BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (153 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AEV5 Formate hydrogenlyase regulatory protein hycA n=... 235 4e-61 UniRef50_C9Y2U3 Formate hydrogenlyase regulatory protein hycA n=... 226 2e-58 UniRef50_C5B8Z8 Putative uncharacterized protein n=2 Tax=Edwards... 206 1e-52 UniRef50_C4UKF6 Transcriptional repressor n=2 Tax=Enterobacteria... 201 7e-51 UniRef50_A8GEJ5 Transcriptional repressor n=1 Tax=Serratia prote... 197 6e-50 >UniRef50_P0AEV5 Formate hydrogenlyase regulatory protein hycA n=106 Tax=Enterobacteriaceae RepID=HYCA_ECO57 Length = 153 Score = 235 bits (599), Expect = 4e-61, Method: Composition-based stats. Identities = 153/153 (100%), Positives = 153/153 (100%) Query: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE Sbjct: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 Query: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL 120 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL Sbjct: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL 120 Query: 121 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA 153 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA Sbjct: 121 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA 153 >UniRef50_C9Y2U3 Formate hydrogenlyase regulatory protein hycA n=2 Tax=Cronobacter RepID=C9Y2U3_CROTZ Length = 154 Score = 226 bits (576), Expect = 2e-58, Method: Composition-based stats. Identities = 75/153 (49%), Positives = 110/153 (71%) Query: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 M + E+S+KA++IA RHR LQ WH YCN+LVQ ITLS+ +LHH++ C P LCF LFE Sbjct: 1 MILSELSQKAEFIADRHRALQTHWHTYCNTLVQAITLSRQKLHHSLGCEPQNGLCFFLFE 60 Query: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL 120 HF I V A+GF+ TI Y + +DG ++ +A AQL GM+DG V+IRDRE+VL HYL Sbjct: 61 HFAIRVEQAEGFHCRTINYLIARRDGSEETLLATAQLDAKGMLDGAVDIRDRERVLAHYL 120 Query: 121 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA 153 +KI +YD LY A++++ P+++S+++ + ++ Sbjct: 121 DKIGALYDGLYDAVQHDTPLHISEILAARDASS 153 >UniRef50_C5B8Z8 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5B8Z8_EDWI9 Length = 156 Score = 206 bits (525), Expect = 1e-52, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 91/143 (63%), Gaps = 2/143 (1%) Query: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 M + E++EK+ +I ++ +L QW Y +SL++ T S+ ++ H SC + F +F+ Sbjct: 1 MKVSELTEKSLFIHNKNEKLMAQWATYKSSLIKATTSSRLKIFHEFSCGDGDSVNFTVFD 60 Query: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQ--RIAQAQLSIDGMIDGKVNIRDREQVLEH 118 HF + + LA F S TI+Y + G++ + + +A +G++DG+V+ RDR+ VLEH Sbjct: 61 HFMVEIRLAGEFYSKTIQYGLRLSGGDEDRFVELGRATFDDEGILDGRVSNRDRDGVLEH 120 Query: 119 YLEKIAGVYDSLYTAIENNVPVN 141 YLEKI +YD+LY A++++ P++ Sbjct: 121 YLEKIQSLYDTLYHAMQDSRPLH 143 >UniRef50_C4UKF6 Transcriptional repressor n=2 Tax=Enterobacteriaceae RepID=C4UKF6_YERRU Length = 161 Score = 201 bits (511), Expect = 7e-51, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 89/150 (59%), Gaps = 5/150 (3%) Query: 2 TIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFEH 61 T+ E+S KADYIA R+ +L+ QW Y NSL Q IT SK ++H + C + + F LF H Sbjct: 5 TLSELSSKADYIASRNNQLRTQWRTYENSLTQAITQSKNNINHEVRCGESQGISFTLFSH 64 Query: 62 FRIYVTLADGFNSHTIEYYVE---TKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEH 118 F I + L D F SH I Y + + D D + A A L+ +G++DG V+IRD+ V EH Sbjct: 65 FAINIHLCDDFYSHDIVYSLNLSPSSDQPDFKAFAHAHLTEEGLVDGSVDIRDKNAVFEH 124 Query: 119 YLEKIAGVYDSLYTAIENNVPV--NLSQLV 146 YL KI +Y L+ ++ +N V L QL+ Sbjct: 125 YLNKIFVIYQCLFDSLRDNKSVYRQLKQLI 154 >UniRef50_A8GEJ5 Transcriptional repressor n=1 Tax=Serratia proteamaculans 568 RepID=A8GEJ5_SERP5 Length = 155 Score = 197 bits (502), Expect = 6e-50, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 3/143 (2%) Query: 2 TIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFEH 61 TI E++ +ADYIA + RL QW Y ++LV+ +T +K +++H + + +L FVLF H Sbjct: 3 TISEVTSQADYIANKSNRLMAQWQTYHSTLVKAVTTTKKKINHQFTYGQENDLRFVLFNH 62 Query: 62 FRIYVTLADGFNSHTIEYYVE---TKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEH 118 F + + L++GF S I Y + + E+ A A L +G ID +N RD + V EH Sbjct: 63 FTVSIQLSEGFYSRDICYRINLATAHEPENFAPFAHATLDENGNIDEVINNRDMQAVFEH 122 Query: 119 YLEKIAGVYDSLYTAIENNVPVN 141 YL+KIA +Y L+ ++ + + Sbjct: 123 YLDKIAVIYQCLFDSLHDGHAIQ 145 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEV5 Formate hydrogenlyase regulatory protein hycA n=... 233 1e-60 UniRef50_C9Y2U3 Formate hydrogenlyase regulatory protein hycA n=... 224 7e-58 UniRef50_C5B8Z8 Putative uncharacterized protein n=2 Tax=Edwards... 205 4e-52 UniRef50_A8GEJ5 Transcriptional repressor n=1 Tax=Serratia prote... 202 4e-51 UniRef50_C4UKF6 Transcriptional repressor n=2 Tax=Enterobacteria... 201 9e-51 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AEV5 Formate hydrogenlyase regulatory protein hycA n=106 Tax=Enterobacteriaceae RepID=HYCA_ECO57 Length = 153 Score = 233 bits (595), Expect = 1e-60, Method: Composition-based stats. Identities = 153/153 (100%), Positives = 153/153 (100%) Query: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE Sbjct: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 Query: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL 120 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL Sbjct: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL 120 Query: 121 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA 153 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA Sbjct: 121 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA 153 >UniRef50_C9Y2U3 Formate hydrogenlyase regulatory protein hycA n=2 Tax=Cronobacter RepID=C9Y2U3_CROTZ Length = 154 Score = 224 bits (571), Expect = 7e-58, Method: Composition-based stats. Identities = 75/153 (49%), Positives = 110/153 (71%) Query: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 M + E+S+KA++IA RHR LQ WH YCN+LVQ ITLS+ +LHH++ C P LCF LFE Sbjct: 1 MILSELSQKAEFIADRHRALQTHWHTYCNTLVQAITLSRQKLHHSLGCEPQNGLCFFLFE 60 Query: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL 120 HF I V A+GF+ TI Y + +DG ++ +A AQL GM+DG V+IRDRE+VL HYL Sbjct: 61 HFAIRVEQAEGFHCRTINYLIARRDGSEETLLATAQLDAKGMLDGAVDIRDRERVLAHYL 120 Query: 121 EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA 153 +KI +YD LY A++++ P+++S+++ + ++ Sbjct: 121 DKIGALYDGLYDAVQHDTPLHISEILAARDASS 153 >UniRef50_C5B8Z8 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5B8Z8_EDWI9 Length = 156 Score = 205 bits (521), Expect = 4e-52, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 91/143 (63%), Gaps = 2/143 (1%) Query: 1 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE 60 M + E++EK+ +I ++ +L QW Y +SL++ T S+ ++ H SC + F +F+ Sbjct: 1 MKVSELTEKSLFIHNKNEKLMAQWATYKSSLIKATTSSRLKIFHEFSCGDGDSVNFTVFD 60 Query: 61 HFRIYVTLADGFNSHTIEYYVETKDGEDKQ--RIAQAQLSIDGMIDGKVNIRDREQVLEH 118 HF + + LA F S TI+Y + G++ + + +A +G++DG+V+ RDR+ VLEH Sbjct: 61 HFMVEIRLAGEFYSKTIQYGLRLSGGDEDRFVELGRATFDDEGILDGRVSNRDRDGVLEH 120 Query: 119 YLEKIAGVYDSLYTAIENNVPVN 141 YLEKI +YD+LY A++++ P++ Sbjct: 121 YLEKIQSLYDTLYHAMQDSRPLH 143 >UniRef50_A8GEJ5 Transcriptional repressor n=1 Tax=Serratia proteamaculans 568 RepID=A8GEJ5_SERP5 Length = 155 Score = 202 bits (513), Expect = 4e-51, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 3/143 (2%) Query: 2 TIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFEH 61 TI E++ +ADYIA + RL QW Y ++LV+ +T +K +++H + + +L FVLF H Sbjct: 3 TISEVTSQADYIANKSNRLMAQWQTYHSTLVKAVTTTKKKINHQFTYGQENDLRFVLFNH 62 Query: 62 FRIYVTLADGFNSHTIEYYVE---TKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEH 118 F + + L++GF S I Y + + E+ A A L +G ID +N RD + V EH Sbjct: 63 FTVSIQLSEGFYSRDICYRINLATAHEPENFAPFAHATLDENGNIDEVINNRDMQAVFEH 122 Query: 119 YLEKIAGVYDSLYTAIENNVPVN 141 YL+KIA +Y L+ ++ + + Sbjct: 123 YLDKIAVIYQCLFDSLHDGHAIQ 145 >UniRef50_C4UKF6 Transcriptional repressor n=2 Tax=Enterobacteriaceae RepID=C4UKF6_YERRU Length = 161 Score = 201 bits (510), Expect = 9e-51, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 89/150 (59%), Gaps = 5/150 (3%) Query: 2 TIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFEH 61 T+ E+S KADYIA R+ +L+ QW Y NSL Q IT SK ++H + C + + F LF H Sbjct: 5 TLSELSSKADYIASRNNQLRTQWRTYENSLTQAITQSKNNINHEVRCGESQGISFTLFSH 64 Query: 62 FRIYVTLADGFNSHTIEYYVE---TKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEH 118 F I + L D F SH I Y + + D D + A A L+ +G++DG V+IRD+ V EH Sbjct: 65 FAINIHLCDDFYSHDIVYSLNLSPSSDQPDFKAFAHAHLTEEGLVDGSVDIRDKNAVFEH 124 Query: 119 YLEKIAGVYDSLYTAIENNVPV--NLSQLV 146 YL KI +Y L+ ++ +N V L QL+ Sbjct: 125 YLNKIFVIYQCLFDSLRDNKSVYRQLKQLI 154 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.138 0.362 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 485,275,201 Number of Sequences: 3077464 Number of extensions: 15020839 Number of successful extensions: 45525 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45509 Number of HSP's gapped (non-prelim): 10 length of query: 153 length of database: 1,040,396,356 effective HSP length: 115 effective length of query: 38 effective length of database: 686,487,996 effective search space: 26086543848 effective search space used: 26086543848 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 87 (38.1 bits)