Phyre 2 Results for P07021

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Email | l.a.kelley@imperial.ac.uk
Description | P07021
Date | Thu Jan 5 11:00:04 GMT 2012
Unique Job ID | ea078c465f12e0ec

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2l26A_
Top template information
PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains
Confidence and coverage
Confidence: | 100.0% | Coverage: | 67%
107 residues ( 67% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | I | K | H | L | V | A | P | L | V | F | T | S | L | I | L | T | G | C | Q | S | P | Q | G | K | F | T | P | E | Q | V | A | A | M | Q | S | Y | G | F | T | E | S | A | G | D | W | S | L | G | L | S | D | A | I | L | F | A | K | N | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Y | K | L | L | P | E | S | Q | Q | Q | I | Q | T | M | A | A | K | L | A | S | T | G | L | T | H | A | R | M | D | G | H | T | D | N | Y | G | E | D | S | Y | N | E | G | L | S | L | K | R | A | N | V | V | A | D | A | W | A | M | G | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160
Sequence |  | Q | I | P | R | S | N | L | T | T | Q | G | L | G | K | K | Y | P | I | A | S | N | K | T | A | Q | G | R | A | E | N | R | R | V | A | V | V | I | T | T | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2l26A_ |

### PDB 2l26 chain A

Region: 50 - 157
Aligned: 107
Modelled: 108
Confidence: 100.0%
Identity: 36%
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains

Phyre2
2 |
| c2kgwA_ |

### PDB 2kgw chain A

Region: 30 - 158
Aligned: 128
Modelled: 129
Confidence: 100.0%
Identity: 31%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis

Phyre2
3 |
| c3td4D_ |

### PDB 3td4 chain D

Region: 41 - 158
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 38%
PDB header:membrane protein,peptide binding protein
Chain: D: PDB Molecule:outer membrane protein omp38;
PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate

Phyre2
4 |
| d2aizp1 |

### PDB 2aiz chain P domain 1

Region: 19 - 156
Aligned: 133
Modelled: 138
Confidence: 100.0%
Identity: 23%
Fold: Bacillus chorismate mutase-like
Superfamily: OmpA-like
Family: OmpA-like

Phyre2
5 |
| c2k1sA_ |

### PDB 2k1s chain A

Region: 29 - 158
Aligned: 129
Modelled: 130
Confidence: 100.0%
Identity: 32%
PDB header:lipoprotein
Chain: A: PDB Molecule:inner membrane lipoprotein yiad;
PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553.

Phyre2
6 |
| c3khnB_ |

### PDB 3khn chain B

Region: 39 - 158
Aligned: 119
Modelled: 120
Confidence: 100.0%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:motb protein, putative;
PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris.

Phyre2
7 |
| d2hqsc1 |

### PDB 2hqs chain C domain 1

Region: 51 - 156
Aligned: 105
Modelled: 106
Confidence: 100.0%
Identity: 24%
Fold: Bacillus chorismate mutase-like
Superfamily: OmpA-like
Family: OmpA-like

Phyre2
8 |
| c1r1mA_ |

### PDB 1r1m chain A

Region: 45 - 159
Aligned: 114
Modelled: 115
Confidence: 100.0%
Identity: 36%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein class 4;
PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis

Phyre2
9 |
| d1r1ma_ |

### PDB 1r1m chain A

Region: 45 - 159
Aligned: 114
Modelled: 115
Confidence: 100.0%
Identity: 36%
Fold: Bacillus chorismate mutase-like
Superfamily: OmpA-like
Family: OmpA-like

Phyre2
10 |
| c3cyqM_ |

### PDB 3cyq chain M

Region: 52 - 160
Aligned: 108
Modelled: 109
Confidence: 100.0%
Identity: 22%
PDB header:membrane protein
Chain: M: PDB Molecule:chemotaxis protein motb;
PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid

Phyre2
11 |
| c2zvyB_ |

### PDB 2zvy chain B

Region: 39 - 158
Aligned: 117
Modelled: 120
Confidence: 100.0%
Identity: 19%
PDB header:membrane protein
Chain: B: PDB Molecule:chemotaxis protein motb;
PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii)

Phyre2
12 |
| c3ldtA_ |

### PDB 3ldt chain A

Region: 39 - 159
Aligned: 117
Modelled: 121
Confidence: 100.0%
Identity: 21%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein, ompa family protein;
PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila

Phyre2
13 |
| c3oonA_ |

### PDB 3oon chain A

Region: 36 - 158
Aligned: 112
Modelled: 123
Confidence: 99.9%
Identity: 25%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein (tpn50);
PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31

Phyre2
14 |
| c2zovA_ |

### PDB 2zov chain A

Region: 39 - 160
Aligned: 110
Modelled: 121
Confidence: 99.9%
Identity: 23%
PDB header:membrane protein
Chain: A: PDB Molecule:chemotaxis protein motb;
PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i)

Phyre2
15 |
| c2zf8A_ |

### PDB 2zf8 chain A

Region: 53 - 134
Aligned: 74
Modelled: 81
Confidence: 99.8%
Identity: 18%
PDB header:structural protein
Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor;
PDBTitle: crystal structure of moty

Phyre2
16 |
| d1tiba_ |

### PDB 1tib chain A

Region: 68 - 134
Aligned: 52
Modelled: 67
Confidence: 56.0%
Identity: 17%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Fungal lipases

Phyre2
17 |
| d1tiaa_ |

### PDB 1tia chain A

Region: 67 - 134
Aligned: 54
Modelled: 68
Confidence: 49.5%
Identity: 19%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Fungal lipases

Phyre2
18 |
| c3ngmB_ |

### PDB 3ngm chain B

Region: 67 - 134
Aligned: 53
Modelled: 68
Confidence: 45.5%
Identity: 23%
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of lipase from gibberella zeae

Phyre2
19 |
| c3o0dF_ |

### PDB 3o0d chain F

Region: 67 - 134
Aligned: 53
Modelled: 68
Confidence: 41.7%
Identity: 17%
PDB header:hydrolase
Chain: F: PDB Molecule:triacylglycerol lipase;
PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution

Phyre2
20 |
| d1uwca_ |

### PDB 1uwc chain A

Region: 68 - 134
Aligned: 52
Modelled: 67
Confidence: 31.8%
Identity: 17%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Fungal lipases

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2l26A_ |
|  | 100.0 | 36 | PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains
2 | c2kgwA_ |
|  | 100.0 | 31 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis
3 | c3td4D_ |
|  | 100.0 | 38 | PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate
4 | d2aizp1 |
|  | 100.0 | 23 | Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like
5 | c2k1sA_ |
|  | 100.0 | 32 | PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553.
6 | c3khnB_ |
|  | 100.0 | 26 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris.
7 | d2hqsc1 |
|  | 100.0 | 24 | Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like
8 | c1r1mA_ |
|  | 100.0 | 36 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis
9 | d1r1ma_ |
|  | 100.0 | 36 | Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like
10 | c3cyqM_ |
|  | 100.0 | 22 | PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid
11 | c2zvyB_ |
|  | 100.0 | 19 | PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii)
12 | c3ldtA_ |
|  | 100.0 | 21 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila
13 | c3oonA_ |
|  | 99.9 | 25 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31
14 | c2zovA_ |
|  | 99.9 | 23 | PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i)
15 | c2zf8A_ |
|  | 99.8 | 18 | PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty
16 | d1tiba_ |
|  | 56.0 | 17 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
17 | d1tiaa_ |
|  | 49.5 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
18 | c3ngmB_ |
|  | 45.5 | 23 | PDB header:hydrolase Chain: B: PDB Molecule:extracellular lipase; PDBTitle: crystal structure of lipase from gibberella zeae
19 | c3o0dF_ |
|  | 41.7 | 17 | PDB header:hydrolase Chain: F: PDB Molecule:triacylglycerol lipase; PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution
20 | d1uwca_ |
|  | 31.8 | 17 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
21 | c3g7nA_ |
| not modelled | 31.0 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of a triacylglycerol lipase from2 penicillium expansum at 1.3
22 | d1qy7a_ |
| not modelled | 29.3 | 11 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein
23 | c3ds8A_ |
| not modelled | 24.8 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua
24 | d1uzhc1 |
| not modelled | 24.2 | 12 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
25 | d1rbli_ |
| not modelled | 23.9 | 19 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
26 | c1ir6A_ |
| not modelled | 22.3 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese
27 | d1ir6a_ |
| not modelled | 22.3 | 17 | Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ
28 | c2rd5D_ |
| not modelled | 22.2 | 17 | PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana
29 | d1svdm1 |
| not modelled | 22.0 | 4 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
30 | c2r6hC_ |
| not modelled | 19.4 | 33 | PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis
31 | d8ruci_ |
| not modelled | 18.9 | 12 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
32 | c2oghA_ |
| not modelled | 18.3 | 13 | PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1
33 | d1ej7s_ |
| not modelled | 18.3 | 12 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
34 | d3tgla_ |
| not modelled | 17.7 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
35 | d1ir1s_ |
| not modelled | 17.1 | 12 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
36 | d2if1a_ |
| not modelled | 17.0 | 13 | Fold:eIF1-like Superfamily:eIF1-like Family:eIF1-like
37 | d1wdds_ |
| not modelled | 16.8 | 12 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
38 | d1bwvs_ |
| not modelled | 16.6 | 9 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
39 | d1lgya_ |
| not modelled | 16.0 | 16 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
40 | d2v6ai1 |
| not modelled | 14.7 | 12 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
41 | d1bxni_ |
| not modelled | 12.7 | 3 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
42 | d1sxra_ |
| not modelled | 12.7 | 11 | Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like
43 | c1nauA_ |
| not modelled | 12.7 | 18 | PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles
44 | d2ckca1 |
| not modelled | 11.7 | 10 | Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like
45 | c2ckcA_ |
| not modelled | 11.7 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
46 | d1gvha3 |
| not modelled | 11.1 | 15 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain
47 | d1gk8i_ |
| not modelled | 11.0 | 10 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
48 | d2piia_ |
| not modelled | 10.7 | 17 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein
49 | d1uzdc1 |
| not modelled | 10.3 | 10 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
50 | c1s2jA_ |
| not modelled | 10.2 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa; PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa
51 | d1d4oa_ |
| not modelled | 9.8 | 19 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII)
52 | d2v0ea1 |
| not modelled | 8.9 | 8 | Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like
53 | c1pt9B_ |
| not modelled | 8.9 | 19 | PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
54 | d1tvca2 |
| not modelled | 8.3 | 11 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like
55 | c3b9eA_ |
| not modelled | 8.1 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:chitinase a; PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
56 | c3bzqA_ |
| not modelled | 7.2 | 15 | PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis
57 | c3rxyA_ |
| not modelled | 6.9 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nif3 protein; PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus
58 | d2gova1 |
| not modelled | 6.6 | 10 | Fold:Probable bacterial effector-binding domain Superfamily:Probable bacterial effector-binding domain Family:SOUL heme-binding protein
59 | c1gvhA_ |
| not modelled | 6.6 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket
60 | c3devB_ |
| not modelled | 6.5 | 4 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:sh1221; PDBTitle: crystal structure of sh1221 protein from staphylococcus haemolyticus,2 northeast structural genomics consortium target shr87
61 | c3mhyC_ |
| not modelled | 6.2 | 13 | PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure
62 | c2ckaA_ |
| not modelled | 6.0 | 8 | PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
63 | d2ckaa1 |
| not modelled | 6.0 | 8 | Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like
64 | d1zpda1 |
| not modelled | 6.0 | 13 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
65 | d1e32a3 |
| not modelled | 5.8 | 19 | Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like
66 | c3dmaA_ |
| not modelled | 5.7 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:exopolyphosphatase-related protein; PDBTitle: crystal structure of an exopolyphosphatase-related protein2 from bacteroides fragilis. northeast structural genomics3 target bfr192
67 | d1cqxa3 |
| not modelled | 5.7 | 17 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0