BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (108 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AAU6 Uncharacterized protein ybfB n=14 Tax=cellular o... 208 4e-53 UniRef50_B5NJU8 Putative uncharacterized protein n=2 Tax=Salmone... 56 3e-07 UniRef50_D2TSE4 Putative membrane protein n=1 Tax=Citrobacter ro... 44 0.002 >UniRef50_P0AAU6 Uncharacterized protein ybfB n=14 Tax=cellular organisms RepID=YBFB_ECO57 Length = 108 Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFI 60 MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFI Sbjct: 1 MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFI 60 Query: 61 ALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK 108 ALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK Sbjct: 61 ALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK 108 >UniRef50_B5NJU8 Putative uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5NJU8_SALET Length = 70 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 45 YGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKR 104 YGM++I FPTGI+F I L I I S+Y++ ++IW +FL GGY+QWF L + Sbjct: 2 YGMVIISFPTGIIFAIVLFLFLLSFGFIFTTIHSEYVLTVVIWGWFLFGGYVQWFCLVGK 61 Query: 105 IINK 108 +I Sbjct: 62 MIKN 65 >UniRef50_D2TSE4 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TSE4_CITRO Length = 124 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 8/94 (8%) Query: 12 WLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIV----FFIALIFIGT 67 WL++ ++L ++ L R S++ + Y M ++ FP+GI+ FI F + Sbjct: 17 WLSMVTVVLIITL----LFFDGRKNSDIEDFLVYSMFLLTFPSGIIISGLMFIIFYFFMS 72 Query: 68 VSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVL 101 V I + D Y+ I++W + GYIQWF L Sbjct: 73 VFSIEDIMYDVNYVYLILVWFFLFIPGYIQWFFL 106 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AAU6 Uncharacterized protein ybfB n=14 Tax=cellular o... 88 8e-17 UniRef50_D2TSE4 Putative membrane protein n=1 Tax=Citrobacter ro... 65 1e-09 UniRef50_B5NJU8 Putative uncharacterized protein n=2 Tax=Salmone... 55 8e-07 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AAU6 Uncharacterized protein ybfB n=14 Tax=cellular organisms RepID=YBFB_ECO57 Length = 108 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFI 60 MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFI Sbjct: 1 MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFI 60 Query: 61 ALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK 108 ALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK Sbjct: 61 ALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK 108 >UniRef50_D2TSE4 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TSE4_CITRO Length = 124 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 2 KYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIV---- 57 K +I + WL++ ++L ++ L R S++ + Y M ++ FP+GI+ Sbjct: 7 KLLINTLKFSWLSMVTVVLIITL----LFFDGRKNSDIEDFLVYSMFLLTFPSGIIISGL 62 Query: 58 FFIALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLS 102 FI F +V I + D Y+ I++W + GYIQWF L Sbjct: 63 MFIIFYFFMSVFSIEDIMYDVNYVYLILVWFFLFIPGYIQWFFLI 107 >UniRef50_B5NJU8 Putative uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5NJU8_SALET Length = 70 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 45 YGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKR 104 YGM++I FPTGI+F I L I I S+Y++ ++IW +FL GGY+QWF L + Sbjct: 2 YGMVIISFPTGIIFAIVLFLFLLSFGFIFTTIHSEYVLTVVIWGWFLFGGYVQWFCLVGK 61 Query: 105 IINK 108 +I Sbjct: 62 MIKN 65 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.339 0.150 0.468 Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 450,798,504 Number of Sequences: 3077464 Number of extensions: 17162837 Number of successful extensions: 149758 Number of sequences better than 1.0e-01: 62 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 55 Number of HSP's that attempted gapping in prelim test: 149523 Number of HSP's gapped (non-prelim): 215 length of query: 108 length of database: 1,040,396,356 effective HSP length: 76 effective length of query: 32 effective length of database: 806,509,092 effective search space: 25808290944 effective search space used: 25808290944 T: 11 A: 40 X1: 16 ( 7.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 87 (37.9 bits)