +L R + + A+ F+ +GHL L+ L D+F LP+ PL + + L G+++ Sbjct: 121 ESSMLLGRFISLTAITAFIAGDGHLVLLHALFDSFTALPVSAAPLANPGWQTLAGGGTMV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + +ALP+I ++L +NL +L+R A L+ F +G TL VG+ L+ +M +AP Sbjct: 181 FALAVRIALPIIAIMLVVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPV 240 Query: 240 CEHLFSEIFNLLADIISE 257 E + L + Sbjct: 241 VERSVMDALELGGRAFGQ 258 >UniRef50_Q3V7I9 Flagellar biosynthetic protein fliR n=7 Tax=Vibrionaceae RepID=Q3V7I9_PHOPR Length = 259 Score = 162 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 140/260 (53%), Gaps = 2/260 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +++ Q +WL +WP R+ A + P+ ++P +V++GLA I+ AP +P Sbjct: 1 MLDISAAQLTAWLGQIWWPFFRLGAAMLMMPVFGGSTIPTQVRVGLAFCISLLAAPLMPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S AL L VQQ++IG +G ++ F T G+I+ +QMGL A DP + Sbjct: 61 MPSVDPLSLDALILGVQQMIIGGIMGLMLELLFGVFTTMGQILSMQMGLGMAMSNDPING 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++P L + + LLLFL +GHL + ++V +F+ P+G P + + + G LI Sbjct: 121 VSIPTLGKYYQLYILLLFLALDGHLVALDVVVQSFNVWPVGEMPSQDALYSVVMRLGWLI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L+ + +L +N A G++NR APQL++F +GFP+T+ +G+ + I Sbjct: 181 AAAFLLALP-AVCAMLLVNGAFGMMNRAAPQLNVFALGFPMTMLLGLMCLLITTSSIPEN 239 Query: 240 CEHLFSEIFNLLADIISELP 259 L SE ++A++ + P Sbjct: 240 FTRLCSETLAMMANLEAVQP 259 >UniRef50_B9NJ47 Predicted protein n=6 Tax=cellular organisms RepID=B9NJ47_POPTR Length = 314 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 91/250 (36%), Positives = 156/250 (62%), Gaps = 1/250 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + Q ++WL+ WP LRVLA+ S AP+ S+R +P R+K+GLA ++ P L Sbjct: 60 ITFSEAQLVAWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVLGDQ 119 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S AL +QQ+ +G+A+GF ++ FAAV AGE++GLQMGL+FA+F DP ++ Sbjct: 120 PVIGINSPQALGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNA 179 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + +AR M ++ LLF+ NGHL ++ ++ ++ P+ G L + + L + G+ +F Sbjct: 180 QLSAVARFMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVF 239 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +ALP++ +LL +NL LG+++R+APQ++I+ + FP+TLTV ++ + A +PL+ Sbjct: 240 ASAFWIALPMVAMLLFVNLVLGIISRVAPQMNIYAVXFPVTLTVXLTGLMATLPLLEQPL 299 Query: 241 EHLFSEIFNL 250 L + Sbjct: 300 VALLQRGIAV 309 >UniRef50_P35537 Flagellar biosynthetic protein fliR n=20 Tax=Bacillaceae RepID=FLIR_BACSU Length = 259 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 118/255 (46%), Gaps = 3/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + + +R+ A T P+ R+VP ++G A + ++ Sbjct: 2 NSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEI 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + LA ++ L+G+ LG AAV+ AG I QMG S A +DP + P++ Sbjct: 62 DEHYMLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIG 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSN---AFLALTKAGSLIFLNG 183 + + +ALL L+ N H L+ + +F + + N + K+ + +F+ Sbjct: 122 QFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIA 181 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 ++ P++ L ++LALG++ R PQL++FV+G PL + V ++ M +I ++ Sbjct: 182 FQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNV 241 Query: 244 FSEIFNLLADIISEL 258 FS + ++++ + Sbjct: 242 FSLTIETMRNLLALV 256 >UniRef50_Q2RKD3 Flagellar biosynthetic protein fliR n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKD3_MOOTA Length = 255 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 142/252 (56%), Gaps = 1/252 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFS 67 +L+ ++F L+R A TAP R VP VK GL ++ + P LP V S Sbjct: 3 YLTQAEIFFLVLVRTTAFFVTAPFFGIRGVPTMVKAGLGFLVALLLLPVLPADQPVFNSS 62 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + L G+ALG+ F+A++ AG+++ + MGL+ AT DP + + ++ + Sbjct: 63 WVYALAVLNESLAGLALGYLASLIFSAIQMAGQLLDIHMGLAMATLFDPQNAASTTIMGQ 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +L LLLF +GH L+ L ++F LP+GG + N A+ K + F L +A Sbjct: 123 FFAILGLLLFFQLDGHHTLLLALQESFRLLPLGGVHFDGNLLWAVVKLFAGTFALALQIA 182 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PLI +LL +LAL L+ R PQL++F++GFPL + +G+ +M AL+PL+A ++FS++ Sbjct: 183 APLIAVLLIADLALSLVARTVPQLNVFILGFPLKVGLGLLVMIALLPLLATVFSNIFSQM 242 Query: 248 FNLLADIISELP 259 + LA +I P Sbjct: 243 EHDLALLIRGWP 254 >UniRef50_A5D0I0 Flagellar biosynthetic protein fliR n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0I0_PELTS Length = 254 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 1/250 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFSF 68 LS+L +F LR A ++ P+ + R VP +K + + I P L N +P+ ++ Sbjct: 4 LSYLAAFFLVFLRTAAFMTAGPLYALRGVPPLLKAAFCLALAAVIFPVLDLNEPLPLDAW 63 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 A ++ +G+ LG + + R AG+II Q+G S A DP +L++ Sbjct: 64 GYGLAAARETGLGLLLGTAVTMILNSFRMAGQIIDFQIGYSMAALADPQYGTQNTLLSQY 123 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +LAL+ FL +GH LI+ LV+++ +P+ N A L + S F L ++ Sbjct: 124 LYLLALVFFLVVDGHYSLIAGLVESYRLVPLNAAVFNGAAASVLLRMFSGSFAIALQVSA 183 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ +L+ +L LG L R APQL++F+ GFP+ + G+ ++ L+PL+ L I Sbjct: 184 PVLAVLVICDLTLGFLARTAPQLNVFLTGFPVKIAAGLLTLSFLIPLLGTVLRSLLGLIE 243 Query: 249 NLLADIISEL 258 L ++ L Sbjct: 244 RDLYTLMRVL 253 >UniRef50_Q7NTD4 Flagellar biosynthetic protein fliR n=1 Tax=Chromobacterium violaceum RepID=Q7NTD4_CHRVO Length = 252 Score = 159 bits (403), Expect = 8e-38, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 148/257 (57%), Gaps = 6/257 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML ++ Q +W++++ WP R++ L P+ + R VP+R K A+++T + A Sbjct: 1 MLAISDIQINAWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTV-----ILA 55 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +P + + VQQ+LIG+++GF M+ +AV G IIG Q GL FA F DP Sbjct: 56 PLLPPLPAEGIAILVQQLLIGLSMGFVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAA 115 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PVL++++ + LFL F+GH ++ L +F LPIG P+ + ALT G+ +F Sbjct: 116 QVPVLSQMLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIG-MPMPAQGIKALTLWGAHLF 174 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 G+ LA+P+I LL NLA+G++ R APQ +IF GFPLT+ +G + +P++ P Sbjct: 175 EWGVWLAMPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVI 234 Query: 241 EHLFSEIFNLLADIISE 257 E ++ F+++ ++ Sbjct: 235 ERMYQAGFDMMLRMLQA 251 >UniRef50_B9Z788 Flagellar biosynthetic protein fliR n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z788_9NEIS Length = 258 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 2/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M ++ Q + ++L+ WP R++ ++ P+ S RS P R K G A+++T + P LP Sbjct: 1 MFPISDLQINALVSLFVWPFARIMGVLLADPLFSSRSAPARFKAGFALLLTLLLVPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 +PV S + + VQQ+LIG+ALG M+ AV AG ++G QMGL FA+F DP + Sbjct: 61 QPAIPVVSAEGVAVLVQQLLIGLALGLVMRVVITAVEMAGFVMGTQMGLGFASFYDPINA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P +ARI+ + LLFL GH +I +L+++F TLPIG L + AL + G I Sbjct: 121 AQVPTIARILTLFTFLLFLLMGGHQVVIEILLESFRTLPIG-MTLPPDRLKALAEWGGHI 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALP++ LL NLA+G++ R +PQ +IF GFPLTL VG + + +PL+ P Sbjct: 180 FNWGLWLALPVVAALLVTNLAIGVMTRASPQFNIFTFGFPLTLLVGFAALYLSVPLMVPA 239 Query: 240 CEHLFSEIFNLLADIISE 257 E ++ E F + ++ Sbjct: 240 IESIYREAFAFMQGMLKS 257 >UniRef50_A1HN22 Flagellar biosynthetic protein fliR n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN22_9FIRM Length = 260 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND---VPVFS 67 S L + RV +++TAPIL R++P K G A+++++ + P + VP Sbjct: 9 SQLGFFLLIFTRVTGILTTAPILGSRNIPVYTKAGFALILSYILTPIVVQRSHIIVPDQF 68 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 ++L + ++LIG+ LG+ F AV+ AG+++ +Q+G +DP S +P++ Sbjct: 69 GAYVFLVIGELLIGLILGYISSMIFYAVQMAGQLLDMQIGFGIVNIIDPQSGQQLPLIGN 128 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + +LL+F NGH L+S L +F T+P+G + + + L ++ Sbjct: 129 FKYIFSLLVFFATNGHHILLSALFTSFKTVPVGAAVFRPQLADLVIDITFSVLIIALKIS 188 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP++ + ++A+G+L R+ PQ++IF++G P + VGI ++A +P E FS + Sbjct: 189 LPILVAIFLTDIAMGILARIMPQMNIFIVGIPGKIIVGIFMLALTLPFYITLLEVGFSAM 248 Query: 248 FNLLADII 255 + + ++ Sbjct: 249 YKDIYRLL 256 >UniRef50_Q12PK2 Flagellar biosynthetic protein fliR n=8 Tax=Gammaproteobacteria RepID=Q12PK2_SHEDO Length = 267 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 145/256 (56%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 +++ ++ + Y WPL R+ +++ + + P RV+L LA+ TFAIAP LP Sbjct: 1 MEILFDEISQTIAAYLWPLFRISSMLMIMAVFGANTTPSRVRLMLAVAFTFAIAPVLPEI 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +V +F+F A+++ +QQILIG +GF G+IIG+Q L FA+ VDP S Sbjct: 61 KNVELFAFSAVFITLQQILIGAVMGFVTLMLMQTFVLTGQIIGMQTSLGFASMVDPGSGE 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 PV+ +LA L+FL+ +GHL + ++V +F ++P+ + + + L + G +F Sbjct: 121 QTPVVGNFFLLLATLIFLSIDGHLLMFRMIVASFESIPVSNQGIEIANYKILAEWGGYMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L +++ I LL +NL+ G++ R APQL+IF IGFP+T+ G+ ++ + I Sbjct: 181 GAALTMSMSAIVALLLINLSFGVMTRAAPQLNIFSIGFPVTMVSGLLILWLTLGPIMAHF 240 Query: 241 EHLFSEIFNLLADIIS 256 + ++ L+ D++S Sbjct: 241 DEVWYAAQVLMCDLLS 256 >UniRef50_A1K939 Flagellar biosynthetic protein fliR n=2 Tax=Rhodocyclaceae RepID=A1K939_AZOSB Length = 270 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 156/257 (60%), Gaps = 1/257 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKL-GLAMMITFAIAPSLP 59 M+ VTS Q +WL +PL R+L L +TAP+ S R++P R++L + + Sbjct: 1 MISVTSAQLDAWLAALMFPLARLLGLFATAPVFSNRAIPVRIRLTMALGIALALLPALPA 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 P L + VQQ+ IGIA+GF ++ FAA+ AG +IG+QMGLSFA F DP + Sbjct: 61 MPQTPPGGGIGLLVMVQQMFIGIAIGFMIRIVFAAIDMAGSLIGMQMGLSFAVFFDPDAG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 VL+ + ++A LLFL+ NGHL L++ L+ +F LPIG ++++ + + +AG+ + Sbjct: 121 GQTAVLSDFLSLVATLLFLSINGHLMLVAALIRSFEWLPIGLNVVSASGWAYIARAGAAV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+L+LP++ +LL N+ALG+L R APQL++F IGFP+TL +G + +M P Sbjct: 181 FATGLLLSLPIVAVLLVANIALGILTRAAPQLNLFAIGFPVTLAMGFMGLILIMTNFGPV 240 Query: 240 CEHLFSEIFNLLADIIS 256 LF F+ ++ ++ Sbjct: 241 VVSLFEHGFDTISAMLE 257 >UniRef50_C1DAZ1 Flagellar biosynthetic protein fliR n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DAZ1_LARHH Length = 264 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 93/256 (36%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +T + L+ Y WPL RV+ + P+ ++VP+RVK+ LA+ +T + P LP Sbjct: 1 MLALTDAEIRLLLSTYLWPLFRVMGFLLADPLFGTKAVPRRVKVVLAIALTLLLVPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 VPV S +++ VQQ+LIG+A+GF M+ AV AG +IG+QMGL FA DP Sbjct: 61 MPAVPVVSGEGVFIIVQQLLIGVAMGFAMRLVITAVELAGAMIGMQMGLGFAMQFDPMMG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P L+R++ + L+ L+FNGHL ++ + ++F PI +PL + + G + Sbjct: 121 AQVPSLSRLLTLSTYLVLLSFNGHLIMLGTVAESFTLFPISLDPLPAAGLQLVAAWGGKM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L L+LP++ LL NLA+G++ R APQ +IF GFPLTL +G ++ +P + Sbjct: 181 LALALWLSLPVVVALLITNLAIGVMTRAAPQFNIFSFGFPLTLLIGFVVLYYALPFMGQA 240 Query: 240 CEHLFSEIFNLLADII 255 + L+ + F L+ + Sbjct: 241 LQQLYLQGFELMRQTL 256 >UniRef50_A6W0V6 Flagellar biosynthetic protein fliR n=2 Tax=Marinomonas RepID=A6W0V6_MARMS Length = 260 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 124/253 (49%), Gaps = 1/253 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML++ +Q LS + P R+ A P+ R V RV++ + ++ I P + Sbjct: 1 MLELHPDQLLSLTISFLLPFFRIGAFFMALPLFGSRLVSPRVRIAFSFLVAIIITPVIDV 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + L +Q++IG LGF + F AG++ ++ GL FA DPA+ + Sbjct: 61 PNYDPISPAYIVLIAEQLVIGFVLGFVVTILFQLFSLAGQLAAMKAGLGFAMSNDPANGI 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ L + + L FL NGHL +I L ++F+ PIG +S + L G +F Sbjct: 121 SVATLGQYYLSMVALAFLGTNGHLVMIEYLAESFNYWPIGSG-FDSQRYWQLVLLGGWMF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L++ LPL +L +NL+ G++ + +PQL++F +GFP+ + + ++ Sbjct: 180 EKALLIVLPLAVAVLVINLSFGVVAKASPQLNVFALGFPIIMLFSLFFFWIMLDDFLNIY 239 Query: 241 EHLFSEIFNLLAD 253 F E+ + + + Sbjct: 240 LLFFGEMIDWMKN 252 >UniRef50_C6NWP1 Flagellar biosynthetic protein fliR n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NWP1_9GAMM Length = 262 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 101/257 (39%), Positives = 162/257 (63%), Gaps = 2/257 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +TS Q W+ +FWP +R+LAL+STAP+ S +VP +V++GLA +I+ AIAP+LP Sbjct: 1 MISLTSGQLEHWIGAFFWPFVRILALLSTAPVFSASAVPIQVRVGLAAIISVAIAPALPT 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S L L V+QI+IG ALGF + F+AV+ AG +I LQMGL F++F DP + Sbjct: 61 LPAVHFLSGAGLVLLVEQIVIGTALGFAVTLIFSAVQFAGSVISLQMGLGFSSFFDPTTG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSL 178 + +P L+ +++ LL F+ NG L ++ +L+ +F LP+ +++ A+ L AG+ Sbjct: 121 VQVPTLSNFLNLAVLLFFMALNGQLLVLVVLMRSFTVLPVDPNLVVHATAWHVLAAAGAA 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F G+ +A P++ L +N+ALG+L+++APQL++FV+GFPL + VG+ + L P + Sbjct: 181 VFSLGMAIAAPVLGALFLVNIALGVLSKLAPQLNLFVVGFPLLIGVGLIGLYLLAPALEL 240 Query: 239 FCEHLFSEIFNLLADII 255 L NL + Sbjct: 241 VVRQLLDLALNLSGRFM 257 >UniRef50_B8GQZ8 Flagellar biosynthetic protein fliR n=2 Tax=Thioalkalivibrio RepID=B8GQZ8_THISH Length = 257 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 95/257 (36%), Positives = 153/257 (59%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-A 60 + T+ + +W+ WP LR+ A++ AP+ +V RV+L +A ++ +AP +P Sbjct: 1 MNFTTAEITAWIGSLLWPFLRISAMLLAAPLYGAGTVTVRVRLAIAFILALVVAPLIPLP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L ++VQQILIG+ +GF +Q FAA+ AGE I L MGL FA+ VDP S + Sbjct: 61 PAVEPLSLAGLVVSVQQILIGLTIGFVLQMVFAALTQAGEAIALSMGLGFASMVDPQSGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PV++ +++ LLFL NGH+ LI L + +F LP+G E + AL GS +F Sbjct: 121 QVPVVSSYFVIMSTLLFLALNGHVALIELTLLSFQALPVGVEGVTREGLWALVSWGSTMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L L++ALP + +L +NL++G++ R APQL+IF +GFP+ + +G L+ P++ P Sbjct: 181 LYALLVALPAVASMLLVNLSMGVITRAAPQLNIFAVGFPMMIMLGFILLLLTTPVLLPKF 240 Query: 241 EHLFSEIFNLLADIISE 257 L + F+L+ + + Sbjct: 241 TELLASGFDLMGILTRQ 257 >UniRef50_A6GTX6 Flagellar biosynthetic protein fliR n=1 Tax=Limnobacter sp. MED105 RepID=A6GTX6_9BURK Length = 254 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 157/250 (62%), Gaps = 2/250 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + EQ W+ + WP +R+LA+++TAP+ R+V +R ++GLA +I + P LPA Sbjct: 1 MVPINGEQLEIWIASFLWPFIRILAILATAPVFDNRTVQRRTRVGLAALIAILMMPLLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S A+ + +QQILIG+A+GF+M+ FAA AG+++GLQMGL+FA F+DPA Sbjct: 61 PPV-LSSAQAIPVLIQQILIGVAMGFSMRLVFAAFEMAGDLLGLQMGLAFAQFIDPARGT 119 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++ + +LA+L FL +GHL +I+ +V +F +PI N+ ++ AGS++F Sbjct: 120 QTPLIGSFLGVLAMLTFLVIDGHLLVIAAVVQSFELIPISANLAVVNS-QSIAMAGSIMF 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L ++LP++ +L N+ LG+L R APQL++ IGF +T+ VG+ ++ +P Sbjct: 179 MLALQISLPVMAAVLISNIVLGILARAAPQLNVMSIGFSITIGVGLWILWVSLPYFIAGI 238 Query: 241 EHLFSEIFNL 250 + + ++ Sbjct: 239 DGAIGRLLSI 248 >UniRef50_Q31HN5 Flagellar biosynthetic protein fliR n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HN5_THICR Length = 247 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 97/243 (39%), Positives = 148/243 (60%), Gaps = 1/243 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSFFAL 71 + LYFWP +R+ ++ PILS VP V+L LA+ ITFA+APSL V F++ + Sbjct: 1 MGLYFWPFIRISGMLLMVPILSGSYVPMNVRLLLAVFITFAVAPSLALPPPVDPFTWHGI 60 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L VQQ+ IG+A+G F A AG + + MGL+ A+ VDPA+ +N P++ R + Sbjct: 61 LLIVQQLGIGVAIGLIFALIFQAFVIAGHLASMSMGLAMASMVDPATGVNTPIIGRYFTI 120 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 +A LLFL NGH+ + ++ +F TLPIG ++ + GS +F +G+ +ALPL+ Sbjct: 121 IATLLFLLMNGHVLVFKAVLQSFETLPIGLHFFTQDSLKLIYGFGSQMFESGVTIALPLV 180 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 T LL +N+A G++ R AP L+IF +GFP+TL VG+ ++ + PL+ P + L LL Sbjct: 181 TALLLVNIAFGVVARAAPALNIFAVGFPVTLLVGLIMLVFITPLLYPNLQILMKATVELL 240 Query: 252 ADI 254 A + Sbjct: 241 AQL 243 >UniRef50_Q1N2V1 Flagellar biosynthetic protein fliR n=1 Tax=Bermanella marisrubri RepID=Q1N2V1_9GAMM Length = 262 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 140/255 (54%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 +L + S + SW++ Y WP R P+ R V RV+L LA + + P LP Sbjct: 8 LLDINSAEVSSWVSRYLWPFFRFAGFFMVLPLFGTRLVTARVRLFLAFFTSILVTPLLPP 67 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S + + QQILIGIALGF ++ G++I +Q GL A VDP + Sbjct: 68 MPVIDAVSVQTMVIIAQQILIGIALGFVVEILMQIFILCGQLIAMQTGLGMAMMVDPTNG 127 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +N+ V+A+ + A LLF+T NGHL I +L D+F T+P+G +++N ++ + + Sbjct: 128 VNVAVVAQWFLIFANLLFITLNGHLVAIEILADSFFTIPVGEGTISTNVMWSIVELAHWM 187 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F ++LALP IT +L +N+A G++ R+APQL+IF +GFP+T+ +G+ ++ Sbjct: 188 FSAAIVLALPAITSMLVVNIAFGVMARLAPQLNIFAVGFPVTMLLGLIVLWIAFSGFGAE 247 Query: 240 CEHLFSEIFNLLADI 254 L +E+F + Sbjct: 248 FGRLLTELFYFMRSF 262 >UniRef50_B5EEM8 Flagellar biosynthetic protein fliR n=2 Tax=Geobacter RepID=B5EEM8_GEOBB Length = 261 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 135/260 (51%), Gaps = 2/260 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q L+ L L RV L S P+ R VP RVK+GL +T I P + Sbjct: 1 MFQNLPLTSLADLIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKP 60 Query: 61 NDVPVFS--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + VP S + L +Q+ LIG+ LG QF FAAV G+++G QMG+S A DPA+ Sbjct: 61 HVVPNVSDSLGLMLLVLQETLIGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPAT 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 N+P +A LA LLFL FN H + I +VD++ +P+G ++ L + + Sbjct: 121 QNNVPTMAIFQGALATLLFLAFNVHEYFIRGIVDSYRVVPLGAWHVSGGLLKFLVETSTG 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 IF+ + LA P+ LL ++ALG++ R P +++F++ PL + +G ++ +P+ Sbjct: 181 IFIIAIKLAAPVSVALLATSVALGIVARSFPAMNVFMVSMPLNIGIGFVILGISLPVFVR 240 Query: 239 FCEHLFSEIFNLLADIISEL 258 + F ++ + + + L Sbjct: 241 VLQGSFGQVVDQMRTLFRLL 260 >UniRef50_A4SI10 Flagellar biosynthetic protein fliR n=4 Tax=Gammaproteobacteria RepID=A4SI10_AERS4 Length = 260 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 134/253 (52%), Gaps = 2/253 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 +L +++ +WL ++WP +R+ P+ + +P +V+L A +I+ IAP L Sbjct: 4 LLSLSAADLTAWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLFAFIISLLIAPMLKE 63 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V FS AL L V+Q+L G+ G +Q F + AG+I+ +QMGL+ A DP++ Sbjct: 64 MPVVDPFSTGALVLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGLAMAVMNDPSNG 123 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + P+++++M + LLFL NGHL + +LV + + P G L+ + Sbjct: 124 DSAPIVSQLMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSS-LDLLDMKGVIGLFGWC 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L+L LP + +L +NL G++NR AP L+IF +GFP+TL +G+ MA + + Sbjct: 183 IGAALILTLPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPAR 242 Query: 240 CEHLFSEIFNLLA 252 L + + L Sbjct: 243 YLDLVTHVLEQLR 255 >UniRef50_C8W1H1 Flagellar biosynthetic protein fliR n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1H1_DESAS Length = 255 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 141/251 (56%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFS 67 + L ++F +R+ A + TAP R++P +K+G ++++ + P + + VP Sbjct: 4 MDLLVVFFLVFIRITAFMMTAPFFEYRNIPNLLKIGFSLLLAGIVFPVIKTSGFSVPGGV 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + +G+ LG F F +R AG++I LQ+G + A DP S + ++AR Sbjct: 64 LGYILAVMAEAGVGLMLGLIASFIFHGIRMAGQLIDLQIGFAMAMVFDPLSEMQTTIIAR 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++LAL+ FL NGH +LI LV ++ +P+ + S L + K S +F ++ Sbjct: 124 FLNLLALIFFLNVNGHYYLIESLVKSYDLVPLTAMAIKSGVVLTVVKFFSGMFALAFQIS 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P+I +L+ ++L+LG ++R PQL++F++GFP+ + VGI ++ ++P++ + +F + Sbjct: 184 APIIAVLVIIDLSLGFVSRTVPQLNVFMLGFPVKIVVGILTLSVVVPVLGTLLQDVFKTM 243 Query: 248 FNLLADIISEL 258 N + ++ L Sbjct: 244 HNNMLILLRGL 254 >UniRef50_Q3J976 Flagellar biosynthetic protein fliR n=3 Tax=Gammaproteobacteria RepID=Q3J976_NITOC Length = 236 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 128/230 (55%) Query: 28 STAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFT 87 P+ + VP R++L LA+ +T IAP +PA V S L +QQ LIG A+ Sbjct: 1 MAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGGLLVMQQFLIGFAMALV 60 Query: 88 MQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLI 147 +Q F A G+I+ QMGL FA+ +DP + + + +++++ +L L+FL NGHL +I Sbjct: 61 LQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVFLGLNGHLVVI 120 Query: 148 SLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRM 207 +L ++F+ LP+G E + F L AGS + +++ALP I L +NL G+++R Sbjct: 121 QVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIALPAIGALSLVNLTFGVMSRA 180 Query: 208 APQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISE 257 APQL+ F IGFPLTL +G ++ +P +L L+ + E Sbjct: 181 APQLNPFSIGFPLTLILGFWVLLFTLPNAPSHLVNLTDTALTLIRAWLEE 230 >UniRef50_A5F6D9 Flagellar biosynthetic protein fliR n=62 Tax=Vibrionales RepID=A5F6D9_VIBC3 Length = 260 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 144/257 (56%), Gaps = 2/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 ++ + L ++ YFWP R+ A++ + R VP RV+L L + +TFA+ P++PA Sbjct: 1 MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 +D+ + S + +QI+IG+A+G QF G+I+G+Q L FA+ VDPA+ Sbjct: 61 PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 N P+L ++ +LA L FL +GHL +I L+V +F +LPIG L + F L ++ Sbjct: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F L ++L I LLT+NL+ G++ R APQL+IF +GF L VG+ L ++ + Sbjct: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240 Query: 240 CEHLFSEIFNLLADIIS 256 + + E + +I Sbjct: 241 YDIYWQEAEEQVCRLIR 257 >UniRef50_UPI00016952B2 flagellar biosynthesis protein FliR n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016952B2 Length = 259 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 4/253 (1%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67 +WL L R+ A P S R+VP + K+GL+++IT + +L N+ Sbjct: 2 EWLQLLPNAMLVFCRITAFFVVVPTFSSRNVPSQFKIGLSLVITLIVFTALGMNNPVTMD 61 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L ++IL+GI LGF F AV+ AG I +QMG A +DP + + P+L Sbjct: 62 GTYLLAIFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGASAPILGN 121 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN----SNAFLALTKAGSLIFLNG 183 M+A LLFL+FNGH L+ +++++ +P+ E + ++ + +F Sbjct: 122 FKYMIATLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFTTMFGLA 181 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 LA P+ L +L LGLL R+APQ +IFV+G P + +G L+ L+P + E + Sbjct: 182 FQLAAPIAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELGSMFEKV 241 Query: 244 FSEIFNLLADIIS 256 F+ +F + + + Sbjct: 242 FTTMFAWMKNGLQ 254 >UniRef50_C0ZF83 Flagellar biosynthetic protein fliR n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF83_BREBN Length = 260 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 131/253 (51%), Gaps = 3/253 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 +L +L ++ +R+ A TAP S R VP + K+ LA +I SLP Sbjct: 4 FLMYLPIFMLVFVRMSAFFVTAPFFSIRGVPNQFKIALAFIIAVISFQSLPVQGEIPMDL 63 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + +++ L+G+ LG+ + F A++ AG ++ +QMGL+ A +DP + +PV Sbjct: 64 TFVMYVIKEALVGVILGYICEMMFIAIQVAGGLMDMQMGLAMANVIDPKTGAYIPVTGNF 123 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIG---GEPLNSNAFLALTKAGSLIFLNGLM 185 ++LA+L F + +GH LI ++ ++ +P+ + N + K +F + M Sbjct: 124 KNILAVLYFFSIDGHHMLIRGVISSYQVIPVDIMWAAFGSENVMMTAVKTFLTMFTSAFM 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 +A P++ L ++L+LG++ + PQ +IFV+G P+ L G L+ +MP LF Sbjct: 184 IAAPIVVALFLVDLSLGIIAKSVPQFNIFVVGLPIKLLAGFLLLIVVMPAFLLTLNGLFG 243 Query: 246 EIFNLLADIISEL 258 +F LA+++ L Sbjct: 244 NMFRALAEMMKSL 256 >UniRef50_Q2RZE7 Flagellar biosynthetic protein fliR n=2 Tax=Rhodothermaceae RepID=Q2RZE7_SALRD Length = 258 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 3/251 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFS 67 ++ +RV L+ AP ++++P RV++ ++++ +++A P + Sbjct: 6 TEYILRVLLVFVRVSGLMLAAPFFQQKTIPVRVRVLASVVLAYSLAGFATGPLPEHVTHD 65 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + + G+ +GFT + F AV AG I+G QM LS A +P S + L + Sbjct: 66 VGFMLVVLVEAGTGLVMGFTARIIFWAVSFAGTIMGYQMALSLAQTYNPISGTSSNPLGQ 125 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 I+ LL FL +GH +L+ L +F +P+GG L S A + F + LA Sbjct: 126 ILSYTFLLAFLLADGHHFLLRALAQSFEVVPLGGAEL-SGAGPPMLGWMGDFFRLAVRLA 184 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P + +L ++ALG+ R+ PQ ++F + P L VGI + + PF LF EI Sbjct: 185 APFLVILFLTDIALGIFARLVPQANLFTLSLPAKLLVGIGIFLVFIQGAVPFFPSLFGEI 244 Query: 248 FNLLADIISEL 258 ++ +++ + Sbjct: 245 EQMVHEVLRII 255 >UniRef50_C6BYP0 Flagellar biosynthetic protein fliR n=4 Tax=Desulfovibrionales RepID=C6BYP0_DESAD Length = 267 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFSFFA 70 L ++ L RV ++ P S+PK VK L +++T I P + + +P + Sbjct: 11 LMSFYLTLFRVSIVLFLLPFFGGNSIPKTVKAALTIVLTLGIWPHVTFEGSLMPASPYNI 70 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + + ++++G+ +G ++ FAA++T G +IG+QMG S +DP + N V A + Sbjct: 71 ALMILGEMVLGLVMGISVHVMFAAIQTGGNLIGVQMGFSMVNVLDPLTGTNEAVTAHFLY 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 M A+L+FL+ NGHL+L+S +V++F +P G ++S + +F+ + +A P+ Sbjct: 131 MCAILVFLSINGHLYLMSAMVESFKYIPPGQIFISSTLTSQIMSISKDLFVLAVKVASPI 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 I + ++L L L+++MAPQ+++ ++GFPL + G +++ + +++ +++ Sbjct: 191 IATIFVVDLGLALISKMAPQMNVLMLGFPLKILAGFFVLSLVFTVLSLHVGEFVADLPKY 250 Query: 251 LADIISE 257 L II Sbjct: 251 LLSIIKA 257 >UniRef50_UPI0001BC2FF2 flagellar biosynthetic protein FliR n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2FF2 Length = 258 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 1/256 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 E L++ ++ L+R+ + + TAP + + P+R KLGLA I+ + +P + Sbjct: 2 FNYEVALNYWEVFLLILVRIASFVYTAPFFNMANTPQRTKLGLAFFISLIVFTLVPDRTL 61 Query: 64 PVFS-FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 S L +++ ++G+ LGF+ + AG II +GLS A+ DP Sbjct: 62 EYSSILEYAILVIKESVVGLLLGFSCMVCVQTITFAGNIIDSNIGLSMASEYDPTLRDQT 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 V + LL + + +LIS +VDT+ +PI G +N + + ++ S F+ Sbjct: 122 TVSGTLYYYTVFLLLMVSGLYQFLISAIVDTYTIIPINGLSVNPSLYSSVVTLVSDYFII 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 G +ALP+ LL +N LG+L ++A QL++F +G + + G+ +M + L+ Sbjct: 182 GFRIALPVFVSLLIVNCVLGILAKVASQLNMFAVGIQIKILAGLVIMFVTVGLLPQIANF 241 Query: 243 LFSEIFNLLADIISEL 258 ++ I + I L Sbjct: 242 IYQNIKAAVKLIAGGL 257 >UniRef50_B3EAW1 Flagellar biosynthetic protein fliR n=7 Tax=Desulfuromonadales RepID=B3EAW1_GEOLS Length = 265 Score = 152 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 134/248 (54%), Gaps = 2/248 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSFFA 70 + L+ L R+ L + P+ + +P R+K+ + IT P L +P +F Sbjct: 14 VFLFALILCRIGGLFAALPVFGGKRLPTRIKIAAVLAITLVCLPVLKITPPPLPGDAFTL 73 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L ++++LIG+ L F Q FAAV +G+IIGLQMG S ++ +DP+ +++ + Sbjct: 74 GLLVMREMLIGLTLAFITQIIFAAVEFSGQIIGLQMGFSISSVLDPSMGTQTQIMSVVQS 133 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +LA L FL+ N H IS +VD+F +P+GG ++ L A S +F+ G+ LA P+ Sbjct: 134 LLATLFFLSLNIHHVFISAIVDSFTVIPLGGWKMSEALIHFLVNATSEVFILGIRLAAPV 193 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + LL ++ LG++ R PQ+++F++ FPL + +G ++ + L E F + N Sbjct: 194 MVALLLTSVVLGIMARAFPQMNVFMVSFPLNIGLGFMVLGMTLLLFFHVLELSFGNLANQ 253 Query: 251 LADIISEL 258 +A I L Sbjct: 254 VAMIFRLL 261 >UniRef50_C8WYW7 Flagellar biosynthetic protein fliR n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW7_DESRD Length = 260 Score = 152 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 + +RV A+I + P+LS P R++ GLA+++ I P++ D+ Sbjct: 4 EALLSQHWPSFLLCFIRVAAIIGSMPVLSGGQTPARLRAGLALVLAVIIFPAVDGTIPDI 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 L Q++L+G+ LGF + F A + G I+G QMG + A +DP S + Sbjct: 64 NFAPLRLFVLGSQEVLLGLMLGFIGRLLFLAAQFGGTILGFQMGFAAANILDPQSQQQIQ 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++++ ++LA L+FL +GH + L +F +P GG +A ++ +F+ G Sbjct: 124 LMSQFQNVLASLVFLAVDGHHVFLRSLARSFEVVPPGGGLHLQDAVPSMVAMTGEMFVLG 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 L L P+ +L+ + LG+++R+ PQL+ F++ FP+ + V + I Sbjct: 184 LQLTAPIYVILILSDFILGIMSRIFPQLNAFMLKFPINIGVAFFFLGLSAEFIVSILISE 243 Query: 244 FSEIFNLLADIISEL 258 F+ + L + + Sbjct: 244 FNGLAQRLVEFFELV 258 >UniRef50_B8CKZ1 Flagellar biosynthetic protein fliR n=22 Tax=Gammaproteobacteria RepID=B8CKZ1_SHEPW Length = 266 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 146/256 (57%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 + + + + + Y WPL R+ ++ + + P RV+L L++ +T A+ P LP Sbjct: 1 MNILLDTIMGGIAGYMWPLTRISSMFMVMAVFGANTTPSRVRLLLSLTVTAAVVPVLPPM 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 D+ +FS A+++ QQI+IG+++GF+ G+IIG+Q L FA+ +DP S Sbjct: 61 PDIELFSLSAVFVTFQQIIIGVSMGFSTLLLMQTFVLTGQIIGMQTSLGFASMIDPGSGQ 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 PV+A +L ++FL +GHL LI ++V +F ++P+ E L+ ++ T+ +F Sbjct: 121 QTPVVANFFLLLTTMIFLAVDGHLILIKMVVASFDSIPVSMEGLSLASYRMFTEFVGYMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L ++L I LLT+NL+ G++ R +PQL+IF IGFP+T+ G+ ++ + I Sbjct: 181 GAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVSGLFILWLTLTPIMAHF 240 Query: 241 EHLFSEIFNLLADIIS 256 + ++ E+ LL +++ Sbjct: 241 DEVWREVQILLCNVLE 256 >UniRef50_Q1IR58 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR58_ACIBL Length = 253 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 124/243 (51%), Gaps = 1/243 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E W+ R+ AL+ AP S ++P RVK GL +++T + PS+ + V + Sbjct: 2 EPLEVWVQSIVLVGTRIAALVLFAPFFSHAAIPPRVKGGLVVLLTILLYPSVISATV-LS 60 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + + + + IG+ +G + F AV+ AG+ +G+++GLS + +DP + + PVL+ Sbjct: 61 ASEVVGVVLHETFIGMLIGLSSVLVFEAVQFAGQCLGIEVGLSLVSVLDPQTQADSPVLS 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 ++ + LLLFL N H WL+ L D++ +P G L L + +IF G+ + Sbjct: 121 VLLQTILLLLFLDLNVHHWLLRALADSYRLIPPGAGRLTGVVVQDLFQQAGMIFALGVQI 180 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 A P++ L ++ L + +PQ+ + ++G P+ +G++ + A + + F+ Sbjct: 181 AAPVLAATLLADIVFAFLAKASPQMPVLLLGMPVKFVLGLTTLWAGLRFWPVIFDRNFAL 240 Query: 247 IFN 249 Sbjct: 241 ALQ 243 >UniRef50_A4J751 Flagellar biosynthetic protein fliR n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J751_DESRM Length = 255 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 130/238 (54%), Gaps = 2/238 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFS 67 L ++ +F +R+L+ I + P+ + +P VK GL++++ AP + A P Sbjct: 4 LVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGL 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + ++ +G+A+G F F A+R AG+++ Q+G + A +DP +++R Sbjct: 64 WGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSR 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + + L+L++ +GH LI LV ++ +P+ +N L + + + F + + Sbjct: 124 FLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAVQIC 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 P++ +L+ +LA+GL+ + APQL+IF +GFPL + VG+S +A L+P + ++LF Sbjct: 184 APVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLFD 241 >UniRef50_A4Y0Q5 Flagellar biosynthetic protein fliR n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q5_PSEMY Length = 264 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 144/256 (56%), Gaps = 3/256 (1%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-ND 62 + + Q+L+ L Y+WP R+LAL+S AP+ + ++V RV++ LA+ +T A+ +LP Sbjct: 6 LHASQYLTSLQAYWWPFCRILALLSMAPLFNHKAVSVRVRILLALALTVALGAALPDMPP 65 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH-LN 121 + S L A++QI G+ LG T+Q F GE++ QMG+S A + DP + + Sbjct: 66 IDPLSLQGLMTALEQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSS 125 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++ ++ +L +LLF +GHL +S+L +F P+G L+ + +A + + Sbjct: 126 SSIVYQLYFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSG-LHYLGAQSFVQAFAWVLA 184 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 +++ LP++ L + GLLNR++P +++F +GFP+++ +G+ + +P + Sbjct: 185 AAVLVTLPIVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDSYL 244 Query: 242 HLFSEIFNLLADIISE 257 HL E+ N + I+ E Sbjct: 245 HLTRELLNGIGVILHE 260 >UniRef50_Q3V7F9 Flagellar biosynthetic protein fliR n=5 Tax=Legionella RepID=Q3V7F9_LEGPA Length = 256 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + + + ++ + WP++R+ L+ T P+LS +P R+K+ ++ +P N Sbjct: 1 MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN 60 Query: 62 -DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 F+ L VQ++L+G+ +GF +Q F G+II +Q GL FA VDP S+ Sbjct: 61 LSFENFNGLYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++P+++++ M+ L+FL NGHL ++ L+++F +PIG L+ + + +F Sbjct: 121 SVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIVWSTIMFSGWMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +++++P I LL ++L+ G++ R+APQL++F +GFP+TL +G ++ +P + Sbjct: 181 KEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM 240 Query: 241 EHLFSEIFNLLADIIS 256 + I+ Sbjct: 241 VESIKHGIQFITGILR 256 >UniRef50_B8FTQ3 Flagellar biosynthetic protein fliR n=2 Tax=Desulfitobacterium hafniense RepID=B8FTQ3_DESHD Length = 260 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 4/255 (1%) Query: 7 EQWLSW-LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 ++L W L L+ L R +I AP+ R VP VKLGLA+ I+ + P + A + Sbjct: 4 AEFLQWNLTLFLLILSRWAGMIMLAPVFGARGVPAMVKLGLAVSISIILYPLIMAAGPQI 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + L +++I++G+ +GF + A + AG++I +QMG + + +DP + Sbjct: 64 PSETLPYAALLIKEIVVGLVIGFVIYAITAVLEGAGQLIDMQMGFNMSGAIDPIFGVQSA 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++ +LA++L L N H +LI+ +V ++ +PI L IF Sbjct: 124 MMGNFQMILAIMLLLATNSHHYLIAAMVKSYTYVPINPGALPQG-LNYYIFLIREIFTLS 182 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + LALP+I L+ ++ +GLL R PQ++IF + FP+ + G +++ + L Sbjct: 183 VQLALPVIGALVLTDIGVGLLMRTVPQMNIFTVIFPVKIIFGFTILFLGIGFFGETVNML 242 Query: 244 FSEIFNLLADIISEL 258 F L ++ Sbjct: 243 FERAMTWLLELYKGW 257 >UniRef50_Q1YV75 Flagellar biosynthetic protein fliR n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV75_9GAMM Length = 256 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 140/255 (54%), Gaps = 1/255 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + + + WP++RV A + +P S R+V RV++ LA ++T I P + Sbjct: 1 MDILVAEVVQRFYTLLWPMIRVSAFLLASPFFSLRAVNVRVRVLLAALLTLMIYPLVDWP 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + +S L QILIG +G +Q A++ G+ + MGL A +DP N Sbjct: 61 IIDPYSAAGLREIFNQILIGTVMGMLLQIVNASLVIGGQAVSSAMGLGMANMIDPNMG-N 119 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +PV+++ + + L+F+ GH+ +ISL++++F TLP+G L + S+IFL Sbjct: 120 VPVISQFFIICSTLIFMGIGGHVLVISLILESFKTLPVGQMLAPDMLMAVLLQWSSMIFL 179 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 GL+LALP++ LL +N+ +G++ R AP L+IF +GFP + VG+ L+A M I + Sbjct: 180 GGLLLALPIMVSLLFVNIGVGVITRAAPALNIFAVGFPAMIMVGMVLLATSMTSIGYRIQ 239 Query: 242 HLFSEIFNLLADIIS 256 L+ E FN++ + Sbjct: 240 WLWRESFNVVGQALG 254 >UniRef50_A8U5W1 Flagellar biosynthetic protein fliR n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5W1_9LACT Length = 250 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 118/247 (47%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 L +RV + I +P S + +P K+ L+M IT A ++P + + Sbjct: 4 QLQTIILIFIRVTSFIVVSPGFSFKGLPSVAKIALSMGITLAAYSAVPVMEQEAGTVLFA 63 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L ++++L+GIALGF + F AV AG + Q+G S DP+ +N+ +I Sbjct: 64 VLVIKEVLLGIALGFITKLFFTAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGKIYYW 123 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L++ +F N H +I LV +F T+PI L + K +IF +A+P++ Sbjct: 124 LSMCVFYLTNLHHVVIKSLVKSFTTVPISNSNLGDFGVEGMMKLLGIIFEIAFNIAVPMM 183 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + L + LGL++R PQ+++ ++G PL + ++ L+P + + + + Sbjct: 184 IVALLTEVILGLISRSVPQINVLILGMPLKIVASFVMILVLLPTLVKNIQTTLPLMVKYM 243 Query: 252 ADIISEL 258 + + L Sbjct: 244 NEFMQSL 250 >UniRef50_C4V4A3 Flagellar biosynthetic protein fliR n=3 Tax=Selenomonas RepID=C4V4A3_9FIRM Length = 260 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 136/255 (53%), Gaps = 3/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA---NDV 63 E + ++ L+R + +P ++P ++G A+ +T + P + V Sbjct: 5 ELLQGHIAVFLLMLVRTSGIFLISPFFGSMNIPIFFRVGTALSMTVVLFPVVDGLGTPYV 64 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P AV ++ IG +GF +FAA+ AG+++ +Q+G + VDP S +P Sbjct: 65 PENLIMFALTAVGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIP 124 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++ + LA ++ L NGH +++ LV++F +PI G N + L + IFL G Sbjct: 125 LIGSFLYNLAAIILLATNGHHMILAALVESFRAVPIAGMEGNVSLALLIANFTGTIFLTG 184 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + +A+P+ +L N+ LG+L+R PQ++IFV+G PL L +GI++++ ++P F + L Sbjct: 185 MKIAMPITFAILLTNVGLGILSRTMPQMNIFVVGIPLQLMIGITVLSMIIPFYVLFLDVL 244 Query: 244 FSEIFNLLADIISEL 258 F+E++ ++ I L Sbjct: 245 FNEMYGNISLAIRAL 259 >UniRef50_A4XIZ3 Flagellar biosynthetic protein fliR n=2 Tax=Clostridia RepID=A4XIZ3_CALS8 Length = 260 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 126/250 (50%), Gaps = 1/250 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFS 67 +L+ ++F L R+ + +PI R++P K+GLA ++ + VP Sbjct: 8 FLNGSYIFFLVLARMSGIFIASPIFGRRNIPAYFKIGLAFFLSIIVVLLYHFEYTVPQNL 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 +++ ++ ++GI +GF F+ + AG+II +G A +DP S + +P+L Sbjct: 68 LEFIFVVTKEFIVGIIIGFISYMIFSTILLAGQIIDNAIGFGIANVIDPMSEIQVPLLGN 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + + L++F + H LI +V ++ +P+G + +F+ G+ ++ Sbjct: 128 FLYLYMLVIFFATDAHHTLIRAVVYSYKVVPLGYSNILPKLSQKFITFFIELFVIGIEIS 187 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP++ +L +++ LG+L+R PQ+++F++G P+ + +G ++ ++P++ L ++ Sbjct: 188 LPILMSMLIVDIILGILSRAVPQMNVFMVGIPIKIAIGFVVLVIVLPIMNKMIFVLLDKL 247 Query: 248 FNLLADIISE 257 D + Sbjct: 248 SYYTFDALRG 257 >UniRef50_Q2ITJ3 Flagellar biosynthetic protein fliR n=15 Tax=Bradyrhizobiaceae RepID=Q2ITJ3_RHOP2 Length = 283 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 2/252 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ + + RV A++ P L E ++P R+KL +A+ +T I P Sbjct: 29 MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNA 88 Query: 62 DVPVFSFFA--LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 S L L +Q+I+IGI LG T + +A++ AG +I Q+GL F T VDP Sbjct: 89 YQVDMSSLTPLLVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQG 148 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++ + +L + + + H +I L D++ G + + TKA + Sbjct: 149 QQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAAS 208 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G+ LA P + L N+ LG+L R+ PQ+ ++ +G PL++ +G + AA++ + Sbjct: 209 FKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT 268 Query: 240 CEHLFSEIFNLL 251 F + L Sbjct: 269 FLAYFGGVMQEL 280 >UniRef50_Q3V824 Flagellar biosynthetic protein fliR n=4 Tax=Bacillaceae RepID=Q3V824_BACSK Length = 260 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 125/255 (49%), Gaps = 4/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 ++WL+ + +RV + P+ + R+VP +KLGL+ + +A SL ++ Sbjct: 2 DEWLTLYPAFLLIFIRVSSFFVVLPLFNHRTVPAPLKLGLSAFLAATLAVSLDVPEL-AL 60 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 L LA+++ IGIA G AV+ AG +I +G A VDP + P+ Sbjct: 61 DLPFLLLALKEFAIGIAAGLMASMILYAVQVAGGVIDFHLGFMLANVVDPQTGAQSPLTG 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN---SNAFLALTKAGSLIFLNG 183 + + A+L L +GH L+ ++ ++ +P+ L + +T+ ++F Sbjct: 121 SYLYLFAMLYLLIIDGHHLLLDGVIYSYQFVPLDQLVLPFGSGHVMEHVTQVMVMLFAMA 180 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + +A+P+ L +++ALG+++R PQ+++FV+G P+ + G + A + + L Sbjct: 181 VSMAMPVAGALFLVDVALGIISRTVPQMNVFVVGIPIKMLAGFIVFAIYIGVFFMSVNVL 240 Query: 244 FSEIFNLLADIISEL 258 F E+ + ++ L Sbjct: 241 FEELLLAMRRLLEGL 255 >UniRef50_A6TRN9 Flagellar biosynthetic protein fliR n=2 Tax=Alkaliphilus RepID=A6TRN9_ALKMQ Length = 263 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 3/260 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + T Q LS ++++ ++R+ + API S ++P K+ ++ + I P + + Sbjct: 1 MDDTITQILSNIDIFILLIVRISGIFIIAPIFSRNNIPMMSKIIFSVFLALIILPLVTIS 60 Query: 62 D--VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + F + A+Q+ +GI +GF F+ AG I+ Q+G DP + Sbjct: 61 EDFAANTFFALMVYAIQEFALGITIGFIGSIYFSTFYLAGMIVDTQIGFGMVNVFDPQMN 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP-LNSNAFLALTKAGSL 178 +P++ + ++L L+FL NGH LI + D++ LPIG + ++ + LT Sbjct: 121 TQLPIMGNVYNLLISLVFLAVNGHHLLIKAMFDSYDVLPIGFQFQVSEALIMHLTIIFME 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 IF+ L+ P++ + N+ LG+L R PQ+++F++G PL + VG+ + +P + P Sbjct: 181 IFMMAFKLSAPILATIFLANVLLGILARTMPQMNVFIVGMPLKIIVGLVTIMIALPFLVP 240 Query: 239 FCEHLFSEIFNLLADIISEL 258 F LF ++F + II L Sbjct: 241 FGNALFEKMFTSIDHIIELL 260 >UniRef50_B3PF02 Flagellar biosynthetic protein fliR n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PF02_CELJU Length = 261 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 92/254 (36%), Positives = 160/254 (62%), Gaps = 1/254 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 ++ +Q + ++ Y WP+LR+ A P++ R+VP R++L L ++ F + P LP V Sbjct: 6 ISEDQLMQFIGQYIWPMLRIGAFYFAVPVIGARTVPARIRLILMLLTVFLLVPVLPPAPV 65 Query: 64 -PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + S L L Q++LIG+ALGFTMQ AG+ I ++MGL FA DP+S +++ Sbjct: 66 VSLLSLAGLMLIAQEVLIGLALGFTMQVVLHVFVLAGQYIAMKMGLGFAAMNDPSSGVSV 125 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 VL++ +L+ LLFL+ NGHL ++ L++D+F PIGG+ ++++A++ + + GS +F Sbjct: 126 TVLSQFYLLLSTLLFLSTNGHLVVLQLMIDSFRFFPIGGDGISTSAYMVIVQMGSWMFSA 185 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 L++ALPL T L+ +N++ G+++R APQ+++F +GFP+TL G++LM + P Sbjct: 186 ALLIALPLFTSLMIVNMSFGVMSRAAPQMNVFTVGFPITLVFGLALMYFSLGNFLPLYME 245 Query: 243 LFSEIFNLLADIIS 256 L E +L +++ Sbjct: 246 LMEEGIGILRNLVE 259 >UniRef50_C7RLB3 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RLB3_9PROT Length = 261 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 152/252 (60%), Gaps = 1/252 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 M+ +T+ + +W+ +F+PL RVLAL++ AP + ++P RV+L L + IT IAP LP Sbjct: 1 MISLTTAEINAWVVAFFFPLARVLALLAAAPPFNNPALPARVRLALGLAITIGIAPVLPL 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S + + Q+++IG A+GF M+ F+AV AG I+ L+MGL FA+ DP + Sbjct: 61 MPALDPASGAGMLILAQELIIGTAMGFAMRLVFSAVDMAGNIVSLEMGLGFASAYDPQTA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 V++ M +LALL+F+ NGHL +I+ L +F +PIGG L + + +L + +++ Sbjct: 121 GQTAVVSEFMGLLALLVFMAINGHLMVIATLTHSFSVIPIGGPRLGATTWSSLANSAAIV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL L LP+I L+ NLAL +L+R APQL++ IGFPLT+ +G + + + + Sbjct: 181 FSAGLFLVLPIIVALMISNLALAILSRAAPQLNLMAIGFPLTIALGFAALLFGLSYMGTP 240 Query: 240 CEHLFSEIFNLL 251 + LF + Sbjct: 241 LQELFENGLQSM 252 >UniRef50_B6AMB3 Flagellar biosynthetic protein fliR n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMB3_9BACT Length = 262 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 1/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA-L 71 L LY W L RV L+ + P+LS ++VP R+K +A+ + F I P + N P F A L Sbjct: 11 LLLYVWVLARVSGLVVSMPVLSGKAVPVRIKALIAVALAFLIEPVVLGNVSPPRLFSAWL 70 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 V + +G+ALGF+ FAAV AGE+ G+Q+G ++P +P+L + Sbjct: 71 GSLVTEFFVGVALGFSSYLVFAAVSFAGELAGVQVGFGLVDVINPLGLAEVPLLGTFQNS 130 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 +A L+FL H LI L ++ +P G + + + + G+ LA P + Sbjct: 131 VAFLVFLASGTHEALIWALGRSYAVVPPGEGRFRTIFYEGYLGVFAHFMVLGITLAAPFL 190 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + LNLA+G L+RM PQ+++ +GFP+ + G+ L+ +P + E F + L Sbjct: 191 VGGIVLNLAMGFLSRMMPQMNLISVGFPVLVLGGLGLLILSLPFLGSVLEDSFFRMDETL 250 Query: 252 ADIISEL 258 I+ + Sbjct: 251 GGILRLV 257 >UniRef50_Q5DY35 Flagellar biosynthetic protein fliR n=37 Tax=Enterobacteriaceae RepID=Q5DY35_ECOLX Length = 260 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 2/253 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q + ++P +R++A + P+L ++ RV++ L++ + I P +P Sbjct: 1 MRTSDVTQLMDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPH 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S +L L V+QIL G+ G QF F A++ AG+I+ MG+S A DP+S Sbjct: 61 PIPHDLLSLNSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + VLA ++++ A+LLF +GHL L+S+L F PIG L+ + A S + Sbjct: 121 ASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNA-LHPQTLRTIALAFSWV 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 + +LALP ++L + GLLNR+AP L++F +GFP+ + VG+ A L+ + Sbjct: 180 LASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDH 239 Query: 240 CEHLFSEIFNLLA 252 HL + + L Sbjct: 240 YLHLANFVLQQLD 252 >UniRef50_B1I5J9 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5J9_DESAP Length = 253 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 129/248 (52%), Gaps = 1/248 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + L + R+ A I+ P+ + R +P VK GLA +++ A+ PS P+ SF Sbjct: 1 MEQLVTFLLVFTRLAAFIAACPVFAMREIPPTVKAGLAFVLSLALLPSAGTAAPPLDSFL 60 Query: 70 ALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 LA+ ++ +G+ LG F + AG+ IG Q+G + A + P + +++R+ Sbjct: 61 GFSLALAKEAAVGLGLGIFTSLVFHGLLLAGQYIGFQIGFAIAEMMSPGTEGERAIVSRL 120 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 M + AL+ F++ +GH LI+ L +F +P+G L + KA +F+ L +A Sbjct: 121 MWLFALVFFVSIDGHHLLIAGLAKSFELVPLGAAVAQMKTTLFMAKAYGGLFVIALTIAA 180 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ +LL + LGL+ RM PQ+++F++GFP + G+ + +P+I +F + Sbjct: 181 PVMAVLLVTDAILGLMVRMVPQINVFMLGFPFKVFAGLFALMVTIPVIGWALTRVFGRMT 240 Query: 249 NLLADIIS 256 L ++ Sbjct: 241 EDLLVLMR 248 >UniRef50_B9KJE3 Flagellar biosynthetic protein fliR n=4 Tax=Rhodobacter sphaeroides RepID=B9KJE3_RHOSK Length = 269 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 1/241 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-SFFALWLAV 75 F LR+ A + +P R VP V++ +++T + + S A+ L + Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTLPVLGRVELPPPEALASLAAIPLMM 82 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 Q+I +G++ G + F+A AG+ I GL FA +DP++ PV+A+I + Sbjct: 83 QEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLALTT 142 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 +FL +GHL + +L+ ++ +LP G A AG +FL GL + +P++ L+ Sbjct: 143 VFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVVAALI 202 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADII 255 +N+ +G++ R APQL++F GFP+T++ + L+ P L E LA ++ Sbjct: 203 LINVTIGIVTRSAPQLNVFSFGFPVTMSATLILLFLTAPGTMGAFSGLVEESLTALAGLL 262 Query: 256 S 256 Sbjct: 263 G 263 >UniRef50_C6D2V4 Flagellar biosynthetic protein fliR n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2V4_PAESJ Length = 264 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 133/255 (52%), Gaps = 5/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPV 65 +Q + + ++ R+ + AP+ + R VP K+GL ++ + + Sbjct: 2 DQIVEYFPIFLLIFCRMTSFFVVAPLFNMRGVPSTFKIGLGFFLSLIVFMTYGLKEQTVP 61 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + +++LIG+ +G+ + V+TAG ++ +Q+G + + +DP + ++ P+L Sbjct: 62 MDAEYILYIFREVLIGLLMGYIVYLFMTVVQTAGALMDMQIGFAMSNVIDPMTGVSAPLL 121 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN----SNAFLALTKAGSLIFL 181 ML +++FL NGH +L++ L+D++ +P+ E + + L++A FL Sbjct: 122 GNFKYMLLIMVFLAVNGHHYLLTGLMDSYKWMPLSNELFSRIYDGSITDFLSRAVGNAFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + +A PL+ + ++ LG L + APQ ++FVIG PL L +G+ L+ ++P I+ E Sbjct: 182 LAMQVAAPLVIAMFLTDVGLGFLAKTAPQYNVFVIGIPLKLLLGLGLLILVLPGISAIFE 241 Query: 242 HLFSEIFNLLADIIS 256 LF+ +F+ L + Sbjct: 242 RLFAIMFDNLEQLFG 256 >UniRef50_Q0AYL9 Flagellar biosynthetic protein fliR n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYL9_SYNWW Length = 253 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 L +F+ L R+ L TAPI S R +P RV+ + +M+ +A +P + L+ Sbjct: 5 LESFFFLLARLSGLFITAPIFSSRMMPGRVRALIVIMLAATLAYFVPVEYSRNINTPGLF 64 Query: 73 LAV--QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 +A +I IG +GF + A ++ +G+++ + MG S VDP S +P++ Sbjct: 65 IAALAVEIFIGYTIGFVIYAVLATIQLSGQLMDMLMGFSIVNVVDPQSGTQIPLMGNFTQ 124 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 LALL +L +GH +L+ L ++ +P+ L L + G+ IF+ + +A P+ Sbjct: 125 ALALLTYLAIDGHHYLLQALAQSYAIVPVMSAHLPGGFLELLVEVGTYIFVVAVKIAAPM 184 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + +LT ++A+G + R PQ+++F++G PL + +G+ + L+P+ LF+E F Sbjct: 185 LVAILTSDVAMGFIARTVPQMNVFLVGLPLKIFLGLITLLLLLPIYLWVYNVLFAEFFGY 244 Query: 251 LADII 255 L II Sbjct: 245 LDRII 249 >UniRef50_A3V236 Flagellar biosynthetic protein fliR n=3 Tax=Rhodobacterales RepID=A3V236_9RHOB Length = 275 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 1/252 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + + ++ ++F LR+ A +AP ++P +V++ +++ I F + D Sbjct: 20 QSLIDFMLVFFLHTLRLSAFFLSAPFFGAAAIPVQVRVIVSVAIAFGFYGLIDVPDPQNL 79 Query: 67 SFF-ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 F + +A+ +++IG++LG AF+AV GE I GL FA +DP S PV+ Sbjct: 80 PFLSMIEVALIEVVIGLSLGLAFTIAFSAVALTGEKIAASAGLGFAAQMDPNSGGQTPVI 139 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 ++ +++ A+ FL+ +GHL +I L+ ++ LP+G S A +F Sbjct: 140 SQFLNLFAIAAFLSLDGHLHMIGLIRMSYEVLPLGQPFKFSAFITGGLAAAGHMFTIASQ 199 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L LP++++LL N+ +G++ R APQL++F GFPLT+ + A + Sbjct: 200 LMLPVVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYVSTAPFASGIAEMIE 259 Query: 246 EIFNLLADIISE 257 I + D I E Sbjct: 260 FILEFIEDTIGE 271 >UniRef50_C7I0T6 Flagellar biosynthetic protein fliR n=1 Tax=Thiomonas intermedia K12 RepID=C7I0T6_THIIN Length = 266 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 101/260 (38%), Positives = 154/260 (59%), Gaps = 3/260 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ TS Q +W+ +FWP LRVLA++S AP+ S S+P V++GLA++I AIAP+LPA Sbjct: 1 MIHFTSTQIETWIGAFFWPFLRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPA 60 Query: 61 NDVPVFSFFALWLAVQQIL-IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 F W+ + Q L +G A+G +M +AV AG +IGLQMG+ FAT DP Sbjct: 61 MPPVQFGTATAWMLLLQQLLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGS 177 + + LA ++M+ +LLFL NGHL L++++ +F LP+ F + GS Sbjct: 121 VQVTSLASFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGS 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 IF GL LA P+I +LL NL LG+L ++APQL++F +GFP+ +G + +MP++ Sbjct: 181 AIFSLGLALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQ 240 Query: 238 PFCEHLFSEIFNLLADIISE 257 +HL +L ++ + Sbjct: 241 NVVQHLVDVGLSLSGQVLQQ 260 >UniRef50_B0MPC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPC9_9FIRM Length = 262 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 1/253 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV-PV 65 + L+ + + RV + S PI S + P R++ G + + A S+ P Sbjct: 8 DMILNNFLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGNIKYEPT 67 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 F L+ ++++ +G+ LGF + A +AGE+I Q GLS A +DPA+ ++MP+ Sbjct: 68 GIFMMLFDMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLF 127 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 A + + +L F NGHL I L ++ TLPIG ++ AL S + + Sbjct: 128 ANVYYYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVK 187 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA P+I + + LG+L + P + IF + L + +G++ + + ++ F E L Sbjct: 188 LAAPIIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIEKLMG 247 Query: 246 EIFNLLADIISEL 258 ++ L ++ + Sbjct: 248 IMWQNLYGLLGMM 260 >UniRef50_Q2BJ96 Flagellar biosynthetic protein fliR n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ96_9GAMM Length = 256 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 146/256 (57%), Gaps = 1/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML+++ Q W+ + WPL R+ + P+L + V R++L LA+ +T IAP LP Sbjct: 1 MLELSILQIEQWVAAFLWPLFRIGSFFMAVPLLGSQLVNARIRLMLALAVTAVIAPMLPE 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 S + + QQ+++G LGF Q + G++I +QMGL FA+ DPA+ Sbjct: 61 MPAFNGLSVESYLIIAQQVIVGAMLGFLFQVFYQVFVLGGQMIAMQMGLGFASMTDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++ +L + L +++F+ NGHL +I ++V +F LP+ + ++ ++F+ + +G+ + Sbjct: 121 ISVVMLGQFYLTLIMMIFVALNGHLIMIEIVVRSFEVLPVSLQAIDRDSFMKVALSGTWM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F +++ALP +T LL +N+A G+++R APQL+I +GFP T+ +G+ + + Sbjct: 181 FSAAMLMALPAVTALLVVNMAFGIMSRAAPQLNILAVGFPFTMVLGLFINWVNLGGFLDQ 240 Query: 240 CEHLFSEIFNLLADII 255 + + + + +++ Sbjct: 241 YMRISVFVLDYIENLL 256 >UniRef50_C8WBS9 Flagellar biosynthetic protein fliR n=3 Tax=Zymomonas mobilis RepID=C8WBS9_ZYMMN Length = 265 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 141/256 (55%), Gaps = 2/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITF--AIAPSL 58 M+ + ++L ++ LLR A AP+L + P V++ LA+ + + L Sbjct: 1 MIPAHLAEIENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMHAHL 60 Query: 59 PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 D + SF L+L V +I+ GIA+GF +Q +AA E+IG MGL FA+ +DP + Sbjct: 61 ILPDSGLVSFTGLFLVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVN 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 N VL +I +L FL +GHL LI ++V+++ T+P+GG LN+ FL LT+ Sbjct: 121 GSNSNVLTQIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQ 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F G+++ALP+ ++ + + +G L+R AP L++F +G P+ L +GI L+A +P I+ Sbjct: 181 LFSIGMLIALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISE 240 Query: 239 FCEHLFSEIFNLLADI 254 ++ + Sbjct: 241 GVIDAIRSGLDVADKL 256 >UniRef50_C1A548 Flagellar biosynthetic protein FliR n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A548_GEMAT Length = 295 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 106/227 (46%) Query: 14 NLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL 73 LR+ L+ AP S +SVP +++ + ++ + P+ A Sbjct: 19 TALVLTALRIGGLLLIAPAWSAKSVPMKLRTAMLVLFAVLLLPTALATTDRATLAITPAT 78 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + + IG A GF A AGE++ +GLS A DP ++ + M ++A Sbjct: 79 FLAETAIGFAFGFAAALVIAGAEFAGELMTTTIGLSGAAIFDPVNNTQGAIFGSFMQLMA 138 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 L L L GH+ +I + +F LP+G FLALTKAG IF GL A P+I Sbjct: 139 LTLLLITGGHIVMIEAIAKSFSVLPLGAPIDMQAGFLALTKAGGTIFATGLQFAAPVIAA 198 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +L N+AL +L R APQL I + FPL + +G+ A + LI Sbjct: 199 ILVTNIALAILGRAAPQLQIMSLAFPLQIGIGLLTFAGSVGLIVHAL 245 >UniRef50_C6HWM1 Flagellar biosynthesis protein FliR n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWM1_9BACT Length = 269 Score = 144 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 2/247 (0%) Query: 14 NLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFAL 71 L+ L R ++ P + R+VP +VK +A+ ++ + P + N L Sbjct: 17 ELFVLILARTSGVLIAMPAFNSRAVPTKVKALVAVALSALLFPVVGGRVNFHETGYDALL 76 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + + + ++G+++GF FAAV AG++ G+Q G ++P +P+L Sbjct: 77 FSILTEFVVGVSMGFAAYLVFAAVALAGQLAGVQAGFGIVDVINPLGVAEVPLLGNFQTQ 136 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 +A L+FL N ++ L ++ + +GG + + F + + GL+LA P I Sbjct: 137 IAFLIFLATNAQYAMLWALARSYDVVGVGGASFSGSYFAGIAHLFGRMMSLGLVLASPFI 196 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + LNL LG L++M PQ+++ +G P+ + G+ L +P + I L Sbjct: 197 VGGVILNLVLGFLSKMMPQMNLISLGLPVMVLGGLVLTILGLPFLGTVLGEAMGRISPTL 256 Query: 252 ADIISEL 258 D++ + Sbjct: 257 DDLLRVM 263 >UniRef50_UPI0001C312BD flagellar biosynthetic protein FliR n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312BD Length = 266 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 3 QVTSEQWLSWLNL-----YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS 57 Q T+ Q L+ L + +F L RV L AP+ + R VP R + +A+ + P Sbjct: 5 QTTANQLLAALGVRNVVGFFLVLARVSPLFLVAPMFNSRQVPARARTIVALAFALGLYPL 64 Query: 58 -LPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 + +P +F + L V+++L+G+A + FAAV AG ++ +G +F +DP Sbjct: 65 AVAGQTLPTEAFAIVGLIVKEMLVGLAFALCVSVMFAAVDAAGTLLDFMVGFAFGGSLDP 124 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 + VLAR+ ++A+ +F+ NG WLI + TF +P+ P ++ + Sbjct: 125 ITGNQSAVLARVYSLVAVAIFIAINGDAWLIQGMSRTFDIVPLSASPDFASISQGVVAVF 184 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 + IF + L +A P++ + ++A GL++R+ PQ+++F +GFP+ + VG+ ++AA +P + Sbjct: 185 TTIFASALAVAAPVLIACVLTDVAFGLVSRVVPQMNVFAVGFPVKVIVGLVVVAASLPFV 244 Query: 237 A 237 Sbjct: 245 G 245 >UniRef50_A4YB60 Flagellar biosynthetic protein fliR n=18 Tax=Gammaproteobacteria RepID=A4YB60_SHEPC Length = 259 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +TS + + ++WP R++ P+L VP V++ LA+ I +AP LP Sbjct: 1 MLSLTSTEISMLIGGFWWPFCRIMGAFMIMPLLGNAYVPVMVRIFLALSIAALLAPMLPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S +L+LA++Q+LIG L + + G I+ +QMGL+ A DPA+ Sbjct: 61 VPPVDAISLASLFLAIEQLLIGFMLALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + P+++ + L+FL NGHL I+++VD+F PIG + L + + Sbjct: 121 DSSPIISEWFQIFGTLIFLALNGHLVAINIIVDSFRLWPIGHGIFELP-LMGLVSRLAWL 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F LMLA+P + +L +N+ G+L+R AP L+IF +GFP+T+ +G+ + + I Sbjct: 180 FAASLMLAIPAVLAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSR 239 Query: 240 CEHLFSEIFNLLADIISEL 258 L + + I + Sbjct: 240 YSDLCLDALTAMYQFIGGI 258 >UniRef50_A9KNE1 Flagellar biosynthetic protein fliR n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE1_CLOPH Length = 255 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 130/251 (51%), Gaps = 1/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + L +F L+R+ A I T P S ++VP++VK+GL++ + + ++P +++ Sbjct: 5 VEQLVFFFVILVRISAFIYTGPFFSLKNVPQKVKIGLSLTLAIILNQTIPYSELVYEGVI 64 Query: 70 AL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + V + L G +GF F + AG+++ +++G S DP S+ + + A Sbjct: 65 GFAIVIVGEALAGAIMGFFSNICFQILSLAGQLMDMEIGFSMVNEFDPISNAQVTITANF 124 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 +L L N H ++I LVD++ +P+GG LN + + + F+ + L Sbjct: 125 YHYAVMLFLLITNMHHYIIKALVDSYQVIPVGGAKLNPLIYTVMVQFVVDFFVIAFRIIL 184 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+ +L +N+ L +L ++APQ+++FVIG L + +G ++ + +I + +F+E+ Sbjct: 185 PIFASMLIVNVVLAILAKVAPQMNMFVIGLQLKVLIGFIVLLFMTLMIPSVADFIFTEMM 244 Query: 249 NLLADIISELP 259 +L IS L Sbjct: 245 GMLKSAISFLK 255 >UniRef50_C4G685 Flagellar biosynthetic protein fliR n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G685_ABIDE Length = 260 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 124/251 (49%), Gaps = 1/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + L + + + RV A + T+P + S+P+++K+ ++ + + +LP +V Sbjct: 9 VENLEYFLFIVTRVSAFVFTSPFFNFGSIPRQLKVAFTLIFSALLYLTLPYTEVRYPGII 68 Query: 70 A-LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 ++ + + L G LG+ + G +I +++G + T DP ++ V + Sbjct: 69 GFTFMVMSEALAGGMLGYFTNIVMTILNFTGRLIDMEIGFAMVTMFDPVFKVDTSVSGNL 128 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +LL L N H + ++ VD + +PIG +N+N + FL + L L Sbjct: 129 YNYFTILLLLIGNFHHYFLAAFVDAYKVIPIGRAMVNANTVNVIADFLGNYFLIAMRLML 188 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+ +L +N LG++ ++APQ+++FV+G L L VG+++M + ++ ++L E+ Sbjct: 189 PIYATMLLVNAVLGVMAKVAPQMNMFVVGIQLKLLVGLAVMVLMTSMLPGVADYLTKEMQ 248 Query: 249 NLLADIISELP 259 ++ + L Sbjct: 249 DVFLKAVEALK 259 >UniRef50_B8FK33 Flagellar biosynthetic protein fliR n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK33_DESAA Length = 260 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFSFFA 70 + ++ L+RV ++ P+ +P VK GL++++T + P + N P Sbjct: 11 MAVFALILIRVSVILFMFPVFGSNLIPLPVKAGLSLLLTLYLTPIVQVNPQSFPDTVLEG 70 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + + + ++G+ L + F FAAV+ G+++G QMG + A DP S M +L+ Sbjct: 71 GVMILCEAVMGLTLSLIVSFFFAAVQVGGQLVGYQMGFAIANVFDPVSGGQMSILSNFAF 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + L+LF+ NGH I + +F +P+G + ++ K + +F L +A P Sbjct: 131 WVTLVLFIVLNGHHIFIRAVAHSFEIVPVGHLYAGRSIMPSMIKLSTDMFTLSLQIAGPA 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 I LL +N A G++ ++ PQ++I ++ FP+ + +G+ + LI + E + Sbjct: 191 IVALLLVNAAFGIVAKVVPQINILIVAFPINVGMGLFFFGVSLQLILASMKAHLDEWERV 250 Query: 251 LADII 255 L I+ Sbjct: 251 LHSIM 255 >UniRef50_A8F4V7 Flagellar biosynthetic protein fliR n=1 Tax=Thermotoga lettingae TMO RepID=A8F4V7_THELT Length = 258 Score = 142 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFSFFAL 71 + + R + + AP ++ VP +VK+ L + +++ + PS+ + + Sbjct: 11 FLAWVLVVTRNAGMFTIAPFFADWFVPLQVKVLLVVFLSWTVLPSINEVIPLHTPVAQIV 70 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + +IG+ +GF A+ AGE+ G QMG + ++ DP +P+ ++ + Sbjct: 71 LSMLSNYVIGLTIGFLALLPVIALSIAGEVFGTQMGFALSSVFDPQR-EEVPIHGELLYV 129 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L +F+ GHL + +VD+ +++P+ ++ N LT+ S +F + + +P+I Sbjct: 130 FGLYIFVALKGHLLIYQAVVDSLNSIPVSKTLIDFNFVSVLTEKISEMFSIAMKIGMPMI 189 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + +++LG+++R+ PQ+++F++G PL + VG LM ++P+ A + + N L Sbjct: 190 GFMFVTSISLGIISRLVPQMNVFMVGMPLKILVGFILMVGMIPVWADVFSQIAARTINFL 249 Query: 252 ADIISE 257 + Sbjct: 250 EFFVRS 255 >UniRef50_C0C1N5 Flagellar biosynthetic protein fliR n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1N5_9CLOT Length = 257 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 1/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFAL 71 ++ L+R+ + PIL +++P K GLA+++ + P PA + + Sbjct: 9 FLVFTLVLMRMSGFVFLNPILGRKNIPAVFKTGLALVLALVVYPQAEPAGEEVTSAVVYA 68 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L +++ +G LGF MQ V AG +I QMGLS AT D + + + I+ + Sbjct: 69 VLLLKEFALGYLLGFVMQLFDMVVSFAGSVIDFQMGLSMATVYDAQNGTQIALTGNILQI 128 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 LLLF +GHL L+ +L+ + +P L + + A+ + + + + LA P+I Sbjct: 129 YYLLLFFAVDGHLALLKILMTSQDIVPYAALKLGTGSAQAVLQIFTECVVLAVKLAFPII 188 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + +A GLL R+ PQ+++FV+ L + +G+++M L+ + + + S++ L Sbjct: 189 AFEFLVEVATGLLMRIIPQINLFVMSIQLRVIIGLAMMVFLISPAGDYLKGIISQMMQGL 248 Query: 252 ADIISEL 258 D++ + Sbjct: 249 QDVLRTV 255 >UniRef50_A6U663 Flagellar biosynthetic protein fliR n=7 Tax=Rhizobiales RepID=A6U663_SINMW Length = 250 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA-- 70 + F R+ I P S VP +++L +A+ I+ AI P + + P + Sbjct: 9 VLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYPQVTGKGHD 68 Query: 71 -LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L+L + +G +G ++ ++ AG + + MG S D L ++ Sbjct: 69 YLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTAENQLTSLI 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 L++ + H + + ++ +PIG + LT + F+ L LA P Sbjct: 129 SFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFMIMLRLASP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L+ L N+A+G++N++APQ+ ++ I P + G+ L+ + + F+ + Sbjct: 189 LVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFADGFAPVMQ 248 >UniRef50_A5V2S0 Flagellar biosynthetic protein fliR n=3 Tax=Sphingomonadaceae RepID=A5V2S0_SPHWW Length = 260 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 2/250 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 M+ + L L+ ++R A AP+ VP +++ +A+ I + P Sbjct: 1 MIPQGLAGIETQLWLWMIAMIRPGAAFIAAPVFGAPQVPMQLRAVVALAIGIPALANTPF 60 Query: 60 -ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + + L +IL G+ALGF +Q F+A AGE+IG MGL FA +DPA+ Sbjct: 61 VMPVGGIVTIEGFLLVAGEILAGLALGFAVQIGFSAALVAGEVIGNAMGLGFAGMMDPAT 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 P +++ + +LA LFL GHL L +++V+++ LP G L + + L G Sbjct: 121 GSPSPAVSQYLSLLATFLFLATGGHLQLAAIIVESYRALPPGEAWLGARSIQGLALFGGD 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F GL +ALP+ L+ + L + +L R APQ++IF +G P TL G+ L+A P++A Sbjct: 181 LFAAGLAIALPVGFALILVQLVMAMLARSAPQMNIFSVGLPATLMAGLVLLAIAAPVMAD 240 Query: 239 FCEHLFSEIF 248 Sbjct: 241 GITAAIQRGL 250 >UniRef50_Q3A5E4 Flagellar biosynthetic protein fliR n=3 Tax=Deltaproteobacteria RepID=Q3A5E4_PELCD Length = 258 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67 ++ + + RV +L S PI P R+++ L++ I + P LP P+ Sbjct: 8 IASIQGFLVCAARVTSLFSALPIFGSAQTPVRIRIALSVTIALVVYPLLPELLPATPLTP 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L Q+ ++G+ +GF + F AV G IIG QMG + A DP S + ++++ Sbjct: 68 IGLGILIAQETMVGLMIGFIARLVFIAVEFGGSIIGYQMGFAAANVFDPQSQHQVSLISQ 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++ A+LLFL F+ H + L+ D++ LP G L A L L++ +F + + Sbjct: 128 FQNVFAILLFLAFDVHHLFLRLIADSYRLLPAGDAKLGGEAVLFLSRLTGEMFTLAVKFS 187 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ +LL L LG+++RM QL+ F++ FP+ + V + M L+A + F + Sbjct: 188 APVLIVLLLSGLVLGIMSRMFQQLNAFMLSFPINIGVSFLSIGLTMQLLAVMLQREFGAL 247 Query: 248 FNLLADIISEL 258 ++ L Sbjct: 248 QQRFYALLDLL 258 >UniRef50_C4ZAM9 Flagellar biosynthetic protein fliR n=2 Tax=Clostridiales RepID=C4ZAM9_EUBR3 Length = 259 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 122/251 (48%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 ++ + L+R+ + + AP + +VP RVK GL+ + + + + S Sbjct: 8 IANFEYFLLILVRIASFVYIAPFFGDNAVPARVKTGLSAFVALFMYNIIERPQLSYVSAV 67 Query: 70 AL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L V++ + G+ +GF + V AG +I + +GLS AT +P+ + V Sbjct: 68 GFAVLVVKEGITGLLIGFAANICNSIVIFAGNLIDMDIGLSMATEFNPSMNSETTVTGNF 127 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL-NSNAFLALTKAGSLIFLNGLMLA 187 + L+L L + H +LI + D+F +P+GG N +TK +F+ G + Sbjct: 128 YYYVVLVLLLVSDMHTYLIRAVCDSFSVVPLGGAQFQFDNMLSTMTKYMGDMFVIGFRIF 187 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP+ ++ +N LG++ ++APQ+++F +G L + G ++ ++ LI + +EI Sbjct: 188 LPVFACMMIMNCILGIMAKVAPQMNMFSVGIQLKIIAGFIVLFLIVYLIPNIANFIITEI 247 Query: 248 FNLLADIISEL 258 ++ II + Sbjct: 248 KTMVVSIIDGM 258 >UniRef50_A5P6J2 Flagellar biosynthetic protein fliR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J2_9SPHN Length = 261 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 2/241 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP--VFSFFALWLA 74 + + R+ A + AP SVP V++ + + +A +P P + S L Sbjct: 19 VFLMTRIGAALLAAPFFGATSVPMAVRVSITGALAIFVATWMPEVQTPEAILSLEGLLAI 78 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 +++IG+ALGF +Q AFAA A E+IG MG+S A D + ++ Sbjct: 79 AGEVVIGLALGFVLQLAFAAPTIAAELIGGGMGMSMAVSQDAMGGGTTTSFGQYFVIVLT 138 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 L+FL+ HL ++L+ +++ P G L + F A+ S +F + +ALP+ +L Sbjct: 139 LIFLSTGAHLHWVALVAESYSAFPPGQTWLGAERFAAIAGFASFMFETAIRIALPVTLIL 198 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254 L + + G+L+R AP L++F +G P + G++ + PLI L ++ + + Sbjct: 199 LLVQVITGILSRSAPSLNLFALGLPAGVLAGMAALIISAPLIYDQFAGLVADALDQTESV 258 Query: 255 I 255 I Sbjct: 259 I 259 >UniRef50_Q17YT4 Flagellar biosynthetic protein fliR n=18 Tax=Helicobacteraceae RepID=Q17YT4_HELAH Length = 255 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 119/254 (46%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML E + +F LRV ++S P VP V+ L++ ++ P+L Sbjct: 1 MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ + + ++ +G+ +Q FA++ A + I MGL+ A+ DP S Sbjct: 61 SNATYTPESFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++ + + +LA+L+ L + H +I + + +P+G + KA S +F Sbjct: 121 QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G +A P++ L+L ++ G++ + PQ ++ IGFP+ + +G + ++ I Sbjct: 181 IIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF 240 Query: 241 EHLFSEIFNLLADI 254 + S F+ ++ I Sbjct: 241 KDEISLAFSTISKI 254 >UniRef50_A6F9S0 Flagellar biosynthetic protein fliR n=1 Tax=Moritella sp. PE36 RepID=A6F9S0_9GAMM Length = 260 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 142/259 (54%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +S + + + +WP R+++ + PI + + V++ A+ + I+P +P Sbjct: 1 MLNFSSIELMLIIGKIWWPFFRIISALWLLPIFGDTRITPSVRILFALTLAILISPVVPV 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 D + FS ++ LA++QIL G+ G ++ F ++ GEI+ +QMGLS A DP+S Sbjct: 61 VDNINPFSLGSIILALEQILFGLFFGLSLTMLFTMMKLIGEILSMQMGLSMAVMNDPSSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + V + ++ + A LLFL+FNGHL ++ +LV++F T PIG N + K S + Sbjct: 121 GSSHVNSHLLTIFATLLFLSFNGHLIVLDILVESFVTWPIGSSIYLLNI-DIILKLVSWM 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F+ LMLA+P I +L +N+ G++NR AP L+++ +GFP+ + +GI + + +I Sbjct: 180 FMAALMLAMPAIVAMLLVNITFGVMNRSAPSLNVYSLGFPMGMLLGIICLGLVFRVIPNR 239 Query: 240 CEHLFSEIFNLLADIISEL 258 I + I L Sbjct: 240 FFDFTVFILEQMRFISGGL 258 >UniRef50_C7R0I3 Flagellar biosynthetic protein fliR n=2 Tax=Micrococcineae RepID=C7R0I3_JONDD Length = 253 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 121/244 (49%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + +R +A AP S RS P VK+ LA+ + A+AP++ + Sbjct: 10 IETVMLVSVRFIAFFVIAPPFSARSFPATVKMMLALGMALAVAPTITPAVPAQNFGTYML 69 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 Q++IG +LGF + FAAV +AG +I + G + A DP + +N + R+ M Sbjct: 70 ALGLQVVIGASLGFIVYLVFAAVESAGGMIDMTGGFAMAQGFDPLNQVNGAQMYRLFQMT 129 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 AL L NGH ++ + +F P+ G ++ + +FL + +A PLI Sbjct: 130 ALALLFASNGHHLIVGGFIRSFEFAPLAGGINMDRMGQSVATGLTDLFLAAIQIAGPLIV 189 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 +L+ ++ +GLL+R+AP L++FV+ FPL + + I+L++ + E L + L Sbjct: 190 VLVLADVGMGLLSRVAPALNVFVLSFPLKIFLTITLVSVVYLTFPRIIEALTNTSIERLW 249 Query: 253 DIIS 256 ++I Sbjct: 250 EVIR 253 >UniRef50_C4Z5H7 Flagellar biosynthetic protein fliR n=3 Tax=Bacteria RepID=C4Z5H7_EUBE2 Length = 257 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 1/250 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L+ L+ L+R+ + + AP + +VP RVK+G + +T + P V Sbjct: 7 LAQFELFVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVEYNGMI 66 Query: 70 -ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + V++I++GI LG F + AG+II + +G+S A DP + + + ++ Sbjct: 67 EYAIIVVEEIIVGILLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNF 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +LL + H +L+S +V+T+ +PIGG + + + S F+ G +AL Sbjct: 127 YYYMMMLLLIISGMHQYLVSAIVETYRVIPIGGVKFGAGIYTGIIGFVSDFFVIGFRIAL 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+ +L LN L +L +++PQ+++FV+G L + VGI ++ + ++ + EI Sbjct: 187 PVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISMLPSVSNFILDEIE 246 Query: 249 NLLADIISEL 258 + A ++ + Sbjct: 247 KMFAILVRGM 256 >UniRef50_Q4JMS6 Flagellar biosynthetic protein fliR n=1 Tax=uncultured bacterium BAC17H8 RepID=Q4JMS6_9BACT Length = 270 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 1/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-SFFAL 71 L YF LR+ A + +API R +P +V++ +A + AI +P + S + Sbjct: 21 LLQYFLASLRIGAFLLSAPIFGARWLPLKVRIIMAFTLAAAIVGDVPDVGTDLLTSSVGV 80 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + +I IG+ G T+ FAAV AGE I GL +A VDPA+ PV+++I+ + Sbjct: 81 SMMFIEIAIGLTAGLTLTIWFAAVLLAGEKIASSAGLGYAAQVDPATGGQTPVVSQILYL 140 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L++FL+ +GHL I +++++ LP+G + A +FL ++ LP+ Sbjct: 141 FLLVIFLSIDGHLLAIGTMLESYRILPVGASVAPEVLIASGITAAGSMFLAATIIMLPIT 200 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 T+LL +N+A+G++ R APQL++F GFP++L L+ + L L Sbjct: 201 TVLLMINVAIGIITRSAPQLNLFSFGFPISLLAVFLLLFFSAGAFGTSSQSLIDSALTSL 260 Query: 252 ADIISEL 258 D+I L Sbjct: 261 QDLIGGL 267 >UniRef50_A6W8L5 Flagellar biosynthetic protein fliR n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L5_KINRD Length = 274 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 113/239 (47%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILI 80 +R A + AP + ++V +VK L++ + A+A L + V + VQQ ++ Sbjct: 20 VRSAAFLMLAPPFANKAVNGQVKALLSVGLGLAVAERLRDSVPAVEPGALITAVVQQAVV 79 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G +G + FAAV+ AG+++ L G A+ DP V ++ + L + Sbjct: 80 GAVMGAFVALVFAAVQAAGDMLDLFGGFQMASAYDPLMQSQTAVFGKLYTWTSTALLVVS 139 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLA 200 GHL ++ + ++ LP+ T+ + + ++ + +A PLI +L ++ Sbjct: 140 GGHLLILQGFLRSYDVLPLDAGLDTGTVARVFTEGVAQLVISAVQIAAPLIAVLFLTDIG 199 Query: 201 LGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELP 259 LGLL+R+AP L++F + FP+ + + ++L ++ + + + +++ P Sbjct: 200 LGLLSRVAPALNVFAMSFPVKILITLTLAGFAFSMLPGVVDDMAGTARETVVRLVTPGP 258 >UniRef50_D0WZK5 Flagellar biosynthetic protein fliR n=1 Tax=Vibrio alginolyticus 40B RepID=D0WZK5_VIBAL Length = 254 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 2/237 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-NDVPVFSFFALWLAVQQI 78 RV A+ + P + +P V+ LA+ I P +P V +FS +L+LA +Q Sbjct: 15 FFRVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLFLAFEQA 74 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 + G+ G + F G++I LQMGL A DP + L++ +L RI + + LLFL Sbjct: 75 IWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLLFL 134 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 GHL +I +++ +F P+G + S + + +F + L LALP I +L N Sbjct: 135 ALEGHLLVIDIVIQSFVVWPVGSG-ITSLSLQGVVNIFGWMFASSLALALPAIVSMLLAN 193 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADII 255 ++ G++NR AP L+++ +GFP+T+ +G+ + + + L + L++ + Sbjct: 194 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTALVHDTIRHLSNFM 250 >UniRef50_C6WJP4 Type III secretion system inner membrane R protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP4_ACTMD Length = 256 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 2/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 L R A + P + +++P VK LA+ + + P L A VP ++L Sbjct: 10 LVALLLAATRSAAWLMVCPPFNGKAIPMTVKGMLAVGLALPVVPRLSAGSVPSLDTWSLV 69 Query: 73 LAVQQ-ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS-HLNMPVLARIMD 130 +A + +++G LGF FA V+ AG+++ + G S A DP S N VL R Sbjct: 70 IAAGEQVVVGAGLGFLTAVIFAGVQAAGDLLDVFGGFSLAFAFDPMSFSGNNAVLGRFYG 129 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +LA L H +I ++ +P+ G LT + L+ +A PL Sbjct: 130 LLATTLLFVTGSHQVIIRGFTLSYDAIPLDGGLSLGRLGTLLTTGLGQLLLSAAQIAGPL 189 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 I +L ++ LGLLNR+AP L+ F IGFP + + + L+ MP++ E++ + Sbjct: 190 IVVLFCADVGLGLLNRIAPALNPFQIGFPAKIGLTLVLVGLTMPMLPMSVENIAKHAASA 249 Query: 251 LADIISE 257 + + I Sbjct: 250 VMEAIGR 256 >UniRef50_B0P9X4 Flagellar biosynthetic protein fliR n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X4_9FIRM Length = 254 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 126/249 (50%), Gaps = 2/249 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + ++ L Y +R+ A+I T P+LS R+VP V+ GL ++TF IAP L P+ Sbjct: 3 DSVMAGLPAYMLVFVRMAAMIGTNPLLSRRNVPAAVRAGLTALLTFLIAPGL--TVAPMD 60 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + +++ L+G A G+ Q + + AG+++ +Q GLS A DP +++ + V Sbjct: 61 QMTLVLAMLKEFLVGFACGYVFQIFYYMLFFAGDVMDMQFGLSMAKVFDPGTNMQVSVSG 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 +++L L N HL L+ + +F +P G P + + + F L L Sbjct: 121 NFLNILFSLFIFATNSHLLLVRIFATSFQIVPAGFTPFSPHVSGYIADLFIEAFSLALRL 180 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 ALP I + L ++LG+L ++ PQ+ +FVI F L + + + ++ ++ F ++ + Sbjct: 181 ALPFIAVEFVLEVSLGILMKLIPQIHVFVINFQLKVFLSLVMLLTFAAPLSSFLDNYMNY 240 Query: 247 IFNLLADII 255 + + ++ Sbjct: 241 MLECIQKVL 249 >UniRef50_Q7NUT8 Type III secretion system EscT protein n=5 Tax=Proteobacteria RepID=Q7NUT8_CHRVO Length = 257 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 111/253 (43%), Gaps = 3/253 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVP-KRVKLGLAMMITFAIAPSLPANDVPV-F 66 W WL + +LR L + P+ S ++ ++ L +MI + P P +P Sbjct: 4 WTQWLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPVYPQWQLPAAG 63 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 ++ + LA +I IG+ +GF F + AG +I G S A+ ++P + Sbjct: 64 AWGYVLLAAGEICIGLMIGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPLLGQQSSLFG 123 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP-LNSNAFLALTKAGSLIFLNGLM 185 + + +LFL G L+ + ++ TLP G + A + L++ L Sbjct: 124 LLFTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYELCLR 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 ++P I ++L +++ALGL+NR A QL++F + P+ + ++ + + Sbjct: 184 FSMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLMLIVSLSFAFNGLLDYSA 243 Query: 246 EIFNLLADIISEL 258 L ++ +L Sbjct: 244 HFTKLTDALLEQL 256 >UniRef50_C0GJG4 Flagellar biosynthetic protein fliR n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJG4_9FIRM Length = 253 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 127/247 (51%), Gaps = 2/247 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAI--APSLPANDVPVFS 67 L ++ F +R+ ALI+ P + R +P K+G A + + I A S ++P Sbjct: 3 LEQWSVLFLIFVRLSALIAVLPFFTWRGIPALPKIGFAGVFAYLIFLASSPQEFEIPEHF 62 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 ++ + ++L G+ALGF + FAA R AG+++ +Q GL A+ DP + + + Sbjct: 63 YYYVLAVGSEVLFGLALGFLVLLIFAAARIAGQMVDVQAGLMMASVFDPQFGSQVTLFGQ 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + AL+ +LT NGH L + + + GG + + + +F+ LA Sbjct: 123 FYYLFALVFYLTVNGHHMLFMAIARSIELVTPGGVVFSPQLIPNVMQFIFQMFIIAFQLA 182 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P++ +L+ +LALGLL++ PQL +F++G PL + V + ++ + P +A E +F+ + Sbjct: 183 VPVVAVLIFSDLALGLLSKTVPQLHVFMVGMPLKVGVALFIIYLIFPYLAQVLETVFARM 242 Query: 248 FNLLADI 254 + + Sbjct: 243 QEDIIHL 249 >UniRef50_C6XLQ1 Flagellar biosynthetic protein fliR n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XLQ1_HIRBI Length = 247 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 2/235 (0%) Query: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFALWLAV 75 R+ +++ AP E SVP + +L A++ T A+ P+L VP + L + Sbjct: 9 LLFCRIGSVLMLAPGWGESSVPAQFRLSAALLATMALVPNLIDQMPPVPELVSQSALLII 68 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 +ILIGI +G + +A++ G+IIG+ GL+ AT DP + ++ M M A++ Sbjct: 69 SEILIGIMMGAGARILMSALQVGGQIIGISSGLAMATQFDPTIGSSSAIIGVFMSMTAIV 128 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L + H ++ VD++ G +A A S F GL +A P++ + L Sbjct: 129 LIMIAGIHRDMLQAAVDSYQLFKPGEPLPIGDAAQWELGAMSSAFKLGLQIAAPILVVAL 188 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 NL++GL+ R+ PQ+ +F I P+ + +G+S+M ++ L Sbjct: 189 VFNLSIGLVARLIPQVQVFFIAMPIQVMLGLSIMTFILGGGLLVWLDALGRYARL 243 >UniRef50_B1K3A1 Flagellar biosynthetic protein fliR n=3 Tax=Betaproteobacteria RepID=B1K3A1_BURCC Length = 265 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 1/254 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ Q L N FWP R+ A ++ +PIL + VP R++L +A+ + AI P +P Sbjct: 1 MEIFLAQLLPLANTIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPTM 60 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + + +Q+LIG LGF A++ G I Q+GLS A DP + Sbjct: 61 PVIDLLQLEGVAAMAEQVLIGGLLGFVFHLVLCALQIFGTIASSQLGLSMAQINDPMNGQ 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 VL +M ++ +LLF +GHL L S++ +F P+G + +A L A IF Sbjct: 121 MADVLTSVMYVVFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + LALP++ L + + LGLLNR+AP L+IF +GF +T G+ L+ L+P + Sbjct: 181 SAAVALALPVMFATLVVQVGLGLLNRVAPALNIFALGFSITTMFGLLLLTLLLPSLPDHY 240 Query: 241 EHLFSEIFNLLADI 254 + + L + Sbjct: 241 GRMVEHVLELYDRL 254 >UniRef50_B0RSX9 Flagellar biosynthetic protein fliR n=13 Tax=Xanthomonadaceae RepID=B0RSX9_XANCB Length = 263 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 + + ++ + + W +LR AL++ P++ R+VP RV++ L + A+AP LP Sbjct: 7 MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPILPPV 66 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + F+ A+ +++ +G ++GF ++ F A AGE++ GLSFA DP + Sbjct: 67 PEWDGFNATAVLSIARELAVGASMGFMLRLIFEAGALAGELVSQATGLSFAQMSDPLRGV 126 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT-KAGSLI 179 V+A+ + LLF NGHL +I+LLVD++ LPIG ++ AF + + Sbjct: 127 TSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTAVPDAAAFAEVAPTLLLQV 186 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 GL LALP++ +L +NLA G L + AP L+ +G PLT+ +G+ L+++ AP Sbjct: 187 LRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP 246 Query: 240 CEHLFSEIFN 249 + LF F+ Sbjct: 247 VQRLFDSAFD 256 >UniRef50_Q0EZ56 Flagellar biosynthetic protein fliR n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ56_9PROT Length = 260 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 136/251 (54%), Gaps = 3/251 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFS 67 + + + +LRV ALI PIL + VP ++K GL +++T I P + +P+ Sbjct: 8 IEQIIIGLLVMLRVSALIMMLPILGHQLVPAQIKRGLIVLLTILIFPLVADKVAAIPLKP 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + +A+ +IL+ A+ Q FAA++ AG++I QMG+S A DP +H V+++ Sbjct: 68 VAFVIVAIHEILVAAAIALFAQLIFAAIQLAGQLISFQMGMSVANVFDPMTHSQQSVVSQ 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + LA+LL+++ H I+ L+++F PI + + A LT A + +F+ L +A Sbjct: 128 LAVTLAMLLWISVGAHHMFITALIESFTLFPI-HQAIYFPALSTLTDAAATMFVLALKIA 186 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PL+ L+ + +ALGLL+R PQ+ +F + FPLT+ +G+ A MP FS + Sbjct: 187 APLMVLMTLVYVALGLLSRAVPQIQVFFVSFPLTVGLGLLTFALGMPAFVYLVSDAFSTL 246 Query: 248 FNLLADIISEL 258 N + + + Sbjct: 247 PNQIPLFLRHM 257 >UniRef50_Q2W9Q3 Flagellar biosynthetic protein fliR n=3 Tax=Magnetospirillum RepID=Q2W9Q3_MAGSA Length = 254 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 2/235 (0%) Query: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFALWL 73 +F R+ A + P L V R++L LA+ + F + P + A VP L Sbjct: 13 FFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPAVPRSVGGMLLA 72 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + ++G+ LG + F + + AG +IG Q GL+ A DP + +L + + Sbjct: 73 VFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSFDPIAQQQSQLLTGFLANIG 132 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 L+ + H + + ++++ P G + L + F G A PL+ Sbjct: 133 LVAVFATDMHHLMFQAVFESYYLFPPGQPLQFGDYAETLGHLATDTFKVGTQFAAPLVVF 192 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 L LGLL+R+ PQL +F +G P+ + VG+ L MPL+ F Sbjct: 193 GLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWLFMVTMPLVISLFLRFFESGL 247 >UniRef50_C9A930 Flagellar biosynthetic protein fliR n=4 Tax=Enterococcus RepID=C9A930_ENTCA Length = 249 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 1/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + R+LA + PI S+++ P K+ + M +T P+ PA + F Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIP-ELSLFMLTV 62 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 ++++L G+A+G+ Q F V AG++I Q+G S A DP + + L Sbjct: 63 FVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTYYWL 122 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 + +F + H LI+ L+ +F +P+G + + K S + + + LA P+I Sbjct: 123 TIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAPMII 182 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 LL ++L LG+++R PQ++I ++ + + + L+P + + + L Sbjct: 183 ALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLSYLGKHLPDTVRYLQ 242 Query: 253 DIISE 257 + I Sbjct: 243 EFIES 247 >UniRef50_B4RGX9 Flagellar biosynthetic protein fliR n=3 Tax=Caulobacteraceae RepID=B4RGX9_PHEZH Length = 253 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 2/235 (0%) Query: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFALWLAV 75 R+ A+I P L E +P R++L A+ + + P L A +P + + Sbjct: 15 LVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGALAGEVI 74 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 +++LIG+ +G ++ ++ TAGEI+ L LSFA +P P L+ + ML ++ Sbjct: 75 RELLIGLMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFLGMLGIV 134 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L LT + H ++ LV ++ P G E +A + S F GL LA P++ L L Sbjct: 135 LILTTDLHHMFLAALVRSYAIFPFGREVPVGDAGQLAIQTTSRAFALGLQLAAPVVVLSL 194 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 +N+A+GL+ R+ P +F I PL + +G+S+ A + +I + E+ + Sbjct: 195 IVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWVDRYRELIGM 249 >UniRef50_C3XEY7 Flagellar biosynthetic protein fliR n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEY7_9HELI Length = 258 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 129/257 (50%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML + + + LLR +++ P + +P V+ LA ++ P + Sbjct: 1 MLDFLPYITNANVMAFLMLLLRFGGILAFFPFFDNQILPVSVRAALAFVLAVVFMPMVTH 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + +IL+G G +Q F+++ AG++ MGL+ A+ DP S Sbjct: 61 IISYPSLTAFMIGGLFEILLGFTCGLVLQIIFSSIVFAGDLASFSMGLTMASAYDPMSGT 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++++++ L++L+ L FN H L+ ++ T + P+GG L+ N TK+ + + Sbjct: 121 TKPIVSQVVVFLSILMALHFNFHYLLLDIIARTLNDTPLGGFMLSDNIVAYFTKSFANMI 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L G +A P+I +LL ++ G++ + PQ ++ VIGFP+ + V + ++A ++P I Sbjct: 181 LIGFSMAFPIIAVLLLTDIIFGMIMKTHPQFNLLVIGFPVKIGVALVILAIIVPSIMQHF 240 Query: 241 EHLFSEIFNLLADIISE 257 + SE +L I+S+ Sbjct: 241 RYDLSEGMKVLWKILSQ 257 >UniRef50_A4WT32 Flagellar biosynthetic protein fliR n=2 Tax=Rhodobacteraceae RepID=A4WT32_RHOS5 Length = 266 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 124/249 (49%), Gaps = 1/249 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-S 67 L L F+ LR+ A + +P R VP V++ +++T + S Sbjct: 12 LLGSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTLPVLGRADLPGPEALAS 71 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 A+ + +Q+I IG++ G + F+A AG+ I GL FA +DP++ PV+A+ Sbjct: 72 LSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVVAQ 131 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 I + +FL +GHL +L+ ++ +LP G A AG +FL GL + Sbjct: 132 IFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQIM 191 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P++ L+ +N+ +G++ R APQL++F GFP+T++ + L+ +P L ++ Sbjct: 192 MPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMSATLILLFLTVPGTMGAFSSLVADS 251 Query: 248 FNLLADIIS 256 LA ++ Sbjct: 252 LAALAQLLE 260 >UniRef50_C1TKH9 Flagellar biosynthesis pathway, component FliR n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKH9_9BACT Length = 260 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 3/249 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF---SFF 69 + LY +R L +I TAP+ S P L+ P L V Sbjct: 11 VPLYMLVSIRFLGIIFTAPVFLASSFPIPCLYFLSFFFALITVPQLGGGLPEVLFSGVLP 70 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L A++++L+G ++ F F A++ AG +IG +MGL+ + +DP S ++ ++ Sbjct: 71 FLLAALRELLVGASIAFLASAPFYALQIAGRMIGTRMGLAMVSVLDPISQSQDSIIGQLQ 130 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 ++ L FL +NGH+ L+ L+++F LP+G L ++ L L + +F+ A+P Sbjct: 131 ILIGLWFFLYWNGHILLVRALMESFRLLPLGEMGLAVSSDLGLAEWLGKLFVMAFKFAIP 190 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 LL ++ LG L R PQ+++F++G PL + +G+ L+ ++P+ Sbjct: 191 FYGALLLADIGLGFLARTVPQMNVFILGLPLKIGLGLFLLMVVLPMTVDIMHDQIEPYLR 250 Query: 250 LLADIISEL 258 ++ Sbjct: 251 AALGSLAVW 259 >UniRef50_A1SEN1 Flagellar biosynthetic protein fliR n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN1_NOCSJ Length = 253 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 2/242 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 L Y +R+++ ++ P S R+VP K+ L + + FA P +P+ + L Sbjct: 10 LVAYLLASVRIVSWLAVVPPFSGRAVPMMAKVVLGLGLAFAAVP--DGGSIPLSTVGLLL 67 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 Q+LIG+A+GF Q F A+ AG +I + G S A+ DP S V + ML Sbjct: 68 NVGTQVLIGLAMGFVTQLLFGAIAAAGSLIDVFGGFSLASGFDPLSMNANTVFGKFHQML 127 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A +L GHL +I L+ TFH LP+G P A L A + F + +ALP+I Sbjct: 128 ATVLLFASGGHLLVIGGLLRTFHFLPLGTSPEWQTAPDVLLTAFGMFFTTAVQIALPMIA 187 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 +L +L L LL ++APQL+ F + FP+ + + + L+ P++ + L ++ Sbjct: 188 VLFLSDLGLALLTKVAPQLNAFNVMFPVKVGMTLLLVGLWFPVLPQAVDRLVDLSTQAMS 247 Query: 253 DI 254 + Sbjct: 248 SL 249 >UniRef50_Q3V817 Flagellar biosynthetic protein n=1 Tax=Symbiobacterium thermophilum RepID=Q3V817_SYMTH Length = 259 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 112/235 (47%) Query: 24 LALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIA 83 + + + AP+ S R VP +V++ L+ ++ F + P++ L A+ ++++G+ Sbjct: 19 MGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLV 78 Query: 84 LGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGH 143 +GF + ++ AG ++ L+MG + A DP + VL + AL+ F+ +GH Sbjct: 79 IGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGH 138 Query: 144 LWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGL 203 WLI ++ +P GG + + L + + + + L LP + ++L +A + Sbjct: 139 HWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAV 198 Query: 204 LNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 LNR QL+IF IG VG+ L+ L+P LF F I+ + Sbjct: 199 LNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFEAGFREALRILELM 253 >UniRef50_A0NPF3 Flagellar biosynthetic protein fliR n=3 Tax=Rhodobacteraceae RepID=A0NPF3_9RHOB Length = 257 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 114/252 (45%), Gaps = 4/252 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS---L 58 + + + + ++ R+ ++ P L E ++P R +L +A+ +T + P Sbjct: 1 MTIQLDYLPNVATIFMLMFARLGTMVMLLPALGESTIPTRFRLTIALALTMVLYPVGSQY 60 Query: 59 PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 +V ++ + L ++ IG+ +G + + ++ AG I+ Q GL+FA D A+ Sbjct: 61 YPVEVTSNTYRMIALLFGEVAIGLGIGLCAKMITSVLQIAGMIMANQSGLAFALGTDFAN 120 Query: 119 -HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + + +L + L + H +I+ L D+F P G P + T+ + Sbjct: 121 QGQQGALFGNFLSILGITLVFVSDSHYLVIAALHDSFMIFPPGLAPPVGDFSQNATETVA 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 +F + ++ P + + L LGLLN++ PQ+ IF I P+ + +G+ ++ L+ + Sbjct: 181 HVFSIAVRMSAPFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGLFMLMVLITTLM 240 Query: 238 PFCEHLFSEIFN 249 F F E Sbjct: 241 MFYLDHFQEALG 252 >UniRef50_UPI00016C0EEE flagellar biosynthesis protein FliR n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EEE Length = 262 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 134/252 (53%), Gaps = 2/252 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS- 67 ++ +++ +R++A++S PI+ E VP V LA+++T + ++P + + Sbjct: 7 LYAYTDVWLLIFVRIVAVLSLFPIILETKVPATVVAMLAIILTMIVFFTIPQGTISYANT 66 Query: 68 -FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 L ++++L+G+ LGF + F + G++ Q GLS + F DPA +PVL Sbjct: 67 WLGYSILVIKEMLVGMVLGFGVLIFFQVLNFTGQLWSNQGGLSMSQFYDPALGAQIPVLG 126 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 R + + +F+ G+ + IS L+ TF +P+G + N + + + A ++ F G L Sbjct: 127 RFLTLGFSTIFVLSGGYHYFISALIKTFEYIPLGTQFFNPSISITILDAVAIFFELGFKL 186 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 A P++ +L +++ LG+L R PQ+++FVIG PL L + I L+ ++ I + + Sbjct: 187 ATPILGTILLIDVGLGILARTVPQMNMFVIGLPLKLLILIFLLITIVNYIPEYGNIIIDN 246 Query: 247 IFNLLADIISEL 258 + N D++ L Sbjct: 247 MKNTYFDLLEGL 258 >UniRef50_C0QA54 Flagellar biosynthetic protein fliR n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QA54_DESAH Length = 262 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 2/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS--LPANDVPVFSFFA 70 L+ L RV ++ PI P VK GLAM+I+ + L + +P + Sbjct: 12 FKLFLLVLARVSIVLFMLPIFGTTMFPTMVKAGLAMVISMLLYSVVQLDPDLLPETAMGM 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 V + +IG+ LG ++ F + + AGE+IG QMG S VDP S N+ ++ ++ Sbjct: 72 GIFLVSEAMIGLTLGLCVRLFFGSFQLAGEVIGFQMGFSMINVVDPQSGANVSLMEQLAY 131 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +ALL+FL NGH ++ LVD+F + G + GS +F+ + + P+ Sbjct: 132 WVALLVFLAMNGHHIMLLSLVDSFELVQPGSFVFQQIMVDKVIFLGSQMFILAIKIGAPV 191 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 I LL ++A GL + +PQ+++ ++ FPL + VG+ L + +I E L Sbjct: 192 IAALLFTSVAFGLTAKFSPQMNVMIVAFPLKIIVGLVLFGLSLEIIIIVARTYIIEFRAL 251 Query: 251 LADII 255 ++ Sbjct: 252 FLKLL 256 >UniRef50_Q8D3F3 Flagellar biosynthetic protein fliR n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3F3_WIGBR Length = 258 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 155/255 (60%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + L W+N W + RV L +AP+ +E+ +P+++K+ ++++ +F ++ LP Sbjct: 3 MIDFSINILLDWINQNIWAIARVNGLFISAPVFNEKVIPRKIKILISVLFSFLVSQELPL 62 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 N++ + S ++ + QI+IG +G +Q +F +++ +GE+IGLQMGLSFA F D S Sbjct: 63 NNISIISIEGFYVLIIQIIIGFFIGLILQLSFCSIKFSGELIGLQMGLSFAVFFDHISGP 122 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLI 179 N P+++R +++ +L+FL+F+ HL ++ +L ++F +PIG N F ++ +I Sbjct: 123 NSPIISRFFNLILILIFLSFDAHLTVLDILFNSFKLIPIGINFKFNDEIFFSIINFSGII 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F NGL L++P IT+LL+LN+ G+LNR PQ SIFVIGF LTL +G+ + ++ Sbjct: 183 FANGLFLSIPSITMLLSLNILFGILNRFTPQFSIFVIGFSLTLLIGLLSIYIILNNFQKL 242 Query: 240 CEHLFSEIFNLLADI 254 L F + + Sbjct: 243 STDLIFNTFKYIYNF 257 >UniRef50_Q3V7R2 Flagellar biosynthetic protein fliR n=1 Tax=Bdellovibrio bacteriovorus RepID=Q3V7R2_BDEBA Length = 259 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 134/255 (52%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP- 64 S + + L+ LLR+LA + ++ + V VK+ L+++++ + P + +V Sbjct: 5 SAMTEAQILLFALVLLRMLAYVISSAVFGSPLVNTPVKILLSLVLSMVLYPVVKVGNVDY 64 Query: 65 -VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 V S + LAV+++++G+ALGF + F V G+++ + +GLS A +P Sbjct: 65 LVISNEIIGLAVRELIVGLALGFLTRLFFFVVSMTGDLVSMSVGLSAAQLYNPMMGSQGG 124 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 V+ + +A L+FL NGH LIS + ++ +P+ LN F + G + F+ Sbjct: 125 VIEQFYSAMATLVFLAINGHHMLISAIAQSYELVPVSSLALNFGPFAEIAVFGQVAFVMA 184 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + + P++ +L +NLA+G+L R PQ+++ V P+T+ +G++++ +PL+ + Sbjct: 185 IKMCAPVLVAILIVNLAMGILGRAVPQINVLVTSMPVTIMLGMAVVFICLPLLIMEMNGV 244 Query: 244 FSEIFNLLADIISEL 258 + L D++ L Sbjct: 245 VEITASKLFDVMKHL 259 >UniRef50_Q28JK8 Flagellar biosynthetic protein FliR n=1 Tax=Jannaschia sp. CCS1 RepID=Q28JK8_JANSC Length = 256 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 2/237 (0%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 WL LRV A P L E+ +P RV+LG A+ T + P++ L Sbjct: 15 WLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVIPPL 74 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + + G+ +G +++ A++ AG I LS + A+ +P + I+ + Sbjct: 75 TAFFSEAIAGLIIGMALRYLVHALQVAGTIAAQSTSLS--QILGGATPDPLPAMGAILML 132 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L L + H+ L+ + ++ LP G P + S F + LA P + Sbjct: 133 GGLTLAVISGLHVHLVQTFLHSYDVLPFGNLPGPRDLAGWSVDQVSASFSLAVSLAAPFL 192 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 L N+ALG++N+ PQL + +G P G+ L+ P I P H F Sbjct: 193 VASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPVWLHAFEGAL 249 >UniRef50_B8HEJ0 Flagellar biosynthetic protein fliR n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ0_ARTCA Length = 252 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 121/244 (49%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 WL +R++A + AP + ++P RVK L + + A++ + VP+ + Sbjct: 8 PWLEAMLLASVRMIAFLVVAPPFAHHAIPARVKAMLGLGLGLAVSGRVADGYVPLGTAGF 67 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + V ++ G+ALGF + FAA+++AG +I L G A DP +N R++ Sbjct: 68 ITAIVLELATGLALGFLVYLVFAAIQSAGSLIDLSSGFQMAQAFDPQMMVNGAQFTRLLQ 127 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 M AL L +G+ +I L +F P+ G + A+ +A + +FL + +A PL Sbjct: 128 MAALALLFASDGYHLVIGGLTGSFAAFPLAGGIDLARPVEAMVQAVTGMFLCAVQIAGPL 187 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + +LL ++ LGLL R+AP L+ F +GFPL + + + L L + L + N Sbjct: 188 MVVLLLADVGLGLLTRVAPALNAFALGFPLKILLTLVLAGFLFLGLPRIVAVLAEQAANT 247 Query: 251 LADI 254 L + Sbjct: 248 LMGV 251 >UniRef50_Q89AZ0 Flagellar biosynthetic protein fliR n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIR_BUCBP Length = 257 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 98/251 (39%), Positives = 159/251 (63%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q ++ ++ F+P +R+LAL STAP+ + + + K++KL +A +I++ + LP Sbjct: 1 MFQFNFNDFILFIYNLFFPAVRILALFSTAPLFNSKFIEKKIKLIMAFVISWIFSSFLPK 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ +FS + + ++Q+LIGI LG TMQ F+++ +GEII LQMGLSF++ D S Sbjct: 61 VNIAIFSVDGILIIIEQMLIGILLGLTMQLIFSSIFMSGEIISLQMGLSFSSLFDFNSRS 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 N+ L+ + + LLLFL +NGH+W++S L DTF T+PI L+ N FL + IF Sbjct: 121 NLSALSHFVHIFLLLLFLEWNGHIWMLSALFDTFITIPIQKIYLDPNIFLKVVNFSKYIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +ML P+I + L LNL++G+LNR+APQ+SI +GF +TL VGI L+ +P+ C Sbjct: 181 FDSIMLLFPIIIVQLLLNLSIGILNRVAPQISILSLGFTVTLLVGIILLYFFIPIFPSSC 240 Query: 241 EHLFSEIFNLL 251 +F + + + Sbjct: 241 IVIFRRLQSFV 251 >UniRef50_C6B1H0 Type III secretion system inner membrane R protein n=10 Tax=Rhizobium RepID=C6B1H0_RHILS Length = 250 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 3/239 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF---SFF 69 + F R+ + P S VP ++++ +A ++ A+ P L P + Sbjct: 9 VLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYPAVHTGAGT 68 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + L + LIG+ G + ++ A II + +G + D L+ + Sbjct: 69 YIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADILEDTPETSLSGFI 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 +++ + H + L+D++ T+P GG ++ T L L+ P Sbjct: 129 TFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTYIMLRLSSP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 + L N+++G +N++APQ+ ++ I P L G+ L+ + + F I+ Sbjct: 189 FLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFGQSFGSIY 247 >UniRef50_B9L8B4 Flagellar biosynthetic protein fliR n=1 Tax=Nautilia profundicola AmH RepID=B9L8B4_NAUPA Length = 255 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 112/244 (45%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + Y +R+ + ++ P + ++P VK A ++ + P P + L Sbjct: 12 VVTYLLLFVRISSFLAFMPFFNYTAIPMNVKAAFAFWLSILLFPITPKFAYEINIATVLL 71 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + ++ +G +Q F ++ AGE I MG + A +DP + + ++++ + Sbjct: 72 SVLNEVAFAFFVGMALQMVFDVLKYAGEQISFVMGFTLANVMDPNAGVQTTIISQFFTWV 131 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A+++FL+F G I L TF LP G N + S FL G+ +A P+I Sbjct: 132 AVMMFLSFGGDHLEIMFLDKTFAMLPFGEFFSYHNVYEYFITYMSKYFLLGIAMAFPIIA 191 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 + L ++ G++ + PQ ++ V+GFP+ +T+ ++ A++ + + ++F L Sbjct: 192 ISLMGDIIFGMIMKTMPQFNLLVVGFPIKITISFMVLIAIIASLMQLFSNEILQVFGALL 251 Query: 253 DIIS 256 I Sbjct: 252 RFIG 255 >UniRef50_D1B6A7 Flagellar biosynthetic protein fliR n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6A7_THEAS Length = 259 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 124/237 (52%), Gaps = 3/237 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E + L ++ +RVL L+ ++P+ S P V++ LA+M++ + PS+ V Sbjct: 4 EALVDVLAVHLLCSIRVLGLLMSSPVFMLPSWPIPVRMWLALMLSLLMVPSVDPQVPMVL 63 Query: 67 SFFALWLA---VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 +A V++ L+G +G A++ +G + G QMGL+ AT DP N+ Sbjct: 64 LATWTGMAIFAVREFLVGAMVGLLSGLPLYALQLSGYLEGSQMGLAMATLFDPTQEGNVA 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 +L ++ +L + L +NGHL LI + +F +P+G L+ + + +FL Sbjct: 124 LLGQVKYLLGIWFLLHWNGHLVLIEAINRSFSLIPLGKGVLDLPPGQPFGRWITDLFLLA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +LP++ LL ++ LG + R PQ+++F++G PL + +G+ L+ A++P + Sbjct: 184 IRFSLPIMGALLLADVGLGFVARTVPQINVFILGIPLKIGLGLILLMAVIPFVVDLF 240 >UniRef50_C6N719 Putative flagellar biosynthesis pathway, component FliR n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N719_9GAMM Length = 249 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L WL F+ +R+ ++ PI + R +P +L L ++ +A +P + + Sbjct: 5 LPWLTSLFFITIRLGTVLLFTPIQAIRQLPIHARLILIFTLSMLLANYVPQKS-ELSNNA 63 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L+ + + G+ L ++ AFA + AG++I + G + +P+ H P+ + ++ Sbjct: 64 ILFGGLAEFANGLILATSLYAAFAIFQIAGQLIDSETGYNATAVFNPSEHSQEPLTSHLL 123 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 MLA+L F + +GH WL L +F +P G L + F + K S +F M+A P Sbjct: 124 SMLAVLFFFSLDGHQWLFKGLAYSFIIIPPGTLSLFAG-FTPVIKQFSFMFSMAFMIASP 182 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I LL L+L L+ R PQ+S + + P+ + G+ L+ ++ I P +FS+ F+ Sbjct: 183 IIIALLALDLCGALITRNMPQVSTYFLTLPIKILFGLFLLFMMLNYINPLTTTVFSQCFH 242 Query: 250 LLADIIS 256 +I+S Sbjct: 243 TWQEIMS 249 >UniRef50_Q2RQH6 Flagellar biosynthetic protein fliR n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RQH6_RHORT Length = 253 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 2/249 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 L + +R+ + P LS V +++ LA+ IT P++ A Sbjct: 3 DAFLNQNLFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPA 62 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + F + L + IG+ LG QF V AG I+G GL A DP + Sbjct: 63 PDNTAFLVLLIAVEATIGVFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSA 122 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++A + +A+++ H +I +V+++ P G P + L S F G Sbjct: 123 LIAGFLGEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQMPDTGDMVQLLVTILSSGFRLG 182 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 L LA P I + N LG++ R+ PQL++ + P + G++L+ +P + Sbjct: 183 LQLAAPFIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFLGH 242 Query: 244 FSEIFNLLA 252 F LA Sbjct: 243 FERGLINLA 251 >UniRef50_Q45975 Flagellar biosynthetic protein fliR n=3 Tax=Caulobacter RepID=FLIR_CAUCR Length = 251 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 119/235 (50%), Gaps = 2/235 (0%) Query: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW--LAV 75 RV A++ T P + ++++P R++L A+++ +AP + P+ S + Sbjct: 15 LVFARVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVGPIPSTLGGLGGAVI 74 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 ++LIG+ +G ++ ++ TAGEII +Q LSFA +P+ + +A + ML L Sbjct: 75 HEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFLSMLGLT 134 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L + + H I+ +V ++ P ++A + + F G+ LA P+I L Sbjct: 135 LVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLGVQLAAPVIVFSL 194 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 NLA GL+ R+ P IF + PL++ +G+SL+A + IA + E+ ++ Sbjct: 195 VFNLATGLVGRIMPAFQIFFVASPLSVILGLSLLALSLSGIAMVWTDRYRELLDI 249 >UniRef50_C2ED98 Flagellar biosynthetic protein fliR n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED98_9LACO Length = 252 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 114/249 (45%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + + + RV + +S APILSER+ P KL L + + A + V Sbjct: 3 MVQIQILGLIACRVFSFMSVAPILSERNFPNLCKLILGGGLILSAFSLAAAFEEEVALAV 62 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + +AV++ + G+A+G+ + F V G+ I Q G A DP + ++ Sbjct: 63 FILMAVKETIFGLAMGYLCRLVFFGVMITGQFIDFQDGFIMAQAYDPTMQSSTSQFGKMY 122 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 LA+++F + +I L+ +F + +G L + + K + F + P Sbjct: 123 YWLAIMVFFASGLYRQMIRGLMTSFDIVSLGYPTLTDESIGGIVKLFAKTFEMAFNMGAP 182 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I +L +++ LG+L+R PQL++ ++ + TV + ++P + F FSE+ Sbjct: 183 IIISILVIDIVLGILSRSIPQLNVLMLSLNVKTTVSFIISMLVLPNMVDFLASNFSEMIQ 242 Query: 250 LLADIISEL 258 +AD I + Sbjct: 243 NMADFIKSI 251 >UniRef50_C1SNG7 Flagellar biosynthetic protein fliR n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG7_9BACT Length = 257 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 131/249 (52%), Gaps = 1/249 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV-PVFS 67 + + + R+ A++ T P+ + +++ LA++I I PSL A + + Sbjct: 7 YTDTFVSFLMAVARIGAILFTVPVFGSNVIKPQIRFVLAILIAMVIFPSLEAMPYGNLPT 66 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + ++IL+G+ +G F F + G+I+GLQMG S +DP S+ + +++ Sbjct: 67 GIIIVMVFKEILVGVCIGILSNFLFIGAQLGGQIVGLQMGFSVVNVMDPQSNTQLSIISS 126 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++ LL F+ GH ++ + ++F ++PIGG +N AF + K S IFL + + Sbjct: 127 FLNIGMLLFFIAVGGHYLVLGAIAESFRSIPIGGAEINPIAFNYIAKLFSYIFLIAIKIM 186 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P I LL + +G++ ++APQ+++ ++GFP + +G+ ++A M E + Sbjct: 187 APAIITLLIFSTVIGVIGKLAPQINLMIVGFPAKIAIGLIIIALGMNYFFIAFEKILLRY 246 Query: 248 FNLLADIIS 256 F +A++I Sbjct: 247 FEEIANVIR 255 >UniRef50_B0K9T0 Flagellar biosynthetic protein fliR n=11 Tax=Thermoanaerobacterales RepID=B0K9T0_THEP3 Length = 260 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 126/252 (50%), Gaps = 2/252 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 L + ++ +R+L + P ++VP K+GL + ++ D+ + + Sbjct: 7 LLQNVQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPVDLQINNV 66 Query: 69 F-ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + ++G+ +G +F+A+ AG++I Q+G +D S +P++ Sbjct: 67 LDYFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGN 126 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN-SNAFLALTKAGSLIFLNGLML 186 + +L +L+F+ NGH L ++L + +PIG + S LTK S +F+ G + Sbjct: 127 FIYILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGMSQVLTKMVSDMFILGFRI 186 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 + P+I L +L LG+++R PQL++F+IG P + VGI + ++P+ + +F+ Sbjct: 187 SAPIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMFNG 246 Query: 247 IFNLLADIISEL 258 + + ++ + Sbjct: 247 MNADIFRLMKFM 258 >UniRef50_A8RW99 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW99_9CLOT Length = 259 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 112/254 (44%), Gaps = 4/254 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 + +++ L R+ L+ P+ S R VP V+ GL + ++ IAP + + V Sbjct: 2 DSSVFEYFDIFLLVLARMGGLVFINPVFSRRGVPPMVRTGLVLALSLLIAPGVRSGAGQV 61 Query: 66 FSFFALWLA---VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 +F + ++++++G+ +G F + AG+ + GL+ +DPA + Sbjct: 62 MAFSTFDMVESLIREVILGLVIGCVFHIFFYMLYVAGDFLDTVFGLAMGKVMDPAGGVQT 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFL 181 +L + +++ L F HL ++ L ++ +P+G G L + +FL Sbjct: 122 SILGQFVNVFFYLYFFATGCHLTMVRLFAYSYQVVPVGAGAILGGRILWYIITLFGSVFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + L LP + L + +G+L ++ PQ+ +FVI + +GI LM + F + Sbjct: 182 MVIKLVLPFVAAEFILEMTMGVLMKLIPQIHVFVINIQCKILLGIMLMMLFAYPMGAFMD 241 Query: 242 HLFSEIFNLLADII 255 + ++ Sbjct: 242 RYTEAMMTEAQKLL 255 >UniRef50_Q2LT08 Flagellar biosynthetic protein fliR n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT08_SYNAS Length = 259 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 11 SWLNLYFWPLLRVLALISTAPILSE-RSVPKRVKLGLAMMITFAIAPSLPANDVPVFS-- 67 + + LRV ++I PI +++P +K GL+++ITF + P + + Sbjct: 9 EQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGFQLMEL 68 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + +ILIG+ +GF +F FA ++ AGE+IG QMG S +DP + + ++++ Sbjct: 69 TPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQVSLISQ 128 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + LA+L+FL N H +S + ++F + L L +F+ + ++ Sbjct: 129 LKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEVFIIAVKIS 188 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ +L+ ++ALG++ R PQ++IF++GFPL + +G+ + P+ +C LF+ + Sbjct: 189 APVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNYCIRLFNGL 248 Query: 248 FNLLADII 255 + ++ Sbjct: 249 AKQIHMLV 256 >UniRef50_Q0ANB4 Flagellar biosynthetic protein fliR n=2 Tax=Hyphomonadaceae RepID=Q0ANB4_MARMM Length = 250 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 109/242 (45%), Gaps = 2/242 (0%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPV 65 + + + R+ A++ P E S+P R +L A++ + P + +P Sbjct: 4 ELPALVYAAGLVFARLGAILMLLPGFGEPSIPVRFRLAFALLFCLILGPIIAPSLPVMPE 63 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + + +++IG+ +G + + AG++IG+Q GL+ A DP+ ++ Sbjct: 64 QPLAMAGIVMSELIIGLMIGAVARIFMSTAAVAGQVIGMQSGLAMAQSFDPSQGAQGALI 123 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + +++ L+L L N H L+ + +++ G P ++A A F G+ Sbjct: 124 STFLNLTFLMLLLATNTHHMLLQMAANSYQVFDPGSMPSLTDAADWALSAFIDAFRIGVQ 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA PLI L LALG+L+R+ PQ IF I P + +G+ ++A + ++ Sbjct: 184 LASPLIMYGLLFYLALGVLSRLMPQAQIFFIAMPSNIMIGLFILAIALGAMSAVWLERMQ 243 Query: 246 EI 247 Sbjct: 244 RF 245 >UniRef50_B9Z4S1 Flagellar biosynthetic protein fliR n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z4S1_9NEIS Length = 259 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 2/253 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVP 64 + L +WP R LA ++ AP+ E P RV++G A+ + A P+L + Sbjct: 5 FADLIQLLPALWWPFCRFLAALAVAPLSGEGMTPARVRIGAALALAVASLPALRGMPAID 64 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 FS + + +AV+Q +IG+ G Q A + G ++ QMGLS A DP + + V Sbjct: 65 PFSLYGIAVAVEQAIIGLIFGLAFQLVMAVLSLLGFLVSSQMGLSMAVMNDPGNGNSSDV 124 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 ++ ++ +L ++F +GHL LI ++ +F P+G +++ + L + + + Sbjct: 125 VSTLLYLLGAMVFFAVDGHLVLIQVVYTSFKAWPVGSG-IDALSLQTLANSVGWVLAAAI 183 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 +LALP + + + GL+NR+AP L++F +GFP+ G+ + ++ + L Sbjct: 184 LLALPAVFATFVVQIGFGLINRVAPALNLFSLGFPVVTLFGLGTLGLIVRFVPEQYLRLS 243 Query: 245 SEIFNLLADIISE 257 ++ +L ++ Sbjct: 244 GQLLQMLDGMLGH 256 >UniRef50_A9HH75 Putative flagellar biosynthetic protein fliR n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HH75_GLUDA Length = 270 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 6/263 (2%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 ++ L RV AL+ AP L E + P RV+ G+A+ T AI P + Sbjct: 6 SFPGGSLPVLATMFLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRL 65 Query: 63 VPV------FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 V V A+ + V ++L G+ +G+ + A+ A +++ + GL+ D Sbjct: 66 VEVSGTALRMPSVAIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDS 125 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 + ++ + ML ++FL+ + ++ + ++ P G P+ + ++T+A Sbjct: 126 ELGASSTAISHMASMLIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEAT 185 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 S F L LA P + + LG+LNR+ P + ++ I P L G+ L+A L+ ++ Sbjct: 186 SQTFALALQLAAPFVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVM 245 Query: 237 APFCEHLFSEIFNLLADIISELP 259 + +++ L P Sbjct: 246 TGVWQERVADLLVALPGTGGSPP 268 >UniRef50_A3NFU9 Flagellar biosynthesis pathway, component FliR n=10 Tax=pseudomallei group RepID=A3NFU9_BURP6 Length = 258 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 1/239 (0%) Query: 19 PLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQI 78 P R+LA +S AP + E +VP R+++ +A+ + P++ +PVFS A +QI Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDPVAIPVFSARGALAAAEQI 77 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 LIG+ G F A G ++ QMGL+ A DP + V++ M + ++LLF Sbjct: 78 LIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASILLFF 137 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 + HL ++ +L +F P+G P++ + L + +F +LA PL+ + L Sbjct: 138 AIDAHLVVVQVLYTSFRVWPVG-TPIDLPSLKPLAYQAAWLFSTTTLLAAPLVFATVVLQ 196 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISE 257 + L+R P +++F +GF + G+ ++ A++ + + + ++L + Sbjct: 197 IGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYASMTRHVLDVLEHHLGA 255 >UniRef50_B0THC2 Flagellar biosynthetic protein fliR n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0THC2_HELMI Length = 266 Score = 132 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 146/264 (55%), Gaps = 7/264 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ L+ L++ ++RV ++ AP+ + K+GL+ MI + S+P Sbjct: 1 MEAVINIMLNHLDVLLLMMIRVAGILVLAPVFNFPGFNNLAKIGLSFMIALILFLSMPDG 60 Query: 62 DVPVFS---FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 +PV F + + Q++L+G+A+GF +Q FAA+ TAG +I +Q+G +DP Sbjct: 61 ALPVPPQELFGYVIVVAQELLLGLAIGFILQLLFAAILTAGHLIDIQLGFGIVNIIDPLW 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN----SNAFLALTK 174 +P+ + +LALL+F+ F+GHL LI +L D+F LP G P + + + + Sbjct: 121 GAQVPMTGVFLQILALLIFVIFDGHLLLIQVLADSFRILPAAGSPFSLALAGSISDFIVR 180 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 S + L G+ LA+P+I ++L ++ALGL++R PQ+++FVIG PL + VG++ + +P Sbjct: 181 LVSGVLLIGVQLAMPIIGIILINDIALGLVSRTVPQMNLFVIGIPLKIIVGVAFLWITLP 240 Query: 235 LIAPFCEHLFSEIFNLLADIISEL 258 LF+ F ++D + L Sbjct: 241 FYIDGLNRLFTLSFTQVSDFLRIL 264 >UniRef50_B0SDH1 Flagellar biosynthetic protein fliR n=6 Tax=Leptospira RepID=B0SDH1_LEPBA Length = 260 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 124/257 (48%), Gaps = 4/257 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVP 64 E ++ + + L+R+L L AP S S+ +++ + M++ + P + VP Sbjct: 2 EAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMPPVP 61 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + ++LIG+ +GF + F+A + AGE Q+G + +DP + ++P Sbjct: 62 GHMINFGIMILSEMLIGVFIGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPA 121 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLN 182 + + +++A LFL H +LI L +F + I +NS + + A +F+ Sbjct: 122 IGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFTGKVNSGLYRLVEDAIGAMFVV 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 +ALP++ +L ++LA GL+ + A Q+++ + FPL + +G + A + IA Sbjct: 182 SFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMVQ 241 Query: 243 LFSEIFNLLADIISELP 259 + + ++ E P Sbjct: 242 GIQISMDKASLLVREWP 258 >UniRef50_C0A797 Type III secretion system inner membrane R protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A797_9BACT Length = 252 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 116/250 (46%), Gaps = 3/250 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + WL ++ LR L ++ P+ + +P +++ A M +A +P +P + Sbjct: 3 VEWLLVWTLTGLRALGVVMLLPVPGGKVLPAMLRVACAFMFPTLLAGIIPHAPMPEPPGW 62 Query: 70 ALWL--AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 AV+++++G+ALGF + FA AG +I ++GL A D + P+ A Sbjct: 63 PWLAEAAVREMVLGLALGFVGRLVFAGAELAGRLIANELGLVAAPGFDVPTPSQEPLPA- 121 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + A L+F GH ++ V +F P G + A LT + + G+ +A Sbjct: 122 FIGSFAGLMFFLMGGHEGALAAFVRSFDFAPAGAARFSVLAGETLTICTAQVIEFGMRMA 181 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P I L ++LA +L R P++++F+I +P+ VG+SL+A L + + Sbjct: 182 APFIALNFVISLAFSILGRAVPRMNVFIISYPVRTLVGLSLLAGAGGLFGRYLWRAMDAL 241 Query: 248 FNLLADIISE 257 + +++ Sbjct: 242 PWTMLELVGR 251 >UniRef50_D2S978 Flagellar biosynthetic protein FliR n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S978_9ACTO Length = 254 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + R + AP + RS+P VK LA+ ++ A+ + + F + Sbjct: 10 MAALLLGTARATGFVLLAPPFNSRSIPAPVKGALALALSVALMTRIAPELPDPTTGFLVV 69 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 AV ++ IG ALGF + FAAV+ AG++I L G S DP S + R+ +L Sbjct: 70 GAVTEVAIGAALGFVVHVLFAAVQYAGDLIDLTGGFSLQPAYDPLSMTTSSSVGRLHYLL 129 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A L T GHL ++ ++ LP+GG L A S++FL L +A P++ Sbjct: 130 ATTLLFTSGGHLLVVRGFATSYEGLPVGGSVPTEQLAQVLITALSMMFLAALQIAGPMVA 189 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 +LL ++AL LL+R AP L+IF GFP+ + + ++L+ PL+ P + L + Sbjct: 190 VLLLADVALALLSRAAPALNIFSFGFPVKIMLTMALLGLTFPLLPPALDALLEHAVRAMV 249 Query: 253 DI 254 + Sbjct: 250 SL 251 >UniRef50_C1F995 Flagellar biosynthetic protein fliR n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F995_ACIC5 Length = 260 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 121/249 (48%), Gaps = 1/249 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 W +L+ +LRV L+ AP+ S ++P +VK + +T +AP + A + Sbjct: 8 WPQYLSALVLVMLRVSGLMLFAPVFSSTAIPPQVKAVFTLAVTVCLAPVV-AGLPHADAR 66 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + ++ +G+ G ++ + AG+++G+ S +DP + + +P++ + Sbjct: 67 LGPQEILSELAVGLLFGICLRMLMEMLTFAGDLLGIAFSFSLVNLLDPNAPVQVPLMGQF 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 +L L+ L+ +I+ L+ TF +P+G L++ A+ + G+ +FL L LA Sbjct: 127 FSLLGTLVLLSTGLDRTMIAALMRTFAVVPVGSFVLSAKTAWAVAEMGTGLFLAALQLAA 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ + ++ A+GL R++PQL + P+ +G ++ + L F E F + Sbjct: 187 PVMVATMLVDFAVGLAARLSPQLPALSLTVPVKTMLGFVVLIGSLALWPEFIEARFDALL 246 Query: 249 NLLADIISE 257 N A ++ Sbjct: 247 NTAAVLLHA 255 >UniRef50_A3ZNZ1 Probable flagellar biosynthetic protein fliR n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNZ1_9PLAN Length = 267 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 2/251 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E L L ++ L RV +++TAP+ P +VK LA+ I+ I P Sbjct: 8 EPTLHQLFIFVTVLTRVSGMLATAPMFGSNYAPAKVKAFLAVTISMMITGLFWGEKFPQP 67 Query: 67 SFFALWLAV--QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + +L V ++ IGI+ G ++ FA V+ G+++G GLS A +PA ++P+ Sbjct: 68 DHWMSYLVVLGGELFIGISFGLGVRILFAGVQITGQMLGQIGGLSVADAFNPAFDESVPM 127 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 LA + DM+ + +F GH ++I L+ TF +P G + L S+ F+ G+ Sbjct: 128 LAVLFDMVVVAMFFCLGGHRFMIGALLSTFADVPPGVGLASPEVVHVLVSTLSISFMLGV 187 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 A P LL L +GL++R PQL++ +GF L + + + + + + Sbjct: 188 QAAAPGTVALLIGVLVMGLISRTLPQLNLIAVGFSLNTMLLMIFVFLSVGSMGWLFQDQL 247 Query: 245 SEIFNLLADII 255 N + D++ Sbjct: 248 EPTVNSIRDLV 258 >UniRef50_A4A5Y4 Flagellar biosynthetic protein fliR n=3 Tax=unclassified Gammaproteobacteria RepID=A4A5Y4_9GAMM Length = 259 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ T E+ L+ Y WP LRV A+ API S S+ RV++ LA+++ +AP LP Sbjct: 4 MEFTPEELTLLLHTYLWPFLRVSAMFLAAPIFSYSSISVRVRVLLAVLVAALVAPLLPTT 63 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L LA++++ IG+ +GF MQ FAAV AG + + MGL FA VDP + + Sbjct: 64 PVVEPLSAVGLVLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMSVDPQNGV 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PV++++ +LA LLFL +GHL LIS +VD+F +P+G F + G+ +F Sbjct: 124 QVPVVSQLNVVLATLLFLAIDGHLILISAVVDSFGLVPVGSAISPEGMFSNVASLGTQLF 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L+LALP +T +L +N+A G++ R APQL+IF +GFP+T+ G M +P+ Sbjct: 184 ASALLLALPTLTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPMFISTL 243 Query: 241 EHLFSEIFNLLADIIS 256 + S ++ Sbjct: 244 QRFLSLGLEQTLLVLG 259 >UniRef50_Q30PK9 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30PK9_SULDN Length = 254 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 126/242 (52%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 +++ + R AL PI S ++P +K LA T S+P + + Sbjct: 10 TYIVGFILLFFRFAALFIAVPIFSHNNIPISIKTSLAFFFTIVFYSSMPPLTMVITVPSI 69 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + + ++L G+A+G +Q AF A+ AG I MG S A+ +DP S ++MP++++ + Sbjct: 70 VMAILSELLFGLAIGVILQIAFNAITFAGGQISFMMGFSMASAIDPQSGISMPIISQFLS 129 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 ++AL++ + H W++ + + +P+GG ++ N F + KA S +FL G M+A P+ Sbjct: 130 LMALMMLFAIDMHHWILLFIDSSLQNIPLGGFVMSENLFTYIIKAMSNMFLVGFMIAFPI 189 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 L L ++ G+L + PQ ++ VIGFP+ + V +++ A + I + E FN Sbjct: 190 TALGLLADIIFGMLMKTMPQFNLLVIGFPIKIMVSFAVLIATISAIMLIIKGQMVEAFNF 249 Query: 251 LA 252 L Sbjct: 250 LE 251 >UniRef50_C5CXN3 Type III secretion system inner membrane R protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CXN3_VARPS Length = 239 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 1/232 (0%) Query: 29 TAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF-ALWLAVQQILIGIALGFT 87 PI +P V++ L + ++ A+A L A + L+ A+ ++ +G LG Sbjct: 1 MTPIFYAVPLPASVRMLLVLGLSIALAFGLSAPVGAWMGWSELLFSALAELALGATLGLG 60 Query: 88 MQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLI 147 + AF A AG+++ +Q+G A +DP + +PVL + LA+L+F NGH L+ Sbjct: 61 ILLAFGAFSIAGQLLDVQLGFGIAQVIDPVTQRPIPVLTSAFNYLAVLVFFLLNGHHALL 120 Query: 148 SLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRM 207 + + P+G +A + K + +F G LA P++ +L + ALG++ R Sbjct: 121 RGISYSLERFPVGASWSIGHAVAPVLKQAAGLFSLGFALAAPVVFCILLVEFALGVVGRN 180 Query: 208 APQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELP 259 PQ+++F +G P+ + VG+ ++ I ++ I + I P Sbjct: 181 LPQMNMFTMGIPVKILVGLVALSFWFAGIGSVMTRAYASIASTWDGIFVAAP 232 >UniRef50_A6DDV7 Flagellar biosynthetic protein fliR n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDV7_9PROT Length = 254 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 107/243 (44%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + + +R+ + +S P + ++P VK L++ ++ P +P + + L Sbjct: 11 VVTFLLLFIRISSFLSFLPFFNYMNIPMNVKAALSIWLSILFFPIVPKVNFEINLINILL 70 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 +I +G +Q F ++ A E I MG + A +DP +L++ + Sbjct: 71 AIFNEIAFAFFVGMALQLIFDILKFAAEQISFVMGFTMANVIDPNFGGQSTILSQFFIWI 130 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A+L+FLTF G I LL LP G + F+ G+ LA P+I Sbjct: 131 AILVFLTFGGDHLEILLLSKFMSNLPFGAFFNYHKIYEYFLVYMGKYFMIGVGLAFPIIA 190 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 + L ++ G++ + PQ ++ V+GFP+ + V ++ A++ + E+F ++ Sbjct: 191 ISLMSDIIFGMIMKTMPQFNLLVVGFPIKIFVSFIVLMAILSSMMLVFSREIKEVFKIVL 250 Query: 253 DII 255 I Sbjct: 251 GFI 253 >UniRef50_C9R9Y0 Type III secretion system inner membrane R protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9Y0_AMMDK Length = 255 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 2/239 (0%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFSFFALWLAVQQIL 79 R+L P L+ +P +LG+AM ++ + P LP + ++ + Sbjct: 17 ARLLGFTLAFPPLALPGLPVLWRLGVAMSLSLFVTPLLPPDRPFSGGAWEWALTWAGEFT 76 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G+ +GF F A+R AG+++GLQMG A + + +LA +L +LF T Sbjct: 77 LGLGMGFVAGLVFQALRVAGQLMGLQMGFGMAELL-TLGGVPETMLAEFFFLLGTVLFFT 135 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 199 + + +LI LV ++ LP+GG + A K + L LA P++ + + ++ Sbjct: 136 TDAYQYLIEALVRSYEVLPLGGAAVKGGAIWLTVKLVGGMLATALQLAAPVLAVTVLIDA 195 Query: 200 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 +LGLL RM PQ+++F++GFPL + + L+ L + L E+ + L + L Sbjct: 196 SLGLLVRMVPQINVFMLGFPLKIGASLLLLGLLATTLGTVIGRLLQEVAHNLLLLTRGL 254 >UniRef50_A8TPM4 Flagellar biosynthetic protein fliR n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPM4_9PROT Length = 255 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 2/244 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 E + R A++ P + E +P RV+L A+ + A+AP + Sbjct: 4 EEYLPLRIFQIMLVFARTSAVLLLLPGIGEVFIPVRVRLLFAVALALAVAPVIAPQLPPE 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + L L V ++LIG+ G + + + TAG +I GL+ AT +P+ Sbjct: 64 PTSAAGLLTLVVGEVLIGLYFGLVARILWLTLDTAGRVISFSTGLASATVFNPSLSEQGS 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 + ++ +L +++ + H +I +V+++ GGE + + A+T+ S F Sbjct: 124 AIGLVLTLLGIMMLFIADLHHMVIRAVVESYAVFRPGGELMIGDFSEAITELVSGSFKVA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + L+ P L + LG+L R+ PQL IF IG P + +G+ + ++ + Sbjct: 184 VQLSAPFFVFGLLFFVTLGVLARLMPQLQIFFIGLPAQIYLGLFVWVTILGALMSAFLTY 243 Query: 244 FSEI 247 +++ Sbjct: 244 YADT 247 >UniRef50_A1UTW5 Flagellar biosynthetic protein fliR n=34 Tax=Rhizobiales RepID=A1UTW5_BARBK Length = 265 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 6/237 (2%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-----NDV 63 + L RV A + P +S +P +V+L +A+ + I P + + Sbjct: 18 LNQLVLLAMLVFARVGACLMLMPGVSSIRIPVQVRLFIAVSFSLIILPMVADFFKDFGEK 77 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P F+ F L ++LIG+ G A++ II + MG S + Sbjct: 78 PDFALFVRALC-SEMLIGVTFGVIAHVYLWALQFMATIIAMSMGYSGQPGHNVIDSTPET 136 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 +A ++ ++ ++LF + H++ I L+ ++ + P A + A S FL Sbjct: 137 QIAHLLVLVGVMLFFASDLHMFAIRGLLASYDVVSPVFIPNPEAALIDYRDALSKAFLTT 196 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L +A P I + +N+A+GL+N++ P + ++ I P + G+ L+ +MP I F Sbjct: 197 LRIAAPFIVYAVLVNIAVGLVNKLTPNIPVYFISLPFVVAGGLFLLYFIMPEILNFF 253 >UniRef50_A9AP22 Type III secretion protein SctT n=18 Tax=Burkholderia RepID=A9AP22_BURM1 Length = 270 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 3/250 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 L + + R+L ++ P+ +E+ V V+ GLA++I +AP++ A + Sbjct: 8 FNDLAGTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQIAS 67 Query: 66 FSFFAL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 F L ++ ++G+ L A++ G +I Q G A F DP Sbjct: 68 LPFVTWCVLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGP 127 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG--GEPLNSNAFLALTKAGSLIFLN 182 + ++ +A+ LF+T G L+ L ++ PIG G +S + + IF Sbjct: 128 TSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEW 187 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 + LA P+I +L+ + L +GL+ R PQL++FV PL + + +M +P++ Sbjct: 188 MVKLAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHA 247 Query: 243 LFSEIFNLLA 252 L S L+A Sbjct: 248 LLSPDSGLVA 257 >UniRef50_B6AV41 Flagellar biosynthetic protein FliR n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AV41_9RHOB Length = 253 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 3/250 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-P 59 M + E W + + L RV AL+S P L E S+P RVKL +++ ++ + P + Sbjct: 1 MSSLVPEFWTPYALSFILVLFRVAALVSLLPALGEASIPARVKLVMSVCMSLIVFPIVHD 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + + L A+ ++ IG+ GF ++ ++ AG I LS + A Sbjct: 61 VSQNSLAGANWLSAAIAEVGIGLWFGFMLRVFVFCLQIAGSIAAQSTSLS--QILGSAGA 118 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P L ++ + L L+ H+ + L+ ++ LP G P S A + Sbjct: 119 EPLPALGHVITTAGMTLALSLGLHVSAVQYLIGSYTILPTGQLPDISTISEAGVAQIAWG 178 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F LA P L L NL LG++NR PQL + +G P+ + L+A +P+I Sbjct: 179 FQLAFSLAAPFFILSLLYNLTLGVINRAMPQLMVAFVGAPVITAGALVLLAISIPVILKT 238 Query: 240 CEHLFSEIFN 249 + N Sbjct: 239 WAGALFGLLN 248 >UniRef50_B8DQ95 Flagellar biosynthetic protein fliR n=7 Tax=Desulfovibrionaceae RepID=B8DQ95_DESVM Length = 264 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 2/250 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFS 67 ++ + + +RV ++ P + P +VK L ++ T A+ P SLP +P Sbjct: 8 VASMLSFLLTFMRVSLVLFLLPFFGGEAAPTQVKAALCLVFTLALWPHVSLPGGQMPTHP 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 F + L ++++G+ LG T+ F FA ++T G+++ QMG + T DP + N+ + + Sbjct: 68 FSLIVLLAGELIMGLMLGMTVHFLFAGIQTGGQVLATQMGFTMITLADPLTGANVSITSH 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + M+A+L FL +GHL+++ V TF +P GG L + +F+ + +A Sbjct: 128 FLYMVAMLSFLVLDGHLYMLRAFVRTFELVPAGGLLLTPMLVKEVLALSGSMFVLAVKIA 187 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ L + LAL L+ R APQ+++ +IGFPL + VG + L ++A + Sbjct: 188 APVLVSLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFIGMLFTIMADKIREFIVGM 247 Query: 248 FNLLADIISE 257 ++ ++ Sbjct: 248 DPMMMHLLQA 257 >UniRef50_B8EL38 Type III secretion system inner membrane R protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EL38_METSB Length = 249 Score = 129 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 4/233 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS----FFALW 72 F R+ A + P +S +P RV+L + IT + P L P S F + Sbjct: 11 FVLFCRIGACLMIMPGISSARIPVRVRLFVGFAITLGLTPILSDEVGPKISAESPFILVQ 70 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + + LIG +GF + F A+ I + +GLS + P + ++ + Sbjct: 71 TILSESLIGGLIGFLGRIFFGALDALANAIAMAIGLSSPLAPPTDDNEPAPAIVSLISLG 130 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 AL+LF N H ++ L+ ++ P+ G + + + + F L ++ P I Sbjct: 131 ALVLFFLTNLHWEVLRGLLASYSVWPVSGLFEARLGLVEIGNSLARSFALALRVSSPFIV 190 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L +NLA+G+ +R APQ+ I+ I P G+ L+ + FS Sbjct: 191 YALIVNLAIGIASRFAPQIPIYFITVPAVAAGGLFLLYITCRSLLELFVAGFS 243 >UniRef50_Q1NP89 Type III secretion system inner membrane R protein n=2 Tax=Deltaproteobacteria RepID=Q1NP89_9DELT Length = 263 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 125/252 (49%), Gaps = 3/252 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFS 67 L ++RV L+ P++ +VP +VK+ L +M + +AP +P A D+P + Sbjct: 11 TDQLMRVVMIMVRVGPLLFLMPVIGAPNVPTQVKILLVLMTSLVLAPMVPVSAADLPDTA 70 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + +I+ L ++F FAAV TAG+++G+QMG+ A +DP + + Sbjct: 71 LGFAHFVILEIVFVAILALFVRFVFAAVETAGQVVGVQMGMGMAGVMDPVFGNQISPVGM 130 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG-EPLNSNAFLALTKAGSLIFLNGLML 186 + ++ A+LLFL +GH + +V + + G ++ + + + S +F+ +M+ Sbjct: 131 LWNIAAILLFLAIDGHHLFFAAMVQGYQWVGPGQLAAVSQLTYEGMMEGASQMFVLAIMI 190 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 P+ L ++ +G++ + PQ+ I ++G P+ + +GI M +AP F Sbjct: 191 MAPVSVALFFSHVGMGVIAKTVPQIPILIVGMPMNIAIGIVFAGLAMGYLAPLLIARFEM 250 Query: 247 IFNLLADIISEL 258 + LL I + L Sbjct: 251 LQRLLPGIGAGL 262 >UniRef50_A6LLB0 Flagellar biosynthetic protein fliR n=2 Tax=Thermosipho RepID=A6LLB0_THEM4 Length = 254 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 124/257 (48%), Gaps = 5/257 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 + Q+L+W L + R+ + P+LS R +P VK+ L + +++ + P + Sbjct: 3 LFDFVETQFLNWGML----ISRITGMFIITPLLSGRFIPTTVKVFLVLSLSYMMLPQTNS 58 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + ++G A+G A AGE++G++ G AT +DP Sbjct: 59 IPLNTPVIHIVLSLTNNFIVGFAMGLMAFMILGAFSIAGELLGVESGFGLATSMDPTM-E 117 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++ + + +LA+ +F++ NGHL + ++D+ P+ + L+ N +T +F Sbjct: 118 ESPIIGQFVFLLAIFVFISLNGHLVVYEAILDSIKIFPLDLDFLDFNFTKFITTKFVEMF 177 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L + LP+I + +N+ LG+L+R+ PQ+++F++G PL + + ++PL A Sbjct: 178 FIALKIGLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPLKSLLVFLIFLGMVPLWAETS 237 Query: 241 EHLFSEIFNLLADIISE 257 L + L +S Sbjct: 238 AKLTILLEKTLEHFLSG 254 >UniRef50_B6BI91 Flagellar biosynthetic protein fliR n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BI91_9PROT Length = 255 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 124/252 (49%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +++ + R AL API S +++P +K +A T S+P Sbjct: 1 MVSWAEVFSDTYIVGFILLFFRFAALFMAAPIFSHKNIPMTIKTSMAFFFTIVFYSSMPP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + + + ++L G+A+G + A+ + AG I MG S A+ +DP + + Sbjct: 61 LQIDINVPTVVLAILSELLFGLAIGVVLLLAYNVITFAGGQISFMMGFSMASAIDPQTGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +MP++++ + ++ L++ L + H WL+ + + +P+GG L + F + KA S +F Sbjct: 121 SMPIISQFLSLMGLMILLAIDLHHWLLLFIDGSLSAIPLGGFLLTEDLFNYMIKATSNMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G M+A P+I L ++ G+L + PQ ++ VIGFP+ + V ++ A Sbjct: 181 IVGFMIAFPIIALSWLADVIFGMLMKTMPQFNLLVIGFPIKIMVAFMVLIATFSATMLIL 240 Query: 241 EHLFSEIFNLLA 252 + E FN L Sbjct: 241 KSQMLEAFNYLE 252 >UniRef50_Q52497 HrpC protein n=5 Tax=Ralstonia solanacearum RepID=Q52497_RALSO Length = 282 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 3/224 (1%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV-QQIL 79 +R++ L S P +++ + + G+ + +A P + S L++ ++I Sbjct: 30 VRIMTLFSILPATNDQMLTGIARNGVVYALAILVAAGQPVGLAALLSAGQLFMLTCKEIF 89 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G LGF F TAG +I G + +P + + L + L Sbjct: 90 LGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLGVTLLYA 149 Query: 140 FNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 G L+L+ ++ ++F P+G +N+ A L + IF + LA P++ +L + Sbjct: 150 AGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTMLLI 209 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + +G + R A +L +G P+ V + ++ AL+ ++ + Sbjct: 210 DAGIGFVARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVK 253 >UniRef50_A0NT10 Flagellar biosynthesis protein n=2 Tax=Labrenzia RepID=A0NT10_9RHOB Length = 258 Score = 127 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 4/234 (1%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAI----APSLP 59 S S L F R+ A + P VP V+L +A+ + A+ AP + Sbjct: 7 FFSTFSSSLLLAVFLLFCRIGACLMVIPGFGSNRVPVHVRLFIALSVALALSPLLAPGVQ 66 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 A+ ++L G +GF + AA+ T ++ + +GLS + Sbjct: 67 ASLPDEQLGTVAGFIGAELLTGAFIGFLGRIFLAALETLTTLVSMAIGLSNMPGMPIDGV 126 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++P +A + + A + N H ++ L ++ +P+G + + Sbjct: 127 DSLPPVANLFTVTATAMVFITNQHWEILRGLAASYEAIPVGQPLAAVTGLEQFAEQLAKT 186 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 FL L + P I + +N A+GL+N++ PQ+ ++ I P + G+ + ++ Sbjct: 187 FLLALRVCSPFIVYTVVVNFAVGLVNKLTPQIPVYFISMPFVIAGGLYFLYLVI 240 >UniRef50_D2C589 Flagellar biosynthetic protein fliR n=6 Tax=Thermotogaceae RepID=D2C589_THENR Length = 256 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 112/257 (43%), Gaps = 2/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ + R AP SER+ P V++ L + ++ + ++ + Sbjct: 1 METIFSFLEEKFLAWMCIFTRFTGFFLIAPFFSERAFPVEVRVFLGLFTSWLMLFTVDVS 60 Query: 62 -DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + L+G +GF + A AG I G Q+G + Sbjct: 61 IPLNTPVLSFTLNLFFNFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVLAFGEEE 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P ++ +AL +F+ G + + L D+ P+ + F + + S F Sbjct: 121 TNP-TGELVYFIALTVFVLIKGPVLVFEGLKDSIDVFPVNLTGVADGFFSYVVERSSDFF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L + P+I +L +++ LG+++R+ PQ+++F++G PL + +G+ L+ ++P+ A Sbjct: 180 VLILKIGAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWAEVA 239 Query: 241 EHLFSEIFNLLADIISE 257 + + + +N + +++ + Sbjct: 240 QKISALSWNAIQELLGK 256 >UniRef50_Q7UXG3 Probable flagellar biosynthetic protein fliR n=1 Tax=Rhodopirellula baltica RepID=Q7UXG3_RHOBA Length = 264 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 7/259 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--- 58 +Q + + L L L R+ L+ P + VPKR++ LA+++T + P+L Sbjct: 1 MQAFVDWIFNHLVLGTLVLTRLGMLLMAMPAIG-VGVPKRIRALLALVLTAILMPTLAAQ 59 Query: 59 ---PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVD 115 P+ ++ LIG+ +G T Q ++ AGE I G+ +D Sbjct: 60 CDHPSMPTIDNLPELAVAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSID 119 Query: 116 PASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKA 175 P + +MP LAR++ ML + L H ++ LLV++F +P G + A+ Sbjct: 120 PTTSSSMPALARMVGMLVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVV 179 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 +G+ +A P+I LL NL GL++R PQ+++ IG + + + A + Sbjct: 180 MGNSMASGVRVAGPVIAALLLANLVTGLISRTLPQINVLAIGLSINALAMLVVTALTIGS 239 Query: 236 IAPFCEHLFSEIFNLLADI 254 +A + + L+ I Sbjct: 240 VAWLFQEDLTANVERLSSI 258 >UniRef50_Q1Q6S6 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6S6_9BACT Length = 262 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 127/254 (50%), Gaps = 4/254 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVF 66 +++ L RV ++ AP+ S +P +++ +A+++ F + P+L N ++P Sbjct: 9 FINDLPFLMLVFFRVGGILLFAPVFSNTHIPMLLRIAIALILAFILYPNLDKNLHELPSE 68 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS--HLNMPV 124 + V++I IG +GF FAA AG ++ QMGL A DP+S P Sbjct: 69 LIPFGLIVVKEIAIGAIVGFAASILFAAFSMAGYLLSNQMGLDMAVIADPSSLSGDEEPT 128 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 ++ +++A+LL L +GH + I+ + +FH +PIG + + +F+ G+ Sbjct: 129 VSVFYNLIAILLLLAIDGHHYFINAIAQSFHAVPIGSFDYTTAILTKILSLFRTLFVIGI 188 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 +++P +L+ +A+ L+ ++A +++IFVI +P+ + +G ++ PL+ Sbjct: 189 KISIPAFVVLMLSVVAMALMAKVAKEINIFVIAYPIKIIIGFIVVFVSFPLMIGAMRMYI 248 Query: 245 SEIFNLLADIISEL 258 L ++S + Sbjct: 249 FGFEKGLMSLLSAM 262 >UniRef50_C7DF44 Flagellar biosynthetic protein FliR n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DF44_9RHOB Length = 260 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 2/240 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFF 69 WL LRV A+++ P L ERSVP RV+LGLA+ +T + P + P P Sbjct: 14 PWLFGAAVIFLRVGAMMAVLPGLGERSVPARVRLGLAIALTVLVTPLIAPDLPEPEEVSN 73 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + L + + IG+ LG +++ + TAG I LS F A P + ++ Sbjct: 74 LVGLLLIEASIGLLLGMSLRLFVFTLSTAGAIAAQSTSLSQI-FGGSAGAEAQPAIGHVL 132 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 L + + HL ++ +V ++ + P G + + F LA P Sbjct: 133 VTGGLTIAMITELHLRVVEFIVMSYGSFPTGVPLSATFVADFGVSRVAASFAFAFTLAAP 192 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L N+ LG++NR PQL + +G P+ G+ L+A P + F + Sbjct: 193 FFIASLIYNVTLGVINRAMPQLMVSFVGAPVITAGGLVLLALSAPTLLGLWIDAFHDFMG 252 >UniRef50_A7HWA0 Flagellar biosynthetic protein fliR n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWA0_PARL1 Length = 253 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 2/249 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-- 61 +T + + R+ A+I P L E S+P +V+L LA++++F + P + + Sbjct: 2 ITIDFLPQTAFTFMLVFSRLAAMIMLMPALGEASIPAQVRLMLALLLSFVMMPLVAGSYG 61 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 +P +++ +I +G+ +G + +A+ AG II QM LSFA VDP+ Sbjct: 62 AIPATVPGLVFIVCSEIAVGLFIGTAARLIMSALHVAGNIIAAQMSLSFAMNVDPSQGQQ 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++A + +L + L N LI+ + D++ G + K S F Sbjct: 122 GVLIANFLSLLGVTLIFATNLDHVLIAAMRDSYELFKPGEPIPVGDFLAMAVKMVSGSFR 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 GL LA P + L L +G+L+R+ PQ+ IF I P + +G L+ L+ + + Sbjct: 182 LGLQLAAPFLVFGLIFYLGIGILSRLMPQIQIFFIAMPANIALGFILLLLLLGALMTWFL 241 Query: 242 HLFSEIFNL 250 F + ++ Sbjct: 242 QGFEQYISM 250 >UniRef50_Q11LQ0 Flagellar biosynthetic protein fliR n=3 Tax=Phyllobacteriaceae RepID=Q11LQ0_MESSB Length = 248 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 4/236 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF---F 69 + F RV A P L VP +V+L +A+ + A+ L P S Sbjct: 6 ILAAFLAFCRVGACFMLMPGLGSARVPMQVRLFVAVGASLALLAHLWDVIAPHASDRPDI 65 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATF-VDPASHLNMPVLARI 128 L L +ILIG +G + A++ G I L G A V + P +A + Sbjct: 66 LLLLIGSEILIGSLIGLVARLYVLALQFIGSAIALMTGFGMAAGGVAIEENEPQPAVAAL 125 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + AL+L N H +I LV ++ PI A + S F + L Sbjct: 126 ISFSALMLLFVLNFHHAIIEALVASYRLAPIEALFDPRAALTDIADTLSEAFFVMIRLGS 185 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 P + + +NLA G +N++ PQ+ I+ I P + G+ L+ + F Sbjct: 186 PFVAYAILINLAFGFINKLTPQIPIYFISLPFVIAGGLLLLYFGIGTFLSLFADGF 241 >UniRef50_C3XLD0 Flagellar biosynthetic protein fliR n=2 Tax=Helicobacter RepID=C3XLD0_9HELI Length = 259 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 117/240 (48%), Gaps = 1/240 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + + LLR +I+ P + + ++K L ++T P L ++ Sbjct: 12 VANFLLLLLRFAGIIAFFPFFENQLITAQLKGTLIFLLTIFFIPLLDVVPPSEWTILRFI 71 Query: 73 LA-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 +A + ++++G +Q F + GE+I MGL+ A DP + P++ +++ + Sbjct: 72 VAGLSEVMLGFLASMALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQKPIVGQLLTL 131 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 LALL+ L + H + ++ +P+GG + N + K+ S IF+ GL ++ P+I Sbjct: 132 LALLIMLGLDYHHLFFYFVSESVKEIPLGGFMYSQNYIEYIIKSFSHIFVIGLTMSFPII 191 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 L+L ++ G++ + PQ ++ IGFP+ + + +++ ++P I + F F+ L Sbjct: 192 ALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAIAFAVLIVIVPAIILHFKREFLSAFDAL 251 >UniRef50_C5SN71 Flagellar biosynthetic protein fliR n=2 Tax=Caulobacteraceae RepID=C5SN71_9CAUL Length = 268 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 2/236 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFALWLA 74 +RV ++ P L +++VP R++L A + T + P + + +P L Sbjct: 28 MMIFVRVGSVAILIPGLGDQAVPPRMRLSFAFVFTLMLVPVVQSQMPALPPKLGAMAGLI 87 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 + + +IG+ LG M+ A+ AGE++ LQ LSFA +PA + + ML L Sbjct: 88 IHEAVIGLMLGMLMRTFLGALAIAGEVVSLQTTLSFAQTANPAQAQPSTSIGTFLAMLGL 147 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 +L N H I+ + D++ P + +A + + F+ + + P++ Sbjct: 148 VLIYATNLHHLFIAGMRDSYWVFPPMRPVMVGDATQLMIRTVGDTFMLAIQMTTPILVFG 207 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 L +N+A G + R+ P IF P+++ +G+++ A + + E L Sbjct: 208 LIINVAAGFIGRIMPAFPIFFAVTPVSVLLGLAIFALSLGGTGLVFLQHYEEFLRL 263 >UniRef50_A1T0L3 Flagellar biosynthetic protein fliR n=4 Tax=Gammaproteobacteria RepID=A1T0L3_PSYIN Length = 259 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 135/250 (54%), Gaps = 2/250 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PA 60 + ++ + WL L++WP +R+ + API + SVP +V+L LA+++ +AP + P Sbjct: 1 MSISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQ 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + FS A+ L+V Q+L G+ GF Q F T G+ I +QMGL+ A DPA+ + Sbjct: 61 PAIDPFSLQAIILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ ++ R+ LLFL F+GHL +++L+V++F PI + + + + +F Sbjct: 121 SVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPI-KQGFSLGSLALIISMMVWMF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +A+P I +L N + G +N+ AP L++F +GFP+T+ +G+ + I Sbjct: 180 ASAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIY 239 Query: 241 EHLFSEIFNL 250 + + Sbjct: 240 FEILMQAIKF 249 >UniRef50_C4XT80 Flagellar biosynthetic protein fliR n=2 Tax=Desulfovibrio RepID=C4XT80_DESMR Length = 259 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 2/249 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSF 68 + + + +R+ ++ P +P VK ++++ A+ P L +P + Sbjct: 9 AMVFSFLLTFMRLSVVVFMLPFYGATLIPNVVKASFCLVLSMALWPRLAFAGTALPASPW 68 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + + ++LIG+ L ++ F+A + AG I+G MG S VDP + + L + Sbjct: 69 TIGLMFLGEVLIGLMLDILVRLLFSAAQAAGAIMGFSMGFSLMNSVDPMTGASESGLGHL 128 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 M +A +LFL NGHL+L+S L +F +P GG +N+ L +F+ + +A Sbjct: 129 MSQVATMLFLCLNGHLFLLSALAQSFEMVPPGGLLINAAVGEHLIVFTGQLFVMAIKIAA 188 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ + ++LAL L+ R APQ+++ IGFPL ++VG M + + E+ ++ Sbjct: 189 PILASIFLVDLALALVARAAPQMNVLFIGFPLKVSVGFLFMTMVFAAMTVVIENFLLDLE 248 Query: 249 NLLADIISE 257 + ++ Sbjct: 249 PMFRLVLKA 257 >UniRef50_C1ZEF5 Flagellar biosynthesis pathway, component FliR n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEF5_PLALI Length = 334 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 3/199 (1%) Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P + + + +++IG+ LG +Q A ++ AG+II Q G +P + Sbjct: 125 PTPPENLGQLVLVLLGELVIGLFLGLGVQMVLAGLQMAGQIIDQQGGFGLGEVFNPDLQM 184 Query: 121 NMPVLARIMDMLALLLFLTF---NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 N +++ L ++FL GHL ++ +V++F ++P+G L Sbjct: 185 NASQSGQLLFWLGTVIFLVLEPLGGHLVMLKSMVESFQSIPVGRAFWEPGTVELLNNLMQ 244 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 F + A P++ ++ ++ A+G L+ PQ++I +GF L V + L+ L Sbjct: 245 ASFSLAIRFAAPIMLVMCLVDAAIGFLSHTVPQINIQAVGFSLKAMVSLLLLITLFSTSP 304 Query: 238 PFCEHLFSEIFNLLADIIS 256 + F E F +L +S Sbjct: 305 AVIVNAFQETFFVLRQGLS 323 Score = 43.2 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 ++ L+R+ L T PI +VP +++ L ++ + PS+ FS Sbjct: 17 QFQIFLLVLVRLSGLALTGPIFGAPAVPTNIRVLLIFVLALLVTPSIGHQAAQGFSL 73 >UniRef50_Q8KA35 Flagellar biosynthetic protein fliR n=4 Tax=Buchnera aphidicola RepID=FLIR_BUCAP Length = 258 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 111/251 (44%), Positives = 166/251 (66%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML S ++ +FWPL+R+LA STAPI ++++V K+VK+ L+ +I F I P LP Sbjct: 1 MLTFNSFNLAILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPK 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +V +FS L+L QQILIGIALG T QF FAA +GEII LQ+GLSFA F + ++ Sbjct: 61 VNVELFSIIGLFLLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYI 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +++R +++L LL FLT N HL+L+ +L+D+F+ +P+ L++N F K S IF Sbjct: 121 GTSLISRWLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LNG+M ALP++ L L + +LNR++PQ+SIF IGFPL L +GI ++ LM + PF Sbjct: 181 LNGVMFALPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFF 240 Query: 241 EHLFSEIFNLL 251 + L +++ + + Sbjct: 241 KSLVNQLISFI 251 >UniRef50_D1R8P1 Putative type III secretion inner membrane protein SctT n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P1_9CHLA Length = 285 Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 8/255 (3%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFA 70 L ++ L R+ +I+ +P L R +P VK+ LA+ + P L F+F A Sbjct: 27 LTIFLLFLARMFPIIAQSPFLGARVLPHPVKVSLAISLFVIFFPQMLLLTTTPIGFNFNA 86 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L L ++ILIG LGF + F+ V+ AG II Q G + DP + +++ Sbjct: 87 LLLLFKEILIGFILGFIISIPFSIVQNAGMIIDHQRGGASLMVNDPTIQNQSSPVGTLLN 146 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN------SNAFLALTKAGSLIFLNGL 184 M+ + LF + I + ++ +P S + + + + + Sbjct: 147 MVLIFLFWVVDIPFLFIDAIFTSYEIVPPDQFINPNFFDAASPFRKTQIELLNKVMVVSI 206 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 LA P + +L ++ LG++NR+APQ+ I +G PL +G+ ++ L+ Sbjct: 207 QLATPALLAILMTDVFLGIVNRLAPQVQITFLGMPLKSLLGLGVICFGWNLLTTQMVKDS 266 Query: 245 SEIFNLLADIISELP 259 N + D+ + Sbjct: 267 YVWLNSINDVFKLMK 281 >UniRef50_C2KYZ8 Possible flagellar biosynthesis protein FliR n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ8_9FIRM Length = 250 Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 3/249 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFA 70 L L+ + ++R+ I+ P+ P+R + L M++ + + +P Sbjct: 2 LVLFSFIVMRMTGAIAFNPVFGRTDYPRRARAALIFMLSAICYVHIGGELHHMPGSILEY 61 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 ++ ++++ +G LGF M+ AF +R A I+ MGL+ A DP S V + Sbjct: 62 GFMLLKELFVGFCLGFAMELAFTCLRFATSIMDFSMGLNMAQVFDPQSGSQATVSTGLFY 121 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL-NSNAFLALTKAGSLIFLNGLMLALP 189 +LLF + +GHL + LL T T P GG + + GL LA P Sbjct: 122 GFMMLLFFSMDGHLRFLELLFQTIDTHPFGGISIKLLLMPKLMLSLFVASMKMGLELAFP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 ++ L L +ALG+L R+ PQ++IF + F L + +G S++ L+ I + + F Sbjct: 182 IMGLELMSEIALGILMRIIPQINIFAVNFQLKIILGFSMLYFLLIPITDKMKDFIAFAFE 241 Query: 250 LLADIISEL 258 L ++ L Sbjct: 242 SLNKVMGLL 250 >UniRef50_A0RQU4 Flagellar biosynthetic protein fliR n=23 Tax=Campylobacter RepID=A0RQU4_CAMFF Length = 257 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 121/244 (49%), Gaps = 2/244 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFSFFA 70 + +F L+R AL+ P + +P +K L+ M + P P + + Sbjct: 12 VVTFFLLLVRTGALMVFFPFFNHMQIPVIIKAVLSFMFAIFLFPLAHAPVGLENLSVEYL 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + +++ G+ G + F A++ AG I + MG S A+ +DP S +NMP+++ +++ Sbjct: 72 ILETFSELMFGMCAGVLLMLVFGALQLAGGQISMIMGFSMASVIDPQSGVNMPLISNMLN 131 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + LL FL F+GH ++ + + +P+GG + N K +FL G +++ P+ Sbjct: 132 FIVLLAFLLFDGHHIVLQFIAYSLQFIPLGGFYPDENIVKYTAKGVINLFLFGFIISFPI 191 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + L L +L G+L + PQ ++ V+GFP+ + + ++ A++ + L ++ N Sbjct: 192 LALSLLADLIFGMLMKTMPQFNLLVVGFPIKIAIAFVVIMAIISAMVKLFTSLMMQVLND 251 Query: 251 LADI 254 L + Sbjct: 252 LPGL 255 >UniRef50_Q2SH54 Type III secretory pathway, component EscT n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH54_HAHCH Length = 261 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 5/257 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVP-KRVKLGLAMMITFAIAPSLPA--NDV 63 E L ++F R+LA+ P LS++S+ ++ G+A + P + + Sbjct: 4 ELISHTLFVFFMSSARMLAMFMMLPFLSKQSLGGAMIRNGVAASFSLITYPLVEHGLDAQ 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 + L + V+++ IG+A+GF + F A+ + G I Q G + A+ ++P S Sbjct: 64 TLDGLHLLLIIVKEVGIGLAMGFVLVMPFWAIESVGFFIDNQRGATMASALNPLSGSQTS 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFL 181 L ++ + LF L ++ L ++ P+ + + Sbjct: 124 PLGILLTQSLVTLFFISGTFLLMLYALYKSYSVWPVFEFLPSFPVSGPAFFLAQLDTMMR 183 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 ++L P++ ++ L L++R APQL++F++ PL VG++L+ + + Sbjct: 184 LTVLLGAPVVIVMFLTEFGLALISRFAPQLNVFILAMPLKSAVGLALLCVYAGFVIRYFS 243 Query: 242 HLFSEIFNLLADIISEL 258 L ++I LL + + L Sbjct: 244 ELLADIDGLLQPLFNLL 260 >UniRef50_D2TZ37 Type III secretion apparatus protein SpaR,YscT,HrcT n=1 Tax=Arsenophonus nasoniae RepID=D2TZ37_9ENTR Length = 256 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 2/239 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 ++L+ R+ + S P LS + +K L++ I + P + S Sbjct: 11 IYNFLSHLVIIASRIFPIFSIIPFLSNNILSPTIKFPLSLFIAMGVWPYDAYELPQLESM 70 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L + +++++IG+ + + F ++ G II Q G + ++ +DP + ++ LA Sbjct: 71 GYLVILLKEVIIGLMIALFISLPFCVLQITGNIIDNQRGATLSSSIDPINGVDTSELANF 130 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 ++ A+ LFL +G + + + ++ + + + S +MLA Sbjct: 131 FNLFAVTLFLANDGVITTLEIYHHSYRLWLP--FSMKFPSISNILTFISYAISKAVMLAS 188 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PLI + L + LGLL R APQL+ F I + + +++ + EI Sbjct: 189 PLIIIFLVTEIMLGLLGRYAPQLNPFSIALTVKSLICFTILMIYFSSSFSETVLIMQEI 247 >UniRef50_C8PRD8 Flagellar biosynthetic protein fliR n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRD8_9SPIO Length = 266 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 129/259 (49%), Gaps = 4/259 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M L L+F +R+ A+IST P+LS R+VP+ K+ LA +I F + P Sbjct: 1 MDPNPFSFLLVKAPLFFLVCVRIFAMISTTPLLSTRAVPRIAKISLAGLIGFLVMPVAYG 60 Query: 61 N--DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + DV F+ L V + L+G+ GF + FA+ TAG+ QMG + D + Sbjct: 61 SPLDVQGFNLDYALLVVGEALLGVLTGFFISIIFASFSTAGQFFSYQMGFGVSEVYDALA 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHL-WLISLLVDTFHTL-PIGGEPLNSNAFLALTKAG 176 + P++ + ++ +A+L+FL G + ++ +F ++ L Sbjct: 121 QIENPLMGQFLNFIAVLIFLQIKGFQTLFLGGVLRSFQSINCFMFLEKRELVASFLVTNL 180 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 +FLN +M+A+P++ L +++++GLL++ APQ+++ GFP+T+ + L+ +P + Sbjct: 181 GSLFLNAMMIAMPVMGTLFLVHVSMGLLSKAAPQMNLLSEGFPITILLTFFLLTVSLPFM 240 Query: 237 APFCEHLFSEIFNLLADII 255 A F + F ++ Sbjct: 241 ANFFIRIMENGFAAFESLL 259 >UniRef50_C4K6D9 Type III needle complex export protein n=2 Tax=Candidatus Hamiltonella defensa RepID=C4K6D9_HAMD5 Length = 254 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 3/238 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ T +L+ L + + R++ P S + ++L + M++ F++ P Sbjct: 2 MIDFT-NHFLNELIVVLFASARLMPAFFLLPFFSNNVLTGSLRLPITMLVAFSLWPYQEK 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P +F L L +++LIG+ L F + + F + G II Q G + ++ +DP S + Sbjct: 61 VLPPFETFLYLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + L+ ++ A +FL G + ++ + AF + + + Sbjct: 121 DTSELSNFFNLFAAAVFLQGGGMTLFLESYHQSYQICSP--LRDCTFAFSPIFAILTKLM 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 L+LA P+I +LL LGLL+R APQL+ F I + + ++ P Sbjct: 179 SKSLILASPVIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIP 236 >UniRef50_B6IQA3 Flagellar biosynthesis protein FliR n=1 Tax=Rhodospirillum centenum SW RepID=B6IQA3_RHOCS Length = 251 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 2/231 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV--PVFSFFALWLA 74 L+RV A +S P E +VP R ++ A+ + A+A ++P P L Sbjct: 15 LLVLVRVGAALSMLPGFGEMAVPMRTRMAAALALALALAAAVPGLPAVPPAGPGELLRHI 74 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 V + + G +G + FAA++ AG+II LS + VL + M L Sbjct: 75 VGEAMAGAVIGIGARILFAALQIAGQIIAQSASLSNIFALPGTGFEGGSVLGAYLMMGGL 134 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 +L + H +I L+D++ +P P + + +L F + + P + L Sbjct: 135 VLVFVTDLHHAMIRALLDSYQLMPAATIPDPRSLGKLTAETVNLSFRLAVQFSAPFLLLG 194 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L N+ LGL+NR P ++F +G P+++ G ++A + I F Sbjct: 195 LAYNVGLGLVNRAMPHFAVFFVGLPVSILGGFIVLALVAAAILGGFLDAFG 245 >UniRef50_Q3ADD0 Flagellar biosynthetic protein FliR n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADD0_CARHZ Length = 255 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAP-ILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFS 67 ++ ++ R+ +P I+ R VP VK +++ + + P++ + Sbjct: 1 MTQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQ 60 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L + + LIG+ LGF AG+ + L GLS AT DP + N ++A Sbjct: 61 RNFFLLLIGESLIGLLLGFVTLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMAN 120 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + + +L + NGH L++ L +F +P G L+ L K +L+ L + +A Sbjct: 121 FIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIA 180 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P + ++L +LALG+L R APQ+++F++ F L + + I + L+P IA F + Sbjct: 181 IPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELM 240 Query: 248 FNLLADIISEL 258 L II + Sbjct: 241 EKNLLAIIRGI 251 >UniRef50_A0L3J6 Flagellar biosynthetic protein fliR n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3J6_MAGSM Length = 266 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWLA 74 + R+ L AP S PKR+++ L + IT I P +P ++ Sbjct: 21 VLIMSRLSGLFLAAPFFSRNVGPKRIRVILLLWITIVIYPIVPPWPGEGNGEVIRMVFTG 80 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 V + +GI +G + +V+ AG +IG +MGLS A +DP S + VLA ++ + L Sbjct: 81 VVEFSMGIMIGMIAHWVLVSVQIAGTMIGFEMGLSMAMVMDPTSGVQEGVLANLLYLFGL 140 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 +LFL NGH WL+ L +F ++P+G P + + +F L+LA P++ Sbjct: 141 MLFLLLNGHHWLLEGLARSFVSMPLGSPLPHGEPMITIVLQGIVHMFELALLLAAPVVAA 200 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 L L +GL+NR +PQ+ +F + P+ +G +M + + NL Sbjct: 201 AKLLYLGMGLINRASPQIQVFFLAMPVAQLMGFLIMGLTLSIFGQRLTREMELFINLAFR 260 Query: 254 IISELP 259 ++ P Sbjct: 261 VVGLTP 266 >UniRef50_C6QF51 Type III secretion system inner membrane R protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QF51_9RHIZ Length = 254 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 3/251 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 SE L + RV A P S +P +++L +A+ I+ AI P + + PV Sbjct: 2 SELTQQTLLVPLIVFCRVGACFMVLPGFSSDRIPVQLRLFVAIAISLAIMPIVYDDVRPV 61 Query: 66 FSFFA---LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + A + + V + L G+ LGF ++ F A+ A + G A + Sbjct: 62 AAGPAEGLVSIIVTESLAGLFLGFIVRIFFLALEFAAIAMANLAGYGSAFSHAIEGNDPS 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 + + + A+++F + H+ +I +L +++ L +G E + F Sbjct: 122 TPYSVFVTLPAVVMFFVADLHIAIIRMLHNSYAALKVGSEFAAPPNLSMIVSTFGSAFKL 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 L L+ L+ + +NLA G LN+M PQ+ + + P + G+ ++ + I Sbjct: 182 TLQLSAALVVYSVMVNLAFGFLNKMIPQIPSYFVSTPFVVLGGLIILLQIDSGIISIFSS 241 Query: 243 LFSEIFNLLAD 253 L + L Sbjct: 242 LVMQAIATLGQ 252 >UniRef50_D2LCZ4 Flagellar biosynthesis protein FliR n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCZ4_RHOVA Length = 255 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 101/255 (39%), Gaps = 4/255 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + + F L R+ + P + VP RV+L + + I+ A+A +L Sbjct: 1 MISQALDALPGGVLSIFLVLCRIGGCLMVLPAIGGARVPVRVRLMVCLAISVAVAFALGN 60 Query: 61 NDVPVFSFFA----LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 + S + + L + + G+ +G ++ FA+ + +GL+ Sbjct: 61 FESARESLSSTPSLVSLVLVETAKGLVIGIMIRLFFASFKFLAVAGSAALGLAMPVNAVE 120 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 P LA + + A LFL + HL ++ L+ ++ LPIG + + + Sbjct: 121 EDGETTPPLAEFVSLTAAFLFLATDQHLEVLKALLQSYTVLPIGTGIGLAPSLSGVVDTL 180 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 L L + PL+ +NL G+LNR+APQ + + P + G+ + + Sbjct: 181 RDACLVSLQVVAPLLVFAFLVNLLFGVLNRIAPQTPAYFLSMPFVIGGGMLIFYFTAGEM 240 Query: 237 APFCEHLFSEIFNLL 251 F+ + Sbjct: 241 FLLFMGAFASWLQEI 255 >UniRef50_A9BHY5 Flagellar biosynthetic protein fliR n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHY5_PETMO Length = 257 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 126/248 (50%), Gaps = 2/248 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPV 65 E L +YF+ RV + P S VP +K+ + + I++ + + + Sbjct: 4 ENLTYQLWVYFFIFARVAGITFFIPFFSTTFVPVHIKVFITLFISYLVLFEVNGTFPINS 63 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 ++ + + G ++G F A + AGE IG+QMG + A DP + + ++ Sbjct: 64 SPLVIIFYLLMNFVFGSSVGLIANILFYAFQFAGETIGIQMGFAMANVFDPVTSDEVSLV 123 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + + + ++LLF F G L L S+++D+F+ +P+ L + F+ ++ +F GL Sbjct: 124 SELSFLFSMLLFFIFKGPLILYSIIIDSFNKVPV-VFTLAPDGFMVFSQKLFDVFTIGLQ 182 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L++P I ++ L +ALG+++R+ PQ+++F++G PL + VG L ++ + LF Sbjct: 183 LSMPFIAFMILLKVALGIVSRLIPQVNVFMVGIPLEILVGFLLFLGVILIWEDQFTTLFF 242 Query: 246 EIFNLLAD 253 ++ + + Sbjct: 243 QLMEWIKN 250 >UniRef50_B8DMR4 Type III secretion protein SpaR/YscT/HrcT n=5 Tax=Desulfovibrio RepID=B8DMR4_DESVM Length = 278 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 107/260 (41%), Gaps = 9/260 (3%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS----LPANDVP 64 L + R+ + AP L+ V ++++ L + P LP V Sbjct: 19 LFDHLLAVVAGMPRLFMVAQVAPFLAGSVVTGQLRMVLVFACYLPVHPVILGQLPKGSVF 78 Query: 65 VFSFFALW--LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + + L +++ L+G+ LG AF V++AG +I Q G S A DP S Sbjct: 79 DLTLLGHYGALVLKESLMGLVLGLLAGIAFWTVQSAGFLIDNQRGASMAEESDPMSGEQT 138 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNS---NAFLALTKAGSLI 179 + + LF T L + LL ++ P+ + L + + Sbjct: 139 TPTGAFLLQTMMYLFYTSGAFLAFLGLLYASYEIWPVPSLAPLAWSIEVPLLFAGRVAWL 198 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 + ++LA PL+ L +++LGL+NR A QL+++V+ P+ V L+ +A Sbjct: 199 MSHMVLLAGPLVVACLLADISLGLVNRFASQLNVYVLAMPVKSAVASLLLVLYFGALAAK 258 Query: 240 CEHLFSEIFNLLADIISELP 259 LF+EI L + LP Sbjct: 259 TPDLFAEIAADLQRLQGLLP 278 >UniRef50_D1AZH9 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZH9_SULD5 Length = 257 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 119/251 (47%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M + + L+F R+ + + P S ++P +K + + + P L Sbjct: 1 MESLVKLFGEHHVILFFLLFARLSGVFAFFPFFSHANIPLSIKTSITFFMVVFLFPLLSP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V V ++LIG G + A + ++ AG I MG + A+ VDP + Sbjct: 61 LHVTPTLLNLTLAIVSELLIGFIAGLFLTIALSILQMAGMQISFVMGFTMASVVDPQTST 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++PVL++I ++ L++ L FNGH ++ +VD+ LP+G + + KA + +F Sbjct: 121 SIPVLSQIFSLIGLMIVLAFNGHHQMLLFIVDSLSLLPLGTFYPEMSVVGYILKATTGMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G +L+ P++ L +++ G+L + PQ ++ V+GFP+ + V + ++ + Sbjct: 181 VYGFILSFPVLAFSLLMDVVFGMLMKTMPQFNLLVVGFPIRIAVSLVVIIVTLASTMLLF 240 Query: 241 EHLFSEIFNLL 251 + F E N L Sbjct: 241 KREFMEAINQL 251 >UniRef50_A5VVZ1 Flagellar biosynthetic protein fliR n=3 Tax=Brucella RepID=A5VVZ1_BRUO2 Length = 239 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 4/219 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + VT + R+ A + P +S +P +V+L +A+ +FA+ P + Sbjct: 1 MPVTQLPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQR 60 Query: 62 DVPVF----SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 V + L V ++ IG +G F A + ++ + +G S + Sbjct: 61 IVTAVDAGQPWTLFRLMVGEMFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSIT 120 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + LA I+ AL LF + HL + L++++ +P+ G A + T A S Sbjct: 121 ENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALS 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVI 216 FL L +A P I + +N A+GL+N++ P + ++ I Sbjct: 181 AAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFI 219 >UniRef50_O67773 Flagellar biosynthetic protein fliR n=1 Tax=Aquifex aeolicus RepID=FLIR_AQUAE Length = 258 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 2/250 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF- 69 +L R+++ + T P +P ++L LA ++FA+ + V V +F Sbjct: 8 EFLITLLLSYFRIVSFLFTFPFYGSFLIPNTIRLYLAFALSFAVLSFINITPVKVNTFVE 67 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L A+ ++L G + G ++ F A+ AGE+I L GL F P M + + Sbjct: 68 FLVYALNELLFGFSAGLILRLLFDALIIAGELIALHTGLGFLQMFIPGM-TQMSLFSGFF 126 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 + L+FL+ G ++I L ++F LP+G + F G+ +A+P Sbjct: 127 TLYGTLIFLSLGGGEFIILGLAESFKRLPVGSFNIFYLNPEVFLNFFYESFRLGVKIAMP 186 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 LI L LNL L ++NR PQ+++F++G PL +++G+ ++ +PLI + F + F Sbjct: 187 LILTALILNLVLAVVNRFIPQMNVFMVGLPLQVSIGLIILLLSLPLITITMSNHFQDFFK 246 Query: 250 LLADIISELP 259 + I Sbjct: 247 VFEYFIQSFK 256 >UniRef50_Q1D9K4 FliR/MopE/SpaR family protein n=2 Tax=Cystobacterineae RepID=Q1D9K4_MYXXD Length = 272 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 113/260 (43%), Gaps = 6/260 (2%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--D 62 T + + + RV+ ++ +P L VP +K+G+ + ++ + P + + Sbjct: 12 TRANVSAVIFTVALVMCRVMPVLIFSPFLGGEVVPTELKMGIGLTLSIVLYPLIAGSVTS 71 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 +P+ + + L +++ +G + F + F A R AG ++ G + A P + Sbjct: 72 IPLSALPYIALMAKEVFVGFTIAFVVNTLFEAARVAGNLVDTMSGSNNAQLYVPQLGQQV 131 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 + + LA++LFLT NGH +I L D+ +P+ G P + +F + Sbjct: 132 TLFSSFKVQLAVVLFLTLNGHHLVIEALADSLVAVPLDGFPRFHDGPWPFFDLMIRVFAD 191 Query: 183 GLMLALPLITLL----LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 L ++L L ++ALG +NR+APQ+ +F I + V + L+ ++ + Sbjct: 192 LLRVSLALAAPAMLATFLTDVALGAINRVAPQIQVFFISMSVKPLVSVLLVFLVLGALMD 251 Query: 239 FCEHLFSEIFNLLADIISEL 258 + + L + L Sbjct: 252 RMQGEMVVMLRTLNQALRLL 271 >UniRef50_B6IS88 Flagellar biosynthetic protein fliR n=1 Tax=Rhodospirillum centenum SW RepID=B6IS88_RHOCS Length = 254 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 2/236 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSFFA 70 + + +R+ A P + E+++ R++L A+++ + P + P Sbjct: 11 VFAFLLVFVRLAAAFMIIPAIGEQAISARIRLLFALVVAAVVTPVVRQYLPPEPSAPAEL 70 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L V +IL+G+ +G + A+ T G +I Q+GL+ A +PA + ++ Sbjct: 71 AALVVSEILVGLFIGTLARVLLTALETGGFLIANQLGLAAAQAFNPALAAPGNPIGALLG 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + A+++ + H LI +VD++ +A L + + F G+ LA+P Sbjct: 131 IGAVVVIFATDLHHMLILAVVDSYTLFSPADGLPLGDATEHLAQTVNTSFAIGVQLAVPF 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 + L LGL+ R+ PQ+ +F +G P+ + +G +++ + + F F + Sbjct: 191 FVIGFLFYLGLGLVARLVPQVQVFFVGLPIQIAIGSLMLSLSLSALMLFWLTHFED 246 >UniRef50_Q6MES5 Putative type III secretion inner membrane protein SctT n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MES5_PARUW Length = 280 Score = 120 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 8/244 (3%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA--VQQIL 79 R+L +I+ AP R +P VK+ LA+ P L +F L + +++ Sbjct: 32 RMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNLLLVLYFFKELF 91 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G+ LG+ + F V+ G +I Q G S DP L + +++ + LF Sbjct: 92 VGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFFM 151 Query: 140 FNGHLWLISLLVDTFHTLPIGGEP------LNSNAFLALTKAGSLIFLNGLMLALPLITL 193 +G ++ ++ ++ LP +NSN + + K + + LA P + + Sbjct: 152 IDGPFMILDIISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALIM 211 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 +L + LG+ NR+APQ+ I +G PL + ++++ L N L Sbjct: 212 ILMTDFFLGIANRLAPQVQITFLGMPLKSLLALAIVFFGWQLFLKQIVDESYVWVNYLYK 271 Query: 254 IISE 257 ++ + Sbjct: 272 LLDQ 275 >UniRef50_Q3JKQ7 SctT n=58 Tax=Proteobacteria RepID=Q3JKQ7_BURP1 Length = 531 Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 2/234 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 ++++ ++ L R+L L++ P ++ + ++ G A + +A A + Sbjct: 214 DEFIRFIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQLH 273 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 F + V++ +IG+ LG F A G + G + +P+S ++A Sbjct: 274 GAFLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMA 333 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGSLIFLNGL- 184 + L + F G +L+ L ++F P+G P+ + +A + +N + Sbjct: 334 TLFGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIA 393 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +A P++ +LL ++L L + R A +L + + PL + + ++A L Sbjct: 394 RIATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVS 447 >UniRef50_B5JK51 Bacterial export protein, family 1 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK51_9BACT Length = 256 Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 1/247 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L + L+ L RVL L AP+ S +S+P K+ LA + P + S + Sbjct: 4 LEDITLFLLILTRVLGLFLAAPVFSHKSIPVIAKVTLAAAFAMMVFPMVDHEVANPASIW 63 Query: 70 ALWL-AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 +L L +++ +G+ +G ++ F + A +I +++GL DP S + Sbjct: 64 SLTLWFAKELTVGLMMGIAIRMVFFVLDFASHVITVEIGLQPGPAFDPGSSSSQGNPLGT 123 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + L+ L ++ + +F PIG LNS A + + IF G+++ Sbjct: 124 IIYFLGLMLLLSGSEYNMLRAFMRSFEIAPIGFFGLNSFAADFIILKTADIFRIGILMGA 183 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ + +NL L ++ P+L++F++ F + +G +++ + L+A + E Sbjct: 184 PIVAVNFLVNLVFATLGKVVPKLNVFILSFSARIFLGTTVLTLTVGLLAHYAMAYIEETP 243 Query: 249 NLLADII 255 ++ I Sbjct: 244 EMMLRFI 250 >UniRef50_A6CEQ7 Flagellar biosynthetic protein fliR/B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEQ7_9PLAN Length = 329 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 119/312 (38%), Gaps = 60/312 (19%) Query: 2 LQVTSEQWLSW----LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS 57 LQ+ Q L W + L+R+ L+ P+ + P +++ L + ++ I P+ Sbjct: 14 LQLAPGQLLQWAMLQFYAFTLVLVRISGLMIIGPVFGQPIFPTNIRILLILSLSLLITPT 73 Query: 58 LPAND-----------------------------------------------------VP 64 L +P Sbjct: 74 LHDQTTVGFYQLDSNQDQRLSQDEVPEHLQDRFEDLVVTAGRQATRELTVNDYRFVTRMP 133 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 W + ++ +G +LG + +++ AG++I Q G++ +P +N + Sbjct: 134 NSLLDYAWSILGELTLGFSLGLGIYIILLSLQMAGQMIDQQAGMALGEVFNPGFDMNASL 193 Query: 125 LARIMDMLALLLFLTF---NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 + + + + +FL NGHL ++S L+DTF P+G +++N L + Sbjct: 194 SGQYLYFIGISVFLLMEPVNGHLLMLSSLIDTFQVFPVGEGIVSTNTLDLLQTLMHQSLV 253 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + +A PL+ + +++++G L PQ+++ VIGFP+ + + ++ + A Sbjct: 254 LSIKVAAPLLAISALISISMGYLGHTVPQINVLVIGFPIRAMISLIVLVFTLSGAADIVV 313 Query: 242 HLFSEIFNLLAD 253 + L+ Sbjct: 314 ESIPSAIDQLSR 325 >UniRef50_C6XF32 Flagellar biosynthesis protein FliR n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF32_LIBAP Length = 248 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 3/235 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSFF 69 + F + RV + I P LS +P +V+L AM + + P L V + Sbjct: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L + ++ +G G ++ ++ G +I +GL+ T + + L L ++ Sbjct: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 ++ LL + H + LV ++ T+PIG E N F + F+ L L+ P Sbjct: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F Sbjct: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 >UniRef50_C5EFG8 Bifunctional flagellar biosynthesis protein FliR/FlhB n=2 Tax=Clostridiales RepID=C5EFG8_9FIRM Length = 261 Score = 119 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 117/254 (46%), Gaps = 4/254 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 L + +++ R+ +I P+ + + VP V+ GLA+ ++ IAP+ A V Sbjct: 2 DSSVLEYFDIFLLVFARMGGMIFINPVFARKGVPLMVRTGLALALSLLIAPAARAGGQAV 61 Query: 66 FSFFALWLA---VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + +A V+++++G+ +G Q F + AG+++ GL+ +DP + + Sbjct: 62 VLYSTFDMAEALVRELILGLGIGCVFQLFFYMLYVAGDLLDTAFGLAMGKVMDPMNGVQT 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFL 181 +L + +++ L F HL + L T+ +P+G G N + + +FL Sbjct: 122 AILGQFVNIFFFLYFFATGCHLLTVRLFAYTYEVIPVGAGVFFVRNVLWYIITMSATVFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + LALP + L + +G+L ++ PQ+ +FVI + +GI LM + F + Sbjct: 182 MVIKLALPFVAAEFVLEMTMGVLMKLIPQIHVFVINIQCKILLGILLMILFAYPMGAFMD 241 Query: 242 HLFSEIFNLLADII 255 + +II Sbjct: 242 GYADAMMKEAQNII 255 >UniRef50_Q2SC30 Type III secretory pathway, component EscT n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SC30_HAHCH Length = 262 Score = 119 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 5/247 (2%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKR-VKLGLAMMITFAIAPSLPANDVP--VFSFF 69 L L+ + + R+LA +S P LS+ ++ G+ + ++ + P + P + F Sbjct: 10 LTLFMFTVPRLLAAMSVMPFLSKSFFGGTLIRNGVVLSLSLFLFPIVDEGYKPETMAPFM 69 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + +++++IG LG+ F A+ G I Q G + A+ ++P + + + Sbjct: 70 YALIILKEVIIGFCLGWLAALPFWALEAVGFFIDNQRGSTMASAMNPLTGSQASPVGILF 129 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLNGLMLA 187 LF L L+ + ++H PI + +A ++ A Sbjct: 130 VQTFTTLFFLGGNFLTLMGAIYASYHAWPIFSFFPRIELSAAGFFFAQLDYFMSIVVLFA 189 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PLI + LGL++R APQL++F + P+ V + ++ + ++ + + Sbjct: 190 APLIACMFLAEFGLGLVSRFAPQLNVFFLSMPIKSLVCMVMLTFYVGVLMRIFDERYLRT 249 Query: 248 FNLLADI 254 F+L + Sbjct: 250 FDLFKQL 256 >UniRef50_Q21AA3 Type III secretion system inner membrane R protein n=3 Tax=Bradyrhizobiaceae RepID=Q21AA3_RHOPB Length = 248 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 6/212 (2%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA-- 70 + + F RV + AP S ++P +V+L LA+ +T ++P L A P A Sbjct: 9 VLVVFLIFCRVGTCMMVAPGYSRSNIPVQVRLFLALSVTLMLSPLLEATVRPALEGAAAP 68 Query: 71 --LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L L ++++G+ +G T + FAA+ T + +GL+ A VD ++P L + Sbjct: 69 AILGLIWSELVVGLMIGLTARVFFAALETLATFVASAIGLNLAGTVD--DGEHVPALVPL 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + + A +LF H L+ L+ ++ + L S F L +A Sbjct: 127 ITVSATVLFFMTEQHWQLLRGLLGSYRIWLPATGVGIGDGVAQLVDHLSQAFTLALRVAS 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPL 220 P + + +NLA+GL N++ P + ++ I P Sbjct: 187 PFVIYSVIVNLAIGLANKLTPSIPVYFISLPF 218 >UniRef50_Q1GCD0 Flagellar biosynthetic protein fliR n=8 Tax=Rhodobacterales RepID=Q1GCD0_SILST Length = 259 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 6/239 (2%) Query: 8 QWLSWLNLYFW----PLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 + ++ FW LR+ A+ S E+ +P +++L ++ T +AP+LP + Sbjct: 9 ELMALFGAGFWHAAIVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPM 68 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P L ++++G+ALG ++ ++TAG I LS + A MP Sbjct: 69 PQTVMQYAGLMATEVVVGLALGLGLRMFMHMLQTAGSIAAQCTSLS--QVLGGAGADPMP 126 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 L ++ + + + + + H+ L++ ++ P+G P S S F Sbjct: 127 ALGAVLWISGIAVAVMLDFHIHAAQLMIRSYDLFPVGIFPSASGLSEWGVHRVSATFAQA 186 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 LA P + + NL LG++NR QL + +G P+ G++++ P++ H Sbjct: 187 FTLAAPFLITAVVYNLTLGVINRAMTQLMVVFVGAPVITFGGLAILMIGAPMMLEVWGH 245 >UniRef50_Q9KKH0 YsaT n=8 Tax=Enterobacteriaceae RepID=Q9KKH0_YEREN Length = 266 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 96/226 (42%), Gaps = 2/226 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVP-KRVKLGLAMMITFAIAPSLPANDVPVFS 67 + + L R+ + P LS + + +K +A+ + + P ++ Sbjct: 16 FQTGLMTLALAWARIAPVFFFLPFLSSKLLNSGMIKNCVAVFLALGMWPFFSTYELNWEE 75 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + ++ IG+ L F + F GE+I Q G + + +DPA+ + ++ Sbjct: 76 TSLGEMILYELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGVESSEMSV 135 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++ + +++FLT G L +++ LP + ++ L + + + + ++LA Sbjct: 136 LVSHIVVMIFLTQGGMYQLAQTFAESYRLLPFAAGFSHFDSL-PLGRWLNQLVVQAIVLA 194 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233 P++ L +ALGL +R PQL+ F + + + + Sbjct: 195 APILVTLFITEVALGLYSRFCPQLNAFSLSLTIKSAIAFMVFLLYF 240 >UniRef50_C7C777 Flagellar biosynthetic protein fliR n=8 Tax=Methylobacterium RepID=C7C777_METED Length = 258 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 4/245 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP----SLPANDVP 64 + RV L+ P L E+ + R++L LA+++T + P LP + Sbjct: 9 LPGLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAA 68 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + + L + +ILIG+ LG ++ AA++TAG +I Q+GLS+A VDP Sbjct: 69 LAAPSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAA 128 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + + ML + L L + H + + ++ LP G P ++A A S F + Sbjct: 129 IGNFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALAAFSRSFALAV 188 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ P I + NL LG+L+R+ PQL +F + P ++ +G+ L+ + LI Sbjct: 189 RISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLFLDDL 248 Query: 245 SEIFN 249 Sbjct: 249 GRYLG 253 >UniRef50_Q2SEX2 Flagellar biosynthesis pathway, component FliR n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEX2_HAHCH Length = 226 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 107/224 (47%), Gaps = 3/224 (1%) Query: 37 SVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWLAVQQILIGIALGFTMQFAFAA 94 +P R++ L + + PA V + S ++++G+A+ + AF Sbjct: 4 RLPGRIRFFLVCALALLMVRFSPATGVQLPSSVVDMALACANELVLGLAMALGLHAAFTV 63 Query: 95 VRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTF 154 + AG +I Q G A ++PA++ P++ I+ A +F + + H +I L + Sbjct: 64 FQIAGRLIDFQSGFGAANIMNPATNSAEPLMGTILLFFATFVFFSMDAHHMVIKGLAYSV 123 Query: 155 HTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIF 214 +P G + + F K L+F ++LA P++ +L L++ + ++ R PQ++++ Sbjct: 124 AQVPPGSGLVRMD-FPGAMKQFGLMFSFAMVLAAPVLAVLFLLDVGVAVMARTMPQMNVY 182 Query: 215 VIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 + PL + +GI + A + + P +F+ IF + +++ + Sbjct: 183 FLFLPLKVALGIIVTALSLKYLTPLIGEVFNSIFRYWSGMLTVI 226 >UniRef50_B1ZR30 Type III secretion system inner membrane R protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR30_OPITP Length = 249 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 1/248 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L +L + LR L +I P+++ R +P +LG+ + I +A +P + VP + Sbjct: 3 LGFLVTWMMVFLRTLGVILQLPLVAGRPIPVMARLGICVCIASLLAGVVPESSVPATLWG 62 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L +IL+G+ALGF ++ AFAAV AG I+ ++G++ + P+ A ++ Sbjct: 63 LLAATAGEILVGLALGFMVRLAFAAVEMAGRILSSEIGITMGGGMGVPEPATEPMTA-LI 121 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 A++LF F GHL ++S L +F P G L +A L A S + G+ +A P Sbjct: 122 STFAVVLFFAFGGHLMMLSGLARSFVLAPAGQPMLAPSASDLLINATSHLIEVGVRIAAP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 I + + L +L R+ P++++F++ F + L G +L+A+ LIA + F + Sbjct: 182 FIAMNFLVLLTFSVLGRVLPKMNVFIVSFSMRLIAGFTLLASGGTLIARYLYLEFDDTPV 241 Query: 250 LLADIISE 257 + + + Sbjct: 242 RMLQLFAR 249 >UniRef50_A0RCA1 Flagellar biosynthetic protein n=70 Tax=Bacillus cereus group RepID=A0RCA1_BACAH Length = 253 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 114/233 (48%), Gaps = 1/233 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ 76 F+ R+ + + P S RS+P K+ + ++ +A + + + ++ A Sbjct: 10 FFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSITVADQVDVSHI-KTTWDVAAYAGT 68 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 QI+IG++L ++ + + AG I+ +GLS A+ D + +L+ I D+ L++ Sbjct: 69 QIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFDIFFLII 128 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 F++ G + ++ ++ +F + L ++ +L + + +ALPL+ L Sbjct: 129 FISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPLMGSLFI 188 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +N L L+ + APQL+IF+ F + +T GI +A +P++ +++ + Sbjct: 189 INFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNMTDVLLE 241 >UniRef50_C2KTP9 Flagellar biosynthesis protein FliR n=3 Tax=Mobiluncus RepID=C2KTP9_9ACTO Length = 252 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 3/254 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + L +L + +R + P S R+ R+K L + A + Sbjct: 1 MPIVITIHLGFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQRIGPV 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + F + V Q IG ++ ++ AA++ AG ++ L+ G + A DP + N Sbjct: 61 ---AQTDFFVVECVIQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTN 117 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 R+ ++ A+ L T NG+ LI L +F +P G SN L + + + Sbjct: 118 QATFGRVYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTM 177 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + L +A PL+ +L ++ +GLL ++AP ++ F +GFPL + V A+M ++ Sbjct: 178 SALEIAGPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFFAPAIMVVLPQLVV 237 Query: 242 HLFSEIFNLLADII 255 L +I Sbjct: 238 KLVDVAVKSWTGVI 251 >UniRef50_B6QWX6 Type III secretion apparatus protein SpaR/YscT/HrcT n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QWX6_9RHOB Length = 280 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 94/230 (40%), Gaps = 4/230 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFA 70 + R+ A+ +T+ + + + + + + M+I + P + Sbjct: 15 FLVLLLTFPRIFAVFATSQLFNATLMSRMARNVVVMVIAIPLYPYNLQYVDGFSPTGSMF 74 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + ++ IG +G+T+ AV++AG +I Q G + A+ +DP + + Sbjct: 75 IVYFFKEYAIGFLIGYTISCLLWAVQSAGTLIDNQRGAAVASSIDPMLGNESSPIGDLFS 134 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSLIFLNGLMLAL 188 +L G ++++L+ +++ P+ L + ++A Sbjct: 135 RAFILYLFLTPGFFFILTLVYNSYMIFPVTEFVPVLPEEFPELILSIFDNAMRLMFIMAA 194 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 PL+ L+ AL +++R PQ+ +F++ P+ V + L+ + + P Sbjct: 195 PLVILMFLSEFALAIISRFDPQIQVFILAMPIKSGVAVILLTFYLSFLLP 244 >UniRef50_B7KZ93 Flagellar biosynthesis protein FliR n=7 Tax=Methylobacterium RepID=B7KZ93_METC4 Length = 256 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 4/228 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA----LW 72 F R+ + P S VP +V+L +A ++ A+ P L S A L Sbjct: 18 FLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTKLSGQAPTETLT 77 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + + G+ +G + + T + +G +P + ++ Sbjct: 78 WIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESLIVFT 137 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A+ L + H L LVD++ +P G A + + + F L +A P I Sbjct: 138 AVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAAPFII 197 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +NLA G +N++ P + ++ + P + + L+ L Sbjct: 198 YAVAVNLAAGFVNKLTPTIPVYFVATPFVMFGALLLLYTLSSEFMTQF 245 >UniRef50_A3W5F7 Flagellar biosynthetic protein FliR n=3 Tax=Rhodobacteraceae RepID=A3W5F7_9RHOB Length = 254 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 2/231 (0%) Query: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQ 77 LRV +I P E+SVP R+K+ L T AP++ + + + + Sbjct: 20 LVFLRVAPIIGLLPGFGEQSVPMRIKVVLVFAFTLIAAPAIAPDLPDHVHAPSALTILSE 79 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 L+G+ +G ++ A++ AG I LS + AS MP + ++ + L Sbjct: 80 TLVGLIIGIGLRLFLMALQMAGSIAAQSTSLS--QILGNASLTPMPSIGHLLATGGVALM 137 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 + + H+ + L++ ++ P+ G S + F G MLA P + + + Sbjct: 138 MIMDLHVRVAELMILSYRVFPVQGVFKVSAITQWGVSQIAHAFSLGFMLAAPFVLVSVLY 197 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 NL LG++NR PQ+ + +G P + + ++ + P + F+ Sbjct: 198 NLTLGVINRAMPQMMVAFVGAPAITALALFVLMLVAPALLMAWAQAFAGFI 248 >UniRef50_Q1MQX3 Type III secretion component protein SctT n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQX3_LAWIP Length = 271 Score = 117 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 9/252 (3%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV------PV 65 + R+ +I P + V ++++ + ++P+L A P Sbjct: 15 HFIAFLIGTPRLFMIIQVVPFMGNNIVTGQLRVVVVFSFYLLLSPALVAQLPHIPEVDPS 74 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 L + +++ IG LG+ F + + G I Q G + A DP S L Sbjct: 75 LLPRILAIVIKEGFIGFFLGYLGSMVFWMIESVGLFIDNQRGAAMAAQTDPLSGSQTSPL 134 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNS---NAFLALTKAGSLIFLN 182 + + +F T + ++L+ T+ P S + K + Sbjct: 135 GSFLFQCLVYIFFTSGAFITFLTLIYKTYEFWPPHEFIPMSWKMRLPELIIKQVDWLMAY 194 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 ++LA P+ L +++LGL+NR A QL+++V+ P+ V L+ L+ Sbjct: 195 TMLLAGPIAVACLLTDVSLGLVNRFASQLNVYVLAMPIKSAVAAFLLIFYFKLLLEKATF 254 Query: 243 LFSEIFNLLADI 254 LF +L I Sbjct: 255 LFKPFETVLFQI 266 >UniRef50_UPI00019F17CD type III secretion system EscT protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F17CD Length = 264 Score = 117 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 103/240 (42%), Gaps = 6/240 (2%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVP-KRVKLGLAMMITFAIAPSLPAN----DV 63 + L F +LR L + P+L+ +++ ++ + ++IT P L N Sbjct: 8 LTGIIPLLFIAVLRPLGIFIIMPLLTSKNLAGTMIRNSIIILITIPALPGLKENVFLSQP 67 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 V F+ +++ IG+ +GF F A+ +AG ++ G S +P + Sbjct: 68 HVIDFYFFLALSREVFIGVLIGFVAAIPFWAIDSAGFLLDTMRGSSMGNIYNPTLAESST 127 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP-LNSNAFLALTKAGSLIFLN 182 +L L ++F G LI+ L ++ P G N + + + +++F+ Sbjct: 128 LLGVFFSQLFTVIFFVCGGMNQLITTLYQSYVLFPPGESISFNRHLLDFVVQQWNMLFVL 187 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 L ++P ++L ++ +GLLNR A QL++F + + + + ++ + + Sbjct: 188 FLHFSIPAAAVMLLTDVGMGLLNRSAQQLNVFFLAMSVKSILALIVLMITIAFSLDYVRE 247 >UniRef50_Q16DQ9 Flagellar biosynthetic protein FliR n=5 Tax=Rhodobacteraceae RepID=Q16DQ9_ROSDO Length = 256 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 2/232 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ 76 F RV AL + P E+++ RVKL A+ T +AP+LP P ++ + Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLSARVKLAAALAFTVIVAPALPIIPAPGSIGAVSFVILT 78 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 +++ G+A+G ++ A++TAG I LS + A+ +P + I+ + L L Sbjct: 79 EVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLS--QVLGGAAVDPLPAMGYILVIAGLAL 136 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 + H+ + L++ ++ +P+G ++ T + F LA P + L + Sbjct: 137 AVMAGLHVKVAQLIILSYDFMPVGRFANAADLSEWGTSQVAHAFSLAFTLAAPFVILSVL 196 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 N ALG +NR PQL + +G P+ G++L+ P + Sbjct: 197 YNFALGAINRAMPQLMVAFVGAPVITLGGLALLLISAPYMLTVWLGAMDRYL 248 >UniRef50_P96068 Secretion system apparatus protein ssaT n=29 Tax=Enterobacteriaceae RepID=SSAT_SALTY Length = 259 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 4/218 (1%) Query: 40 KRVKLGLAMMITFAIAPSLPANDVPVF---SFFALWLAVQQILIGIALGFTMQFAFAAVR 96 ++ G+ M +TF I P + + + + L L +++IG ++GF F AV Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVD 96 Query: 97 TAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHT 156 AG ++ G + T + + + ++F G +++++L +++ Sbjct: 97 MAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156 Query: 157 LPIGGEPLNSNAFLALTKA-GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFV 215 LP G L FL +A ++ + +LP I ++ +LALGLLNR A QL++F Sbjct: 157 LPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF 216 Query: 216 IGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 PL + + + P + + L D Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHYLVESDKFYIYLKD 254 >UniRef50_A3WGR2 Flagellar protein FliR n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR2_9SPHN Length = 264 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 1/244 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 L L + +R A + AP++ V + + +A+++ ++ +P Sbjct: 4 LDFGFTGLEEQLWQILFLSIRCGAALLAAPMVGGMVVAPQFRALIAIVLAVFVSTWIPLP 63 Query: 62 DVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +P + SF A+ VQ+++IG ALGF +Q AFA A E I MGL+ AT +DPAS Sbjct: 64 PLPEMMSFAAVLAVVQEVVIGAALGFVLQVAFAVPLIAAEQISGTMGLAIATSIDPASGA 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 L ++ LLF GHL LL++++ LP G + + Sbjct: 124 QSGALGTYFGLILTLLFYAIGGHLLWFELLIESYRILPAGTHAFAETSARDIVAFAGYGI 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + LP++ +LL + + G ++R AP L++F +G P + GI+ + +MP++ Sbjct: 184 ATAAAIGLPVVLVLLCVQVVTGTISRSAPALNLFALGLPAGVLAGIAALIVVMPIMVEQF 243 Query: 241 EHLF 244 L Sbjct: 244 TALL 247 >UniRef50_A2WHV1 Type III secretory pathway component EscT n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WHV1_9BURK Length = 256 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 4/247 (1%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 WL R+ + P L + + + +++ P + + + Sbjct: 11 GWLLAAALGFARIGPIFFMLPFLDNNVLTGSARNAVIVIVALGFWPPPLNTVIELGTLPY 70 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L Q++ IG LG + + F AG +I Q G +F++ VDPA+ ++ LA ++ Sbjct: 71 LAAVAQELTIGAVLGALLAWPFWVFHAAGSLIDNQRGATFSSSVDPANGIDTSELANFLN 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTL-PIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 + ++L G + + ++ P+ G L A + A + + P Sbjct: 131 LFVGAVYLHNGGLDVFVRAIDGSYRLCDPLQGCALEWTAATQIIDAVIVKAVVVA---SP 187 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I LL ++LGLL R PQ++ F + + V ++ M + S + Sbjct: 188 VIALLFLCEMSLGLLGRFTPQMNPFSVSMTVKSVVVFGMLLIYMSPLFSGEIIALSPTLD 247 Query: 250 LLADIIS 256 + + Sbjct: 248 DIRAFLK 254 >UniRef50_A0LT72 Type III secretion system inner membrane R protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT72_ACIC1 Length = 259 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 109/240 (45%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L + +R A + PI R +P VK AM + F ++ +L Sbjct: 7 TPLLVAFLLATIRTSAWLVVVPIFGTRIIPGMVKAAFAMALAFPVSGALAPLAPAPQVLP 66 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 +Q + G+A+G FAAVR AG ++ G S DP + N VLAR+ Sbjct: 67 LCTAILQNVAAGLAMGVVTLTLFAAVRAAGGLLDYFGGFSLTYAFDPMAVQNDSVLARMY 126 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 D+LA+ L G+L L+ L+ ++ +P+ T ++ L +A P Sbjct: 127 DLLAVTLLFAGGGYLLLLKGLLSSYTVIPLASSHPARILAELATVNIGSFAVSCLEIAGP 186 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L+ +L+ ++ LGLL ++AP L++F +GFPL + V ++L+ + + L I + Sbjct: 187 LLAVLVVADIGLGLLTKIAPALNVFSLGFPLKILVTLTLVGGTFVALPHAVDALVERILH 246 >UniRef50_B9L5A9 Flagellar biosynthetic protein fliR n=2 Tax=Thermomicrobia (class) RepID=B9L5A9_THERP Length = 260 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 1/222 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++VT+ S + L+ + RV ++S P ++VP ++ LA+++ A+ P +P + Sbjct: 1 MEVTTPLIPSSIALFVLVVTRVGLVLSLLPGFGSQAVPLPARVALAVVLALALVPFVPTD 60 Query: 62 DVPVFSFFALWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + +A+ ++++ G+ALG + FAAV A +IG Q+G A +PA + Sbjct: 61 ASGLSDPTVFAVALARELVTGLALGLAVAAVFAAVEMAASLIGYQLGFGLAATFNPAFGM 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 L + LA L+ NGH L+ L + LP G + + A+ +F Sbjct: 121 QGTALNTLYLALAALVLFGTNGHHQLVGALARSLILLPPGAAAPDVDTPRAVIALTGAMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTL 222 + L + LP+ LL ++ LGLLNRM PQ+S+F +G P + Sbjct: 181 SDALRIGLPIAGSLLVADIGLGLLNRMVPQMSVFFVGLPAKI 222 >UniRef50_Q01PP9 Type III secretion system inner membrane R protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP9_SOLUE Length = 257 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 1/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV-PVFSFFAL 71 L + L RV + PI R P+ V+ LA+ A+ PA D V Sbjct: 12 LYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQVGPATLA 71 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + + +G+A+G ++ A+ A +++GLQ G ++A+ +DP + + +L + Sbjct: 72 GWLLSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGILLVFAQL 131 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 ++ +LF ++ L + +P G + + L + G+++F G+ LALP++ Sbjct: 132 MSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILFSVGVRLALPVV 191 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 LL+ L++AL LL R+ QL + + FP+ + + +++ + + + Sbjct: 192 ALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVVREISGQAMIAA 251 Query: 252 ADIIS 256 ++ Sbjct: 252 HRMLG 256 >UniRef50_Q3V884 Flagellar biosynthetic protein FliR n=16 Tax=Listeria RepID=Q3V884_LISMF Length = 253 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 109/239 (45%), Gaps = 1/239 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 + RV + + P+L R++P VK+ M I+ +A + + + + Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITMLPDLL 63 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L +++ G+AL ++ + AG +I +G S +DP+ + A I+D Sbjct: 64 LR-VTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILD 122 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +++FL+ G +LI L+ +F L + + +ALP+ Sbjct: 123 TFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIALPI 182 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 + + +N+ L +++ APQ++IF+ F + +T GI ++A +P+++ ++L E+ Sbjct: 183 MGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMIQ 241 >UniRef50_A8LMR5 Flagellar biosynthesis protein FliR n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LMR5_DINSH Length = 257 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 3/238 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 ++ LLR+ A ++ P ER+VP R+KL L + +T + P+L A P A W Sbjct: 13 FPVFILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADW 72 Query: 73 LAVQ--QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + +++ G+ LGFT + A++ AG I L+ F + P L I Sbjct: 73 VLAGGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQV-FGGAVTPDPQPALGNIFL 131 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 M L L H+ L + +F LP+G P + S +F+ G L+ P Sbjct: 132 MAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSAPF 191 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 + + NLALG +NR PQL + +G P G++L A +P + +LF Sbjct: 192 VAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHWWYLFEASI 249 >UniRef50_C8WWG4 Type III secretion system inner membrane R protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG4_ALIAD Length = 258 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 2/254 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVP 64 L NL+ R I APILS P K+ LA+ + PS+ A D+ Sbjct: 3 NDVLEHFNLFLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVPDIA 62 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + ++G+ LGF + F + AG+++ LQ+G++ A P V Sbjct: 63 TQPGPFVVDFALEAVVGVVLGFVATWIFNTMNIAGQLVDLQIGMAVADLAMPGFGQQAGV 122 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + + ++ LLF+ G L S ++++F +PI L ++ + + L G+ Sbjct: 123 FSSVYNVWFSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLMGV 182 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 +ALP+ L ++ LL R PQ++ FV+ P L VG++ A +P+ L Sbjct: 183 DVALPVFASLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTVGLFRQLL 242 Query: 245 SEIFNLLADIISEL 258 + +F L ++ + Sbjct: 243 NLVFLNLQSVMRLV 256 >UniRef50_B4U883 Type III secretion system inner membrane R protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U883_HYDS0 Length = 258 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 113/246 (45%), Gaps = 4/246 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + +L + LR+ +++ API + +P K+ + + ++ P V SF Sbjct: 7 IPYLITFLLITLRISSIVFLAPIFGD--LPNSFKIFFVIAFSVSLYYYNPVKPVYTDSFI 64 Query: 70 AL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L +A+++ +G + ++F GE + +GLS AT ++P N +L Sbjct: 65 ILTLMALKEFSLGFIISLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMG-NSTILGTY 123 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + LF +G ++ +L ++ ++P+G L + + F LAL Sbjct: 124 FSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLYNMRPEFILNIFYKSFYTAFQLAL 183 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+I + L +N+ L +NR+ PQ+++F++G PL +G+ + + PL+ +F F Sbjct: 184 PMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFEHYF 243 Query: 249 NLLADI 254 + + Sbjct: 244 KFMLEF 249 >UniRef50_B1T8E1 Type III secretion system inner membrane R protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T8E1_9BURK Length = 252 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 2/246 (0%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 +++ W LRV L+ AP ++ VP R+++ L + + A+A LPA Sbjct: 2 SADTLTGWAMASLLLSLRVGPLVMFAPPFAQLRVPLRIRVCLVLALAGALATPLPAQLRN 61 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + A+ ++ +G L F +Q AFAA+ AG + +Q G AT +DP S P+ Sbjct: 62 APAML-VASAISELALGFTLAFPLQAAFAALSFAGRALDVQAGFGLATVIDPGSRSQAPL 120 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 ++ + A + HL L+ L+ + +P G + S+ A + G+ Sbjct: 121 FGTLLTLGAGAICFASGAHLELLRLVAASIERMPPGTARIVSSP-QAFIGYFGRVMGIGI 179 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ L ++L++ L+R PQL+ ++G + I + A + L+ P L Sbjct: 180 GAVAAVMLALFLIDLSIAFLSRTLPQLNALMLGLQVKAIAAIVVTALSIGLLGPVTLRLL 239 Query: 245 SEIFNL 250 Sbjct: 240 RASLEF 245 >UniRef50_D2R542 Type III secretion system inner membrane R protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R542_9PLAN Length = 277 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 2/248 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67 L + ++ L R+ L+ P+ SVP + + LA+ I + P P Sbjct: 9 LDQIVIFSLVLTRIGMLVFILPMFGSSSVPMQARAILAIAIALILTPVYAGALPSPPENL 68 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + ++ ++G+ALG + A ++ AG II G++ A +P ++P+ ++ Sbjct: 69 MMLGLMLARESMLGLALGLAVMILLAGMQLAGSIISQMSGMTLADVANPTFDTSVPIFSQ 128 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++ML+L +F + GH ++S L+DTF +P G A L + F G+ A Sbjct: 129 LLEMLSLAIFFSLGGHRLVMSALLDTFKFMPPGQATFPEEAVEMLATIFTHSFEIGIRAA 188 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P I LL L + L++R PQL+ +G + ++++A + A + Sbjct: 189 APAIISLLLAILVVALISRTLPQLNSVAVGLNFNAMIVLAILALSLGSAAMVFQEELEPT 248 Query: 248 FNLLADII 255 + I Sbjct: 249 IVSITQSI 256 >UniRef50_A8IPM9 Type III secretion system inner membrane R protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IPM9_AZOC5 Length = 249 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 5/242 (2%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP----VFSF 68 + F R+ + I P LS +P RV+L LA+ ++ AI P + + V S Sbjct: 8 ILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNFIRNANSA 67 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L ++ G +G + + ++ I +GLS + P +P LA + Sbjct: 68 QLLLSIGTEMATGAIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGL-PEDGEVLPSLATL 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 M + A + + H ++ L+ ++ +P+G A + + S + + LA Sbjct: 127 MILAATTMMFLTDQHYEMLRGLIASYRQIPVGVGFGGRGALIQASDQLSAALMIAMRLAS 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P + L +N A+GL+N++ PQ+ ++ I P L G+ L+ L + F+ Sbjct: 187 PFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSAAFNLFL 246 Query: 249 NL 250 Sbjct: 247 RT 248 >UniRef50_A3SFT0 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3SFT0_9RHOB Length = 251 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 2/239 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFS 67 + +F R+ + P E +P R +L LA++I+ ++ P P A+ +P + Sbjct: 7 ISTLFFSFFVVFARIGTALMFMPGFGEVQIPVRPRLSLAVLISLSLLPLTPIASALPDSA 66 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 A++L ++LIG+ +G + +A++ AG +G GL+ A S ++A Sbjct: 67 VTAVFLLGAEVLIGLWIGLCARILLSALQFAGFQVGQVSGLANAFGPSFGSFEGATMVAT 126 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++ M A+ + + H +I L+ ++ P G L ++ + + S G +A Sbjct: 127 LLLMSAVTMIFVTDTHHLIIRALLASYQVFPPGQFVL-ADLADQILRVASASLYIGTAIA 185 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 P + + LNL +GL NRM PQL +F + L + G+ ++A +P + + F E Sbjct: 186 APFFVMGVILNLGMGLANRMMPQLPVFFVAASLLIGAGLLILAIALPAMLDYFLVRFQE 244 >UniRef50_B9KQI0 Type III secretion system inner membrane R protein n=5 Tax=Rhodobacter RepID=B9KQI0_RHOSK Length = 260 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 4/207 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ 76 F LRV A ++ P E S+P RV+L A+ T + P+L +D +L + Sbjct: 23 FLVFLRVGAAMALLPPFGETSLPVRVRLAAALAFTAIVFPAL--SDRVPIYDGSLAPLLA 80 Query: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 + +G+ LG +++ A++TAG I S A + PV+ I+ + L L Sbjct: 81 ETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILTLAGLAL 138 Query: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 + H+ + L+ ++ LP P ++ F G MLA+P + Sbjct: 139 AVVGGLHVQIALFLIQSYDILPAARLPDPADVATWGLTLVVKSFALGFMLAMPFVAASFI 198 Query: 197 LNLALGLLNRMAPQLSIFVIGFPLTLT 223 N+ALG++NR PQL +F +G P Sbjct: 199 FNVALGIVNRAMPQLMVFFVGAPALTF 225 >UniRef50_C0QXX3 Flagellar biosynthetic protein fliR n=2 Tax=Brachyspira RepID=C0QXX3_BRAHW Length = 253 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF--ALWLAVQQ 77 ++R +A++ AP+ S +P +K+ LA + T AI P + +V F V + Sbjct: 1 MVRFVAILMVAPLFSSNVIPNTIKMALAFIATAAIFPLVANVNVQAAPTFVEYFLTLVNE 60 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 LIGI +GF M FAA + +QMG + VDP S + +PVL ++ ++ +LLF Sbjct: 61 ALIGILIGFLMSIIFAAYQVMANFFEIQMGFGISETVDPISQVTVPVLGQLQSLVVILLF 120 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEP-------LNSNAFLALTKAGSLIFLNGLMLALPL 190 + +G W+I L +F +PI E + + S +F L LALP+ Sbjct: 121 IAIDGPSWVIRTLFYSFKAMPILSEASKAVFTSSFNGVIDRMIYYMSSLFSVALSLALPI 180 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + L L+L+LGLL + APQ++I ++GFP+ + VG++ L+P++ + Sbjct: 181 MLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIAVGVAAYYILIPVLVSNFMKVLETTIAD 240 Query: 251 LADII 255 + +II Sbjct: 241 VNNII 245 >UniRef50_Q0G4G4 Flagellar biosynthesis protein n=2 Tax=Aurantimonadaceae RepID=Q0G4G4_9RHIZ Length = 250 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 5/244 (2%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--- 62 SE +++ +F R+ + P S +P +V+L LA I+ A++P L Sbjct: 2 SEAASAFVFAHFLVFCRIGTCLMLLPGYSSNRIPAQVRLFLAFAISLALSPLLLPLIEPL 61 Query: 63 -VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V L L +++ G +G + A+ G +I +G+ Sbjct: 62 VVGASDARRLELVFSEMMTGFFIGLLGRCFLIALSFVGYVIANAIGMG-QQLGPVYEDSP 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 P + ++ M A +L N H + LV ++ LP + + LT L F+ Sbjct: 121 DPAIGTLITMTATVLIFITNLHAEIARALVASYTALPAAEGFGIQASLVNLTDNLKLTFV 180 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 L +A P + + +N A+GL N++ PQ+ ++ + P L G+ L ++ Sbjct: 181 LCLRIASPFVLYAIIVNFAIGLANKLTPQIPVYFVSLPFVLAGGLILFGYVIGDFLIIFM 240 Query: 242 HLFS 245 + F Sbjct: 241 NAFE 244 >UniRef50_B2IG71 Flagellar biosynthesis protein FliR n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IG71_BEII9 Length = 251 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 4/230 (1%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF----SFFALWLAV 75 R+ + P S +P +V+L LA+ +T + P L P L + Sbjct: 16 FCRIGFCVMLLPGFSSPRIPLKVRLALALALTLTLTPFLAEEVRPALRDETPLLLAHLMI 75 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 + L+G +GF+ + FAA+ T + + +G++ +PVL+ ++ + A + Sbjct: 76 SESLMGFFIGFSARIFFAALETTANAMAMMIGMTNVLGAPVNEEEPLPVLSALVTLSATV 135 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 L + H ++ LV ++ +P+ + + + S F LA P I + Sbjct: 136 LLFIMDLHWEILRGLVGSYKAVPVIDHFNARLDLVQVADSLSKAFFLSFRLAGPFIIFSI 195 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 +NLA+GL+N+M PQ+ I+ I P L G+ L A + F Sbjct: 196 IVNLAVGLINKMIPQIPIYFITMPFVLIGGLFLFFATSTQLFELFMFGFR 245 >UniRef50_A8URB1 Flagellar biosynthetic protein fliR n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URB1_9AQUI Length = 254 Score = 113 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 2/246 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 L RV A + P+ +P +++ LA + +I + + S Sbjct: 9 LLTILLLFFRVFAFMFMVPMFGTFFLPNIIRVYLAFAVAASILMFSDLEPLQISSALEFS 68 Query: 73 -LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 LA+Q+++ G GF ++ F V AGE+I + GL F P VLA + Sbjct: 69 KLALQEVIFGFLSGFFLRLLFDTVFVAGEVIAVNTGLGFLMMFLPQ-QPQTTVLAGFSTL 127 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 +A LFL G + L +F+++PIG + S A F G+ LALP++ Sbjct: 128 MASTLFLAVGGAEAVYVGLAQSFNSVPIGSFDIYSMNGKAFLSLFYKSFSLGVKLALPVL 187 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + N+ L ++NR PQ+++F++G PL + VG++++ +P+I E Sbjct: 188 IAAMLTNIILAVINRFIPQINVFMVGLPLQVMVGLTVLLLSLPVIGLVLISYMREYMLNF 247 Query: 252 ADIISE 257 I Sbjct: 248 LSFIGS 253 >UniRef50_Q84CR1 Putative type III secretion protein n=3 Tax=Bordetella RepID=Q84CR1_BORPE Length = 266 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 105/261 (40%), Gaps = 4/261 (1%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 + + +L R+L + P+ + + +P ++ + + + P L Sbjct: 4 EFNFVEAKVFLGTLAMTQPRILTAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQY 63 Query: 63 VPVFSFF--ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + L L ++ ++G+ LG+ F G +I Q G S ++PA+ Sbjct: 64 AALDIDWPRLLALLAKEAMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGN 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSL 178 + + + ++ ++ FLT G ++L D+F I + + + + S Sbjct: 124 DSSPMGILFNLGFMVFFLTAGGFGLFATMLYDSFGLWNIWAWWPSMPAQGAVRMLDQFSG 183 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 L+LA P I + L L L++R APQL +F + P+ + + ++ M + Sbjct: 184 FAARVLLLASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLFVLVLYMATLFQ 243 Query: 239 FCEHLFSEIFNLLADIISELP 259 + + + ++ + S P Sbjct: 244 YAGEILGSVGRIVPFLHSAWP 264 >UniRef50_C9NP55 Type III secretion protein SpaR n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NP55_9VIBR Length = 259 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 109/247 (44%), Gaps = 4/247 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV--PVFS 67 L WL L RVL ++ P+ S R + ++ G+A + IAP + +D + S Sbjct: 10 LLWLKTLSVALARVLPIVIMVPLFSSRELKGVIRYGVAFALCMFIAPLIYGDDALHTMAS 69 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 +L ++++++GI +G M F + G + Q G +P L+ Sbjct: 70 NQLSFLLLKELVLGIVIGALMAMPFWLFDSVGALFDNQRGALIGGQFNPLLSGVSSPLSH 129 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG--GEPLNSNAFLALTKAGSLIFLNGLM 185 ++ A+++ + G L+ + +++ P + + S+ F ++ Sbjct: 130 MLQQCAIIVLIEVVGVNVLLDTIWNSYRAWPPLRWTPAFSPDMNQQWLANISITFTKMIL 189 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 A PLI ++L + A+ LL +PQ+ +FV+ P+ VG++++ + ++ F E Sbjct: 190 YAAPLIVVMLFIEFAMALLGLYSPQMQVFVLSIPIKCLVGMAMLTIYLSVLLRFMEQDME 249 Query: 246 EIFNLLA 252 +LL Sbjct: 250 YFGDLLR 256 >UniRef50_A0P0L6 YscT; putative type III secretion protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P0L6_9RHOB Length = 282 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 7/259 (2%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDV 63 E + + L R+ A I+ + ILS VP+ + G +++ + P + + Sbjct: 8 FEIFEKHMLSLAMSLPRIYAFIAMSGILSTGVVPRLARNGAILILALPLVPVNMANISLI 67 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 ++ IG +G+ + + F +V +AG+ + Q G + A+ +DP Sbjct: 68 GDSLPALALYFAKEYAIGFLIGYMIGWIFWSVTSAGDFMDNQRGAAIASSIDPLQGQETT 127 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSLIFL 181 L + L + G L +I +L +F P+ ++ + + + L Sbjct: 128 PLGNLFSQAFLTYMYSVGGILIIIGILYKSFMIWPVTRMLPIVSERFPVLILEILDLGMR 187 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC- 240 +LA P+I L+ LAL L++R APQ+ +F++ + + ++ + ++ P+ Sbjct: 188 TMFVLAAPVIALMFLSELALALVSRFAPQIQVFILSMGIKSGIATFVLVFYIKILFPYAT 247 Query: 241 --EHLFSEIFNLLADIISE 257 + LF E N L +I+ Sbjct: 248 EGQALFFENTNRLYEILEA 266 >UniRef50_C4L639 Flagellar biosynthetic protein fliR n=2 Tax=Exiguobacterium RepID=C4L639_EXISA Length = 256 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 4/248 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + ++++Y R+ + P+ S R +P ++G + + + +L + + Sbjct: 4 VDFISMYGLTFARLSGFFVSVPLFSTRQLPVMHRVGFSAFLAYYAMFTL--TEPIQMTNA 61 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + V +++IG+ LG + F A + AG +I LQ+GL+ A+ DP P++ R Sbjct: 62 FVLQVVYEVMIGLLLGLLINILFFAPQIAGGVIDLQLGLAMASAYDPMFGGQSPLIGRFY 121 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN--SNAFLALTKAGSLIFLNGLMLA 187 + L + LT N HL LI + +F P G +N + + K ++ + L LA Sbjct: 122 YIFTLFILLTSNLHLLLIDGIYYSFQIYPPGQPMINFTEASLMMAVKVVTMTMMVALQLA 181 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP++ LL ++LALG L + APQ +IF IGF L G ++M LM L + Sbjct: 182 LPMMASLLLVDLALGFLAKSAPQFNIFAIGFSFKLIAGFAVMVLLMGLTLTGISQFIPLL 241 Query: 248 FNLLADII 255 ++ D + Sbjct: 242 QEVMHDFM 249 >UniRef50_B3RAC7 SctT: non flagellar T3S system conserved inner membrane protein. fliR/mopE/spaR family n=1 Tax=Cupriavidus taiwanensis RepID=B3RAC7_CUPTR Length = 271 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 2/235 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + + R+L + P LS++++P + G+ + I ++P + V L Sbjct: 22 IMPIVMVMPRLLTAFTVLPFLSQQAIPGVARNGIVLAIALFVSPGARIDLDAVAGGLWLV 81 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 L ++ IG+ LG F A++ GE+I Q G ATF DP + + ++ Sbjct: 82 LIFKEAFIGLLLGMAFGLFFVALQMIGELIDFQTGSGNATFFDPVTQQEDGPMENLLSHF 141 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLNGLMLALPL 190 + LF G + + ++V++F P+ ++ + +F + LA P+ Sbjct: 142 GIALFAALGGFIAMTGVIVESFAFWPVMSFGPEMSLASMGFANLYAGTLFSWVVKLAAPI 201 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 + LL+ + L L+ R PQ +F P+ ++V ++ ++ ++ + Sbjct: 202 LLLLVIVELGFALIARFVPQFDVFQFAQPVKISVAFLMLVLMLAVMVDTLQGFLR 256 >UniRef50_P0A1M6 Surface presentation of antigens protein spaR n=7 Tax=Shigella RepID=SPAR_SHIFL Length = 256 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 105/239 (43%), Gaps = 2/239 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 E +L L R+ L P L+ + +++ + ++ + S + Sbjct: 7 FESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSS 66 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 +L ++I++G+ L F + F G II Q G + ++ +DPA+ ++ L Sbjct: 67 VFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSEL 126 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 A+ ++ + ++FL G ++++ + +++ P+ S + +L+ ++ Sbjct: 127 AKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL--FSQCSFRISNILTFLTLLASQAVI 184 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 LA P++ +LL + LG+L+R APQ++ F + + + I ++ I F Sbjct: 185 LASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFF 243 >UniRef50_A4EG21 Flagellar biosynthetic protein FliR n=4 Tax=Rhodobacteraceae RepID=A4EG21_9RHOB Length = 259 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 3/240 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFA 70 L F R+ A+++ P ++ VP RV+L LA+M T +AP++ + VP Sbjct: 15 LWTLFAVFTRIGAVMAVLPAFGDQPVPTRVRLVLAVMFTLIVAPAVAPSFETVPTALLAG 74 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + + L G+ G ++F ++ AG I LS F A+ P + ++ Sbjct: 75 FGILAMEALTGLFFGIFLRFFILVLQIAGSIAAQSTSLSQI-FGGTAAVDPQPAIGHMLV 133 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + L H+ S ++ T+ +P G S F G MLA P Sbjct: 134 VSGTALAALSGLHIQAASYMIHTYTLVPFGAGLERSLVAEVGVAEVGRTFGFGFMLAAPF 193 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + L N+ LG++NR PQL + +G P G+ L P++ FS+ + Sbjct: 194 LIASLIYNVVLGVINRAMPQLMVSFVGAPALTAGGLFLFFLTAPIMLAIWVAAFSDFMGM 253 >UniRef50_B5YIZ0 Putative flagellar biosynthetic protein-like protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ0_THEYD Length = 243 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 116/250 (46%), Gaps = 11/250 (4%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E + + +RV ++ P + R+VP + A+ I+ AI P + + + Sbjct: 5 ELLTTNFYSFIPVFIRVSIILFFLPYIGSRTVPIMFRFFFALSISLAIIPFIHVKEENL- 63 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 L ++ G+A+G ++ AAV A + + +Q+G + A +P M L+ Sbjct: 64 ----LISLFNAVVFGMAIGIMVRVIIAAVEIASQWMSMQIGFTIANVFNPQFGELMGPLS 119 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 +M + LF + + HL + ++V TF P+ + + ++F L L Sbjct: 120 IFYEMFTIALFFSLDLHLSFVEMIVKTFE------FPIKFSFSGNIIAFSYIMFPLALKL 173 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 A P++ + + +N+ LG L+R+ PQ ++F +GFPL L GI++M +P+ F Sbjct: 174 AAPVLLVQVLMNIGLGFLSRIMPQANVFFVGFPLLLATGIAVMWLSIPIFTMVLSKAFIN 233 Query: 247 IFNLLADIIS 256 + + L ++ Sbjct: 234 LKDALFGLLR 243 >UniRef50_C0QP99 Flagellar biosynthetic protein FliR n=3 Tax=Hydrogenothermaceae RepID=C0QP99_PERMH Length = 260 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 5/237 (2%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN----DVPVFSFFA 70 + L R++ + + P+L+ +P V++ L + ++F I N Sbjct: 12 TFGLVLSRIIGIFLSFPLLNTGLIPANVRILLVVSLSFYIMKIFGINAGISPENFSVLLY 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L ++++L+G LG + +A A EII MG + DP + VL R Sbjct: 72 FLLVLKELLMGFLLGLLVNLFISAFSYAAEIISYFMGFTIVNLFDPTFG-QISVLDRFFI 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +L LLF + ++ L TF +P+G +N++ F L + ++F L +A P Sbjct: 131 LLFYLLFFITGAYQIVLGSLFMTFKIMPVGKLYINTDIFPHLLEKLPILFYLALKIAFPF 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 + +LL +N+AL L+NR+ PQ+++F++G PL + VG++ +A LI F + + Sbjct: 191 VLILLIVNVALALINRLIPQINVFIVGLPLQIFVGLASLAIGTSLIIYFSISVIERL 247 >UniRef50_B2VEH3 Type III secretion apparatus n=1 Tax=Erwinia tasmaniensis RepID=B2VEH3_ERWT9 Length = 242 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 4/220 (1%) Query: 14 NLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 +Y R+ + PIL +R + VK + ++ + P + V ++ Sbjct: 1 MIYVVAYARLAIVFYLLPILGDRILSNLIVKNSIISLVIIGLWPCYEPDIVTERGLISVL 60 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 V++ +G+ L + F V G+I+ Q G + DP S VL+ + Sbjct: 61 --VEECFMGLLLATVLCIPFWIVIALGDILDNQRGATINDIFDPLSGGQNSVLSAFFNFS 118 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 ++F + NG L L++ L+ ++ LP G + N + K + +MLA P+I Sbjct: 119 FGMIFFSSNGMLLLMNALMKSYQYLPQGHDISGVN-WSKAGKLLVELVECSIMLAAPVII 177 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAAL 232 +LL + LG+ R PQL+ F + L + + Sbjct: 178 VLLVTEILLGVFARYCPQLNAFSLSLTLKSFITFIIFLLY 217 >UniRef50_Q2T714 Type III secretion system protein BsaY n=30 Tax=Burkholderia RepID=Q2T714_BURTA Length = 251 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 5/216 (2%) Query: 25 ALISTAPILSERSV-PKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIA 83 + P L++R++ VK + + + PS P+ +A+ + G+ Sbjct: 24 PVFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSFAHP--PLRGGALAGIALTEAAAGLV 81 Query: 84 LGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGH 143 LG + F GE+I Q G + + +DPA+ + LA + + FL G Sbjct: 82 LGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQGGM 141 Query: 144 LWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGL 203 L ++ L ++ T+P G S + + + +GL LA P++ ++ + LGL Sbjct: 142 LTIVGALESSYATVPAGAPF--SADLPRVGALLTDLVAHGLALAAPVLIVMFVTDALLGL 199 Query: 204 LNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +R PQ++ F + + V ++ AP Sbjct: 200 FSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 235 >UniRef50_O85641 EscT n=26 Tax=Enterobacteriaceae RepID=O85641_ECOLX Length = 258 Score = 109 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 107/239 (44%), Gaps = 4/239 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSV-PKRVK--LGLAMMITFAIAPSLPANDV 63 + ++ + F+ +LR L + PI S + ++ + +A + + + + Sbjct: 2 NEIMTVIVSSFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPIIVENYTFSEKL 61 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P F +A+++I IG +G + F A+ AG+II G + ++ +P+ + Sbjct: 62 PSGIFQLTGIALKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSS 121 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL-N 182 + I+ ++F+ G ++ L ++ LP+ + + A + + F+ Sbjct: 122 ITGVILYQFISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKL 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 L ++P+I + ++ G LN+ APQL++F + P+ + I ++ ++ + F Sbjct: 182 MLSFSVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q97H65 FliR/FlhB fusion protein n=1 Tax=Clostridium ace... 190 5e-47 UniRef50_A5I580 Flagellar biosynthetic protein n=19 Tax=Bacteria... 189 5e-47 UniRef50_C5RFV5 Flagellar biosynthetic protein FlhB n=1 Tax=Clos... 184 2e-45 UniRef50_B2TLW3 Flagellar biosynthetic protein FliR/FlhB n=6 Tax... 182 1e-44 UniRef50_A6M184 Flagellar biosynthetic protein FlhB n=4 Tax=Bact... 174 4e-42 UniRef50_C6IVX3 Flagellar biosynthetic protein fliR n=2 Tax=Baci... 173 5e-42 UniRef50_C9XJ38 Flagellar export protein n=7 Tax=Bacteria RepID=... 173 6e-42 UniRef50_C6P5I0 Flagellar biosynthetic protein fliR n=1 Tax=Side... 168 2e-40 UniRef50_Q3SIG3 Flagellar biosynthetic protein fliR n=41 Tax=Bet... 164 3e-39 UniRef50_B8I3N6 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 163 5e-39 UniRef50_A6SXX2 Flagellar biosynthetic protein fliR n=3 Tax=Oxal... 162 8e-39 UniRef50_P54702 Flagellar biosynthetic protein fliR n=162 Tax=En... 162 9e-39 UniRef50_A3DCP2 Flagellar biosynthetic protein fliR n=3 Tax=Clos... 162 9e-39 UniRef50_Q1GZV4 Flagellar biosynthetic protein fliR n=3 Tax=Meth... 162 1e-38 UniRef50_C5S861 Flagellar biosynthetic protein fliR n=1 Tax=Allo... 161 3e-38 UniRef50_P35537 Flagellar biosynthetic protein fliR n=20 Tax=Bac... 161 3e-38 UniRef50_B2AIF6 Flagellar biosynthetic protein fliR n=24 Tax=Pro... 159 8e-38 UniRef50_B8CYQ1 Flagellar biosynthetic protein fliR n=1 Tax=Halo... 158 2e-37 UniRef50_A1U244 Flagellar biosynthetic protein fliR n=8 Tax=Gamm... 157 2e-37 UniRef50_Q485K9 Flagellar biosynthetic protein fliR n=8 Tax=Alte... 157 3e-37 UniRef50_A4BIP6 Flagellar biosynthetic protein fliR n=1 Tax=Rein... 157 3e-37 UniRef50_B2A364 Flagellar biosynthetic protein fliR n=1 Tax=Natr... 157 4e-37 UniRef50_Q47I14 Flagellar biosynthetic protein fliR n=1 Tax=Dech... 156 5e-37 UniRef50_A1WCC7 Flagellar biosynthetic protein fliR n=8 Tax=Burk... 156 1e-36 UniRef50_A5D0I0 Flagellar biosynthetic protein fliR n=1 Tax=Pelo... 155 2e-36 UniRef50_UPI00016952B2 flagellar biosynthesis protein FliR n=1 T... 154 2e-36 UniRef50_Q0AEE8 Flagellar biosynthetic protein fliR n=5 Tax=Beta... 154 3e-36 UniRef50_Q2RKD3 Flagellar biosynthetic protein fliR n=1 Tax=Moor... 154 3e-36 UniRef50_Q4ZQU8 Flagellar biosynthetic protein fliR n=20 Tax=Pse... 154 3e-36 UniRef50_B5EEM8 Flagellar biosynthetic protein fliR n=2 Tax=Geob... 153 4e-36 UniRef50_C8WYW7 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 153 4e-36 UniRef50_A6W0V6 Flagellar biosynthetic protein fliR n=2 Tax=Mari... 153 5e-36 UniRef50_Q21IP9 Flagellar biosynthetic protein fliR n=2 Tax=Alte... 152 7e-36 UniRef50_C6BYP0 Flagellar biosynthetic protein fliR n=4 Tax=Desu... 152 8e-36 UniRef50_A1HN22 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 152 1e-35 UniRef50_D0KYN9 Flagellar biosynthetic protein fliR n=1 Tax=Halo... 152 1e-35 UniRef50_A1WUA7 Flagellar biosynthetic protein fliR n=3 Tax=Ecto... 152 1e-35 UniRef50_Q1QW39 Flagellar biosynthetic protein fliR n=1 Tax=Chro... 152 1e-35 UniRef50_Q2RZE7 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 151 2e-35 UniRef50_Q3V7I9 Flagellar biosynthetic protein fliR n=7 Tax=Vibr... 151 3e-35 UniRef50_UPI0001BC2FF2 flagellar biosynthetic protein FliR n=1 T... 151 3e-35 UniRef50_B8FTQ3 Flagellar biosynthetic protein fliR n=2 Tax=Desu... 151 3e-35 UniRef50_B2UJU2 Flagellar biosynthetic protein fliR n=6 Tax=Rals... 150 4e-35 UniRef50_Q12PK2 Flagellar biosynthetic protein fliR n=8 Tax=Gamm... 149 6e-35 UniRef50_C6D2V4 Flagellar biosynthetic protein fliR n=1 Tax=Paen... 149 6e-35 UniRef50_B9NJ47 Predicted protein n=6 Tax=cellular organisms Rep... 149 9e-35 UniRef50_Q2ITJ3 Flagellar biosynthetic protein fliR n=15 Tax=Bra... 148 1e-34 UniRef50_Q1IR58 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 148 1e-34 UniRef50_A8U5W1 Flagellar biosynthetic protein fliR n=1 Tax=Carn... 148 1e-34 UniRef50_A5F6D9 Flagellar biosynthetic protein fliR n=62 Tax=Vib... 147 2e-34 UniRef50_B9Z788 Flagellar biosynthetic protein fliR n=1 Tax=Luti... 147 4e-34 UniRef50_C0ZF83 Flagellar biosynthetic protein fliR n=1 Tax=Brev... 146 5e-34 UniRef50_A1K939 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 146 5e-34 UniRef50_Q7NTD4 Flagellar biosynthetic protein fliR n=1 Tax=Chro... 146 6e-34 UniRef50_C8W1H1 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 146 6e-34 UniRef50_Q1N2V1 Flagellar biosynthetic protein fliR n=1 Tax=Berm... 146 8e-34 UniRef50_A6GTX6 Flagellar biosynthetic protein fliR n=1 Tax=Limn... 146 8e-34 UniRef50_B3EAW1 Flagellar biosynthetic protein fliR n=7 Tax=Desu... 146 9e-34 UniRef50_B8GQZ8 Flagellar biosynthetic protein fliR n=2 Tax=Thio... 146 9e-34 UniRef50_Q7NUT8 Type III secretion system EscT protein n=5 Tax=P... 146 1e-33 UniRef50_Q3V7F9 Flagellar biosynthetic protein fliR n=5 Tax=Legi... 145 1e-33 UniRef50_B8CKZ1 Flagellar biosynthetic protein fliR n=22 Tax=Gam... 144 2e-33 UniRef50_B6AMB3 Flagellar biosynthetic protein fliR n=1 Tax=Lept... 144 3e-33 UniRef50_C1DAZ1 Flagellar biosynthetic protein fliR n=1 Tax=Lari... 144 3e-33 UniRef50_Q3J976 Flagellar biosynthetic protein fliR n=3 Tax=Gamm... 144 3e-33 UniRef50_C8WBS9 Flagellar biosynthetic protein fliR n=3 Tax=Zymo... 144 3e-33 UniRef50_A4SI10 Flagellar biosynthetic protein fliR n=4 Tax=Gamm... 144 4e-33 UniRef50_B9KJE3 Flagellar biosynthetic protein fliR n=4 Tax=Rhod... 144 4e-33 UniRef50_A4J751 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 143 5e-33 UniRef50_B0MPC9 Putative uncharacterized protein n=1 Tax=Eubacte... 143 6e-33 UniRef50_Q5DY35 Flagellar biosynthetic protein fliR n=37 Tax=Ent... 143 6e-33 UniRef50_A4Y0Q5 Flagellar biosynthetic protein fliR n=1 Tax=Pseu... 143 7e-33 UniRef50_Q31HN5 Flagellar biosynthetic protein fliR n=1 Tax=Thio... 142 8e-33 UniRef50_A3V236 Flagellar biosynthetic protein fliR n=3 Tax=Rhod... 142 1e-32 UniRef50_C6HWM1 Flagellar biosynthesis protein FliR n=1 Tax=Lept... 142 1e-32 UniRef50_C6NWP1 Flagellar biosynthetic protein fliR n=1 Tax=Acid... 142 2e-32 UniRef50_UPI0001C312BD flagellar biosynthetic protein FliR n=1 T... 141 2e-32 UniRef50_Q3A5E4 Flagellar biosynthetic protein fliR n=3 Tax=Delt... 141 2e-32 UniRef50_Q3V824 Flagellar biosynthetic protein fliR n=4 Tax=Baci... 141 2e-32 UniRef50_A5V2S0 Flagellar biosynthetic protein fliR n=3 Tax=Sphi... 141 2e-32 UniRef50_Q52497 HrpC protein n=5 Tax=Ralstonia solanacearum RepI... 141 2e-32 UniRef50_C4V4A3 Flagellar biosynthetic protein fliR n=3 Tax=Sele... 141 2e-32 UniRef50_Q3JKQ7 SctT n=58 Tax=Proteobacteria RepID=Q3JKQ7_BURP1 141 3e-32 UniRef50_C7R0I3 Flagellar biosynthetic protein fliR n=2 Tax=Micr... 141 3e-32 UniRef50_A4XIZ3 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 141 3e-32 UniRef50_B8FK33 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 141 3e-32 UniRef50_Q1YV75 Flagellar biosynthetic protein fliR n=1 Tax=gamm... 141 3e-32 UniRef50_A6W8L5 Flagellar biosynthetic protein fliR n=1 Tax=Kine... 140 4e-32 UniRef50_C1A548 Flagellar biosynthetic protein FliR n=1 Tax=Gemm... 140 4e-32 UniRef50_Q17YT4 Flagellar biosynthetic protein fliR n=18 Tax=Hel... 140 5e-32 UniRef50_A8F4V7 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 139 7e-32 UniRef50_Q0AYL9 Flagellar biosynthetic protein fliR n=1 Tax=Synt... 139 7e-32 UniRef50_A6U663 Flagellar biosynthetic protein fliR n=7 Tax=Rhiz... 139 7e-32 UniRef50_C4G685 Flagellar biosynthetic protein fliR n=1 Tax=Abio... 139 1e-31 UniRef50_A6TRN9 Flagellar biosynthetic protein fliR n=2 Tax=Alka... 139 1e-31 UniRef50_B0RSX9 Flagellar biosynthetic protein fliR n=13 Tax=Xan... 138 1e-31 UniRef50_C9A930 Flagellar biosynthetic protein fliR n=4 Tax=Ente... 138 2e-31 UniRef50_UPI00016C0EEE flagellar biosynthesis protein FliR n=1 T... 138 2e-31 UniRef50_B1I5J9 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 138 2e-31 UniRef50_D2S978 Flagellar biosynthetic protein FliR n=1 Tax=Geod... 138 2e-31 UniRef50_C4ZAM9 Flagellar biosynthetic protein fliR n=2 Tax=Clos... 138 2e-31 UniRef50_A5P6J2 Flagellar biosynthetic protein fliR n=1 Tax=Eryt... 137 3e-31 UniRef50_C7RLB3 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 137 3e-31 UniRef50_A2WHV1 Type III secretory pathway component EscT n=1 Ta... 137 3e-31 UniRef50_C0C1N5 Flagellar biosynthetic protein fliR n=1 Tax=Clos... 137 4e-31 UniRef50_Q2BJ96 Flagellar biosynthetic protein fliR n=1 Tax=Nept... 137 4e-31 UniRef50_D2TZ37 Type III secretion apparatus protein SpaR,YscT,H... 137 5e-31 UniRef50_A1SEN1 Flagellar biosynthetic protein fliR n=1 Tax=Noca... 137 5e-31 UniRef50_C6XLQ1 Flagellar biosynthetic protein fliR n=1 Tax=Hirs... 136 6e-31 UniRef50_C4Z5H7 Flagellar biosynthetic protein fliR n=3 Tax=Bact... 136 6e-31 UniRef50_Q4JMS6 Flagellar biosynthetic protein fliR n=1 Tax=uncu... 136 7e-31 UniRef50_A4YB60 Flagellar biosynthetic protein fliR n=18 Tax=Gam... 136 8e-31 UniRef50_B0P9X4 Flagellar biosynthetic protein fliR n=1 Tax=Anae... 136 9e-31 UniRef50_A9KNE1 Flagellar biosynthetic protein fliR n=1 Tax=Clos... 136 9e-31 UniRef50_Q3V817 Flagellar biosynthetic protein n=1 Tax=Symbiobac... 136 1e-30 UniRef50_C2ED98 Flagellar biosynthetic protein fliR n=1 Tax=Lact... 135 2e-30 UniRef50_C6WJP4 Type III secretion system inner membrane R prote... 135 2e-30 UniRef50_B3PF02 Flagellar biosynthetic protein fliR n=1 Tax=Cell... 135 2e-30 UniRef50_C0GJG4 Flagellar biosynthetic protein fliR n=1 Tax=Deth... 135 2e-30 UniRef50_A0NPF3 Flagellar biosynthetic protein fliR n=3 Tax=Rhod... 134 2e-30 UniRef50_A6F9S0 Flagellar biosynthetic protein fliR n=1 Tax=Mori... 134 2e-30 UniRef50_C4K6D9 Type III needle complex export protein n=2 Tax=C... 134 3e-30 UniRef50_B1K3A1 Flagellar biosynthetic protein fliR n=3 Tax=Beta... 134 3e-30 UniRef50_B8DMR4 Type III secretion protein SpaR/YscT/HrcT n=5 Ta... 134 3e-30 UniRef50_Q45975 Flagellar biosynthetic protein fliR n=3 Tax=Caul... 134 3e-30 UniRef50_Q7UXG3 Probable flagellar biosynthetic protein fliR n=1... 134 3e-30 UniRef50_C1SNG7 Flagellar biosynthetic protein fliR n=1 Tax=Deni... 134 3e-30 UniRef50_Q30PK9 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 134 4e-30 UniRef50_C6B1H0 Type III secretion system inner membrane R prote... 134 4e-30 UniRef50_Q1MQX3 Type III secretion component protein SctT n=1 Ta... 134 4e-30 UniRef50_D1R8P1 Putative type III secretion inner membrane prote... 133 4e-30 UniRef50_B4RGX9 Flagellar biosynthetic protein fliR n=3 Tax=Caul... 133 5e-30 UniRef50_B0SDH1 Flagellar biosynthetic protein fliR n=6 Tax=Lept... 133 6e-30 UniRef50_A9AP22 Type III secretion protein SctT n=18 Tax=Burkhol... 133 6e-30 UniRef50_B9L8B4 Flagellar biosynthetic protein fliR n=1 Tax=Naut... 133 6e-30 UniRef50_Q0ANB4 Flagellar biosynthetic protein fliR n=2 Tax=Hyph... 133 6e-30 UniRef50_D0WZK5 Flagellar biosynthetic protein fliR n=1 Tax=Vibr... 133 6e-30 UniRef50_C0QA54 Flagellar biosynthetic protein fliR n=1 Tax=Desu... 133 7e-30 UniRef50_Q2SH54 Type III secretory pathway, component EscT n=1 T... 133 7e-30 UniRef50_A4WT32 Flagellar biosynthetic protein fliR n=2 Tax=Rhod... 132 8e-30 UniRef50_C3XEY7 Flagellar biosynthetic protein fliR n=1 Tax=Heli... 132 9e-30 UniRef50_B6BI91 Flagellar biosynthetic protein fliR n=1 Tax=Camp... 132 1e-29 UniRef50_A3ZNZ1 Probable flagellar biosynthetic protein fliR n=1... 132 1e-29 UniRef50_D1B6A7 Flagellar biosynthetic protein fliR n=1 Tax=Ther... 132 1e-29 UniRef50_Q2W9Q3 Flagellar biosynthetic protein fliR n=3 Tax=Magn... 132 1e-29 UniRef50_A8TPM4 Flagellar biosynthetic protein fliR n=1 Tax=alph... 132 1e-29 UniRef50_A8RW99 Putative uncharacterized protein n=1 Tax=Clostri... 132 1e-29 UniRef50_Q9KKH0 YsaT n=8 Tax=Enterobacteriaceae RepID=Q9KKH0_YEREN 132 2e-29 UniRef50_B8HEJ0 Flagellar biosynthetic protein fliR n=1 Tax=Arth... 131 2e-29 UniRef50_Q1D9K4 FliR/MopE/SpaR family protein n=2 Tax=Cystobacte... 131 2e-29 UniRef50_A1UTW5 Flagellar biosynthetic protein fliR n=34 Tax=Rhi... 131 2e-29 UniRef50_Q2RQH6 Flagellar biosynthetic protein fliR n=1 Tax=Rhod... 131 2e-29 UniRef50_Q2SC30 Type III secretory pathway, component EscT n=1 T... 131 3e-29 UniRef50_A1TJC4 Type III secretion protein SpaR/YscT/HrcT n=5 Ta... 131 3e-29 UniRef50_C1TKH9 Flagellar biosynthesis pathway, component FliR n... 131 3e-29 UniRef50_A3NFU9 Flagellar biosynthesis pathway, component FliR n... 131 3e-29 UniRef50_A9HH75 Putative flagellar biosynthetic protein fliR n=2... 131 4e-29 UniRef50_B8EL38 Type III secretion system inner membrane R prote... 131 4e-29 UniRef50_C6N719 Putative flagellar biosynthesis pathway, compone... 130 5e-29 UniRef50_A0NT10 Flagellar biosynthesis protein n=2 Tax=Labrenzia... 130 5e-29 UniRef50_Q1Q6S6 Flagellar biosynthetic protein fliR n=1 Tax=Cand... 130 6e-29 UniRef50_C7I0T6 Flagellar biosynthetic protein fliR n=1 Tax=Thio... 130 6e-29 UniRef50_Q0EZ56 Flagellar biosynthetic protein fliR n=1 Tax=Mari... 129 7e-29 UniRef50_B6QWX6 Type III secretion apparatus protein SpaR/YscT/H... 129 7e-29 UniRef50_C5CXN3 Type III secretion system inner membrane R prote... 129 7e-29 UniRef50_B0K9T0 Flagellar biosynthetic protein fliR n=11 Tax=The... 129 7e-29 UniRef50_Q3V7R2 Flagellar biosynthetic protein fliR n=1 Tax=Bdel... 129 9e-29 UniRef50_C9R9Y0 Type III secretion system inner membrane R prote... 129 9e-29 UniRef50_Q28JK8 Flagellar biosynthetic protein FliR n=1 Tax=Jann... 129 1e-28 UniRef50_Q2LT08 Flagellar biosynthetic protein fliR n=1 Tax=Synt... 129 1e-28 UniRef50_Q93RC3 EpaR protein n=25 Tax=Enterobacteriaceae RepID=Q... 129 1e-28 UniRef50_A6LLB0 Flagellar biosynthetic protein fliR n=2 Tax=Ther... 129 1e-28 UniRef50_C0A797 Type III secretion system inner membrane R prote... 128 2e-28 UniRef50_B9Z4S1 Flagellar biosynthetic protein fliR n=1 Tax=Luti... 128 2e-28 UniRef50_D1AZH9 Flagellar biosynthetic protein fliR n=1 Tax=Sulf... 128 2e-28 UniRef50_Q84CR1 Putative type III secretion protein n=3 Tax=Bord... 127 3e-28 UniRef50_A0P0L6 YscT; putative type III secretion protein n=1 Ta... 127 4e-28 UniRef50_A7HWA0 Flagellar biosynthetic protein fliR n=1 Tax=Parv... 127 5e-28 UniRef50_C5SN71 Flagellar biosynthetic protein fliR n=2 Tax=Caul... 127 5e-28 UniRef50_C1F995 Flagellar biosynthetic protein fliR n=1 Tax=Acid... 126 6e-28 UniRef50_A0L3J6 Flagellar biosynthetic protein fliR n=1 Tax=Magn... 126 7e-28 UniRef50_B8DQ95 Flagellar biosynthetic protein fliR n=7 Tax=Desu... 126 7e-28 UniRef50_B0THC2 Flagellar biosynthetic protein fliR n=1 Tax=Heli... 126 8e-28 UniRef50_C3XLD0 Flagellar biosynthetic protein fliR n=2 Tax=Heli... 126 8e-28 UniRef50_Q6MES5 Putative type III secretion inner membrane prote... 126 1e-27 UniRef50_D2C589 Flagellar biosynthetic protein fliR n=6 Tax=Ther... 126 1e-27 UniRef50_C7DF44 Flagellar biosynthetic protein FliR n=1 Tax=Thal... 126 1e-27 UniRef50_B7KZ93 Flagellar biosynthesis protein FliR n=7 Tax=Meth... 126 1e-27 UniRef50_C6QF51 Type III secretion system inner membrane R prote... 126 1e-27 UniRef50_D2LCZ4 Flagellar biosynthesis protein FliR n=1 Tax=Rhod... 125 1e-27 UniRef50_A6DDV7 Flagellar biosynthetic protein fliR n=1 Tax=Cami... 125 1e-27 UniRef50_P40701 Surface presentation of antigens protein spaR n=... 125 2e-27 UniRef50_D2R542 Type III secretion system inner membrane R prote... 125 2e-27 UniRef50_Q8D3F3 Flagellar biosynthetic protein fliR n=1 Tax=Wigg... 125 2e-27 UniRef50_A0RQU4 Flagellar biosynthetic protein fliR n=23 Tax=Cam... 124 2e-27 UniRef50_P55722 Probable translocation protein y4yN n=6 Tax=Rhiz... 124 2e-27 UniRef50_C4XT80 Flagellar biosynthetic protein fliR n=2 Tax=Desu... 124 3e-27 UniRef50_Q1NP89 Type III secretion system inner membrane R prote... 124 3e-27 UniRef50_A4A5Y4 Flagellar biosynthetic protein fliR n=3 Tax=uncl... 124 3e-27 UniRef50_Q89AZ0 Flagellar biosynthetic protein fliR n=1 Tax=Buch... 124 3e-27 UniRef50_A6CEQ7 Flagellar biosynthetic protein fliR/B n=1 Tax=Pl... 124 3e-27 UniRef50_Q2T714 Type III secretion system protein BsaY n=30 Tax=... 124 4e-27 UniRef50_B6AV41 Flagellar biosynthetic protein FliR n=1 Tax=Rhod... 124 4e-27 UniRef50_Q11LQ0 Flagellar biosynthetic protein fliR n=3 Tax=Phyl... 123 5e-27 UniRef50_B6IS88 Flagellar biosynthetic protein fliR n=1 Tax=Rhod... 123 6e-27 UniRef50_B6IQA3 Flagellar biosynthesis protein FliR n=1 Tax=Rhod... 123 7e-27 UniRef50_UPI00019F17CD type III secretion system EscT protein n=... 123 7e-27 UniRef50_C8BNU9 HrcT n=1 Tax=Pseudomonas syringae pv. syringae R... 122 8e-27 UniRef50_P96068 Secretion system apparatus protein ssaT n=29 Tax... 122 1e-26 UniRef50_C1ZEF5 Flagellar biosynthesis pathway, component FliR n... 122 1e-26 UniRef50_C2KYZ8 Possible flagellar biosynthesis protein FliR n=1... 122 1e-26 UniRef50_Q21AA3 Type III secretion system inner membrane R prote... 122 1e-26 UniRef50_C2KTP9 Flagellar biosynthesis protein FliR n=3 Tax=Mobi... 122 2e-26 UniRef50_P0A1M6 Surface presentation of antigens protein spaR n=... 122 2e-26 UniRef50_B3RAC7 SctT: non flagellar T3S system conserved inner m... 121 2e-26 UniRef50_B2VEH3 Type III secretion apparatus n=1 Tax=Erwinia tas... 121 2e-26 UniRef50_C9NP55 Type III secretion protein SpaR n=1 Tax=Vibrio c... 121 2e-26 UniRef50_C0YFP8 Type III secretion apparatus protein SpaR/YscT/H... 121 2e-26 UniRef50_A5VVZ1 Flagellar biosynthetic protein fliR n=3 Tax=Bruc... 120 4e-26 UniRef50_O67773 Flagellar biosynthetic protein fliR n=1 Tax=Aqui... 120 4e-26 UniRef50_UPI0001744A0A translocation protein in type III secreti... 120 5e-26 UniRef50_Q3ADD0 Flagellar biosynthetic protein FliR n=1 Tax=Carb... 120 5e-26 UniRef50_Q3BYJ8 HrcT protein n=12 Tax=Xanthomonas RepID=Q3BYJ8_X... 120 5e-26 UniRef50_A3WGR2 Flagellar protein FliR n=1 Tax=Erythrobacter sp.... 119 7e-26 UniRef50_C5EFG8 Bifunctional flagellar biosynthesis protein FliR... 119 9e-26 UniRef50_C8PRD8 Flagellar biosynthetic protein fliR n=1 Tax=Trep... 119 9e-26 UniRef50_P69984 Yop proteins translocation protein T n=50 Tax=Ga... 119 1e-25 UniRef50_C6XF32 Flagellar biosynthesis protein FliR n=1 Tax=Cand... 119 1e-25 UniRef50_C2LLU3 Type III secretion system protein n=3 Tax=Proteu... 119 1e-25 UniRef50_C3KNB5 Type III secretion component, RhcT n=1 Tax=Rhizo... 119 1e-25 UniRef50_Q01PP9 Type III secretion system inner membrane R prote... 118 2e-25 UniRef50_A3D417 Type III secretion protein SpaR/YscT/HrcT n=35 T... 118 2e-25 UniRef50_A9BHY5 Flagellar biosynthetic protein fliR n=1 Tax=Petr... 118 2e-25 UniRef50_A0RCA1 Flagellar biosynthetic protein n=70 Tax=Bacillus... 118 2e-25 UniRef50_A0LT72 Type III secretion system inner membrane R prote... 118 2e-25 UniRef50_C7C777 Flagellar biosynthetic protein fliR n=8 Tax=Meth... 118 2e-25 UniRef50_C5ALL4 Type III secretion-associated protein n=21 Tax=B... 117 5e-25 UniRef50_Q3V884 Flagellar biosynthetic protein FliR n=16 Tax=Lis... 117 5e-25 UniRef50_A3W5F7 Flagellar biosynthetic protein FliR n=3 Tax=Rhod... 116 6e-25 UniRef50_C6CGR9 Type III secretion protein SpaR/YscT/HrcT n=18 T... 116 8e-25 UniRef50_Q1NCV3 Translocation protein in type III secretion n=1 ... 116 8e-25 UniRef50_B5JK51 Bacterial export protein, family 1 n=1 Tax=Verru... 116 9e-25 UniRef50_Q2SEX2 Flagellar biosynthesis pathway, component FliR n... 115 1e-24 UniRef50_B9L5A9 Flagellar biosynthetic protein fliR n=2 Tax=Ther... 115 1e-24 UniRef50_Q0G4G4 Flagellar biosynthesis protein n=2 Tax=Aurantimo... 115 1e-24 UniRef50_A1T0L3 Flagellar biosynthetic protein fliR n=4 Tax=Gamm... 115 1e-24 UniRef50_B1ZR30 Type III secretion system inner membrane R prote... 115 1e-24 UniRef50_B1T8E1 Type III secretion system inner membrane R prote... 115 2e-24 UniRef50_Q16DQ9 Flagellar biosynthetic protein FliR n=5 Tax=Rhod... 114 2e-24 UniRef50_C8WWG4 Type III secretion system inner membrane R prote... 114 3e-24 Sequences not found previously or not previously below threshold: >UniRef50_Q97H65 FliR/FlhB fusion protein n=1 Tax=Clostridium acetobutylicum RepID=Q97H65_CLOAB Length = 610 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 135/253 (53%), Gaps = 2/253 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 +++ F LRV A ++ +S+P VK+ L++ I+F + P + + V + Sbjct: 3 IAYFTSLFMVFLRVFAFFIALQVMFPKSLPNTVKVMLSLCISFFVMPYINLSQVSALNNG 62 Query: 70 AL--WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L W + +IL G+ LGF F V+ G+ + Q+G S T DP+S N ++ R Sbjct: 63 FLYTWQCICEILTGLILGFFANLMFLGVKIGGQFLDFQIGYSMMTAYDPSSESNASLIER 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++M +++LF + GH +I LV +F+++ +G +N + + F+ G +A Sbjct: 123 FLNMFSVVLFFSIGGHEVVIKELVSSFNSVKLGTFVINDQSVMVAFNVFVQFFVIGFKIA 182 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP++ +LL ++ +GL++R PQL++ ++G P+ + +G++ + ++PLIA FS + Sbjct: 183 LPVVLVLLITDIVMGLMSRTVPQLNVMILGMPIKILLGLTCLMIILPLIAKVLITSFSSL 242 Query: 248 FNLLADIISELPL 260 ++ +P+ Sbjct: 243 PDIYKGFYKLVPI 255 >UniRef50_A5I580 Flagellar biosynthetic protein n=19 Tax=Bacteria RepID=A5I580_CLOBH Length = 609 Score = 189 bits (482), Expect = 5e-47, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 2/253 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV--FSF 68 ++ R+ S PI + P K+ LA++I + + S+ + S Sbjct: 5 AYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSIDIRSINTINNST 64 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 ++ V +IL G LG+ AF R AG ++ LQ+G S T DP+++ N+ L RI Sbjct: 65 ALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERI 124 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + + ++F +GH LI LV++F+ + +G LN + F + +A+ Sbjct: 125 LYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAV 184 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ ++L +L LGL+ R PQL+I ++G P+ + VG++ +PL F + Sbjct: 185 PIVFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAFGMLP 244 Query: 249 NLLADIISELPLI 261 + + +P++ Sbjct: 245 DAIRGFYKTIPVL 257 >UniRef50_C5RFV5 Flagellar biosynthetic protein FlhB n=1 Tax=Clostridium cellulovorans 743B RepID=C5RFV5_CLOCL Length = 607 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 122/254 (48%), Gaps = 2/254 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--S 67 +++ LR+ + AP + P +K L +++ + + P + + Sbjct: 4 ITFFVALILITLRLAGMFIAAPGILPTGTPNILKAVLILILAYMVLPVINYSGASALTEP 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + G+A+GF + F A R AG II +Q+G S T DP ++ L R Sbjct: 64 TKLIIQCLNEFSTGLAVGFIINLFFIAARIAGSIIDMQVGFSMVTLFDPTANSTATYLER 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++A+++F +GH ++I + T+ + IG L+ + K + G+ +A Sbjct: 124 FFNLIAIMIFFIIDGHHYVIKAFIATYDKVSIGVFFLDQGTLQEILKLFGHFYAIGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 LP+I ++L ++ +G+L+R PQL+I ++G P+ L +G ++A P + F E+ Sbjct: 184 LPIILVILVADVLMGVLSRTMPQLNIMILGMPVKLLIGFGILAVSAPFFVRLITNSFQEV 243 Query: 248 FNLLADIISELPLI 261 + L I S ++ Sbjct: 244 PHALEKIFSITSIL 257 >UniRef50_B2TLW3 Flagellar biosynthetic protein FliR/FlhB n=6 Tax=Clostridium RepID=B2TLW3_CLOBB Length = 613 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 120/254 (47%), Gaps = 2/254 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 ++ F+ LR+ + + P +K L+++I+ A+ + + V + Sbjct: 4 TAYFLALFFIFLRLTSYFVIVNAFFQTGTPHILKGTLSLIISIAVLAGVDYSTVNEINNV 63 Query: 70 ALWLA--VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + +++ G+ LGF F V+ AG + + G S + +DP SH ++ Sbjct: 64 YYLIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHSQTTLIGN 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 M+A ++F +GH +I LL+++F +PIG + +A+ + F+ G+ +A Sbjct: 124 FSYMIATVIFFIVDGHHIVIKLLIESFRIVPIGQTLVYQETMMAVISTITEYFVLGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P++ +++ +L LGL++R P + I + G P+ +G+ L+PLI + Sbjct: 184 VPIVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSSAIYNL 243 Query: 248 FNLLADIISELPLI 261 ++ I +P I Sbjct: 244 SDVFEHIFRAIPAI 257 >UniRef50_A6M184 Flagellar biosynthetic protein FlhB n=4 Tax=Bacteria RepID=A6M184_CLOB8 Length = 613 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 125/257 (48%), Gaps = 5/257 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV--FS 67 +S+ F LR+ + I P+ ++ +++++F I + + V S Sbjct: 4 ISYFLALFLIFLRITSYFMAVQIFFPTGTPQIMQGVFSLILSFGIVAGIDHSTVSAVNSS 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + ++ A+ +I+ G+ LG+ F V+ AGE + + G S + +DP + +L Sbjct: 64 YMLVFYAISEIMSGLILGYITNLIFQVVKLAGEWMDIHAGFSMVSVLDPTTQTTSTLLGN 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + ++L F +GH +I++LV++ +PIG + + + K F G+ +A Sbjct: 124 LSYFISLAFFFIVDGHHVVINMLVESTKIIPIGKTIVYQETLMEVMKTIFDYFTLGVKIA 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE- 246 +P++ +++ ++ LGL++R P + I ++G P+ +G+ L+PL+ Sbjct: 184 IPIVLIIVITDVCLGLISRTVPTIPIMILGMPIKNLLGLITYIILLPLMLKLIGTAIYNL 243 Query: 247 --IFNLLADIISELPLI 261 IF + ++IS +PL+ Sbjct: 244 PSIFREIVNLISAIPLV 260 >UniRef50_C6IVX3 Flagellar biosynthetic protein fliR n=2 Tax=Bacillales RepID=C6IVX3_9BACL Length = 262 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 134/256 (52%), Gaps = 4/256 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + L ++++ R+ A +PI S RSVP K+G A +I I ++ N Sbjct: 2 DTILHGISIFMLIFCRMTAFFVVSPIFSSRSVPNTFKVGFAGIIAVVILLTIGPNQSIPN 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + ++++L+G+ +G+ F+ ++ AG I +Q+G A +DP + + PVL Sbjct: 62 DLGYILVIIREVLVGLLMGYVANLIFSVIQMAGSFIDIQIGFGIANVIDPMTGASAPVLG 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL----NSNAFLALTKAGSLIFLN 182 + ++A L+FL+ NGH +L+ ++ +++ +P+ + N N L + S F+ Sbjct: 122 NLKYIIATLVFLSMNGHHYLLDAVIRSYNWVPLSNQVFQQIYNGNLSEFLVQTFSQAFML 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 ++ PL+ L ++ALG L R APQ +IFVIG P+ + VG+ ++ L+P + Sbjct: 182 AFQMSAPLVVALFVTDVALGFLARTAPQFNIFVIGIPVKIIVGLLVLLVLVPGFIVAFQA 241 Query: 243 LFSEIFNLLADIISEL 258 LF +F L D++ + Sbjct: 242 LFEVLFRALHDLLGTI 257 >UniRef50_C9XJ38 Flagellar export protein n=7 Tax=Bacteria RepID=C9XJ38_CLODC Length = 604 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 120/246 (48%), Gaps = 3/246 (1%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA-- 74 + +R++A T IL P K A++I+ I+ ++ L+ Sbjct: 2 IFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTMQIEYATNIDNIVLFTLYG 61 Query: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 + + + GI LG+ F ++R AG ++ QMGLS DP S ++ +M+ A Sbjct: 62 INETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLIDNLMNWTAR 121 Query: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 ++F + +GH LI + +F +PIG +++N + FL G +A+P++ L Sbjct: 122 MIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCL 180 Query: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254 L + LGL++R PQL++ +IG PL + VGI+L +PLI HL S+I + Sbjct: 181 LMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISHLLSQIPKMYEGT 240 Query: 255 ISELPL 260 + P+ Sbjct: 241 FALAPM 246 >UniRef50_C6P5I0 Flagellar biosynthetic protein fliR n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5I0_9PROT Length = 262 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 104/259 (40%), Positives = 163/259 (62%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ TS Q +WL + +PL R+LALI+++P+ + VP R+K+G A+ IT IAP+L Sbjct: 1 MISFTSAQLSAWLAAFIFPLARILALIASSPLYGIKEVPARIKVGFAIAITIIIAPTLDI 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S L++ VQQI+ G+ +GF+++ F AV AG++ G+QMGL FA+F DP + Sbjct: 61 PANLDPASAQGLFVLVQQIVAGVIIGFSIRLIFVAVEMAGDLTGMQMGLGFASFYDPVNA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 P++A+ + +LA L FL NGHL+L+ L D+F PIG +++AF + + G + Sbjct: 121 TFTPIVAQFLGILASLAFLAANGHLYLLVALADSFRDFPIGATVPSAHAFRTMAEWGGSL 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + L +LPLI LL N+ALG+L R APQL+IF +GFP+T+ VG + +P +AP Sbjct: 181 FSHALQFSLPLIGALLITNIALGILARSAPQLNIFAVGFPITIAVGFVTLWLTLPYLAPV 240 Query: 240 CEHLFSEIFNLLADIISEL 258 ++ E N ++ I+ +L Sbjct: 241 MDYFTHEGVNSISRIMLQL 259 >UniRef50_Q3SIG3 Flagellar biosynthetic protein fliR n=41 Tax=Betaproteobacteria RepID=Q3SIG3_THIDA Length = 262 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 123/259 (47%), Positives = 162/259 (62%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +T Q WL + WPL R+L L+ AP+ R+VP RVK+GL + I AP+LP Sbjct: 1 MISLTDAQLNVWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPP 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V + S+ L++ VQQ LIG+A+GF M+ FAAV AGEIIGLQMGL FA+F DP S Sbjct: 61 MPAVGLGSWHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 VLAR +MLA+LL L N HL L+ +LV++F LPI EPL + F + G+ I Sbjct: 121 GQTLVLARFFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALPLI +LL NL LG+L R APQL+IF IGFP+TL VG+ ++ +P AP Sbjct: 181 FSLGLQLALPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQ 240 Query: 240 CEHLFSEIFNLLADIISEL 258 E L + + ++ L Sbjct: 241 FEQLIASGLDAATSVVRTL 259 >UniRef50_B8I3N6 Flagellar biosynthetic protein fliR n=2 Tax=Clostridium RepID=B8I3N6_CLOCE Length = 265 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 126/259 (48%), Gaps = 2/259 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +Q+ L+ + L+ +R+ L TAPI R++P K+G A + + + + Sbjct: 1 MQIPFGMLLNNVELFLLIFVRMTGLFVTAPIFGRRNIPVYYKVGFAFITAILASSVIRVD 60 Query: 62 DV--PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + +++ L+GI +GF F + AG+II +Q+G DP S+ Sbjct: 61 HIINTDNFLIFALYILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPISN 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +PV A + +L++++FL NGH LI L ++F +P+G + + + Sbjct: 121 IQIPVTANLYFILSMIIFLLTNGHHMLIRALYESFQIIPLGSAVIGPKLKDDVIGIMQGV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G +A P++ + ++ LG++++ PQ+++F++G PL + VGI ++ +P Sbjct: 181 FSMGFKIAAPIVAAIFITDVVLGIISKTIPQMNVFILGMPLKIFVGILIILITIPAFVYI 240 Query: 240 CEHLFSEIFNLLADIISEL 258 + ++ + + ++ Sbjct: 241 VTVITDDMNTQIFKFLKDM 259 >UniRef50_A6SXX2 Flagellar biosynthetic protein fliR n=3 Tax=Oxalobacteraceae RepID=A6SXX2_JANMA Length = 263 Score = 162 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 98/259 (37%), Positives = 157/259 (60%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +TS + +W+ + WPL R++ +IS AP+ SVP RVK+GL +++ IAP++PA Sbjct: 1 MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S L + QQ++IG+++GF M+ FA V AGEIIG+ MGL FA+F DP + Sbjct: 61 MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++ + +L L+++L N HL ++S L +F LPI L++ L + K G I Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G+ L+LP++ LL N+ALG+L R APQL+IF IGFP+T+ VG ++ ++P + Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNP 240 Query: 240 CEHLFSEIFNLLADIISEL 258 +L E + + I + Sbjct: 241 IINLMQEGIDAMGRITVAM 259 >UniRef50_P54702 Flagellar biosynthetic protein fliR n=162 Tax=Enterobacteriaceae RepID=FLIR_SALTY Length = 264 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 231/260 (88%), Positives = 246/260 (94%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVTSEQWL WL+LYFWPLLRVLALISTAPILSER++PKRVKLGL +MIT IAPSLPA Sbjct: 1 MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ND P+FS ALWLA+QQILIGIALGFTMQFAFAAVRTAGE IGLQMGLSFATFVDP SHL Sbjct: 61 NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 NMPVLARIMDMLA+LLFLTFNGHLWLISLLVDTFHTLPIG P+NSNAF+AL +AG LIF Sbjct: 121 NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LNGLMLALP+ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI LMAALMPLIAPFC Sbjct: 181 LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC 240 Query: 241 EHLFSEIFNLLADIISELPL 260 EHLFSEIFNLLADI+SE+P+ Sbjct: 241 EHLFSEIFNLLADIVSEMPI 260 >UniRef50_A3DCP2 Flagellar biosynthetic protein fliR n=3 Tax=Clostridium thermocellum RepID=A3DCP2_CLOTH Length = 261 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 126/258 (48%), Gaps = 1/258 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + V + ++ +R+ L API R++P K+G + M + ++ Sbjct: 1 MFVLEGILHVDIEVFMLIFVRMTGLFVIAPIFGSRNIPTYCKIGFSFMTALILVNTIKVQ 60 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ + L +++ L+GI LG+ F A+ AG+ I +Q+G +DP + Sbjct: 61 ELYFSNIYEYFILVLKEFLVGITLGYVAYMIFTAIYVAGQFIDMQIGFGVVNVIDPLNST 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + + + +L +L+FL GH LI L +++ +P+G + + + IF Sbjct: 121 QVSITSNFYFLLCMLVFLICRGHYILIRALFASYNYIPVGTGVFGEDMVNDIVRVFGNIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L ++ P+ ++ +ALG++++ PQL++F++G PL + +G+++M +P+ Sbjct: 181 LIAFKISAPITISIMISEVALGIVSKTVPQLNVFMVGMPLKIILGLAVMVITIPMFLNLV 240 Query: 241 EHLFSEIFNLLADIISEL 258 E+L + I N + + ++ Sbjct: 241 ENLITGIDNEMHIFLKDM 258 >UniRef50_Q1GZV4 Flagellar biosynthetic protein fliR n=3 Tax=Methylophilaceae RepID=Q1GZV4_METFK Length = 266 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 153/255 (60%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ V E W+ WPL R+LA I+ AP+ + R++P VKLGL +++T A+ PS+P Sbjct: 1 MVTVPEEFLQVWVATLMWPLTRILAFIAVAPLFNHRALPNNVKLGLGLVLTVAVMPSIPD 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V VFS L + QQ++IG A+GF+++ F+AV AG G+ MGL FA F DP + Sbjct: 61 IPPVSVFSMNGLLILCQQVIIGAAMGFSLRIIFSAVELAGHTAGMTMGLGFAMFYDPQTQ 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + + + +L++LLFL+ +GHL +IS L ++F + P+ EP + G I Sbjct: 121 GQSTSIGQFLVVLSMLLFLSIDGHLVVISTLAESFSSFPVTAEPNFGLDPYKIALWGGKI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+++LP+I LL NLALG+L R APQL++F IGFP+T+++G L+ +P + Sbjct: 181 FSAGLLMSLPIIAALLLANLALGVLTRAAPQLNLFGIGFPITISLGFLLLMLALPYMMQP 240 Query: 240 CEHLFSEIFNLLADI 254 + L E + + + Sbjct: 241 VQRLMHESMSFMQTL 255 >UniRef50_C5S861 Flagellar biosynthetic protein fliR n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S861_CHRVI Length = 260 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 146/256 (57%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-A 60 L + + L W WP +R+ A++ P+ R + RV+LGLA+++ + IAP LP Sbjct: 4 LTLEATDILRWTVSLVWPFVRISAMLLVMPVFGARQINARVRLGLALLLAWMIAPQLPEV 63 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + +A++Q LIGIA+GF + F+A+ AGE I L MGL FA+ VDP + Sbjct: 64 PAIDPLSVGGVVVAIEQALIGIAMGFVVTLVFSAINQAGEAIALSMGLGFASAVDPVGGV 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +P++++ + ++A L+FL NGHL L LL+ +F T PIG + ++ + GS +F Sbjct: 124 QVPMISQYLSIIATLIFLAMNGHLVLFELLLRSFETFPIGLDGPDNEDLWYIANFGSQMF 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +++ALP + LL +NLA+G++ R APQL+IF IGFP+T+ G ++ +P + Sbjct: 184 AGAVLIALPAVASLLLVNLAMGVVTRAAPQLNIFAIGFPITILAGFLIILLTLPSLTARI 243 Query: 241 EHLFSEIFNLLADIIS 256 L+ I Sbjct: 244 GDFLLTALPLIERIAR 259 >UniRef50_P35537 Flagellar biosynthetic protein fliR n=20 Tax=Bacillaceae RepID=FLIR_BACSU Length = 259 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 118/255 (46%), Gaps = 3/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + + +R+ A T P+ R+VP ++G A + ++ Sbjct: 2 NSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEI 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + LA ++ L+G+ LG AAV+ AG I QMG S A +DP + P++ Sbjct: 62 DEHYMLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIG 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSN---AFLALTKAGSLIFLNG 183 + + +ALL L+ N H L+ + +F + + N + K+ + +F+ Sbjct: 122 QFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIA 181 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 ++ P++ L ++LALG++ R PQL++FV+G PL + V ++ M +I ++ Sbjct: 182 FQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNV 241 Query: 244 FSEIFNLLADIISEL 258 FS + ++++ + Sbjct: 242 FSLTIETMRNLLALV 256 >UniRef50_B2AIF6 Flagellar biosynthetic protein fliR n=24 Tax=Proteobacteria RepID=B2AIF6_CUPTR Length = 265 Score = 159 bits (403), Expect = 8e-38, Method: Composition-based stats. Identities = 112/262 (42%), Positives = 177/262 (67%), Gaps = 5/262 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M++ TS Q WL + WP R+LALI TAP+ E ++P+R K+ L+ +I ++P++ Sbjct: 1 MIEFTSAQLYGWLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSALIAMVVSPTIAQ 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V PV+SF L + + ++ IG+A GF M+ FA V+ AGEIIGLQMGLSFA+F D A+ Sbjct: 61 VPVVPVYSFGGLMIILNEVGIGLATGFVMRLVFATVQQAGEIIGLQMGLSFASFFDRAAG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLP----IGGEPLNSNAFLALTKA 175 VL+R ++++A+LLFL +GHL ++ LVD+F++LP GG PL++ +A+ +A Sbjct: 121 GQTMVLSRFLNLIAVLLFLALDGHLLMLGALVDSFNSLPIGGNPGGTPLSAGGAMAVARA 180 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 G ++F +GL+LALP+I LL LNLA+G+LNR +PQLSIF +GFP+TL+ G+ ++ +MP Sbjct: 181 GGMVFASGLLLALPMIAALLILNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQ 240 Query: 236 IAPFCEHLFSEIFNLLADIISE 257 + + +H+ + ++ + Sbjct: 241 MGSYMQHMIEAGLEAVGTVLGQ 262 >UniRef50_B8CYQ1 Flagellar biosynthetic protein fliR n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ1_HALOH Length = 259 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 133/255 (52%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV-- 63 + ++ + + R L L AP+ R P RVK+ LA+M+TF P + V Sbjct: 4 EDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVEL 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + L +++ LIG +G+ FA+++ AG+ I ++MG + A +DP S + P Sbjct: 64 PQQTVGILLDVIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAP 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 V+ + +++A+L+FL NGH L+ L +F +P+ G L S F L + +F+ Sbjct: 124 VVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMFIIA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 +ALP++ L ++ G L R PQ++IF+IG P+ + +G ++ + + F + L Sbjct: 184 FKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQDL 243 Query: 244 FSEIFNLLADIISEL 258 FSE + L II + Sbjct: 244 FSEFYRELIKIIKLM 258 >UniRef50_A1U244 Flagellar biosynthetic protein fliR n=8 Tax=Gammaproteobacteria RepID=A1U244_MARAV Length = 261 Score = 157 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 152/256 (59%), Gaps = 1/256 (0%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 + +++ W+ + WPL R+ + + PI + VP RV+LGLA+++T IAP +P Sbjct: 5 EFSADLIGQWVGQHIWPLFRLASFLMVIPIFGTQLVPARVRLGLALLMTILIAPMIPPVP 64 Query: 63 -VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V S A+ + +QQILIGI LGF + + AG++I +QMGL FA+ VDPA+ +N Sbjct: 65 QVEALSADAVVITLQQILIGIGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVN 124 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +PVLA+I + LLFL NGHL + +++F+TLPIG E L + AL S +F Sbjct: 125 VPVLAQIYTITITLLFLVMNGHLVAFEVFIESFYTLPIGLEGLGQDGVWALAHRISWMFA 184 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + ++LALP +T +L +N++ G++ R APQ++IF +GFP+ L G+ + L P + Sbjct: 185 SAMLLALPAVTAVLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFD 244 Query: 242 HLFSEIFNLLADIISE 257 E F+ + + + Sbjct: 245 QYTRETFDFMRALQGQ 260 >UniRef50_Q485K9 Flagellar biosynthetic protein fliR n=8 Tax=Alteromonadales RepID=Q485K9_COLP3 Length = 260 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 136/255 (53%), Gaps = 1/255 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ T ++ + P R+ ALI T S +++P RVK+ L + IT A+ P++P Sbjct: 1 MEFTETIINQYMADFVLPFSRISALIMTMIGFSSKTIPGRVKVFLCISITIAVMPAIPPA 60 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S L QQ++IG+ LGF AG+II +Q GL FA+ VDPAS + Sbjct: 61 SVTNLMSLNTAILLGQQMIIGVMLGFVTIMVVNTFTLAGQIIAMQSGLGFASLVDPASGM 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 N+P + + +L+ LLF +GHL + +V +F TLPI E L+S + + + G +F Sbjct: 121 NVPAIGQFFLILSSLLFWVMDGHLAYLQFIVASFDTLPIPTEHLSSIKYREVVEWGGWMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L LAL IT +L +N + G++ R APQL+IF IGFP+T+ G+ +M Sbjct: 181 ATALSLALAPITAMLLINFSFGIMTRAAPQLNIFAIGFPITMMAGLLIMWLTFGNFFTHF 240 Query: 241 EHLFSEIFNLLADII 255 E + + +I Sbjct: 241 ELQWQRALDFSCYLI 255 >UniRef50_A4BIP6 Flagellar biosynthetic protein fliR n=1 Tax=Reinekea blandensis MED297 RepID=A4BIP6_9GAMM Length = 263 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 89/256 (34%), Positives = 146/256 (57%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++T SW++ + WP R+ A P+L R +P RV+LGLA +IT+ I P LP Sbjct: 7 IELTDAMIASWVSHFMWPFFRLGAFFVIVPVLGARLIPVRVRLGLAFVITYTIYPLLPDM 66 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + ++QILIG LGF + AG+ I +QMGL FA+ VDPA+ + Sbjct: 67 PIIEAVDVQTFMIILEQILIGTTLGFLVFVILQIFILAGQTISMQMGLGFASMVDPANGV 126 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ VL++ +L L++L NGHL + ++VD+F+TLP+G ++ L++ G+ +F Sbjct: 127 SVAVLSQWYQVLVTLVYLAINGHLLTLEVVVDSFYTLPVGQGLFTVESWRLLSEFGAWLF 186 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LMLALP +T LL +NL G++ R APQL++F +GFP+T+ G+ ++ AP Sbjct: 187 RASLMLALPAVTALLLVNLTFGVMTRAAPQLNVFALGFPITMLGGLVIVWVSYAAAAPLV 246 Query: 241 EHLFSEIFNLLADIIS 256 + + + +I Sbjct: 247 RQYLNVHIDFMRALIG 262 >UniRef50_B2A364 Flagellar biosynthetic protein fliR n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A364_NATTJ Length = 257 Score = 157 bits (397), Expect = 4e-37, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 1/253 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPV 65 L L+ L R+ +I TAPI +P ++K+ ++++T P L P Sbjct: 5 TLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDY 64 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + A ++++GIA+G F++++ AG++I +QMG + A +DP +P++ Sbjct: 65 HIMNVILFAFMELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLI 124 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + +LA+++FL NGH LI + +++ LPIG +AL + S +F+ + Sbjct: 125 GQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFVLAIQ 184 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 ++ P + L N+ALG+L R PQ+++F+IGFP+ + VG + LMP +LF Sbjct: 185 VSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLGNLFQ 244 Query: 246 EIFNLLADIISEL 258 I++ L + + L Sbjct: 245 HIWDGLYNFLQAL 257 >UniRef50_Q47I14 Flagellar biosynthetic protein fliR n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I14_DECAR Length = 260 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 101/255 (39%), Positives = 151/255 (59%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + S Q +W+ + +PL R+L I+ AP+ S +P+R +L LA+ I AI P+LP Sbjct: 1 MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPP 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S LW+ QQ+LIGI +GF + F A AGE I QMGL FATF DP + Sbjct: 61 MPGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNS 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 PV+ + ++ALLLFL+ NGHL ++ L +F +P+ PL ++++L L + GS I Sbjct: 121 SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+L+LP+I L+ N+AL +L R APQL++F +GFPLTL G +A + +A Sbjct: 181 FSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP 240 Query: 240 CEHLFSEIFNLLADI 254 + +F + + Sbjct: 241 LQGIFEFGMSAMLGF 255 >UniRef50_A1WCC7 Flagellar biosynthetic protein fliR n=8 Tax=Burkholderiales RepID=A1WCC7_ACISJ Length = 256 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 104/252 (41%), Positives = 162/252 (64%), Gaps = 1/252 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ T Q ++WL+ WP LRVLAL ++AP+ S R +P R ++GLA ++ LP Sbjct: 1 MITFTEAQIMAWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLPE 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V + S A VQQ+ IG+A+GF ++ FAAV AGEIIGLQMGL+FA+F DPAS+ Sbjct: 61 QPVISLNSREAAGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPASN 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +AR +++LLF+ NGHL ++ +V +F + P+GG L + + L + G+ + Sbjct: 121 AQVSAVARFFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGASL 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + L +ALP+I LLL +NL LG+++R+APQ++I+ +GFP+TLTVG+ + A +P++ Sbjct: 181 FSSALWIALPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPMLEQP 240 Query: 240 CEHLFSEIFNLL 251 L + +L Sbjct: 241 MLALLQQSIDLF 252 >UniRef50_A5D0I0 Flagellar biosynthetic protein fliR n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0I0_PELTS Length = 254 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 1/250 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSF 68 LS+L +F LR A ++ P+ + R VP +K + + I P L +P+ ++ Sbjct: 4 LSYLAAFFLVFLRTAAFMTAGPLYALRGVPPLLKAAFCLALAAVIFPVLDLNEPLPLDAW 63 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 A ++ +G+ LG + + R AG+II Q+G S A DP +L++ Sbjct: 64 GYGLAAARETGLGLLLGTAVTMILNSFRMAGQIIDFQIGYSMAALADPQYGTQNTLLSQY 123 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +LAL+ FL +GH LI+ LV+++ +P+ N A L + S F L ++ Sbjct: 124 LYLLALVFFLVVDGHYSLIAGLVESYRLVPLNAAVFNGAAASVLLRMFSGSFAIALQVSA 183 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ +L+ +L LG L R APQL++F+ GFP+ + G+ ++ L+PL+ L I Sbjct: 184 PVLAVLVICDLTLGFLARTAPQLNVFLTGFPVKIAAGLLTLSFLIPLLGTVLRSLLGLIE 243 Query: 249 NLLADIISEL 258 L ++ L Sbjct: 244 RDLYTLMRVL 253 >UniRef50_UPI00016952B2 flagellar biosynthesis protein FliR n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016952B2 Length = 259 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 128/254 (50%), Gaps = 4/254 (1%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67 +WL L R+ A P S R+VP + K+GL+++IT + +L N+ Sbjct: 2 EWLQLLPNAMLVFCRITAFFVVVPTFSSRNVPSQFKIGLSLVITLIVFTALGMNNPVTMD 61 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L ++IL+GI LGF F AV+ AG I +QMG A +DP + + P+L Sbjct: 62 GTYLLAIFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGASAPILGN 121 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLP----IGGEPLNSNAFLALTKAGSLIFLNG 183 M+A LLFL+FNGH L+ +++++ +P + + ++ + +F Sbjct: 122 FKYMIATLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFTTMFGLA 181 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 LA P+ L +L LGLL R+APQ +IFV+G P + +G L+ L+P + E + Sbjct: 182 FQLAAPIAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELGSMFEKV 241 Query: 244 FSEIFNLLADIISE 257 F+ +F + + + Sbjct: 242 FTTMFAWMKNGLQL 255 >UniRef50_Q0AEE8 Flagellar biosynthetic protein fliR n=5 Tax=Betaproteobacteria RepID=Q0AEE8_NITEC Length = 266 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 114/258 (44%), Positives = 163/258 (63%), Gaps = 1/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M +T+EQ WL + WPL R+LAL++ P+L S+P +VKLGLA+++T IAP LP Sbjct: 1 MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S + +QQI+IG+A+GF+++ F AV AGEI GLQMGL FATF DP Sbjct: 61 LPQIDPGSGVGPIVLLQQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQS 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + ++ R +LA LLFL +GHL +I++L +F LPIG + +N +F L G+ I Sbjct: 121 GQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEI 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALP++ LL NLALG+L R APQL+IF +GFPLTL +G+ +M+ +P P Sbjct: 181 FTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV 240 Query: 240 CEHLFSEIFNLLADIISE 257 +F E F+++ + Sbjct: 241 LTQMFQESFSIMRSLAGG 258 >UniRef50_Q2RKD3 Flagellar biosynthetic protein fliR n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKD3_MOOTA Length = 255 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 142/252 (56%), Gaps = 1/252 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFS 67 +L+ ++F L+R A TAP R VP VK GL ++ + P LP V S Sbjct: 3 YLTQAEIFFLVLVRTTAFFVTAPFFGIRGVPTMVKAGLGFLVALLLLPVLPADQPVFNSS 62 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + L G+ALG+ F+A++ AG+++ + MGL+ AT DP + + ++ + Sbjct: 63 WVYALAVLNESLAGLALGYLASLIFSAIQMAGQLLDIHMGLAMATLFDPQNAASTTIMGQ 122 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +L LLLF +GH L+ L ++F LP+GG + N A+ K + F L +A Sbjct: 123 FFAILGLLLFFQLDGHHTLLLALQESFRLLPLGGVHFDGNLLWAVVKLFAGTFALALQIA 182 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PLI +LL +LAL L+ R PQL++F++GFPL + +G+ +M AL+PL+A ++FS++ Sbjct: 183 APLIAVLLIADLALSLVARTVPQLNVFILGFPLKVGLGLLVMIALLPLLATVFSNIFSQM 242 Query: 248 FNLLADIISELP 259 + LA +I P Sbjct: 243 EHDLALLIRGWP 254 >UniRef50_Q4ZQU8 Flagellar biosynthetic protein fliR n=20 Tax=Pseudomonas RepID=Q4ZQU8_PSEU2 Length = 261 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 98/258 (37%), Positives = 152/258 (58%), Gaps = 2/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +T Q +W+ + PL R++AL+ T PI+ VP+RV++ LA+ IT +AP+LPA Sbjct: 4 MLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPA 63 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V AL L +QI+IG +G ++Q F AG+II QMG+ FA+ VDP + Sbjct: 64 MPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNG 123 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++ + + ML LLFL NGHL ++ +LV++F T+P+G L +N + L + Sbjct: 124 VSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWE-LANGLGWV 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +GL L LP IT LL +N+A G++ R APQL+IF IGFPLTL +G+ ++ M + Sbjct: 183 LASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQ 242 Query: 240 CEHLFSEIFNLLADIISE 257 + + ++ L D++ Sbjct: 243 YQPIATQALQALRDMVRA 260 >UniRef50_B5EEM8 Flagellar biosynthetic protein fliR n=2 Tax=Geobacter RepID=B5EEM8_GEOBB Length = 261 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 135/260 (51%), Gaps = 2/260 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q L+ L L RV L S P+ R VP RVK+GL +T I P + Sbjct: 1 MFQNLPLTSLADLIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKP 60 Query: 61 NDVPVFS--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + VP S + L +Q+ LIG+ LG QF FAAV G+++G QMG+S A DPA+ Sbjct: 61 HVVPNVSDSLGLMLLVLQETLIGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPAT 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 N+P +A LA LLFL FN H + I +VD++ +P+G ++ L + + Sbjct: 121 QNNVPTMAIFQGALATLLFLAFNVHEYFIRGIVDSYRVVPLGAWHVSGGLLKFLVETSTG 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 IF+ + LA P+ LL ++ALG++ R P +++F++ PL + +G ++ +P+ Sbjct: 181 IFIIAIKLAAPVSVALLATSVALGIVARSFPAMNVFMVSMPLNIGIGFVILGISLPVFVR 240 Query: 239 FCEHLFSEIFNLLADIISEL 258 + F ++ + + + L Sbjct: 241 VLQGSFGQVVDQMRTLFRLL 260 >UniRef50_C8WYW7 Flagellar biosynthetic protein fliR n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW7_DESRD Length = 260 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 + +RV A+I + P+LS P R++ GLA+++ I P++ D+ Sbjct: 4 EALLSQHWPSFLLCFIRVAAIIGSMPVLSGGQTPARLRAGLALVLAVIIFPAVDGTIPDI 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 L Q++L+G+ LGF + F A + G I+G QMG + A +DP S + Sbjct: 64 NFAPLRLFVLGSQEVLLGLMLGFIGRLLFLAAQFGGTILGFQMGFAAANILDPQSQQQIQ 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++++ ++LA L+FL +GH + L +F +P GG +A ++ +F+ G Sbjct: 124 LMSQFQNVLASLVFLAVDGHHVFLRSLARSFEVVPPGGGLHLQDAVPSMVAMTGEMFVLG 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 L L P+ +L+ + LG+++R+ PQL+ F++ FP+ + V + I Sbjct: 184 LQLTAPIYVILILSDFILGIMSRIFPQLNAFMLKFPINIGVAFFFLGLSAEFIVSILISE 243 Query: 244 FSEIFNLLADIISEL 258 F+ + L + + Sbjct: 244 FNGLAQRLVEFFELV 258 >UniRef50_A6W0V6 Flagellar biosynthetic protein fliR n=2 Tax=Marinomonas RepID=A6W0V6_MARMS Length = 260 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 124/253 (49%), Gaps = 1/253 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML++ +Q LS + P R+ A P+ R V RV++ + ++ I P + Sbjct: 1 MLELHPDQLLSLTISFLLPFFRIGAFFMALPLFGSRLVSPRVRIAFSFLVAIIITPVIDV 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + L +Q++IG LGF + F AG++ ++ GL FA DPA+ + Sbjct: 61 PNYDPISPAYIVLIAEQLVIGFVLGFVVTILFQLFSLAGQLAAMKAGLGFAMSNDPANGI 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ L + + L FL NGHL +I L ++F+ PIG +S + L G +F Sbjct: 121 SVATLGQYYLSMVALAFLGTNGHLVMIEYLAESFNYWPIGSG-FDSQRYWQLVLLGGWMF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L++ LPL +L +NL+ G++ + +PQL++F +GFP+ + + ++ Sbjct: 180 EKALLIVLPLAVAVLVINLSFGVVAKASPQLNVFALGFPIIMLFSLFFFWIMLDDFLNIY 239 Query: 241 EHLFSEIFNLLAD 253 F E+ + + + Sbjct: 240 LLFFGEMIDWMKN 252 >UniRef50_Q21IP9 Flagellar biosynthetic protein fliR n=2 Tax=Alteromonadales RepID=Q21IP9_SACD2 Length = 261 Score = 152 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 144/255 (56%), Gaps = 1/255 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND- 62 T + L YF P R+ A+ PIL + V RV+LGLA ++T + P L + Sbjct: 6 FTEQDLGLLLQQYFLPFCRIGAMFLAMPILGSQLVSPRVRLGLAFIVTLMVVPMLGSIPK 65 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 V S Q+IL+G+A G+ Q AF AG++I ++MGL FA+ DP + + Sbjct: 66 VSGLSVQTFIYISQEILLGLAAGYCFQVAFQVFVLAGQLIAMKMGLGFASMNDPVNGVQT 125 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 +++ ML L+F++ NGHL +I++LV++F T P GG ++N + G+ +F Sbjct: 126 TAISQFYLMLVTLMFVSVNGHLVMINMLVESFVTFPPGGFIFSTNTMWKIANVGTWLFAA 185 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 GL++ALP++T LL +N+A G+++R APQL+IF IGFP TL G+ ++ + E Sbjct: 186 GLLMALPVLTALLFINIAFGIMSRAAPQLNIFAIGFPFTLLCGLLMIWLGLVTFDSNFES 245 Query: 243 LFSEIFNLLADIISE 257 + + F LL ++ + Sbjct: 246 VMDDGFILLHQVLHQ 260 >UniRef50_C6BYP0 Flagellar biosynthetic protein fliR n=4 Tax=Desulfovibrionales RepID=C6BYP0_DESAD Length = 267 Score = 152 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFSFFA 70 L ++ L RV ++ P S+PK VK L +++T I P + + +P + Sbjct: 11 LMSFYLTLFRVSIVLFLLPFFGGNSIPKTVKAALTIVLTLGIWPHVTFEGSLMPASPYNI 70 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + + ++++G+ +G ++ FAA++T G +IG+QMG S +DP + N V A + Sbjct: 71 ALMILGEMVLGLVMGISVHVMFAAIQTGGNLIGVQMGFSMVNVLDPLTGTNEAVTAHFLY 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 M A+L+FL+ NGHL+L+S +V++F +P G ++S + +F+ + +A P+ Sbjct: 131 MCAILVFLSINGHLYLMSAMVESFKYIPPGQIFISSTLTSQIMSISKDLFVLAVKVASPI 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 I + ++L L L+++MAPQ+++ ++GFPL + G +++ + +++ +++ Sbjct: 191 IATIFVVDLGLALISKMAPQMNVLMLGFPLKILAGFFVLSLVFTVLSLHVGEFVADLPKY 250 Query: 251 LADIISE 257 L II Sbjct: 251 LLSIIKA 257 >UniRef50_A1HN22 Flagellar biosynthetic protein fliR n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN22_9FIRM Length = 260 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 131/254 (51%), Gaps = 3/254 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL---PAN 61 S L + RV +++TAPIL R++P K G A+++++ + P + Sbjct: 3 VITIMQSQLGFFLLIFTRVTGILTTAPILGSRNIPVYTKAGFALILSYILTPIVVQRSHI 62 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 VP ++L + ++LIG+ LG+ F AV+ AG+++ +Q+G +DP S Sbjct: 63 IVPDQFGAYVFLVIGELLIGLILGYISSMIFYAVQMAGQLLDMQIGFGIVNIIDPQSGQQ 122 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +P++ + +LL+F NGH L+S L +F T+P+G + + + Sbjct: 123 LPLIGNFKYIFSLLVFFATNGHHILLSALFTSFKTVPVGAAVFRPQLADLVIDITFSVLI 182 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 L ++LP++ + ++A+G+L R+ PQ++IF++G P + VGI ++A +P E Sbjct: 183 IALKISLPILVAIFLTDIAMGILARIMPQMNIFIVGIPGKIIVGIFMLALTLPFYITLLE 242 Query: 242 HLFSEIFNLLADII 255 FS ++ + ++ Sbjct: 243 VGFSAMYKDIYRLL 256 >UniRef50_D0KYN9 Flagellar biosynthetic protein fliR n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN9_HALNC Length = 258 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 151/257 (58%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + ++ + + W+ Y W L+RV AL+ PI R VPKR ++ A++ + IAP+LP Sbjct: 1 MILSLAEVMGWVGSYVWVLVRVAALLMVVPIFGARGVPKRWRILAALVFSLIIAPTLPPV 60 Query: 62 D-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + S + L QQI+IG+ +GF + ++ AGE + L MGL FA VDP + + Sbjct: 61 PTIDPLSVAGILLVAQQIIIGVTMGFVLGLIVSSFVVAGESMALGMGLGFAQTVDPQNGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++P++++ + ++A LLF++ +G ++ +L D+F LPI L+ F + G +F Sbjct: 121 SVPIVSQFLTVVATLLFISLDGPALIVKMLADSFVWLPIAPVGLSPETFWRVVGFGQSMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +N +++ALP+I LL +NLA+G++ R APQL+IF IGFP TL +G L+ P P Sbjct: 181 INAILIALPVIISLLMVNLAMGVITRAAPQLNIFSIGFPATLLIGFFLILVSSPTWVPIL 240 Query: 241 EHLFSEIFNLLADIISE 257 EH + ++D++ + Sbjct: 241 EHFLQQTLQFISDLLRQ 257 >UniRef50_A1WUA7 Flagellar biosynthetic protein fliR n=3 Tax=Ectothiorhodospiraceae RepID=A1WUA7_HALHL Length = 263 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 156/257 (60%), Gaps = 2/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-A 60 ++++S + +W+ + +PL+R+ A AP+ VP +V++ + + +T A+ P++ Sbjct: 1 MEISSAEAAAWVGTFMYPLMRIGAAALVAPVFGNDMVPLQVRVFIGVALTIAVLPAVGEV 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L +AVQ+IL+G+ +G + A AGE I L MGL FAT VDP + + Sbjct: 61 PPVDPLSPDGLLIAVQEILVGLTIGMVLALALNTAVIAGESIALAMGLGFATMVDPQTGM 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++PV+++++ + LLFL GHL LI LL D+F +PIG L+ + F + G+ ++ Sbjct: 121 SVPVISQLLLTIVTLLFLAVGGHLMLIQLLADSFSAVPIGEIVLDRDVFWGVAAWGTQMY 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM-AALMPLIAPF 239 +++ALPL+T+LL +NL+LG++ R APQ+++F +G PLT+ VG LM ++P + Sbjct: 181 AGAVLIALPLVTVLLVINLSLGVMTRAAPQMNVFSVGLPLTILVGGVLMPILVLPALPAR 240 Query: 240 CEHLFSEIFNLLADIIS 256 ++SE +N + ++ Sbjct: 241 MAMMWSEAYNTIGQLLG 257 >UniRef50_Q1QW39 Flagellar biosynthetic protein fliR n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QW39_CHRSD Length = 261 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 118/259 (45%), Positives = 172/259 (66%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVT Q WL L+FWP +R+LA ++ +PI ++ VP++ + L ++ FAI P+LP Sbjct: 1 MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPP 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 P+ S L + +Q++LIGIALG ++ A V+ AGE IGLQMGL+FATF P Sbjct: 61 MPDTPIVSIGGLGILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +M VL+RI M+ LL+FL NGHL + +L ++F TLP+GG ++ +A + + G I Sbjct: 121 NSM-VLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEI 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F +G+++ALPLI LL +NL LG+LNR +PQLSIF IGFP+TLT G+ L+ LMP + F Sbjct: 180 FTSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRF 239 Query: 240 CEHLFSEIFNLLADIISEL 258 E LFS F+ + +++ L Sbjct: 240 LEILFSNSFSTMQEVVQRL 258 >UniRef50_Q2RZE7 Flagellar biosynthetic protein fliR n=2 Tax=Rhodothermaceae RepID=Q2RZE7_SALRD Length = 258 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 3/251 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFS 67 ++ +RV L+ AP ++++P RV++ ++++ +++A P + Sbjct: 6 TEYILRVLLVFVRVSGLMLAAPFFQQKTIPVRVRVLASVVLAYSLAGFATGPLPEHVTHD 65 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + + G+ +GFT + F AV AG I+G QM LS A +P S + L + Sbjct: 66 VGFMLVVLVEAGTGLVMGFTARIIFWAVSFAGTIMGYQMALSLAQTYNPISGTSSNPLGQ 125 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 I+ LL FL +GH +L+ L +F +P+GG L+ + F + LA Sbjct: 126 ILSYTFLLAFLLADGHHFLLRALAQSFEVVPLGGAELSGAG-PPMLGWMGDFFRLAVRLA 184 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P + +L ++ALG+ R+ PQ ++F + P L VGI + + PF LF EI Sbjct: 185 APFLVILFLTDIALGIFARLVPQANLFTLSLPAKLLVGIGIFLVFIQGAVPFFPSLFGEI 244 Query: 248 FNLLADIISEL 258 ++ +++ + Sbjct: 245 EQMVHEVLRII 255 >UniRef50_Q3V7I9 Flagellar biosynthetic protein fliR n=7 Tax=Vibrionaceae RepID=Q3V7I9_PHOPR Length = 259 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 143/260 (55%), Gaps = 2/260 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +++ Q +WL +WP R+ A + P+ ++P +V++GLA I+ AP +P Sbjct: 1 MLDISAAQLTAWLGQIWWPFFRLGAAMLMMPVFGGSTIPTQVRVGLAFCISLLAAPLMPP 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S AL L VQQ++IG +G ++ F T G+I+ +QMGL A DP + Sbjct: 61 MPSVDPLSLDALILGVQQMIIGGIMGLMLELLFGVFTTMGQILSMQMGLGMAMSNDPING 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++P L + + LLLFL +GHL + ++V +F+ P+G P + +A ++ + Sbjct: 121 VSIPTLGKYYQLYILLLFLALDGHLVALDVVVQSFNVWPVGEMP-SQDALYSVVMRLGWL 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +LALP + +L +N A G++NR APQL++F +GFP+T+ +G+ + I Sbjct: 180 IAAAFLLALPAVCAMLLVNGAFGMMNRAAPQLNVFALGFPMTMLLGLMCLLITTSSIPEN 239 Query: 240 CEHLFSEIFNLLADIISELP 259 L SE ++A++ + P Sbjct: 240 FTRLCSETLAMMANLEAVQP 259 >UniRef50_UPI0001BC2FF2 flagellar biosynthetic protein FliR n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2FF2 Length = 258 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 1/256 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 E L++ ++ L+R+ + + TAP + + P+R KLGLA I+ + +P + Sbjct: 2 FNYEVALNYWEVFLLILVRIASFVYTAPFFNMANTPQRTKLGLAFFISLIVFTLVPDRTL 61 Query: 64 PVFS-FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 S L +++ ++G+ LGF+ + AG II +GLS A+ DP Sbjct: 62 EYSSILEYAILVIKESVVGLLLGFSCMVCVQTITFAGNIIDSNIGLSMASEYDPTLRDQT 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 V + LL + + +LIS +VDT+ +PI G +N + + ++ S F+ Sbjct: 122 TVSGTLYYYTVFLLLMVSGLYQFLISAIVDTYTIIPINGLSVNPSLYSSVVTLVSDYFII 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 G +ALP+ LL +N LG+L ++A QL++F +G + + G+ +M + L+ Sbjct: 182 GFRIALPVFVSLLIVNCVLGILAKVASQLNMFAVGIQIKILAGLVIMFVTVGLLPQIANF 241 Query: 243 LFSEIFNLLADIISEL 258 ++ I + I L Sbjct: 242 IYQNIKAAVKLIAGGL 257 >UniRef50_B8FTQ3 Flagellar biosynthetic protein fliR n=2 Tax=Desulfitobacterium hafniense RepID=B8FTQ3_DESHD Length = 260 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 3/255 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDV 63 +E L L+ L R +I AP+ R VP VKLGLA+ I+ + P + + Sbjct: 4 AEFLQWNLTLFLLILSRWAGMIMLAPVFGARGVPAMVKLGLAVSISIILYPLIMAAGPQI 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + L +++I++G+ +GF + A + AG++I +QMG + + +DP + Sbjct: 64 PSETLPYAALLIKEIVVGLVIGFVIYAITAVLEGAGQLIDMQMGFNMSGAIDPIFGVQSA 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++ +LA++L L N H +LI+ +V ++ +PI L IF Sbjct: 124 MMGNFQMILAIMLLLATNSHHYLIAAMVKSYTYVPINPGALPQG-LNYYIFLIREIFTLS 182 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + LALP+I L+ ++ +GLL R PQ++IF + FP+ + G +++ + L Sbjct: 183 VQLALPVIGALVLTDIGVGLLMRTVPQMNIFTVIFPVKIIFGFTILFLGIGFFGETVNML 242 Query: 244 FSEIFNLLADIISEL 258 F L ++ Sbjct: 243 FERAMTWLLELYKGW 257 >UniRef50_B2UJU2 Flagellar biosynthetic protein fliR n=6 Tax=Ralstonia RepID=B2UJU2_RALPJ Length = 262 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 151/258 (58%), Gaps = 1/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+Q T+ Q W+ +Y+WPL+RVLA I+ AP + VP +K+ L ++IT A+AP LP Sbjct: 1 MIQFTAAQLNGWIAMYWWPLVRVLAFIAMAPPFANTEVPTSIKIALGVIITVALAPMLPV 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V V S+ LW+ + Q +IG++LGF +Q F+A+ AGE++ +QMGL FA+ +DP Sbjct: 61 PVGVSVGSYEGLWITLLQAVIGLSLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPQQT 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + +L R + + A+ F+ +GHL L+ L D+F LP+ PL + + L G+++ Sbjct: 121 ESSMLLGRFISLTAITAFIAGDGHLVLLHALFDSFTALPVSAAPLANPGWQTLAGGGTMV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + +ALP+I ++L +NL +L+R A L+ F +G TL VG+ L+ +M +AP Sbjct: 181 FALAVRIALPIIAIMLVVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPV 240 Query: 240 CEHLFSEIFNLLADIISE 257 E + L + Sbjct: 241 VERSVMDALELGGRAFGQ 258 >UniRef50_Q12PK2 Flagellar biosynthetic protein fliR n=8 Tax=Gammaproteobacteria RepID=Q12PK2_SHEDO Length = 267 Score = 149 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 145/257 (56%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-A 60 +++ ++ + Y WPL R+ +++ + + P RV+L LA+ TFAIAP LP Sbjct: 1 MEILFDEISQTIAAYLWPLFRISSMLMIMAVFGANTTPSRVRLMLAVAFTFAIAPVLPEI 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +V +F+F A+++ +QQILIG +GF G+IIG+Q L FA+ VDP S Sbjct: 61 KNVELFAFSAVFITLQQILIGAVMGFVTLMLMQTFVLTGQIIGMQTSLGFASMVDPGSGE 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 PV+ +LA L+FL+ +GHL + ++V +F ++P+ + + + L + G +F Sbjct: 121 QTPVVGNFFLLLATLIFLSIDGHLLMFRMIVASFESIPVSNQGIEIANYKILAEWGGYMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L +++ I LL +NL+ G++ R APQL+IF IGFP+T+ G+ ++ + I Sbjct: 181 GAALTMSMSAIVALLLINLSFGVMTRAAPQLNIFSIGFPVTMVSGLLILWLTLGPIMAHF 240 Query: 241 EHLFSEIFNLLADIISE 257 + ++ L+ D++S Sbjct: 241 DEVWYAAQVLMCDLLSL 257 >UniRef50_C6D2V4 Flagellar biosynthetic protein fliR n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2V4_PAESJ Length = 264 Score = 149 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 134/257 (52%), Gaps = 5/257 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPV 65 +Q + + ++ R+ + AP+ + R VP K+GL ++ + + Sbjct: 2 DQIVEYFPIFLLIFCRMTSFFVVAPLFNMRGVPSTFKIGLGFFLSLIVFMTYGLKEQTVP 61 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + +++LIG+ +G+ + V+TAG ++ +Q+G + + +DP + ++ P+L Sbjct: 62 MDAEYILYIFREVLIGLLMGYIVYLFMTVVQTAGALMDMQIGFAMSNVIDPMTGVSAPLL 121 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN----SNAFLALTKAGSLIFL 181 ML +++FL NGH +L++ L+D++ +P+ E + + L++A FL Sbjct: 122 GNFKYMLLIMVFLAVNGHHYLLTGLMDSYKWMPLSNELFSRIYDGSITDFLSRAVGNAFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + +A PL+ + ++ LG L + APQ ++FVIG PL L +G+ L+ ++P I+ E Sbjct: 182 LAMQVAAPLVIAMFLTDVGLGFLAKTAPQYNVFVIGIPLKLLLGLGLLILVLPGISAIFE 241 Query: 242 HLFSEIFNLLADIISEL 258 LF+ +F+ L + + Sbjct: 242 RLFAIMFDNLEQLFGIV 258 >UniRef50_B9NJ47 Predicted protein n=6 Tax=cellular organisms RepID=B9NJ47_POPTR Length = 314 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 156/251 (62%), Gaps = 1/251 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + Q ++WL+ WP LRVLA+ S AP+ S+R +P R+K+GLA ++ P L Sbjct: 60 ITFSEAQLVAWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVLGDQ 119 Query: 62 DVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S AL +QQ+ +G+A+GF ++ FAAV AGE++GLQMGL+FA+F DP ++ Sbjct: 120 PVIGINSPQALGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNA 179 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + +AR M ++ LLF+ NGHL ++ ++ ++ P+ G L + + L + G+ +F Sbjct: 180 QLSAVARFMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVF 239 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +ALP++ +LL +NL LG+++R+APQ++I+ + FP+TLTV ++ + A +PL+ Sbjct: 240 ASAFWIALPMVAMLLFVNLVLGIISRVAPQMNIYAVXFPVTLTVXLTGLMATLPLLEQPL 299 Query: 241 EHLFSEIFNLL 251 L + Sbjct: 300 VALLQRGIAVF 310 >UniRef50_Q2ITJ3 Flagellar biosynthetic protein fliR n=15 Tax=Bradyrhizobiaceae RepID=Q2ITJ3_RHOP2 Length = 283 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 2/252 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ + + RV A++ P L E ++P R+KL +A+ +T I P Sbjct: 29 MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNA 88 Query: 62 DVPVFS--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 S L L +Q+I+IGI LG T + +A++ AG +I Q+GL F T VDP Sbjct: 89 YQVDMSSLTPLLVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQG 148 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++ + +L + + + H +I L D++ G + + TKA + Sbjct: 149 QQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAAS 208 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G+ LA P + L N+ LG+L R+ PQ+ ++ +G PL++ +G + AA++ + Sbjct: 209 FKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT 268 Query: 240 CEHLFSEIFNLL 251 F + L Sbjct: 269 FLAYFGGVMQEL 280 >UniRef50_Q1IR58 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR58_ACIBL Length = 253 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 125/251 (49%), Gaps = 1/251 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E W+ R+ AL+ AP S ++P RVK GL +++T + PS+ + V + Sbjct: 2 EPLEVWVQSIVLVGTRIAALVLFAPFFSHAAIPPRVKGGLVVLLTILLYPSVISATV-LS 60 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + + + + IG+ +G + F AV+ AG+ +G+++GLS + +DP + + PVL+ Sbjct: 61 ASEVVGVVLHETFIGMLIGLSSVLVFEAVQFAGQCLGIEVGLSLVSVLDPQTQADSPVLS 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 ++ + LLLFL N H WL+ L D++ +P G L L + +IF G+ + Sbjct: 121 VLLQTILLLLFLDLNVHHWLLRALADSYRLIPPGAGRLTGVVVQDLFQQAGMIFALGVQI 180 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 A P++ L ++ L + +PQ+ + ++G P+ +G++ + A + + F+ Sbjct: 181 AAPVLAATLLADIVFAFLAKASPQMPVLLLGMPVKFVLGLTTLWAGLRFWPVIFDRNFAL 240 Query: 247 IFNLLADIISE 257 + Sbjct: 241 ALQSGERWLHL 251 >UniRef50_A8U5W1 Flagellar biosynthetic protein fliR n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5W1_9LACT Length = 250 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 118/247 (47%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 L +RV + I +P S + +P K+ L+M IT A ++P + + Sbjct: 4 QLQTIILIFIRVTSFIVVSPGFSFKGLPSVAKIALSMGITLAAYSAVPVMEQEAGTVLFA 63 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L ++++L+GIALGF + F AV AG + Q+G S DP+ +N+ +I Sbjct: 64 VLVIKEVLLGIALGFITKLFFTAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGKIYYW 123 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L++ +F N H +I LV +F T+PI L + K +IF +A+P++ Sbjct: 124 LSMCVFYLTNLHHVVIKSLVKSFTTVPISNSNLGDFGVEGMMKLLGIIFEIAFNIAVPMM 183 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + L + LGL++R PQ+++ ++G PL + ++ L+P + + + + Sbjct: 184 IVALLTEVILGLISRSVPQINVLILGMPLKIVASFVMILVLLPTLVKNIQTTLPLMVKYM 243 Query: 252 ADIISEL 258 + + L Sbjct: 244 NEFMQSL 250 >UniRef50_A5F6D9 Flagellar biosynthetic protein fliR n=62 Tax=Vibrionales RepID=A5F6D9_VIBC3 Length = 260 Score = 147 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 87/258 (33%), Positives = 142/258 (55%), Gaps = 2/258 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ + L ++ YFWP R+ A++ + R VP RV+L L + +TFA+ P++PA Sbjct: 1 MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60 Query: 62 D--VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + + S + +QI+IG+A+G QF G+I+G+Q L FA+ VDPA+ Sbjct: 61 PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 N P+L ++ +LA L FL +GHL +I L+V +F +LPIG L + F L ++ Sbjct: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F L ++L I LLT+NL+ G++ R APQL+IF +GF L VG+ L ++ + Sbjct: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240 Query: 240 CEHLFSEIFNLLADIISE 257 + + E + +I Sbjct: 241 YDIYWQEAEEQVCRLIRL 258 >UniRef50_B9Z788 Flagellar biosynthetic protein fliR n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z788_9NEIS Length = 258 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 2/258 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M ++ Q + ++L+ WP R++ ++ P+ S RS P R K G A+++T + P LP Sbjct: 1 MFPISDLQINALVSLFVWPFARIMGVLLADPLFSSRSAPARFKAGFALLLTLLLVPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 +PV S + + VQQ+LIG+ALG M+ AV AG ++G QMGL FA+F DP + Sbjct: 61 QPAIPVVSAEGVAVLVQQLLIGLALGLVMRVVITAVEMAGFVMGTQMGLGFASFYDPINA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P +ARI+ + LLFL GH +I +L+++F TLPIG L + AL + G I Sbjct: 121 AQVPTIARILTLFTFLLFLLMGGHQVVIEILLESFRTLPIG-MTLPPDRLKALAEWGGHI 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL LALP++ LL NLA+G++ R +PQ +IF GFPLTL VG + + +PL+ P Sbjct: 180 FNWGLWLALPVVAALLVTNLAIGVMTRASPQFNIFTFGFPLTLLVGFAALYLSVPLMVPA 239 Query: 240 CEHLFSEIFNLLADIISE 257 E ++ E F + ++ Sbjct: 240 IESIYREAFAFMQGMLKS 257 >UniRef50_C0ZF83 Flagellar biosynthetic protein fliR n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF83_BREBN Length = 260 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 131/255 (51%), Gaps = 3/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 +L +L ++ +R+ A TAP S R VP + K+ LA +I SLP Sbjct: 2 NLFLMYLPIFMLVFVRMSAFFVTAPFFSIRGVPNQFKIALAFIIAVISFQSLPVQGEIPM 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + +++ L+G+ LG+ + F A++ AG ++ +QMGL+ A +DP + +PV Sbjct: 62 DLTFVMYVIKEALVGVILGYICEMMFIAIQVAGGLMDMQMGLAMANVIDPKTGAYIPVTG 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG---GEPLNSNAFLALTKAGSLIFLNG 183 ++LA+L F + +GH LI ++ ++ +P+ + N + K +F + Sbjct: 122 NFKNILAVLYFFSIDGHHMLIRGVISSYQVIPVDIMWAAFGSENVMMTAVKTFLTMFTSA 181 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 M+A P++ L ++L+LG++ + PQ +IFV+G P+ L G L+ +MP L Sbjct: 182 FMIAAPIVVALFLVDLSLGIIAKSVPQFNIFVVGLPIKLLAGFLLLIVVMPAFLLTLNGL 241 Query: 244 FSEIFNLLADIISEL 258 F +F LA+++ L Sbjct: 242 FGNMFRALAEMMKSL 256 >UniRef50_A1K939 Flagellar biosynthetic protein fliR n=2 Tax=Rhodocyclaceae RepID=A1K939_AZOSB Length = 270 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 156/257 (60%), Gaps = 1/257 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKL-GLAMMITFAIAPSLP 59 M+ VTS Q +WL +PL R+L L +TAP+ S R++P R++L + + Sbjct: 1 MISVTSAQLDAWLAALMFPLARLLGLFATAPVFSNRAIPVRIRLTMALGIALALLPALPA 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 P L + VQQ+ IGIA+GF ++ FAA+ AG +IG+QMGLSFA F DP + Sbjct: 61 MPQTPPGGGIGLLVMVQQMFIGIAIGFMIRIVFAAIDMAGSLIGMQMGLSFAVFFDPDAG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 VL+ + ++A LLFL+ NGHL L++ L+ +F LPIG ++++ + + +AG+ + Sbjct: 121 GQTAVLSDFLSLVATLLFLSINGHLMLVAALIRSFEWLPIGLNVVSASGWAYIARAGAAV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL+L+LP++ +LL N+ALG+L R APQL++F IGFP+TL +G + +M P Sbjct: 181 FATGLLLSLPIVAVLLVANIALGILTRAAPQLNLFAIGFPVTLAMGFMGLILIMTNFGPV 240 Query: 240 CEHLFSEIFNLLADIIS 256 LF F+ ++ ++ Sbjct: 241 VVSLFEHGFDTISAMLE 257 >UniRef50_Q7NTD4 Flagellar biosynthetic protein fliR n=1 Tax=Chromobacterium violaceum RepID=Q7NTD4_CHRVO Length = 252 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 148/257 (57%), Gaps = 6/257 (2%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML ++ Q +W++++ WP R++ L P+ + R VP+R K A+++T + A Sbjct: 1 MLAISDIQINAWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTV-----ILA 55 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +P + + VQQ+LIG+++GF M+ +AV G IIG Q GL FA F DP Sbjct: 56 PLLPPLPAEGIAILVQQLLIGLSMGFVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAA 115 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PVL++++ + LFL F+GH ++ L +F LPIG P+ + ALT G+ +F Sbjct: 116 QVPVLSQMLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIG-MPMPAQGIKALTLWGAHLF 174 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 G+ LA+P+I LL NLA+G++ R APQ +IF GFPLT+ +G + +P++ P Sbjct: 175 EWGVWLAMPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVI 234 Query: 241 EHLFSEIFNLLADIISE 257 E ++ F+++ ++ Sbjct: 235 ERMYQAGFDMMLRMLQA 251 >UniRef50_C8W1H1 Flagellar biosynthetic protein fliR n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1H1_DESAS Length = 255 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 141/251 (56%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN--DVPVFS 67 + L ++F +R+ A + TAP R++P +K+G ++++ + P + + VP Sbjct: 4 MDLLVVFFLVFIRITAFMMTAPFFEYRNIPNLLKIGFSLLLAGIVFPVIKTSGFSVPGGV 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + +G+ LG F F +R AG++I LQ+G + A DP S + ++AR Sbjct: 64 LGYILAVMAEAGVGLMLGLIASFIFHGIRMAGQLIDLQIGFAMAMVFDPLSEMQTTIIAR 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 +++LAL+ FL NGH +LI LV ++ +P+ + S L + K S +F ++ Sbjct: 124 FLNLLALIFFLNVNGHYYLIESLVKSYDLVPLTAMAIKSGVVLTVVKFFSGMFALAFQIS 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P+I +L+ ++L+LG ++R PQL++F++GFP+ + VGI ++ ++P++ + +F + Sbjct: 184 APIIAVLVIIDLSLGFVSRTVPQLNVFMLGFPVKIVVGILTLSVVVPVLGTLLQDVFKTM 243 Query: 248 FNLLADIISEL 258 N + ++ L Sbjct: 244 HNNMLILLRGL 254 >UniRef50_Q1N2V1 Flagellar biosynthetic protein fliR n=1 Tax=Bermanella marisrubri RepID=Q1N2V1_9GAMM Length = 262 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 140/255 (54%), Gaps = 1/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 +L + S + SW++ Y WP R P+ R V RV+L LA + + P LP Sbjct: 8 LLDINSAEVSSWVSRYLWPFFRFAGFFMVLPLFGTRLVTARVRLFLAFFTSILVTPLLPP 67 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S + + QQILIGIALGF ++ G++I +Q GL A VDP + Sbjct: 68 MPVIDAVSVQTMVIIAQQILIGIALGFVVEILMQIFILCGQLIAMQTGLGMAMMVDPTNG 127 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +N+ V+A+ + A LLF+T NGHL I +L D+F T+P+G +++N ++ + + Sbjct: 128 VNVAVVAQWFLIFANLLFITLNGHLVAIEILADSFFTIPVGEGTISTNVMWSIVELAHWM 187 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F ++LALP IT +L +N+A G++ R+APQL+IF +GFP+T+ +G+ ++ Sbjct: 188 FSAAIVLALPAITSMLVVNIAFGVMARLAPQLNIFAVGFPVTMLLGLIVLWIAFSGFGAE 247 Query: 240 CEHLFSEIFNLLADI 254 L +E+F + Sbjct: 248 FGRLLTELFYFMRSF 262 >UniRef50_A6GTX6 Flagellar biosynthetic protein fliR n=1 Tax=Limnobacter sp. MED105 RepID=A6GTX6_9BURK Length = 254 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 155/248 (62%), Gaps = 2/248 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + EQ W+ + WP +R+LA+++TAP+ R+V +R ++GLA +I + P LPA Sbjct: 1 MVPINGEQLEIWIASFLWPFIRILAILATAPVFDNRTVQRRTRVGLAALIAILMMPLLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + S A+ + +QQILIG+A+GF+M+ FAA AG+++GLQMGL+FA F+DPA Sbjct: 61 PPV-LSSAQAIPVLIQQILIGVAMGFSMRLVFAAFEMAGDLLGLQMGLAFAQFIDPARGT 119 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++ + +LA+L FL +GHL +I+ +V +F +PI N+ ++ AGS++F Sbjct: 120 QTPLIGSFLGVLAMLTFLVIDGHLLVIAAVVQSFELIPISANLAVVNS-QSIAMAGSIMF 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L ++LP++ +L N+ LG+L R APQL++ IGF +T+ VG+ ++ +P Sbjct: 179 MLALQISLPVMAAVLISNIVLGILARAAPQLNVMSIGFSITIGVGLWILWVSLPYFIAGI 238 Query: 241 EHLFSEIF 248 + + Sbjct: 239 DGAIGRLL 246 >UniRef50_B3EAW1 Flagellar biosynthetic protein fliR n=7 Tax=Desulfuromonadales RepID=B3EAW1_GEOLS Length = 265 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 134/248 (54%), Gaps = 2/248 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSFFA 70 + L+ L R+ L + P+ + +P R+K+ + IT P L +P +F Sbjct: 14 VFLFALILCRIGGLFAALPVFGGKRLPTRIKIAAVLAITLVCLPVLKITPPPLPGDAFTL 73 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L ++++LIG+ L F Q FAAV +G+IIGLQMG S ++ +DP+ +++ + Sbjct: 74 GLLVMREMLIGLTLAFITQIIFAAVEFSGQIIGLQMGFSISSVLDPSMGTQTQIMSVVQS 133 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +LA L FL+ N H IS +VD+F +P+GG ++ L A S +F+ G+ LA P+ Sbjct: 134 LLATLFFLSLNIHHVFISAIVDSFTVIPLGGWKMSEALIHFLVNATSEVFILGIRLAAPV 193 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + LL ++ LG++ R PQ+++F++ FPL + +G ++ + L E F + N Sbjct: 194 MVALLLTSVVLGIMARAFPQMNVFMVSFPLNIGLGFMVLGMTLLLFFHVLELSFGNLANQ 253 Query: 251 LADIISEL 258 +A I L Sbjct: 254 VAMIFRLL 261 >UniRef50_B8GQZ8 Flagellar biosynthetic protein fliR n=2 Tax=Thioalkalivibrio RepID=B8GQZ8_THISH Length = 257 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 95/257 (36%), Positives = 153/257 (59%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-A 60 + T+ + +W+ WP LR+ A++ AP+ +V RV+L +A ++ +AP +P Sbjct: 1 MNFTTAEITAWIGSLLWPFLRISAMLLAAPLYGAGTVTVRVRLAIAFILALVVAPLIPLP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L ++VQQILIG+ +GF +Q FAA+ AGE I L MGL FA+ VDP S + Sbjct: 61 PAVEPLSLAGLVVSVQQILIGLTIGFVLQMVFAALTQAGEAIALSMGLGFASMVDPQSGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PV++ +++ LLFL NGH+ LI L + +F LP+G E + AL GS +F Sbjct: 121 QVPVVSSYFVIMSTLLFLALNGHVALIELTLLSFQALPVGVEGVTREGLWALVSWGSTMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L L++ALP + +L +NL++G++ R APQL+IF +GFP+ + +G L+ P++ P Sbjct: 181 LYALLVALPAVASMLLVNLSMGVITRAAPQLNIFAVGFPMMIMLGFILLLLTTPVLLPKF 240 Query: 241 EHLFSEIFNLLADIISE 257 L + F+L+ + + Sbjct: 241 TELLASGFDLMGILTRQ 257 >UniRef50_Q7NUT8 Type III secretion system EscT protein n=5 Tax=Proteobacteria RepID=Q7NUT8_CHRVO Length = 257 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 111/253 (43%), Gaps = 3/253 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVPV-F 66 W WL + +LR L + P+ S ++ ++ L +MI + P P +P Sbjct: 4 WTQWLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPVYPQWQLPAAG 63 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 ++ + LA +I IG+ +GF F + AG +I G S A+ ++P + Sbjct: 64 AWGYVLLAAGEICIGLMIGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPLLGQQSSLFG 123 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL-NSNAFLALTKAGSLIFLNGLM 185 + + +LFL G L+ + ++ TLP G + A + L++ L Sbjct: 124 LLFTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYELCLR 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 ++P I ++L +++ALGL+NR A QL++F + P+ + ++ + + Sbjct: 184 FSMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLMLIVSLSFAFNGLLDYSA 243 Query: 246 EIFNLLADIISEL 258 L ++ +L Sbjct: 244 HFTKLTDALLEQL 256 >UniRef50_Q3V7F9 Flagellar biosynthetic protein fliR n=5 Tax=Legionella RepID=Q3V7F9_LEGPA Length = 256 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + + + ++ + WP++R+ L+ T P+LS +P R+K+ ++ +P N Sbjct: 1 MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN 60 Query: 62 D-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 F+ L VQ++L+G+ +GF +Q F G+II +Q GL FA VDP S+ Sbjct: 61 LSFENFNGLYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++P+++++ M+ L+FL NGHL ++ L+++F +PIG L+ + + +F Sbjct: 121 SVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIVWSTIMFSGWMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 +++++P I LL ++L+ G++ R+APQL++F +GFP+TL +G ++ +P + Sbjct: 181 KEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM 240 Query: 241 EHLFSEIFNLLADIIS 256 + I+ Sbjct: 241 VESIKHGIQFITGILR 256 >UniRef50_B8CKZ1 Flagellar biosynthetic protein fliR n=22 Tax=Gammaproteobacteria RepID=B8CKZ1_SHEPW Length = 266 Score = 144 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 145/257 (56%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + + + + Y WPL R+ ++ + + P RV+L L++ +T A+ P LP Sbjct: 1 MNILLDTIMGGIAGYMWPLTRISSMFMVMAVFGANTTPSRVRLLLSLTVTAAVVPVLPPM 60 Query: 62 D-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + +FS A+++ QQI+IG+++GF+ G+IIG+Q L FA+ +DP S Sbjct: 61 PDIELFSLSAVFVTFQQIIIGVSMGFSTLLLMQTFVLTGQIIGMQTSLGFASMIDPGSGQ 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 PV+A +L ++FL +GHL LI ++V +F ++P+ E L+ ++ T+ +F Sbjct: 121 QTPVVANFFLLLTTMIFLAVDGHLILIKMVVASFDSIPVSMEGLSLASYRMFTEFVGYMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L ++L I LLT+NL+ G++ R +PQL+IF IGFP+T+ G+ ++ + I Sbjct: 181 GAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVSGLFILWLTLTPIMAHF 240 Query: 241 EHLFSEIFNLLADIISE 257 + ++ E+ LL +++ Sbjct: 241 DEVWREVQILLCNVLEL 257 >UniRef50_B6AMB3 Flagellar biosynthetic protein fliR n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMB3_9BACT Length = 262 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 1/250 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF- 68 L LY W L RV L+ + P+LS ++VP R+K +A+ + F I P + N P F Sbjct: 8 TDTLLLYVWVLARVSGLVVSMPVLSGKAVPVRIKALIAVALAFLIEPVVLGNVSPPRLFS 67 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L V + +G+ALGF+ FAAV AGE+ G+Q+G ++P +P+L Sbjct: 68 AWLGSLVTEFFVGVALGFSSYLVFAAVSFAGELAGVQVGFGLVDVINPLGLAEVPLLGTF 127 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + +A L+FL H LI L ++ +P G + + + + G+ LA Sbjct: 128 QNSVAFLVFLASGTHEALIWALGRSYAVVPPGEGRFRTIFYEGYLGVFAHFMVLGITLAA 187 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P + + LNLA+G L+RM PQ+++ +GFP+ + G+ L+ +P + E F + Sbjct: 188 PFLVGGIVLNLAMGFLSRMMPQMNLISVGFPVLVLGGLGLLILSLPFLGSVLEDSFFRMD 247 Query: 249 NLLADIISEL 258 L I+ + Sbjct: 248 ETLGGILRLV 257 >UniRef50_C1DAZ1 Flagellar biosynthetic protein fliR n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DAZ1_LARHH Length = 264 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 93/256 (36%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +T + L+ Y WPL RV+ + P+ ++VP+RVK+ LA+ +T + P LP Sbjct: 1 MLALTDAEIRLLLSTYLWPLFRVMGFLLADPLFGTKAVPRRVKVVLAIALTLLLVPLLPP 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 VPV S +++ VQQ+LIG+A+GF M+ AV AG +IG+QMGL FA DP Sbjct: 61 MPAVPVVSGEGVFIIVQQLLIGVAMGFAMRLVITAVELAGAMIGMQMGLGFAMQFDPMMG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P L+R++ + L+ L+FNGHL ++ + ++F PI +PL + + G + Sbjct: 121 AQVPSLSRLLTLSTYLVLLSFNGHLIMLGTVAESFTLFPISLDPLPAAGLQLVAAWGGKM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L L+LP++ LL NLA+G++ R APQ +IF GFPLTL +G ++ +P + Sbjct: 181 LALALWLSLPVVVALLITNLAIGVMTRAAPQFNIFSFGFPLTLLIGFVVLYYALPFMGQA 240 Query: 240 CEHLFSEIFNLLADII 255 + L+ + F L+ + Sbjct: 241 LQQLYLQGFELMRQTL 256 >UniRef50_Q3J976 Flagellar biosynthetic protein fliR n=3 Tax=Gammaproteobacteria RepID=Q3J976_NITOC Length = 236 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 128/230 (55%) Query: 28 STAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFT 87 P+ + VP R++L LA+ +T IAP +PA V S L +QQ LIG A+ Sbjct: 1 MAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGGLLVMQQFLIGFAMALV 60 Query: 88 MQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLI 147 +Q F A G+I+ QMGL FA+ +DP + + + +++++ +L L+FL NGHL +I Sbjct: 61 LQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVFLGLNGHLVVI 120 Query: 148 SLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRM 207 +L ++F+ LP+G E + F L AGS + +++ALP I L +NL G+++R Sbjct: 121 QVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIALPAIGALSLVNLTFGVMSRA 180 Query: 208 APQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISE 257 APQL+ F IGFPLTL +G ++ +P +L L+ + E Sbjct: 181 APQLNPFSIGFPLTLILGFWVLLFTLPNAPSHLVNLTDTALTLIRAWLEE 230 >UniRef50_C8WBS9 Flagellar biosynthetic protein fliR n=3 Tax=Zymomonas mobilis RepID=C8WBS9_ZYMMN Length = 265 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 141/256 (55%), Gaps = 2/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITF--AIAPSL 58 M+ + ++L ++ LLR A AP+L + P V++ LA+ + + L Sbjct: 1 MIPAHLAEIENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMHAHL 60 Query: 59 PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 D + SF L+L V +I+ GIA+GF +Q +AA E+IG MGL FA+ +DP + Sbjct: 61 ILPDSGLVSFTGLFLVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVN 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 N VL +I +L FL +GHL LI ++V+++ T+P+GG LN+ FL LT+ Sbjct: 121 GSNSNVLTQIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQ 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F G+++ALP+ ++ + + +G L+R AP L++F +G P+ L +GI L+A +P I+ Sbjct: 181 LFSIGMLIALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISE 240 Query: 239 FCEHLFSEIFNLLADI 254 ++ + Sbjct: 241 GVIDAIRSGLDVADKL 256 >UniRef50_A4SI10 Flagellar biosynthetic protein fliR n=4 Tax=Gammaproteobacteria RepID=A4SI10_AERS4 Length = 260 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 2/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 +L +++ +WL ++WP +R+ P+ + +P +V+L A +I+ IAP L Sbjct: 4 LLSLSAADLTAWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLFAFIISLLIAPMLKE 63 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V FS AL L V+Q+L G+ G +Q F + AG+I+ +QMGL+ A DP++ Sbjct: 64 MPVVDPFSTGALVLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGLAMAVMNDPSNG 123 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + P+++++M + LLFL NGHL + +LV + + P G + + Sbjct: 124 DSAPIVSQLMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSSLDLLD-MKGVIGLFGWC 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 L+L LP + +L +NL G++NR AP L+IF +GFP+TL +G+ MA + + Sbjct: 183 IGAALILTLPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPAR 242 Query: 240 CEHLFSEIFNLLADI 254 L + + L + Sbjct: 243 YLDLVTHVLEQLRAL 257 >UniRef50_B9KJE3 Flagellar biosynthetic protein fliR n=4 Tax=Rhodobacter sphaeroides RepID=B9KJE3_RHOSK Length = 269 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 1/243 (0%) Query: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-SFFALWLAV 75 F LR+ A + +P R VP V++ +++T + + S A+ L + Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTLPVLGRVELPPPEALASLAAIPLMM 82 Query: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 Q+I +G++ G + F+A AG+ I GL FA +DP++ PV+A+I + Sbjct: 83 QEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLALTT 142 Query: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLL 195 +FL +GHL + +L+ ++ +LP G A AG +FL GL + +P++ L+ Sbjct: 143 VFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVVAALI 202 Query: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADII 255 +N+ +G++ R APQL++F GFP+T++ + L+ P L E LA ++ Sbjct: 203 LINVTIGIVTRSAPQLNVFSFGFPVTMSATLILLFLTAPGTMGAFSGLVEESLTALAGLL 262 Query: 256 SEL 258 + Sbjct: 263 GVV 265 >UniRef50_A4J751 Flagellar biosynthetic protein fliR n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J751_DESRM Length = 255 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 129/238 (54%), Gaps = 2/238 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV--PVFS 67 L ++ +F +R+L+ I + P+ + +P VK GL++++ AP + P Sbjct: 4 LVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGL 63 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + ++ +G+A+G F F A+R AG+++ Q+G + A +DP +++R Sbjct: 64 WGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSR 123 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + + L+L++ +GH LI LV ++ +P+ +N L + + + F + + Sbjct: 124 FLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAVQIC 183 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 P++ +L+ +LA+GL+ + APQL+IF +GFPL + VG+S +A L+P + ++LF Sbjct: 184 APVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLFD 241 >UniRef50_B0MPC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPC9_9FIRM Length = 262 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 1/253 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPV 65 + L+ + + RV + S PI S + P R++ G + + A S+ P Sbjct: 8 DMILNNFLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGNIKYEPT 67 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 F L+ ++++ +G+ LGF + A +AGE+I Q GLS A +DPA+ ++MP+ Sbjct: 68 GIFMMLFDMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLF 127 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 A + + +L F NGHL I L ++ TLPIG ++ AL S + + Sbjct: 128 ANVYYYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVK 187 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA P+I + + LG+L + P + IF + L + +G++ + + ++ F E L Sbjct: 188 LAAPIIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIEKLMG 247 Query: 246 EIFNLLADIISEL 258 ++ L ++ + Sbjct: 248 IMWQNLYGLLGMM 260 >UniRef50_Q5DY35 Flagellar biosynthetic protein fliR n=37 Tax=Enterobacteriaceae RepID=Q5DY35_ECOLX Length = 260 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 135/255 (52%), Gaps = 2/255 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q + ++P +R++A + P+L ++ RV++ L++ + I P +P Sbjct: 1 MRTSDVTQLMDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPH 60 Query: 61 N-DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S +L L V+QIL G+ G QF F A++ AG+I+ MG+S A DP+S Sbjct: 61 PIPHDLLSLNSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + VLA ++++ A+LLF +GHL L+S+L F PIG L+ + A S + Sbjct: 121 ASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNA-LHPQTLRTIALAFSWV 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 + +LALP ++L + GLLNR+AP L++F +GFP+ + VG+ A L+ + Sbjct: 180 LASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDH 239 Query: 240 CEHLFSEIFNLLADI 254 HL + + L + Sbjct: 240 YLHLANFVLQQLDAL 254 >UniRef50_A4Y0Q5 Flagellar biosynthetic protein fliR n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q5_PSEMY Length = 264 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 143/256 (55%), Gaps = 3/256 (1%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-ND 62 + + Q+L+ L Y+WP R+LAL+S AP+ + ++V RV++ LA+ +T A+ +LP Sbjct: 6 LHASQYLTSLQAYWWPFCRILALLSMAPLFNHKAVSVRVRILLALALTVALGAALPDMPP 65 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH-LN 121 + S L A++QI G+ LG T+Q F GE++ QMG+S A + DP + + Sbjct: 66 IDPLSLQGLMTALEQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSS 125 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++ ++ +L +LLF +GHL +S+L +F P+G A + +A + + Sbjct: 126 SSIVYQLYFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSGLHYLGA-QSFVQAFAWVLA 184 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 +++ LP++ L + GLLNR++P +++F +GFP+++ +G+ + +P + Sbjct: 185 AAVLVTLPIVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDSYL 244 Query: 242 HLFSEIFNLLADIISE 257 HL E+ N + I+ E Sbjct: 245 HLTRELLNGIGVILHE 260 >UniRef50_Q31HN5 Flagellar biosynthetic protein fliR n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HN5_THICR Length = 247 Score = 142 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 97/243 (39%), Positives = 148/243 (60%), Gaps = 1/243 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSFFAL 71 + LYFWP +R+ ++ PILS VP V+L LA+ ITFA+APSL V F++ + Sbjct: 1 MGLYFWPFIRISGMLLMVPILSGSYVPMNVRLLLAVFITFAVAPSLALPPPVDPFTWHGI 60 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L VQQ+ IG+A+G F A AG + + MGL+ A+ VDPA+ +N P++ R + Sbjct: 61 LLIVQQLGIGVAIGLIFALIFQAFVIAGHLASMSMGLAMASMVDPATGVNTPIIGRYFTI 120 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 +A LLFL NGH+ + ++ +F TLPIG ++ + GS +F +G+ +ALPL+ Sbjct: 121 IATLLFLLMNGHVLVFKAVLQSFETLPIGLHFFTQDSLKLIYGFGSQMFESGVTIALPLV 180 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 T LL +N+A G++ R AP L+IF +GFP+TL VG+ ++ + PL+ P + L LL Sbjct: 181 TALLLVNIAFGVVARAAPALNIFAVGFPVTLLVGLIMLVFITPLLYPNLQILMKATVELL 240 Query: 252 ADI 254 A + Sbjct: 241 AQL 243 >UniRef50_A3V236 Flagellar biosynthetic protein fliR n=3 Tax=Rhodobacterales RepID=A3V236_9RHOB Length = 275 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 1/252 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + + ++ ++F LR+ A +AP ++P +V++ +++ I F + D Sbjct: 20 QSLIDFMLVFFLHTLRLSAFFLSAPFFGAAAIPVQVRVIVSVAIAFGFYGLIDVPDPQNL 79 Query: 67 SF-FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 F + +A+ +++IG++LG AF+AV GE I GL FA +DP S PV+ Sbjct: 80 PFLSMIEVALIEVVIGLSLGLAFTIAFSAVALTGEKIAASAGLGFAAQMDPNSGGQTPVI 139 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 ++ +++ A+ FL+ +GHL +I L+ ++ LP+G S A +F Sbjct: 140 SQFLNLFAIAAFLSLDGHLHMIGLIRMSYEVLPLGQPFKFSAFITGGLAAAGHMFTIASQ 199 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L LP++++LL N+ +G++ R APQL++F GFPLT+ + A + Sbjct: 200 LMLPVVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYVSTAPFASGIAEMIE 259 Query: 246 EIFNLLADIISE 257 I + D I E Sbjct: 260 FILEFIEDTIGE 271 >UniRef50_C6HWM1 Flagellar biosynthesis protein FliR n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWM1_9BACT Length = 269 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 115/246 (46%), Gaps = 2/246 (0%) Query: 15 LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF--FALW 72 L+ L R ++ P + R+VP +VK +A+ ++ + P + + L+ Sbjct: 18 LFVLILARTSGVLIAMPAFNSRAVPTKVKALVAVALSALLFPVVGGRVNFHETGYDALLF 77 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + + ++G+++GF FAAV AG++ G+Q G ++P +P+L + Sbjct: 78 SILTEFVVGVSMGFAAYLVFAAVALAGQLAGVQAGFGIVDVINPLGVAEVPLLGNFQTQI 137 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A L+FL N ++ L ++ + +GG + + F + + GL+LA P I Sbjct: 138 AFLIFLATNAQYAMLWALARSYDVVGVGGASFSGSYFAGIAHLFGRMMSLGLVLASPFIV 197 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 + LNL LG L++M PQ+++ +G P+ + G+ L +P + I L Sbjct: 198 GGVILNLVLGFLSKMMPQMNLISLGLPVMVLGGLVLTILGLPFLGTVLGEAMGRISPTLD 257 Query: 253 DIISEL 258 D++ + Sbjct: 258 DLLRVM 263 >UniRef50_C6NWP1 Flagellar biosynthetic protein fliR n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NWP1_9GAMM Length = 262 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 101/257 (39%), Positives = 162/257 (63%), Gaps = 2/257 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +TS Q W+ +FWP +R+LAL+STAP+ S +VP +V++GLA +I+ AIAP+LP Sbjct: 1 MISLTSGQLEHWIGAFFWPFVRILALLSTAPVFSASAVPIQVRVGLAAIISVAIAPALPT 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S L L V+QI+IG ALGF + F+AV+ AG +I LQMGL F++F DP + Sbjct: 61 LPAVHFLSGAGLVLLVEQIVIGTALGFAVTLIFSAVQFAGSVISLQMGLGFSSFFDPTTG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSL 178 + +P L+ +++ LL F+ NG L ++ +L+ +F LP+ +++ A+ L AG+ Sbjct: 121 VQVPTLSNFLNLAVLLFFMALNGQLLVLVVLMRSFTVLPVDPNLVVHATAWHVLAAAGAA 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F G+ +A P++ L +N+ALG+L+++APQL++FV+GFPL + VG+ + L P + Sbjct: 181 VFSLGMAIAAPVLGALFLVNIALGVLSKLAPQLNLFVVGFPLLIGVGLIGLYLLAPALEL 240 Query: 239 FCEHLFSEIFNLLADII 255 L NL + Sbjct: 241 VVRQLLDLALNLSGRFM 257 >UniRef50_UPI0001C312BD flagellar biosynthetic protein FliR n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312BD Length = 266 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 129/255 (50%), Gaps = 1/255 (0%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS-LPAN 61 Q+ + + + +F L RV L AP+ + R VP R + +A+ + P + Sbjct: 10 QLLAALGVRNVVGFFLVLARVSPLFLVAPMFNSRQVPARARTIVALAFALGLYPLAVAGQ 69 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 +P +F + L V+++L+G+A + FAAV AG ++ +G +F +DP + Sbjct: 70 TLPTEAFAIVGLIVKEMLVGLAFALCVSVMFAAVDAAGTLLDFMVGFAFGGSLDPITGNQ 129 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 VLAR+ ++A+ +F+ NG WLI + TF +P+ P ++ + + IF Sbjct: 130 SAVLARVYSLVAVAIFIAINGDAWLIQGMSRTFDIVPLSASPDFASISQGVVAVFTTIFA 189 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + L +A P++ + ++A GL++R+ PQ+++F +GFP+ + VG+ ++AA +P + + Sbjct: 190 SALAVAAPVLIACVLTDVAFGLVSRVVPQMNVFAVGFPVKVIVGLVVVAASLPFVGGWIS 249 Query: 242 HLFSEIFNLLADIIS 256 + Sbjct: 250 DQLQLSVGEALQTLR 264 >UniRef50_Q3A5E4 Flagellar biosynthetic protein fliR n=3 Tax=Deltaproteobacteria RepID=Q3A5E4_PELCD Length = 258 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67 ++ + + RV +L S PI P R+++ L++ I + P LP P+ Sbjct: 8 IASIQGFLVCAARVTSLFSALPIFGSAQTPVRIRIALSVTIALVVYPLLPELLPATPLTP 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L Q+ ++G+ +GF + F AV G IIG QMG + A DP S + ++++ Sbjct: 68 IGLGILIAQETMVGLMIGFIARLVFIAVEFGGSIIGYQMGFAAANVFDPQSQHQVSLISQ 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 ++ A+LLFL F+ H + L+ D++ LP G L A L L++ +F + + Sbjct: 128 FQNVFAILLFLAFDVHHLFLRLIADSYRLLPAGDAKLGGEAVLFLSRLTGEMFTLAVKFS 187 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ +LL L LG+++RM QL+ F++ FP+ + V + M L+A + F + Sbjct: 188 APVLIVLLLSGLVLGIMSRMFQQLNAFMLSFPINIGVSFLSIGLTMQLLAVMLQREFGAL 247 Query: 248 FNLLADIISEL 258 ++ L Sbjct: 248 QQRFYALLDLL 258 >UniRef50_Q3V824 Flagellar biosynthetic protein fliR n=4 Tax=Bacillaceae RepID=Q3V824_BACSK Length = 260 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 125/255 (49%), Gaps = 4/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 ++WL+ + +RV + P+ + R+VP +KLGL+ + +A SL ++ Sbjct: 2 DEWLTLYPAFLLIFIRVSSFFVVLPLFNHRTVPAPLKLGLSAFLAATLAVSLDVPEL-AL 60 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 L LA+++ IGIA G AV+ AG +I +G A VDP + P+ Sbjct: 61 DLPFLLLALKEFAIGIAAGLMASMILYAVQVAGGVIDFHLGFMLANVVDPQTGAQSPLTG 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN---SNAFLALTKAGSLIFLNG 183 + + A+L L +GH L+ ++ ++ +P+ L + +T+ ++F Sbjct: 121 SYLYLFAMLYLLIIDGHHLLLDGVIYSYQFVPLDQLVLPFGSGHVMEHVTQVMVMLFAMA 180 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + +A+P+ L +++ALG+++R PQ+++FV+G P+ + G + A + + L Sbjct: 181 VSMAMPVAGALFLVDVALGIISRTVPQMNVFVVGIPIKMLAGFIVFAIYIGVFFMSVNVL 240 Query: 244 FSEIFNLLADIISEL 258 F E+ + ++ L Sbjct: 241 FEELLLAMRRLLEGL 255 >UniRef50_A5V2S0 Flagellar biosynthetic protein fliR n=3 Tax=Sphingomonadaceae RepID=A5V2S0_SPHWW Length = 260 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 2/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 M+ + L L+ ++R A AP+ VP +++ +A+ I + P Sbjct: 1 MIPQGLAGIETQLWLWMIAMIRPGAAFIAAPVFGAPQVPMQLRAVVALAIGIPALANTPF 60 Query: 60 -ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + + L +IL G+ALGF +Q F+A AGE+IG MGL FA +DPA+ Sbjct: 61 VMPVGGIVTIEGFLLVAGEILAGLALGFAVQIGFSAALVAGEVIGNAMGLGFAGMMDPAT 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 P +++ + +LA LFL GHL L +++V+++ LP G L + + L G Sbjct: 121 GSPSPAVSQYLSLLATFLFLATGGHLQLAAIIVESYRALPPGEAWLGARSIQGLALFGGD 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 +F GL +ALP+ L+ + L + +L R APQ++IF +G P TL G+ L+A P++A Sbjct: 181 LFAAGLAIALPVGFALILVQLVMAMLARSAPQMNIFSVGLPATLMAGLVLLAIAAPVMAD 240 Query: 239 FCEHLFSEIFNLLADI 254 + Sbjct: 241 GITAAIQRGLAEARLL 256 >UniRef50_Q52497 HrpC protein n=5 Tax=Ralstonia solanacearum RepID=Q52497_RALSO Length = 282 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 3/224 (1%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV-QQIL 79 +R++ L S P +++ + + G+ + +A P + S L++ ++I Sbjct: 30 VRIMTLFSILPATNDQMLTGIARNGVVYALAILVAAGQPVGLAALLSAGQLFMLTCKEIF 89 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G LGF F TAG +I G + +P + + L + L Sbjct: 90 LGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLGVTLLYA 149 Query: 140 FNGHLWLISLLVDTFHTLPIGGEPLNSNAF--LALTKAGSLIFLNGLMLALPLITLLLTL 197 G L+L+ ++ ++F P+G + NA L + IF + LA P++ +L + Sbjct: 150 AGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTMLLI 209 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + +G + R A +L +G P+ V + ++ AL+ ++ + Sbjct: 210 DAGIGFVARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVK 253 >UniRef50_C4V4A3 Flagellar biosynthetic protein fliR n=3 Tax=Selenomonas RepID=C4V4A3_9FIRM Length = 260 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 136/255 (53%), Gaps = 3/255 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA---NDV 63 E + ++ L+R + +P ++P ++G A+ +T + P + V Sbjct: 5 ELLQGHIAVFLLMLVRTSGIFLISPFFGSMNIPIFFRVGTALSMTVVLFPVVDGLGTPYV 64 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P AV ++ IG +GF +FAA+ AG+++ +Q+G + VDP S +P Sbjct: 65 PENLIMFALTAVGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIP 124 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++ + LA ++ L NGH +++ LV++F +PI G N + L + IFL G Sbjct: 125 LIGSFLYNLAAIILLATNGHHMILAALVESFRAVPIAGMEGNVSLALLIANFTGTIFLTG 184 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + +A+P+ +L N+ LG+L+R PQ++IFV+G PL L +GI++++ ++P F + L Sbjct: 185 MKIAMPITFAILLTNVGLGILSRTMPQMNIFVVGIPLQLMIGITVLSMIIPFYVLFLDVL 244 Query: 244 FSEIFNLLADIISEL 258 F+E++ ++ I L Sbjct: 245 FNEMYGNISLAIRAL 259 >UniRef50_Q3JKQ7 SctT n=58 Tax=Proteobacteria RepID=Q3JKQ7_BURP1 Length = 531 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 104/246 (42%), Gaps = 2/246 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 LQ ++++ ++ L R+L L++ P ++ + ++ G A + +A A Sbjct: 209 LQHLGDEFIRFIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQAL 268 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + F + V++ +IG+ LG F A G + G + +P+S Sbjct: 269 IPQLHGAFLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQ 328 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGSLIF 180 ++A + L + F G +L+ L ++F P+G P+ + +A + Sbjct: 329 TSLMATLFGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDML 388 Query: 181 LNGL-MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +N + +A P++ +LL ++L L + R A +L + + PL + + ++A L Sbjct: 389 MNMIARIATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSE 448 Query: 240 CEHLFS 245 S Sbjct: 449 MRGQIS 454 >UniRef50_C7R0I3 Flagellar biosynthetic protein fliR n=2 Tax=Micrococcineae RepID=C7R0I3_JONDD Length = 253 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 123/252 (48%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 T + + +R +A AP S RS P VK+ LA+ + A+AP++ Sbjct: 2 TLTLSAATIETVMLVSVRFIAFFVIAPPFSARSFPATVKMMLALGMALAVAPTITPAVPA 61 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + Q++IG +LGF + FAAV +AG +I + G + A DP + +N Sbjct: 62 QNFGTYMLALGLQVVIGASLGFIVYLVFAAVESAGGMIDMTGGFAMAQGFDPLNQVNGAQ 121 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + R+ M AL L NGH ++ + +F P+ G ++ + +FL + Sbjct: 122 MYRLFQMTALALLFASNGHHLIVGGFIRSFEFAPLAGGINMDRMGQSVATGLTDLFLAAI 181 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 +A PLI +L+ ++ +GLL+R+AP L++FV+ FPL + + I+L++ + E L Sbjct: 182 QIAGPLIVVLVLADVGMGLLSRVAPALNVFVLSFPLKIFLTITLVSVVYLTFPRIIEALT 241 Query: 245 SEIFNLLADIIS 256 + L ++I Sbjct: 242 NTSIERLWEVIR 253 >UniRef50_A4XIZ3 Flagellar biosynthetic protein fliR n=2 Tax=Clostridia RepID=A4XIZ3_CALS8 Length = 260 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 128/257 (49%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ +L+ ++F L R+ + +PI R++P K+GLA ++ + Sbjct: 1 MEGIFGYFLNGSYIFFLVLARMSGIFIASPIFGRRNIPAYFKIGLAFFLSIIVVLLYHFE 60 Query: 62 -DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 VP +++ ++ ++GI +GF F+ + AG+II +G A +DP S + Sbjct: 61 YTVPQNLLEFIFVVTKEFIVGIIIGFISYMIFSTILLAGQIIDNAIGFGIANVIDPMSEI 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +P+L + + L++F + H LI +V ++ +P+G + +F Sbjct: 121 QVPLLGNFLYLYMLVIFFATDAHHTLIRAVVYSYKVVPLGYSNILPKLSQKFITFFIELF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G+ ++LP++ +L +++ LG+L+R PQ+++F++G P+ + +G ++ ++P++ Sbjct: 181 VIGIEISLPILMSMLIVDIILGILSRAVPQMNVFMVGIPIKIAIGFVVLVIVLPIMNKMI 240 Query: 241 EHLFSEIFNLLADIISE 257 L ++ D + Sbjct: 241 FVLLDKLSYYTFDALRG 257 >UniRef50_B8FK33 Flagellar biosynthetic protein fliR n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK33_DESAA Length = 260 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 123/248 (49%), Gaps = 2/248 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFS 67 ++ + ++ L+RV ++ P+ +P VK GL++++T + P + N P Sbjct: 8 MNEMAVFALILIRVSVILFMFPVFGSNLIPLPVKAGLSLLLTLYLTPIVQVNPQSFPDTV 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + ++G+ L + F FAAV+ G+++G QMG + A DP S M +L+ Sbjct: 68 LEGGVMILCEAVMGLTLSLIVSFFFAAVQVGGQLVGYQMGFAIANVFDPVSGGQMSILSN 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + L+LF+ NGH I + +F +P+G + ++ K + +F L +A Sbjct: 128 FAFWVTLVLFIVLNGHHIFIRAVAHSFEIVPVGHLYAGRSIMPSMIKLSTDMFTLSLQIA 187 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P I LL +N A G++ ++ PQ++I ++ FP+ + +G+ + LI + E Sbjct: 188 GPAIVALLLVNAAFGIVAKVVPQINILIVAFPINVGMGLFFFGVSLQLILASMKAHLDEW 247 Query: 248 FNLLADII 255 +L I+ Sbjct: 248 ERVLHSIM 255 >UniRef50_Q1YV75 Flagellar biosynthetic protein fliR n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV75_9GAMM Length = 256 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 140/255 (54%), Gaps = 1/255 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + + + WP++RV A + +P S R+V RV++ LA ++T I P + Sbjct: 1 MDILVAEVVQRFYTLLWPMIRVSAFLLASPFFSLRAVNVRVRVLLAALLTLMIYPLVDWP 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + +S L QILIG +G +Q A++ G+ + MGL A +DP N Sbjct: 61 IIDPYSAAGLREIFNQILIGTVMGMLLQIVNASLVIGGQAVSSAMGLGMANMIDPNMG-N 119 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +PV+++ + + L+F+ GH+ +ISL++++F TLP+G L + S+IFL Sbjct: 120 VPVISQFFIICSTLIFMGIGGHVLVISLILESFKTLPVGQMLAPDMLMAVLLQWSSMIFL 179 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 GL+LALP++ LL +N+ +G++ R AP L+IF +GFP + VG+ L+A M I + Sbjct: 180 GGLLLALPIMVSLLFVNIGVGVITRAAPALNIFAVGFPAMIMVGMVLLATSMTSIGYRIQ 239 Query: 242 HLFSEIFNLLADIIS 256 L+ E FN++ + Sbjct: 240 WLWRESFNVVGQALG 254 >UniRef50_A6W8L5 Flagellar biosynthetic protein fliR n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L5_KINRD Length = 274 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 113/239 (47%) Query: 21 LRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILI 80 +R A + AP + ++V +VK L++ + A+A L + V + VQQ ++ Sbjct: 20 VRSAAFLMLAPPFANKAVNGQVKALLSVGLGLAVAERLRDSVPAVEPGALITAVVQQAVV 79 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G +G + FAAV+ AG+++ L G A+ DP V ++ + L + Sbjct: 80 GAVMGAFVALVFAAVQAAGDMLDLFGGFQMASAYDPLMQSQTAVFGKLYTWTSTALLVVS 139 Query: 141 NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLA 200 GHL ++ + ++ LP+ T+ + + ++ + +A PLI +L ++ Sbjct: 140 GGHLLILQGFLRSYDVLPLDAGLDTGTVARVFTEGVAQLVISAVQIAAPLIAVLFLTDIG 199 Query: 201 LGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELP 259 LGLL+R+AP L++F + FP+ + + ++L ++ + + + +++ P Sbjct: 200 LGLLSRVAPALNVFAMSFPVKILITLTLAGFAFSMLPGVVDDMAGTARETVVRLVTPGP 258 >UniRef50_C1A548 Flagellar biosynthetic protein FliR n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A548_GEMAT Length = 295 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 109/244 (44%) Query: 14 NLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL 73 LR+ L+ AP S +SVP +++ + ++ + P+ A Sbjct: 19 TALVLTALRIGGLLLIAPAWSAKSVPMKLRTAMLVLFAVLLLPTALATTDRATLAITPAT 78 Query: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 + + IG A GF A AGE++ +GLS A DP ++ + M ++A Sbjct: 79 FLAETAIGFAFGFAAALVIAGAEFAGELMTTTIGLSGAAIFDPVNNTQGAIFGSFMQLMA 138 Query: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 L L L GH+ +I + +F LP+G FLALTKAG IF GL A P+I Sbjct: 139 LTLLLITGGHIVMIEAIAKSFSVLPLGAPIDMQAGFLALTKAGGTIFATGLQFAAPVIAA 198 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 +L N+AL +L R APQL I + FPL + +G+ A + LI + + Sbjct: 199 ILVTNIALAILGRAAPQLQIMSLAFPLQIGIGLLTFAGSVGLIVHALGEWTTPYGKTIDA 258 Query: 254 IISE 257 + Sbjct: 259 FVRG 262 >UniRef50_Q17YT4 Flagellar biosynthetic protein fliR n=18 Tax=Helicobacteraceae RepID=Q17YT4_HELAH Length = 255 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 119/255 (46%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML E + +F LRV ++S P VP V+ L++ ++ P+L Sbjct: 1 MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ + + ++ +G+ +Q FA++ A + I MGL+ A+ DP S Sbjct: 61 SNATYTPESFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++ + + +LA+L+ L + H +I + + +P+G + KA S +F Sbjct: 121 QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G +A P++ L+L ++ G++ + PQ ++ IGFP+ + +G + ++ I Sbjct: 181 IIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF 240 Query: 241 EHLFSEIFNLLADII 255 + S F+ ++ I Sbjct: 241 KDEISLAFSTISKIF 255 >UniRef50_A8F4V7 Flagellar biosynthetic protein fliR n=1 Tax=Thermotoga lettingae TMO RepID=A8F4V7_THELT Length = 258 Score = 139 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 126/252 (50%), Gaps = 2/252 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPV 65 E + + + R + + AP ++ VP +VK+ L + +++ + PS+ + Sbjct: 5 EFVETKFLAWVLVVTRNAGMFTIAPFFADWFVPLQVKVLLVVFLSWTVLPSINEVIPLHT 64 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + + +IG+ +GF A+ AGE+ G QMG + ++ DP +P+ Sbjct: 65 PVAQIVLSMLSNYVIGLTIGFLALLPVIALSIAGEVFGTQMGFALSSVFDPQR-EEVPIH 123 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 ++ + L +F+ GHL + +VD+ +++P+ ++ N LT+ S +F + Sbjct: 124 GELLYVFGLYIFVALKGHLLIYQAVVDSLNSIPVSKTLIDFNFVSVLTEKISEMFSIAMK 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 + +P+I + +++LG+++R+ PQ+++F++G PL + VG LM ++P+ A + + Sbjct: 184 IGMPMIGFMFVTSISLGIISRLVPQMNVFMVGMPLKILVGFILMVGMIPVWADVFSQIAA 243 Query: 246 EIFNLLADIISE 257 N L + Sbjct: 244 RTINFLEFFVRS 255 >UniRef50_Q0AYL9 Flagellar biosynthetic protein fliR n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYL9_SYNWW Length = 253 Score = 139 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 2/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV--PVFSFFA 70 L +F+ L R+ L TAPI S R +P RV+ + +M+ +A +P Sbjct: 5 LESFFFLLARLSGLFITAPIFSSRMMPGRVRALIVIMLAATLAYFVPVEYSRNINTPGLF 64 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + +I IG +GF + A ++ +G+++ + MG S VDP S +P++ Sbjct: 65 IAALAVEIFIGYTIGFVIYAVLATIQLSGQLMDMLMGFSIVNVVDPQSGTQIPLMGNFTQ 124 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 LALL +L +GH +L+ L ++ +P+ L L + G+ IF+ + +A P+ Sbjct: 125 ALALLTYLAIDGHHYLLQALAQSYAIVPVMSAHLPGGFLELLVEVGTYIFVVAVKIAAPM 184 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + +LT ++A+G + R PQ+++F++G PL + +G+ + L+P+ LF+E F Sbjct: 185 LVAILTSDVAMGFIARTVPQMNVFLVGLPLKIFLGLITLLLLLPIYLWVYNVLFAEFFGY 244 Query: 251 LADII 255 L II Sbjct: 245 LDRII 249 >UniRef50_A6U663 Flagellar biosynthetic protein fliR n=7 Tax=Rhizobiales RepID=A6U663_SINMW Length = 250 Score = 139 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF---F 69 + F R+ I P S VP +++L +A+ I+ AI P + + P + Sbjct: 9 VLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYPQVTGKGHD 68 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L+L + +G +G ++ ++ AG + + MG S D L ++ Sbjct: 69 YLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTAENQLTSLI 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 L++ + H + + ++ +PIG + LT + F+ L LA P Sbjct: 129 SFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFMIMLRLASP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L+ L N+A+G++N++APQ+ ++ I P + G+ L+ + + F+ + Sbjct: 189 LVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFADGFAPVMQ 248 >UniRef50_C4G685 Flagellar biosynthetic protein fliR n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G685_ABIDE Length = 260 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 128/259 (49%), Gaps = 1/259 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ + + L + + + RV A + T+P + S+P+++K+ ++ + + +LP Sbjct: 1 MKMQLQFTVENLEYFLFIVTRVSAFVFTSPFFNFGSIPRQLKVAFTLIFSALLYLTLPYT 60 Query: 62 DVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +V ++ + + L G LG+ + G +I +++G + T DP + Sbjct: 61 EVRYPGIIGFTFMVMSEALAGGMLGYFTNIVMTILNFTGRLIDMEIGFAMVTMFDPVFKV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + V + + +LL L N H + ++ VD + +PIG +N+N + F Sbjct: 121 DTSVSGNLYNYFTILLLLIGNFHHYFLAAFVDAYKVIPIGRAMVNANTVNVIADFLGNYF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L + L LP+ +L +N LG++ ++APQ+++FV+G L L VG+++M + ++ Sbjct: 181 LIAMRLMLPIYATMLLVNAVLGVMAKVAPQMNMFVVGIQLKLLVGLAVMVLMTSMLPGVA 240 Query: 241 EHLFSEIFNLLADIISELP 259 ++L E+ ++ + L Sbjct: 241 DYLTKEMQDVFLKAVEALK 259 >UniRef50_A6TRN9 Flagellar biosynthetic protein fliR n=2 Tax=Alkaliphilus RepID=A6TRN9_ALKMQ Length = 263 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 3/260 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + T Q LS ++++ ++R+ + API S ++P K+ ++ + I P + + Sbjct: 1 MDDTITQILSNIDIFILLIVRISGIFIIAPIFSRNNIPMMSKIIFSVFLALIILPLVTIS 60 Query: 62 DVPVFSFFALWLA--VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + + F + +Q+ +GI +GF F+ AG I+ Q+G DP + Sbjct: 61 EDFAANTFFALMVYAIQEFALGITIGFIGSIYFSTFYLAGMIVDTQIGFGMVNVFDPQMN 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSL 178 +P++ + ++L L+FL NGH LI + D++ LPIG ++ + LT Sbjct: 121 TQLPIMGNVYNLLISLVFLAVNGHHLLIKAMFDSYDVLPIGFQFQVSEALIMHLTIIFME 180 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 IF+ L+ P++ + N+ LG+L R PQ+++F++G PL + VG+ + +P + P Sbjct: 181 IFMMAFKLSAPILATIFLANVLLGILARTMPQMNVFIVGMPLKIIVGLVTIMIALPFLVP 240 Query: 239 FCEHLFSEIFNLLADIISEL 258 F LF ++F + II L Sbjct: 241 FGNALFEKMFTSIDHIIELL 260 >UniRef50_B0RSX9 Flagellar biosynthetic protein fliR n=13 Tax=Xanthomonadaceae RepID=B0RSX9_XANCB Length = 263 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 2/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + ++ + + W +LR AL++ P++ R+VP RV++ L + A+AP LP Sbjct: 7 MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPILPPV 66 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 F+ A+ +++ +G ++GF ++ F A AGE++ GLSFA DP + Sbjct: 67 PEWDGFNATAVLSIARELAVGASMGFMLRLIFEAGALAGELVSQATGLSFAQMSDPLRGV 126 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT-KAGSLI 179 V+A+ + LLF NGHL +I+LLVD++ LPIG ++ AF + + Sbjct: 127 TSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTAVPDAAAFAEVAPTLLLQV 186 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 GL LALP++ +L +NLA G L + AP L+ +G PLT+ +G+ L+++ AP Sbjct: 187 LRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP 246 Query: 240 CEHLFSEIFNLLADIIS 256 + LF F+ + Sbjct: 247 VQRLFDSAFDAARALTG 263 >UniRef50_C9A930 Flagellar biosynthetic protein fliR n=4 Tax=Enterococcus RepID=C9A930_ENTCA Length = 249 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 1/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + R+LA + PI S+++ P K+ + M +T P+ PA + F Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIP-ELSLFMLTV 62 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 ++++L G+A+G+ Q F V AG++I Q+G S A DP + + L Sbjct: 63 FVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTYYWL 122 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 + +F + H LI+ L+ +F +P+G + + K S + + + LA P+I Sbjct: 123 TIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAPMII 182 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 LL ++L LG+++R PQ++I ++ + + + L+P + + + L Sbjct: 183 ALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLSYLGKHLPDTVRYLQ 242 Query: 253 DIISE 257 + I Sbjct: 243 EFIES 247 >UniRef50_UPI00016C0EEE flagellar biosynthesis protein FliR n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EEE Length = 262 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 134/253 (52%), Gaps = 2/253 (0%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67 ++ +++ +R++A++S PI+ E VP V LA+++T + ++P + + Sbjct: 6 DLYAYTDVWLLIFVRIVAVLSLFPIILETKVPATVVAMLAIILTMIVFFTIPQGTISYAN 65 Query: 68 --FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 L ++++L+G+ LGF + F + G++ Q GLS + F DPA +PVL Sbjct: 66 TWLGYSILVIKEMLVGMVLGFGVLIFFQVLNFTGQLWSNQGGLSMSQFYDPALGAQIPVL 125 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 R + + +F+ G+ + IS L+ TF +P+G + N + + + A ++ F G Sbjct: 126 GRFLTLGFSTIFVLSGGYHYFISALIKTFEYIPLGTQFFNPSISITILDAVAIFFELGFK 185 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA P++ +L +++ LG+L R PQ+++FVIG PL L + I L+ ++ I + + Sbjct: 186 LATPILGTILLIDVGLGILARTVPQMNMFVIGLPLKLLILIFLLITIVNYIPEYGNIIID 245 Query: 246 EIFNLLADIISEL 258 + N D++ L Sbjct: 246 NMKNTYFDLLEGL 258 >UniRef50_B1I5J9 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5J9_DESAP Length = 253 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 1/249 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + L + R+ A I+ P+ + R +P VK GLA +++ A+ PS P+ SF Sbjct: 1 MEQLVTFLLVFTRLAAFIAACPVFAMREIPPTVKAGLAFVLSLALLPSAGTAAPPLDSFL 60 Query: 70 AL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 ++ +G+ LG F + AG+ IG Q+G + A + P + +++R+ Sbjct: 61 GFSLALAKEAAVGLGLGIFTSLVFHGLLLAGQYIGFQIGFAIAEMMSPGTEGERAIVSRL 120 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 M + AL+ F++ +GH LI+ L +F +P+G L + KA +F+ L +A Sbjct: 121 MWLFALVFFVSIDGHHLLIAGLAKSFELVPLGAAVAQMKTTLFMAKAYGGLFVIALTIAA 180 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ +LL + LGL+ RM PQ+++F++GFP + G+ + +P+I +F + Sbjct: 181 PVMAVLLVTDAILGLMVRMVPQINVFMLGFPFKVFAGLFALMVTIPVIGWALTRVFGRMT 240 Query: 249 NLLADIISE 257 L ++ Sbjct: 241 EDLLVLMRL 249 >UniRef50_D2S978 Flagellar biosynthetic protein FliR n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S978_9ACTO Length = 254 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + R + AP + RS+P VK LA+ ++ A+ + + F + Sbjct: 10 MAALLLGTARATGFVLLAPPFNSRSIPAPVKGALALALSVALMTRIAPELPDPTTGFLVV 69 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 AV ++ IG ALGF + FAAV+ AG++I L G S DP S + R+ +L Sbjct: 70 GAVTEVAIGAALGFVVHVLFAAVQYAGDLIDLTGGFSLQPAYDPLSMTTSSSVGRLHYLL 129 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A L T GHL ++ ++ LP+GG L A S++FL L +A P++ Sbjct: 130 ATTLLFTSGGHLLVVRGFATSYEGLPVGGSVPTEQLAQVLITALSMMFLAALQIAGPMVA 189 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 +LL ++AL LL+R AP L+IF GFP+ + + ++L+ PL+ P + L + Sbjct: 190 VLLLADVALALLSRAAPALNIFSFGFPVKIMLTMALLGLTFPLLPPALDALLEHAVRAMV 249 Query: 253 DI 254 + Sbjct: 250 SL 251 >UniRef50_C4ZAM9 Flagellar biosynthetic protein fliR n=2 Tax=Clostridiales RepID=C4ZAM9_EUBR3 Length = 259 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 124/257 (48%), Gaps = 2/257 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 + ++ + L+R+ + + AP + +VP RVK GL+ + + + + Sbjct: 2 INYSFSIANFEYFLLILVRIASFVYIAPFFGDNAVPARVKTGLSAFVALFMYNIIERPQL 61 Query: 64 P-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 V + L V++ + G+ +GF + V AG +I + +GLS AT +P+ + Sbjct: 62 SYVSAVGFAVLVVKEGITGLLIGFAANICNSIVIFAGNLIDMDIGLSMATEFNPSMNSET 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL-NSNAFLALTKAGSLIFL 181 V + L+L L + H +LI + D+F +P+GG N +TK +F+ Sbjct: 122 TVTGNFYYYVVLVLLLVSDMHTYLIRAVCDSFSVVPLGGAQFQFDNMLSTMTKYMGDMFV 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 G + LP+ ++ +N LG++ ++APQ+++F +G L + G ++ ++ LI Sbjct: 182 IGFRIFLPVFACMMIMNCILGIMAKVAPQMNMFSVGIQLKIIAGFIVLFLIVYLIPNIAN 241 Query: 242 HLFSEIFNLLADIISEL 258 + +EI ++ II + Sbjct: 242 FIITEIKTMVVSIIDGM 258 >UniRef50_A5P6J2 Flagellar biosynthetic protein fliR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J2_9SPHN Length = 261 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 2/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + + + R+ A + AP SVP V++ + + +A +P Sbjct: 4 IDFGLGALEQDMWRVVFLMTRIGAALLAAPFFGATSVPMAVRVSITGALAIFVATWMPEV 63 Query: 62 DVP--VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 P + S L +++IG+ALGF +Q AFAA A E+IG MG+S A D Sbjct: 64 QTPEAILSLEGLLAIAGEVVIGLALGFVLQLAFAAPTIAAELIGGGMGMSMAVSQDAMGG 123 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + ++ L+FL+ HL ++L+ +++ P G L + F A+ S + Sbjct: 124 GTTTSFGQYFVIVLTLIFLSTGAHLHWVALVAESYSAFPPGQTWLGAERFAAIAGFASFM 183 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + +ALP+ +LL + + G+L+R AP L++F +G P + G++ + PLI Sbjct: 184 FETAIRIALPVTLILLLVQVITGILSRSAPSLNLFALGLPAGVLAGMAALIISAPLIYDQ 243 Query: 240 CEHLFSEIFNLLADII 255 L ++ + +I Sbjct: 244 FAGLVADALDQTESVI 259 >UniRef50_C7RLB3 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RLB3_9PROT Length = 261 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 94/259 (36%), Positives = 154/259 (59%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +T+ + +W+ +F+PL RVLAL++ AP + ++P RV+L L + IT IAP LP Sbjct: 1 MISLTTAEINAWVVAFFFPLARVLALLAAAPPFNNPALPARVRLALGLAITIGIAPVLPL 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S + + Q+++IG A+GF M+ F+AV AG I+ L+MGL FA+ DP + Sbjct: 61 MPALDPASGAGMLILAQELIIGTAMGFAMRLVFSAVDMAGNIVSLEMGLGFASAYDPQTA 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 V++ M +LALL+F+ NGHL +I+ L +F +PIGG L + + +L + +++ Sbjct: 121 GQTAVVSEFMGLLALLVFMAINGHLMVIATLTHSFSVIPIGGPRLGATTWSSLANSAAIV 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F GL L LP+I L+ NLAL +L+R APQL++ IGFPLT+ +G + + + + Sbjct: 181 FSAGLFLVLPIIVALMISNLALAILSRAAPQLNLMAIGFPLTIALGFAALLFGLSYMGTP 240 Query: 240 CEHLFSEIFNLLADIISEL 258 + LF + + + Sbjct: 241 LQELFENGLQSMLGHFAVV 259 >UniRef50_A2WHV1 Type III secretory pathway component EscT n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WHV1_9BURK Length = 256 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 95/250 (38%), Gaps = 4/250 (1%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67 WL R+ + P L + + + +++ P + + + Sbjct: 8 DVHGWLLAAALGFARIGPIFFMLPFLDNNVLTGSARNAVIVIVALGFWPPPLNTVIELGT 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L Q++ IG LG + + F AG +I Q G +F++ VDPA+ ++ LA Sbjct: 68 LPYLAAVAQELTIGAVLGALLAWPFWVFHAAGSLIDNQRGATFSSSVDPANGIDTSELAN 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTL-PIGGEPLNSNAFLALTKAGSLIFLNGLML 186 +++ ++L G + + ++ P+ G L A + A + + Sbjct: 128 FLNLFVGAVYLHNGGLDVFVRAIDGSYRLCDPLQGCALEWTAATQIIDAVIVKAVVVA-- 185 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 P+I LL ++LGLL R PQ++ F + + V ++ M + S Sbjct: 186 -SPVIALLFLCEMSLGLLGRFTPQMNPFSVSMTVKSVVVFGMLLIYMSPLFSGEIIALSP 244 Query: 247 IFNLLADIIS 256 + + + Sbjct: 245 TLDDIRAFLK 254 >UniRef50_C0C1N5 Flagellar biosynthetic protein fliR n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1N5_9CLOT Length = 257 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 1/247 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFAL 71 ++ L+R+ + PIL +++P K GLA+++ + P PA + + Sbjct: 9 FLVFTLVLMRMSGFVFLNPILGRKNIPAVFKTGLALVLALVVYPQAEPAGEEVTSAVVYA 68 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L +++ +G LGF MQ V AG +I QMGLS AT D + + + I+ + Sbjct: 69 VLLLKEFALGYLLGFVMQLFDMVVSFAGSVIDFQMGLSMATVYDAQNGTQIALTGNILQI 128 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 LLLF +GHL L+ +L+ + +P L + + A+ + + + + LA P+I Sbjct: 129 YYLLLFFAVDGHLALLKILMTSQDIVPYAALKLGTGSAQAVLQIFTECVVLAVKLAFPII 188 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 + +A GLL R+ PQ+++FV+ L + +G+++M L+ + + + S++ L Sbjct: 189 AFEFLVEVATGLLMRIIPQINLFVMSIQLRVIIGLAMMVFLISPAGDYLKGIISQMMQGL 248 Query: 252 ADIISEL 258 D++ + Sbjct: 249 QDVLRTV 255 >UniRef50_Q2BJ96 Flagellar biosynthetic protein fliR n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ96_9GAMM Length = 256 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 146/256 (57%), Gaps = 1/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML+++ Q W+ + WPL R+ + P+L + V R++L LA+ +T IAP LP Sbjct: 1 MLELSILQIEQWVAAFLWPLFRIGSFFMAVPLLGSQLVNARIRLMLALAVTAVIAPMLPE 60 Query: 61 NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 S + + QQ+++G LGF Q + G++I +QMGL FA+ DPA+ Sbjct: 61 MPAFNGLSVESYLIIAQQVIVGAMLGFLFQVFYQVFVLGGQMIAMQMGLGFASMTDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +++ +L + L +++F+ NGHL +I ++V +F LP+ + ++ ++F+ + +G+ + Sbjct: 121 ISVVMLGQFYLTLIMMIFVALNGHLIMIEIVVRSFEVLPVSLQAIDRDSFMKVALSGTWM 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F +++ALP +T LL +N+A G+++R APQL+I +GFP T+ +G+ + + Sbjct: 181 FSAAMLMALPAVTALLVVNMAFGIMSRAAPQLNILAVGFPFTMVLGLFINWVNLGGFLDQ 240 Query: 240 CEHLFSEIFNLLADII 255 + + + + +++ Sbjct: 241 YMRISVFVLDYIENLL 256 >UniRef50_D2TZ37 Type III secretion apparatus protein SpaR,YscT,HrcT n=1 Tax=Arsenophonus nasoniae RepID=D2TZ37_9ENTR Length = 256 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 2/239 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 ++L+ R+ + S P LS + +K L++ I + P + S Sbjct: 11 IYNFLSHLVIIASRIFPIFSIIPFLSNNILSPTIKFPLSLFIAMGVWPYDAYELPQLESM 70 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L + +++++IG+ + + F ++ G II Q G + ++ +DP + ++ LA Sbjct: 71 GYLVILLKEVIIGLMIALFISLPFCVLQITGNIIDNQRGATLSSSIDPINGVDTSELANF 130 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 ++ A+ LFL +G + + + ++ S + S +MLA Sbjct: 131 FNLFAVTLFLANDGVITTLEIYHHSYRLWLPFSMKFPS--ISNILTFISYAISKAVMLAS 188 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PLI + L + LGLL R APQL+ F I + + +++ + EI Sbjct: 189 PLIIIFLVTEIMLGLLGRYAPQLNPFSIALTVKSLICFTILMIYFSSSFSETVLIMQEI 247 >UniRef50_A1SEN1 Flagellar biosynthetic protein fliR n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN1_NOCSJ Length = 253 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 2/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 L Y +R+++ ++ P S R+VP K+ L + + FA P +P+ + L Sbjct: 10 LVAYLLASVRIVSWLAVVPPFSGRAVPMMAKVVLGLGLAFAAVP--DGGSIPLSTVGLLL 67 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 Q+LIG+A+GF Q F A+ AG +I + G S A+ DP S V + ML Sbjct: 68 NVGTQVLIGLAMGFVTQLLFGAIAAAGSLIDVFGGFSLASGFDPLSMNANTVFGKFHQML 127 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A +L GHL +I L+ TFH LP+G P A L A + F + +ALP+I Sbjct: 128 ATVLLFASGGHLLVIGGLLRTFHFLPLGTSPEWQTAPDVLLTAFGMFFTTAVQIALPMIA 187 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 +L +L L LL ++APQL+ F + FP+ + + + L+ P++ + L ++ Sbjct: 188 VLFLSDLGLALLTKVAPQLNAFNVMFPVKVGMTLLLVGLWFPVLPQAVDRLVDLSTQAMS 247 Query: 253 DIISE 257 + Sbjct: 248 SLAGA 252 >UniRef50_C6XLQ1 Flagellar biosynthetic protein fliR n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XLQ1_HIRBI Length = 247 Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 2/243 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFS 67 + + R+ +++ AP E SVP + +L A++ T A+ P+L VP Sbjct: 1 MPYAWAGSLLFCRIGSVLMLAPGWGESSVPAQFRLSAALLATMALVPNLIDQMPPVPELV 60 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + L + +ILIGI +G + +A++ G+IIG+ GL+ AT DP + ++ Sbjct: 61 SQSALLIISEILIGIMMGAGARILMSALQVGGQIIGISSGLAMATQFDPTIGSSSAIIGV 120 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 M M A++L + H ++ VD++ G +A A S F GL +A Sbjct: 121 FMSMTAIVLIMIAGIHRDMLQAAVDSYQLFKPGEPLPIGDAAQWELGAMSSAFKLGLQIA 180 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ + L NL++GL+ R+ PQ+ +F I P+ + +G+S+M ++ Sbjct: 181 APILVVALVFNLSIGLVARLIPQVQVFFIAMPIQVMLGLSIMTFILGGGLLVWLDALGRY 240 Query: 248 FNL 250 L Sbjct: 241 ARL 243 >UniRef50_C4Z5H7 Flagellar biosynthetic protein fliR n=3 Tax=Bacteria RepID=C4Z5H7_EUBE2 Length = 257 Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 127/255 (49%), Gaps = 1/255 (0%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 L+ L+ L+R+ + + AP + +VP RVK+G + +T + P V Sbjct: 2 NFTFALAQFELFVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVE 61 Query: 65 VFSF-FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 + V++I++GI LG F + AG+II + +G+S A DP + + + Sbjct: 62 YNGMIEYAIIVVEEIIVGILLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVG 121 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++ + +LL + H +L+S +V+T+ +PIGG + + + S F+ G Sbjct: 122 IMGNFYYYMMMLLLIISGMHQYLVSAIVETYRVIPIGGVKFGAGIYTGIIGFVSDFFVIG 181 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 +ALP+ +L LN L +L +++PQ+++FV+G L + VGI ++ + ++ + Sbjct: 182 FRIALPVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISMLPSVSNFI 241 Query: 244 FSEIFNLLADIISEL 258 EI + A ++ + Sbjct: 242 LDEIEKMFAILVRGM 256 >UniRef50_Q4JMS6 Flagellar biosynthetic protein fliR n=1 Tax=uncultured bacterium BAC17H8 RepID=Q4JMS6_9BACT Length = 270 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 130/259 (50%), Gaps = 1/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M + L YF LR+ A + +API R +P +V++ +A + AI +P Sbjct: 9 MPGIDLHFVTGVLLQYFLASLRIGAFLLSAPIFGARWLPLKVRIIMAFTLAAAIVGDVPD 68 Query: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + S + + +I IG+ G T+ FAAV AGE I GL +A VDPA+ Sbjct: 69 VGTDLLTSSVGVSMMFIEIAIGLTAGLTLTIWFAAVLLAGEKIASSAGLGYAAQVDPATG 128 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 PV+++I+ + L++FL+ +GHL I +++++ LP+G + A + Sbjct: 129 GQTPVVSQILYLFLLVIFLSIDGHLLAIGTMLESYRILPVGASVAPEVLIASGITAAGSM 188 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 FL ++ LP+ T+LL +N+A+G++ R APQL++F GFP++L L+ Sbjct: 189 FLAATIIMLPITTVLLMINVAIGIITRSAPQLNLFSFGFPISLLAVFLLLFFSAGAFGTS 248 Query: 240 CEHLFSEIFNLLADIISEL 258 + L L D+I L Sbjct: 249 SQSLIDSALTSLQDLIGGL 267 >UniRef50_A4YB60 Flagellar biosynthetic protein fliR n=18 Tax=Gammaproteobacteria RepID=A4YB60_SHEPC Length = 259 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +TS + + ++WP R++ P+L VP V++ LA+ I +AP LP Sbjct: 1 MLSLTSTEISMLIGGFWWPFCRIMGAFMIMPLLGNAYVPVMVRIFLALSIAALLAPMLPP 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 V S +L+LA++Q+LIG L + + G I+ +QMGL+ A DPA+ Sbjct: 61 VPPVDAISLASLFLAIEQLLIGFMLALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + P+++ + L+FL NGHL I+++VD+F PIG + L + + Sbjct: 121 DSSPIISEWFQIFGTLIFLALNGHLVAINIIVDSFRLWPIGHGIFELP-LMGLVSRLAWL 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F LMLA+P + +L +N+ G+L+R AP L+IF +GFP+T+ +G+ + + I Sbjct: 180 FAASLMLAIPAVLAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSR 239 Query: 240 CEHLFSEIFNLLADIISEL 258 L + + I + Sbjct: 240 YSDLCLDALTAMYQFIGGI 258 >UniRef50_B0P9X4 Flagellar biosynthetic protein fliR n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X4_9FIRM Length = 254 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 126/249 (50%), Gaps = 2/249 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 + ++ L Y +R+ A+I T P+LS R+VP V+ GL ++TF IAP L + Sbjct: 3 DSVMAGLPAYMLVFVRMAAMIGTNPLLSRRNVPAAVRAGLTALLTFLIAPGLTVAPMDQM 62 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + + +++ L+G A G+ Q + + AG+++ +Q GLS A DP +++ + V Sbjct: 63 T--LVLAMLKEFLVGFACGYVFQIFYYMLFFAGDVMDMQFGLSMAKVFDPGTNMQVSVSG 120 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 +++L L N HL L+ + +F +P G P + + + F L L Sbjct: 121 NFLNILFSLFIFATNSHLLLVRIFATSFQIVPAGFTPFSPHVSGYIADLFIEAFSLALRL 180 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 ALP I + L ++LG+L ++ PQ+ +FVI F L + + + ++ ++ F ++ + Sbjct: 181 ALPFIAVEFVLEVSLGILMKLIPQIHVFVINFQLKVFLSLVMLLTFAAPLSSFLDNYMNY 240 Query: 247 IFNLLADII 255 + + ++ Sbjct: 241 MLECIQKVL 249 >UniRef50_A9KNE1 Flagellar biosynthetic protein fliR n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE1_CLOPH Length = 255 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 130/251 (51%), Gaps = 1/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND-VPVFSF 68 + L +F L+R+ A I T P S ++VP++VK+GL++ + + ++P ++ V Sbjct: 5 VEQLVFFFVILVRISAFIYTGPFFSLKNVPQKVKIGLSLTLAIILNQTIPYSELVYEGVI 64 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + V + L G +GF F + AG+++ +++G S DP S+ + + A Sbjct: 65 GFAIVIVGEALAGAIMGFFSNICFQILSLAGQLMDMEIGFSMVNEFDPISNAQVTITANF 124 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 +L L N H ++I LVD++ +P+GG LN + + + F+ + L Sbjct: 125 YHYAVMLFLLITNMHHYIIKALVDSYQVIPVGGAKLNPLIYTVMVQFVVDFFVIAFRIIL 184 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P+ +L +N+ L +L ++APQ+++FVIG L + +G ++ + +I + +F+E+ Sbjct: 185 PIFASMLIVNVVLAILAKVAPQMNMFVIGLQLKVLIGFIVLLFMTLMIPSVADFIFTEMM 244 Query: 249 NLLADIISELP 259 +L IS L Sbjct: 245 GMLKSAISFLK 255 >UniRef50_Q3V817 Flagellar biosynthetic protein n=1 Tax=Symbiobacterium thermophilum RepID=Q3V817_SYMTH Length = 259 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 113/238 (47%) Query: 24 LALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIA 83 + + + AP+ S R VP +V++ L+ ++ F + P++ L A+ ++++G+ Sbjct: 19 MGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLV 78 Query: 84 LGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGH 143 +GF + ++ AG ++ L+MG + A DP + VL + AL+ F+ +GH Sbjct: 79 IGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGH 138 Query: 144 LWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGL 203 WLI ++ +P GG + + L + + + + L LP + ++L +A + Sbjct: 139 HWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAV 198 Query: 204 LNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI 261 LNR QL+IF IG VG+ L+ L+P LF F I+ + + Sbjct: 199 LNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFEAGFREALRILELMRAV 256 >UniRef50_C2ED98 Flagellar biosynthetic protein fliR n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED98_9LACO Length = 252 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 114/249 (45%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + + + RV + +S APILSER+ P KL L + + A + V Sbjct: 3 MVQIQILGLIACRVFSFMSVAPILSERNFPNLCKLILGGGLILSAFSLAAAFEEEVALAV 62 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + +AV++ + G+A+G+ + F V G+ I Q G A DP + ++ Sbjct: 63 FILMAVKETIFGLAMGYLCRLVFFGVMITGQFIDFQDGFIMAQAYDPTMQSSTSQFGKMY 122 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 LA+++F + +I L+ +F + +G L + + K + F + P Sbjct: 123 YWLAIMVFFASGLYRQMIRGLMTSFDIVSLGYPTLTDESIGGIVKLFAKTFEMAFNMGAP 182 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I +L +++ LG+L+R PQL++ ++ + TV + ++P + F FSE+ Sbjct: 183 IIISILVIDIVLGILSRSIPQLNVLMLSLNVKTTVSFIISMLVLPNMVDFLASNFSEMIQ 242 Query: 250 LLADIISEL 258 +AD I + Sbjct: 243 NMADFIKSI 251 >UniRef50_C6WJP4 Type III secretion system inner membrane R protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP4_ACTMD Length = 256 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 2/254 (0%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 + ++ L R A + P + +++P VK LA+ + + P L A VP Sbjct: 2 NLDIGVNVLVALLLAATRSAAWLMVCPPFNGKAIPMTVKGMLAVGLALPVVPRLSAGSVP 61 Query: 65 VFSFFALWLAVQQ-ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS-HLNM 122 ++L +A + +++G LGF FA V+ AG+++ + G S A DP S N Sbjct: 62 SLDTWSLVIAAGEQVVVGAGLGFLTAVIFAGVQAAGDLLDVFGGFSLAFAFDPMSFSGNN 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 VL R +LA L H +I ++ +P+ G LT + L+ Sbjct: 122 AVLGRFYGLLATTLLFVTGSHQVIIRGFTLSYDAIPLDGGLSLGRLGTLLTTGLGQLLLS 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 +A PLI +L ++ LGLLNR+AP L+ F IGFP + + + L+ MP++ E+ Sbjct: 182 AAQIAGPLIVVLFCADVGLGLLNRIAPALNPFQIGFPAKIGLTLVLVGLTMPMLPMSVEN 241 Query: 243 LFSEIFNLLADIIS 256 + + + + I Sbjct: 242 IAKHAASAVMEAIG 255 >UniRef50_B3PF02 Flagellar biosynthetic protein fliR n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PF02_CELJU Length = 261 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 92/254 (36%), Positives = 160/254 (62%), Gaps = 1/254 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 ++ +Q + ++ Y WP+LR+ A P++ R+VP R++L L ++ F + P LP V Sbjct: 6 ISEDQLMQFIGQYIWPMLRIGAFYFAVPVIGARTVPARIRLILMLLTVFLLVPVLPPAPV 65 Query: 64 -PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + S L L Q++LIG+ALGFTMQ AG+ I ++MGL FA DP+S +++ Sbjct: 66 VSLLSLAGLMLIAQEVLIGLALGFTMQVVLHVFVLAGQYIAMKMGLGFAAMNDPSSGVSV 125 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 VL++ +L+ LLFL+ NGHL ++ L++D+F PIGG+ ++++A++ + + GS +F Sbjct: 126 TVLSQFYLLLSTLLFLSTNGHLVVLQLMIDSFRFFPIGGDGISTSAYMVIVQMGSWMFSA 185 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 L++ALPL T L+ +N++ G+++R APQ+++F +GFP+TL G++LM + P Sbjct: 186 ALLIALPLFTSLMIVNMSFGVMSRAAPQMNVFTVGFPITLVFGLALMYFSLGNFLPLYME 245 Query: 243 LFSEIFNLLADIIS 256 L E +L +++ Sbjct: 246 LMEEGIGILRNLVE 259 >UniRef50_C0GJG4 Flagellar biosynthetic protein fliR n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJG4_9FIRM Length = 253 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 126/250 (50%), Gaps = 2/250 (0%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMIT--FAIAPSLPANDVPV 65 L ++ F +R+ ALI+ P + R +P K+G A + +A S ++P Sbjct: 1 MVLEQWSVLFLIFVRLSALIAVLPFFTWRGIPALPKIGFAGVFAYLIFLASSPQEFEIPE 60 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 ++ + ++L G+ALGF + FAA R AG+++ +Q GL A+ DP + + Sbjct: 61 HFYYYVLAVGSEVLFGLALGFLVLLIFAAARIAGQMVDVQAGLMMASVFDPQFGSQVTLF 120 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + + AL+ +LT NGH L + + + GG + + + +F+ Sbjct: 121 GQFYYLFALVFYLTVNGHHMLFMAIARSIELVTPGGVVFSPQLIPNVMQFIFQMFIIAFQ 180 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA+P++ +L+ +LALGLL++ PQL +F++G PL + V + ++ + P +A E +F+ Sbjct: 181 LAVPVVAVLIFSDLALGLLSKTVPQLHVFMVGMPLKVGVALFIIYLIFPYLAQVLETVFA 240 Query: 246 EIFNLLADII 255 + + + Sbjct: 241 RMQEDIIHLF 250 >UniRef50_A0NPF3 Flagellar biosynthetic protein fliR n=3 Tax=Rhodobacteraceae RepID=A0NPF3_9RHOB Length = 257 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 114/252 (45%), Gaps = 4/252 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS---L 58 + + + + ++ R+ ++ P L E ++P R +L +A+ +T + P Sbjct: 1 MTIQLDYLPNVATIFMLMFARLGTMVMLLPALGESTIPTRFRLTIALALTMVLYPVGSQY 60 Query: 59 PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 +V ++ + L ++ IG+ +G + + ++ AG I+ Q GL+FA D A+ Sbjct: 61 YPVEVTSNTYRMIALLFGEVAIGLGIGLCAKMITSVLQIAGMIMANQSGLAFALGTDFAN 120 Query: 119 -HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + + +L + L + H +I+ L D+F P G P + T+ + Sbjct: 121 QGQQGALFGNFLSILGITLVFVSDSHYLVIAALHDSFMIFPPGLAPPVGDFSQNATETVA 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 +F + ++ P + + L LGLLN++ PQ+ IF I P+ + +G+ ++ L+ + Sbjct: 181 HVFSIAVRMSAPFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGLFMLMVLITTLM 240 Query: 238 PFCEHLFSEIFN 249 F F E Sbjct: 241 MFYLDHFQEALG 252 >UniRef50_A6F9S0 Flagellar biosynthetic protein fliR n=1 Tax=Moritella sp. PE36 RepID=A6F9S0_9GAMM Length = 260 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 142/259 (54%), Gaps = 2/259 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +S + + + +WP R+++ + PI + + V++ A+ + I+P +P Sbjct: 1 MLNFSSIELMLIIGKIWWPFFRIISALWLLPIFGDTRITPSVRILFALTLAILISPVVPV 60 Query: 61 ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 D + FS ++ LA++QIL G+ G ++ F ++ GEI+ +QMGLS A DP+S Sbjct: 61 VDNINPFSLGSIILALEQILFGLFFGLSLTMLFTMMKLIGEILSMQMGLSMAVMNDPSSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 + V + ++ + A LLFL+FNGHL ++ +LV++F T PIG N + K S + Sbjct: 121 GSSHVNSHLLTIFATLLFLSFNGHLIVLDILVESFVTWPIGSSIYLLNI-DIILKLVSWM 179 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F+ LMLA+P I +L +N+ G++NR AP L+++ +GFP+ + +GI + + +I Sbjct: 180 FMAALMLAMPAIVAMLLVNITFGVMNRSAPSLNVYSLGFPMGMLLGIICLGLVFRVIPNR 239 Query: 240 CEHLFSEIFNLLADIISEL 258 I + I L Sbjct: 240 FFDFTVFILEQMRFISGGL 258 >UniRef50_C4K6D9 Type III needle complex export protein n=2 Tax=Candidatus Hamiltonella defensa RepID=C4K6D9_HAMD5 Length = 254 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 2/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + +L+ L + + R++ P S + ++L + M++ F++ P Sbjct: 1 MMIDFTNHFLNELIVVLFASARLMPAFFLLPFFSNNVLTGSLRLPITMLVAFSLWPYQEK 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P +F L L +++LIG+ L F + + F + G II Q G + ++ +DP S + Sbjct: 61 VLPPFETFLYLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + L+ ++ A +FL G + ++ + AF + + + Sbjct: 121 DTSELSNFFNLFAAAVFLQGGGMTLFLESYHQSYQICSP--LRDCTFAFSPIFAILTKLM 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L+LA P+I +LL LGLL+R APQL+ F I + + ++ P Sbjct: 179 SKSLILASPVIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIPDQ 238 Query: 241 EHLFSEIFNLLADIIS 256 + S LL Sbjct: 239 INSLSFYSELLPIWFK 254 >UniRef50_B1K3A1 Flagellar biosynthetic protein fliR n=3 Tax=Betaproteobacteria RepID=B1K3A1_BURCC Length = 265 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 1/254 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ Q L N FWP R+ A ++ +PIL + VP R++L +A+ + AI P +P Sbjct: 1 MEIFLAQLLPLANTIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPTM 60 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V + + +Q+LIG LGF A++ G I Q+GLS A DP + Sbjct: 61 PVIDLLQLEGVAAMAEQVLIGGLLGFVFHLVLCALQIFGTIASSQLGLSMAQINDPMNGQ 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 VL +M ++ +LLF +GHL L S++ +F P+G + +A L A IF Sbjct: 121 MADVLTSVMYVVFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + LALP++ L + + LGLLNR+AP L+IF +GF +T G+ L+ L+P + Sbjct: 181 SAAVALALPVMFATLVVQVGLGLLNRVAPALNIFALGFSITTMFGLLLLTLLLPSLPDHY 240 Query: 241 EHLFSEIFNLLADI 254 + + L + Sbjct: 241 GRMVEHVLELYDRL 254 >UniRef50_B8DMR4 Type III secretion protein SpaR/YscT/HrcT n=5 Tax=Desulfovibrio RepID=B8DMR4_DESVM Length = 278 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 9/265 (3%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 L + R+ + AP L+ V ++++ L + P + Sbjct: 14 FDQLGLFDHLLAVVAGMPRLFMVAQVAPFLAGSVVTGQLRMVLVFACYLPVHPVILGQLP 73 Query: 64 PVFSFFALWL------AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 F L +++ L+G+ LG AF V++AG +I Q G S A DP Sbjct: 74 KGSVFDLTLLGHYGALVLKESLMGLVLGLLAGIAFWTVQSAGFLIDNQRGASMAEESDPM 133 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNS---NAFLALTK 174 S + + LF T L + LL ++ P+ + L Sbjct: 134 SGEQTTPTGAFLLQTMMYLFYTSGAFLAFLGLLYASYEIWPVPSLAPLAWSIEVPLLFAG 193 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 + + + ++LA PL+ L +++LGL+NR A QL+++V+ P+ V L+ Sbjct: 194 RVAWLMSHMVLLAGPLVVACLLADISLGLVNRFASQLNVYVLAMPVKSAVASLLLVLYFG 253 Query: 235 LIAPFCEHLFSEIFNLLADIISELP 259 +A LF+EI L + LP Sbjct: 254 ALAAKTPDLFAEIAADLQRLQGLLP 278 >UniRef50_Q45975 Flagellar biosynthetic protein fliR n=3 Tax=Caulobacter RepID=FLIR_CAUCR Length = 251 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 2/242 (0%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSFF 69 + + RV A++ T P + ++++P R++L A+++ +AP + +P Sbjct: 9 QVYVAALVFARVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVGPIPSTLGG 68 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + ++LIG+ +G ++ ++ TAGEII +Q LSFA +P+ + +A + Sbjct: 69 LGGAVIHEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFL 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 ML L L + + H I+ +V ++ P ++A + + F G+ LA P Sbjct: 129 SMLGLTLVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLGVQLAAP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I L NLA GL+ R+ P IF + PL++ +G+SL+A + IA + E+ + Sbjct: 189 VIVFSLVFNLATGLVGRIMPAFQIFFVASPLSVILGLSLLALSLSGIAMVWTDRYRELLD 248 Query: 250 LL 251 + Sbjct: 249 IF 250 >UniRef50_Q7UXG3 Probable flagellar biosynthetic protein fliR n=1 Tax=Rhodopirellula baltica RepID=Q7UXG3_RHOBA Length = 264 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 7/259 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--- 58 +Q + + L L L R+ L+ P + VPKR++ LA+++T + P+L Sbjct: 1 MQAFVDWIFNHLVLGTLVLTRLGMLLMAMPAIG-VGVPKRIRALLALVLTAILMPTLAAQ 59 Query: 59 ---PANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVD 115 P+ ++ LIG+ +G T Q ++ AGE I G+ +D Sbjct: 60 CDHPSMPTIDNLPELAVAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSID 119 Query: 116 PASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKA 175 P + +MP LAR++ ML + L H ++ LLV++F +P G + A+ Sbjct: 120 PTTSSSMPALARMVGMLVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVV 179 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 +G+ +A P+I LL NL GL++R PQ+++ IG + + + A + Sbjct: 180 MGNSMASGVRVAGPVIAALLLANLVTGLISRTLPQINVLAIGLSINALAMLVVTALTIGS 239 Query: 236 IAPFCEHLFSEIFNLLADI 254 +A + + L+ I Sbjct: 240 VAWLFQEDLTANVERLSSI 258 >UniRef50_C1SNG7 Flagellar biosynthetic protein fliR n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG7_9BACT Length = 257 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 131/254 (51%), Gaps = 1/254 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 + + + R+ A++ T P+ + +++ LA++I I PSL A Sbjct: 2 FEFLYYTDTFVSFLMAVARIGAILFTVPVFGSNVIKPQIRFVLAILIAMVIFPSLEAMPY 61 Query: 64 -PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + + + + ++IL+G+ +G F F + G+I+GLQMG S +DP S+ + Sbjct: 62 GNLPTGIIIVMVFKEILVGVCIGILSNFLFIGAQLGGQIVGLQMGFSVVNVMDPQSNTQL 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 +++ +++ LL F+ GH ++ + ++F ++PIGG +N AF + K S IFL Sbjct: 122 SIISSFLNIGMLLFFIAVGGHYLVLGAIAESFRSIPIGGAEINPIAFNYIAKLFSYIFLI 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 + + P I LL + +G++ ++APQ+++ ++GFP + +G+ ++A M E Sbjct: 182 AIKIMAPAIITLLIFSTVIGVIGKLAPQINLMIVGFPAKIAIGLIIIALGMNYFFIAFEK 241 Query: 243 LFSEIFNLLADIIS 256 + F +A++I Sbjct: 242 ILLRYFEEIANVIR 255 >UniRef50_Q30PK9 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30PK9_SULDN Length = 254 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 127/254 (50%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + +++ + R AL PI S ++P +K LA T S+P Sbjct: 1 MTWPQVFSDTYIVGFILLFFRFAALFIAVPIFSHNNIPISIKTSLAFFFTIVFYSSMPPL 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + + + + ++L G+A+G +Q AF A+ AG I MG S A+ +DP S ++ Sbjct: 61 TMVITVPSIVMAILSELLFGLAIGVILQIAFNAITFAGGQISFMMGFSMASAIDPQSGIS 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 MP++++ + ++AL++ + H W++ + + +P+GG ++ N F + KA S +FL Sbjct: 121 MPIISQFLSLMALMMLFAIDMHHWILLFIDSSLQNIPLGGFVMSENLFTYIIKAMSNMFL 180 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 G M+A P+ L L ++ G+L + PQ ++ VIGFP+ + V +++ A + I + Sbjct: 181 VGFMIAFPITALGLLADIIFGMLMKTMPQFNLLVIGFPIKIMVSFAVLIATISAIMLIIK 240 Query: 242 HLFSEIFNLLADII 255 E FN L Sbjct: 241 GQMVEAFNFLEMFF 254 >UniRef50_C6B1H0 Type III secretion system inner membrane R protein n=10 Tax=Rhizobium RepID=C6B1H0_RHILS Length = 250 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 3/239 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV---FSFF 69 + F R+ + P S VP ++++ +A ++ A+ P L P + Sbjct: 9 VLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYPAVHTGAGT 68 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + L + LIG+ G + ++ A II + +G + D L+ + Sbjct: 69 YIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADILEDTPETSLSGFI 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 +++ + H + L+D++ T+P GG ++ T L L+ P Sbjct: 129 TFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTYIMLRLSSP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 + L N+++G +N++APQ+ ++ I P L G+ L+ + + F I+ Sbjct: 189 FLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFGQSFGSIY 247 >UniRef50_Q1MQX3 Type III secretion component protein SctT n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQX3_LAWIP Length = 271 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 9/255 (3%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV----- 63 + R+ +I P + V ++++ + ++P+L A Sbjct: 12 VYDHFIAFLIGTPRLFMIIQVVPFMGNNIVTGQLRVVVVFSFYLLLSPALVAQLPHIPEV 71 Query: 64 -PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 P L + +++ IG LG+ F + + G I Q G + A DP S Sbjct: 72 DPSLLPRILAIVIKEGFIGFFLGYLGSMVFWMIESVGLFIDNQRGAAMAAQTDPLSGSQT 131 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNS---NAFLALTKAGSLI 179 L + + +F T + ++L+ T+ P S + K + Sbjct: 132 SPLGSFLFQCLVYIFFTSGAFITFLTLIYKTYEFWPPHEFIPMSWKMRLPELIIKQVDWL 191 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 ++LA P+ L +++LGL+NR A QL+++V+ P+ V L+ L+ Sbjct: 192 MAYTMLLAGPIAVACLLTDVSLGLVNRFASQLNVYVLAMPIKSAVAAFLLIFYFKLLLEK 251 Query: 240 CEHLFSEIFNLLADI 254 LF +L I Sbjct: 252 ATFLFKPFETVLFQI 266 >UniRef50_D1R8P1 Putative type III secretion inner membrane protein SctT n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P1_9CHLA Length = 285 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 8/260 (3%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPV 65 + L ++ L R+ +I+ +P L R +P VK+ LA+ + P L Sbjct: 22 EVEGVLTIFLLFLARMFPIIAQSPFLGARVLPHPVKVSLAISLFVIFFPQMLLLTTTPIG 81 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 F+F AL L ++ILIG LGF + F+ V+ AG II Q G + DP + Sbjct: 82 FNFNALLLLFKEILIGFILGFIISIPFSIVQNAGMIIDHQRGGASLMVNDPTIQNQSSPV 141 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN------SNAFLALTKAGSLI 179 +++M+ + LF + I + ++ +P S + + + Sbjct: 142 GTLLNMVLIFLFWVVDIPFLFIDAIFTSYEIVPPDQFINPNFFDAASPFRKTQIELLNKV 201 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 + + LA P + +L ++ LG++NR+APQ+ I +G PL +G+ ++ L+ Sbjct: 202 MVVSIQLATPALLAILMTDVFLGIVNRLAPQVQITFLGMPLKSLLGLGVICFGWNLLTTQ 261 Query: 240 CEHLFSEIFNLLADIISELP 259 N + D+ + Sbjct: 262 MVKDSYVWLNSINDVFKLMK 281 >UniRef50_B4RGX9 Flagellar biosynthetic protein fliR n=3 Tax=Caulobacteraceae RepID=B4RGX9_PHEZH Length = 253 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 2/245 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFSF 68 + R+ A+I P L E +P R++L A+ + + P L A +P + Sbjct: 8 QQVFAAGLVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAG 67 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 ++++LIG+ +G ++ ++ TAGEI+ L LSFA +P P L+ Sbjct: 68 ALAGEVIRELLIGLMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTF 127 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + ML ++L LT + H ++ LV ++ P G E +A + S F GL LA Sbjct: 128 LGMLGIVLILTTDLHHMFLAALVRSYAIFPFGREVPVGDAGQLAIQTTSRAFALGLQLAA 187 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ L L +N+A+GL+ R+ P +F I PL + +G+S+ A + +I + E+ Sbjct: 188 PVVVLSLIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWVDRYRELI 247 Query: 249 NLLAD 253 + Sbjct: 248 GMFLG 252 >UniRef50_B0SDH1 Flagellar biosynthetic protein fliR n=6 Tax=Leptospira RepID=B0SDH1_LEPBA Length = 260 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 125/259 (48%), Gaps = 4/259 (1%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVP 64 E ++ + + L+R+L L AP S S+ +++ + M++ + P + VP Sbjct: 2 EAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMPPVP 61 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + ++LIG+ +GF + F+A + AGE Q+G + +DP + ++P Sbjct: 62 GHMINFGIMILSEMLIGVFIGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPA 121 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLN 182 + + +++A LFL H +LI L +F + I +NS + + A +F+ Sbjct: 122 IGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFTGKVNSGLYRLVEDAIGAMFVV 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 +ALP++ +L ++LA GL+ + A Q+++ + FPL + +G + A + IA Sbjct: 182 SFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMVQ 241 Query: 243 LFSEIFNLLADIISELPLI 261 + + ++ E P + Sbjct: 242 GIQISMDKASLLVREWPSL 260 >UniRef50_A9AP22 Type III secretion protein SctT n=18 Tax=Burkholderia RepID=A9AP22_BURM1 Length = 270 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 3/243 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 L + + R+L ++ P+ +E+ V V+ GLA++I +AP++ A + Sbjct: 8 FNDLAGTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQIAS 67 Query: 66 FSF-FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 F L ++ ++G+ L A++ G +I Q G A F DP Sbjct: 68 LPFVTWCVLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGP 127 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG--GEPLNSNAFLALTKAGSLIFLN 182 + ++ +A+ LF+T G L+ L ++ PIG G +S + + IF Sbjct: 128 TSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEW 187 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 + LA P+I +L+ + L +GL+ R PQL++FV PL + + +M +P++ Sbjct: 188 MVKLAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHA 247 Query: 243 LFS 245 L S Sbjct: 248 LLS 250 >UniRef50_B9L8B4 Flagellar biosynthetic protein fliR n=1 Tax=Nautilia profundicola AmH RepID=B9L8B4_NAUPA Length = 255 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 116/255 (45%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ + + Y +R+ + ++ P + ++P VK A ++ + P P Sbjct: 1 MEIINYLTPVNVVTYLLLFVRISSFLAFMPFFNYTAIPMNVKAAFAFWLSILLFPITPKF 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + L + ++ +G +Q F ++ AGE I MG + A +DP + + Sbjct: 61 AYEINIATVLLSVLNEVAFAFFVGMALQMVFDVLKYAGEQISFVMGFTLANVMDPNAGVQ 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++++ +A+++FL+F G I L TF LP G N + S FL Sbjct: 121 TTIISQFFTWVAVMMFLSFGGDHLEIMFLDKTFAMLPFGEFFSYHNVYEYFITYMSKYFL 180 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 G+ +A P+I + L ++ G++ + PQ ++ V+GFP+ +T+ ++ A++ + Sbjct: 181 LGIAMAFPIIAISLMGDIIFGMIMKTMPQFNLLVVGFPIKITISFMVLIAIIASLMQLFS 240 Query: 242 HLFSEIFNLLADIIS 256 + ++F L I Sbjct: 241 NEILQVFGALLRFIG 255 >UniRef50_Q0ANB4 Flagellar biosynthetic protein fliR n=2 Tax=Hyphomonadaceae RepID=Q0ANB4_MARMM Length = 250 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 110/247 (44%), Gaps = 2/247 (0%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPV 65 + + + R+ A++ P E S+P R +L A++ + P + +P Sbjct: 4 ELPALVYAAGLVFARLGAILMLLPGFGEPSIPVRFRLAFALLFCLILGPIIAPSLPVMPE 63 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + + +++IG+ +G + + AG++IG+Q GL+ A DP+ ++ Sbjct: 64 QPLAMAGIVMSELIIGLMIGAVARIFMSTAAVAGQVIGMQSGLAMAQSFDPSQGAQGALI 123 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + +++ L+L L N H L+ + +++ G P ++A A F G+ Sbjct: 124 STFLNLTFLMLLLATNTHHMLLQMAANSYQVFDPGSMPSLTDAADWALSAFIDAFRIGVQ 183 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA PLI L LALG+L+R+ PQ IF I P + +G+ ++A + ++ Sbjct: 184 LASPLIMYGLLFYLALGVLSRLMPQAQIFFIAMPSNIMIGLFILAIALGAMSAVWLERMQ 243 Query: 246 EIFNLLA 252 + Sbjct: 244 RFAMDMN 250 >UniRef50_D0WZK5 Flagellar biosynthetic protein fliR n=1 Tax=Vibrio alginolyticus 40B RepID=D0WZK5_VIBAL Length = 254 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 2/237 (0%) Query: 20 LLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND-VPVFSFFALWLAVQQI 78 RV A+ + P + +P V+ LA+ I P +P V +FS +L+LA +Q Sbjct: 15 FFRVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLFLAFEQA 74 Query: 79 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138 + G+ G + F G++I LQMGL A DP + L++ +L RI + + LLFL Sbjct: 75 IWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLLFL 134 Query: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 GHL +I +++ +F P+G + S + + +F + L LALP I +L N Sbjct: 135 ALEGHLLVIDIVIQSFVVWPVGSG-ITSLSLQGVVNIFGWMFASSLALALPAIVSMLLAN 193 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADII 255 ++ G++NR AP L+++ +GFP+T+ +G+ + + + L + L++ + Sbjct: 194 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTALVHDTIRHLSNFM 250 >UniRef50_C0QA54 Flagellar biosynthetic protein fliR n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QA54_DESAH Length = 262 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 2/245 (0%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFSFFA 70 L+ L RV ++ PI P VK GLAM+I+ + + + +P + Sbjct: 12 FKLFLLVLARVSIVLFMLPIFGTTMFPTMVKAGLAMVISMLLYSVVQLDPDLLPETAMGM 71 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 V + +IG+ LG ++ F + + AGE+IG QMG S VDP S N+ ++ ++ Sbjct: 72 GIFLVSEAMIGLTLGLCVRLFFGSFQLAGEVIGFQMGFSMINVVDPQSGANVSLMEQLAY 131 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 +ALL+FL NGH ++ LVD+F + G + GS +F+ + + P+ Sbjct: 132 WVALLVFLAMNGHHIMLLSLVDSFELVQPGSFVFQQIMVDKVIFLGSQMFILAIKIGAPV 191 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 I LL ++A GL + +PQ+++ ++ FPL + VG+ L + +I E L Sbjct: 192 IAALLFTSVAFGLTAKFSPQMNVMIVAFPLKIIVGLVLFGLSLEIIIIVARTYIIEFRAL 251 Query: 251 LADII 255 ++ Sbjct: 252 FLKLL 256 >UniRef50_Q2SH54 Type III secretory pathway, component EscT n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH54_HAHCH Length = 261 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 5/259 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPA--N 61 E L ++F R+LA+ P LS++S+ ++ G+A + P + + Sbjct: 2 NIELISHTLFVFFMSSARMLAMFMMLPFLSKQSLGGAMIRNGVAASFSLITYPLVEHGLD 61 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + L + V+++ IG+A+GF + F A+ + G I Q G + A+ ++P S Sbjct: 62 AQTLDGLHLLLIIVKEVGIGLAMGFVLVMPFWAIESVGFFIDNQRGATMASALNPLSGSQ 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLI 179 L ++ + LF L ++ L ++ P+ + + Sbjct: 122 TSPLGILLTQSLVTLFFISGTFLLMLYALYKSYSVWPVFEFLPSFPVSGPAFFLAQLDTM 181 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 ++L P++ ++ L L++R APQL++F++ PL VG++L+ + + Sbjct: 182 MRLTVLLGAPVVIVMFLTEFGLALISRFAPQLNVFILAMPLKSAVGLALLCVYAGFVIRY 241 Query: 240 CEHLFSEIFNLLADIISEL 258 L ++I LL + + L Sbjct: 242 FSELLADIDGLLQPLFNLL 260 >UniRef50_A4WT32 Flagellar biosynthetic protein fliR n=2 Tax=Rhodobacteraceae RepID=A4WT32_RHOS5 Length = 266 Score = 132 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 1/249 (0%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFS 67 L L F+ LR+ A + +P R VP V++ +++T + + S Sbjct: 12 LLGSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTLPVLGRADLPGPEALAS 71 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 A+ + +Q+I IG++ G + F+A AG+ I GL FA +DP++ PV+A+ Sbjct: 72 LSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVVAQ 131 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 I + +FL +GHL +L+ ++ +LP G A AG +FL GL + Sbjct: 132 IFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQIM 191 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P++ L+ +N+ +G++ R APQL++F GFP+T++ + L+ +P L ++ Sbjct: 192 MPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMSATLILLFLTVPGTMGAFSSLVADS 251 Query: 248 FNLLADIIS 256 LA ++ Sbjct: 252 LAALAQLLE 260 >UniRef50_C3XEY7 Flagellar biosynthetic protein fliR n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEY7_9HELI Length = 258 Score = 132 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 129/257 (50%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML + + + LLR +++ P + +P V+ LA ++ P + Sbjct: 1 MLDFLPYITNANVMAFLMLLLRFGGILAFFPFFDNQILPVSVRAALAFVLAVVFMPMVTH 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + +IL+G G +Q F+++ AG++ MGL+ A+ DP S Sbjct: 61 IISYPSLTAFMIGGLFEILLGFTCGLVLQIIFSSIVFAGDLASFSMGLTMASAYDPMSGT 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++++++ L++L+ L FN H L+ ++ T + P+GG L+ N TK+ + + Sbjct: 121 TKPIVSQVVVFLSILMALHFNFHYLLLDIIARTLNDTPLGGFMLSDNIVAYFTKSFANMI 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L G +A P+I +LL ++ G++ + PQ ++ VIGFP+ + V + ++A ++P I Sbjct: 181 LIGFSMAFPIIAVLLLTDIIFGMIMKTHPQFNLLVIGFPVKIGVALVILAIIVPSIMQHF 240 Query: 241 EHLFSEIFNLLADIISE 257 + SE +L I+S+ Sbjct: 241 RYDLSEGMKVLWKILSQ 257 >UniRef50_B6BI91 Flagellar biosynthetic protein fliR n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BI91_9PROT Length = 255 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 124/255 (48%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ +++ + R AL API S +++P +K +A T S+P Sbjct: 1 MVSWAEVFSDTYIVGFILLFFRFAALFMAAPIFSHKNIPMTIKTSMAFFFTIVFYSSMPP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + + + ++L G+A+G + A+ + AG I MG S A+ +DP + + Sbjct: 61 LQIDINVPTVVLAILSELLFGLAIGVVLLLAYNVITFAGGQISFMMGFSMASAIDPQTGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +MP++++ + ++ L++ L + H WL+ + + +P+GG L + F + KA S +F Sbjct: 121 SMPIISQFLSLMGLMILLAIDLHHWLLLFIDGSLSAIPLGGFLLTEDLFNYMIKATSNMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G M+A P+I L ++ G+L + PQ ++ VIGFP+ + V ++ A Sbjct: 181 IVGFMIAFPIIALSWLADVIFGMLMKTMPQFNLLVIGFPIKIMVAFMVLIATFSATMLIL 240 Query: 241 EHLFSEIFNLLADII 255 + E FN L Sbjct: 241 KSQMLEAFNYLEMFF 255 >UniRef50_A3ZNZ1 Probable flagellar biosynthetic protein fliR n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNZ1_9PLAN Length = 267 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 2/251 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 E L L ++ L RV +++TAP+ P +VK LA+ I+ I P Sbjct: 8 EPTLHQLFIFVTVLTRVSGMLATAPMFGSNYAPAKVKAFLAVTISMMITGLFWGEKFPQP 67 Query: 67 S--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 L + ++ IGI+ G ++ FA V+ G+++G GLS A +PA ++P+ Sbjct: 68 DHWMSYLVVLGGELFIGISFGLGVRILFAGVQITGQMLGQIGGLSVADAFNPAFDESVPM 127 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 LA + DM+ + +F GH ++I L+ TF +P G + L S+ F+ G+ Sbjct: 128 LAVLFDMVVVAMFFCLGGHRFMIGALLSTFADVPPGVGLASPEVVHVLVSTLSISFMLGV 187 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 A P LL L +GL++R PQL++ +GF L + + + + + + Sbjct: 188 QAAAPGTVALLIGVLVMGLISRTLPQLNLIAVGFSLNTMLLMIFVFLSVGSMGWLFQDQL 247 Query: 245 SEIFNLLADII 255 N + D++ Sbjct: 248 EPTVNSIRDLV 258 >UniRef50_D1B6A7 Flagellar biosynthetic protein fliR n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6A7_THEAS Length = 259 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 124/239 (51%), Gaps = 3/239 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 E + L ++ +RVL L+ ++P+ S P V++ LA+M++ + PS+ Sbjct: 2 NYEALVDVLAVHLLCSIRVLGLLMSSPVFMLPSWPIPVRMWLALMLSLLMVPSVDPQVPM 61 Query: 65 VFSFFALWLAV---QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V +A+ ++ L+G +G A++ +G + G QMGL+ AT DP N Sbjct: 62 VLLATWTGMAIFAVREFLVGAMVGLLSGLPLYALQLSGYLEGSQMGLAMATLFDPTQEGN 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 + +L ++ +L + L +NGHL LI + +F +P+G L+ + + +FL Sbjct: 122 VALLGQVKYLLGIWFLLHWNGHLVLIEAINRSFSLIPLGKGVLDLPPGQPFGRWITDLFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +LP++ LL ++ LG + R PQ+++F++G PL + +G+ L+ A++P + Sbjct: 182 LAIRFSLPIMGALLLADVGLGFVARTVPQINVFILGIPLKIGLGLILLMAVIPFVVDLF 240 >UniRef50_Q2W9Q3 Flagellar biosynthetic protein fliR n=3 Tax=Magnetospirillum RepID=Q2W9Q3_MAGSA Length = 254 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 2/244 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVP 64 + + +F R+ A + P L V R++L LA+ + F + P + A VP Sbjct: 4 DLLQLDIFRFFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPAVP 63 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 L + ++G+ LG + F + + AG +IG Q GL+ A DP + + Sbjct: 64 RSVGGMLLAVFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSFDPIAQQQSQL 123 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 L + + L+ + H + + ++++ P G + L + F G Sbjct: 124 LTGFLANIGLVAVFATDMHHLMFQAVFESYYLFPPGQPLQFGDYAETLGHLATDTFKVGT 183 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 A PL+ L LGLL+R+ PQL +F +G P+ + VG+ L MPL+ F Sbjct: 184 QFAAPLVVFGLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWLFMVTMPLVISLFLRFF 243 Query: 245 SEIF 248 Sbjct: 244 ESGL 247 >UniRef50_A8TPM4 Flagellar biosynthetic protein fliR n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPM4_9PROT Length = 255 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 2/244 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 E + R A++ P + E +P RV+L A+ + A+AP + Sbjct: 4 EEYLPLRIFQIMLVFARTSAVLLLLPGIGEVFIPVRVRLLFAVALALAVAPVIAPQLPPE 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + L L V ++LIG+ G + + + TAG +I GL+ AT +P+ Sbjct: 64 PTSAAGLLTLVVGEVLIGLYFGLVARILWLTLDTAGRVISFSTGLASATVFNPSLSEQGS 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 + ++ +L +++ + H +I +V+++ GGE + + A+T+ S F Sbjct: 124 AIGLVLTLLGIMMLFIADLHHMVIRAVVESYAVFRPGGELMIGDFSEAITELVSGSFKVA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + L+ P L + LG+L R+ PQL IF IG P + +G+ + ++ + Sbjct: 184 VQLSAPFFVFGLLFFVTLGVLARLMPQLQIFFIGLPAQIYLGLFVWVTILGALMSAFLTY 243 Query: 244 FSEI 247 +++ Sbjct: 244 YADT 247 >UniRef50_A8RW99 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW99_9CLOT Length = 259 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 111/254 (43%), Gaps = 4/254 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL---PAND 62 + +++ L R+ L+ P+ S R VP V+ GL + ++ IAP + Sbjct: 2 DSSVFEYFDIFLLVLARMGGLVFINPVFSRRGVPPMVRTGLVLALSLLIAPGVRSGAGQV 61 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + +F + ++++++G+ +G F + AG+ + GL+ +DPA + Sbjct: 62 MAFSTFDMVESLIREVILGLVIGCVFHIFFYMLYVAGDFLDTVFGLAMGKVMDPAGGVQT 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIFL 181 +L + +++ L F HL ++ L ++ +P+G G L + +FL Sbjct: 122 SILGQFVNVFFYLYFFATGCHLTMVRLFAYSYQVVPVGAGAILGGRILWYIITLFGSVFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + L LP + L + +G+L ++ PQ+ +FVI + +GI LM + F + Sbjct: 182 MVIKLVLPFVAAEFILEMTMGVLMKLIPQIHVFVINIQCKILLGIMLMMLFAYPMGAFMD 241 Query: 242 HLFSEIFNLLADII 255 + ++ Sbjct: 242 RYTEAMMTEAQKLL 255 >UniRef50_Q9KKH0 YsaT n=8 Tax=Enterobacteriaceae RepID=Q9KKH0_YEREN Length = 266 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 100/248 (40%), Gaps = 3/248 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSV-PKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 L R+ + P LS + + +K +A+ + + P ++ Sbjct: 20 LMTLALAWARIAPVFFFLPFLSSKLLNSGMIKNCVAVFLALGMWPFFSTYELNWEETSLG 79 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + + ++ IG+ L F + F GE+I Q G + + +DPA+ + ++ ++ Sbjct: 80 EMILYELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGVESSEMSVLVSH 139 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 + +++FLT G L +++ LP + ++ L + + + + ++LA P++ Sbjct: 140 IVVMIFLTQGGMYQLAQTFAESYRLLPFAAGFSHFDSLP-LGRWLNQLVVQAIVLAAPIL 198 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLL 251 L +ALGL +R PQL+ F + + + + P + L Sbjct: 199 VTLFITEVALGLYSRFCPQLNAFSLSLTIKSAIAFMVFLLYFQNEVPTILINMIS-LSPL 257 Query: 252 ADIISELP 259 DI P Sbjct: 258 HDIFGVAP 265 >UniRef50_B8HEJ0 Flagellar biosynthetic protein fliR n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ0_ARTCA Length = 252 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 121/244 (49%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 WL +R++A + AP + ++P RVK L + + A++ + VP+ + Sbjct: 8 PWLEAMLLASVRMIAFLVVAPPFAHHAIPARVKAMLGLGLGLAVSGRVADGYVPLGTAGF 67 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + V ++ G+ALGF + FAA+++AG +I L G A DP +N R++ Sbjct: 68 ITAIVLELATGLALGFLVYLVFAAIQSAGSLIDLSSGFQMAQAFDPQMMVNGAQFTRLLQ 127 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 M AL L +G+ +I L +F P+ G + A+ +A + +FL + +A PL Sbjct: 128 MAALALLFASDGYHLVIGGLTGSFAAFPLAGGIDLARPVEAMVQAVTGMFLCAVQIAGPL 187 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL 250 + +LL ++ LGLL R+AP L+ F +GFPL + + + L L + L + N Sbjct: 188 MVVLLLADVGLGLLTRVAPALNAFALGFPLKILLTLVLAGFLFLGLPRIVAVLAEQAANT 247 Query: 251 LADI 254 L + Sbjct: 248 LMGV 251 >UniRef50_Q1D9K4 FliR/MopE/SpaR family protein n=2 Tax=Cystobacterineae RepID=Q1D9K4_MYXXD Length = 272 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 112/260 (43%), Gaps = 6/260 (2%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--AND 62 T + + + RV+ ++ +P L VP +K+G+ + ++ + P + Sbjct: 12 TRANVSAVIFTVALVMCRVMPVLIFSPFLGGEVVPTELKMGIGLTLSIVLYPLIAGSVTS 71 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 +P+ + + L +++ +G + F + F A R AG ++ G + A P + Sbjct: 72 IPLSALPYIALMAKEVFVGFTIAFVVNTLFEAARVAGNLVDTMSGSNNAQLYVPQLGQQV 131 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 + + LA++LFLT NGH +I L D+ +P+ G P + +F + Sbjct: 132 TLFSSFKVQLAVVLFLTLNGHHLVIEALADSLVAVPLDGFPRFHDGPWPFFDLMIRVFAD 191 Query: 183 GLMLALPLITLL----LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 L ++L L ++ALG +NR+APQ+ +F I + V + L+ ++ + Sbjct: 192 LLRVSLALAAPAMLATFLTDVALGAINRVAPQIQVFFISMSVKPLVSVLLVFLVLGALMD 251 Query: 239 FCEHLFSEIFNLLADIISEL 258 + + L + L Sbjct: 252 RMQGEMVVMLRTLNQALRLL 271 >UniRef50_A1UTW5 Flagellar biosynthetic protein fliR n=34 Tax=Rhizobiales RepID=A1UTW5_BARBK Length = 265 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 103/251 (41%), Gaps = 4/251 (1%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 + S + L RV A + P +S +P +V+L +A+ + I P + Sbjct: 12 PLASVPLNQLVLLAMLVFARVGACLMLMPGVSSIRIPVQVRLFIAVSFSLIILPMVADFF 71 Query: 63 VP----VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + ++LIG+ G A++ II + MG S + Sbjct: 72 KDFGEKPDFALFVRALCSEMLIGVTFGVIAHVYLWALQFMATIIAMSMGYSGQPGHNVID 131 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL 178 +A ++ ++ ++LF + H++ I L+ ++ + P A + A S Sbjct: 132 STPETQIAHLLVLVGVMLFFASDLHMFAIRGLLASYDVVSPVFIPNPEAALIDYRDALSK 191 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 FL L +A P I + +N+A+GL+N++ P + ++ I P + G+ L+ +MP I Sbjct: 192 AFLTTLRIAAPFIVYAVLVNIAVGLVNKLTPNIPVYFISLPFVVAGGLFLLYFIMPEILN 251 Query: 239 FCEHLFSEIFN 249 F + Sbjct: 252 FFSLESQDWLR 262 >UniRef50_Q2RQH6 Flagellar biosynthetic protein fliR n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RQH6_RHORT Length = 253 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 2/248 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 L + +R+ + P LS V +++ LA+ IT P++ A Sbjct: 3 DAFLNQNLFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPA 62 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P + F + L + IG+ LG QF V AG I+G GL A DP + Sbjct: 63 PDNTAFLVLLIAVEATIGVFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSA 122 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 ++A + +A+++ H +I +V+++ P G P + L S F G Sbjct: 123 LIAGFLGEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQMPDTGDMVQLLVTILSSGFRLG 182 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 L LA P I + N LG++ R+ PQL++ + P + G++L+ +P + Sbjct: 183 LQLAAPFIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFLGH 242 Query: 244 FSEIFNLL 251 F L Sbjct: 243 FERGLINL 250 >UniRef50_Q2SC30 Type III secretory pathway, component EscT n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SC30_HAHCH Length = 262 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 104/247 (42%), Gaps = 5/247 (2%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKR-VKLGLAMMITFAIAPSLPANDVPVF--SFF 69 L L+ + + R+LA +S P LS+ ++ G+ + ++ + P + P F Sbjct: 10 LTLFMFTVPRLLAAMSVMPFLSKSFFGGTLIRNGVVLSLSLFLFPIVDEGYKPETMAPFM 69 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + +++++IG LG+ F A+ G I Q G + A+ ++P + + + Sbjct: 70 YALIILKEVIIGFCLGWLAALPFWALEAVGFFIDNQRGSTMASAMNPLTGSQASPVGILF 129 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGSLIFLNGLMLA 187 LF L L+ + ++H PI + +A ++ A Sbjct: 130 VQTFTTLFFLGGNFLTLMGAIYASYHAWPIFSFFPRIELSAAGFFFAQLDYFMSIVVLFA 189 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PLI + LGL++R APQL++F + P+ V + ++ + ++ + + Sbjct: 190 APLIACMFLAEFGLGLVSRFAPQLNVFFLSMPIKSLVCMVMLTFYVGVLMRIFDERYLRT 249 Query: 248 FNLLADI 254 F+L + Sbjct: 250 FDLFKQL 256 >UniRef50_A1TJC4 Type III secretion protein SpaR/YscT/HrcT n=5 Tax=Acidovorax RepID=A1TJC4_ACIAC Length = 284 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 96/235 (40%), Gaps = 3/235 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP-VFSFFAL 71 L L R A + P +++ + RV+ G +++ +A P+ + + Sbjct: 2 LGLLALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVAWGQPSGLLESTSPLVFI 61 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 L V++ LIG+ +GF + F A G +I Q G + +P S + ++ Sbjct: 62 ALVVKEALIGMLIGFAVSVVFWAAEGVGMLIDNQAGYNNIQQTNPLSGQQSTPVGNLLMQ 121 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAF--LALTKAGSLIFLNGLMLALP 189 LA++ F G + + LL D++ P+ G + + L +A P Sbjct: 122 LAIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKIAGP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ L+ ++L +GLL++ A +L + P+ + L+ L+ + Sbjct: 182 VLMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236 >UniRef50_C1TKH9 Flagellar biosynthesis pathway, component FliR n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKH9_9BACT Length = 260 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 3/257 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 + LY +R L +I TAP+ S P L+ P L Sbjct: 3 DLNALFRVVPLYMLVSIRFLGIIFTAPVFLASSFPIPCLYFLSFFFALITVPQLGGGLPE 62 Query: 65 VF---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V L A++++L+G ++ F F A++ AG +IG +MGL+ + +DP S Sbjct: 63 VLFSGVLPFLLAALRELLVGASIAFLASAPFYALQIAGRMIGTRMGLAMVSVLDPISQSQ 122 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++ ++ ++ L FL +NGH+ L+ L+++F LP+G L ++ L L + +F+ Sbjct: 123 DSIIGQLQILIGLWFFLYWNGHILLVRALMESFRLLPLGEMGLAVSSDLGLAEWLGKLFV 182 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 A+P LL ++ LG L R PQ+++F++G PL + +G+ L+ ++P+ Sbjct: 183 MAFKFAIPFYGALLLADIGLGFLARTVPQMNVFILGLPLKIGLGLFLLMVVLPMTVDIMH 242 Query: 242 HLFSEIFNLLADIISEL 258 ++ Sbjct: 243 DQIEPYLRAALGSLAVW 259 >UniRef50_A3NFU9 Flagellar biosynthesis pathway, component FliR n=10 Tax=pseudomallei group RepID=A3NFU9_BURP6 Length = 258 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + WL +WP R+LA +S AP + E +VP R+++ +A+ + P++ Sbjct: 1 MDAIVAAAAEWLARAWWPFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDPV 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 +PVFS A +QILIG+ G F A G ++ QMGL+ A DP + Sbjct: 61 AIPVFSARGALAAAEQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGAT 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 V++ M + ++LLF + HL ++ +L +F P+G P++ + L + +F Sbjct: 121 SDVVSGFMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGT-PIDLPSLKPLAYQAAWLFS 179 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 +LA PL+ + L + L+R P +++F +GF + G+ ++ A++ + Sbjct: 180 TTTLLAAPLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYA 239 Query: 242 HLFSEIFNLLADIISE 257 + + ++L + Sbjct: 240 SMTRHVLDVLEHHLGA 255 >UniRef50_A9HH75 Putative flagellar biosynthetic protein fliR n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HH75_GLUDA Length = 270 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 115/263 (43%), Gaps = 6/263 (2%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 ++ L RV AL+ AP L E + P RV+ G+A+ T AI P + Sbjct: 6 SFPGGSLPVLATMFLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRL 65 Query: 63 VPVFSFFA------LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 V V + + V ++L G+ +G+ + A+ A +++ + GL+ D Sbjct: 66 VEVSGTALRMPSVAIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDS 125 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 + ++ + ML ++FL+ + ++ + ++ P G P+ + ++T+A Sbjct: 126 ELGASSTAISHMASMLIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEAT 185 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 S F L LA P + + LG+LNR+ P + ++ I P L G+ L+A L+ ++ Sbjct: 186 SQTFALALQLAAPFVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVM 245 Query: 237 APFCEHLFSEIFNLLADIISELP 259 + +++ L P Sbjct: 246 TGVWQERVADLLVALPGTGGSPP 268 >UniRef50_B8EL38 Type III secretion system inner membrane R protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EL38_METSB Length = 249 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 4/240 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP----VFSF 68 + F R+ A + P +S +P RV+L + IT + P L P F Sbjct: 7 VLTAFVLFCRIGACLMIMPGISSARIPVRVRLFVGFAITLGLTPILSDEVGPKISAESPF 66 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + + + LIG +GF + F A+ I + +GLS + P + + Sbjct: 67 ILVQTILSESLIGGLIGFLGRIFFGALDALANAIAMAIGLSSPLAPPTDDNEPAPAIVSL 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + + AL+LF N H ++ L+ ++ P+ G + + + + F L ++ Sbjct: 127 ISLGALVLFFLTNLHWEVLRGLLASYSVWPVSGLFEARLGLVEIGNSLARSFALALRVSS 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P I L +NLA+G+ +R APQ+ I+ I P G+ L+ + FS Sbjct: 187 PFIVYALIVNLAIGIASRFAPQIPIYFITVPAVAAGGLFLLYITCRSLLELFVAGFSLWL 246 >UniRef50_C6N719 Putative flagellar biosynthesis pathway, component FliR n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N719_9GAMM Length = 249 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L WL F+ +R+ ++ PI + R +P +L L ++ +A +P + + Sbjct: 5 LPWLTSLFFITIRLGTVLLFTPIQAIRQLPIHARLILIFTLSMLLANYVPQKS-ELSNNA 63 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L+ + + G+ L ++ AFA + AG++I + G + +P+ H P+ + ++ Sbjct: 64 ILFGGLAEFANGLILATSLYAAFAIFQIAGQLIDSETGYNATAVFNPSEHSQEPLTSHLL 123 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 MLA+L F + +GH WL L +F +P G L + F + K S +F M+A P Sbjct: 124 SMLAVLFFFSLDGHQWLFKGLAYSFIIIPPGTLSLFAG-FTPVIKQFSFMFSMAFMIASP 182 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 +I LL L+L L+ R PQ+S + + P+ + G+ L+ ++ I P +FS+ F+ Sbjct: 183 IIIALLALDLCGALITRNMPQVSTYFLTLPIKILFGLFLLFMMLNYINPLTTTVFSQCFH 242 Query: 250 LLADIIS 256 +I+S Sbjct: 243 TWQEIMS 249 >UniRef50_A0NT10 Flagellar biosynthesis protein n=2 Tax=Labrenzia RepID=A0NT10_9RHOB Length = 258 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 4/250 (1%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITF----AIAPSLP 59 S S L F R+ A + P VP V+L +A+ + +AP + Sbjct: 7 FFSTFSSSLLLAVFLLFCRIGACLMVIPGFGSNRVPVHVRLFIALSVALALSPLLAPGVQ 66 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 A+ ++L G +GF + AA+ T ++ + +GLS + Sbjct: 67 ASLPDEQLGTVAGFIGAELLTGAFIGFLGRIFLAALETLTTLVSMAIGLSNMPGMPIDGV 126 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++P +A + + A + N H ++ L ++ +P+G + + Sbjct: 127 DSLPPVANLFTVTATAMVFITNQHWEILRGLAASYEAIPVGQPLAAVTGLEQFAEQLAKT 186 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 FL L + P I + +N A+GL+N++ PQ+ ++ I P + G+ + ++ Sbjct: 187 FLLALRVCSPFIVYTVVVNFAVGLVNKLTPQIPVYFISMPFVIAGGLYFLYLVIAEAIMI 246 Query: 240 CEHLFSEIFN 249 + Sbjct: 247 FLDGYFTWLQ 256 >UniRef50_Q1Q6S6 Flagellar biosynthetic protein fliR n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6S6_9BACT Length = 262 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 128/262 (48%), Gaps = 4/262 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML +++ L RV ++ AP+ S +P +++ +A+++ F + P+L Sbjct: 1 MLMENLFDFINDLPFLMLVFFRVGGILLFAPVFSNTHIPMLLRIAIALILAFILYPNLDK 60 Query: 61 N--DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP-- 116 N ++P + V++I IG +GF FAA AG ++ QMGL A DP Sbjct: 61 NLHELPSELIPFGLIVVKEIAIGAIVGFAASILFAAFSMAGYLLSNQMGLDMAVIADPSS 120 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 S P ++ +++A+LL L +GH + I+ + +FH +PIG + + Sbjct: 121 LSGDEEPTVSVFYNLIAILLLLAIDGHHYFINAIAQSFHAVPIGSFDYTTAILTKILSLF 180 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 +F+ G+ +++P +L+ +A+ L+ ++A +++IFVI +P+ + +G ++ PL+ Sbjct: 181 RTLFVIGIKISIPAFVVLMLSVVAMALMAKVAKEINIFVIAYPIKIIIGFIVVFVSFPLM 240 Query: 237 APFCEHLFSEIFNLLADIISEL 258 L ++S + Sbjct: 241 IGAMRMYIFGFEKGLMSLLSAM 262 >UniRef50_C7I0T6 Flagellar biosynthetic protein fliR n=1 Tax=Thiomonas intermedia K12 RepID=C7I0T6_THIIN Length = 266 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 101/260 (38%), Positives = 154/260 (59%), Gaps = 3/260 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ TS Q +W+ +FWP LRVLA++S AP+ S S+P V++GLA++I AIAP+LPA Sbjct: 1 MIHFTSTQIETWIGAFFWPFLRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPA 60 Query: 61 NDVPVFSFFALWLAVQQIL-IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 F W+ + Q L +G A+G +M +AV AG +IGLQMG+ FAT DP Sbjct: 61 MPPVQFGTATAWMLLLQQLLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGS 177 + + LA ++M+ +LLFL NGHL L++++ +F LP+ F + GS Sbjct: 121 VQVTSLASFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGS 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 IF GL LA P+I +LL NL LG+L ++APQL++F +GFP+ +G + +MP++ Sbjct: 181 AIFSLGLALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQ 240 Query: 238 PFCEHLFSEIFNLLADIISE 257 +HL +L ++ + Sbjct: 241 NVVQHLVDVGLSLSGQVLQQ 260 >UniRef50_Q0EZ56 Flagellar biosynthetic protein fliR n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ56_9PROT Length = 260 Score = 129 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 134/251 (53%), Gaps = 3/251 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFS 67 + + + +LRV ALI PIL + VP ++K GL +++T I P + +P+ Sbjct: 8 IEQIIIGLLVMLRVSALIMMLPILGHQLVPAQIKRGLIVLLTILIFPLVADKVAAIPLKP 67 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + +A+ +IL+ A+ Q FAA++ AG++I QMG+S A DP +H V+++ Sbjct: 68 VAFVIVAIHEILVAAAIALFAQLIFAAIQLAGQLISFQMGMSVANVFDPMTHSQQSVVSQ 127 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + LA+LL+++ H I+ L+++F PI A LT A + +F+ L +A Sbjct: 128 LAVTLAMLLWISVGAHHMFITALIESFTLFPIHQAIYFP-ALSTLTDAAATMFVLALKIA 186 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 PL+ L+ + +ALGLL+R PQ+ +F + FPLT+ +G+ A MP FS + Sbjct: 187 APLMVLMTLVYVALGLLSRAVPQIQVFFVSFPLTVGLGLLTFALGMPAFVYLVSDAFSTL 246 Query: 248 FNLLADIISEL 258 N + + + Sbjct: 247 PNQIPLFLRHM 257 >UniRef50_B6QWX6 Type III secretion apparatus protein SpaR/YscT/HrcT n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QWX6_9RHOB Length = 280 Score = 129 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 98/248 (39%), Gaps = 4/248 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDVPVFSFFA 70 + R+ A+ +T+ + + + + + + M+I + P + Sbjct: 15 FLVLLLTFPRIFAVFATSQLFNATLMSRMARNVVVMVIAIPLYPYNLQYVDGFSPTGSMF 74 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + ++ IG +G+T+ AV++AG +I Q G + A+ +DP + + Sbjct: 75 IVYFFKEYAIGFLIGYTISCLLWAVQSAGTLIDNQRGAAVASSIDPMLGNESSPIGDLFS 134 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSLIFLNGLMLAL 188 +L G ++++L+ +++ P+ L + ++A Sbjct: 135 RAFILYLFLTPGFFFILTLVYNSYMIFPVTEFVPVLPEEFPELILSIFDNAMRLMFIMAA 194 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 PL+ L+ AL +++R PQ+ +F++ P+ V + L+ + + P E+ Sbjct: 195 PLVILMFLSEFALAIISRFDPQIQVFILAMPIKSGVAVILLTFYLSFLLPEAAEHQIELK 254 Query: 249 NLLADIIS 256 ++ Sbjct: 255 LFTDEMFG 262 >UniRef50_C5CXN3 Type III secretion system inner membrane R protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CXN3_VARPS Length = 239 Score = 129 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 1/232 (0%) Query: 29 TAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF-ALWLAVQQILIGIALGFT 87 PI +P V++ L + ++ A+A L A + L+ A+ ++ +G LG Sbjct: 1 MTPIFYAVPLPASVRMLLVLGLSIALAFGLSAPVGAWMGWSELLFSALAELALGATLGLG 60 Query: 88 MQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLI 147 + AF A AG+++ +Q+G A +DP + +PVL + LA+L+F NGH L+ Sbjct: 61 ILLAFGAFSIAGQLLDVQLGFGIAQVIDPVTQRPIPVLTSAFNYLAVLVFFLLNGHHALL 120 Query: 148 SLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRM 207 + + P+G +A + K + +F G LA P++ +L + ALG++ R Sbjct: 121 RGISYSLERFPVGASWSIGHAVAPVLKQAAGLFSLGFALAAPVVFCILLVEFALGVVGRN 180 Query: 208 APQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELP 259 PQ+++F +G P+ + VG+ ++ I ++ I + I P Sbjct: 181 LPQMNMFTMGIPVKILVGLVALSFWFAGIGSVMTRAYASIASTWDGIFVAAP 232 >UniRef50_B0K9T0 Flagellar biosynthetic protein fliR n=11 Tax=Thermoanaerobacterales RepID=B0K9T0_THEP3 Length = 260 Score = 129 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 127/255 (49%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 + L + ++ +R+L + P ++VP K+GL + ++ D+ + Sbjct: 4 IQYLLQNVQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPVDLQI 63 Query: 66 FS-FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + + + ++G+ +G +F+A+ AG++I Q+G +D S +P+ Sbjct: 64 NNVLDYFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPL 123 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN-SNAFLALTKAGSLIFLNG 183 + + +L +L+F+ NGH L ++L + +PIG + S LTK S +F+ G Sbjct: 124 MGNFIYILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGMSQVLTKMVSDMFILG 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 ++ P+I L +L LG+++R PQL++F+IG P + VGI + ++P+ + + Sbjct: 184 FRISAPIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFM 243 Query: 244 FSEIFNLLADIISEL 258 F+ + + ++ + Sbjct: 244 FNGMNADIFRLMKFM 258 >UniRef50_Q3V7R2 Flagellar biosynthetic protein fliR n=1 Tax=Bdellovibrio bacteriovorus RepID=Q3V7R2_BDEBA Length = 259 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 134/255 (52%), Gaps = 2/255 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP- 64 S + + L+ LLR+LA + ++ + V VK+ L+++++ + P + +V Sbjct: 5 SAMTEAQILLFALVLLRMLAYVISSAVFGSPLVNTPVKILLSLVLSMVLYPVVKVGNVDY 64 Query: 65 -VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 V S + LAV+++++G+ALGF + F V G+++ + +GLS A +P Sbjct: 65 LVISNEIIGLAVRELIVGLALGFLTRLFFFVVSMTGDLVSMSVGLSAAQLYNPMMGSQGG 124 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 V+ + +A L+FL NGH LIS + ++ +P+ LN F + G + F+ Sbjct: 125 VIEQFYSAMATLVFLAINGHHMLISAIAQSYELVPVSSLALNFGPFAEIAVFGQVAFVMA 184 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + + P++ +L +NLA+G+L R PQ+++ V P+T+ +G++++ +PL+ + Sbjct: 185 IKMCAPVLVAILIVNLAMGILGRAVPQINVLVTSMPVTIMLGMAVVFICLPLLIMEMNGV 244 Query: 244 FSEIFNLLADIISEL 258 + L D++ L Sbjct: 245 VEITASKLFDVMKHL 259 >UniRef50_C9R9Y0 Type III secretion system inner membrane R protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9Y0_AMMDK Length = 255 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 2/241 (0%) Query: 19 PLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFSFFALWLAVQQ 77 R+L P L+ +P +LG+AM ++ + P LP + ++ + Sbjct: 15 VWARLLGFTLAFPPLALPGLPVLWRLGVAMSLSLFVTPLLPPDRPFSGGAWEWALTWAGE 74 Query: 78 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLF 137 +G+ +GF F A+R AG+++GLQMG A + + +LA +L +LF Sbjct: 75 FTLGLGMGFVAGLVFQALRVAGQLMGLQMGFGMAELLT-LGGVPETMLAEFFFLLGTVLF 133 Query: 138 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTL 197 T + + +LI LV ++ LP+GG + A K + L LA P++ + + + Sbjct: 134 FTTDAYQYLIEALVRSYEVLPLGGAAVKGGAIWLTVKLVGGMLATALQLAAPVLAVTVLI 193 Query: 198 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISE 257 + +LGLL RM PQ+++F++GFPL + + L+ L + L E+ + L + Sbjct: 194 DASLGLLVRMVPQINVFMLGFPLKIGASLLLLGLLATTLGTVIGRLLQEVAHNLLLLTRG 253 Query: 258 L 258 L Sbjct: 254 L 254 >UniRef50_Q28JK8 Flagellar biosynthetic protein FliR n=1 Tax=Jannaschia sp. CCS1 RepID=Q28JK8_JANSC Length = 256 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 2/237 (0%) Query: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 WL LRV A P L E+ +P RV+LG A+ T + P++ L Sbjct: 15 WLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVIPPL 74 Query: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 + + G+ +G +++ A++ AG I LS + A+ +P + I+ + Sbjct: 75 TAFFSEAIAGLIIGMALRYLVHALQVAGTIAAQSTSLS--QILGGATPDPLPAMGAILML 132 Query: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191 L L + H+ L+ + ++ LP G P + S F + LA P + Sbjct: 133 GGLTLAVISGLHVHLVQTFLHSYDVLPFGNLPGPRDLAGWSVDQVSASFSLAVSLAAPFL 192 Query: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 L N+ALG++N+ PQL + +G P G+ L+ P I P H F Sbjct: 193 VASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPVWLHAFEGAL 249 >UniRef50_Q2LT08 Flagellar biosynthetic protein fliR n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT08_SYNAS Length = 259 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 134/251 (53%), Gaps = 3/251 (1%) Query: 11 SWLNLYFWPLLRVLALISTAPILS-ERSVPKRVKLGLAMMITFAIAPSLPANDVPVF--S 67 + + LRV ++I PI ++++P +K GL+++ITF + P + + Sbjct: 9 EQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGFQLMEL 68 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + + + +ILIG+ +GF +F FA ++ AGE+IG QMG S +DP + + ++++ Sbjct: 69 TPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQVSLISQ 128 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + LA+L+FL N H +S + ++F + L L +F+ + ++ Sbjct: 129 LKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEVFIIAVKIS 188 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P++ +L+ ++ALG++ R PQ++IF++GFPL + +G+ + P+ +C LF+ + Sbjct: 189 APVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNYCIRLFNGL 248 Query: 248 FNLLADIISEL 258 + ++ + Sbjct: 249 AKQIHMLVLLM 259 >UniRef50_Q93RC3 EpaR protein n=25 Tax=Enterobacteriaceae RepID=Q93RC3_ECOLX Length = 261 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 8/262 (3%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRV------LALISTAPILSERSVPKRVKLGLAMMITFAI 54 M + Q S L R+ L P + ++P V+ + ++++ A+ Sbjct: 1 MGEAILYQLHSLLAATALGFCRLAPTFYLLPFFYLLPFFASGNIPTVVRHPIIIVVSCAL 60 Query: 55 APSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFV 114 + + A ++I+IG+ + + F G I Q G + ++ + Sbjct: 61 VQHYHYELLNLNEIDIALFAAREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTL 120 Query: 115 DPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTK 174 DPA+ ++ LAR+ ++ + ++LT G +++ L +++ G L Sbjct: 121 DPATGVDTSELARLFNLFSAAVYLTKGGMNFILETLWQSYNLWLSGNFNFPK--LEPLFS 178 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 + I + ++ A P+I ++L LGLL A QL+ F I + + ++ Sbjct: 179 YINNIMTHTIVYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFA 238 Query: 235 LIAPFCEHLFSEIFNLLADIIS 256 I S L I Sbjct: 239 PILAERVMPLSFFPEQLQLYIE 260 >UniRef50_A6LLB0 Flagellar biosynthetic protein fliR n=2 Tax=Thermosipho RepID=A6LLB0_THEM4 Length = 254 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 120/252 (47%), Gaps = 1/252 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 + + + + R+ + P+LS R +P VK+ L + +++ + P + + Sbjct: 4 FDFVETQFLNWGMLISRITGMFIITPLLSGRFIPTTVKVFLVLSLSYMMLPQTNSIPLNT 63 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 + ++G A+G A AGE++G++ G AT +DP P++ Sbjct: 64 PVIHIVLSLTNNFIVGFAMGLMAFMILGAFSIAGELLGVESGFGLATSMDPTM-EESPII 122 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + + +LA+ +F++ NGHL + ++D+ P+ + L+ N +T +F L Sbjct: 123 GQFVFLLAIFVFISLNGHLVVYEAILDSIKIFPLDLDFLDFNFTKFITTKFVEMFFIALK 182 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 + LP+I + +N+ LG+L+R+ PQ+++F++G PL + + ++PL A L Sbjct: 183 IGLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPLKSLLVFLIFLGMVPLWAETSAKLTI 242 Query: 246 EIFNLLADIISE 257 + L +S Sbjct: 243 LLEKTLEHFLSG 254 >UniRef50_C0A797 Type III secretion system inner membrane R protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A797_9BACT Length = 252 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 3/249 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + WL ++ LR L ++ P+ + +P +++ A M +A +P +P + Sbjct: 3 VEWLLVWTLTGLRALGVVMLLPVPGGKVLPAMLRVACAFMFPTLLAGIIPHAPMPEPPGW 62 Query: 70 --ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 AV+++++G+ALGF + FA AG +I ++GL A D + P+ A Sbjct: 63 PWLAEAAVREMVLGLALGFVGRLVFAGAELAGRLIANELGLVAAPGFDVPTPSQEPLPA- 121 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + A L+F GH ++ V +F P G + A LT + + G+ +A Sbjct: 122 FIGSFAGLMFFLMGGHEGALAAFVRSFDFAPAGAARFSVLAGETLTICTAQVIEFGMRMA 181 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P I L ++LA +L R P++++F+I +P+ VG+SL+A L + + Sbjct: 182 APFIALNFVISLAFSILGRAVPRMNVFIISYPVRTLVGLSLLAGAGGLFGRYLWRAMDAL 241 Query: 248 FNLLADIIS 256 + +++ Sbjct: 242 PWTMLELVG 250 >UniRef50_B9Z4S1 Flagellar biosynthetic protein fliR n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z4S1_9NEIS Length = 259 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 128/257 (49%), Gaps = 2/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + L +WP R LA ++ AP+ E P RV++G A+ + A P+L Sbjct: 1 MTGLFADLIQLLPALWWPFCRFLAALAVAPLSGEGMTPARVRIGAALALAVASLPALRGM 60 Query: 62 D-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + FS + + +AV+Q +IG+ G Q A + G ++ QMGLS A DP + Sbjct: 61 PAIDPFSLYGIAVAVEQAIIGLIFGLAFQLVMAVLSLLGFLVSSQMGLSMAVMNDPGNGN 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + V++ ++ +L ++F +GHL LI ++ +F P+G +++ + L + + Sbjct: 121 SSDVVSTLLYLLGAMVFFAVDGHLVLIQVVYTSFKAWPVGSG-IDALSLQTLANSVGWVL 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 ++LALP + + + GL+NR+AP L++F +GFP+ G+ + ++ + Sbjct: 180 AAAILLALPAVFATFVVQIGFGLINRVAPALNLFSLGFPVVTLFGLGTLGLIVRFVPEQY 239 Query: 241 EHLFSEIFNLLADIISE 257 L ++ +L ++ Sbjct: 240 LRLSGQLLQMLDGMLGH 256 >UniRef50_D1AZH9 Flagellar biosynthetic protein fliR n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZH9_SULD5 Length = 257 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 120/255 (47%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M + + L+F R+ + + P S ++P +K + + + P L Sbjct: 1 MESLVKLFGEHHVILFFLLFARLSGVFAFFPFFSHANIPLSIKTSITFFMVVFLFPLLSP 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V V ++LIG G + A + ++ AG I MG + A+ VDP + Sbjct: 61 LHVTPTLLNLTLAIVSELLIGFIAGLFLTIALSILQMAGMQISFVMGFTMASVVDPQTST 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++PVL++I ++ L++ L FNGH ++ +VD+ LP+G + + KA + +F Sbjct: 121 SIPVLSQIFSLIGLMIVLAFNGHHQMLLFIVDSLSLLPLGTFYPEMSVVGYILKATTGMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + G +L+ P++ L +++ G+L + PQ ++ V+GFP+ + V + ++ + Sbjct: 181 VYGFILSFPVLAFSLLMDVVFGMLMKTMPQFNLLVVGFPIRIAVSLVVIIVTLASTMLLF 240 Query: 241 EHLFSEIFNLLADII 255 + F E N L + Sbjct: 241 KREFMEAINQLTLLF 255 >UniRef50_Q84CR1 Putative type III secretion protein n=3 Tax=Bordetella RepID=Q84CR1_BORPE Length = 266 Score = 127 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 105/261 (40%), Gaps = 4/261 (1%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 + + +L R+L + P+ + + +P ++ + + + P L Sbjct: 4 EFNFVEAKVFLGTLAMTQPRILTAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQY 63 Query: 63 VPVFSFF--ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + + L L ++ ++G+ LG+ F G +I Q G S ++PA+ Sbjct: 64 AALDIDWPRLLALLAKEAMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGN 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSL 178 + + + ++ ++ FLT G ++L D+F I + + + + S Sbjct: 124 DSSPMGILFNLGFMVFFLTAGGFGLFATMLYDSFGLWNIWAWWPSMPAQGAVRMLDQFSG 183 Query: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 L+LA P I + L L L++R APQL +F + P+ + + ++ M + Sbjct: 184 FAARVLLLASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLFVLVLYMATLFQ 243 Query: 239 FCEHLFSEIFNLLADIISELP 259 + + + ++ + S P Sbjct: 244 YAGEILGSVGRIVPFLHSAWP 264 >UniRef50_A0P0L6 YscT; putative type III secretion protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P0L6_9RHOB Length = 282 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 106/257 (41%), Gaps = 4/257 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAP--SLPANDV 63 E + + L R+ A I+ + ILS VP+ + G +++ + P + + Sbjct: 8 FEIFEKHMLSLAMSLPRIYAFIAMSGILSTGVVPRLARNGAILILALPLVPVNMANISLI 67 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 ++ IG +G+ + + F +V +AG+ + Q G + A+ +DP Sbjct: 68 GDSLPALALYFAKEYAIGFLIGYMIGWIFWSVTSAGDFMDNQRGAAIASSIDPLQGQETT 127 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLIFL 181 L + L + G L +I +L +F P+ ++ + + + L Sbjct: 128 PLGNLFSQAFLTYMYSVGGILIIIGILYKSFMIWPVTRMLPIVSERFPVLILEILDLGMR 187 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 +LA P+I L+ LAL L++R APQ+ +F++ + + ++ + ++ P+ Sbjct: 188 TMFVLAAPVIALMFLSELALALVSRFAPQIQVFILSMGIKSGIATFVLVFYIKILFPYAT 247 Query: 242 HLFSEIFNLLADIISEL 258 + F + L Sbjct: 248 EGQALFFENTNRLYEIL 264 >UniRef50_A7HWA0 Flagellar biosynthetic protein fliR n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWA0_PARL1 Length = 253 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 2/250 (0%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-- 61 +T + + R+ A+I P L E S+P +V+L LA++++F + P + + Sbjct: 2 ITIDFLPQTAFTFMLVFSRLAAMIMLMPALGEASIPAQVRLMLALLLSFVMMPLVAGSYG 61 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 +P +++ +I +G+ +G + +A+ AG II QM LSFA VDP+ Sbjct: 62 AIPATVPGLVFIVCSEIAVGLFIGTAARLIMSALHVAGNIIAAQMSLSFAMNVDPSQGQQ 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 ++A + +L + L N LI+ + D++ G + K S F Sbjct: 122 GVLIANFLSLLGVTLIFATNLDHVLIAAMRDSYELFKPGEPIPVGDFLAMAVKMVSGSFR 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 GL LA P + L L +G+L+R+ PQ+ IF I P + +G L+ L+ + + Sbjct: 182 LGLQLAAPFLVFGLIFYLGIGILSRLMPQIQIFFIAMPANIALGFILLLLLLGALMTWFL 241 Query: 242 HLFSEIFNLL 251 F + ++ Sbjct: 242 QGFEQYISMF 251 >UniRef50_C5SN71 Flagellar biosynthetic protein fliR n=2 Tax=Caulobacteraceae RepID=C5SN71_9CAUL Length = 268 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 2/245 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSF 68 + +RV ++ P L +++VP R++L A + T + P + +P Sbjct: 22 QVVFTAMMIFVRVGSVAILIPGLGDQAVPPRMRLSFAFVFTLMLVPVVQSQMPALPPKLG 81 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L + + +IG+ LG M+ A+ AGE++ LQ LSFA +PA + Sbjct: 82 AMAGLIIHEAVIGLMLGMLMRTFLGALAIAGEVVSLQTTLSFAQTANPAQAQPSTSIGTF 141 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + ML L+L N H I+ + D++ P + +A + + F+ + + Sbjct: 142 LAMLGLVLIYATNLHHLFIAGMRDSYWVFPPMRPVMVGDATQLMIRTVGDTFMLAIQMTT 201 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ L +N+A G + R+ P IF P+++ +G+++ A + + E Sbjct: 202 PILVFGLIINVAAGFIGRIMPAFPIFFAVTPVSVLLGLAIFALSLGGTGLVFLQHYEEFL 261 Query: 249 NLLAD 253 L Sbjct: 262 RLFVR 266 >UniRef50_C1F995 Flagellar biosynthetic protein fliR n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F995_ACIC5 Length = 260 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 122/257 (47%), Gaps = 2/257 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 ML + W +L+ +LRV L+ AP+ S ++P +VK + +T +AP + Sbjct: 1 MLPLPPT-WPQYLSALVLVMLRVSGLMLFAPVFSSTAIPPQVKAVFTLAVTVCLAPVVAG 59 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + ++ +G+ G ++ + AG+++G+ S +DP + + Sbjct: 60 LPHADARL-GPQEILSELAVGLLFGICLRMLMEMLTFAGDLLGIAFSFSLVNLLDPNAPV 118 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +P++ + +L L+ L+ +I+ L+ TF +P+G L++ A+ + G+ +F Sbjct: 119 QVPLMGQFFSLLGTLVLLSTGLDRTMIAALMRTFAVVPVGSFVLSAKTAWAVAEMGTGLF 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 L L LA P++ + ++ A+GL R++PQL + P+ +G ++ + L F Sbjct: 179 LAALQLAAPVMVATMLVDFAVGLAARLSPQLPALSLTVPVKTMLGFVVLIGSLALWPEFI 238 Query: 241 EHLFSEIFNLLADIISE 257 E F + N A ++ Sbjct: 239 EARFDALLNTAAVLLHA 255 >UniRef50_A0L3J6 Flagellar biosynthetic protein fliR n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3J6_MAGSM Length = 266 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 4/262 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + + + R+ L AP S PKR+++ L + IT I P +P Sbjct: 6 MMDF-FGFTIGEVERMVLIMSRLSGLFLAAPFFSRNVGPKRIRVILLLWITIVIYPIVPP 64 Query: 61 NDVPVFS--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 ++ V + +GI +G + +V+ AG +IG +MGLS A +DP S Sbjct: 65 WPGEGNGEVIRMVFTGVVEFSMGIMIGMIAHWVLVSVQIAGTMIGFEMGLSMAMVMDPTS 124 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGS 177 + VLA ++ + L+LFL NGH WL+ L +F ++P+G P + + Sbjct: 125 GVQEGVLANLLYLFGLMLFLLLNGHHWLLEGLARSFVSMPLGSPLPHGEPMITIVLQGIV 184 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 +F L+LA P++ L L +GL+NR +PQ+ +F + P+ +G +M + + Sbjct: 185 HMFELALLLAAPVVAAAKLLYLGMGLINRASPQIQVFFLAMPVAQLMGFLIMGLTLSIFG 244 Query: 238 PFCEHLFSEIFNLLADIISELP 259 NL ++ P Sbjct: 245 QRLTREMELFINLAFRVVGLTP 266 >UniRef50_B8DQ95 Flagellar biosynthetic protein fliR n=7 Tax=Desulfovibrionaceae RepID=B8DQ95_DESVM Length = 264 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 127/254 (50%), Gaps = 2/254 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDV 63 ++ + + +RV ++ P + P +VK L ++ T A+ P + P + Sbjct: 4 FAFDVASMLSFLLTFMRVSLVLFLLPFFGGEAAPTQVKAALCLVFTLALWPHVSLPGGQM 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P F + L ++++G+ LG T+ F FA ++T G+++ QMG + T DP + N+ Sbjct: 64 PTHPFSLIVLLAGELIMGLMLGMTVHFLFAGIQTGGQVLATQMGFTMITLADPLTGANVS 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 + + + M+A+L FL +GHL+++ V TF +P GG L + +F+ Sbjct: 124 ITSHFLYMVAMLSFLVLDGHLYMLRAFVRTFELVPAGGLLLTPMLVKEVLALSGSMFVLA 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + +A P++ L + LAL L+ R APQ+++ +IGFPL + VG + L ++A Sbjct: 184 VKIAAPVLVSLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFIGMLFTIMADKIREF 243 Query: 244 FSEIFNLLADIISE 257 + ++ ++ Sbjct: 244 IVGMDPMMMHLLQA 257 >UniRef50_B0THC2 Flagellar biosynthetic protein fliR n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0THC2_HELMI Length = 266 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 144/264 (54%), Gaps = 7/264 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 ++ L+ L++ ++RV ++ AP+ + K+GL+ MI + S+P Sbjct: 1 MEAVINIMLNHLDVLLLMMIRVAGILVLAPVFNFPGFNNLAKIGLSFMIALILFLSMPDG 60 Query: 61 --NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 P F + + Q++L+G+A+GF +Q FAA+ TAG +I +Q+G +DP Sbjct: 61 ALPVPPQELFGYVIVVAQELLLGLAIGFILQLLFAAILTAGHLIDIQLGFGIVNIIDPLW 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLN----SNAFLALTK 174 +P+ + +LALL+F+ F+GHL LI +L D+F LP G P + + + + Sbjct: 121 GAQVPMTGVFLQILALLIFVIFDGHLLLIQVLADSFRILPAAGSPFSLALAGSISDFIVR 180 Query: 175 AGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMP 234 S + L G+ LA+P+I ++L ++ALGL++R PQ+++FVIG PL + VG++ + +P Sbjct: 181 LVSGVLLIGVQLAMPIIGIILINDIALGLVSRTVPQMNLFVIGIPLKIIVGVAFLWITLP 240 Query: 235 LIAPFCEHLFSEIFNLLADIISEL 258 LF+ F ++D + L Sbjct: 241 FYIDGLNRLFTLSFTQVSDFLRIL 264 >UniRef50_C3XLD0 Flagellar biosynthetic protein fliR n=2 Tax=Helicobacter RepID=C3XLD0_9HELI Length = 259 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 121/256 (47%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 +++ + + + LLR +I+ P + + ++K L ++T P L Sbjct: 1 MELLAYLTEGNVANFLLLLLRFAGIIAFFPFFENQLITAQLKGTLIFLLTIFFIPLLDVV 60 Query: 62 DVPVFS-FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ + + ++++G +Q F + GE+I MGL+ A DP + Sbjct: 61 PPSEWTILRFIVAGLSEVMLGFLASMALQIVFGMISFGGELISFAMGLTIANAYDPVTGA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 P++ +++ +LALL+ L + H + ++ +P+GG + N + K+ S IF Sbjct: 121 QKPIVGQLLTLLALLIMLGLDYHHLFFYFVSESVKEIPLGGFMYSQNYIEYIIKSFSHIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + GL ++ P+I L+L ++ G++ + PQ ++ IGFP+ + + +++ ++P I Sbjct: 181 VIGLTMSFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAIAFAVLIVIVPAIILHF 240 Query: 241 EHLFSEIFNLLADIIS 256 + F F+ L + Sbjct: 241 KREFLSAFDALTILFQ 256 >UniRef50_Q6MES5 Putative type III secretion inner membrane protein SctT n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MES5_PARUW Length = 280 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 8/244 (3%) Query: 22 RVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA--VQQIL 79 R+L +I+ AP R +P VK+ LA+ P L +F L + +++ Sbjct: 32 RMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNLLLVLYFFKELF 91 Query: 80 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLT 139 +G+ LG+ + F V+ G +I Q G S DP L + +++ + LF Sbjct: 92 VGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFFM 151 Query: 140 FNGHLWLISLLVDTFHTLPIGGEP------LNSNAFLALTKAGSLIFLNGLMLALPLITL 193 +G ++ ++ ++ LP +NSN + + K + + LA P + + Sbjct: 152 IDGPFMILDIISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALIM 211 Query: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 +L + LG+ NR+APQ+ I +G PL + ++++ L N L Sbjct: 212 ILMTDFFLGIANRLAPQVQITFLGMPLKSLLALAIVFFGWQLFLKQIVDESYVWVNYLYK 271 Query: 254 IISE 257 ++ + Sbjct: 272 LLDQ 275 >UniRef50_D2C589 Flagellar biosynthetic protein fliR n=6 Tax=Thermotogaceae RepID=D2C589_THENR Length = 256 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 110/256 (42%), Gaps = 2/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ + R AP SER+ P V++ L + ++ + ++ + Sbjct: 1 METIFSFLEEKFLAWMCIFTRFTGFFLIAPFFSERAFPVEVRVFLGLFTSWLMLFTVDVS 60 Query: 62 -DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + L+G +GF + A AG I G Q+G + Sbjct: 61 IPLNTPVLSFTLNLFFNFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVL-AFGEE 119 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ +AL +F+ G + + L D+ P+ + F + + S F Sbjct: 120 ETNPTGELVYFIALTVFVLIKGPVLVFEGLKDSIDVFPVNLTGVADGFFSYVVERSSDFF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L + P+I +L +++ LG+++R+ PQ+++F++G PL + +G+ L+ ++P+ A Sbjct: 180 VLILKIGAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWAEVA 239 Query: 241 EHLFSEIFNLLADIIS 256 + + + +N + +++ Sbjct: 240 QKISALSWNAIQELLG 255 >UniRef50_C7DF44 Flagellar biosynthetic protein FliR n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DF44_9RHOB Length = 260 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 2/241 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFF 69 WL LRV A+++ P L ERSVP RV+LGLA+ +T + P + P P Sbjct: 14 PWLFGAAVIFLRVGAMMAVLPGLGERSVPARVRLGLAIALTVLVTPLIAPDLPEPEEVSN 73 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 + L + + IG+ LG +++ + TAG I LS F A P + ++ Sbjct: 74 LVGLLLIEASIGLLLGMSLRLFVFTLSTAGAIAAQSTSLSQI-FGGSAGAEAQPAIGHVL 132 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 L + + HL ++ +V ++ + P G + + F LA P Sbjct: 133 VTGGLTIAMITELHLRVVEFIVMSYGSFPTGVPLSATFVADFGVSRVAASFAFAFTLAAP 192 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L N+ LG++NR PQL + +G P+ G+ L+A P + F + Sbjct: 193 FFIASLIYNVTLGVINRAMPQLMVSFVGAPVITAGGLVLLALSAPTLLGLWIDAFHDFMG 252 Query: 250 L 250 Sbjct: 253 A 253 >UniRef50_B7KZ93 Flagellar biosynthesis protein FliR n=7 Tax=Methylobacterium RepID=B7KZ93_METC4 Length = 256 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 4/241 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA----NDVPVFSF 68 F R+ + P S VP +V+L +A ++ A+ P L Sbjct: 14 FLGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTKLSGQAPT 73 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L + + G+ +G + + T + +G +P + + Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + A+ L + H L LVD++ +P G A + + + F L +A Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P I + +NLA G +N++ P + ++ + P + + L+ L + Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVMFGALLLLYTLSSEFMTQFLSGYVAWL 253 Query: 249 N 249 Sbjct: 254 R 254 >UniRef50_C6QF51 Type III secretion system inner membrane R protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QF51_9RHIZ Length = 254 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 3/251 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 SE L + RV A P S +P +++L +A+ I+ AI P + + PV Sbjct: 2 SELTQQTLLVPLIVFCRVGACFMVLPGFSSDRIPVQLRLFVAIAISLAIMPIVYDDVRPV 61 Query: 66 FSF---FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + + + V + L G+ LGF ++ F A+ A + G A + Sbjct: 62 AAGPAEGLVSIIVTESLAGLFLGFIVRIFFLALEFAAIAMANLAGYGSAFSHAIEGNDPS 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLN 182 + + + A+++F + H+ +I +L +++ L +G E + F Sbjct: 122 TPYSVFVTLPAVVMFFVADLHIAIIRMLHNSYAALKVGSEFAAPPNLSMIVSTFGSAFKL 181 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 L L+ L+ + +NLA G LN+M PQ+ + + P + G+ ++ + I Sbjct: 182 TLQLSAALVVYSVMVNLAFGFLNKMIPQIPSYFVSTPFVVLGGLIILLQIDSGIISIFSS 241 Query: 243 LFSEIFNLLAD 253 L + L Sbjct: 242 LVMQAIATLGQ 252 >UniRef50_D2LCZ4 Flagellar biosynthesis protein FliR n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCZ4_RHOVA Length = 255 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 100/255 (39%), Gaps = 4/255 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + + F L R+ + P + VP RV+L + + I+ A+A +L Sbjct: 1 MISQALDALPGGVLSIFLVLCRIGGCLMVLPAIGGARVPVRVRLMVCLAISVAVAFALGN 60 Query: 61 NDVPVFSFF----ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 + S + L + + G+ +G ++ FA+ + +GL+ Sbjct: 61 FESARESLSSTPSLVSLVLVETAKGLVIGIMIRLFFASFKFLAVAGSAALGLAMPVNAVE 120 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 P LA + + A LFL + HL ++ L+ ++ LPIG + + + Sbjct: 121 EDGETTPPLAEFVSLTAAFLFLATDQHLEVLKALLQSYTVLPIGTGIGLAPSLSGVVDTL 180 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 L L + PL+ +NL G+LNR+APQ + + P + G+ + + Sbjct: 181 RDACLVSLQVVAPLLVFAFLVNLLFGVLNRIAPQTPAYFLSMPFVIGGGMLIFYFTAGEM 240 Query: 237 APFCEHLFSEIFNLL 251 F+ + Sbjct: 241 FLLFMGAFASWLQEI 255 >UniRef50_A6DDV7 Flagellar biosynthetic protein fliR n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDV7_9PROT Length = 254 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 107/243 (44%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 + + +R+ + +S P + ++P VK L++ ++ P +P + + L Sbjct: 11 VVTFLLLFIRISSFLSFLPFFNYMNIPMNVKAALSIWLSILFFPIVPKVNFEINLINILL 70 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 +I +G +Q F ++ A E I MG + A +DP +L++ + Sbjct: 71 AIFNEIAFAFFVGMALQLIFDILKFAAEQISFVMGFTMANVIDPNFGGQSTILSQFFIWI 130 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 A+L+FLTF G I LL LP G + F+ G+ LA P+I Sbjct: 131 AILVFLTFGGDHLEILLLSKFMSNLPFGAFFNYHKIYEYFLVYMGKYFMIGVGLAFPIIA 190 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLA 252 + L ++ G++ + PQ ++ V+GFP+ + V ++ A++ + E+F ++ Sbjct: 191 ISLMSDIIFGMIMKTMPQFNLLVVGFPIKIFVSFIVLMAILSSMMLVFSREIKEVFKIVL 250 Query: 253 DII 255 I Sbjct: 251 GFI 253 >UniRef50_P40701 Surface presentation of antigens protein spaR n=32 Tax=Proteobacteria RepID=SPAR_SALTY Length = 263 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 104/238 (43%), Gaps = 2/238 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M + + RV + P L+ + + + +++ + P Sbjct: 1 MFYALYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALN 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P S + L +Q+ +G+ LG + + F + G II Q G + ++ +DPA+ + Sbjct: 61 EAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGI 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + +A ++M A +++L G + ++ +L ++ E + + L + + Sbjct: 121 DTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNE--CTPSLPPLLTFINQVA 178 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 N L+LA P++ +LL + LGLL+R APQ++ F I + + + +M + P Sbjct: 179 QNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >UniRef50_D2R542 Type III secretion system inner membrane R protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R542_9PLAN Length = 277 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 111/256 (43%), Gaps = 2/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 + L + ++ L R+ L+ P+ SVP + + LA+ I + P Sbjct: 1 MSPLITSQLDQIVIFSLVLTRIGMLVFILPMFGSSSVPMQARAILAIAIALILTPVYAGA 60 Query: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 P + ++ ++G+ALG + A ++ AG II G++ A +P Sbjct: 61 LPSPPENLMMLGLMLARESMLGLALGLAVMILLAGMQLAGSIISQMSGMTLADVANPTFD 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 ++P+ +++++ML+L +F + GH ++S L+DTF +P G A L + Sbjct: 121 TSVPIFSQLLEMLSLAIFFSLGGHRLVMSALLDTFKFMPPGQATFPEEAVEMLATIFTHS 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F G+ A P I LL L + L++R PQL+ +G + ++++A + A Sbjct: 181 FEIGIRAAAPAIISLLLAILVVALISRTLPQLNSVAVGLNFNAMIVLAILALSLGSAAMV 240 Query: 240 CEHLFSEIFNLLADII 255 + + I Sbjct: 241 FQEELEPTIVSITQSI 256 >UniRef50_Q8D3F3 Flagellar biosynthetic protein fliR n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3F3_WIGBR Length = 258 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 155/256 (60%), Gaps = 1/256 (0%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+ + L W+N W + RV L +AP+ +E+ +P+++K+ ++++ +F ++ LP Sbjct: 3 MIDFSINILLDWINQNIWAIARVNGLFISAPVFNEKVIPRKIKILISVLFSFLVSQELPL 62 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 N++ + S ++ + QI+IG +G +Q +F +++ +GE+IGLQMGLSFA F D S Sbjct: 63 NNISIISIEGFYVLIIQIIIGFFIGLILQLSFCSIKFSGELIGLQMGLSFAVFFDHISGP 122 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLI 179 N P+++R +++ +L+FL+F+ HL ++ +L ++F +PIG N F ++ +I Sbjct: 123 NSPIISRFFNLILILIFLSFDAHLTVLDILFNSFKLIPIGINFKFNDEIFFSIINFSGII 182 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F NGL L++P IT+LL+LN+ G+LNR PQ SIFVIGF LTL +G+ + ++ Sbjct: 183 FANGLFLSIPSITMLLSLNILFGILNRFTPQFSIFVIGFSLTLLIGLLSIYIILNNFQKL 242 Query: 240 CEHLFSEIFNLLADII 255 L F + + Sbjct: 243 STDLIFNTFKYIYNFF 258 >UniRef50_A0RQU4 Flagellar biosynthetic protein fliR n=23 Tax=Campylobacter RepID=A0RQU4_CAMFF Length = 257 Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 125/256 (48%), Gaps = 2/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--P 59 ++ + + + +F L+R AL+ P + +P +K L+ M + P P Sbjct: 1 MEFVNYLGQNNVVTFFLLLVRTGALMVFFPFFNHMQIPVIIKAVLSFMFAIFLFPLAHAP 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + + + +++ G+ G + F A++ AG I + MG S A+ +DP S Sbjct: 61 VGLENLSVEYLILETFSELMFGMCAGVLLMLVFGALQLAGGQISMIMGFSMASVIDPQSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +NMP+++ +++ + LL FL F+GH ++ + + +P+GG + N K + Sbjct: 121 VNMPLISNMLNFIVLLAFLLFDGHHIVLQFIAYSLQFIPLGGFYPDENIVKYTAKGVINL 180 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 FL G +++ P++ L L +L G+L + PQ ++ V+GFP+ + + ++ A++ + Sbjct: 181 FLFGFIISFPILALSLLADLIFGMLMKTMPQFNLLVVGFPIKIAIAFVVIMAIISAMVKL 240 Query: 240 CEHLFSEIFNLLADII 255 L ++ N L + Sbjct: 241 FTSLMMQVLNDLPGLF 256 >UniRef50_P55722 Probable translocation protein y4yN n=6 Tax=Rhizobiales RepID=Y4YN_RHISN Length = 272 Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 97/241 (40%), Gaps = 7/241 (2%) Query: 26 LISTAPILSERSVPKRVKLGLAMMITFAIAPSL----PANDVPVFSFFALWLAVQQILIG 81 ++ P+ + + ++ LA+ + A D L ++++ +G Sbjct: 32 IMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQIPLLGLKEVFVG 91 Query: 82 IALGFTMQFAFAAVRTAGEIIGLQMGLSF-ATFVDPASHLNMPVLARIMDMLALLLFLTF 140 + LG + ++ AGE I Q G++ +T DPA++ + + + A+ +F+ Sbjct: 92 VLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATNSQASAMGVFLGITAITIFVAA 151 Query: 141 NGHLWLISLLVDTFHTLPI--GGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 G ++S L ++ P+ L++ + L I L+++ P++ L ++ Sbjct: 152 GGVEAVLSALYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLID 211 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 +++ +L R APQ + P+ V +M + + ++ L + L Sbjct: 212 ISMMMLRRFAPQFKSGQLSPPIKNIVFPIIMVTYATYLLEGIKLEITQADGTLGWLDKLL 271 Query: 259 P 259 Sbjct: 272 K 272 >UniRef50_C4XT80 Flagellar biosynthetic protein fliR n=2 Tax=Desulfovibrio RepID=C4XT80_DESMR Length = 259 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 2/249 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP--ANDVPVFSF 68 + + + +R+ ++ P +P VK ++++ A+ P L +P + Sbjct: 9 AMVFSFLLTFMRLSVVVFMLPFYGATLIPNVVKASFCLVLSMALWPRLAFAGTALPASPW 68 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 + + ++LIG+ L ++ F+A + AG I+G MG S VDP + + L + Sbjct: 69 TIGLMFLGEVLIGLMLDILVRLLFSAAQAAGAIMGFSMGFSLMNSVDPMTGASESGLGHL 128 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 M +A +LFL NGHL+L+S L +F +P GG +N+ L +F+ + +A Sbjct: 129 MSQVATMLFLCLNGHLFLLSALAQSFEMVPPGGLLINAAVGEHLIVFTGQLFVMAIKIAA 188 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P++ + ++LAL L+ R APQ+++ IGFPL ++VG M + + E+ ++ Sbjct: 189 PILASIFLVDLALALVARAAPQMNVLFIGFPLKVSVGFLFMTMVFAAMTVVIENFLLDLE 248 Query: 249 NLLADIISE 257 + ++ Sbjct: 249 PMFRLVLKA 257 >UniRef50_Q1NP89 Type III secretion system inner membrane R protein n=2 Tax=Deltaproteobacteria RepID=Q1NP89_9DELT Length = 263 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 3/252 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFS 67 L ++RV L+ P++ +VP +VK+ L +M + +AP +P + +P + Sbjct: 11 TDQLMRVVMIMVRVGPLLFLMPVIGAPNVPTQVKILLVLMTSLVLAPMVPVSAADLPDTA 70 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 + +I+ L ++F FAAV TAG+++G+QMG+ A +DP + + Sbjct: 71 LGFAHFVILEIVFVAILALFVRFVFAAVETAGQVVGVQMGMGMAGVMDPVFGNQISPVGM 130 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG-EPLNSNAFLALTKAGSLIFLNGLML 186 + ++ A+LLFL +GH + +V + + G ++ + + + S +F+ +M+ Sbjct: 131 LWNIAAILLFLAIDGHHLFFAAMVQGYQWVGPGQLAAVSQLTYEGMMEGASQMFVLAIMI 190 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 P+ L ++ +G++ + PQ+ I ++G P+ + +GI M +AP F Sbjct: 191 MAPVSVALFFSHVGMGVIAKTVPQIPILIVGMPMNIAIGIVFAGLAMGYLAPLLIARFEM 250 Query: 247 IFNLLADIISEL 258 + LL I + L Sbjct: 251 LQRLLPGIGAGL 262 >UniRef50_A4A5Y4 Flagellar biosynthetic protein fliR n=3 Tax=unclassified Gammaproteobacteria RepID=A4A5Y4_9GAMM Length = 259 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++ T E+ L+ Y WP LRV A+ API S S+ RV++ LA+++ +AP LP Sbjct: 4 MEFTPEELTLLLHTYLWPFLRVSAMFLAAPIFSYSSISVRVRVLLAVLVAALVAPLLPTT 63 Query: 62 DV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V S L LA++++ IG+ +GF MQ FAAV AG + + MGL FA VDP + + Sbjct: 64 PVVEPLSAVGLVLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMSVDPQNGV 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 +PV++++ +LA LLFL +GHL LIS +VD+F +P+G F + G+ +F Sbjct: 124 QVPVVSQLNVVLATLLFLAIDGHLILISAVVDSFGLVPVGSAISPEGMFSNVASLGTQLF 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L+LALP +T +L +N+A G++ R APQL+IF +GFP+T+ G M +P+ Sbjct: 184 ASALLLALPTLTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPMFISTL 243 Query: 241 EHLFSEIFNLLADIIS 256 + S ++ Sbjct: 244 QRFLSLGLEQTLLVLG 259 >UniRef50_Q89AZ0 Flagellar biosynthetic protein fliR n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIR_BUCBP Length = 257 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 160/255 (62%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M Q ++ ++ F+P +R+LAL STAP+ + + + K++KL +A +I++ + LP Sbjct: 1 MFQFNFNDFILFIYNLFFPAVRILALFSTAPLFNSKFIEKKIKLIMAFVISWIFSSFLPK 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 ++ +FS + + ++Q+LIGI LG TMQ F+++ +GEII LQMGLSF++ D S Sbjct: 61 VNIAIFSVDGILIIIEQMLIGILLGLTMQLIFSSIFMSGEIISLQMGLSFSSLFDFNSRS 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 N+ L+ + + LLLFL +NGH+W++S L DTF T+PI L+ N FL + IF Sbjct: 121 NLSALSHFVHIFLLLLFLEWNGHIWMLSALFDTFITIPIQKIYLDPNIFLKVVNFSKYIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +ML P+I + L LNL++G+LNR+APQ+SI +GF +TL VGI L+ +P+ C Sbjct: 181 FDSIMLLFPIIIVQLLLNLSIGILNRVAPQISILSLGFTVTLLVGIILLYFFIPIFPSSC 240 Query: 241 EHLFSEIFNLLADII 255 +F + + + + Sbjct: 241 IVIFRRLQSFVLTLF 255 >UniRef50_A6CEQ7 Flagellar biosynthetic protein fliR/B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEQ7_9PLAN Length = 329 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 119/312 (38%), Gaps = 60/312 (19%) Query: 2 LQVTSEQWLSW----LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPS 57 LQ+ Q L W + L+R+ L+ P+ + P +++ L + ++ I P+ Sbjct: 14 LQLAPGQLLQWAMLQFYAFTLVLVRISGLMIIGPVFGQPIFPTNIRILLILSLSLLITPT 73 Query: 58 LPAND-----------------------------------------------------VP 64 L +P Sbjct: 74 LHDQTTVGFYQLDSNQDQRLSQDEVPEHLQDRFEDLVVTAGRQATRELTVNDYRFVTRMP 133 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 W + ++ +G +LG + +++ AG++I Q G++ +P +N + Sbjct: 134 NSLLDYAWSILGELTLGFSLGLGIYIILLSLQMAGQMIDQQAGMALGEVFNPGFDMNASL 193 Query: 125 LARIMDMLALLLFLTF---NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 + + + + +FL NGHL ++S L+DTF P+G +++N L + Sbjct: 194 SGQYLYFIGISVFLLMEPVNGHLLMLSSLIDTFQVFPVGEGIVSTNTLDLLQTLMHQSLV 253 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + +A PL+ + +++++G L PQ+++ VIGFP+ + + ++ + A Sbjct: 254 LSIKVAAPLLAISALISISMGYLGHTVPQINVLVIGFPIRAMISLIVLVFTLSGAADIVV 313 Query: 242 HLFSEIFNLLAD 253 + L+ Sbjct: 314 ESIPSAIDQLSR 325 >UniRef50_Q2T714 Type III secretion system protein BsaY n=30 Tax=Burkholderia RepID=Q2T714_BURTA Length = 251 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 97/239 (40%), Gaps = 5/239 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSV-PKRVKLGLAMMITFAIAPSLPA 60 + V+ E + R+ + P L++R++ VK + + + PS Sbjct: 1 MDVSMEAFYRQAGAIAIAYARIAPVFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSFAH 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P+ +A+ + G+ LG + F GE+I Q G + + +DPA+ + Sbjct: 61 P--PLRGGALAGIALTEAAAGLVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGV 118 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 LA + + FL G L ++ L ++ T+P G S + + + Sbjct: 119 EASALAPFVSLFYAAAFLQQGGMLTIVGALESSYATVPAGAPF--SADLPRVGALLTDLV 176 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +GL LA P++ ++ + LGL +R PQ++ F + + V ++ AP Sbjct: 177 AHGLALAAPVLIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 235 >UniRef50_B6AV41 Flagellar biosynthetic protein FliR n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AV41_9RHOB Length = 253 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 3/251 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-P 59 M + E W + + L RV AL+S P L E S+P RVKL +++ ++ + P + Sbjct: 1 MSSLVPEFWTPYALSFILVLFRVAALVSLLPALGEASIPARVKLVMSVCMSLIVFPIVHD 60 Query: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 + + L A+ ++ IG+ GF ++ ++ AG I LS + A Sbjct: 61 VSQNSLAGANWLSAAIAEVGIGLWFGFMLRVFVFCLQIAGSIAAQSTSLS--QILGSAGA 118 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 +P L ++ + L L+ H+ + L+ ++ LP G P S A + Sbjct: 119 EPLPALGHVITTAGMTLALSLGLHVSAVQYLIGSYTILPTGQLPDISTISEAGVAQIAWG 178 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F LA P L L NL LG++NR PQL + +G P+ + L+A +P+I Sbjct: 179 FQLAFSLAAPFFILSLLYNLTLGVINRAMPQLMVAFVGAPVITAGALVLLAISIPVILKT 238 Query: 240 CEHLFSEIFNL 250 + N Sbjct: 239 WAGALFGLLNS 249 >UniRef50_Q11LQ0 Flagellar biosynthetic protein fliR n=3 Tax=Phyllobacteriaceae RepID=Q11LQ0_MESSB Length = 248 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 4/239 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP---VFSFF 69 + F RV A P L VP +V+L +A+ + A+ L P Sbjct: 6 ILAAFLAFCRVGACFMLMPGLGSARVPMQVRLFVAVGASLALLAHLWDVIAPHASDRPDI 65 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATF-VDPASHLNMPVLARI 128 L L +ILIG +G + A++ G I L G A V + P +A + Sbjct: 66 LLLLIGSEILIGSLIGLVARLYVLALQFIGSAIALMTGFGMAAGGVAIEENEPQPAVAAL 125 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + AL+L N H +I LV ++ PI A + S F + L Sbjct: 126 ISFSALMLLFVLNFHHAIIEALVASYRLAPIEALFDPRAALTDIADTLSEAFFVMIRLGS 185 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 P + + +NLA G +N++ PQ+ I+ I P + G+ L+ + F Sbjct: 186 PFVAYAILINLAFGFINKLTPQIPIYFISLPFVIAGGLLLLYFGIGTFLSLFADGFFPT 244 >UniRef50_B6IS88 Flagellar biosynthetic protein fliR n=1 Tax=Rhodospirillum centenum SW RepID=B6IS88_RHOCS Length = 254 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 109/250 (43%), Gaps = 2/250 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDV 63 + + + +R+ A P + E+++ R++L A+++ + P + Sbjct: 4 AAFVGGSVFAFLLVFVRLAAAFMIIPAIGEQAISARIRLLFALVVAAVVTPVVRQYLPPE 63 Query: 64 PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 P L V +IL+G+ +G + A+ T G +I Q+GL+ A +PA Sbjct: 64 PSAPAELAALVVSEILVGLFIGTLARVLLTALETGGFLIANQLGLAAAQAFNPALAAPGN 123 Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNG 183 + ++ + A+++ + H LI +VD++ +A L + + F G Sbjct: 124 PIGALLGIGAVVVIFATDLHHMLILAVVDSYTLFSPADGLPLGDATEHLAQTVNTSFAIG 183 Query: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 + LA+P + L LGL+ R+ PQ+ +F +G P+ + +G +++ + + F Sbjct: 184 VQLAVPFFVIGFLFYLGLGLVARLVPQVQVFFVGLPIQIAIGSLMLSLSLSALMLFWLTH 243 Query: 244 FSEIFNLLAD 253 F + L Sbjct: 244 FEDQLVGLLR 253 >UniRef50_B6IQA3 Flagellar biosynthesis protein FliR n=1 Tax=Rhodospirillum centenum SW RepID=B6IQA3_RHOCS Length = 251 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 2/247 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VP 64 + L+RV A +S P E +VP R ++ A+ + A+A ++P P Sbjct: 5 ATLSGEIYGVLLVLVRVGAALSMLPGFGEMAVPMRTRMAAALALALALAAAVPGLPAVPP 64 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 L V + + G +G + FAA++ AG+II LS + V Sbjct: 65 AGPGELLRHIVGEAMAGAVIGIGARILFAALQIAGQIIAQSASLSNIFALPGTGFEGGSV 124 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 L + M L+L + H +I L+D++ +P P + + +L F + Sbjct: 125 LGAYLMMGGLVLVFVTDLHHAMIRALLDSYQLMPAATIPDPRSLGKLTAETVNLSFRLAV 184 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 + P + L L N+ LGL+NR P ++F +G P+++ G ++A + I F Sbjct: 185 QFSAPFLLLGLAYNVGLGLVNRAMPHFAVFFVGLPVSILGGFIVLALVAAAILGGFLDAF 244 Query: 245 SEIFNLL 251 Sbjct: 245 GGWLGRF 251 >UniRef50_UPI00019F17CD type III secretion system EscT protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F17CD Length = 264 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 107/259 (41%), Gaps = 6/259 (2%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSV-PKRVKLGLAMMITFAIAPSLPA 60 + + L F +LR L + P+L+ +++ ++ + ++IT P L Sbjct: 1 MGDFFPALTGIIPLLFIAVLRPLGIFIIMPLLTSKNLAGTMIRNSIIILITIPALPGLKE 60 Query: 61 ----NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 + V F+ +++ IG+ +GF F A+ +AG ++ G S +P Sbjct: 61 NVFLSQPHVIDFYFFLALSREVFIGVLIGFVAAIPFWAIDSAGFLLDTMRGSSMGNIYNP 120 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP-LNSNAFLALTKA 175 + +L L ++F G LI+ L ++ P G N + + + Sbjct: 121 TLAESSTLLGVFFSQLFTVIFFVCGGMNQLITTLYQSYVLFPPGESISFNRHLLDFVVQQ 180 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 +++F+ L ++P ++L ++ +GLLNR A QL++F + + + + ++ + Sbjct: 181 WNMLFVLFLHFSIPAAAVMLLTDVGMGLLNRSAQQLNVFFLAMSVKSILALIVLMITIAF 240 Query: 236 IAPFCEHLFSEIFNLLADI 254 + ++ + Sbjct: 241 SLDYVRETLLRNLYSISTL 259 >UniRef50_C8BNU9 HrcT n=1 Tax=Pseudomonas syringae pv. syringae RepID=C8BNU9_PSESY Length = 268 Score = 122 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 102/261 (39%), Gaps = 4/261 (1%) Query: 4 VTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV 63 ++ N + R+ + P + + + + + AP + Sbjct: 2 FDAQFAYELFNGIALSMARLYPCMFLVPAFLFKHLKGLPRYAVLAALALIPAPGIGQELS 61 Query: 64 PVFS--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + +L +++++G +G + F G ++ Q G ++PA + Sbjct: 62 RLGESWTGIFFLIFKEMVLGTLMGLVLYLPFFLFSAVGVLLDNQRGALTGGQLNPALGAD 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLI 179 + L+++ + ++L + G L+ ++ D++ P L + F + Sbjct: 122 VTPLSQLFEETLVMLLIIIGGLPLLMQVIWDSYQIWPATSWWPALQAQGFEVYLGLVNDT 181 Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 F + L+ + P I LLL + A+ L+ +PQL++F++ P +G++ + +P + Sbjct: 182 FTHLLLYSAPFIALLLLVEAAMALIGIYSPQLNVFILAMPAKCVIGLAFLVIYLPTLLDL 241 Query: 240 CEHLFSEIFNLLADIISELPL 260 + ++ ++ +P Sbjct: 242 GTERLELLRDVRHTLLLIVPA 262 >UniRef50_P96068 Secretion system apparatus protein ssaT n=29 Tax=Enterobacteriaceae RepID=SSAT_SALTY Length = 259 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 5/255 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVP 64 ++Q WL +R L+L P+L S+ ++ G+ M +TF I P + + Sbjct: 2 AQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIM 61 Query: 65 VF---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + + L L +++IG ++GF F AV AG ++ G + T + Sbjct: 62 MHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEAE 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKAGSLIF 180 + + ++F G +++++L +++ LP G + + ++ Sbjct: 122 TSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTLY 181 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +LP I ++ +LALGLLNR A QL++F PL + + + P Sbjct: 182 QLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHY 241 Query: 241 EHLFSEIFNLLADII 255 + + L D Sbjct: 242 LVESDKFYIYLKDWF 256 >UniRef50_C1ZEF5 Flagellar biosynthesis pathway, component FliR n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEF5_PLALI Length = 334 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 3/204 (1%) Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 P + + + +++IG+ LG +Q A ++ AG+II Q G +P + Sbjct: 125 PTPPENLGQLVLVLLGELVIGLFLGLGVQMVLAGLQMAGQIIDQQGGFGLGEVFNPDLQM 184 Query: 121 NMPVLARIMDMLALLLFLTF---NGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 N +++ L ++FL GHL ++ +V++F ++P+G L Sbjct: 185 NASQSGQLLFWLGTVIFLVLEPLGGHLVMLKSMVESFQSIPVGRAFWEPGTVELLNNLMQ 244 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 F + A P++ ++ ++ A+G L+ PQ++I +GF L V + L+ L Sbjct: 245 ASFSLAIRFAAPIMLVMCLVDAAIGFLSHTVPQINIQAVGFSLKAMVSLLLLITLFSTSP 304 Query: 238 PFCEHLFSEIFNLLADIISELPLI 261 + F E F +L +S +I Sbjct: 305 AVIVNAFQETFFVLRQGLSLPEVI 328 Score = 42.8 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 3 QVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND 62 + + ++ L+R+ L T PI +VP +++ L ++ + PS+ Sbjct: 8 EWLLTEATFQFQIFLLVLVRLSGLALTGPIFGAPAVPTNIRVLLIFVLALLVTPSIGHQA 67 Query: 63 VPVFSF 68 FS Sbjct: 68 AQGFSL 73 >UniRef50_C2KYZ8 Possible flagellar biosynthesis protein FliR n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ8_9FIRM Length = 250 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 3/249 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFSFFA 70 L L+ + ++R+ I+ P+ P+R + L M++ + +P Sbjct: 2 LVLFSFIVMRMTGAIAFNPVFGRTDYPRRARAALIFMLSAICYVHIGGELHHMPGSILEY 61 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 ++ ++++ +G LGF M+ AF +R A I+ MGL+ A DP S V + Sbjct: 62 GFMLLKELFVGFCLGFAMELAFTCLRFATSIMDFSMGLNMAQVFDPQSGSQATVSTGLFY 121 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGG-EPLNSNAFLALTKAGSLIFLNGLMLALP 189 +LLF + +GHL + LL T T P GG + GL LA P Sbjct: 122 GFMMLLFFSMDGHLRFLELLFQTIDTHPFGGISIKLLLMPKLMLSLFVASMKMGLELAFP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 ++ L L +ALG+L R+ PQ++IF + F L + +G S++ L+ I + + F Sbjct: 182 IMGLELMSEIALGILMRIIPQINIFAVNFQLKIILGFSMLYFLLIPITDKMKDFIAFAFE 241 Query: 250 LLADIISEL 258 L ++ L Sbjct: 242 SLNKVMGLL 250 >UniRef50_Q21AA3 Type III secretion system inner membrane R protein n=3 Tax=Bradyrhizobiaceae RepID=Q21AA3_RHOPB Length = 248 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 6/240 (2%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF----SF 68 + + F RV + AP S ++P +V+L LA+ +T ++P L A P + Sbjct: 9 VLVVFLIFCRVGTCMMVAPGYSRSNIPVQVRLFLALSVTLMLSPLLEATVRPALEGAAAP 68 Query: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 L L ++++G+ +G T + FAA+ T + +GL+ A VD ++P L + Sbjct: 69 AILGLIWSELVVGLMIGLTARVFFAALETLATFVASAIGLNLAGTVD--DGEHVPALVPL 126 Query: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 + + A +LF H L+ L+ ++ + L S F L +A Sbjct: 127 ITVSATVLFFMTEQHWQLLRGLLGSYRIWLPATGVGIGDGVAQLVDHLSQAFTLALRVAS 186 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 P + + +NLA+GL N++ P + ++ I P L G+ L+ + F+ Sbjct: 187 PFVIYSVIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTGREMVLQFSIAFAAWL 246 >UniRef50_C2KTP9 Flagellar biosynthesis protein FliR n=3 Tax=Mobiluncus RepID=C2KTP9_9ACTO Length = 252 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 3/254 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + + L +L + +R + P S R+ R+K L + A + Sbjct: 1 MPIVITIHLGFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQRIGPV 60 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + F + V Q IG ++ ++ AA++ AG ++ L+ G + A DP + N Sbjct: 61 ---AQTDFFVVECVIQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTN 117 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 R+ ++ A+ L T NG+ LI L +F +P G SN L + + + Sbjct: 118 QATFGRVYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTM 177 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + L +A PL+ +L ++ +GLL ++AP ++ F +GFPL + V A+M ++ Sbjct: 178 SALEIAGPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFFAPAIMVVLPQLVV 237 Query: 242 HLFSEIFNLLADII 255 L +I Sbjct: 238 KLVDVAVKSWTGVI 251 >UniRef50_P0A1M6 Surface presentation of antigens protein spaR n=7 Tax=Shigella RepID=SPAR_SHIFL Length = 256 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 107/250 (42%), Gaps = 2/250 (0%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV 65 E +L L R+ L P L+ + +++ + ++ + S + Sbjct: 7 FESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSS 66 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 +L ++I++G+ L F + F G II Q G + ++ +DPA+ ++ L Sbjct: 67 VFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSEL 126 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 A+ ++ + ++FL G ++++ + +++ P+ S + +L+ ++ Sbjct: 127 AKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL--FSQCSFRISNILTFLTLLASQAVI 184 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 LA P++ +LL + LG+L+R APQ++ F + + + I ++ I F Sbjct: 185 LASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 244 Query: 246 EIFNLLADII 255 ++ Sbjct: 245 GEHKFFTNLF 254 >UniRef50_B3RAC7 SctT: non flagellar T3S system conserved inner membrane protein. fliR/mopE/spaR family n=1 Tax=Cupriavidus taiwanensis RepID=B3RAC7_CUPTR Length = 271 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 99/237 (41%), Gaps = 2/237 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 + + R+L + P LS++++P + G+ + I ++P + V Sbjct: 20 EVIMPIVMVMPRLLTAFTVLPFLSQQAIPGVARNGIVLAIALFVSPGARIDLDAVAGGLW 79 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 L L ++ IG+ LG F A++ GE+I Q G ATF DP + + ++ Sbjct: 80 LVLIFKEAFIGLLLGMAFGLFFVALQMIGELIDFQTGSGNATFFDPVTQQEDGPMENLLS 139 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTK--AGSLIFLNGLMLAL 188 + LF G + + ++V++F P+ + +F + LA Sbjct: 140 HFGIALFAALGGFIAMTGVIVESFAFWPVMSFGPEMSLASMGFANLYAGTLFSWVVKLAA 199 Query: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 P++ LL+ + L L+ R PQ +F P+ ++V ++ ++ ++ + Sbjct: 200 PILLLLVIVELGFALIARFVPQFDVFQFAQPVKISVAFLMLVLMLAVMVDTLQGFLR 256 >UniRef50_B2VEH3 Type III secretion apparatus n=1 Tax=Erwinia tasmaniensis RepID=B2VEH3_ERWT9 Length = 242 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 4/220 (1%) Query: 14 NLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72 +Y R+ + PIL +R + VK + ++ + P + V + Sbjct: 1 MIYVVAYARLAIVFYLLPILGDRILSNLIVKNSIISLVIIGLWPCYEPDIV--TERGLIS 58 Query: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 + V++ +G+ L + F V G+I+ Q G + DP S VL+ + Sbjct: 59 VLVEECFMGLLLATVLCIPFWIVIALGDILDNQRGATINDIFDPLSGGQNSVLSAFFNFS 118 Query: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 ++F + NG L L++ L+ ++ LP G ++ + K + +MLA P+I Sbjct: 119 FGMIFFSSNGMLLLMNALMKSYQYLPQGH-DISGVNWSKAGKLLVELVECSIMLAAPVII 177 Query: 193 LLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAAL 232 +LL + LG+ R PQL+ F + L + + Sbjct: 178 VLLVTEILLGVFARYCPQLNAFSLSLTLKSFITFIIFLLY 217 >UniRef50_C9NP55 Type III secretion protein SpaR n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NP55_9VIBR Length = 259 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 108/250 (43%), Gaps = 4/250 (1%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL--PANDVPVFS 67 L WL L RVL ++ P+ S R + ++ G+A + IAP + + S Sbjct: 10 LLWLKTLSVALARVLPIVIMVPLFSSRELKGVIRYGVAFALCMFIAPLIYGDDALHTMAS 69 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 +L ++++++GI +G M F + G + Q G +P L+ Sbjct: 70 NQLSFLLLKELVLGIVIGALMAMPFWLFDSVGALFDNQRGALIGGQFNPLLSGVSSPLSH 129 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPI--GGEPLNSNAFLALTKAGSLIFLNGLM 185 ++ A+++ + G L+ + +++ P + + S+ F ++ Sbjct: 130 MLQQCAIIVLIEVVGVNVLLDTIWNSYRAWPPLRWTPAFSPDMNQQWLANISITFTKMIL 189 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 A PLI ++L + A+ LL +PQ+ +FV+ P+ VG++++ + ++ F E Sbjct: 190 YAAPLIVVMLFIEFAMALLGLYSPQMQVFVLSIPIKCLVGMAMLTIYLSVLLRFMEQDME 249 Query: 246 EIFNLLADII 255 +LL + Sbjct: 250 YFGDLLRLFV 259 >UniRef50_C0YFP8 Type III secretion apparatus protein SpaR/YscT/HrcT n=3 Tax=pseudomallei group RepID=C0YFP8_BURPS Length = 313 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 104/246 (42%), Gaps = 2/246 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 LQ ++++ ++ L R+L L++ P ++ + ++ G A + +A A Sbjct: 9 LQHLGDEFIRFIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQAL 68 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 + F + V++ +IG+ LG F A G + G + +P+S Sbjct: 69 IPQLHGAFLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQ 128 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGSLIF 180 ++A + L + F G +L+ L ++F P+G P+ + +A + Sbjct: 129 TSLMATLFGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDML 188 Query: 181 LNGL-MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 +N + +A P++ +LL ++L L + R A +L + + PL + + ++A L Sbjct: 189 MNMIARIATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSE 248 Query: 240 CEHLFS 245 S Sbjct: 249 MRGQIS 254 >UniRef50_A5VVZ1 Flagellar biosynthetic protein fliR n=3 Tax=Brucella RepID=A5VVZ1_BRUO2 Length = 239 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 4/219 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + VT + R+ A + P +S +P +V+L +A+ +FA+ P + Sbjct: 1 MPVTQLPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQR 60 Query: 62 DVPVF----SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117 V + L V ++ IG +G F A + ++ + +G S + Sbjct: 61 IVTAVDAGQPWTLFRLMVGEMFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSIT 120 Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177 + LA I+ AL LF + HL + L++++ +P+ G A + T A S Sbjct: 121 ENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALS 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVI 216 FL L +A P I + +N A+GL+N++ P + ++ I Sbjct: 181 AAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFI 219 >UniRef50_O67773 Flagellar biosynthetic protein fliR n=1 Tax=Aquifex aeolicus RepID=FLIR_AQUAE Length = 258 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 2/250 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF-F 69 +L R+++ + T P +P ++L LA ++FA+ + V V +F Sbjct: 8 EFLITLLLSYFRIVSFLFTFPFYGSFLIPNTIRLYLAFALSFAVLSFINITPVKVNTFVE 67 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L A+ ++L G + G ++ F A+ AGE+I L GL F P M + + Sbjct: 68 FLVYALNELLFGFSAGLILRLLFDALIIAGELIALHTGLGFLQMFIPGM-TQMSLFSGFF 126 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 + L+FL+ G ++I L ++F LP+G + F G+ +A+P Sbjct: 127 TLYGTLIFLSLGGGEFIILGLAESFKRLPVGSFNIFYLNPEVFLNFFYESFRLGVKIAMP 186 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 LI L LNL L ++NR PQ+++F++G PL +++G+ ++ +PLI + F + F Sbjct: 187 LILTALILNLVLAVVNRFIPQMNVFMVGLPLQVSIGLIILLLSLPLITITMSNHFQDFFK 246 Query: 250 LLADIISELP 259 + I Sbjct: 247 VFEYFIQSFK 256 >UniRef50_UPI0001744A0A translocation protein in type III secretion n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744A0A Length = 262 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 98/247 (39%), Gaps = 4/247 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 + L + L R++A +S +P +++ + + + + +T P + + Sbjct: 1 MTFDLIAHRDILLTVAFTLPRMMAALSVSPFFAQQFITGIARQVVIISLTTLAIPMVHYS 60 Query: 62 DVPVFS--FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 VP + + + +++ IG+ LGF AF G I Q G S A DP S Sbjct: 61 GVPDNPDMLYLIGVLTKEVAIGMLLGFVTGMAFWIAEGTGFFIDNQRGSSMAEMFDPMSG 120 Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEP--LNSNAFLALTKAGS 177 + + + + F G + ++++ D++ P+ + + Sbjct: 121 ESTSPFGLLFARIIGVFFFVGGGFMAFLTIMYDSYVHWPVFSWFPKMEPAFPVVFLHVLD 180 Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237 + + A PL+ + +GL+NR +PQL++F + P+ + L+ + + Sbjct: 181 KMMGLIVTFAAPLVIAMFIAEFGMGLMNRFSPQLNVFFLAMPVKSGIAAVLIIFYLVFLV 240 Query: 238 PFCEHLF 244 F + F Sbjct: 241 GFLRNEF 247 >UniRef50_Q3ADD0 Flagellar biosynthetic protein FliR n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADD0_CARHZ Length = 255 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 2/251 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAP-ILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPVFS 67 ++ ++ R+ +P I+ R VP VK +++ + + P++ + Sbjct: 1 MTQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQ 60 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 L + + LIG+ LGF AG+ + L GLS AT DP + N ++A Sbjct: 61 RNFFLLLIGESLIGLLLGFVTLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMAN 120 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 + + +L + NGH L++ L +F +P G L+ L K +L+ L + +A Sbjct: 121 FIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIA 180 Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 +P + ++L +LALG+L R APQ+++F++ F L + + I + L+P IA F + Sbjct: 181 IPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELM 240 Query: 248 FNLLADIISEL 258 L II + Sbjct: 241 EKNLLAIIRGI 251 >UniRef50_Q3BYJ8 HrcT protein n=12 Tax=Xanthomonas RepID=Q3BYJ8_XANC5 Length = 276 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 106/245 (43%), Gaps = 3/245 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP- 64 S Q +S L L +RV + P ++ S+P + G+ +++ IA PA+ + Sbjct: 12 SSQGVSLLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIAYGQPADALAK 71 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + + + ++ +G+ +GF F + G +I G + +P S Sbjct: 72 IQTAGLVGVVFKEAFVGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTP 131 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAF--LALTKAGSLIFLN 182 ++ ++ LA++ F G L L+ L ++F P+ N A + + + Sbjct: 132 VSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQSDSMMAA 191 Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEH 242 + L+ P++ +L+ ++LA+GL+ R A +L + P+ + + L+A L + Sbjct: 192 VVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFGE 251 Query: 243 LFSEI 247 + Sbjct: 252 ALGFL 256 >UniRef50_A3WGR2 Flagellar protein FliR n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR2_9SPHN Length = 264 Score = 119 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 1/254 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 L L + +R A + AP++ V + + +A+++ ++ +P Sbjct: 4 LDFGFTGLEEQLWQILFLSIRCGAALLAAPMVGGMVVAPQFRALIAIVLAVFVSTWIPLP 63 Query: 62 DVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 +P + SF A+ VQ+++IG ALGF +Q AFA A E I MGL+ AT +DPAS Sbjct: 64 PLPEMMSFAAVLAVVQEVVIGAALGFVLQVAFAVPLIAAEQISGTMGLAIATSIDPASGA 123 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 L ++ LLF GHL LL++++ LP G + + Sbjct: 124 QSGALGTYFGLILTLLFYAIGGHLLWFELLIESYRILPAGTHAFAETSARDIVAFAGYGI 183 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + LP++ +LL + + G ++R AP L++F +G P + GI+ + +MP++ Sbjct: 184 ATAAAIGLPVVLVLLCVQVVTGTISRSAPALNLFALGLPAGVLAGIAALIVVMPIMVEQF 243 Query: 241 EHLFSEIFNLLADI 254 L + Sbjct: 244 TALLVATLEQAEAL 257 >UniRef50_C5EFG8 Bifunctional flagellar biosynthesis protein FliR/FlhB n=2 Tax=Clostridiales RepID=C5EFG8_9FIRM Length = 261 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 115/257 (44%), Gaps = 4/257 (1%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL---PAND 62 L + +++ R+ +I P+ + + VP V+ GLA+ ++ IAP+ Sbjct: 2 DSSVLEYFDIFLLVFARMGGMIFINPVFARKGVPLMVRTGLALALSLLIAPAARAGGQAV 61 Query: 63 VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 V +F V+++++G+ +G Q F + AG+++ GL+ +DP + + Sbjct: 62 VLYSTFDMAEALVRELILGLGIGCVFQLFFYMLYVAGDLLDTAFGLAMGKVMDPMNGVQT 121 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE-PLNSNAFLALTKAGSLIFL 181 +L + +++ L F HL + L T+ +P+G N + + +FL Sbjct: 122 AILGQFVNIFFFLYFFATGCHLLTVRLFAYTYEVIPVGAGVFFVRNVLWYIITMSATVFL 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 + LALP + L + +G+L ++ PQ+ +FVI + +GI LM + F + Sbjct: 182 MVIKLALPFVAAEFVLEMTMGVLMKLIPQIHVFVINIQCKILLGILLMILFAYPMGAFMD 241 Query: 242 HLFSEIFNLLADIISEL 258 + +II L Sbjct: 242 GYADAMMKEAQNIIMML 258 >UniRef50_C8PRD8 Flagellar biosynthetic protein fliR n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRD8_9SPIO Length = 266 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 129/259 (49%), Gaps = 4/259 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M L L+F +R+ A+IST P+LS R+VP+ K+ LA +I F + P Sbjct: 1 MDPNPFSFLLVKAPLFFLVCVRIFAMISTTPLLSTRAVPRIAKISLAGLIGFLVMPVAYG 60 Query: 61 NDVPV--FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPAS 118 + + V F+ L V + L+G+ GF + FA+ TAG+ QMG + D + Sbjct: 61 SPLDVQGFNLDYALLVVGEALLGVLTGFFISIIFASFSTAGQFFSYQMGFGVSEVYDALA 120 Query: 119 HLNMPVLARIMDMLALLLFLTFNGHL-WLISLLVDTFHTL-PIGGEPLNSNAFLALTKAG 176 + P++ + ++ +A+L+FL G + ++ +F ++ L Sbjct: 121 QIENPLMGQFLNFIAVLIFLQIKGFQTLFLGGVLRSFQSINCFMFLEKRELVASFLVTNL 180 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 +FLN +M+A+P++ L +++++GLL++ APQ+++ GFP+T+ + L+ +P + Sbjct: 181 GSLFLNAMMIAMPVMGTLFLVHVSMGLLSKAAPQMNLLSEGFPITILLTFFLLTVSLPFM 240 Query: 237 APFCEHLFSEIFNLLADII 255 A F + F ++ Sbjct: 241 ANFFIRIMENGFAAFESLL 259 >UniRef50_P69984 Yop proteins translocation protein T n=50 Tax=Gammaproteobacteria RepID=YSCT_YERPE Length = 261 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 102/240 (42%), Gaps = 4/240 (1%) Query: 23 VLALISTAPILSERSVP-KRVKLGLAMMITFAIAPSLPAND-VPVFSFFALWLAVQQILI 80 +A P+LS++ + ++ G+ + + P++ + V +F + L ++I++ Sbjct: 20 FMACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIEVDAFTLMLLIGKEIIL 79 Query: 81 GIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTF 140 G+ +GF F A+ +AG I+ Q G + A+ ++P ++ + +F + Sbjct: 80 GLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSG 139 Query: 141 NGHLWLISLLVDTFHTLPIGGEPL--NSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198 L L+S L ++ P+ + S I L +LA PL+ + Sbjct: 140 GAFLSLLSALFHSYVNWPVASFFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAE 199 Query: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 L L++R AP L++FV+ P+ + L+ + + + ++ +I L Sbjct: 200 FGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAMLLVMDPISLLIPVL 259 >UniRef50_C6XF32 Flagellar biosynthesis protein FliR n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF32_LIBAP Length = 248 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 3/239 (1%) Query: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSFF 69 + F + RV + I P LS +P +V+L AM + + P L V + Sbjct: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L + ++ +G G ++ ++ G +I +GL+ T + + L L ++ Sbjct: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 ++ LL + H + LV ++ T+PIG E N F + F+ L L+ P Sbjct: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 >UniRef50_C2LLU3 Type III secretion system protein n=3 Tax=Proteus RepID=C2LLU3_PROMI Length = 257 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 102/256 (39%), Gaps = 4/256 (1%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRV-KLGLAMMITFAIAPSLPA 60 + V + S+L F + R+ + P L+ R + ++ K + I I PS+ Sbjct: 1 MLVLLQYIQSYLIDIFLLIARLFPIFMFIPFLNSRVLNSQLLKYIIIFYIALGIKPSITI 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 V ++ + + +++IG+ +G + F GE + Q G S ++P + + Sbjct: 61 TGVLRETWAIVL--ISELIIGLVIGLLLATPFWIASAFGEFVDNQRGASIGDTINPTTGI 118 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 A + + + FL G + L+S + +++ PIG + + + + + Sbjct: 119 ESSEFASLTGLFCMAYFLATGGLVVLMSTIKESYDVFPIG-YINKNIGYDFIGHWLNDMV 177 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 ++L P++ + +ALG+ + PQL+ F + + + ++ Sbjct: 178 KVAIILVSPVLITMFLSEVALGVYSLFCPQLNAFSLSLCIKGIIAFLVLLLFFTSAMTNE 237 Query: 241 EHLFSEIFNLLADIIS 256 + F + +S Sbjct: 238 LYHFFNSRYFYSIFMS 253 >UniRef50_C3KNB5 Type III secretion component, RhcT n=1 Tax=Rhizobium sp. NGR234 RepID=C3KNB5_RHISN Length = 273 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 102/262 (38%), Gaps = 8/262 (3%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP- 64 + L + R L +I P + ++ G+A+ I + P + Sbjct: 11 FDVIYPVLAGTAIAMARALGMIVITPAFVRLGLTGLIRSGVAIAIALPLIPGFTTTIMNG 70 Query: 65 --VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + + L +++I++G+ +G F A AG+++ LQ G + A VDP Sbjct: 71 ANLSTLMVTGLILKEIILGVIIGVMFGIPFWAAEVAGDLVDLQRGSTSAQLVDPLQATET 130 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSLIF 180 + + + LF G L ++ P+ L S A A+ + Sbjct: 131 SIAGTFFVLALVALFFKSGGFSLLADTYYRSYEIWPVTSFSPALGSGAAEAVLAILDRVM 190 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 G++L P++ LL +L L L+RM+PQL +F + + + L+ + + + Sbjct: 191 QIGVLLIAPIVLALLIADLMLAYLSRMSPQLHVFDLSLAIKNLLFAILIVLYLNYLLQYM 250 Query: 241 EHLFS---EIFNLLADIISELP 259 F+ E +L ++ P Sbjct: 251 VAEFAILKEAPAMLRGLLGTTP 272 >UniRef50_Q01PP9 Type III secretion system inner membrane R protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP9_SOLUE Length = 257 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 114/257 (44%), Gaps = 1/257 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 + + L + L RV + PI R P+ V+ LA+ A+ PA Sbjct: 1 MHGNLALSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAV 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + V + + +G+A+G ++ A+ A +++GLQ G ++A+ +DP + Sbjct: 61 DAAQVGPATLAGWLLSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEA 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 + +L +++ +LF ++ L + +P G + + L + G+++F Sbjct: 121 DSGILLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 G+ LALP++ LL+ L++AL LL R+ QL + + FP+ + + +++ + Sbjct: 181 SVGVRLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVV 240 Query: 241 EHLFSEIFNLLADIISE 257 + + ++ Sbjct: 241 REISGQAMIAAHRMLGL 257 >UniRef50_A3D417 Type III secretion protein SpaR/YscT/HrcT n=35 Tax=Gammaproteobacteria RepID=A3D417_SHEB5 Length = 266 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 109/263 (41%), Gaps = 5/263 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPIL-SERSVPKRVKLGLAMMITFAIAPSLP 59 M + + L + ++R L ++ P+ ++ L +M ++ Sbjct: 1 MTTLLPNLLTAQLPVLALCMMRPLGMMLLLPLFKGGAMGSALIRNSLILMFALPTVLAMD 60 Query: 60 ANDV---PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 ++ + L +++++G+ LGF F A+ AG +I G S +T ++P Sbjct: 61 EMQPILQQADTWMLISLFGKEMIVGVLLGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNP 120 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG-GEPLNSNAFLALTKA 175 L + + + +LFL G +L++ L ++ LP G L + + Sbjct: 121 LMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQLPPGFNLTLAQPLMVFIAHE 180 Query: 176 GSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235 L+ L A+P + +++ +++ALGL+NR A QL++F + P+ + + L+ + Sbjct: 181 WQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLSMPIKSALVLLLLIYSLQF 240 Query: 236 IAPFCEHLFSEIFNLLADIISEL 258 S + + + L Sbjct: 241 ALSHYLQTISGVEQHVDILFGLL 263 >UniRef50_A9BHY5 Flagellar biosynthetic protein fliR n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHY5_PETMO Length = 257 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 128/253 (50%), Gaps = 2/253 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN-DVPV 65 E L +YF+ RV + P S VP +K+ + + I++ + + + Sbjct: 4 ENLTYQLWVYFFIFARVAGITFFIPFFSTTFVPVHIKVFITLFISYLVLFEVNGTFPINS 63 Query: 66 FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVL 125 ++ + + G ++G F A + AGE IG+QMG + A DP + + ++ Sbjct: 64 SPLVIIFYLLMNFVFGSSVGLIANILFYAFQFAGETIGIQMGFAMANVFDPVTSDEVSLV 123 Query: 126 ARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLM 185 + + + ++LLF F G L L S+++D+F+ +P+ L + F+ ++ +F GL Sbjct: 124 SELSFLFSMLLFFIFKGPLILYSIIIDSFNKVPV-VFTLAPDGFMVFSQKLFDVFTIGLQ 182 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 L++P I ++ L +ALG+++R+ PQ+++F++G PL + VG L ++ + LF Sbjct: 183 LSMPFIAFMILLKVALGIVSRLIPQVNVFMVGIPLEILVGFLLFLGVILIWEDQFTTLFF 242 Query: 246 EIFNLLADIISEL 258 ++ + + + L Sbjct: 243 QLMEWIKNSMILL 255 >UniRef50_A0RCA1 Flagellar biosynthetic protein n=70 Tax=Bacillus cereus group RepID=A0RCA1_BACAH Length = 253 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 116/246 (47%), Gaps = 1/246 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + F+ R+ + + P S RS+P K+ + ++ +A + + + ++ Sbjct: 3 MELWAATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSITVADQVDVSHI-KTTWD 61 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 A QI+IG++L ++ + + AG I+ +GLS A+ D + +L+ I Sbjct: 62 VAAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIF 121 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 D+ L++F++ G + ++ ++ +F + L ++ +L + + +ALP Sbjct: 122 DIFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L+ L +N L L+ + APQL+IF+ F + +T GI +A +P++ +++ + Sbjct: 182 LMGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNMTDVLLE 241 Query: 250 LLADII 255 + Sbjct: 242 EYTKLF 247 >UniRef50_A0LT72 Type III secretion system inner membrane R protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT72_ACIC1 Length = 259 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 109/240 (45%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L + +R A + PI R +P VK AM + F ++ +L Sbjct: 7 TPLLVAFLLATIRTSAWLVVVPIFGTRIIPGMVKAAFAMALAFPVSGALAPLAPAPQVLP 66 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 +Q + G+A+G FAAVR AG ++ G S DP + N VLAR+ Sbjct: 67 LCTAILQNVAAGLAMGVVTLTLFAAVRAAGGLLDYFGGFSLTYAFDPMAVQNDSVLARMY 126 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 D+LA+ L G+L L+ L+ ++ +P+ T ++ L +A P Sbjct: 127 DLLAVTLLFAGGGYLLLLKGLLSSYTVIPLASSHPARILAELATVNIGSFAVSCLEIAGP 186 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 L+ +L+ ++ LGLL ++AP L++F +GFPL + V ++L+ + + L I + Sbjct: 187 LLAVLVVADIGLGLLTKIAPALNVFSLGFPLKILVTLTLVGGTFVALPHAVDALVERILH 246 >UniRef50_C7C777 Flagellar biosynthetic protein fliR n=8 Tax=Methylobacterium RepID=C7C777_METED Length = 258 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 4/257 (1%) Query: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M + RV L+ P L E+ + R++L LA+++T + P++ Sbjct: 1 MTTPLDLLLPGLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRP 60 Query: 61 NDVPVFSF----FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 + + L + +ILIG+ LG ++ AA++TAG +I Q+GLS+A VDP Sbjct: 61 MLPTGNAALAAPSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDP 120 Query: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 + + ML + L L + H + + ++ LP G P ++A A Sbjct: 121 TMGGQQAAIGNFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALAAF 180 Query: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 S F + ++ P I + NL LG+L+R+ PQL +F + P ++ +G+ L+ + LI Sbjct: 181 SRSFALAVRISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLI 240 Query: 237 APFCEHLFSEIFNLLAD 253 Sbjct: 241 MGLFLDDLGRYLGAFLG 257 >UniRef50_C5ALL4 Type III secretion-associated protein n=21 Tax=Burkholderia RepID=C5ALL4_BURGB Length = 277 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 93/239 (38%), Gaps = 3/239 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSF 68 + +L L +R+ +++ P ++ + V+ + ++ + +A P Sbjct: 15 VMGYLTLIGVCSVRLFVIVTIFPPSADGVLQGPVRNAIVLLFSTFVAYGQPLAFADGLHG 74 Query: 69 FALWLA-VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 AL +++ +IG+ LGF F AG I G + A +P + A Sbjct: 75 AALVEIGLREGMIGLVLGFAASSVFWVAECAGYYIDDLTGYNNAQVQNPLRNEQATPTAT 134 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAF--LALTKAGSLIFLNGLM 185 ++ +A + F + G +L+ L ++H P+ ++ + K + Sbjct: 135 LLQQVATMAFWSLGGMTFLLGTLYQSYHWWPLNAPTIDVSNVLEAFAMKQTDTLMQQVAK 194 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 LA P + +LL ++ A + A +L + + P+ V + L+A + + Sbjct: 195 LAAPAVMILLLIDFAFAFAAKSASKLELMGLSQPVKGAVAVLLLALFVGVFVDQVRDQL 253 >UniRef50_Q3V884 Flagellar biosynthetic protein FliR n=16 Tax=Listeria RepID=Q3V884_LISMF Length = 253 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 110/249 (44%), Gaps = 1/249 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 + RV + + P+L R++P VK+ M I+ +A + + + + Sbjct: 3 FEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITMLP-D 61 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L +++ G+AL ++ + AG +I +G S +DP+ + A I+ Sbjct: 62 LLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAIL 121 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 D +++FL+ G +LI L+ +F L + + +ALP Sbjct: 122 DTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIALP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 ++ + +N+ L +++ APQ++IF+ F + +T GI ++A +P+++ ++L E+ Sbjct: 182 IMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMIQ 241 Query: 250 LLADIISEL 258 L Sbjct: 242 QYVSFFDYL 250 >UniRef50_A3W5F7 Flagellar biosynthetic protein FliR n=3 Tax=Rhodobacteraceae RepID=A3W5F7_9RHOB Length = 254 Score = 116 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 2/238 (0%) Query: 11 SWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 L L+ LRV +I P E+SVP R+K+ L T AP++ + + Sbjct: 13 EVLWLHALVFLRVAPIIGLLPGFGEQSVPMRIKVVLVFAFTLIAAPAIAPDLPDHVHAPS 72 Query: 71 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMD 130 + + L+G+ +G ++ A++ AG I LS + AS MP + ++ Sbjct: 73 ALTILSETLVGLIIGIGLRLFLMALQMAGSIAAQSTSLS--QILGNASLTPMPSIGHLLA 130 Query: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 + L + + H+ + L++ ++ P+ G S + F G MLA P Sbjct: 131 TGGVALMMIMDLHVRVAELMILSYRVFPVQGVFKVSAITQWGVSQIAHAFSLGFMLAAPF 190 Query: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 + + + NL LG++NR PQ+ + +G P + + ++ + P + F+ Sbjct: 191 VLVSVLYNLTLGVINRAMPQMMVAFVGAPAITALALFVLMLVAPALLMAWAQAFAGFI 248 >UniRef50_C6CGR9 Type III secretion protein SpaR/YscT/HrcT n=18 Tax=Gammaproteobacteria RepID=C6CGR9_DICZE Length = 267 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 98/236 (41%), Gaps = 4/236 (1%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 T + ++ + R+ + P+ S + ++ +A+ I A ++ + Sbjct: 6 TIQNIYDFIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVAIAIALVPAGAIQQQMLT 65 Query: 65 VFSFFALW--LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNM 122 + + L +++++IG+ LG + F + G + Q G ++PA + Sbjct: 66 TTITWPMLPALLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDA 125 Query: 123 PVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGE--PLNSNAFLALTKAGSLIF 180 L ++ L +L + G LL D++ P PL+ F F Sbjct: 126 TPLGHMLKELFTMLLVLTIGFSGFTQLLWDSYRLWPALDFLPPLSEQGFHTYLDLLKETF 185 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 + ++ A PL+ LLL L ++ +L+ +PQL ++V+ P G++ MP++ Sbjct: 186 QHMIVYAGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVL 241 >UniRef50_Q1NCV3 Translocation protein in type III secretion n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCV3_9SPHN Length = 268 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 111/253 (43%), Gaps = 3/253 (1%) Query: 9 WLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF-S 67 W+ L L R + P+ ++ ++P V+ + + P V + Sbjct: 14 WMMELLLVGIASARFGFAFAIIPLFAQNTIPATVRNAIILTFGGVAFALQPNFMVQDIGT 73 Query: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 F + +++ IGIA+GF A+ AGEII ++G + ++P + Sbjct: 74 FGWAIMLLREAGIGIAIGFFFATILWAMEAAGEIIDAKVGATIGQILEPNGGTMTSLTGS 133 Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLIFLNGLM 185 ++ LA +LF + G L L+ ++++F PI L+ + + + L+ Sbjct: 134 LLQRLAHVLFAAWGGLLLLVGTIMESFVIWPIAKSWPVLDPQSLILFEGEFGRLMTLALV 193 Query: 186 LALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFS 245 A P++ +L ++ ALGLLNR A QL++F + + +L+ L+PL+A S Sbjct: 194 FAAPILVMLYVVDAALGLLNRFAQQLNVFSLSLSIKSWAATALLLILVPLLAQAVLKDLS 253 Query: 246 EIFNLLADIISEL 258 +++ + L Sbjct: 254 TRSDIVRAVARTL 266 >UniRef50_B5JK51 Bacterial export protein, family 1 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK51_9BACT Length = 256 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 108/249 (43%), Gaps = 1/249 (0%) Query: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDV-PVF 66 L + L+ L RVL L AP+ S +S+P K+ LA + P + P Sbjct: 2 FTLEDITLFLLILTRVLGLFLAAPVFSHKSIPVIAKVTLAAAFAMMVFPMVDHEVANPAS 61 Query: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 + +++ +G+ +G ++ F + A +I +++GL DP S + Sbjct: 62 IWSLTLWFAKELTVGLMMGIAIRMVFFVLDFASHVITVEIGLQPGPAFDPGSSSSQGNPL 121 Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 + L+ L ++ + +F PIG LNS A + + IF G+++ Sbjct: 122 GTIIYFLGLMLLLSGSEYNMLRAFMRSFEIAPIGFFGLNSFAADFIILKTADIFRIGILM 181 Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 P++ + +NL L ++ P+L++F++ F + +G +++ + L+A + E Sbjct: 182 GAPIVAVNFLVNLVFATLGKVVPKLNVFILSFSARIFLGTTVLTLTVGLLAHYAMAYIEE 241 Query: 247 IFNLLADII 255 ++ I Sbjct: 242 TPEMMLRFI 250 >UniRef50_Q2SEX2 Flagellar biosynthesis pathway, component FliR n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEX2_HAHCH Length = 226 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 106/224 (47%), Gaps = 3/224 (1%) Query: 37 SVPKRVKLGLAMMITFAIAPSLPAN--DVPVFSFFALWLAVQQILIGIALGFTMQFAFAA 94 +P R++ L + + PA +P ++++G+A+ + AF Sbjct: 4 RLPGRIRFFLVCALALLMVRFSPATGVQLPSSVVDMALACANELVLGLAMALGLHAAFTV 63 Query: 95 VRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTF 154 + AG +I Q G A ++PA++ P++ I+ A +F + + H +I L + Sbjct: 64 FQIAGRLIDFQSGFGAANIMNPATNSAEPLMGTILLFFATFVFFSMDAHHMVIKGLAYSV 123 Query: 155 HTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIF 214 +P G + + F K L+F ++LA P++ +L L++ + ++ R PQ++++ Sbjct: 124 AQVPPGSGLVRMD-FPGAMKQFGLMFSFAMVLAAPVLAVLFLLDVGVAVMARTMPQMNVY 182 Query: 215 VIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISEL 258 + PL + +GI + A + + P +F+ IF + +++ + Sbjct: 183 FLFLPLKVALGIIVTALSLKYLTPLIGEVFNSIFRYWSGMLTVI 226 >UniRef50_B9L5A9 Flagellar biosynthetic protein fliR n=2 Tax=Thermomicrobia (class) RepID=B9L5A9_THERP Length = 260 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 1/248 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 ++VT+ S + L+ + RV ++S P ++VP ++ LA+++ A+ P +P + Sbjct: 1 MEVTTPLIPSSIALFVLVVTRVGLVLSLLPGFGSQAVPLPARVALAVVLALALVPFVPTD 60 Query: 62 DVPVF-SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + ++++ G+ALG + FAAV A +IG Q+G A +PA + Sbjct: 61 ASGLSDPTVFAVALARELVTGLALGLAVAAVFAAVEMAASLIGYQLGFGLAATFNPAFGM 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 L + LA L+ NGH L+ L + LP G + + A+ +F Sbjct: 121 QGTALNTLYLALAALVLFGTNGHHQLVGALARSLILLPPGAAAPDVDTPRAVIALTGAMF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + L + LP+ LL ++ LGLLNRM PQ+S+F +G P + +G ++ +P + Sbjct: 181 SDALRIGLPIAGSLLVADIGLGLLNRMVPQMSVFFVGLPAKILLGFLVLLLSLPFLLQIL 240 Query: 241 EHLFSEIF 248 H+ ++ Sbjct: 241 VHVSTDGL 248 >UniRef50_Q0G4G4 Flagellar biosynthesis protein n=2 Tax=Aurantimonadaceae RepID=Q0G4G4_9RHIZ Length = 250 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 5/247 (2%) Query: 6 SEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---- 61 SE +++ +F R+ + P S +P +V+L LA I+ A++P L Sbjct: 2 SEAASAFVFAHFLVFCRIGTCLMLLPGYSSNRIPAQVRLFLAFAISLALSPLLLPLIEPL 61 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 V L L +++ G +G + A+ G +I +G+ Sbjct: 62 VVGASDARRLELVFSEMMTGFFIGLLGRCFLIALSFVGYVIANAIGMGQ-QLGPVYEDSP 120 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 P + ++ M A +L N H + LV ++ LP + + LT L F+ Sbjct: 121 DPAIGTLITMTATVLIFITNLHAEIARALVASYTALPAAEGFGIQASLVNLTDNLKLTFV 180 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 L +A P + + +N A+GL N++ PQ+ ++ + P L G+ L ++ Sbjct: 181 LCLRIASPFVLYAIIVNFAIGLANKLTPQIPVYFVSLPFVLAGGLILFGYVIGDFLIIFM 240 Query: 242 HLFSEIF 248 + F Sbjct: 241 NAFEGWV 247 >UniRef50_A1T0L3 Flagellar biosynthetic protein fliR n=4 Tax=Gammaproteobacteria RepID=A1T0L3_PSYIN Length = 259 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 135/255 (52%), Gaps = 2/255 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PA 60 + ++ + WL L++WP +R+ + API + SVP +V+L LA+++ +AP + P Sbjct: 1 MSISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQ 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 + FS A+ L+V Q+L G+ GF Q F T G+ I +QMGL+ A DPA+ + Sbjct: 61 PAIDPFSLQAIILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGV 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 ++ ++ R+ LLFL F+GHL +++L+V++F PI + + + +F Sbjct: 121 SVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPIKQG-FSLGSLALIISMMVWMF 179 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 + +A+P I +L N + G +N+ AP L++F +GFP+T+ +G+ + I Sbjct: 180 ASAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIY 239 Query: 241 EHLFSEIFNLLADII 255 + + + Sbjct: 240 FEILMQAIKFARSYM 254 >UniRef50_B1ZR30 Type III secretion system inner membrane R protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR30_OPITP Length = 249 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 125/246 (50%), Gaps = 1/246 (0%) Query: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 L +L + LR L +I P+++ R +P +LG+ + I +A +P + VP + Sbjct: 3 LGFLVTWMMVFLRTLGVILQLPLVAGRPIPVMARLGICVCIASLLAGVVPESSVPATLWG 62 Query: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 L +IL+G+ALGF ++ AFAAV AG I+ ++G++ + P+ A ++ Sbjct: 63 LLAATAGEILVGLALGFMVRLAFAAVEMAGRILSSEIGITMGGGMGVPEPATEPMTA-LI 121 Query: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 A++LF F GHL ++S L +F P G L +A L A S + G+ +A P Sbjct: 122 STFAVVLFFAFGGHLMMLSGLARSFVLAPAGQPMLAPSASDLLINATSHLIEVGVRIAAP 181 Query: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 I + + L +L R+ P++++F++ F + L G +L+A+ LIA + F + Sbjct: 182 FIAMNFLVLLTFSVLGRVLPKMNVFIVSFSMRLIAGFTLLASGGTLIARYLYLEFDDTPV 241 Query: 250 LLADII 255 + + Sbjct: 242 RMLQLF 247 >UniRef50_B1T8E1 Type III secretion system inner membrane R protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T8E1_9BURK Length = 252 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 2/246 (0%) Query: 5 TSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP 64 +++ W LRV L+ AP ++ VP R+++ L + + A+A LPA Sbjct: 2 SADTLTGWAMASLLLSLRVGPLVMFAPPFAQLRVPLRIRVCLVLALAGALATPLPAQLRN 61 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + A+ ++ +G L F +Q AFAA+ AG + +Q G AT +DP S P+ Sbjct: 62 A-PAMLVASAISELALGFTLAFPLQAAFAALSFAGRALDVQAGFGLATVIDPGSRSQAPL 120 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 ++ + A + HL L+ L+ + +P G + S + A + G+ Sbjct: 121 FGTLLTLGAGAICFASGAHLELLRLVAASIERMPPGTARIVS-SPQAFIGYFGRVMGIGI 179 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 ++ L ++L++ L+R PQL+ ++G + I + A + L+ P L Sbjct: 180 GAVAAVMLALFLIDLSIAFLSRTLPQLNALMLGLQVKAIAAIVVTALSIGLLGPVTLRLL 239 Query: 245 SEIFNL 250 Sbjct: 240 RASLEF 245 >UniRef50_Q16DQ9 Flagellar biosynthetic protein FliR n=5 Tax=Rhodobacteraceae RepID=Q16DQ9_ROSDO Length = 256 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 2/254 (0%) Query: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 LQ S + F RV AL + P E+++ RVKL A+ T +AP+LP Sbjct: 4 LQEFFPFLNSAIWHGFVVFCRVAALAAVLPAFGEQTLSARVKLAAALAFTVIVAPALPII 63 Query: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLN 121 P ++ + +++ G+A+G ++ A++TAG I LS + A+ Sbjct: 64 PAPGSIGAVSFVILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLS--QVLGGAAVDP 121 Query: 122 MPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL 181 +P + I+ + L L + H+ + L++ ++ +P+G ++ T + F Sbjct: 122 LPAMGYILVIAGLALAVMAGLHVKVAQLIILSYDFMPVGRFANAADLSEWGTSQVAHAFS 181 Query: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 LA P + L + N ALG +NR PQL + +G P+ G++L+ P + Sbjct: 182 LAFTLAAPFVILSVLYNFALGAINRAMPQLMVAFVGAPVITLGGLALLLISAPYMLTVWL 241 Query: 242 HLFSEIFNLLADII 255 ++ Sbjct: 242 GAMDRYLADPFGVL 255 >UniRef50_C8WWG4 Type III secretion system inner membrane R protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG4_ALIAD Length = 258 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 2/254 (0%) Query: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVP 64 L NL+ R I APILS P K+ LA+ + PS+ A D+ Sbjct: 3 NDVLEHFNLFLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVPDIA 62 Query: 65 VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPV 124 + + ++G+ LGF + F + AG+++ LQ+G++ A P V Sbjct: 63 TQPGPFVVDFALEAVVGVVLGFVATWIFNTMNIAGQLVDLQIGMAVADLAMPGFGQQAGV 122 Query: 125 LARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGL 184 + + ++ LLF+ G L S ++++F +PI L ++ + + L G+ Sbjct: 123 FSSVYNVWFSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLMGV 182 Query: 185 MLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244 +ALP+ L ++ LL R PQ++ FV+ P L VG++ A +P+ L Sbjct: 183 DVALPVFASLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTVGLFRQLL 242 Query: 245 SEIFNLLADIISEL 258 + +F L ++ + Sbjct: 243 NLVFLNLQSVMRLV 256 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.168 0.462 Lambda K H 0.267 0.0515 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,844,284,612 Number of Sequences: 3077464 Number of extensions: 92889382 Number of successful extensions: 623653 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 881 Number of HSP's successfully gapped in prelim test: 2082 Number of HSP's that attempted gapping in prelim test: 617122 Number of HSP's gapped (non-prelim): 5470 length of query: 261 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 135 effective length of database: 652,635,892 effective search space: 88105845420 effective search space used: 88105845420 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 92 (39.7 bits)