39 c1in8A_ Probab=99.82   E-value=2.9e-17  Score=128.96  Aligned_columns=194  Identities=21%

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHC
Q ss_conf             30478689999999888788614446566661899857983058999999999734888865885512304410135530
Q batch____       568 HRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLV  647 (857)
Q Consensus       568 ~~~~~q~~a~~~i~~~~~~~~~~~~~~~~p~~~~Ll~Gp~G~GKT~la~aLA~~~~~~~~~liri~~se~~~~~~~~~~~  647 (857)
                      +.++||+++++.+...+...+..    .++++++||+||||||||++|+++|+.+   +.+++.++.+....        
T Consensus         9 ~d~iG~e~~~~~L~~~i~~~~~~----~~~~~~ill~GppGtGKT~la~~ia~~l---~~~~~~i~~~~~~~--------   73 (298)
T c1in8A_           9 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVK--------   73 (298)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCS--------
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHC----CCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCC--------
T ss_conf             78127099999999999998633----8888857998698898889999999970---99799994155332--------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf             46664310011126899996089988999330566989999999996237056158832045676999823886156554
Q batch____       648 GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE  727 (857)
Q Consensus       648 g~~~g~~~~~~~~~l~~~~~~~~~~vi~lDei~~~~~~v~~~l~~~l~~g~~~d~~g~~~~~~~~iii~tsn~~~~~~~~  727 (857)
                                .............++++++||++.++...++.|+..++++...       ....+++..+.+...     
T Consensus        74 ----------~~~~~~~~~~~~~~~il~~dei~~l~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~~~~-----  131 (298)
T c1in8A_          74 ----------QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID-------IQPFTLVGATVRSGL-----  131 (298)
T ss_dssp             ----------HHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHHSCCC-------CCCCEEEEEESCGGG-----
T ss_pred             ----------CHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCC-------CCEEEECCCCCCHHH-----
T ss_conf             ----------0124566885137998999423676989999999997055334-------440665265458563-----


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf             20123201235777898875089578600681998389998999999999999999998844996899889999999626
Q batch____       728 RFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENG  807 (857)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  807 (857)
                                           +.+....++..++.+.+++.+++..|++..+.+         ..+.++++++++|++.+
T Consensus       132 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~  181 (298)
T c1in8A_         132 ---------------------LSSPLRSRFGIILELDFYTVKELKEIIKRAASL---------MDVEIEDAAAEMIAKRS  181 (298)
T ss_dssp             ---------------------SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH---------TTCCBCHHHHHHHHHTS
T ss_pred             ---------------------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHC
T ss_conf             ---------------------146433234431136789899999999999998---------29855889999999983


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998778337999999999999999
Q batch____       808 YDPVYGARPLKRAIQQQIENPLAQ  831 (857)
Q Consensus       808 ~~~~~g~r~l~~~i~~~i~~~l~~  831 (857)
                         .+..|.+.++++..+......
T Consensus       182 ---~g~~R~~~~ll~~~~~~~~~~  202 (298)
T c1in8A_         182 ---RGTPRIAIRLTKRVRDMLTVV  202 (298)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHC
T ss_conf             ---999899999999999999852