43 c3h4mC_ Probab=99.81   E-value=2.4e-18  Score=135.91  Aligned_columns=208  Identities=22%

Q ss_pred             HCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHH
Q ss_conf             304786899999998887886----1444656666189985798305899999999973488886588551230441013
Q batch____       568 HRVIGQNEAVDAVSNAIRRSR----AGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSV  643 (857)
Q Consensus       568 ~~~~~q~~a~~~i~~~~~~~~----~~~~~~~~p~~~~Ll~Gp~G~GKT~la~aLA~~~~~~~~~liri~~se~~~~~~~  643 (857)
                      ..++||++++..+.+.+....    ..-....+++.++||+||||||||++|+++|+.+   +.+++.++++.+......
T Consensus        13 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~~iA~~l---~~~~~~~~~~~~~~~~~~   89 (261)
T c3h4mC_          13 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKFIG   89 (261)
T ss_dssp             GGCCSCHHHHHHHHTTTTHHHHCHHHHHHHTCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGSCCCSTT
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCEEECCCCCCCCCHH
T ss_conf             88258299999999999999769998984789978659997696558899999999985---104163054312421000


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHC-----------CHHHHHHHHHHHHCCEEECCCCCCCCCCCE
Q ss_conf             553046664310011126899996089988999330566-----------989999999996237056158832045676
Q batch____       644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNT  712 (857)
Q Consensus       644 ~~~~g~~~g~~~~~~~~~l~~~~~~~~~~vi~lDei~~~-----------~~~v~~~l~~~l~~g~~~d~~g~~~~~~~~  712 (857)
                      ..          ......+...++..+++++++|++|..           +......+...+      ..-....+.+++
T Consensus        90 ~~----------~~~~~~~~~~a~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~l~------~~ld~~~~~~~~  153 (261)
T c3h4mC_          90 EG----------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL------AEMDGFDARGDV  153 (261)
T ss_dssp             TT----------THHHHHHHHHHHHTCSEEEEEECGGGTSBCCSSSCCCSTHHHHHHHHHHH------HHTTSSCSSSSE
T ss_pred             HH----------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH------HHHHCCCCCCCE
T ss_conf             14----------67789999999840252221023554431035678750467887776789------985223456880


Q ss_pred             EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99982388615655420123201235777898875089578600--6819983899989999999999999999988449
Q batch____       713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINR--IDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERG  790 (857)
Q Consensus       713 iii~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~  790 (857)
                      +||+|||.                         ...+.|.|..|  |+.++.+++++.+++.+|++.++++....     
T Consensus       154 ~ii~ttn~-------------------------~~~l~~~l~~~~~f~~~i~~~~~~~~~r~~il~~~~~~~~~~-----  203 (261)
T c3h4mC_         154 KIIGATNR-------------------------PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-----  203 (261)
T ss_dssp             EEEEEESS-------------------------GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHTTTTSCBC-----
T ss_pred             EEEEEECC-------------------------CCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC-----
T ss_conf             89997122-------------------------226986661933123787368999899999999971004889-----


Q ss_pred             CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             96899889999999626998778337999999999999999
Q batch____       791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ  831 (857)
Q Consensus       791 ~~~~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~  831 (857)
                           ++..+..|++.  +..|.+|+|++++.+.....+.+
T Consensus       204 -----~~~~l~~ia~~--t~G~s~~di~~l~~~A~~~a~~~  237 (261)
T c3h4mC_         204 -----EDVNLEEIAKM--TEGCVGAELKAICTEAGMNAIRE  237 (261)
T ss_dssp             -----SSCCHHHHHTT--STTCCHHHHHHHHHHHHHHHHHT
T ss_pred             -----CCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -----84457999986--57999899999999999999972