28 c1s3sA_ Probab=99.88   E-value=2e-20  Score=149.35  Aligned_columns=206  Identities=20%

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCC----CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHH
Q ss_conf             30478689999999888788614446----56666189985798305899999999973488886588551230441013
Q batch____       568 HRVIGQNEAVDAVSNAIRRSRAGLAD----PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSV  643 (857)
Q Consensus       568 ~~~~~q~~a~~~i~~~~~~~~~~~~~----~~~p~~~~Ll~Gp~G~GKT~la~aLA~~~~~~~~~liri~~se~~~~~~~  643 (857)
                      ..+.|.++++..+.+.+......-..    +..|+.++||+||||||||++++++|..+   +.+++.+++++.     .
T Consensus       182 ~dIgGl~~~k~~l~~~i~~pl~~~~~~~~~g~~~~~~~Ll~Gp~G~GKt~l~~~ia~~~---~~~~~~i~~~~l-----~  253 (436)
T c1s3sA_         182 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI-----M  253 (436)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHCTTHHHHCCCCCCCEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEHHHH-----H
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEEHHHH-----C
T ss_conf             34205499999999999975018898974889987538986799899789999998744---995899730687-----0


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHC-----------CHHHHHHHHHHHHCCEEECCCCCCCCCCCE
Q ss_conf             553046664310011126899996089988999330566-----------989999999996237056158832045676
Q batch____       644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNT  712 (857)
Q Consensus       644 ~~~~g~~~g~~~~~~~~~l~~~~~~~~~~vi~lDei~~~-----------~~~v~~~l~~~l~~g~~~d~~g~~~~~~~~  712 (857)
                      ++++|..     ......+++.++...++||||||||..           ...+.+.++..+++-.         +..++
T Consensus       254 ~~~~g~~-----e~~l~~~f~~a~~~~p~ii~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v  319 (436)
T c1s3sA_         254 SKLAGES-----ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRAHV  319 (436)
T ss_dssp             TSCTTHH-----HHHHHHHHHHHHHTCSEEEEEETGGGTCCCSSSCCCTTHHHHHHHHHHHHHHCC---------GGGCE
T ss_pred             CCCCCHH-----HHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC---------CCCCE
T ss_conf             0100158-----888999999997509948984000032102578874588999999986430222---------46987


Q ss_pred             EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999823886156554201232012357778988750895786--006819983899989999999999999999988449
Q batch____       713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFI--NRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERG  790 (857)
Q Consensus       713 iii~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~  790 (857)
                      +||+|||.                         ...++|.|+  +||+..|+|++++.+++.+|++.++.+         
T Consensus       320 ~vi~tt~~-------------------------~~~l~~~l~r~~rf~~~i~~~~P~~~~R~~Il~~~~~~---------  365 (436)
T c1s3sA_         320 IVMAATNR-------------------------PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---------  365 (436)
T ss_dssp             EEEEEESC-------------------------GGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTT---------
T ss_pred             EEEEECCC-------------------------HHHCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCC---------
T ss_conf             99984489-------------------------58888242042403036667898999999999998438---------


Q ss_pred             CEEEECHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             968998899-9999962699877833799999999999999999
Q batch____       791 YEIHISDEA-LKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI  833 (857)
Q Consensus       791 ~~~~~~~~~-~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~  833 (857)
                        +.+++++ +..|+..  +..|-+++|.+++.+.....+.+.+
T Consensus       366 --~~l~~d~~~~~la~~--t~g~~~~dl~~l~~~a~~~a~~r~~  405 (436)
T c1s3sA_         366 --MKLADDVDLEQVANE--THGHVGADLAALCSEAALQAIRKKM  405 (436)
T ss_dssp             --SEECTTCCHHHHHTT--CCSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             --CCCCCCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             --989886687889987--6899889999999999999999888