Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	I	S	F	T	R	V	A	L	L	A	A	A	L	F	F	V	G	C	D	Q	K	P	Q	P	A	K	T	H	A	T	E	V	T	V	L	E	G	K	T	M	G	T	F	W	R	A	S	I	P	G	I	D	A	K	R	S	A	E
Secondary structure
SS confidence
Disorder		?	?	?	?																?		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	K	E	K	I	Q	T	Q	L	D	A	D	D	Q	L	L	S	T	Y	K	K	D	S	A	L	M	R	F	N	D	S	Q	S	L	S	P	W	P	V	S	E	A	M	A	D	I	V	T	T	S	L	R	I	G	A	K	T	D	G	A
Secondary structure
SS confidence
Disorder																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	D	I	T	V	G	P	L	V	N	L	W	G	F	G	P	E	Q	Q	P	V	Q	I	P	S	Q	E	Q	I	D	A	M	K	A	K	T	G	L	Q	H	L	T	V	I	N	Q	S	H	Q	Q	Y	L	Q	K	D	L	P	D	L	Y
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	D	L	S	T	V	G	E	G	Y	A	A	D	H	L	A	R	L	M	E	Q	E	G	I	S	R	Y	L	V	S	V	G	G	A	L	N	S	R	G	M	N	G	E	G	L	P	W	R	V	A	I	Q	K	P	T	D	K	E	N	A
Secondary structure
SS confidence
Disorder																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	Q	A	V	V	D	I	N	G	H	G	I	S	T	S	G	S	Y	R	N	Y	Y	E	L	D	G	K	R	L	S	H	V	I	D	P	Q	T	G	R	P	I	E	H	N	L	V	S	V	T	V	I	A	P	T	A	L	E	A	D	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Sequence		W	D	T	G	L	M	V	L	G	P	E	K	A	K	E	V	V	R	R	E	G	L	A	V	Y	M	I	T	K	E	G	D	S	F	K	T	W	M	S	P	Q	F	K	S	F	L	V	S	E	K	N
Secondary structure
SS confidence
Disorder																																															?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2o18 chain A Region: 32 - 349 Aligned: 307 Modelled: 318 Confidence: 100.0% Identity: 97% PDB header:lipid binding protein Chain: A: PDB Molecule:thiamine biosynthesis lipoprotein apbe; PDBTitle: crystal structure of a thiamine biosynthesis lipoprotein2 apbe, northeast strcutural genomics target er559 Phyre2 PDB 1vrm chain A domain 1 Region: 33 - 348 Aligned: 305 Modelled: 316 Confidence: 100.0% Identity: 26% Fold: T-fold Superfamily: ApbE-like Family: ApbE-like Phyre2 PDB 2o34 chain A domain 1 Region: 189 - 333 Aligned: 122 Modelled: 127 Confidence: 98.5% Identity: 21% Fold: T-fold Superfamily: ApbE-like Family: DVU1097-like Phyre2 PDB 2gpz chain C Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 35.7% Identity: 42% PDB header:hydrolase Chain: C: PDB Molecule:transthyretin-like protein; PDBTitle: transthyretin-like protein from salmonella dublin Phyre2 PDB 3qva chain B Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 30.9% Identity: 42% PDB header:hydrolase Chain: B: PDB Molecule:transthyretin-like protein; PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase Phyre2 PDB 1udx chain A domain 3 Region: 191 - 220 Aligned: 30 Modelled: 30 Confidence: 30.4% Identity: 30% Fold: Obg GTP-binding protein C-terminal domain Superfamily: Obg GTP-binding protein C-terminal domain Family: Obg GTP-binding protein C-terminal domain Phyre2 PDB 1f86 chain A Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 27.9% Identity: 42% Fold: Prealbumin-like Superfamily: Transthyretin (synonym: prealbumin) Family: Transthyretin (synonym: prealbumin) Phyre2 PDB 1kgi chain A Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 27.6% Identity: 37% Fold: Prealbumin-like Superfamily: Transthyretin (synonym: prealbumin) Family: Transthyretin (synonym: prealbumin) Phyre2 PDB 1tfp chain A Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 26.5% Identity: 42% Fold: Prealbumin-like Superfamily: Transthyretin (synonym: prealbumin) Family: Transthyretin (synonym: prealbumin) Phyre2 PDB 2h0e chain A Region: 265 - 290 Aligned: 24 Modelled: 25 Confidence: 26.1% Identity: 33% PDB header:hydrolase Chain: A: PDB Molecule:transthyretin-like protein pucm; PDBTitle: crystal structure of pucm in the absence of substrate Phyre2 PDB 2h1x chain B Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 25.9% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein) Phyre2 PDB 2vo1 chain A domain 1 Region: 183 - 209 Aligned: 27 Modelled: 27 Confidence: 25.0% Identity: 19% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1tta chain A Region: 270 - 290 Aligned: 19 Modelled: 21 Confidence: 21.8% Identity: 42% Fold: Prealbumin-like Superfamily: Transthyretin (synonym: prealbumin) Family: Transthyretin (synonym: prealbumin) Phyre2 PDB 3geh chain A Region: 229 - 299 Aligned: 70 Modelled: 71 Confidence: 20.8% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn Phyre2 PDB 1s1m chain A domain 2 Region: 183 - 209 Aligned: 27 Modelled: 27 Confidence: 20.8% Identity: 33% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1vco chain A domain 2 Region: 183 - 209 Aligned: 27 Modelled: 27 Confidence: 20.3% Identity: 22% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 2xw7 chain A Region: 191 - 215 Aligned: 25 Modelled: 25 Confidence: 17.3% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: structure of mycobacterium smegmatis putative reductase ms0308 Phyre2 PDB 1t95 chain A domain 1 Region: 273 - 282 Aligned: 10 Modelled: 10 Confidence: 16.5% Identity: 50% Fold: RuvA C-terminal domain-like Superfamily: Hypothetical protein AF0491, middle domain Family: Hypothetical protein AF0491, middle domain Phyre2 PDB 2k10 chain A Region: 183 - 202 Aligned: 20 Modelled: 20 Confidence: 16.0% Identity: 30% PDB header:antimicrobial protein Chain: A: PDB Molecule:ranatuerin-2csa; PDBTitle: confirmational analysis of the broad-spectrum antibacterial2 peptide, rantuerin-2csa: identification of a full length3 helix-turn-helix motif Phyre2 PDB 3nva chain B Region: 183 - 209 Aligned: 27 Modelled: 27 Confidence: 14.9% Identity: 30% PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus Phyre2 1 c2o18A_ 2 d1vrma1 3 d2o34a1 4 c2gpzC_ 5 c3qvaB_ 6 d1udxa3 7 d1f86a_ 8 d1kgia_ 9 d1tfpa_ 10 c2h0eA_ 11 c2h1xB_ 12 d2vo1a1 13 d1ttaa_ 14 c3gehA_ 15 d1s1ma2 16 d1vcoa2 17 c2xw7A_ 18 d1t95a1 19 c2k10A_ 20 c3nvaB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2o18A_ 100.0 97 PDB header:lipid binding protein Chain: A: PDB Molecule:thiamine biosynthesis lipoprotein apbe; PDBTitle: crystal structure of a thiamine biosynthesis lipoprotein2 apbe, northeast strcutural genomics target er559 2 d1vrma1 100.0 26 Fold:T-fold Superfamily:ApbE-like Family:ApbE-like 3 d2o34a1 98.5 21 Fold:T-fold Superfamily:ApbE-like Family:DVU1097-like 4 c2gpzC_ 35.7 42 PDB header:hydrolase Chain: C: PDB Molecule:transthyretin-like protein; PDBTitle: transthyretin-like protein from salmonella dublin 5 c3qvaB_ 30.9 42 PDB header:hydrolase Chain: B: PDB Molecule:transthyretin-like protein; PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase 6 d1udxa3 30.4 30 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 7 d1f86a_ 27.9 42 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 8 d1kgia_ 27.6 37 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 9 d1tfpa_ 26.5 42 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 10 c2h0eA_ 26.1 33 PDB header:hydrolase Chain: A: PDB Molecule:transthyretin-like protein pucm; PDBTitle: crystal structure of pucm in the absence of substrate 11 c2h1xB_ 25.9 26 PDB header:hydrolase Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein) 12 d2vo1a1 25.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 13 d1ttaa_ 21.8 42 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 14 c3gehA_ 20.8 14 PDB header:hydrolase Chain: A: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn 15 d1s1ma2 20.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 16 d1vcoa2 20.3 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 17 c2xw7A_ 17.3 24 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: structure of mycobacterium smegmatis putative reductase ms0308 18 d1t95a1 16.5 50 Fold:RuvA C-terminal domain-like Superfamily:Hypothetical protein AF0491, middle domain Family:Hypothetical protein AF0491, middle domain 19 c2k10A_ 16.0 30 PDB header:antimicrobial protein Chain: A: PDB Molecule:ranatuerin-2csa; PDBTitle: confirmational analysis of the broad-spectrum antibacterial2 peptide, rantuerin-2csa: identification of a full length3 helix-turn-helix motif 20 c3nvaB_ 14.9 30 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 21 c2o7pA_ not modelled 14.4 21 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain 22 c2ad5B_ not modelled 14.3 33 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 23 d2azna1 not modelled 14.2 29 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:RibD C-terminal domain-like 24 c3l51B_ not modelled 14.0 15 PDB header:cell cycle Chain: B: PDB Molecule:structural maintenance of chromosomes protein 4; PDBTitle: crystal structure of the mouse condensin hinge domain 25 c1vcnA_ not modelled 13.9 22 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 26 c2d5nB_ not modelled 13.7 25 PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis 27 d2gxfa1 not modelled 13.6 19 Fold:Cystatin-like Superfamily:NTF2-like Family:YybH-like 28 d1gxja_ not modelled 13.3 15 Fold:Smc hinge domain Superfamily:Smc hinge domain Family:Smc hinge domain 29 c2jppB_ not modelled 13.3 21 PDB header:translation/rna Chain: B: PDB Molecule:translational repressor; PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna 30 d1v97a5 not modelled 13.2 18 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 31 c1vraA_ not modelled 12.4 15 PDB header:transferase Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution 32 d1cm3a_ not modelled 12.3 31 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 33 d2cyga1 not modelled 12.2 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 34 d2afhe1 not modelled 11.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 35 d1ffvb2 not modelled 11.0 15 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 36 d1g3qa_ not modelled 10.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 37 c2hxvA_ not modelled 10.5 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5- PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution 38 c2an1D_ not modelled 10.4 30 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 39 c1vpzB_ not modelled 10.1 18 PDB header:rna binding protein Chain: B: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 40 d1vpza_ not modelled 10.0 18 Fold:CsrA-like Superfamily:CsrA-like Family:CsrA-like 41 d2di9a1 not modelled 9.7 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 42 c3mwdA_ not modelled 9.7 11 PDB header:transferase Chain: A: PDB Molecule:atp-citrate synthase; PDBTitle: truncated human atp-citrate lyase with citrate bound 43 d2b3za1 not modelled 9.7 25 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:RibD C-terminal domain-like 44 c3l51A_ not modelled 9.4 20 PDB header:cell cycle Chain: A: PDB Molecule:structural maintenance of chromosomes protein 2; PDBTitle: crystal structure of the mouse condensin hinge domain 45 c2qwuB_ not modelled 9.4 14 PDB header:cell invasion Chain: B: PDB Molecule:intracellular growth locus, subunit c; PDBTitle: crystal structure of f. tularensis pathogenicity island2 protein c 46 c2bekB_ not modelled 9.4 29 PDB header:chromosome segregation Chain: B: PDB Molecule:segregation protein; PDBTitle: structure of the bacterial chromosome segregation protein2 soj 47 d1a9xa3 not modelled 9.4 19 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 48 c2p4gA_ not modelled 9.3 5 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a pyrimidine reductase-like protein (dip1392)2 from corynebacterium diphtheriae nctc at 2.30 a resolution 49 d1n62b2 not modelled 8.8 16 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 50 c2kdoA_ not modelled 8.8 40 PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds 51 c2vy8A_ not modelled 8.6 25 PDB header:transcription Chain: A: PDB Molecule:polymerase basic protein 2; PDBTitle: the 627-domain from influenza a virus polymerase pb22 subunit with glu-627 52 c1t95A_ not modelled 8.5 50 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein af0491; PDBTitle: crystal structure of the shwachman-bodian-diamond syndrome2 protein orthologue from archaeoglobus fulgidus 53 d1aq0a_ not modelled 8.4 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 54 d1zxoa1 not modelled 8.2 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 55 d1zbsa2 not modelled 7.9 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 56 d1oo2a_ not modelled 7.8 16 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 57 c2panF_ not modelled 7.7 26 PDB header:lyase Chain: F: PDB Molecule:glyoxylate carboligase; PDBTitle: crystal structure of e. coli glyoxylate carboligase 58 c3iswA_ not modelled 7.6 14 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr 59 d1cp2a_ not modelled 7.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 60 d1g5ha2 not modelled 7.3 8 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 61 d1ghsa_ not modelled 7.3 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 62 c3htnA_ not modelled 7.3 14 PDB header:metal binding protein Chain: A: PDB Molecule:putative dna binding protein; PDBTitle: crystal structure of a putative dna binding protein (bt_1116) from2 bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution 63 d1i78a_ not modelled 7.3 11 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 64 c2ojlB_ not modelled 7.3 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 65 c3endA_ not modelled 7.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein 66 c3f55A_ not modelled 7.1 10 PDB header:hydrolase, allergen Chain: A: PDB Molecule:beta-1,3-glucanase; PDBTitle: crystal structure of the native endo beta-1,3-glucanase (hev b 2), a2 major allergen from hevea brasiliensis (space group p41) 67 c2obkE_ not modelled 7.1 21 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain; PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6. 68 d1g2914 not modelled 7.0 44 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 69 d1dvka_ not modelled 7.0 9 Fold:Functional domain of the splicing factor Prp18 Superfamily:Functional domain of the splicing factor Prp18 Family:Functional domain of the splicing factor Prp18 70 c2rc9A_ not modelled 7.0 25 PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution 71 d1ttea1 not modelled 6.9 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 72 c2wd5A_ not modelled 6.9 15 PDB header:cell cycle Chain: A: PDB Molecule:structural maintenance of chromosomes protein 1a; PDBTitle: smc hinge heterodimer (mouse) 73 d3e9la1 not modelled 6.9 38 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Prp8 beta-finger domain-like 74 c2f7fA_ not modelled 6.8 11 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative; PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium 75 c2p0gB_ not modelled 6.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 76 c3dexA_ not modelled 6.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 77 d2dcfa1 not modelled 6.7 3 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 78 c2jtqA_ not modelled 6.7 17 PDB header:transferase Chain: A: PDB Molecule:phage shock protein e; PDBTitle: rhodanese from e.coli 79 c2fs1A_ not modelled 6.7 24 PDB header:protein binding Chain: A: PDB Molecule:psd-1; PDBTitle: solution structure of psd-1 80 d3e9oa1 not modelled 6.7 38 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Prp8 beta-finger domain-like 81 c1t3oA_ not modelled 6.7 18 PDB header:rna binding protein Chain: A: PDB Molecule:carbon storage regulator; PDBTitle: solution structure of csra, a bacterial carbon storage2 regulatory protein 82 c3e66B_ not modelled 6.5 38 PDB header:splicing Chain: B: PDB Molecule:prp8; PDBTitle: crystal structure of the beta-finger domain of yeast prp8 83 d2i14a1 not modelled 6.5 13 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 84 d1g8fa3 not modelled 6.4 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 85 d1tifa_ not modelled 6.3 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 86 d1p42a1 not modelled 6.2 18 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 87 c3kjgB_ not modelled 6.1 25 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory PDBTitle: adp-bound state of cooc1 88 d3enba1 not modelled 6.1 38 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Prp8 beta-finger domain-like 89 c3jtwB_ not modelled 6.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrofolate reductase; PDBTitle: crystal structure of putative dihydrofolate reductase (yp_805003.1)2 from pediococcus pentosaceus atcc 25745 at 1.90 a resolution 90 c2jyaA_ not modelled 6.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 91 d2isba1 not modelled 6.0 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:FumA C-terminal domain-like Family:FumA C-terminal domain-like 92 c3fg8B_ not modelled 5.9 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rha05790; PDBTitle: crystal structure of pas domain of rha05790 93 d1t3qb2 not modelled 5.9 11 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 94 c2lc2A_ not modelled 5.8 14 PDB header:protein binding Chain: A: PDB Molecule:avr3a4; PDBTitle: solution structure of the rxlr effector p. capsici avr3a4 95 c2nqcA_ not modelled 5.8 23 PDB header:immune system Chain: A: PDB Molecule:filamin-c; PDBTitle: crystal structure of ig-like domain 23 from human filamin c 96 d2nqca1 not modelled 5.8 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 97 d1a9xa4 not modelled 5.7 19 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 98 d2fa8a1 not modelled 5.7 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 99 c3kgyA_ not modelled 5.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:bifunctional deaminase-reductase domain protein; PDBTitle: crystal structure of putative dihydrofolate reductase (yp_001636057.1)2 from chloroflexus aurantiacus j-10-fl at 1.50 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0