123 c2cnwF_ Probab=98.15   E-value=0.00015  Score=46.78  Aligned_columns=167  Identities=17%

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHH-----------HHHHHHHHCCCCCC--CCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             5321000179886430478689999999-----------88878861444656--6661899857983058999999999
Q batch____       554 SEREKLLRMEQELHHRVIGQNEAVDAVS-----------NAIRRSRAGLADPN--RPIGSFLFLGPTGVGKTELCKALAN  620 (857)
Q Consensus       554 ~~~~~~~~l~~~L~~~~~~q~~a~~~i~-----------~~~~~~~~~~~~~~--~p~~~~Ll~Gp~G~GKT~la~aLA~  620 (857)
                      +-...+..+...|-+.-+..+-+.+-+.           ..+.........+.  .++..++|+||||+|||+.+..||.
T Consensus         2 d~~~~l~el~~~Ll~~dv~~~~a~~l~~~i~~~~~~~~~~~i~~~l~~~l~~~~~~~~~vi~~vG~~G~GKTTt~~klA~   81 (260)
T c2cnwF_           2 NLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPPVEPKGRVVLVVGVNGVGKTTTIAKLGR   81 (260)
T ss_dssp             CTTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHTCCCCCCSSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             87899999999999779998999999998464148999999999999850566446882899993088760248999999


Q ss_pred             HHCCCCCCEEEEEHHHCCCCCHHH----------HHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCHHH----
Q ss_conf             734888865885512304410135----------530466643100111268999960899889993305669899----
Q batch____       621 FMFDSDEAMVRIDMSEFMEKHSVS----------RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDV----  686 (857)
Q Consensus       621 ~~~~~~~~liri~~se~~~~~~~~----------~~~g~~~g~~~~~~~~~l~~~~~~~~~~vi~lDei~~~~~~v----  686 (857)
                      .+...|.+..-++.--|.-.....          .+.....+..-...-....+..+...+.+|++|.....+.+.    
T Consensus        82 ~~~~~g~~v~li~~D~~R~~a~~ql~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~~~~~~~  161 (260)
T c2cnwF_          82 YYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLME  161 (260)
T ss_dssp             HHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTSCHHHHHHHHHHHHHHTTCSEEEECCCCCCTTCHHHHH
T ss_pred             HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf             99966994899982798777999999999872984896388589899999999999867998999947889868878999


Q ss_pred             -HHHHHHHHHCCEEECCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf             -99999996237056158832045676999823886156554
Q batch____       687 -FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE  727 (857)
Q Consensus       687 -~~~l~~~l~~g~~~d~~g~~~~~~~~iii~tsn~~~~~~~~  727 (857)
                       +..+.+.+       ..-.......+++++.++.+.+.+..
T Consensus       162 el~~l~~~~-------~~~~~~~p~~~~LVlsAt~~~~~~~~  196 (260)
T c2cnwF_         162 ELKKVKRAI-------AKADPEEPKEVWLVLDAVTGQNGLEQ  196 (260)
T ss_dssp             HHHHHHHHH-------HHHCTTCCCEEEEEEETTCCTHHHHH
T ss_pred             HHHHHHHHH-------HHCCCCCCCEEEEEEECCCCHHHHHH
T ss_conf             999999986-------31235688629999315689899999