15/01/2012 18:00:56 : INFO  : Run start: Sun Jan 15 18:00:56 GMT 2012
15/01/2012 18:00:57 : INFO  : Initialised job
15/01/2012 18:00:58 : INFO  : Renaming log file 'phyre2_20120115_180056.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/ea828cb906ac0f77/phyre_20120115_180056.log'
15/01/2012 18:00:58 : INFO  : Initialised job:
Sequence
>batch____
MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQL
RTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRG
TLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPV
IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL
DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK
PALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH
HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRII
QLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE
QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVL
ARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGS
FLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG
YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLK
RLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVP
GKVIRLEVNEDRIVAVQ

15/01/2012 18:01:00 : INFO  : Checked sequence
15/01/2012 18:01:03 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 18:01:03 : INFO  : PSI-BLAST 3 iterations
15/01/2012 18:04:33 : INFO  : PSI-BLAST 5 iterations
15/01/2012 18:09:15 : INFO  : Finished PSI-BLAST
15/01/2012 18:09:15 : INFO  : Running Buildali to generate a3m file
15/01/2012 18:46:18 : INFO  : Converting to HMM
15/01/2012 18:46:38 : INFO  : Calibrating HMM
15/01/2012 18:47:07 : INFO  : Searching HMM database
15/01/2012 19:01:59 : INFO  : Finished buildali
15/01/2012 19:02:01 : INFO  : Predicting secondary structure
15/01/2012 19:02:12 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 19:02:14 : INFO  : Predicting Disordered regions
15/01/2012 19:02:19 : INFO  : Predicted Disorder (Disopred)
15/01/2012 19:02:21 : INFO  : Running memsat_svm check
15/01/2012 19:02:43 : INFO  : Globular protein
15/01/2012 19:02:44 : INFO  : Predicted Transmembrane (memsat_svm) ID 'ea828cb906ac0f77'
15/01/2012 19:02:47 : INFO  : Initialising fold library search
15/01/2012 19:02:53 : INFO  : Initialised search input
15/01/2012 19:02:55 : INFO  : Building Ensemble models
15/01/2012 19:02:59 : INFO  : Building hh.c1qvrB_.model.1.pdb
15/01/2012 19:03:20 : INFO  : Building hh.c3pxiB_.model.2.pdb
15/01/2012 19:03:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ea828cb906ac0f77/hh.c3pxiB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ea828cb906ac0f77/c3pxiB_.2.pdb
15/01/2012 19:03:39 : INFO  : Building c1qvrB_.1.pdb
15/01/2012 19:03:57 : INFO  : Building c3pxiB_.2.pdb
15/01/2012 19:04:14 : INFO  : Building c1r6bX_.3.pdb
15/01/2012 19:04:28 : INFO  : Building c3pxgA_.4.pdb
15/01/2012 19:04:44 : INFO  : Building d1qvra3.5.pdb
15/01/2012 19:05:00 : INFO  : Building d1r6bx3.6.pdb
15/01/2012 19:05:17 : INFO  : Building c3cf1C_.7.pdb
15/01/2012 19:05:32 : INFO  : Building d1qvra2.8.pdb
15/01/2012 19:05:50 : INFO  : Building d1um8a_.9.pdb
15/01/2012 19:06:08 : INFO  : Building d1g41a_.10.pdb
15/01/2012 19:06:24 : INFO  : Building d1ofha_.11.pdb
15/01/2012 19:06:43 : INFO  : Building d1e94e_.12.pdb
15/01/2012 19:06:59 : INFO  : Building c3hteC_.13.pdb
15/01/2012 19:07:16 : INFO  : Building d1r6bx2.14.pdb
15/01/2012 19:07:33 : INFO  : Building c2p65A_.15.pdb
15/01/2012 19:07:48 : INFO  : Building d1jbka_.16.pdb
15/01/2012 19:08:07 : INFO  : Building d1ny5a2.17.pdb
15/01/2012 19:08:25 : INFO  : Building c2c99A_.18.pdb
15/01/2012 19:08:42 : INFO  : Building c1ny5A_.19.pdb
15/01/2012 19:08:57 : INFO  : Building c1xwiA_.20.pdb
15/01/2012 19:09:59 : INFO  : Finished HH model building
15/01/2012 19:10:02 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 19:11:13 : INFO  : html domain output complete ID 'ea828cb906ac0f77'
15/01/2012 21:45:06 : INFO  : Run end  : Sun Jan 15 21:45:04 GMT 2012
