31 c3b9pA_ Probab=99.86   E-value=1.1e-19  Score=144.52  Aligned_columns=203  Identities=26%

Q ss_pred             HCCCCHHHHHHHHHHHH---HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHH
Q ss_conf             30478689999999888---788614446566661899857983058999999999734888865885512304410135
Q batch____       568 HRVIGQNEAVDAVSNAI---RRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVS  644 (857)
Q Consensus       568 ~~~~~q~~a~~~i~~~~---~~~~~~~~~~~~p~~~~Ll~Gp~G~GKT~la~aLA~~~~~~~~~liri~~se~~~~~~~~  644 (857)
                      ..++|+++++..+...+   ........+...|+.++||+||||||||++|+++|..+   +.+++.++++.+     ..
T Consensus        20 ~di~G~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~~---~~~~~~~~~~~~-----~~   91 (268)
T c3b9pA_          20 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASL-----TS   91 (268)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTT-----SS
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCEECCCCCC-----CC
T ss_conf             8834819999999999999975899861378987659998888985768999999983---897111234544-----32


Q ss_pred             HHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHC------CHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEC
Q ss_conf             53046664310011126899996089988999330566------989999999996237056158832045676999823
Q batch____       645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS  718 (857)
Q Consensus       645 ~~~g~~~g~~~~~~~~~l~~~~~~~~~~vi~lDei~~~------~~~v~~~l~~~l~~g~~~d~~g~~~~~~~~iii~ts  718 (857)
                      ..+|..     .......+..+++..++|+||||+|..      .......++..++            +..++++|+||
T Consensus        92 ~~~~~~-----~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~l~~~~------------~~~~v~vI~tt  154 (268)
T c3b9pA_          92 KYVGDG-----EKLVRALFAVARHMQPSIIFIDEVDSLLSEREASRRLKTEFLVEFD------------GLPRIVVLAAT  154 (268)
T ss_dssp             SSCSCH-----HHHHHHHHHHHHHTCSEEEEEETGGGTSBCCCCSHHHHHHHHHHHH------------HCCCEEEEEEE
T ss_pred             CCCCCC-----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHC------------CCCCEEEEEEC
T ss_conf             235822-----7999999999987389864300068732212442356777865113------------67887999815


Q ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             88615655420123201235777898875089578600681998389998999999999999999998844996899889
Q batch____       719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE  798 (857)
Q Consensus       719 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~  798 (857)
                      |.                         ...+.|.++.|++..+.|++++.+++.+|++.++         .+.....++.
T Consensus       155 n~-------------------------~~~~~~~~~rr~~~~~~~~~p~~~~r~~i~~~~l---------~~~~~~~~~~  200 (268)
T c3b9pA_         155 NR-------------------------PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL---------QKQGSPLDTE  200 (268)
T ss_dssp             SC-------------------------GGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH---------GGGSCCSCHH
T ss_pred             CC-------------------------HHHCCHHHCCHHHHHHHCCCCCHHHHHHHHHHHH---------HCCCCCCCHH
T ss_conf             88-------------------------4548978718255413457899999999999972---------0048762000


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999626998778337999999999999999
Q batch____       799 ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ  831 (857)
Q Consensus       799 ~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~  831 (857)
                      .+..+++.  +..+.++++++++.......+.+
T Consensus       201 ~l~~la~~--t~g~s~~di~~l~~~A~~~a~~~  231 (268)
T c3b9pA_         201 ALRRLAKI--TDGYSGSDLTALAKDAALEPIRE  231 (268)
T ss_dssp             HHHHHHHH--TTTCCHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             08999973--61489799999999999999997