BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (366 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P26464 DNA polymerase III subunit beta n=211 Tax=Gammap... 727 0.0 UniRef50_P22838 DNA polymerase III subunit beta n=29 Tax=Gammapr... 622 e-177 UniRef50_Q1LTW3 DNA polymerase III, beta subunit n=47 Tax=Bacter... 458 e-127 UniRef50_P0A120 DNA polymerase III subunit beta n=15 Tax=Gammapr... 400 e-110 UniRef50_Q9I7C4 DNA polymerase III subunit beta n=77 Tax=Proteob... 393 e-108 UniRef50_B0RLI9 DNA polymerase III beta chain n=34 Tax=Gammaprot... 362 9e-99 UniRef50_A6AHE8 DNA polymerase III, beta subunit (Fragment) n=1 ... 346 6e-94 UniRef50_Q3JF38 DNA polymerase III, beta subunit n=4 Tax=Gammapr... 334 3e-90 UniRef50_Q31JS4 DNA polymerase III, beta subunit n=1 Tax=Thiomic... 330 4e-89 UniRef50_Q7VQU9 DNA polymerase III beta-subunit n=2 Tax=Candidat... 328 2e-88 UniRef50_P57127 DNA polymerase III subunit beta n=34 Tax=Buchner... 325 2e-87 UniRef50_Q602N1 DNA polymerase III, beta subunit n=1 Tax=Methylo... 321 3e-86 UniRef50_A4G155 DNA polymerase III, beta subunit n=14 Tax=Betapr... 317 3e-85 UniRef50_A3M0Q5 DNA polymerase III n=16 Tax=Acinetobacter RepID=... 309 1e-82 UniRef50_Q1GXK0 DNA polymerase III, beta subunit n=2 Tax=Methylo... 298 2e-79 UniRef50_B9ZMT6 DNA polymerase III, beta subunit n=1 Tax=Thioalk... 291 4e-77 UniRef50_A5I9F2 DNA polymerase III beta chain n=6 Tax=Legionella... 285 1e-75 UniRef50_A7C334 DNA polymerase III, beta chain n=1 Tax=Beggiatoa... 285 1e-75 UniRef50_C5V0W8 DNA polymerase III, beta subunit n=1 Tax=Gallion... 284 4e-75 UniRef50_Q89B36 DNA polymerase III subunit beta n=1 Tax=Buchnera... 278 3e-73 UniRef50_Q8D3I6 DnaN protein n=1 Tax=Wigglesworthia glossinidia ... 275 3e-72 UniRef50_C9YCP5 DNA polymerase III subunit beta n=1 Tax=Curvibac... 264 4e-69 UniRef50_C1D6W8 DnaN n=29 Tax=Betaproteobacteria RepID=C1D6W8_LARHH 263 9e-69 UniRef50_Q4FVT2 DNA polymerase III, beta subunit n=5 Tax=Moraxel... 262 2e-68 UniRef50_A0Q3U8 DNA polymerase III, beta subunit n=19 Tax=Franci... 261 2e-68 UniRef50_B1Y548 DNA polymerase III, beta subunit n=92 Tax=Betapr... 260 4e-68 UniRef50_D0KVU1 DNA polymerase III, beta subunit n=1 Tax=Halothi... 259 1e-67 UniRef50_B8GXP6 DNA polymerase III subunit beta n=185 Tax=cellul... 249 8e-65 UniRef50_Q0AK26 DNA polymerase III, beta subunit n=20 Tax=Nitros... 248 2e-64 UniRef50_A0L3I8 DNA polymerase III, beta subunit n=1 Tax=Magneto... 239 1e-61 UniRef50_C8N933 DNA polymerase III, beta subunit n=1 Tax=Cardiob... 235 2e-60 UniRef50_B5EJ65 DNA polymerase III, beta subunit n=3 Tax=Acidith... 232 2e-59 UniRef50_A1AJX3 DNA polymerase III, beta subunit n=10 Tax=Desulf... 225 2e-57 UniRef50_Q0EVY9 DNA polymerase III subunit beta n=1 Tax=Mariprof... 225 2e-57 UniRef50_Q058G0 DNA polymerase III, b subunit n=1 Tax=Buchnera a... 217 4e-55 UniRef50_Q5GSK7 DNA polymerase III beta clamp subunit n=11 Tax=c... 217 7e-55 UniRef50_A5FYG4 DNA polymerase III, beta subunit n=2 Tax=cellula... 215 2e-54 UniRef50_B4UTW9 p081 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW9_B... 214 3e-54 UniRef50_Q1V1G8 DNA polymerase III n=5 Tax=root RepID=Q1V1G8_PELUB 214 4e-54 UniRef50_C6XEX5 DNA polymerase III subunit beta n=1 Tax=Candidat... 213 9e-54 UniRef50_Q1JZF2 DNA polymerase III, beta subunit n=1 Tax=Desulfu... 211 2e-53 UniRef50_B9XEB7 DNA polymerase III, beta subunit n=3 Tax=Verruco... 210 6e-53 UniRef50_Q21QE8 DNA polymerase III, beta subunit n=1 Tax=Rhodofe... 202 1e-50 UniRef50_B5JPS7 DNA polymerase III, beta subunit n=1 Tax=Verruco... 202 2e-50 UniRef50_C1A3G7 DNA polymerase III beta subunit n=1 Tax=Gemmatim... 200 5e-50 UniRef50_Q6MRS0 DNA polymerase III, beta subunit n=1 Tax=Bdellov... 200 7e-50 UniRef50_A7H676 DNA polymerase III, beta subunit n=6 Tax=Cystoba... 198 2e-49 UniRef50_B1ZXL9 DNA polymerase III, beta subunit n=2 Tax=Opituta... 196 1e-48 UniRef50_B2KAM5 DNA polymerase III, beta subunit n=1 Tax=Elusimi... 196 1e-48 UniRef50_C1F9N7 DNA polymerase III, beta subunit n=1 Tax=Acidoba... 194 3e-48 UniRef50_D1N691 DNA polymerase III, beta subunit n=1 Tax=Victiva... 194 6e-48 UniRef50_Q02D48 DNA polymerase III, beta subunit n=2 Tax=Acidoba... 192 2e-47 UniRef50_A9D4N4 DNA polymerase III, beta chain protein n=1 Tax=H... 187 6e-46 UniRef50_Q1RIS7 DNA polymerase III subunit beta n=15 Tax=Rickett... 187 6e-46 UniRef50_D0LFL0 DNA polymerase III, beta subunit n=1 Tax=Haliang... 186 1e-45 UniRef50_A1AV49 DNA polymerase III, beta subunit n=2 Tax=sulfur-... 186 1e-45 UniRef50_A0LLR4 DNA polymerase III, beta subunit n=1 Tax=Syntrop... 184 4e-45 UniRef50_C9KQB1 DNA polymerase III, beta subunit n=2 Tax=Veillon... 183 7e-45 UniRef50_B9KGQ1 DNA polymerase III beta chain (DnaN) n=12 Tax=An... 182 2e-44 UniRef50_A8DJY7 DNA polymerase III beta subunit n=1 Tax=Candidat... 180 7e-44 UniRef50_B2UQB4 DNA polymerase III, beta subunit n=2 Tax=Verruco... 179 2e-43 UniRef50_Q0PQ91 DNA polymerase III beta-subunit DnaC (Fragment) ... 174 3e-42 UniRef50_A5EX08 DNA polymerase III, beta subunit n=1 Tax=Dichelo... 174 5e-42 UniRef50_O84078 DNA polymerase III subunit beta n=14 Tax=Chlamyd... 172 2e-41 UniRef50_B1GZ05 DNA polymerase III beta subunit n=1 Tax=uncultur... 171 4e-41 UniRef50_Q2LYA2 DNA polymerase III, beta chain n=1 Tax=Syntrophu... 171 4e-41 UniRef50_B5YGU0 DNA polymerase III, beta subunit n=1 Tax=Thermod... 169 2e-40 UniRef50_B8FM62 DNA polymerase III, beta subunit n=1 Tax=Desulfa... 166 1e-39 UniRef50_C4V1P5 DNA polymerase III beta chain n=2 Tax=Selenomona... 162 1e-38 UniRef50_Q67TK6 DNA polymerase III beta subunit n=1 Tax=Symbioba... 162 1e-38 UniRef50_D1PRN1 DNA polymerase III, beta subunit n=1 Tax=Subdoli... 162 2e-38 UniRef50_A6G5S7 DNA polymerase III, beta subunit n=1 Tax=Plesioc... 162 2e-38 UniRef50_C4WNF5 DNA polymerase III, beta subunit n=1 Tax=Ochroba... 161 4e-38 UniRef50_D1CG53 DNA polymerase III, beta subunit n=1 Tax=Thermob... 160 5e-38 UniRef50_Q0B0Z3 DNA polymerase III, beta subunit n=1 Tax=Syntrop... 160 9e-38 UniRef50_A5D6E5 DNA polymerase sliding clamp subunit n=2 Tax=Pep... 159 1e-37 UniRef50_Q38ZS3 DNA-directed DNA polymerase III, beta subunit n=... 159 2e-37 UniRef50_B0K0W9 DNA polymerase III, beta subunit n=11 Tax=Thermo... 159 2e-37 UniRef50_Q6MAH0 Putative DNA polymerase III, beta chain n=1 Tax=... 159 2e-37 UniRef50_D1VRK9 DNA polymerase III, beta subunit n=1 Tax=Peptoni... 158 3e-37 UniRef50_A9FMJ3 DNA polymerase III beta subunit n=1 Tax=Sorangiu... 157 5e-37 UniRef50_C0QRL0 DNA polymerase III, beta subunit n=3 Tax=Aquific... 157 6e-37 UniRef50_Q2GAN7 DNA polymerase III beta subunit family protein n... 156 1e-36 UniRef50_D2MK63 DNA polymerase III, beta subunit (Fragment) n=1 ... 155 2e-36 UniRef50_B2V9G3 DNA polymerase III, beta subunit n=2 Tax=Sulfuri... 155 3e-36 UniRef50_B1L1K7 DNA polymerase III, beta subunit n=35 Tax=Clostr... 154 4e-36 UniRef50_Q5HK00 DNA polymerase III subunit beta n=240 Tax=Bacill... 154 4e-36 UniRef50_Q1NPP3 DNA-directed DNA polymerase n=2 Tax=Deltaproteob... 154 7e-36 UniRef50_A7HMB7 DNA polymerase III, beta subunit n=3 Tax=Thermot... 153 1e-35 UniRef50_A6TJ77 DNA polymerase III, beta subunit n=3 Tax=Clostri... 153 1e-35 UniRef50_C8WXS8 DNA polymerase III, beta subunit n=2 Tax=Alicycl... 152 1e-35 UniRef50_A6C2Q1 DNA polymerase III, beta chain n=1 Tax=Planctomy... 152 2e-35 UniRef50_C6V443 DNA polymerase III, beta subunit n=2 Tax=Neorick... 152 2e-35 UniRef50_O67725 DNA polymerase III subunit beta n=2 Tax=Aquifica... 152 2e-35 UniRef50_D2QRF3 DNA polymerase III, beta subunit n=1 Tax=Spiroso... 151 3e-35 UniRef50_B9KC54 DNA polymerase III, beta subunit n=1 Tax=Thermot... 150 8e-35 UniRef50_C9XIB4 DNA polymerase III, beta chain n=6 Tax=Clostridi... 150 9e-35 UniRef50_C9RQU7 DNA polymerase III, beta subunit n=1 Tax=Fibroba... 149 1e-34 UniRef50_B5Y6P1 DNA polymerase III, beta subunit n=1 Tax=Coproth... 149 1e-34 UniRef50_Q11UU6 DNA polymerase III, beta subunit n=13 Tax=Bacter... 149 1e-34 UniRef50_A5FGC6 DNA polymerase III, beta subunit n=12 Tax=Bacter... 149 1e-34 UniRef50_UPI00016C0202 DNA polymerase III subunit beta n=1 Tax=E... 149 2e-34 UniRef50_Q2S6M1 DNA polymerase III, beta subunit n=1 Tax=Salinib... 148 2e-34 UniRef50_D0MJZ8 DNA polymerase III, beta subunit n=1 Tax=Rhodoth... 148 3e-34 UniRef50_B8E2I1 DNA polymerase III, beta subunit n=2 Tax=Dictyog... 148 4e-34 UniRef50_C5JAN5 DNA polymerase III subunit beta n=1 Tax=uncultur... 148 4e-34 UniRef50_A7VRS4 Putative uncharacterized protein n=3 Tax=Bacteri... 147 6e-34 UniRef50_A3DHZ5 DNA polymerase III, beta subunit n=5 Tax=Clostri... 147 7e-34 UniRef50_B2A2Y7 DNA polymerase III, beta subunit n=1 Tax=Natrana... 146 1e-33 UniRef50_B9KZ05 DNA polymerase III, beta subunit n=2 Tax=Thermom... 146 1e-33 UniRef50_C8WIM7 DNA polymerase III, beta subunit n=2 Tax=Corioba... 145 2e-33 UniRef50_Q2RMJ6 DNA polymerase III, beta subunit n=1 Tax=Moorell... 144 5e-33 UniRef50_B0TAK9 DNA polymerase iii, beta subunit n=2 Tax=Helioba... 143 8e-33 UniRef50_C4FYD9 Putative uncharacterized protein n=1 Tax=Catonel... 143 8e-33 UniRef50_A8F4G9 DNA polymerase III, beta subunit n=7 Tax=Thermot... 143 1e-32 UniRef50_UPI0001C311AE DNA polymerase III, beta subunit n=1 Tax=... 143 1e-32 UniRef50_C0QD86 DnaN n=1 Tax=Desulfobacterium autotrophicum HRM2... 143 1e-32 UniRef50_C8XHU9 DNA polymerase III, beta subunit n=2 Tax=Actinom... 142 2e-32 UniRef50_C6I687 DNA polymerase subunit III beta n=20 Tax=Bacteri... 142 2e-32 UniRef50_P52023 DNA polymerase III subunit beta n=13 Tax=cellula... 142 2e-32 UniRef50_Q3Z759 DNA polymerase III, beta subunit n=5 Tax=Dehaloc... 141 3e-32 UniRef50_Q6AQJ6 Probable DNA polymerase III, beta chain n=1 Tax=... 141 4e-32 UniRef50_Q1GC42 DNA polymerase III, beta chain n=4 Tax=Lactobaci... 139 1e-31 UniRef50_C0R0U9 DNA polymerase III beta (Beta clamp) subunit n=2... 139 1e-31 UniRef50_Q1B045 DNA polymerase III, beta subunit n=1 Tax=Rubroba... 137 5e-31 UniRef50_C3RP22 DNA polymerase III subunit beta n=4 Tax=Bacteria... 137 6e-31 UniRef50_C7MLD3 DNA polymerase III, beta subunit n=1 Tax=Cryptob... 137 8e-31 UniRef50_B9K2Q2 DNA polymerase III beta subunit n=1 Tax=Agrobact... 136 9e-31 UniRef50_Q252K1 DNA polymerase III beta chain n=2 Tax=Desulfitob... 136 1e-30 UniRef50_C8W8K5 DNA polymerase III, beta subunit n=5 Tax=Corioba... 136 1e-30 UniRef50_P72856 DNA polymerase III subunit beta n=43 Tax=Cyanoba... 135 2e-30 UniRef50_UPI0000382B81 COG0592: DNA polymerase sliding clamp sub... 135 2e-30 UniRef50_B8HRT6 DNA polymerase III, beta subunit n=2 Tax=Chrooco... 135 2e-30 UniRef50_B3DWG7 DNA polymerase sliding clamp subunit n=1 Tax=Met... 135 2e-30 UniRef50_Q7NGD9 DNA polymerase III beta subunit n=1 Tax=Gloeobac... 135 3e-30 UniRef50_C8VV98 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 134 4e-30 UniRef50_C6X4N3 DNA polymerase III beta subunit n=1 Tax=Flavobac... 134 5e-30 UniRef50_C1ZD41 DNA polymerase III, beta subunit n=1 Tax=Plancto... 134 5e-30 UniRef50_B8CZN5 DNA polymerase III, beta subunit n=1 Tax=Halothe... 134 5e-30 UniRef50_A4V7F9 Putative DNA polymerase subunit n=1 Tax=Pseudomo... 134 6e-30 UniRef50_C7M837 DNA polymerase III, beta subunit n=7 Tax=Bactero... 134 7e-30 UniRef50_B0CDM3 DNA polymerase III, beta subunit n=1 Tax=Acaryoc... 132 1e-29 UniRef50_Q50790 DNA polymerase III subunit beta n=27 Tax=Coryneb... 132 1e-29 UniRef50_B1C8Z4 Putative uncharacterized protein n=1 Tax=Anaerof... 132 2e-29 UniRef50_Q04WF6 DNA-directed DNA polymerase, beta subunit n=7 Ta... 132 3e-29 UniRef50_C8NI23 DNA polymerase III, beta subunit n=1 Tax=Granuli... 131 4e-29 UniRef50_A4XFI2 DNA polymerase III, beta subunit n=1 Tax=Caldice... 131 5e-29 UniRef50_C1TP63 DNA polymerase III, beta subunit n=2 Tax=Synergi... 130 8e-29 UniRef50_B0S417 DNA polymerase III beta subunit n=2 Tax=Finegold... 130 1e-28 UniRef50_B8GBZ8 DNA polymerase III, beta subunit n=5 Tax=Chlorof... 130 1e-28 UniRef50_A5KS03 DNA polymerase III, beta subunit n=6 Tax=candida... 128 4e-28 UniRef50_B9ML38 DNA polymerase III, beta subunit n=1 Tax=Anaeroc... 127 4e-28 UniRef50_C0WAM5 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 127 4e-28 UniRef50_Q1J2H7 DNA polymerase III, beta subunit n=4 Tax=Deinoco... 127 5e-28 UniRef50_B7CCH7 Putative uncharacterized protein n=1 Tax=Eubacte... 127 6e-28 UniRef50_D2R8A9 DNA polymerase III, beta subunit n=3 Tax=Plancto... 127 7e-28 UniRef50_O83048 DNA polymerase III subunit beta n=4 Tax=Treponem... 127 7e-28 UniRef50_B6YRT5 DNA polymerase III beta subunit n=26 Tax=Bactero... 126 1e-27 UniRef50_P27903 DNA polymerase III subunit beta n=29 Tax=Actinom... 126 1e-27 UniRef50_A8RAI6 Putative uncharacterized protein n=1 Tax=Eubacte... 126 1e-27 UniRef50_C3LH37 DNA polymerase III, beta subunit n=48 Tax=Bacill... 125 3e-27 UniRef50_B7K0V0 DNA polymerase III, beta subunit n=13 Tax=Cyanob... 124 4e-27 UniRef50_Q3A8P3 DNA polymerase III, beta subunit n=1 Tax=Carboxy... 124 4e-27 UniRef50_UPI0001C36FC0 DNA polymerase III subunit beta n=1 Tax=R... 124 5e-27 UniRef50_D1BQ78 DNA polymerase III, beta subunit n=3 Tax=Veillon... 124 8e-27 UniRef50_A4T4T7 DNA polymerase III, beta subunit n=20 Tax=Coryne... 123 1e-26 UniRef50_C7N0K1 DNA polymerase III, beta subunit n=1 Tax=Slackia... 123 1e-26 UniRef50_C0EA16 Putative uncharacterized protein n=1 Tax=Clostri... 122 2e-26 UniRef50_A5CBW4 Chromosomal replication initiation protein n=6 T... 122 2e-26 UniRef50_A9KPP2 DNA polymerase III, beta subunit n=36 Tax=Bacter... 122 2e-26 UniRef50_B3QWU6 DNA polymerase III, beta subunit n=1 Tax=Chloroh... 122 2e-26 UniRef50_Q04HR5 DNA polymerase III, beta subunit n=2 Tax=Oenococ... 122 3e-26 UniRef50_C7LJX6 DNA polymerase III, beta subunit n=1 Tax=Candida... 122 3e-26 UniRef50_C0GI72 DNA polymerase III, beta subunit n=1 Tax=Dethiob... 121 4e-26 UniRef50_Q0RUQ2 DNA polymerase III, beta chain n=25 Tax=root Rep... 121 4e-26 UniRef50_Q47TU0 DNA polymerase III beta subunit family protein n... 120 9e-26 UniRef50_B4VWR6 DNA polymerase III, beta subunit n=5 Tax=Cyanoba... 119 1e-25 UniRef50_B8F8V2 DNA polymerase III, beta subunit n=1 Tax=Desulfa... 118 4e-25 UniRef50_C8P210 DNA polymerase III, beta subunit n=2 Tax=Erysipe... 118 4e-25 UniRef50_O54376 DNA polymerase III subunit beta n=76 Tax=Strepto... 117 6e-25 UniRef50_A9B4J2 DNA polymerase III, beta subunit n=1 Tax=Herpeto... 117 6e-25 UniRef50_C7QFL8 DNA polymerase III, beta subunit n=3 Tax=Actinom... 117 7e-25 UniRef50_B7H828 DNA polymerase III, beta subunit n=20 Tax=Bacter... 117 7e-25 UniRef50_B1I1H5 DNA polymerase III, beta subunit n=1 Tax=Candida... 116 1e-24 UniRef50_Q2JU25 DNA polymerase III, beta subunit n=2 Tax=Synecho... 115 2e-24 UniRef50_C4DK83 DNA polymerase III, beta subunit n=1 Tax=Stackeb... 115 2e-24 UniRef50_Q8L2C9 DNA polymerase III beta chain n=2 Tax=Enterobact... 115 4e-24 UniRef50_C2KY13 Possible DNA-directed DNA polymerase n=1 Tax=Ori... 114 6e-24 UniRef50_C8WSN6 DNA polymerase III, beta subunit n=5 Tax=Alicycl... 113 1e-23 UniRef50_B0MXV3 Putative uncharacterized protein n=1 Tax=Alistip... 113 1e-23 UniRef50_B0VFV2 Putative DNA polymerase III, beta chain (DnaN-li... 112 2e-23 UniRef50_D2RMT4 DNA polymerase III, beta subunit n=1 Tax=Acidami... 112 2e-23 UniRef50_C5NVV0 DNA polymerase III, beta subunit n=1 Tax=Gemella... 112 2e-23 UniRef50_Q72H86 DNA polymerase III, beta chain n=6 Tax=Thermacea... 112 2e-23 UniRef50_Q1PVD8 Similar to DNA polymerase III beta subunit n=1 T... 111 5e-23 UniRef50_D2MMX4 DNA polymerase III, beta subunit n=1 Tax=Bulleid... 110 7e-23 UniRef50_D1B7J0 DNA polymerase III, beta subunit n=1 Tax=Therman... 110 9e-23 UniRef50_UPI00016C54E2 DNA polymerase III, beta chain n=1 Tax=Ge... 109 1e-22 UniRef50_B5CVF7 Putative uncharacterized protein n=2 Tax=Bactero... 109 2e-22 UniRef50_P21174 DNA polymerase III subunit beta (Fragment) n=17 ... 109 2e-22 UniRef50_B0MRG5 Putative uncharacterized protein n=1 Tax=Eubacte... 109 2e-22 UniRef50_A8Z6B4 DNA polymerase III, beta subunit n=1 Tax=Candida... 108 3e-22 UniRef50_C7H084 DNA polymerase III, beta subunit n=1 Tax=Eubacte... 108 3e-22 UniRef50_B3ZXM6 DNA polymerase III, beta subunit n=1 Tax=Bacillu... 107 6e-22 UniRef50_Q7VH41 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 107 1e-21 UniRef50_C2D9K3 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 106 1e-21 UniRef50_A1B0N7 DNA polymerase III beta subunit family protein n... 106 1e-21 UniRef50_A6CJV3 DNA polymerase III subunit beta n=2 Tax=Bacillus... 106 1e-21 UniRef50_C7M115 DNA polymerase III, beta subunit n=1 Tax=Acidimi... 105 2e-21 UniRef50_P34029 DNA polymerase III subunit beta n=2 Tax=Spiropla... 105 3e-21 UniRef50_D0WL07 DNA polymerase III, beta subunit n=1 Tax=Actinom... 105 4e-21 UniRef50_C5EYP3 DNA polymerase III n=3 Tax=Helicobacter RepID=C5... 104 4e-21 UniRef50_Q82HZ6 Putative DNA polymerase III beta subunit n=1 Tax... 104 4e-21 UniRef50_A8SK33 Putative uncharacterized protein n=1 Tax=Parvimo... 104 5e-21 UniRef50_A8EQT1 DNA polymerase III, beta subunit n=2 Tax=Campylo... 103 8e-21 UniRef50_A8ZRY7 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 103 9e-21 UniRef50_C3PE73 DNA polymerase III, beta subunit n=12 Tax=Coryne... 100 6e-20 UniRef50_C1SNE0 DNA polymerase III, beta subunit (Fragment) n=1 ... 100 9e-20 UniRef50_A7HZD4 DNA polymerase III, beta subunit n=23 Tax=Campyl... 99 3e-19 UniRef50_Q3B6Y8 DNA polymerase III, beta subunit n=10 Tax=Chloro... 98 5e-19 UniRef50_C6HYH1 DNA polymerase III, beta subunit n=1 Tax=Leptosp... 98 6e-19 UniRef50_C3WBN0 DNA polymerase III beta subunit n=3 Tax=Fusobact... 97 1e-18 UniRef50_A6DUF3 DNA polymerase III, beta subunit n=1 Tax=Lentisp... 97 1e-18 UniRef50_B9L736 DNA polymerase III, beta subunit n=2 Tax=Nautili... 97 1e-18 UniRef50_C6WF88 DNA polymerase III, beta subunit n=1 Tax=Actinos... 97 1e-18 UniRef50_C9M5Q0 DNA polymerase III, beta subunit n=1 Tax=Jonquet... 97 1e-18 UniRef50_B8DV07 DNA polymerase III, beta subunit n=20 Tax=Bifido... 96 2e-18 UniRef50_Q2B8R4 DNA polymerase III subunit beta n=1 Tax=Bacillus... 96 2e-18 UniRef50_C3I1F8 DNA polymerase III, beta subunit n=1 Tax=Bacillu... 96 3e-18 UniRef50_Q7MTT8 DNA polymerase III, beta subunit n=2 Tax=Porphyr... 94 7e-18 UniRef50_C8PKQ5 DNA polymerase III, beta subunit n=2 Tax=Campylo... 94 9e-18 UniRef50_C9RC59 DNA polymerase III, beta subunit n=2 Tax=Ammonif... 93 1e-17 UniRef50_C7NAH5 DNA polymerase III, beta subunit n=4 Tax=Fusobac... 91 7e-17 UniRef50_A9G2I6 DNA polymerase III, beta subunit n=1 Tax=Phaeoba... 91 7e-17 UniRef50_B0RH70 DNA polymerase III, beta chain n=4 Tax=Actinobac... 91 7e-17 UniRef50_D1WRR1 DNA polymerase III, beta subunit n=5 Tax=Strepto... 91 7e-17 UniRef50_UPI0001BC56D7 DNA polymerase III, beta chain n=2 Tax=Fu... 91 1e-16 UniRef50_A4F6K2 DNA polymerase III beta subunit n=1 Tax=Saccharo... 90 1e-16 UniRef50_C2BTM3 DNA polymerase III beta subunit n=1 Tax=Mobilunc... 90 1e-16 UniRef50_C9LP65 DNA polymerase III, beta subunit n=1 Tax=Dialist... 90 1e-16 UniRef50_P33761 DNA polymerase III subunit beta n=20 Tax=Borreli... 89 2e-16 UniRef50_P24117 DNA polymerase III subunit beta n=4 Tax=Mycoplas... 89 2e-16 UniRef50_A0NQ72 DNA polymerase III subunit beta n=1 Tax=Labrenzi... 89 3e-16 UniRef50_B8DQA6 DNA polymerase III, beta subunit n=4 Tax=Desulfo... 88 5e-16 UniRef50_A6Q665 DNA polymerase III, beta subunit n=4 Tax=Epsilon... 88 5e-16 UniRef50_C8SWZ6 DNA polymerase III, beta subunit n=1 Tax=Mesorhi... 87 1e-15 UniRef50_B7IYX6 DNA polymerase III, beta subunit n=3 Tax=Bacillu... 86 2e-15 UniRef50_B9PE07 Predicted protein (Fragment) n=1 Tax=Populus tri... 86 2e-15 UniRef50_C7REZ6 DNA polymerase III, beta subunit n=5 Tax=Anaeroc... 85 5e-15 UniRef50_D2PYX2 DNA polymerase III, beta subunit n=1 Tax=Kribbel... 84 6e-15 >UniRef50_P26464 DNA polymerase III subunit beta n=211 Tax=Gammaproteobacteria RepID=DPO3B_SALTY Length = 366 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/366 (95%), Positives = 358/366 (97%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV L Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG+RMLVRSGRSRFSLSTLPAADFPNLD Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEVEFTLPQATMKRLIE+TQFSMAHQDVRYYLNGMLFETEG ELRTVATDGHRLAVC Sbjct: 121 DWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 SMP+ SLPSHSVIVPRKGVIELMRMLDGG+NPLRVQIGSNNIRAHVGDFIFTSKLVDGR Sbjct: 181 SMPLEASLPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDYRRVLPKNPDKHLEAGCD+LKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE Sbjct: 241 FPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EAEEILDV+Y G EMEIGFNVSYVLDVLNALKCE VR+MLTDSVSSVQIEDAASQSAAYV Sbjct: 301 EAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSAAYV 360 Query: 361 VMPMRL 366 VMPMRL Sbjct: 361 VMPMRL 366 >UniRef50_P22838 DNA polymerase III subunit beta n=29 Tax=Gammaproteobacteria RepID=DPO3B_PROMI Length = 367 Score = 622 bits (1604), Expect = e-177, Method: Compositional matrix adjust. Identities = 305/367 (83%), Positives = 340/367 (92%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +ERE LLKPLQQVSGPLGGRPTLPILGNLLL+V + TLSLTGTDLEMEM+ARV+L Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q HE GATTVPARKFFDI RGLPEGAEI+V+L+G+R+LVRSGRSRFSLSTLPA+DFPNLD Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEVEFTLPQAT+KRLIE+TQFSMAHQDVRYYLNGMLFETE ELRTVATDGHRLAVC Sbjct: 121 DWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 +M IGQSLP HSVIVPRKGVIELMR+LDG G++ L++QIGSNN+RAHVGDFIFTSKLVDG Sbjct: 181 AMDIGQSLPGHSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDYRRVLPKNP K + AGCD+LKQAF+RAAILSNEKFRGVR+ ++ QLKITANNPEQ Sbjct: 241 RFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEEI+DV Y G EMEIGFNVSY+LDVLN LKCE V+++LTD+VSSVQ+E+ AS +AAY Sbjct: 301 EEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEVKLLLTDAVSSVQVENVASAAAAY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_Q1LTW3 DNA polymerase III, beta subunit n=47 Tax=Bacteria RepID=Q1LTW3_BAUCH Length = 370 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/370 (59%), Positives = 284/370 (76%), Gaps = 4/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ER++LLKPLQQVS L GR LPIL +LLLQV + L LTGT+LE+E+VA++ + Sbjct: 1 MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G V ARK FDICR LPE A I + LEG MLV +GRSRFSL TLPA +FP + Sbjct: 61 KVDKIGIIMVCARKLFDICRSLPEDALINITLEGTVMLVIAGRSRFSLMTLPATNFPKIA 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D ++++ F LP T+K++I++TQFSMAHQDVRY LNG+LFE G+ELRTVATDGHRLA C Sbjct: 121 DGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELRTVATDGHRLAAC 180 Query: 181 SMPIG--QSLPSHSVIVPRKGVIELMRM--LDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 ++ I + LP S+IVPRKGVIEL+R+ LD GDN +++QI SNNIR ++ ++IFTS L Sbjct: 181 TIYINVLKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNYIFTSNL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G FPDY VLPKN +K L+ DL+KQA R AILSN+KFR VRLY+ +NQLKITA N Sbjct: 241 IEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQLKITAKN 300 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 EQEEAEEILDV+Y G E+E+ FNV+Y+LD+L LKC+ VR++ + SSVQI+D + Sbjct: 301 LEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKCDTVRLLFNNEASSVQIDDCMNPM 360 Query: 357 AAYVVMPMRL 366 + Y+VMPMR+ Sbjct: 361 SIYIVMPMRM 370 >UniRef50_P0A120 DNA polymerase III subunit beta n=15 Tax=Gammaproteobacteria RepID=DPO3B_PSEPK Length = 367 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/368 (55%), Positives = 269/368 (73%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 +P EPG TVPARK DIC+ LP A I ++++ +++LV++GRSRF+LSTLPA DFP ++ Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + L Q+ ++RLIE T F+MA QDVRYYLNGML E LR V+TDGHRLA+C Sbjct: 121 EGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALC 180 Query: 181 SM--PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 SM PI Q H VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLVD Sbjct: 181 SMSAPIEQE-DRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVD 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RVLPK DK + L++AF+R AILSNEK+RG+RL ++ QLKI ANNPE Sbjct: 240 GKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPE 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEEAEE + V Y G+ +EIGFNVSY+LDVL + E VR++L+DS SS +++A + ++ Sbjct: 300 QEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSS 359 Query: 359 YVVMPMRL 366 YVVMPMRL Sbjct: 360 YVVMPMRL 367 >UniRef50_Q9I7C4 DNA polymerase III subunit beta n=77 Tax=Proteobacteria RepID=DPO3B_PSEAE Length = 367 Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++ Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C Sbjct: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180 Query: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S+ +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV Sbjct: 181 SLD--AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP Sbjct: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + + Sbjct: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358 Query: 358 AYVVMPMRL 366 AYVVMPMRL Sbjct: 359 AYVVMPMRL 367 >UniRef50_B0RLI9 DNA polymerase III beta chain n=34 Tax=Gammaproteobacteria RepID=B0RLI9_XANCB Length = 366 Score = 362 bits (930), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 185/367 (50%), Positives = 265/367 (72%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT++RE LKPL QV + R TLP+L NLL+QV +G LSLTGTDLE+EM++R +V Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRT-MV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G TT+PARK FDI R LP+G+ + V G+++ V++GRSRF+L+TLPA DFP++D Sbjct: 60 EDAQDGETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFPSVD 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + ++ +P+A +K L+E T F+MA QDVRYYLNG+LF+ LR VATDGHRLA+C Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179 Query: 181 SMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + +S +IVPRKGV EL+R+L+ D + +++G ++IR GD FTSKL+DG Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDY V+P D+ ++ + L+ + RAAILSNEK+RGVR+ VS QLKI+A+NPEQ Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAHNPEQ 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEA+E ++ ++ IGFNV+Y+LD L+AL+ E+V + L D+ SS + +A+S+ + + Sbjct: 300 EEAQEEIEADTKVDDLAIGFNVNYLLDALSALRDEHVVIQLRDANSSALVREASSEKSRH 359 Query: 360 VVMPMRL 366 VVMP+RL Sbjct: 360 VVMPLRL 366 >UniRef50_A6AHE8 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Vibrio cholerae 623-39 RepID=A6AHE8_VIBCH Length = 250 Score = 346 bits (888), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 162/247 (65%), Positives = 199/247 (80%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ER HL+KPLQQVSG LGGR +LPILGNLLL+V + LS+T TDLE+E+++RV L Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TVPARKF DICRGLP+ A I V LEG+R+ VRSGRSRFSL+TLPA+DFPN++ Sbjct: 61 GEFEAGCITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEV+ +L QA ++ LIE TQFSMA+QDVRYYLNGMLFE +G LR+VATDGHR+AV Sbjct: 121 DWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVA 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 +G +IVPRKGV+EL+++LD + P+ +QIG +N+RA V F+FTSKLVDGR Sbjct: 181 QAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGR 240 Query: 241 FPDYRRV 247 FPDYRRV Sbjct: 241 FPDYRRV 247 >UniRef50_Q3JF38 DNA polymerase III, beta subunit n=4 Tax=Gammaproteobacteria RepID=Q3JF38_NITOC Length = 367 Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 170/369 (46%), Positives = 237/369 (64%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F+++RE +++ L V G + R TLPIL N+LL V D LSL TDLE+E+ R AL Sbjct: 1 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEI--RTALK 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 V E G TV ARKF +ICR LP G+ + Q + + + SGRSRF+LSTLPA DFP++ Sbjct: 59 VLSSEEGKVTVSARKFLEICRALPSGSALEAQYKEGQFYIHSGRSRFTLSTLPAEDFPSI 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D + E L QA +K+L+ T F MAHQDVRYYLNG+L E E + VATDGHRLA+ Sbjct: 119 DSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIHAVATDGHRLAL 178 Query: 180 CSMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S+ G + I+PRK ++EL+R+L+ P+R++ G+N +RA F++KL+ Sbjct: 179 ASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFSTKLI 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG+FPDY+RV+P +K A + KQA R IL+N+K+RGV L++S+ +L+ N Sbjct: 239 DGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIVTNL 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EQ AEE LD+ Y G +EI FN Y++DVLN + + VR+ T++ SS I + + Sbjct: 299 EQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEVRLTFTNASSSCLITPIDASDS 358 Query: 358 AYVVMPMRL 366 YVVMPMRL Sbjct: 359 KYVVMPMRL 367 >UniRef50_Q31JS4 DNA polymerase III, beta subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JS4_THICR Length = 368 Score = 330 bits (846), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 164/368 (44%), Positives = 241/368 (65%), Gaps = 2/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ RE+LLK LQ V G + R T+PIL N+L QV TL++T +DLE+E A L Sbjct: 1 MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + T+PA K I R LP+G I ++ + R + +GRSRF LSTLPA DFP +D Sbjct: 61 SSDGDFSVTLPAVKLISIVRSLPDGLTILLEFDEMRCQLSAGRSRFKLSTLPADDFPTID 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 Q+E+ F++ Q +K++I T F+MA QDVR+YLNGMLF+ + LR VATDGHRL+ C Sbjct: 121 LTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRVVATDGHRLSTC 180 Query: 181 SMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S + + L + I+PRKGV+EL +++ D+ + + N + + +FT KLVDG Sbjct: 181 STLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTCKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPD+ RVLP++ D+ ++ +LL+ RAAILSN+KF+G+RL +S+N L + A N +Q Sbjct: 241 RFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHAQNSDQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE-DAASQSAA 358 +E+ E + + Y+G EMEIGFNV+Y+LDVLN++ E V + + D+ SS ++ + Sbjct: 301 DESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMHEEAVTLYMKDANSSCMVDTQNETCHCQ 360 Query: 359 YVVMPMRL 366 +V+MPMRL Sbjct: 361 HVIMPMRL 368 >UniRef50_Q7VQU9 DNA polymerase III beta-subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VQU9_BLOFL Length = 367 Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 234/367 (63%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F VER + L++V + R LPIL ++LL V D L +T TDLE+E+VA + L Sbjct: 1 MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + + TVP KFF+IC+ LPE ++I + L+ R L+ SG S F LS LP DFP + Sbjct: 61 KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQENRFLISSGCSNFVLSILPVLDFPKVK 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++E T+PQ +K++I+ TQFSM +QD RYYLNG+ +TE + V+TDG+RL++C Sbjct: 121 KYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGICLKTEKNTISMVSTDGYRLSMC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + LP SVI+PRKGV+E+ +L G +++Q+ +NNI + +++ SKL+D Sbjct: 181 EVTSKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIRSKLIDSE 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY+++ P E +LK A RA+ILSNEK R V Y++ NQLKIT +N ++E Sbjct: 241 FPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKITTDNFKEE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA-Y 359 +EEIL + +S + I FNV Y+LDV+N + + ++ L ++VSSVQIE + Y Sbjct: 301 TSEEILKILFSYENISISFNVDYLLDVINVVDSQMLKFSLINTVSSVQIEGVPKYYGSIY 360 Query: 360 VVMPMRL 366 ++MP+++ Sbjct: 361 IIMPVKV 367 >UniRef50_P57127 DNA polymerase III subunit beta n=34 Tax=Buchnera aphidicola RepID=DPO3B_BUCAI Length = 366 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 155/365 (42%), Positives = 235/365 (64%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L+K LQ++S L +LPIL N+L+ + +G LSLTGT+LE+E+VA + L Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 H G T+ RK DICR + I +QL +M + SG SR+ L+TLP FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNNNKMHIISGNSRYILTTLPYDSFPVHH 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D+ EF +P +K++IE QFSMA QDVRYYLNG+L E L VATDG+RL + Sbjct: 121 DFHHISEFFIPSDILKKMIEKIQFSMAKQDVRYYLNGILLEKTDRSLYAVATDGYRLGIS 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +++ S+++PRKGVIEL R+L+ P++V +G NNIR H+ D IFT++L++G+ Sbjct: 181 KFFLKENIIPFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQ 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +PDY+ VL +N + + LLKQ+ RAAILS+EKF GV +++ Q K+ ++N E+E Sbjct: 241 YPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 AE+ ++ Y+G ++I NV Y++++LN++ EN+ + L ++ +S+QIE S YV Sbjct: 301 IAEDRFNINYTGNTVKISINVYYIIEILNSITSENIFLFLNNANNSIQIEAENDASILYV 360 Query: 361 VMPMR 365 VM ++ Sbjct: 361 VMLLK 365 >UniRef50_Q602N1 DNA polymerase III, beta subunit n=1 Tax=Methylococcus capsulatus RepID=Q602N1_METCA Length = 366 Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 169/367 (46%), Positives = 230/367 (62%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + RE LL PLQQV G + R TLPIL N+L++V G + L GTDLE+++VA + Sbjct: 1 MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDM- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G TVPARK DICR LPEG E+A ++ ER+ ++ G+SRF L LPA ++PN + Sbjct: 60 EGKESGRFTVPARKLMDICRLLPEGGELAFDVKPERVSLQCGKSRFILGALPAENYPNFE 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E F ++R IE T F+MA QDVRYYLNG+L E +R VA+DGHRLA+ Sbjct: 120 HGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQGRIRAVASDGHRLALF 179 Query: 181 SMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + G + +I+PRKGV+EL R+L + V+I +NN+R G F F KLV+G Sbjct: 180 EDAVDGMPDVARQIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFAVKLVEG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 R+PDY RV+PK + + L+ A R A+LSNEKF+GV L + E +++ A NPE Sbjct: 240 RYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLRAQNPEH 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAE+ + SG +GFN SY+LD +NA+ + VRM TD+ S IED + + Sbjct: 300 EEAEDEVPADVSGEAFAVGFNASYLLDAINAVASDAVRMSFTDANGSCLIEDLSDSRYRF 359 Query: 360 VVMPMRL 366 +VMPMRL Sbjct: 360 IVMPMRL 366 >UniRef50_A4G155 DNA polymerase III, beta subunit n=14 Tax=Betaproteobacteria RepID=A4G155_HERAR Length = 368 Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 232/362 (64%), Gaps = 1/362 (0%) Query: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65 +R+ LL+PLQ VSG + R TLPIL N+L++ +S TD+E+++ + +E Sbjct: 7 QRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSGNEI 66 Query: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW-QS 124 +TTV ARK DI R LP+ ++++ L +RM V+SG+SRF+L TL A +FP + Q Sbjct: 67 ASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVAQAEQY 126 Query: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184 + TLPQ T+K L FSMA QD+RYYLNG+L +G+ + VATDGHRLA C + Sbjct: 127 NAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVAT 186 Query: 185 GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY 244 Q VI+PRK +IEL R+L+ D P+ ++I ++ ++ GD SKLV+G+FPDY Sbjct: 187 EQEFARQEVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKLVEGKFPDY 246 Query: 245 RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEE 304 RV+PK + G D L ++ RAAI++++KF+GVR +S +KI++ N +QEEA E Sbjct: 247 TRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNADQEEAVE 306 Query: 305 ILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPM 364 +++ Y G ++IGFNV+Y+LDVLN LK +N+ + L D+ SS I + YVVMPM Sbjct: 307 EIEIDYGGDSVDIGFNVTYLLDVLNNLKGDNINIALGDANSSALITVPDNPDFKYVVMPM 366 Query: 365 RL 366 R+ Sbjct: 367 RI 368 >UniRef50_A3M0Q5 DNA polymerase III n=16 Tax=Acinetobacter RepID=A3M0Q5_ACIBT Length = 382 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 174/383 (45%), Positives = 236/383 (61%), Gaps = 18/383 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA AL Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 QPH--EPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 + E G TTVPARK +IC+ LP A I +Q+ E +R +++SG SRF L TLPA D+P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120 Query: 118 NLDDWQSE-VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 L S+ + + Q +KRL E T F+MA QDVR+YL G L E + +LR V TDGHR Sbjct: 121 LLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHR 180 Query: 177 LAVCSMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV------- 227 LA+C + + S S V IVPRK V EL R+L D L + IG + + Sbjct: 181 LALCEI-LASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDK 239 Query: 228 --GDFI--FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 GD FT+KL+DG+FPDYRRV+P+ DKH+ G D+ KQ+ R AILSNEK RGV L Sbjct: 240 EQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFL 299 Query: 284 YVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS 343 +++ L++ ANNPEQ+EA E L + Y A +E+ FN Y+LDVL L ++V M +T++ Sbjct: 300 NFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDGDDVNMSMTEA 359 Query: 344 VSSVQIEDAASQSAAYVVMPMRL 366 SV ++D A YVVMPMR+ Sbjct: 360 NQSVLVQDPAHPDQTYVVMPMRV 382 >UniRef50_Q1GXK0 DNA polymerase III, beta subunit n=2 Tax=Methylophilales RepID=Q1GXK0_METFK Length = 367 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 226/368 (61%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + R+ LLKPL VS + R TLPIL NLLL+ + LT TDLEM++ V Sbjct: 1 MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E +TT+ A+K DICR LPE AEI + + R+ V++G+SRF+L TLPA D+P + Sbjct: 61 AGGEL-STTISAKKLLDICRSLPENAEITMATQDSRIQVKTGKSRFNLQTLPAGDYPLMT 119 Query: 121 DWQ--SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + S + Q ++KRL + +F+MA QD+RYYLNG+LFE G L V TDGHRL+ Sbjct: 120 KTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGNRLNVVGTDGHRLS 179 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S + S +I+PRK VIEL+++LD ++ + +++ + GD SK++D Sbjct: 180 FTSTELASSYEKQEIILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLISKVID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+P ++ + RA+ILSNEK+RG+R+ +S N LK+ + N E Sbjct: 240 GKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLISTNSE 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEEAEE L+++Y G+ ++IGFNV+Y++DVLN E+V D+ SS + + Sbjct: 300 QEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDSESVTFSFADANSSCLVTVENDDNYK 359 Query: 359 YVVMPMRL 366 YVVMPMR+ Sbjct: 360 YVVMPMRI 367 >UniRef50_B9ZMT6 DNA polymerase III, beta subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMT6_9GAMM Length = 367 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 225/368 (61%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 M+ + +RE + LQ++ G R T+PILGN+ L+ + G + + TDLE+ A Sbjct: 1 MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQGEAAG 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 P E TV RK D+ + PE +EI ++GERM V SRFSL+TLP ADFP+ Sbjct: 61 TIPGECD-VTVSVRKLLDVVKAAPEDSEIRATIDGERMSVGFAGSRFSLATLPGADFPDW 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + SE +PQ ++RL+EAT FSMA QDVRYYL G+L G LR VATDGHRLA+ Sbjct: 120 ESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLRAVATDGHRLAL 179 Query: 180 CSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + Q++ IVPRK + EL R L D P+RV + + +G+ + SK+++ Sbjct: 180 AEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDLGNAVLRSKVIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GRFPDY RV+P + L + LKQA AR +I++++K+RGVR+ + + ++ +N + Sbjct: 240 GRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGDEGCQVMTHNAD 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +EEA+E ++ Y G MEIGFN+ Y++DVLNA++ + VR+ L D SS+ ++ A Sbjct: 300 REEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIETDQVRIGLRDGNSSILVQAEPPGGAR 359 Query: 359 YVVMPMRL 366 YVVMPMRL Sbjct: 360 YVVMPMRL 367 >UniRef50_A5I9F2 DNA polymerase III beta chain n=6 Tax=Legionella RepID=A5I9F2_LEGPC Length = 367 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 231/367 (62%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 + T+++E LL PL VSG + + +L IL + LL+++DG L +T TDLE+EM A+VA Sbjct: 2 FELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACD 61 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G+ TVPA+KF DI R L E ++ + + ++ RS F L+TLPA ++P+ + Sbjct: 62 SNNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKALVTIKQNRSTFKLATLPAENYPSSE 121 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D ++VE T+P+ + +L+++T F+M+ QDVR +LNG+L E + + VATDGHR+A+ Sbjct: 122 DECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSNIISAVATDGHRMAIS 181 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 ++ +++P+KGV EL+R+L+ D + + G ++I+ F+F SKL++ Sbjct: 182 RYSCN-NITQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLSKLIEA 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFP Y + +P+ DK++ C LK+A +R IL++EK + V L++ QL + ANN EQ Sbjct: 241 RFPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTLIANNNEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEA E L G E++IG N +Y+LDVL +R+ ++++ SS+ IE + + Y Sbjct: 301 EEAIETLSAETQGDELKIGLNATYLLDVLAHFSDGQIRLSMSNTESSILIESLVNDNYQY 360 Query: 360 VVMPMRL 366 ++MPM++ Sbjct: 361 IIMPMKI 367 >UniRef50_A7C334 DNA polymerase III, beta chain n=1 Tax=Beggiatoa sp. PS RepID=A7C334_9GAMM Length = 375 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 233/377 (61%), Gaps = 13/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F + R+ LL PL+ ++G + R TLPIL N L+ V D TL T TD E+E+ + L Sbjct: 1 MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60 Query: 61 QP-----HEPGATTVPARKFFDICRGLPE--GAEIAVQLEGE--RMLVRSGRSRFSLSTL 111 HE G TT+PARKFFDICR L + A+I V +E E + +V++G+S+F L TL Sbjct: 61 SDNLGTDHE-GKTTLPARKFFDICRALSDDKNAKIQVSIEDETSQAIVKAGKSKFKLQTL 119 Query: 112 PAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 PA DFP + + EF++ Q +K L+ T F +A DVRYYL G+L E ++ + Sbjct: 120 PADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEISDGKISLIG 179 Query: 172 TDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGD- 229 TDGHR+AV + + VI+PRK V+EL ++L D + + V N+I + D Sbjct: 180 TDGHRMAVAQHDF-EGEENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKLSDS 238 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 I SKL+DG FPD+ V+P +P+K + A LKQA RA+ILSNEK++G+R ++EN Sbjct: 239 LIMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLTENL 298 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L I+A N QEEAEEI++V Y+G E+E+GFN Y+LD +N + + V++ D SS I Sbjct: 299 LTISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKTVQLAFVDQNSSCLI 358 Query: 350 EDAASQSAAYVVMPMRL 366 + ++ + ++VMPMRL Sbjct: 359 MEEDNEDSKFIVMPMRL 375 >UniRef50_C5V0W8 DNA polymerase III, beta subunit n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0W8_9PROT Length = 368 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 146/364 (40%), Positives = 225/364 (61%), Gaps = 3/364 (0%) Query: 5 VEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHE 64 +E+E LLKPLQ V G + + T+PIL N+L++ G + T TDLE+++ + HE Sbjct: 6 IEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADHE 65 Query: 65 PGAT-TVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQ 123 A TV +K +I R LP+ ++++++++ + ++S +S+F+L +LPA DFP L + Sbjct: 66 SNAAITVGGKKLQEILRILPDQSKVSIEVKENKAQIKSNKSKFNLQSLPAQDFPTLSNQL 125 Query: 124 SEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 ++ + +L Q +K L + QF+MA QDVRYYLNG+LF E R VATDGHRLA ++ Sbjct: 126 ADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVIEDNIFRAVATDGHRLAYNAI 185 Query: 183 PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFP 242 I S +I+PRK ++EL ++L D + ++ S ++A T+KL++G+FP Sbjct: 186 AIESSSEKIEIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTKLIEGKFP 245 Query: 243 DYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302 DY+RV+P N HL L++QA RAAILSNEKFRGVR ++E L I ++N EQEEA Sbjct: 246 DYQRVIP-NYTNHLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISSNSEQEEA 304 Query: 303 EEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVM 362 + ++ Y G ++IGFNV+Y++D L+++ E + SS+ I YVVM Sbjct: 305 QVEIETDYHGEAIDIGFNVNYLMDGLSSVHSEMAIFSFGNPNSSILITSPDDLEFRYVVM 364 Query: 363 PMRL 366 PMR+ Sbjct: 365 PMRI 368 >UniRef50_Q89B36 DNA polymerase III subunit beta n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=DPO3B_BUCBP Length = 371 Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 224/369 (60%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L+K L++V+ + PIL N+LL D T++LT T+++ME+ + V Sbjct: 1 MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIIILDV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG+ TV +K +IC+ LP+ + +Q ++ + S +++ L+TLP +FPNL Sbjct: 61 TLLEPGSITVSGKKILNICQNLPKDHNLKIQYINNKLKIVSHNNQYLLATLPIKNFPNLK 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++ F + Q +K ++ AT FSMA QD+R +LNG+ FE + L VATDG+R+A+C Sbjct: 121 ISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHLYAVATDGYRIAIC 180 Query: 181 SMPIGQ--SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P+ +S+I+PRKGV+EL+++L+ + + + I +N + + IFTSK++ Sbjct: 181 KKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNLIFTSKIIT 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 +FPDY ++ + K + L K+A +R AILSNE FRGV + +N+L IT +N Sbjct: 241 EKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKLLITTSNQH 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ--- 355 EEA EI+D+ Y+ ++++ N SY++D+LNA++ + + + D S+QI+ + Sbjct: 301 DEEASEIIDIIYTNIKIKMSINASYMIDILNAIQDQEICLSKNDVTHSIQIQAHHYKIAP 360 Query: 356 SAAYVVMPM 364 A Y++MP+ Sbjct: 361 KAIYIIMPL 369 >UniRef50_Q8D3I6 DnaN protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3I6_WIGBR Length = 369 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 232/370 (62%), Gaps = 5/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MKF++ RE++L LQQ+ ++PI+GN+L+ V + ++ +TGTDLE E+ ++ L Sbjct: 1 MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + EPG TTV +K DI + P+ + I L+ E++ + +S+F L TLP +FPNL Sbjct: 61 ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNEKLFILCKKSKFVLCTLPYKNFPNL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++W+ +++ + + +K+LIE+T FS+A+QD+R YLNGML E + +R+V+T+GHRL+ Sbjct: 121 NNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIRSVSTNGHRLSK 180 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + I +++ ++ I+PR GV L+R+L+ + + + IG +IR ++ +I T+KL++ Sbjct: 181 SKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILTTKLLE 240 Query: 239 GRFPDYRRVLPKNPD--KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 G FP+Y+ + KN L C +LK R +++S +K + + L + +N L I N Sbjct: 241 GEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVIS-DKSKCINLNLKKNLLIINIKN 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 QE AEE L+ Y G EMEI N Y+LD LN ++ + V++ +T+S S++ + D Sbjct: 300 FNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESKRVKIFVTNSYSAIILADEIYNY 359 Query: 357 AAYVVMPMRL 366 ++++MPMRL Sbjct: 360 TSHIIMPMRL 369 >UniRef50_C9YCP5 DNA polymerase III subunit beta n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCP5_9BURK Length = 362 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 206/333 (61%), Gaps = 1/333 (0%) Query: 7 REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPG 66 ++ +L LQ V+G + R TLPIL N+LL+ +L LT +DLE+++ L Sbjct: 8 QDKVLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGDTGSF 67 Query: 67 ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQS-E 125 TT+ ARK DI R +P ++++ +++++ G+S+F+L T+ A DFP + + S Sbjct: 68 TTTIGARKLIDILRTMPGDQTVSLESSQSKIILKGGKSKFTLQTMQAEDFPLVQESASFG 127 Query: 126 VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIG 185 F++PQ T+K L+ F+MA D+RYYLNG+LF EG++L VATDGHRLA S + Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFASATLD 187 Query: 186 QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYR 245 +P VI+PRK VIEL R+L + + +Q +N + F +KLV+G+FPDY Sbjct: 188 VEVPKQEVILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTKLVEGKFPDYN 247 Query: 246 RVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEI 305 RV+PKN + G + L + R AIL+++KF+GVRL + L++ +NN EQEEA + Sbjct: 248 RVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASNNAEQEEAVDE 307 Query: 306 LDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 LD+ Y G +EIGFNV+Y++D L+ + + V++ Sbjct: 308 LDIDYGGDSIEIGFNVTYLIDALSNMSQDMVKV 340 >UniRef50_C1D6W8 DnaN n=29 Tax=Betaproteobacteria RepID=C1D6W8_LARHH Length = 377 Score = 263 bits (671), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 154/347 (44%), Positives = 222/347 (63%), Gaps = 11/347 (3%) Query: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65 +R+ LLKPLQ V+G + R TLPIL N+L++ + TL+ TDLE+++ P EP Sbjct: 7 DRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITH----ASP-EP 61 Query: 66 GA-----TTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL- 119 A T A+KF DI R +P+ + + E R+ V++G+SRF+L +LPA DFP L Sbjct: 62 IAGPDFRLTTSAKKFSDILRAIPDRTTVTLDHEDGRLTVKAGKSRFNLQSLPADDFPLLT 121 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ F LPQ K L+ Q++MA QD+RYYLNG+L T+G +++ VATDGHRLA Sbjct: 122 QSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKLVATDGHRLAF 181 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 M + LP+ VI+PRK + EL ++L D+ + + + +N +R G + SK+VDG Sbjct: 182 AQMTLDTPLPAAEVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVIVSKVVDG 241 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FPDY RV+P + DK G L+QA ARAAIL+NEKFRGVRL + +L+I NN EQ Sbjct: 242 KFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRIQCNNSEQ 301 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 EEAEE L++ Y G+ +EIGFN++Y+ DVL AL + +++ D+ S Sbjct: 302 EEAEEELEIAYGGSGLEIGFNITYLQDVLAALHVDTLQLAFGDANRS 348 >UniRef50_Q4FVT2 DNA polymerase III, beta subunit n=5 Tax=Moraxellaceae RepID=Q4FVT2_PSYA2 Length = 391 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 230/392 (58%), Gaps = 27/392 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ ++ RE LLK + ++ R + ILGN+ LQ+++ L LT +DLE+E+ + + L Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60 Query: 61 QPH--EPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 + G TT+PA K DIC+ LP A++ + E ER L+ SG+SRF+L TLP+ D+P Sbjct: 61 AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTTQENERCLLTSGKSRFTLGTLPSEDYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +L + ++ T+ ++ + LI TQF+MA QDVRYYL GMLF+ ++L TVATDGHRL Sbjct: 121 SLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQQLTTVATDGHRL 180 Query: 178 AVCSMPIGQSLP-SHSVIVPRKGVIELMR-------MLDGGDNPLRVQIGSNNIRAHV-- 227 A+ I + + I+PRK VIEL R ML DN + + G ++ + Sbjct: 181 ALARSVIDVNADLNMQAILPRKAVIELERLASELGKMLGDQDNAVTLSFGREFLQVSLPF 240 Query: 228 GD------------FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN 275 GD FT++L+DG+FPDYRRV+P N DK + + R AILSN Sbjct: 241 GDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVAILSN 300 Query: 276 EKFRGVRL-YVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 EK RGV + S+ +++ ANN EQ+EA E++ Y G ME+ FN +Y+ DVL ++ + Sbjct: 301 EKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGVIQGD 360 Query: 335 NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 ++M ++ S +SV + + YV+MPMR+ Sbjct: 361 -LQMHMSQSNASVLVNQLNDEFHQYVIMPMRI 391 >UniRef50_A0Q3U8 DNA polymerase III, beta subunit n=19 Tax=Francisella RepID=A0Q3U8_FRATN Length = 367 Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 217/369 (58%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F + R+ LLKPLQ + + T+P+L +L + + L +T +DL+ E+ +A V Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + A K ++I R L E + I ++ ++ + S S F+L +L A ++P +D Sbjct: 60 SCNTTIKLALNADKIYNIVRSLNENSMIDFRVNENKVTIVSNNSTFNLISLNADNYPLID 119 Query: 121 -DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + F L Q +I FSMA+ D RY+LNGM +E LR V+TDGHR+++ Sbjct: 120 SNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRMSI 179 Query: 180 CSMPIGQSL--PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I + + I+P+K ++EL +++ + +++ +G N ++A G++ F SKL+ Sbjct: 180 TEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DGR+PDY++V+PKN K L K + R +IL+N+K++GVRL +S+NQL ++ANNP Sbjct: 240 DGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + E+AE+ ++V Y+ MEI FN Y+LD++N L E + + L + S ++D S Sbjct: 300 DNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLSEETMSIYLDNPNMSALVKDEKDNS- 358 Query: 358 AYVVMPMRL 366 +++MPM++ Sbjct: 359 LFIIMPMKI 367 >UniRef50_B1Y548 DNA polymerase III, beta subunit n=92 Tax=Betaproteobacteria RepID=B1Y548_LEPCP Length = 381 Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 153/374 (40%), Positives = 221/374 (59%), Gaps = 14/374 (3%) Query: 7 REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPG 66 +E +L LQ VSG + R TLPIL N+L++ + G LT +DLE+++ L Sbjct: 8 QEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGDESAF 67 Query: 67 ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQS-E 125 +TTV ARK DI R LP + + ++ ++ G+SRF+L TLPA DFP + + Sbjct: 68 STTVGARKLIDILRMLPSDQIVTLTAAQNKLTLQGGKSRFTLQTLPADDFPLVQEAADFG 127 Query: 126 VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIG 185 F++PQ T+K LI+ F+MA D+RYYLNG+LF EG+ L VATDGHRLA+ + Sbjct: 128 PAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTLVATDGHRLALAQATLE 187 Query: 186 QSLPSHSVIVPRKGVIELMRML------------DGGDNP-LRVQIGSNNIRAHVGDFIF 232 +P VI+PRK V+EL R+L +G + P + ++ N + G F Sbjct: 188 AEIPKQEVILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQAKFSFGGMEF 247 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 +KLV+G+FPDY RV+P+N H+ G L + RAAIL++EKF+GVR+ L+I Sbjct: 248 VTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRVNFEPGTLRI 307 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 ++N EQEEA+E L++ Y G +EIGFNV+Y++DVL + + V + L D+ SS I Sbjct: 308 ASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANVNEDMVTLSLQDASSSALITVP 367 Query: 353 ASQSAAYVVMPMRL 366 YVVMPMR+ Sbjct: 368 ERSGFKYVVMPMRI 381 >UniRef50_D0KVU1 DNA polymerase III, beta subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVU1_HALNC Length = 370 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 220/371 (59%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V+R+ + QV G + R T+ IL NLLL+VADG L+L TDLE+++ V V Sbjct: 1 MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVD-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q PGATTV ARK DI + + A+IA+ + + G F L+++ A FP + Sbjct: 60 QMQAPGATTVNARKLADIVKSASQDAKIALTQTDGWLEIDIGTGVFRLASIEAGSFPQMT 119 Query: 121 -DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D ++ ++ Q + LI+ TQFSMA QDVRY+LNG+L E + ++ VATDGHRLA Sbjct: 120 IDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPGQMTAVATDGHRLAY 179 Query: 180 CSMPIGQ-SLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + + VIVPRK V E+++ LD D+ + + N I +G+ SKL+ Sbjct: 180 AHLSDERLTENNRQVIVPRKMVSEMLKALDRDSDDEVSLAFRDNQIELLIGENYLISKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG++PDY RV+P++ K L LKQ RA+ILSNE+F G Y+S +L I ++N Sbjct: 240 DGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMIESSNA 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA--ASQ 355 E E ++E + V Y ++++I FN+SY+L++L ++ E V M L SSV I+ Sbjct: 300 EHESSKETMSVGYDASDLKISFNISYLLNILAVIESEEVCMELEAPESSVLIKPVMPGDI 359 Query: 356 SAAYVVMPMRL 366 + YV+MPM+L Sbjct: 360 DSKYVLMPMKL 370 >UniRef50_B8GXP6 DNA polymerase III subunit beta n=185 Tax=cellular organisms RepID=DPO3B_CAUCN Length = 372 Score = 249 bits (637), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 206/373 (55%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+ER LLK L V + R T+PIL N+LL LS + TDL+ME++ Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDE-GFA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE--RMLVRSGRSRFSLSTLPAADFPN 118 Q PG T PA ++I R LP+GA++++ G+ R+++++GRSRF+L LPA DFP Sbjct: 60 QIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPV 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEE--LRTVATDG 174 + + + RLI+ T+F+++ ++ RYYLNG+ T EG E LR VATDG Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179 Query: 175 HRLAVCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ MP + ++ VIVPRK + E R+++ + +Q+ +R G T Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 SK++DG FPDY RV+P++ K L DL +A R A +S EK R V+L V ++ +T Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 N E +A E ++V Y G EIGFN Y+LDV + D S + D Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPV 359 Query: 354 SQSAAYVVMPMRL 366 YV+MP+R+ Sbjct: 360 DPGVKYVLMPLRV 372 >UniRef50_Q0AK26 DNA polymerase III, beta subunit n=20 Tax=Nitrosomonadaceae RepID=Q0AK26_NITEC Length = 373 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 217/373 (58%), Gaps = 9/373 (2%) Query: 1 MKFTV-EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK T+ +R+ L KPLQ VSG + R TLPIL N+L+ + DG L+L TDLE+E+ A + Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 60 VQPHEPGA--TTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + G+ TV RK DI R LP G+ + + R+ + SG+SRFSL LPA DFP Sbjct: 61 PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRLQIVSGKSRFSLQLLPAEDFP 120 Query: 118 NL--DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 + D+ + + FTL Q +K+ ++ +MA QD+RYYLNG L E +L VATD H Sbjct: 121 RMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLIEDNKLMLVATDTH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA+ S + I+PRK V+EL+R L+ D P+ V+I S I H D + SK Sbjct: 181 RLAITSFDLDGQFEKSETIIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSDAVLVSK 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAG-CDLLKQAFARAAIL--SNEKFRGVRLYVSENQLKI 292 ++ G+F D+RR +P+ + D L A R AI+ SN+ FR V L ++ +L I Sbjct: 241 VISGKFIDFRRAIPQTSVFQFDINRLDFL-HALQRTAIISSSNDLFRNVHLNITNGKLNI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A N EQEEA+E +++ YS ++ FN+ Y+++VLN L E++R + S++ I Sbjct: 300 SAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDSEHIRCSFENMQSAILITLP 359 Query: 353 ASQSAAYVVMPMR 365 +V+MPMR Sbjct: 360 DDDQFNHVLMPMR 372 >UniRef50_A0L3I8 DNA polymerase III, beta subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3I8_MAGSM Length = 376 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 214/377 (56%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V RE LK LQ++ + R T+P LGN LL+ + L+LT TDLE+ M + Sbjct: 1 MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + GA V ARK F+I R LP+ + GER+++ GR+RF+L + A FP Sbjct: 60 EVESSGAIAVSARKLFEIVRELPQDSLRLRSEAGERLVLTCGRARFTLVGIRADIFPPFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF--------ETEGEE--LRTV 170 + FTL + +I T F+M+ + RY LNG+L E GE +R V Sbjct: 120 ETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVRIV 179 Query: 171 ATDGHRLAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 ATD HRLA+ M + + S +I+PRKGV E+ ++++ D + + + N IR Sbjct: 180 ATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSKPG 239 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 + TSKLV GRFP+Y+RV+P + LE + L R +LS+EK RG+R+ +S + Sbjct: 240 IVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSSDH 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 +K++A NPEQE AEE + +++G +M +GFN Y+ ++++ + VRM L D S V + Sbjct: 300 IKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANGDTVRMKLRDEESPVLV 359 Query: 350 EDAASQSAAYVVMPMRL 366 E+ ++ YV+MPMR+ Sbjct: 360 EEHSATGYLYVLMPMRV 376 >UniRef50_C8N933 DNA polymerase III, beta subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N933_9GAMM Length = 371 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 209/371 (56%), Gaps = 5/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MKF++ +E L+PL +SG + + T PIL + LLQ AD +L L GTD E+ + + Sbjct: 1 MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLKGTDTEVTLQILLHE 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + GA TVPA K D+ R LP A I LE E++LV++ S F ++TLPA DFP L Sbjct: 61 LNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKEQLLVKAAGSLFRIATLPAEDFPAL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRL 177 + E + +++ +FSMA +DVRYYLNGM +G + V+TDGHRL Sbjct: 121 AEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVSTDGHRL 180 Query: 178 AVCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + P+ + +IVP+KGV EL+++L P+ + +G + +G + TS+L Sbjct: 181 SCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYRLTSQL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +DG FP+Y +VLP+ + + ++ RA +L ++ G+RL E L++ A N Sbjct: 241 IDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQLAARN 300 Query: 297 PEQEEAEEILDVTY-SGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 E E A+E L++ ++E+ N++Y++D + + +NV++ + D S I + + Sbjct: 301 LENETADETLEIINPQNLQLEVALNINYLIDAIATISGDNVQLHIADGSSPCLITSSDDE 360 Query: 356 SAAYVVMPMRL 366 YV+MPMRL Sbjct: 361 GVRYVIMPMRL 371 >UniRef50_B5EJ65 DNA polymerase III, beta subunit n=3 Tax=Acidithiobacillus RepID=B5EJ65_ACIF5 Length = 365 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 206/369 (55%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T++RE LL L ++ RP PIL ++L++ A TDLE+++ A L Sbjct: 1 MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSAD--LD 58 Query: 61 QPHE-PGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 P + PG VPARK +DICR LPE I +GE++L+++ +SRF+L LPA FP L Sbjct: 59 HPVDAPGTCAVPARKLYDICRALPEHTPIEFHKDGEKLLLKAAKSRFTLHILPADQFPYL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 S + T + + +MA D R +LNG+L E EG+ELR VATDGHRLA+ Sbjct: 119 STHSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRLVATDGHRLAM 178 Query: 180 CSMPIGQSLP--SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 ++P SL S+ I+PRK V+EL+R+LD GD + +++ + + G F KL+ Sbjct: 179 MTLPFASSLESGSYQAILPRKAVLELLRILDDGD--IVLEMSDASFLLNDGTQQFACKLI 236 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 D ++PDYRRV+P+ + K A ++ +L +++ L++ +Q+ + + N Sbjct: 237 DAKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRSRNE 296 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EQEE E + V Y G ++I FN Y+ D E++RM + DS SS S + Sbjct: 297 EQEEGEIQIPVEYQGDTLDIAFNSRYLTDTTQIFPQESLRMRVKDSDSSAVFTPVDSNNP 356 Query: 358 AYVVMPMRL 366 Y++MP+RL Sbjct: 357 LYIIMPVRL 365 >UniRef50_A1AJX3 DNA polymerase III, beta subunit n=10 Tax=Desulfuromonadales RepID=A1AJX3_PELPD Length = 373 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 212/378 (56%), Gaps = 17/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F +++E LK LQ++ G + R ++PIL N+LL+ + +L +T TDLE+ M + Sbjct: 1 MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGM----KCI 56 Query: 61 QPHE---PGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 P E PG TV A+K ++I + LP + + + +R G+ F++ L A +FP Sbjct: 57 YPAEILSPGRITVGAKKIYEIVKELPNQQISFSAKDNDWVEIRCGKVHFNIVGLSAEEFP 116 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-----LRTVAT 172 + E F + A +K +IE T +++ + D +Y LNG+ +TE + L+ VAT Sbjct: 117 YFPEVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVAT 176 Query: 173 DGHRLAVCSMPI----GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG 228 DGHRL++ S P GQ L S VI+P+KGV EL ++ + L N+ G Sbjct: 177 DGHRLSIASCPFKGNAGQEL-SKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRG 235 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN 288 D +LVDG FPDY RV+P + D+ + CD + R AILS+EKF+G+ L +SE+ Sbjct: 236 DSYMVMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISES 295 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 ++I+++NPE +A E +DV+Y G + FN Y+LDVL + E+V M D ++ Sbjct: 296 SIRISSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTETESVEMKFKDELAPSI 355 Query: 349 IEDAASQSAAYVVMPMRL 366 I S S V+MPMRL Sbjct: 356 ILPDKSDSFLAVIMPMRL 373 >UniRef50_Q0EVY9 DNA polymerase III subunit beta n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EVY9_9PROT Length = 366 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 202/367 (55%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+ R LL+ +Q+ + R T+PIL N+L++ +++T TDLE+ + + + Sbjct: 1 MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHID-G 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV A+K F+I R L ++++ + + SG SRF ++T PA ++P + Sbjct: 60 SVEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGFISIVSGSSRFRVNTRPADEYPAMA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEELRTVATDGHRLAV 179 + + ++ LP + +I AT F+M+ + R YL G LFE + + LR V TDGHRLA+ Sbjct: 120 EQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFELDDSQNLRLVTTDGHRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + Q+ + S IVP+K VIE+ ++ + + + I IR G TSKL+D Sbjct: 180 SEIRLQQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTSKLIDA 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFP Y+ V+P N Q R I++NE +RL S+ L I+A+N EQ Sbjct: 240 RFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISAHNSEQ 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EE+EE L Y G E+ IGFN Y+ D L A++ +V M L D +S V I + + Y Sbjct: 300 EESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRAPSVCMELKDELSPVLIRGEDDEQSRY 359 Query: 360 VVMPMRL 366 V+MPMR+ Sbjct: 360 VIMPMRI 366 >UniRef50_Q058G0 DNA polymerase III, b subunit n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q058G0_BUCCC Length = 368 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 204/368 (55%), Gaps = 2/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--A 58 M+F +++ ++++ + P PIL N+++++ + L LT ++LE+E+ A + Sbjct: 1 MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ G + +K +ICR + + A + ++ ++M + S F L+T+ +FP Sbjct: 61 FFILYKSGCVAISGKKILNICRNISKDAILHFKIINKKMRICILNSLFELNTMICTNFPI 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 +D+ + EF + + +K +I FS+A+ D+R LNG+L E + L V TDG+RL+ Sbjct: 121 FNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNNLYGVTTDGYRLS 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 V + I ++ + S+I+ +K ++EL R+++ + ++V I +N + + + + +K++D Sbjct: 181 VYKIAINLNIKNFSIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILLKTKILD 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FP+Y V+ K + LK++ ++ +IL N F+GV L +N+L IT+ N E Sbjct: 241 GNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLIITSKNQE 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E++ + + ++ NV Y+LD+LN L E + + +SS+QI+ + Sbjct: 301 DEKSYDSFIIDNKKIKISFHINVFYLLDILNVLDVEVITISFRIPISSIQIQSDKKKEIL 360 Query: 359 YVVMPMRL 366 Y++MP++L Sbjct: 361 YIIMPLKL 368 >UniRef50_Q5GSK7 DNA polymerase III beta clamp subunit n=11 Tax=cellular organisms RepID=Q5GSK7_WOLTR Length = 393 Score = 217 bits (552), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 120/367 (32%), Positives = 202/367 (55%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F + R LL L +VSG + R + IL + ++ G++ L TDL++ + A +A Sbjct: 29 MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 88 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNL 119 E G V A DI + LP ++ ++ + ++L+ G + FSL + P L Sbjct: 89 VLTE-GEVKVSAHTLHDIVKKLPADLDVNFEVNDQGKLLISYGNANFSLPNVVLNKLPVL 147 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + +FTL + L+ T+F+++ D RY LNG+ T+ + L VATDGHRL+ Sbjct: 148 EEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQFLYCVATDGHRLSC 207 Query: 180 CSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P Q++ S VI+PRK VIEL+++LD D + +++ I+ G +I SKL+D Sbjct: 208 VKKPKPQNINSEFGVIIPRKTVIELLKVLDDCD-EINIKLSDRKIKFTCGKYIIISKLID 266 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FPDY+ V+P + DK + L R +++ +++ + + + E L + +N+ E Sbjct: 267 GAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSNSQE 326 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +A E ++V Y+GA +EIGFN Y+LD L+ +K + L+DS S+ I D + Sbjct: 327 CSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIK-SKCKFSLSDSSSATVITDENDPNVL 385 Query: 359 YVVMPMR 365 Y+VMP+R Sbjct: 386 YIVMPVR 392 >UniRef50_A5FYG4 DNA polymerase III, beta subunit n=2 Tax=cellular organisms RepID=A5FYG4_ACICJ Length = 374 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 202/376 (53%), Gaps = 12/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +R LLK L V + R T+PIL N+LL V +G L++ TDLE+ ++ VA Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG--ERMLVRSGRSRFSLSTLPAADFPN 118 + G+ T PA ++I R P+ AEI + G + +R+GR L LP +FP Sbjct: 61 TMRD-GSVTAPAATLYEIVRRQPDNAEIELDHPGGDAPLALRAGRYATKLVVLPTDEFPK 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF---ETEGEE-LRTVATDG 174 LD + F +P ++ LI+ T+F+++ ++ RYYLNG+ E+EG LR VATDG Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVPVLRAVATDG 179 Query: 175 HRLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA P+ + VIVPRK V E+ ++LD + + + I+ + T Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 SKL+DG +PDY +V+P DK L A AR + +++E+ + V+L V + L ++ Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299 Query: 294 ANNPEQEEAEEILD---VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 A +P+Q A E LD V Y +EIGF Y+ DV +K + V D + + Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKGK-VEFCFADGAAPTLVR 358 Query: 351 DAASQSAAYVVMPMRL 366 A +SA +V+MPMR+ Sbjct: 359 AAGDESAIFVLMPMRV 374 >UniRef50_B4UTW9 p081 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW9_BP163 Length = 378 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 205/370 (55%), Gaps = 17/370 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + R L + L VS + R T+PIL +L L ADG L++TGTDL++ + A Sbjct: 21 MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDI-VATDTAAA 79 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA V A+ DI + G ++++ + +++V+SGRSRFSL LPAADFP+L Sbjct: 80 DVTEGGAVCVDAKLLSDIAK--KTGGDVSLSEDKGQLIVKSGRSRFSLPALPAADFPDLS 137 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGM---LFETEGEELRTVATDGHRL 177 + F + A L F+++ ++ R+YLNG+ L E +R VATDGHRL Sbjct: 138 GGEYTASFDMDLAA---LFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGHRL 194 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + VIVPRK V L + +RV + IR G+F+ TSKL+ Sbjct: 195 SRHQAAYPGEDAFKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTSKLI 248 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY+RV+P DK + G D ++QA +R +++S+E+ R V+L +E + K+ ++P Sbjct: 249 DGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAVSSP 308 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS-SVQIEDAASQS 356 E A + + V Y G ++IGFN +Y+ +++ ++ + L D S SV + A + Sbjct: 309 ETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPAGDITLALADGGSPSVFTSEKAPEL 368 Query: 357 AAYVVMPMRL 366 A V+MPMR+ Sbjct: 369 LA-VLMPMRV 377 >UniRef50_Q1V1G8 DNA polymerase III n=5 Tax=root RepID=Q1V1G8_PELUB Length = 370 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 210/370 (56%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V ++ L + L G + R TLPIL N+LL ++ L++T TDL++ + ++ V Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G TT + +DI R G +I + L + ++ V S +S F+L+ + A++FP Sbjct: 61 EVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDVSKLQVESEKSVFNLNCISASEFPLT 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF-ETEGEE---LRTVATDGH 175 D+ ++ EF++ + +L+ +FS+++ + R+YL+G+ F +T+ E+ L ATD H Sbjct: 121 DENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 R+++ + + Q + +I+P+K + +L +L+ D +++ + I+ + + I SK Sbjct: 181 RMSISKIRLDQQVDFEPIILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISK 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG+FP+Y +V+PKN K LE L + R A +S +K GV+ +S++ L ++ N Sbjct: 241 LIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVN 300 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 N + +E L V + ++EI FN Y++DV L + + + D+ S I+D Sbjct: 301 NTNSGDGKESLTVKF-DHDLEISFNSRYLIDVAAQLDGDKIEIFFNDTGSPALIKDPGDF 359 Query: 356 SAAYVVMPMR 365 + +VVMPM+ Sbjct: 360 DSIFVVMPMK 369 >UniRef50_C6XEX5 DNA polymerase III subunit beta n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XEX5_LIBAP Length = 385 Score = 213 bits (542), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 Query: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 Query: 350 --EDAASQ-------SAAYVVMPMRL 366 +D S+ +A YV+MPMR+ Sbjct: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 >UniRef50_Q1JZF2 DNA polymerase III, beta subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZF2_DESAC Length = 372 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 112/374 (29%), Positives = 219/374 (58%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVA 58 MK T ++ LLK L V G + + TLPIL N+LL+ T L LT TDLE+ + + Sbjct: 1 MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 + G T+ A+K ++I + L + AEI +++ E + + +G+++F++ L + +FP Sbjct: 61 -AEIISDGKITISAKKLYEIVKELAD-AEITLKVKENNWVEIINGKAKFNIVGLSSEEFP 118 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE----LRTVATD 173 + D Q++ ++ T+K +I+ T +++++ + ++ LNG+ +E + ++ V+TD Sbjct: 119 LITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVSTD 178 Query: 174 GHRLAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 GHRL++ + L VI P+KG+ EL +++D + +++ I NN ++ + Sbjct: 179 GHRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETTL 238 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 +L+DG FPDY+RV+P+ D + + ++L R ++L+NEK +G+ + +N++ + Sbjct: 239 VMRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEINV 298 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 T++NPE +A E + Y G ++IGFN Y++DV++ + +++R+ + D++S I Sbjct: 299 TSSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISNVVDKDIRIYIKDNMSPCLILPE 358 Query: 353 ASQSAAYVVMPMRL 366 + + V+MPMR+ Sbjct: 359 DTNNYLAVIMPMRI 372 >UniRef50_B9XEB7 DNA polymerase III, beta subunit n=3 Tax=Verrucomicrobia RepID=B9XEB7_9BACT Length = 369 Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 206/375 (54%), Gaps = 16/375 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 M T+ +E L+ LQ V + R TLPIL N+L++ L T TDL++ + V A Sbjct: 1 MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPN 118 V+ E GATTVP +K F I R L EI +++ E +RSG S + ++ L A +FP Sbjct: 61 VK--EGGATTVPVKKLFGIVREL-NNPEIEIEVDEKNTCSIRSGSSFYKINGLSADEFPP 117 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L ++ + + TLPQ +K +++ T F+++ + RY LNG+ + +L VATDG RLA Sbjct: 118 LPKFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEHKLTMVATDGRRLA 177 Query: 179 VCSMPIGQSLPSH-SVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGD-----FI 231 + + + S IVP K V EL R+L D G+ + ++ N + D + Sbjct: 178 LVDEEVDVTEKSQGEFIVPAKAVNELNRLLTDKGE--VEIRYSENQAAFTLKDEKGFSIL 235 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 SKL++G +P+YR+V+P + + + A RA I+++EK V+L S+N L Sbjct: 236 IISKLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNNLA 295 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ITAN+PE EA E L + Y G EM I FN YV+D LNAL + + + L D +S ++ Sbjct: 296 ITANSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALSNDEIFLELIDELSPGVVK- 354 Query: 352 AASQSAAYVVMPMRL 366 + YVVMPMRL Sbjct: 355 -INGPFLYVVMPMRL 368 >UniRef50_Q21QE8 DNA polymerase III, beta subunit n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QE8_RHOFD Length = 378 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 205/378 (54%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 K T + L LQ V+G + +L ILGN+LL +DG ++ GTDLE+E+ A + Sbjct: 3 FKLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDGRITAVGTDLEVEVNATQHV 62 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG-RSRFSLSTLPAADFPN 118 +TTV +RK DI + + + + E LV +G F LS LPA DFP Sbjct: 63 GSFTGALSTTVESRKLMDILQTMANDEPVTLASENPDHLVLTGANGTFKLSCLPADDFPR 122 Query: 119 LD---DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 ++ ++Q F + Q +K LIE T F+MA D+RYYL GM F EG L +DG Sbjct: 123 MEIAPNYQET--FRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVVEGGRLTVCTSDGF 180 Query: 176 RLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 R+A + + S+P+ VI+PRK V+EL R+ D+ + VQ+ +N R G F + Sbjct: 181 RVATDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQARIRFGALEFVT 240 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN----QL 290 KLV+G+FPD R V+P++ D + L A RAA++ ++K GVR + + L Sbjct: 241 KLVEGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRFILDHDLISGHL 300 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV--SSVQ 348 K+ ++N + E + + V YSG ++IGFNV Y+LD L ++ +++ + + ++ + Sbjct: 301 KVESSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLVLAFSHTLVPGAAL 360 Query: 349 IEDAASQSAAYVVMPMRL 366 + + Y++MPMR+ Sbjct: 361 MTLPSDDHFKYILMPMRI 378 >UniRef50_B5JPS7 DNA polymerase III, beta subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPS7_9BACT Length = 380 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 219/387 (56%), Gaps = 29/387 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+H LQQV +G + T+PIL N+L++ T+SLT T+L++ + AR+ Sbjct: 1 MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-GERMLVRSGRSRFSLSTLPAADFPNL 119 E GA T+P ++ I + LP +++ V+ ++ + SG S F + + +FP L Sbjct: 60 TIEEEGAVTLPVKRLATIVKELP-NSDVKVEASPSNQVKIASGGSNFKIMGISREEFPAL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEE-----LRTVATD 173 ++ + FT+ Q T+ +I++ ++ + + RY LNG+ F E EE L VATD Sbjct: 119 PEFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVATD 178 Query: 174 GHRLAVCS--MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIR------- 224 G RLA M +G+ + S S+I+P K V EL+R+LD G+N ++I N+ R Sbjct: 179 GRRLAKTDHEMEVGEGM-SGSLILPAKTVSELVRLLDKGEN---LKIAFNDRRVAFQIHT 234 Query: 225 -----AHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR 279 VGD SK+V+G +P+Y++V+PK + ++ +L Q+ RAA+++ +K Sbjct: 235 KDDSDGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSN 294 Query: 280 GVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMM 339 V++ +S N ++++A++P+ E+ E L + YSG ++++ FN +++D L AL + + Sbjct: 295 QVKIQISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKALTKDELFFE 354 Query: 340 LTDSVSSVQIEDAASQSAAYVVMPMRL 366 L D VS + +S V+MP+RL Sbjct: 355 LKDEVSPGVFK--TLESFLCVIMPVRL 379 >UniRef50_C1A3G7 DNA polymerase III beta subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3G7_GEMAT Length = 370 Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 206/371 (55%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ RE L + LQ V+ + + TLP+L NLL++ D + + TDL++ + V+ Sbjct: 1 MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNL 119 PGA T+PA+K +I R LP + + + GE R+ + GRS+F L LP +FP Sbjct: 60 DVETPGAITIPAKKLGEIARELPP-SPVKISASGEQRVTLECGRSKFKLLGLPRDEFPTF 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + + +++LI T F++++++ R LNG+L+E E +R VAT+GHRLA Sbjct: 119 PSVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREERMRMVATNGHRLAK 178 Query: 180 CSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 +P+ S P +IVP K +E +R L + L + G N++ ++LV+ Sbjct: 179 MELPVEASSAPPGDLIVPPKA-LEQIRRLFPAEEELEIARGDNHLGFRSPFTSVFTRLVE 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G +P+Y +V+PK+ D++ A L A R +++++++ +++ + LK + P+ Sbjct: 238 GPYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKFSVTTPD 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE-DAASQSA 357 EA + L + Y+G +++IGFN +Y+L++L + E VR+ + IE + A Sbjct: 298 LGEASDELPINYTGDQLDIGFNATYLLEILRFMPTEQVRLTFKAPERAATIEPEGWDDPA 357 Query: 358 AY--VVMPMRL 366 Y +VMP+RL Sbjct: 358 KYLCLVMPLRL 368 >UniRef50_Q6MRS0 DNA polymerase III, beta subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRS0_BDEBA Length = 368 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 205/370 (55%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +++ LL + + + R T+PIL N+LL+ TL + TDLE+ + ++ V Sbjct: 1 MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIK-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q H+ G V A+ FDI + L EG ++ E + ++ G+ + + A ++P Sbjct: 60 QVHQAGKVAVSAKSLFDIAKELSEGPITLIKKENNWLEIKQGKYTSKIVGISAEEYPIFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRLAV 179 + S+ + +K +I+ T +S++ + RY+LNG+ FE + + VATDGHR+++ Sbjct: 120 TYNSQAFIKIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQTGFKMVATDGHRMSL 179 Query: 180 CSMPIG--QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI-GSNNIRAHVGDFIFTSKL 236 + P + + VI+PRKG+ E+ ++L+ D + + + GS + H I +L Sbjct: 180 VNKPSEDIKVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKH-SSTILMIRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G++P+Y++ +P+ + + D + R ++L+N+K + V L +S +++I++NN Sbjct: 239 IEGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGRMEISSNN 298 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 PE +A+E ++V Y G E++IGFN Y+ D+L ++ + + L D +S + Q+ Sbjct: 299 PELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQDKIDFELNDHLSPGLMRPHNDQT 358 Query: 357 AAYVVMPMRL 366 VVMPMR+ Sbjct: 359 YTCVVMPMRI 368 >UniRef50_A7H676 DNA polymerase III, beta subunit n=6 Tax=Cystobacterineae RepID=A7H676_ANADF Length = 376 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/376 (33%), Positives = 204/376 (54%), Gaps = 10/376 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-L 59 M+ + L K L + G + + T+PIL ++LL+ G L ++ TDL++ + + Sbjct: 1 MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + GA V AR ++I R LPE + + VRSG S F + LPA DFP L Sbjct: 61 CEVLKEGALAVSARHLYEIVRALPEQQVTLKRAHNNYLEVRSGPSEFRIVGLPAEDFPAL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + +IE T F++++ + RY LNG+ FE E LR VATDGHRL++ Sbjct: 121 PRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRLVATDGHRLSL 180 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRML----DGGDNPLRVQIG--SNNIRAHVGDFIF 232 IG + VI+P+KG+ EL ++L + G + ++G N+ I Sbjct: 181 SERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRRPGVIL 240 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 + +L++G FPDYR+V+PK +K L G D + R ++LS++K V+L + + LK+ Sbjct: 241 SMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQGTLKV 300 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + NP+ EA+E + V Y+G ++IGFN Y++DVL +K V++ L D +S + Sbjct: 301 LSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKSAEVQLELADDLSPGVMRGG 360 Query: 353 ASQSAAY--VVMPMRL 366 + A + VVMPMR+ Sbjct: 361 DEKDAGFTAVVMPMRI 376 >UniRef50_B1ZXL9 DNA polymerase III, beta subunit n=2 Tax=Opitutaceae RepID=B1ZXL9_OPITP Length = 374 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/382 (32%), Positives = 211/382 (55%), Gaps = 25/382 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+H L QV +G + T+PIL N+L++ +SLT T+L++ + ++ Sbjct: 1 MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-GERMLVRSGRSRFSLSTLPAADFPNL 119 + E GA T+P ++ I R LP ++ V ++ + SG S F + + +FP L Sbjct: 60 EVKETGAVTLPVKRLATIVRELP-NVDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPPL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ E FTL Q+ + ++++ ++ + + RY LNG+ F + +L VATDG RLA+ Sbjct: 119 PEFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYFNFKDGKLSLVATDGRRLAL 178 Query: 180 CSMPIGQSLPSHS---VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAH---------- 226 S + +P+ S +I+P K V ELMR+LD G+ +++I N+ RA Sbjct: 179 VSKEL--EVPADSAGAIILPAKTVSELMRLLDKGE---KLKINFNDRRAAFQIATDKDSS 233 Query: 227 --VGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 V SK+V+G +P+Y++V+PK + ++ +L Q RAA++ +EK V++ Sbjct: 234 GLVESVYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIK 293 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344 +S N L+ITA +P+ EA E + + YSG E+++ FN ++V+D L AL + + L D V Sbjct: 294 LSSNLLEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRALTKDEIFFELKDDV 353 Query: 345 SSVQIEDAASQSAAYVVMPMRL 366 S + S V+MP+RL Sbjct: 354 SPGVFKTL--DSFLCVIMPVRL 373 >UniRef50_B2KAM5 DNA polymerase III, beta subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAM5_ELUMP Length = 369 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/370 (30%), Positives = 194/370 (52%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E L+ L V + R TLPIL N L++ +G + L TD+EM + + Sbjct: 1 MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+ T+P ++ DI + LP EI + + E ++ ++SG+S+F + P +++P + Sbjct: 60 EILEEGSVTIPLKEVSDILKNLPNDKEINLTVGEDNKVHIKSGKSKFWVIGTPKSEYPLI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + L ++ ++E T FS + Q+ RY LNG+L+ G + VATDG RLA+ Sbjct: 120 PEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWVKTGNKFEVVATDGRRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLD----GGDNPLRVQIGSNNIRAHVGDFIFTSK 235 I +I+P K + EL+R D+ L + + SN + ++ + + S+ Sbjct: 180 AVDTIESDTKDFKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETTYISR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L++G FP+Y +V+P + + + RA++ +NE V+ ++ N LKIT+N Sbjct: 240 LIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLKITSN 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + + ++E + V Y+ EI FN YVLDVL + E V ++ V IE+ + Sbjct: 300 SQKMDFSDE-MKVEYTAEPFEISFNPQYVLDVLKNISTEKVEFSFINAAQPVLIEEINNT 358 Query: 356 SAAYVVMPMR 365 YV+MP+R Sbjct: 359 KFKYVIMPVR 368 >UniRef50_C1F9N7 DNA polymerase III, beta subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9N7_ACIC5 Length = 373 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 115/377 (30%), Positives = 214/377 (56%), Gaps = 15/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +V R+ LL+ L + + T+PIL N L++ + L++T TDL+ M A Sbjct: 1 MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + +PG+ T+PARK +D + LPEG +++++L + + +RSGRS + + A+FP + Sbjct: 60 KVKKPGSCTIPARKLYDYVKLLPEG-DVSIKLMDNHWVQIRSGRSNTKMVGMARANFPQV 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ S +P A+++ LI T F++++++ RY LNG L + E + VATDGHRLA Sbjct: 119 PEFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAESIAMVATDGHRLAH 178 Query: 180 CSMPIGQSLPS----HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN--IRAHVGDFIFT 233 G++ PS ++PRK + EL +L G + V+ ++ + +G + T Sbjct: 179 IEKS-GENFPSMGAEKKTLIPRKALSELQSLL-GNTDAESVEFADDDSTLFFRIGHRVLT 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 S+ + G+FP+Y VLP++ +K + L ++ + ++E+ +++ + +N+LKI+ Sbjct: 237 SRKLTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKIS 296 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQIEDA 352 A++ + E+E++++ YS + +GFN +Y+LD L A+ VR+ D+ S+ Q+ Sbjct: 297 ASSTDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGNTGEVRLEFKDAQSAGQMRPE 356 Query: 353 ASQ---SAAYVVMPMRL 366 Q Y++MPMR+ Sbjct: 357 DGQEDYKYRYIIMPMRI 373 >UniRef50_D1N691 DNA polymerase III, beta subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N691_9BACT Length = 364 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 116/367 (31%), Positives = 199/367 (54%), Gaps = 7/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV RE L K LQ+V +G R LP+LGN+++Q +G L+LT TDLE+ + +V V Sbjct: 1 MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 E G TT PARK + G G ++ +++ + + ++ G S F+L LPAADFP Sbjct: 61 V-EEAGVTTAPARKLASLV-GCFVGTDVVFEVDDKDHIKIKCGTSHFTLLGLPAADFPAA 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 +++++ E + ++ KR+I + ++++ D R L G+L + VATDG RLA+ Sbjct: 119 VEFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTLVATDGKRLAM 178 Query: 180 C-SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P I+P K E R+L+G D + +++G G F T+KL++ Sbjct: 179 QEKTPEAIEGGDGDAIIPLKAASEARRLLEG-DAVMTIRLGDKQCTFVAGGFELTTKLIE 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G +P+YR+V+P + + +E + +++ ++ + L NQL + A++ E Sbjct: 238 GTYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQASSAE 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E +++++ + G E+ FN +Y+ D L + +RM + D ++ V IE S+ Sbjct: 298 VGEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADADKIRMKINDPLNPVAIE--GSEGFL 355 Query: 359 YVVMPMR 365 YV+MP+R Sbjct: 356 YVIMPIR 362 >UniRef50_Q02D48 DNA polymerase III, beta subunit n=2 Tax=Acidobacteria RepID=Q02D48_SOLUE Length = 372 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 203/376 (53%), Gaps = 14/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV + L++ L G + + T+PIL N+LL+ AD ++LT TDLE+ + Sbjct: 1 MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCPAR 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G+ TVPARK D R LPEG L+ + SGRSR ++ + FP L Sbjct: 61 VKKE-GSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGRSRTRIAGMSRESFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA-V 179 + +P T+ +I T F+++ ++ R+ LNG L E L VATDGHRLA V Sbjct: 120 QMPEPIA-QVPVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTMVATDGHRLAYV 178 Query: 180 CSMPI--GQSLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNN-IRAHVGDFIFTSK 235 + P G + +VP+K + EL ++ D G+ + + G +N + +G + ++ Sbjct: 179 QAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRLLITR 238 Query: 236 LVDGRFPDYRRVLPKNPD--KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 + G FPDY RVLPK+ LE G ++ A R A ++E+ R +R+ + ++++ Sbjct: 239 KLTGNFPDYERVLPKDHQFMAKLEKGE--IRSAIERVAQFADERSRAIRVQFNSGEVRVF 296 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE--- 350 +++ E E+EE + Y+G ++EIGFN Y+LD L A+ ++V L D S+ ++ Sbjct: 297 SSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAISQDHVAFELKDQKSAGELRPAG 356 Query: 351 DAASQSAAYVVMPMRL 366 DA + YVVMPMR+ Sbjct: 357 DAIADQYRYVVMPMRI 372 >UniRef50_A9D4N4 DNA polymerase III, beta chain protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4N4_9RHIZ Length = 385 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 202/384 (52%), Gaps = 21/384 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ-VADGTLSLTGTDLE-MEMVARVA 58 T R LL ++ G + R T+P+L NLLL+ AD L ++GTDL+ M VA Sbjct: 5 FSLTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGLRVSGTDLDVMTTVATGL 64 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFP 117 +P + T+PA DI R LP+ AE++++ +G +M + SGRSRF+L TLP AD+P Sbjct: 65 DAEPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDGSGQMTLTSGRSRFNLQTLPGADWP 124 Query: 118 NLDDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 L + + F +P A + A F+++ ++ RYYLNG+ L TVATDGHR Sbjct: 125 RLQEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMHAIDNRLVTVATDGHR 184 Query: 177 L-------AVCSMPIGQSLPSHSVIVPRK--GVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 L AV MP ++P +I+PRK G++ D L + + N I + Sbjct: 185 LARAVYSAAVGVMPAADAMP--GIIIPRKTVGLVAKALAAAAKDATLAIAVSENMISFEL 242 Query: 228 GDFIFTSKLVDGRFPDYRRVLP-KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 G SKL+DG FPDY RV+P NP+ LL QA R +I+S+E+ R V++ Sbjct: 243 GATRIASKLIDGTFPDYERVIPIANPNSWRFDVAALL-QATERVSIISSERGRAVKMAWG 301 Query: 287 ENQLKITANNPEQEEAEEILDVTY-SGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSV 344 + +T NP+ E ++ + V +G E+EIGFN Y+ D+L + K +V + Sbjct: 302 RESIDLTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHMSKSGSVHLNTGGDP 361 Query: 345 SSVQIEDAASQSAA--YVVMPMRL 366 + + A A +V+MPMR+ Sbjct: 362 ARFEPVHADDDEIAMTFVLMPMRV 385 >UniRef50_Q1RIS7 DNA polymerase III subunit beta n=15 Tax=Rickettsia RepID=DPO3B_RICBR Length = 379 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 114/379 (30%), Positives = 194/379 (51%), Gaps = 14/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 +K VE + L++ L S + R + L N+ L DG L L+ T++++ + ++ V Sbjct: 2 LKVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKIG-V 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q G TV + DI + LP+ L + + RF+L TLP FP +D Sbjct: 61 QVVSEGELTVSTKTLNDIVKKLPDSELTLTDLGTTGLEITGKNCRFNLFTLPVESFPVMD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E F + A ++IE+T+FS++ + RY LNG+ + E +TDGHRL+V Sbjct: 121 NINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVKDSEFYAASTDGHRLSVS 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAHVG-DFIFTSKL 236 S+ + + + VI+P+K E+++++ N + + + SN I+ + I SKL Sbjct: 181 SVVLAEKIEDFGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIMLSKL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +DG FPDY +P+N L + R AI++ EKFR V+L +S L+I+A Sbjct: 241 IDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEISAIG 300 Query: 297 PEQEEAEEILDVT--------YSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 + A+E+++ + YSG ++IGFN Y+ DVL A+K + V + + + V Sbjct: 301 EARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFSSVSAPV 360 Query: 348 QIEDAASQSAAYVVMPMRL 366 I+ S +VVMP+++ Sbjct: 361 LIKFPESPKDIFVVMPVKV 379 >UniRef50_D0LFL0 DNA polymerase III, beta subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL0_HALO1 Length = 365 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 197/369 (53%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 M+F +++ LK L+ + T+P+L N+LL+ + L + TDL + + A + Sbjct: 1 MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G TV A+ FDI +PE + + + + G+ ++ L +P DFP + Sbjct: 61 KNSAE-GGLTVGAKALFDIVANMPEDDVVLRRTDNNWAEISCGKVKYRLVGMPDRDFPKV 119 Query: 120 DDWQSEVEFTLPQAT-MKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + SE EF +A M+ +I+ T FS+ + + R++LNG+LFE++G R V+TDGHRL+ Sbjct: 120 PE-HSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARMVSTDGHRLS 178 Query: 179 VCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + G + +I+P+KG+ E+ ++L+ G V + + I H I KL+ Sbjct: 179 KVERTLEGAPALTAGIIIPKKGIGEIKKLLESGGKAA-VAVKTPYIFVHADSMILAVKLI 237 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 + +FP Y +V+PK + + L A RA ++S+E RGV+ VS + L IT++NP Sbjct: 238 ESQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSSET-RGVKFNVSPDSLVITSDNP 296 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + E E L+ Y G E+ IGFN YV+D+L+ + + V + L + + + + Sbjct: 297 DIGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMATDQVTLELNGELDPGLLRPFSDDNY 356 Query: 358 AYVVMPMRL 366 VVMPMR+ Sbjct: 357 LGVVMPMRI 365 >UniRef50_A1AV49 DNA polymerase III, beta subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A1AV49_RUTMC Length = 367 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/369 (31%), Positives = 198/369 (53%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + + LL PLQ V + + LPIL ++L+Q+ D L+LT TD+E+E+ A ++ Sbjct: 1 MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRAS-QII 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E + T+ A+ DI + L E I +E ++ ++ ++ F L+T DFP+L Sbjct: 60 KNQEEISFTIYAKDLIDIIKKLSEDIIIEFIIESSKIYIKVNKNSFELNTSNHQDFPSLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + +K LIE T FSM QD+R YLNG+ E + + VATDGHRL++ Sbjct: 120 KIKNSDIIKIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNSIVVVATDGHRLSIG 179 Query: 181 SMPIGQSLPS-HSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + +L + SVI+PRK V EL ++L+ G + + + N + S+L+D Sbjct: 180 KVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLISNNTTIISRLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FP+Y +VLP N + + + +A+I E+ +GV+L ++L I + + E Sbjct: 240 GNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFKNSKLHIFS-HSE 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS-SVQIEDAASQSA 357 + +A+ +++ E+EI FN++Y++ +L L + M++ D S S + Sbjct: 299 RGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEINMIVPDGKSQSCLLSSMNDDIY 358 Query: 358 AYVVMPMRL 366 YVVMPMR+ Sbjct: 359 QYVVMPMRI 367 >UniRef50_A0LLR4 DNA polymerase III, beta subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLR4_SYNFM Length = 369 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 111/369 (30%), Positives = 190/369 (51%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG-TLSLTGTDLEMEMVARVAL 59 MK +E+ +L++ LQ+V + ++P+L N+L+ ++ T+ + TDLE+ + + Sbjct: 1 MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQTG- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 Q PG++TV ARK F+I R LP+ + L +M + SGR+RF LST+P DFP L Sbjct: 60 GQVETPGSSTVSARKLFEIVRELPQPEVLLEGLPNNKMQILSGRARFELSTIPGEDFPQL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRLA 178 + ++ + A +KR + T S+ + + + G E+ R V++DGHRL+ Sbjct: 120 NFYRETELVKVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNEDSYRFVSSDGHRLS 179 Query: 179 VCSMP---IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 C +P G +I+PRKGV E++RML+ + + + + + + + Sbjct: 180 YCEVPKEAFGTLDIREGLIIPRKGVQEILRMLEK-EEEVVLGVHEKYVVLRTPSTFLSVQ 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D FP+Y+ ++P+ + + A R++ILSN +R VR +++ L++ A Sbjct: 239 LLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKGVLELEAG 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 NPE A E LDV Y G + + FN+ Y+L+ + AL VR D + Sbjct: 299 NPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWVDQFHGGVFVGSEDP 358 Query: 356 SAAYVVMPM 364 +VMPM Sbjct: 359 GFLSLVMPM 367 >UniRef50_C9KQB1 DNA polymerase III, beta subunit n=2 Tax=Veillonellaceae RepID=C9KQB1_9FIRM Length = 370 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 109/369 (29%), Positives = 190/369 (51%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T + L LQ V+ + +P PIL + L+ TL L T+ E+ +VAR+ Sbjct: 1 MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG TV R F ++ R LP E ++A + + + + S ++F+L ++ AA+FP + Sbjct: 60 DIEEPGELTVGGRYFQEVVRKLPGENVKLACTADEKIVHIESAMAKFTLLSMNAAEFPTI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + ++F + ++ LI+ T F+ + + R G E ++ AT+ HRL+V Sbjct: 120 QPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTENKVTMAATNTHRLSV 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS--NNIRAHVGDFIFTSKLV 237 S QS+ + VI+P + + EL+ + D P V+I N I + TS+L+ Sbjct: 180 KSETFDQSIGNIKVIIPSRILQELLHNM-SSDIPTDVKISCSYNQISFSFDNLYMTSRLI 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANN 296 +G+FP+YR V+P + H++ A R ++++ + ++L ++NQ+ IT+NN Sbjct: 239 EGQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHITSNN 298 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 PE AEE + G ++ I FN Y++DVL + + R+ L +S I++ S Sbjct: 299 PEIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDSKTCRIGLNQPLSPASIQEEDDDS 358 Query: 357 AAYVVMPMR 365 Y+V P+R Sbjct: 359 FVYIVTPVR 367 >UniRef50_B9KGQ1 DNA polymerase III beta chain (DnaN) n=12 Tax=Anaplasmataceae RepID=B9KGQ1_ANAMF Length = 379 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/373 (29%), Positives = 198/373 (53%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 ++ ++ RE LL+ L VS + R ++ +L + ++ DG + L+ TDL++ + A V Sbjct: 12 LECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNAS 71 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 H+ G A+ +DI R L + ++ R+LV G ++F L + FP ++ Sbjct: 72 VVHK-GVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVECGNAKFFLHVVAPEKFPAIE 130 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + + + L+ T+FSM+ ++ RY L G+ + L VATDGHRL++ Sbjct: 131 GGEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAEDMLCCVATDGHRLSLA 190 Query: 181 SMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAHVGDFIFTSKL 236 + + L P VIVPRK V EL++++ GG + + V I I + SK+ Sbjct: 191 KVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSKV 250 Query: 237 VDGRFPDYRRVLPKNPDKHLEA-GCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 VDG FPDY ++P+ + C LL A R +++ +K + ++L + +L +++ Sbjct: 251 VDGVFPDYLSIIPQERGASVSMDACSLL-SAVDRVSVVVFDKVKAIKLSFASGRLTLSSA 309 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALK--CENVRMMLTDSVSSVQIEDAA 353 + +Q +A E L+V Y G E+ IG N Y+++VL +K CE ++ D ++V I+D Sbjct: 310 SSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGACE---VVFQDGNTAVLIQDKE 366 Query: 354 SQSAAYVVMPMRL 366 + +++MPMR+ Sbjct: 367 PGGSMHIIMPMRI 379 >UniRef50_A8DJY7 DNA polymerase III beta subunit n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJY7_9BACT Length = 391 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 199/394 (50%), Gaps = 33/394 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ------VADGTLSLTGTDLEMEMV 54 M+F+V + LLK L ++ + + T+PIL N+LL A L+L GTDL+ + Sbjct: 1 MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPA 113 H G +PAR+ DI R LP+ A+I + +G M + RSRF L + Sbjct: 61 TSCPATIRHS-GTALLPARRLLDIVRNLPD-ADIHFKSDGSGNMNITCERSRFRLFSPAP 118 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE------- 166 +P+L + + + ++P M+ +I F+ + ++ RY LNG+ EG Sbjct: 119 EGYPSLPETPA-LPLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDASG 177 Query: 167 -LRTVATDGHRLAVCSMP----IGQSLPSH------SVIVPRKGVIELMRMLDGGDNPLR 215 LR VATDGHRLA+ P + SLP+ S ++P+K + E+ R L Sbjct: 178 LLRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIAR-LAADTTATE 236 Query: 216 VQIGSNN--IRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL 273 + G ++ + +G +F S+L+ G+FP+Y V+P+N + + + L AF R ++ Sbjct: 237 IAFGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGVV 296 Query: 274 SNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC 333 ++E V+L+ +E +++I + +PE EA E L V Y G + I FNV+Y++D L Sbjct: 297 ADETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAHS 356 Query: 334 ENVRMMLTDSVSSVQIE--DAASQSAAYVVMPMR 365 R D ++ +Q+ D YVVMPMR Sbjct: 357 TQTRFEFKDEITQIQMRPVDGDGYDYRYVVMPMR 390 >UniRef50_B2UQB4 DNA polymerase III, beta subunit n=2 Tax=Verrucomicrobiaceae RepID=B2UQB4_AKKM8 Length = 366 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/373 (31%), Positives = 197/373 (52%), Gaps = 18/373 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ ++ L L+QV+ + + TLPIL N+ ++ +G + T TDL++ + V Sbjct: 1 MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVPAN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 E G T+PA+K I LPE AE+ V + + + V GRS+F L+ LPA +FP L Sbjct: 61 VLRE-GTVTLPAKKLVSIISELPE-AEVQVDVNQRNQAAVECGRSQFKLNGLPADEFPEL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + Q ++ I T+++++ RY LNG+ ++ VATDG RLA+ Sbjct: 119 PSFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGISLSFRNGKMTLVATDGRRLAL 178 Query: 180 CS----MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 P Q L + I+P K V EL R+LD + ++ N + D + SK Sbjct: 179 AETALEFPEEQQLDA---ILPTKAVGELRRLLDEVGT-VTIRFTRNQAAFEINDTLLISK 234 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG +P+YR+V+P + + +E C L + R ++LS +K ++L EN+L++ ++ Sbjct: 235 LIDGNYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVASS 294 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV-RMMLTDSVSS--VQIEDA 352 EA E + +TYSG + I FN + + L + + V + L D +S ++I D Sbjct: 295 AEGVGEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTVITLNLIDEMSPGVLKIGD- 353 Query: 353 ASQSAAYVVMPMR 365 YV+MPMR Sbjct: 354 ---EFLYVLMPMR 363 >UniRef50_Q0PQ91 DNA polymerase III beta-subunit DnaC (Fragment) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQ91_9GAMM Length = 188 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 125/191 (65%), Gaps = 4/191 (2%) Query: 146 MAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHS-VIVPRKGVIELM 204 MA QDVRYYLNG+L E ++TVATDGHRLA + ++ + +I+PRK +IEL Sbjct: 1 MAQQDVRYYLNGLLLEISNGIIKTVATDGHRLAFSQIKAIENYELKTQLIIPRKAIIELY 60 Query: 205 RMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLK 264 R+LD +N +R ++ SN +R H+ IFTSKL+DG FPDY +V+PKN + L LK Sbjct: 61 RLLDESENTIRFEVSSNYVRVHLDRTIFTSKLIDGVFPDYEKVIPKNNENKLVMDKSELK 120 Query: 265 QAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYV 324 ++ RA+ILSNEK++G++L + E++++I ANNPEQEEA+ +D+ YS ++ F Sbjct: 121 KSLRRASILSNEKYKGIKLEIKEDRVQIIANNPEQEEAKIEIDLDYSRKGIKHRFKCKL- 179 Query: 325 LDVLNALKCEN 335 + KC N Sbjct: 180 --SVRCFKCNN 188 >UniRef50_A5EX08 DNA polymerase III, beta subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX08_DICNV Length = 414 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 202/414 (48%), Gaps = 48/414 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + ++ L K L ++ + + TL IL ++ L++ + L+L TD E+ + ++ ++ Sbjct: 1 MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 GA T+P KF+ + + +G I +L ++ + +G++ L+TLPA DFP Sbjct: 61 NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQQFHIHAGKTIVKLATLPAKDFPIPL 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRLA 178 D +L + L+ ++++A+QD R YLNG+L +G L V+TDGHRLA Sbjct: 121 DNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGHRLA 180 Query: 179 VCSMPIGQSLPSH-SVIVPRKGVIELMRM--LDGGDN----------------------- 212 + +++ S+ IVP K V EL++ LD +N Sbjct: 181 CAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNEQID 240 Query: 213 -------------------PLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 253 P+ + + +G + F+++L+DG++P YR+V+P + Sbjct: 241 ILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPLQQE 300 Query: 254 KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGA 313 + L A RA +L ++ GVRL+ + L +TA N E E E L++ SG Sbjct: 301 NPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIINSGN 360 Query: 314 -EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +EIG NV+Y++DVL L+ E V++ L + + + +V+MPMR+ Sbjct: 361 LTLEIGLNVNYLIDVLMHLEGETVQLHLENGEQACLLMSKDEPDVRHVIMPMRI 414 >UniRef50_O84078 DNA polymerase III subunit beta n=14 Tax=Chlamydiales RepID=DPO3B_CHLTR Length = 416 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/373 (31%), Positives = 188/373 (50%), Gaps = 17/373 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R L +++V + +P+L ++L++ + L T TDL + V Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRC-VVKA 109 Query: 61 QPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + +E G+ T+P+R+FF + R L E E+A GE + SG S F L ++ DFP L Sbjct: 110 KVYESGSVTIPSRRFFQLIRELTEANIEVAAH-SGEMATITSGSSCFRLLSMGKEDFPML 168 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D Q+ + FTL +K + + T F+++ ++ RY L G+L + V TDG RLA Sbjct: 169 PDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIANGTMTVVGTDGKRLAK 228 Query: 180 CSMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I PS S I+P K V E++RM D + + I G+ + +KL+ Sbjct: 229 IDTEISLD-PSFSGDYIIPIKAVEEIIRM-SSEDVQSTIFLDQTKIAVECGNTLLVTKLL 286 Query: 238 DGRFPDYRRVLPKNP----DKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 G FPD+ V+ + D H E LLKQ A+ +NE V+ S +L +T Sbjct: 287 SGEFPDFSPVISTHSSVQLDLHREELISLLKQ----VALFTNESSHSVKFSFSPGELTLT 342 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 AN + E + + V Y+G +EI FN + LD+L + E V++ ++DS + I D Sbjct: 343 ANCTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKHSRDELVQLGISDSYNPGIITD-- 400 Query: 354 SQSAAYVVMPMRL 366 S + +V+MPMRL Sbjct: 401 STRSLFVIMPMRL 413 >UniRef50_B1GZ05 DNA polymerase III beta subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZ05_UNCTG Length = 373 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 189/374 (50%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK E+E L++ +Q VS + TLP L N+L + + L+ TDLE+ + + Sbjct: 1 MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIK-G 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G T+P+++F +I + L EI ++ E ++ ++SG+S+F+L + ++P + Sbjct: 60 EITEDGGITIPSKRFANIIKELSTDDEIEIKADETNQINIKSGKSKFNLMGISKTEYPVI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + FT+ + +++ F+ + RY LNG+ F +L VATDG RLA Sbjct: 120 PEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFILGDSKLTMVATDGRRLAY 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I Q+ IVP K V +++R+L D +R+ I N I A + D S L+ Sbjct: 180 AKTNITQAEVKGKAIVPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLLSTLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAI-----LSNEKFRGVRLYVSENQLKI 292 +G FP+Y +V+PK D ++ A + A+ LS+++ V+ Y S++ LKI Sbjct: 240 EGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQDLLKI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A++ E L++ Y EI FN ++ ++ ++ + T+S++ I Sbjct: 300 SASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSIDEYSAIFEFTNSLNPAVIYPE 359 Query: 353 ASQSAAYVVMPMRL 366 ++ VVMPMR+ Sbjct: 360 TDENYLCVVMPMRV 373 >UniRef50_Q2LYA2 DNA polymerase III, beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYA2_SYNAS Length = 372 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/374 (29%), Positives = 195/374 (52%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++R+ L +Q+ G + + T+PILGNLLL+ D + + TD E+ +VA Sbjct: 1 MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 Q GA T+ A+K F++ R + +G I + +++ + S ++ + + + A +FP + Sbjct: 60 QIISSGAITLSAKKLFEMIREI-QGDSIHFSCDDHDQITLSSQKAVYRIPGISADEFPAV 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE-GEE---LRTVATDGH 175 ++ + +P + +K LI F++++ + R L G L E E GE+ LR VATDGH Sbjct: 119 AYDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDGH 178 Query: 176 RLAVCSMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 RLA I + P +I+PRKG+ E+ +++D + + + + Sbjct: 179 RLARSYEVIEGNSPFTLEKGIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTANTLL 238 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 L+D +PDY RV+P + DLL R ++S E++ GV L ++ N++ + Sbjct: 239 KVSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNRMIM 298 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + NP+ EA + L+V Y G E+++GFNV Y++D + ++ E V + + I Sbjct: 299 NSTNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIREEEVLFDIGSFMKPSMIMPV 358 Query: 353 ASQSAAYVVMPMRL 366 + VVMP++L Sbjct: 359 HNDRFLCVVMPLKL 372 >UniRef50_B5YGU0 DNA polymerase III, beta subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGU0_THEYD Length = 368 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/377 (28%), Positives = 190/377 (50%), Gaps = 20/377 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M ++++ + + L ++ + + +P+L + L+ V + + + TDLE A+ Sbjct: 1 MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLE------TAVK 54 Query: 61 QPHEP-----GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 QP E G +PARKF++I + L E EI L + + ++SGRS F L++L ++ Sbjct: 55 QPLEAEVLEIGKACIPARKFYEIVKELDEDIEI--MLLEQWIKIQSGRSNFRLASLDPSE 112 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEELRTVATDG 174 FP + L + + IE T ++ D RY LNG+LF+ E E V TDG Sbjct: 113 FPVWPQIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQIKEPAEFNVVGTDG 172 Query: 175 HRLA---VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 HRLA I VI+ +K + EL + L + + + IG ++ + Sbjct: 173 HRLAHFKATVEDISSIEGEKKVILSKKSLNELRKFLSDTET-VSIHIGKTHVMCEIDGIN 231 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 F +++++G +PDY V+P++ DK + L + R ++LS E+ V+ ++ L Sbjct: 232 FLTRMIEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLI 291 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 I++++PE EA + L V Y G IGFN Y+++ L + + ++ +++ +V I D Sbjct: 292 ISSSDPEIGEARDELTVDYQGEPFIIGFNARYLIEALERITSDKAKITMSEPDKAVYITD 351 Query: 352 AASQSAAY--VVMPMRL 366 + S Y VVMP+RL Sbjct: 352 GEAASFVYECVVMPLRL 368 >UniRef50_B8FM62 DNA polymerase III, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM62_DESAA Length = 376 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 193/384 (50%), Gaps = 26/384 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 M+F++ +E L + +V G G + T PI N+L+ T++L TDLE+ A Sbjct: 1 MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYPAT 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 V+ E G T+P +K F+I R P GA LE + + + ++ + + DFP L Sbjct: 61 VE--EEGTITIPGKKLFEIVREFPHGAIDVRDLENGWVQIFKDKVQYKIVGMDPNDFPKL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFS--MAHQDVRYYLNGMLFET----EGEELRTVATD 173 + + F L +IE T S M+ ++ R +L G+ E E LR V+TD Sbjct: 119 PEVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVSTD 178 Query: 174 GHRLA-VCSMPIGQSLP-----SHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSNNIRAH 226 G+RLA V +P P + VI+P+K + E++R+ +GG L VQ I+ Sbjct: 179 GNRLARVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRVSEGGGKISLGVQKNYFVIQKE 238 Query: 227 VGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFA----RAAILSNEKFRGVR 282 I +LV+G +PDY V+P + LE ++ KQ F R +IL +E++R VR Sbjct: 239 AETII--GRLVEGEYPDYNLVIPND----LETFFEIEKQPFVSILKRMSILCSERYRAVR 292 Query: 283 LYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD 342 V +L+++ NNPE ++ E + + ++G E FN + +D LN +K + +++ + D Sbjct: 293 FKVDPQRLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKSDMIKVNILD 352 Query: 343 SVSSVQIEDAASQSAAYVVMPMRL 366 S +E + V+MPMR+ Sbjct: 353 SSKPCILEGSEDPRYLSVIMPMRM 376 >UniRef50_C4V1P5 DNA polymerase III beta chain n=2 Tax=Selenomonas RepID=C4V1P5_9FIRM Length = 380 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/381 (28%), Positives = 187/381 (49%), Gaps = 19/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T+ + L+ LQ VS L +P PIL + + +G L L T+ E+ + + Sbjct: 1 MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML--VRSGRSRFSLSTLPAADFPN 118 + G +P + + R LP E+++ E L + SG +RF+L T+ DFP Sbjct: 60 EIRSTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGLAEICSGTARFTLRTMEVTDFPV 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSM---AHQDVRYYLNGMLFETEGEELRTVATDGH 175 L + FT+ + RL++ + F+ +D R G E +G ++ AT+ H Sbjct: 119 LHRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVDGHKVTFAATNVH 178 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS--NNIRAHVGDFIFT 233 RLAV S + +I+P + + E+ R + D P V I N I + T Sbjct: 179 RLAVKSESLETEAGQICIIIPARFLEEVTRTM-TSDVPSDVNISCTYNQISISFDNIYMT 237 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDL--LKQAFARAAILS-NEKFRGVRLYVSENQL 290 S+L++G FPDYRRV+P++ + + D+ A RA++++ +++ V+L ++ + Sbjct: 238 SRLIEGTFPDYRRVIPQDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFADGTM 297 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS------V 344 +I++N+PE EAEE + G ++ I FN SY++D + +L + + L S + Sbjct: 298 RISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCILSLQGSNEQGVNL 357 Query: 345 SSVQIEDAASQSAAYVVMPMR 365 S + I + A + YVV P+R Sbjct: 358 SPITIREEADPNYIYVVTPVR 378 >UniRef50_Q67TK6 DNA polymerase III beta subunit n=1 Tax=Symbiobacterium thermophilum RepID=Q67TK6_SYMTH Length = 368 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/372 (29%), Positives = 196/372 (52%), Gaps = 15/372 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E L L V+ + + T+P+L + L G L++ TD+E+ + A V Sbjct: 1 MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEA----V 56 Query: 61 QPHE---PGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 P E G T +PAR F D+ R +P G E++V +R GRS++ + A F Sbjct: 57 TPCEVISEGETVLPARYFADLIRRIPYGNIELSVDYHNHVATLRWGRSQYVIHGFAADQF 116 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P L D FT+ Q+ ++ L+ T F+ H + + +L G+LF+ + L ATDG R Sbjct: 117 PTLPDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKLRDDLLTGTATDGIR 176 Query: 177 LAVCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTS 234 +A + S SVI+P + + E+ R+L G D+ + V + +N + +G+ S Sbjct: 177 IAYAEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVIS 236 Query: 235 KLVDGRFPDYRRVLPKN-PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 +L++G++PD R++P++ P + + G + + +A RA +++ + V++ +++ IT Sbjct: 237 RLLEGQYPDVMRLVPQHYPTEAVLPGAEFM-EALERATLITKDG--AVKISFQTDKVTIT 293 Query: 294 ANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +N PE + E L VT +G ++IGFN Y+LD L L+ + R + S + ++ A Sbjct: 294 SNTPEVGQVYEELAVTSMAGDPLDIGFNARYLLDFLKVLEEKQFRFQCSGSRNPARLMPA 353 Query: 353 ASQSAAYVVMPM 364 S YVV+P+ Sbjct: 354 DSSQFLYVVLPL 365 >UniRef50_D1PRN1 DNA polymerase III, beta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN1_9FIRM Length = 369 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 186/368 (50%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF E+ L ++ VS + R +P+L + L+ L+LTG D+EM + + Sbjct: 1 MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIE-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNL 119 PG T + A+ + +P G ++ ++L E + ++ G + F + L A+D+P+L Sbjct: 60 NVLVPGETVLEAKLLLSMVSRMPAG-DVRIELTDEGQAIISGGVAEFEIPALNASDYPSL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ T+P + M+ LIE T ++++ D + G LF E L VA DG+RLA+ Sbjct: 119 PVTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVIEPGSLTIVALDGYRLAI 178 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + +I+P K + EL++++ G D+P+++ + + S+L++G Sbjct: 179 IQRDV-ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMSRLIEG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITANNPE 298 F +Y V+PK+ + C RA+++ E+ + +R+ +E+++ + P Sbjct: 238 DFLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVRCQTPL 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + +E V +G +EIGFN Y+LD + KCE + + + +S V+I + Sbjct: 298 GKVVDEFPPVAMTGDPVEIGFNNRYLLDAMRYSKCERMVLEINGPLSPVKILPEDGKDFI 357 Query: 359 YVVMPMRL 366 Y+V+P+R Sbjct: 358 YLVLPVRF 365 >UniRef50_A6G5S7 DNA polymerase III, beta subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5S7_9DELT Length = 372 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/374 (28%), Positives = 183/374 (48%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ-VADGTLSLTGTDLEMEMVARVAL 59 M+F +++ L L S R T+P+L N+LL+ D L TD+ + + +V Sbjct: 1 MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVP- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + PG+ T+ R + R LP GA L+ + + RS F L +P DFP L Sbjct: 60 CKVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDNSWAQILAKRSEFKLMGMPEGDFPEL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D E T+P + LIE T FS++ + R LNG + E++G+ V+TDGHRL Sbjct: 120 PDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLESDGQTATMVSTDGHRLTK 179 Query: 180 CSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S+ + G +LP +IVPRKG+ E+ ++L+ + + + + + + KL + Sbjct: 180 FSLELEGLALP-REIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSVKLNN 238 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 FP +++V+PK+ + L A +AA+++ EK V++ + + L++ A+NPE Sbjct: 239 VTFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNADNPE 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 L V Y G+ + GFN +Y+++ L AL + + + + + A Sbjct: 299 LGAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLDFQGELDPCVLRPAPDDEGN 358 Query: 359 ------YVVMPMRL 366 VVMPMR+ Sbjct: 359 DPVDFLAVVMPMRI 372 >UniRef50_C4WNF5 DNA polymerase III, beta subunit n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WNF5_9RHIZ Length = 351 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 190/370 (51%), Gaps = 25/370 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +++R L L V+ + R ++PIL N+LL V DG L LTGTDL++E+ + ++ Sbjct: 2 MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE----GERMLVRSGRSRFSLSTLPAADF 116 H G+ TVP + DI + + +I ++L+ G R+ V SGRSR+ L LPA DF Sbjct: 62 DCHS-GSATVPGKMLADIAKRVT--GDITLELDAASSGGRLTVASGRSRYKLDVLPAEDF 118 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P+ + + L + L+ +++ R +L+G+ F + L VATDGHR Sbjct: 119 PSFSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEGRLVAVATDGHR 175 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L G + + VI+P K L+ ML G +++ + +R G + TSKL Sbjct: 176 LVRNYGDEGDT--EYGVILPSK----LVAMLPKG--VIKLSLSQTKVRIEAGGTVITSKL 227 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G FPD+ R++P L L A R + ++ + R V+L V+ + L ++ + Sbjct: 228 IEGTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEVA-DVLCLSIAD 286 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 Q+E E LD G + IGFN Y+ D+L A+ ++V +D +S + + + Sbjct: 287 KAQDEIEGELD----GEPLTIGFNPKYLQDMLGAVDEKDVCFAFSDGMSPAVLTGQGNWT 342 Query: 357 AAYVVMPMRL 366 VVMP+R+ Sbjct: 343 G--VVMPLRV 350 >UniRef50_D1CG53 DNA polymerase III, beta subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG53_THET1 Length = 376 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 115/376 (30%), Positives = 179/376 (47%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E+L + L VS + R TLPILGN+LL G L L T+LE+ + V Sbjct: 1 MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWVGAD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TTVPAR F + LP + EG ++ V +G S + + DFP + Sbjct: 61 IERE-GVTTVPARLFTEFISSLPNEKVLLELNEGHKLHVAAGHSAADIHGMDPEDFPTVP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E + +K +IE F+ A D R L G+LF+ +G++L A DG RL+V Sbjct: 120 SASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGDKLTLAAADGFRLSVK 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----GDFIFTSKL 236 I S S +VIVP K + L R++ GD+ +V+I N ++ + + S+L Sbjct: 180 EQSINSSAESVNVIVPAKALDALSRLI--GDHEEQVEITINPNKSQIVFQAENINVISRL 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS------ENQL 290 +DG FP+Y +++PK ++A RA I + V+L +S ++ Sbjct: 238 IDGNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDTGKI 297 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 ++A E + L+ T G +I FN Y+ DVL+ ++ + V + S I Sbjct: 298 VVSATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIESDQVALETQSPNSPGVIR 357 Query: 351 DAASQSAAYVVMPMRL 366 + S +V+MPM L Sbjct: 358 PVGNGSYTHVIMPMHL 373 >UniRef50_Q0B0Z3 DNA polymerase III, beta subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0Z3_SYNWW Length = 409 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 109/378 (28%), Positives = 195/378 (51%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MKF +E++ LL V + +P+L LLL+ D L++T TD+E+ + A A Sbjct: 30 MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRASTAK 89 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE--RMLVRSGRSRFSLSTLPAADFP 117 ++ E G+ V A FFD + LPE I ++L E ++ ++ GRS ++T ++P Sbjct: 90 IEVIEKGSVLVNAHYFFDFIKLLPE-VPIFIELNQETAQLDIKYGRSSGFINTYRDYEYP 148 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHR 176 L + + FT+ Q +K ++ T F+ A R G+LF+ EG L VA+D HR Sbjct: 149 ALPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDLGEGGNLNVVASDTHR 208 Query: 177 LAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 LA S I P S I+P + E++R+LD + + + +NN+ + +F+ S+ Sbjct: 209 LARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFLLLSR 268 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE---KFRGVRLYVSENQLKI 292 L++G++P+Y +V+P++ ++ +L RA ++ ++ K + R EN++++ Sbjct: 269 LIEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEENEVEV 328 Query: 293 TANNP---EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMM--LTDSVSSV 347 + + E E EI D E+ I FN +Y LDV+ L+ E ++ L+ + V Sbjct: 329 NSYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGEAKELLINLSSILGPV 388 Query: 348 QIEDAASQSAAYVVMPMR 365 I + + YV++P+R Sbjct: 389 MIVNPQKDNYLYVLVPLR 406 >UniRef50_A5D6E5 DNA polymerase sliding clamp subunit n=2 Tax=Peptococcaceae RepID=A5D6E5_PELTS Length = 369 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/369 (29%), Positives = 182/369 (49%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +RE+L LQ V + + LPIL + + D L LT TDLEM + + Sbjct: 1 MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSIT-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + +PGA +PAR ++ R LP+ I + + +R S S++ A ++P Sbjct: 60 EVLQPGAAVLPARYITELIRKLPDQPFLIESDQDTGHVTIRYASSEASMNCFQADEYPEF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + ++EFT+P T++ +I F++ + R G+LFE +++ VATD HRLA Sbjct: 120 PVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREGQVQVVATDTHRLAW 179 Query: 180 CSMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + + I+P + + EL R+ G D ++V + + VG+ ++L+ Sbjct: 180 RKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLITRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G FP+YR+V+P+ + A L +A RA++LS + VRL N + +TAN+ Sbjct: 240 GGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTANS- 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E E L V G ++I FN Y+ DVL + E + + T +S I S Sbjct: 299 EVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGSEEIDIEFTGPLSPGVIRPVGSTDY 358 Query: 358 AYVVMPMRL 366 +++P+RL Sbjct: 359 LSLLLPVRL 367 >UniRef50_Q38ZS3 DNA-directed DNA polymerase III, beta subunit n=64 Tax=Lactobacillales RepID=Q38ZS3_LACSS Length = 379 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/355 (30%), Positives = 179/355 (50%), Gaps = 17/355 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ R +K L V + + T+PIL L L ++ L+LTG+D ++ + A ++ Sbjct: 1 MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60 Query: 61 QP------HEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPA 113 E G +PAR F +I + LPE IAV + +RSG+S F+++ L A Sbjct: 61 DEKNQLVVEEVGEIVLPARFFSEIVKKLPEDQMRIAVG-NNFQTTIRSGKSEFTINGLDA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +P+L + + F++ +K+LI T ++++Q+ R L G+ E+ VATD Sbjct: 120 NSYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGVHLVLANGEMLAVATD 179 Query: 174 GHRLAVCSMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 HRLA +P+ +LPS + VI+P K ++EL R L + ++I N + G+ Sbjct: 180 SHRLAQRKLPV--ALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAGNL 237 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGV---RLYVSE 287 F S+L++G +PD R++P + +E +L A RA++LS+E V L Sbjct: 238 AFYSRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDTEA 297 Query: 288 NQLKITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 N I N+P+ EE L +G +EI FN Y+ D L + + + T Sbjct: 298 NTAIIYGNSPDVGNVEEALQFENLTGESLEISFNPDYMKDALRSFGQTTIVINFT 352 >UniRef50_B0K0W9 DNA polymerase III, beta subunit n=11 Tax=Thermoanaerobacterales RepID=B0K0W9_THEPX Length = 370 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 193/372 (51%), Gaps = 9/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ++ L + + + R TLPIL + + G + +GTDL++ + ++ V Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADFPNL 119 E G VPA+ F ++ R LPEG ++ ++ + + + V F+++ A +FP + Sbjct: 61 -IEEEGEIVVPAKIFSELVRKLPEG-DVKIESDSQNTVNVVCDSINFTIAGSDAVEFPEI 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E F L Q +K LI T F +A + R L G+LFE E++ VA DG R+A+ Sbjct: 119 PLVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVKAVALDGFRMAI 178 Query: 180 CSMP-----IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 S + + +S+++P K + E+ R+L + + + +N + + + S Sbjct: 179 YSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTKVIS 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L++G F +Y VLPK+ + ++L ++ RA++++ K ++ + + + +++ Sbjct: 239 RLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFITVSS 298 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N+ + + E+I +V G +EI FN Y+LD L A+ E + + +S++ + I+ S Sbjct: 299 NSEKGKMIEKI-EVDVKGMFLEIAFNSRYLLDSLRAIDEEEITLYFINSINPLIIKPIGS 357 Query: 355 QSAAYVVMPMRL 366 + Y+++P++L Sbjct: 358 KDYLYMILPVKL 369 >UniRef50_Q6MAH0 Putative DNA polymerase III, beta chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAH0_PARUW Length = 403 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/380 (29%), Positives = 188/380 (49%), Gaps = 23/380 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L + ++ + +PT+PIL N L++ + L LT TDL + + Sbjct: 30 MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTE-A 88 Query: 61 QPHEPGATTVPARKFFDICRGLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+TT+PA++ + R L EI+ E + +G SRF L+ + D+P+L Sbjct: 89 KILEEGSTTLPAKRLSQLVRELTAVNVEISTN-TNEITTIIAGSSRFKLNGMSKTDYPSL 147 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D F + Q+ +K L+ T F+++ +D RY L G+ + + + TDG RLA Sbjct: 148 PDLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITFIGTDGKRLAR 207 Query: 180 CSMPIGQSLPSHS--VIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 I PS S I+P K V E+++ L D G+ +++ + ++ + +KL Sbjct: 208 AKGVIDND-PSFSGQAIIPIKAVDEILKNLTDEGE--VKISLMADKVAIEANQMRILTKL 264 Query: 237 VDGRFPDYRRVLPKNPDK----HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 + G +PD RV+P+ + H E LL+Q ++ + + VR +LK+ Sbjct: 265 LSGDYPDVNRVIPEKSEIIVTLHREELSSLLRQ----ISLFTADHNHSVRFTFIPGELKL 320 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 TAN + E + V Y G ++EI FN + +D+L K E V M LTD+ + I D+ Sbjct: 321 TANTMDIGEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKGETVIMGLTDAYNPGIITDS 380 Query: 353 A------SQSAAYVVMPMRL 366 A S +V+MPMRL Sbjct: 381 AELANSLDASPLFVIMPMRL 400 >UniRef50_D1VRK9 DNA polymerase III, beta subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRK9_9FIRM Length = 365 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/375 (28%), Positives = 189/375 (50%), Gaps = 21/375 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 MKF + R+ L K + V + R T+ IL +L++ D +SLT TD E+ +V AL Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 V+ E G V R F +I R L +I +++E M ++ G S F++S A +P L Sbjct: 61 VE--EEGQIVVNGRLFGNIIRKL-NNDDIFIKVENFNMNIKCGNSEFNISVQNAEGYPAL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + + F+L +K I T F+++ + R G+ + + + VA DG R+A+ Sbjct: 118 PNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDYINFVALDGFRMAI 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + S S IVP + +EL ++LD + + + SNNI G+ +F S L+ G Sbjct: 178 MKINKNTGFTS-SAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYSTLISG 236 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE- 298 +F DY +L + + AF RA++L+ E N +++T NN E Sbjct: 237 KFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLARED--------RANLVEMTLNNEEI 288 Query: 299 --QEEAE-----EILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++E E+++ + G ++I FN Y+L+ + ++ +N+ + LTD ++ I++ Sbjct: 289 YIDSKSEIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNIILNLTDFINPCIIKE 348 Query: 352 AASQSAAYVVMPMRL 366 ++ Y+V+P+RL Sbjct: 349 EDNEDYIYLVLPVRL 363 >UniRef50_A9FMJ3 DNA polymerase III beta subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FMJ3_SORC5 Length = 376 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/381 (27%), Positives = 186/381 (48%), Gaps = 20/381 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + ++ LL+ + + G + +P L N+LL + + TDL + + Sbjct: 1 MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTG----- 55 Query: 61 QPHEP----GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRS--RFSLSTLPAA 114 Q H G VPAR + + +P+G EG +++ S R++L LP + Sbjct: 56 QTHADIKTGGTVAVPARDLLERVKAMPDGPIQITTTEGAHTSLKAVGSPRRYTLPGLPGS 115 Query: 115 DFPNLDDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +FP L + LP + LI T FS++ + R ++N LFE G+ +R V TD Sbjct: 116 EFPQLPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGDRVRMVTTD 175 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG----DNPLRVQIGSN-NIRAHVG 228 GHRL+ + S + ++++P K + EL R+ + + P+ S N ++ Sbjct: 176 GHRLSKMEATVSGSSATATMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIA 235 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN 288 F+ KLVD +FP Y++V+P ++ + A +A A+ +N++ GV+L ++ Sbjct: 236 GMQFSVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPG 295 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 L+IT+ +P+ + + V YSG E+ IGFN Y LDVL ++ E V + ++ + Sbjct: 296 TLRITSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASIDDEEVILGISGELDPAV 355 Query: 349 I---EDAASQSAAYVVMPMRL 366 I ++ QS V+MPMR+ Sbjct: 356 IRPGSESNQQSYVAVIMPMRI 376 >UniRef50_C0QRL0 DNA polymerase III, beta subunit n=3 Tax=Aquificales RepID=C0QRL0_PERMH Length = 364 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 193/371 (52%), Gaps = 13/371 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +++ L L++ + LPIL N LL+ D L++ GTDLE+ + V Sbjct: 1 MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSV-FA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G V A+K DI R LP E+ ++LE + ++SG+++++L P+ DFP + Sbjct: 60 KIENEGTACVNAKKLTDISRLLPSN-EVYIKLEDSTLKIKSGKTKYNLPVAPSEDFPQMY 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + +++ I T ++ + ++ RY L G+LF + + VATDGHRLA+ Sbjct: 119 PFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGNIDVVATDGHRLALY 178 Query: 181 SMP-IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRA--HVGDFIFTSKLV 237 ++ G+ ++IVP+K + EL ++L G ++ V++ + + A ++I ++L+ Sbjct: 179 TIERTGKG--DINIIVPQKALNELKKLLTGLED---VEVAATDQYAFFRTKEWILMTRLL 233 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G FPDY +V+P + ++ ++ R + + + ++L + L++ + + Sbjct: 234 EGVFPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSVSV 293 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E EA + L V Y G E IGFN Y+++ + + + V + T+ + I A Q Sbjct: 294 EYGEAVDELSVDYEGEEYSIGFNAKYLIEAVEVIDGDEVVIKFTNPNAQTLI-IPADQED 352 Query: 358 AY--VVMPMRL 366 Y +VMPM + Sbjct: 353 RYKAIVMPMEI 363 >UniRef50_Q2GAN7 DNA polymerase III beta subunit family protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAN7_NOVAD Length = 415 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 117/389 (30%), Positives = 189/389 (48%), Gaps = 45/389 (11%) Query: 20 PLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV--QPHE--------PGATT 69 P GG+ T+PIL + ++ +DG L+LTG DL+ ++ + +P+ P AT Sbjct: 30 PAGGKDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATC 89 Query: 70 VPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFPNLDDWQSEV 126 VPAR I + + A + V + R+ + +GRSRF ++ LP DFP E Sbjct: 90 VPARALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEH 149 Query: 127 EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA--VCSMPI 184 F++ ++ + + +++ ++ RYYLNG+ + + R ATDGHRLA V P Sbjct: 150 SFSIAAGALRDVFARVEHAISTEETRYYLNGVYMHPQDLDQRFAATDGHRLARLVQDGPD 209 Query: 185 G-QSLPSHSVIVPRKGVIELMRMLDGG---------------DNPLRVQIGSNNIRAHV- 227 G S P +VI+ R+ V L ++LD P+ V++ S++ + Sbjct: 210 GAASFP--AVIIGRRTVAVLDKLLDAAGKVDTSTSDDADKACSRPM-VEVDSDSNGRVIY 266 Query: 228 --------GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR 279 G+ +K VDG FPDY RV+P P L + L A R A + ++K R Sbjct: 267 WAMPAPDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTR 326 Query: 280 GVRLYVSENQLKITAN-NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 V+L + + I + +PE +A E + Y+G + IGFN Y L+A+ + V M Sbjct: 327 AVKLELDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSAVATDKVLM 386 Query: 339 MLTDSVSSVQIEDAASQSA-AYVVMPMRL 366 TD+ +IE +SA V+MP+R+ Sbjct: 387 KFTDAGGPCRIEAEGGESALVQVLMPLRV 415 >UniRef50_D2MK63 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK63_9BACT Length = 281 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 152/281 (54%), Gaps = 17/281 (6%) Query: 99 VRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGM 158 +++GR F + LP+ DFP L + E LP + +LI T F++ D RY LNG+ Sbjct: 5 IKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLNGL 64 Query: 159 LF--ETEGEE--LRTVATDGHRLAVC--------SMPIGQSLPSHSVIVPRKGVIELMRM 206 L TEGE +R V TDGHRLA+ P+ Q VIVP+K E+ R+ Sbjct: 65 LIVVTTEGESPMIRLVGTDGHRLAMAEQKLETDAKAPVEQE---QKVIVPKKAAAEIRRL 121 Query: 207 LD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQ 265 L+ GGD P+ + N + + TS+L++G +P+Y++V+PK +K + A + L+ Sbjct: 122 LEEGGDEPM-IGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEG 180 Query: 266 AFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVL 325 A R ++LS K V+L S+ + + +++P+ EA + + ++G E GFN Y+L Sbjct: 181 ALRRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLL 240 Query: 326 DVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 DVL ++ E V + + S+S I + + VVMP+++ Sbjct: 241 DVLGVMESETVVLNMEASLSPCLIREEDNPLFQAVVMPVKV 281 >UniRef50_B2V9G3 DNA polymerase III, beta subunit n=2 Tax=Sulfurihydrogenibium RepID=B2V9G3_SULSY Length = 362 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 196/368 (53%), Gaps = 8/368 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L + ++V + LPIL N LL+ DG L++ GTDLE+ + Sbjct: 1 MKLKAYKKDLQEAFKKVISE--KKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIP-A 57 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G+ V ++K DI + L + E + +GE + + SG++++SL T A DFP + Sbjct: 58 DVEEEGSLCVNSKKISDISKVLAQN-EALLYTDGETLKITSGKTKYSLPTFEADDFPLPE 116 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + S++ ++ + + I T ++++ + R+ LNG+ F +L VATDGHRLA+ Sbjct: 117 AFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKGKLDFVATDGHRLALY 176 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S I IVP+K + E+ +++ ++ + V + ++I +++ +++L++G Sbjct: 177 STEITGKGLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYVLSARLLEGV 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY +V+P + + + L + R I + + ++L + +N+L I+ Sbjct: 236 FPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTPPTSDT 295 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV--RMMLTDSVSSVQIEDAASQSAA 358 AE+ ++V Y G E EIGFN Y+L+ ++ ++ +N+ + + DS + + E+ + A Sbjct: 296 YAEDEIEVNYDGEEFEIGFNGKYILEAVDEIEDKNIVAKFINKDSQTVIIPENPEERYLA 355 Query: 359 YVVMPMRL 366 VVMPM + Sbjct: 356 -VVMPMTI 362 >UniRef50_B1L1K7 DNA polymerase III, beta subunit n=35 Tax=Clostridium RepID=B1L1K7_CLOBM Length = 367 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/367 (28%), Positives = 191/367 (52%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T ++ LL+ + V + G+ TLPIL +L++ L LTG+D+++ + +V Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G + AR F +I R LP LE + + SRF+L + +FPN Sbjct: 60 NILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNSIEIICQNSRFNLIYMNPDEFPNPP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + F++ + +K +I+ T F+ A + R L G+LF+ + + L VA DG+RLA+ Sbjct: 120 IINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNLVALDGYRLALR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S + ++VI P K + E+ ++L+ + + + N+I +G+ S+L++G Sbjct: 180 SEVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISRLLEGE 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPEQ 299 F Y+ ++P+ + + A L + RA++++ E V+ S +++ IT+N+ Sbjct: 239 FISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITSNSQLG 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EE L V G +++I FN Y+LDVL ++ + V + + SVS I++ + Y Sbjct: 299 MVREE-LKVVLQGEDLQIAFNSKYLLDVLKTMEDDEVVLEFSSSVSPCIIKNTELNNCTY 357 Query: 360 VVMPMRL 366 +V+P+RL Sbjct: 358 LVLPVRL 364 >UniRef50_Q5HK00 DNA polymerase III subunit beta n=240 Tax=Bacilli RepID=DPO3B_STAEQ Length = 377 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/375 (26%), Positives = 186/375 (49%), Gaps = 11/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 M+FT++R++ + L + R TLPIL + + + + LTG+D E+ + + Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61 Query: 58 ----ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLP 112 +V+ E G+ +P R F DI + LP G E+ + E + L+ SG S F+LS L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTLITSGHSEFNLSGLD 120 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 +P L + + L +K +I T F+++ + R L G+ + + EL AT Sbjct: 121 PDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTAT 180 Query: 173 DGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 D HRLAV + + + +VI+P K + EL +++ D + + SN + VG+ F Sbjct: 181 DSHRLAVRKLQLEDESENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRVGNINF 240 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL-K 291 S+L++G +PD R+ P+N + L A RA++L+ E V + N+L + Sbjct: 241 ISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTGNELVE 300 Query: 292 ITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 +++ +PE +E ++ G ++I FN Y++D L A+ + V + ++ ++ Sbjct: 301 LSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK 360 Query: 351 DAASQSAAYVVMPMR 365 S +++P+R Sbjct: 361 PKDDDSVTQLILPIR 375 >UniRef50_Q1NPP3 DNA-directed DNA polymerase n=2 Tax=Deltaproteobacteria RepID=Q1NPP3_9DELT Length = 376 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 104/378 (27%), Positives = 189/378 (50%), Gaps = 16/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 + F V R L L + G + TL +L N+LL+ + L+LT TDLE+ + RV Sbjct: 3 IAFNVPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVP-A 61 Query: 61 QPHEPGATTVPARKFFDICR-GLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + PG T+PARK F++ R + EIA Q + R+ + +G S L+ + A +FP Sbjct: 62 EVTSPGEITLPARKLFELVREAQADQIEIAEQ-DNTRVKINAGNSDCRLAGMAADEFPAF 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFETE----GEELRTVATDG 174 Q + + ++ LI+ T +++AH+ + + L G+L E E G LR V++DG Sbjct: 121 PPHQDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDG 180 Query: 175 HRLAVCSMPIGQSLP----SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 HRLA+ + L ++VPRKG+ E+ ++ + G + + I + G++ Sbjct: 181 HRLAMMESKVEADLGPLAMDRVILVPRKGMQEVRKLCESG-GQIALAIEEKQLVVKAGEY 239 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDL--LKQAFARAAILSNEKFRGVRLYVSEN 288 ++L+ G FPDY+ ++ + DK+ G + L + R I + +++ V + + Sbjct: 240 TMVARLMSGDFPDYKSII-QVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENS 298 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 ++ +++ N + A+E + +TY G M +GFN Y + L + E V+ + S Sbjct: 299 RMTLSSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEALQVMDSEMVKAYINAEDSPCL 358 Query: 349 IEDAASQSAAYVVMPMRL 366 ++ V+MPM++ Sbjct: 359 LQGDKDPGYLSVIMPMKI 376 >UniRef50_A7HMB7 DNA polymerase III, beta subunit n=3 Tax=Thermotogaceae RepID=A7HMB7_FERNB Length = 367 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 187/367 (50%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 +KFTV + + K + S +G R PIL LL + +G +++ TDL+ ++++V + Sbjct: 2 LKFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVG 61 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD-FPNL 119 + A V A DI R LPE E + ++LVRSG+++++++T+ + FP + Sbjct: 62 EYEGNDAFAVDAELVDDIVRNLPED-EFIFEYSNGKLLVRSGKAKYNITTVSDIERFPIV 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D +S ++F++ + ++ +++ F + + LNG+ +E G LR VA+DG+RL + Sbjct: 121 DTDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRLVASDGYRLGL 180 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLVD 238 + I+ K + EL ++L P + + + + + GD + V+ Sbjct: 181 AEQKLNLE-NEFDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTTIVRTVE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 FPDY+RVLPK + D +A R ++S V+L ++++ +++T+ + + Sbjct: 240 ETFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMELTSQSSD 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 EA E + +T G ++ + FN ++ + L + + + D++S +QI Sbjct: 300 FGEAVESIPITKDGEDLIVNFNPKFLNEPLKHIDEKEIEFNFVDNLSPLQINPRNVGGYI 359 Query: 359 YVVMPMR 365 Y+V+P+R Sbjct: 360 YIVLPVR 366 >UniRef50_A6TJ77 DNA polymerase III, beta subunit n=3 Tax=Clostridiaceae RepID=A6TJ77_ALKMQ Length = 368 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/371 (28%), Positives = 194/371 (52%), Gaps = 11/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEM--EMVARVA 58 M F+ ++ L+ + V + + TLPIL + ++ + L L GTDLE+ E V Sbjct: 1 MHFSCSQKALMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEHVMEAD 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 ++Q G V AR F +I R LP+ AE+ + L E ++ ++ + F++ +FP Sbjct: 61 VLQE---GIVVVDARLFSEIIRKLPD-AEVDITLKENNQLEIKCASTEFNILVYSPDEFP 116 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + + + + Q K +I T F+ + + R L G+L E E L VA DG+RL Sbjct: 117 ELPIVEEDQVYEIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEENTLNMVALDGYRL 176 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A+ I + +H V+VP K + E+ R+L+ + PL + + +N+ G S+L Sbjct: 177 ALRKGKISGN-SNHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLISRL 235 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITAN 295 ++G F +Y+++LPK + + + RA++L+ E + VR V++ ++ IT+N Sbjct: 236 LEGEFINYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVITSN 295 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + EEI ++ G ++EI FN Y +D L + E V + T ++S ++ A++ Sbjct: 296 SELGKVHEEI-NIVLEGEDIEIAFNSKYFIDALKVIDDEEVCLEFTTNLSPGILKPLANE 354 Query: 356 SAAYVVMPMRL 366 + Y+V+P+RL Sbjct: 355 NYTYLVLPVRL 365 >UniRef50_C8WXS8 DNA polymerase III, beta subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXS8_ALIAD Length = 374 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/372 (28%), Positives = 194/372 (52%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F+++++ L LQ VS + R +L +L++V + + T DLE+ + RV + Sbjct: 1 MEFSLQKQALSNALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60 Query: 60 ----VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRS-RFSLSTLPAA 114 ++ H+ GA +PAR F DI R LP+ EI ++++ M S +S F L + A Sbjct: 61 EETGLRVHQTGAIVLPARYFGDIVRKLPD-TEIHMRVDANYMTEISAQSVEFHLHGIDAE 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 +FP L ++ +P +T+ RLIE+T F+ A +VR L G+ ++ L +ATDG Sbjct: 120 EFPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGVSITSDPTHLTFIATDG 179 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLA +P LP V++P K + EL ++L + + + + ++ +G F + Sbjct: 180 LRLAQHRVP-QADLPERQVVIPAKSLSELSKILPEDETSVEMVLTPSHGLFVIGPTRFYT 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKIT 293 +L++G +PD R++P++ + D A RAA+++ +K VRL V+ + L +T Sbjct: 239 RLLEGTYPDTSRLIPRSARTQVVLDGDAFLHAIDRAALIARDKDNHMVRLEVTGDTLTVT 298 Query: 294 ANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +++PE E L + G +++I FN YV++ + AL + + + + IE + Sbjct: 299 SHSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAAEIAIRFNGANQAFVIERS 358 Query: 353 ASQSAAYVVMPM 364 S ++ P+ Sbjct: 359 GDPSMLQLISPI 370 >UniRef50_A6C2Q1 DNA polymerase III, beta chain n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C2Q1_9PLAN Length = 376 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/374 (27%), Positives = 183/374 (48%), Gaps = 12/374 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + R LL Q + + R +L L+ ADG +L+GTDLE+ + V Sbjct: 1 MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60 Query: 61 QPHEPGATTVPARKFFDICR-GLPEGAEIAVQLEGER----MLVRSGRSRFSLSTLPAAD 115 + PG + + I R + EI ++ + E +L+++G+S F LS ++ Sbjct: 61 EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 FP ++ + F +P + + +I T F+ + RY L G+LF+ EG++L ATDG Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDVEGDKLTLAATDGR 180 Query: 176 RLAV----CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 RLA+ CS ++ ++ ++P K + + + L G + +++ I +N++ G Sbjct: 181 RLAMVESACSYQGSEAYENNRPVIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKSGRST 240 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 +LV+GRFP YR V+P P ++ A +A I+++ + RGV S L Sbjct: 241 IFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSSGLLT 300 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQIE 350 + + E++ + + + G ++ I F+V Y+ D L L ++R+ L DS S+ ++ Sbjct: 301 LKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAAHIRLQLIDSDSAAVLK 360 Query: 351 DAASQSAAYVVMPM 364 YV+MP+ Sbjct: 361 --TDDGYTYVIMPL 372 >UniRef50_C6V443 DNA polymerase III, beta subunit n=2 Tax=Neorickettsia RepID=C6V443_NEORI Length = 372 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/366 (27%), Positives = 188/366 (51%), Gaps = 10/366 (2%) Query: 4 TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPH 63 TV+++ L + L + + T+ L ++ ++ ++ LT TD E+ + + ++ Sbjct: 10 TVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEGV 69 Query: 64 EPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQ 123 A +V A + ++I + LP + + +E + ++VRS R FSL L A FP + + + Sbjct: 70 IDAAISVDAFRLYEIVKRLPTDVGVVLSIEKDNLVVRSKRIEFSLPYLDAKHFPLISEEE 129 Query: 124 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMP 183 + ++ L +F+ +++ R +LNG+ FE++GE++ ATD HRLAV ++ Sbjct: 130 KIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGEKITVAATDVHRLAVATLT 189 Query: 184 IGQSLPSHSVIVPRKGVIELMRMLDGGDNPL----RVQIGSNNIRAHVGDFIFTSKLVDG 239 L S I+P+K V E++++ + L R I + I+ G SKL+ G Sbjct: 190 KKTGLK-FSCIIPKKTVSEMIKLSSSKEVELFLHGREYI--SRIKMVFGSVRLNSKLIAG 246 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FP++ V+P++ L L + R ++S ++ R + + + QL + A+N + Sbjct: 247 TFPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYLDASNSDA 306 Query: 300 EEAEEILDVTY-SGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E+L++ +G E+ I FN Y+LD+L+AL + V M ++ S V + +SA Sbjct: 307 SFGRELLELNEDTGEEISIYFNHVYLLDILSALDNKEVTMKFNNATSQVLFQ--GDESAL 364 Query: 359 YVVMPM 364 YVVMPM Sbjct: 365 YVVMPM 370 >UniRef50_O67725 DNA polymerase III subunit beta n=2 Tax=Aquificaceae RepID=DPO3B_AQUAE Length = 363 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/370 (28%), Positives = 186/370 (50%), Gaps = 11/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V+RE L + L++ + LPIL N LL + L + TDLE +V V Sbjct: 1 MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V ++K +DI + L A + + EGE++++ G+S + L T PA DFP Sbjct: 61 VEEE-GEVCVHSQKLYDIVKNL-NSAYVYLHTEGEKLVITGGKSTYKLPTAPAEDFPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E TL + IE ++++A ++ L GM + + V +DGHRLA+ Sbjct: 119 EIVEGGE-TLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYEDRIHFVGSDGHRLALY 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG--DFIFTSKLVD 238 P+G+ S +++PRK + L +++ G ++ + ++ + A+ ++ +L++ Sbjct: 178 E-PLGEF--SKELLIPRKSLKVLKKLITGIED-VNIEKSEDESFAYFSTPEWKLAVRLLE 233 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FPDY V+P+ + + + + R LS K V++ +SEN +PE Sbjct: 234 GEFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFEFADPE 293 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT--DSVSSVQIEDAASQS 356 EA E ++V Y+G EIGFN Y+++ L+A E V T D+ + ++ ED + Sbjct: 294 FGEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDSERVWFKFTTPDTATLLEAEDYEKEP 353 Query: 357 AAYVVMPMRL 366 ++MPMR+ Sbjct: 354 YKCIIMPMRV 363 >UniRef50_D2QRF3 DNA polymerase III, beta subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRF3_9SPHI Length = 379 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/348 (29%), Positives = 162/348 (46%), Gaps = 14/348 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV------ADGTLSLTGTDLEMEMV 54 MKF V LLK LQ ++G + P +PIL N L ++ GTL++T +DL+ M Sbjct: 1 MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPE---GAEIAVQLEGERMLVRSGRSRFSLSTL 111 ++ V+ +E G+ +PA+ D R LPE I + G +L +GR + LS Sbjct: 61 TQIP-VEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTEILTDNGR--YKLSGE 117 Query: 112 PAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 DFP L + + + I T F+ + D+R + G+L + + VA Sbjct: 118 NPIDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATFVA 177 Query: 172 TDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 TDGHRL + S S+I+PRK ++L++ + P+ + N G Sbjct: 178 TDGHRLIRYRRTDLNASASTSIIIPRKA-LQLLKASLPENVPVTAEFSQANASFTFGPTQ 236 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 +L+D RFPDY +P N + G L + R I +N +RL + N L Sbjct: 237 LICRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKANSLT 296 Query: 292 ITANNPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 I+A + + EA E L Y G MEIGFN + +VL+ L + + + Sbjct: 297 ISAEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSAKMISL 344 >UniRef50_B9KC54 DNA polymerase III, beta subunit n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC54_THENN Length = 366 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK L + S L + P+L L +V +G + TDLE + A V Sbjct: 1 MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLETGVKASVNCA 60 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + VP + + LP E E++ LEG+ +++ SG + F ++T+PA +FP++ Sbjct: 61 EISGDARFVVPGDVLQKLVKVLPDETTELS--LEGDNLVITSGSTVFRITTMPADEFPDI 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 +S + F + + ++ ++E F+ A + LNG+ +E LR VA+DG RLA+ Sbjct: 119 APAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRLVASDGFRLAL 178 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLVD 238 I ++ ++ K + E+ +L+ P + V+ + D ++VD Sbjct: 179 AEEQIENEEETN-FLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTNDVETVMRVVD 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 FPDYRRV+P+ + L+++ R +++++ V+ + EN +++ + +P+ Sbjct: 238 AEFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENTMRLVSRSPD 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E + L+V G ++ I FN +++D L ++ E + M DS S QI Sbjct: 298 YGEVIDELEVQKEGEDLIIAFNPKFIVDALRRIETEELEMNFVDSTSPCQINPLDISGYI 357 Query: 359 YVVMPMRL 366 Y+VMP+RL Sbjct: 358 YIVMPIRL 365 >UniRef50_C9XIB4 DNA polymerase III, beta chain n=6 Tax=Clostridium RepID=C9XIB4_CLODC Length = 402 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 10/350 (2%) Query: 21 LGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR 80 + G+ T+ +L +L+ +G L LTG D E+ + V + E G V AR F DI R Sbjct: 55 INGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQ-AEIIEKGDVVVDARLFGDIIR 113 Query: 81 GLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLI 139 LP+ EI E + + SRF + A +FP L + E +++PQ +K +I Sbjct: 114 KLPDSFVEIETDSEN-NIYINCVNSRFKIKGYAAKEFPKLPELNEEDLYSIPQEILKNMI 172 Query: 140 EATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKG 199 + T F+++ + L G L E L VA DG+RLAV S + + VI+P K Sbjct: 173 KQTVFAISQDQTKPVLMGELLEIVDRNLNLVAIDGYRLAVKSCSVDSLTENIKVIIPGKT 232 Query: 200 VIELMRMLDGGDNPLRVQIGSNNIRA--HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLE 257 +I++ +L G DN V++G N A + D ++L++G F DY+++LP+ + ++ Sbjct: 233 LIDVNSLLSGEDN---VKVGFNEKNAIFIINDTKIITRLLEGDFIDYKKLLPREHNSRVK 289 Query: 258 AGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEME 316 L + RA++LS +EK ++L + + + IT+N + EE+ ++ G ++ Sbjct: 290 LNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITSNTEKGNVYEEV-EIDLDGDYLD 348 Query: 317 IGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 I FN Y ++ L + E + + T +V+ I+ + Y+++P+R+ Sbjct: 349 IAFNSRYFIEGLKNIDNEEIFIEFTTNVNPCIIKPTDDVNYIYLLLPVRI 398 >UniRef50_C9RQU7 DNA polymerase III, beta subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU7_FIBSS Length = 373 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 186/372 (50%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+++ L LQ + + T+ IL N L++ L ++ TDL++ + +V V Sbjct: 1 MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR---SGRSRFSLSTLPAADFP 117 Q GA + ARK FD + L + + + + + LV+ S R + S+ A DFP Sbjct: 60 QGERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYLVKIQWSERGKASIIGFDANDFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + ++ + + + L E T F+ + R LNG+ E + ++ VATDGHRL Sbjct: 120 PFPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVFLEAKDGKISMVATDGHRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 ++ + S+ VI+P K + ++ M GD+ + V+ + +I + G SKL Sbjct: 180 GRAAIDQEGAELSNGVIIPHKALQHILHMAK-GDSTVEVRTSATHILFNTGSIQVISKLY 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G +P YR V+P+ ++ +A + ++N + R +RL N L+++A +P Sbjct: 239 EGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILELSATDP 298 Query: 298 E-QEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA-S 354 + ++ E L +T++G IGFN ++ ++L K E V M + + + + IE + Sbjct: 299 DVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKSEEVIMKMNNPLGACIIEPVGEN 358 Query: 355 QSAAYVVMPMRL 366 + ++++MP L Sbjct: 359 MNFSFLLMPTHL 370 >UniRef50_B5Y6P1 DNA polymerase III, beta subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6P1_COPPD Length = 361 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 187/368 (50%), Gaps = 9/368 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + +E L++ L+ V + + T P+L N+LL+ D L +TGTD++ + ++AL Sbjct: 1 MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIAL- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E TTVPA+ F D + P G+E+ +++ + + SG + LSTLP ++P L+ Sbjct: 60 EAAEELRTTVPAKFFSDFVKKAP-GSEVQLEVGENYLSISSGSASLKLSTLPPEEYPELE 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRY-YLNGMLFETEGEELRTVATDGHRLAV 179 Q FT+ AT+K+ ++A + +++ ++R L G+L + L V TDGHRLA Sbjct: 119 VLQGNT-FTVDAATLKKAVDAVKKNVSKGELRNPVLEGILLDGSEGMLIAVGTDGHRLAA 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS-KLVD 238 C + + + +P + ++ L + + G + A D I+ + ++ Sbjct: 178 CKTDLQVT---ETACLPADVLSDVCDTLVNTGSTAYITFGDGEV-AFENDVIYAVIRTLE 233 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FP +R V+PK + + + RA +L+ VRL + + L I+A PE Sbjct: 234 GQFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSLTISAEVPE 293 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E + V G +++I N +Y+ DVL+ + +NV LT + + I S++ Sbjct: 294 LGSFVESIPVDKEGPDLKIACNYAYLQDVLSGIDEDNVVFGLTSPLHPIVIRPVESENYV 353 Query: 359 YVVMPMRL 366 +VMPM+L Sbjct: 354 GLVMPMKL 361 >UniRef50_Q11UU6 DNA polymerase III, beta subunit n=13 Tax=Bacteroidetes RepID=Q11UU6_CYTH3 Length = 374 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/344 (27%), Positives = 170/344 (49%), Gaps = 5/344 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V LLK L ++G + P +PIL N L ++ DG L + +DL+ M+ +A V Sbjct: 1 MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIA-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ VPA+ D + LPE + E + + S R+ LS A DFP + Sbjct: 60 EAKAKGSIAVPAKILLDTLKNLPEQPVTFTIDPETYSIEISSDNGRYKLSGENATDFPKV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + R I +T F+ ++ +++ + G+ VATDGHRL Sbjct: 120 PGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATFVATDGHRLIR 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S ++++I+P+K + L L + ++++ ++N + +L+D Sbjct: 180 YRRTDIVSEMANTLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMICRLIDE 239 Query: 240 RFPDYRRVLP-KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 RFPDY +P NP+ D++ + R +I +N+ VRL ++ ++L+I+A + + Sbjct: 240 RFPDYENAIPVDNPNVLTITRTDMM-NSLKRISIYANKTTHQVRLKLAGSELQISAEDLD 298 Query: 299 -QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 EA E L + G +MEIGFN +++++L+ L + M + Sbjct: 299 FSNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDSPQISMHFS 342 >UniRef50_A5FGC6 DNA polymerase III, beta subunit n=12 Tax=Bacteroidetes RepID=A5FGC6_FLAJ1 Length = 372 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 174/343 (50%), Gaps = 4/343 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V +LLK LQ + + TLPIL N L ++ + L+++ +DLE M A ++ + Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLS-I 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ VPA+ +I + PE + + + S +++L+ +FP Sbjct: 60 DSTSKGSVAVPAKLLLEILKTFPEQPLTFTVEDNNTVEISSNSGKYALAYAAGEEFPKSV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + +P + + T F+ + D+R ++G+ F+ E L VATD H+L Sbjct: 120 NLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTFVATDAHKLVKY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + ++ I+P+K + L +L D ++++ +N ++I +L+DG+ Sbjct: 180 ARADVKASQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMCRLIDGK 239 Query: 241 FPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE- 298 +P+Y V+PK NP+K L L + R AI SN+ +RL ++ +L ++A + + Sbjct: 240 YPNYEAVIPKENPNKLL-IDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSAEDIDY 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 +AEE L Y G +++IGFN +++++L L+ + + + ++ Sbjct: 299 SNKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIMLEMS 341 >UniRef50_UPI00016C0202 DNA polymerase III subunit beta n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0202 Length = 390 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 183/368 (49%), Gaps = 4/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L + + V R T P+L +L+ + TL+L G +LEM + + Sbjct: 23 MKFICNQNILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMG-IEKTIEG 81 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G + A+ F +I + +P+G + ++ + SG+SRF+L TL + FP L Sbjct: 82 EILENGKIAIDAKLFSEIIKKMPQGDIKMATINETQITITSGKSRFTLQTLDTSHFPTLP 141 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D + T+ Q +K LI+ T FS+A ++ R L G FE E +L VA DG +A Sbjct: 142 DVSLKQSLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEVENGQLSLVAIDGFXIAFR 201 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSNNIRAHVGDFIFTSKLVDG 239 ++ + S ++P K ++E+ ++L +N + + G N+I ++ D S L++G Sbjct: 202 TISLNNKNLSIEKVIPAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVSXLLEG 261 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITANNPE 298 F Y+ + + + + + + R+A++S E + +R ++++ L IT+N Sbjct: 262 EFLRYKDIFSNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIITSNTDI 321 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 EEI D+ +G ++I FN Y++D L ++ + + + + I S Sbjct: 322 GNSLEEI-DIILTGMPLKIAFNPRYLIDALKNIEDDEICINFLSKTAPAVIMPINSDKYR 380 Query: 359 YVVMPMRL 366 Y+V+P+R+ Sbjct: 381 YLVLPIRV 388 >UniRef50_Q2S6M1 DNA polymerase III, beta subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S6M1_SALRD Length = 377 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 176/349 (50%), Gaps = 12/349 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT LL+ L V G + + T+PIL +L + TL L+ TDLE+ ++ V V Sbjct: 1 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVP-V 59 Query: 61 QPHEPGA-----TTVPARKFFDICRGLPE-GAEIAVQLEGE-RMLVRSGRSRFSLSTLPA 113 Q + G VPA++ D R LP+ E A + E RM G + + Sbjct: 60 QFEKNGTPESTPIAVPAQRLIDTLRALPDLPIEFAADSDFEIRMDTDQGH--YKMVGHDG 117 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +D+P L + + + E + + R I+ T F+++ +R + G+ F+ EE VATD Sbjct: 118 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSVVATD 177 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 GHRL ++P ++ S IVP K R+++ D V++ +++ G+ Sbjct: 178 GHRLVKLTLPELRADTSADFIVPEKATKLAGRIVE-DDEICTVRVDDSHVSFEFGESRVL 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 ++L+D +P+Y+ V+P D++L + + A R + S+ +RL ++ + + I+ Sbjct: 237 ARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTVTIS 296 Query: 294 ANNPEQ-EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 A + E+ EAEE + Y MEIGFN Y+ +VL+ ++C+ V L+ Sbjct: 297 AEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVECDEVVFELS 345 >UniRef50_D0MJZ8 DNA polymerase III, beta subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJZ8_RHOM4 Length = 379 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 169/345 (48%), Gaps = 12/345 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+FTV LLK L V+G + + T+PIL +L + DG L L+ TDLE+ +V R+ + Sbjct: 1 MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60 Query: 60 --VQPHEPGA--TTVPARKFFDICRGLPEGAEIAVQLEGER---MLVRSGRSRFSLSTLP 112 +Q + GA VPAR+ + R LP+ + VQ + + + + + + + Sbjct: 61 LELQNGKEGARRVAVPARRLLETLRALPD---LPVQFSADESFNVTLTTDQGHYKMVGFD 117 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 AD+P L + T+ A ++R I+ T F+++ +R + G+ F+ + EE R VAT Sbjct: 118 GADYPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRVVAT 177 Query: 173 DGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 DGHRL + S IVP K + ++ D +++ ++ +G Sbjct: 178 DGHRLVRLRLRELVSETPLEFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGPVRI 237 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 S+L+D +P+Y V+P D+ L D A R + ++ VRL + + ++I Sbjct: 238 ISRLIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDHVEI 297 Query: 293 TANNPEQ-EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 A + E+ EA E + Y G M IGFN Y+ +VL + + V Sbjct: 298 AAEDIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDSDEV 342 >UniRef50_B8E2I1 DNA polymerase III, beta subunit n=2 Tax=Dictyoglomus RepID=B8E2I1_DICTD Length = 367 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 186/372 (50%), Gaps = 11/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ++E L K LQ V + + T+PIL + ++ + TL L G +LE+ + + ++ Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG +PA F D+ LPE EI V E R ++ +G S + +FP + Sbjct: 61 V-EEPGEVCLPASLFIDVIGKLPEVTLEIHVN-ERNRAVIHAGYSDIEIQGESTEEFPKV 118 Query: 120 DDWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + E + + + I+ T F+ A +++ L G+LFE + +L VA DGHRLA Sbjct: 119 EIGNIGEYHASFDRILFAKAIKQTIFAAAEDEIKQVLTGVLFEGKEGKLNMVAVDGHRLA 178 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + ++ I + +IVP K + E +++ D+ + + N + + G+ F S+L+ Sbjct: 179 LKTLEIEKDFA--PIIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVFNCGEIYFISRLL 236 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKITANN 296 G+FP Y +++P + +A R + + ++ V++ +S ++ I+ Sbjct: 237 QGQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKISLSSEEVVISTLP 296 Query: 297 PEQEEAEEIL--DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 E+ A+E+L +V G +EIGFNV Y++D L+ + V M T + I Sbjct: 297 SERGFAKEVLPAEVEIDG-NLEIGFNVEYLMDPLDNADWDEVVMRFTSDLGPALITSPED 355 Query: 355 QSAAYVVMPMRL 366 ++ Y++MP+RL Sbjct: 356 ENYTYILMPVRL 367 >UniRef50_C5JAN5 DNA polymerase III subunit beta n=1 Tax=uncultured bacterium RepID=C5JAN5_9BACT Length = 372 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 189/373 (50%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV R+ ++ L V + + LP+L + LL+ A +++ GTDL++ +++ Sbjct: 1 MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDI-VISEECRA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q G+ VP DI + L EG + +++ +R GRS F LS LPA FP++ Sbjct: 60 QTQIEGSLCVPGVLLHDIVKRL-EGYDTLSFSHEDQLFLRCGRSEFRLSVLPAEQFPDVS 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE--ELRTVATDGHRLA 178 F + A +K++I+ + M D LN + T E +L V+TD H+LA Sbjct: 119 QLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQLA 178 Query: 179 VCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAH---VGD---FI 231 + + + + L + ++V RK + E+ R+L DN +V +G+++ R V D + Sbjct: 179 LSKISLEKKLDLQTGLVVGRKAITEIRRLL-LDDNAKQVTLGASHARIQCDVVTDDLVIM 237 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 FT++LVDG +P+Y +V+ + + +L+ A R ++ + +G+ L S N + Sbjct: 238 FTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNLMT 297 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 +TA + + +E L++ + G I N Y+L+++ + E V + + ++ I+ Sbjct: 298 MTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDTEQVEIHADNPHEAMHIKP 357 Query: 352 AASQSAAYVVMPM 364 + Y++MP+ Sbjct: 358 FGLEYPHYMIMPL 370 >UniRef50_A7VRS4 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A7VRS4_9CLOT Length = 440 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 12/374 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MK ++ L++ + V + + TL L +LL+ +G L L G DLE+ + V Sbjct: 68 MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELG-ITTVIE 126 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML--VRSGRSRFSLSTLPAADFP 117 Q EPG + AR F DI R LP+ E L E+M+ + G S FS+ +P++++P Sbjct: 127 AQVDEPGEVVLSARLFGDIVRRLPD--ETVTILVDEKMITQITCGPSEFSIVGIPSSEYP 184 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + L +K +I T F++A D + G LF E +R V+ DG+RL Sbjct: 185 ELPSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRLVSVDGYRL 244 Query: 178 AVCSMPIGQSLPSHS---VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 A+ + I +VP K + E++++L D + + +G +I + + S Sbjct: 245 AMRTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSVIS 304 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSEN-QLKI 292 +L++G F DY+ +P + L + R ++L ++ + VR SE+ ++KI Sbjct: 305 RLLEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEIKI 364 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + +E L +G E+EIGFN Y+LD L + V++ LT VS ++I Sbjct: 365 SCVTSIGKANDE-LSAQITGPEVEIGFNNRYLLDALRNADTDEVKVQLTGPVSPMKIVPT 423 Query: 353 ASQSAAYVVMPMRL 366 S ++V+P+RL Sbjct: 424 QGDSFLFLVLPVRL 437 >UniRef50_A3DHZ5 DNA polymerase III, beta subunit n=5 Tax=Clostridium RepID=A3DHZ5_CLOTH Length = 366 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 185/368 (50%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E L++ + V + + TL IL +LL+ D +TG DLE+ + + Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLID-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 E G+ + ++ F DI R LP+ +E+ +++ E +++ S F L +P+ FP+L Sbjct: 59 DILEKGSIVLNSKMFGDIVRRLPD-SEVLIEVKENNTVIIECDNSHFELRGMPSDSFPSL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + E + Q ++ +I T F+++ + R L G L E G E+ V+ DG R+A+ Sbjct: 118 PSIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITFVSIDGFRMAL 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + SV+VP K + E+ ++L D + + N I +G+ S+L++G Sbjct: 178 RKNFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSRLLEG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNPE 298 + +Y+ ++P + + + L + RA+++ S+EK V+ + ++++ IT+N Sbjct: 238 EYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITSNTEI 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 EEI V +G+ ME+GFN Y ++ L + E V + SV I S A Sbjct: 298 GAVREEI-RVEVNGSNMEVGFNPRYFIEALRVIDDELVDIYFNSSVGPCTIRPLEGDSFA 356 Query: 359 YVVMPMRL 366 Y+++P+R+ Sbjct: 357 YMILPVRI 364 >UniRef50_B2A2Y7 DNA polymerase III, beta subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2Y7_NATTJ Length = 370 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 188/370 (50%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MK +++ L + LQ + + T+P L +Q +D TLS+ DLEM + ++ Sbjct: 1 MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLS- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + E G+ VP KFFDI + LPE +V E + + SG+ + + L ++P Sbjct: 60 TEILEQGSVVVPT-KFFDIIKKLPEDQITFSVDQENYLITIESGQVYYEIKGLDPEEYPK 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE-ELRTVATDGHRL 177 L + + F++P+ +K++I T F+++ ++ + G+L + + + +L VATD +RL Sbjct: 119 LPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKFDSDNKLDMVATDSYRL 178 Query: 178 AVCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A I S S I+P+K + ++ R++ D + + + + SKL Sbjct: 179 AWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLFSKL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITAN 295 +D FP+ +V+PKN + L+ + RA++L++E V+L +SE ++IT+N Sbjct: 239 IDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEITSN 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +P + +E L + G + I N ++++VL ++ + V + T S S + I + Sbjct: 299 SPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIEEDQVELEFTGSYSPMIIRPREND 358 Query: 356 SAAYVVMPMR 365 ++++P+R Sbjct: 359 QYFHLILPVR 368 >UniRef50_B9KZ05 DNA polymerase III, beta subunit n=2 Tax=Thermomicrobia (class) RepID=B9KZ05_THERP Length = 380 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/376 (28%), Positives = 178/376 (47%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + L + L QVS + R TLP+L N+LL + L +T T+LE+ + Sbjct: 1 MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADFPNL 119 + +PG +V A F + LP+ I G L V G S+ + +PA DFP+L Sbjct: 60 EVTDPGQLSVRADVFTEFIGSLPKQDVILSGTTGSNDLRVTCGTSKARIPGIPAEDFPSL 119 Query: 120 DDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + T+P ++ I F+ A D R L G+L E G EL A DG RL+ Sbjct: 120 PRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTLAAADGFRLS 179 Query: 179 VCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFTSK 235 V S+ + Q + ++IVP + + EL R+L G+ +++ + N + A G F S+ Sbjct: 180 VRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEFLSR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN------- 288 L+DG FP++R+++PK + + A RA I + V+L+++ Sbjct: 240 LIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSELDPG 299 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 L ++A + + E+IL G E I FN Y+ DVL+ K + + +T ++ Sbjct: 300 SLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKATEIALEMTTPNAAGV 359 Query: 349 IEDAASQSAAYVVMPM 364 +S +VVMPM Sbjct: 360 FRPVGDESFVHVVMPM 375 >UniRef50_C8WIM7 DNA polymerase III, beta subunit n=2 Tax=Coriobacteriaceae RepID=C8WIM7_EGGLE Length = 366 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 178/368 (48%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ + L L V + R TLPIL + L D TL+L TDLE+ + VA + Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VP + F +I + LP+ A + V E + ++ + FS+ TL A DFP Sbjct: 61 -IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAVITCDTASFSIKTLDAEDFPGFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E ++P +++ ++ + R L G+L E L+ VATD +RLA+ Sbjct: 119 HVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVLITLEDTTLKMVATDSYRLAIT 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +S V ++ + L ++ L++ + N I D +F ++ ++G Sbjct: 179 EAELPESSAEEFQAVIAGSFLQEISSLPRSEDDLKLALAENQIVVTYHDTVFINRRLEGN 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV--SENQLKITANNPE 298 FP+YR++LP + + L R ++L + VR + + ++++A + Sbjct: 239 FPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFAINMASQTVQLSAVAQD 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 A+E L G ++EI FN +YVLD L+++ +NV + + S+ + ++ Sbjct: 298 VGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVSTDNVFLEVQSSMKPGIFKADEGENFL 357 Query: 359 YVVMPMRL 366 Y+VMP+R+ Sbjct: 358 YLVMPVRI 365 >UniRef50_Q2RMJ6 DNA polymerase III, beta subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMJ6_MOOTA Length = 374 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 184/377 (48%), Gaps = 15/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + L+ +Q+V + T + +LLQ + TL+L GTDL++ ++ V Sbjct: 1 MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G +PAR F ++ R LP + L+ + + +S+ L+++ A+ FP L Sbjct: 60 EVIEEGELLLPARIFTEMVRRLPPTSLSLQSLQDNTVEIAYQQSKVQLNSIDASQFPLLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 178 + FT+ +K I + + D+R NG+L+E E E R VATD HRLA Sbjct: 120 PVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTHRLA 179 Query: 179 VCSMPIGQ-----SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 V GQ S + + +VP + + EL R+L G D +++ IG + I A Sbjct: 180 VYH---GQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLY 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG----VRLYVSENQ 289 ++L++G+FP Y++V+P + +E L RA +L+ ++ + + L V E Sbjct: 237 TRLLNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKS 296 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 LKIT+ E EE L +G +E+ N Y+L+ L + ENV + L + V + Sbjct: 297 LKITSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETLRVIDTENVILELLAPLKPVVV 356 Query: 350 EDAASQSAAYVVMPMRL 366 A ++ +++P+R+ Sbjct: 357 RPAGQENYFCLILPVRI 373 >UniRef50_B0TAK9 DNA polymerase iii, beta subunit n=2 Tax=Heliobacteriaceae RepID=B0TAK9_HELMI Length = 371 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 181/373 (48%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ R LL+ + VS + + T P+L + L+ D L L TD+E+ + + V Sbjct: 1 MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+T V AR F ++ R LPEG V + + VR S +L+T+ +FP L Sbjct: 60 RTKRTGSTVVNARIFNEMARRLPEGPITFCVNGDNPALKVRYHGSELTLNTMNPQEFPLL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + Q K++ F+ + + R + G+L++ + EE+R VATD HRLA+ Sbjct: 120 PAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRWVATDTHRLAL 179 Query: 180 CSMPIGQSLPSH-----SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 S GQ++ H VI+ K + ++ R+L + PL++ + + Sbjct: 180 LS---GQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVIL 236 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS--NEKFRGVRLYVSENQLKI 292 ++++G++P Y++V+P++ L L +A RA++ S E ++L N L I Sbjct: 237 RIIEGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTI 296 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +N+PE E + V G + I FN Y+ DVL L E VR+ L +++ + Sbjct: 297 RSNSPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDTEQVRLDLFGTLAPGLLRPV 356 Query: 353 ASQSAAYVVMPMR 365 Y+++P+R Sbjct: 357 GEDHYLYLIVPVR 369 >UniRef50_C4FYD9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYD9_9FIRM Length = 404 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 14/350 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEM------EMV 54 M F++ R++ + L V+ + G+ +P+L + L++ L LTG+D + E Sbjct: 22 MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPA 113 A +Q PG+ + AR F DI R LP EI VQ + + + SG++ F++ + + Sbjct: 82 QEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQ-DHYNVQLTSGKAVFTIQGVDS 140 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 + +P L + + TLP K+LI T FS ++Q+ R L G+ L VATD Sbjct: 141 SQYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDGYLTGVATD 200 Query: 174 GHRLAVCSMPIGQ---SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 HRL+ +PI SL ++ +P+K VIEL R+LD N + + + + H + Sbjct: 201 SHRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDDESN-VTFYVMAQQLVFHFDNL 259 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQ 289 + S+L++G FPD R++P + L QA RAA+L + K V+L +S+ Sbjct: 260 VIYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKMSQGS 319 Query: 290 LKITANNPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 + + + EE+ + G ++ I FN Y+ D + + +++ Sbjct: 320 VALLVQGISIGQSTEELSYDSLEGDDLTIAFNPDYMRDAVKSFGDTTIKL 369 >UniRef50_A8F4G9 DNA polymerase III, beta subunit n=7 Tax=Thermotogaceae RepID=A8F4G9_THELT Length = 367 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 169/352 (48%), Gaps = 5/352 (1%) Query: 17 VSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKF 75 VS + + PI+ +L ++ DGT L TDLE + AR+ E G V A+ Sbjct: 18 VSKTIPSKTIKPIMACILFDISHDGTF-LHATDLETGVKARMESEADGE-GKFAVDAKTV 75 Query: 76 FDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATM 135 ++I R LP E+ ++ M + GRS+F L T+ DFP + L T+ Sbjct: 76 YEIVRTLPNEEEVLLEFSSNLMTLECGRSKFRLPTMDPGDFPEISLTTEGNTLMLDAKTI 135 Query: 136 KRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIV 195 +IE F A + LNG+ +E LR VA+DG RLA+ + S S ++ Sbjct: 136 NDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRLVASDGFRLALSEERLNAQSES-SFLI 194 Query: 196 PRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDK 254 K + EL +++ D+ + ++ + + D ++V+ FPDYR+VLPK Sbjct: 195 SLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMRVVEIDFPDYRKVLPKAFKS 254 Query: 255 HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAE 314 + D + +A R +++ VRL +SE+ L +++ +P+ E E + + G + Sbjct: 255 KVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSRSPDYGEVNEEIPIKKEGED 314 Query: 315 MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 + I FN ++L+ + + E V + DS S +QI + Y++MP+R+ Sbjct: 315 ITIAFNPLFLLEAMRHVHTEEVELNFVDSTSPLQINPLNVEGYLYIIMPIRI 366 >UniRef50_UPI0001C311AE DNA polymerase III, beta subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311AE Length = 369 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/371 (29%), Positives = 180/371 (48%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MK + RE LL LQ VS R + L + L A G + L TD+E+ + RV L Sbjct: 1 MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGL--RVPLP 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR--SGRSRFSLSTLPAADFP 117 + G+ +PAR D+ R L G ++L V +G ++F + TL A DFP Sbjct: 59 AEIEREGSVVLPARLIVDVVRSL-SGPTATLELRPAEQDVELVAGNAQFHIRTLRAEDFP 117 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + +SE ++P + S + + R L G++ ELR VATD +RL Sbjct: 118 PFPEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRMVATDSYRL 177 Query: 178 AVCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSK 235 +V + + L VP + + EL R++ D L V + N + +G+ + +S+ Sbjct: 178 SVKETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSSR 237 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L++G+FP+YR++LP + + L + R ++L+ +K +RL + +L ++A Sbjct: 238 LIEGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLA-QKNAPLRLSFAPGELTVSAQ 296 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 P+ EA E L V + G EIGFN ++ D L ++ +V + L + I+ A Sbjct: 297 TPDIGEARESLPVAFQGEPFEIGFNPDFLRDGLESVGSGDVMLKLISPLRPGLIQSAEDG 356 Query: 356 SAAYVVMPMRL 366 Y++MP+RL Sbjct: 357 GFLYLIMPIRL 367 >UniRef50_C0QD86 DnaN n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QD86_DESAH Length = 371 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 165/343 (48%), Gaps = 9/343 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+ +R+ L + L QV G G + L I ++L++V+ + +T DLE R Sbjct: 1 MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + A+K ++I R P+ ++E + + ++ + + +FP Sbjct: 60 EIESDGIIAINAKKLYEIIREYPDAQVPLNEIENRWVEIGKDNIQYHIVSSDYENFPETP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQD-VRYYLNGMLFET----EGEELRTVATDGH 175 + + A K+++E + D R Y+ G LFE GE LR V+TD Sbjct: 120 LIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVSTDSR 179 Query: 176 RLAV--CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 RL S LP +VI+P+KG+ EL R LD + + + I +++ + Sbjct: 180 RLNSFDASYEGELVLPDENVIIPKKGLSELGRFLDR-EGSVNIGIKDDHLIVQKQNETLM 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 KL++G +PDYRRVL + +E +L R +ILS+E ++ V +EN+L +T Sbjct: 239 IKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENELVVT 298 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 NPE E++E + + Y G E FN Y +D LN++ + V Sbjct: 299 ITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINSDTV 341 >UniRef50_C8XHU9 DNA polymerase III, beta subunit n=2 Tax=Actinomycetales RepID=C8XHU9_NAKMY Length = 408 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 172/355 (48%), Gaps = 19/355 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MKF V R+ L + V+ L RP +P+LG +LL+V+ TL++ G D E+ A + + Sbjct: 1 MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60 Query: 60 ----VQPHEPGATT------VPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLS 109 ++P PG V R +I R LP + + + G ++ + +G +RF+L Sbjct: 61 TLDELEPDAPGGPAGTDRVLVSGRLLAEITRSLP-AKPVDLAVLGPKVSIVAGSARFTLP 119 Query: 110 TLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT 169 T+P D+P L + T+ A + T + D L G+ E +G+ L Sbjct: 120 TMPVEDYPPLPQMPA-ASGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEIDGDRLTL 178 Query: 170 VATDGHRLAVCSM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAH 226 ATD RLAV + P ++L S +V+VP + + + + L GG + V +G + Sbjct: 179 AATDRFRLAVRELGWHPDQENL-STAVLVPARTLADAAKTL-GGAKQVTVALGEGLLGLD 236 Query: 227 VGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 GD T +L+D F YR +LP + +E L ++ R A++++ +RL V Sbjct: 237 AGDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVTDRGHH-LRLQVG 295 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 E L +TA ++ AEE L G E+ I FN SY+LD L + + VR+ T Sbjct: 296 EGALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHADTVRLSFT 350 >UniRef50_C6I687 DNA polymerase subunit III beta n=20 Tax=Bacteria RepID=C6I687_9BACE Length = 374 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 166/347 (47%), Gaps = 7/347 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V L LQ VS + + LPIL L Q+ DGTLS+T +D E MV V + Sbjct: 1 MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFP-- 117 + G V A+ D + +PE ++ + + V+ ++SL A +FP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPEQPLTFDIKPDTYEITVQYQNGKYSLMGQNADEFPQS 120 Query: 118 -NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 L D VE + + I + F+ A ++R +NG+ F+ E++ VA+DGH+ Sbjct: 121 ATLGDNAVRVE--MEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITMVASDGHK 178 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L C + + I+P+K L +L + ++ N + + +L Sbjct: 179 LVRCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMVCRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++GR+P+Y V+P+N + L A R +I S++ ++L + ENQ+ ++A + Sbjct: 239 IEGRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVSAQD 298 Query: 297 PE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD 342 + AEE Y+GA M IGF ++++D+LN + + V + L D Sbjct: 299 IDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVVIELAD 345 >UniRef50_P52023 DNA polymerase III subunit beta n=13 Tax=cellular organisms RepID=DPO3B_SYNE7 Length = 375 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 178/374 (47%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVA 58 MK + L L VS + RP P+L N+LL GT LSLT DL + + A Sbjct: 1 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 Q GA T+PA+ DI LP +++ ++ + G ++ + + A +FP Sbjct: 61 -AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAATLSVGSGQYQMRGISADEFPE 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L QS+ L + + + T F+ + + + L G+ + + + L ATDGHRLA Sbjct: 120 LPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAATDGHRLA 179 Query: 179 VCSMPIGQSLPS--HSVIVPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFIFTS 234 V + P+ +V VP + + +L RM+ G D + + GD TS Sbjct: 180 VVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQYLTS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKI 292 + +DG++P+Y +++P+ ++++ L A R A+L++++ +RL + N+L + Sbjct: 240 RTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENNRLAL 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + +E + G +EI FNV Y+ + L AL ++++ L + S V + Sbjct: 300 AVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTDIQIQLNSNTSPVVLSPL 359 Query: 353 ASQSAAYVVMPMRL 366 Y+VMP++L Sbjct: 360 GPVKITYLVMPIQL 373 >UniRef50_Q3Z759 DNA polymerase III, beta subunit n=5 Tax=Dehalococcoides RepID=Q3Z759_DEHE1 Length = 378 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 179/375 (47%), Gaps = 12/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T +E+L K L V GR TLPI N+L+ DG L L T+LEM + + Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIG-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+TTVPA+ + LP + E+ + + + + ++ R ++ + A DFP + Sbjct: 60 KIEEEGSTTVPAKLLTEFVSSLPNDKIELNLNAKSKALNIKCARFEARITGVDAKDFPPV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + ++ + F+ A + R L G+ E EG L A DG RLAV Sbjct: 120 PKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAADGFRLAV 179 Query: 180 CSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAHVGDFIFTSK 235 +P+ +++ + + VI+P + + EL R+ + + V + I + + S+ Sbjct: 180 YKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIELVSQ 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV------SENQ 289 LV G FP Y +++P++ + + A A I + + VRL + + + Sbjct: 240 LVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNTPGK 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L I+A + E + LD G E +I FN Y+LDVL LK + V + +T S I Sbjct: 300 LTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKAQQVSLEVTSPSSPGVI 359 Query: 350 EDAASQSAAYVVMPM 364 + + + +V+MPM Sbjct: 360 KPVGADNYIHVIMPM 374 >UniRef50_Q6AQJ6 Probable DNA polymerase III, beta chain n=1 Tax=Desulfotalea psychrophila RepID=Q6AQJ6_DESPS Length = 376 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 199/382 (52%), Gaps = 24/382 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 ++ TV ++ LL+ L + T+ IL N+L++ ++G L+LT TDLE+ + + Sbjct: 3 LQCTVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIK-A 61 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQ-LEGERMLVRSGRSRFSLSTLPAADFPN 118 + H G+ T+P++K F+I R G+E I+++ E +++++G+S ++L+ + + ++P Sbjct: 62 EIHGEGSLTLPSKKIFEIVR--ESGSEKISIEEKENSWVVIKAGQSTYNLAGMASDEYPE 119 Query: 119 LDDWQSEVEFTLPQATM-KRLIEATQFSMAH-QDVRYYLNGMLFETEGE----ELRTVAT 172 ++ E FT+ ++ + + LIE FS+A+ Q+ Y L +LFE E E L+ +++ Sbjct: 120 FPEY-DEDSFTVFESYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMISS 178 Query: 173 DGHRLAVCSMPIGQSLPSHSV----IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG 228 DGHRL++ + L + V ++P+KGV E + D D+ + V + + Sbjct: 179 DGHRLSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKDS-IEVSFEHDKLILRNN 237 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAF----ARAAILSNEKFRGVRLY 284 + L G FP Y+ ++ LE ++ + F R + + + F ++L Sbjct: 238 QDVMVVSLKTGEFPQYKAIVDA---VQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQLA 294 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344 + ++ + +++ N + A++ + YSG + +GFN Y +D L A++CE ++ + S Sbjct: 295 IDKDFMVLSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYFIDTLQAMECEKIKAYINSSN 354 Query: 345 SSVQIEDAASQSAAYVVMPMRL 366 S I ++MPM+L Sbjct: 355 SPCLINSDDDPGFTSIIMPMQL 376 >UniRef50_Q1GC42 DNA polymerase III, beta chain n=4 Tax=Lactobacillus delbrueckii RepID=Q1GC42_LACDA Length = 375 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 189/360 (52%), Gaps = 25/360 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV+R + L V + R +PIL + L++ + L +TG++ ++ + L Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADIS----IELS 56 Query: 61 QP-------HEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLP 112 QP G+ V A F +I R LP G E ++ EG ++ + S ++ + ++ L Sbjct: 57 QPVSDDLRVESTGSIVVTAHLFSEIVRKLP-GREFTFEVKEGNQIQITSDKADYVINGLD 115 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A+ +P L + + F+LP T++ LI T F+++ ++ R L G+ F + +++ VAT Sbjct: 116 ASAYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIKAVAT 174 Query: 173 DGHRLAVCSMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 D HRL+ + I PS S+I+P K + EL +++ D ++V +G + IR + Sbjct: 175 DSHRLSQRIVDIAAG-PSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENL 233 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVR--LYVSE 287 F ++L++G +PD R+LP ++ Q +RA++L++ + V+ L V++ Sbjct: 234 SFYTRLLEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVAD 293 Query: 288 NQLKITANNPEQEEAEEILDVTYS---GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344 + ++ N+PE + EE +V +S G ++ I FN Y+ L A ++V + T+S+ Sbjct: 294 QTVLVSGNSPEVGKIEE--EVGFSSLTGRDLTISFNPDYMAAALRASVTDSVIINFTESL 351 >UniRef50_C0R0U9 DNA polymerase III beta (Beta clamp) subunit n=2 Tax=Brachyspira RepID=C0R0U9_BRAHW Length = 375 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 181/373 (48%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ ++K + + G+ I N+L ++ L+LT TD + +R+ L Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRIILD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRS--GRSRFSLSTLPAADFPN 118 GA V A+K I + +P+G E E++ + S G+++ + + DFP Sbjct: 61 DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKINIESENGKTKHLIIGMKTDDFPA 120 Query: 119 LDDWQSEVEFT-LPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + ++ + LP + +I T S+A + + L G+ FE + VATDG R+ Sbjct: 121 YPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFEKTDSKFLAVATDGRRM 180 Query: 178 AVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFTS 234 AV G S S+I+ K + E++ + D +V++G + + VG + F S Sbjct: 181 AVIEREFEGVENGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQVYFQVGKYDFVS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKIT 293 L++G++P++R+V+PK + L A R + N+ + + + L VSE LK+ Sbjct: 240 SLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLKVK 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 N E E+ E +D+ YSG E + +N +Y+ DV+ + E V M+ S +++ Sbjct: 300 GINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEIVTFMVNKDSSPTMVKEIE 359 Query: 354 SQSAAYVVMPMRL 366 + Y++MPM + Sbjct: 360 REDYYYIIMPMSI 372 >UniRef50_Q1B045 DNA polymerase III, beta subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1B045_RUBXD Length = 375 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/359 (27%), Positives = 168/359 (46%), Gaps = 9/359 (2%) Query: 14 LQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPAR 73 L VS + R + +L +LL+ +G L L+ TD+E+ + R + + E G +PAR Sbjct: 14 LALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTR-SPAEVEEAGRLVIPAR 72 Query: 74 KFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQ 132 F DI R LPEG I +E ++RS + + + A DFP L ++ E F + Sbjct: 73 IFSDIVRSLPEGMISIEHDVESGAAVLRSRENEYRIRAYAAEDFPALPEFSEEGSFRVSG 132 Query: 133 ATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLP-SH 191 + ++ S + + R L G+L E LR V TD +RL++ + + Sbjct: 133 EALVETVQKVSSSYSRDETRPVLTGILISFEDSRLRMVTTDSYRLSIKETELATTFEGKR 192 Query: 192 SVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK 250 I+P + + E+ R+ G D + VQ+ N VGD + +KL+ G FP+YRR+LP Sbjct: 193 EAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGTKLIAGNFPEYRRLLPA 252 Query: 251 NPDKHLEAGCDLLKQAFARAAILSNEKFR--GVRLYVSENQLKITANNPEQEEAEEILDV 308 ++ + D + + R + + + V L SE +++ + E EA E + Sbjct: 253 AFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEVVVRSGEVGEAHERIPA 312 Query: 309 TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA--AYVVMPMR 365 + S + I FN Y+LD ++A+ E V + + I + Y++MPMR Sbjct: 313 S-SEDDFTISFNPGYLLDGISAVDTEKVVFKFNEPLKPGLIVPNGEEEPDFRYLIMPMR 370 >UniRef50_C3RP22 DNA polymerase III subunit beta n=4 Tax=Bacteria RepID=C3RP22_9MOLU Length = 369 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 185/370 (50%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M F ++R LL L + + + R LP+L + + D L LTG+D ++ + ++ Sbjct: 1 MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60 Query: 60 --VQPHEPGATTVPARKFFDICRGLPEGAEIAVQ-LEGERMLVRSGRSRFSLSTLPAADF 116 + ++ G + +R DI R + + EI ++ L+G + S+F L+ D+ Sbjct: 61 EDLTIYQTGGVVLNSRYILDIVRKI-DSDEIKIEILDGALTRISGATSKFDLNGTDVLDY 119 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P +D ++ + L ++K +I T+F+ + ++ + L G+ F+ +L ATD +R Sbjct: 120 PRIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINFKAGNRQLECTATDSYR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 LA + + + + + ++ +P+K + E+ ++++ D + + + + + I ++L Sbjct: 180 LAKKIVSLDEDV-TFNITIPQKSLDEISKIIER-DEMIEMYVSDRKVLYVFDNNIIQTRL 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +DG FPD R++P D L+ L A R ++L+NE+ ++L +S+ ++ +++ Sbjct: 238 IDGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKVVLSSYM 297 Query: 297 PEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 E EEILD + Y G + I F+ Y D + A ++++ T + I+D Sbjct: 298 QEIGSVEEILDKSFYKGTPISISFSSKYATDAIRAFNEPKIKILFTGEMKPFIIKDFEKD 357 Query: 356 SAAYVVMPMR 365 +V+P+R Sbjct: 358 DVIQLVLPVR 367 >UniRef50_C7MLD3 DNA polymerase III, beta subunit n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLD3_CRYCD Length = 365 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 96/369 (26%), Positives = 176/369 (47%), Gaps = 8/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 MKF + +E L+ V+ R TLPIL + L+L T+L++ + + A Sbjct: 1 MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIPAF 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 ++ E G +P++ D+ + LPE A + V+ E + S FSL T DFP Sbjct: 61 IE--EEGEAVIPSKLLTDVVKSLPEAA-VHVETTTETASIMCESSSFSLKTFDPQDFPGF 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + + + P +T +++ ++ + R L G+L E LR VATD +RLAV Sbjct: 118 PEVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVHDGMLRMVATDSYRLAV 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + ++ + +L + D G++ L + + N I F ++ ++G Sbjct: 178 TDIDFTTPSEDFTAVISGSFMSDLAGLSDTGES-LTLALAENQIVVTYDGTTFINRRIEG 236 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P Y +++P+ + +L +A R ++LSN K VR V++ + + Q Sbjct: 237 NYPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQISTASQ 295 Query: 300 E--EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + EA E L G + EI FN YV+D L++++ E+V++ L S+ + ++ Sbjct: 296 DVGEAHETLGAKIQGEDEEIAFNFGYVIDGLSSIETESVQLELQGSMKPGILRATEQENF 355 Query: 358 AYVVMPMRL 366 Y++MP+RL Sbjct: 356 LYLIMPVRL 364 >UniRef50_B9K2Q2 DNA polymerase III beta subunit n=1 Tax=Agrobacterium vitis S4 RepID=B9K2Q2_AGRVS Length = 378 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 169/368 (45%), Gaps = 9/368 (2%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V R +L L V + R +PIL N+LL L L+GT++ +E+ L++ Sbjct: 7 FRVHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLES 66 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGER--MLVRSGRSRFSLSTLPAADFPNLD 120 T+ + DI + E AEI + R + V+SGRSRF L+TL A FP + Sbjct: 67 ASGNPLTLSGKALLDIVKSFSEVAEIEFSFDDLRGQVRVKSGRSRFLLATLHADQFPTIA 126 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGE-ELRTVATDGHRLA 178 S + ++ I ++++ R YL+G+ EGE ++ VA DGH LA Sbjct: 127 SLASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNLA 186 Query: 179 VCSMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 V P G + P I+P K + + R+ +V+I I+ D TSKL Sbjct: 187 VVRFPCEAGTTFPG--AIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKL 244 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITAN 295 +D +PDY +PK+ + L A R ++ + R ++L S L+++ Sbjct: 245 IDAVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMA 304 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + EEA E + Y+G ++ IGFN Y+ D L+++K +V + L S + Sbjct: 305 ATDGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTDVAINLLTESSPGLLTPTVGT 364 Query: 356 SAAYVVMP 363 YVV P Sbjct: 365 DELYVVYP 372 >UniRef50_Q252K1 DNA polymerase III beta chain n=2 Tax=Desulfitobacterium hafniense RepID=Q252K1_DESHY Length = 385 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 175/368 (47%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L+ + V + + TLP+L ++++ +L TDLE+ + V Sbjct: 19 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVP-A 77 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q + G +P+R F D+ R LP+ I ++L+ + + + S SL +FP L Sbjct: 78 QVEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDVINIHYNESDLSLRGYDPEEFPLLP 136 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D F LP + K +I+ T F+ + ++ R G L + E LR +ATD HRLA Sbjct: 137 DLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRLIATDTHRLAYR 196 Query: 181 SMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I I+P K + E+ R+L D L ++ I G S+L++G Sbjct: 197 IAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSRLIEG 256 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG--VRLYVSENQLKITANNP 297 +FP+Y++V+P++ + L + + RA++L+ + ++L V +L I + Sbjct: 257 QFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSIDQTS- 315 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E + E ++V G +++I FN ++LDVL + E + L+ S S I + Sbjct: 316 ELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDSEEIVFELSGSYSPGIIRPVDDPNY 375 Query: 358 AYVVMPMR 365 Y+ +P+R Sbjct: 376 LYLALPVR 383 >UniRef50_C8W8K5 DNA polymerase III, beta subunit n=5 Tax=Coriobacteriaceae RepID=C8W8K5_ATOPD Length = 366 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 181/377 (48%), Gaps = 22/377 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV + L L VS +G TLPIL + L+ +G L L +DL + + ++A Sbjct: 1 MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERML-VRSGRSRFSLSTLPAADFPN 118 E G T V + +I + LP+ A + EG ER L V RS F L+TL A D+ Sbjct: 60 NVEEEGETVVSGKVIQNIVKNLPDAA---ITFEGGERTLSVICQRSSFRLNTLSAHDWAQ 116 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 ++ E LP + +++ + + R L G+ E +R VATD RLA Sbjct: 117 FPEFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRLVATDSFRLA 176 Query: 179 VC----SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS--NNIRAHVGDFIF 232 VC P G+S S+I+ + +++ M + +V IG+ N + G+ Sbjct: 177 VCDSNTDTPAGESF---SIIISGEVFHDVLSMRSMTE---KVLIGTTDNQVIFQFGNTTH 230 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN--QL 290 S+ ++G FPDY+++LP + ++ + A R ++++ VR V + ++ Sbjct: 231 ISRKIEGHFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIALAN-PSVRFDVDADGKEV 289 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCEN-VRMMLTDSVSSVQI 349 K++A++P+Q E+ E ++ G + I N YV D +NA ++ +R+ L Sbjct: 290 KLSASSPDQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSKDLLRLELQGPSQPAIF 349 Query: 350 EDAASQSAAYVVMPMRL 366 + + Y++MP+RL Sbjct: 350 KSNGKVNYLYLLMPVRL 366 >UniRef50_P72856 DNA polymerase III subunit beta n=43 Tax=Cyanobacteria RepID=DPO3B_SYNY3 Length = 391 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/390 (27%), Positives = 176/390 (45%), Gaps = 25/390 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGT-LSLTGTDLEMEMVARVA 58 MK + L L VS + RPT P+LGN+LL+ AD L LT DL + + + Sbjct: 1 MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGER-----MLVRSGRSRFSLSTLP 112 + G T+PA+ DI LP+G +A+ +G+ + S RF + L Sbjct: 61 -ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLD 119 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A DFP L + LP AT+ + F+ + + + L G+ + G+ L AT Sbjct: 120 ADDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGVHIKGSGDSLEFAAT 179 Query: 173 DGHRLAVCSMP------------IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS 220 DGHRLAV P G L +V +P + + EL RM+ N V + Sbjct: 180 DGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLVV 239 Query: 221 NNIRA--HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF 278 N+ + +GD TS+ ++G +P Y +++P+ + + L + R ++L+++K Sbjct: 240 NDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQKN 299 Query: 279 RGVRLYVSE--NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 V + NQL++ + EE + G +I FN+ Y++D L AL ++ Sbjct: 300 NLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPSNDI 359 Query: 337 RMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +M L + V Y+VMP+RL Sbjct: 360 QMQLNEGNQPVIFTPLGGLKMTYLVMPVRL 389 >UniRef50_UPI0000382B81 COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382B81 Length = 233 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 144 FSMAHQDVRYYLNGMLFET-----EGEELRTVATDGHRLAVCSMPI---GQSLPSHSVIV 195 F+++ ++ RYYLNG+ E L VATDGHRLA +P + +P +I+ Sbjct: 6 FAISTEETRYYLNGVYLHAPDGAERAEGLVGVATDGHRLARARLPRPEGAEGMPG--IIL 63 Query: 196 PRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDK 254 PRK V E+ ++ DG P V + + IR D TSKL+DG FPDY RV+P++ Sbjct: 64 PRKLVTEIGKLADGDGGPAFEVALSPSKIRIGRDDTTLTSKLIDGTFPDYERVIPRDNPH 123 Query: 255 HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAE 314 L L A R +++E+ R V+L + +++ +T NNP+ EA E D + GA Sbjct: 124 TLALDGKALAPALDRVTTIASERGRAVKLALDADRIVLTQNNPDAGEATEEADAKFDGAP 183 Query: 315 MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPM 364 M+IGFN Y+ ++L L E+V L D+ + V+MPM Sbjct: 184 MQIGFNGKYLAEILALLDSEHVEARLGDAGAPTLWRRRGDALLTVVLMPM 233 >UniRef50_B8HRT6 DNA polymerase III, beta subunit n=2 Tax=Chroococcales RepID=B8HRT6_CYAP4 Length = 374 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/377 (27%), Positives = 181/377 (48%), Gaps = 16/377 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + L L +S + +PT P+ N+LL+ L L+ DL + M + Sbjct: 1 MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q PG+ T+PAR F DI LP A I + +E + + G + + L A +F L Sbjct: 60 QTEVPGSFTLPARFFNDIVSRLP-NAPITIAVESPTVTLACGAGHYQMQGLEAEEFTALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D LP + + ++AT F+ + + + L G+ + + L ATDGHRLAV Sbjct: 119 DLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEFAATDGHRLAVA 178 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI------- 231 + P SV VP K + EL RML G P+ + + + + V +F Sbjct: 179 YGQPEEFSPDTPLSVTVPAKALRELERML--GRTPVALTLRCDQTQV-VFEFATEQGMAR 235 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQ 289 +S+L++G +P+Y+++LP+ ++ + R A+L+ +K V++ + Q Sbjct: 236 LSSRLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQQ 295 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L ++A P+ EE L SG ++E+ FNV Y++D L A+ V++ + + + V + Sbjct: 296 LDVSAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTASEVQIQMNAATAPVIL 355 Query: 350 EDAASQSAAYVVMPMRL 366 + Y++MP++L Sbjct: 356 SPLSGTKMTYLIMPIQL 372 >UniRef50_B3DWG7 DNA polymerase sliding clamp subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWG7_METI4 Length = 371 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 16/375 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLE----MEMVA 55 MKF+VE++ + L + + R TLPIL ++LL A L TDL+ +E+ A Sbjct: 1 MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELTA 60 Query: 56 RVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 V E G TT+PAR+ I R L + + S RS F L+ LP D Sbjct: 61 NV-----EEEGTTTLPARRLLTIVRELDSDQLSWKTNSNHQTTLSSDRSFFQLNGLPDDD 115 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P + E ++ Q +++++ +++MA + R LNG F + TDG Sbjct: 116 YPKFFPERREEGLSISQGKIRKMLRMVEYAMADES-RPALNGAWFSIKSGRFEVAVTDGK 174 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA + IVP K V+E+ R+++ D L++ + SN I + + +F SK Sbjct: 175 RLAYTFEEVENESFEAEGIVPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNILFFSK 234 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARA---AILSNEKFRGVRLYVSENQLKI 292 L +G++P++++V+PK + + A R AI + V ++ N+L + Sbjct: 235 LTEGKYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGTNELVL 294 Query: 293 TANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD-SVSSVQIE 350 + PE +A E + + + G I FN Y+++ L ++ E+V + + S Sbjct: 295 SCQAPEIGQARETISLKAFQGEAFSIPFNPLYLIEPLREMEKEDVILEFVNPSTKGNPCL 354 Query: 351 DAASQSAAYVVMPMR 365 + YV+MP++ Sbjct: 355 ITEGTNFVYVLMPIK 369 >UniRef50_Q7NGD9 DNA polymerase III beta subunit n=1 Tax=Gloeobacter violaceus RepID=Q7NGD9_GLOVI Length = 376 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/377 (27%), Positives = 181/377 (48%), Gaps = 14/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 MK + L + L V + RPT PIL N+LL+ GT++LTG DL++ + R A Sbjct: 1 MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 Q G TT+PAR DI LP + E + + G S++ + A +FP Sbjct: 61 AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSEDNAISLVCGSSQYQVQGASAEEFPK 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L + LP + ++ + F+ + + + LNG+ + E + VATD HRL+ Sbjct: 121 LPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEFVATDAHRLS 180 Query: 179 VCSMPIGQSLP-----SHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVGDFI 231 +LP + + ++P + V EL ++L GD+ + V+ + + Sbjct: 181 FYRTDF--TLPEAGTQAIAAVLPVRSVRELEKILGAQAGDS-VEVRFDEKQMIFQFPNQT 237 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV--SENQ 289 T++L+ GR+PDY+++LPK + + L R A+L+++K V+L SE+ Sbjct: 238 LTTRLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSEHL 297 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + ++ + P+ E + V YSG + + FNV Y+L+ L A+ +V L + + Sbjct: 298 MTVSVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATDVSFCLNGASDPAVL 357 Query: 350 EDAASQSAAYVVMPMRL 366 + + Y++MP+ + Sbjct: 358 KPVGDGNYQYLIMPVSI 374 >UniRef50_C8VV98 DNA polymerase III, beta subunit n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VV98_DESAS Length = 367 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/375 (26%), Positives = 188/375 (50%), Gaps = 19/375 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +++LL +Q V + + LPIL +L + D TL + TDLE+ + + V Sbjct: 1 MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML----VRSGRSRFSLSTLPAADF 116 + E G +P++ DI R LP+ ++ E L ++ S+ ++ A +F Sbjct: 60 KVIETGEIVLPSKYIIDIIRRLPDTV---IEFESNDYLNSITIKYKNSQANIHGFAADEF 116 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P L F + + K+++ T F+ + R G+ F+ +E + VATD HR Sbjct: 117 PMLPPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKMVATDTHR 176 Query: 177 LAVCS--MP-IGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIF 232 LA+ + +P I Q LP +IVP K + EL+++L+ D +++ + N I + + Sbjct: 177 LAMITEHLPLIKQELP--GIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINI 234 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 S+L+ G++P+Y V+PK+ ++ Q+ RA++LS+ + +R+ + + Sbjct: 235 ISRLIKGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIV 294 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS--VQIE 350 ++N E E + V + G ++I FN Y++D L A+ E + + L+ ++ ++ E Sbjct: 295 ISSNNEAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDSEEIYLELSGPINPCLLRTE 354 Query: 351 DAASQSAAYVVMPMR 365 D S +++P+R Sbjct: 355 DRNYLS---ILLPVR 366 >UniRef50_C6X4N3 DNA polymerase III beta subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4N3_FLAB3 Length = 385 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 168/347 (48%), Gaps = 7/347 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V L K L VSG + + PIL N L ++ + L +T +D E +V + V Sbjct: 10 MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLE-V 68 Query: 61 QPHEPGATTVPARKFFDICRGLPE-----GAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + + G VPA+ F D + E + A G + + + F+++ A D Sbjct: 69 RSDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAED 128 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L ++ + + + + T F+ ++ +R + G+LF+ + +E V+TD H Sbjct: 129 YPELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNFVSTDSH 188 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL V + I+P+K + +L + + ++ N + G+ I+ + Sbjct: 189 RLVVYKRTDLMNAEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIWICR 248 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG++P+Y V+PK L +LL + RA+I+SN+ VR +S N L + A Sbjct: 249 LIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHLHAE 308 Query: 296 NPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 + E +A+ + Y+G ++ IGF+ ++ ++L+ L +++ M ++ Sbjct: 309 DTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSSDDITMKMS 355 >UniRef50_C1ZD41 DNA polymerase III, beta subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD41_PLALI Length = 377 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 181/379 (47%), Gaps = 21/379 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ-VADG-----TLSLTGTDLEMEMV 54 M+ R L V + R IL N+ L VA G + LTGTD + + Sbjct: 1 MQLVCPRAVLSAAFTVVGAVVPSRTPREILKNVKLDAVASGPGATSSAQLTGTDGDGTSI 60 Query: 55 ARVAL--VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLP 112 R L V+ G+ +P ++ I R L + +++++ G+ + +R G S F LS Sbjct: 61 -RFDLTDVECKVGGSALLPTQRLTSILRELTDDT-VSLEVNGDAVWLRCGGSEFRLSAED 118 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 ADFP ++ E F +P +RLI+ T F+ + RY L G+L E +++R AT Sbjct: 119 PADFPTAPEFVEEDYFVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRMAAT 178 Query: 173 DGHRLAV----CSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 D RLAV CS+ GQ + S +VP K + + + L + + I +N+I Sbjct: 179 DSRRLAVAVGACSVE-GQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDISIRA 237 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 G T++LV GRFPDYR+V+P + ++ A ++ +++NE+ RGV +E Sbjct: 238 GRASITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFTFAE 297 Query: 288 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV--RMMLTDSVS 345 L++ + + +++ L + Y G+E+ I F+ +V D L L+ + ++ D Sbjct: 298 GTLRLASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFLRVLEGSSTVHLKLINDESP 357 Query: 346 SVQIEDAASQSAAYVVMPM 364 V D YV+MP+ Sbjct: 358 GVFTTD---DDYTYVIMPL 373 >UniRef50_B8CZN5 DNA polymerase III, beta subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZN5_HALOH Length = 367 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 180/370 (48%), Gaps = 9/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEM--EMVARV 57 M+FT+ ++ + + V + + T+PIL + L+ D L + TDLE+ E + Sbjct: 1 MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVKA 60 Query: 58 ALVQPHEPGATTVPARKFFDICRGLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 ++ G +PA I R LP+ L+ + SRF + A +F Sbjct: 61 DIITE---GKIVLPASHLSGIIRELPDDNINFKADLDKYEAELTCLSSRFKIKGFDADEF 117 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P L + + TL + RLI+ +FS + + L G + ++R VAT+ +R Sbjct: 118 PQLPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVIDSGKIRMVATNTYR 177 Query: 177 LAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 L++ S+ + G VI+P + EL +LD D + + IG N +R + + S+ Sbjct: 178 LSLSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVSR 236 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 +++G+FP+Y++VLPK + + + L ++ R ++++ + + V +N++ IT+ Sbjct: 237 VIEGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITSQ 296 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + E+ A E +++ G E I + Y+LDVL L + V + L ++ + ++ S Sbjct: 297 DSEEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLNDDVVILELIGPLNPLTLKKENSD 356 Query: 356 SAAYVVMPMR 365 Y+VMP+R Sbjct: 357 DFIYLVMPVR 366 >UniRef50_A4V7F9 Putative DNA polymerase subunit n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7F9_PSEFS Length = 369 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 101/373 (27%), Positives = 181/373 (48%), Gaps = 11/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 MKF+++ L L+ V+ + R + G+ L+ V L L+ + + +M + Sbjct: 1 MKFSIKCSDLAHYLKTVA-RVPQRKATDVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59 Query: 59 LVQPHEPG-ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 L G A VPA KF + L + A +++Q ++++ + RSRF+L+T+PA FP Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEPKLVISAARSRFTLATIPADHFP 119 Query: 118 NLDDW--QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 ++ QS+ E + +T+ + F A DVR LNG+LF+ + + A DG Sbjct: 120 VMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTLAAADGL 179 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL V +P+ P + I+P + ++ + + G +RV + R + +K Sbjct: 180 RLGVTEVPV-TGEPMQNFILPSSCIEDVCQFV--GTGSVRVSTSGSMARFTREGGVLHTK 236 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGC-DLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 LV+G+FPDYR++L + D A AR +LS VRL VS + I + Sbjct: 237 LVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSAESISIQS 296 Query: 295 NNPEQEE-AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + E+ A+++L Y+ +EIGFN +++ +L + ++ + + S + Sbjct: 297 VGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEIDVIFSGAASGTLLRARD 356 Query: 354 SQSAAYVVMPMRL 366 S ++V+MP+RL Sbjct: 357 LPSHSFVLMPVRL 369 >UniRef50_C7M837 DNA polymerase III, beta subunit n=7 Tax=Bacteroidetes RepID=C7M837_CAPOD Length = 374 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 165/338 (48%), Gaps = 4/338 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V +LLK LQ G + T+PIL N L +++ +L+++ +DLE + + V Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G+ V A+ DI + E + E + + S ++L+ L +FP Sbjct: 60 ESDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNVIEISSTTGNYTLAYLDGEEFPRPV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + T+ + ++ T F+ + D+R ++G+LF+ L V TD H+L Sbjct: 120 ALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTFVGTDAHKLVKY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ + I+P+K + L +L G + + V+ +N + D F +L+DG+ Sbjct: 180 ERLDIKANEAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICRLIDGK 239 Query: 241 FPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE- 298 +P+Y V+PK NP+K L + R ++ SN+ VRL ++ + L I+A + + Sbjct: 240 YPNYDAVIPKENPNK-LILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAEDVDY 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 + EE Y G ++EIGFN ++ +++N L + + Sbjct: 299 SNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEI 336 >UniRef50_B0CDM3 DNA polymerase III, beta subunit n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CDM3_ACAM1 Length = 372 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 173/372 (46%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L L +S + PT P+L N+LL L LT DL + + +A Sbjct: 1 MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA T+PAR DI LP +I V+ + + + + + L A +FP L Sbjct: 60 DVEETGALTLPARFLNDIVSRLP-NCDIEVETDDTAVTLTCDSGHYQMQGLVAEEFPGLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 LP ++AT F+ + + + L G+ T TDGHRLA+ Sbjct: 119 SLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGLHLNTSESGFEFATTDGHRLAIA 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN----IRAHVGDFIFTSKL 236 + P + ++ +P K + EL RML + + ++ +N + G + +L Sbjct: 179 NFPDLVTPEPMTMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTERLSCRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV--SENQLKITA 294 ++G++P Y +++PK ++ + LL + R A+L+ K +RL + +E + ++A Sbjct: 239 LEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQNVALSA 298 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 PE EE L SG +++I FNV Y+ D L AL + V++ + + + + Sbjct: 299 EAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQEVQLQMNSATMPAVLSPLSG 358 Query: 355 QSAAYVVMPMRL 366 + Y++MP+++ Sbjct: 359 RQITYLIMPIQI 370 >UniRef50_Q50790 DNA polymerase III subunit beta n=27 Tax=Corynebacterineae RepID=DPO3B_MYCTU Length = 402 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 178/393 (45%), Gaps = 32/393 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 + F + RE + V+ L RP +P+L +LL +D L+++G D E+ A+V Sbjct: 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVG-A 71 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + PG+ V R DI R LP + V +EG R+ + G +RFSL T+P D+P L Sbjct: 72 EIVSPGSVLVSGRLLSDITRALPN-KPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLP 130 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E LP I + D L G+ E GE + ATD RLAV Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 Query: 181 SMPIGQSLPS--HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF------ 232 + S P +V+VP K + E + GG + +R+ +G+ G Sbjct: 190 ELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSD-VRLSLGTGPGVGKDGLLGISGNGKR 248 Query: 233 -TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 T++L+D FP +R++LP L +A A++++ + VR+ ++ ++ Sbjct: 249 STTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQ-VRMEFADGSVR 307 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS-----VSS 346 ++A + AEE L V Y+G + I FN +Y+ D L++L+ E V T + + Sbjct: 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 Query: 347 VQIED-------------AASQSAAYVVMPMRL 366 V +D A S Y++MP+RL Sbjct: 368 VSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400 >UniRef50_B1C8Z4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8Z4_9FIRM Length = 368 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/370 (27%), Positives = 180/370 (48%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M V+R LK L VS R + G +LL+ D LSL T+ E++ ++ + Sbjct: 1 MNIKVDRNEFLKALITVSKATTLRNVGSLEG-ILLESYDDVLSLYATNKEIQ-ISTIIDA 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + G + +R DI R G E+ + E + + S+F+++ + FPN Sbjct: 59 KVIREGKLLINSRILSDIVRSFDNG-EVEIDADENNNIKLTCLNSKFNITAMDHRTFPNK 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQD-VRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + ++ +I+ T F+ A D V L G+L E E+++ VA DG R+A Sbjct: 118 EVYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKFVAIDGFRMA 177 Query: 179 VCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + S + ++ +VP + EL ++L D+ + + I A++G S L+ Sbjct: 178 IRSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLVSSLL 237 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANN 296 G+F DY +LPK ++ + L A RAAI+S+E + + L+ ++N L +T+ + Sbjct: 238 QGQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLLTSKS 297 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 EE +++ SG +++I FN YV+D L ++ E V + S S I+ +S Sbjct: 298 A-YGNVEENININLSGEDLDISFNSRYVIDALKVIEDEKVILEFNSSNSPCLIKPVSSNK 356 Query: 357 AAYVVMPMRL 366 Y++MP+R+ Sbjct: 357 FTYLIMPVRI 366 >UniRef50_Q04WF6 DNA-directed DNA polymerase, beta subunit n=7 Tax=Leptospira RepID=Q04WF6_LEPBJ Length = 373 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 180/380 (47%), Gaps = 21/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V LK + V G + R IL NL ++ + + L+ TDLE+ + ++ Sbjct: 1 MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVR----SGRSRFS--LSTL 111 + + G+ ++PA++ + + E + LE G+ +V SG++ + +S + Sbjct: 60 EVIQAGSISLPAKQLSSFFKTI-HFEETILSLEESDGDSSIVYITDASGKNDYKSKISGM 118 Query: 112 PAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 A + + + P + +I T +++AH+D R+ NG+ +G +L V Sbjct: 119 DAEEIKTISKVSPSQISSFPSNLINDMIRKTSYAIAHEDQRFIFNGLYMIPDGNKLTFVG 178 Query: 172 TDGHRLAVCSMPIGQSLPS-----HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAH 226 TDG RL C I ++LPS S+IVP K V E+ +M+ + + + + I A Sbjct: 179 TDGRRL--CK--IERTLPSPLQFKDSIIVPAKAVREISKMIATSETG-NLGLIDSQIYAS 233 Query: 227 VGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 + KL++G FP+Y +V+PK+ + + + + + + E R V+L S Sbjct: 234 ANNIELLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSRQVKLTFS 293 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 +N L + A EA + YSG E+ I F Y++D+ ++ +++ +DS S Sbjct: 294 KNNLNLFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSIDDNEIKIEFSDSSSP 353 Query: 347 VQIEDAASQSAAYVVMPMRL 366 V +D + V+MPM+L Sbjct: 354 VIFKDPSDPEFISVIMPMKL 373 >UniRef50_C8NI23 DNA polymerase III, beta subunit n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NI23_9LACT Length = 385 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 171/343 (49%), Gaps = 19/343 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MKF+V R+ LK L V + + T+PIL + L ++ L+LTG+D E+ + + + Sbjct: 1 MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60 Query: 60 -----VQPHEPGATTVPARKFFDICRGLPE---GAEIAVQLEGERMLVRSGRSRFSLSTL 111 + EPG+ +PAR F +I + LP E QL+ + +G + F+L+ L Sbjct: 61 DEELQLTVQEPGSIVLPARFFGEIVKKLPLNLFSIETNDQLQAT---ITAGSASFTLNGL 117 Query: 112 PAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 A D+P L + + T+P +++I T +++ + R L G+ + +L+ VA Sbjct: 118 SAVDYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGIHMVIKDNKLKAVA 177 Query: 172 TDGHRLAV----CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 TD HRL+ MP G + + +P K ++EL R++DG + + I N I Sbjct: 178 TDSHRLSQRIIPLQMPAGSDALTFEMTLPGKTLLELSRIIDGLET-IDFAITDNQILFQT 236 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVS 286 F S+L++G +PD R++ + + L A RA+++S+ +K L +S Sbjct: 237 ETLSFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKNNIATLTLS 296 Query: 287 ENQLKITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVL 328 ++ +T +PE EE + V + GA +EI FN Y+ + L Sbjct: 297 PERILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEAL 339 >UniRef50_A4XFI2 DNA polymerase III, beta subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFI2_CALS8 Length = 367 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/374 (26%), Positives = 173/374 (46%), Gaps = 17/374 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V++ L + +V +L +L++ A+ + T D+ M+M Sbjct: 1 MRFVVDKSTLQDNISKVIPAAASTKVTSVLECVLIE-AEDVVVFTTNDMRMQMQTEFQ-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E GA V A+ DI + LP G +I + E + +R + F L TL DFP +D Sbjct: 59 EILERGAALVKAKLLSDIVKKLPSG-DIEIIREDNEVKIRCQKIEFRLPTLDPLDFPKMD 117 Query: 121 ----DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 D E + M ++I F+ + + R G+LFE EG+ + V DGHR Sbjct: 118 RKPIDSFCEFAANEFEDAMDKVI----FATSKDETRPTFTGVLFEREGDSVNLVGMDGHR 173 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSK 235 LA+C + + S IVP + + ++ +++D + +RV N +G Sbjct: 174 LAICKLKPIEVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIVT 233 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK---FRGVRLYVSENQLKI 292 L+ GRF DY+ V+P + D+L+ RA+I+S ++ + V VS ++ Sbjct: 234 LISGRFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFRV 293 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + + E++L G ++ IGFNV Y LDVL L V + +T S ++ Sbjct: 294 MSYSTDGRYEEDVL-CDVEGKDIRIGFNVKYFLDVLKVLDG-GVDIYITSLTSPSVVKQQ 351 Query: 353 ASQSAAYVVMPMRL 366 + Y+V+P+++ Sbjct: 352 GDEGYIYLVLPVKM 365 >UniRef50_C1TP63 DNA polymerase III, beta subunit n=2 Tax=Synergistaceae RepID=C1TP63_9BACT Length = 386 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 5/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+++ +K + TL +L +L DG ++L TDL+ + + V Sbjct: 1 MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG +P + ++ + P E ++ SGR+R+ +T PA DFP L Sbjct: 61 TIDEPGKAVLPIKVVGELFKKSPTSIFTVEVAERGTGILLSGRNRYRFTTYPADDFPPLP 120 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMA-HQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + +F L + + R+++ + + ++ YL L + + E V+TDG RL+ Sbjct: 121 SPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGECHCVSTDGRRLS 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAH--VGDFIFTSKL 236 + + + P +++P V E +R+L G L+V + + + + F+ + Sbjct: 181 LSKAYVDKENPEQDMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQLDSLEFSVRR 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE-NQLKITAN 295 VD FP+Y R+L N L+ A R ++ + R V L +S LK++ Sbjct: 241 VDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSPGGDLKLSGR 300 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 PE EA EI+D G +++ FNV +++D L A + V + + + Sbjct: 301 APEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKVSLSFNGQEGQMMMLRPNES 360 Query: 356 SAAYVVMPMRL 366 Y++MP++L Sbjct: 361 DFLYMLMPIKL 371 >UniRef50_B0S417 DNA polymerase III beta subunit n=2 Tax=Finegoldia magna RepID=B0S417_FINM2 Length = 367 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 187/367 (50%), Gaps = 7/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ LLK + + R T+ IL +L + L L TDLE+ + R A Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTR-ANC 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +E G + + +I R LP+ A+I ++++ + ++ + F++ + +FP+L Sbjct: 60 EIYEKGQIVINSSMIGNIIRKLPD-ADIYIEVDDNNINIKCLSTEFNIQGQDSNEFPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +V+ TL Q+ ++ I T F+ + R L G+LF + + VA DG+R+++ Sbjct: 119 YIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEFVALDGYRVSLD 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S IVP + + E+ ++L+ G+ L + G NI + + S+L+DG+ Sbjct: 179 CLS-NVSEFEMKAIVPARALNEVYKILEEGEITLNIITG--NIIFKLENTDVYSRLIDGQ 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPEQ 299 + DY +V+ ++ + L+ A RA++++ E K V+L S N+L I++ N + Sbjct: 236 YIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS-NTDI 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + +E + G ++ I FN Y+LD L + +++ + ++ S+ + + + Y Sbjct: 295 GKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVIDDDDITLNMSGSLRPMVFKPLNDTNYTY 354 Query: 360 VVMPMRL 366 +V+P++L Sbjct: 355 LVLPVKL 361 >UniRef50_B8GBZ8 DNA polymerase III, beta subunit n=5 Tax=Chloroflexaceae RepID=B8GBZ8_CHLAD Length = 378 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 183/379 (48%), Gaps = 15/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGR-PTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK T ++ L + L +S + G+ TLP+L N+LL +G L LT T+LE+ + R Sbjct: 1 MKLTCMQDDLKRGLAAISHAVAGKSATLPVLANVLLATDNGRLKLTATNLEVG-INRWIG 59 Query: 60 VQPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + GA VPA+ D+ GLP + + + + + + V GR ++ + A +FP+ Sbjct: 60 ANIAQAGAVAVPAKLLADVVGGLPNDTVTLTLDPKTQTLRVECGRFVSNIKGVDADEFPS 119 Query: 119 LDDWQSEVEF-TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + +LP + IE F+ A + R L G+L T +L VA DG RL Sbjct: 120 LPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVLVRTRDRQLTLVAADGFRL 179 Query: 178 AVCSMPIGQSLPSHSV--IVPRKGVIELMRMLDG--GDNPLRVQIGSNNIRAHVGDFIFT 233 A+ ++P+ +++ +H+V ++P + + EL R++ GD + G +++ H + Sbjct: 180 AMRTIPLAETV-AHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTENTEVV 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV------SE 287 S+L++GRFPD+ R++P+ L +A A+ ++ V+L + Sbjct: 239 SRLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAGEMGP 298 Query: 288 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 ++ ++AN+ E + LD + +G I NV ++ D + A+ + + + S Sbjct: 299 GRIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGSNQIAFEMQSAQSPA 358 Query: 348 QIEDAASQSAAYVVMPMRL 366 + ++VMPM + Sbjct: 359 VFKPVGHDGYIHIVMPMSM 377 >UniRef50_A5KS03 DNA polymerase III, beta subunit n=6 Tax=candidate division TM7 RepID=A5KS03_9BACT Length = 366 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 180/374 (48%), Gaps = 18/374 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK TV +E+L K L V G+ LPIL N+LL+ + L + T+LE+ + + Sbjct: 1 MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIG-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + GA TVPAR + LP+G + + +EG + + +G +++ + A +FP L Sbjct: 60 KVAQNGAITVPARLMAEFISNLPKG-NVELSVEGAHLHIAAGAYSSTINGMEAEEFPELP 118 Query: 121 --DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + +++ +P MKR + T + + R +L G+ + +L ATDG+RL+ Sbjct: 119 TINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFAATDGYRLS 178 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 IG IVP + +++R+L + + + +R +GD TS+L+D Sbjct: 179 --ERKIGAMKEDLKXIVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVTSRLID 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFAR----AAILSNEKFRGVRLYVSENQLKITA 294 G+F DYR+++PK D L K+ F+R A++ + E + L + + + Sbjct: 237 GQFVDYRQLIPKGAD----IASVLRKEEFSRITKIASLFARESGGSITLKTDKEKGTLAI 292 Query: 295 NNPEQEEAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 ++ + E + A+ ++ N Y+L+ L A+ ++ + +S ++ A Sbjct: 293 HSIASQLGENTSEAEAKVSADGQVTLNSRYLLEALGAIDGSSITFRFSGKLSPCRLT-AT 351 Query: 354 SQSAAY--VVMPMR 365 A Y ++MP++ Sbjct: 352 DDEATYQHIIMPLK 365 >UniRef50_B9ML38 DNA polymerase III, beta subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9ML38_ANATD Length = 368 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 173/370 (46%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V++E L + +V IL +L++ D + T D++M+M Sbjct: 1 MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAEDRII-FTTNDMKMQMQTEFE-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G+ + A+ DI + LP G ++ V E + +RS + F L TL DFP +D Sbjct: 59 EILERGSALLKAKLLSDIVKKLPSG-DVEVIREENEVKIRSQKIEFRLPTLEPLDFPKMD 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRLAV 179 SE + ++ F+ + + R G+LFE E ++ + V DGHRLA+ Sbjct: 118 RKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFEKEDDDFVNLVGMDGHRLAI 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + S S IVP + + ++ +++D + +RV N +G L+ Sbjct: 178 CKIKPVAVEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVILTLIS 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE-NQLKITANNP 297 G+F DY+ +P + D+L+ RA+I+S ++ ++ + E N + T + Sbjct: 238 GKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFTVKSV 297 Query: 298 EQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + EE + + G ++ +GFNV Y LDVL L E + + +T S ++ + Sbjct: 298 SADGRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDGE-INLFITSQTSPSIVQKPDDPN 356 Query: 357 AAYVVMPMRL 366 Y+V+P+++ Sbjct: 357 YIYLVLPIKM 366 >UniRef50_C0WAM5 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAM5_9FIRM Length = 372 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 173/372 (46%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ E L K + V + P PI + + + TL L D+ M +V V Sbjct: 1 MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSM-KKVLEV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 +E G VPA+ D+ Q EG + + + S + + + + D+P+ Sbjct: 60 NGNEDGVILVPAQSLGDLLAKFSTDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPSF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 +++ E TLP+ + +LI T ++ + + R G+ E +G+ + V T+ HRLA+ Sbjct: 120 PEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVFMEKKGQHITCVGTNTHRLAI 179 Query: 180 CSM-PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI--GSNNIRAHVGDFIFTSKL 236 S P +S+++P + + E+ L G+ P V I + I +G S L Sbjct: 180 KSADPETADDSEYSLLIPARVLKEIANNLT-GELPEDVAIIQKDSKILVRMGSLSLVSSL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G FPDY R +P + L++A R ++ + ++ +RL + +++ +++ Sbjct: 239 IEGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSSAA 298 Query: 297 PEQEEAEEILDVTYSGAE--MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 ++ + EI++ +G E + I FN Y++D + C+ V + S+S ++ Sbjct: 299 SDRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISCDQVVLETNSSLSPARMMPVDD 358 Query: 355 QSAAYVVMPMRL 366 S Y++ P+R+ Sbjct: 359 PSYTYIITPVRV 370 >UniRef50_Q1J2H7 DNA polymerase III, beta subunit n=4 Tax=Deinococci RepID=Q1J2H7_DEIGD Length = 360 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/348 (28%), Positives = 174/348 (50%), Gaps = 12/348 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V ++ L + L + + R + P+L L ++ ++ L+L+GT+LE+++ V Sbjct: 1 MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + P + +PA F I R L G + ++L G + VR+G S F L T +P L Sbjct: 60 EVQAPQSFVIPAHLFAQIVRNLG-GELVELELTGGELSVRAGGSDFKLQTGDLEAYPPLS 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + +L A + R + + +++ +++ + G+ E R VA+DG+R+A+ Sbjct: 119 -FPTHTDVSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARVVASDGYRVAIR 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 P S ++IVP + EL+R+L G+ R G + KL+DG Sbjct: 178 DFP--ASGDGRNLIVPARSADELIRVLKDGEA--RFTYGEGLLSVTTDRVRMNLKLLDGE 233 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITANNPEQ 299 FPDY RV+PK+ + LK+A R A+L+++ V VSE +L++ A + Sbjct: 234 FPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEGKLRLAAEG-DY 292 Query: 300 EEAEEILDVTYSGAE--MEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 A++ LDV GAE M + FN +VLD L ++ + ++ + S S Sbjct: 293 GRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEG-DAELLFSGSTS 339 >UniRef50_B7CCH7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH7_9FIRM Length = 372 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/374 (22%), Positives = 181/374 (48%), Gaps = 14/374 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F+++R++ L VS + LP L + + + D +++LTG+D + + R +V Sbjct: 1 MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISI--RTVIV 58 Query: 61 -------QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLP 112 E G+ + ++ +I R L + EI V ++ + + S +F+L+ + Sbjct: 59 PGELNNLDIEEEGSIIIDSKYLLEIVRKLDCKNIEIEV-IDYSLVRISSDNGQFNLNGIR 117 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 + ++P++D Q + F L +K ++ T F+ + +D R L G+ F ++G L T Sbjct: 118 SNEYPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNFNSQGNMLYCSGT 177 Query: 173 DGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 D +RLA ++ + S ++ +P K + E++R + D+ + + S + I Sbjct: 178 DSYRLARKTIELDSS-QDFNITIPSKSLTEVVRSV-SDDDTIDIFADSKKAQFVFDKTII 235 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 ++L+DG FPD +R++P + + + R + N+K ++L + + + Sbjct: 236 QTRLIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQETHV 295 Query: 293 TANNPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 + E ++E+L Y G E+ + N +Y+LD + AL CE V + + + +++ + Sbjct: 296 KTYSSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVLIEFSGFMKPIKVSN 355 Query: 352 AASQSAAYVVMPMR 365 S +++P+R Sbjct: 356 PEDASVLMILVPIR 369 >UniRef50_D2R8A9 DNA polymerase III, beta subunit n=3 Tax=Planctomycetaceae RepID=D2R8A9_9PLAN Length = 372 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 170/369 (46%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +R+ L+ Q + R IL N+ L V + ++ TD++M + + V Sbjct: 1 MKIVCQRDKLVSAFQTAAMFAPARSPKAILQNVRLDVTNEGCTMMATDMDMGVRVNLEGV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G +P F I R + A + ++ +VR RS F L + +FP + Sbjct: 61 EVESTGTALLPVLHFGAILRESSD-ATLKIETTSRGTMVRGDRSEFRLQSEDPEEFPIVA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + A +K++I T+F+ + RY L G+L E G++L V TDG RLA Sbjct: 120 LFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVLIELHGDKLIAVGTDGRRLAKM 179 Query: 181 SMPI----GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 P G + ++ I+ + R + DN +++ S+++ F S+L Sbjct: 180 EGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISENDNTVQLAARSSDVLLKTERATFYSRL 239 Query: 237 VDGRFPDYRRVLPKNPDK-HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 V+GRFP +R V P+ D ++ +AA+++++ RG+ ++ L ++A Sbjct: 240 VEGRFPRWRDVFPRRQDAIKIDLTVGPFFSVLRQAAVVTSQDSRGIDFTFADGTLTLSAV 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + ++ + ++Y+G+ + + + +V D L L E ++ +S S + A Sbjct: 300 TSDAGQSRVEMPISYTGSAITVTLDHRFVADFLKVLSPEQTIVLEIESAESAAVFTADDS 359 Query: 356 SAAYVVMPM 364 + YVVMP+ Sbjct: 360 AYGYVVMPL 368 >UniRef50_O83048 DNA polymerase III subunit beta n=4 Tax=Treponema RepID=DPO3B_TREPA Length = 371 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 175/375 (46%), Gaps = 16/375 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK E+E LK + + + I N+LL L++ TD ++ + V Sbjct: 1 MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR--SGRSRFSLSTLPAADFPN 118 G TTV K ++ LP EI + L E++++ + + F L TL FP Sbjct: 60 NVLAEGTTTVFCDKLVNVVSALP-TKEIELTLCEEQLVITPPNKKISFQLRTLSHESFPC 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + V +P + ++ +I T F+++ R+++NG+ + + + V+TDG RLA Sbjct: 119 FPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGVHVDFQYGNIICVSTDGKRLA 178 Query: 179 VCSMPIGQSLPSH--SVIVPRK--GVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 G+S P VIVP K G++ +G + + I S ++ G + F+S Sbjct: 179 YIEKK-GESSPQSFSGVIVPTKILGIVNRKLTPEGS---VTLCITSQHVYFFFGGYKFSS 234 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L++G+FP+Y+RV+P + ++ G L +A R ++L +K + + + + L +++ Sbjct: 235 VLIEGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSS 294 Query: 295 NNPEQE----EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 QE +A+E + Y+G I N Y+ + L + V++ TD ++ + Sbjct: 295 KAHTQENEIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSKEVQVEFTDPAKALTLR 354 Query: 351 DAASQSAAYVVMPMR 365 + +++MPM+ Sbjct: 355 AVPNTDCFHIIMPMQ 369 >UniRef50_B6YRT5 DNA polymerase III beta subunit n=26 Tax=Bacteroidales RepID=B6YRT5_AZOPC Length = 374 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 159/346 (45%), Gaps = 5/346 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + LL LQ V + + +PIL L Q++D L++TG D E + ++ Sbjct: 1 MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 G +P++ D R LP+ + +L+ ++S ++P Sbjct: 61 NAEGEGKFAIPSKNLLDALRELPDQPITFVINETNNEVLIYYENGKYSFIAQNGDEYPTS 120 Query: 120 DDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 Q EV E + + I +T F+ AH ++R +N + F+ + E + VA+DGH+L Sbjct: 121 KPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPERVIFVASDGHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S S I+PRK L +L + + N I + F S+L++ Sbjct: 181 RLKNSRLSGNKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLISRLIE 240 Query: 239 GRFPDYRRVLP-KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G +P+Y V+P ++P + + + L A R + SN ++L + N++ ITA + Sbjct: 241 GHYPNYNAVIPNESPYRIIVDRLNFL-NALKRVTLFSNPGNSLIKLQILANKIFITAQDI 299 Query: 298 EQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD 342 + AEE++ Y G E+ IGF +Y++++LN + + L D Sbjct: 300 DYSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSNEIIFELAD 345 >UniRef50_P27903 DNA polymerase III subunit beta n=29 Tax=Actinomycetales RepID=DPO3B_STRCO Length = 376 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 171/379 (45%), Gaps = 18/379 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MK VER+ L + + + L RP P+L LLL+ +G LSL+ D E+ ARV++ Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVS--ARVSVE 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G V R DI R LP + + +G R V G SRF+L TLP ++P L Sbjct: 59 AEIEEEGTVLVSGRLLADISRALP-NRPVEISTDGVRATVVCGSSRFTLHTLPVEEYPAL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E T+P ++ + D L G+ E EG+ + +TD +R AV Sbjct: 118 PQ-MPEATGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTLASTDRYRFAV 176 Query: 180 CSMPIGQSLPSHSVI--VPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG----DFIFT 233 P S + VP K + + + L GD + GS +G T Sbjct: 177 REFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGRRTT 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 ++L++G P Y+ + P + +A R A+++ E+ VRL + L + Sbjct: 237 TRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVLILE 295 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV------ 347 A + + +A E +D G ++ I FN +++LD L+A+ ++ T S Sbjct: 296 AGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPVAQLSFTTSTKPALLSGRP 355 Query: 348 QIEDAASQSAAYVVMPMRL 366 ++ A ++ Y++MP+RL Sbjct: 356 AVDAEADEAYKYLIMPVRL 374 >UniRef50_A8RAI6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAI6_9FIRM Length = 372 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 174/371 (46%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 M F + + + L S + LP + + + + LTG+D ++ + + Sbjct: 1 MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60 Query: 58 --ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 +++ E G+ + A+ +I R ++G + + F ++ + A + Sbjct: 61 EDCVLEIKEMGSIVIEAKYILEIVRKTDADIIEFEMIDGSLTKISGNSAEFRINGMKAIE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + + F L + +K++I T F+ + ++ R L G+ F EG EL VATD + Sbjct: 121 YPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHCEGNELHCVATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA ++ + + L + +V +P K + E+++ L+ G+N + + + + +GD I ++ Sbjct: 181 RLARKTVELEEEL-NFNVTIPSKSLQEVLKTLE-GENEVEIAVNDKKAQFIIGDTIVQTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG +P+ R++P D L L A RA+ + N+ ++ +SE + +++ Sbjct: 239 LIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAECVLSSK 298 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E + E+L ++ G +EI N YV + + AL V+ L + I Sbjct: 299 SIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAIRALGGSLVKFSLCGEMKPFVITSLED 358 Query: 355 QSAAYVVMPMR 365 +V+P+R Sbjct: 359 DKILQLVLPVR 369 >UniRef50_C3LH37 DNA polymerase III, beta subunit n=48 Tax=Bacillus cereus group RepID=C3LH37_BACAC Length = 376 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 190/380 (50%), Gaps = 21/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL--TGTDLEMEMVARVA 58 M+F V +H + L VS + + +PIL + + ++L + +++ +E A Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 59 LVQPH-----EPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLP 112 + + G VPA+ F +I + +P ++I ++ + E+ + ++SG +L+ P Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNEQTITIQSGEITLNLNGFP 118 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEA---TQFSMAHQDVRYYLNGMLFETEGEELRT 169 A +FPN+ E Q K+LI+A T F++A + R+ L G+ E + +L Sbjct: 119 ANEFPNVPQIDDHTEI---QIETKQLIDAFKQTVFAVAKNESRHVLTGVHIELDHNKLIC 175 Query: 170 VATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 ATD HRLA+ I ++ ++ IVP + EL+++++ + + + ++I G Sbjct: 176 AATDSHRLAIRETLISTNMKAN-CIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGT 234 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRL-YVSE 287 S+L++G++P+ ++P + + Q R+++L++E V L V+E Sbjct: 235 TTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNE 294 Query: 288 NQLKITANNPEQEEAEEI--LDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 + ++I++N + + E +DV ++ I F+ ++LD L A+K E V + + S+ Sbjct: 295 STIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETVTLSFSGSMR 354 Query: 346 SVQIEDAASQSAAYVVMPMR 365 + IE +A +++ P+R Sbjct: 355 PILIEAGTQSAAIHLISPVR 374 >UniRef50_B7K0V0 DNA polymerase III, beta subunit n=13 Tax=Cyanobacteria RepID=B7K0V0_CYAP8 Length = 393 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/394 (25%), Positives = 188/394 (47%), Gaps = 31/394 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD---GTLSLTGTDLEMEMVARV 57 MKF + L L VS + RPT P+LGN+LL VAD G +SLT DL + + Sbjct: 1 MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLL-VADESKGRVSLTAFDLSLGIQTSF 59 Query: 58 ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-------MLVRSGRSRFSLST 110 + + + G +PA+ DI LPEG EI + + + + ++S +F L Sbjct: 60 S-AEVSQGGTVALPAKLLNDIVSRLPEG-EITLIADADESEDDSQIITLKSASGQFQLRA 117 Query: 111 LPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTV 170 + A +FP+L + L + + ++ + F+ + + + L G+ + L Sbjct: 118 MSAEEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGVHLAGTVDSLEFA 177 Query: 171 ATDGHRLAVCSMPI---------GQSLP-----SHSVIVPRKGVIELMRMLDG--GDNPL 214 ATDGHRLAV + P+ G++L SV +P + + EL RML G + + Sbjct: 178 ATDGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTV 237 Query: 215 RVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS 274 + + I +G+ TS+ +DG +P Y +++P+ + + + R A+L+ Sbjct: 238 ALYVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLA 297 Query: 275 NEKFRGVRLYVSENQLKITANNPEQE--EAEEILDVTYSGAEMEIGFNVSYVLDVLNALK 332 ++K V+ + ++ ++ + Q+ +A+E + +G ++ FNV Y++D L AL Sbjct: 298 DQKNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALP 357 Query: 333 CENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 + +++ L + V + Y+VMP+++ Sbjct: 358 SQEIQIQLNEGNQPVILTPLGGLKMTYLVMPVQI 391 >UniRef50_Q3A8P3 DNA polymerase III, beta subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8P3_CARHZ Length = 371 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 177/373 (47%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 MKFT L + + + + P+L +L + + T++LT TDL+M + + Sbjct: 1 MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSV--ETS 58 Query: 59 LVQPHEPGATTVPARKFF-DICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADF 116 G + V A KF DI + LPE + L E + +++ G S S++T +F Sbjct: 59 FPAKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNEGKCVIKYGASEVSVATYRPEEF 118 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P ++ F + I+ F+ + R G+LFE G+ELR VA+D HR Sbjct: 119 PKNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRLVASDTHR 178 Query: 177 LAVCSMPIGQ--SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 LA I + + + +VI+P + + E +R+ G + L ++I + TS Sbjct: 179 LAFRKTFIKREDTGKNINVIIPSRTLHEAVRIF-GTVDELLIKISEGQVEFSGNGIKLTS 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG--VRLYVSENQLKI 292 +L++G+FP+Y++V+P ++ + RAA+L +K + + Y+ + I Sbjct: 238 RLIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENMII 297 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 T+ + E E L ++ G E + FN Y++DVL L+ E + + LT ++ ++ Sbjct: 298 TSQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLETEEIYLSLTGPLNPGVVKPV 356 Query: 353 ASQSAAYVVMPMR 365 ++ +V+P+R Sbjct: 357 NDENYLCLVLPVR 369 >UniRef50_UPI0001C36FC0 DNA polymerase III subunit beta n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FC0 Length = 367 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 176/370 (47%), Gaps = 9/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L + + VS + + T+P L + ++V+ GT+ LTG +LEM + ++ Sbjct: 1 MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTISAS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR--SGRSRFSLSTLPAADFPN 118 E G V AR F + R + G E+ ++ E M++ + S + A++FP Sbjct: 61 TEGE-GEFVVSARLFSEFTRRMS-GDEVTFDID-ESMVINISCSATECSFPAMSASEFPE 117 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L F++ Q+T+K +I T ++ + + + L G LF+ E VA DG RLA Sbjct: 118 LPMVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDIENGSFNMVAIDGFRLA 177 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + +VP+K ++E+ ++ D D P + +I +G S+L+ Sbjct: 178 I-RGEMTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVISRLL 236 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITANN 296 +G F +Y+ +P + + + R ++L ++K + +R V +KI+ Sbjct: 237 EGAFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKISCRT 296 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + + + SG + IGFN +L+ L A + + VR+ ++ ++I +S Sbjct: 297 G-IGKINDAISADISGETVTIGFNNKLILEALRAAEGDKVRIRFNGAMKVIEILPLEGES 355 Query: 357 AAYVVMPMRL 366 ++VMP++L Sbjct: 356 FIFLVMPIQL 365 >UniRef50_D1BQ78 DNA polymerase III, beta subunit n=3 Tax=Veillonella RepID=D1BQ78_VEIPT Length = 370 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 10/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T + +L K + + + + + G + + +G + L G D E+ + R+ + Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGI--RLTID 58 Query: 61 -QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 EPG V +R F ++ R LP + E+ +G + + SG S F+L TL DF Sbjct: 59 GDIKEPGTLVVGSRYFQELIRKLPGDTIELYKPEDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 ++ + + MK LI+ T ++ A + R G L E E+ VATD HR+A Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTMVATDTHRMA 178 Query: 179 VCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFTSK 235 V + I + + I+P K + E+ R+L DNP + I N I + S+ Sbjct: 179 VKKITIDEPATTPMRAIIPTKTLAEVSRLL-PTDNPAMINIIWNRTQIVFNFESIYIISR 237 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITA 294 L++G +P+Y +V+P D A R ++L+ + + +R SE+ + ++ Sbjct: 238 LIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLST 297 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N E A+E + V + G I FN Y+ D+L +N+ + L + V I + Sbjct: 298 QNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIHLFLKQN-GPVVIRQDNN 356 Query: 355 QSAAYVVMPMR 365 + YVV P+R Sbjct: 357 PNYTYVVTPVR 367 >UniRef50_A4T4T7 DNA polymerase III, beta subunit n=20 Tax=Corynebacterineae RepID=A4T4T7_MYCGI Length = 398 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 114/398 (28%), Positives = 177/398 (44%), Gaps = 45/398 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 +KF + RE + V+ L RPT+P+L +LL +D L+++G D E+ ++ Sbjct: 12 LKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIP-A 70 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + PG+ V R DI R LP + V +EG R+ + G +RFSL T+ D+P L Sbjct: 71 EIASPGSVLVSGRLLSDIVRSLP-AKPVDVSVEGTRVSLTCGSARFSLPTMAVEDYPTLP 129 Query: 121 DWQSEVEFTLPQAT-------MKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 TLP T I + D L G+ E GE++ ATD Sbjct: 130 --------TLPDETGVVSADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAATD 181 Query: 174 GHRLAV--CSMPIGQSLPSHSVIVPRKGVIELMRM-LDG-------GDNPLRVQIGSNNI 223 RLAV + G + +V+VP K + E + DG G P + G I Sbjct: 182 RFRLAVRELTWSAGAAGVEAAVLVPAKTLAEAAKAGTDGTEVHLALGQGPTVGKEGLLGI 241 Query: 224 RAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 R+ T++L+D FP +R++LP G L +A R A++++ + VR+ Sbjct: 242 RSK--GKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVADRGAQ-VRM 298 Query: 284 YVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT-- 341 +++ L+++A + AEE L V +SG + I FN SY+ D L +L E V T Sbjct: 299 EFADDVLRLSAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHAERVTFGFTTP 358 Query: 342 -------------DSVSSVQIEDAASQSAAYVVMPMRL 366 S + AA Y++MP+RL Sbjct: 359 SRPAVLRPAGDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396 >UniRef50_C7N0K1 DNA polymerase III, beta subunit n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0K1_SLAHD Length = 365 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 171/376 (45%), Gaps = 22/376 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ + L L V+ R TLP+L + + +L L TDL+ + VA + Sbjct: 1 MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G +P + DI + LP+ A I V ++ V ++ F+L TL DFP+ Sbjct: 61 VEDE-GMCVIPQKLLSDIVKNLPDAA-ITVDVDDSEATVSCDKTSFTLHTLIPDDFPSFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + T+P ++ + + R L G+L T E + VATD +RLAVC Sbjct: 119 EVNIDNQITVPFKQFSSAVKKVAKAASKDQSRAVLTGVLLRTTPEGMSIVATDSYRLAVC 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ + +V V+E+ + + + + + + +N + GD + ++ ++G+ Sbjct: 179 NLKFDSAGEEFEALVTSSFVLEVASLPEVQET-IDICLSANQVMFRFGDTVMVNRRIEGK 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG--------VRLYVSE--NQL 290 +P Y +++ AG K + +A+++ K G ++ ++E Sbjct: 238 YPAYEKLI---------AGSYTTKTCYTTSALITAVKRVGLMSSAASPIKFDINEATKNT 288 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 ++ N+ E A E++ +G +EI N Y++D L+++ ++V S+ Sbjct: 289 VLSTNSQEIGTASEVVSCEVNGENVEIALNHQYIIDGLSSISTDHVFFETQGSMKPGVFR 348 Query: 351 DAASQSAAYVVMPMRL 366 + Y++MP+RL Sbjct: 349 SGEGEDFLYLLMPVRL 364 >UniRef50_C0EA16 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA16_9CLOT Length = 340 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 171/341 (50%), Gaps = 15/341 (4%) Query: 33 LLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL 92 +LL+ + L LTG DL++ + + V+ EPGA + AR F DI R +P+ +I + Sbjct: 4 ILLECENNNLKLTGYDLDLG-ITKTIQVETVEPGAIVLNARLFSDILRKMPD-EQITITS 61 Query: 93 EGERMLVR-----SGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMA 147 + +++L R + + +S D P +DD Q FT P +K +I T F+++ Sbjct: 62 D-QKLLTRIEGIDTEFNILGMSRDEYPDMPAVDDSQG---FTAPDYLLKNMINQTLFAIS 117 Query: 148 HQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRML 207 D L G LF+ ++ V+ DG+R+A+ I S S +VP K + E+ ++L Sbjct: 118 VNDQTPVLTGSLFDLNSGKMSVVSVDGYRVALRKENIA-SDTDVSFVVPGKTLAEITKLL 176 Query: 208 DGGDNPL-RVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQA 266 + + RV +GS +I + + S+L++G + DY+ +P+ + A + Q+ Sbjct: 177 SDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVVQS 236 Query: 267 FARAAILSNEKFRG-VRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVL 325 R +I+ N++ + V+L + + +T + + ++ + T G + I FN Y++ Sbjct: 237 IERTSIIINDRNKSPVKLVTEGSTINLTCESTIGKVSDR-FEATVEGDPIRIAFNNKYMI 295 Query: 326 DVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 D L +C+ + + + +S ++I ++V+P+RL Sbjct: 296 DALKHTECDQIYIDINGPLSPIKIIPTEGDDFLFLVLPVRL 336 >UniRef50_A5CBW4 Chromosomal replication initiation protein n=6 Tax=Orientia tsutsugamushi RepID=A5CBW4_ORITB Length = 432 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 189/380 (49%), Gaps = 45/380 (11%) Query: 29 ILGNLLLQVADGT----LSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPE 84 IL N+ L + T L ++ TD ++ + ++ + + T+P + +I + +P Sbjct: 46 ILSNVKLTHINDTVEKRLEISATDGDIFIYQKLPIKISKNDISITLPLQALNEIVKKIPH 105 Query: 85 GA-EIAVQLEGERMLVRSGRS-RFSLSTLPAADFPNLDDWQSEVEFTLPQATMK--RLIE 140 I + + + ++ G F+L+TLP FP +++ ++V+F + M+ ++IE Sbjct: 106 DEFTIYCNQDNKMVQIKGGEYLEFNLATLPINLFPVIEEL-TDVDFIIHVTAMQLAQMIE 164 Query: 141 ATQFSMAHQDVRYYLNGM-LFETEGEELRTVATDGHRLAV--CSMPIGQSLPSHS----V 193 T+F+++ ++ RY LNG+ L + + L VATDGHRLA C++ ++ S++ V Sbjct: 165 YTKFAISTEETRYNLNGIYLHSKDYKSLIAVATDGHRLASAKCNIDTFKTNISNNDGFGV 224 Query: 194 IVPRKGVIELMRMLDG---GDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK 250 I+PRK + EL ++ + +++ SN I+ + SKL+DG FP+Y +P Sbjct: 225 ILPRKTITELYKIFKEPSINQYNVIIKVKSNKIQFDCQNITIISKLIDGNFPEYELFIPA 284 Query: 251 NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA---------------- 294 N K + + L ++ R + ++ EK + V L + + + I A Sbjct: 285 NNTKKIILNSNDLSESIDRVSTIAVEKSKIVILDLDHHAITIRAHGNAQCKAKELLLRHQ 344 Query: 295 ----NNPEQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVR--MMLTDSVSSV 347 N+ Q +E+ Y G ++ I FN Y+LDVL+ C N++ + DS+S Sbjct: 345 HNNKNDQHQSSKQEVEKYEYIGDDQLTIAFNAKYLLDVLSV--CNNIKIPIEFKDSISPA 402 Query: 348 QIE-DAASQSAAYVVMPMRL 366 I+ + + SA +++MP+ + Sbjct: 403 LIQFEEKNTSATFIIMPVSV 422 >UniRef50_A9KPP2 DNA polymerase III, beta subunit n=36 Tax=Bacteria RepID=A9KPP2_CLOPH Length = 370 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 185/369 (50%), Gaps = 11/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEM--EMVARVA 58 MK ++ LL + + + T+PIL ++++V + T+ L D+E+ E + + + Sbjct: 1 MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIETIVKGS 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADFP 117 ++ G+ + A+ F +I R LP+ E+ V+ + + M + +++F+++ A +FP Sbjct: 61 IISN---GSVAINAKVFSEIIRKLPDN-EVNVETDEKFMTTITCEKAKFTIAGKSAEEFP 116 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + + L Q T+K +I T FS++ + + G LFE G ELR V+ DGHR+ Sbjct: 117 MLPTIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRVVSLDGHRI 176 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKL 236 ++ + + S ++VP K + E+ ++L G + + + ++ D + S+L Sbjct: 177 SIRKVELKNSYAPKKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFDDTLVLSRL 236 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITAN 295 ++G + ++L + + ++ RA +L E + + + + + + +L++ N Sbjct: 237 IEGEYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIEDKKLELKIN 296 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 E+I D+ G ++ IGFN +++D L + E V + L + + I+D + Sbjct: 297 TSIGTMDEDI-DIEKEGKDILIGFNPKFLIDALRVIDDEEVEIYLINPKAPCFIKD-KEE 354 Query: 356 SAAYVVMPM 364 S Y+++P+ Sbjct: 355 SYIYLILPV 363 >UniRef50_B3QWU6 DNA polymerase III, beta subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QWU6_CHLT3 Length = 377 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 102/380 (26%), Positives = 179/380 (47%), Gaps = 19/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+ +HL + + L + T ++ L++ LSL TD ++ + + V Sbjct: 1 MKFSSSIKHLSEAVNNTVLALPAKATDARYESINLKLEQNKLSLFATDGDISLTLQTN-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEG-AEIAV----QLEGERMLVRSGRSRFSLSTLPAAD 115 + + GA ++ A+KF D+ R + + AE +V E L+++ R + +S + Sbjct: 60 ESSDSGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFE 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 + Q ++ F + + + LI+ T F+ + +R + G+LFE E E +R V+TDGH Sbjct: 120 EESAGSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIRAVSTDGH 179 Query: 176 RLAVCSMPIGQSLPSH-SVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVGDFIF 232 RL + +IVP + V+ ++R L + GD + + S IR +G+ I Sbjct: 180 RLVKITRNHNTGAEGKLKIIVPSR-VLGIVRKLFSEDGDVEISIDANSQRIRFRMGETIL 238 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLK 291 LV +P+Y V+P DK + L + R S+ RG VR +V EN L Sbjct: 239 LCSLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSS---RGDVRFHVQENSLA 295 Query: 292 ITANNPEQ-EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI- 349 ++A N ++ A+E + Y + IGFN ++ D L L E V + + I Sbjct: 296 VSAENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNAEEVIFQFSSPTRAAIIL 355 Query: 350 ---EDAASQSAAYVVMPMRL 366 E+ A++ +VMP+R+ Sbjct: 356 PKQEEDANEDVLMLVMPVRI 375 >UniRef50_Q04HR5 DNA polymerase III, beta subunit n=2 Tax=Oenococcus oeni RepID=Q04HR5_OENOB Length = 374 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/375 (24%), Positives = 181/375 (48%), Gaps = 13/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V+R L L VS + G+ +PIL + + V++ ++L G++ E+ + + Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 QP------HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 + EPG A F +I + L ++ + EG ++ + G S F+++ A Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSD-KVEISTEGSQIAIVGGSSDFTVAGQSAD 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 ++P L +P + + +I T +++ QD R L G+ F +++ V+TD Sbjct: 120 NYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIKAVSTDS 179 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HRL+ IG V+VP K +IEL +L+ DN L +Q + + +G+ F S Sbjct: 180 HRLSQRITKIGND-SQADVVVPSKALIELRALLENIDN-LNLQFDRSQLLVDLGETTFYS 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGV-RLYVSENQLKIT 293 +L++G++P R++P + L + RA++++++ V +S+++L ++ Sbjct: 238 RLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQDKLVLS 297 Query: 294 ANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI--E 350 E + E L + + G +++I FN +V D L+++ + T ++ I Sbjct: 298 TAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSIGESKLDFSFTTNLRPFVIRPN 357 Query: 351 DAASQSAAYVVMPMR 365 A+ + ++ P+R Sbjct: 358 GASDNNKVQLITPVR 372 >UniRef50_C7LJX6 DNA polymerase III, beta subunit n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LJX6_SULMS Length = 371 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/375 (22%), Positives = 178/375 (47%), Gaps = 17/375 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF LL+ L+ + + LPIL N L ++ + L++T +DLE+ M + Sbjct: 1 MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLN- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +P + +I + +PE + + ++ + S + LS + ++P Sbjct: 60 INSINFGSAVIPHKILLEILKKIPEQPLTFCKEKENKLKILSQNGEYDLSIFSSEEYPKY 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ F + + + +I T F++ + ++R LNG+ F+ E V+T+ + L Sbjct: 120 SLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDIENNISNFVSTNSNFLVK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK---- 235 S+ +I+P+K + L L+ +N V I N++ F F K Sbjct: 180 YSIKDLSFNKEIRLIIPKKPLNILKYNLNDTNN--NVYISYNDLNT---SFFFKKKKIIC 234 Query: 236 -LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L++G +P+Y+ ++ K +K L + A R + SN + L S+ + +I++ Sbjct: 235 SLINGNYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISS 294 Query: 295 NNPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI---- 349 + ++A E L Y G +EI FN Y++++L+ + CE+++ + ++ SS +I Sbjct: 295 FDINYNKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINCEDIKFEMLNNNSSCRITPLM 354 Query: 350 EDAASQSAAYVVMPM 364 +++ + ++MP+ Sbjct: 355 KNSKKEEILILIMPL 369 >UniRef50_C0GI72 DNA polymerase III, beta subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI72_9FIRM Length = 367 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 176/372 (47%), Gaps = 11/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV + L + LQ + + T+P+L +L Q T++LT T+LE+ + R + Sbjct: 1 MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGI--RTSFP 58 Query: 61 QP-HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML--VRSGRSRFSLSTLPAADFP 117 P E G +PA K +I R LP G +++ + E L ++SG+S F L L ++P Sbjct: 59 VPDQEKGEVVLPA-KAVEIIRKLP-GDTVSLTVNEENFLTEIKSGQSEFQLYGLSTEEYP 116 Query: 118 NLDDWQS---EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D + + + +R + T F+ + + + G++F + L ++D Sbjct: 117 AFADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLSSSDT 176 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLA S + +VP K + E++R+L ++ +++ + N + + +S Sbjct: 177 FRLATTSCRVQNQGADGVFLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIKLSS 236 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+D FP+ RV+P+ A RA++LS VRL + E L I A Sbjct: 237 RLLDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLVIRA 296 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 ++ + E + V SG +EI N ++LD+L + + + LT++ + D+ Sbjct: 297 SSKFGKTQEHV-PVELSGEGLEISLNSRFILDMLKVHEGDQCILELTNANKPCILRDSLY 355 Query: 355 QSAAYVVMPMRL 366 Q Y+V+P+++ Sbjct: 356 QEYLYLVLPIKI 367 >UniRef50_Q0RUQ2 DNA polymerase III, beta chain n=25 Tax=root RepID=Q0RUQ2_FRAAA Length = 413 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 104/394 (26%), Positives = 176/394 (44%), Gaps = 32/394 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPT--LPILGNLLLQVADGTLSLTGTDLEMEMVARVA 58 MKF VER+ + + + L RPT L +L LLL L + D E+ V Sbjct: 22 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G V + +I R LP A + + ++G R+++ G +RF+L LP D+P Sbjct: 82 ATVSEE-GRALVNGKLLAEITRALP-AAPVDLGIDGTRLVITCGNARFALPMLPVDDYPA 139 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L V + + + + D L G+ E EG+ L ATD +RLA Sbjct: 140 LP-AMPPVTGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAATDRYRLA 198 Query: 179 VCSMPI---------GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 V S+ + P +VP + +++ + L G + + +G+ + Sbjct: 199 VRSLKWRPDDSAGEGDAAAPVTVALVPARTLLDTAKSLSGSGVEVSIALGTGPSGETLAG 258 Query: 230 FI-----FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 F T++L++G+FP +R++LP + + L++A R A+++ K V+L Sbjct: 259 FAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVA-AKTAPVQLS 317 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS- 343 S + L + A + +A E L VTY G E+ + FN SY+LD L AL+ + VR+ + Sbjct: 318 FSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVRIGFASAE 377 Query: 344 -----------VSSVQIEDAASQSAAYVVMPMRL 366 ++ +D Y++MP+RL Sbjct: 378 DPAVAANKPAILTGKADDDGEVPDYRYLLMPIRL 411 >UniRef50_Q47TU0 DNA polymerase III beta subunit family protein n=2 Tax=Streptosporangineae RepID=Q47TU0_THEFY Length = 379 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 105/386 (27%), Positives = 172/386 (44%), Gaps = 28/386 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD---GTLSLTGTDLEMEMVARV 57 MKF V+R+ + + L RP +P+L + L+VAD TL L+G D E+ A V Sbjct: 1 MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQASV 60 Query: 58 ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 V E G+ VP R +I R LP + +EG R L+ G +RF+L TLP D+P Sbjct: 61 D-VHAEEAGSVLVPGRLLAEIVRTLPPH-PVEFHVEGSRALLTCGNARFTLLTLPLEDYP 118 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + + P + S + D L G+ G+ + ATD +R+ Sbjct: 119 TLPAMPRTIG-SAPADVFATAVRQVLPSTSRDDTLPMLTGVHLTFRGDTILLAATDRYRI 177 Query: 178 AVCSM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRA--------- 225 AV M P + + S +VP + + + R L GG+ + + + +++ R Sbjct: 178 AVREMWWKPEEVDIDT-SALVPARTLGDFSRSLTGGN--VDIALSTSDSRGAGEGMIGFE 234 Query: 226 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 H G T++L+D F Y P + L +A R A++++ + VRL Sbjct: 235 HDGKRT-TTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVAD-RSTPVRLSF 292 Query: 286 SENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 + +++ + A + + +A E L+V + G M I FN Y LD L ++ E + Sbjct: 293 TSSEVVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVETERAFLRFVAPTR 352 Query: 346 SVQIEDAASQSAA-----YVVMPMRL 366 I ++ Y+VMP+RL Sbjct: 353 PAVITGTPAKEGGKPDFRYLVMPLRL 378 >UniRef50_B4VWR6 DNA polymerase III, beta subunit n=5 Tax=Cyanobacteria RepID=B4VWR6_9CYAN Length = 400 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 177/400 (44%), Gaps = 36/400 (9%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT---LSLTGTDLEMEMVARV 57 MK T + L L V+ + RPT P+LGN+LL+ AD +SLT DL + + Sbjct: 1 MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLK-ADAENQRVSLTAFDLSLGLQTSF 59 Query: 58 ALVQPHEPGATTVPARKFFDICRGLPEG----------AEIAVQLEGERMLVRSGRSRFS 107 GA +PA+ F DI LPEG AE E + + S ++ Sbjct: 60 N-ANVEADGAIAIPAKLFNDIVSRLPEGDITLEDSLSEAESDADTESLSITLTSTSGQYK 118 Query: 108 LSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEEL 167 + + + DFP L + + LP + + + F+ + + + L G+ + + L Sbjct: 119 MRGMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSL 178 Query: 168 RTVATDGHRLAVC----SMPIGQ-------------SLPSHSVIVPRKGVIELMRML--D 208 ATDGHRLAV + P + ++ S + VP + + EL RML Sbjct: 179 EFAATDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGLS 238 Query: 209 GGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFA 268 + + +Q I G+ TS+ ++G++P YR+++P + + L A Sbjct: 239 ESSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAVE 298 Query: 269 RAAILSNEKFRGVRLYVSEN--QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLD 326 R A+L+++K V+ + + +T + A E L +G +EI FNV Y++D Sbjct: 299 RIAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLID 358 Query: 327 VLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L AL +++ + + + V + Y++MP+++ Sbjct: 359 GLKALSTSDIQFQMNAANTPVILTPLGGLKMTYLIMPVQI 398 >UniRef50_B8F8V2 DNA polymerase III, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F8V2_DESAA Length = 370 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 169/382 (44%), Gaps = 30/382 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ T+ ++ LL+ + P LG + ++ +L++ TDL+ + + L Sbjct: 1 MQLTIPKQALLRAVLAAEHVAAKDKNFPALGGIRMEAGHQSLTIQATDLDTGYASVLTLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG-------RSRFSLSTLPA 113 EPGA PA++ + PE E R+ V +G R+R SL+ + Sbjct: 61 DIQEPGAALPPAQQLKAVIMDWPE--------EDARLSVENGFPTITGERTRTSLAGMDP 112 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFS--MAHQDVRYYLNGMLFETEGEELRTVA 171 DFP + + F +P T++ L+ T S + + R ++ G +GE L Sbjct: 113 EDFPEIPEPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGAHLARDGEHLVITT 172 Query: 172 TDGHRLAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 TDG +LA S PI + LP +I+ + G +LM + + + S+++ A + Sbjct: 173 TDGCQLARGSFPIQDARLPEKGIILHKTGAAKLMEFAKNAPGDVALGVTSSHLSAESQNE 232 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLK----QAFARAAILSNEKFRGVRLYVS 286 S+LV G +PD R++P L+ G + + A R IL++EK++ L + Sbjct: 233 RLISRLVQGDYPDTARIIPV-----LDTGFAINRFEFLAALKRVGILTSEKYQAASLALE 287 Query: 287 ENQLKITANNPEQEEAEEILD---VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS 343 +++ +T +NPE + E LD + G +N + L + ENV + D+ Sbjct: 288 HSRITVTVDNPELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTSENVEVKARDA 347 Query: 344 VSSVQIEDAASQSAAYVVMPMR 365 S + + +VMPM+ Sbjct: 348 ASPLVLSGEKDPGYLALVMPMK 369 >UniRef50_C8P210 DNA polymerase III, beta subunit n=2 Tax=Erysipelotrichaceae RepID=C8P210_ERYRH Length = 372 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/371 (21%), Positives = 172/371 (46%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MKF ++++ K L V LPIL + ++ D L+L +D + + + Sbjct: 1 MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60 Query: 60 ----VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + +E G + +R + R L ++G + ++ ++++ A Sbjct: 61 DENKLNVYEEGEVVLESRYILEAVRKLDSDFIDFEIIDGALTRISGNKAEYNINGSKAEL 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + EF +P + +I+ T F + + R G+ F+ +G + VATD + Sbjct: 121 YPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNFKADGNTMNCVATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA S+ + + ++ +P + E+ + + + + + + ++ +V + S+ Sbjct: 181 RLAKKSIDLPTPM-DFNICIPAVNLYEVSKTI-SDNKDVHIAVSDKLVQFYVDSTLIQSR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG FPD R++P L + A R++ L ++ + V+L S + I++ Sbjct: 239 LIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEGVLISSK 298 Query: 296 NPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E +EEIL + Y G ++I F+ Y+++ L + K + V+++ + + +++ Sbjct: 299 SQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKTDTVKILFVGEMQAFILKNPED 358 Query: 355 QSAAYVVMPMR 365 S +V+P+R Sbjct: 359 DSIVQLVLPVR 369 >UniRef50_O54376 DNA polymerase III subunit beta n=76 Tax=Streptococcaceae RepID=DPO3B_LACLM Length = 380 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 178/377 (47%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVA----- 55 +KF++ + L+ +G + T+P L L ++V + ++L G++ ++ + Sbjct: 2 IKFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPAD 61 Query: 56 -RVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 + A + G+ + A F ++ LPE ++ E +++L+ SG+S +L L + Sbjct: 62 NKDASMLISGTGSVLLEAAFFENVVSQLPEVTLEFIEKEQKQVLLTSGKSEITLKGLDSE 121 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATD 173 +P+L + + +K + T F+++ Q+ R G+ ET EL+ VATD Sbjct: 122 IYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELKAVATD 181 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HR++ +P+ + VI+P K + + + + + I + + + Sbjct: 182 SHRMSQRLLPLEDTDLKFDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNETISYY 241 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDL--LKQAFARAAILSNEKFRG-VRLYVSENQL 290 S+L++G +PD R++P D L+ D L+ RA +L+ G V+L VS + + Sbjct: 242 SRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSV 301 Query: 291 KITANNPEQEEA-EEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 TAN+PE EE+ ++ G ++ I FN Y++D L +K VR+ +V + Sbjct: 302 VTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEVRIRFISNVRPFTL 361 Query: 350 EDAASQSA-AYVVMPMR 365 + +S ++ P+R Sbjct: 362 QPRNEESGFVQLITPVR 378 >UniRef50_A9B4J2 DNA polymerase III, beta subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4J2_HERA2 Length = 381 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 173/381 (45%), Gaps = 16/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +E+L + L + GR +LP+L N+LL G L L G +LE+ + A V Sbjct: 1 MRLACLQENLKRGLALAGHAVAGRSSLPVLANILLATESGRLKLAGNNLEIGITALVG-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E GA T+PA+ D+ LP + E+ V + + V ++ ++ + A +FP + Sbjct: 60 KVDEDGAITIPAKLLSDLVGNLPNDTVELEVDPRTQTLTVTCRGTKANIKGIDADEFPAM 119 Query: 120 DDWQSE-VEFTLPQATMKRLIEATQFSMAHQDV--RYYLNGMLFETEGEELRTVATDGHR 176 +E V LP +++++ + + A ++ L G+L G + A DG+R Sbjct: 120 AVPGNEPVLAYLPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATFAAIDGYR 179 Query: 177 LAVCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNN--IRAHVGDFIFT 233 LAV ++ + + + +++P + + EL R L + P+ + I SN + H F Sbjct: 180 LAVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTVDFV 239 Query: 234 SKLVDGRFPDYRRVLP--KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE---- 287 S+++DG+FPDY R +P N +A R A+ S V L + Sbjct: 240 SRVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERGDGS 299 Query: 288 --NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 +L + AN E E+ E + G + ++ NV Y+ + L A+ + V + S Sbjct: 300 EPGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDTDQVALETQTPNS 359 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 ++VMPMR+ Sbjct: 360 PGVFRPIGGDEYLHLVMPMRI 380 >UniRef50_C7QFL8 DNA polymerase III, beta subunit n=3 Tax=Actinomycetales RepID=C7QFL8_CATAD Length = 396 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 97/401 (24%), Positives = 176/401 (43%), Gaps = 46/401 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG-------TLSLTGTDLEMEM 53 MKF VER+ L + + + L RP P+L L+ + +G +++L+G D E+ Sbjct: 1 MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60 Query: 54 VARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 A++ EPG + + DI + LP + EG ++L+ G SRF+L TLP Sbjct: 61 RAQIG-ADVTEPGRILIHGKLLADIAKSLPN-RPVEFSTEGSKVLLSCGSSRFTLQTLPV 118 Query: 114 ADFPNLDDWQSEVEFTLPQAT-------MKRLIEATQFSMAHQDVRYYLNGMLFETEGEE 166 D+P L T+P AT + + + D L G+ E EGE+ Sbjct: 119 EDYPALP--------TMPTATGAVTASGLAGAVSQVAIAAGRDDTIPMLTGIRVEIEGEK 170 Query: 167 LRTVATDGHRLAVCSMPIG--QSLPSHSVIVPRKGVIELMRMLDGGD------------- 211 + VATD RLAV + Q S + ++P K + + + L GGD Sbjct: 171 ITLVATDRFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGDWVSLALSGGDAGE 230 Query: 212 NPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAA 271 + + G G TS+L+ G F YR + P + +A R + Sbjct: 231 GLIGFESGEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVS 290 Query: 272 ILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL 331 ++++ + ++L ++ ++ + A ++ +A E +D G ++ + FN S++LD L + Sbjct: 291 LVAD-RTSPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVI 349 Query: 332 KCENVRMMLTDSVSSV------QIEDAASQSAAYVVMPMRL 366 + ++ T + ++ A + Y++MP+R+ Sbjct: 350 DTQYAQLSFTVASKPAVLMGRPALDAPAQEEFRYLMMPLRV 390 >UniRef50_B7H828 DNA polymerase III, beta subunit n=20 Tax=Bacteria RepID=B7H828_BACC4 Length = 376 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/382 (21%), Positives = 186/382 (48%), Gaps = 25/382 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTD------------ 48 M+F V + + L +V+ + + +PIL + + ++L ++ Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 49 LEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFS 107 +E E +A + + G VPA+ F +I + +P ++IA++ + E+++ ++S S Sbjct: 61 IEDEKIATIL-----KAGTIVVPAKYFIEIIKKMP--SDIAIKSKNEQLITIQSEEIILS 113 Query: 108 LSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEEL 167 L+ PA +FPN+ + E + + + + T F++A + R L G+ E +L Sbjct: 114 LNGFPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNNKL 173 Query: 168 RTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 ATD HRLA+ + + ++ IVP + EL+++++ + + + ++I + Sbjct: 174 ICAATDSHRLAIRETLLSSDVKAN-CIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRL-YV 285 G S+L++G++P+ ++P + + + Q R+++L++E V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLASEWANNNVNLEII 292 Query: 286 SENQLKITANNPEQEEAEEI--LDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS 343 +E+ +KI++N + + E +D ++ I F+ +++D L A+K E + + S Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEEKITLSFGGS 352 Query: 344 VSSVQIEDAASQSAAYVVMPMR 365 + + IE +A +++ P+R Sbjct: 353 MRPILIEAGEQSAAVHLISPVR 374 >UniRef50_B1I1H5 DNA polymerase III, beta subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1H5_DESAP Length = 389 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 167/364 (45%), Gaps = 29/364 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-----LSLTGTDLEMEMVA 55 M+F RE LL + V + + + L +L + G +SLTG+++++ + Sbjct: 1 MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAGEAGQQGVSLTGSNMDL-TIR 59 Query: 56 RVALVQPHEPGATTVPARKFFDICRGLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 R+ GA +PAR+ +I R LP+ I + + + GR+R L+ AA Sbjct: 60 RIIPAGVTVSGAVVLPARQLAEIVRRLPDVPVSITADHQKNSVELTYGRARALLNGYSAA 119 Query: 115 DFPNLDDWQSEV-------------EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE 161 +FP D + V + T P L ++ D+R G+L E Sbjct: 120 EFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFTGVLLE 179 Query: 162 TEGEELRTVATDGHRLAVCSMPIGQSLPSH---SVIVPRKGVIELMRMLDGGDNP-LRVQ 217 + E+R VATD HRLA+ + + P + VIV + + EL+R+L + V Sbjct: 180 IDEGEIRAVATDTHRLAMHRVDY-EGEPENRKMQVIVSGRALGELVRVLSQAEEEQFEVT 238 Query: 218 IGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEA-GCDLLKQAFARAAILSNE 276 I N I VG S+L+ G +PDYR+V+PK + LL Q RAA L+ + Sbjct: 239 IAENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVERAATLAQD 298 Query: 277 KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 + L++ + L +TA + EEI V +G E+EI FN Y+ + L CE+ Sbjct: 299 GSPVINLHLGQGLLGVTAQSEAGSIHEEI-PVELAGQELEISFNAKYLEEALR--WCEST 355 Query: 337 RMML 340 +++L Sbjct: 356 QLIL 359 >UniRef50_Q2JU25 DNA polymerase III, beta subunit n=2 Tax=Synechococcus RepID=Q2JU25_SYNJA Length = 454 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/405 (25%), Positives = 186/405 (45%), Gaps = 45/405 (11%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVALV 60 FT E+ L L VS + RP LP+L N+L++ + ++LT DL + + + Sbjct: 51 FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFE-A 109 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + G TT+PA+ DI LP G Q+ E + + S ++ L +PA ++P L Sbjct: 110 EVKGSGRTTLPAKLLSDIVSRLPSGPIGLSQVPESAAVTLTSAAGQYQLRGMPAEEYPTL 169 Query: 120 D-------DWQSEVE------FTLPQATMKRLIEATQFSMAHQDVRYYLNGM---LFETE 163 D +E E LP ++ + I T F+ + D + L G+ L + Sbjct: 170 PEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTGD 229 Query: 164 GEELRTVATDGHRLAVC-----SMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRV 216 L ATDGHRLA+ +P+ + + +P + + E+ R+L V Sbjct: 230 PPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKLDFTIPARTLREVERILGAQTAASAV 289 Query: 217 QIGSNNIRAHVGDFIF-------------TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLL 263 ++ + R+ V FI TS+L++G++PDY R++P+ ++H+ L Sbjct: 290 ELRFD--RSQV-QFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPL 346 Query: 264 KQAFARAAILSNEKFRGVRLYVSE--NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNV 321 ++ R + + ++ ++ +SE L+I+ P+ EE L V SG ++E+ FNV Sbjct: 347 IESLERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNV 406 Query: 322 SYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 Y+L+ L + V + L + + + Y+VMP++L Sbjct: 407 RYLLEALKVFHTQQVSLELNGATQPAIWKPIGATRLCYLVMPVQL 451 >UniRef50_C4DK83 DNA polymerase III, beta subunit n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DK83_9ACTO Length = 380 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 161/343 (46%), Gaps = 16/343 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MK V+R+ L + + L RP++P+L L+ V+DG L+++G D E+ ++V L Sbjct: 1 MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVS--SQVTLP 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 V G+ V + +I + LP + V EG + + G +RF+L T+P D+P+L Sbjct: 59 VTSDASGSALVSGKLLAEIVKALP-AKPVDVAAEGSHVEITCGSARFTLPTMPVEDYPSL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D E T+ A + T + D + G+ E G L +ATD +R+A+ Sbjct: 118 PD-MPEAVGTIDAAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLALLATDRYRMAI 176 Query: 180 CSMPIGQSLPSHSV--IVPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFI---- 231 +P +V ++P K + + + L GG+ + + SN VG F Sbjct: 177 RDLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVG-FAADGR 235 Query: 232 -FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 TS+++DG+ P R ++P L L + AR L E+ +RL V + L Sbjct: 236 RTTSRVLDGQLPPLRSLIPVTYAAELRVNAAEL-ASVARRVSLVTERNSPLRLNVDGDGL 294 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC 333 + A E A E +D YSG M++ FN Y+LD L+A+ Sbjct: 295 VVEAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISA 337 >UniRef50_Q8L2C9 DNA polymerase III beta chain n=2 Tax=Enterobacteriaceae RepID=Q8L2C9_PROVU Length = 422 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 44/384 (11%) Query: 23 GRPTLPILGNLLLQVADGTLSLTGTDLEM-EMVARVALVQPHEPGATTVPARKFFDICRG 81 G +L L L + LS G D ++++R + + + +VPA + R Sbjct: 43 GNVQFKVLEMLTLTLVGDNLSALGVDYNTGQVISRGVVHKANGDMVASVPATHISTLFRN 102 Query: 82 LP--EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD--DWQSEVEFTLPQATMKR 137 + E + E R+++R+G++ +++ A P +D D ++ T P + R Sbjct: 103 MKGEETVNVRCDQERNRLIIRTGKNAYNIPLCMDA-IPVVDESDLTAKYSITFPANMLHR 161 Query: 138 LIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS---------------- 181 ++ S DVR+Y+NG+ + VATDGHR++V + Sbjct: 162 TLQRVMHSAGKNDVRHYMNGVFLSLDKNVFNAVATDGHRMSVMTEDVLFTDEPQEDITSP 221 Query: 182 -MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 P+ S S VI+P + LM++L R+ + + ++GD S L++GR Sbjct: 222 VAPVSLSGTSSGVILPIEVCPILMKLLAANKGSFRMDYSESYLTFNLGDVTVVSNLINGR 281 Query: 241 FPDYRRV--LPKNPDKHLEAGCDLLKQAFARA-------AILSNEKFRGVRLYVSENQLK 291 +PD+RRV + K+ + +L++A +RA A+ N GV ++ S N L Sbjct: 282 YPDWRRVAGVVKHNTEKFSVNALVLREALSRALPLINAGAVNKNSNSTGVFVFKS-NALM 340 Query: 292 ITANNPEQEEAEEILDVTYSGAE----MEIGFNVSYVLDVLNALKCE-----NVRMMLTD 342 I + + E +E+LD+ E +EIG N Y+L LN+L ++ L D Sbjct: 341 IKSPSQNLIECKEVLDIEKVAGEQEDKIEIGMNCEYLLRSLNSLVSHSGEEADITFALKD 400 Query: 343 SVSSVQIEDAASQSAAYVVMPMRL 366 +++ ++I ++MP+R Sbjct: 401 TLTGMEI--GFGDDCCDIIMPVRF 422 >UniRef50_C2KY13 Possible DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KY13_9FIRM Length = 374 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/375 (25%), Positives = 179/375 (47%), Gaps = 16/375 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGT--DLEMEMVARVA 58 MK + ++ LL LQ V + + TL I+ +L+ +G + LTG D +E + Sbjct: 1 MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIESICPGD 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLP--EGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAAD 115 ++ EPG + AR F +I + LP EG I + E ++ +S F + + Sbjct: 61 IL---EPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDE 117 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 F +L + + + Q +++ +I T FS A + + G FE + A DGH Sbjct: 118 FTSLPSVEKQEIVEISQLSLRNMINQTIFSTASGENNKKMTGEYFEIIDNQFSITALDGH 177 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTS 234 R+A+ + +S + S IVP++ + EL +++ GG ++ + + ++ D I + Sbjct: 178 RIAIRKTELSESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTIVVT 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ---LK 291 +LV+G + R++L + + + + RA IL+ + + + E+Q LK Sbjct: 238 QLVEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSLSLK 297 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 I ++ +AE + V G ++ IGFN +Y++D L ++ E V + T S S V I D Sbjct: 298 IVSDIGRM-DAE--MPVQQEGKDLLIGFNPTYLMDALQNIEEEEVDLYFTISRSPVFIRD 354 Query: 352 AASQSAAYVVMPMRL 366 +S Y+++P+ Sbjct: 355 -QEESYNYMILPVNF 368 >UniRef50_C8WSN6 DNA polymerase III, beta subunit n=5 Tax=Alicyclobacillus acidocaldarius RepID=C8WSN6_ALIAD Length = 370 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 164/350 (46%), Gaps = 19/350 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVA 58 M+ +E++ L L ++ R +L +L++ G TLS D+ + M + Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVEAS 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML--VRSGRSRFSLSTLPAADF 116 +V +PG +PA+ F ++ R LP+G + + + G + L +F Sbjct: 61 VV---DPGGVVLPAKLFAELVRRLPKGTVDVATIAPHHLSASIDVGTTHAELHGFDPEEF 117 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDV-RYYLNGMLFETEGEELRTVATDGH 175 P L D + L T+ +E+ ++ A ++ R L G+ EG +L +ATDG Sbjct: 118 PELPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVYVGYEGGKLIWMATDGL 177 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTS 234 RLA S + + + S +PR+ + EL R+LD D PL+V ++ + + Sbjct: 178 RLARVSQTVEREM-SIRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNVQLFG 236 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDL----LKQAFARAAILSNEKFRGVRLYVSENQL 290 +L G +PD RV+P+ A C + L++A R IL+ + V LYV + L Sbjct: 237 RLYQGEYPDTSRVMPRE----FAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVL 292 Query: 291 KITANNPEQEEA-EEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMM 339 ++T+ + E+ A EE+ V + G E++I N YVLD ++A + M Sbjct: 293 ELTSRSAERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQM 342 >UniRef50_B0MXV3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXV3_9BACT Length = 374 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 174/379 (45%), Gaps = 20/379 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V LL L + + TLPIL L+++ L +T +DLE +V + + Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE------RMLVRSGRSRFSLSTLPAA 114 G PA+ D L E AE+ + +E R+ +SG S+ A Sbjct: 61 GVESEGTIAAPAKLMLD---SLKEFAEMPLTIEVNDQNWEIRLSWKSG--SLSIPGASAV 115 Query: 115 DFPNLDDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +P + ++ E TL + I T F+ A ++R +NG+ L V TD Sbjct: 116 SYPAIPALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVYINLAPSMLTFVGTD 175 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 H+L + + S S I+P+K L +L ++ ++V S N + + Sbjct: 176 AHKLVKYEVETANEVAS-SFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTLV 234 Query: 234 SKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 +L++G +P+Y V+P NP+K L +L+ R A+ SN +R+ +++N++ + Sbjct: 235 CRLIEGNYPNYNAVIPTANPNKVLVDRIELV-NGIKRVAVCSNPTTNLIRMDIADNRINL 293 Query: 293 TANNPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS----VSSV 347 TA + + A E + +Y G + IGF ++++++L+ + + + L DS V Sbjct: 294 TAQDIDFSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPTIVIELADSTRAGVFKP 353 Query: 348 QIEDAASQSAAYVVMPMRL 366 +D S + ++MPM + Sbjct: 354 VYDDKQSSATLMLLMPMMI 372 >UniRef50_B0VFV2 Putative DNA polymerase III, beta chain (DnaN-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFV2_9BACT Length = 389 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 179/390 (45%), Gaps = 27/390 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA--DGTLSLTGTDLEMEMVARVA 58 M+ +E++ LL +Q + + + T PIL N L++V+ + + ++ TDLE+ +V Sbjct: 1 MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G V A F +I +P+G I + + ++++ G+ F+L FP Sbjct: 61 -AAVSEGGTVAVSAHHFNEIINYMPDGV-INLWRNDDLLMIQCGKVDFNLLIADHTLFPV 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + T+ R+I T F+++ R LNG+ ++ + ATDG ++A Sbjct: 119 IPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKIYPDHHIMAATDGRKVA 178 Query: 179 VCS-----------------MPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIG 219 M I + V ++P K ++ L ++ + L+V + Sbjct: 179 EIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKELKVGLE 238 Query: 220 SNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR 279 N I G++ +S++++ +FPDY++ P L A R A+++ + Sbjct: 239 HNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALVAPDDNL 298 Query: 280 GVRLYVSENQLKITANNPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 + + ++ ++ +N + EA+E + D T++G+ I FN Y+L +L A+ E V + Sbjct: 299 RIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAIDTEKVVI 358 Query: 339 MLTDSVSSVQIEDAA---SQSAAYVVMPMR 365 L S ++ I + Q +++MP+R Sbjct: 359 KLGTSKDAMMIYNETPLPDQEITFLLMPLR 388 >UniRef50_D2RMT4 DNA polymerase III, beta subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMT4_ACIFE Length = 375 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 168/375 (44%), Gaps = 11/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ E + L + + V + PI + + TL L D M+ + V Sbjct: 1 MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNTLQLIAMD-NTYMMNKKLDV 59 Query: 61 QPHEPGATTVPARKFFDI-CRGLPEGAEIAVQLEGER-MLVRSGRSR--FSLSTLPAADF 116 E G +PA+ D+ R P+ QL GE+ M +++ ++R + + + ++ Sbjct: 60 NGEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMDPEEY 119 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + Q + LP+ M +LI T ++ + R G+ E G+ L V T+ HR Sbjct: 120 PAMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQHLTAVGTNTHR 179 Query: 177 LAV--CSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFT 233 LA+ +P G S+++P + + E+ L+G P+ + + I A VG Sbjct: 180 LAIKEVELPEGDD-SEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGSLTII 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 S L++G+FPDY+R +P + +++A R ++ S + VRL + + + ++ Sbjct: 239 SSLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADGITLS 298 Query: 294 ANNPEQEEAEEILDVTYSGAE--MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 + + + +EI+ G + I FN Y+ D + V + S+S ++ Sbjct: 299 SAVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGTDRVSLETNQSLSPARLMP 358 Query: 352 AASQSAAYVVMPMRL 366 +S Y++ P+R+ Sbjct: 359 EGDESYTYILTPVRV 373 >UniRef50_C5NVV0 DNA polymerase III, beta subunit n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NVV0_9BACL Length = 379 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 153/338 (45%), Gaps = 13/338 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 MKFT+ + + L L VS + IL + +++ L L +D + + V Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60 Query: 58 ----ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 ++ E G +P+R F +I R P I ++ G +LV+SG+S F++ A Sbjct: 61 EDDKEVITIEEEGQVVLPSRNFIEIIRKAPTDL-IEIETVGNNILVKSGKSEFNVKGYDA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 D+P E L +I+ T F A D R L G+ F + L ATD Sbjct: 120 NDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNKILTATATD 179 Query: 174 GHRLAVCSMPIG--QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 +RL+ + + S ++I+PRK + RM++ G + + + +N I + + + Sbjct: 180 SYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLYYQNVV 239 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQL 290 +T L+ G +P+ +++P + A A R A++S E K ++L V++N L Sbjct: 240 YTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLVVTDNLL 299 Query: 291 KITANNPEQEEAEEILDV--TYSGAEMEIGFNVSYVLD 326 ++++ + E A E L V T + EI + Y+ D Sbjct: 300 EVSSQSKELGSAVEELKVSSTLEDEKFEISVSGKYLKD 337 >UniRef50_Q72H86 DNA polymerase III, beta chain n=6 Tax=Thermaceae RepID=Q72H86_THET2 Length = 375 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/343 (26%), Positives = 167/343 (48%), Gaps = 19/343 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M TV ++ L L + + R P+ L L +G L L GT+ E+++ R+ Sbjct: 1 MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-----EGERMLVRSGRSRFSLSTLPAAD 115 P VPA+ FF + R LP G +A+ L +G ++ + SGR R LS PA Sbjct: 61 AQSLP-RVLVPAQPFFQLVRSLP-GDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEG 118 Query: 116 FPNL------DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT 169 +P L D + +P + + + +++ ++++ R G+ E + R Sbjct: 119 YPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFRA 178 Query: 170 VATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAH 226 VA+DG+RLA+ +P+ Q + +V VP + V E++R+L G D L + G + Sbjct: 179 VASDGYRLALYDLPLPQGFQAKAV-VPARSVDEMVRVLKGADGAEADLALGEGVLALALE 237 Query: 227 VGDFIFTS-KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 G + + +L++G FPDY+RV+P+ ++ + L++A R ++LS+ + V L + Sbjct: 238 GGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRVDLLL 297 Query: 286 SENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVL 328 E ++ ++A + EE+ G M + +N Y+L+ L Sbjct: 298 EEGRILLSAEGDYGKGQEEV-PAQVEGPGMAVAYNARYLLEAL 339 >UniRef50_Q1PVD8 Similar to DNA polymerase III beta subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVD8_9BACT Length = 366 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 155/330 (46%), Gaps = 15/330 (4%) Query: 29 ILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEI 88 IL + L+VAD LT TDLE+ + R+ G +PA + +I R EI Sbjct: 29 ILQGVKLEVADNCAELTATDLEVLVKYRIPAKACEGEGGIVLPASRANNIFREWAGNEEI 88 Query: 89 AVQLEGERMLVRSGRSRFSLSTLPAADFPNLD--DWQSEVEFTLPQATMKRLIEATQFSM 146 +V +E ++S F + FPN+ D S VE + + +++E +++ Sbjct: 89 SVTVEAGHCTLQSKGGSFKILGDDCLQFPNITKTDVTSFVE--IDGEILGKMVEKVAYAV 146 Query: 147 AHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI-GQSLPSHSVIVPRKGVIELMR 205 + +G+ + G+ + V +D +RLAV + S S IV K + L R Sbjct: 147 SSIKALSIYSGISVKIFGDTIIMVGSDMNRLAVVKRKVRNPENVSMSGIVGVKCLAFLQR 206 Query: 206 MLDGGDNPLRVQIGSNNIR--AHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLL 263 + L V +G + I G+ I S+L++G++P+Y V+PKN DK +E D L Sbjct: 207 FVSECKGTLMVGMGESQIHFIGEKGEVI--SQLIEGKYPNYDEVIPKNNDKKIEVNRDEL 264 Query: 264 KQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSY 323 A+ ++N+++R V +++N+L I ++ EA + Y G + FN Y Sbjct: 265 LSIVRMASFVTNDEYRVVEFSLTKNKLSIFSSAANVGEAALEIAAQYDGPDYTNTFNPDY 324 Query: 324 VLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 +LD L A CE + + L +I+DAA Sbjct: 325 ILDFLRASDCETITIELG------EIDDAA 348 >UniRef50_D2MMX4 DNA polymerase III, beta subunit n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX4_9FIRM Length = 373 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/371 (22%), Positives = 171/371 (46%), Gaps = 7/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MKF++++ + L ++S + P L + ++V +L LT +D ++ + ++ Sbjct: 1 MKFSIKKNPFVTALSELSHAVSTNSPQPSLRGIKIEVKVDSLVLTSSDADISIQKKIISD 60 Query: 60 ----VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + E G + A+ +I R L ++G + ++ F ++ + Sbjct: 61 EENDLNVQEEGHLLIEAKYLLEIVRKLDSDHIFVESIDGTYTQFKGHQALFKINGMAVHQ 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + +E L + T LIE T F+ + Q+++ L G+ FE + +L ATD + Sbjct: 121 YPAIDFNKPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNNQLVCTATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIEL-MRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLA + + S ++ +P K + ++ +L + + + I+ + + IF S Sbjct: 181 RLARKVVDLD-SQDQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRIDNMIFQS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +++DG +P +++P LE L +A R + L +E + RL + +Q +T+ Sbjct: 240 RILDGDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLINDQAILTS 299 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E E+ E L + G ++I F+ SYV++ L L E V + + + Sbjct: 300 RSQEIGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVLVQFKGMMKPFILTSIDD 359 Query: 355 QSAAYVVMPMR 365 S +V+P++ Sbjct: 360 PSTIQLVLPLK 370 >UniRef50_D1B7J0 DNA polymerase III, beta subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7J0_THEAS Length = 379 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 7/339 (2%) Query: 33 LLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL 92 ++++ + G + L TD++ + V VQ G +P + D+ + P+ + L Sbjct: 32 VMIRSSAGRVELFATDMKTSLRCPVQGVQSDLDGEALLPVKVLGDLFKKCPD-PSFTINL 90 Query: 93 EGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEF-TLPQATMKRLIEATQFSMAHQD- 150 E R + SGRSR+ ST ++FP S +F T+ ++ I + + D Sbjct: 91 EEGRGTMVSGRSRYRFSTYDVSEFPKFPSSASAAQFGTVKAQDLRNAISEGGIAASTSDE 150 Query: 151 VRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG 210 YL+ + + + LR V+TD RLA P+ S S S+++P + + EL RML G Sbjct: 151 YPQYLSCVYLQGDQGALRIVSTDSRRLAYSKCPMEGS-SSESMLLPMRAIRELDRMLSGL 209 Query: 211 DNPLRVQIGSNNIRAHV--GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFA 268 V+I + +A+ DF F + VDG+FP Y R++PK+ +E + A Sbjct: 210 QEDGDVRILLDQAQAYFISDDFEFAIRRVDGKFPQYERIIPKSCTTFMEVSRSQMIGALE 269 Query: 269 RAAILSNEKFRGVRLYVSEN-QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 R ++ + + V + +S + + +PE +A E ++ G + I FNV ++LD Sbjct: 270 RLDLVVRDFNKMVAVNLSPGGSCTLRSRSPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDG 329 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 + L+ VR+ + I+ S S Y++ P+ + Sbjct: 330 VKGLQDSLVRLEFNGPGGHLCIKRIGSDSYLYLLAPLAM 368 >UniRef50_UPI00016C54E2 DNA polymerase III, beta chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E2 Length = 375 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 175/379 (46%), Gaps = 21/379 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T +R+ LL Q V + R T P+L N+ D ++L D E+ + + + Sbjct: 1 MKVTCQRDSLLTACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYELRGI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ +P + I R + EI++ E ++ ++ +F + +L +FP++ Sbjct: 61 TVARAGSCILPITELVKILRESSD-PEISLDAGKEAVVAKTSGGKFEMPSLDVNEFPDIP 119 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAHQDV--RYYLNGMLFETEGEELRTVATDGHRL 177 ++ + + ++ ++ T F+ +D R+ L G+L+E +G+E R VATD RL Sbjct: 120 EFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARLVATDTKRL 179 Query: 178 AVCSMPIGQSLPSHSV-------IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 AVC G+++ V +VP K V L + L +RV + +N+ Sbjct: 180 AVCK---GEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDALFKTERA 236 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAF----ARAAILSNEKFRGVRLYVS 286 + LV G+FP YR ++ K K L Q F +AAI+++++ V + Sbjct: 237 TIYTSLVQGKFPPYRDIIGKTT-KEATQKVPLPVQGFLSRVRQAAIMTDDESMRVDMTFD 295 Query: 287 ENQLKITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 + + A + +E L++ Y G EI F+ SY+++ L A++ E ++L S Sbjct: 296 PGSVVMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENEPT-VVLEMSTG 354 Query: 346 SVQIEDAASQSAAYVVMPM 364 + + +Y+VMP+ Sbjct: 355 TRAALFTCGDNYSYLVMPL 373 >UniRef50_B5CVF7 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5CVF7_9BACE Length = 372 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/373 (23%), Positives = 173/373 (46%), Gaps = 10/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 M+ V + LL L+ V + + TLP N L + + G + +T + + V Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAE--IAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + A+ D GL E +E + + + + M+V+ +F++ +P Sbjct: 61 KADFVNRSFLASAKTLLD---GLKEMSEQPLTISIYEKEMIVKYANGKFTMPIEDGKQYP 117 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 ++ S F L + + QF A+ ++R +NG+ F+ + E+ V TDG RL Sbjct: 118 EMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLEKTSYVGTDGSRL 177 Query: 178 AVCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A+ +P + + I+P K L ++ L V++ N++ + ++ Sbjct: 178 AMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLVCRM 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++GR+P+YR V+P+N K + + L A R ++ N V L ++ L ITA++ Sbjct: 238 IEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLITAHD 297 Query: 297 PEQEEAEEILDVTYSGAE-MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE--DAA 353 + ++ E + G E +EIGF ++++++N++ E++ + +TD + + D Sbjct: 298 FDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDISISMTDPSRAAVLSRCDEE 357 Query: 354 SQSAAYVVMPMRL 366 +S Y++MPM + Sbjct: 358 ERSLTYLLMPMSI 370 >UniRef50_P21174 DNA polymerase III subunit beta (Fragment) n=17 Tax=Actinomycetales RepID=DPO3B_MICLU Length = 310 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 151/313 (48%), Gaps = 9/313 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTVER+ L + + L RP +P+L LL+ G +S+ D E AR+ + Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETS--ARLEIE 58 Query: 61 QPHE-PGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G V R DI R LP+ A++ V+L+G ++LV SRFSL+T+P D+P L Sbjct: 59 ADVETAGQVLVSGRLLNDIVRSLPQ-AQVTVELDGGKVLVTCRSSRFSLATMPVGDYPAL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + T+ A + + + D L + E EG+ + +ATD +RLA+ Sbjct: 118 PELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITFLATDRYRLAM 176 Query: 180 CSMPIGQSLP--SHSVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + P S S+++ + + E+ + L GGD + + ++ + G TS L Sbjct: 177 KEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTSVL 236 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 VDG +P R + P++ L +A R A+++ E+ +R+ +E Q+ + A Sbjct: 237 VDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLDAGT 295 Query: 297 PEQEEAEEILDVT 309 + A E + T Sbjct: 296 GDDASANESVPCT 308 >UniRef50_B0MRG5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG5_9FIRM Length = 365 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 174/371 (46%), Gaps = 15/371 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 +KF+V++ +L L + + + L + L + L++TG DLE+ + + + V Sbjct: 2 IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTID-V 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + +R DI R +P G + E ++ + +S+ + + ++P L Sbjct: 61 EGESDGVLVLNSRLICDIVRKMPSGVIRFDEYEPLKLNLMCEDITYSIMGINSEEYPVLP 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + F + + +K +I T +++A D + L G FE + EL ++ DG R+A+ Sbjct: 121 ELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISVDGIRIAIR 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSKLVDG 239 + +VP K + EL+R+L ++ + V + N + + S+L++G Sbjct: 181 KESLLHE--DFDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSRLLEG 238 Query: 240 RFPDYRRV--LPKNPDKHLEAGCDL--LKQAFARAAILSNEKFRG-VRLYVSENQLKITA 294 F +Y ++ +P N +EA ++ L + R +L N+K + V S+N L++ Sbjct: 239 DFFNYTKIIGMPSN----IEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + ++I YSG E I FN Y+LD L C+ V+ + + ++++I Sbjct: 295 ETAIGKLDQKI-KCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQN-TALKIVPLEG 352 Query: 355 QSAAYVVMPMR 365 S ++V P+R Sbjct: 353 DSFTFIVSPVR 363 >UniRef50_A8Z6B4 DNA polymerase III, beta subunit n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z6B4_SULMW Length = 366 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/373 (22%), Positives = 171/373 (45%), Gaps = 16/373 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF LLK L+ + + LPIL L++ L++T +DLE+ M ++ Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLR- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +P + DI + +PE ++ ++ + +++S + ++P Sbjct: 60 INSINYGSAAIPYKILIDILKNIPEQPLTFIKEIDNKLKIIYQNGEYNISIYSSEEYPKY 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + + +I T F++ + D+R +NG+LFE + V+T+ L Sbjct: 120 SILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNTTILVK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK---- 235 + S I+ +K + L L+ D V I N + F+F K Sbjct: 180 YTRKDILSNNKIKFIISKKTLNILKNNLENSDE--YVYISYNKLNTS---FLFKKKKIIC 234 Query: 236 -LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L++G +P+Y ++ +K L + + R S + + L +S+NQ KI++ Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFS-KIITQIILNLSKNQSKISS 293 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + +A E L +Y G ++IGFN +++D+L+ + C++++ + D+ SS + S Sbjct: 294 WD-YNNKAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDIKFEILDNKSSCKFTPNLS 352 Query: 355 --QSAAYVVMPMR 365 + ++MP++ Sbjct: 353 NIEEILILIMPIK 365 >UniRef50_C7H084 DNA polymerase III, beta subunit n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H084_9FIRM Length = 363 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/366 (22%), Positives = 178/366 (48%), Gaps = 5/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT ++ + + L V + R T+PIL +L++ + + + GTDLE+ +++++ + Sbjct: 1 MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLK-I 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G V A+ F++I R LPEG E +++ +++ S F L L FP Sbjct: 60 KNDEVGKIIVNAKLFYEIIRKLPEGNIEFFTDESKKLHIKNLNSEFELEYLEEEKFPFAK 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + E +F+ + + +I+ + ++ + + L G+ E + V +DG+R+A+ Sbjct: 120 EVKGE-KFSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISLVGSDGYRIAIT 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 I ++VP + ++ + ++L + + IG +I+ + + KL++G Sbjct: 179 KENIINE-QEKDILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLKLLEGT 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITANNPEQ 299 + DY++ + + + L A R +LS EK + L + N LKI ++ Sbjct: 238 YIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIETSSDIG 297 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEI+ + G + E N ++LD + + E +++ + + + IE+ + + + Sbjct: 298 YAKEEII-LDKMGEDNEFAINCKFLLDAIKNIDGEELKLKIGKNERFILIEEVENDRSQF 356 Query: 360 VVMPMR 365 ++M ++ Sbjct: 357 LIMNLK 362 >UniRef50_B3ZXM6 DNA polymerase III, beta subunit n=1 Tax=Bacillus cereus 03BB108 RepID=B3ZXM6_BACCE Length = 377 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 183/381 (48%), Gaps = 20/381 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F++ + L+ L +VS +PILG + ++ + T+ L G++ E + ++ Sbjct: 1 MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60 Query: 60 --VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADF 116 + + GA +P + DI R LP G EI +L+ + +L V + S+FSL+TLP+ ++ Sbjct: 61 DNLSVEKEGAIVIP-KTISDIVRKLPNG-EICFKLQKKGLLDVSTKNSKFSLNTLPSEEY 118 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 PN + + + + A + + +E T + A D R L G+ + +++ AT+GH Sbjct: 119 PNFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGIEIKITNKKIAFSATNGHL 178 Query: 177 LAVCSMPIGQSLPS-----HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 L+ C + + + IVP K + + ++ + ++ L + N + Sbjct: 179 LSQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFN--NDTLTLGFEENAVTLFSSTQY 236 Query: 232 FTSKLVDGRFPDYRRVL--PKNPDKHLEAG-CDLLKQAFARAAILSNEKFRGVRLYVSEN 288 ++L++G FPD++ L P++ +L+K I S + + + EN Sbjct: 237 IKTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASIMYEN 296 Query: 289 -QLKITANNPEQEEAEEILDVTYSG--AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 +L ++ NN Q E T +G ++++GFNV+Y+L+ L +L E V + + Sbjct: 297 SELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSGEEVTLGYIGDIK 356 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 + I + + +++P+RL Sbjct: 357 PI-ILNGNREEEFKLMLPVRL 376 >UniRef50_Q7VH41 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VH41_HELHP Length = 353 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/370 (21%), Positives = 165/370 (44%), Gaps = 21/370 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ + L L L R I ++ + D L L TD E+ + + + + Sbjct: 1 MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYIN-I 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TV ++ DI + L + + ++ + + + + G++R L A +FP Sbjct: 60 PCQAQGNATVNGKQILDIIKRLKDD-NVTIETKQDSLHISQGKARTKLPMFNADEFPKFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + + I+ ++ + +Y LNG L + + VATD RLA+ Sbjct: 119 EYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDIKDYSFNFVATDTRRLALI 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRM----LDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 S+ + S+++P+K + E+ ++ L+ NP + + +N D+ F +KL Sbjct: 179 EYK-NPSINALSLVIPKKAINEIQKLFVDTLEIYHNPTHLILKNN-------DYTFYTKL 230 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 + G++PDY +++P K + L K F A +++ +S N++ + N Sbjct: 231 ISGKYPDYEKIIP----KEFKHKIVLPKDKFVDALQFVKSLANNIKITLSPNEVLFESLN 286 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E EA ++V + + +G N Y+LD L+ + + + + + + S++ Sbjct: 287 EESGEASTQIEVQTNIENLTLGINSKYILDFLSQIDANEFTLCINEPNTPFVV---MSEN 343 Query: 357 AAYVVMPMRL 366 + V+MP+ L Sbjct: 344 FSTVIMPVIL 353 >UniRef50_C2D9K3 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9K3_9ACTN Length = 369 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 173/374 (46%), Gaps = 16/374 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 MKF+V ++ + + V + + TLP+LG + +Q TL+L DL++ + ++ A Sbjct: 1 MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 V+ E G T VP + + LP+ A I ++ + ++ +S + LSTL AADFP Sbjct: 61 VE--EEGQTVVPGLFLSKLVKNLPD-APITMETTPTQAILTCLKSTYELSTLDAADFPEF 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRY-YLNGMLFETEGEELRTVATDGHRLA 178 D LP + ++E + + +D+ L G+ + +L ATD HRL Sbjct: 118 PDITPSQSIELPSDLLNDMVERV-YRVTKEDISNPILGGITLVAQENKLTMYATDSHRLV 176 Query: 179 VCSMPI-GQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIG--SNNIRAHVGDFIFTS 234 + S+ S + I+P EL+ + P R+QIG N + + + S Sbjct: 177 IIDTNTETASIDSEFTAIIPAVCFHELLNL--PTITP-RLQIGLTDNQVIFSFENTTYVS 233 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS-ENQL-KI 292 ++G FP+Y+ + P + L + L QA R A+++ K GV V +NQL + Sbjct: 234 LKIEGMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITL 293 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVL-NALKCENVRMMLTDSVSSVQIED 351 A++ E ++E T G + N ++L+ + + + + DS + I+ Sbjct: 294 KADSSEFGASKEEFSATIEGNPISFSMNYQFILECCRSTTHADEMTFEIVDSFQPIVIKS 353 Query: 352 AASQSAAYVVMPMR 365 + + +++P+R Sbjct: 354 FGTMNYQCLLIPLR 367 >UniRef50_A1B0N7 DNA polymerase III beta subunit family protein n=2 Tax=Paracoccus denitrificans PD1222 RepID=A1B0N7_PARDP Length = 372 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 96/353 (27%), Positives = 161/353 (45%), Gaps = 26/353 (7%) Query: 24 RPTLPILGNLLLQVADGTLSLTGTDLE-MEMVARVALVQPHEPGATTVPARKFFDICRGL 82 R T+P+LG L ++ + L + T+L+ MV A +P + AR + G Sbjct: 36 RNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCIEGKP--FVIDARLLLALLTGA 93 Query: 83 PEGAEIAVQLEGERMLVRSGRSRFSLSTL-PAADFPNLDDWQSEVEFTLPQATMKRLIEA 141 +++ L+G + +R G + + L PA+D+P + ++P+A + R+I Sbjct: 94 ERDDSVSITLDGNVVTLRIGPAVARVQLLCPASDWPTAPSTKGMSWVSIPEAALARMIGR 153 Query: 142 TQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVI 201 +++++ ++ RYYLNG+ L ATDGHRLA+ I LP +I PR V Sbjct: 154 VRWAISTEETRYYLNGIYMHGREGRLAVTATDGHRLALYHSDIEYKLP--DLIFPRYSVA 211 Query: 202 ELMR-MLDGGDNPLRVQIGSNNIRAHV-GD-FIFTSKLVDGRFPDYRRVLPKNPDKHLEA 258 L M DGG+ LR+ ++ +R + GD + T K +DG +PDY RV+ PD+ Sbjct: 212 ALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLTVKCIDGAYPDYTRVI---PDRGTMR 268 Query: 259 GCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI-----TANNPEQEEAEEILDVTYSGA 313 G ++ +A R N + R+++ + LK AN ++ + Sbjct: 269 GYAVINRALLRR--FPNTR----RMHLLRDALKFDLDKRVANLNSVGLGIDVEIPIEADG 322 Query: 314 EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 + IGFN YV +V + + + ED VVMPMR+ Sbjct: 323 DFAIGFNEGYVREVARIFDTVRIEASTARDAALILTED---PDLTVVVMPMRV 372 >UniRef50_A6CJV3 DNA polymerase III subunit beta n=2 Tax=Bacillus RepID=A6CJV3_9BACI Length = 374 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/374 (22%), Positives = 178/374 (47%), Gaps = 11/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ + L K L V + G P++P+L + ++ L LTG D ++ + + L Sbjct: 1 MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60 Query: 61 QPHE-----PGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 Q PG VP R F ++ + +P+ I ++ +++ + SG +LS L D Sbjct: 61 QADAGRIIAPGKLVVPVRYFHNLIKKMPDDTFIKIKKFNKQVKITSGEIETTLSLLNEED 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P + + + + +I+ TQF+++ D R L G+ +E +L +AT+ Sbjct: 121 YPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTLIATNSQ 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 R+A+ + + + S I+P K + EL+ +D +++ N + D ++ Sbjct: 181 RMAMRKAAMSSPV-TGSFILPGKAMTELVNAID-KHQFIQIYPSDNLVIFQADDLFLYTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVS-ENQLKIT 293 L+ G +PD +++P+ + L Q RA +L++E K V ++ E ++++T Sbjct: 239 LISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNEGRIQLT 298 Query: 294 ANNPEQEE-AEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++ E E++ + G ++I F+ ++ + L ++ E V + S+ + I+ Sbjct: 299 SSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMSEELVSLSFGGSLRPIIIKP 358 Query: 352 AASQSAAYVVMPMR 365 +S +++ P+R Sbjct: 359 YNKKSTIHLISPVR 372 >UniRef50_C7M115 DNA polymerase III, beta subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M115_ACIFD Length = 366 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 174/378 (46%), Gaps = 29/378 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPL-------GGRPTLPILGNLLLQVADGTLSLTGTDLEMEM 53 MKF ER+ L LQ S L G R TL G L + G E ++ Sbjct: 1 MKFLCERDELASALQAASRALSSRSSLAGVRWTL----------RGGELEVEGR--ESDL 48 Query: 54 VARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 R L G+ PA D+ R +P ++ V +E +++RSGR+ SL LP Sbjct: 49 AIRSVLGAMGTEGSFQTPASLAVDLVRTMPSD-QVEVVVEDASVVLRSGRAEVSLQLLPT 107 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYL-NGMLFETEGEELRTVAT 172 + P + + + T+P A + + I + A D R + + MLF + + LR VAT Sbjct: 108 LELPGIGEGTTP-SATVPAAALAQGIRQVAVAAARDDGRDLIYSSMLFSSTNDGLRLVAT 166 Query: 173 DGHRLA---VCSMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVG 228 DG RLA + ++ + S + V++P + V EL R++ G G + + V IG + VG Sbjct: 167 DGTRLALRDIANLSVAGS-EARDVVIPTRAVRELERLVTGAGVDEIHVGIGERDAVFVVG 225 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE--KFRGVRLYVS 286 ++LVD F DYRR++ K L L A R ++ E +++ ++ Sbjct: 226 TTTLATRLVDEPFRDYRRLVEATYPKKLLLDRLSLVDAMRRLRRMAKEARNSSSIQMNMT 285 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 +++ P + E+LD ++ AE I F+ + D ++ ++ + +R+ ++ + Sbjct: 286 PTACELSVRIPSVGQVHEVLDANFNDAEFTINFDPDMLADGVDGVEGDVIRLEFIEANRA 345 Query: 347 VQIEDAASQSAAYVVMPM 364 + A ++ Y++MP+ Sbjct: 346 ACVSSADTREYLYILMPI 363 >UniRef50_P34029 DNA polymerase III subunit beta n=2 Tax=Spiroplasma citri RepID=DPO3B_SPICI Length = 363 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 169/371 (45%), Gaps = 16/371 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M ++R+ +L L +VS + + +P L +L++V ++ T +D + + + + Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + G+ + + ++ R + + +EG + +++ L+TL +AD+P+ Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVEGNLIKIKANNFDSVLNTLNSADYPH 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE--GEELRTVATDGHR 176 L E +K +I T F++ ++ R NG+ +T+ +EL ATD R Sbjct: 121 LSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATDSFR 180 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L+ C + + VI+P K + E+ R++ D + + N + K+ Sbjct: 181 LS-CKKIDYSNNYNFDVIIPGKFINEIGRLISENDQVSELLLIIINCK---------QKI 230 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITAN 295 ++G++PD +V+ + + L + + R ++LSNE V L + E ++ +T+ Sbjct: 231 IEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQKVLVTSF 290 Query: 296 NPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 E EEI D G + I FN Y+LD L A K + + + + D + I Sbjct: 291 TQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTKEITIKMIDERKPLIITANDD 350 Query: 355 QSAAYVVMPMR 365 Q+ +V+P+R Sbjct: 351 QTLQQLVLPIR 361 >UniRef50_D0WL07 DNA polymerase III, beta subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WL07_9ACTO Length = 377 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 32/385 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MK VE + + V+ + RP+LP+L + ++ DG+++L+ D ++ A V Sbjct: 1 MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHA-VIE 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN- 118 +PG T V R D R LP I ++L+G ++ V G S S+ ++P D+P+ Sbjct: 60 AAVDDPGTTLVHGRLLSDFARALPN-KPIDMELKGAKLEVVCGSSHISMQSMPLEDYPSA 118 Query: 119 --LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 + + V+ L Q T+ +++ A + D L + E EG+ + +ATD +R Sbjct: 119 PPMPEVSGVVDGALWQETVAQVVTAA----SSDDTLPLLVSVCIEIEGKTMSLMATDRYR 174 Query: 177 LAVCSM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 LAV + P + SH ++V + ++ + L G + + I ++ +G F+ Sbjct: 175 LAVRDLTWEPANED-ASHRILVRASRLSDIAKAL-GSVGKVELAIDNSGRTGMIG---FS 229 Query: 234 S-------KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 + +L+DG +P R + P + G + A RA ++ EK VRL S Sbjct: 230 AAGRHNVARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVV-EKNSAVRLSFS 288 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS--- 343 E Q+ + A + + E L+ T G ++ + FN S++ + L A VR+ T + Sbjct: 289 EGQVILEAGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSAPYVRLSFTSASKP 348 Query: 344 ---VSSVQIEDAASQSAAYVVMPMR 365 + +I+ Q ++MP+R Sbjct: 349 AVLTAQPEIDGEDDQEFRLLLMPIR 373 >UniRef50_C5EYP3 DNA polymerase III n=3 Tax=Helicobacter RepID=C5EYP3_9HELI Length = 355 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 148/321 (46%), Gaps = 28/321 (8%) Query: 21 LGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR 80 L + + I ++ L+ D L TD EM + + + +E G TV ++ DI + Sbjct: 21 LDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSLTINEQGIATVNGKQILDIIK 80 Query: 81 GLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQ-------- 132 L EG E+ + E + ++ +S F L A +FP +++ TLP+ Sbjct: 81 RLKEG-EVNLYTNNENLHIKQNKSSFKLPMFNAQEFPTFPEYE-----TLPKLEINSLEL 134 Query: 133 -ATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSH 191 ++MK++ + ++ LNG L + + VATD RLA+ S + Sbjct: 135 ISSMKKIFPVIDINNQKRE----LNGALLDIKEYSYNFVATDTKRLAMVKFD-NASGNNL 189 Query: 192 SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKN 251 ++I P+K + E+ R+ DN + + NI ++IF S L++G+FPDY ++LP Sbjct: 190 ALIFPKKAITEIQRLF--FDN-IELFYNERNIIIKSQNYIFFSHLINGKFPDYEKILP-- 244 Query: 252 PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYS 311 K ++ L K + + N V+L N++ + + + EA+ +++ Sbjct: 245 --KEIQTELVLQKSSIIEGIKVINSVTNDVKLTFRPNEILFESLSQDNSEAQTQIEINLP 302 Query: 312 -GAEMEIGFNVSYVLDVLNAL 331 E+EIG N +VLD L+ + Sbjct: 303 ITEEIEIGINSRHVLDFLSQI 323 >UniRef50_Q82HZ6 Putative DNA polymerase III beta subunit n=1 Tax=Streptomyces avermitilis RepID=Q82HZ6_STRAW Length = 376 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 99/354 (27%), Positives = 158/354 (44%), Gaps = 25/354 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F VER + + + L R +P+LG LLL G LS++G D E AR+ Sbjct: 1 MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSVSGFDF--EAAARIGTD 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G V R+ DICR LP+G ++ LEG R V +G +RF LSTLP ++P L Sbjct: 59 AETVAEGQVLVLGRRLLDICRVLPDG-PVSCVLEGTRFTVEAGGTRFGLSTLPREEYPAL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E ++ + + D L G+ +G+ + A+D +R AV Sbjct: 118 -PVPPEPYGSVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTLAASDRYRYAV 176 Query: 180 CSMPIGQSLPSHSVI---VPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTS- 234 ++ + V+ +P + ++++ R L GD V+IG + RA G F Sbjct: 177 RTLGWQPEAAADGVVEALLPARRLLDIARSLARSGD----VRIGFD--RAAGGLIGFEGG 230 Query: 235 ------KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS-- 286 +L++GR P Y + E C L +A R A+++ E VRL S Sbjct: 231 RMRTVVRLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVA-EANSPVRLDFSAP 289 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMML 340 + + + A + A+ + V E+ FN Y+LD LN+ + VR+ L Sbjct: 290 DGTVLLGAGYGDDVAAQRLPAVLSGAEEVTAAFNPGYLLDALNSFEAPRVRLEL 343 >UniRef50_A8SK33 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SK33_9FIRM Length = 368 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/367 (21%), Positives = 174/367 (47%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + + LL + + + IL +L V D L+L TDLE+ + Sbjct: 1 MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTE-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G + A +I R LP E+ ++++ E++ ++S ++F++ + +P Sbjct: 60 KVEKEGEVLLNASMISNIVRKLP-NDEVYIKVDREKVFIQSENAKFNIIAMDIYSYPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++++V+F + + +K + T F+ A D R LNG+ E E + + VA DGHR+A Sbjct: 119 TFENKVDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKNVDFVALDGHRIAKR 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S I + + VI+P + + E+ +++ G + + V + + + IF+++++DG Sbjct: 179 SFKIEEDI-EKKVIIPPRALNEISKIVPEG-SVVGVSLVKGSAIFTFENTIFSTRVIDGE 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 + +Y+ + + L A RA I+ + + + ++ + + E Sbjct: 237 YLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVEGSSEIG 296 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE-DAASQSAAY 359 + ++I+D+ G ++I FN YVL+ L ++ + V + + I+ + + Y Sbjct: 297 DLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIEQDFVEITFNGRAGACIIKPEDENIDYTY 356 Query: 360 VVMPMRL 366 +V+P+ L Sbjct: 357 LVLPVLL 363 >UniRef50_A8EQT1 DNA polymerase III, beta subunit n=2 Tax=Campylobacterales RepID=A8EQT1_ARCB4 Length = 356 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 83/368 (22%), Positives = 168/368 (45%), Gaps = 16/368 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L + + L + + I ++ L++ + L + TD E+ + + + + Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TTV I + L + +I ++ ++++ +S F L T A +FP L+ Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRL-KNEDIILEATNNNLVIKQNKSTFKLPTYDANEFPVLN 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E ++ I ++ + + ++ LNG L + + +++ V+TD RLA+ Sbjct: 120 KSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQKINFVSTDTRRLALS 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRM-LDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + +I+P+K +IE+ ++ LD ++ + N+ F +KL++G Sbjct: 180 FLE-NMNNDEAQLIIPKKAIIEIQKLFLDEA----KISYDNTNLVISNQHTKFFTKLING 234 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FPDY R++P N L+ L K + L F +++ S + I + E Sbjct: 235 KFPDYERIIPSN----LKHNFFLPKNVLVESIKLVTSLFSNIKITFSSKSI-IFESLDED 289 Query: 300 EEAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 EA+ +D+ + E + N Y+LD L+ E V++ +S +ED Sbjct: 290 SEAKTQIDIDLNIPNEFFLAVNAKYLLDFLSMTNNEKVKIGFNESNLPFYLED---DKFI 346 Query: 359 YVVMPMRL 366 +VMP+ L Sbjct: 347 TIVMPIVL 354 >UniRef50_A8ZRY7 DNA polymerase III, beta subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZRY7_DESOH Length = 377 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 94/400 (23%), Positives = 179/400 (44%), Gaps = 57/400 (14%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +VE++ +++ L V G G R +L I N+L++ +S++ TD+E Sbjct: 1 MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYPAT 60 Query: 61 QPHEPGATTVPARKFFDICRGL-----------PEGAEIAVQLEGERMLVR-SGRSRFSL 108 +E G + AR+F++I + + + +I+ +G R+ + G S Sbjct: 61 IENE-GTIAINARQFYEIVKKIDSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119 Query: 109 STLP-----------AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAH---QDVRYY 154 LP +ADF N+ W + + T KR AH ++ Y Sbjct: 120 PQLPVIADVSYIDVNSADFKNMILWATVI---TSSGTEKR---------AHVIGANLEYI 167 Query: 155 LNGMLFETEGEELRTVATDGHRLAVCSMPIGQ---SLPSHSVIVPRKGVIELMRML-DGG 210 +G + +++R V+TDG RL + P S I+P+K + EL + L D G Sbjct: 168 KDGKI-----KKIRMVSTDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKDEG 222 Query: 211 DNPLRVQIGSNN---IRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDK-HLEAGCDLLKQA 266 +QIG+ + I + + I+ + L+ G +P+ + + ++ LK Sbjct: 223 ----TIQIGTRDNYFIVKNNNEIIYIN-LLSGEYPNLETLFSDEKGRTEIKINRKKLKDM 277 Query: 267 FARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLD 326 R +IL+ + ++GV +N L I A NP++ E+ E +D+ Y +++ FN Y +D Sbjct: 278 LERMSILTTDNYKGVIFTFEKNILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFID 337 Query: 327 VLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +N ++ + V + L + + + ++MPM++ Sbjct: 338 AVNLIEDDEVCLKLKEDQAPCIVCGGKHPENINIIMPMKI 377 >UniRef50_C3PE73 DNA polymerase III, beta subunit n=12 Tax=Corynebacterium RepID=C3PE73_CORA7 Length = 444 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 172/393 (43%), Gaps = 33/393 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 + F V ++ L + V+ L + T P+L +L+ D L TG D E+ R+A + Sbjct: 56 VSFRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGM 115 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG V + DI LP EI + E ++L+ G SRF L +P D+P L Sbjct: 116 V-DEPGRIAVAGKLLSDIVASLP-NKEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQL- 172 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 EV T+ I + D L G+ + G + ATD RLA+ Sbjct: 173 PVLPEVTGTINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMTATDRFRLAMR 232 Query: 181 SM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSN-NIRA------HVGD 229 + P+ + + ++VP K + E R LD N P+ + +G+ NI A H + Sbjct: 233 TFEWEPVSSDVQAK-LLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHADN 291 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 T++++D FP+ +LPK L++A R ++L++ + +R+ SE + Sbjct: 292 RETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFSEGE 350 Query: 290 LKITANNPEQEEAEEILDVTYSGAE-MEIGFNVSYVLDVLNALKCENVRMMLTD-SVSSV 347 + + A + A E L ++G E I FN SY+ D L + V T+ S ++ Sbjct: 351 VTLAAGA-DSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTNRVVFGFTEPSRPAI 409 Query: 348 QIEDAASQSAA--------------YVVMPMRL 366 I + AA Y++MP+RL Sbjct: 410 MIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 442 >UniRef50_C1SNE0 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNE0_9BACT Length = 351 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/340 (22%), Positives = 153/340 (45%), Gaps = 12/340 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ + +Q + + +L N+L+ ++L TD+++ ++ V Sbjct: 1 MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV +K DI + +P+G+ I +G ++ + SG+S F LST+ FP + Sbjct: 60 SVEETGTATVSGKKLLDIIKEIPDGSVIDFSFDGSKINIDSGKSSFKLSTISHEIFPTMA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E + + + L++ T F ++ + G G++L A D R+A Sbjct: 120 EITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGDKLEISAADFQRIATS 179 Query: 181 SMPIGQSLPSHSVI-VPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ + + +I +PRK V+EL+++LD D + ++ I +G SKL++ Sbjct: 180 SVKFDEEYSNEFMINIPRKTVMELLKILD-EDEYVEIETDRKQIIFTIGQVKIFSKLIEK 238 Query: 240 RFPDYRRV----LPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 ++ LP + D++K R + +++E GV L + + Sbjct: 239 YIKSITKLFANDLPLQAKLNRAEFLDVIK----RVSAITSEVTHGVVLSFKPGTFTVYSL 294 Query: 296 NPEQEEAEE-ILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 E E I D Y+G ++I FN +V ++++ + + Sbjct: 295 ETEYGTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTD 334 >UniRef50_A7HZD4 DNA polymerase III, beta subunit n=23 Tax=Campylobacteraceae RepID=A7HZD4_CAMHC Length = 356 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 136/288 (47%), Gaps = 20/288 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLP-ILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK V++ +L+ + + P + L I ++L+ DG LS+ TD E+ + + Sbjct: 1 MKVIVKK-GVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYKNRN 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 V + G T K + +GL E EI ++ G + V+ RS++ L DFP Sbjct: 60 VTVIDEGYATANGSKLMNAIKGL-EDDEITLETAGNSLFVKQKRSKYKLPMYNYTDFPEF 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 +++ F + + R ++ S+ + +Y LNG L + + +++ V+TD RL++ Sbjct: 119 PTIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINLVSTDTKRLSL 178 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 ++P S + +I+P+K + E+ ++ + + + +N A F F SKL++G Sbjct: 179 YTIPNQTSTANEKIIIPKKAINEIQKLF---SDKVEIFYDANVFLAVSESFEFFSKLING 235 Query: 240 RFPDYRRV----------LPKNP----DKHLEAGCDLLKQAFARAAIL 273 +FP Y ++ LP++ K + + CD +K +IL Sbjct: 236 KFPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMCDSMKITIKNNSIL 283 >UniRef50_Q3B6Y8 DNA polymerase III, beta subunit n=10 Tax=Chlorobiaceae RepID=Q3B6Y8_PELLD Length = 378 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 22/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T L + +V+ + + N+ L + G L+L +D E+ + A+ V Sbjct: 5 MKLTSSIRQLQDAVSKVAQAIPAKSIDQRFENINLSLEPGELTLFASDGEVSITAKSG-V 63 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER--------MLVRSGRSRFSLSTLP 112 + + G + AR D R + + +V ER + + + + R+ + L Sbjct: 64 ESSDSGNIGIRARTLQDFLRSM---YDTSVMFSIERQEISDHGTVSISTDKGRYRIPCLF 120 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 + P D Q ++ + + M LI+ T F+ + +R + G+LFE EG + VAT Sbjct: 121 QSK-PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPAMMGVLFELEGSIITAVAT 179 Query: 173 DGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN--IRAHVGDF 230 DGHRL C L + +V V+ +++ L D+ + +Q S +R G Sbjct: 180 DGHRLVRCRKASSVDLSEKNKVVVPARVLSILQKLAQTDS-VTMQFDSERKFVRFICGSI 238 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 + + L+ +P+Y V+P D++L ++ + R S+ V++ + + Sbjct: 239 VLDAALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRVGRFSS--IGDVKVVLEGQMM 296 Query: 291 KITANNP-EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 KI A N E E A+E L +SG +M IGFN ++ L L +R+ L ++V Sbjct: 297 KIMAENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALAHLDENEIRIELKSPTTAVIF 356 Query: 350 E---DAASQSAAYVVMPMRL 366 + + + +VMP+R+ Sbjct: 357 RPHGEEENDNLIILVMPVRI 376 >UniRef50_C6HYH1 DNA polymerase III, beta subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH1_9BACT Length = 391 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 104/391 (26%), Positives = 170/391 (43%), Gaps = 31/391 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILG-NLLLQVADGTLSLTGTDLEMEMVARVAL 59 M F +E+ L+ L++VS L R + +L ++LL+ + L+L D RV Sbjct: 1 MDFLIEQSVFLEGLEKVS-VLSDRKNIALLSSHILLEAGEDGLTLLSFDQSAGGRLRVP- 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER---MLVRSGRSRFSLSTLPAADF 116 + PG TV +K F I R L G + EG R V + F L + DF Sbjct: 59 AKVTTPGQATVLGKKIFQIVRELAPGMIHVFREEGGRKGMTTVEKDSAVFHLKGIDPRDF 118 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE-----GEELRTVA 171 + + E F +P ++RLIE T ++ Y+NG+LF+ E L V Sbjct: 119 ASFPEITPEYSFGVPIRDLQRLIEKT-LPFVVEEEGTYMNGVLFQRERTSGGKAALNVVG 177 Query: 172 TDGHRLAVCSMPIGQS-------LPSHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNN 222 TDG+ L +P+G+ ++ R+ +LMRML D D L V+I N Sbjct: 178 TDGNGLHHGQIPLGEEGGIDLSEQGEKRFLIKRRHAADLMRMLETDSKDEKLTVEISVNP 237 Query: 223 IRAHVG--DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG 280 A F F +L+D RFP+YR V P+ ++ G + RA ++S EK Sbjct: 238 RYAQFRWLGFYFFVRLLDLRFPNYRDVFPEEHSVTVDMGREAATSIIRRAGLIS-EKNVE 296 Query: 281 VRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM-- 338 + L E + +T+ N + ++ E +G F++ + +L + +RM Sbjct: 297 LELTWDERAVTMTSQNIDIGDSREQTPAIVTGPPSGFFFSIQSLSKLLGVVGGTTLRMQA 356 Query: 339 -MLTDSVSSVQIEDAASQ----SAAYVVMPM 364 +L D + ++ S + YV+MP+ Sbjct: 357 VILDDPLEHSKVPVVWSSVEEPQSRYVIMPL 387 >UniRef50_C3WBN0 DNA polymerase III beta subunit n=3 Tax=Fusobacterium RepID=C3WBN0_FUSMR Length = 376 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/378 (21%), Positives = 168/378 (44%), Gaps = 16/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +ER LK L+ V + PI+ ++ L GT+LE + + Sbjct: 1 MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLFFCGTNLETTITTEMKCK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL- 119 + E G + + + L + + +++G +++ S S S + DFP + Sbjct: 61 EVIESGKIVFQHQLVEEYLKELKDEFVVFSEIDG-NLVIESSDSSSEFSLMNVEDFPKIL 119 Query: 120 ---DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 D Q E F + + ++E +++ + +N + E E ++L+ + TD +R Sbjct: 120 VDEDFSQKEEIFKINSIELAEILEKVKYAASSSSDNLSINCVRMENENKKLKFITTDTYR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGV---IELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 L I + + V +P V +L+R ++ D + + I + + + Sbjct: 180 LVYLEKEIEKINENIDVSIPLNTVEALTKLLRSIESTD--ISFYFINRQIFFKMEEVLVI 237 Query: 234 SKLVDGRFPDYRRVLPKNP-DKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQ 289 S+++D FP+Y+ +L N +K L ++ + R I +NE G Y+ + + Sbjct: 238 SRIIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGATFYLEKKE 297 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQ 348 +++ N E + E+L+V Y G ++I N ++ D + L K +++ + S SSV+ Sbjct: 298 MQVHGVN-EVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNKDITLEFIASNSSVK 356 Query: 349 IEDAASQSAAYVVMPMRL 366 I++ + YV+MP+ L Sbjct: 357 IKEEEANDYLYVLMPLAL 374 >UniRef50_A6DUF3 DNA polymerase III, beta subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUF3_9BACT Length = 209 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 6/212 (2%) Query: 155 LNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSV-IVPRKGVIELMRMLDGGDNP 213 + G+L TVATDG R+A+ IG S I+P K EL ++L+G + Sbjct: 1 MTGLLLTITDGTFTTVATDGRRMALVETVIGSDSSLDSDSILPLKAAQELPKVLEGSSD- 59 Query: 214 LRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL 273 ++V +G + D +F +KL++G FP+YR V+P + H+ D A R + + Sbjct: 60 VKVSLGDTHAVFSTDDVVFQTKLLEGNFPNYRMVMPPGFENHVTMPRDEFYSALDRVSQI 119 Query: 274 SNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC 333 +K V+L ++ ++ I+A N E AE + +Y G +++ FN S+++D L L+C Sbjct: 120 L-DKNPAVKLSLTPTEVLISAMN-NAEVAESPIPASYEGENLDLSFNASFLIDPLRHLEC 177 Query: 334 ENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR 365 + + D +S + + YV+MP+R Sbjct: 178 NKLTLRFNDRLSPTGL--YGDEGFLYVIMPLR 207 >UniRef50_B9L736 DNA polymerase III, beta subunit n=2 Tax=Nautiliaceae RepID=B9L736_NAUPA Length = 350 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/370 (21%), Positives = 174/370 (47%), Gaps = 24/370 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEM--EMVARVA 58 M +E+ + L Q+ + I ++L++ A+ L L TD E+ +++ Sbjct: 1 MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIK-ANEKLILKATDKEIGIKVITNAE 59 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ EPG T+ ++F DI + L + EI ++ E ++ + S + L++ A++FP Sbjct: 60 II---EPGTVTINGKRFLDIIKTL-QNKEIEIKTEENQITITQDSSIYKLTSFNASEFPE 115 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + + + I+ + + + +Y LNG LF+ GE+ V+TD RLA Sbjct: 116 FPNTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDL-GEKTNFVSTDTRRLA 174 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV--GDFIFTSKL 236 V +IVP++ + E+ R++ +QI +++ + + +F +KL Sbjct: 175 VYYSKAKAR--DSKIIVPKRSIAEIKRVIRDD-----MQIFYDDVYLILKNNEILFFTKL 227 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G+FP Y +++P++ L + +I+SNE V++ + +++ + + Sbjct: 228 INGKFPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISNE----VKITIKNDKIIFESIS 283 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E +A+ D+ + N Y++D LN ++ + + L + ++D ++ Sbjct: 284 DETMQAKTSFDLNTPLEDFTFAVNSRYIMDFLNVIENDTFVLGLNEPNIPFVLKD---EN 340 Query: 357 AAYVVMPMRL 366 +VMP+ + Sbjct: 341 FITIVMPLNI 350 >UniRef50_C6WF88 DNA polymerase III, beta subunit n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WF88_ACTMD Length = 365 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEM-VARVAL 59 M T L + V+ L GR P+L ++L+ G + L+G+D E + ++R A Sbjct: 1 MDLTATTSELASAVADVARLLPGRVLDPVLAGVVLRAGPGGVELSGSDRERSLRLSRAAT 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 H GA VPA+ + R L E ++ + +EG R+ VR+G +RF+L L D P + Sbjct: 61 T--HSEGAALVPAKPLAETLRAL-ESPQVRLVVEGSRLAVRTGAARFALPLLELGDHPGV 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + V + P + A + + D G+ G+ L + +D +RL Sbjct: 118 PELPP-VAGSAPAGAFASALAAVATAASKDDALPVFTGVRVHAAGDRLELITSDRYRLGF 176 Query: 180 CSMP-IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S+P G +L + P + E+ + D + ++ ++ + G ++ L+ Sbjct: 177 ASVPWAGGAL---DALAPAVQLAEVAKQA-ARDERVELRADADRLALAWGGGSASTALLA 232 Query: 239 GRFPD--YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 FPD R++L + + D L A RAA S V+L + +L++ ++ Sbjct: 233 APFPDERARKLLAAEGECTVVLEADELAGAVRRAAPYSG-AHGAVQLAAEDGELRVRGSD 291 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI---EDAA 353 P+ E+ E + + SG + F V Y+ D L A V + + + S + ED + Sbjct: 292 PQAGESSESVKASVSGGLLTRSFQVRYLSDALRAFAGRRVELRVQSGLRSTVLTAEEDTS 351 Query: 354 SQSAAYVVMPMR 365 Y+V+P+R Sbjct: 352 GVRLTYLVVPLR 363 >UniRef50_C9M5Q0 DNA polymerase III, beta subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Q0_9BACT Length = 361 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 155/333 (46%), Gaps = 8/333 (2%) Query: 39 DGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML 98 DGT L TDL+ + VQ E GA +P R ++ + + + + + + ER + Sbjct: 25 DGTF-LEATDLKTSISVAAEGVQVVEEGAALLPVRVIGELLKKI-DSEVVELSVTQERGM 82 Query: 99 VRSGRSRFSLSTLPAADFPNLDDWQSEVEFTL-PQATMKRLI-EATQFSMAHQDVRYYLN 156 + +G++++ ++ P FP++ S+ F L P + R++ E ++ Y+ Sbjct: 83 LVAGKNQYDVAVFPTDLFPDMPRPSSDEPFALVPSGELIRVLDEGIVAGSVSEEFPRYIG 142 Query: 157 GMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRV 216 + + ELR V+TDG RL++ S + +S SV+VP + E R L ++ V Sbjct: 143 ACQLQCQKGELRAVSTDGRRLSL-SKCLCESGTDGSVLVPLAPMKEFQRFLQSVESDATV 201 Query: 217 QIGSNNIRAH--VGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS 274 ++ ++ H + ++ + ++ FP+Y +VL K+ L L A R +L Sbjct: 202 RVFTDQALVHFCLPGLEYSVRRIESSFPNYEKVLRKDFTSTLTVNRGLFIGALERVDLLV 261 Query: 275 NEKFRGVRLYVS-ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC 333 E V + +S ++ + +PE +A E L +G ++ FN +Y+LD L A Sbjct: 262 RENNHLVVVTLSPSGEMTLVGRSPEVGKACEHLSGMITGESLKAAFNANYMLDGLRAFHG 321 Query: 334 ENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 + V M S + + S + Y++MP+ L Sbjct: 322 DEVYMTFNGSNGQMNMMRPGSDTFLYMLMPVNL 354 >UniRef50_B8DV07 DNA polymerase III, beta subunit n=20 Tax=Bifidobacteriaceae RepID=B8DV07_BIFA0 Length = 374 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 173/381 (45%), Gaps = 24/381 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MK V + + + RP PIL + L+ ADGT+ L+ E+ AR + Sbjct: 1 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSA--FTYEISARDHIE 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G V + DI + LP + + M + SG + F+L +P +++P+L Sbjct: 59 AGVDESGTVVVLGKLLADISKVLP-AEKTYLSANETTMTITSGPATFTLQLMPESEYPDL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + T + + ++AH + R L G+ GEE+ +TD RL Sbjct: 118 PQLPPQIG-QVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLSSTDRFRLGR 176 Query: 180 CSM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIR----AHVGDFIF 232 S P L + + +V ++++ R +D N + + + N + A+ G I Sbjct: 177 ASFRWTPDEADLDT-AALVRGSHLVKIARSVDERAN-VVIYLDPANPKLIGIANAGR-IS 233 Query: 233 TSKLVDGRFPDYRRVLPKN-PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 T +L+DG FP R+ + P + + DLL A+ L E+ +R+ ++ QL Sbjct: 234 TVQLIDGEFPAVDRLYADSYPIQAVIRKEDLL--GAAKRVSLVAERNAPIRMVFTDQQLT 291 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV---- 347 +TA ++ A+E L + G ++ + FN SY+ + L+ + +RM +T +V V Sbjct: 292 LTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVISEPYIRMKMTTAVKPVEFNG 351 Query: 348 -QIEDA-ASQSAAYVVMPMRL 366 Q ED S S Y+++PMR Sbjct: 352 QQDEDGEESMSYRYLLVPMRF 372 >UniRef50_Q2B8R4 DNA polymerase III subunit beta n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8R4_9BACI Length = 368 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 153/335 (45%), Gaps = 16/335 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +E++ L ++++ L + ++PIL +L+Q L T +D ++ RV L Sbjct: 1 MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60 Query: 61 QPH---EPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR--SGRSRFSLSTLPAAD 115 + E + V + FD+ + L I+ +L ++++V ++R + A D Sbjct: 61 EGAVNIESEGSAVFTKDCFDVTKKLK--GSISFELIDQKVIVSQDKTKTRLEFGVMDAED 118 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNG--MLFETEGEELRTVATD 173 +P + + ++ T F+ + ++R L G M F +G VATD Sbjct: 119 YPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNF--VATD 176 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRL + GQS + SV V K + ++++ D L V NI G I+ Sbjct: 177 SHRLG--KVTTGQSEETMSVTVHAKKLEQVLKSFDFSTEVL-VFPTELNIAFANGHTIYY 233 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 ++L+DG FPD R++PK + L + + + +S E V L ++ +++ Sbjct: 234 TRLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAISREGI--VMLSINGLFVELA 291 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVL 328 A + + EI ++ G +E+GF+ YVLD L Sbjct: 292 ALGDTAKGSREIAYESFEGESLEVGFSAKYVLDAL 326 >UniRef50_C3I1F8 DNA polymerase III, beta subunit n=1 Tax=Bacillus thuringiensis IBL 200 RepID=C3I1F8_BACTU Length = 271 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 128/264 (48%), Gaps = 21/264 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTD------------ 48 M+F V + + L +VS + + +PIL + + ++L ++ Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 49 LEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFS 107 +E E +A + + G VPA+ F +I + +P ++IA++ + E+++ ++S S Sbjct: 61 IEDEKIATIL-----KAGTIVVPAKYFIEIIKKMP--SDIAIKSKNEQIIKIQSEEITLS 113 Query: 108 LSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEEL 167 L+ PA +FPN+ + E + + + + T F++A + R L G+ +L Sbjct: 114 LNGFPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGLHIVLSNNKL 173 Query: 168 RTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 ATD HRLA+ I + ++ IVP + EL+++++ + + + ++I + Sbjct: 174 ICAATDSHRLAIRETRISSDVKANC-IVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKN 251 G S+L++G++P+ ++P + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPND 256 >UniRef50_Q7MTT8 DNA polymerase III, beta subunit n=2 Tax=Porphyromonas gingivalis RepID=Q7MTT8_PORGI Length = 377 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 167/378 (44%), Gaps = 16/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V LL+ LQ ++ + R TLPIL ++L ++ L LT D+ M + + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60 Query: 61 Q-PHEPGATTVPARKFFDICRGLPE---GAEIAVQLEGERMLVRSGRSRF---SLSTLPA 113 E G+ VP R + + LP+ EI ++ + + +G F +ST P Sbjct: 61 NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDVSTYPV 120 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 A + + S V P + + AT F+ + + R + G+ + ++L V +D Sbjct: 121 AASLSPEAIVSIV----PAEALLSGLSATLFATSQDERRPIMTGVYLDFFEDKLVFVGSD 176 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 G L QS + +PRK + L +L + + + SN + +G++ Sbjct: 177 GQILVKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLR 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 ++L++GR+P+Y V+P + ++ L R +I SN +R+ + ++++ Sbjct: 237 ARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLS 296 Query: 294 ANNPEQEEA--EEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI-- 349 AN+ + A E + + M IGF +L + E V M L D + I Sbjct: 297 ANDIDFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPSEEVIMTLADQTRAGLILP 356 Query: 350 -EDAASQSAAYVVMPMRL 366 E+A S +++PM+L Sbjct: 357 AENAPGISLCNLLLPMKL 374 >UniRef50_C8PKQ5 DNA polymerase III, beta subunit n=2 Tax=Campylobacter RepID=C8PKQ5_9PROT Length = 359 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/369 (20%), Positives = 164/369 (44%), Gaps = 16/369 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ L + + S L + I +LL+ DG S+ TD E+ + + V Sbjct: 1 MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G T K + +GL + + + ++ + V+ +S++ L DFP+ Sbjct: 61 SIETEGEATANGGKLLSVIKGLSDDS-VTLETVNGALFVKQKKSKYKLPMFETRDFPSFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + + R ++ S+ + +Y LNG L + + L V TD RL+V Sbjct: 120 VVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNLVGTDTKRLSVY 179 Query: 181 SMPIGQSLPSH---SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + I QS +++P+K + E+ ++ + +++ N + A +F F +KL+ Sbjct: 180 KL-ITQSKAGELDTKILIPKKAIGEIQKLF---SDKIKIYYDENVLLAVSENFEFFTKLI 235 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G+FP+Y RV+P + + D + + E +++ + ++ + + N Sbjct: 236 NGKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMCEE----MKVTIKKDGMIFESINE 291 Query: 298 EQEEAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + EA+ ++ T E+ G ++LD L+ ++ E + S ++ + ++ Sbjct: 292 DNSEAKTEIEATIEINGEIVFGVKNRFLLDFLSNIESEIFELDFNSSDTAFVL---SADG 348 Query: 357 AAYVVMPMR 365 V+MP+ Sbjct: 349 LKTVIMPIN 357 >UniRef50_C9RC59 DNA polymerase III, beta subunit n=2 Tax=Ammonifex degensii KC4 RepID=C9RC59_AMMDK Length = 386 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 100/384 (26%), Positives = 170/384 (44%), Gaps = 24/384 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLL-----QVADGTLSLTGTDLEMEMVA 55 ++ V++E L K L + +P +P LG +L+ + +++T TDL+ ++VA Sbjct: 8 LRVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVA 67 Query: 56 RVALVQPH--EPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + Q H G +PA++ FD+ R LPE Q E++LV L+ + Sbjct: 68 SL---QAHLEGEGELWLPAKETFDLVRRLPECTLELGQAGPEQVLVSYPGGEARLTGMNP 124 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGM-LFETEGEELRTVAT 172 +FP +++ Q + LP + + ++ A + G+ + + L AT Sbjct: 125 EEFPAVNE-QEDGYTALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSGGLTFAAT 183 Query: 173 DGHRLAVCSM----PIGQSLPSHSVIVPR---KGVIELMRMLDGGDNPLRVQIGSNNIR- 224 DGHRLAV G S +VP + V+ L ++L G P RV +G + Sbjct: 184 DGHRLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLL--GKEPDRVLLGRHTASF 241 Query: 225 AHVGDFIFTSKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 G+ FT +L+D +FPD+R+ LP+ +P L + L RA ++ V L Sbjct: 242 VWPGEAEFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVVL 301 Query: 284 YVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTD 342 V E + E E +E +D G ++ + FN Y+L+ L L VR+ L Sbjct: 302 LVKEGEEVRLEARSEAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVLDSAAEVRVGLYG 361 Query: 343 SVSSVQIEDAASQSAAYVVMPMRL 366 S + + +V+P+RL Sbjct: 362 PASPATVTVPGDERYLALVLPVRL 385 >UniRef50_C7NAH5 DNA polymerase III, beta subunit n=4 Tax=Fusobacteriaceae RepID=C7NAH5_LEPBD Length = 375 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 170/373 (45%), Gaps = 17/373 (4%) Query: 5 VEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHE 64 V R+ LLK + V + +L + ++ D L GTDLE+ + + Q E Sbjct: 6 VNRKSLLKAITIVENAVSENKIREVLSGIYIETKDEKAILRGTDLELTINTEIE-AQVEE 64 Query: 65 PGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQS 124 G + + + + + + +I + E +++++S + S A +FP + Sbjct: 65 DGKIVIKHKLIEEFLKQISD-EKITLIEENGKLIIQSSSTNTEFSLYNAENFPTQSPLNT 123 Query: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184 VE+ + + IE + S + +N + E E ++L+ +++D +RL + Sbjct: 124 GVEYIFSKQKLLNNIENVKISASTNPENLAVNCIRVEIEEDKLKLISSDTYRLTYIEEDL 183 Query: 185 GQSLPSH---SVIVPRK---GVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 +S S+ VP K G++++M+++D + L+ GS + + ++ +D Sbjct: 184 EESQKGKENLSLSVPLKTIDGLVKIMKLIDEENITLKSD-GSK-VFFQFSNVEILTRTID 241 Query: 239 GRFPDYRRVL--PKNPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLKIT 293 +FPDY+ +L ++ K L D L R +I + E G + N+L +T Sbjct: 242 LQFPDYKSILNNSQHNKKILLNTKDFL-SVLKRTSIFVRENKESKNGGIFNFANNKLLLT 300 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + + EEI+ + G +++I NV ++LD ++ ++ + + L ++ SSV + D Sbjct: 301 GTSENAQIKEEIVTIQ-EGEDLKISLNVKFLLDYISTIEGKVTVLELLNNKSSVIVRDED 359 Query: 354 SQSAAYVVMPMRL 366 + + Y MP+ L Sbjct: 360 NDKSLYFTMPLAL 372 >UniRef50_A9G2I6 DNA polymerase III, beta subunit n=1 Tax=Phaeobacter gallaeciensis BS107 RepID=A9G2I6_9RHOB Length = 378 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 27/353 (7%) Query: 27 LPILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQPHEPGATTVPARKFFDICRGLPEG 85 +PIL L QV G L++T T L+ E AR L + + + + + GL Sbjct: 40 IPILSQNLFQVEGGQLAITATCLDRE--ARQTLSCDTSDAWSFVMNGHRVMKVTAGLSGT 97 Query: 86 AEIAVQLEGERMLVRSGRSRFSLSTL-PAADFPNLDDWQSEVEFTLPQATMKRLIEATQF 144 I + + + + + +++ + P D+P + + + + T+ R + + Sbjct: 98 VTIEHDIAKDLLTLTANGMSLAMNVMAPPEDWPTTNKQEPLGGIEVGENTLLRALNLVKS 157 Query: 145 SMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELM 204 ++ ++ RYYLNG+ + + R V T+GHRLA + + P VI PR G+ L Sbjct: 158 CISTEETRYYLNGIYWTSHDGASRMVTTNGHRLA--RLDLEAPNPPFDVIFPRIGITPLA 215 Query: 205 RMLDGGDNPLR--VQIGSNN----IRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEA 258 ML N L G++ + +GD KL+DG +PDY RV+P E Sbjct: 216 AMLTANGNQLAKITYRGADKTPTLLSIEMGDRELHCKLIDGTYPDYNRVIPSVDG---EQ 272 Query: 259 GCDLL--KQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSG---A 313 D++ K A R +++ G ++ + + I +E+ + + VTY+ + Sbjct: 273 AFDIIIPKSATQRLRLMAGPHDLGCKISPEKGTMTI-----GREDHDGKMSVTYAAKGKS 327 Query: 314 EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +IGFN Y+ + N+R+ D+ + A V+MPMR+ Sbjct: 328 GPDIGFNTLYLAQTTATMG--NIRLRAKDNGAPALATSEAHTDLIMVLMPMRV 378 >UniRef50_B0RH70 DNA polymerase III, beta chain n=4 Tax=Actinobacteria (class) RepID=B0RH70_CLAMS Length = 396 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 151/352 (42%), Gaps = 14/352 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 +KF V R+ + + L R TLPIL +L++ + L+L+ D E+ ++ Sbjct: 14 VKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQ-A 72 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG V R DI LP A + E ++ V G + F+L ++P ++P L Sbjct: 73 DIEEPGRVLVSGRLLADIANRLP-NAPVRFTTEDSKITVSCGSAHFTLLSMPVEEYPTLP 131 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 SE LP + + + DV + G+ E L +ATD +R+AV Sbjct: 132 QI-SEQSGLLPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGLIATDRYRVAVR 190 Query: 181 SMPI--GQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG----DFI 231 + G S S + +VP + + E+ + G + V I + R + Sbjct: 191 EIDWDGGDSTTDGTSRTALVPARTLQEIGKTF-GHSGTISVAITDTDDRQLIAFSADKKT 249 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 TS L+ G FP +R+ P+ D + L +A R ++ E+ +R + + L Sbjct: 250 VTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFTIDGLT 308 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS 343 + A E +A E +D +G + + ++LD L A+ E VR+ T + Sbjct: 309 LEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKT 360 >UniRef50_D1WRR1 DNA polymerase III, beta subunit n=5 Tax=Streptomyces RepID=D1WRR1_9ACTO Length = 375 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 99/372 (26%), Positives = 163/372 (43%), Gaps = 33/372 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTL----SLTGTDLEMEMVAR 56 M+F +ER L + + L R +P+LG LLL G SL + L+ E AR Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 57 VAL-VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 V + + PG V R+ DIC+ LPEG + +EG R V +RF LS LP D Sbjct: 61 VDVDAEVVRPGKVLVMGRRLLDICKVLPEG-PVECAVEGSRFTVSGDGARFGLSVLPLDD 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQF---------SMAHQDVRYYLNGMLFETEGEE 166 +P+L LPQ ++ ++A F + D L G+ +G+ Sbjct: 120 YPSLP--------PLPQ--LRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDT 169 Query: 167 LRTVATDGHRLAVCSMPIGQSLPSHS--VIVPRKGVIELMRMLD-GGDNPLRVQIGSNNI 223 + ATD +R AV ++P + P + V+V + + E+ R L G + + GS Sbjct: 170 MTLAATDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSLGRSGLVSVALDAGSAGF 229 Query: 224 RAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 H G T +L++GR P + ++ L +A R +++++ V++ Sbjct: 230 E-HAGTRT-TVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVADGD-SPVQM 286 Query: 284 YVSENQLKITAN-NPEQEEAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLT 341 S +T E + A + L + GA E+ + FN Y+ D L + ++R++L Sbjct: 287 AFSRADSSVTLRAGYEDDVASQRLPASLEGAEELTVAFNPGYLADALASCTEPSLRLLLL 346 Query: 342 DSVSSVQIEDAA 353 + I D A Sbjct: 347 GAGQRAMITDEA 358 >UniRef50_UPI0001BC56D7 DNA polymerase III, beta chain n=2 Tax=Fusobacterium RepID=UPI0001BC56D7 Length = 373 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 13/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V R LK L+ V + PIL + ++ L L GT+LE + V+ Sbjct: 1 MQVIVNRNEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP--- 117 + + G + + L E EI ++++GE ++V G + ST P D+P Sbjct: 61 EVVKEGKVAFQYPLIDEYMKELKE-EEIQIRMDGEALMVEGGDAVSEFSTFPYEDYPKAF 119 Query: 118 -NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 N + + EV + + + + +FS D ++ + E E+ V TD +R Sbjct: 120 ENFEKQEEEVLLRMNSIELATIFDKLKFSAGSTD-NPAIHCVRVEGRDGEIHFVTTDTYR 178 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L + +P + V ++ G + ++V + D S L Sbjct: 179 LTYLHKSFSLQ-EDFQMSLPLETVEACSKIFRGLEAEVKVYFDKKFAHFLIEDIHIVSSL 237 Query: 237 VDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAIL--SNEKFR-GVRLYVSENQLKI 292 ++ FP Y+ +L N DK + + L R I +NE+ + G ++++ LKI Sbjct: 238 IELTFPAYQTILSNGNYDKIMGISTESLISILRRVIIFVRNNEESKYGATFHLADGVLKI 297 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLD-VLNALKCENVRMMLTDSVSSVQIED 351 N+ + EE + V Y GA +++ N Y+ D V N K + + + S +SV++ + Sbjct: 298 KGNSDIAKINEE-MAVDYQGAPLKVSLNTKYLFDFVQNLEKDTELSLEMLSSKTSVKVHE 356 Query: 352 AASQSAAYVVMPMRL 366 + Y++MP+ L Sbjct: 357 KGKEDYIYILMPLAL 371 >UniRef50_A4F6K2 DNA polymerase III beta subunit n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F6K2_SACEN Length = 364 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 22/353 (6%) Query: 23 GRPTLPILGNLLLQVADGTLSLTGTDLEMEM-VARVALVQPHEPGATTVPARKFFDICRG 81 GR P+L ++L L L GTD E + ++R A + H G VPAR + R Sbjct: 25 GRLLDPVLAGMVLTATPQGLELAGTDRERGIRLSRRA--RTHAEGRILVPARPLAETLRN 82 Query: 82 LPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQA-----TMK 136 L + E+ + +EG ++ +R+ +RF+L L A P V P+A + Sbjct: 83 L-DSVEVRLVVEGAKLALRTRNARFALPLLDLAAHPG-------VRAAPPRAGALDAALL 134 Query: 137 RLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVP 196 + + + D G+ + GE L TD R+AV ++P V+VP Sbjct: 135 PAVAVVAAATSRDDALPVFTGVHVKQRGERLVLAGTDRFRMAVATLPWRPGTDDLDVLVP 194 Query: 197 RKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHL 256 + E+ + G + LR ++ + D ++ L+D FPD R L D + Sbjct: 195 SGLLTEVAKQASGDEVMLRAD--ADRVGLSWADAEVSTTLLDAPFPDESRHLLPEVDCAV 252 Query: 257 EAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEME 316 E D + A R + + V L V + ++++ A +P+ +A+E + T +G Sbjct: 253 EVRADEVAGAVRRVSPYAGAHG-AVVLDVGDAEVRVRAADPQFGDAQEAVKATVTGDRFS 311 Query: 317 IGFNVSYVLDVLNALKCENVRMMLTDSV---SSVQIEDAASQSAAYVVMPMRL 366 F Y+ D L A VRM L + + + DA YV+MP R+ Sbjct: 312 PAFQPRYLADALQAFAGRTVRMGLRSGLRRSTVISDVDAPEADLRYVLMPKRI 364 >UniRef50_C2BTM3 DNA polymerase III beta subunit n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BTM3_9ACTO Length = 380 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/380 (22%), Positives = 162/380 (42%), Gaps = 18/380 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + R+ L + + S + RP + +L + ++ + + + D E+ VA Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + EPG V + + R LP A+ + E + + G + L + + ++P L Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKFATEDNYLHITCGSFKQKLIMMHSEEYPPL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E + A I + + + L G+ E ++L +ATD +R+A+ Sbjct: 121 PQ-MPESAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPDKLYLLATDRYRMAL 179 Query: 180 CSMP-IGQSLPSHSVIVPRKGVIELMR-MLDGGDNPLRVQIGS-NNIRAHVG----DFIF 232 MP G ++V K + + + + GD + V +GS NN + +G +F Sbjct: 180 KEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGD--VEVAVGSANNPASLIGLAANGRVF 237 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLK 291 TS++ DG +PD RR+ P+ + D + R AI+ SN + + L + QL+ Sbjct: 238 TSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSGQLE 297 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 A N + A + + +G ++ + FN +L+ L A+ R+ D V I Sbjct: 298 FLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAIDEPYARLSFKDEAKPVVITG 357 Query: 352 AASQSAA------YVVMPMR 365 ++ Y++MP+R Sbjct: 358 QKEETGEDNLTFRYLIMPIR 377 >UniRef50_C9LP65 DNA polymerase III, beta subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP65_9FIRM Length = 369 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 157/372 (42%), Gaps = 12/372 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T + + L L++V + T + DG + D + + Sbjct: 1 MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIG-IRTFCEA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-MLVRSGRSRFSLSTLPAADFPNL 119 E G+ + + + +P G + Q +GE + ++G+ T A+FP + Sbjct: 60 DVEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGESTVFFKAGQYNSHFPTRDTAEFPLV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + ++ F+ + G+L + AT+ HRLA Sbjct: 120 TEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINENVFTMAATNSHRLAA 179 Query: 180 CSMPIGQSLPSH--SVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + + +P+ + IV + +++R+L G D+ + + S ++ G+ F S L Sbjct: 180 REISL-EEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLSNL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDL--LKQAFARAAILSNE-KFRGVRLYVSENQLKIT 293 ++G +PDY+RV P + D L A DL ++A + +S + ++ + L+ Sbjct: 239 INGVYPDYKRVFPSSFD--LNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAF 296 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 +P+ +E + GA+++I FN +YV D+L K E + + + + V +E Sbjct: 297 EEDPDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKIILHVKKNGPMV-VEQEE 355 Query: 354 SQSAAYVVMPMR 365 ++ YVV PMR Sbjct: 356 DKAYRYVVTPMR 367 >UniRef50_P33761 DNA polymerase III subunit beta n=20 Tax=Borrelia RepID=DPO3B_BORBU Length = 385 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/385 (19%), Positives = 163/385 (42%), Gaps = 28/385 (7%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F E ++ +++ G + R I LL++V L + TD + + +++V Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQL---------------EGERMLVRSGRSRFS 107 + + A F+D + +I + E E FS Sbjct: 67 TD-FKVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFS 125 Query: 108 LSTLPAADFPNLD-DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF-ETEGE 165 + ++ ++ D+ +E + Q + K++I FS + + LNG+ F + E Sbjct: 126 YEEIENYNYDMVNEDYTFGIE--IKQKSFKKVINRIAFSAHLDESKNVLNGVYFSKDEDS 183 Query: 166 ELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRA 225 +L V+T+GHR+++C + + IVP K + ++ L G+ ++++ Sbjct: 184 KLLLVSTNGHRMSICKTEVIVE-EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYV 241 Query: 226 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 ++ L++G +PDY+ ++PK +LK AR + +K R + L Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYV-DKSRKLVLTF 300 Query: 286 SENQLKITANNPEQEEAEEIL----DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT 341 SE QLK+ + E + Y GA+ + N+SY ++ ++ + + + Sbjct: 301 SELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSKIEIQF- 359 Query: 342 DSVSSVQIEDAASQSAAYVVMPMRL 366 +S + +++ + + + +++MPM L Sbjct: 360 NSGNVLKLSEPENFNFTHLIMPMSL 384 >UniRef50_P24117 DNA polymerase III subunit beta n=4 Tax=Mycoplasma mycoides group RepID=DPO3B_MYCCT Length = 375 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/374 (19%), Positives = 166/374 (44%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTD----LEMEMVAR 56 M F++ R LL L + + + + P L + L V + +++ T + + + Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60 Query: 57 VALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 + ++ + G + + ++ R L + + +E +++++ S FS+ L + D+ Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIKTNNSDFSIGVLNSEDY 120 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + + +EF L +K+ I SM + + L G+ + + TD R Sbjct: 121 PLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNNQAIFSTTDSFR 180 Query: 177 LAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 ++ + I + + +P K +EL ++LD +N L++ I I + + IF S Sbjct: 181 ISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDNVIFQSN 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITA 294 L+DG+FP+ + P + + + + +R +++++ V + V+E++++ + Sbjct: 240 LIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDKIEFKS 299 Query: 295 NNPEQEEAEEILD--VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + EE D V + I FN +++D + L + + + L +S + I + Sbjct: 300 FISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLSEDRIELKLINSTKPIVINNV 359 Query: 353 ASQSAAYVVMPMRL 366 + V++P L Sbjct: 360 YDEHLKQVILPTFL 373 >UniRef50_A0NQ72 DNA polymerase III subunit beta n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NQ72_9RHOB Length = 398 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 27/238 (11%) Query: 24 RPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLP 83 R TLPIL +L++ DG ++ TDL+ME+ RV G+ +P + +D+ R LP Sbjct: 24 RSTLPILSAVLIE--DG--AVIATDLDMEI--RVKFAVKKCEGSAVIPFNQLYDLVRLLP 77 Query: 84 EGAEIAVQ---LEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIE 140 + +Q + + V R+ L + D+P + E PQ + L E Sbjct: 78 ADRSVRLQDTEYKNGGVFVTFQGGRYFLPSYSVVDYPRFSMPEDVREIASPQGLLVAL-E 136 Query: 141 ATQFSMAHQDVRYYLNGMLFETEGEELRT-VATDGHRLAVCSMPIGQSLPSH----SVIV 195 A Q M+ ++ RYYLNG+ F + ++ VATDGHRL +H S I+ Sbjct: 137 ACQSFMSTEETRYYLNGVCFGRDKDDTGVLVATDGHRLIAHDY-------AHDCDGSPIL 189 Query: 196 PRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV-GDFIFTSKLVDGRFPDYRRVLPKNP 252 PR ++ L+R+ + P +V + + + G KL+DG FPD++RV+P P Sbjct: 190 PRAMIVALLRLCE----PEKVLLHEQKMEFVLPGGGYLRCKLIDGTFPDWQRVVPTIP 243 >UniRef50_B8DQA6 DNA polymerase III, beta subunit n=4 Tax=Desulfovibrionales RepID=B8DQA6_DESVM Length = 388 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 80/379 (21%), Positives = 162/379 (42%), Gaps = 15/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M +++E +++ LQ+ + + + L ++ L+ +G+LS+ TD +E A Sbjct: 1 MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE--RMLVRSGRSRFSLSTLPAADFPN 118 + +PG V R F D+ R LP G +I ++L+GE +L+ GR ++ L + F N Sbjct: 60 EIEQPGLAGVQGRAFVDLLRKLP-GGQITLKLDGESGNLLIEQGRRKYKLPVNDSVWFQN 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRL 177 ++ ++ ++ LI+ F ++ +D + + + + + +GH+ Sbjct: 119 FSEFPADGSVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQNAIEACGLNGHQF 178 Query: 178 AVCSMP---IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 A+ + LP +++ +K + EL + L + L + + R G F+ Sbjct: 179 AMLRFTHDELMAMLPPEGILIQKKYLGELKKWLGTDEVELNISEKRLHFRTGDGKETFSL 238 Query: 235 KLVDGRFPDYRRVLPK---NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 L ++PDY L K + LE A R I + + R + N Sbjct: 239 PLSYYQYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSNRCTYFDLDGNGGG 298 Query: 292 I----TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 +A + A E L+ TYSG +I F +++++ + E + + LT S Sbjct: 299 GDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRSERLGLTLTGSEGPC 358 Query: 348 QIEDAASQSAAYVVMPMRL 366 + + ++MPM++ Sbjct: 359 GLTGSDDSEYTVIIMPMKI 377 >UniRef50_A6Q665 DNA polymerase III, beta subunit n=4 Tax=Epsilonproteobacteria RepID=A6Q665_SULNB Length = 355 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/289 (21%), Positives = 142/289 (49%), Gaps = 14/289 (4%) Query: 45 TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRS 104 T +++ +++V L++ G+ T +K DI R L + EI +++ ++V+ S Sbjct: 47 TDSEIGLQIVTDHILIESE--GSFTANGKKLLDIIRILKDD-EIIMEILDNTLIVKQKHS 103 Query: 105 RFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG 164 +F L T +P + + TL ++ + ++ ++ + ++ LNG L + Sbjct: 104 KFKLPTFDPNAYPAFPSVDEKPQITLDSLSLIQNLKKISPAIDTNNPKFELNGALINIKH 163 Query: 165 EELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRM-LDGGDNPLRVQIGSNNI 223 + V TD RLA+ S+P G + S+IVP+K ++E+ ++ LD + + N+ Sbjct: 164 DSTDLVGTDTRRLAIASIP-GNNSEELSLIVPKKAILEIQKLFLDQ----INIYYDETNL 218 Query: 224 RAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 ++ F ++L++G+FPDY+R++P + + + + +S E +++ Sbjct: 219 IITNENYFFYTRLINGKFPDYQRIIPASVKHSITLPKKEMIDSIKMITTISQE----IKM 274 Query: 284 YVSENQLKITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNAL 331 + + + + + + EA+ +++ T + E+ FN Y+LD ++ + Sbjct: 275 TLLSDAIIFNSLSADNVEAKTEIEIGTGLNEKYELSFNSRYILDFISQI 323 >UniRef50_C8SWZ6 DNA polymerase III, beta subunit n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SWZ6_9RHIZ Length = 384 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 48/342 (14%) Query: 22 GGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPA-----RKFF 76 GG + IL + ++VA L+LT +DL++E A + P E GA+ V A +FF Sbjct: 22 GGSRNIEILDHARMEVARKKLTLTMSDLDIEACATI----PCE-GASIVAAIPRAVLEFF 76 Query: 77 DICR--GLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF----PNLDDWQSEVEFTL 130 I R G + + + + ++ R G+ R ++ LP ADF DW + Sbjct: 77 -IARDGGGDDSGTLTFADDMKTVVARHGKGRLTMPILPGADFFLIGAGTQDWSMAIR--- 132 Query: 131 PQATMKRLIEATQFSMAHQD-VRYYLNGMLFETEGEE-----LRTVATDGHRLAVCSMP- 183 L+E + ++ D R+++ G+L E LRT ATDGHR+ + Sbjct: 133 ----ANELVELLRTCVSAMDETRHFIQGVLLHVAAGEDGASALRTAATDGHRVHTVGVEA 188 Query: 184 ------IGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI-FTSK 235 + H + +P + V EL+R+ DG ++ + + G+ I G+ I TSK Sbjct: 189 PELTGGFAERQEGHQGITIPDRTVKELIRIFDGDESEVTLS-GAKGIVTVEGEAIRVTSK 247 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-------VRLYVSEN 288 L+D F DY R+L + L A R +L + +G +R+ + Sbjct: 248 LIDAAFADYARLLQAPGAFRISVAAKALDAAIGRLLVLPRKDGKGKAETARPIRMTPVDG 307 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNA 330 LK+ + +AE+++D G I N Y+ D L A Sbjct: 308 GLKLEIKGNDA-DAEDLIDCEVEGQGEPIVVNCRYIRDALAA 348 >UniRef50_B7IYX6 DNA polymerase III, beta subunit n=3 Tax=Bacillus cereus group RepID=B7IYX6_BACC2 Length = 379 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 124/257 (48%), Gaps = 13/257 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT+ ++ LL L +V TLPIL + L+ L L ++ E +V+ ++ Sbjct: 1 MEFTINKQELLNNLVKVGKYSARSTTLPILCGIYLKATSNELLLVASNKEDTIVSTISET 60 Query: 61 QPH---EPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADF 116 + G VP + DI + LP+ ++ L+ L + SG++ +SL+TL A D+ Sbjct: 61 NNFNIVQEGEVVVP-KTITDIVKKLPDDT-VSFTLDNNNSLHISSGKTNYSLNTLSADDY 118 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P+ + T+ ++R +EAT + A + L G+ +E+ ATD + Sbjct: 119 PDFTTKTLKFLVTISLKKLQRSVEATHYCAAENHSKPQLKGIEISITNKEIAFAATDANT 178 Query: 177 LAVCSMPIG-----QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 L+ ++PI + +S IVP K + + ++M + + L + S +R+ D Sbjct: 179 LSRSTIPITTDNNIEEKLLYSCIVPSKWLYDAIKMFEEEEIELGFEGNSAILRSK--DLH 236 Query: 232 FTSKLVDGRFPDYRRVL 248 +++++G++PD + + Sbjct: 237 IKTQIIEGKYPDVVKFM 253 >UniRef50_B9PE07 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9PE07_POPTR Length = 296 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Query: 7 REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPG 66 ++ +L LQ VSG + R TLPIL N+L++ L LT +DLE+++ L Sbjct: 161 QDKVLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDTGDF 220 Query: 67 ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQS-E 125 TTV ARK DI + +P ++++ + +M+++ G+SRF+L TLPA DFP + + + Sbjct: 221 TTTVGARKLIDILKTMPGDQTVSLETQQAKMVLKGGKSRFTLQTLPAEDFPLVQEAAAFG 280 Query: 126 VEFTLPQATMKRLI 139 F++PQ +K L+ Sbjct: 281 PSFSVPQKVLKDLL 294 >UniRef50_C7REZ6 DNA polymerase III, beta subunit n=5 Tax=Anaerococcus RepID=C7REZ6_ANAPD Length = 370 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 170/373 (45%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + ++ L+ + + + I + + + +LSL D E+ + +V V Sbjct: 1 MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V A +I R LP I G+ ++ S F+L D +++ Sbjct: 61 VDEE-GEMAVKASLISNIVRKLPNDIVIIENKNGKIS-IKCSSSSFNLIAFDYYDKNDIN 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++ + +KR I T+F+ + + + L G+LFE + + VA DG+R+++ Sbjct: 119 IPETK-PIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNMVALDGYRVSLK 177 Query: 181 SMPIG--QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + I+P++ ++E R++ D ++ N++ G K++D Sbjct: 178 KIKLDYPTDYEDSEYIIPKRSLLEWSRIV-SDDLTTKLYKNENDLIFTSGSTTMQCKVID 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNP 297 F DYR ++ + + L + RA +LS+ + +++ +S+N + I + N Sbjct: 237 KNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIELSDNVMLIKS-NS 295 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI--EDAA-- 353 E + E +DV G ++EI FN Y+ + + A +++ S++ I E+++ Sbjct: 296 EIGDVREAIDVEQKGNDLEIAFNARYMQEGVKACDSSKIKLNFKSSLNPCLIYPENSSYE 355 Query: 354 SQSAAYVVMPMRL 366 + Y+V+P+RL Sbjct: 356 DEDFTYLVLPVRL 368 >UniRef50_D2PYX2 DNA polymerase III, beta subunit n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX2_9ACTO Length = 382 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 85/375 (22%), Positives = 161/375 (42%), Gaps = 28/375 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPIL-GNLLLQVADGTLSLTGTDLEMEMVARVAL 59 M+ E++ L + + V+ L RP P+L G LL DGT ++ GTD + A +A Sbjct: 1 MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGT-TIAGTDQAIANRAGLA- 58 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG P R +I + LP G+ + ++ +++ SG + ++L +P +F L Sbjct: 59 CSVDEPGTCLAPGRMLAEIVKLLPPGS-LRLETVDNALVLTSGTATYALPLMPVEEFAPL 117 Query: 120 ----DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 D+ +EVE P+ + S DV L+G+ +++ V+TD + Sbjct: 118 PALPDEHSAEVE---PE-EFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVELVSTDRY 173 Query: 176 RLAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN------------N 222 RL + +P+ + V+VP K + +L+R PLR+ G+ Sbjct: 174 RLGIARVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDATFG 233 Query: 223 IRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVR 282 +R V +++ G + YRR++P L L++ R A+++ + Sbjct: 234 LRNAVRSTCL--RVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVA-AGMTPIW 290 Query: 283 LYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD 342 ++ + L++ A +P E L +G + I F + + D +++ + + Sbjct: 291 FDLTGDDLRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTSQLCVAFAG 350 Query: 343 SVSSVQIEDAASQSA 357 + V I A + A Sbjct: 351 ARKPVLITGATADGA 365 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26464 DNA polymerase III subunit beta n=211 Tax=Gammap... 488 e-136 UniRef50_P22838 DNA polymerase III subunit beta n=29 Tax=Gammapr... 449 e-124 UniRef50_P0A120 DNA polymerase III subunit beta n=15 Tax=Gammapr... 421 e-116 UniRef50_Q9I7C4 DNA polymerase III subunit beta n=77 Tax=Proteob... 420 e-116 UniRef50_Q3JF38 DNA polymerase III, beta subunit n=4 Tax=Gammapr... 403 e-111 UniRef50_Q602N1 DNA polymerase III, beta subunit n=1 Tax=Methylo... 398 e-109 UniRef50_B0RLI9 DNA polymerase III beta chain n=34 Tax=Gammaprot... 398 e-109 UniRef50_A5D6E5 DNA polymerase sliding clamp subunit n=2 Tax=Pep... 393 e-108 UniRef50_A7H676 DNA polymerase III, beta subunit n=6 Tax=Cystoba... 391 e-107 UniRef50_Q31JS4 DNA polymerase III, beta subunit n=1 Tax=Thiomic... 391 e-107 UniRef50_Q1LTW3 DNA polymerase III, beta subunit n=47 Tax=Bacter... 391 e-107 UniRef50_B8GXP6 DNA polymerase III subunit beta n=185 Tax=cellul... 389 e-107 UniRef50_A4G155 DNA polymerase III, beta subunit n=14 Tax=Betapr... 389 e-106 UniRef50_A0L3I8 DNA polymerase III, beta subunit n=1 Tax=Magneto... 384 e-105 UniRef50_Q1GXK0 DNA polymerase III, beta subunit n=2 Tax=Methylo... 382 e-104 UniRef50_Q0EVY9 DNA polymerase III subunit beta n=1 Tax=Mariprof... 381 e-104 UniRef50_Q6MRS0 DNA polymerase III, beta subunit n=1 Tax=Bdellov... 381 e-104 UniRef50_C1A3G7 DNA polymerase III beta subunit n=1 Tax=Gemmatim... 380 e-104 UniRef50_B9XEB7 DNA polymerase III, beta subunit n=3 Tax=Verruco... 379 e-104 UniRef50_D1CG53 DNA polymerase III, beta subunit n=1 Tax=Thermob... 377 e-103 UniRef50_Q02D48 DNA polymerase III, beta subunit n=2 Tax=Acidoba... 376 e-102 UniRef50_A6TJ77 DNA polymerase III, beta subunit n=3 Tax=Clostri... 376 e-102 UniRef50_C5V0W8 DNA polymerase III, beta subunit n=1 Tax=Gallion... 373 e-102 UniRef50_Q7NGD9 DNA polymerase III beta subunit n=1 Tax=Gloeobac... 373 e-102 UniRef50_B2UQB4 DNA polymerase III, beta subunit n=2 Tax=Verruco... 372 e-101 UniRef50_A1AJX3 DNA polymerase III, beta subunit n=10 Tax=Desulf... 371 e-101 UniRef50_C9KQB1 DNA polymerase III, beta subunit n=2 Tax=Veillon... 370 e-101 UniRef50_B1ZXL9 DNA polymerase III, beta subunit n=2 Tax=Opituta... 369 e-101 UniRef50_B1Y548 DNA polymerase III, beta subunit n=92 Tax=Betapr... 369 e-100 UniRef50_Q252K1 DNA polymerase III beta chain n=2 Tax=Desulfitob... 369 e-100 UniRef50_Q5HK00 DNA polymerase III subunit beta n=240 Tax=Bacill... 368 e-100 UniRef50_A3M0Q5 DNA polymerase III n=16 Tax=Acinetobacter RepID=... 367 e-100 UniRef50_P52023 DNA polymerase III subunit beta n=13 Tax=cellula... 367 e-100 UniRef50_B9ZMT6 DNA polymerase III, beta subunit n=1 Tax=Thioalk... 367 e-100 UniRef50_B1L1K7 DNA polymerase III, beta subunit n=35 Tax=Clostr... 366 e-100 UniRef50_D0LFL0 DNA polymerase III, beta subunit n=1 Tax=Haliang... 364 2e-99 UniRef50_B5JPS7 DNA polymerase III, beta subunit n=1 Tax=Verruco... 364 2e-99 UniRef50_A7C334 DNA polymerase III, beta chain n=1 Tax=Beggiatoa... 361 2e-98 UniRef50_A3DHZ5 DNA polymerase III, beta subunit n=5 Tax=Clostri... 361 2e-98 UniRef50_A5FYG4 DNA polymerase III, beta subunit n=2 Tax=cellula... 358 2e-97 UniRef50_B0TAK9 DNA polymerase iii, beta subunit n=2 Tax=Helioba... 357 3e-97 UniRef50_B0CDM3 DNA polymerase III, beta subunit n=1 Tax=Acaryoc... 357 3e-97 UniRef50_P72856 DNA polymerase III subunit beta n=43 Tax=Cyanoba... 357 5e-97 UniRef50_Q1JZF2 DNA polymerase III, beta subunit n=1 Tax=Desulfu... 356 9e-97 UniRef50_Q1B045 DNA polymerase III, beta subunit n=1 Tax=Rubroba... 354 3e-96 UniRef50_C8N933 DNA polymerase III, beta subunit n=1 Tax=Cardiob... 354 4e-96 UniRef50_C8WXS8 DNA polymerase III, beta subunit n=2 Tax=Alicycl... 353 5e-96 UniRef50_C8WIM7 DNA polymerase III, beta subunit n=2 Tax=Corioba... 353 6e-96 UniRef50_C1F9N7 DNA polymerase III, beta subunit n=1 Tax=Acidoba... 353 6e-96 UniRef50_B7K0V0 DNA polymerase III, beta subunit n=13 Tax=Cyanob... 353 7e-96 UniRef50_B0K0W9 DNA polymerase III, beta subunit n=11 Tax=Thermo... 352 2e-95 UniRef50_A7VRS4 Putative uncharacterized protein n=3 Tax=Bacteri... 351 2e-95 UniRef50_Q5GSK7 DNA polymerase III beta clamp subunit n=11 Tax=c... 351 2e-95 UniRef50_Q38ZS3 DNA-directed DNA polymerase III, beta subunit n=... 351 2e-95 UniRef50_D0MJZ8 DNA polymerase III, beta subunit n=1 Tax=Rhodoth... 350 5e-95 UniRef50_UPI0001C311AE DNA polymerase III, beta subunit n=1 Tax=... 349 8e-95 UniRef50_Q67TK6 DNA polymerase III beta subunit n=1 Tax=Symbioba... 349 8e-95 UniRef50_A5I9F2 DNA polymerase III beta chain n=6 Tax=Legionella... 349 1e-94 UniRef50_C9YCP5 DNA polymerase III subunit beta n=1 Tax=Curvibac... 348 2e-94 UniRef50_C0QRL0 DNA polymerase III, beta subunit n=3 Tax=Aquific... 348 2e-94 UniRef50_D0KVU1 DNA polymerase III, beta subunit n=1 Tax=Halothi... 348 2e-94 UniRef50_A0Q3U8 DNA polymerase III, beta subunit n=19 Tax=Franci... 347 3e-94 UniRef50_B5EJ65 DNA polymerase III, beta subunit n=3 Tax=Acidith... 347 3e-94 UniRef50_B8FM62 DNA polymerase III, beta subunit n=1 Tax=Desulfa... 347 4e-94 UniRef50_Q3Z759 DNA polymerase III, beta subunit n=5 Tax=Dehaloc... 347 4e-94 UniRef50_P27903 DNA polymerase III subunit beta n=29 Tax=Actinom... 347 5e-94 UniRef50_Q4FVT2 DNA polymerase III, beta subunit n=5 Tax=Moraxel... 346 8e-94 UniRef50_B0S417 DNA polymerase III beta subunit n=2 Tax=Finegold... 345 1e-93 UniRef50_B8CZN5 DNA polymerase III, beta subunit n=1 Tax=Halothe... 345 1e-93 UniRef50_B9KZ05 DNA polymerase III, beta subunit n=2 Tax=Thermom... 344 2e-93 UniRef50_B9KGQ1 DNA polymerase III beta chain (DnaN) n=12 Tax=An... 344 2e-93 UniRef50_B8HRT6 DNA polymerase III, beta subunit n=2 Tax=Chrooco... 344 5e-93 UniRef50_C7MLD3 DNA polymerase III, beta subunit n=1 Tax=Cryptob... 343 5e-93 UniRef50_B4UTW9 p081 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW9_B... 343 5e-93 UniRef50_Q3A8P3 DNA polymerase III, beta subunit n=1 Tax=Carboxy... 343 6e-93 UniRef50_B4VWR6 DNA polymerase III, beta subunit n=5 Tax=Cyanoba... 343 6e-93 UniRef50_B1GZ05 DNA polymerase III beta subunit n=1 Tax=uncultur... 343 6e-93 UniRef50_A8DJY7 DNA polymerase III beta subunit n=1 Tax=Candidat... 343 8e-93 UniRef50_B2KAM5 DNA polymerase III, beta subunit n=1 Tax=Elusimi... 342 9e-93 UniRef50_C4V1P5 DNA polymerase III beta chain n=2 Tax=Selenomona... 342 1e-92 UniRef50_Q2JU25 DNA polymerase III, beta subunit n=2 Tax=Synecho... 342 1e-92 UniRef50_D1PRN1 DNA polymerase III, beta subunit n=1 Tax=Subdoli... 342 2e-92 UniRef50_UPI00016C0202 DNA polymerase III subunit beta n=1 Tax=E... 341 2e-92 UniRef50_B2A2Y7 DNA polymerase III, beta subunit n=1 Tax=Natrana... 341 3e-92 UniRef50_C0GI72 DNA polymerase III, beta subunit n=1 Tax=Dethiob... 340 3e-92 UniRef50_A4T4T7 DNA polymerase III, beta subunit n=20 Tax=Coryne... 340 3e-92 UniRef50_Q2RMJ6 DNA polymerase III, beta subunit n=1 Tax=Moorell... 340 4e-92 UniRef50_A6G5S7 DNA polymerase III, beta subunit n=1 Tax=Plesioc... 339 8e-92 UniRef50_Q1V1G8 DNA polymerase III n=5 Tax=root RepID=Q1V1G8_PELUB 339 8e-92 UniRef50_O84078 DNA polymerase III subunit beta n=14 Tax=Chlamyd... 339 1e-91 UniRef50_Q2S6M1 DNA polymerase III, beta subunit n=1 Tax=Salinib... 339 1e-91 UniRef50_C9XIB4 DNA polymerase III, beta chain n=6 Tax=Clostridi... 338 2e-91 UniRef50_D1VRK9 DNA polymerase III, beta subunit n=1 Tax=Peptoni... 337 4e-91 UniRef50_D1N691 DNA polymerase III, beta subunit n=1 Tax=Victiva... 337 4e-91 UniRef50_C8VV98 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 336 9e-91 UniRef50_A5FGC6 DNA polymerase III, beta subunit n=12 Tax=Bacter... 335 1e-90 UniRef50_Q1NPP3 DNA-directed DNA polymerase n=2 Tax=Deltaproteob... 335 1e-90 UniRef50_C6XEX5 DNA polymerase III subunit beta n=1 Tax=Candidat... 335 1e-90 UniRef50_B5YGU0 DNA polymerase III, beta subunit n=1 Tax=Thermod... 334 2e-90 UniRef50_Q6MAH0 Putative DNA polymerase III, beta chain n=1 Tax=... 334 2e-90 UniRef50_B8GBZ8 DNA polymerase III, beta subunit n=5 Tax=Chlorof... 334 4e-90 UniRef50_Q7VQU9 DNA polymerase III beta-subunit n=2 Tax=Candidat... 334 5e-90 UniRef50_C1D6W8 DnaN n=29 Tax=Betaproteobacteria RepID=C1D6W8_LARHH 334 5e-90 UniRef50_C7N0K1 DNA polymerase III, beta subunit n=1 Tax=Slackia... 333 7e-90 UniRef50_Q47TU0 DNA polymerase III beta subunit family protein n... 333 8e-90 UniRef50_B8E2I1 DNA polymerase III, beta subunit n=2 Tax=Dictyog... 332 1e-89 UniRef50_Q50790 DNA polymerase III subunit beta n=27 Tax=Coryneb... 331 2e-89 UniRef50_C9RQU7 DNA polymerase III, beta subunit n=1 Tax=Fibroba... 330 6e-89 UniRef50_Q2LYA2 DNA polymerase III, beta chain n=1 Tax=Syntrophu... 330 6e-89 UniRef50_C8NI23 DNA polymerase III, beta subunit n=1 Tax=Granuli... 329 7e-89 UniRef50_A8RAI6 Putative uncharacterized protein n=1 Tax=Eubacte... 329 9e-89 UniRef50_A8F4G9 DNA polymerase III, beta subunit n=7 Tax=Thermot... 329 1e-88 UniRef50_C8XHU9 DNA polymerase III, beta subunit n=2 Tax=Actinom... 328 2e-88 UniRef50_Q11UU6 DNA polymerase III, beta subunit n=13 Tax=Bacter... 327 3e-88 UniRef50_C4FYD9 Putative uncharacterized protein n=1 Tax=Catonel... 327 3e-88 UniRef50_B9KC54 DNA polymerase III, beta subunit n=1 Tax=Thermot... 326 9e-88 UniRef50_C7M837 DNA polymerase III, beta subunit n=7 Tax=Bactero... 326 9e-88 UniRef50_B2V9G3 DNA polymerase III, beta subunit n=2 Tax=Sulfuri... 325 1e-87 UniRef50_A9FMJ3 DNA polymerase III beta subunit n=1 Tax=Sorangiu... 325 1e-87 UniRef50_Q0AK26 DNA polymerase III, beta subunit n=20 Tax=Nitros... 325 2e-87 UniRef50_D1BQ78 DNA polymerase III, beta subunit n=3 Tax=Veillon... 324 3e-87 UniRef50_UPI0001C36FC0 DNA polymerase III subunit beta n=1 Tax=R... 324 3e-87 UniRef50_B1I1H5 DNA polymerase III, beta subunit n=1 Tax=Candida... 324 4e-87 UniRef50_C0WAM5 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 324 4e-87 UniRef50_C6X4N3 DNA polymerase III beta subunit n=1 Tax=Flavobac... 323 6e-87 UniRef50_Q1GC42 DNA polymerase III, beta chain n=4 Tax=Lactobaci... 322 1e-86 UniRef50_Q0RUQ2 DNA polymerase III, beta chain n=25 Tax=root Rep... 321 2e-86 UniRef50_Q0B0Z3 DNA polymerase III, beta subunit n=1 Tax=Syntrop... 321 2e-86 UniRef50_C7QFL8 DNA polymerase III, beta subunit n=3 Tax=Actinom... 321 2e-86 UniRef50_A0LLR4 DNA polymerase III, beta subunit n=1 Tax=Syntrop... 321 3e-86 UniRef50_A9KPP2 DNA polymerase III, beta subunit n=36 Tax=Bacter... 320 4e-86 UniRef50_D2QRF3 DNA polymerase III, beta subunit n=1 Tax=Spiroso... 320 4e-86 UniRef50_P57127 DNA polymerase III subunit beta n=34 Tax=Buchner... 320 4e-86 UniRef50_C3LH37 DNA polymerase III, beta subunit n=48 Tax=Bacill... 319 1e-85 UniRef50_B3DWG7 DNA polymerase sliding clamp subunit n=1 Tax=Met... 319 1e-85 UniRef50_C8P210 DNA polymerase III, beta subunit n=2 Tax=Erysipe... 317 4e-85 UniRef50_C6I687 DNA polymerase subunit III beta n=20 Tax=Bacteri... 316 7e-85 UniRef50_C8W8K5 DNA polymerase III, beta subunit n=5 Tax=Corioba... 315 1e-84 UniRef50_C4WNF5 DNA polymerase III, beta subunit n=1 Tax=Ochroba... 314 3e-84 UniRef50_C3PE73 DNA polymerase III, beta subunit n=12 Tax=Coryne... 314 3e-84 UniRef50_A7HMB7 DNA polymerase III, beta subunit n=3 Tax=Thermot... 313 6e-84 UniRef50_D2RMT4 DNA polymerase III, beta subunit n=1 Tax=Acidami... 313 8e-84 UniRef50_A9B4J2 DNA polymerase III, beta subunit n=1 Tax=Herpeto... 312 1e-83 UniRef50_A6C2Q1 DNA polymerase III, beta chain n=1 Tax=Planctomy... 312 2e-83 UniRef50_B7H828 DNA polymerase III, beta subunit n=20 Tax=Bacter... 311 2e-83 UniRef50_Q1RIS7 DNA polymerase III subunit beta n=15 Tax=Rickett... 311 3e-83 UniRef50_A5KS03 DNA polymerase III, beta subunit n=6 Tax=candida... 309 8e-83 UniRef50_C4DK83 DNA polymerase III, beta subunit n=1 Tax=Stackeb... 309 1e-82 UniRef50_O83048 DNA polymerase III subunit beta n=4 Tax=Treponem... 308 2e-82 UniRef50_C3RP22 DNA polymerase III subunit beta n=4 Tax=Bacteria... 308 2e-82 UniRef50_D2MMX4 DNA polymerase III, beta subunit n=1 Tax=Bulleid... 308 2e-82 UniRef50_Q6AQJ6 Probable DNA polymerase III, beta chain n=1 Tax=... 307 4e-82 UniRef50_A9D4N4 DNA polymerase III, beta chain protein n=1 Tax=H... 307 5e-82 UniRef50_Q21QE8 DNA polymerase III, beta subunit n=1 Tax=Rhodofe... 307 6e-82 UniRef50_B7CCH7 Putative uncharacterized protein n=1 Tax=Eubacte... 306 1e-81 UniRef50_A4XFI2 DNA polymerase III, beta subunit n=1 Tax=Caldice... 305 1e-81 UniRef50_Q89B36 DNA polymerase III subunit beta n=1 Tax=Buchnera... 304 3e-81 UniRef50_B5Y6P1 DNA polymerase III, beta subunit n=1 Tax=Coproth... 303 8e-81 UniRef50_O67725 DNA polymerase III subunit beta n=2 Tax=Aquifica... 303 8e-81 UniRef50_Q04HR5 DNA polymerase III, beta subunit n=2 Tax=Oenococ... 302 2e-80 UniRef50_B1C8Z4 Putative uncharacterized protein n=1 Tax=Anaerof... 301 3e-80 UniRef50_A8SK33 Putative uncharacterized protein n=1 Tax=Parvimo... 301 3e-80 UniRef50_B0MRG5 Putative uncharacterized protein n=1 Tax=Eubacte... 301 3e-80 UniRef50_C2KY13 Possible DNA-directed DNA polymerase n=1 Tax=Ori... 299 1e-79 UniRef50_C1ZD41 DNA polymerase III, beta subunit n=1 Tax=Plancto... 299 1e-79 UniRef50_C2BTM3 DNA polymerase III beta subunit n=1 Tax=Mobilunc... 299 1e-79 UniRef50_C1TP63 DNA polymerase III, beta subunit n=2 Tax=Synergi... 298 1e-79 UniRef50_A6AHE8 DNA polymerase III, beta subunit (Fragment) n=1 ... 298 2e-79 UniRef50_A6CJV3 DNA polymerase III subunit beta n=2 Tax=Bacillus... 298 2e-79 UniRef50_C0QD86 DnaN n=1 Tax=Desulfobacterium autotrophicum HRM2... 298 3e-79 UniRef50_D0WL07 DNA polymerase III, beta subunit n=1 Tax=Actinom... 297 3e-79 UniRef50_A1AV49 DNA polymerase III, beta subunit n=2 Tax=sulfur-... 297 5e-79 UniRef50_B9ML38 DNA polymerase III, beta subunit n=1 Tax=Anaeroc... 296 8e-79 UniRef50_C0EA16 Putative uncharacterized protein n=1 Tax=Clostri... 295 2e-78 UniRef50_O54376 DNA polymerase III subunit beta n=76 Tax=Strepto... 293 6e-78 UniRef50_B6YRT5 DNA polymerase III beta subunit n=26 Tax=Bactero... 293 6e-78 UniRef50_C0R0U9 DNA polymerase III beta (Beta clamp) subunit n=2... 293 6e-78 UniRef50_Q04WF6 DNA-directed DNA polymerase, beta subunit n=7 Ta... 293 7e-78 UniRef50_Q8D3I6 DnaN protein n=1 Tax=Wigglesworthia glossinidia ... 292 1e-77 UniRef50_Q2GAN7 DNA polymerase III beta subunit family protein n... 292 2e-77 UniRef50_C2D9K3 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 292 2e-77 UniRef50_A5EX08 DNA polymerase III, beta subunit n=1 Tax=Dichelo... 291 2e-77 UniRef50_B0MXV3 Putative uncharacterized protein n=1 Tax=Alistip... 291 2e-77 UniRef50_C8WSN6 DNA polymerase III, beta subunit n=5 Tax=Alicycl... 291 3e-77 UniRef50_B0VFV2 Putative DNA polymerase III, beta chain (DnaN-li... 289 1e-76 UniRef50_C9LP65 DNA polymerase III, beta subunit n=1 Tax=Dialist... 288 2e-76 UniRef50_D0YTZ8 DNA polymerase III, beta subunit n=2 Tax=Mobilun... 286 8e-76 UniRef50_C6V443 DNA polymerase III, beta subunit n=2 Tax=Neorick... 285 2e-75 UniRef50_C5JAN5 DNA polymerase III subunit beta n=1 Tax=uncultur... 284 3e-75 UniRef50_Q7VH41 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 284 3e-75 UniRef50_C5NVV0 DNA polymerase III, beta subunit n=1 Tax=Gemella... 284 4e-75 UniRef50_Q8ZSE2 DNA polymerase III beta subunit n=2 Tax=Nostocac... 283 9e-75 UniRef50_C7REZ6 DNA polymerase III, beta subunit n=5 Tax=Anaeroc... 282 1e-74 UniRef50_B8DV07 DNA polymerase III, beta subunit n=20 Tax=Bifido... 282 2e-74 UniRef50_C7LJX6 DNA polymerase III, beta subunit n=1 Tax=Candida... 282 2e-74 UniRef50_UPI00016C54E2 DNA polymerase III, beta chain n=1 Tax=Ge... 280 7e-74 UniRef50_Q72H86 DNA polymerase III, beta chain n=6 Tax=Thermacea... 279 1e-73 UniRef50_D2MK63 DNA polymerase III, beta subunit (Fragment) n=1 ... 278 2e-73 UniRef50_Q7MTT8 DNA polymerase III, beta subunit n=2 Tax=Porphyr... 278 2e-73 UniRef50_B0RH70 DNA polymerase III, beta chain n=4 Tax=Actinobac... 278 2e-73 UniRef50_C1SNE0 DNA polymerase III, beta subunit (Fragment) n=1 ... 277 7e-73 UniRef50_D1B7J0 DNA polymerase III, beta subunit n=1 Tax=Therman... 276 9e-73 UniRef50_B5CVF7 Putative uncharacterized protein n=2 Tax=Bactero... 275 3e-72 UniRef50_B8F8V2 DNA polymerase III, beta subunit n=1 Tax=Desulfa... 274 3e-72 UniRef50_D2R8A9 DNA polymerase III, beta subunit n=3 Tax=Plancto... 273 6e-72 UniRef50_Q1PVD8 Similar to DNA polymerase III beta subunit n=1 T... 273 9e-72 UniRef50_Q82HZ6 Putative DNA polymerase III beta subunit n=1 Tax... 272 2e-71 UniRef50_B9K2Q2 DNA polymerase III beta subunit n=1 Tax=Agrobact... 272 2e-71 UniRef50_Q1J2H7 DNA polymerase III, beta subunit n=4 Tax=Deinoco... 271 3e-71 UniRef50_Q058G0 DNA polymerase III, b subunit n=1 Tax=Buchnera a... 270 4e-71 UniRef50_A8ZRY7 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 268 2e-70 UniRef50_P21174 DNA polymerase III subunit beta (Fragment) n=17 ... 266 6e-70 UniRef50_B3QWU6 DNA polymerase III, beta subunit n=1 Tax=Chloroh... 266 6e-70 UniRef50_A9BHL7 DNA polymerase III, beta subunit n=1 Tax=Petroto... 266 7e-70 UniRef50_C9RC59 DNA polymerase III, beta subunit n=2 Tax=Ammonif... 265 2e-69 UniRef50_A5CBW4 Chromosomal replication initiation protein n=6 T... 265 3e-69 UniRef50_B7KMQ3 DNA polymerase III, beta subunit n=1 Tax=Cyanoth... 264 4e-69 UniRef50_Q3B6Y8 DNA polymerase III, beta subunit n=10 Tax=Chloro... 263 9e-69 UniRef50_A8Z6B4 DNA polymerase III, beta subunit n=1 Tax=Candida... 262 1e-68 UniRef50_C7H084 DNA polymerase III, beta subunit n=1 Tax=Eubacte... 261 2e-68 UniRef50_D2PYX2 DNA polymerase III, beta subunit n=1 Tax=Kribbel... 261 4e-68 UniRef50_D1WRR1 DNA polymerase III, beta subunit n=5 Tax=Strepto... 259 1e-67 UniRef50_B3ZXM6 DNA polymerase III, beta subunit n=1 Tax=Bacillu... 258 2e-67 UniRef50_Q2JF20 DNA polymerase III beta subunit family protein n... 255 2e-66 UniRef50_C0GS25 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 255 2e-66 UniRef50_A6Q665 DNA polymerase III, beta subunit n=4 Tax=Epsilon... 254 4e-66 UniRef50_A4V7F9 Putative DNA polymerase subunit n=1 Tax=Pseudomo... 250 4e-65 UniRef50_UPI0001BC56D7 DNA polymerase III, beta chain n=2 Tax=Fu... 250 8e-65 UniRef50_Q2B8R4 DNA polymerase III subunit beta n=1 Tax=Bacillus... 250 8e-65 UniRef50_B9L736 DNA polymerase III, beta subunit n=2 Tax=Nautili... 250 8e-65 UniRef50_C3WBN0 DNA polymerase III beta subunit n=3 Tax=Fusobact... 248 2e-64 UniRef50_C5EYP3 DNA polymerase III n=3 Tax=Helicobacter RepID=C5... 248 3e-64 UniRef50_C4XT11 DNA polymerase III beta subunit n=10 Tax=Desulfo... 247 4e-64 UniRef50_C9M5Q0 DNA polymerase III, beta subunit n=1 Tax=Jonquet... 246 8e-64 UniRef50_P34029 DNA polymerase III subunit beta n=2 Tax=Spiropla... 246 8e-64 UniRef50_A8EQT1 DNA polymerase III, beta subunit n=2 Tax=Campylo... 246 1e-63 UniRef50_C8PKQ5 DNA polymerase III, beta subunit n=2 Tax=Campylo... 246 1e-63 UniRef50_C7NAH5 DNA polymerase III, beta subunit n=4 Tax=Fusobac... 245 1e-63 UniRef50_Q83H56 DNA polymerase III beta chain n=2 Tax=Tropheryma... 244 4e-63 UniRef50_Q2NKC4 DNA polymerase III, beta subunit n=4 Tax=Candida... 244 5e-63 UniRef50_B8DQA6 DNA polymerase III, beta subunit n=4 Tax=Desulfo... 244 5e-63 UniRef50_A5TXE7 DNA-directed DNA polymerase III beta subunit n=1... 243 6e-63 UniRef50_C8WYB4 DNA polymerase III, beta subunit n=2 Tax=Alicycl... 241 3e-62 UniRef50_P24117 DNA polymerase III subunit beta n=4 Tax=Mycoplas... 240 5e-62 UniRef50_B3PLR8 DNA polymerase III, beta subunit n=2 Tax=Mycopla... 240 6e-62 UniRef50_A7HZD4 DNA polymerase III, beta subunit n=23 Tax=Campyl... 237 6e-61 UniRef50_C6WF88 DNA polymerase III, beta subunit n=1 Tax=Actinos... 237 6e-61 UniRef50_Q6F2A8 DNA polymerase III, beta chain n=1 Tax=Mesoplasm... 236 9e-61 UniRef50_C3I1F8 DNA polymerase III, beta subunit n=1 Tax=Bacillu... 236 9e-61 UniRef50_A3EQC1 DNA polymerase III, beta chain n=3 Tax=Leptospir... 235 2e-60 Sequences not found previously or not previously below threshold: >UniRef50_P26464 DNA polymerase III subunit beta n=211 Tax=Gammaproteobacteria RepID=DPO3B_SALTY Length = 366 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 351/366 (95%), Positives = 358/366 (97%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV L Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG+RMLVRSGRSRFSLSTLPAADFPNLD Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEVEFTLPQATMKRLIE+TQFSMAHQDVRYYLNGMLFETEG ELRTVATDGHRLAVC Sbjct: 121 DWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 SMP+ SLPSHSVIVPRKGVIELMRMLDGG+NPLRVQIGSNNIRAHVGDFIFTSKLVDGR Sbjct: 181 SMPLEASLPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDYRRVLPKNPDKHLEAGCD+LKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE Sbjct: 241 FPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EAEEILDV+Y G EMEIGFNVSYVLDVLNALKCE VR+MLTDSVSSVQIEDAASQSAAYV Sbjct: 301 EAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSAAYV 360 Query: 361 VMPMRL 366 VMPMRL Sbjct: 361 VMPMRL 366 >UniRef50_P22838 DNA polymerase III subunit beta n=29 Tax=Gammaproteobacteria RepID=DPO3B_PROMI Length = 367 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 305/367 (83%), Positives = 340/367 (92%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +ERE LLKPLQQVSGPLGGRPTLPILGNLLL+V + TLSLTGTDLEMEM+ARV+L Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q HE GATTVPARKFFDI RGLPEGAEI+V+L+G+R+LVRSGRSRFSLSTLPA+DFPNLD Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEVEFTLPQAT+KRLIE+TQFSMAHQDVRYYLNGMLFETE ELRTVATDGHRLAVC Sbjct: 121 DWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 +M IGQSLP HSVIVPRKGVIELMR+LDG G++ L++QIGSNN+RAHVGDFIFTSKLVDG Sbjct: 181 AMDIGQSLPGHSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDYRRVLPKNP K + AGCD+LKQAF+RAAILSNEKFRGVR+ ++ QLKITANNPEQ Sbjct: 241 RFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEEI+DV Y G EMEIGFNVSY+LDVLN LKCE V+++LTD+VSSVQ+E+ AS +AAY Sbjct: 301 EEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEVKLLLTDAVSSVQVENVASAAAAY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_P0A120 DNA polymerase III subunit beta n=15 Tax=Gammaproteobacteria RepID=DPO3B_PSEPK Length = 367 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 203/367 (55%), Positives = 267/367 (72%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 +P EPG TVPARK DIC+ LP A I ++++ +++LV++GRSRF+LSTLPA DFP ++ Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + L Q+ ++RLIE T F+MA QDVRYYLNGML E LR V+TDGHRLA+C Sbjct: 121 EGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALC 180 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 SM + H VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLVDG Sbjct: 181 SMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FPDY RVLPK DK + L++AF+R AILSNEK+RG+RL ++ QLKI ANNPEQ Sbjct: 241 KFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEE + V Y G+ +EIGFNVSY+LDVL + E VR++L+DS SS +++A + ++Y Sbjct: 301 EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSSY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_Q9I7C4 DNA polymerase III subunit beta n=77 Tax=Proteobacteria RepID=DPO3B_PSEAE Length = 367 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 204/367 (55%), Positives = 265/367 (72%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++ Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C Sbjct: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ S H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLVDG Sbjct: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNPEQ Sbjct: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +AY Sbjct: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_Q3JF38 DNA polymerase III, beta subunit n=4 Tax=Gammaproteobacteria RepID=Q3JF38_NITOC Length = 367 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 166/368 (45%), Positives = 236/368 (64%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+++RE +++ L V G + R TLPIL N+LL V D LSL TDLE+E+ + ++ Sbjct: 1 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV ARKF +ICR LP G+ + Q + + + SGRSRF+LSTLPA DFP++D Sbjct: 61 SS-EEGKVTVSARKFLEICRALPSGSALEAQYKEGQFYIHSGRSRFTLSTLPAEDFPSID 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E L QA +K+L+ T F MAHQDVRYYLNG+L E E + VATDGHRLA+ Sbjct: 120 SIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIHAVATDGHRLALA 179 Query: 181 SMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S+ G + I+PRK ++EL+R+L+ P+R++ G+N +RA F++KL+D Sbjct: 180 SLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFSTKLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY+RV+P +K A + KQA R IL+N+K+RGV L++S+ +L+ N E Sbjct: 240 GQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIVTNLE 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 Q AEE LD+ Y G +EI FN Y++DVLN + + VR+ T++ SS I + + Sbjct: 300 QGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEVRLTFTNASSSCLITPIDASDSK 359 Query: 359 YVVMPMRL 366 YVVMPMRL Sbjct: 360 YVVMPMRL 367 >UniRef50_Q602N1 DNA polymerase III, beta subunit n=1 Tax=Methylococcus capsulatus RepID=Q602N1_METCA Length = 366 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 168/367 (45%), Positives = 229/367 (62%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + RE LL PLQQV G + R TLPIL N+L++V G + L GTDLE+++VA + Sbjct: 1 MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDM- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G TVPARK DICR LPEG E+A ++ ER+ ++ G+SRF L LPA ++PN + Sbjct: 60 EGKESGRFTVPARKLMDICRLLPEGGELAFDVKPERVSLQCGKSRFILGALPAENYPNFE 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E F ++R IE T F+MA QDVRYYLNG+L E +R VA+DGHRLA+ Sbjct: 120 HGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQGRIRAVASDGHRLALF 179 Query: 181 SMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + +I+PRKGV+EL R+L + V+I +NN+R G F F KLV+G Sbjct: 180 EDAVDGMPDVARQIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFAVKLVEG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 R+PDY RV+PK + + L+ A R A+LSNEKF+GV L + E +++ A NPE Sbjct: 240 RYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLRAQNPEH 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAE+ + SG +GFN SY+LD +NA+ + VRM TD+ S IED + + Sbjct: 300 EEAEDEVPADVSGEAFAVGFNASYLLDAINAVASDAVRMSFTDANGSCLIEDLSDSRYRF 359 Query: 360 VVMPMRL 366 +VMPMRL Sbjct: 360 IVMPMRL 366 >UniRef50_B0RLI9 DNA polymerase III beta chain n=34 Tax=Gammaproteobacteria RepID=B0RLI9_XANCB Length = 366 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 185/367 (50%), Positives = 266/367 (72%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT++RE LKPL QV + R TLP+L NLL+QV +G LSLTGTDLE+EM++R +V Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISR-TMV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G TT+PARK FDI R LP+G+ + V G+++ V++GRSRF+L+TLPA DFP++D Sbjct: 60 EDAQDGETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFPSVD 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + ++ +P+A +K L+E T F+MA QDVRYYLNG+LF+ LR VATDGHRLA+C Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179 Query: 181 SMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + +S + +IVPRKGV EL+R+L+ D + +++G ++IR GD FTSKL+DG Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDY V+P D+ ++ + L+ + RAAILSNEK+RGVR+ VS QLKI+A+NPEQ Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAHNPEQ 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEA+E ++ ++ IGFNV+Y+LD L+AL+ E+V + L D+ SS + +A+S+ + + Sbjct: 300 EEAQEEIEADTKVDDLAIGFNVNYLLDALSALRDEHVVIQLRDANSSALVREASSEKSRH 359 Query: 360 VVMPMRL 366 VVMP+RL Sbjct: 360 VVMPLRL 366 >UniRef50_A5D6E5 DNA polymerase sliding clamp subunit n=2 Tax=Peptococcaceae RepID=A5D6E5_PELTS Length = 369 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 109/369 (29%), Positives = 183/369 (49%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +RE+L LQ V + + LPIL + + D L LT TDLEM + + Sbjct: 1 MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSIT-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + +PGA +PAR ++ R LP+ I + + +R S S++ A ++P Sbjct: 60 EVLQPGAAVLPARYITELIRKLPDQPFLIESDQDTGHVTIRYASSEASMNCFQADEYPEF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + ++EFT+P T++ +I F++ + R G+LFE +++ VATD HRLA Sbjct: 120 PVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREGQVQVVATDTHRLAW 179 Query: 180 CSMPIGQ--SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + S ++I+P + + EL R+ G D ++V + + VG+ ++L+ Sbjct: 180 RKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLITRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G FP+YR+V+P+ + A L +A RA++LS + VRL N + +TAN+ Sbjct: 240 GGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTANS- 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E E L V G ++I FN Y+ DVL + E + + T +S I S Sbjct: 299 EVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGSEEIDIEFTGPLSPGVIRPVGSTDY 358 Query: 358 AYVVMPMRL 366 +++P+RL Sbjct: 359 LSLLLPVRL 367 >UniRef50_A7H676 DNA polymerase III, beta subunit n=6 Tax=Cystobacterineae RepID=A7H676_ANADF Length = 376 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 198/376 (52%), Gaps = 10/376 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 M+ + L K L + G + + T+PIL ++LL+ G L ++ TDL++ + + Sbjct: 1 MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + GA V AR ++I R LPE + + VRSG S F + LPA DFP L Sbjct: 61 CEVLKEGALAVSARHLYEIVRALPEQQVTLKRAHNNYLEVRSGPSEFRIVGLPAEDFPAL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + +IE T F++++ + RY LNG+ FE E LR VATDGHRL++ Sbjct: 121 PRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRLVATDGHRLSL 180 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLDG------GDNPLRVQIGSNNIRAHVGDFIF 232 IG + VI+P+KG+ EL ++L ++ N+ I Sbjct: 181 SERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRRPGVIL 240 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 + +L++G FPDYR+V+PK +K L G D + R ++LS++K V+L + + LK+ Sbjct: 241 SMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQGTLKV 300 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE-- 350 + NP+ EA+E + V Y+G ++IGFN Y++DVL +K V++ L D +S + Sbjct: 301 LSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKSAEVQLELADDLSPGVMRGG 360 Query: 351 DAASQSAAYVVMPMRL 366 D VVMPMR+ Sbjct: 361 DEKDAGFTAVVMPMRI 376 >UniRef50_Q31JS4 DNA polymerase III, beta subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JS4_THICR Length = 368 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 164/368 (44%), Positives = 240/368 (65%), Gaps = 2/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ RE+LLK LQ V G + R T+PIL N+L QV TL++T +DLE+E A L Sbjct: 1 MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + T+PA K I R LP+G I ++ + R + +GRSRF LSTLPA DFP +D Sbjct: 61 SSDGDFSVTLPAVKLISIVRSLPDGLTILLEFDEMRCQLSAGRSRFKLSTLPADDFPTID 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 Q+E+ F++ Q +K++I T F+MA QDVR+YLNGMLF+ + LR VATDGHRL+ C Sbjct: 121 LTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRVVATDGHRLSTC 180 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S + + L + I+PRKGV+EL +++ D+ + + N + + +FT KLVDG Sbjct: 181 STLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTCKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPD+ RVLP++ D+ ++ +LL+ RAAILSN+KF+G+RL +S+N L + A N +Q Sbjct: 241 RFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHAQNSDQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ-SAA 358 +E+ E + + Y+G EMEIGFNV+Y+LDVLN++ E V + + D+ SS ++ Sbjct: 301 DESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMHEEAVTLYMKDANSSCMVDTQNETCHCQ 360 Query: 359 YVVMPMRL 366 +V+MPMRL Sbjct: 361 HVIMPMRL 368 >UniRef50_Q1LTW3 DNA polymerase III, beta subunit n=47 Tax=Bacteria RepID=Q1LTW3_BAUCH Length = 370 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 220/370 (59%), Positives = 284/370 (76%), Gaps = 4/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ER++LLKPLQQVS L GR LPIL +LLLQV + L LTGT+LE+E+VA++ + Sbjct: 1 MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G V ARK FDICR LPE A I + LEG MLV +GRSRFSL TLPA +FP + Sbjct: 61 KVDKIGIIMVCARKLFDICRSLPEDALINITLEGTVMLVIAGRSRFSLMTLPATNFPKIA 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D ++++ F LP T+K++I++TQFSMAHQDVRY LNG+LFE G+ELRTVATDGHRLA C Sbjct: 121 DGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELRTVATDGHRLAAC 180 Query: 181 SMPIG--QSLPSHSVIVPRKGVIELMRM--LDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 ++ I + LP S+IVPRKGVIEL+R+ LD GDN +++QI SNNIR ++ ++IFTS L Sbjct: 181 TIYINVLKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNYIFTSNL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G FPDY VLPKN +K L+ DL+KQA R AILSN+KFR VRLY+ +NQLKITA N Sbjct: 241 IEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQLKITAKN 300 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 EQEEAEEILDV+Y G E+E+ FNV+Y+LD+L LKC+ VR++ + SSVQI+D + Sbjct: 301 LEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKCDTVRLLFNNEASSVQIDDCMNPM 360 Query: 357 AAYVVMPMRL 366 + Y+VMPMR+ Sbjct: 361 SIYIVMPMRM 370 >UniRef50_B8GXP6 DNA polymerase III subunit beta n=185 Tax=cellular organisms RepID=DPO3B_CAUCN Length = 372 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 138/373 (36%), Positives = 202/373 (54%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+ER LLK L V + R T+PIL N+LL LS + TDL+ME++ Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDE-GFA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL--EGERMLVRSGRSRFSLSTLPAADFPN 118 Q PG T PA ++I R LP+GA++++ + R+++++GRSRF+L LPA DFP Sbjct: 60 QIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPV 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE----ELRTVATDG 174 + + + RLI+ T+F+++ ++ RYYLNG+ T E +LR VATDG Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179 Query: 175 HRLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ MP + VIVPRK + E R+++ + +Q+ +R G T Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 SK++DG FPDY RV+P++ K L DL +A R A +S EK R V+L V ++ +T Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 N E +A E ++V Y G EIGFN Y+LDV + D S + D Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPV 359 Query: 354 SQSAAYVVMPMRL 366 YV+MP+R+ Sbjct: 360 DPGVKYVLMPLRV 372 >UniRef50_A4G155 DNA polymerase III, beta subunit n=14 Tax=Betaproteobacteria RepID=A4G155_HERAR Length = 368 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 158/368 (42%), Positives = 234/368 (63%), Gaps = 2/368 (0%) Query: 1 MKF-TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 M+ +R+ LL+PLQ VSG + R TLPIL N+L++ +S TD+E+++ + Sbjct: 1 MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 +E +TTV ARK DI R LP+ ++++ L +RM V+SG+SRF+L TL A +FP + Sbjct: 61 GSGNEIASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTV 120 Query: 120 DDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + TLPQ T+K L FSMA QD+RYYLNG+L +G+ + VATDGHRLA Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLA 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + Q VI+PRK +IEL R+L+ D P+ ++I ++ ++ GD SKLV+ Sbjct: 181 FCQVATEQEFARQEVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKLVE 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+PK + G D L ++ RAAI++++KF+GVR +S +KI++ N + Sbjct: 241 GKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNAD 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEEA E +++ Y G ++IGFNV+Y+LDVLN LK +N+ + L D+ SS I + Sbjct: 301 QEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKGDNINIALGDANSSALITVPDNPDFK 360 Query: 359 YVVMPMRL 366 YVVMPMR+ Sbjct: 361 YVVMPMRI 368 >UniRef50_A0L3I8 DNA polymerase III, beta subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3I8_MAGSM Length = 376 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 138/377 (36%), Positives = 211/377 (55%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V RE LK LQ++ + R T+P LGN LL+ + L+LT TDLE+ M + Sbjct: 1 MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + GA V ARK F+I R LP+ + GER+++ GR+RF+L + A FP Sbjct: 60 EVESSGAIAVSARKLFEIVRELPQDSLRLRSEAGERLVLTCGRARFTLVGIRADIFPPFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET----------EGEELRTV 170 + FTL + +I T F+M+ + RY LNG+L E +R V Sbjct: 120 ETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVRIV 179 Query: 171 ATDGHRLAVCSMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 ATD HRLA+ M + S +I+PRKGV E+ ++++ D + + + N IR Sbjct: 180 ATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSKPG 239 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 + TSKLV GRFP+Y+RV+P + LE + L R +LS+EK RG+R+ +S + Sbjct: 240 IVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSSDH 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 +K++A NPEQE AEE + +++G +M +GFN Y+ ++++ + VRM L D S V + Sbjct: 300 IKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANGDTVRMKLRDEESPVLV 359 Query: 350 EDAASQSAAYVVMPMRL 366 E+ ++ YV+MPMR+ Sbjct: 360 EEHSATGYLYVLMPMRV 376 >UniRef50_Q1GXK0 DNA polymerase III, beta subunit n=2 Tax=Methylophilales RepID=Q1GXK0_METFK Length = 367 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 225/368 (61%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + R+ LLKPL VS + R TLPIL NLLL+ + LT TDLEM++ V Sbjct: 1 MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E +TT+ A+K DICR LPE AEI + + R+ V++G+SRF+L TLPA D+P + Sbjct: 61 AGGEL-STTISAKKLLDICRSLPENAEITMATQDSRIQVKTGKSRFNLQTLPAGDYPLMT 119 Query: 121 DWQSEVE--FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + Q ++KRL + +F+MA QD+RYYLNG+LFE G L V TDGHRL+ Sbjct: 120 KTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGNRLNVVGTDGHRLS 179 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S + S +I+PRK VIEL+++LD ++ + +++ + GD SK++D Sbjct: 180 FTSTELASSYEKQEIILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLISKVID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+P ++ + RA+ILSNEK+RG+R+ +S N LK+ + N E Sbjct: 240 GKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLISTNSE 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEEAEE L+++Y G+ ++IGFNV+Y++DVLN E+V D+ SS + + Sbjct: 300 QEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDSESVTFSFADANSSCLVTVENDDNYK 359 Query: 359 YVVMPMRL 366 YVVMPMR+ Sbjct: 360 YVVMPMRI 367 >UniRef50_Q0EVY9 DNA polymerase III subunit beta n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EVY9_9PROT Length = 366 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 202/367 (55%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+ R LL+ +Q+ + R T+PIL N+L++ +++T TDLE+ + + + Sbjct: 1 MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHIDG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV A+K F+I R L ++++ + + SG SRF ++T PA ++P + Sbjct: 60 SVEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGFISIVSGSSRFRVNTRPADEYPAMA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG-EELRTVATDGHRLAV 179 + + ++ LP + +I AT F+M+ + R YL G LFE + + LR V TDGHRLA+ Sbjct: 120 EQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFELDDSQNLRLVTTDGHRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + Q+ + S IVP+K VIE+ ++ + + + I IR G TSKL+D Sbjct: 180 SEIRLQQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTSKLIDA 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFP Y+ V+P N Q R I++NE +RL S+ L I+A+N EQ Sbjct: 240 RFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISAHNSEQ 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EE+EE L Y G E+ IGFN Y+ D L A++ +V M L D +S V I + + Y Sbjct: 300 EESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRAPSVCMELKDELSPVLIRGEDDEQSRY 359 Query: 360 VVMPMRL 366 V+MPMR+ Sbjct: 360 VIMPMRI 366 >UniRef50_Q6MRS0 DNA polymerase III, beta subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRS0_BDEBA Length = 368 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 4/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +++ LL + + + R T+PIL N+LL+ TL + TDLE+ + ++ V Sbjct: 1 MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIK-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q H+ G V A+ FDI + L EG ++ E + ++ G+ + + A ++P Sbjct: 60 QVHQAGKVAVSAKSLFDIAKELSEGPITLIKKENNWLEIKQGKYTSKIVGISAEEYPIFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRLAV 179 + S+ + +K +I+ T +S++ + RY+LNG+ FE + + VATDGHR+++ Sbjct: 120 TYNSQAFIKIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQTGFKMVATDGHRMSL 179 Query: 180 CSMPIGQS--LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + P + VI+PRKG+ E+ ++L+ D + + + + I +L+ Sbjct: 180 VNKPSEDIKVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKHSSTILMIRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G++P+Y++ +P+ + + D + R ++L+N+K + V L +S +++I++NNP Sbjct: 240 EGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGRMEISSNNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E +A+E ++V Y G E++IGFN Y+ D+L ++ + + L D +S + Q+ Sbjct: 300 ELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQDKIDFELNDHLSPGLMRPHNDQTY 359 Query: 358 AYVVMPMRL 366 VVMPMR+ Sbjct: 360 TCVVMPMRI 368 >UniRef50_C1A3G7 DNA polymerase III beta subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3G7_GEMAT Length = 370 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 199/370 (53%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ RE L + LQ V+ + + TLP+L NLL++ D + + TDL++ + V+ Sbjct: 1 MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 PGA T+PA+K +I R LP +R+ + GRS+F L LP +FP Sbjct: 60 DVETPGAITIPAKKLGEIARELPPSPVKISASGEQRVTLECGRSKFKLLGLPRDEFPTFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + +++LI T F++++++ R LNG+L+E E +R VAT+GHRLA Sbjct: 120 SVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREERMRMVATNGHRLAKM 179 Query: 181 SMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 +P+ S P +IVP K + ++ R+ + L + G N++ ++LV+G Sbjct: 180 ELPVEASSAPPGDLIVPPKALEQIRRLFPA-EEELEIARGDNHLGFRSPFTSVFTRLVEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+Y +V+PK+ D++ A L A R +++++++ +++ + LK + P+ Sbjct: 239 PYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKFSVTTPDL 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS--- 356 EA + L + Y+G +++IGFN +Y+L++L + E VR+ + IE Sbjct: 299 GEASDELPINYTGDQLDIGFNATYLLEILRFMPTEQVRLTFKAPERAATIEPEGWDDPAK 358 Query: 357 AAYVVMPMRL 366 +VMP+RL Sbjct: 359 YLCLVMPLRL 368 >UniRef50_B9XEB7 DNA polymerase III, beta subunit n=3 Tax=Verrucomicrobia RepID=B9XEB7_9BACT Length = 369 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 194/372 (52%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T+ +E L+ LQ V + R TLPIL N+L++ L T TDL++ + V Sbjct: 1 MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GATTVP +K F I R L E +RSG S + ++ L A +FP L Sbjct: 61 -VKEGGATTVPVKKLFGIVRELNNPEIEIEVDEKNTCSIRSGSSFYKINGLSADEFPPLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + TLPQ +K +++ T F+++ + RY LNG+ + +L VATDG RLA+ Sbjct: 120 KFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEHKLTMVATDGRRLALV 179 Query: 181 SMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD-----FIFTS 234 + + S IVP K V EL R+L + ++ N + D + S Sbjct: 180 DEEVDVTEKSQGEFIVPAKAVNELNRLLTD-KGEVEIRYSENQAAFTLKDEKGFSILIIS 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 KL++G +P+YR+V+P + + + A RA I+++EK V+L S+N L ITA Sbjct: 239 KLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNNLAITA 298 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N+PE EA E L + Y G EM I FN YV+D LNAL + + + L D +S ++ Sbjct: 299 NSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALSNDEIFLELIDELSPGVVKINGP 358 Query: 355 QSAAYVVMPMRL 366 YVVMPMRL Sbjct: 359 --FLYVVMPMRL 368 >UniRef50_D1CG53 DNA polymerase III, beta subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG53_THET1 Length = 376 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 112/374 (29%), Positives = 173/374 (46%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E+L + L VS + R TLPILGN+LL G L L T+LE+ + V Sbjct: 1 MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWV-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TTVPAR F + LP + EG ++ V +G S + + DFP + Sbjct: 60 DIEREGVTTVPARLFTEFISSLPNEKVLLELNEGHKLHVAAGHSAADIHGMDPEDFPTVP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E + +K +IE F+ A D R L G+LF+ +G++L A DG RL+V Sbjct: 120 SASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGDKLTLAAADGFRLSVK 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFTSKLVD 238 I S S +VIVP K + L R++ + + + I N I + S+L+D Sbjct: 180 EQSINSSAESVNVIVPAKALDALSRLIGDHEEQVEITINPNKSQIVFQAENINVISRLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE------NQLKI 292 G FP+Y +++PK ++A RA I + V+L +S ++ + Sbjct: 240 GNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDTGKIVV 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A E + L+ T G +I FN Y+ DVL+ ++ + V + S I Sbjct: 300 SATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIESDQVALETQSPNSPGVIRPV 359 Query: 353 ASQSAAYVVMPMRL 366 + S +V+MPM L Sbjct: 360 GNGSYTHVIMPMHL 373 >UniRef50_Q02D48 DNA polymerase III, beta subunit n=2 Tax=Acidobacteria RepID=Q02D48_SOLUE Length = 372 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 197/374 (52%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV + L++ L G + + T+PIL N+LL+ AD ++LT TDLE+ + Sbjct: 1 MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G+ TVPARK D R LPEG L+ + SGRSR ++ + FP L Sbjct: 60 RVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGRSRTRIAGMSRESFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + +P T+ +I T F+++ ++ R+ LNG L E L VATDGHRLA Sbjct: 120 QMPEPIA-QVPVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTMVATDGHRLAYV 178 Query: 181 SMPIGQS---LPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGS-NNIRAHVGDFIFTSK 235 +S +VP+K + EL ++ D G+ + + G N++ +G + ++ Sbjct: 179 QAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRLLITR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 + G FPDY RVLPK+ + ++ A R A ++E+ R +R+ + ++++ ++ Sbjct: 239 KLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQFADERSRAIRVQFNSGEVRVFSS 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS- 354 + E E+EE + Y+G ++EIGFN Y+LD L A+ ++V L D S+ ++ A Sbjct: 299 SVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAISQDHVAFELKDQKSAGELRPAGDA 358 Query: 355 --QSAAYVVMPMRL 366 YVVMPMR+ Sbjct: 359 IADQYRYVVMPMRI 372 >UniRef50_A6TJ77 DNA polymerase III, beta subunit n=3 Tax=Clostridiaceae RepID=A6TJ77_ALKMQ Length = 368 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 186/368 (50%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F+ ++ L+ + V + + TLPIL + ++ + L L GTDLE+ + V Sbjct: 1 MHFSCSQKALMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEH-VMEA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G V AR F +I R LP+ E ++ ++ + F++ +FP L Sbjct: 60 DVLQEGIVVVDARLFSEIIRKLPDAEVDITLKENNQLEIKCASTEFNILVYSPDEFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + + Q K +I T F+ + + R L G+L E E L VA DG+RLA+ Sbjct: 120 IVEEDQVYEIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEENTLNMVALDGYRLALR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I +H V+VP K + E+ R+L+ + PL + + +N+ G S+L++G Sbjct: 180 KGKI-SGNSNHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLISRLLEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPE 298 F +Y+++LPK + + + RA++L+ E + VR V++ ++ IT+N+ E Sbjct: 239 EFINYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVITSNS-E 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + E +++ G ++EI FN Y +D L + E V + T ++S ++ A+++ Sbjct: 298 LGKVHEEINIVLEGEDIEIAFNSKYFIDALKVIDDEEVCLEFTTNLSPGILKPLANENYT 357 Query: 359 YVVMPMRL 366 Y+V+P+RL Sbjct: 358 YLVLPVRL 365 >UniRef50_C5V0W8 DNA polymerase III, beta subunit n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0W8_9PROT Length = 368 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 144/365 (39%), Positives = 221/365 (60%), Gaps = 3/365 (0%) Query: 4 TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQP 62 +E+E LLKPLQ V G + + T+PIL N+L++ G + T TDLE+++ + Sbjct: 5 KIEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADH 64 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL-DD 121 A TV +K +I R LP+ ++++++++ + ++S +S+F+L +LPA DFP L + Sbjct: 65 ESNAAITVGGKKLQEILRILPDQSKVSIEVKENKAQIKSNKSKFNLQSLPAQDFPTLSNQ 124 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + +L Q +K L + QF+MA QDVRYYLNG+LF E R VATDGHRLA + Sbjct: 125 LADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVIEDNIFRAVATDGHRLAYNA 184 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRF 241 + I S +I+PRK ++EL ++L D + ++ S ++A T+KL++G+F Sbjct: 185 IAIESSSEKIEIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTKLIEGKF 244 Query: 242 PDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEE 301 PDY+RV+P N HL L++QA RAAILSNEKFRGVR ++E L I ++N EQEE Sbjct: 245 PDYQRVIP-NYTNHLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISSNSEQEE 303 Query: 302 AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVV 361 A+ ++ Y G ++IGFNV+Y++D L+++ E + SS+ I YVV Sbjct: 304 AQVEIETDYHGEAIDIGFNVNYLMDGLSSVHSEMAIFSFGNPNSSILITSPDDLEFRYVV 363 Query: 362 MPMRL 366 MPMR+ Sbjct: 364 MPMRI 368 >UniRef50_Q7NGD9 DNA polymerase III beta subunit n=1 Tax=Gloeobacter violaceus RepID=Q7NGD9_GLOVI Length = 376 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 96/374 (25%), Positives = 176/374 (47%), Gaps = 8/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD--GTLSLTGTDLEMEMVARVA 58 MK + L + L V + RPT PIL N+LL+ GT++LTG DL++ + R A Sbjct: 1 MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 Q G TT+PAR DI LP + E + + G S++ + A +FP Sbjct: 61 AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSEDNAISLVCGSSQYQVQGASAEEFPK 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L + LP + ++ + F+ + + + LNG+ + E + VATD HRL+ Sbjct: 121 LPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEFVATDAHRLS 180 Query: 179 VCSMPI---GQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTS 234 + + ++P + V EL ++L + + V+ + + T+ Sbjct: 181 FYRTDFTLPEAGTQAIAAVLPVRSVRELEKILGAQAGDSVEVRFDEKQMIFQFPNQTLTT 240 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ--LKI 292 +L+ GR+PDY+++LPK + + L R A+L+++K V+L + ++ + + Sbjct: 241 RLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSEHLMTV 300 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + P+ E + V YSG + + FNV Y+L+ L A+ +V L + ++ Sbjct: 301 SVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATDVSFCLNGASDPAVLKPV 360 Query: 353 ASQSAAYVVMPMRL 366 + Y++MP+ + Sbjct: 361 GDGNYQYLIMPVSI 374 >UniRef50_B2UQB4 DNA polymerase III, beta subunit n=2 Tax=Verrucomicrobiaceae RepID=B2UQB4_AKKM8 Length = 366 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 186/367 (50%), Gaps = 6/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ ++ L L+QV+ + + TLPIL N+ ++ +G + T TDL++ + V Sbjct: 1 MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G T+PA+K I LPE + + V GRS+F L+ LPA +FP L Sbjct: 60 NVLREGTVTLPAKKLVSIISELPEAEVQVDVNQRNQAAVECGRSQFKLNGLPADEFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + Q ++ I T+++++ RY LNG+ ++ VATDG RLA+ Sbjct: 120 SFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGISLSFRNGKMTLVATDGRRLALA 179 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + I+P K V EL R+LD + ++ N + D + SKL+DG Sbjct: 180 ETALEFPEEQQLDAILPTKAVGELRRLLDEV-GTVTIRFTRNQAAFEINDTLLISKLIDG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+YR+V+P + + +E C L + R ++LS +K ++L EN+L++ ++ Sbjct: 239 NYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVASSAEGV 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV-RMMLTDSVSSVQIEDAASQSAA 358 EA E + +TYSG + I FN + + L + + V + L D +S ++ Sbjct: 299 GEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTVITLNLIDEMSPGVLK--IGDEFL 356 Query: 359 YVVMPMR 365 YV+MPMR Sbjct: 357 YVLMPMR 363 >UniRef50_A1AJX3 DNA polymerase III, beta subunit n=10 Tax=Desulfuromonadales RepID=A1AJX3_PELPD Length = 373 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 208/374 (55%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F +++E LK LQ++ G + R ++PIL N+LL+ + +L +T TDLE+ M Sbjct: 1 MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGMKCIYP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + PG TV A+K ++I + LP + + + +R G+ F++ L A +FP Sbjct: 60 EILSPGRITVGAKKIYEIVKELPNQQISFSAKDNDWVEIRCGKVHFNIVGLSAEEFPYFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-----LRTVATDGH 175 + E F + A +K +IE T +++ + D +Y LNG+ +TE + L+ VATDGH Sbjct: 120 EVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVATDGH 179 Query: 176 RLAVCSMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 RL++ S P + S VI+P+KGV EL ++ + L N+ GD Sbjct: 180 RLSIASCPFKGNAGQELSKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRGDSYM 239 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 +LVDG FPDY RV+P + D+ + CD + R AILS+EKF+G+ L +SE+ ++I Sbjct: 240 VMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISESSIRI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +++NPE +A E +DV+Y G + FN Y+LDVL + E+V M D ++ I Sbjct: 300 SSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTETESVEMKFKDELAPSIILPD 359 Query: 353 ASQSAAYVVMPMRL 366 S S V+MPMRL Sbjct: 360 KSDSFLAVIMPMRL 373 >UniRef50_C9KQB1 DNA polymerase III, beta subunit n=2 Tax=Veillonellaceae RepID=C9KQB1_9FIRM Length = 370 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 188/368 (51%), Gaps = 4/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T + L LQ V+ + +P PIL + L+ TL L T+ E+ +VAR+ Sbjct: 1 MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG TV R F ++ R LP E ++A + + + + S ++F+L ++ AA+FP + Sbjct: 60 DIEEPGELTVGGRYFQEVVRKLPGENVKLACTADEKIVHIESAMAKFTLLSMNAAEFPTI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + ++F + ++ LI+ T F+ + + R G E ++ AT+ HRL+V Sbjct: 120 QPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTENKVTMAATNTHRLSV 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S QS+ + VI+P + + EL+ + +++ N I + TS+L++ Sbjct: 180 KSETFDQSIGNIKVIIPSRILQELLHNMSSDIPTDVKISCSYNQISFSFDNLYMTSRLIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNP 297 G+FP+YR V+P + H++ A R ++++ + ++L ++NQ+ IT+NNP Sbjct: 240 GQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHITSNNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E AEE + G ++ I FN Y++DVL + + R+ L +S I++ S Sbjct: 300 EIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDSKTCRIGLNQPLSPASIQEEDDDSF 359 Query: 358 AYVVMPMR 365 Y+V P+R Sbjct: 360 VYIVTPVR 367 >UniRef50_B1ZXL9 DNA polymerase III, beta subunit n=2 Tax=Opitutaceae RepID=B1ZXL9_OPITP Length = 374 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 118/377 (31%), Positives = 199/377 (52%), Gaps = 15/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+H L QV +G + T+PIL N+L++ +SLT T+L++ + ++ Sbjct: 1 MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E GA T+P ++ I R LP ++ + SG S F + + +FP L Sbjct: 60 EVKETGAVTLPVKRLATIVRELPNVDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPPLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E FTL Q+ + ++++ ++ + + RY LNG+ F + +L VATDG RLA+ Sbjct: 120 EFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYFNFKDGKLSLVATDGRRLALV 179 Query: 181 SMPIGQSLPSHSVIV-PRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----------GD 229 S + S I+ P K V ELMR+LD G+ L++ + Sbjct: 180 SKELEVPADSAGAIILPAKTVSELMRLLDKGEK-LKINFNDRRAAFQIATDKDSSGLVES 238 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 SK+V+G +P+Y++V+PK + ++ +L Q RAA++ +EK V++ +S N Sbjct: 239 VYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIKLSSNL 298 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L+ITA +P+ EA E + + YSG E+++ FN ++V+D L AL + + L D VS Sbjct: 299 LEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRALTKDEIFFELKDDVSPGVF 358 Query: 350 EDAASQSAAYVVMPMRL 366 + S V+MP+RL Sbjct: 359 KTL--DSFLCVIMPVRL 373 >UniRef50_B1Y548 DNA polymerase III, beta subunit n=92 Tax=Betaproteobacteria RepID=B1Y548_LEPCP Length = 381 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 14/378 (3%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 +E +L LQ VSG + R TLPIL N+L++ + G LT +DLE+++ L Sbjct: 4 LKAAQEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGD 63 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 +TTV ARK DI R LP + + ++ ++ G+SRF+L TLPA DFP + + Sbjct: 64 ESAFSTTVGARKLIDILRMLPSDQIVTLTAAQNKLTLQGGKSRFTLQTLPADDFPLVQEA 123 Query: 123 -QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 F++PQ T+K LI+ F+MA D+RYYLNG+LF EG+ L VATDGHRLA+ Sbjct: 124 ADFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTLVATDGHRLALAQ 183 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGG-------------DNPLRVQIGSNNIRAHVG 228 + +P VI+PRK V+EL R+L + + ++ N + G Sbjct: 184 ATLEAEIPKQEVILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQAKFSFG 243 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN 288 F +KLV+G+FPDY RV+P+N H+ G L + RAAIL++EKF+GVR+ Sbjct: 244 GMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRVNFEPG 303 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 L+I ++N EQEEA+E L++ Y G +EIGFNV+Y++DVL + + V + L D+ SS Sbjct: 304 TLRIASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANVNEDMVTLSLQDASSSAL 363 Query: 349 IEDAASQSAAYVVMPMRL 366 I YVVMPMR+ Sbjct: 364 ITVPERSGFKYVVMPMRI 381 >UniRef50_Q252K1 DNA polymerase III beta chain n=2 Tax=Desulfitobacterium hafniense RepID=Q252K1_DESHY Length = 385 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 174/368 (47%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L+ + V + + TLP+L ++++ +L TDLE+ + V Sbjct: 19 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVP-A 77 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q + G +P+R F D+ R LP+ I ++L+ + + + S SL +FP L Sbjct: 78 QVEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDVINIHYNESDLSLRGYDPEEFPLLP 136 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D F LP + K +I+ T F+ + ++ R G L + E LR +ATD HRLA Sbjct: 137 DLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRLIATDTHRLAYR 196 Query: 181 SMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I I+P K + E+ R+L D L ++ I G S+L++G Sbjct: 197 IAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSRLIEG 256 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG--VRLYVSENQLKITANNP 297 +FP+Y++V+P++ + L + + RA++L+ + ++L V +L I Sbjct: 257 QFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSID-QTS 315 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E + E ++V G +++I FN ++LDVL + E + L+ S S I + Sbjct: 316 ELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDSEEIVFELSGSYSPGIIRPVDDPNY 375 Query: 358 AYVVMPMR 365 Y+ +P+R Sbjct: 376 LYLALPVR 383 >UniRef50_Q5HK00 DNA polymerase III subunit beta n=240 Tax=Bacilli RepID=DPO3B_STAEQ Length = 377 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 181/374 (48%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M+FT++R++ + L + R TLPIL + + + + LTG+D E+ + + Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61 Query: 59 -----LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 +V+ E G+ +P R F DI + LP E + L+ SG S F+LS L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNEQFQTLITSGHSEFNLSGLDP 121 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +P L + + L +K +I T F+++ + R L G+ + + EL ATD Sbjct: 122 DQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTATD 181 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLAV + + + +VI+P K + EL +++ D + + SN + VG+ F Sbjct: 182 SHRLAVRKLQLEDESENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRVGNINFI 241 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKI 292 S+L++G +PD R+ P+N + L A RA++L+ E ++L +++ Sbjct: 242 SRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTGNELVEL 301 Query: 293 TANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++ +PE +E ++ G ++I FN Y++D L A+ + V + ++ ++ Sbjct: 302 SSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKP 361 Query: 352 AASQSAAYVVMPMR 365 S +++P+R Sbjct: 362 KDDDSVTQLILPIR 375 >UniRef50_A3M0Q5 DNA polymerase III n=16 Tax=Acinetobacter RepID=A3M0Q5_ACIBT Length = 382 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 168/382 (43%), Positives = 229/382 (59%), Gaps = 16/382 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA AL Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 Q--PHEPGATTVPARKFFDICRGLPEGAEIAVQ-LEGERMLVRSGRSRFSLSTLPAADFP 117 + E G TTVPARK +IC+ LP A I +Q E +R +++SG SRF L TLPA D+P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120 Query: 118 NLD-DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 L + + + Q +KRL E T F+MA QDVR+YL G L E + +LR V TDGHR Sbjct: 121 LLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHR 180 Query: 177 LAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD------ 229 LA+C + + IVPRK V EL R+L D L + IG + + Sbjct: 181 LALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKE 240 Query: 230 -----FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 FT+KL+DG+FPDYRRV+P+ DKH+ G D+ KQ+ R AILSNEK RGV L Sbjct: 241 QGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLN 300 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344 +++ L++ ANNPEQ+EA E L + Y A +E+ FN Y+LDVL L ++V M +T++ Sbjct: 301 FNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDGDDVNMSMTEAN 360 Query: 345 SSVQIEDAASQSAAYVVMPMRL 366 SV ++D A YVVMPMR+ Sbjct: 361 QSVLVQDPAHPDQTYVVMPMRV 382 >UniRef50_P52023 DNA polymerase III subunit beta n=13 Tax=cellular organisms RepID=DPO3B_SYNE7 Length = 375 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 177/374 (47%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVA 58 MK + L L VS + RP P+L N+LL GT LSLT DL + + A Sbjct: 1 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 Q GA T+PA+ DI LP +++ ++ + G ++ + + A +FP Sbjct: 61 -AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAATLSVGSGQYQMRGISADEFPE 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L QS+ L + + + T F+ + + + L G+ + + + L ATDGHRLA Sbjct: 120 LPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAATDGHRLA 179 Query: 179 VCSMPIGQSLP--SHSVIVPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFIFTS 234 V + P +V VP + + +L RM+ G D + + GD TS Sbjct: 180 VVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQYLTS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV--SENQLKI 292 + +DG++P+Y +++P+ ++++ L A R A+L++++ +RL + N+L + Sbjct: 240 RTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENNRLAL 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + +E + G +EI FNV Y+ + L AL ++++ L + S V + Sbjct: 300 AVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTDIQIQLNSNTSPVVLSPL 359 Query: 353 ASQSAAYVVMPMRL 366 Y+VMP++L Sbjct: 360 GPVKITYLVMPIQL 373 >UniRef50_B9ZMT6 DNA polymerase III, beta subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMT6_9GAMM Length = 367 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 225/368 (61%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 M+ + +RE + LQ++ G R T+PILGN+ L+ + G + + TDLE+ A Sbjct: 1 MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQGEAAG 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 P E TV RK D+ + PE +EI ++GERM V SRFSL+TLP ADFP+ Sbjct: 61 TIPGEC-DVTVSVRKLLDVVKAAPEDSEIRATIDGERMSVGFAGSRFSLATLPGADFPDW 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + SE +PQ ++RL+EAT FSMA QDVRYYL G+L G LR VATDGHRLA+ Sbjct: 120 ESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLRAVATDGHRLAL 179 Query: 180 CSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + Q++ IVPRK + EL R L D P+RV + + +G+ + SK+++ Sbjct: 180 AEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDLGNAVLRSKVIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GRFPDY RV+P + L + LKQA AR +I++++K+RGVR+ + + ++ +N + Sbjct: 240 GRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGDEGCQVMTHNAD 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +EEA+E ++ Y G MEIGFN+ Y++DVLNA++ + VR+ L D SS+ ++ A Sbjct: 300 REEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIETDQVRIGLRDGNSSILVQAEPPGGAR 359 Query: 359 YVVMPMRL 366 YVVMPMRL Sbjct: 360 YVVMPMRL 367 >UniRef50_B1L1K7 DNA polymerase III, beta subunit n=35 Tax=Clostridium RepID=B1L1K7_CLOBM Length = 367 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 190/367 (51%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T ++ LL+ + V + G+ TLPIL +L++ L LTG+D+++ + +V Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G + AR F +I R LP LE + + SRF+L + +FPN Sbjct: 60 NILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNSIEIICQNSRFNLIYMNPDEFPNPP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + F++ + +K +I+ T F+ A + R L G+LF+ + + L VA DG+RLA+ Sbjct: 120 IINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNLVALDGYRLALR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S + + + ++P K + E+ ++L+ + + + N+I +G+ S+L++G Sbjct: 180 SEVVDNDN-TINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISRLLEGE 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF-RGVRLYVSENQLKITANNPEQ 299 F Y+ ++P+ + + A L + RA++++ E V+ S +++ IT+N+ Sbjct: 239 FISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITSNSQ-L 297 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E L V G +++I FN Y+LDVL ++ + V + + SVS I++ + Y Sbjct: 298 GMVREELKVVLQGEDLQIAFNSKYLLDVLKTMEDDEVVLEFSSSVSPCIIKNTELNNCTY 357 Query: 360 VVMPMRL 366 +V+P+RL Sbjct: 358 LVLPVRL 364 >UniRef50_D0LFL0 DNA polymerase III, beta subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL0_HALO1 Length = 365 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 111/368 (30%), Positives = 192/368 (52%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-LSLTGTDLEMEMVARVAL 59 M+F +++ LK L+ + T+P+L N+LL+ + L + TDL + + A + Sbjct: 1 MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G TV A+ FDI +PE + + + + G+ ++ L +P DFP + Sbjct: 61 KNSAE-GGLTVGAKALFDIVANMPEDDVVLRRTDNNWAEISCGKVKYRLVGMPDRDFPKV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + M+ +I+ T FS+ + + R++LNG+LFE++G R V+TDGHRL+ Sbjct: 120 PEHSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARMVSTDGHRLSK 179 Query: 180 CSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + G + +I+P+KG+ E+ ++L+ G V + + I H I KL++ Sbjct: 180 VERTLEGAPALTAGIIIPKKGIGEIKKLLESG-GKAAVAVKTPYIFVHADSMILAVKLIE 238 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 +FP Y +V+PK + + L A RA ++S+E RGV+ VS + L IT++NP+ Sbjct: 239 SQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSSE-TRGVKFNVSPDSLVITSDNPD 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E E L+ Y G E+ IGFN YV+D+L+ + + V + L + + + + Sbjct: 298 IGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMATDQVTLELNGELDPGLLRPFSDDNYL 357 Query: 359 YVVMPMRL 366 VVMPMR+ Sbjct: 358 GVVMPMRI 365 >UniRef50_B5JPS7 DNA polymerase III, beta subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPS7_9BACT Length = 380 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 117/383 (30%), Positives = 205/383 (53%), Gaps = 21/383 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+H LQQV +G + T+PIL N+L++ T+SLT T+L++ + AR+ Sbjct: 1 MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA T+P ++ I + LP ++ + SG S F + + +FP L Sbjct: 60 TIEEEGAVTLPVKRLATIVKELPNSDVKVEASPSNQVKIASGGSNFKIMGISREEFPALP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET------EGEELRTVATDG 174 ++ + FT+ Q T+ +I++ ++ + + RY LNG+ F L VATDG Sbjct: 120 EFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVATDG 179 Query: 175 HRLAVCSMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV------ 227 RLA + S S+I+P K V EL+R+LD G+N L++ + + Sbjct: 180 RRLAKTDHEMEVGEGMSGSLILPAKTVSELVRLLDKGEN-LKIAFNDRRVAFQIHTKDDS 238 Query: 228 ----GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 GD SK+V+G +P+Y++V+PK + ++ +L Q+ RAA+++ +K V++ Sbjct: 239 DGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSNQVKI 298 Query: 284 YVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS 343 +S N ++++A++P+ E+ E L + YSG ++++ FN +++D L AL + + L D Sbjct: 299 QISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKALTKDELFFELKDE 358 Query: 344 VSSVQIEDAASQSAAYVVMPMRL 366 VS + +S V+MP+RL Sbjct: 359 VSPGVFKTL--ESFLCVIMPVRL 379 >UniRef50_A7C334 DNA polymerase III, beta chain n=1 Tax=Beggiatoa sp. PS RepID=A7C334_9GAMM Length = 375 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 153/376 (40%), Positives = 228/376 (60%), Gaps = 11/376 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F + R+ LL PL+ ++G + R TLPIL N L+ V D TL T TD E+E+ + L Sbjct: 1 MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60 Query: 61 Q----PHEPGATTVPARKFFDICRGLPEG----AEIAVQLEGERMLVRSGRSRFSLSTLP 112 G TT+PARKFFDICR L + +++++ E + +V++G+S+F L TLP Sbjct: 61 SDNLGTDHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDETSQAIVKAGKSKFKLQTLP 120 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A DFP + + EF++ Q +K L+ T F +A DVRYYL G+L E ++ + T Sbjct: 121 ADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEISDGKISLIGT 180 Query: 173 DGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHV-GDF 230 DGHR+AV + + VI+PRK V+EL ++L + + V N+I + Sbjct: 181 DGHRMAVAQHDF-EGEENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKLSDSL 239 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 I SKL+DG FPD+ V+P +P+K + A LKQA RA+ILSNEK++G+R ++EN L Sbjct: 240 IMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLTENLL 299 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 I+A N QEEAEEI++V Y+G E+E+GFN Y+LD +N + + V++ D SS I Sbjct: 300 TISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKTVQLAFVDQNSSCLIM 359 Query: 351 DAASQSAAYVVMPMRL 366 + ++ + ++VMPMRL Sbjct: 360 EEDNEDSKFIVMPMRL 375 >UniRef50_A3DHZ5 DNA polymerase III, beta subunit n=5 Tax=Clostridium RepID=A3DHZ5_CLOTH Length = 366 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 180/367 (49%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E L++ + V + + TL IL +LL+ D +TG DLE+ + + Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLID-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G+ + ++ F DI R LP+ + E +++ S F L +P+ FP+L Sbjct: 59 DILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKENNTVIIECDNSHFELRGMPSDSFPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E + Q ++ +I T F+++ + R L G L E G E+ V+ DG R+A+ Sbjct: 119 SIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITFVSIDGFRMALR 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + SV+VP K + E+ ++L D + + N I +G+ S+L++G Sbjct: 179 KNFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSRLLEGE 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNPEQ 299 + +Y+ ++P + + + L + RA+++ S+EK V+ + ++++ IT+ N E Sbjct: 239 YLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITS-NTEI 297 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + V +G+ ME+GFN Y ++ L + E V + SV I S AY Sbjct: 298 GAVREEIRVEVNGSNMEVGFNPRYFIEALRVIDDELVDIYFNSSVGPCTIRPLEGDSFAY 357 Query: 360 VVMPMRL 366 +++P+R+ Sbjct: 358 MILPVRI 364 >UniRef50_A5FYG4 DNA polymerase III, beta subunit n=2 Tax=cellular organisms RepID=A5FYG4_ACICJ Length = 374 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 131/376 (34%), Positives = 197/376 (52%), Gaps = 12/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +R LLK L V + R T+PIL N+LL V +G L++ TDLE+ ++ VA Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER--MLVRSGRSRFSLSTLPAADFPN 118 G+ T PA ++I R P+ AEI + G + +R+GR L LP +FP Sbjct: 60 TTMRDGSVTAPAATLYEIVRRQPDNAEIELDHPGGDAPLALRAGRYATKLVVLPTDEFPK 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE----LRTVATDG 174 LD + F +P ++ LI+ T+F+++ ++ RYYLNG+ E LR VATDG Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVPVLRAVATDG 179 Query: 175 HRLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA P+ + VIVPRK V E+ ++LD + + + I+ + T Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 SKL+DG +PDY +V+P DK L A AR + +++E+ + V+L V + L ++ Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299 Query: 294 ANNPEQEEAEEILD---VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 A +P+Q A E LD V Y +EIGF Y+ DV +K V D + + Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG-KVEFCFADGAAPTLVR 358 Query: 351 DAASQSAAYVVMPMRL 366 A +SA +V+MPMR+ Sbjct: 359 AAGDESAIFVLMPMRV 374 >UniRef50_B0TAK9 DNA polymerase iii, beta subunit n=2 Tax=Heliobacteriaceae RepID=B0TAK9_HELMI Length = 371 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 177/370 (47%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ R LL+ + VS + + T P+L + L+ D L L TD+E+ + + V Sbjct: 1 MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+T V AR F ++ R LPEG V + + VR S +L+T+ +FP L Sbjct: 60 RTKRTGSTVVNARIFNEMARRLPEGPITFCVNGDNPALKVRYHGSELTLNTMNPQEFPLL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + Q K++ F+ + + R + G+L++ + EE+R VATD HRLA+ Sbjct: 120 PAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRWVATDTHRLAL 179 Query: 180 CSMPIGQS--LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S + VI+ K + ++ R+L + PL++ + + +++ Sbjct: 180 LSGQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVILRII 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS--NEKFRGVRLYVSENQLKITAN 295 +G++P Y++V+P++ L L +A RA++ S E ++L N L I +N Sbjct: 240 EGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTIRSN 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +PE E + V G + I FN Y+ DVL L E VR+ L +++ + Sbjct: 300 SPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDTEQVRLDLFGTLAPGLLRPVGED 359 Query: 356 SAAYVVMPMR 365 Y+++P+R Sbjct: 360 HYLYLIVPVR 369 >UniRef50_B0CDM3 DNA polymerase III, beta subunit n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CDM3_ACAM1 Length = 372 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 172/372 (46%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L L +S + PT P+L N+LL L LT DL + + +A Sbjct: 1 MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA T+PAR DI LP +I V+ + + + + + L A +FP L Sbjct: 60 DVEETGALTLPARFLNDIVSRLPNC-DIEVETDDTAVTLTCDSGHYQMQGLVAEEFPGLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 LP ++AT F+ + + + L G+ T TDGHRLA+ Sbjct: 119 SLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGLHLNTSESGFEFATTDGHRLAIA 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----GDFIFTSKL 236 + P + ++ +P K + EL RML + + ++ +N + G + +L Sbjct: 179 NFPDLVTPEPMTMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTERLSCRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKITA 294 ++G++P Y +++PK ++ + LL + R A+L+ K +RL + E + ++A Sbjct: 239 LEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQNVALSA 298 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 PE EE L SG +++I FNV Y+ D L AL + V++ + + + + Sbjct: 299 EAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQEVQLQMNSATMPAVLSPLSG 358 Query: 355 QSAAYVVMPMRL 366 + Y++MP+++ Sbjct: 359 RQITYLIMPIQI 370 >UniRef50_P72856 DNA polymerase III subunit beta n=43 Tax=Cyanobacteria RepID=DPO3B_SYNY3 Length = 391 Score = 357 bits (916), Expect = 5e-97, Method: Composition-based stats. Identities = 103/390 (26%), Positives = 171/390 (43%), Gaps = 25/390 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVA 58 MK + L L VS + RPT P+LGN+LL+ L LT DL + + + Sbjct: 1 MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEG-----ERMLVRSGRSRFSLSTLP 112 + G T+PA+ DI LP+G + +G + S RF + L Sbjct: 61 -ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLD 119 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A DFP L + LP AT+ + F+ + + + L G+ + G+ L AT Sbjct: 120 ADDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGVHIKGSGDSLEFAAT 179 Query: 173 DGHRLAVCSMP------------IGQSLPSHSVIVPRKGVIELMRMLD--GGDNPLRVQI 218 DGHRLAV P G L +V +P + + EL RM+ G + + + + Sbjct: 180 DGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLVV 239 Query: 219 GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF 278 + +GD TS+ ++G +P Y +++P+ + + L + R ++L+++K Sbjct: 240 NDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQKN 299 Query: 279 RGVRLYVSE--NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 V + NQL++ + EE + G +I FN+ Y++D L AL ++ Sbjct: 300 NLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPSNDI 359 Query: 337 RMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +M L + V Y+VMP+RL Sbjct: 360 QMQLNEGNQPVIFTPLGGLKMTYLVMPVRL 389 >UniRef50_Q1JZF2 DNA polymerase III, beta subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZF2_DESAC Length = 372 Score = 356 bits (914), Expect = 9e-97, Method: Composition-based stats. Identities = 109/373 (29%), Positives = 212/373 (56%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVA 58 MK T ++ LLK L V G + + TLPIL N+LL+ T L LT TDLE+ + + Sbjct: 1 MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + G T+ A+K ++I + L + E + + +G+++F++ L + +FP Sbjct: 61 -AEIISDGKITISAKKLYEIVKELADAEITLKVKENNWVEIINGKAKFNIVGLSSEEFPL 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG----EELRTVATDG 174 + D Q++ ++ T+K +I+ T +++++ + ++ LNG+ +E ++ V+TDG Sbjct: 120 ITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVSTDG 179 Query: 175 HRLAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRL++ + L VI P+KG+ EL +++D + +++ I NN ++ + Sbjct: 180 HRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETTLV 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 +L+DG FPDY+RV+P+ D + + ++L R ++L+NEK +G+ + +N++ +T Sbjct: 240 MRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEINVT 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 ++NPE +A E + Y G ++IGFN Y++DV++ + +++R+ + D++S I Sbjct: 300 SSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISNVVDKDIRIYIKDNMSPCLILPED 359 Query: 354 SQSAAYVVMPMRL 366 + + V+MPMR+ Sbjct: 360 TNNYLAVIMPMRI 372 >UniRef50_Q1B045 DNA polymerase III, beta subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1B045_RUBXD Length = 375 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 168/372 (45%), Gaps = 9/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ L L VS + R + +L +LL+ +G L L+ TD+E+ + R Sbjct: 1 MRAVCNTGVLAGKLALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTRSP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G +PAR F DI R LPEG I +E ++RS + + + A DFP L Sbjct: 60 EVEEAGRLVIPARIFSDIVRSLPEGMISIEHDVESGAAVLRSRENEYRIRAYAAEDFPAL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ E F + + ++ S + + R L G+L E LR V TD +RL++ Sbjct: 120 PEFSEEGSFRVSGEALVETVQKVSSSYSRDETRPVLTGILISFEDSRLRMVTTDSYRLSI 179 Query: 180 CSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLV 237 + + I+P + + E+ R+ G D + VQ+ N VGD + +KL+ Sbjct: 180 KETELATTFEGKREAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGTKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR--GVRLYVSENQLKITAN 295 G FP+YRR+LP ++ + D + + R + + + V L SE +++ Sbjct: 240 AGNFPEYRRLLPAAFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEVVVR 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--AA 353 + E EA E + + + I FN Y+LD ++A+ E V + + I Sbjct: 300 SGEVGEAHERIPASSE-DDFTISFNPGYLLDGISAVDTEKVVFKFNEPLKPGLIVPNGEE 358 Query: 354 SQSAAYVVMPMR 365 Y++MPMR Sbjct: 359 EPDFRYLIMPMR 370 >UniRef50_C8N933 DNA polymerase III, beta subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N933_9GAMM Length = 371 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 209/371 (56%), Gaps = 5/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MKF++ +E L+PL +SG + + T PIL + LLQ AD +L L GTD E+ + + Sbjct: 1 MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLKGTDTEVTLQILLHE 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + GA TVPA K D+ R LP A I LE E++LV++ S F ++TLPA DFP L Sbjct: 61 LNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKEQLLVKAAGSLFRIATLPAEDFPAL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRL 177 + E + +++ +FSMA +DVRYYLNGM +G + V+TDGHRL Sbjct: 121 AEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVSTDGHRL 180 Query: 178 AVCSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + P+ ++IVP+KGV EL+++L P+ + +G + +G + TS+L Sbjct: 181 SCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYRLTSQL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +DG FP+Y +VLP+ + + ++ RA +L ++ G+RL E L++ A N Sbjct: 241 IDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQLAARN 300 Query: 297 PEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 E E A+E L+ + ++E+ N++Y++D + + +NV++ + D S I + + Sbjct: 301 LENETADETLEIINPQNLQLEVALNINYLIDAIATISGDNVQLHIADGSSPCLITSSDDE 360 Query: 356 SAAYVVMPMRL 366 YV+MPMRL Sbjct: 361 GVRYVIMPMRL 371 >UniRef50_C8WXS8 DNA polymerase III, beta subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXS8_ALIAD Length = 374 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 191/372 (51%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+++++ L LQ VS + R +L +L++V + + T DLE+ + RV + Sbjct: 1 MEFSLQKQALSNALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60 Query: 61 Q-----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAA 114 + H+ GA +PAR F DI R LP+ EI ++++ M + + F L + A Sbjct: 61 EETGLRVHQTGAIVLPARYFGDIVRKLPD-TEIHMRVDANYMTEISAQSVEFHLHGIDAE 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 +FP L ++ +P +T+ RLIE+T F+ A +VR L G+ ++ L +ATDG Sbjct: 120 EFPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGVSITSDPTHLTFIATDG 179 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLA +P LP V++P K + EL ++L + + + + ++ +G F + Sbjct: 180 LRLAQHRVP-QADLPERQVVIPAKSLSELSKILPEDETSVEMVLTPSHGLFVIGPTRFYT 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKIT 293 +L++G +PD R++P++ + D A RAA+++ +K VRL V+ + L +T Sbjct: 239 RLLEGTYPDTSRLIPRSARTQVVLDGDAFLHAIDRAALIARDKDNHMVRLEVTGDTLTVT 298 Query: 294 ANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +++PE E L G +++I FN YV++ + AL + + + + IE + Sbjct: 299 SHSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAAEIAIRFNGANQAFVIERS 358 Query: 353 ASQSAAYVVMPM 364 S ++ P+ Sbjct: 359 GDPSMLQLISPI 370 >UniRef50_C8WIM7 DNA polymerase III, beta subunit n=2 Tax=Coriobacteriaceae RepID=C8WIM7_EGGLE Length = 366 Score = 353 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 179/369 (48%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ + L L V + R TLPIL + L D TL+L TDLE+ + VA + Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VP + F +I + LP+ A + V E + ++ + FS+ TL A DFP Sbjct: 61 -IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAVITCDTASFSIKTLDAEDFPGFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E ++P +++ ++ + R L G+L E L+ VATD +RLA+ Sbjct: 119 HVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVLITLEDTTLKMVATDSYRLAIT 178 Query: 181 SMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + +S ++ + E+ L ++ L++ + N I D +F ++ ++G Sbjct: 179 EAELPESSAEEFQAVIAGSFLQEISS-LPRSEDDLKLALAENQIVVTYHDTVFINRRLEG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKITANNP 297 FP+YR++LP + + L R ++L + VR ++ ++++A Sbjct: 238 NFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFAINMASQTVQLSAVAQ 296 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + A+E L G ++EI FN +YVLD L+++ +NV + + S+ + ++ Sbjct: 297 DVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVSTDNVFLEVQSSMKPGIFKADEGENF 356 Query: 358 AYVVMPMRL 366 Y+VMP+R+ Sbjct: 357 LYLVMPVRI 365 >UniRef50_C1F9N7 DNA polymerase III, beta subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9N7_ACIC5 Length = 373 Score = 353 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 110/374 (29%), Positives = 201/374 (53%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +V R+ LL+ L + + T+PIL N L++ + L++T TDL+ M A Sbjct: 1 MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +PG+ T+PARK +D + LPEG ++ + +RSGRS + + A+FP + Sbjct: 60 KVKKPGSCTIPARKLYDYVKLLPEGDVSIKLMDNHWVQIRSGRSNTKMVGMARANFPQVP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ S +P A+++ LI T F++++++ RY LNG L + E + VATDGHRLA Sbjct: 120 EFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAESIAMVATDGHRLAHI 179 Query: 181 SMP---IGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKL 236 ++PRK + EL +L D + + + +G + TS+ Sbjct: 180 EKSGENFPSMGAEKKTLIPRKALSELQSLLGNTDAESVEFADDDSTLFFRIGHRVLTSRK 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 + G+FP+Y VLP++ +K + L ++ + ++E+ +++ + +N+LKI+A++ Sbjct: 240 LTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKISASS 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQIEDAASQ 355 + E+E++++ YS + +GFN +Y+LD L A+ VR+ D+ S+ Q+ Q Sbjct: 300 TDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGNTGEVRLEFKDAQSAGQMRPEDGQ 359 Query: 356 S---AAYVVMPMRL 366 Y++MPMR+ Sbjct: 360 EDYKYRYIIMPMRI 373 >UniRef50_B7K0V0 DNA polymerase III, beta subunit n=13 Tax=Cyanobacteria RepID=B7K0V0_CYAP8 Length = 393 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 180/392 (45%), Gaps = 27/392 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD--GTLSLTGTDLEMEMVARVA 58 MKF + L L VS + RPT P+LGN+LL + G +SLT DL + + + Sbjct: 1 MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLLVADESKGRVSLTAFDLSLGIQTSFS 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAV------QLEGERMLVRSGRSRFSLSTLP 112 + + G +PA+ DI LPEG + + + + + ++S +F L + Sbjct: 61 -AEVSQGGTVALPAKLLNDIVSRLPEGEITLIADADESEDDSQIITLKSASGQFQLRAMS 119 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A +FP+L + L + + ++ + F+ + + + L G+ + L AT Sbjct: 120 AEEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGVHLAGTVDSLEFAAT 179 Query: 173 DGHRLAVCSMPI--------------GQSLPSHSVIVPRKGVIELMRMLDG--GDNPLRV 216 DGHRLAV + P+ SV +P + + EL RML G + + + Sbjct: 180 DGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTVAL 239 Query: 217 QIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE 276 + I +G+ TS+ +DG +P Y +++P+ + + + R A+L+++ Sbjct: 240 YVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLADQ 299 Query: 277 KFRGVRLYVSENQ--LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 K V+ + ++ + ++ + +A+E + +G ++ FNV Y++D L AL + Sbjct: 300 KNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALPSQ 359 Query: 335 NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +++ L + V + Y+VMP+++ Sbjct: 360 EIQIQLNEGNQPVILTPLGGLKMTYLVMPVQI 391 >UniRef50_B0K0W9 DNA polymerase III, beta subunit n=11 Tax=Thermoanaerobacterales RepID=B0K0W9_THEPX Length = 370 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 187/371 (50%), Gaps = 7/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ++ L + + + R TLPIL + + G + +GTDL++ + ++ V Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VPA+ F ++ R LPEG + V F+++ A +FP + Sbjct: 61 -IEEEGEIVVPAKIFSELVRKLPEGDVKIESDSQNTVNVVCDSINFTIAGSDAVEFPEIP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E F L Q +K LI T F +A + R L G+LFE E++ VA DG R+A+ Sbjct: 120 LVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVKAVALDGFRMAIY 179 Query: 181 SMP-----IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 S + + +S+++P K + E+ R+L + + + +N + + + S+ Sbjct: 180 SYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTKVISR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L++G F +Y VLPK+ + ++L ++ RA++++ K ++ + + + +++N Sbjct: 240 LLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFITVSSN 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + E+ + E ++V G +EI FN Y+LD L A+ E + + +S++ + I+ S+ Sbjct: 300 S-EKGKMIEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEITLYFINSINPLIIKPIGSK 358 Query: 356 SAAYVVMPMRL 366 Y+++P++L Sbjct: 359 DYLYMILPVKL 369 >UniRef50_A7VRS4 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A7VRS4_9CLOT Length = 440 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 178/372 (47%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MK ++ L++ + V + + TL L +LL+ +G L L G DLE+ + + Sbjct: 68 MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELGITTVIE- 126 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 Q EPG + AR F DI R LP+ + E + G S FS+ +P++++P L Sbjct: 127 AQVDEPGEVVLSARLFGDIVRRLPDETVTILVDEKMITQITCGPSEFSIVGIPSSEYPEL 186 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + L +K +I T F++A D + G LF E +R V+ DG+RLA+ Sbjct: 187 PSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRLVSVDGYRLAM 246 Query: 180 CSMPIG---QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + I + +VP K + E++++L D + + +G +I + + S+L Sbjct: 247 RTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSVISRL 306 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVS-ENQLKITA 294 ++G F DY+ +P + L + R ++L ++ VR S + ++KI+ Sbjct: 307 LEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEIKISC 366 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 +A + L +G E+EIGFN Y+LD L + V++ LT VS ++I Sbjct: 367 VTS-IGKANDELSAQITGPEVEIGFNNRYLLDALRNADTDEVKVQLTGPVSPMKIVPTQG 425 Query: 355 QSAAYVVMPMRL 366 S ++V+P+RL Sbjct: 426 DSFLFLVLPVRL 437 >UniRef50_Q5GSK7 DNA polymerase III beta clamp subunit n=11 Tax=cellular organisms RepID=Q5GSK7_WOLTR Length = 393 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 199/367 (54%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F + R LL L +VSG + R + IL + ++ G++ L TDL++ + A +A Sbjct: 29 MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLA-A 87 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 G V A DI + LP ++ ++ + ++L+ G + FSL + P L Sbjct: 88 DVLTEGEVKVSAHTLHDIVKKLPADLDVNFEVNDQGKLLISYGNANFSLPNVVLNKLPVL 147 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + +FTL + L+ T+F+++ D RY LNG+ T+ + L VATDGHRL+ Sbjct: 148 EEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQFLYCVATDGHRLSC 207 Query: 180 CSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P Q+ VI+PRK VIEL+++LD D + +++ I+ G +I SKL+D Sbjct: 208 VKKPKPQNINSEFGVIIPRKTVIELLKVLDDCDE-INIKLSDRKIKFTCGKYIIISKLID 266 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FPDY+ V+P + DK + L R +++ +++ + + + E L + +N+ E Sbjct: 267 GAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSNSQE 326 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +A E ++V Y+GA +EIGFN Y+LD L+ +K + L+DS S+ I D + Sbjct: 327 CSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIKS-KCKFSLSDSSSATVITDENDPNVL 385 Query: 359 YVVMPMR 365 Y+VMP+R Sbjct: 386 YIVMPVR 392 >UniRef50_Q38ZS3 DNA-directed DNA polymerase III, beta subunit n=64 Tax=Lactobacillales RepID=Q38ZS3_LACSS Length = 379 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 187/377 (49%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ R +K L V + + T+PIL L L ++ L+LTG+D ++ + A ++ Sbjct: 1 MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60 Query: 61 Q------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 E G +PAR F +I + LPE + +RSG+S F+++ L A Sbjct: 61 DEKNQLVVEEVGEIVLPARFFSEIVKKLPEDQMRIAVGNNFQTTIRSGKSEFTINGLDAN 120 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 +P+L + + F++ +K+LI T ++++Q+ R L G+ E+ VATD Sbjct: 121 SYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGVHLVLANGEMLAVATDS 180 Query: 175 HRLAVCSMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA +P+ S ++ VI+P K ++EL R L + ++I N + G+ F Sbjct: 181 HRLAQRKLPVALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAGNLAFY 240 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYV--SENQL 290 S+L++G +PD R++P + +E +L A RA++LS+E + VRL + N Sbjct: 241 SRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDTEANTA 300 Query: 291 KITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 I N+P+ EE L +G +EI FN Y+ D L + + + T ++ + Sbjct: 301 IIYGNSPDVGNVEEALQFENLTGESLEISFNPDYMKDALRSFGQTTIVINFTAALRPFTL 360 Query: 350 EDAAS-QSAAYVVMPMR 365 + + ++ P+R Sbjct: 361 VPSEDQEHYIQLITPVR 377 >UniRef50_D0MJZ8 DNA polymerase III, beta subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJZ8_RHOM4 Length = 379 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 174/375 (46%), Gaps = 9/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV LLK L V+G + + T+PIL +L + DG L L+ TDLE+ +V R+ + Sbjct: 1 MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60 Query: 61 QPHEPGA-----TTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + G VPAR+ + R LP+ E + + + + + + AD Sbjct: 61 LELQNGKEGARRVAVPARRLLETLRALPDLPVQFSADESFNVTLTTDQGHYKMVGFDGAD 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L + T+ A ++R I+ T F+++ +R + G+ F+ + EE R VATDGH Sbjct: 121 YPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRVVATDGH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL + S IVP K + ++ D +++ ++ +G S+ Sbjct: 181 RLVRLRLRELVSETPLEFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGPVRIISR 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D +P+Y V+P D+ L D A R + ++ VRL + + ++I A Sbjct: 241 LIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDHVEIAAE 300 Query: 296 NPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--- 351 + E EA E + Y G M IGFN Y+ +VL + + V + + + + Sbjct: 301 DIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDSDEVVLEFSSPNRAGVVMPHEQ 360 Query: 352 AASQSAAYVVMPMRL 366 A + ++MP+ L Sbjct: 361 AEGEDLLMLIMPVML 375 >UniRef50_UPI0001C311AE DNA polymerase III, beta subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311AE Length = 369 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 180/369 (48%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + RE LL LQ VS R + L + L A G + L TD+E+ + + Sbjct: 1 MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGLRVPLP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +PAR D+ R L A + ++ + + + +G ++F + TL A DFP Sbjct: 60 EIEREGSVVLPARLIVDVVRSLSGPTATLELRPAEQDVELVAGNAQFHIRTLRAEDFPPF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + +SE ++P + S + + R L G++ ELR VATD +RL+V Sbjct: 120 PEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRMVATDSYRLSV 179 Query: 180 CSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLV 237 + + L VP + + EL R++ D L V + N + +G+ + +S+L+ Sbjct: 180 KETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSSRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G+FP+YR++LP + + L + R ++L+ +K +RL + +L ++A P Sbjct: 240 EGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLA-QKNAPLRLSFAPGELTVSAQTP 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + EA E L V + G EIGFN ++ D L ++ +V + L + I+ A Sbjct: 299 DIGEARESLPVAFQGEPFEIGFNPDFLRDGLESVGSGDVMLKLISPLRPGLIQSAEDGGF 358 Query: 358 AYVVMPMRL 366 Y++MP+RL Sbjct: 359 LYLIMPIRL 367 >UniRef50_Q67TK6 DNA polymerase III beta subunit n=1 Tax=Symbiobacterium thermophilum RepID=Q67TK6_SYMTH Length = 368 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E L L V+ + + T+P+L + L G L++ TD+E+ + A V Sbjct: 1 MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEA-VTPC 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G T +PAR F D+ R +P G E++V +R GRS++ + A FP L Sbjct: 60 EVISEGETVLPARYFADLIRRIPYGNIELSVDYHNHVATLRWGRSQYVIHGFAADQFPTL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D FT+ Q+ ++ L+ T F+ H + + +L G+LF+ + L ATDG R+A Sbjct: 120 PDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKLRDDLLTGTATDGIRIAY 179 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + S SVI+P + + E+ R+L D+ + V + +N + +G+ S+L+ Sbjct: 180 AEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVISRLL 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G++PD R++P++ +A RA +++ + V++ +++ IT+N P Sbjct: 240 EGQYPDVMRLVPQHYPTEAVLPGAEFMEALERATLITKDG--AVKISFQTDKVTITSNTP 297 Query: 298 EQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E + E L VT +G ++IGFN Y+LD L L+ + R + S + ++ A S Sbjct: 298 EVGQVYEELAVTSMAGDPLDIGFNARYLLDFLKVLEEKQFRFQCSGSRNPARLMPADSSQ 357 Query: 357 AAYVVMPM 364 YVV+P+ Sbjct: 358 FLYVVLPL 365 >UniRef50_A5I9F2 DNA polymerase III beta chain n=6 Tax=Legionella RepID=A5I9F2_LEGPC Length = 367 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 139/366 (37%), Positives = 230/366 (62%), Gaps = 2/366 (0%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + T+++E LL PL VSG + + +L IL + LL+++DG L +T TDLE+EM A+VA Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 + G+ TVPA+KF DI R L E ++ + + ++ RS F L+TLPA ++P+ +D Sbjct: 63 NNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKALVTIKQNRSTFKLATLPAENYPSSED 122 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 ++VE T+P+ + +L+++T F+M+ QDVR +LNG+L E + + VATDGHR+A+ Sbjct: 123 ECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSNIISAVATDGHRMAISR 182 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +++P+KGV EL+R+L+ D + + G ++I+ F+F SKL++ R Sbjct: 183 YSCNN-ITQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLSKLIEAR 241 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP Y + +P+ DK++ C LK+A +R IL++EK + V L++ QL + ANN EQE Sbjct: 242 FPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTLIANNNEQE 301 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EA E L G E++IG N +Y+LDVL +R+ ++++ SS+ IE + + Y+ Sbjct: 302 EAIETLSAETQGDELKIGLNATYLLDVLAHFSDGQIRLSMSNTESSILIESLVNDNYQYI 361 Query: 361 VMPMRL 366 +MPM++ Sbjct: 362 IMPMKI 367 >UniRef50_C9YCP5 DNA polymerase III subunit beta n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCP5_9BURK Length = 362 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 133/337 (39%), Positives = 206/337 (61%), Gaps = 1/337 (0%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 ++ +L LQ V+G + R TLPIL N+LL+ +L LT +DLE+++ L Sbjct: 4 LKATQDKVLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGD 63 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 TT+ ARK DI R +P ++++ +++++ G+S+F+L T+ A DFP + + Sbjct: 64 TGSFTTTIGARKLIDILRTMPGDQTVSLESSQSKIILKGGKSKFTLQTMQAEDFPLVQES 123 Query: 123 QS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 S F++PQ T+K L+ F+MA D+RYYLNG+LF EG++L VATDGHRLA S Sbjct: 124 ASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFAS 183 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRF 241 + +P VI+PRK VIEL R+L + + +Q +N + F +KLV+G+F Sbjct: 184 ATLDVEVPKQEVILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTKLVEGKF 243 Query: 242 PDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEE 301 PDY RV+PKN + G + L + R AIL+++KF+GVRL + L++ +NN EQEE Sbjct: 244 PDYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASNNAEQEE 303 Query: 302 AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 A + LD+ Y G +EIGFNV+Y++D L+ + + V++ Sbjct: 304 AVDELDIDYGGDSIEIGFNVTYLIDALSNMSQDMVKV 340 >UniRef50_C0QRL0 DNA polymerase III, beta subunit n=3 Tax=Aquificales RepID=C0QRL0_PERMH Length = 364 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 186/367 (50%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +++ L L++ + LPIL N LL+ D L++ GTDLE+ + V Sbjct: 1 MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSV-FA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G V A+K DI R LP E+ ++LE + ++SG+++++L P+ DFP + Sbjct: 60 KIENEGTACVNAKKLTDISRLLPSN-EVYIKLEDSTLKIKSGKTKYNLPVAPSEDFPQMY 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + +++ I T ++ + ++ RY L G+LF + + VATDGHRLA+ Sbjct: 119 PFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGNIDVVATDGHRLALY 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ ++IVP+K + EL ++L G ++ + V ++I ++L++G Sbjct: 179 TIE-RTGKGDINIIVPQKALNELKKLLTGLED-VEVAATDQYAFFRTKEWILMTRLLEGV 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY +V+P + ++ ++ R + + + ++L + L++ + + E Sbjct: 237 FPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSVSVEYG 296 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS-AAY 359 EA + L V Y G E IGFN Y+++ + + + V + T+ + I A + Sbjct: 297 EAVDELSVDYEGEEYSIGFNAKYLIEAVEVIDGDEVVIKFTNPNAQTLIIPADQEDRYKA 356 Query: 360 VVMPMRL 366 +VMPM + Sbjct: 357 IVMPMEI 363 >UniRef50_D0KVU1 DNA polymerase III, beta subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVU1_HALNC Length = 370 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 147/371 (39%), Positives = 220/371 (59%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V+R+ + QV G + R T+ IL NLLL+VADG L+L TDLE+++ V V Sbjct: 1 MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVD-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q PGATTV ARK DI + + A+IA+ + + G F L+++ A FP + Sbjct: 60 QMQAPGATTVNARKLADIVKSASQDAKIALTQTDGWLEIDIGTGVFRLASIEAGSFPQMT 119 Query: 121 -DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D ++ ++ Q + LI+ TQFSMA QDVRY+LNG+L E + ++ VATDGHRLA Sbjct: 120 IDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPGQMTAVATDGHRLAY 179 Query: 180 CSMPIGQ-SLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + + VIVPRK V E+++ LD D+ + + N I +G+ SKL+ Sbjct: 180 AHLSDERLTENNRQVIVPRKMVSEMLKALDRDSDDEVSLAFRDNQIELLIGENYLISKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG++PDY RV+P++ K L LKQ RA+ILSNE+F G Y+S +L I ++N Sbjct: 240 DGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMIESSNA 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--AASQ 355 E E ++E + V Y ++++I FN+SY+L++L ++ E V M L SSV I+ Sbjct: 300 EHESSKETMSVGYDASDLKISFNISYLLNILAVIESEEVCMELEAPESSVLIKPVMPGDI 359 Query: 356 SAAYVVMPMRL 366 + YV+MPM+L Sbjct: 360 DSKYVLMPMKL 370 >UniRef50_A0Q3U8 DNA polymerase III, beta subunit n=19 Tax=Francisella RepID=A0Q3U8_FRATN Length = 367 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 218/369 (59%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F + R+ LLKPLQ + + T+P+L +L + + L +T +DL+ E+ +A V Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + A K ++I R L E + I ++ ++ + S S F+L +L A ++P +D Sbjct: 60 SCNTTIKLALNADKIYNIVRSLNENSMIDFRVNENKVTIVSNNSTFNLISLNADNYPLID 119 Query: 121 -DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + F L Q +I FSMA+ D RY+LNGM +E LR V+TDGHR+++ Sbjct: 120 SNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRMSI 179 Query: 180 CSMPIGQSL--PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I + + I+P+K ++EL +++ + +++ +G N ++A G++ F SKL+ Sbjct: 180 TEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DGR+PDY++V+PKN K L K + R +IL+N+K++GVRL +S+NQL ++ANNP Sbjct: 240 DGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + E+AE+ ++V Y+ MEI FN Y+LD++N L E + + L + S ++D ++ Sbjct: 300 DNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLSEETMSIYLDNPNMSALVKDEKD-NS 358 Query: 358 AYVVMPMRL 366 +++MPM++ Sbjct: 359 LFIIMPMKI 367 >UniRef50_B5EJ65 DNA polymerase III, beta subunit n=3 Tax=Acidithiobacillus RepID=B5EJ65_ACIF5 Length = 365 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 204/368 (55%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T++RE LL L ++ RP PIL ++L++ A TDLE+++ A + Sbjct: 1 MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSADLDHP 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 PG VPARK +DICR LPE I +GE++L+++ +SRF+L LPA FP L Sbjct: 61 -VDAPGTCAVPARKLYDICRALPEHTPIEFHKDGEKLLLKAAKSRFTLHILPADQFPYLS 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 S + T + + +MA D R +LNG+L E EG+ELR VATDGHRLA+ Sbjct: 120 THSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRLVATDGHRLAMM 179 Query: 181 SMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 ++P SL S S I+PRK V+EL+R+LD GD + +++ + + G F KL+D Sbjct: 180 TLPFASSLESGSYQAILPRKAVLELLRILDDGD--IVLEMSDASFLLNDGTQQFACKLID 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 ++PDYRRV+P+ + K A ++ +L +++ L++ +Q+ + + N E Sbjct: 238 AKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRSRNEE 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEE E + V Y G ++I FN Y+ D E++RM + DS SS S + Sbjct: 298 QEEGEIQIPVEYQGDTLDIAFNSRYLTDTTQIFPQESLRMRVKDSDSSAVFTPVDSNNPL 357 Query: 359 YVVMPMRL 366 Y++MP+RL Sbjct: 358 YIIMPVRL 365 >UniRef50_B8FM62 DNA polymerase III, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM62_DESAA Length = 376 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 178/378 (47%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F++ +E L + +V G G + T PI N+L+ T++L TDLE+ Sbjct: 1 MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G T+P +K F+I R P GA LE + + + ++ + + DFP L Sbjct: 60 TVEEEGTITIPGKKLFEIVREFPHGAIDVRDLENGWVQIFKDKVQYKIVGMDPNDFPKLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFS--MAHQDVRYYLNGMLFET----EGEELRTVATDG 174 + + F L +IE T S M+ ++ R +L G+ E E LR V+TDG Sbjct: 120 EVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVSTDG 179 Query: 175 HRLAVCSMPIGQSLPS------HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG 228 +RLA + + VI+P+K + E++R+ G + + + N Sbjct: 180 NRLARVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRV-SEGGGKISLGVQKNYFVIQKE 238 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN 288 +LV+G +PDY V+P + + E R +IL +E++R VR V Sbjct: 239 AETIIGRLVEGEYPDYNLVIPNDLETFFEIEKQPFVSILKRMSILCSERYRAVRFKVDPQ 298 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 +L+++ NNPE ++ E + + ++G E FN + +D LN +K + +++ + DS Sbjct: 299 RLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKSDMIKVNILDSSKPCI 358 Query: 349 IEDAASQSAAYVVMPMRL 366 +E + V+MPMR+ Sbjct: 359 LEGSEDPRYLSVIMPMRM 376 >UniRef50_Q3Z759 DNA polymerase III, beta subunit n=5 Tax=Dehalococcoides RepID=Q3Z759_DEHE1 Length = 378 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 177/375 (47%), Gaps = 12/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T +E+L K L V GR TLPI N+L+ DG L L T+LEM + + Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWI-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+TTVPA+ + LP E+ + + + + ++ R ++ + A DFP + Sbjct: 60 KIEEEGSTTVPAKLLTEFVSSLPNDKIELNLNAKSKALNIKCARFEARITGVDAKDFPPV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + ++ + F+ A + R L G+ E EG L A DG RLAV Sbjct: 120 PKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAADGFRLAV 179 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAHVGDFIFTSK 235 +P+ +++ + VI+P + + EL R+ + + V + I + + S+ Sbjct: 180 YKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIELVSQ 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV------SENQ 289 LV G FP Y +++P++ + + A A I + + VRL + + + Sbjct: 240 LVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNTPGK 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L I+A + E + LD G E +I FN Y+LDVL LK + V + +T S I Sbjct: 300 LTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKAQQVSLEVTSPSSPGVI 359 Query: 350 EDAASQSAAYVVMPM 364 + + + +V+MPM Sbjct: 360 KPVGADNYIHVIMPM 374 >UniRef50_P27903 DNA polymerase III subunit beta n=29 Tax=Actinomycetales RepID=DPO3B_STRCO Length = 376 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 164/378 (43%), Gaps = 16/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK VER+ L + + + L RP P+L LLL+ +G LSL+ D E+ V Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G V R DI R LP + + +G R V G SRF+L TLP ++P L Sbjct: 60 EIEEEGTVLVSGRLLADISRALPNRP-VEISTDGVRATVVCGSSRFTLHTLPVEEYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E T+P ++ + D L G+ E EG+ + +TD +R AV Sbjct: 119 QMP-EATGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTLASTDRYRFAVR 177 Query: 181 SMPIGQSLPSHSVI--VPRKGVIELMRMLDGGDNPLRV----QIGSNNIRAHVGDFIFTS 234 P S + VP K + + + L GD + G I T+ Sbjct: 178 EFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGRRTTT 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L++G P Y+ + P + +A R A+++ E+ VRL + L + A Sbjct: 238 RLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVLILEA 296 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--- 351 + + +A E +D G ++ I FN +++LD L+A+ ++ T S + Sbjct: 297 GSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPVAQLSFTTSTKPALLSGRPA 356 Query: 352 ---AASQSAAYVVMPMRL 366 A ++ Y++MP+RL Sbjct: 357 VDAEADEAYKYLIMPVRL 374 >UniRef50_Q4FVT2 DNA polymerase III, beta subunit n=5 Tax=Moraxellaceae RepID=Q4FVT2_PSYA2 Length = 391 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 149/392 (38%), Positives = 226/392 (57%), Gaps = 27/392 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVA--RVA 58 M+ ++ RE LLK + ++ R + ILGN+ LQ+++ L LT +DLE+E+ + ++ Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 + G TT+PA K DIC+ LP A++ + E ER L+ SG+SRF+L TLP+ D+P Sbjct: 61 AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTTQENERCLLTSGKSRFTLGTLPSEDYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +L + ++ T+ ++ + LI TQF+MA QDVRYYL GMLF+ ++L TVATDGHRL Sbjct: 121 SLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQQLTTVATDGHRL 180 Query: 178 AVCSMPIGQSLP-SHSVIVPRKGV-------IELMRMLDGGDNPLRVQIGSN--NIRAHV 227 A+ I + + I+PRK V EL +ML DN + + G + Sbjct: 181 ALARSVIDVNADLNMQAILPRKAVIELERLASELGKMLGDQDNAVTLSFGREFLQVSLPF 240 Query: 228 GD------------FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN 275 GD FT++L+DG+FPDYRRV+P N DK + + R AILSN Sbjct: 241 GDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVAILSN 300 Query: 276 EKFRGVRLYV-SENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 EK RGV S+ +++ ANN EQ+EA E++ Y G ME+ FN +Y+ DVL ++ + Sbjct: 301 EKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGVIQGD 360 Query: 335 NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 ++M ++ S +SV + + YV+MPMR+ Sbjct: 361 -LQMHMSQSNASVLVNQLNDEFHQYVIMPMRI 391 >UniRef50_B0S417 DNA polymerase III beta subunit n=2 Tax=Finegoldia magna RepID=B0S417_FINM2 Length = 367 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 187/367 (50%), Gaps = 7/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ LLK + + R T+ IL +L + L L TDLE+ +V A Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLEL-IVDTRANC 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +E G + + +I R LP+ A+I ++++ + ++ + F++ + +FP+L Sbjct: 60 EIYEKGQIVINSSMIGNIIRKLPD-ADIYIEVDDNNINIKCLSTEFNIQGQDSNEFPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +V+ TL Q+ ++ I T F+ + R L G+LF + + VA DG+R+++ Sbjct: 119 YIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEFVALDGYRVSLD 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S IVP + + E+ ++L+ G+ L + G NI + + S+L+DG+ Sbjct: 179 CLS-NVSEFEMKAIVPARALNEVYKILEEGEITLNIITG--NIIFKLENTDVYSRLIDGQ 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPEQ 299 + DY +V+ ++ + L+ A RA++++ E K V+L S N+L I++ N + Sbjct: 236 YIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS-NTDI 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + +E + G ++ I FN Y+LD L + +++ + ++ S+ + + + Y Sbjct: 295 GKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVIDDDDITLNMSGSLRPMVFKPLNDTNYTY 354 Query: 360 VVMPMRL 366 +V+P++L Sbjct: 355 LVLPVKL 361 >UniRef50_B8CZN5 DNA polymerase III, beta subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZN5_HALOH Length = 367 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 178/368 (48%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 M+FT+ ++ + + V + + T+PIL + L+ D L + TDLE+ + V Sbjct: 1 MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVK- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 G +PA I R LP+ L+ + SRF + A +FP Sbjct: 60 ADIITEGKIVLPASHLSGIIRELPDDNINFKADLDKYEAELTCLSSRFKIKGFDADEFPQ 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L + + TL + RLI+ +FS + + L G + ++R VAT+ +RL+ Sbjct: 120 LPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVIDSGKIRMVATNTYRLS 179 Query: 179 VCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + S+ + G VI+P + EL +LD D + + IG N +R + + S+++ Sbjct: 180 LSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVSRVI 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G+FP+Y++VLPK + + + L ++ R ++++ + + V +N++ IT+ + Sbjct: 239 EGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITSQDS 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E+ A E +++ G E I + Y+LDVL L + V + L ++ + ++ S Sbjct: 299 EEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLNDDVVILELIGPLNPLTLKKENSDDF 358 Query: 358 AYVVMPMR 365 Y+VMP+R Sbjct: 359 IYLVMPVR 366 >UniRef50_B9KZ05 DNA polymerase III, beta subunit n=2 Tax=Thermomicrobia (class) RepID=B9KZ05_THERP Length = 380 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 108/378 (28%), Positives = 177/378 (46%), Gaps = 13/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + L + L QVS + R TLP+L N+LL + L +T T+LE+ + Sbjct: 1 MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 + +PG +V A F + LP+ I G + V G S+ + +PA DFP+L Sbjct: 60 EVTDPGQLSVRADVFTEFIGSLPKQDVILSGTTGSNDLRVTCGTSKARIPGIPAEDFPSL 119 Query: 120 DDW-QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 T+P ++ I F+ A D R L G+L E G EL A DG RL+ Sbjct: 120 PRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTLAAADGFRLS 179 Query: 179 VCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFTSK 235 V S+ + Q + ++IVP + + EL R+L G+ +++ + N + A G F S+ Sbjct: 180 VRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEFLSR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV-------SEN 288 L+DG FP++R+++PK + + A RA I + V+L++ Sbjct: 240 LIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSELDPG 299 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 L ++A + + E+IL G E I FN Y+ DVL+ K + + +T ++ Sbjct: 300 SLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKATEIALEMTTPNAAGV 359 Query: 349 IEDAASQSAAYVVMPMRL 366 +S +VVMPM + Sbjct: 360 FRPVGDESFVHVVMPMVI 377 >UniRef50_B9KGQ1 DNA polymerase III beta chain (DnaN) n=12 Tax=Anaplasmataceae RepID=B9KGQ1_ANAMF Length = 379 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 193/369 (52%), Gaps = 6/369 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + ++ RE LL+ L VS + R ++ +L + ++ DG + L+ TDL++ + A V Sbjct: 13 ECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNASV 72 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 H+ G A+ +DI R L + ++ R+LV G ++F L + FP ++ Sbjct: 73 VHK-GVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVECGNAKFFLHVVAPEKFPAIEG 131 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + + F + + + L+ T+FSM+ ++ RY L G+ + L VATDGHRL++ Sbjct: 132 GEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAEDMLCCVATDGHRLSLAK 191 Query: 182 MPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAHVGDFIFTSKLV 237 + + L P VIVPRK V EL++++ GG + + V I I + SK+V Sbjct: 192 VNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSKVV 251 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY ++P+ + L A R +++ +K + ++L + +L +++ + Sbjct: 252 DGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLTLSSASS 311 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 +Q +A E L+V Y G E+ IG N Y+++VL +K ++ D ++V I+D + Sbjct: 312 DQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGA-CEVVFQDGNTAVLIQDKEPGGS 370 Query: 358 AYVVMPMRL 366 +++MPMR+ Sbjct: 371 MHIIMPMRI 379 >UniRef50_B8HRT6 DNA polymerase III, beta subunit n=2 Tax=Chroococcales RepID=B8HRT6_CYAP4 Length = 374 Score = 344 bits (882), Expect = 5e-93, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 176/374 (47%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + L L +S + +PT P+ N+LL+ L L+ DL + M + Sbjct: 1 MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q PG+ T+PAR F DI LP A I + +E + + G + + L A +F L Sbjct: 60 QTEVPGSFTLPARFFNDIVSRLP-NAPITIAVESPTVTLACGAGHYQMQGLEAEEFTALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D LP + + ++AT F+ + + + L G+ + + L ATDGHRLAV Sbjct: 119 DLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEFAATDGHRLAVA 178 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----GDFIFTS 234 + P SV VP K + EL RML L ++ + G +S Sbjct: 179 YGQPEEFSPDTPLSVTVPAKALRELERMLGRTPVALTLRCDQTQVVFEFATEQGMARLSS 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKI 292 +L++G +P+Y+++LP+ ++ + R A+L+ +K V++ + QL + Sbjct: 239 RLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQQLDV 298 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A P+ EE L SG ++E+ FNV Y++D L A+ V++ + + + V + Sbjct: 299 SAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTASEVQIQMNAATAPVILSPL 358 Query: 353 ASQSAAYVVMPMRL 366 + Y++MP++L Sbjct: 359 SGTKMTYLIMPIQL 372 >UniRef50_C7MLD3 DNA polymerase III, beta subunit n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLD3_CRYCD Length = 365 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 171/368 (46%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + +E L+ V+ R TLPIL + L+L T+L++ + + Sbjct: 1 MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G +P++ D+ + LPE A + V+ E + S FSL T DFP Sbjct: 60 FIEEEGEAVIPSKLLTDVVKSLPEAA-VHVETTTETASIMCESSSFSLKTFDPQDFPGFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + + P +T +++ ++ + R L G+L E LR VATD +RLAV Sbjct: 119 EVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVHDGMLRMVATDSYRLAVT 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + + ++ + +L L L + + N I F ++ ++G Sbjct: 179 DIDFTTPSEDFTAVISGSFMSDLAG-LSDTGESLTLALAENQIVVTYDGTTFINRRIEGN 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE--NQLKITANNPE 298 +P Y +++P+ + +L +A R ++LSN K VR V++ ++I+ + + Sbjct: 238 YPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQISTASQD 296 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 EA E L G + EI FN YV+D L++++ E+V++ L S+ + ++ Sbjct: 297 VGEAHETLGAKIQGEDEEIAFNFGYVIDGLSSIETESVQLELQGSMKPGILRATEQENFL 356 Query: 359 YVVMPMRL 366 Y++MP+RL Sbjct: 357 YLIMPVRL 364 >UniRef50_B4UTW9 p081 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW9_BP163 Length = 378 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 199/369 (53%), Gaps = 15/369 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + R L + L VS + R T+PIL +L L ADG L++TGTDL++ + A Sbjct: 21 MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDI-VATDTAAA 79 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA V A+ DI + G ++++ + +++V+SGRSRFSL LPAADFP+L Sbjct: 80 DVTEGGAVCVDAKLLSDIAKK--TGGDVSLSEDKGQLIVKSGRSRFSLPALPAADFPDLS 137 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE---LRTVATDGHRL 177 + F + + L F+++ ++ R+YLNG+ + +R VATDGHRL Sbjct: 138 GGEYTASFDMD---LAALFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGHRL 194 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + VIVPRK V L + +RV + IR G+F+ TSKL+ Sbjct: 195 SRHQAAYPGEDAFKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTSKLI 248 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY+RV+P DK + G D ++QA +R +++S+E+ R V+L +E + K+ ++P Sbjct: 249 DGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAVSSP 308 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E A + + V Y G ++IGFN +Y+ +++ ++ + L D S + Sbjct: 309 ETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPAGDITLALADGGSPSVFTSEKAPEL 368 Query: 358 AYVVMPMRL 366 V+MPMR+ Sbjct: 369 LAVLMPMRV 377 >UniRef50_Q3A8P3 DNA polymerase III, beta subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8P3_CARHZ Length = 371 Score = 343 bits (881), Expect = 6e-93, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 175/372 (47%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 MKFT L + + + + P+L +L + + T++LT TDL+M + Sbjct: 1 MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFP 117 + E G+ + ++ DI + LPE + L E + +++ G S S++T +FP Sbjct: 61 -AKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNEGKCVIKYGASEVSVATYRPEEFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 ++ F + I+ F+ + R G+LFE G+ELR VA+D HRL Sbjct: 120 KNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRLVASDTHRL 179 Query: 178 AVCSMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 A I + + +VI+P + + E +R+ D L ++I + TS+ Sbjct: 180 AFRKTFIKREDTGKNINVIIPSRTLHEAVRIFGTVDELL-IKISEGQVEFSGNGIKLTSR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG--VRLYVSENQLKIT 293 L++G+FP+Y++V+P ++ + RAA+L +K + + Y+ + IT Sbjct: 239 LIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENMIIT 298 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + + E E L ++ G E + FN Y++DVL L+ E + + LT ++ ++ Sbjct: 299 SQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLETEEIYLSLTGPLNPGVVKPVN 357 Query: 354 SQSAAYVVMPMR 365 ++ +V+P+R Sbjct: 358 DENYLCLVLPVR 369 >UniRef50_B4VWR6 DNA polymerase III, beta subunit n=5 Tax=Cyanobacteria RepID=B4VWR6_9CYAN Length = 400 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 171/399 (42%), Gaps = 34/399 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 MK T + L L V+ + RPT P+LGN+LL+ + +SLT DL + + Sbjct: 1 MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLKADAENQRVSLTAFDLSLGLQTSF- 59 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQ----------LEGERMLVRSGRSRFSL 108 GA +PA+ F DI LPEG E + + S ++ + Sbjct: 60 NANVEADGAIAIPAKLFNDIVSRLPEGDITLEDSLSEAESDADTESLSITLTSTSGQYKM 119 Query: 109 STLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR 168 + + DFP L + + LP + + + F+ + + + L G+ + + L Sbjct: 120 RGMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSLE 179 Query: 169 TVATDGHRLAVCSM-----------------PIGQSLPSHSVIVPRKGVIELMRM--LDG 209 ATDGHRLAV ++ S + VP + + EL RM L Sbjct: 180 FAATDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGLSE 239 Query: 210 GDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFAR 269 + + +Q I G+ TS+ ++G++P YR+++P + + L A R Sbjct: 240 SSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAVER 299 Query: 270 AAILSNEKFRGVRLYVS--ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 A+L+++K V+ + + +T + A E L +G +EI FNV Y++D Sbjct: 300 IAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLIDG 359 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L AL +++ + + + V + Y++MP+++ Sbjct: 360 LKALSTSDIQFQMNAANTPVILTPLGGLKMTYLIMPVQI 398 >UniRef50_B1GZ05 DNA polymerase III beta subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZ05_UNCTG Length = 373 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 189/374 (50%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK E+E L++ +Q VS + TLP L N+L + + L+ TDLE+ + + Sbjct: 1 MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIKG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 + E G T+P+++F +I + L EI ++ + ++ ++SG+S+F+L + ++P + Sbjct: 60 EITEDGGITIPSKRFANIIKELSTDDEIEIKADETNQINIKSGKSKFNLMGISKTEYPVI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + FT+ + +++ F+ + RY LNG+ F +L VATDG RLA Sbjct: 120 PEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFILGDSKLTMVATDGRRLAY 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I Q+ IVP K V +++R+L D +R+ I N I A + D S L+ Sbjct: 180 AKTNITQAEVKGKAIVPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLLSTLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAI-----LSNEKFRGVRLYVSENQLKI 292 +G FP+Y +V+PK D ++ A + A+ LS+++ V+ Y S++ LKI Sbjct: 240 EGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQDLLKI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A++ E L++ Y EI FN ++ ++ ++ + T+S++ I Sbjct: 300 SASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSIDEYSAIFEFTNSLNPAVIYPE 359 Query: 353 ASQSAAYVVMPMRL 366 ++ VVMPMR+ Sbjct: 360 TDENYLCVVMPMRV 373 >UniRef50_A8DJY7 DNA polymerase III beta subunit n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJY7_9BACT Length = 391 Score = 343 bits (880), Expect = 8e-93, Method: Composition-based stats. Identities = 118/393 (30%), Positives = 194/393 (49%), Gaps = 31/393 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ------VADGTLSLTGTDLEMEMV 54 M+F+V + LLK L ++ + + T+PIL N+LL A L+L GTDL+ + Sbjct: 1 MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPA 113 G +PAR+ DI R LP+ A+I + +G M + RSRF L + Sbjct: 61 TSCP-ATIRHSGTALLPARRLLDIVRNLPD-ADIHFKSDGSGNMNITCERSRFRLFSPAP 118 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG--------E 165 +P+L + + ++P M+ +I F+ + ++ RY LNG+ EG Sbjct: 119 EGYPSLPE-TPALPLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDASG 177 Query: 166 ELRTVATDGHRLAVCSMP----IGQSLPSH------SVIVPRKGVIELMRMLDGGD-NPL 214 LR VATDGHRLA+ P + SLP+ S ++P+K + E+ R+ + Sbjct: 178 LLRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIARLAADTTATEI 237 Query: 215 RVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS 274 ++ +G +F S+L+ G+FP+Y V+P+N + + + L AF R +++ Sbjct: 238 AFGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGVVA 297 Query: 275 NEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 +E V+L+ +E +++I + +PE EA E L V Y G + I FNV+Y++D L Sbjct: 298 DETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAHST 357 Query: 335 NVRMMLTDSVSSVQIEDAASQ--SAAYVVMPMR 365 R D ++ +Q+ YVVMPMR Sbjct: 358 QTRFEFKDEITQIQMRPVDGDGYDYRYVVMPMR 390 >UniRef50_B2KAM5 DNA polymerase III, beta subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAM5_ELUMP Length = 369 Score = 342 bits (879), Expect = 9e-93, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 194/370 (52%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E L+ L V + R TLPIL N L++ +G + L TD+EM + + Sbjct: 1 MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+ T+P ++ DI + LP EI + + E ++ ++SG+S+F + P +++P + Sbjct: 60 EILEEGSVTIPLKEVSDILKNLPNDKEINLTVGEDNKVHIKSGKSKFWVIGTPKSEYPLI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + L ++ ++E T FS + Q+ RY LNG+L+ G + VATDG RLA+ Sbjct: 120 PEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWVKTGNKFEVVATDGRRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLD----GGDNPLRVQIGSNNIRAHVGDFIFTSK 235 I +I+P K + EL+R D+ L + + SN + ++ + + S+ Sbjct: 180 AVDTIESDTKDFKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETTYISR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L++G FP+Y +V+P + + + RA++ +NE V+ ++ N LKIT+N Sbjct: 240 LIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLKITSN 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + + ++E + V Y+ EI FN YVLDVL + E V ++ V IE+ + Sbjct: 300 SQKMDFSDE-MKVEYTAEPFEISFNPQYVLDVLKNISTEKVEFSFINAAQPVLIEEINNT 358 Query: 356 SAAYVVMPMR 365 YV+MP+R Sbjct: 359 KFKYVIMPVR 368 >UniRef50_C4V1P5 DNA polymerase III beta chain n=2 Tax=Selenomonas RepID=C4V1P5_9FIRM Length = 380 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 180/379 (47%), Gaps = 15/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T+ + L+ LQ VS L +P PIL + + +G L L T+ E+ + + Sbjct: 1 MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G +P + + R LP E I + + SG +RF+L T+ DFP L Sbjct: 60 EIRSTGTAVLPGKYLTEFARKLPAEEVSINTESSDGLAEICSGTARFTLRTMEVTDFPVL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVR---YYLNGMLFETEGEELRTVATDGHR 176 + FT+ + RL++ + F+ ++ R G E +G ++ AT+ HR Sbjct: 120 HRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVDGHKVTFAATNVHR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMR-MLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 LAV S + +I+P + + E+ R M + + + N I + TS+ Sbjct: 180 LAVKSESLETEAGQICIIIPARFLEEVTRTMTSDVPSDVNISCTYNQISISFDNIYMTSR 239 Query: 236 LVDGRFPDYRRVLPKNPD--KHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKI 292 L++G FPDYRRV+P++ + + A RA++++ +++ V+L ++ ++I Sbjct: 240 LIEGTFPDYRRVIPQDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFADGTMRI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV------SS 346 ++N+PE EAEE + G ++ I FN SY++D + +L + + L S S Sbjct: 300 SSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCILSLQGSNEQGVNLSP 359 Query: 347 VQIEDAASQSAAYVVMPMR 365 + I + A + YVV P+R Sbjct: 360 ITIREEADPNYIYVVTPVR 378 >UniRef50_Q2JU25 DNA polymerase III, beta subunit n=2 Tax=Synechococcus RepID=Q2JU25_SYNJA Length = 454 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 93/402 (23%), Positives = 178/402 (44%), Gaps = 39/402 (9%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVALV 60 FT E+ L L VS + RP LP+L N+L++ ++LT DL + + + Sbjct: 51 FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFE-A 109 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G TT+PA+ DI LP G ++ E + + S ++ L +PA ++P L Sbjct: 110 EVKGSGRTTLPAKLLSDIVSRLPSGPIGLSQVPESAAVTLTSAAGQYQLRGMPAEEYPTL 169 Query: 120 DDWQSEVE-------------FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET---E 163 + LP ++ + I T F+ + D + L G+ + + Sbjct: 170 PEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTGD 229 Query: 164 GEELRTVATDGHRLAVCSMP-------IGQSLPSHSVIVPRKGVIELMRMLDGGD--NPL 214 L ATDGHRLA+ + + +P + + E+ R+L + + Sbjct: 230 PPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKLDFTIPARTLREVERILGAQTAASAV 289 Query: 215 RVQIGSNNIRAHVG--------DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQA 266 ++ + ++ + TS+L++G++PDY R++P+ ++H+ L ++ Sbjct: 290 ELRFDRSQVQFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPLIES 349 Query: 267 FARAAILSNEKFRGVRLYVSE--NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYV 324 R + + ++ ++ +SE L+I+ P+ EE L V SG ++E+ FNV Y+ Sbjct: 350 LERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNVRYL 409 Query: 325 LDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L+ L + V + L + + + Y+VMP++L Sbjct: 410 LEALKVFHTQQVSLELNGATQPAIWKPIGATRLCYLVMPVQL 451 >UniRef50_D1PRN1 DNA polymerase III, beta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN1_9FIRM Length = 369 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 180/367 (49%), Gaps = 3/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF E+ L ++ VS + R +P+L + L+ L+LTG D+EM + + Sbjct: 1 MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIE-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 PG T + A+ + +P G + + ++ G + F + L A+D+P+L Sbjct: 60 NVLVPGETVLEAKLLLSMVSRMPAGDVRIELTDEGQAIISGGVAEFEIPALNASDYPSLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ T+P + M+ LIE T ++++ D + G LF E L VA DG+RLA+ Sbjct: 120 VTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVIEPGSLTIVALDGYRLAII 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + + +I+P K + EL++++ G D+P+++ + + S+L++G Sbjct: 180 QRDV-ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMSRLIEGD 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPEQ 299 F +Y V+PK+ + C RA+++ E+ +R+ +E+++ + P Sbjct: 239 FLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVRCQTPLG 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + +E V +G +EIGFN Y+LD + KCE + + + +S V+I + Y Sbjct: 299 KVVDEFPPVAMTGDPVEIGFNNRYLLDAMRYSKCERMVLEINGPLSPVKILPEDGKDFIY 358 Query: 360 VVMPMRL 366 +V+P+R Sbjct: 359 LVLPVRF 365 >UniRef50_UPI00016C0202 DNA polymerase III subunit beta n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0202 Length = 390 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 183/368 (49%), Gaps = 4/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L + + V R T P+L +L+ + TL+L G +LEM + + Sbjct: 23 MKFICNQNILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMGIEKTIEG- 81 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G + A+ F +I + +P+G + ++ + SG+SRF+L TL + FP L Sbjct: 82 EILENGKIAIDAKLFSEIIKKMPQGDIKMATINETQITITSGKSRFTLQTLDTSHFPTLP 141 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D + T+ Q +K LI+ T FS+A ++ R L G FE E +L VA DG +A Sbjct: 142 DVSLKQSLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEVENGQLSLVAIDGFXIAFR 201 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 ++ + S ++P K ++E+ ++L ++ + + G N+I ++ D S L++G Sbjct: 202 TISLNNKNLSIEKVIPAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVSXLLEG 261 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPE 298 F Y+ + + + + + + R+A++S E +R ++++ L IT+ N + Sbjct: 262 EFLRYKDIFSNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIITS-NTD 320 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + E +D+ +G ++I FN Y++D L ++ + + + + I S Sbjct: 321 IGNSLEEIDIILTGMPLKIAFNPRYLIDALKNIEDDEICINFLSKTAPAVIMPINSDKYR 380 Query: 359 YVVMPMRL 366 Y+V+P+R+ Sbjct: 381 YLVLPIRV 388 >UniRef50_B2A2Y7 DNA polymerase III, beta subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2Y7_NATTJ Length = 370 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 187/370 (50%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MK +++ L + LQ + + T+P L +Q +D TLS+ DLEM + ++ Sbjct: 1 MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLST 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEI-AVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + E G+ VP + FFDI + LPE +V E + + SG+ + + L ++P Sbjct: 61 -EILEQGSVVVPTK-FFDIIKKLPEDQITFSVDQENYLITIESGQVYYEIKGLDPEEYPK 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE-GEELRTVATDGHRL 177 L + + F++P+ +K++I T F+++ ++ + G+L + + +L VATD +RL Sbjct: 119 LPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKFDSDNKLDMVATDSYRL 178 Query: 178 AVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A I S S I+P+K + ++ R++ D + + + + SKL Sbjct: 179 AWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLFSKL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITAN 295 +D FP+ +V+PKN + L+ + RA++L++E V+L +SE ++IT+N Sbjct: 239 IDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEITSN 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +P + +E L + G + I N ++++VL ++ + V + T S S + I + Sbjct: 299 SPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIEEDQVELEFTGSYSPMIIRPREND 358 Query: 356 SAAYVVMPMR 365 ++++P+R Sbjct: 359 QYFHLILPVR 368 >UniRef50_C0GI72 DNA polymerase III, beta subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI72_9FIRM Length = 367 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 171/370 (46%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV + L + LQ + + T+P+L +L Q T++LT T+LE+ + + Sbjct: 1 MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGIRTSFPVP 60 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G +PA+ +I R LP + + V E ++SG+S F L L ++P Sbjct: 61 D-QEKGEVVLPAKA-VEIIRKLPGDTVSLTVNEENFLTEIKSGQSEFQLYGLSTEEYPAF 118 Query: 120 DDWQ---SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 D + + +R + T F+ + + + G++F + L ++D R Sbjct: 119 ADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLSSSDTFR 178 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 LA S + +VP K + E++R+L ++ +++ + N + + +S+L Sbjct: 179 LATTSCRVQNQGADGVFLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIKLSSRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +D FP+ RV+P+ A RA++LS VRL + E L I A++ Sbjct: 239 LDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLVIRASS 298 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + +E + V SG +EI N ++LD+L + + + LT++ + D+ Q Sbjct: 299 K-FGKTQEHVPVELSGEGLEISLNSRFILDMLKVHEGDQCILELTNANKPCILRDSLYQE 357 Query: 357 AAYVVMPMRL 366 Y+V+P+++ Sbjct: 358 YLYLVLPIKI 367 >UniRef50_A4T4T7 DNA polymerase III, beta subunit n=20 Tax=Corynebacterineae RepID=A4T4T7_MYCGI Length = 398 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 29/389 (7%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF + RE + V+ L RPT+P+L +LL +D L+++G D E+ ++ + Sbjct: 13 KFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIP-AE 71 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 PG+ V R DI R LP + V +EG R+ + G +RFSL T+ D+P L Sbjct: 72 IASPGSVLVSGRLLSDIVRSLP-AKPVDVSVEGTRVSLTCGSARFSLPTMAVEDYPTLPT 130 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 E + I + D L G+ E GE++ ATD RLAV Sbjct: 131 LPDETGV-VSADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAATDRFRLAVRE 189 Query: 182 MPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIG-------SNNIRAHVGDFIF 232 + +VP K + E + G + + +G + Sbjct: 190 LTWSAGAAGVEAAVLVPAKTLAEAAKAGTDG-TEVHLALGQGPTVGKEGLLGIRSKGKRS 248 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 T++L+D FP +R++LP G L +A R A+++ ++ VR+ +++ L++ Sbjct: 249 TTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVA-DRGAQVRMEFADDVLRL 307 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A + AEE L V +SG + I FN SY+ D L +L E V T + A Sbjct: 308 SAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHAERVTFGFTTPSRPAVLRPA 367 Query: 353 ASQ---------------SAAYVVMPMRL 366 Y++MP+RL Sbjct: 368 GDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 13/179 (7%) Query: 124 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMP 183 S+++F L + + ++ + L G+L E L D A +P Sbjct: 10 SDLKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIP 69 Query: 184 IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD-GRFP 242 + P SV+V + + +++R L P+ V + + G F+ + +P Sbjct: 70 AEIASPG-SVLVSGRLLSDIVRSLPA--KPVDVSVEGTRVSLTCGSARFSLPTMAVEDYP 126 Query: 243 DYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF-----RGVRLYVSENQLKITANN 296 LP PD+ DL +A + A+ + G+R+ +S ++ + A + Sbjct: 127 T----LPTLPDETGVVSADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAATD 181 >UniRef50_Q2RMJ6 DNA polymerase III, beta subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMJ6_MOOTA Length = 374 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 103/374 (27%), Positives = 181/374 (48%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + L+ +Q+V + T + +LLQ + TL+L GTDL++ ++ V Sbjct: 1 MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G +PAR F ++ R LP + L+ + + +S+ L+++ A+ FP L Sbjct: 60 EVIEEGELLLPARIFTEMVRRLPPTSLSLQSLQDNTVEIAYQQSKVQLNSIDASQFPLLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE--LRTVATDGHRLA 178 + FT+ +K I + + D+R NG+L+E E E VATD HRLA Sbjct: 120 PVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTHRLA 179 Query: 179 VCSM--PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 V S + + +VP + + EL R+L G D +++ IG + I A ++L Sbjct: 180 VYHGQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLYTRL 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG----VRLYVSENQLKI 292 ++G+FP Y++V+P + +E L RA +L+ ++ + + L V E LKI Sbjct: 240 LNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKSLKI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 T+ E EE L +G +E+ N Y+L+ L + ENV + L + V + A Sbjct: 300 TSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETLRVIDTENVILELLAPLKPVVVRPA 359 Query: 353 ASQSAAYVVMPMRL 366 ++ +++P+R+ Sbjct: 360 GQENYFCLILPVRI 373 >UniRef50_A6G5S7 DNA polymerase III, beta subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5S7_9DELT Length = 372 Score = 339 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 179/373 (47%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 M+F +++ L L S R T+P+L N+LL+ D L TD+ + + +V Sbjct: 1 MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVP- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + PG+ T+ R + R LP GA L+ + + RS F L +P DFP L Sbjct: 60 CKVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDNSWAQILAKRSEFKLMGMPEGDFPEL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D E T+P + LIE T FS++ + R LNG + E++G+ V+TDGHRL Sbjct: 120 PDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLESDGQTATMVSTDGHRLTK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ + +IVPRKG+ E+ ++L+ + + + + + + KL + Sbjct: 180 FSLELEGLALPREIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSVKLNNV 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FP +++V+PK+ + L A +AA+++ EK V++ + + L++ A+NPE Sbjct: 240 TFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNADNPEL 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ---- 355 L V Y G+ + GFN +Y+++ L AL + + + + + A Sbjct: 300 GAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLDFQGELDPCVLRPAPDDEGND 359 Query: 356 --SAAYVVMPMRL 366 VVMPMR+ Sbjct: 360 PVDFLAVVMPMRI 372 >UniRef50_Q1V1G8 DNA polymerase III n=5 Tax=root RepID=Q1V1G8_PELUB Length = 370 Score = 339 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 205/370 (55%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V ++ L + L G + R TLPIL N+LL ++ L++T TDL++ + ++ V Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 + E G TT + +DI R G +I + L ++ V S +S F+L+ + A++FP Sbjct: 61 EVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDVSKLQVESEKSVFNLNCISASEFPLT 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET----EGEELRTVATDGH 175 D+ ++ EF++ + +L+ +FS+++ + R+YL+G+ F + L ATD H Sbjct: 121 DENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 R+++ + + Q + +I+P+K + +L +L+ D +++ + I+ + + I SK Sbjct: 181 RMSISKIRLDQQVDFEPIILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISK 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG+FP+Y +V+PKN K LE L + R A +S +K GV+ +S++ L ++ N Sbjct: 241 LIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVN 300 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 N + +E L V + ++EI FN Y++DV L + + + D+ S I+D Sbjct: 301 NTNSGDGKESLTVKFD-HDLEISFNSRYLIDVAAQLDGDKIEIFFNDTGSPALIKDPGDF 359 Query: 356 SAAYVVMPMR 365 + +VVMPM+ Sbjct: 360 DSIFVVMPMK 369 >UniRef50_O84078 DNA polymerase III subunit beta n=14 Tax=Chlamydiales RepID=DPO3B_CHLTR Length = 416 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 181/367 (49%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R L +++V + +P+L ++L++ + L T TDL + V Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVK-A 109 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +E G+ T+P+R+FF + R L E GE + SG S F L ++ DFP L Sbjct: 110 KVYESGSVTIPSRRFFQLIRELTEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPMLP 169 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D Q+ + FTL +K + + T F+++ ++ RY L G+L + V TDG RLA Sbjct: 170 DMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIANGTMTVVGTDGKRLAKI 229 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I S I+P K V E++RM D + + I G+ + +KL+ G Sbjct: 230 DTEISLDPSFSGDYIIPIKAVEEIIRM-SSEDVQSTIFLDQTKIAVECGNTLLVTKLLSG 288 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPD+ V+ + L+ + L + A+ +NE V+ S +L +TAN + Sbjct: 289 EFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTANCTKV 348 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + + V Y+G +EI FN + LD+L + E V++ ++DS + I D S + + Sbjct: 349 GEGKVSMAVNYTGETLEIAFNPFFFLDILKHSRDELVQLGISDSYNPGIITD--STRSLF 406 Query: 360 VVMPMRL 366 V+MPMRL Sbjct: 407 VIMPMRL 413 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 101/239 (42%), Gaps = 21/239 (8%) Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +L D++ ++F + + + LI+ Q + L +L E+ +EL ATD L Sbjct: 43 DLHDYRKIMKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATD---L 99 Query: 178 AVCSMPIGQS--LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 V + + ++ S SV +P + +L+R L + + G G F + Sbjct: 100 TVSTRCVVKAKVYESGSVTIPSRRFFQLIRELTEANIEVAAHSGE-MATITSGSSCF--R 156 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAI-LSNEKFR----GVRLYVSENQL 290 L+ D+ + + LK F R + +S E+ R GV L ++ + Sbjct: 157 LLSMGKEDFPMLPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIANGTM 216 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + + ++ A+ +++ ++ F+ Y++ + A++ E +RM D S++ + Sbjct: 217 TVVGTDGKR-LAKIDTEIS-----LDPSFSGDYII-PIKAVE-EIIRMSSEDVQSTIFL 267 >UniRef50_Q2S6M1 DNA polymerase III, beta subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S6M1_SALRD Length = 377 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 183/375 (48%), Gaps = 11/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT LL+ L V G + + T+PIL +L + TL L+ TDLE+ ++ V V Sbjct: 1 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVP-V 59 Query: 61 QPHEPGA-----TTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 Q + G VPA++ D R LP+ + + + + + + +D Sbjct: 60 QFEKNGTPESTPIAVPAQRLIDTLRALPDLPIEFAADSDFEIRMDTDQGHYKMVGHDGSD 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L + + + E + + R I+ T F+++ +R + G+ F+ EE VATDGH Sbjct: 120 YPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSVVATDGH 179 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL ++P ++ S IVP K R+++ D V++ +++ G+ ++ Sbjct: 180 RLVKLTLPELRADTSADFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGESRVLAR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D +P+Y+ V+P D++L + + A R + S+ +RL ++ + + I+A Sbjct: 239 LIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTVTISAE 298 Query: 296 NPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI---ED 351 + E EAEE + Y MEIGFN Y+ +VL+ ++C+ V L+ + + E Sbjct: 299 DVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVECDEVVFELSSPNRAGIVLPREG 358 Query: 352 AASQSAAYVVMPMRL 366 A + ++MP+ L Sbjct: 359 ADDEDILMLIMPVML 373 >UniRef50_C9XIB4 DNA polymerase III, beta chain n=6 Tax=Clostridium RepID=C9XIB4_CLODC Length = 402 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 179/366 (48%), Gaps = 4/366 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 K ++ L + + G+ T+ +L +L+ +G L LTG D E+ + V + Sbjct: 36 KIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQ-AE 94 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 E G V AR F DI R LP+ + + SRF + A +FP L + Sbjct: 95 IIEKGDVVVDARLFGDIIRKLPDSFVEIETDSENNIYINCVNSRFKIKGYAAKEFPKLPE 154 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 E +++PQ +K +I+ T F+++ + L G L E L VA DG+RLAV S Sbjct: 155 LNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNLVAIDGYRLAVKS 214 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRF 241 + + VI+P K +I++ +L G DN ++V N + D ++L++G F Sbjct: 215 CSVDSLTENIKVIIPGKTLIDVNSLLSGEDN-VKVGFNEKNAIFIINDTKIITRLLEGDF 273 Query: 242 PDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQE 300 DY+++LP+ + ++ L + RA++LS +EK ++L + + + IT+ N E+ Sbjct: 274 IDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITS-NTEKG 332 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 E +++ G ++I FN Y ++ L + E + + T +V+ I+ + Y+ Sbjct: 333 NVYEEVEIDLDGDYLDIAFNSRYFIEGLKNIDNEEIFIEFTTNVNPCIIKPTDDVNYIYL 392 Query: 361 VMPMRL 366 ++P+R+ Sbjct: 393 LLPVRI 398 >UniRef50_D1VRK9 DNA polymerase III, beta subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRK9_9FIRM Length = 365 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 187/367 (50%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+ L K + V + R T+ IL +L++ D +SLT TD E+ +V + + Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V R F +I R L +I +++E M ++ G S F++S A +P L Sbjct: 61 -VEEEGQIVVNGRLFGNIIRKLNND-DIFIKVENFNMNIKCGNSEFNISVQNAEGYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + F+L +K I T F+++ + R G+ + + + VA DG R+A+ Sbjct: 119 NIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDYINFVALDGFRMAIM 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S S IVP + +EL ++LD + + + SNNI G+ +F S L+ G+ Sbjct: 179 KINKNTGFTS-SAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYSTLISGK 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPEQ 299 F DY +L + + AF RA++L+ E + V + ++ ++ I + + E Sbjct: 238 FFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDSKS-EI 296 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E+++ + G ++I FN Y+L+ + ++ +N+ + LTD ++ I++ ++ Y Sbjct: 297 GNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNIILNLTDFINPCIIKEEDNEDYIY 356 Query: 360 VVMPMRL 366 +V+P+RL Sbjct: 357 LVLPVRL 363 >UniRef50_D1N691 DNA polymerase III, beta subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N691_9BACT Length = 364 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 192/366 (52%), Gaps = 5/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV RE L K LQ+V +G R LP+LGN+++Q +G L+LT TDLE+ + +V V Sbjct: 1 MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TT PARK + + + + + ++ G S F+L LPAADFP Sbjct: 61 -VEEAGVTTAPARKLASLVGCFVGTDVVFEVDDKDHIKIKCGTSHFTLLGLPAADFPAAV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++++ E + ++ KR+I + ++++ D R L G+L + VATDG RLA+ Sbjct: 120 EFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTLVATDGKRLAMQ 179 Query: 181 SMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I+P K E R+L+ GD + +++G G F T+KL++G Sbjct: 180 EKTPEAIEGGDGDAIIPLKAASEARRLLE-GDAVMTIRLGDKQCTFVAGGFELTTKLIEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+YR+V+P + + +E + +++ ++ + L NQL + A++ E Sbjct: 239 TYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQASSAEV 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E +++++ + G E+ FN +Y+ D L + +RM + D ++ V I S+ Y Sbjct: 299 GEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADADKIRMKINDPLNPVAI--EGSEGFLY 356 Query: 360 VVMPMR 365 V+MP+R Sbjct: 357 VIMPIR 362 >UniRef50_C8VV98 DNA polymerase III, beta subunit n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VV98_DESAS Length = 367 Score = 336 bits (862), Expect = 9e-91, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 180/369 (48%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +++LL +Q V + + LPIL +L + D TL + TDLE+ + + V Sbjct: 1 MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG--ERMLVRSGRSRFSLSTLPAADFPN 118 + E G +P++ DI R LP+ I + + ++ S+ ++ A +FP Sbjct: 60 KVIETGEIVLPSKYIIDIIRRLPD-TVIEFESNDYLNSITIKYKNSQANIHGFAADEFPM 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L F + + K+++ T F+ + R G+ F+ +E + VATD HRLA Sbjct: 119 LPPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKMVATDTHRLA 178 Query: 179 VCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + + +IVP K + EL+++L+ D +++ + N I + + S+L Sbjct: 179 MITEHLPLIKQELPGIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINIISRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 + G++P+Y V+PK+ ++ Q+ RA++LS+ + +R+ + + ++N Sbjct: 239 IKGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIVISSN 298 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E E + V + G ++I FN Y++D L A+ E + + L+ ++ + ++ Sbjct: 299 NEAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDSEEIYLELSGPINPCLLR-TEDRN 357 Query: 357 AAYVVMPMR 365 +++P+R Sbjct: 358 YLSILLPVR 366 >UniRef50_A5FGC6 DNA polymerase III, beta subunit n=12 Tax=Bacteroidetes RepID=A5FGC6_FLAJ1 Length = 372 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 180/371 (48%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V +LLK LQ + + TLPIL N L ++ + L+++ +DLE M A ++ + Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLS-I 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ VPA+ +I + PE + + + S +++L+ +FP Sbjct: 60 DSTSKGSVAVPAKLLLEILKTFPEQPLTFTVEDNNTVEISSNSGKYALAYAAGEEFPKSV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + +P + + T F+ + D+R ++G+ F+ E L VATD H+L Sbjct: 120 NLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTFVATDAHKLVKY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + ++ I+P+K + L +L D ++++ +N ++I +L+DG+ Sbjct: 180 ARADVKASQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMCRLIDGK 239 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +P+Y V+PK L L + R AI SN+ +RL ++ +L ++A + + Sbjct: 240 YPNYEAVIPKENPNKLLIDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSAEDIDYS 299 Query: 301 -EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED----AASQ 355 +AEE L Y G +++IGFN +++++L L+ + + + ++ + + + Sbjct: 300 NKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIMLEMSLPNRAGILTPADGLEEGE 359 Query: 356 SAAYVVMPMRL 366 + +VMP+ L Sbjct: 360 TVTMLVMPVML 370 >UniRef50_Q1NPP3 DNA-directed DNA polymerase n=2 Tax=Deltaproteobacteria RepID=Q1NPP3_9DELT Length = 376 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 96/374 (25%), Positives = 183/374 (48%), Gaps = 12/374 (3%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V R L L + G + TL +L N+LL+ + L+LT TDLE+ + RV + Sbjct: 5 FNVPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVP-AEV 63 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 PG T+PARK F++ R + + R+ + +G S L+ + A +FP Sbjct: 64 TSPGEITLPARKLFELVREAQADQIEIAEQDNTRVKINAGNSDCRLAGMAADEFPAFPPH 123 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFET----EGEELRTVATDGHRL 177 Q + + ++ LI+ T +++AH+ + + L G+L E +G LR V++DGHRL Sbjct: 124 QDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDGHRL 183 Query: 178 AVCSMPIGQSLPSHS----VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 A+ + L + ++VPRKG+ E+ ++ + G + + I + G++ Sbjct: 184 AMMESKVEADLGPLAMDRVILVPRKGMQEVRKLCESG-GQIALAIEEKQLVVKAGEYTMV 242 Query: 234 SKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 ++L+ G FPDY+ ++ + + + + L + R I + +++ V + +++ + Sbjct: 243 ARLMSGDFPDYKSIIQVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENSRMTL 302 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 ++ N + A+E + +TY G M +GFN Y + L + E V+ + S ++ Sbjct: 303 SSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEALQVMDSEMVKAYINAEDSPCLLQGD 362 Query: 353 ASQSAAYVVMPMRL 366 V+MPM++ Sbjct: 363 KDPGYLSVIMPMKI 376 >UniRef50_C6XEX5 DNA polymerase III subunit beta n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XEX5_LIBAP Length = 385 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT--VATDGH 175 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 Query: 176 RLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLAV + I + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 Query: 350 EDAASQ---------SAAYVVMPMRL 366 +A YV+MPMR+ Sbjct: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 >UniRef50_B5YGU0 DNA polymerase III, beta subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGU0_THEYD Length = 368 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 189/372 (50%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M ++++ + + L ++ + + +P+L + L+ V + + + TDLE + + Sbjct: 1 MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLETAVKQPLE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G +PARKF++I + L E EI + + + ++SGRS F L++L ++FP Sbjct: 60 EVLEIGKACIPARKFYEIVKELDEDIEIMLL--EQWIKIQSGRSNFRLASLDPSEFPVWP 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRLAV 179 + L + + IE T ++ D RY LNG+LF+ E E V TDGHRLA Sbjct: 118 QIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQIKEPAEFNVVGTDGHRLAH 177 Query: 180 CS---MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 I VI+ +K + EL + L + + + IG ++ + F +++ Sbjct: 178 FKATVEDISSIEGEKKVILSKKSLNELRKFLSDTE-TVSIHIGKTHVMCEIDGINFLTRM 236 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G +PDY V+P++ DK + L + R ++LS E+ V+ ++ L I++++ Sbjct: 237 IEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLIISSSD 296 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 PE EA + L V Y G IGFN Y+++ L + + ++ +++ +V I D + S Sbjct: 297 PEIGEARDELTVDYQGEPFIIGFNARYLIEALERITSDKAKITMSEPDKAVYITDGEAAS 356 Query: 357 AAY--VVMPMRL 366 Y VVMP+RL Sbjct: 357 FVYECVVMPLRL 368 >UniRef50_Q6MAH0 Putative DNA polymerase III, beta chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAH0_PARUW Length = 403 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 179/373 (47%), Gaps = 9/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L + ++ + +PT+PIL N L++ + L LT TDL + + Sbjct: 30 MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTE-A 88 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G+TT+PA++ + R L E + +G SRF L+ + D+P+L Sbjct: 89 KILEEGSTTLPAKRLSQLVRELTAVNVEISTNTNEITTIIAGSSRFKLNGMSKTDYPSLP 148 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D F + Q+ +K L+ T F+++ +D RY L G+ + + + TDG RLA Sbjct: 149 DLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITFIGTDGKRLARA 208 Query: 181 SMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I S I+P K V E+++ L + +++ + ++ + +KL+ G Sbjct: 209 KGVIDNDPSFSGQAIIPIKAVDEILKNLTD-EGEVKISLMADKVAIEANQMRILTKLLSG 267 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +PD RV+P+ + + + L + ++ + + VR +LK+TAN + Sbjct: 268 DYPDVNRVIPEKSEIIVTLHREELSSLLRQISLFTADHNHSVRFTFIPGELKLTANTMDI 327 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA------ 353 E + V Y G ++EI FN + +D+L K E V M LTD+ + I D+A Sbjct: 328 GEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKGETVIMGLTDAYNPGIITDSAELANSL 387 Query: 354 SQSAAYVVMPMRL 366 S +V+MPMRL Sbjct: 388 DASPLFVIMPMRL 400 >UniRef50_B8GBZ8 DNA polymerase III, beta subunit n=5 Tax=Chloroflexaceae RepID=B8GBZ8_CHLAD Length = 378 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 179/376 (47%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRP-TLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK T ++ L + L +S + G+ TLP+L N+LL +G L LT T+LE+ + + Sbjct: 1 MKLTCMQDDLKRGLAAISHAVAGKSATLPVLANVLLATDNGRLKLTATNLEVGINRWI-G 59 Query: 60 VQPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + GA VPA+ D+ GLP + + + + + + V GR ++ + A +FP+ Sbjct: 60 ANIAQAGAVAVPAKLLADVVGGLPNDTVTLTLDPKTQTLRVECGRFVSNIKGVDADEFPS 119 Query: 119 LDDWQSEVE-FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + +LP + IE F+ A + R L G+L T +L VA DG RL Sbjct: 120 LPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVLVRTRDRQLTLVAADGFRL 179 Query: 178 AVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQI--GSNNIRAHVGDFIFTS 234 A+ ++P+ +++ + ++P + + EL R++ + + + G +++ H + S Sbjct: 180 AMRTIPLAETVAHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTENTEVVS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE------N 288 +L++GRFPD+ R++P+ L +A A+ ++ V+L + Sbjct: 240 RLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAGEMGPG 299 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 ++ ++AN+ E + LD + +G I NV ++ D + A+ + + + S Sbjct: 300 RIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGSNQIAFEMQSAQSPAV 359 Query: 349 IEDAASQSAAYVVMPM 364 + ++VMPM Sbjct: 360 FKPVGHDGYIHIVMPM 375 >UniRef50_Q7VQU9 DNA polymerase III beta-subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VQU9_BLOFL Length = 367 Score = 334 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 234/367 (63%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F VER + L++V + R LPIL ++LL V D L +T TDLE+E+VA + L Sbjct: 1 MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + + TVP KFF+IC+ LPE ++I + L+ R L+ SG S F LS LP DFP + Sbjct: 61 KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQENRFLISSGCSNFVLSILPVLDFPKVK 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++E T+PQ +K++I+ TQFSM +QD RYYLNG+ +TE + V+TDG+RL++C Sbjct: 121 KYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGICLKTEKNTISMVSTDGYRLSMC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + LP SVI+PRKGV+E+ +L G +++Q+ +NNI + +++ SKL+D Sbjct: 181 EVTSKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIRSKLIDSE 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY+++ P E +LK A RA+ILSNEK R V Y++ NQLKIT +N ++E Sbjct: 241 FPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKITTDNFKEE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED-AASQSAAY 359 +EEIL + +S + I FNV Y+LDV+N + + ++ L ++VSSVQIE + Y Sbjct: 301 TSEEILKILFSYENISISFNVDYLLDVINVVDSQMLKFSLINTVSSVQIEGVPKYYGSIY 360 Query: 360 VVMPMRL 366 ++MP+++ Sbjct: 361 IIMPVKV 367 >UniRef50_C1D6W8 DnaN n=29 Tax=Betaproteobacteria RepID=C1D6W8_LARHH Length = 377 Score = 334 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 151/352 (42%), Positives = 221/352 (62%), Gaps = 2/352 (0%) Query: 1 MKFT-VEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 M+ +R+ LLKPLQ V+G + R TLPIL N+L++ + TL+ TDLE+++ Sbjct: 1 MQILQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPE 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 T A+KF DI R +P+ + + E R+ V++G+SRF+L +LPA DFP L Sbjct: 61 PIAGPDFRLTTSAKKFSDILRAIPDRTTVTLDHEDGRLTVKAGKSRFNLQSLPADDFPLL 120 Query: 120 -DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 ++ F LPQ K L+ Q++MA QD+RYYLNG+L T+G +++ VATDGHRLA Sbjct: 121 TQSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKLVATDGHRLA 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 M + LP+ VI+PRK + EL ++L D+ + + + +N +R G + SK+VD Sbjct: 181 FAQMTLDTPLPAAEVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVIVSKVVD 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+P + DK G L+QA ARAAIL+NEKFRGVRL + +L+I NN E Sbjct: 241 GKFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRIQCNNSE 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 QEEAEE L++ Y G+ +EIGFN++Y+ DVL AL + +++ D+ S + Sbjct: 301 QEEAEEELEIAYGGSGLEIGFNITYLQDVLAALHVDTLQLAFGDANRSALVT 352 >UniRef50_C7N0K1 DNA polymerase III, beta subunit n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0K1_SLAHD Length = 365 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 166/368 (45%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ + L L V+ R TLP+L + + +L L TDL+ + VA + Sbjct: 1 MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G +P + DI + LP+ A I V ++ V ++ F+L TL DFP+ Sbjct: 61 -VEDEGMCVIPQKLLSDIVKNLPDAA-ITVDVDDSEATVSCDKTSFTLHTLIPDDFPSFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + T+P ++ + + R L G+L T E + VATD +RLAVC Sbjct: 119 EVNIDNQITVPFKQFSSAVKKVAKAASKDQSRAVLTGVLLRTTPEGMSIVATDSYRLAVC 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ + +V V+E+ L + + + +N + GD + ++ ++G+ Sbjct: 179 NLKFDSAGEEFEALVTSSFVLEVAS-LPEVQETIDICLSANQVMFRFGDTVMVNRRIEGK 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE--NQLKITANNPE 298 +P Y +++ + L A R ++S+ ++ ++E ++ N+ E Sbjct: 238 YPAYEKLIAGSYTTKTCYTTSALITAVKRVGLMSSAAS-PIKFDINEATKNTVLSTNSQE 296 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 A E++ +G +EI N Y++D L+++ ++V S+ + Sbjct: 297 IGTASEVVSCEVNGENVEIALNHQYIIDGLSSISTDHVFFETQGSMKPGVFRSGEGEDFL 356 Query: 359 YVVMPMRL 366 Y++MP+RL Sbjct: 357 YLLMPVRL 364 >UniRef50_Q47TU0 DNA polymerase III beta subunit family protein n=2 Tax=Streptosporangineae RepID=Q47TU0_THEFY Length = 379 Score = 333 bits (854), Expect = 8e-90, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 165/382 (43%), Gaps = 20/382 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD---GTLSLTGTDLEMEMVARV 57 MKF V+R+ + + L RP +P+L + L+VAD TL L+G D E+ A V Sbjct: 1 MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQASV 60 Query: 58 ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 V E G+ VP R +I R LP + +EG R L+ G +RF+L TLP D+P Sbjct: 61 D-VHAEEAGSVLVPGRLLAEIVRTLPPHP-VEFHVEGSRALLTCGNARFTLLTLPLEDYP 118 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + + P + S + D L G+ G+ + ATD +R+ Sbjct: 119 TLPAMPRTI-GSAPADVFATAVRQVLPSTSRDDTLPMLTGVHLTFRGDTILLAATDRYRI 177 Query: 178 AVCSMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN------IRAHVGD 229 AV M + S +VP + + + R L GG+ + + + I Sbjct: 178 AVREMWWKPEEVDIDTSALVPARTLGDFSRSLTGGNVDIALSTSDSRGAGEGMIGFEHDG 237 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 T++L+D F Y P + L +A R A+++ ++ VRL + ++ Sbjct: 238 KRTTTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVA-DRSTPVRLSFTSSE 296 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + + A + + +A E L+V + G M I FN Y LD L ++ E + I Sbjct: 297 VVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVETERAFLRFVAPTRPAVI 356 Query: 350 -----EDAASQSAAYVVMPMRL 366 ++ Y+VMP+RL Sbjct: 357 TGTPAKEGGKPDFRYLVMPLRL 378 >UniRef50_B8E2I1 DNA polymerase III, beta subunit n=2 Tax=Dictyoglomus RepID=B8E2I1_DICTD Length = 367 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 180/370 (48%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ++E L K LQ V + + T+PIL + ++ + TL L G +LE+ + + ++ Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG +PA F D+ LPE E R ++ +G S + +FP ++ Sbjct: 61 -VEEPGEVCLPASLFIDVIGKLPEVTLEIHVNERNRAVIHAGYSDIEIQGESTEEFPKVE 119 Query: 121 DWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E + + + I+ T F+ A +++ L G+LFE + +L VA DGHRLA+ Sbjct: 120 IGNIGEYHASFDRILFAKAIKQTIFAAAEDEIKQVLTGVLFEGKEGKLNMVAVDGHRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 ++ I + +IVP K + E +++ D+ + + N + + G+ F S+L+ Sbjct: 180 KTLEIEKDFAP--IIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVFNCGEIYFISRLLQ 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKITANNP 297 G+FP Y +++P + +A R + + ++ V++ +S ++ I+ Sbjct: 238 GQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKISLSSEEVVISTLPS 297 Query: 298 EQEEAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E+ A+E+L +EIGFNV Y++D L+ + V M T + I ++ Sbjct: 298 ERGFAKEVLPAEVEIDGNLEIGFNVEYLMDPLDNADWDEVVMRFTSDLGPALITSPEDEN 357 Query: 357 AAYVVMPMRL 366 Y++MP+RL Sbjct: 358 YTYILMPVRL 367 >UniRef50_Q50790 DNA polymerase III subunit beta n=27 Tax=Corynebacterineae RepID=DPO3B_MYCTU Length = 402 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 169/390 (43%), Gaps = 30/390 (7%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F + RE + V+ L RP +P+L +LL +D L+++G D E+ A+V + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV-GAEI 73 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 PG+ V R DI R LP + V +EG R+ + G +RFSL T+P D+P L Sbjct: 74 VSPGSVLVSGRLLSDITRALP-NKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 E LP I + D L G+ E GE + ATD RLAV + Sbjct: 133 PEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVREL 191 Query: 183 PIGQSLPSHS--VIVPRKGVIELMRM-LDGGDNPLRVQIG-----SNNIRAHVGDFIFTS 234 S P V+VP K + E + + G D L + G + T+ Sbjct: 192 KWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTT 251 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+D FP +R++LP L +A A+++ ++ VR+ ++ ++++A Sbjct: 252 RLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGSVRLSA 310 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + AEE L V Y+G + I FN +Y+ D L++L+ E V T + + + Sbjct: 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 Query: 355 Q------------------SAAYVVMPMRL 366 Y++MP+RL Sbjct: 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400 >UniRef50_C9RQU7 DNA polymerase III, beta subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU7_FIBSS Length = 373 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 186/372 (50%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+++ L LQ + + T+ IL N L++ L ++ TDL++ + +V V Sbjct: 1 MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR---SGRSRFSLSTLPAADFP 117 Q GA + ARK FD + L + + + + + LV+ S R + S+ A DFP Sbjct: 60 QGERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYLVKIQWSERGKASIIGFDANDFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + ++ + + + L E T F+ + R LNG+ E + ++ VATDGHRL Sbjct: 120 PFPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVFLEAKDGKISMVATDGHRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 ++ + S+ VI+P K + ++ M GD+ + V+ + +I + G SKL Sbjct: 180 GRAAIDQEGAELSNGVIIPHKALQHILHMAK-GDSTVEVRTSATHILFNTGSIQVISKLY 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G +P YR V+P+ ++ +A + ++N + R +RL N L+++A +P Sbjct: 239 EGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILELSATDP 298 Query: 298 EQ-EEAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA-AS 354 + ++ E L +T++G IGFN ++ ++L K E V M + + + + IE + Sbjct: 299 DVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKSEEVIMKMNNPLGACIIEPVGEN 358 Query: 355 QSAAYVVMPMRL 366 + ++++MP L Sbjct: 359 MNFSFLLMPTHL 370 >UniRef50_Q2LYA2 DNA polymerase III, beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYA2_SYNAS Length = 372 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 192/374 (51%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++R+ L +Q+ G + + T+PILGNLLL+ D + + TD E+ +VA Sbjct: 1 MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNL 119 Q GA T+ A+K F++ R + +G I + ++ + S ++ + + + A +FP + Sbjct: 60 QIISSGAITLSAKKLFEMIREI-QGDSIHFSCDDHDQITLSSQKAVYRIPGISADEFPAV 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE----LRTVATDGH 175 ++ + +P + +K LI F++++ + R L G L E E E LR VATDGH Sbjct: 119 AYDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDGH 178 Query: 176 RLAVCSMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 RLA I + P +I+PRKG+ E+ +++D + + + + Sbjct: 179 RLARSYEVIEGNSPFTLEKGIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTANTLL 238 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 L+D +PDY RV+P + DLL R ++S E++ GV L ++ N++ + Sbjct: 239 KVSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNRMIM 298 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + NP+ EA + L+V Y G E+++GFNV Y++D + ++ E V + + I Sbjct: 299 NSTNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIREEEVLFDIGSFMKPSMIMPV 358 Query: 353 ASQSAAYVVMPMRL 366 + VVMP++L Sbjct: 359 HNDRFLCVVMPLKL 372 >UniRef50_C8NI23 DNA polymerase III, beta subunit n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NI23_9LACT Length = 385 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 178/382 (46%), Gaps = 18/382 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V R+ LK L V + + T+PIL + L ++ L+LTG+D E+ + + + Sbjct: 1 MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60 Query: 61 Q------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 EPG+ +PAR F +I + LP + + + +G + F+L+ L A Sbjct: 61 DEELQLTVQEPGSIVLPARFFGEIVKKLPLNLFSIETNDQLQATITAGSASFTLNGLSAV 120 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D+P L + + T+P +++I T +++ + R L G+ + +L+ VATD Sbjct: 121 DYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGIHMVIKDNKLKAVATDS 180 Query: 175 HRLAVC----SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 HRL+ MP G + + +P K ++EL R++DG + + I N I Sbjct: 181 HRLSQRIIPLQMPAGSDALTFEMTLPGKTLLELSRIIDGLE-TIDFAITDNQILFQTETL 239 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQ 289 F S+L++G +PD R++ + + L A RA+++S +K L +S + Sbjct: 240 SFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKNNIATLTLSPER 299 Query: 290 LKITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 + +T +PE EE + V + GA +EI FN Y+ + L + ++ Sbjct: 300 ILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEALKLFGSSEAVINFLEANRPFT 359 Query: 349 IEDAAS-----QSAAYVVMPMR 365 ++ S +V P+R Sbjct: 360 LKLKEDHSGIPHSFIQLVTPVR 381 >UniRef50_A8RAI6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAI6_9FIRM Length = 372 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 174/371 (46%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M F + + + L S + LP + + + + LTG+D ++ + + Sbjct: 1 MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60 Query: 59 ---LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 +++ E G+ + A+ +I R ++G + + F ++ + A + Sbjct: 61 EDCVLEIKEMGSIVIEAKYILEIVRKTDADIIEFEMIDGSLTKISGNSAEFRINGMKAIE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + + F L + +K++I T F+ + ++ R L G+ F EG EL VATD + Sbjct: 121 YPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHCEGNELHCVATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA ++ + + L + +V +P K + E+++ L+ G+N + + + + +GD I ++ Sbjct: 181 RLARKTVELEEEL-NFNVTIPSKSLQEVLKTLE-GENEVEIAVNDKKAQFIIGDTIVQTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG +P+ R++P D L L A RA+ + N+ ++ +SE + +++ Sbjct: 239 LIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAECVLSSK 298 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E + E+L ++ G +EI N YV + + AL V+ L + I Sbjct: 299 SIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAIRALGGSLVKFSLCGEMKPFVITSLED 358 Query: 355 QSAAYVVMPMR 365 +V+P+R Sbjct: 359 DKILQLVLPVR 369 >UniRef50_A8F4G9 DNA polymerase III, beta subunit n=7 Tax=Thermotogaceae RepID=A8F4G9_THELT Length = 367 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 168/366 (45%), Gaps = 3/366 (0%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + + VS + + PI+ +L ++ L TDLE + AR+ + Sbjct: 3 RLKTNVGEFTSKISIVSKTIPSKTIKPIMACILFDISHDGTFLHATDLETGVKARMES-E 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G V A+ ++I R LP E+ ++ M + GRS+F L T+ DFP + Sbjct: 62 ADGEGKFAVDAKTVYEIVRTLPNEEEVLLEFSSNLMTLECGRSKFRLPTMDPGDFPEISL 121 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 L T+ +IE F A + LNG+ +E LR VA+DG RLA+ Sbjct: 122 TTEGNTLMLDAKTINDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRLVASDGFRLALSE 181 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S S ++ K + EL +++ D+ + ++ + + D ++V+ Sbjct: 182 ERLNAQSES-SFLISLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMRVVEID 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDYR+VLPK + D + +A R +++ VRL +SE+ L +++ +P+ Sbjct: 241 FPDYRKVLPKAFKSKVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSRSPDYG 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 E E + + G ++ I FN ++L+ + + E V + DS S +QI + Y+ Sbjct: 301 EVNEEIPIKKEGEDITIAFNPLFLLEAMRHVHTEEVELNFVDSTSPLQINPLNVEGYLYI 360 Query: 361 VMPMRL 366 +MP+R+ Sbjct: 361 IMPIRI 366 >UniRef50_C8XHU9 DNA polymerase III, beta subunit n=2 Tax=Actinomycetales RepID=C8XHU9_NAKMY Length = 408 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 111/410 (27%), Positives = 178/410 (43%), Gaps = 48/410 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V R+ L + V+ L RP +P+LG +LL+V+ TL++ G D E+ A + + Sbjct: 1 MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60 Query: 61 QPHE-----PG------ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLS 109 E PG V R +I R LP + + + G ++ + +G +RF+L Sbjct: 61 TLDELEPDAPGGPAGTDRVLVSGRLLAEITRSLP-AKPVDLAVLGPKVSIVAGSARFTLP 119 Query: 110 TLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT 169 T+P D+P L + T+ A + T + D L G+ E +G+ L Sbjct: 120 TMPVEDYPPLPQMPA-ASGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEIDGDRLTL 178 Query: 170 VATDGHRLAVCSMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 ATD RLAV + + S V+VP + + + + L GG + V +G + Sbjct: 179 AATDRFRLAVRELGWHPDQENLSTAVLVPARTLADAAKTL-GGAKQVTVALGEGLLGLDA 237 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 GD T +L+D F YR +LP + +E L ++ R A+++ ++ +RL V E Sbjct: 238 GDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVT-DRGHHLRLQVGE 296 Query: 288 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 L +TA ++ AEE L G E+ I FN SY+LD L + + VR+ T Sbjct: 297 GALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHADTVRLSFTTPARPA 356 Query: 348 QI-------------------------------EDAASQSAAYVVMPMRL 366 + D + + Y+VMP RL Sbjct: 357 LLVPIVKSDEPAESAEAAAEAAATPDIDADGVGSDEDTPAYRYLVMPARL 406 >UniRef50_Q11UU6 DNA polymerase III, beta subunit n=13 Tax=Bacteroidetes RepID=Q11UU6_CYTH3 Length = 374 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 176/371 (47%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V LLK L ++G + P +PIL N L ++ DG L + +DL+ M+ +A V Sbjct: 1 MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIA-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEI-AVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ VPA+ D + LPE + E + + S R+ LS A DFP + Sbjct: 60 EAKAKGSIAVPAKILLDTLKNLPEQPVTFTIDPETYSIEISSDNGRYKLSGENATDFPKV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + R I +T F+ ++ +++ + G+ VATDGHRL Sbjct: 120 PGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATFVATDGHRLIR 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S ++++I+P+K + L L + ++++ ++N + +L+D Sbjct: 180 YRRTDIVSEMANTLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMICRLIDE 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE- 298 RFPDY +P + L + + R +I +N+ VRL ++ ++L+I+A + + Sbjct: 240 RFPDYENAIPVDNPNVLTITRTDMMNSLKRISIYANKTTHQVRLKLAGSELQISAEDLDF 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ--- 355 EA E L + G +MEIGFN +++++L+ L + M + + I A Sbjct: 300 SNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDSPQISMHFSAPNRAGIITPADKDEHE 359 Query: 356 SAAYVVMPMRL 366 +VMP+ L Sbjct: 360 DVLMLVMPVML 370 >UniRef50_C4FYD9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYD9_9FIRM Length = 404 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 16/380 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M F++ R++ + L V+ + G+ +P+L + L++ L LTG+D + + + + Sbjct: 22 MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81 Query: 60 -----VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 +Q PG+ + AR F DI R LP + + + SG++ F++ + ++ Sbjct: 82 QEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQDHYNVQLTSGKAVFTIQGVDSS 141 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 +P L + + TLP K+LI T FS ++Q+ R L G+ L VATD Sbjct: 142 QYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDGYLTGVATDS 201 Query: 175 HRLAVCSMPI---GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 HRL+ +PI SL ++ +P+K VIEL R+LD ++ + + + + H + + Sbjct: 202 HRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDD-ESNVTFYVMAQQLVFHFDNLV 260 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQL 290 S+L++G FPD R++P + L QA RAA+L + K V+L +S+ + Sbjct: 261 IYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKMSQGSV 320 Query: 291 KITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + ++ E L G ++ I FN Y+ D + + +++ + + Sbjct: 321 ALLVQGISIGQSTEELSYDSLEGDDLTIAFNPDYMRDAVKSFGDTTIKLGFISGERPLLL 380 Query: 350 E----DAASQSAAYVVMPMR 365 + ++ P+R Sbjct: 381 REDKVEEGHNDLIQLLTPIR 400 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 22/211 (10%) Query: 124 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMP 183 + F++ + + ++ + L GM E + + L +D + Sbjct: 20 PTMHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIE 79 Query: 184 IGQS------LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 Q S+++ + I+++R L ++VQ N ++ G +FT + V Sbjct: 80 TSQEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQDHYN-VQLTSGKAVFTIQGV 138 Query: 238 D-GRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAI-LSNEKFRGV----RLYVSENQL 290 D ++P VLP+ + DK + L K+ + SN++ R + L + L Sbjct: 139 DSSQYP----VLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDGYL 194 Query: 291 KITANNPEQEEAEEI----LDVTYSGAEMEI 317 A + + +I L+ + G + I Sbjct: 195 TGVATDSHRLSKRDIPIKDLNPSLKGLNITI 225 >UniRef50_B9KC54 DNA polymerase III, beta subunit n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC54_THENN Length = 366 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 175/367 (47%), Gaps = 3/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK L + S L + P+L L +V +G + TDLE + A V Sbjct: 1 MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLETGVKASVNCA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + VP + + LP+ + LEG+ +++ SG + F ++T+PA +FP++ Sbjct: 61 EISGDARFVVPGDVLQKLVKVLPD-ETTELSLEGDNLVITSGSTVFRITTMPADEFPDIA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +S + F + + ++ ++E F+ A + LNG+ +E LR VA+DG RLA+ Sbjct: 120 PAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRLVASDGFRLALA 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLVDG 239 I + + ++ K + E+ +L+ P + V+ + D ++VD Sbjct: 180 EEQIENEEET-NFLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTNDVETVMRVVDA 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPDYRRV+P+ + L+++ R +++++ V+ + EN +++ + +P+ Sbjct: 239 EFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENTMRLVSRSPDY 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + L+V G ++ I FN +++D L ++ E + M DS S QI Y Sbjct: 299 GEVIDELEVQKEGEDLIIAFNPKFIVDALRRIETEELEMNFVDSTSPCQINPLDISGYIY 358 Query: 360 VVMPMRL 366 +VMP+RL Sbjct: 359 IVMPIRL 365 >UniRef50_C7M837 DNA polymerase III, beta subunit n=7 Tax=Bacteroidetes RepID=C7M837_CAPOD Length = 374 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 172/371 (46%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V +LLK LQ G + T+PIL N L +++ +L+++ +DLE + + V Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G+ V A+ DI + E + E + + S ++L+ L +FP Sbjct: 60 ESDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNVIEISSTTGNYTLAYLDGEEFPRPV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + T+ + ++ T F+ + D+R ++G+LF+ L V TD H+L Sbjct: 120 ALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTFVGTDAHKLVKY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ + I+P+K + L +L G + + V+ +N + D F +L+DG+ Sbjct: 180 ERLDIKANEAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICRLIDGK 239 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +P+Y V+PK L + R ++ SN+ VRL ++ + L I+A + + Sbjct: 240 YPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAEDVDYS 299 Query: 301 -EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA----SQ 355 + EE Y G ++EIGFN ++ +++N L + + + ++ + I + Sbjct: 300 NKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEILIEMSLPNRAGLITPVDGLDEGE 359 Query: 356 SAAYVVMPMRL 366 + MP+ L Sbjct: 360 KVLMLAMPIML 370 >UniRef50_B2V9G3 DNA polymerase III, beta subunit n=2 Tax=Sulfurihydrogenibium RepID=B2V9G3_SULSY Length = 362 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 190/367 (51%), Gaps = 6/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L + ++V + LPIL N LL+ DG L++ GTDLE+ + Sbjct: 1 MKLKAYKKDLQEAFKKVIS--EKKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIP-A 57 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G+ V ++K DI + L + E + +GE + + SG++++SL T A DFP + Sbjct: 58 DVEEEGSLCVNSKKISDISKVLAQN-EALLYTDGETLKITSGKTKYSLPTFEADDFPLPE 116 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + S++ ++ + + I T ++++ + R+ LNG+ F +L VATDGHRLA+ Sbjct: 117 AFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKGKLDFVATDGHRLALY 176 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S I IVP+K + E+ +++ ++ + V + ++I +++ +++L++G Sbjct: 177 STEITGKGLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYVLSARLLEGV 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY +V+P + + + L + R I + + ++L + +N+L I+ Sbjct: 236 FPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTPPTSDT 295 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA-SQSAAY 359 AE+ ++V Y G E EIGFN Y+L+ ++ ++ +N+ + S I + Sbjct: 296 YAEDEIEVNYDGEEFEIGFNGKYILEAVDEIEDKNIVAKFINKDSQTVIIPENPEERYLA 355 Query: 360 VVMPMRL 366 VVMPM + Sbjct: 356 VVMPMTI 362 >UniRef50_A9FMJ3 DNA polymerase III beta subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FMJ3_SORC5 Length = 376 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 181/377 (48%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + ++ LL+ + + G + +P L N+LL + + TDL + + + Sbjct: 1 MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTGQ-THA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRS--RFSLSTLPAADFPN 118 G VPAR + + +P+G EG +++ S R++L LP ++FP Sbjct: 60 DIKTGGTVAVPARDLLERVKAMPDGPIQITTTEGAHTSLKAVGSPRRYTLPGLPGSEFPQ 119 Query: 119 LDDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + LP + LI T FS++ + R ++N LFE G+ +R V TDGHRL Sbjct: 120 LPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGDRVRMVTTDGHRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-----LRVQIGSNNIRAHVGDFIF 232 + + S + ++++P K + EL R+ + + + N ++ F Sbjct: 180 SKMEATVSGSSATATMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIAGMQF 239 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 + KLVD +FP Y++V+P ++ + A +A A+ +N++ GV+L ++ L+I Sbjct: 240 SVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPGTLRI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 T+ +P+ + + V YSG E+ IGFN Y LDVL ++ E V + ++ + I Sbjct: 300 TSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASIDDEEVILGISGELDPAVIRPG 359 Query: 353 ---ASQSAAYVVMPMRL 366 QS V+MPMR+ Sbjct: 360 SESNQQSYVAVIMPMRI 376 >UniRef50_Q0AK26 DNA polymerase III, beta subunit n=20 Tax=Nitrosomonadaceae RepID=Q0AK26_NITEC Length = 373 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 214/372 (57%), Gaps = 7/372 (1%) Query: 1 MKFTVE-REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK T+ R+ L KPLQ VSG + R TLPIL N+L+ + DG L+L TDLE+E+ A + Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 60 VQPHEPGAT--TVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + G+ TV RK DI R LP G+ + + R+ + SG+SRFSL LPA DFP Sbjct: 61 PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRLQIVSGKSRFSLQLLPAEDFP 120 Query: 118 NL--DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 + D+ + + FTL Q +K+ ++ +MA QD+RYYLNG L E +L VATD H Sbjct: 121 RMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLIEDNKLMLVATDTH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA+ S + I+PRK V+EL+R L+ D P+ V+I S I H D + SK Sbjct: 181 RLAITSFDLDGQFEKSETIIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSDAVLVSK 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL--SNEKFRGVRLYVSENQLKIT 293 ++ G+F D+RR +P+ + A R AI+ SN+ FR V L ++ +L I+ Sbjct: 241 VISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITNGKLNIS 300 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 A N EQEEA+E +++ YS ++ FN+ Y+++VLN L E++R + S++ I Sbjct: 301 AKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDSEHIRCSFENMQSAILITLPD 360 Query: 354 SQSAAYVVMPMR 365 +V+MPMR Sbjct: 361 DDQFNHVLMPMR 372 >UniRef50_D1BQ78 DNA polymerase III, beta subunit n=3 Tax=Veillonella RepID=D1BQ78_VEIPT Length = 370 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 164/369 (44%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T + +L K + + + + + G + + +G + L G D E+ + + Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG V +R F ++ R LP + E+ +G + + SG S F+L TL DF + Sbjct: 60 DIKEPGTLVVGSRYFQELIRKLPGDTIELYKPEDGNSLTITSGSSEFNLVTLHPDDFSLV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + + MK LI+ T ++ A + R G L E E+ VATD HR+AV Sbjct: 120 EQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTMVATDTHRMAV 179 Query: 180 CSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKLV 237 + I + + I+P K + E+ R+L + + + I + S+L+ Sbjct: 180 KKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIISRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANN 296 +G +P+Y +V+P D A R ++L+ + + +R SE+ + ++ N Sbjct: 240 EGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLSTQN 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E A+E + V + G I FN Y+ D+L +N+ + L V I + + Sbjct: 300 TEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIHLFLK-QNGPVVIRQDNNPN 358 Query: 357 AAYVVMPMR 365 YVV P+R Sbjct: 359 YTYVVTPVR 367 >UniRef50_UPI0001C36FC0 DNA polymerase III subunit beta n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FC0 Length = 367 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 174/369 (47%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L + + VS + + T+P L + ++V+ GT+ LTG +LEM + ++ Sbjct: 1 MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTIS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADFPNL 119 G V AR F + R + G E+ ++ ++ + + S + A++FP L Sbjct: 60 STEGEGEFVVSARLFSEFTRRM-SGDEVTFDIDESMVINISCSATECSFPAMSASEFPEL 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 F++ Q+T+K +I T ++ + + + L G LF+ E VA DG RLA+ Sbjct: 119 PMVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDIENGSFNMVAIDGFRLAI 178 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + +VP+K ++E+ ++ D D P + +I +G S+L++ Sbjct: 179 R-GEMTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVISRLLE 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR-GVRLYVSENQLKITANNP 297 G F +Y+ +P + + + R ++L ++K + +R V +KI+ Sbjct: 238 GAFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKISCRTG 297 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + + + SG + IGFN +L+ L A + + VR+ ++ ++I +S Sbjct: 298 -IGKINDAISADISGETVTIGFNNKLILEALRAAEGDKVRIRFNGAMKVIEILPLEGESF 356 Query: 358 AYVVMPMRL 366 ++VMP++L Sbjct: 357 IFLVMPIQL 365 >UniRef50_B1I1H5 DNA polymerase III, beta subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1H5_DESAP Length = 389 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 169/389 (43%), Gaps = 26/389 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG-----TLSLTGTDLEMEMVA 55 M+F RE LL + V + + + L +L + G +SLTG+++++ + Sbjct: 1 MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAGEAGQQGVSLTGSNMDLTIR- 59 Query: 56 RVALVQPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAA 114 R+ GA +PAR+ +I R LP+ I + + + GR+R L+ AA Sbjct: 60 RIIPAGVTVSGAVVLPARQLAEIVRRLPDVPVSITADHQKNSVELTYGRARALLNGYSAA 119 Query: 115 DFPNLDDW-------------QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE 161 +FP D ++ T P L ++ D+R G+L E Sbjct: 120 EFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFTGVLLE 179 Query: 162 TEGEELRTVATDGHRLAVCSMPIGQSLPSH--SVIVPRKGVIELMRMLD-GGDNPLRVQI 218 + E+R VATD HRLA+ + + VIV + + EL+R+L + V I Sbjct: 180 IDEGEIRAVATDTHRLAMHRVDYEGEPENRKMQVIVSGRALGELVRVLSQAEEEQFEVTI 239 Query: 219 GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLE-AGCDLLKQAFARAAILSNEK 277 N I VG S+L+ G +PDYR+V+PK + LL Q RAA L+ + Sbjct: 240 AENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVERAATLAQDG 299 Query: 278 FRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVR 337 + L++ + L +TA + E E + V +G E+EI FN Y+ + L + + Sbjct: 300 SPVINLHLGQGLLGVTAQS-EAGSIHEEIPVELAGQELEISFNAKYLEEALRWCESTQLI 358 Query: 338 MMLTDSVSSVQIEDAAS-QSAAYVVMPMR 365 + V I + +V+P+R Sbjct: 359 LDFHGPVGPAIIRPLGDGDTYLALVLPVR 387 >UniRef50_C0WAM5 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAM5_9FIRM Length = 372 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 170/371 (45%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ E L K + V + P PI + + + TL L D+ M +V V Sbjct: 1 MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSMK-KVLEV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-MLVRSGRSRFSLSTLPAADFPNL 119 +E G VPA+ D+ Q EG + + + S + + + + D+P+ Sbjct: 60 NGNEDGVILVPAQSLGDLLAKFSTDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPSF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 +++ E TLP+ + +LI T ++ + + R G+ E +G+ + V T+ HRLA+ Sbjct: 120 PEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVFMEKKGQHITCVGTNTHRLAI 179 Query: 180 CSM-PIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S P +S+++P + + E+ L G + + + I +G S L+ Sbjct: 180 KSADPETADDSEYSLLIPARVLKEIANNLTGELPEDVAIIQKDSKILVRMGSLSLVSSLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G FPDY R +P + L++A R ++ + ++ +RL + +++ +++ Sbjct: 240 EGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSSAAS 299 Query: 298 EQEEAEEILDVTYSGA--EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 ++ + EI++ +G + I FN Y++D + C+ V + S+S ++ Sbjct: 300 DRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISCDQVVLETNSSLSPARMMPVDDP 359 Query: 356 SAAYVVMPMRL 366 S Y++ P+R+ Sbjct: 360 SYTYIITPVRV 370 >UniRef50_C6X4N3 DNA polymerase III beta subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4N3_FLAB3 Length = 385 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 175/374 (46%), Gaps = 11/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V L K L VSG + + PIL N L ++ + L +T +D E +V + V Sbjct: 10 MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLE-V 68 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-----GERMLVRSGRSRFSLSTLPAAD 115 + + G VPA+ F D + E + G + + + F+++ A D Sbjct: 69 RSDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAED 128 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L ++ + + + + T F+ ++ +R + G+LF+ + +E V+TD H Sbjct: 129 YPELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNFVSTDSH 188 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL V + I+P+K + +L + + ++ N + G+ I+ + Sbjct: 189 RLVVYKRTDLMNAEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIWICR 248 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG++P+Y V+PK L +LL + RA+I+SN+ VR +S N L + A Sbjct: 249 LIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHLHAE 308 Query: 296 NPEQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA- 353 + E +A+ + Y+G ++ IGF+ ++ ++L+ L +++ M ++ IE Sbjct: 309 DTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSSDDITMKMSQPNRPGIIEPVDG 368 Query: 354 ---SQSAAYVVMPM 364 ++ + MP+ Sbjct: 369 LETDENILMLSMPV 382 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 85/264 (32%), Gaps = 38/264 (14%) Query: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184 +++F + +++ + ++ R L LFE + L+ A+DG V S+ + Sbjct: 9 QMKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLEV 68 Query: 185 GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN----IRAHVGDFIFTSKLVDGR 240 VP K + ++ L V+ + + F L Sbjct: 69 RSDDTGKFA-VPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAE 127 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF-----RGVRLYVSENQLKITAN 295 DY + + + ++ +L +A ++ GV E++ + Sbjct: 128 --DYPELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNFVST 185 Query: 296 NP---------EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 + + A E ++ + I ++L ++V + ++++ Sbjct: 186 DSHRLVVYKRTDLMNA-EPIEFIMPKKPLAI------FKNILAN-SSDDVTIEFNENMAK 237 Query: 347 ---------VQIEDAASQSAAYVV 361 ++ D + + V+ Sbjct: 238 FTFGNNIWICRLIDGKYPNYSAVI 261 >UniRef50_Q1GC42 DNA polymerase III, beta chain n=4 Tax=Lactobacillus delbrueckii RepID=Q1GC42_LACDA Length = 375 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 185/374 (49%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV+R + L V + R +PIL + L++ + L +TG++ ++ + + Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60 Query: 61 Q---PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 G+ V A F +I R LP EG ++ + S ++ + ++ L A+ +P Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKEGNQIQITSDKADYVINGLDASAYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + F+LP T++ LI T F+++ ++ R L G+ F + +++ VATD HRL Sbjct: 121 RLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIKAVATDSHRL 179 Query: 178 AVCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + I S+I+P K + EL +++ D ++V +G + IR + F ++L Sbjct: 180 SQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRL 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVS--ENQLKIT 293 ++G +PD R+LP ++ Q +RA++L++ + V++ ++ + + ++ Sbjct: 240 LEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVADQTVLVS 299 Query: 294 ANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 N+PE + EE + + +G ++ I FN Y+ L A ++V + T+S+ + Sbjct: 300 GNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVIINFTESLRPFTVVPN 359 Query: 353 ASQ-SAAYVVMPMR 365 ++ P+R Sbjct: 360 DQSVEFVQLITPIR 373 >UniRef50_Q0RUQ2 DNA polymerase III, beta chain n=25 Tax=root RepID=Q0RUQ2_FRAAA Length = 413 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 102/394 (25%), Positives = 170/394 (43%), Gaps = 32/394 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPT--LPILGNLLLQVADGTLSLTGTDLEMEMVARVA 58 MKF VER+ + + + L RPT L +L LLL L + D E+ V Sbjct: 22 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G V + +I R LP A + + ++G R+++ G +RF+L LP D+P Sbjct: 82 -ATVSEEGRALVNGKLLAEITRALP-AAPVDLGIDGTRLVITCGNARFALPMLPVDDYPA 139 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L V + + + + D L G+ E EG+ L ATD +RLA Sbjct: 140 LPAMPP-VTGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAATDRYRLA 198 Query: 179 VCSMPIGQSLPSHS---------VIVPRKGVIELMRMLDGGDNPLRVQIG-----SNNIR 224 V S+ + +VP + +++ + L G + + +G Sbjct: 199 VRSLKWRPDDSAGEGDAAAPVTVALVPARTLLDTAKSLSGSGVEVSIALGTGPSGETLAG 258 Query: 225 AHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 T++L++G+FP +R++LP + + L++A R A+++ K V+L Sbjct: 259 FAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVA-AKTAPVQLS 317 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD-- 342 S + L + A + +A E L VTY G E+ + FN SY+LD L AL+ + VR+ Sbjct: 318 FSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVRIGFASAE 377 Query: 343 -----SVSSVQIEDAASQ-----SAAYVVMPMRL 366 + + A Y++MP+RL Sbjct: 378 DPAVAANKPAILTGKADDDGEVPDYRYLLMPIRL 411 >UniRef50_Q0B0Z3 DNA polymerase III, beta subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0Z3_SYNWW Length = 409 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 195/377 (51%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-LSLTGTDLEMEMVARVAL 59 MKF +E++ LL V + +P+L LLL+ T L++T TD+E+ + A A Sbjct: 30 MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRASTAK 89 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ E G+ V A FFD + LPE I + E ++ ++ GRS ++T ++P Sbjct: 90 IEVIEKGSVLVNAHYFFDFIKLLPEVPIFIELNQETAQLDIKYGRSSGFINTYRDYEYPA 149 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRL 177 L + + FT+ Q +K ++ T F+ A R G+LF+ EG L VA+D HRL Sbjct: 150 LPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDLGEGGNLNVVASDTHRL 209 Query: 178 AVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A S I P S I+P + E++R+LD + + + +NN+ + +F+ S+L Sbjct: 210 ARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFLLLSRL 269 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE---KFRGVRLYVSENQLKIT 293 ++G++P+Y +V+P++ ++ +L RA ++ ++ K + R EN++++ Sbjct: 270 IEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEENEVEVN 329 Query: 294 ANNPEQEEAEEILDVT--YSGA-EMEIGFNVSYVLDVLNALKCE--NVRMMLTDSVSSVQ 348 + + E E++++ G E+ I FN +Y LDV+ L+ E + + L+ + V Sbjct: 330 SYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGEAKELLINLSSILGPVM 389 Query: 349 IEDAASQSAAYVVMPMR 365 I + + YV++P+R Sbjct: 390 IVNPQKDNYLYVLVPLR 406 >UniRef50_C7QFL8 DNA polymerase III, beta subunit n=3 Tax=Actinomycetales RepID=C7QFL8_CATAD Length = 396 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 170/394 (43%), Gaps = 32/394 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-------ADGTLSLTGTDLEMEM 53 MKF VER+ L + + + L RP P+L L+ + G+++L+G D E+ Sbjct: 1 MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60 Query: 54 VARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 A++ EPG + + DI + LP + EG ++L+ G SRF+L TLP Sbjct: 61 RAQI-GADVTEPGRILIHGKLLADIAKSLPNRP-VEFSTEGSKVLLSCGSSRFTLQTLPV 118 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 D+P L + + + + + + D L G+ E EGE++ VATD Sbjct: 119 EDYPALPTMPT-ATGAVTASGLAGAVSQVAIAAGRDDTIPMLTGIRVEIEGEKITLVATD 177 Query: 174 GHRLAVCSMPIGQSLPSHSV--IVPRKGVIELMRMLDGGD-------------NPLRVQI 218 RLAV + S ++P K + + + L GGD + + Sbjct: 178 RFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGDWVSLALSGGDAGEGLIGFES 237 Query: 219 GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF 278 G G TS+L+ G F YR + P + +A R ++++ ++ Sbjct: 238 GEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVSLVA-DRT 296 Query: 279 RGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 ++L ++ ++ + A ++ +A E +D G ++ + FN S++LD L + + ++ Sbjct: 297 SPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVIDTQYAQL 356 Query: 339 MLTDSVSSVQIED------AASQSAAYVVMPMRL 366 T + + A + Y++MP+R+ Sbjct: 357 SFTVASKPAVLMGRPALDAPAQEEFRYLMMPLRV 390 >UniRef50_A0LLR4 DNA polymerase III, beta subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLR4_SYNFM Length = 369 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 110/369 (29%), Positives = 189/369 (51%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG-TLSLTGTDLEMEMVARVAL 59 MK +E+ +L++ LQ+V + ++P+L N+L+ ++ T+ + TDLE+ + + Sbjct: 1 MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQ-TG 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 Q PG++TV ARK F+I R LP+ + L +M + SGR+RF LST+P DFP L Sbjct: 60 GQVETPGSSTVSARKLFEIVRELPQPEVLLEGLPNNKMQILSGRARFELSTIPGEDFPQL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEELRTVATDGHRLA 178 + ++ + A +KR + T S+ + + + G + R V++DGHRL+ Sbjct: 120 NFYRETELVKVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNEDSYRFVSSDGHRLS 179 Query: 179 VCSMP---IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 C +P G +I+PRKGV E++RML+ + + + + + + + Sbjct: 180 YCEVPKEAFGTLDIREGLIIPRKGVQEILRMLE-KEEEVVLGVHEKYVVLRTPSTFLSVQ 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D FP+Y+ ++P+ + + A R++ILSN +R VR +++ L++ A Sbjct: 239 LLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKGVLELEAG 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 NPE A E LDV Y G + + FN+ Y+L+ + AL VR D + Sbjct: 299 NPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWVDQFHGGVFVGSEDP 358 Query: 356 SAAYVVMPM 364 +VMPM Sbjct: 359 GFLSLVMPM 367 >UniRef50_A9KPP2 DNA polymerase III, beta subunit n=36 Tax=Bacteria RepID=A9KPP2_CLOPH Length = 370 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 175/366 (47%), Gaps = 5/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ LL + + + T+PIL ++++V + T+ L D+E+ + + Sbjct: 1 MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIET-IVKG 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ + A+ F +I R LP+ E + +++F+++ A +FP L Sbjct: 60 SIISNGSVAINAKVFSEIIRKLPDNEVNVETDEKFMTTITCEKAKFTIAGKSAEEFPMLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + L Q T+K +I T FS++ + + G LFE G ELR V+ DGHR+++ Sbjct: 120 TIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRVVSLDGHRISIR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + S ++VP K + E+ ++L G + + + ++ D + S+L++G Sbjct: 180 KVELKNSYAPKKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFDDTLVLSRLIEG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPE 298 + ++L + + ++ RA +L E + + + + + + +L++ N Sbjct: 240 EYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIEDKKLELKINTS- 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +E +D+ G ++ IGFN +++D L + E V + L + + I+D +S Sbjct: 299 IGTMDEDIDIEKEGKDILIGFNPKFLIDALRVIDDEEVEIYLINPKAPCFIKDKE-ESYI 357 Query: 359 YVVMPM 364 Y+++P+ Sbjct: 358 YLILPV 363 >UniRef50_D2QRF3 DNA polymerase III, beta subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRF3_9SPHI Length = 379 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 13/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA------DGTLSLTGTDLEMEMV 54 MKF V LLK LQ ++G + P +PIL N L ++ GTL++T +DL+ M Sbjct: 1 MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPA 113 ++ V+ +E G+ +PA+ D R LPE + + E + + R+ LS Sbjct: 61 TQIP-VEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTEILTDNGRYKLSGENP 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 DFP L + + + I T F+ + D+R + G+L + + VATD Sbjct: 120 IDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATFVATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 GHRL + S S+I+PRK + L++ + P+ + N G Sbjct: 180 GHRLIRYRRTDLNASASTSIIIPRKALQ-LLKASLPENVPVTAEFSQANASFTFGPTQLI 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 +L+D RFPDY +P N + G L + R I +N +RL + N L I+ Sbjct: 239 CRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKANSLTIS 298 Query: 294 ANNPEQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED- 351 A + + EA E L Y G MEIGFN + +VL+ L + + + ++ + + Sbjct: 299 AEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSAKMISLEMSAPNRAGLLIPA 358 Query: 352 --AASQSAAYVVMPMRL 366 ++ +VMP+ L Sbjct: 359 DKEENEDILMLVMPVML 375 >UniRef50_P57127 DNA polymerase III subunit beta n=34 Tax=Buchnera aphidicola RepID=DPO3B_BUCAI Length = 366 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 155/362 (42%), Positives = 233/362 (64%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L+K LQ++S L +LPIL N+L+ + +G LSLTGT+LE+E+VA + L Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 H G T+ RK DICR + I +QL +M + SG SR+ L+TLP FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNNNKMHIISGNSRYILTTLPYDSFPVHH 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D+ EF +P +K++IE QFSMA QDVRYYLNG+L E L VATDG+RL + Sbjct: 121 DFHHISEFFIPSDILKKMIEKIQFSMAKQDVRYYLNGILLEKTDRSLYAVATDGYRLGIS 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +++ S+++PRKGVIEL R+L+ P++V +G NNIR H+ D IFT++L++G+ Sbjct: 181 KFFLKENIIPFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQ 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +PDY+ VL +N + + LLKQ+ RAAILS+EKF GV +++ Q K+ ++N E+E Sbjct: 241 YPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 AE+ ++ Y+G ++I NV Y++++LN++ EN+ + L ++ +S+QIE S YV Sbjct: 301 IAEDRFNINYTGNTVKISINVYYIIEILNSITSENIFLFLNNANNSIQIEAENDASILYV 360 Query: 361 VM 362 VM Sbjct: 361 VM 362 >UniRef50_C3LH37 DNA polymerase III, beta subunit n=48 Tax=Bacillus cereus group RepID=C3LH37_BACAC Length = 376 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 177/376 (47%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V +H + L VS + + +PIL + + ++L ++ + + + Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 QPHE-------PGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 E G VPA+ F +I + +P I + + ++SG +L+ PA Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIK-SKNEQTITIQSGEITLNLNGFPA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +FPN+ E + + + T F++A + R+ L G+ E + +L ATD Sbjct: 120 NEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIELDHNKLICAATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ I ++ + + IVP + EL+++++ + + + ++I G Sbjct: 180 SHRLAIRETLISTNMKA-NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLY 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYV-SENQLK 291 S+L++G++P+ ++P + + Q R+++L++E V L + +E+ ++ Sbjct: 239 SRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQ 298 Query: 292 ITANNPEQEEAEE--ILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 I++N + + E +DV ++ I F+ ++LD L A+K E V + + S+ + I Sbjct: 299 ISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETVTLSFSGSMRPILI 358 Query: 350 EDAASQSAAYVVMPMR 365 E +A +++ P+R Sbjct: 359 EAGTQSAAIHLISPVR 374 >UniRef50_B3DWG7 DNA polymerase sliding clamp subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWG7_METI4 Length = 371 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 171/373 (45%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF+VE++ + L + + R TLPIL ++LL L TDL+ + + Sbjct: 1 MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELT- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G TT+PAR+ I R L + + S RS F L+ LP D+P Sbjct: 60 ANVEEEGTTTLPARRLLTIVRELDSDQLSWKTNSNHQTTLSSDRSFFQLNGLPDDDYPKF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + E ++ Q +++++ +++MA + R LNG F + TDG RLA Sbjct: 120 FPERREEGLSISQGKIRKMLRMVEYAMA-DESRPALNGAWFSIKSGRFEVAVTDGKRLAY 178 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + IVP K V+E+ R+++ D L++ + SN I + + +F SKL +G Sbjct: 179 TFEEVENESFEAEGIVPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNILFFSKLTEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR--GVRLYV-SENQLKITANN 296 ++P++++V+PK + + A R + ++ V L N+L ++ Sbjct: 239 KYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGTNELVLSCQA 298 Query: 297 PEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV---SSVQIEDA 352 PE +A E + + + G I FN Y+++ L ++ E+V + + + I Sbjct: 299 PEIGQARETISLKAFQGEAFSIPFNPLYLIEPLREMEKEDVILEFVNPSTKGNPCLIT-- 356 Query: 353 ASQSAAYVVMPMR 365 + YV+MP++ Sbjct: 357 EGTNFVYVLMPIK 369 >UniRef50_C8P210 DNA polymerase III, beta subunit n=2 Tax=Erysipelotrichaceae RepID=C8P210_ERYRH Length = 372 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 172/371 (46%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 MKF ++++ K L V LPIL + ++ D L+L +D + + + Sbjct: 1 MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60 Query: 58 --ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + +E G + +R + R L ++G + ++ ++++ A Sbjct: 61 DENKLNVYEEGEVVLESRYILEAVRKLDSDFIDFEIIDGALTRISGNKAEYNINGSKAEL 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + EF +P + +I+ T F + + R G+ F+ +G + VATD + Sbjct: 121 YPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNFKADGNTMNCVATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA S+ + + ++ +P + E+ + + + + + + ++ +V + S+ Sbjct: 181 RLAKKSIDLPTPM-DFNICIPAVNLYEVSKTISDNKD-VHIAVSDKLVQFYVDSTLIQSR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG FPD R++P L + A R++ L ++ + V+L S + I++ Sbjct: 239 LIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEGVLISSK 298 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E +EEIL + Y G ++I F+ Y+++ L + K + V+++ + + +++ Sbjct: 299 SQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKTDTVKILFVGEMQAFILKNPED 358 Query: 355 QSAAYVVMPMR 365 S +V+P+R Sbjct: 359 DSIVQLVLPVR 369 >UniRef50_C6I687 DNA polymerase subunit III beta n=20 Tax=Bacteria RepID=C6I687_9BACE Length = 374 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 167/359 (46%), Gaps = 3/359 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V L LQ VS + + LPIL L Q+ DGTLS+T +D E MV V + Sbjct: 1 MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G V A+ D + +PE ++ + + V+ ++SL A +FP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPEQPLTFDIKPDTYEITVQYQNGKYSLMGQNADEFPQS 120 Query: 120 DDW-QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + V + + I + F+ A ++R +NG+ F+ E++ VA+DGH+L Sbjct: 121 ATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITMVASDGHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + + I+P+K L +L + ++ N + + +L++ Sbjct: 181 RCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMVCRLIE 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GR+P+Y V+P+N + L A R +I S++ ++L + ENQ+ ++A + + Sbjct: 241 GRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVSAQDID 300 Query: 299 QE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 AEE Y+GA M IGF ++++D+LN + + V + L D + I + Sbjct: 301 FSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVVIELADPSRAGVIIPVEQEE 359 >UniRef50_C8W8K5 DNA polymerase III, beta subunit n=5 Tax=Coriobacteriaceae RepID=C8W8K5_ATOPD Length = 366 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 172/370 (46%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV + L L VS +G TLPIL + L+ +G L L +DL + + ++A Sbjct: 1 MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G T V + +I + LP+ A I + + V RS F L+TL A D+ Sbjct: 60 NVEEEGETVVSGKVIQNIVKNLPDAA-ITFEGGERTLSVICQRSSFRLNTLSAHDWAQFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E LP + +++ + + R L G+ E +R VATD RLAVC Sbjct: 119 EFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRLVATDSFRLAVC 178 Query: 181 SMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S S+I+ + +++ M + + + N + G+ S+ ++G Sbjct: 179 DSNTDTPAGESFSIIISGEVFHDVLSMRSMTEK-VLIGTTDNQVIFQFGNTTHISRKIEG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN--QLKITANNP 297 FPDY+++LP + ++ + A R ++++ VR V + ++K++A++P Sbjct: 238 HFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIALA-NPSVRFDVDADGKEVKLSASSP 296 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCEN-VRMMLTDSVSSVQIEDAASQS 356 +Q E+ E ++ G + I N YV D +NA ++ +R+ L + + Sbjct: 297 DQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSKDLLRLELQGPSQPAIFKSNGKVN 356 Query: 357 AAYVVMPMRL 366 Y++MP+RL Sbjct: 357 YLYLLMPVRL 366 >UniRef50_C4WNF5 DNA polymerase III, beta subunit n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WNF5_9RHIZ Length = 351 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 182/368 (49%), Gaps = 21/368 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +++R L L V+ + R ++PIL N+LL V DG L LTGTDL++E+ + ++ Sbjct: 2 MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQ--LEGERMLVRSGRSRFSLSTLPAADFPN 118 H G+ TVP + DI + + + + G R+ V SGRSR+ L LPA DFP+ Sbjct: 62 DCH-SGSATVPGKMLADIAKRVTGDITLELDAASSGGRLTVASGRSRYKLDVLPAEDFPS 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + L + L+ +++ R +L+G+ F + L VATDGHRL Sbjct: 121 FSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEGRLVAVATDGHRLV 177 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + VI+P K V L + +++ + +R G + TSKL++ Sbjct: 178 RNYG--DEGDTEYGVILPSKLVAMLPK------GVIKLSLSQTKVRIEAGGTVITSKLIE 229 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FPD+ R++P L L A R + ++ + R V+L V+ + L ++ + Sbjct: 230 GTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEVA-DVLCLSIAD-- 286 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +A++ ++ G + IGFN Y+ D+L A+ ++V +D +S + + Sbjct: 287 --KAQDEIEGELDGEPLTIGFNPKYLQDMLGAVDEKDVCFAFSDGMSPAVLTGQG--NWT 342 Query: 359 YVVMPMRL 366 VVMP+R+ Sbjct: 343 GVVMPLRV 350 >UniRef50_C3PE73 DNA polymerase III, beta subunit n=12 Tax=Corynebacterium RepID=C3PE73_CORA7 Length = 444 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 96/390 (24%), Positives = 159/390 (40%), Gaps = 31/390 (7%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V ++ L + V+ L + T P+L +L+ D L TG D E+ R+A + Sbjct: 58 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGM-V 116 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 EPG V + DI LP EI + E ++L+ G SRF L +P D+P L Sbjct: 117 DEPGRIAVAGKLLSDIVASLP-NKEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQLPVL 175 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 EV T+ I + D L G+ + G + ATD RLA+ + Sbjct: 176 P-EVTGTINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMTATDRFRLAMRTF 234 Query: 183 PIG--QSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIG-------SNNIRAHVGDFIF 232 S ++VP K + E R LD + P+ + +G H + Sbjct: 235 EWEPVSSDVQAKLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHADNRET 294 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 T++++D FP+ +LPK L++A R ++L+ ++ +R+ SE ++ + Sbjct: 295 TTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEGEVTL 353 Query: 293 TANNPEQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 A + A E L ++G + I FN SY+ D L + V T+ + Sbjct: 354 AA-GADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTNRVVFGFTEPSRPAIMIP 412 Query: 352 AASQ---------------SAAYVVMPMRL 366 + Y++MP+RL Sbjct: 413 EPEELPAANEDGSFPTPETDFTYLLMPVRL 442 >UniRef50_A7HMB7 DNA polymerase III, beta subunit n=3 Tax=Thermotogaceae RepID=A7HMB7_FERNB Length = 367 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 185/366 (50%), Gaps = 4/366 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KFTV + + K + S +G R PIL LL + +G +++ TDL+ ++++V + + Sbjct: 3 KFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVGE 62 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTL-PAADFPNLD 120 A V A DI R LPE I + ++LVRSG+++++++T+ FP +D Sbjct: 63 YEGNDAFAVDAELVDDIVRNLPEDEFI-FEYSNGKLLVRSGKAKYNITTVSDIERFPIVD 121 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +S ++F++ + ++ +++ F + + LNG+ +E G LR VA+DG+RL + Sbjct: 122 TDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRLVASDGYRLGLA 181 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSKLVDG 239 + I+ K + EL ++L P+ + + + + GD + V+ Sbjct: 182 EQKLNLENE-FDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTTIVRTVEE 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPDY+RVLPK + D +A R ++S V+L ++++ +++T+ + + Sbjct: 241 TFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMELTSQSSDF 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA E + +T G ++ + FN ++ + L + + + D++S +QI Y Sbjct: 301 GEAVESIPITKDGEDLIVNFNPKFLNEPLKHIDEKEIEFNFVDNLSPLQINPRNVGGYIY 360 Query: 360 VVMPMR 365 +V+P+R Sbjct: 361 IVLPVR 366 >UniRef50_D2RMT4 DNA polymerase III, beta subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMT4_ACIFE Length = 375 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 167/374 (44%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ E + L + + V + PI + + TL L D M+ + V Sbjct: 1 MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNTLQLIAMD-NTYMMNKKLDV 59 Query: 61 QPHEPGATTVPARKFFDICRGL-PEGAEIAVQLEGER-MLVRSGRSR--FSLSTLPAADF 116 E G +PA+ D+ P+ QL GE+ M +++ ++R + + + ++ Sbjct: 60 NGEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMDPEEY 119 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + Q + LP+ M +LI T ++ + R G+ E G+ L V T+ HR Sbjct: 120 PAMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQHLTAVGTNTHR 179 Query: 177 LAVCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTS 234 LA+ + + + S+++P + + E+ L+G P+ + + I A VG S Sbjct: 180 LAIKEVELPEGDDSEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGSLTIIS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L++G+FPDY+R +P + +++A R ++ S + VRL + + + +++ Sbjct: 240 SLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADGITLSS 299 Query: 295 NNPEQEEAEEILDVTYSGA--EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + +EI+ G + I FN Y+ D + V + S+S ++ Sbjct: 300 AVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGTDRVSLETNQSLSPARLMPE 359 Query: 353 ASQSAAYVVMPMRL 366 +S Y++ P+R+ Sbjct: 360 GDESYTYILTPVRV 373 >UniRef50_A9B4J2 DNA polymerase III, beta subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4J2_HERA2 Length = 381 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 171/381 (44%), Gaps = 16/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +E+L + L + GR +LP+L N+LL G L L G +LE+ + A + Sbjct: 1 MRLACLQENLKRGLALAGHAVAGRSSLPVLANILLATESGRLKLAGNNLEIGITA-LVGA 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E GA T+PA+ D+ LP + E+ V + + V ++ ++ + A +FP + Sbjct: 60 KVDEDGAITIPAKLLSDLVGNLPNDTVELEVDPRTQTLTVTCRGTKANIKGIDADEFPAM 119 Query: 120 DDWQSEVEFT-LPQATMKRLIEATQFSMAHQDVRY--YLNGMLFETEGEELRTVATDGHR 176 +E LP +++++ + + A ++ L G+L G + A DG+R Sbjct: 120 AVPGNEPVLAYLPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATFAAIDGYR 179 Query: 177 LAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFT 233 LAV ++ + + +++P + + EL R L + P+ + I SN + H F Sbjct: 180 LAVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTVDFV 239 Query: 234 SKLVDGRFPDYRRVLP--KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS----- 286 S+++DG+FPDY R +P N +A R A+ S V L + Sbjct: 240 SRVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERGDGS 299 Query: 287 -ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 +L + AN E E+ E + G + ++ NV Y+ + L A+ + V + S Sbjct: 300 EPGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDTDQVALETQTPNS 359 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 ++VMPMR+ Sbjct: 360 PGVFRPIGGDEYLHLVMPMRI 380 >UniRef50_A6C2Q1 DNA polymerase III, beta chain n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C2Q1_9PLAN Length = 376 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 183/374 (48%), Gaps = 12/374 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + R LL Q + + R +L L+ ADG +L+GTDLE+ + V Sbjct: 1 MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60 Query: 61 QPHEPGATTVPARKFFDICRGL-PEGAEIAVQLEGER----MLVRSGRSRFSLSTLPAAD 115 + PG + + I R + EI ++ + E +L+++G+S F LS ++ Sbjct: 61 EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 FP ++ + F +P + + +I T F+ + RY L G+LF+ EG++L ATDG Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDVEGDKLTLAATDGR 180 Query: 176 RLAV----CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 RLA+ CS ++ ++ ++P K + + + L G + +++ I +N++ G Sbjct: 181 RLAMVESACSYQGSEAYENNRPVIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKSGRST 240 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 +LV+GRFP YR V+P P ++ A +A I+++ + RGV S L Sbjct: 241 IFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSSGLLT 300 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSVSSVQIE 350 + + E++ + + + G ++ I F+V Y+ D L L ++R+ L DS S+ ++ Sbjct: 301 LKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAAHIRLQLIDSDSAAVLK 360 Query: 351 DAASQSAAYVVMPM 364 YV+MP+ Sbjct: 361 --TDDGYTYVIMPL 372 >UniRef50_B7H828 DNA polymerase III, beta subunit n=20 Tax=Bacteria RepID=B7H828_BACC4 Length = 376 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 78/376 (20%), Positives = 176/376 (46%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F V + + L +V+ + + +PIL + + ++L ++ + + + + Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 60 ------VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + G VPA+ F +I + +P I + + ++S SL+ PA Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIK-SKNEQLITIQSEEIILSLNGFPA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +FPN+ + E + + + + T F++A + R L G+ E +L ATD Sbjct: 120 DEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNNKLICAATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ + + + + IVP + EL+++++ + + + ++I +G Sbjct: 180 SHRLAIRETLLSSDVKA-NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTLGTTTLY 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLY-VSENQLK 291 S+L++G++P+ ++P + + + Q R+++L++E V L ++E+ +K Sbjct: 239 SRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLASEWANNNVNLEIINESTIK 298 Query: 292 ITANNPEQEEAEEI--LDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 I++N + + E +D ++ I F+ +++D L A+K E + + S+ + I Sbjct: 299 ISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEEKITLSFGGSMRPILI 358 Query: 350 EDAASQSAAYVVMPMR 365 E +A +++ P+R Sbjct: 359 EAGEQSAAVHLISPVR 374 >UniRef50_Q1RIS7 DNA polymerase III subunit beta n=15 Tax=Rickettsia RepID=DPO3B_RICBR Length = 379 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 14/378 (3%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 K VE + L++ L S + R + L N+ L DG L L+ T++++ + ++ VQ Sbjct: 3 KVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKI-GVQ 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G TV + DI + LP+ L + + RF+L TLP FP +D+ Sbjct: 62 VVSEGELTVSTKTLNDIVKKLPDSELTLTDLGTTGLEITGKNCRFNLFTLPVESFPVMDN 121 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 E F + A ++IE+T+FS++ + RY LNG+ + E +TDGHRL+V S Sbjct: 122 INPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVKDSEFYAASTDGHRLSVSS 181 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDN---PLRVQIGSNNIRAHV-GDFIFTSKLV 237 + + + + VI+P+K E+++++ N + + + SN I+ + I SKL+ Sbjct: 182 VVLAEKIEDFGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIMLSKLI 241 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY +P+N L + R AI++ EKFR V+L +S L+I+A Sbjct: 242 DGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEISAIGE 301 Query: 298 EQEEAEEILD--------VTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 + A+E+++ YSG ++IGFN Y+ DVL A+K + V + + + V Sbjct: 302 ARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFSSVSAPVL 361 Query: 349 IEDAASQSAAYVVMPMRL 366 I+ S +VVMP+++ Sbjct: 362 IKFPESPKDIFVVMPVKV 379 >UniRef50_A5KS03 DNA polymerase III, beta subunit n=6 Tax=candidate division TM7 RepID=A5KS03_9BACT Length = 366 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 172/370 (46%), Gaps = 10/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK TV +E+L K L V G+ LPIL N+LL+ + L + T+LE+ + + Sbjct: 1 MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHI-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + GA TVPAR + LP+G + + +EG + + +G +++ + A +FP L Sbjct: 60 KVAQNGAITVPARLMAEFISNLPKG-NVELSVEGAHLHIAAGAYSSTINGMEAEEFPELP 118 Query: 121 DWQSEVEF--TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 +P MKR + T + + R +L G+ + +L ATDG+RL+ Sbjct: 119 TINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFAATDGYRLS 178 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 IG IVP + +++R+L + + + +R +GD TS+L+D Sbjct: 179 --ERKIGAMKEDLKXIVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVTSRLID 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV--SENQLKITANN 296 G+F DYR+++PK D + + A++ + E + L + L I + Sbjct: 237 GQFVDYRQLIPKGADIASVLRKEEFSRITKIASLFARESGGSITLKTDKEKGTLAIHSIA 296 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + E + S A+ ++ N Y+L+ L A+ ++ + +S ++ ++ Sbjct: 297 SQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSSITFRFSGKLSPCRLTATDDEA 355 Query: 357 -AAYVVMPMR 365 +++MP++ Sbjct: 356 TYQHIIMPLK 365 >UniRef50_C4DK83 DNA polymerase III, beta subunit n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DK83_9ACTO Length = 380 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 20/381 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V+R+ L + + L RP++P+L L+ V+DG L+++G D E+ + V Sbjct: 1 MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVSSQVTLP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ V + +I + LP + V EG + + G +RF+L T+P D+P+L Sbjct: 60 TSDASGSALVSGKLLAEIVKALP-AKPVDVAAEGSHVEITCGSARFTLPTMPVEDYPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D E T+ A + T + D + G+ E G L +ATD +R+A+ Sbjct: 119 DMP-EAVGTIDAAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLALLATDRYRMAIR 177 Query: 181 SMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGS------NNIRAHVGDFIF 232 +P +V ++P K + + + L + + + + Sbjct: 178 DLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVGFAADGRRT 237 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 TS+++DG+ P R ++P L L R ++++ E+ +RL V + L + Sbjct: 238 TSRVLDGQLPPLRSLIPVTYAAELRVNAAELASVARRVSLVT-ERNSPLRLNVDGDGLVV 296 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE-- 350 A E A E +D YSG M++ FN Y+LD L+A+ T+ V ++ Sbjct: 297 EAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISAPVAVFSFTEPGKPVTLKGD 356 Query: 351 ------DAASQSAAYVVMPMR 365 D +++ P+R Sbjct: 357 KANADDDGDFSGYTHLLQPLR 377 >UniRef50_O83048 DNA polymerase III subunit beta n=4 Tax=Treponema RepID=DPO3B_TREPA Length = 371 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 173/372 (46%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK E+E LK + + + I N+LL L++ TD ++ + V Sbjct: 1 MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR--SGRSRFSLSTLPAADFPN 118 G TTV K ++ LP EI + L E++++ + + F L TL FP Sbjct: 60 NVLAEGTTTVFCDKLVNVVSALP-TKEIELTLCEEQLVITPPNKKISFQLRTLSHESFPC 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + V +P + ++ +I T F+++ R+++NG+ + + + V+TDG RLA Sbjct: 119 FPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGVHVDFQYGNIICVSTDGKRLA 178 Query: 179 VCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S S S VIVP K + + R L + + + I S ++ G + F+S L+ Sbjct: 179 YIEKKGESSPQSFSGVIVPTKILGIVNRKLTP-EGSVTLCITSQHVYFFFGGYKFSSVLI 237 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN- 296 +G+FP+Y+RV+P + ++ G L +A R ++L +K + + + + L +++ Sbjct: 238 EGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSSKAH 297 Query: 297 ---PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 E +A+E + Y+G I N Y+ + L + V++ TD ++ + Sbjct: 298 TQENEIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSKEVQVEFTDPAKALTLRAVP 357 Query: 354 SQSAAYVVMPMR 365 + +++MPM+ Sbjct: 358 NTDCFHIIMPMQ 369 >UniRef50_C3RP22 DNA polymerase III subunit beta n=4 Tax=Bacteria RepID=C3RP22_9MOLU Length = 369 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 180/369 (48%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F ++R LL L + + + R LP+L + + D L LTG+D ++ + ++ Sbjct: 1 MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60 Query: 61 Q---PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + ++ G + +R DI R + L+G + S+F L+ D+P Sbjct: 61 EDLTIYQTGGVVLNSRYILDIVRKIDSDEIKIEILDGALTRISGATSKFDLNGTDVLDYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +D ++ + L ++K +I T+F+ + ++ + L G+ F+ +L ATD +RL Sbjct: 121 RIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINFKAGNRQLECTATDSYRL 180 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 A + + + + + ++ +P+K + E+ ++++ D + + + + + I ++L+ Sbjct: 181 AKKIVSLDEDV-TFNITIPQKSLDEISKIIER-DEMIEMYVSDRKVLYVFDNNIIQTRLI 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPD R++P D L+ L A R ++L+NE+ ++L +S+ ++ +++ Sbjct: 239 DGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKVVLSSYMQ 298 Query: 298 EQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E EEILD + Y G + I F+ Y D + A ++++ T + I+D Sbjct: 299 EIGSVEEILDKSFYKGTPISISFSSKYATDAIRAFNEPKIKILFTGEMKPFIIKDFEKDD 358 Query: 357 AAYVVMPMR 365 +V+P+R Sbjct: 359 VIQLVLPVR 367 >UniRef50_D2MMX4 DNA polymerase III, beta subunit n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX4_9FIRM Length = 373 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 171/371 (46%), Gaps = 7/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++++ + L ++S + P L + ++V +L LT +D ++ + ++ Sbjct: 1 MKFSIKKNPFVTALSELSHAVSTNSPQPSLRGIKIEVKVDSLVLTSSDADISIQKKIISD 60 Query: 61 Q-----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + E G + A+ +I R L ++G + ++ F ++ + Sbjct: 61 EENDLNVQEEGHLLIEAKYLLEIVRKLDSDHIFVESIDGTYTQFKGHQALFKINGMAVHQ 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + +E L + T LIE T F+ + Q+++ L G+ FE + +L ATD + Sbjct: 121 YPAIDFNKPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNNQLVCTATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMR-MLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLA + + S ++ +P K + ++ +L + + + I+ + + IF S Sbjct: 181 RLARKVVDLD-SQDQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRIDNMIFQS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +++DG +P +++P LE L +A R + L +E + RL + +Q +T+ Sbjct: 240 RILDGDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLINDQAILTS 299 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E E+ E L + G ++I F+ SYV++ L L E V + + + Sbjct: 300 RSQEIGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVLVQFKGMMKPFILTSIDD 359 Query: 355 QSAAYVVMPMR 365 S +V+P++ Sbjct: 360 PSTIQLVLPLK 370 >UniRef50_Q6AQJ6 Probable DNA polymerase III, beta chain n=1 Tax=Desulfotalea psychrophila RepID=Q6AQJ6_DESPS Length = 376 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 183/375 (48%), Gaps = 12/375 (3%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + TV ++ LL+ L + T+ IL N+L++ ++G L+LT TDLE+ + + + Sbjct: 4 QCTVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIK-AE 62 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 H G+ T+P++K F+I R + E +++++G+S ++L+ + + ++P + Sbjct: 63 IHGEGSLTLPSKKIFEIVRESGSEKISIEEKENSWVVIKAGQSTYNLAGMASDEYPEFPE 122 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFET----EGEELRTVATDGHR 176 + + + LIE FS+A++ + Y L +LFE + L+ +++DGHR Sbjct: 123 YDEDSFTVFESYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMISSDGHR 182 Query: 177 LAVCSMPIGQSLPSHSV----IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 L++ + L + V ++P+KGV E + D D+ + V + + + Sbjct: 183 LSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKDS-IEVSFEHDKLILRNNQDVM 241 Query: 233 TSKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 L G FP Y+ ++ + LE + R + + + F ++L + ++ + Sbjct: 242 VVSLKTGEFPQYKAIVDAVQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQLAIDKDFMV 301 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 +++ N + A++ + YSG + +GFN Y +D L A++CE ++ + S S I Sbjct: 302 LSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYFIDTLQAMECEKIKAYINSSNSPCLINS 361 Query: 352 AASQSAAYVVMPMRL 366 ++MPM+L Sbjct: 362 DDDPGFTSIIMPMQL 376 >UniRef50_A9D4N4 DNA polymerase III, beta chain protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4N4_9RHIZ Length = 385 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 17/380 (4%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ-VADGTLSLTGTDLE-MEMVARVALV 60 T R LL ++ G + R T+P+L NLLL+ AD L ++GTDL+ M VA Sbjct: 7 LTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGLRVSGTDLDVMTTVATGLDA 66 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 +P + T+PA DI R LP+ AE++++ +G +M + SGRSRF+L TLP AD+P L Sbjct: 67 EPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDGSGQMTLTSGRSRFNLQTLPGADWPRL 126 Query: 120 DDWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + F +P A + A F+++ ++ RYYLNG+ L TVATDGHRLA Sbjct: 127 QEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMHAIDNRLVTVATDGHRLA 186 Query: 179 VCSMP-----IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLR--VQIGSNNIRAHVGDFI 231 + + +I+PRK V + + L + + N I +G Sbjct: 187 RAVYSAAVGVMPAADAMPGIIIPRKTVGLVAKALAAAAKDATLAIAVSENMISFELGATR 246 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 SKL+DG FPDY RV+P L QA R +I+S+E+ R V++ + Sbjct: 247 IASKLIDGTFPDYERVIPIANPNSWRFDVAALLQATERVSIISSERGRAVKMAWGRESID 306 Query: 292 ITANNPEQEEAEEILDVTY-SGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 +T NP+ E ++ + V +G E+EIGFN Y+ D+L + ++ + L + E Sbjct: 307 LTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHM-SKSGSVHLNTGGDPARFE 365 Query: 351 DAASQS----AAYVVMPMRL 366 + +V+MPMR+ Sbjct: 366 PVHADDDEIAMTFVLMPMRV 385 >UniRef50_Q21QE8 DNA polymerase III, beta subunit n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QE8_RHOFD Length = 378 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 10/375 (2%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVALV 60 K T + L LQ V+G + +L ILGN+LL +DG ++ GTDLE+E+ A + Sbjct: 4 KLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDGRITAVGTDLEVEVNATQHVG 63 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 +TTV +RK DI + + + + E + +++ F LS LPA DFP + Sbjct: 64 SFTGALSTTVESRKLMDILQTMANDEPVTLASENPDHLVLTGANGTFKLSCLPADDFPRM 123 Query: 120 DDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + F + Q +K LIE T F+MA D+RYYL GM F EG L +DG R+A Sbjct: 124 EIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVVEGGRLTVCTSDGFRVA 183 Query: 179 VCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + S+P+ VI+PRK V+EL R+ D+ + VQ+ +N R G F +KLV Sbjct: 184 TDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQARIRFGALEFVTKLV 243 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN----QLKIT 293 +G+FPD R V+P++ D + L A RAA++ ++K GVR + + LK+ Sbjct: 244 EGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRFILDHDLISGHLKVE 303 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS--VQIED 351 ++N + E + + V YSG ++IGFNV Y+LD L ++ +++ + + ++ + Sbjct: 304 SSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLVLAFSHTLVPGAALMTL 363 Query: 352 AASQSAAYVVMPMRL 366 + Y++MPMR+ Sbjct: 364 PSDDHFKYILMPMRI 378 >UniRef50_B7CCH7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH7_9FIRM Length = 372 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 180/372 (48%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVA----- 55 M F+++R++ L VS + LP L + + + D +++LTG+D + + Sbjct: 1 MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISIRTVIVPG 60 Query: 56 RVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAA 114 + + E G+ + ++ +I R L + I +++ + + + S +F+L+ + + Sbjct: 61 ELNNLDIEEEGSIIIDSKYLLEIVRKL-DCKNIEIEVIDYSLVRISSDNGQFNLNGIRSN 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 ++P++D Q + F L +K ++ T F+ + +D R L G+ F ++G L TD Sbjct: 120 EYPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNFNSQGNMLYCSGTDS 179 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 +RLA ++ + S ++ +P K + E++R + D+ + + S + I + Sbjct: 180 YRLARKTIELDSSQ-DFNITIPSKSLTEVVRSVSD-DDTIDIFADSKKAQFVFDKTIIQT 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+DG FPD +R++P + + + R + N+K ++L + + + Sbjct: 238 RLIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQETHVKT 297 Query: 295 NNPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + E ++E+L Y G E+ + N +Y+LD + AL CE V + + + +++ + Sbjct: 298 YSSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVLIEFSGFMKPIKVSNPE 357 Query: 354 SQSAAYVVMPMR 365 S +++P+R Sbjct: 358 DASVLMILVPIR 369 >UniRef50_A4XFI2 DNA polymerase III, beta subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFI2_CALS8 Length = 367 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 168/370 (45%), Gaps = 9/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V++ L + +V +L +L++ D + T D+ M+M Sbjct: 1 MRFVVDKSTLQDNISKVIPAAASTKVTSVLECVLIEAED-VVVFTTNDMRMQMQTEFQ-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E GA V A+ DI + LP G +I + E + +R + F L TL DFP +D Sbjct: 59 EILERGAALVKAKLLSDIVKKLPSG-DIEIIREDNEVKIRCQKIEFRLPTLDPLDFPKMD 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + ++ F+ + + R G+LFE EG+ + V DGHRLA+C Sbjct: 118 RKPIDSFCEFAANEFEDAMDKVIFATSKDETRPTFTGVLFEREGDSVNLVGMDGHRLAIC 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + S IVP + + ++ +++D + +RV N +G L+ G Sbjct: 178 KLKPIEVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIVTLISG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVR---LYVSENQLKITANN 296 RF DY+ V+P + D+L+ RA+I+S ++ V+ VS ++ + + Sbjct: 238 RFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFRVMSYS 297 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + EE + G ++ IGFNV Y LDVL L V + +T S ++ + Sbjct: 298 TD-GRYEEDVLCDVEGKDIRIGFNVKYFLDVLKVLDGG-VDIYITSLTSPSVVKQQGDEG 355 Query: 357 AAYVVMPMRL 366 Y+V+P+++ Sbjct: 356 YIYLVLPVKM 365 >UniRef50_Q89B36 DNA polymerase III subunit beta n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=DPO3B_BUCBP Length = 371 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 223/369 (60%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L+K L++V+ + PIL N+LL D T++LT T+++ME+ + V Sbjct: 1 MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIIILDV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG+ TV +K +IC+ LP+ + +Q ++ + S +++ L+TLP +FPNL Sbjct: 61 TLLEPGSITVSGKKILNICQNLPKDHNLKIQYINNKLKIVSHNNQYLLATLPIKNFPNLK 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++ F + Q +K ++ AT FSMA QD+R +LNG+ FE + L VATDG+R+A+C Sbjct: 121 ISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHLYAVATDGYRIAIC 180 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P+ S+I+PRKGV+EL+++L+ + + + I +N + + IFTSK++ Sbjct: 181 KKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNLIFTSKIIT 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 +FPDY ++ + K + L K+A +R AILSNE FRGV + +N+L IT +N Sbjct: 241 EKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKLLITTSNQH 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA---SQ 355 EEA EI+D+ Y+ ++++ N SY++D+LNA++ + + + D S+QI+ + Sbjct: 301 DEEASEIIDIIYTNIKIKMSINASYMIDILNAIQDQEICLSKNDVTHSIQIQAHHYKIAP 360 Query: 356 SAAYVVMPM 364 A Y++MP+ Sbjct: 361 KAIYIIMPL 369 >UniRef50_B5Y6P1 DNA polymerase III, beta subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6P1_COPPD Length = 361 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 183/367 (49%), Gaps = 7/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + +E L++ L+ V + + T P+L N+LL+ D L +TGTD++ + ++AL Sbjct: 1 MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIAL- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E TTVPA+ F D + P G+E+ +++ + + SG + LSTLP ++P L+ Sbjct: 60 EAAEELRTTVPAKFFSDFVKKAP-GSEVQLEVGENYLSISSGSASLKLSTLPPEEYPELE 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVR-YYLNGMLFETEGEELRTVATDGHRLAV 179 Q FT+ AT+K+ ++A + +++ ++R L G+L + L V TDGHRLA Sbjct: 119 VLQG-NTFTVDAATLKKAVDAVKKNVSKGELRNPVLEGILLDGSEGMLIAVGTDGHRLAA 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 C + + + +P + ++ L + + G + + ++G Sbjct: 178 CKTDLQVT---ETACLPADVLSDVCDTLVNTGSTAYITFGDGEVAFENDVIYAVIRTLEG 234 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FP +R V+PK + + + RA +L+ VRL + + L I+A PE Sbjct: 235 QFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSLTISAEVPEL 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + V G +++I N +Y+ DVL+ + +NV LT + + I S++ Sbjct: 295 GSFVESIPVDKEGPDLKIACNYAYLQDVLSGIDEDNVVFGLTSPLHPIVIRPVESENYVG 354 Query: 360 VVMPMRL 366 +VMPM+L Sbjct: 355 LVMPMKL 361 >UniRef50_O67725 DNA polymerase III subunit beta n=2 Tax=Aquificaceae RepID=DPO3B_AQUAE Length = 363 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 177/369 (47%), Gaps = 9/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V+RE L + L++ + LPIL N LL + L + TDLE +V V Sbjct: 1 MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E V ++K +DI + L A + + EGE++++ G+S + L T PA DFP Sbjct: 61 VEEEG-EVCVHSQKLYDIVKNL-NSAYVYLHTEGEKLVITGGKSTYKLPTAPAEDFPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E TL + IE ++++A ++ L GM + + V +DGHRLA+ Sbjct: 119 EIVEGGE-TLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYEDRIHFVGSDGHRLALY 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 P+G+ S +++PRK + L +++ G D + + ++ +L++G Sbjct: 178 E-PLGE--FSKELLIPRKSLKVLKKLITGIEDVNIEKSEDESFAYFSTPEWKLAVRLLEG 234 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPDY V+P+ + + + + R LS K V++ +SEN +PE Sbjct: 235 EFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFEFADPEF 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS--A 357 EA E ++V Y+G EIGFN Y+++ L+A E V T ++ +E + Sbjct: 295 GEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDSERVWFKFTTPDTATLLEAEDYEKEPY 354 Query: 358 AYVVMPMRL 366 ++MPMR+ Sbjct: 355 KCIIMPMRV 363 >UniRef50_Q04HR5 DNA polymerase III, beta subunit n=2 Tax=Oenococcus oeni RepID=Q04HR5_OENOB Length = 374 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 178/375 (47%), Gaps = 13/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V+R L L VS + G+ +PIL + + V++ ++L G++ E+ + + Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 Q------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 + EPG A F +I + L + + EG ++ + G S F+++ A Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSDK-VEISTEGSQIAIVGGSSDFTVAGQSAD 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 ++P L +P + + +I T +++ QD R L G+ F +++ V+TD Sbjct: 120 NYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIKAVSTDS 179 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HRL+ IG V+VP K +IEL +L+ DN L +Q + + +G+ F S Sbjct: 180 HRLSQRITKIGND-SQADVVVPSKALIELRALLENIDN-LNLQFDRSQLLVDLGETTFYS 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGV-RLYVSENQLKIT 293 +L++G++P R++P + L + RA++++++ V +S+++L ++ Sbjct: 238 RLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQDKLVLS 297 Query: 294 ANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + E L + + G +++I FN +V D L+++ + T ++ I Sbjct: 298 TAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSIGESKLDFSFTTNLRPFVIRPN 357 Query: 353 A--SQSAAYVVMPMR 365 + ++ P+R Sbjct: 358 GASDNNKVQLITPVR 372 >UniRef50_B1C8Z4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8Z4_9FIRM Length = 368 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M V+R LK L VS R L +LL+ D LSL T+ E+++ + Sbjct: 1 MNIKVDRNEFLKALITVSKATTLRNVGS-LEGILLESYDDVLSLYATNKEIQIST-IIDA 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + +R DI R G E + + S+F+++ + FPN + Sbjct: 59 KVIREGKLLINSRILSDIVRSFDNGEVEIDADENNNIKLTCLNSKFNITAMDHRTFPNKE 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDV-RYYLNGMLFETEGEELRTVATDGHRLAV 179 + + ++ +I+ T F+ A D L G+L E E+++ VA DG R+A+ Sbjct: 119 VYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKFVAIDGFRMAI 178 Query: 180 CSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S + + +VP + EL ++L D+ + + I A++G S L+ Sbjct: 179 RSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLVSSLLQ 238 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNP 297 G+F DY +LPK ++ + L A RAAI+S+E + + L+ ++N L +T+ + Sbjct: 239 GQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLLTSKSA 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EE +++ SG +++I FN YV+D L ++ E V + S S I+ +S Sbjct: 299 -YGNVEENININLSGEDLDISFNSRYVIDALKVIEDEKVILEFNSSNSPCLIKPVSSNKF 357 Query: 358 AYVVMPMRL 366 Y++MP+R+ Sbjct: 358 TYLIMPVRI 366 >UniRef50_A8SK33 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SK33_9FIRM Length = 368 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 173/366 (47%), Gaps = 7/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + + LL + + + IL +L V D L+L TDLE+ + Sbjct: 1 MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTE-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G + A +I R LP E+ ++++ E++ ++S ++F++ + +P Sbjct: 60 KVEKEGEVLLNASMISNIVRKLPND-EVYIKVDREKVFIQSENAKFNIIAMDIYSYPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++++V+F + + +K + T F+ A D R LNG+ E E + + VA DGHR+A Sbjct: 119 TFENKVDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKNVDFVALDGHRIAKR 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S I + + VI+P + + E+ +++ G + + V + + + IF+++++DG Sbjct: 179 SFKIEEDI-EKKVIIPPRALNEISKIVPEG-SVVGVSLVKGSAIFTFENTIFSTRVIDGE 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNPEQ 299 + +Y+ + + L A RA I+ EK V + ++ + + + E Sbjct: 237 YLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVE-GSSEI 295 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ-SAA 358 + ++I+D+ G ++I FN YVL+ L ++ + V + + I+ Sbjct: 296 GDLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIEQDFVEITFNGRAGACIIKPEDENIDYT 355 Query: 359 YVVMPM 364 Y+V+P+ Sbjct: 356 YLVLPV 361 >UniRef50_B0MRG5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG5_9FIRM Length = 365 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 166/366 (45%), Gaps = 7/366 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF+V++ +L L + + + L + L + L++TG DLE+ + + + V+ Sbjct: 3 KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTID-VE 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G + +R DI R +P G + E ++ + +S+ + + ++P L + Sbjct: 62 GESDGVLVLNSRLICDIVRKMPSGVIRFDEYEPLKLNLMCEDITYSIMGINSEEYPVLPE 121 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 F + + +K +I T +++A D + L G FE + EL ++ DG R+A+ Sbjct: 122 LSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISVDGIRIAIRK 181 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +VP K + EL+R+L ++ + V + N + + S+L++G Sbjct: 182 ESLLH--EDFDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSRLLEGD 239 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR-GVRLYVSENQLKITANNPEQ 299 F +Y +++ + L + R +L N+K + V S+N L++ Sbjct: 240 FFNYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFCETA-I 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + ++ + YSG E I FN Y+LD L C+ V+ + ++++I S + Sbjct: 299 GKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFV-QNTALKIVPLEGDSFTF 357 Query: 360 VVMPMR 365 +V P+R Sbjct: 358 IVSPVR 363 >UniRef50_C2KY13 Possible DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KY13_9FIRM Length = 374 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 173/369 (46%), Gaps = 8/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ LL LQ V + + TL I+ +L+ +G + LTG + + + Sbjct: 1 MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIE-SICPG 59 Query: 61 QPHEPGATTVPARKFFDICRGLP--EGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFP 117 EPG + AR F +I + LP EG I + E ++ +S F + +F Sbjct: 60 DILEPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDEFT 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +L + + + Q +++ +I T FS A + + G FE + A DGHR+ Sbjct: 120 SLPSVEKQEIVEISQLSLRNMINQTIFSTASGENNKKMTGEYFEIIDNQFSITALDGHRI 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKL 236 A+ + +S + S IVP++ + EL +++ GG ++ + + ++ D I ++L Sbjct: 180 AIRKTELSESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTIVVTQL 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR-GVRLYVSENQLKITAN 295 V+G + R++L + + + + RA IL+ + + + L + + L + Sbjct: 240 VEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSLSLKIV 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + + + V G ++ IGFN +Y++D L ++ E V + T S S V I D + Sbjct: 300 S-DIGRMDAEMPVQQEGKDLLIGFNPTYLMDALQNIEEEEVDLYFTISRSPVFIRDQE-E 357 Query: 356 SAAYVVMPM 364 S Y+++P+ Sbjct: 358 SYNYMILPV 366 >UniRef50_C1ZD41 DNA polymerase III, beta subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD41_PLALI Length = 377 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 174/376 (46%), Gaps = 15/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV------ADGTLSLTGTDLE-MEM 53 M+ R L V + R IL N+ L A + LTGTD + + Sbjct: 1 MQLVCPRAVLSAAFTVVGAVVPSRTPREILKNVKLDAVASGPGATSSAQLTGTDGDGTSI 60 Query: 54 VARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + V+ G+ +P ++ I R L + +++++ G+ + +R G S F LS Sbjct: 61 RFDLTDVECKVGGSALLPTQRLTSILRELTDD-TVSLEVNGDAVWLRCGGSEFRLSAEDP 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 ADFP ++ E F +P +RLI+ T F+ + RY L G+L E +++R ATD Sbjct: 120 ADFPTAPEFVEEDYFVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRMAATD 179 Query: 174 GHRLAV----CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 RLAV CS+ S +VP K + + + L + + I +N+I G Sbjct: 180 SRRLAVAVGACSVEGQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDISIRAGR 239 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 T++LV GRFPDYR+V+P + ++ A ++ +++NE+ RGV +E Sbjct: 240 ASITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFTFAEGT 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSVSSVQ 348 L++ + + +++ L + Y G+E+ I F+ +V D L L+ V + L + S Sbjct: 300 LRLASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFLRVLEGSSTVHLKLINDESPGV 359 Query: 349 IEDAASQSAAYVVMPM 364 YV+MP+ Sbjct: 360 FT--TDDDYTYVIMPL 373 >UniRef50_C2BTM3 DNA polymerase III beta subunit n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BTM3_9ACTO Length = 380 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 157/378 (41%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + R+ L + + S + RP + +L + ++ + + + D E+ VA Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + EPG V + + R LP A+ + E + + G + L + + ++P L Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKFATEDNYLHITCGSFKQKLIMMHSEEYPPL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E + A I + + + L G+ E ++L +ATD +R+A+ Sbjct: 121 PQMP-ESAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPDKLYLLATDRYRMAL 179 Query: 180 CSMPI-GQSLPSHSVIVPRKGVIELMR-MLDGGDNPLRVQIGSNN---IRAHVGDFIFTS 234 MP G ++V K + + + + GD + V +N I +FTS Sbjct: 180 KEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAANGRVFTS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKIT 293 ++ DG +PD RR+ P+ + D + R AI+S+ + + L + QL+ Sbjct: 240 QINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSGQLEFL 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI---- 349 A N + A + + +G ++ + FN +L+ L A+ R+ D V I Sbjct: 300 AGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAIDEPYARLSFKDEAKPVVITGQK 359 Query: 350 --EDAASQSAAYVVMPMR 365 + + Y++MP+R Sbjct: 360 EETGEDNLTFRYLIMPIR 377 >UniRef50_C1TP63 DNA polymerase III, beta subunit n=2 Tax=Synergistaceae RepID=C1TP63_9BACT Length = 386 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 166/371 (44%), Gaps = 5/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+++ +K + TL +L +L DG ++L TDL+ + + V Sbjct: 1 MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG +P + ++ + P E ++ SGR+R+ +T PA DFP L Sbjct: 61 TIDEPGKAVLPIKVVGELFKKSPTSIFTVEVAERGTGILLSGRNRYRFTTYPADDFPPLP 120 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAH-QDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + +F L + + R+++ + + ++ YL L + + E V+TDG RL+ Sbjct: 121 SPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGECHCVSTDGRRLS 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIR--AHVGDFIFTSKL 236 + + + P +++P V E +R+L G L+V + + + F+ + Sbjct: 181 LSKAYVDKENPEQDMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQLDSLEFSVRR 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ-LKITAN 295 VD FP+Y R+L N L+ A R ++ + R V L +S LK++ Sbjct: 241 VDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSPGGDLKLSGR 300 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 PE EA EI+D G +++ FNV +++D L A + V + + + Sbjct: 301 APEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKVSLSFNGQEGQMMMLRPNES 360 Query: 356 SAAYVVMPMRL 366 Y++MP++L Sbjct: 361 DFLYMLMPIKL 371 >UniRef50_A6AHE8 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Vibrio cholerae 623-39 RepID=A6AHE8_VIBCH Length = 250 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 162/247 (65%), Positives = 199/247 (80%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ER HL+KPLQQVSG LGGR +LPILGNLLL+V + LS+T TDLE+E+++RV L Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TVPARKF DICRGLP+ A I V LEG+R+ VRSGRSRFSL+TLPA+DFPN++ Sbjct: 61 GEFEAGCITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEV+ +L QA ++ LIE TQFSMA+QDVRYYLNGMLFE +G LR+VATDGHR+AV Sbjct: 121 DWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVA 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 +G +IVPRKGV+EL+++LD + P+ +QIG +N+RA V F+FTSKLVDGR Sbjct: 181 QAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGR 240 Query: 241 FPDYRRV 247 FPDYRRV Sbjct: 241 FPDYRRV 247 >UniRef50_A6CJV3 DNA polymerase III subunit beta n=2 Tax=Bacillus RepID=A6CJV3_9BACI Length = 374 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 176/374 (47%), Gaps = 11/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ + L K L V + G P++P+L + ++ L LTG D ++ + + L Sbjct: 1 MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60 Query: 61 Q-----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 Q PG VP R F ++ + +P+ I ++ +++ + SG +LS L D Sbjct: 61 QADAGRIIAPGKLVVPVRYFHNLIKKMPDDTFIKIKKFNKQVKITSGEIETTLSLLNEED 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P + + + + +I+ TQF+++ D R L G+ +E +L +AT+ Sbjct: 121 YPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTLIATNSQ 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 R+A+ + + S I+P K + EL+ +D +++ N + D ++ Sbjct: 181 RMAMRKAAMSSPVTG-SFILPGKAMTELVNAIDKH-QFIQIYPSDNLVIFQADDLFLYTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVS-ENQLKIT 293 L+ G +PD +++P+ + L Q RA +L++E K V ++ E ++++T Sbjct: 239 LISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNEGRIQLT 298 Query: 294 ANNPEQEEAEEIL-DVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++ E E L + G ++I F+ ++ + L ++ E V + S+ + I+ Sbjct: 299 SSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMSEELVSLSFGGSLRPIIIKP 358 Query: 352 AASQSAAYVVMPMR 365 +S +++ P+R Sbjct: 359 YNKKSTIHLISPVR 372 >UniRef50_C0QD86 DnaN n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QD86_DESAH Length = 371 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 9/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+ +R+ L + L QV G G + L I ++L++V+ + +T DLE R Sbjct: 1 MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + A+K ++I R P+ ++E + + ++ + + +FP Sbjct: 60 EIESDGIIAINAKKLYEIIREYPDAQVPLNEIENRWVEIGKDNIQYHIVSSDYENFPETP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQ-FSMAHQDVRYYLNGMLFET----EGEELRTVATDGH 175 + + A K+++E + + + + R Y+ G LFE GE LR V+TD Sbjct: 120 LIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVSTDSR 179 Query: 176 RLAVCSMPIGQSL--PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 RL L P +VI+P+KG+ EL R LD + + + I +++ + Sbjct: 180 RLNSFDASYEGELVLPDENVIIPKKGLSELGRFLDR-EGSVNIGIKDDHLIVQKQNETLM 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 KL++G +PDYRRVL + +E +L R +ILS+E ++ V +EN+L +T Sbjct: 239 IKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENELVVT 298 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 NPE E++E + + Y G E FN Y +D LN++ + V + + + I+ Sbjct: 299 ITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINSDTVILNVKGAKHPCIIKGLD 358 Query: 354 SQSAAYVVMPMRL 366 +M M + Sbjct: 359 DDQLVCAIMAMSV 371 >UniRef50_D0WL07 DNA polymerase III, beta subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WL07_9ACTO Length = 377 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 18/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MK VE + + V+ + RP+LP+L + ++ DG+++L+ D ++ A + Sbjct: 1 MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHAVIEA 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 +PG T V R D R LP I ++L+G ++ V G S S+ ++P D+P+ Sbjct: 61 A-VDDPGTTLVHGRLLSDFARALP-NKPIDMELKGAKLEVVCGSSHISMQSMPLEDYPSA 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 EV + A + + + + D L + E EG+ + +ATD +RLAV Sbjct: 119 PPMP-EVSGVVDGALWQETVAQVVTAASSDDTLPLLVSVCIEIEGKTMSLMATDRYRLAV 177 Query: 180 CSMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSN----NIRAHVGDFIFT 233 + + S ++V + ++ + L G + + I ++ I Sbjct: 178 RDLTWEPANEDASHRILVRASRLSDIAKAL-GSVGKVELAIDNSGRTGMIGFSAAGRHNV 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 ++L+DG +P R + P + G + A RA ++ EK VRL SE Q+ + Sbjct: 237 ARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVV-EKNSAVRLSFSEGQVILE 295 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ----- 348 A + + E L+ T G ++ + FN S++ + L A VR+ T + Sbjct: 296 AGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSAPYVRLSFTSASKPAVLTAQP 355 Query: 349 -IEDAASQSAAYVVMPMR 365 I+ Q ++MP+R Sbjct: 356 EIDGEDDQEFRLLLMPIR 373 >UniRef50_A1AV49 DNA polymerase III, beta subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A1AV49_RUTMC Length = 367 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 199/369 (53%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + + LL PLQ V + + LPIL ++L+Q+ D L+LT TD+E+E+ A ++ Sbjct: 1 MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRAS-QII 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E + T+ A+ DI + L E I +E ++ ++ ++ F L+T DFP+L Sbjct: 60 KNQEEISFTIYAKDLIDIIKKLSEDIIIEFIIESSKIYIKVNKNSFELNTSNHQDFPSLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + +K LIE T FSM QD+R YLNG+ E + + VATDGHRL++ Sbjct: 120 KIKNSDIIKIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNSIVVVATDGHRLSIG 179 Query: 181 SMPIGQSLPS-HSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + +L + SVI+PRK V EL ++L+ G + + + N + S+L+D Sbjct: 180 KVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLISNNTTIISRLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FP+Y +VLP N + + + +A+I E+ +GV+L ++L I +++ E Sbjct: 240 GNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFKNSKLHIFSHS-E 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS-SVQIEDAASQSA 357 + +A+ +++ E+EI FN++Y++ +L L + M++ D S S + Sbjct: 299 RGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEINMIVPDGKSQSCLLSSMNDDIY 358 Query: 358 AYVVMPMRL 366 YVVMPMR+ Sbjct: 359 QYVVMPMRI 367 >UniRef50_B9ML38 DNA polymerase III, beta subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9ML38_ANATD Length = 368 Score = 296 bits (759), Expect = 8e-79, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 170/370 (45%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V++E L + +V IL +L++ D + T D++M+M Sbjct: 1 MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAED-RIIFTTNDMKMQMQTEFE-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G+ + A+ DI + LP G ++ V E + +RS + F L TL DFP +D Sbjct: 59 EILERGSALLKAKLLSDIVKKLPSG-DVEVIREENEVKIRSQKIEFRLPTLEPLDFPKMD 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEEL-RTVATDGHRLAV 179 SE + ++ F+ + + R G+LFE E ++ V DGHRLA+ Sbjct: 118 RKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFEKEDDDFVNLVGMDGHRLAI 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + S S IVP + + ++ +++D + +RV N +G L+ Sbjct: 178 CKIKPVAVEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVILTLIS 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVR-LYVSENQLKITANN- 296 G+F DY+ +P + D+L+ RA+I+S ++ ++ + N + T + Sbjct: 238 GKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFTVKSV 297 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 EE + + G ++ +GFNV Y LDVL L E + + +T S ++ + Sbjct: 298 SADGRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDGE-INLFITSQTSPSIVQKPDDPN 356 Query: 357 AAYVVMPMRL 366 Y+V+P+++ Sbjct: 357 YIYLVLPIKM 366 >UniRef50_C0EA16 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA16_9CLOT Length = 340 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 163/339 (48%), Gaps = 5/339 (1%) Query: 30 LGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIA 89 + +LL+ + L LTG DL++ + + V+ EPGA + AR F DI R +P+ Sbjct: 1 MEGILLECENNNLKLTGYDLDLGITKTIQ-VETVEPGAIVLNARLFSDILRKMPDEQITI 59 Query: 90 VQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQ 149 + + + F++ + ++P++ FT P +K +I T F+++ Sbjct: 60 TSDQKLLTRIEGIDTEFNILGMSRDEYPDMPAVDDSQGFTAPDYLLKNMINQTLFAISVN 119 Query: 150 DVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDG 209 D L G LF+ ++ V+ DG+R+A+ I S S +VP K + E+ ++L Sbjct: 120 DQTPVLTGSLFDLNSGKMSVVSVDGYRVALRKENI-ASDTDVSFVVPGKTLAEITKLLSD 178 Query: 210 GDNPLR-VQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFA 268 + + V +GS +I + + S+L++G + DY+ +P+ + A + Q+ Sbjct: 179 QEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVVQSIE 238 Query: 269 RAAILSNEKFR-GVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 R +I+ N++ + V+L + + +T + + + + T G + I FN Y++D Sbjct: 239 RTSIIINDRNKSPVKLVTEGSTINLTCEST-IGKVSDRFEATVEGDPIRIAFNNKYMIDA 297 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L +C+ + + + +S ++I ++V+P+RL Sbjct: 298 LKHTECDQIYIDINGPLSPIKIIPTEGDDFLFLVLPVRL 336 Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 19/169 (11%) Query: 10 LLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATT 69 L + Q + P+L L + G +S+ D + R + + Sbjct: 105 LKNMINQTLFAISVNDQTPVLTGSLFDLNSGKMSVVSVDG-YRVALRKENIASDTDVSFV 163 Query: 70 VPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTL---------PAADFPNLD 120 VP + +I + L + E R+ V S F ++ D+ + Sbjct: 164 VPGKTLAEITKLLSDQEEAMT-----RVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAI 218 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT 169 T+ + IE T + ++ + TEG + Sbjct: 219 PEGHTTRIVADTRTVVQSIERTSIIINDRNKSP----VKLVTEGSTINL 263 >UniRef50_O54376 DNA polymerase III subunit beta n=76 Tax=Streptococcaceae RepID=DPO3B_LACLM Length = 380 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 170/376 (45%), Gaps = 12/376 (3%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF++ + L+ +G + T+P L L ++V + ++L G++ ++ + + Sbjct: 3 KFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADN 62 Query: 62 ------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 G+ + A F ++ LPE ++ E +++L+ SG+S +L L + Sbjct: 63 KDASMLISGTGSVLLEAAFFENVVSQLPEVTLEFIEKEQKQVLLTSGKSEITLKGLDSEI 122 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEELRTVATDG 174 +P+L + + +K + T F+++ Q+ R G+ E EL+ VATD Sbjct: 123 YPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELKAVATDS 182 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HR++ +P+ + VI+P K + + + + + I + + + S Sbjct: 183 HRMSQRLLPLEDTDLKFDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNETISYYS 242 Query: 235 KLVDGRFPDYRRVLPKNPDKH--LEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLK 291 +L++G +PD R++P D L L+ RA +L+ G V+L VS + + Sbjct: 243 RLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSVV 302 Query: 292 ITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 TAN+PE E L + G ++ I FN Y++D L +K VR+ +V ++ Sbjct: 303 TTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEVRIRFISNVRPFTLQ 362 Query: 351 DAASQS-AAYVVMPMR 365 +S ++ P+R Sbjct: 363 PRNEESGFVQLITPVR 378 >UniRef50_B6YRT5 DNA polymerase III beta subunit n=26 Tax=Bacteroidales RepID=B6YRT5_AZOPC Length = 374 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 91/359 (25%), Positives = 158/359 (44%), Gaps = 3/359 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + LL LQ V + + +PIL L Q++D L++TG D E + ++ Sbjct: 1 MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-GERMLVRSGRSRFSLSTLPAADFPNL 119 G +P++ D R LP+ V E +L+ ++S ++P Sbjct: 61 NAEGEGKFAIPSKNLLDALRELPDQPITFVINETNNEVLIYYENGKYSFIAQNGDEYPTS 120 Query: 120 DDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 Q EV E + + I +T F+ AH ++R +N + F+ + E + VA+DGH+L Sbjct: 121 KPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPERVIFVASDGHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S S I+PRK L +L + + N I + F S+L++ Sbjct: 181 RLKNSRLSGNKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLISRLIE 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G +P+Y V+P + A R + SN ++L + N++ ITA + + Sbjct: 241 GHYPNYNAVIPNESPYRIIVDRLNFLNALKRVTLFSNPGNSLIKLQILANKIFITAQDID 300 Query: 299 QE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 AEE++ Y G E+ IGF +Y++++LN + + L D + I ++ Sbjct: 301 YSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSNEIIFELADVTRAGLILPKENKE 359 >UniRef50_C0R0U9 DNA polymerase III beta (Beta clamp) subunit n=2 Tax=Brachyspira RepID=C0R0U9_BRAHW Length = 375 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 175/372 (47%), Gaps = 6/372 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ ++K + + G+ I N+L ++ L+LT TD + +R+ L Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRIILD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFS--LSTLPAADFPN 118 GA V A+K I + +P+G E E++ + S + + + DFP Sbjct: 61 DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKINIESENGKTKHLIIGMKTDDFPA 120 Query: 119 LDDWQSEVE-FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + ++ LP + +I T S+A + + L G+ FE + VATDG R+ Sbjct: 121 YPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFEKTDSKFLAVATDGRRM 180 Query: 178 AVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSK 235 AV G S S+I+ K + E++ + + +++ + + VG + F S Sbjct: 181 AVIEREFEGVENGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQVGKYDFVSS 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITA 294 L++G++P++R+V+PK + L A R + N+ + + + L VSE LK+ Sbjct: 241 LIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLKVKG 300 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N E E+ E +D+ YSG E + +N +Y+ DV+ + E V M+ S +++ Sbjct: 301 INQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEIVTFMVNKDSSPTMVKEIER 360 Query: 355 QSAAYVVMPMRL 366 + Y++MPM + Sbjct: 361 EDYYYIIMPMSI 372 >UniRef50_Q04WF6 DNA-directed DNA polymerase, beta subunit n=7 Tax=Leptospira RepID=Q04WF6_LEPBJ Length = 373 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 172/376 (45%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V LK + V G + R IL NL ++ + + L+ TDLE+ + ++ Sbjct: 1 MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-------RMLVRSGRSRFS--LSTL 111 + + G+ ++PA++ + + E + LE + SG++ + +S + Sbjct: 60 EVIQAGSISLPAKQLSSFFKTI-HFEETILSLEESDGDSSIVYITDASGKNDYKSKISGM 118 Query: 112 PAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 A + + + P + +I T +++AH+D R+ NG+ +G +L V Sbjct: 119 DAEEIKTISKVSPSQISSFPSNLINDMIRKTSYAIAHEDQRFIFNGLYMIPDGNKLTFVG 178 Query: 172 TDGHRLAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 TDG RL + L S+IVP K V E+ +M+ + + + + I A + Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAVREISKMIATSETG-NLGLIDSQIYASANNI 237 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 KL++G FP+Y +V+PK+ + + + + + + E R V+L S+N L Sbjct: 238 ELLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSRQVKLTFSKNNL 297 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 + A EA + YSG E+ I F Y++D+ ++ +++ +DS S V + Sbjct: 298 NLFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSIDDNEIKIEFSDSSSPVIFK 357 Query: 351 DAASQSAAYVVMPMRL 366 D + V+MPM+L Sbjct: 358 DPSDPEFISVIMPMKL 373 >UniRef50_Q8D3I6 DnaN protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3I6_WIGBR Length = 369 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MKF++ RE++L LQQ+ ++PI+GN+L+ V + ++ +TGTDLE E+ ++ L Sbjct: 1 MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + EPG TTV +K DI + P+ + I L+ E++ + +S+F L TLP +FPNL Sbjct: 61 ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNEKLFILCKKSKFVLCTLPYKNFPNL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++W+ +++ + + +K+LIE+T FS+A+QD+R YLNGML E + +R+V+T+GHRL+ Sbjct: 121 NNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIRSVSTNGHRLSK 180 Query: 180 CSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + I +++ + I+PR GV L+R+L+ + + + IG +IR ++ +I T+KL++ Sbjct: 181 SKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILTTKLLE 240 Query: 239 GRFPDYRRVLPKN--PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 G FP+Y+ + KN L C +LK R +++S +K + + L + +N L I N Sbjct: 241 GEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVIS-DKSKCINLNLKKNLLIINIKN 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 QE AEE L+ Y G EMEI N Y+LD LN ++ + V++ +T+S S++ + D Sbjct: 300 FNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESKRVKIFVTNSYSAIILADEIYNY 359 Query: 357 AAYVVMPMRL 366 ++++MPMRL Sbjct: 360 TSHIIMPMRL 369 >UniRef50_Q2GAN7 DNA polymerase III beta subunit family protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAN7_NOVAD Length = 415 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 110/385 (28%), Positives = 177/385 (45%), Gaps = 39/385 (10%) Query: 21 LGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPH----------EPGATTV 70 GG+ T+PIL + ++ +DG L+LTG DL+ ++ + P AT V Sbjct: 31 AGGKDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATCV 90 Query: 71 PARKFFDICRGLPEGAEIAV---QLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVE 127 PAR I + + A + V + R+ + +GRSRF ++ LP DFP E Sbjct: 91 PARALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEHS 150 Query: 128 FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQS 187 F++ ++ + + +++ ++ RYYLNG+ + + R ATDGHRLA Sbjct: 151 FSIAAGALRDVFARVEHAISTEETRYYLNGVYMHPQDLDQRFAATDGHRLARLVQDGPDG 210 Query: 188 LPSH-SVIVPRKGVIELMRMLDGGDN----------------PLRVQIGSNNIRAHV--- 227 S +VI+ R+ V L ++LD + V SN + Sbjct: 211 AASFPAVIIGRRTVAVLDKLLDAAGKVDTSTSDDADKACSRPMVEVDSDSNGRVIYWAMP 270 Query: 228 ----GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 G+ +K VDG FPDY RV+P P L + L A R A + ++K R V+L Sbjct: 271 APDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTRAVKL 330 Query: 284 YVSE-NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD 342 + + ++ +PE +A E + Y+G + IGFN Y L+A+ + V M TD Sbjct: 331 ELDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSAVATDKVLMKFTD 390 Query: 343 SVSSVQIEDAASQSAA-YVVMPMRL 366 + +IE +SA V+MP+R+ Sbjct: 391 AGGPCRIEAEGGESALVQVLMPLRV 415 >UniRef50_C2D9K3 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9K3_9ACTN Length = 369 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 158/370 (42%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V ++ + + V + + TLP+LG + +Q TL+L DL++ + ++ Sbjct: 1 MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G T VP + + LP+ A I ++ + ++ +S + LSTL AADFP Sbjct: 61 -VEEEGQTVVPGLFLSKLVKNLPD-APITMETTPTQAILTCLKSTYELSTLDAADFPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D LP + ++E L G+ + +L ATD HRL + Sbjct: 119 DITPSQSIELPSDLLNDMVERVYRVTKEDISNPILGGITLVAQENKLTMYATDSHRLVII 178 Query: 181 SMPIGQSL--PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + I+P EL+ L L++ + N + + + S ++ Sbjct: 179 DTNTETASIDSEFTAIIPAVCFHELLN-LPTITPRLQIGLTDNQVIFSFENTTYVSLKIE 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ--LKITANN 296 G FP+Y+ + P + L + L QA R A+++ K GV V + + A++ Sbjct: 238 GMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITLKADS 297 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNA-LKCENVRMMLTDSVSSVQIEDAASQ 355 E ++E T G + N ++L+ + + + + DS + I+ + Sbjct: 298 SEFGASKEEFSATIEGNPISFSMNYQFILECCRSTTHADEMTFEIVDSFQPIVIKSFGTM 357 Query: 356 SAAYVVMPMR 365 + +++P+R Sbjct: 358 NYQCLLIPLR 367 >UniRef50_A5EX08 DNA polymerase III, beta subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX08_DICNV Length = 414 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 112/414 (27%), Positives = 198/414 (47%), Gaps = 48/414 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + ++ L K L ++ + + TL IL ++ L++ + L+L TD E+ + ++ ++ Sbjct: 1 MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 GA T+P KF+ + + +G I +L ++ + +G++ L+TLPA DFP Sbjct: 61 NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQQFHIHAGKTIVKLATLPAKDFPIPL 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRLA 178 D +L + L+ ++++A+QD R YLNG+L +G L V+TDGHRLA Sbjct: 121 DNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGHRLA 180 Query: 179 VCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDN------------------------- 212 + +++ + IVP K V EL++ L Sbjct: 181 CAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNEQID 240 Query: 213 -------------------PLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 253 P+ + + +G + F+++L+DG++P YR+V+P + Sbjct: 241 ILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPLQQE 300 Query: 254 KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGA 313 + L A RA +L ++ GVRL+ + L +TA N E E E L++ SG Sbjct: 301 NPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIINSGN 360 Query: 314 -EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +EIG NV+Y++DVL L+ E V++ L + + + +V+MPMR+ Sbjct: 361 LTLEIGLNVNYLIDVLMHLEGETVQLHLENGEQACLLMSKDEPDVRHVIMPMRI 414 >UniRef50_B0MXV3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXV3_9BACT Length = 374 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V LL L + + TLPIL L+++ L +T +DLE +V + + Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-MLVRSGRSRFSLSTLPAADFPNL 119 G PA+ D + E + + + S+ A +P + Sbjct: 61 GVESEGTIAAPAKLMLDSLKEFAEMPLTIEVNDQNWEIRLSWKSGSLSIPGASAVSYPAI 120 Query: 120 DDWQSEV-EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 ++ E TL + I T F+ A ++R +NG+ L V TD H+L Sbjct: 121 PALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVYINLAPSMLTFVGTDAHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + S S I+P+K L +L ++ ++V S N + + +L++ Sbjct: 181 KYEVETANEVAS-SFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTLVCRLIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G +P+Y V+P + L R A+ SN +R+ +++N++ +TA + + Sbjct: 240 GNYPNYNAVIPTANPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRINLTAQDID 299 Query: 299 QE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS- 356 A E + +Y G + IGF ++++++L+ + + + L DS + + Sbjct: 300 FSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPTIVIELADSTRAGVFKPVYDDKQ 359 Query: 357 ---AAYVVMPMRL 366 ++MPM + Sbjct: 360 SSATLMLLMPMMI 372 >UniRef50_C8WSN6 DNA polymerase III, beta subunit n=5 Tax=Alicyclobacillus acidocaldarius RepID=C8WSN6_ALIAD Length = 370 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 169/367 (46%), Gaps = 10/367 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +E++ L L ++ R +L +L++ G ++L+ D ++ + V Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML--VRSGRSRFSLSTLPAADFPN 118 +PG +PA+ F ++ R LP+G + + + G + L +FP Sbjct: 60 SVVDPGGVVLPAKLFAELVRRLPKGTVDVATIAPHHLSASIDVGTTHAELHGFDPEEFPE 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDV-RYYLNGMLFETEGEELRTVATDGHRL 177 L D + L T+ +E+ ++ A ++ R L G+ EG +L +ATDG RL Sbjct: 120 LPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVYVGYEGGKLIWMATDGLRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKL 236 A S + + + S +PR+ + EL R+LD D PL+V ++ + + +L Sbjct: 180 ARVSQTVEREM-SIRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNVQLFGRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 G +PD RV+P+ L++A R IL+ + V LYV + L++T+ + Sbjct: 239 YQGEYPDTSRVMPREFAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVLELTSRS 298 Query: 297 PEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALK-CENVRMMLTDSVSSVQIEDAAS 354 E+ A E + V + G E++I N YVLD ++A + + ++M + S D + Sbjct: 299 AERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQMQVARDRRSALFSDESD 358 Query: 355 QSAAYVV 361 +++ Sbjct: 359 N--VHLI 363 >UniRef50_B0VFV2 Putative DNA polymerase III, beta chain (DnaN-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFV2_9BACT Length = 389 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 177/390 (45%), Gaps = 27/390 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 M+ +E++ LL +Q + + + T PIL N L++V + + ++ TDLE+ +V Sbjct: 1 MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G V A F +I +P+G I + + ++++ G+ F+L FP Sbjct: 61 AA-VSEGGTVAVSAHHFNEIINYMPDGV-INLWRNDDLLMIQCGKVDFNLLIADHTLFPV 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + T+ R+I T F+++ R LNG+ ++ + ATDG ++A Sbjct: 119 IPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKIYPDHHIMAATDGRKVA 178 Query: 179 VCSMPI--------GQSLPSHSV-----------IVPRKGVIELMRMLDGGDNPLRVQIG 219 + P ++ ++P K ++ L ++ + L+V + Sbjct: 179 EIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKELKVGLE 238 Query: 220 SNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR 279 N I G++ +S++++ +FPDY++ P L A R A+++ + Sbjct: 239 HNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALVAPDDNL 298 Query: 280 GVRLYVSENQLKITANNPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 + + ++ ++ +N + EA+E + D T++G+ I FN Y+L +L A+ E V + Sbjct: 299 RIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAIDTEKVVI 358 Query: 339 MLTDSVSSVQI---EDAASQSAAYVVMPMR 365 L S ++ I Q +++MP+R Sbjct: 359 KLGTSKDAMMIYNETPLPDQEITFLLMPLR 388 >UniRef50_C9LP65 DNA polymerase III, beta subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP65_9FIRM Length = 369 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 150/369 (40%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T + + L L++V + T + DG + D + + Sbjct: 1 MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIGIRT-FCEA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNL 119 E G+ + + + +P G + Q +GE + ++G+ T A+FP + Sbjct: 60 DVEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGESTVFFKAGQYNSHFPTRDTAEFPLV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + ++ F+ + G+L + AT+ HRLA Sbjct: 120 TEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINENVFTMAATNSHRLAA 179 Query: 180 CSMPIGQ-SLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + + IV + +++R+L G D+ + + S ++ G+ F S L+ Sbjct: 180 REISLEEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLSNLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANN 296 +G +PDY+RV P + D + ++A + +S + ++ + L+ + Sbjct: 240 NGVYPDYKRVFPSSFDLNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAFEED 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 P+ +E + GA+++I FN +YV D+L K E + + + + +E ++ Sbjct: 300 PDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKIILHVK-KNGPMVVEQEEDKA 358 Query: 357 AAYVVMPMR 365 YVV PMR Sbjct: 359 YRYVVTPMR 367 >UniRef50_D0YTZ8 DNA polymerase III, beta subunit n=2 Tax=Mobiluncus mulieris RepID=D0YTZ8_9ACTO Length = 388 Score = 286 bits (733), Expect = 8e-76, Method: Composition-based stats. Identities = 74/379 (19%), Positives = 153/379 (40%), Gaps = 17/379 (4%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + + RE L + + S + RP +P++ + + + D + V ++ Sbjct: 9 ELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPLE 68 Query: 62 PHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G V + + R LP E++ + E + + G L +P D+P L Sbjct: 69 LITEGTVVVDGKLLSETARALPNKISEVSFKTEDNYLHITCGSFHQQLLVMPEEDYPQLP 128 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +V + I + + + L G+ E E+L +ATD +R+A+ Sbjct: 129 QLP-QVVGQVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPEKLCVLATDRYRMALK 187 Query: 181 SMPIGQSLP--SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN-----IRAHVGDFIFT 233 +P + P + ++V K + + + + + + + + + G +FT Sbjct: 188 EIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAGGRLFT 246 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKI 292 S++ DG +PD RR+ P+ + A R AI+S N + + L ++ L+ Sbjct: 247 SQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQGTLEF 306 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 A + + A + + V +GA++ + FN +++ L+ + VR+ D V I Sbjct: 307 RAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLSVVDEPYVRLSFKDETKPVIITGQ 366 Query: 353 ASQ------SAAYVVMPMR 365 + Y++MP+R Sbjct: 367 KEETGDDSLDFQYLIMPIR 385 >UniRef50_C6V443 DNA polymerase III, beta subunit n=2 Tax=Neorickettsia RepID=C6V443_NEORI Length = 372 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 187/365 (51%), Gaps = 6/365 (1%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 TV+++ L + L + + T+ L ++ ++ ++ LT TD E+ + + ++ Sbjct: 9 ITVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 A +V A + ++I + LP + + +E + ++VRS R FSL L A FP + + Sbjct: 69 VIDAAISVDAFRLYEIVKRLPTDVGVVLSIEKDNLVVRSKRIEFSLPYLDAKHFPLISEE 128 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 + + ++ L +F+ +++ R +LNG+ FE++GE++ ATD HRLAV ++ Sbjct: 129 EKIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGEKITVAATDVHRLAVATL 188 Query: 183 PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS--NNIRAHVGDFIFTSKLVDGR 240 L S I+P+K V E++++ + L + + I+ G SKL+ G Sbjct: 189 TKKTGLK-FSCIIPKKTVSEMIKLSSSKEVELFLHGREYISRIKMVFGSVRLNSKLIAGT 247 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP++ V+P++ L L + R ++S ++ R + + + QL + A+N + Sbjct: 248 FPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYLDASNSDAS 307 Query: 301 EAEEILDVTY-SGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E+L++ +G E+ I FN Y+LD+L+AL + V M ++ S V + +SA Y Sbjct: 308 FGRELLELNEDTGEEISIYFNHVYLLDILSALDNKEVTMKFNNATSQVLFQ--GDESALY 365 Query: 360 VVMPM 364 VVMPM Sbjct: 366 VVMPM 370 >UniRef50_C5JAN5 DNA polymerase III subunit beta n=1 Tax=uncultured bacterium RepID=C5JAN5_9BACT Length = 372 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 182/373 (48%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV R+ ++ L V + + LP+L + LL+ A +++ GTDL++ + Sbjct: 1 MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDIVISEECR-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q G+ VP DI + L ++ E ++ +R GRS F LS LPA FP++ Sbjct: 60 QTQIEGSLCVPGVLLHDIVKRLEGYDTLSFSHED-QLFLRCGRSEFRLSVLPAEQFPDVS 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRLA 178 F + A +K++I+ + M D LN + T E +L V+TD H+LA Sbjct: 119 QLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQLA 178 Query: 179 VCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI------ 231 + + + + L ++V RK + E+ R+L DN +V +G+++ R Sbjct: 179 LSKISLEKKLDLQTGLVVGRKAITEIRRLLLD-DNAKQVTLGASHARIQCDVVTDDLVIM 237 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 FT++LVDG +P+Y +V+ + + +L+ A R ++ + +G+ L S N + Sbjct: 238 FTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNLMT 297 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 +TA + + +E L++ + G I N Y+L+++ + E V + + ++ I+ Sbjct: 298 MTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDTEQVEIHADNPHEAMHIKP 357 Query: 352 AASQSAAYVVMPM 364 + Y++MP+ Sbjct: 358 FGLEYPHYMIMPL 370 >UniRef50_Q7VH41 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VH41_HELHP Length = 353 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 75/364 (20%), Positives = 161/364 (44%), Gaps = 13/364 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ + L L L R I ++ + D L L TD E+ + + + + Sbjct: 1 MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYINIP 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TV ++ DI + L + + ++ + + + + G++R L A +FP Sbjct: 61 -CQAQGNATVNGKQILDIIKRLKDD-NVTIETKQDSLHISQGKARTKLPMFNADEFPKFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + + I+ ++ + +Y LNG L + + VATD RLA+ Sbjct: 119 EYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDIKDYSFNFVATDTRRLALI 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S+ + S+++P+K + E+ ++ L + ++ D+ F +KL+ G+ Sbjct: 179 EYK-NPSINALSLVIPKKAINEIQKLFVD---TLEIYHNPTHLILKNNDYTFYTKLISGK 234 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +PDY +++PK + D A L+N +++ +S N++ + N E Sbjct: 235 YPDYEKIIPKEFKHKIVLPKDKFVDALQFVKSLAN----NIKITLSPNEVLFESLNEESG 290 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EA ++V + + +G N Y+LD L+ + + + + + + S++ + V Sbjct: 291 EASTQIEVQTNIENLTLGINSKYILDFLSQIDANEFTLCINEPNTPFVVM---SENFSTV 347 Query: 361 VMPM 364 +MP+ Sbjct: 348 IMPV 351 >UniRef50_C5NVV0 DNA polymerase III, beta subunit n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NVV0_9BACL Length = 379 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 173/378 (45%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 MKFT+ + + L L VS + IL + +++ L L +D + + V Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60 Query: 58 ----ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 ++ E G +P+R F +I R P I ++ G +LV+SG+S F++ A Sbjct: 61 EDDKEVITIEEEGQVVLPSRNFIEIIRKAPTD-LIEIETVGNNILVKSGKSEFNVKGYDA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 D+P E L +I+ T F A D R L G+ F + L ATD Sbjct: 120 NDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNKILTATATD 179 Query: 174 GHRLAVCSMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 +RL+ + + S ++I+PRK + RM++ G + + + +N I + + + Sbjct: 180 SYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLYYQNVV 239 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQL 290 +T L+ G +P+ +++P + A A R A++S E K ++L V++N L Sbjct: 240 YTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLVVTDNLL 299 Query: 291 KITANNPEQEEAEEILDV--TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 ++++ + E A E L V T + EI + Y+ D + A+ E + + + +++ Sbjct: 300 EVSSQSKELGSAVEELKVSSTLEDEKFEISVSGKYLKDAVAAVAAEEIIVKFSGELTAFI 359 Query: 349 IEDAA-SQSAAYVVMPMR 365 I+ + + +++P+R Sbjct: 360 IQPSDYHREIIELILPVR 377 >UniRef50_Q8ZSE2 DNA polymerase III beta subunit n=2 Tax=Nostocaceae RepID=Q8ZSE2_ANASP Length = 456 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 159/376 (42%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MK ++E+ L + L+ + +PT PILGN+LL DG +S TGT+L + + Sbjct: 1 MKLSIEQSKLAEILETAYFAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTT- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 G +PA+ D + EI +++E + ++ + L +FP L Sbjct: 60 ANVETSGQVALPAKLLTDTINNV--RGEITLEVENQACIITHNSGKCRLIGGKPDEFPTL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ +E L ++ +E T + + + L G+ F+ + + + +T+GH+LA+ Sbjct: 118 PKGENPIEVNLSAKKLQAALEGTLYCTNGDETKLVLTGVNFKIDTNKWQAASTNGHKLAL 177 Query: 180 CSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNP--LRVQIGSNNIRAHVGDFIFTSKL 236 + + VP K + EL ++L + + + + I + S+L Sbjct: 178 VTGTLDSEYSDPIDFTVPGKSLSELSKILSQSADTSVCNILLSNKTIEFSLPHTKVISRL 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL--YVSENQLKITA 294 ++G +P ++P+ + + A R + L+ K + V++ + Q + Sbjct: 238 LEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQATLYT 297 Query: 295 NNPEQEEAEEIL---DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 + +A + + T + IG N+ Y+L+ L + + + + V I Sbjct: 298 EATDIGDAVDSVLMKPATNHSENISIGLNIDYLLEGLKHISTDEIVVRCNKPTQPVIICP 357 Query: 352 AAS-QSAAYVVMPMRL 366 + Y+VMP+ + Sbjct: 358 MGGLLNQLYLVMPVEI 373 >UniRef50_C7REZ6 DNA polymerase III, beta subunit n=5 Tax=Anaerococcus RepID=C7REZ6_ANAPD Length = 370 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 167/373 (44%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + ++ L+ + + + I + + + +LSL D E+ + +V V Sbjct: 1 MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V A +I R LP I ++ + ++ ++ S F+L D +++ Sbjct: 61 -VDEEGEMAVKASLISNIVRKLPNDIVI-IENKNGKISIKCSSSSFNLIAFDYYDKNDIN 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + +KR I T+F+ + + + L G+LFE + + VA DG+R+++ Sbjct: 119 -IPETKPIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNMVALDGYRVSLK 177 Query: 181 SMPIG--QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + I+P++ ++E R++ D ++ N++ G K++D Sbjct: 178 KIKLDYPTDYEDSEYIIPKRSLLEWSRIVSD-DLTTKLYKNENDLIFTSGSTTMQCKVID 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNP 297 F DYR ++ + + L + RA +LS+ + +++ +S+N + I +N+ Sbjct: 237 KNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIELSDNVMLIKSNS- 295 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA----A 353 E + E +DV G ++EI FN Y+ + + A +++ S++ I Sbjct: 296 EIGDVREAIDVEQKGNDLEIAFNARYMQEGVKACDSSKIKLNFKSSLNPCLIYPENSSYE 355 Query: 354 SQSAAYVVMPMRL 366 + Y+V+P+RL Sbjct: 356 DEDFTYLVLPVRL 368 >UniRef50_B8DV07 DNA polymerase III, beta subunit n=20 Tax=Bifidobacteriaceae RepID=B8DV07_BIFA0 Length = 374 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 163/377 (43%), Gaps = 16/377 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V + + + RP PIL + L+ ADGT+ L+ E+ + Sbjct: 1 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V + DI + LP + + M + SG + F+L +P +++P+L Sbjct: 60 GVDESGTVVVLGKLLADISKVLP-AEKTYLSANETTMTITSGPATFTLQLMPESEYPDLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + T + + ++AH + R L G+ GEE+ +TD RL Sbjct: 119 QLPPQI-GQVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLSSTDRFRLGRA 177 Query: 181 SMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN---IRAHVGDFIFTSK 235 S ++ + +V ++++ R +D N + + + N I I T + Sbjct: 178 SFRWTPDEADLDTAALVRGSHLVKIARSVDERAN-VVIYLDPANPKLIGIANAGRISTVQ 236 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG FP R+ + + L A R ++++ E+ +R+ ++ QL +TA Sbjct: 237 LIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVA-ERNAPIRMVFTDQQLTLTAG 295 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 ++ A+E L + G ++ + FN SY+ + L+ + +RM +T +V V+ + Sbjct: 296 GADEASAKETLQIDLDGEDITVAFNPSYLREGLSVISEPYIRMKMTTAVKPVEFNGQQDE 355 Query: 356 S------AAYVVMPMRL 366 Y+++PMR Sbjct: 356 DGEESMSYRYLLVPMRF 372 >UniRef50_C7LJX6 DNA polymerase III, beta subunit n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LJX6_SULMS Length = 371 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 171/370 (46%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF LL+ L+ + + LPIL N L ++ + L++T +DLE+ M + + Sbjct: 1 MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLNI 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +P + +I + +PE + + ++ + S + LS + ++P Sbjct: 61 NSIN-FGSAVIPHKILLEILKKIPEQPLTFCKEKENKLKILSQNGEYDLSIFSSEEYPKY 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ F + + + +I T F++ + ++R LNG+ F+ E V+T+ + L Sbjct: 120 SLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDIENNISNFVSTNSNFLVK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ +I+P+K + L L+ +N + + N L++G Sbjct: 180 YSIKDLSFNKEIRLIIPKKPLNILKYNLNDTNNNVYISYNDLNTSFFFKKKKIICSLING 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+Y+ ++ K +K L + A R + SN + L S+ + +I++ + Sbjct: 240 NYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISSFDINY 299 Query: 300 E-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED----AAS 354 +A E L Y G +EI FN Y++++L+ + CE+++ + ++ SS +I + Sbjct: 300 NKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINCEDIKFEMLNNNSSCRITPLMKNSKK 359 Query: 355 QSAAYVVMPM 364 + ++MP+ Sbjct: 360 EEILILIMPL 369 >UniRef50_UPI00016C54E2 DNA polymerase III, beta chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E2 Length = 375 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 169/376 (44%), Gaps = 15/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T +R+ LL Q V + R T P+L N+ D ++L D E+ + + + Sbjct: 1 MKVTCQRDSLLTACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYELRGI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ +P + I R EI++ E ++ ++ +F + +L +FP++ Sbjct: 61 TVARAGSCILPITELVKILRE-SSDPEISLDAGKEAVVAKTSGGKFEMPSLDVNEFPDIP 119 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAHQDV--RYYLNGMLFETEGEELRTVATDGHRL 177 ++ + + ++ ++ T F+ +D R+ L G+L+E +G+E R VATD RL Sbjct: 120 EFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARLVATDTKRL 179 Query: 178 AVCSMP--IGQSLPSHSVI--VPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 AVC + + I VP K V L + L +RV + +N+ Sbjct: 180 AVCKGEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDALFKTERATIY 239 Query: 234 SKLVDGRFPDYRRVLP---KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 + LV G+FP YR ++ K + + +AAI+++++ V + + Sbjct: 240 TSLVQGKFPPYRDIIGKTTKEATQKVPLPVQGFLSRVRQAAIMTDDESMRVDMTFDPGSV 299 Query: 291 KITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCE-NVRMMLTDSVSSVQ 348 + A + +E L++ Y G EI F+ SY+++ L A++ E V + ++ + Sbjct: 300 VMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENEPTVVLEMSTGTRAAL 359 Query: 349 IEDAASQSAAYVVMPM 364 + +Y+VMP+ Sbjct: 360 FT--CGDNYSYLVMPL 373 >UniRef50_Q72H86 DNA polymerase III, beta chain n=6 Tax=Thermaceae RepID=Q72H86_THET2 Length = 375 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 183/381 (48%), Gaps = 21/381 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M TV ++ L L + + R P+ L L +G L L GT+ E+++ R+ Sbjct: 1 MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-----EGERMLVRSGRSRFSLSTLPAAD 115 P VPA+ FF + R LP G +A+ L +G ++ + SGR R LS PA Sbjct: 61 AQSLP-RVLVPAQPFFQLVRSLP-GDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEG 118 Query: 116 FPNL--DDWQSEVEF----TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT 169 +P L + + + F +P + + + +++ ++++ R G+ E + R Sbjct: 119 YPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFRA 178 Query: 170 VATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSNNIRAHVG 228 VA+DG+RLA+ +P+ Q + +V VP + V E++R+L G D + +G + + Sbjct: 179 VASDGYRLALYDLPLPQGFQAKAV-VPARSVDEMVRVLKGADGAEADLALGEGVLALALE 237 Query: 229 D---FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 +L++G FPDY+RV+P+ ++ + L++A R ++LS+ + V L + Sbjct: 238 GGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRVDLLL 297 Query: 286 SENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 E ++ ++A + + +E + G M + +N Y+L+ L + + + ++ S Sbjct: 298 EEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPV-GDRAHLGISGPTS 355 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 I + VV+P+R+ Sbjct: 356 PSLIWG-DGEGYRAVVVPLRV 375 >UniRef50_D2MK63 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK63_9BACT Length = 281 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 146/279 (52%), Gaps = 9/279 (3%) Query: 97 MLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLN 156 + +++GR F + LP+ DFP L + E LP + +LI T F++ D RY LN Sbjct: 3 VTIKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLN 62 Query: 157 GMLF----ETEGEELRTVATDGHRLAVCSMPIGQSLP-----SHSVIVPRKGVIELMRML 207 G+L E E +R V TDGHRLA+ + VIVP+K E+ R+L Sbjct: 63 GLLIVVTTEGESPMIRLVGTDGHRLAMAEQKLETDAKAPVEQEQKVIVPKKAAAEIRRLL 122 Query: 208 DGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAF 267 + G + + N + + TS+L++G +P+Y++V+PK +K + A + L+ A Sbjct: 123 EEGGDEPMIGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEGAL 182 Query: 268 ARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 R ++LS K V+L S+ + + +++P+ EA + + ++G E GFN Y+LDV Sbjct: 183 RRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLLDV 242 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L ++ E V + + S+S I + + VVMP+++ Sbjct: 243 LGVMESETVVLNMEASLSPCLIREEDNPLFQAVVMPVKV 281 >UniRef50_Q7MTT8 DNA polymerase III, beta subunit n=2 Tax=Porphyromonas gingivalis RepID=Q7MTT8_PORGI Length = 377 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 8/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V LL+ LQ ++ + R TLPIL ++L ++ L LT D+ M + + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60 Query: 61 QPH-EPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G+ VP R + + LP+ + +E + + +S + +P Sbjct: 61 NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDVSTYPV 120 Query: 119 LDDWQSEVEFTL-PQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 E ++ P + + AT F+ + + R + G+ + ++L V +DG L Sbjct: 121 AASLSPEAIVSIVPAEALLSGLSATLFATSQDERRPIMTGVYLDFFEDKLVFVGSDGQIL 180 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 QS + +PRK + L +L + + + SN + +G++ ++L+ Sbjct: 181 VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLRARLL 240 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +GR+P+Y V+P + ++ L R +I SN +R+ + ++++AN+ Sbjct: 241 EGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLSANDI 300 Query: 298 EQE-EAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + AEE + M IGF +L + E V M L D + I A + Sbjct: 301 DFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPSEEVIMTLADQTRAGLILPAENA 360 Query: 356 ---SAAYVVMPMRL 366 S +++PM+L Sbjct: 361 PGISLCNLLLPMKL 374 >UniRef50_B0RH70 DNA polymerase III, beta chain n=4 Tax=Actinobacteria (class) RepID=B0RH70_CLAMS Length = 396 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 25/382 (6%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF V R+ + + L R TLPIL +L++ + L+L+ D E+ ++ Sbjct: 15 KFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQ-AD 73 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 EPG V R DI LP A + E ++ V G + F+L ++P ++P L Sbjct: 74 IEEPGRVLVSGRLLADIANRLP-NAPVRFTTEDSKITVSCGSAHFTLLSMPVEEYPTLPQ 132 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + LP + + + DV + G+ E L +ATD +R+AV Sbjct: 133 ISEQSGL-LPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGLIATDRYRVAVRE 191 Query: 182 MPIG-----QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN----IRAHVGDFIF 232 + S + +VP + + E+ + G + V I + I Sbjct: 192 IDWDGGDSTTDGTSRTALVPARTLQEIGKTF-GHSGTISVAITDTDDRQLIAFSADKKTV 250 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 TS L+ G FP +R+ P+ D + L +A R ++ E+ +R + + L + Sbjct: 251 TSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFTIDGLTL 309 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT---DSVS--SV 347 A E +A E +D +G + + ++LD L A+ E VR+ T + V Sbjct: 310 EAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKTDNPNKPGPV 369 Query: 348 QIED------AASQSAAYVVMP 363 I A + + Y++ P Sbjct: 370 LITSQSSKDQAGADNYRYLLQP 391 >UniRef50_C1SNE0 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNE0_9BACT Length = 351 Score = 277 bits (708), Expect = 7e-73, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 152/353 (43%), Gaps = 4/353 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ + +Q + + +L N+L+ ++L TD+++ ++ V Sbjct: 1 MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV +K DI + +P+G+ I +G ++ + SG+S F LST+ FP + Sbjct: 60 SVEETGTATVSGKKLLDIIKEIPDGSVIDFSFDGSKINIDSGKSSFKLSTISHEIFPTMA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E + + + L++ T F ++ + G G++L A D R+A Sbjct: 120 EITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGDKLEISAADFQRIATS 179 Query: 181 SMPIGQSLPSHSVI-VPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ + + +I +PRK V+EL+++LD D + ++ I +G SKL++ Sbjct: 180 SVKFDEEYSNEFMINIPRKTVMELLKILDE-DEYVEIETDRKQIIFTIGQVKIFSKLIEK 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 ++ + + R + +++E GV L + + E Sbjct: 239 YIKSITKLFANDLPLQAKLNRAEFLDVIKRVSAITSEVTHGVVLSFKPGTFTVYSLETEY 298 Query: 300 EEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 E + D Y+G ++I FN +V ++++ + + + + + I Sbjct: 299 GTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTDYFYLHMVGERNPAVIIP 351 >UniRef50_D1B7J0 DNA polymerase III, beta subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7J0_THEAS Length = 379 Score = 276 bits (707), Expect = 9e-73, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E+ ++ G + +++++ + G + L TD++ + V V Sbjct: 1 MKLNIEKGPFIRAWNMAERCAGASSSGAS-SSVMIRSSAGRVELFATDMKTSLRCPVQGV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q G +P + D+ + P+ + LE R + SGRSR+ ST ++FP Sbjct: 60 QSDLDGEALLPVKVLGDLFKKCPD-PSFTINLEEGRGTMVSGRSRYRFSTYDVSEFPKFP 118 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAHQDVRY-YLNGMLFETEGEELRTVATDGHRLA 178 S +F T+ ++ I + + D YL+ + + + LR V+TD RLA Sbjct: 119 SSASAAQFGTVKAQDLRNAISEGGIAASTSDEYPQYLSCVYLQGDQGALRIVSTDSRRLA 178 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDG--GDNPLRVQIGSNNIRAHVGDFIFTSKL 236 P+ S S S+++P + + EL RML G D +R+ + DF F + Sbjct: 179 YSKCPMEGS-SSESMLLPMRAIRELDRMLSGLQEDGDVRILLDQAQAYFISDDFEFAIRR 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN-QLKITAN 295 VDG+FP Y R++PK+ +E + A R ++ + + V + +S + + Sbjct: 238 VDGKFPQYERIIPKSCTTFMEVSRSQMIGALERLDLVVRDFNKMVAVNLSPGGSCTLRSR 297 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +PE +A E ++ G + I FNV ++LD + L+ VR+ + I+ S Sbjct: 298 SPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDGVKGLQDSLVRLEFNGPGGHLCIKRIGSD 357 Query: 356 SAAYVVMPMRL 366 S Y++ P+ + Sbjct: 358 SYLYLLAPLAM 368 >UniRef50_B5CVF7 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5CVF7_9BACE Length = 372 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 168/371 (45%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-LSLTGTDLEMEMVARVAL 59 M+ V + LL L+ V + + TLP N L + + + +T + + V Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + A+ D + + E + + + + M+V+ +F++ +P + Sbjct: 61 KADFVNRSFLASAKTLLDGLKEMSEQP-LTISIYEKEMIVKYANGKFTMPIEDGKQYPEM 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + S F L + + QF A+ ++R +NG+ F+ + E+ V TDG RLA+ Sbjct: 120 NIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLEKTSYVGTDGSRLAM 179 Query: 180 CSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 +P + I+P K L ++ L V++ N++ + ++++ Sbjct: 180 VELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLVCRMIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GR+P+YR V+P+N K + + L A R ++ N V L ++ L ITA++ + Sbjct: 240 GRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLITAHDFD 299 Query: 299 QEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE--DAASQ 355 ++ E + G +EIGF ++++++N++ E++ + +TD + + D + Sbjct: 300 FSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDISISMTDPSRAAVLSRCDEEER 359 Query: 356 SAAYVVMPMRL 366 S Y++MPM + Sbjct: 360 SLTYLLMPMSI 370 >UniRef50_B8F8V2 DNA polymerase III, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F8V2_DESAA Length = 370 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 164/371 (44%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ T+ ++ LL+ + P LG + ++ +L++ TDL+ + + L Sbjct: 1 MQLTIPKQALLRAVLAAEHVAAKDKNFPALGGIRMEAGHQSLTIQATDLDTGYASVLTLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPGA PA++ + PE + + +E + R+R SL+ + DFP + Sbjct: 61 DIQEPGAALPPAQQLKAVIMDWPE-EDARLSVENGFPTITGERTRTSLAGMDPEDFPEIP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFS--MAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + F +P T++ L+ T S + + R ++ G +GE L TDG +LA Sbjct: 120 EPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGAHLARDGEHLVITTTDGCQLA 179 Query: 179 VCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S PI + LP +I+ + G +LM + + + S+++ A + S+LV Sbjct: 180 RGSFPIQDARLPEKGIILHKTGAAKLMEFAKNAPGDVALGVTSSHLSAESQNERLISRLV 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G +PD R++P D A R IL++EK++ L + +++ +T +NP Sbjct: 240 QGDYPDTARIIPV-LDTGFAINRFEFLAALKRVGILTSEKYQAASLALEHSRITVTVDNP 298 Query: 298 EQEEAEEILD---VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 E + E LD + G +N + L + ENV + D+ S + + Sbjct: 299 ELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTSENVEVKARDAASPLVLSGEKD 358 Query: 355 QSAAYVVMPMR 365 +VMPM+ Sbjct: 359 PGYLALVMPMK 369 >UniRef50_D2R8A9 DNA polymerase III, beta subunit n=3 Tax=Planctomycetaceae RepID=D2R8A9_9PLAN Length = 372 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 168/370 (45%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +R+ L+ Q + R IL N+ L V + ++ TD++M + + V Sbjct: 1 MKIVCQRDKLVSAFQTAAMFAPARSPKAILQNVRLDVTNEGCTMMATDMDMGVRVNLEGV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G +P F I R A + ++ +VR RS F L + +FP + Sbjct: 61 EVESTGTALLPVLHFGAILRE-SSDATLKIETTSRGTMVRGDRSEFRLQSEDPEEFPIVA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + A +K++I T+F+ + RY L G+L E G++L V TDG RLA Sbjct: 120 LFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVLIELHGDKLIAVGTDGRRLAKM 179 Query: 181 SMPIGQ----SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 P + ++ I+ + R + DN +++ S+++ F S+L Sbjct: 180 EGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISENDNTVQLAARSSDVLLKTERATFYSRL 239 Query: 237 VDGRFPDYRRVLPKNPDK-HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 V+GRFP +R V P+ D ++ +AA+++++ RG+ ++ L ++A Sbjct: 240 VEGRFPRWRDVFPRRQDAIKIDLTVGPFFSVLRQAAVVTSQDSRGIDFTFADGTLTLSAV 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCEN-VRMMLTDSVSSVQIEDAAS 354 + ++ + ++Y+G+ + + + +V D L L E + + + + S+ A Sbjct: 300 TSDAGQSRVEMPISYTGSAITVTLDHRFVADFLKVLSPEQTIVLEIESAESAAVFT-ADD 358 Query: 355 QSAAYVVMPM 364 + YVVMP+ Sbjct: 359 SAYGYVVMPL 368 >UniRef50_Q1PVD8 Similar to DNA polymerase III beta subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVD8_9BACT Length = 366 Score = 273 bits (698), Expect = 9e-72, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 158/365 (43%), Gaps = 3/365 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + L K + + IL + L+VAD LT TDLE+ + R+ Sbjct: 1 MKILFSGDALHKGFSLTASVVPSSAMKQILQGVKLEVADNCAELTATDLEVLVKYRIPAK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G +PA + +I R EI+V +E ++S F + FPN+ Sbjct: 61 ACEGEGGIVLPASRANNIFREWAGNEEISVTVEAGHCTLQSKGGSFKILGDDCLQFPNIT 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + +++E ++++ +G+ + G+ + V +D +RLAV Sbjct: 121 KTDVTSFVEIDGEILGKMVEKVAYAVSSIKALSIYSGISVKIFGDTIIMVGSDMNRLAVV 180 Query: 181 SMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + S S IV K + L R + L V +G + I S+L++G Sbjct: 181 KRKVRNPENVSMSGIVGVKCLAFLQRFVSECKGTLMVGMGESQIHFIGEKGEVISQLIEG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 ++P+Y V+PKN DK +E D L A+ ++N+++R V +++N+L I ++ Sbjct: 241 KYPNYDEVIPKNNDKKIEVNRDELLSIVRMASFVTNDEYRVVEFSLTKNKLSIFSSAANV 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA + Y G + FN Y+LD L A CE + + L + + + + Sbjct: 301 GEAALEIAAQYDGPDYTNTFNPDYILDFLRASDCETITIELGEIDDAALFKTGHEE--IN 358 Query: 360 VVMPM 364 V+MP+ Sbjct: 359 VMMPV 363 >UniRef50_Q82HZ6 Putative DNA polymerase III beta subunit n=1 Tax=Streptomyces avermitilis RepID=Q82HZ6_STRAW Length = 376 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 159/379 (41%), Gaps = 20/379 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F VER + + + L R +P+LG LLL G LS++G D E Sbjct: 1 MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSVSGFDFEAAARIGTDAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V R+ DICR LP+G ++ LEG R V +G +RF LSTLP ++P L Sbjct: 61 TVAE-GQVLVLGRRLLDICRVLPDGP-VSCVLEGTRFTVEAGGTRFGLSTLPREEYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E ++ + + D L G+ +G+ + A+D +R AV Sbjct: 119 -VPPEPYGSVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTLAASDRYRYAVR 177 Query: 181 SMPIGQSLPSHSVI---VPRKGVIELMRMLDGGDNPLRVQIGS---NNIRAHVGDFIFTS 234 ++ + V+ +P + ++++ R L +R+ I G Sbjct: 178 TLGWQPEAAADGVVEALLPARRLLDIARSLARS-GDVRIGFDRAAGGLIGFEGGRMRTVV 236 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKI 292 +L++GR P Y + E C L +A R A+++ E VRL S + + + Sbjct: 237 RLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVA-EANSPVRLDFSAPDGTVLL 295 Query: 293 TANNPEQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE- 350 A + A+ L SG E+ FN Y+LD LN+ + VR+ L + + Sbjct: 296 GAGYGDDVAAQ-RLPAVLSGAEEVTAAFNPGYLLDALNSFEAPRVRLELLGAGQRTLLTA 354 Query: 351 ----DAASQSAAYVVMPMR 365 + +++M +R Sbjct: 355 VADGGEPDTAHRHLLMSVR 373 >UniRef50_B9K2Q2 DNA polymerase III beta subunit n=1 Tax=Agrobacterium vitis S4 RepID=B9K2Q2_AGRVS Length = 378 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 5/366 (1%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V R +L L V + R +PIL N+LL L L+GT++ +E+ L++ Sbjct: 7 FRVHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLES 66 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEG--ERMLVRSGRSRFSLSTLPAADFPNLD 120 T+ + DI + E AEI + ++ V+SGRSRF L+TL A FP + Sbjct: 67 ASGNPLTLSGKALLDIVKSFSEVAEIEFSFDDLRGQVRVKSGRSRFLLATLHADQFPTIA 126 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG--EELRTVATDGHRLA 178 S + ++ I ++++ R YL+G+ E ++ VA DGH LA Sbjct: 127 SLASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNLA 186 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 V P I+P K + + R+ +V+I I+ D TSKL+D Sbjct: 187 VVRFPCEAGTTFPGAIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKLID 246 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNP 297 +PDY +PK+ + L A R ++ ++K ++L S L+++ Sbjct: 247 AVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMAAT 306 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + EEA E + Y+G ++ IGFN Y+ D L+++K +V + L S + Sbjct: 307 DGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTDVAINLLTESSPGLLTPTVGTDE 366 Query: 358 AYVVMP 363 YVV P Sbjct: 367 LYVVYP 372 >UniRef50_Q1J2H7 DNA polymerase III, beta subunit n=4 Tax=Deinococci RepID=Q1J2H7_DEIGD Length = 360 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 181/369 (49%), Gaps = 12/369 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V ++ L + L + + R + P+L L ++ ++ L+L+GT+LE+++ V Sbjct: 1 MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + P + +PA F I R L G + ++L G + VR+G S F L T +P L Sbjct: 60 EVQAPQSFVIPAHLFAQIVRNL-GGELVELELTGGELSVRAGGSDFKLQTGDLEAYPPL- 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + +L A + R + + +++ +++ + G+ E R VA+DG+R+A+ Sbjct: 118 SFPTHTDVSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARVVASDGYRVAIR 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 P S ++IVP + EL+R+L G+ R G + KL+DG Sbjct: 178 DFP--ASGDGRNLIVPARSADELIRVLKDGEA--RFTYGEGLLSVTTDRVRMNLKLLDGE 233 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPEQ 299 FPDY RV+PK+ + LK+A R A+L+++ V VSE +L++ A + Sbjct: 234 FPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEGKLRLAAEG-DY 292 Query: 300 EEAEEILDVTYSGAE--MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 A++ LDV GAE M + FN +VLD L ++ + ++ + S S + Sbjct: 293 GRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGD-AELLFSGSTSPAIFRASGGGDY 351 Query: 358 AYVVMPMRL 366 V++ +R+ Sbjct: 352 MAVMVTLRV 360 >UniRef50_Q058G0 DNA polymerase III, b subunit n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q058G0_BUCCC Length = 368 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 204/368 (55%), Gaps = 2/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F +++ ++++ + P PIL N+++++ + L LT ++LE+E+ A + Sbjct: 1 MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60 Query: 61 --QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ G + +K +ICR + + A + ++ ++M + S F L+T+ +FP Sbjct: 61 FFILYKSGCVAISGKKILNICRNISKDAILHFKIINKKMRICILNSLFELNTMICTNFPI 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 +D+ + EF + + +K +I FS+A+ D+R LNG+L E + L V TDG+RL+ Sbjct: 121 FNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNNLYGVTTDGYRLS 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 V + I ++ + S+I+ +K ++EL R+++ + ++V I +N + + + + +K++D Sbjct: 181 VYKIAINLNIKNFSIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILLKTKILD 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FP+Y V+ K + LK++ ++ +IL N F+GV L +N+L IT+ N E Sbjct: 241 GNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLIITSKNQE 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E++ + + ++ NV Y+LD+LN L E + + +SS+QI+ + Sbjct: 301 DEKSYDSFIIDNKKIKISFHINVFYLLDILNVLDVEVITISFRIPISSIQIQSDKKKEIL 360 Query: 359 YVVMPMRL 366 Y++MP++L Sbjct: 361 YIIMPLKL 368 >UniRef50_A8ZRY7 DNA polymerase III, beta subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZRY7_DESOH Length = 377 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 162/379 (42%), Gaps = 15/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +VE++ +++ L V G G R +L I N+L++ +S++ TD+E Sbjct: 1 MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR----SGRSRFSLSTLPAADF 116 G + AR+F++I + + + + + + + R ++ + F Sbjct: 60 TIENEGTIAINARQFYEIVKKIDSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119 Query: 117 PNLDDWQSEVEFTLPQATMKRLIE-ATQFSMAHQDVRYYLNGMLFETEGE----ELRTVA 171 P L + A K +I AT + + + R ++ G E + ++R V+ Sbjct: 120 PQLPVIADVSYIDVNSADFKNMILWATVITSSGTEKRAHVIGANLEYIKDGKIKKIRMVS 179 Query: 172 TDGHRLAVCSMPI---GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG 228 TDG RL P S I+P+K + EL + L + +++ N Sbjct: 180 TDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKD-EGTIQIGTRDNYFIVKNN 238 Query: 229 DFIFTSKLVDGRFPDYRRVLPKN-PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 + I L+ G +P+ + ++ LK R +IL+ + ++GV + Sbjct: 239 NEIIYINLLSGEYPNLETLFSDEKGRTEIKINRKKLKDMLERMSILTTDNYKGVIFTFEK 298 Query: 288 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 N L I A NP++ E+ E +D+ Y +++ FN Y +D +N ++ + V + L + + Sbjct: 299 NILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFIDAVNLIEDDEVCLKLKEDQAPC 358 Query: 348 QIEDAASQSAAYVVMPMRL 366 + ++MPM++ Sbjct: 359 IVCGGKHPENINIIMPMKI 377 >UniRef50_P21174 DNA polymerase III subunit beta (Fragment) n=17 Tax=Actinomycetales RepID=DPO3B_MICLU Length = 310 Score = 266 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 7/314 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTVER+ L + + L RP +P+L LL+ G +S+ D E + Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G V R DI R LP A++ V+L+G ++LV SRFSL+T+P D+P L Sbjct: 60 DVETAGQVLVSGRLLNDIVRSLP-QAQVTVELDGGKVLVTCRSSRFSLATMPVGDYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + T+ A + + + D L + E EG+ + +ATD +RLA+ Sbjct: 119 ELPA-PAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITFLATDRYRLAMK 177 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + PS S+++ + + E+ + L GGD + + ++ + G TS LV Sbjct: 178 EIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTSVLV 237 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG +P R + P++ L +A R A+++ E+ +R+ +E Q+ + A Sbjct: 238 DGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLDAGTG 296 Query: 298 EQEEAEEILDVTYS 311 + A E + T Sbjct: 297 DDASANESVPCTLE 310 >UniRef50_B3QWU6 DNA polymerase III, beta subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QWU6_CHLT3 Length = 377 Score = 266 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 172/378 (45%), Gaps = 15/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+ +HL + + L + T ++ L++ LSL TD ++ + + V Sbjct: 1 MKFSSSIKHLSEAVNNTVLALPAKATDARYESINLKLEQNKLSLFATDGDISLTLQ-TNV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERM-----LVRSGRSRFSLSTLPAAD 115 + + GA ++ A+KF D+ R + + E E L+++ R + +S + Sbjct: 60 ESSDSGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFE 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 + Q ++ F + + + LI+ T F+ + +R + G+LFE E E +R V+TDGH Sbjct: 120 EESAGSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIRAVSTDGH 179 Query: 176 RLAVCSMPIGQSLPSH-SVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFT 233 RL + +IVP + + + ++ + GD + + S IR +G+ I Sbjct: 180 RLVKITRNHNTGAEGKLKIIVPSRVLGIVRKLFSEDGDVEISIDANSQRIRFRMGETILL 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 LV +P+Y V+P DK + L + R S+ VR +V EN L ++ Sbjct: 240 CSLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSSRGD--VRFHVQENSLAVS 297 Query: 294 ANNPEQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI--- 349 A N ++ A+E + Y + IGFN ++ D L L E V + + I Sbjct: 298 AENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNAEEVIFQFSSPTRAAIILPK 357 Query: 350 -EDAASQSAAYVVMPMRL 366 E+ A++ +VMP+R+ Sbjct: 358 QEEDANEDVLMLVMPVRI 375 >UniRef50_A9BHL7 DNA polymerase III, beta subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHL7_PETMO Length = 370 Score = 266 bits (682), Expect = 7e-70, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F ++ L +Q S + + PIL + L V D L + TDL+ + + Sbjct: 1 MSFEIDTRVLKNAVQLTSNAVSRKTANPILKGIKLAVEDDELHIYATDLQTGFHKWLKVK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E +T V F +I L I + L+G + + G S F L T+ +FP+L Sbjct: 61 DSDENFSTVVEQTIFLEILSNLTSD-TITITLDG-VLKISGGNSVFRLPTMDPDEFPSLA 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRY--YLNGMLFETE-GEELRTVATDGHRL 177 + L + + +I+ F LN + ++ G L VATD +RL Sbjct: 119 FEVTGNSILLDRTIITNMIDKVVFCALKDSSSLSRNLNAVYWDFRQGGFLNLVATDSYRL 178 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHV--GDFIFTS 234 A+ + ++ K + EL +L +RV + I + Sbjct: 179 ALSESKLEDDNILSPFLLSLKSMDELKTILSSAKTEKVRVVQSGSQILFDFEEDNNQLIY 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 ++D FP+Y ++P++ ++A R +I + + + L + + +++ A Sbjct: 239 NVIDAEFPNYLSIIPESFITKIKAKTSEFLAIMKRMSITAGSEEYTL-LNIEDGRIQFYA 297 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 ++P+ EA+E +DV G +EI ++ Y + L ++ ++D ++ Sbjct: 298 SSPDVGEAKEEIDVEQEGKNIEIAYSPRYFREALERIETVEFEFDISDEEKPTILKPLED 357 Query: 355 QSAAYVVMPMR 365 S +++MP R Sbjct: 358 NSYMFIIMPKR 368 >UniRef50_C9RC59 DNA polymerase III, beta subunit n=2 Tax=Ammonifex degensii KC4 RepID=C9RC59_AMMDK Length = 386 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 167/382 (43%), Gaps = 22/382 (5%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLL-----QVADGTLSLTGTDLEMEMVAR 56 + V++E L K L + +P +P LG +L+ + +++T TDL+ ++VA Sbjct: 9 RVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVAS 68 Query: 57 VALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 + G +PA++ FD+ R LPE Q E++LV L+ + +F Sbjct: 69 LQ-AHLEGEGELWLPAKETFDLVRRLPECTLELGQAGPEQVLVSYPGGEARLTGMNPEEF 127 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG-EELRTVATDGH 175 P +++ + LP + + ++ A + G+ L ATDGH Sbjct: 128 PAVNEQEDGYT-ALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSGGLTFAATDGH 186 Query: 176 RLAVC----SMPIGQSLPSHSVIVPRKGVIE---LMRMLDGGDNPLRVQIGSNNIRAHV- 227 RLAV G S +VP + E L ++L G P RV +G + Sbjct: 187 RLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLL--GKEPDRVLLGRHTASFVWP 244 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKN-PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 G+ FT +L+D +FPD+R+ LP+ P L + L RA ++ V L V Sbjct: 245 GEAEFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVVLLVK 304 Query: 287 ENQ-LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSV 344 E + +++ A + E E +E +D G ++ + FN Y+L+ L L VR+ L Sbjct: 305 EGEEVRLEARS-EAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVLDSAAEVRVGLYGPA 363 Query: 345 SSVQIEDAASQSAAYVVMPMRL 366 S + + +V+P+RL Sbjct: 364 SPATVTVPGDERYLALVLPVRL 385 >UniRef50_A5CBW4 Chromosomal replication initiation protein n=6 Tax=Orientia tsutsugamushi RepID=A5CBW4_ORITB Length = 432 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 93/403 (23%), Positives = 185/403 (45%), Gaps = 39/403 (9%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLL----QVADGTLSLTGTDLEMEMVARVA 58 ++ ++ + L L + IL N+ L + L ++ TD ++ + ++ Sbjct: 20 IKLDTKNFSRVLNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79 Query: 59 LVQPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRS-RFSLSTLPAADF 116 + + T+P + +I + +P + I + + + ++ G F+L+TLP F Sbjct: 80 IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKMVQIKGGEYLEFNLATLPINLF 139 Query: 117 PNLDDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG-EELRTVATDG 174 P +++ + + + ++IE T+F+++ ++ RY LNG+ ++ + L VATDG Sbjct: 140 PVIEELTDVDFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLHSKDYKSLIAVATDG 199 Query: 175 HRLAVCSMPIG------QSLPSHSVIVPRKGVIELMRMLDG---GDNPLRVQIGSNNIRA 225 HRLA I + VI+PRK + EL ++ + +++ SN I+ Sbjct: 200 HRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSNKIQF 259 Query: 226 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 + SKL+DG FP+Y +P N K + + L ++ R + ++ EK + V L + Sbjct: 260 DCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIDRVSTIAVEKSKIVILDL 319 Query: 286 SENQLKITANNPEQEEAEEIL--------------------DVTYSGAE-MEIGFNVSYV 324 + + I A+ Q +A+E+L Y G + + I FN Y+ Sbjct: 320 DHHAITIRAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFNAKYL 379 Query: 325 LDVLNALKCENVRMMLTDSVSSVQIE-DAASQSAAYVVMPMRL 366 LDVL+ + + DS+S I+ + + SA +++MP+ + Sbjct: 380 LDVLSVCNNIKIPIEFKDSISPALIQFEEKNTSATFIIMPVSV 422 >UniRef50_B7KMQ3 DNA polymerase III, beta subunit n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMQ3_CYAP7 Length = 479 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 71/380 (18%), Positives = 163/380 (42%), Gaps = 20/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ T+ + L L++V + RPT PILGN +LQ +G L+++ +L + + + Sbjct: 1 MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-----MLVRSGRSRFSLSTLPAAD 115 + G TVPA+ + LP + E + + ++ S++ + L + Sbjct: 60 EVSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDE 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P++ ++ T L+ + + + + L G+ + +L TDGH Sbjct: 120 YPDIPSLDESETISIKMKTFIELLNPVLPTYSEDETKQVLVGVHLVGKNNKLELATTDGH 179 Query: 176 RLAVCSMPIGQSLPS------HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN--IRAHV 227 RL+V + + + + K + L + + D ++I N ++ ++ Sbjct: 180 RLSVTGALLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWNKELVKFNL 239 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 + T++L+ G +P+Y ++P L + +A R +L+ +K + + ++ Sbjct: 240 TSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDK-NIIVIEANK 298 Query: 288 N--QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 N L +T + E + E + ++ +++G N Y+++ + AL +++ M + S Sbjct: 299 NLQTLTVTTFDTEVGQGSETIHAEFA-LNLKMGVNGKYLIEAIKALDAKSLTMNINTPTS 357 Query: 346 SVQIEDAASQ--SAAYVVMP 363 + + ++MP Sbjct: 358 PAVLVPSECTLARCLVLIMP 377 >UniRef50_Q3B6Y8 DNA polymerase III, beta subunit n=10 Tax=Chlorobiaceae RepID=Q3B6Y8_PELLD Length = 378 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 165/376 (43%), Gaps = 14/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T L + +V+ + + N+ L + G L+L +D E+ + A+ + V Sbjct: 5 MKLTSSIRQLQDAVSKVAQAIPAKSIDQRFENINLSLEPGELTLFASDGEVSITAK-SGV 63 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA-----VQLEGERMLVRSGRSRFSLSTLPAAD 115 + + G + AR D R + + + + + + + + + R+ + L + Sbjct: 64 ESSDSGNIGIRARTLQDFLRSMYDTSVMFSIERQEISDHGTVSISTDKGRYRIPCLFQSK 123 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 P D Q ++ + + M LI+ T F+ + +R + G+LFE EG + VATDGH Sbjct: 124 -PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPAMMGVLFELEGSIITAVATDGH 182 Query: 176 RLAVCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RL C L + V+VP + + L ++ ++ +R G + + Sbjct: 183 RLVRCRKASSVDLSEKNKVVVPARVLSILQKLAQTDSVTMQFDSERKFVRFICGSIVLDA 242 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L+ +P+Y V+P D++L ++ + R S+ V++ + +KI A Sbjct: 243 ALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRVGRFSS--IGDVKVVLEGQMMKIMA 300 Query: 295 NNPEQEE-AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED-- 351 N + E A+E L +SG +M IGFN ++ L L +R+ L ++V Sbjct: 301 ENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALAHLDENEIRIELKSPTTAVIFRPHG 360 Query: 352 -AASQSAAYVVMPMRL 366 + + +VMP+R+ Sbjct: 361 EEENDNLIILVMPVRI 376 >UniRef50_A8Z6B4 DNA polymerase III, beta subunit n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z6B4_SULMW Length = 366 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 166/368 (45%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF LLK L+ + + LPIL L++ L++T +DLE+ M ++ + Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +P + DI + +PE ++ ++ + +++S + ++P Sbjct: 61 NSIN-YGSAAIPYKILIDILKNIPEQPLTFIKEIDNKLKIIYQNGEYNISIYSSEEYPKY 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + + +I T F++ + D+R +NG+LFE + V+T+ L Sbjct: 120 SILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNTTILVK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + S I+ +K + L L+ D + + N L++G Sbjct: 180 YTRKDILSNNKIKFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIICSLING 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+Y ++ +K L + + R S + L +S+NQ KI++ + Sbjct: 240 IYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSK-IITQIILNLSKNQSKISSWDY-N 297 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--AASQSA 357 +A E L +Y G ++IGFN +++D+L+ + C++++ + D+ SS + + + Sbjct: 298 NKAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDIKFEILDNKSSCKFTPNLSNIEEI 357 Query: 358 AYVVMPMR 365 ++MP++ Sbjct: 358 LILIMPIK 365 >UniRef50_C7H084 DNA polymerase III, beta subunit n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H084_9FIRM Length = 363 Score = 261 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 80/366 (21%), Positives = 178/366 (48%), Gaps = 5/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT ++ + + L V + R T+PIL +L++ + + + GTDLE+ +++++ + Sbjct: 1 MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLKIK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V A+ F++I R LPEG E +++ +++ S F L L FP Sbjct: 61 N-DEVGKIIVNAKLFYEIIRKLPEGNIEFFTDESKKLHIKNLNSEFELEYLEEEKFPFAK 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + E +F+ + + +I+ + ++ + + L G+ E + V +DG+R+A+ Sbjct: 120 EVKGE-KFSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISLVGSDGYRIAIT 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 I ++VP + ++ + ++L + + IG +I+ + + KL++G Sbjct: 179 KENIINEQE-KDILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLKLLEGT 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPEQ 299 + DY++ + + + L A R +LS E K + L + N LKI ++ + Sbjct: 238 YIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIETSS-DI 296 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 A+E + + G + E N ++LD + + E +++ + + + IE+ + + + Sbjct: 297 GYAKEEIILDKMGEDNEFAINCKFLLDAIKNIDGEELKLKIGKNERFILIEEVENDRSQF 356 Query: 360 VVMPMR 365 ++M ++ Sbjct: 357 LIMNLK 362 >UniRef50_D2PYX2 DNA polymerase III, beta subunit n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX2_9ACTO Length = 382 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 75/377 (19%), Positives = 157/377 (41%), Gaps = 19/377 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ E++ L + + V+ L RP P+L +LL ++ GTD + A +A Sbjct: 1 MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGTTIAGTDQAIANRAGLA-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG P R +I + LP G+ + ++ +++ SG + ++L +P +F L Sbjct: 60 SVDEPGTCLAPGRMLAEIVKLLPPGS-LRLETVDNALVLTSGTATYALPLMPVEEFAPLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E + + S DV L+G+ +++ V+TD +RL + Sbjct: 119 ALPDEHSAEVEPEEFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVELVSTDRYRLGIA 178 Query: 181 SMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRV--------QIGSNNIRAHVGDFI 231 +P+ + V+VP K + +L+R PLR+ G+ + + + + Sbjct: 179 RVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDATFGLRNAV 238 Query: 232 FTS--KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 ++ +++ G + YRR++P L L++ R A+++ + ++ + Sbjct: 239 RSTCLRVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVA-AGMTPIWFDLTGDD 297 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L++ A +P E L +G + I F + + D +++ + + + V I Sbjct: 298 LRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTSQLCVAFAGARKPVLI 357 Query: 350 EDAASQ-----SAAYVV 361 A + +V+ Sbjct: 358 TGATADGAPAGDYRHVL 374 >UniRef50_D1WRR1 DNA polymerase III, beta subunit n=5 Tax=Streptomyces RepID=D1WRR1_9ACTO Length = 375 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 18/377 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG------TLSLTGTDLEMEMV 54 M+F +ER L + + L R +P+LG LLL G +L ++G D E Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 V + PG V R+ DIC+ LPEG + +EG R V +RF LS LP Sbjct: 61 VDVD-AEVVRPGKVLVMGRRLLDICKVLPEGP-VECAVEGSRFTVSGDGARFGLSVLPLD 118 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D+P+L ++ + + + D L G+ +G+ + ATD Sbjct: 119 DYPSLPPLP-QLRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAATDR 177 Query: 175 HRLAVCSMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 +R AV ++P + P V+V + + E+ R L + V + + + Sbjct: 178 YRYAVRTLPWKATTPGETADVLVSARRLTEIARSLGRS-GLVSVALDAGSAGFEHAGTRT 236 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQL 290 T +L++GR P + ++ L +A R ++++ + V++ S ++ + Sbjct: 237 TVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVA-DGDSPVQMAFSRADSSV 295 Query: 291 KITANNPEQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + A E + A + L + G E+ + FN Y+ D L + ++R++L + I Sbjct: 296 TLRA-GYEDDVASQRLPASLEGAEELTVAFNPGYLADALASCTEPSLRLLLLGAGQRAMI 354 Query: 350 EDAASQSA-AYVVMPMR 365 D A +++M ++ Sbjct: 355 TDEAGTDVHRHLLMSVK 371 >UniRef50_B3ZXM6 DNA polymerase III, beta subunit n=1 Tax=Bacillus cereus 03BB108 RepID=B3ZXM6_BACCE Length = 377 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 171/380 (45%), Gaps = 18/380 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F++ + L+ L +VS +PILG + ++ + T+ L G++ E + ++ Sbjct: 1 MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60 Query: 60 --VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + + GA +P + DI R LP G + + V + S+FSL+TLP+ ++P Sbjct: 61 DNLSVEKEGAIVIP-KTISDIVRKLPNGEICFKLQKKGLLDVSTKNSKFSLNTLPSEEYP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 N + + + + A + + +E T + A D R L G+ + +++ AT+GH L Sbjct: 120 NFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGIEIKITNKKIAFSATNGHLL 179 Query: 178 AVCSMPIGQSLPSHS-----VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 + C + + IVP K + + ++ + + L + N + Sbjct: 180 SQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFNN--DTLTLGFEENAVTLFSSTQYI 237 Query: 233 TSKLVDGRFPDYRRV--LPKNPDKHLEAGCDLLKQAFARAAILSN--EKFRGVRLYVSEN 288 ++L++G FPD++ P++ L + + I+ + E + + Sbjct: 238 KTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASIMYENS 297 Query: 289 QLKITANNPEQEEAEEILDVTYSG--AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 +L ++ NN Q E T +G ++++GFNV+Y+L+ L +L E V + + Sbjct: 298 ELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSGEEVTLGYIGDIKP 357 Query: 347 VQIEDAASQSAAYVVMPMRL 366 + + + +++P+RL Sbjct: 358 IILNGNREEEFK-LMLPVRL 376 >UniRef50_Q2JF20 DNA polymerase III beta subunit family protein n=5 Tax=cellular organisms RepID=Q2JF20_FRASC Length = 433 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 92/434 (21%), Positives = 165/434 (38%), Gaps = 74/434 (17%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRP--TLPILGNLLLQVADGT----------------- 41 M+F+VER+ + L RP +L +LL G+ Sbjct: 1 MRFSVERDAFADATGWAARHLPNRPGPARNVLTGILLAAGHGSPASPGSAAVPLPSGSAA 60 Query: 42 ------------------------------LSLTGTDLEMEMVARVALVQPHEPGATTVP 71 L++ D E+ + A VA EPG VP Sbjct: 61 SPGSAAVPLPSGSAASPGSAAPLGAATASVLTICAYDTEVAVRAPVA-ASVDEPGRVLVP 119 Query: 72 ARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLP 131 R DI R LP + V ++G+R+++R G RF++ + ++P L + + + Sbjct: 120 GRLLTDIVRSLP-ATTVDVVVDGDRLVLRCGSVRFTVPLMDPGEYPQLPSFPGPI-GEVD 177 Query: 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSH 191 + + + L + E G L VATD +RLAV +P ++ Sbjct: 178 TLGFASAVGQVAPAAGRDETMPVLTAVRMEISGRGLALVATDRYRLAVRGIPWQPTVDDP 237 Query: 192 SVI--VPRKGVIELMRMLDGGDNPLRVQIGSNN-----IRAHVGDFIFTSKLVDGRFPDY 244 + VP K + E+ R + + + + ++ + G +L++G FP+Y Sbjct: 238 WALAHVPAKVLAEVART-PTSASRIVIGLDLDDPSGARLGLAAGGRQTIVRLIEGTFPNY 296 Query: 245 RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEE 304 R++LP+ + A L A + + +R + NQ+ A + +A E Sbjct: 297 RKLLPEAAALVVTAQTAALAAAVR-RVAVVATRTGPLRFTFTHNQVVAEAGDGGGAQASE 355 Query: 305 ILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD------SVSSVQIEDAASQS-- 356 + V Y+G E+ + FN SY+LD L A++ + + D + + S Sbjct: 356 TIPVEYAGPELSVLFNPSYLLDGLGAVEDDQATIGFVDDDPVEAAAKPAVLTGKDSGRGA 415 Query: 357 -----AAYVVMPMR 365 Y++MP+R Sbjct: 416 VDEGAYRYLLMPIR 429 >UniRef50_C0GS25 DNA polymerase III, beta subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GS25_9DELT Length = 386 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 73/377 (19%), Positives = 160/377 (42%), Gaps = 14/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E ++ + + S + + L + + ++ + TD +E Sbjct: 1 MKIIIYKEDFVEGISKASNLIPTKTGAAYLRTIWFKTDMDSVRIMSTDSNVEFTGEYR-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-GERMLVRSGRSRFSLSTLPAADFPNL 119 + E G P RK D+ R L G E + + V+ + F L ++ FP L Sbjct: 60 EIVEEGLIGTPGRKISDLIRKLKSGPITMYSDEKNDILYVQQEKRHFKLPLSESSWFPEL 119 Query: 120 DDWQSEVEFT-LPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRL 177 D++ E +P K ++E + F ++ D + + + ++ A +GH+L Sbjct: 120 DEFPEENALAGIPGIKFKDILEKSLFCISDDDTMQGMTCLKIAPGDENQVEFCAFNGHQL 179 Query: 178 AVC---SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV--GDFIF 232 ++ S + + LP +++ +K +++L + + D +++ I + I F Sbjct: 180 SLYIHESSGLREILPEKGIMIAKKYLMDLRKWVPESD--IQITITDSKIFFRTLDKKECF 237 Query: 233 TSKLVDGRFPDYRRVLPKNPDK---HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 + L +FP+YR + +K L + L + R I + + + + + + Sbjct: 238 SLPLNMHQFPNYRDFINNYSEKLGGPLVTTKNDLMDSLERILIFNTDSQMSTLMRLGQEE 297 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + +T+ + EAEE++ +Y G E+ FN +L++L + +NV M + + +I Sbjct: 298 IYMTSTAVDSGEAEEVVGCSYQGNLKEVVFNTKSLLEILGHIDDDNVVMKFSGPIEPCRI 357 Query: 350 EDAASQSAAYVVMPMRL 366 Q + MP+++ Sbjct: 358 NGENDQKYYVMTMPVQI 374 >UniRef50_A6Q665 DNA polymerase III, beta subunit n=4 Tax=Epsilonproteobacteria RepID=A6Q665_SULNB Length = 355 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 67/365 (18%), Positives = 159/365 (43%), Gaps = 13/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +++ + L + L + I ++L + + TD E+ + + Sbjct: 1 MKIRAQKQIIESILINLQPFLEKKDASQITSHILFSSQNDKCIVKATDSEIGLQIVTDHI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ T +K DI R L + I L+ ++V+ S+F L T +P Sbjct: 61 LIESEGSFTANGKKLLDIIRILKDDEIIMEILDN-TLIVKQKHSKFKLPTFDPNAYPAFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + TL ++ + ++ ++ + ++ LNG L + + V TD RLA+ Sbjct: 120 SVDEKPQITLDSLSLIQNLKKISPAIDTNNPKFELNGALINIKHDSTDLVGTDTRRLAIA 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S+P G + S+IVP+K ++E+ ++ + + N+ ++ F ++L++G+ Sbjct: 180 SIP-GNNSEELSLIVPKKAILEIQKLFLD---QINIYYDETNLIITNENYFFYTRLINGK 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY+R++P + + + + +S E +++ + + + + + + Sbjct: 236 FPDYQRIIPASVKHSITLPKKEMIDSIKMITTISQE----IKMTLLSDAIIFNSLSADNV 291 Query: 301 EAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ +++ + E+ FN Y+LD ++ + + + ++ ++ Sbjct: 292 EAKTEIEIGTGLNEKYELSFNSRYILDFISQIDKNEFLLEFNEPSLPFIVK---DENFIT 348 Query: 360 VVMPM 364 ++MP+ Sbjct: 349 IIMPI 353 >UniRef50_A4V7F9 Putative DNA polymerase subunit n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7F9_PSEFS Length = 369 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 180/373 (48%), Gaps = 11/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+++ L L+ V+ + R + G+ L+ V L L+ + + +M + Sbjct: 1 MKFSIKCSDLAHYLKTVAR-VPQRKATDVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59 Query: 61 --QPHEPG-ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 G A VPA KF + L + A +++Q ++++ + RSRF+L+T+PA FP Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEPKLVISAARSRFTLATIPADHFP 119 Query: 118 NLDDW--QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 ++ QS+ E + +T+ + F A DVR LNG+LF+ + + A DG Sbjct: 120 VMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTLAAADGL 179 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL V +P+ P + I+P + ++ + + G +RV + R + +K Sbjct: 180 RLGVTEVPVTGE-PMQNFILPSSCIEDVCQFV--GTGSVRVSTSGSMARFTREGGVLHTK 236 Query: 236 LVDGRFPDYRRVLPKNPDKHL-EAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 LV+G+FPDYR++L + D A AR +LS VRL VS + I + Sbjct: 237 LVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSAESISIQS 296 Query: 295 NNPEQEE-AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + E+ A+++L Y+ +EIGFN +++ +L + ++ + + S + Sbjct: 297 VGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEIDVIFSGAASGTLLRARD 356 Query: 354 SQSAAYVVMPMRL 366 S ++V+MP+RL Sbjct: 357 LPSHSFVLMPVRL 369 >UniRef50_UPI0001BC56D7 DNA polymerase III, beta chain n=2 Tax=Fusobacterium RepID=UPI0001BC56D7 Length = 373 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 157/375 (41%), Gaps = 13/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V R LK L+ V + PIL + ++ L L GT+LE + V+ Sbjct: 1 MQVIVNRNEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP--- 117 + + G + + L E EI ++++GE ++V G + ST P D+P Sbjct: 61 EVVKEGKVAFQYPLIDEYMKELKE-EEIQIRMDGEALMVEGGDAVSEFSTFPYEDYPKAF 119 Query: 118 -NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 N + + EV + + + + +FS D ++ + E E+ V TD +R Sbjct: 120 ENFEKQEEEVLLRMNSIELATIFDKLKFSAGSTD-NPAIHCVRVEGRDGEIHFVTTDTYR 178 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L + +P + V ++ G + ++V + D S L Sbjct: 179 LTYLHKSFSL-QEDFQMSLPLETVEACSKIFRGLEAEVKVYFDKKFAHFLIEDIHIVSSL 237 Query: 237 VDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLKI 292 ++ FP Y+ +L N DK + + L R I + E G ++++ LKI Sbjct: 238 IELTFPAYQTILSNGNYDKIMGISTESLISILRRVIIFVRNNEESKYGATFHLADGVLKI 297 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE-NVRMMLTDSVSSVQIED 351 N + + E + V Y GA +++ N Y+ D + L+ + + + + S +SV++ + Sbjct: 298 K-GNSDIAKINEEMAVDYQGAPLKVSLNTKYLFDFVQNLEKDTELSLEMLSSKTSVKVHE 356 Query: 352 AASQSAAYVVMPMRL 366 + Y++MP+ L Sbjct: 357 KGKEDYIYILMPLAL 371 >UniRef50_Q2B8R4 DNA polymerase III subunit beta n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8R4_9BACI Length = 368 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 171/373 (45%), Gaps = 15/373 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 MKF +E++ L ++++ L + ++PIL +L+Q L T +D ++ RV L Sbjct: 1 MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60 Query: 60 ---VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLS--TLPAA 114 V G+ V + FD+ + L I+ +L ++++V +++ L + A Sbjct: 61 EGAVNIESEGS-AVFTKDCFDVTKKLK--GSISFELIDQKVIVSQDKTKTRLEFGVMDAE 117 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D+P + + ++ T F+ + ++R L G+ + VATD Sbjct: 118 DYPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNFVATDS 177 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HRL + GQS + SV V K + ++++ D + V NI G I+ + Sbjct: 178 HRL--GKVTTGQSEETMSVTVHAKKLEQVLKSFDFS-TEVLVFPTELNIAFANGHTIYYT 234 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+DG FPD R++PK + L + + + +S E V L ++ +++ A Sbjct: 235 RLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAISREG--IVMLSINGLFVELAA 292 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + + EI ++ G +E+GF+ YVLD L ++ ++ + +S I+ + Sbjct: 293 LGDTAKGSREIAYESFEGESLEVGFSAKYVLDALKSIDSSSISIGFNGGMSPFVIQPLSE 352 Query: 355 Q-SAAYVVMPMRL 366 + + +++P+RL Sbjct: 353 EITELQLILPVRL 365 >UniRef50_B9L736 DNA polymerase III, beta subunit n=2 Tax=Nautiliaceae RepID=B9L736_NAUPA Length = 350 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 167/366 (45%), Gaps = 16/366 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M +E+ + L Q+ + I ++L++ + L L TD E+ + + Sbjct: 1 MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIKA-NEKLILKATDKEIGIKV-ITNA 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + EPG T+ ++F DI + L + EI ++ E ++ + S + L++ A++FP Sbjct: 59 EIIEPGTVTINGKRFLDIIKTL-QNKEIEIKTEENQITITQDSSIYKLTSFNASEFPEFP 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + + + I+ + + + +Y LNG LF+ GE+ V+TD RLAV Sbjct: 118 NTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDL-GEKTNFVSTDTRRLAVY 176 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 +IVP++ + E+ R++ +++ + + +F +KL++G+ Sbjct: 177 YSKAKAR--DSKIIVPKRSIAEIKRVIRDD---MQIFYDDVYLILKNNEILFFTKLINGK 231 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP Y +++P++ L + +I+SNE V++ + +++ + + E Sbjct: 232 FPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISNE----VKITIKNDKIIFESISDETM 287 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 +A+ D+ + N Y++D LN ++ + + L + ++ ++ + Sbjct: 288 QAKTSFDLNTPLEDFTFAVNSRYIMDFLNVIENDTFVLGLNEPNIPFVLK---DENFITI 344 Query: 361 VMPMRL 366 VMP+ + Sbjct: 345 VMPLNI 350 >UniRef50_C3WBN0 DNA polymerase III beta subunit n=3 Tax=Fusobacterium RepID=C3WBN0_FUSMR Length = 376 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 165/376 (43%), Gaps = 12/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +ER LK L+ V + PI+ ++ L GT+LE + + Sbjct: 1 MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLFFCGTNLETTITTEMKCK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL- 119 + E G + + + L + + +++G +++ S S S + DFP + Sbjct: 61 EVIESGKIVFQHQLVEEYLKELKDEFVVFSEIDGN-LVIESSDSSSEFSLMNVEDFPKIL 119 Query: 120 ---DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 D Q E F + + ++E +++ + +N + E E ++L+ + TD +R Sbjct: 120 VDEDFSQKEEIFKINSIELAEILEKVKYAASSSSDNLSINCVRMENENKKLKFITTDTYR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSK 235 L I + + V +P V L ++L + + I + + + S+ Sbjct: 180 LVYLEKEIEKINENIDVSIPLNTVEALTKLLRSIESTDISFYFINRQIFFKMEEVLVISR 239 Query: 236 LVDGRFPDYRRVL-PKNPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLK 291 ++D FP+Y+ +L + +K L ++ + R I +NE G Y+ + +++ Sbjct: 240 IIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGATFYLEKKEMQ 299 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQIE 350 + N E + E+L+V Y G ++I N ++ D + L K +++ + S SSV+I+ Sbjct: 300 VHGVN-EVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNKDITLEFIASNSSVKIK 358 Query: 351 DAASQSAAYVVMPMRL 366 + + YV+MP+ L Sbjct: 359 EEEANDYLYVLMPLAL 374 >UniRef50_C5EYP3 DNA polymerase III n=3 Tax=Helicobacter RepID=C5EYP3_9HELI Length = 355 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 160/365 (43%), Gaps = 13/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T++ L + L + + I ++ L+ D L TD EM + + + Sbjct: 1 MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 +E G TV ++ DI + L EG E+ + E + ++ +S F L A +FP Sbjct: 61 TINEQGIATVNGKQILDIIKRLKEG-EVNLYTNNENLHIKQNKSSFKLPMFNAQEFPTFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++++ + + + ++ + + + LNG L + + VATD RLA+ Sbjct: 120 EYETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKEYSYNFVATDTKRLAMV 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S + ++I P+K + E+ R+ + + NI ++IF S L++G+ Sbjct: 180 KFD-NASGNNLALIFPKKAITEIQRLFFDN---IELFYNERNIIIKSQNYIFFSHLINGK 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY ++LPK L + + ++N+ V+L N++ + + + Sbjct: 236 FPDYEKILPKEIQTELVLQKSSIIEGIKVINSVTND----VKLTFRPNEILFESLSQDNS 291 Query: 301 EAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ +++ E+EIG N +VLD L+ + L + +++ + + Sbjct: 292 EAQTQIEINLPITEEIEIGINSRHVLDFLSQIDSVEFIWGLNGKNAPFVLKNG---NFST 348 Query: 360 VVMPM 364 VVMP+ Sbjct: 349 VVMPI 353 >UniRef50_C4XT11 DNA polymerase III beta subunit n=10 Tax=Desulfovibrionales RepID=C4XT11_DESMR Length = 397 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 151/389 (38%), Gaps = 27/389 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV R ++ LQ+ S + + L + L+ A +LS+ TD +E A Sbjct: 1 MQLTVFRNDIIDGLQKSSSIIPAKTGAAFLRTVWLEAAGSSLSILSTDSSLEFTGHYA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG--ERMLVRSGRSRFSLSTLPAADFPN 118 + + G V + FF++ R LP G EI++ L+ +L++ G R+ L F Sbjct: 60 KVAKEGLCGVQGKSFFELVRKLPPG-EISLTLDEASGNLLIKQGSRRYKLPVSDRNWFQP 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE--TEGEELRTVATDGHR 176 + +E T ++ +IE + ++ +D + M + + +GH+ Sbjct: 119 FAAFPNEGAVTWSGDFLQEIIERVAYCISDEDTMEAMACMYLRPVADSARIEVCGLNGHQ 178 Query: 177 LAVCSM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF--- 230 ++ I LP +++ +K V EL R L + + +G + Sbjct: 179 FSLVGFLNDDIHAMLPPDGILIQKKYVAELKRWLTA--EEVELAMGQKRLFFRTTKRDEA 236 Query: 231 ---------IFTSKLVDGRFPDYRRVLPK---NPDKHLEAGCDLLKQAFARAAILSNEKF 278 F+ L ++PDY + K + L A R AI + + Sbjct: 237 APEGQGSVETFSLPLSFYQYPDYNAFVSKLATDGVSTLAIDRLECIDALERVAIFNTDNN 296 Query: 279 RGVRLYVS-ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVR 337 R +L + + E EA E L+ ++G ++ F + D+L + V Sbjct: 297 RCASFLFDGPGELSLKSQGQEAGEATETLECVFTGDLDKVAFPTKDLTDILGHFESAKVS 356 Query: 338 MMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 + LT + I + ++MPM++ Sbjct: 357 LTLTGAEGPCGIRGEDDTDSLVIIMPMKI 385 >UniRef50_C9M5Q0 DNA polymerase III, beta subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Q0_9BACT Length = 361 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 80/355 (22%), Positives = 154/355 (43%), Gaps = 7/355 (1%) Query: 17 VSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFF 76 R L ++ ++ L TDL+ + VQ E GA +P R Sbjct: 2 AERTTNSRVPQTSLYSVHIRCGQDGTFLEATDLKTSISVAAEGVQVVEEGAALLPVRVIG 61 Query: 77 DICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTL-PQATM 135 ++ + + + + + + ER ++ +G++++ ++ P FP++ S+ F L P + Sbjct: 62 ELLKKI-DSEVVELSVTQERGMLVAGKNQYDVAVFPTDLFPDMPRPSSDEPFALVPSGEL 120 Query: 136 KRLIEATQFSMAHQDVRYYLNGML-FETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVI 194 R+++ + + + G + + ELR V+TDG RL++ + +S SV+ Sbjct: 121 IRVLDEGIVAGSVSEEFPRYIGACQLQCQKGELRAVSTDGRRLSLSKC-LCESGTDGSVL 179 Query: 195 VPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNP 252 VP + E R L D +RV + + ++ + ++ FP+Y +VL K+ Sbjct: 180 VPLAPMKEFQRFLQSVESDATVRVFTDQALVHFCLPGLEYSVRRIESSFPNYEKVLRKDF 239 Query: 253 DKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE-NQLKITANNPEQEEAEEILDVTYS 311 L L A R +L E V + +S ++ + +PE +A E L + Sbjct: 240 TSTLTVNRGLFIGALERVDLLVRENNHLVVVTLSPSGEMTLVGRSPEVGKACEHLSGMIT 299 Query: 312 GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 G ++ FN +Y+LD L A + V M S + + S + Y++MP+ L Sbjct: 300 GESLKAAFNANYMLDGLRAFHGDEVYMTFNGSNGQMNMMRPGSDTFLYMLMPVNL 354 >UniRef50_P34029 DNA polymerase III subunit beta n=2 Tax=Spiroplasma citri RepID=DPO3B_SPICI Length = 363 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 169/371 (45%), Gaps = 16/371 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--A 58 M ++R+ +L L +VS + + +P L +L++V ++ T +D + + + + Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + G+ + + ++ R + + +EG + +++ L+TL +AD+P+ Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVEGNLIKIKANNFDSVLNTLNSADYPH 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE--GEELRTVATDGHR 176 L E +K +I T F++ ++ R NG+ +T+ +EL ATD R Sbjct: 121 LSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATDSFR 180 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L+ + + + VI+P K + E+ R++ D + + I + K+ Sbjct: 181 LSCKKIDYSNNY-NFDVIIPGKFINEIGRLISENDQVSELLL----IIINCKQ-----KI 230 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITAN 295 ++G++PD +V+ + + L + + R ++LSNE V L + E ++ +T+ Sbjct: 231 IEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQKVLVTSF 290 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 E EE + D G + I FN Y+LD L A K + + + + D + I Sbjct: 291 TQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTKEITIKMIDERKPLIITANDD 350 Query: 355 QSAAYVVMPMR 365 Q+ +V+P+R Sbjct: 351 QTLQQLVLPIR 361 >UniRef50_A8EQT1 DNA polymerase III, beta subunit n=2 Tax=Campylobacterales RepID=A8EQT1_ARCB4 Length = 356 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 74/365 (20%), Positives = 162/365 (44%), Gaps = 14/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L + + L + + I ++ L++ + L + TD E+ + + + + Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TTV I + L I ++ ++++ +S F L T A +FP L+ Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRLKNEDII-LEATNNNLVIKQNKSTFKLPTYDANEFPVLN 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E ++ I ++ + + ++ LNG L + + +++ V+TD RLA+ Sbjct: 120 KSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQKINFVSTDTRRLALS 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + + +I+P+K +IE+ ++ ++ + N+ F +KL++G+ Sbjct: 180 FLE-NMNNDEAQLIIPKKAIIEIQKLFLD---EAKISYDNTNLVISNQHTKFFTKLINGK 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY R++P N + ++L ++ L F +++ S + + + + Sbjct: 236 FPDYERIIPSNLKHNFFLPKNVLVESIKLVTSL----FSNIKITFSSKSIIFESLDED-S 290 Query: 301 EAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ +D+ + E + N Y+LD L+ E V++ +S + Sbjct: 291 EAKTQIDIDLNIPNEFFLAVNAKYLLDFLSMTNNEKVKIGFNESNLPFYL---EDDKFIT 347 Query: 360 VVMPM 364 +VMP+ Sbjct: 348 IVMPI 352 >UniRef50_C8PKQ5 DNA polymerase III, beta subunit n=2 Tax=Campylobacter RepID=C8PKQ5_9PROT Length = 359 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 158/367 (43%), Gaps = 14/367 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ L + + S L + I +LL+ DG S+ TD E+ + + V Sbjct: 1 MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G T K + +GL + + + ++ + V+ +S++ L DFP+ Sbjct: 61 SIETEGEATANGGKLLSVIKGLSDDS-VTLETVNGALFVKQKKSKYKLPMFETRDFPSFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + + R ++ S+ + +Y LNG L + + L V TD RL+V Sbjct: 120 VVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNLVGTDTKRLSVY 179 Query: 181 SMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + +++P+K + E+ ++ +++ N + A +F F +KL++ Sbjct: 180 KLITQSKAGELDTKILIPKKAIGEIQKLFSDK---IKIYYDENVLLAVSENFEFFTKLIN 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FP+Y RV+P + + D + + E +++ + ++ + + N + Sbjct: 237 GKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMCEE----MKVTIKKDGMIFESINED 292 Query: 299 QEEAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EA+ ++ T E+ G ++LD L+ ++ E + S ++ + Sbjct: 293 NSEAKTEIEATIEINGEIVFGVKNRFLLDFLSNIESEIFELDFNSSDTAFVLSA---DGL 349 Query: 358 AYVVMPM 364 V+MP+ Sbjct: 350 KTVIMPI 356 >UniRef50_C7NAH5 DNA polymerase III, beta subunit n=4 Tax=Fusobacteriaceae RepID=C7NAH5_LEPBD Length = 375 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 72/373 (19%), Positives = 162/373 (43%), Gaps = 11/373 (2%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 V R+ LLK + V + +L + ++ D L GTDLE+ + + Q Sbjct: 3 HIIVNRKSLLKAITIVENAVSENKIREVLSGIYIETKDEKAILRGTDLELTINTEIE-AQ 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 E G + + + + + + ++ E +++++S + S A +FP Sbjct: 62 VEEDGKIVIKHKLIEEFLKQISDEKITLIE-ENGKLIIQSSSTNTEFSLYNAENFPTQSP 120 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + VE+ + + IE + S + +N + E E ++L+ +++D +RL Sbjct: 121 LNTGVEYIFSKQKLLNNIENVKISASTNPENLAVNCIRVEIEEDKLKLISSDTYRLTYIE 180 Query: 182 MPIGQSL---PSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + +S + S+ VP K + L++++ + + ++ + + + ++ + Sbjct: 181 EDLEESQKGKENLSLSVPLKTIDGLVKIMKLIDEENITLKSDGSKVFFQFSNVEILTRTI 240 Query: 238 DGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLKIT 293 D +FPDY+ +L +K + R +I + E G + N+L +T Sbjct: 241 DLQFPDYKSILNNSQHNKKILLNTKDFLSVLKRTSIFVRENKESKNGGIFNFANNKLLLT 300 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + E + +E + G +++I NV ++LD ++ ++ + + L ++ SSV + D Sbjct: 301 GTS-ENAQIKEEIVTIQEGEDLKISLNVKFLLDYISTIEGKVTVLELLNNKSSVIVRDED 359 Query: 354 SQSAAYVVMPMRL 366 + + Y MP+ L Sbjct: 360 NDKSLYFTMPLAL 372 >UniRef50_Q83H56 DNA polymerase III beta chain n=2 Tax=Tropheryma whipplei RepID=Q83H56_TROWT Length = 377 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 75/377 (19%), Positives = 152/377 (40%), Gaps = 19/377 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V+R L + V+ + RP PIL +L++ + ++L+ + E + Sbjct: 1 MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYETSAKVEFS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VP I + LP+ + + E E++ + G + L+ +P A++P L Sbjct: 60 NVIEGGKVLVPGTLISSISQKLPDEP-VEISKEDEKISLTCGPVNYILNLMPIAEYPPLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + ++ ++ +P + + S A D+ + G+ E + TD +R+AV Sbjct: 119 NLENAEQYRIPSEDFVKSVSQVTTSAAKDDISAVITGINLRLSNESIELTGTDRYRVAVK 178 Query: 181 SMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQI---GSNNIR-AHVGDFIFTSK 235 ++ P SVIV K + E+ + L ++ + V I G N + G+ TS Sbjct: 179 TLNSVSGHPSDSSVIVSSKTLFEVSKTLGNLESEISVFIKNDGENKVIGFESGNKTVTSL 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+ G +P ++ + + ++ R +++ E+ + +N + I + Sbjct: 239 LISGNYPPVAKLFTEETGHYAILKTSDFLESTKRVSVVV-ERDEPIEFSFVKNTVTIKGS 297 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV-----SSVQIE 350 A E ++ G E+ I ++ D L A + + +++ T V I Sbjct: 298 G--IALASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPGPVLIT 355 Query: 351 D----AASQSAAYVVMP 363 Y++ P Sbjct: 356 PKLSNKEKIDFKYLLQP 372 >UniRef50_Q2NKC4 DNA polymerase III, beta subunit n=4 Tax=Candidatus Phytoplasma RepID=Q2NKC4_AYWBP Length = 378 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 69/375 (18%), Positives = 160/375 (42%), Gaps = 9/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M + ++ L+ L ++ L + PI L +Q + L L + + + + Sbjct: 1 MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENKLILEANNGNIAIKIEIKDK 60 Query: 60 -VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ + G R F +I + + + +E +++++ + L + +F Sbjct: 61 SLKIKKQGKIACLGRYFIEIIKKINDSLIKITVMENNFLVIKTIFCEYKLKLMDVCNFLE 120 Query: 119 LD-DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 LD +Q F + K +I+ S + + R L G+ + L+ ATD R+ Sbjct: 121 LDFSFQKLDFFQIETHFFKNIIKEVNISTSKNEKRPILMGLNLIYQNNLLKACATDFFRM 180 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKL 236 + + + + ++++P K + EL ++L+ + L++ + I + + F + L Sbjct: 181 SQKKINLDIKYHNFNIVIPNKSLEELSKILEHCQSKHLKIYSDAQKIFLEIDNLWFQTSL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSE-NQLKI 292 ++G +P + + N + D L +A R ++L ++ ++E N ++I Sbjct: 241 LEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFYKEQINTNVIKFILTERNSIEI 300 Query: 293 TANNPEQEEA-EEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++++ A E+I+ + S +I FN Y+ DVL L + V + + I Sbjct: 301 SSSSESLGTALEKIIPLKVSANSFQIAFNAKYLEDVLKVLSVKEVVFYFDNPLKPFIITT 360 Query: 352 AASQSAAYVVMPMRL 366 S+ ++++P+ L Sbjct: 361 LEKDSSIHLILPIPL 375 >UniRef50_B8DQA6 DNA polymerase III, beta subunit n=4 Tax=Desulfovibrionales RepID=B8DQA6_DESVM Length = 388 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 163/381 (42%), Gaps = 19/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M +++E +++ LQ+ + + + L ++ L+ +G+LS+ TD +E A Sbjct: 1 MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE--RMLVRSGRSRFSLSTLPAADFPN 118 + +PG V R F D+ R LP G +I ++L+GE +L+ GR ++ L + F N Sbjct: 60 EIEQPGLAGVQGRAFVDLLRKLP-GGQITLKLDGESGNLLIEQGRRKYKLPVNDSVWFQN 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRL 177 ++ ++ ++ LI+ F ++ +D + + + + +GH+ Sbjct: 119 FSEFPADGSVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQNAIEACGLNGHQF 178 Query: 178 AVCSMPIGQ---SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD--FIF 232 A+ + LP +++ +K + EL + L G + + + I + GD F Sbjct: 179 AMLRFTHDELMAMLPPEGILIQKKYLGELKKWL--GTDEVELNISEKRLHFRTGDGKETF 236 Query: 233 TSKLVDGRFPDYRRVLPK---NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 + L ++PDY L K + LE A R I + + R + N Sbjct: 237 SLPLSYYQYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSNRCTYFDLDGNG 296 Query: 290 LKI----TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 +A + A E L+ TYSG +I F +++++ + E + + LT S Sbjct: 297 GGGDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRSERLGLTLTGSEG 356 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 + + ++MPM++ Sbjct: 357 PCGLTGSDDSEYTVIIMPMKI 377 >UniRef50_A5TXE7 DNA-directed DNA polymerase III beta subunit n=11 Tax=Fusobacterium RepID=A5TXE7_FUSNP Length = 381 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 161/381 (42%), Gaps = 17/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M V R++ L ++ V + PIL + +V + TGT+L+ + + + Sbjct: 1 MHIRVNRQNFLSAIRIVEKSIKENKIKPILSCIYAKVKGNKIYFTGTNLDTTIKTSIDVN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + + + + + G + + + S A D+PN Sbjct: 61 EVIREGEVAFYCSIIDEYLKEIKDEFIVLRVENGNILFIETEDSITEYDVFSAEDYPNTF 120 Query: 121 D----WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 + ++ +F +P + + E FS D +N + E+ + L V+T+ +R Sbjct: 121 ENIILNENNFKFEMPSQELVTIFENVLFSADTPD-NIAMNCIRIESILKHLHFVSTNTYR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSK 235 L I + +P SV VP + +++++ G DN + ++ ++ D +K Sbjct: 180 LTFLKKNIDKDIPDFSVSVPADTISSIIKIIKGLDNEVIKIYKEDAHLYFQYKDTTIITK 239 Query: 236 LVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILS---NEKFRGVRLYV-----S 286 L++ RFP+Y +L + DK L + L R I S +E + Sbjct: 240 LIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEFKHGEEN 299 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVS 345 N++ I+A N E E LDV + G +++I N Y+L+ + + K + + + S S Sbjct: 300 NNKMSISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEKELVLEFMYSNS 358 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 +V++ + + Y++MP+ L Sbjct: 359 AVKVYEKDNDEYIYILMPLAL 379 >UniRef50_C8WYB4 DNA polymerase III, beta subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYB4_ALIAD Length = 391 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 76/372 (20%), Positives = 149/372 (40%), Gaps = 18/372 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 MK T L K L+Q+ + +L ++L++ + + + +M + + Sbjct: 1 MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLC 60 Query: 59 L------VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLP 112 + V+ G+ +PA++ +++ + I V+ +R ++ G+++F L L Sbjct: 61 VEATDSSVEIARSGSCLLPAKELYEVIKR--ANGPITVETTTDRTVITFGKTKFELVGLQ 118 Query: 113 AADF-PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 F P D T+ + RLI T ++ R L G+ L VA Sbjct: 119 PRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSQTRPILTGVQLTLADGHLSAVA 178 Query: 172 TDGHRLAVCSMPIGQ-SLPSHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVG 228 TD RLA ++ + +++P + L L D + +G+++ G Sbjct: 179 TDALRLAQYTVSCEDVNGEDRQLVIPAVLLDTLATALPASDDDEEVTFTLGTSSCTVSWG 238 Query: 229 DFIFTSKL--VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 D F L ++G +PD R++P+ + L A R AILS + + Sbjct: 239 DDAFHMALRGLEGTYPDTARLIPERTAHRVVVERQALLTACERVAILSEADHQRAEFRFT 298 Query: 287 ENQLKITANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSV 344 + L ++A + + AEE L+ + + ++E+ NV Y + L AL V + L + Sbjct: 299 MSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDGIAQVEIGLNGPL 358 Query: 345 SSVQIEDAASQS 356 + + Sbjct: 359 QPCLLRPVGEEG 370 >UniRef50_P24117 DNA polymerase III subunit beta n=4 Tax=Mycoplasma mycoides group RepID=DPO3B_MYCCT Length = 375 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 72/371 (19%), Positives = 164/371 (44%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 M F++ R LL L + + + + P L + L V + +++ T + + + Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60 Query: 58 -ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 + ++ + G + + ++ R L + + +E +++++ S FS+ L + D+ Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIKTNNSDFSIGVLNSEDY 120 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + + +EF L +K+ I SM + + L G+ + + TD R Sbjct: 121 PLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNNQAIFSTTDSFR 180 Query: 177 LAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 ++ + I + +P K +EL ++LD +N L++ I I + + IF S Sbjct: 181 ISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDNVIFQSN 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITA 294 L+DG+FP+ + P + + + + +R +++++ V + V+E++++ + Sbjct: 240 LIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDKIEFKS 299 Query: 295 NNPEQEEAEEILD--VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + EE D V + I FN +++D + L + + + L +S + I + Sbjct: 300 FISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLSEDRIELKLINSTKPIVINNV 359 Query: 353 ASQSAAYVVMP 363 + V++P Sbjct: 360 YDEHLKQVILP 370 >UniRef50_B3PLR8 DNA polymerase III, beta subunit n=2 Tax=Mycoplasma RepID=B3PLR8_MYCA5 Length = 365 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 65/367 (17%), Positives = 161/367 (43%), Gaps = 10/367 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M+ + + L + +++V+ + P +P++ +L++ D L++ ++ E+ + + Sbjct: 1 MEIKINKWLLDEAIERVAKAVDQNPFIPVMKGILVEAQDSMLTIIASNGEISIKHVIPSS 60 Query: 59 -LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 +Q PG V +I + L +I+++ EG + V + R+SL+ +++P Sbjct: 61 VDMQILSPGIILVELSLLRNIVKKL--DGDISLKSEGNLLTVTTEFDRYSLNLYDTSEYP 118 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +D + +K + + F+ ++ + L + +L+ VAT+ +R Sbjct: 119 EIDFAVYGETLKIKWDELKSITKNVSFAASNNEANLVLCCVNISAHDGKLKFVATNKYRY 178 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 A + I + +V + K + +L + + + I + I V I SK+V Sbjct: 179 AEETKEIDSD-ANFNVSIQAKNLKDLTAF--DFKDSVLLNISEHKIAFEVDSTIIQSKVV 235 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 + + D R++P+ L+ L ++A+++ +E ++L + + L I + Sbjct: 236 NQPYQDVSRIVPREFATCLKIEKRELNNLLSKASVIISETNNKIKLSIVDGILMIASTRD 295 Query: 298 EQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E AE I + +Y G E+++ N Y+ + + + + + +T + ++ + + Sbjct: 296 EIANAEIITKNFSYDGDELKLALNSKYLREAIAVFEG-TINIHITKDKLRLVVKSDSHPN 354 Query: 357 AAYVVMP 363 + P Sbjct: 355 NIQLFTP 361 >UniRef50_A7HZD4 DNA polymerase III, beta subunit n=23 Tax=Campylobacteraceae RepID=A7HZD4_CAMHC Length = 356 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 162/365 (44%), Gaps = 12/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V++ L + + L + I ++L+ DG LS+ TD E+ + + V Sbjct: 1 MKVIVKKGVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYKNRNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G T K + +GL E EI ++ G + V+ RS++ L DFP Sbjct: 61 TVIDEGYATANGSKLMNAIKGL-EDDEITLETAGNSLFVKQKRSKYKLPMYNYTDFPEFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++ F + + R ++ S+ + +Y LNG L + + +++ V+TD RL++ Sbjct: 120 TIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINLVSTDTKRLSLY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++P S + +I+P+K + E+ ++ + + +N A F F SKL++G+ Sbjct: 180 TIPNQTSTANEKIIIPKKAINEIQKLFSDK---VEIFYDANVFLAVSESFEFFSKLINGK 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP Y +++ + + D + + + + +++ + N + + + + Sbjct: 237 FPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMCD----SMKITIKNNSILFESISEDNS 292 Query: 301 EAEEILDVTYSGAE-MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ ++ + +E +++D L+ ++ + + + ++ + Sbjct: 293 EAKTEIETSIQIENQIEFSIRNKFLMDFLSNIEENSFKFDFNNEKTAFCVSSG---DLKT 349 Query: 360 VVMPM 364 ++MP+ Sbjct: 350 IIMPI 354 >UniRef50_C6WF88 DNA polymerase III, beta subunit n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WF88_ACTMD Length = 365 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 157/370 (42%), Gaps = 12/370 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T L + V+ L GR P+L ++L+ G + L+G+D E + Sbjct: 1 MDLTATTSELASAVADVARLLPGRVLDPVLAGVVLRAGPGGVELSGSDRERSLRLS-RAA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 H GA VPA+ + R L E ++ + +EG R+ VR+G +RF+L L D P + Sbjct: 60 TTHSEGAALVPAKPLAETLRAL-ESPQVRLVVEGSRLAVRTGAARFALPLLELGDHPGVP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + V + P + A + + D G+ G+ L + +D +RL Sbjct: 119 ELPP-VAGSAPAGAFASALAAVATAASKDDALPVFTGVRVHAAGDRLELITSDRYRLGFA 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S+P + + + P + E+ + D + ++ ++ + G ++ L+ Sbjct: 178 SVPW--AGGALDALAPAVQLAEVAKQ-AARDERVELRADADRLALAWGGGSASTALLAAP 234 Query: 241 FPD--YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 FPD R++L + + D L A RAA S V+L + +L++ ++P+ Sbjct: 235 FPDERARKLLAAEGECTVVLEADELAGAVRRAAPYSGAHG-AVQLAAEDGELRVRGSDPQ 293 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS-- 356 E+ E + + SG + F V Y+ D L A V + + + S + S Sbjct: 294 AGESSESVKASVSGGLLTRSFQVRYLSDALRAFAGRRVELRVQSGLRSTVLTAEEDTSGV 353 Query: 357 -AAYVVMPMR 365 Y+V+P+R Sbjct: 354 RLTYLVVPLR 363 >UniRef50_Q6F2A8 DNA polymerase III, beta chain n=1 Tax=Mesoplasma florum RepID=Q6F2A8_MESFL Length = 373 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 67/371 (18%), Positives = 153/371 (41%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ ++ + LL L + S + + P L + ++V+ L + ++ A + Sbjct: 1 MRLSINKSVLLNELTKASKLIELKNVNPALQGVYMEVSFDKLVIVSSNTSTSFKAELNNE 60 Query: 61 Q----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 +PG V + ++ R L + + + +S +S L +F Sbjct: 61 NSDLIIEQPGRILVKPKFILELLRKLDSEFVTLSTFAENELEIITEKSNLKVSILNVEEF 120 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + ++ +E ++ K + T S+ + + L GM + + ++ V TD R Sbjct: 121 PLIGFVENGLELSIDSQEFKSTLTQTISSINEWNQKVVLAGMNLKIKDNKISFVTTDLFR 180 Query: 177 LAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 +++ + + ++ +I+P K +IEL +++ ++ I N + + + S Sbjct: 181 VSLKEIILNEATNQEVDIIIPYKTLIELRNLIENVKE-FKIIIHDTNATFKLDNDLLQST 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITA 294 L+DGR+P+ P + LE L + +R + +++ V L + ++ + + Sbjct: 240 LIDGRYPNVHSAFPTTHEIKLELKAKTLLKVLSRFELTNDQNITSVVNLEIQQSGIILKT 299 Query: 295 NNPEQEEAEEIL-DVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + EE + Y G + + I FN Y+++ + + + + + V I A Sbjct: 300 TIAETVKYEEKFTEYKYEGSSNLNINFNTKYLIEAIRSFDDQLIHLTFNSQNKPVLITGA 359 Query: 353 ASQSAAYVVMP 363 + VV+P Sbjct: 360 QKRDLKQVVLP 370 >UniRef50_C3I1F8 DNA polymerase III, beta subunit n=1 Tax=Bacillus thuringiensis IBL 200 RepID=C3I1F8_BACTU Length = 271 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 119/268 (44%), Gaps = 9/268 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F V + + L +VS + + +PIL + + ++L ++ + + + + Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 60 ------VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + G VPA+ F +I + +P I + + ++S SL+ PA Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIK-SKNEQIIKIQSEEITLSLNGFPA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +FPN+ + E + + + + T F++A + R L G+ +L ATD Sbjct: 120 DEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGLHIVLSNNKLICAATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ I + + + IVP + EL+++++ + + + ++I +G Sbjct: 180 SHRLAIRETRISSDVKA-NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTLGTTTLY 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCD 261 S+L++G++P+ ++P + + Sbjct: 239 SRLIEGKYPNISNLIPNDFKTIINVDRK 266 >UniRef50_A3EQC1 DNA polymerase III, beta chain n=3 Tax=Leptospirillum sp. Group II RepID=A3EQC1_9BACT Length = 387 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 154/386 (39%), Gaps = 25/386 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV++E L LQ+V+ + + I +L++ D L TD + V Sbjct: 1 MEITVDQEAFLDGLQRVALLAERKNLVQIGSFILIEARDQKAILFATDNQTGGRFEVP-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + PG TTV +K + R LP G +LE + R + L + ++ Sbjct: 60 EVRTPGKTTVAGKKLHQLFRELPSGKVSLTRLENGSTRIERERLMYDLKGIDPEEYVGFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE----ELRTVATDGHR 176 + +++ F + + LI T + + + +NG+LF E L V TDGHR Sbjct: 120 EIKADYSFLVSLEQIAGLIRKTLPFVLDDESKP-MNGVLFHRVREGSTVRLNIVGTDGHR 178 Query: 177 LAVCSMPIGQS-------LPSHSVIVPRKG----VIELMRMLDGGDNPLRVQIGSNNIRA 225 L ++ +G+ I+ +K + L L G + V + Sbjct: 179 LHHGTVLLGEDAGYDLAGQTESRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVNPKYATF 238 Query: 226 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 G F + ++L+ FP+YR P + +E LL+ + R +++S++K V Sbjct: 239 RWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAEIV-FSW 297 Query: 286 SENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMM------ 339 L ++ N E E+ E L V G+ + FN + +L + E +RM Sbjct: 298 DARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMDAVMDPD 357 Query: 340 -LTDSVSSVQIEDAASQSAAYVVMPM 364 S A + YV+MP+ Sbjct: 358 PAKSSSMPSIWSCAEEPDSRYVIMPL 383 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26464 DNA polymerase III subunit beta n=211 Tax=Gammap... 410 e-113 UniRef50_P0A120 DNA polymerase III subunit beta n=15 Tax=Gammapr... 388 e-106 UniRef50_Q9I7C4 DNA polymerase III subunit beta n=77 Tax=Proteob... 384 e-105 UniRef50_P22838 DNA polymerase III subunit beta n=29 Tax=Gammapr... 384 e-105 UniRef50_A7H676 DNA polymerase III, beta subunit n=6 Tax=Cystoba... 374 e-102 UniRef50_A5D6E5 DNA polymerase sliding clamp subunit n=2 Tax=Pep... 373 e-102 UniRef50_Q3JF38 DNA polymerase III, beta subunit n=4 Tax=Gammapr... 372 e-102 UniRef50_Q602N1 DNA polymerase III, beta subunit n=1 Tax=Methylo... 369 e-100 UniRef50_C1A3G7 DNA polymerase III beta subunit n=1 Tax=Gemmatim... 368 e-100 UniRef50_A0L3I8 DNA polymerase III, beta subunit n=1 Tax=Magneto... 367 e-100 UniRef50_D1CG53 DNA polymerase III, beta subunit n=1 Tax=Thermob... 366 e-100 UniRef50_Q0EVY9 DNA polymerase III subunit beta n=1 Tax=Mariprof... 365 1e-99 UniRef50_B0RLI9 DNA polymerase III beta chain n=34 Tax=Gammaprot... 365 1e-99 UniRef50_Q6MRS0 DNA polymerase III, beta subunit n=1 Tax=Bdellov... 365 2e-99 UniRef50_A4G155 DNA polymerase III, beta subunit n=14 Tax=Betapr... 364 2e-99 UniRef50_Q02D48 DNA polymerase III, beta subunit n=2 Tax=Acidoba... 364 4e-99 UniRef50_B9XEB7 DNA polymerase III, beta subunit n=3 Tax=Verruco... 362 1e-98 UniRef50_A6TJ77 DNA polymerase III, beta subunit n=3 Tax=Clostri... 361 2e-98 UniRef50_B8GXP6 DNA polymerase III subunit beta n=185 Tax=cellul... 361 3e-98 UniRef50_Q31JS4 DNA polymerase III, beta subunit n=1 Tax=Thiomic... 359 1e-97 UniRef50_Q7NGD9 DNA polymerase III beta subunit n=1 Tax=Gloeobac... 358 2e-97 UniRef50_Q252K1 DNA polymerase III beta chain n=2 Tax=Desulfitob... 357 4e-97 UniRef50_Q5HK00 DNA polymerase III subunit beta n=240 Tax=Bacill... 357 4e-97 UniRef50_Q1GXK0 DNA polymerase III, beta subunit n=2 Tax=Methylo... 356 8e-97 UniRef50_C9KQB1 DNA polymerase III, beta subunit n=2 Tax=Veillon... 356 9e-97 UniRef50_C5V0W8 DNA polymerase III, beta subunit n=1 Tax=Gallion... 356 1e-96 UniRef50_B2UQB4 DNA polymerase III, beta subunit n=2 Tax=Verruco... 355 2e-96 UniRef50_A1AJX3 DNA polymerase III, beta subunit n=10 Tax=Desulf... 354 4e-96 UniRef50_P52023 DNA polymerase III subunit beta n=13 Tax=cellula... 352 8e-96 UniRef50_B1ZXL9 DNA polymerase III, beta subunit n=2 Tax=Opituta... 352 1e-95 UniRef50_Q1LTW3 DNA polymerase III, beta subunit n=47 Tax=Bacter... 351 2e-95 UniRef50_A3DHZ5 DNA polymerase III, beta subunit n=5 Tax=Clostri... 349 8e-95 UniRef50_B5JPS7 DNA polymerase III, beta subunit n=1 Tax=Verruco... 349 1e-94 UniRef50_B1Y548 DNA polymerase III, beta subunit n=92 Tax=Betapr... 348 1e-94 UniRef50_B1L1K7 DNA polymerase III, beta subunit n=35 Tax=Clostr... 348 2e-94 UniRef50_B9ZMT6 DNA polymerase III, beta subunit n=1 Tax=Thioalk... 347 3e-94 UniRef50_D0LFL0 DNA polymerase III, beta subunit n=1 Tax=Haliang... 347 4e-94 UniRef50_B0TAK9 DNA polymerase iii, beta subunit n=2 Tax=Helioba... 347 5e-94 UniRef50_B0CDM3 DNA polymerase III, beta subunit n=1 Tax=Acaryoc... 346 8e-94 UniRef50_C0QRL0 DNA polymerase III, beta subunit n=3 Tax=Aquific... 344 2e-93 UniRef50_UPI0001C311AE DNA polymerase III, beta subunit n=1 Tax=... 344 3e-93 UniRef50_A7VRS4 Putative uncharacterized protein n=3 Tax=Bacteri... 344 3e-93 UniRef50_A7C334 DNA polymerase III, beta chain n=1 Tax=Beggiatoa... 343 8e-93 UniRef50_Q38ZS3 DNA-directed DNA polymerase III, beta subunit n=... 341 2e-92 UniRef50_C1F9N7 DNA polymerase III, beta subunit n=1 Tax=Acidoba... 341 2e-92 UniRef50_P72856 DNA polymerase III subunit beta n=43 Tax=Cyanoba... 341 3e-92 UniRef50_A5FYG4 DNA polymerase III, beta subunit n=2 Tax=cellula... 341 3e-92 UniRef50_D0MJZ8 DNA polymerase III, beta subunit n=1 Tax=Rhodoth... 340 4e-92 UniRef50_B8CZN5 DNA polymerase III, beta subunit n=1 Tax=Halothe... 340 6e-92 UniRef50_B0K0W9 DNA polymerase III, beta subunit n=11 Tax=Thermo... 339 1e-91 UniRef50_A3M0Q5 DNA polymerase III n=16 Tax=Acinetobacter RepID=... 338 2e-91 UniRef50_P27903 DNA polymerase III subunit beta n=29 Tax=Actinom... 338 2e-91 UniRef50_B7K0V0 DNA polymerase III, beta subunit n=13 Tax=Cyanob... 337 3e-91 UniRef50_Q1B045 DNA polymerase III, beta subunit n=1 Tax=Rubroba... 337 4e-91 UniRef50_Q1JZF2 DNA polymerase III, beta subunit n=1 Tax=Desulfu... 337 4e-91 UniRef50_B9KZ05 DNA polymerase III, beta subunit n=2 Tax=Thermom... 337 4e-91 UniRef50_C8WIM7 DNA polymerase III, beta subunit n=2 Tax=Corioba... 337 5e-91 UniRef50_C7MLD3 DNA polymerase III, beta subunit n=1 Tax=Cryptob... 336 8e-91 UniRef50_A4T4T7 DNA polymerase III, beta subunit n=20 Tax=Coryne... 335 1e-90 UniRef50_C8N933 DNA polymerase III, beta subunit n=1 Tax=Cardiob... 335 2e-90 UniRef50_B8FM62 DNA polymerase III, beta subunit n=1 Tax=Desulfa... 334 2e-90 UniRef50_Q67TK6 DNA polymerase III beta subunit n=1 Tax=Symbioba... 334 3e-90 UniRef50_C8WXS8 DNA polymerase III, beta subunit n=2 Tax=Alicycl... 334 3e-90 UniRef50_Q5GSK7 DNA polymerase III beta clamp subunit n=11 Tax=c... 334 4e-90 UniRef50_B5EJ65 DNA polymerase III, beta subunit n=3 Tax=Acidith... 333 5e-90 UniRef50_B4VWR6 DNA polymerase III, beta subunit n=5 Tax=Cyanoba... 332 9e-90 UniRef50_Q3Z759 DNA polymerase III, beta subunit n=5 Tax=Dehaloc... 332 1e-89 UniRef50_B2A2Y7 DNA polymerase III, beta subunit n=1 Tax=Natrana... 332 1e-89 UniRef50_B4UTW9 p081 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW9_B... 332 2e-89 UniRef50_B0S417 DNA polymerase III beta subunit n=2 Tax=Finegold... 331 2e-89 UniRef50_A6G5S7 DNA polymerase III, beta subunit n=1 Tax=Plesioc... 330 5e-89 UniRef50_C0GI72 DNA polymerase III, beta subunit n=1 Tax=Dethiob... 330 5e-89 UniRef50_C4V1P5 DNA polymerase III beta chain n=2 Tax=Selenomona... 330 5e-89 UniRef50_B8HRT6 DNA polymerase III, beta subunit n=2 Tax=Chrooco... 330 6e-89 UniRef50_C9XIB4 DNA polymerase III, beta chain n=6 Tax=Clostridi... 330 7e-89 UniRef50_Q3A8P3 DNA polymerase III, beta subunit n=1 Tax=Carboxy... 329 7e-89 UniRef50_B1GZ05 DNA polymerase III beta subunit n=1 Tax=uncultur... 329 1e-88 UniRef50_Q2JU25 DNA polymerase III, beta subunit n=2 Tax=Synecho... 329 1e-88 UniRef50_A5FGC6 DNA polymerase III, beta subunit n=12 Tax=Bacter... 329 1e-88 UniRef50_D1PRN1 DNA polymerase III, beta subunit n=1 Tax=Subdoli... 329 1e-88 UniRef50_Q2S6M1 DNA polymerase III, beta subunit n=1 Tax=Salinib... 329 1e-88 UniRef50_A0Q3U8 DNA polymerase III, beta subunit n=19 Tax=Franci... 328 2e-88 UniRef50_UPI00016C0202 DNA polymerase III subunit beta n=1 Tax=E... 328 2e-88 UniRef50_Q2RMJ6 DNA polymerase III, beta subunit n=1 Tax=Moorell... 328 3e-88 UniRef50_C9YCP5 DNA polymerase III subunit beta n=1 Tax=Curvibac... 326 6e-88 UniRef50_C7M837 DNA polymerase III, beta subunit n=7 Tax=Bactero... 326 8e-88 UniRef50_D1N691 DNA polymerase III, beta subunit n=1 Tax=Victiva... 325 1e-87 UniRef50_A8RAI6 Putative uncharacterized protein n=1 Tax=Eubacte... 325 1e-87 UniRef50_B9KGQ1 DNA polymerase III beta chain (DnaN) n=12 Tax=An... 325 1e-87 UniRef50_A8DJY7 DNA polymerase III beta subunit n=1 Tax=Candidat... 325 1e-87 UniRef50_D0KVU1 DNA polymerase III, beta subunit n=1 Tax=Halothi... 325 2e-87 UniRef50_Q1V1G8 DNA polymerase III n=5 Tax=root RepID=Q1V1G8_PELUB 325 2e-87 UniRef50_C7N0K1 DNA polymerase III, beta subunit n=1 Tax=Slackia... 323 6e-87 UniRef50_A5I9F2 DNA polymerase III beta chain n=6 Tax=Legionella... 323 6e-87 UniRef50_Q47TU0 DNA polymerase III beta subunit family protein n... 323 7e-87 UniRef50_O84078 DNA polymerase III subunit beta n=14 Tax=Chlamyd... 323 7e-87 UniRef50_C8VV98 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 323 7e-87 UniRef50_B2KAM5 DNA polymerase III, beta subunit n=1 Tax=Elusimi... 322 1e-86 UniRef50_D1VRK9 DNA polymerase III, beta subunit n=1 Tax=Peptoni... 322 1e-86 UniRef50_Q50790 DNA polymerase III subunit beta n=27 Tax=Coryneb... 322 1e-86 UniRef50_Q4FVT2 DNA polymerase III, beta subunit n=5 Tax=Moraxel... 321 2e-86 UniRef50_Q11UU6 DNA polymerase III, beta subunit n=13 Tax=Bacter... 320 3e-86 UniRef50_A8F4G9 DNA polymerase III, beta subunit n=7 Tax=Thermot... 320 4e-86 UniRef50_Q6MAH0 Putative DNA polymerase III, beta chain n=1 Tax=... 320 4e-86 UniRef50_B9KC54 DNA polymerase III, beta subunit n=1 Tax=Thermot... 320 4e-86 UniRef50_B8E2I1 DNA polymerase III, beta subunit n=2 Tax=Dictyog... 320 5e-86 UniRef50_C8NI23 DNA polymerase III, beta subunit n=1 Tax=Granuli... 320 5e-86 UniRef50_B8GBZ8 DNA polymerase III, beta subunit n=5 Tax=Chlorof... 319 1e-85 UniRef50_B5YGU0 DNA polymerase III, beta subunit n=1 Tax=Thermod... 319 1e-85 UniRef50_C6X4N3 DNA polymerase III beta subunit n=1 Tax=Flavobac... 319 2e-85 UniRef50_C7QFL8 DNA polymerase III, beta subunit n=3 Tax=Actinom... 318 2e-85 UniRef50_Q1NPP3 DNA-directed DNA polymerase n=2 Tax=Deltaproteob... 318 2e-85 UniRef50_Q2LYA2 DNA polymerase III, beta chain n=1 Tax=Syntrophu... 318 3e-85 UniRef50_D1BQ78 DNA polymerase III, beta subunit n=3 Tax=Veillon... 316 6e-85 UniRef50_C6XEX5 DNA polymerase III subunit beta n=1 Tax=Candidat... 316 6e-85 UniRef50_B2V9G3 DNA polymerase III, beta subunit n=2 Tax=Sulfuri... 316 7e-85 UniRef50_C0WAM5 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 316 7e-85 UniRef50_C4FYD9 Putative uncharacterized protein n=1 Tax=Catonel... 316 9e-85 UniRef50_Q1GC42 DNA polymerase III, beta chain n=4 Tax=Lactobaci... 316 1e-84 UniRef50_A9FMJ3 DNA polymerase III beta subunit n=1 Tax=Sorangiu... 315 1e-84 UniRef50_UPI0001C36FC0 DNA polymerase III subunit beta n=1 Tax=R... 315 1e-84 UniRef50_C9RQU7 DNA polymerase III, beta subunit n=1 Tax=Fibroba... 314 3e-84 UniRef50_C8W8K5 DNA polymerase III, beta subunit n=5 Tax=Corioba... 314 3e-84 UniRef50_C8XHU9 DNA polymerase III, beta subunit n=2 Tax=Actinom... 313 5e-84 UniRef50_Q7VQU9 DNA polymerase III beta-subunit n=2 Tax=Candidat... 312 1e-83 UniRef50_C8P210 DNA polymerase III, beta subunit n=2 Tax=Erysipe... 312 2e-83 UniRef50_B1I1H5 DNA polymerase III, beta subunit n=1 Tax=Candida... 311 2e-83 UniRef50_C1D6W8 DnaN n=29 Tax=Betaproteobacteria RepID=C1D6W8_LARHH 311 3e-83 UniRef50_C4WNF5 DNA polymerase III, beta subunit n=1 Tax=Ochroba... 311 3e-83 UniRef50_Q0AK26 DNA polymerase III, beta subunit n=20 Tax=Nitros... 310 6e-83 UniRef50_D2QRF3 DNA polymerase III, beta subunit n=1 Tax=Spiroso... 310 6e-83 UniRef50_A9KPP2 DNA polymerase III, beta subunit n=36 Tax=Bacter... 310 7e-83 UniRef50_A0LLR4 DNA polymerase III, beta subunit n=1 Tax=Syntrop... 309 1e-82 UniRef50_C6I687 DNA polymerase subunit III beta n=20 Tax=Bacteri... 309 1e-82 UniRef50_A7HMB7 DNA polymerase III, beta subunit n=3 Tax=Thermot... 308 2e-82 UniRef50_B3DWG7 DNA polymerase sliding clamp subunit n=1 Tax=Met... 307 6e-82 UniRef50_C3LH37 DNA polymerase III, beta subunit n=48 Tax=Bacill... 307 6e-82 UniRef50_Q0RUQ2 DNA polymerase III, beta chain n=25 Tax=root Rep... 306 7e-82 UniRef50_D2RMT4 DNA polymerase III, beta subunit n=1 Tax=Acidami... 305 1e-81 UniRef50_C3PE73 DNA polymerase III, beta subunit n=12 Tax=Coryne... 304 3e-81 UniRef50_D2MMX4 DNA polymerase III, beta subunit n=1 Tax=Bulleid... 304 3e-81 UniRef50_A5KS03 DNA polymerase III, beta subunit n=6 Tax=candida... 303 8e-81 UniRef50_A9B4J2 DNA polymerase III, beta subunit n=1 Tax=Herpeto... 303 8e-81 UniRef50_C3RP22 DNA polymerase III subunit beta n=4 Tax=Bacteria... 302 9e-81 UniRef50_Q0B0Z3 DNA polymerase III, beta subunit n=1 Tax=Syntrop... 302 2e-80 UniRef50_Q1RIS7 DNA polymerase III subunit beta n=15 Tax=Rickett... 301 2e-80 UniRef50_B7CCH7 Putative uncharacterized protein n=1 Tax=Eubacte... 301 2e-80 UniRef50_O83048 DNA polymerase III subunit beta n=4 Tax=Treponem... 301 3e-80 UniRef50_B7H828 DNA polymerase III, beta subunit n=20 Tax=Bacter... 299 8e-80 UniRef50_O67725 DNA polymerase III subunit beta n=2 Tax=Aquifica... 299 8e-80 UniRef50_C4DK83 DNA polymerase III, beta subunit n=1 Tax=Stackeb... 299 1e-79 UniRef50_A6C2Q1 DNA polymerase III, beta chain n=1 Tax=Planctomy... 298 2e-79 UniRef50_Q04HR5 DNA polymerase III, beta subunit n=2 Tax=Oenococ... 298 2e-79 UniRef50_A4XFI2 DNA polymerase III, beta subunit n=1 Tax=Caldice... 297 5e-79 UniRef50_Q6AQJ6 Probable DNA polymerase III, beta chain n=1 Tax=... 296 8e-79 UniRef50_B5Y6P1 DNA polymerase III, beta subunit n=1 Tax=Coproth... 296 1e-78 UniRef50_B1C8Z4 Putative uncharacterized protein n=1 Tax=Anaerof... 295 1e-78 UniRef50_P57127 DNA polymerase III subunit beta n=34 Tax=Buchner... 294 3e-78 UniRef50_C2KY13 Possible DNA-directed DNA polymerase n=1 Tax=Ori... 294 5e-78 UniRef50_A9D4N4 DNA polymerase III, beta chain protein n=1 Tax=H... 292 2e-77 UniRef50_C2BTM3 DNA polymerase III beta subunit n=1 Tax=Mobilunc... 292 2e-77 UniRef50_Q21QE8 DNA polymerase III, beta subunit n=1 Tax=Rhodofe... 291 3e-77 UniRef50_B0MRG5 Putative uncharacterized protein n=1 Tax=Eubacte... 290 4e-77 UniRef50_A6CJV3 DNA polymerase III subunit beta n=2 Tax=Bacillus... 289 8e-77 UniRef50_A1AV49 DNA polymerase III, beta subunit n=2 Tax=sulfur-... 289 1e-76 UniRef50_D0WL07 DNA polymerase III, beta subunit n=1 Tax=Actinom... 289 1e-76 UniRef50_A8SK33 Putative uncharacterized protein n=1 Tax=Parvimo... 289 1e-76 UniRef50_Q89B36 DNA polymerase III subunit beta n=1 Tax=Buchnera... 288 2e-76 UniRef50_B0MXV3 Putative uncharacterized protein n=1 Tax=Alistip... 288 2e-76 UniRef50_O54376 DNA polymerase III subunit beta n=76 Tax=Strepto... 288 3e-76 UniRef50_C1ZD41 DNA polymerase III, beta subunit n=1 Tax=Plancto... 287 3e-76 UniRef50_C9LP65 DNA polymerase III, beta subunit n=1 Tax=Dialist... 287 3e-76 UniRef50_C0R0U9 DNA polymerase III beta (Beta clamp) subunit n=2... 287 4e-76 UniRef50_C1TP63 DNA polymerase III, beta subunit n=2 Tax=Synergi... 287 4e-76 UniRef50_B9ML38 DNA polymerase III, beta subunit n=1 Tax=Anaeroc... 287 5e-76 UniRef50_C2D9K3 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 286 7e-76 UniRef50_B6YRT5 DNA polymerase III beta subunit n=26 Tax=Bactero... 286 8e-76 UniRef50_C0EA16 Putative uncharacterized protein n=1 Tax=Clostri... 285 1e-75 UniRef50_C0QD86 DnaN n=1 Tax=Desulfobacterium autotrophicum HRM2... 284 3e-75 UniRef50_Q04WF6 DNA-directed DNA polymerase, beta subunit n=7 Ta... 284 5e-75 UniRef50_Q7VH41 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 282 1e-74 UniRef50_Q2GAN7 DNA polymerase III beta subunit family protein n... 282 1e-74 UniRef50_B0VFV2 Putative DNA polymerase III, beta chain (DnaN-li... 280 4e-74 UniRef50_Q8ZSE2 DNA polymerase III beta subunit n=2 Tax=Nostocac... 280 4e-74 UniRef50_C7REZ6 DNA polymerase III, beta subunit n=5 Tax=Anaeroc... 279 9e-74 UniRef50_Q72H86 DNA polymerase III, beta chain n=6 Tax=Thermacea... 279 1e-73 UniRef50_C5NVV0 DNA polymerase III, beta subunit n=1 Tax=Gemella... 278 2e-73 UniRef50_C6V443 DNA polymerase III, beta subunit n=2 Tax=Neorick... 278 3e-73 UniRef50_D0YTZ8 DNA polymerase III, beta subunit n=2 Tax=Mobilun... 278 3e-73 UniRef50_C7LJX6 DNA polymerase III, beta subunit n=1 Tax=Candida... 277 3e-73 UniRef50_UPI00016C54E2 DNA polymerase III, beta chain n=1 Tax=Ge... 275 1e-72 UniRef50_Q1PVD8 Similar to DNA polymerase III beta subunit n=1 T... 275 1e-72 UniRef50_B0RH70 DNA polymerase III, beta chain n=4 Tax=Actinobac... 275 2e-72 UniRef50_A5EX08 DNA polymerase III, beta subunit n=1 Tax=Dichelo... 275 2e-72 UniRef50_Q7MTT8 DNA polymerase III, beta subunit n=2 Tax=Porphyr... 274 3e-72 UniRef50_B8F8V2 DNA polymerase III, beta subunit n=1 Tax=Desulfa... 274 4e-72 UniRef50_D1B7J0 DNA polymerase III, beta subunit n=1 Tax=Therman... 273 6e-72 UniRef50_C8WSN6 DNA polymerase III, beta subunit n=5 Tax=Alicycl... 273 7e-72 UniRef50_B8DV07 DNA polymerase III, beta subunit n=20 Tax=Bifido... 273 8e-72 UniRef50_Q82HZ6 Putative DNA polymerase III beta subunit n=1 Tax... 272 2e-71 UniRef50_Q8D3I6 DnaN protein n=1 Tax=Wigglesworthia glossinidia ... 272 2e-71 UniRef50_D2R8A9 DNA polymerase III, beta subunit n=3 Tax=Plancto... 269 9e-71 UniRef50_C1SNE0 DNA polymerase III, beta subunit (Fragment) n=1 ... 269 9e-71 UniRef50_C5JAN5 DNA polymerase III subunit beta n=1 Tax=uncultur... 269 1e-70 UniRef50_D2MK63 DNA polymerase III, beta subunit (Fragment) n=1 ... 268 2e-70 UniRef50_A6AHE8 DNA polymerase III, beta subunit (Fragment) n=1 ... 268 2e-70 UniRef50_B5CVF7 Putative uncharacterized protein n=2 Tax=Bactero... 267 4e-70 UniRef50_Q1J2H7 DNA polymerase III, beta subunit n=4 Tax=Deinoco... 267 6e-70 UniRef50_D2PYX2 DNA polymerase III, beta subunit n=1 Tax=Kribbel... 265 1e-69 UniRef50_A8ZRY7 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 265 2e-69 UniRef50_B9K2Q2 DNA polymerase III beta subunit n=1 Tax=Agrobact... 264 4e-69 UniRef50_A5CBW4 Chromosomal replication initiation protein n=6 T... 263 9e-69 UniRef50_P21174 DNA polymerase III subunit beta (Fragment) n=17 ... 262 1e-68 UniRef50_B7KMQ3 DNA polymerase III, beta subunit n=1 Tax=Cyanoth... 262 1e-68 UniRef50_Q058G0 DNA polymerase III, b subunit n=1 Tax=Buchnera a... 262 2e-68 UniRef50_A6Q665 DNA polymerase III, beta subunit n=4 Tax=Epsilon... 262 2e-68 UniRef50_A9BHL7 DNA polymerase III, beta subunit n=1 Tax=Petroto... 261 2e-68 UniRef50_C9RC59 DNA polymerase III, beta subunit n=2 Tax=Ammonif... 261 2e-68 UniRef50_B3ZXM6 DNA polymerase III, beta subunit n=1 Tax=Bacillu... 260 6e-68 UniRef50_A8Z6B4 DNA polymerase III, beta subunit n=1 Tax=Candida... 260 6e-68 UniRef50_B3QWU6 DNA polymerase III, beta subunit n=1 Tax=Chloroh... 258 2e-67 UniRef50_Q3B6Y8 DNA polymerase III, beta subunit n=10 Tax=Chloro... 257 4e-67 UniRef50_Q2JF20 DNA polymerase III beta subunit family protein n... 257 4e-67 UniRef50_C7H084 DNA polymerase III, beta subunit n=1 Tax=Eubacte... 253 6e-66 UniRef50_D1WRR1 DNA polymerase III, beta subunit n=5 Tax=Strepto... 253 7e-66 UniRef50_Q2B8R4 DNA polymerase III subunit beta n=1 Tax=Bacillus... 252 2e-65 UniRef50_C8PKQ5 DNA polymerase III, beta subunit n=2 Tax=Campylo... 252 2e-65 UniRef50_C8WYB4 DNA polymerase III, beta subunit n=2 Tax=Alicycl... 251 4e-65 UniRef50_C5EYP3 DNA polymerase III n=3 Tax=Helicobacter RepID=C5... 249 1e-64 UniRef50_B9L736 DNA polymerase III, beta subunit n=2 Tax=Nautili... 249 1e-64 UniRef50_C9M5Q0 DNA polymerase III, beta subunit n=1 Tax=Jonquet... 247 5e-64 UniRef50_Q83H56 DNA polymerase III beta chain n=2 Tax=Tropheryma... 247 6e-64 UniRef50_P34029 DNA polymerase III subunit beta n=2 Tax=Spiropla... 247 6e-64 UniRef50_C7NAH5 DNA polymerase III, beta subunit n=4 Tax=Fusobac... 245 2e-63 UniRef50_A8EQT1 DNA polymerase III, beta subunit n=2 Tax=Campylo... 245 3e-63 UniRef50_Q2NKC4 DNA polymerase III, beta subunit n=4 Tax=Candida... 244 4e-63 UniRef50_C3WBN0 DNA polymerase III beta subunit n=3 Tax=Fusobact... 243 7e-63 UniRef50_A7HZD4 DNA polymerase III, beta subunit n=23 Tax=Campyl... 243 1e-62 UniRef50_B3PLR8 DNA polymerase III, beta subunit n=2 Tax=Mycopla... 243 1e-62 UniRef50_C4XT11 DNA polymerase III beta subunit n=10 Tax=Desulfo... 242 2e-62 UniRef50_C0GS25 DNA polymerase III, beta subunit n=1 Tax=Desulfo... 242 2e-62 UniRef50_B8DQA6 DNA polymerase III, beta subunit n=4 Tax=Desulfo... 241 2e-62 UniRef50_UPI0001BC56D7 DNA polymerase III, beta chain n=2 Tax=Fu... 240 8e-62 UniRef50_A4V7F9 Putative DNA polymerase subunit n=1 Tax=Pseudomo... 239 1e-61 UniRef50_C7M115 DNA polymerase III, beta subunit n=1 Tax=Acidimi... 238 3e-61 UniRef50_A5TXE7 DNA-directed DNA polymerase III beta subunit n=1... 237 7e-61 UniRef50_A3EQC1 DNA polymerase III, beta chain n=3 Tax=Leptospir... 237 7e-61 UniRef50_P24117 DNA polymerase III subunit beta n=4 Tax=Mycoplas... 236 9e-61 UniRef50_Q6F2A8 DNA polymerase III, beta chain n=1 Tax=Mesoplasm... 236 1e-60 UniRef50_Q74P03 DNA polymerase III, beta subunit n=19 Tax=Bacill... 235 2e-60 Sequences not found previously or not previously below threshold: >UniRef50_P26464 DNA polymerase III subunit beta n=211 Tax=Gammaproteobacteria RepID=DPO3B_SALTY Length = 366 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 351/366 (95%), Positives = 358/366 (97%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV L Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG+RMLVRSGRSRFSLSTLPAADFPNLD Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEVEFTLPQATMKRLIE+TQFSMAHQDVRYYLNGMLFETEG ELRTVATDGHRLAVC Sbjct: 121 DWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 SMP+ SLPSHSVIVPRKGVIELMRMLDGG+NPLRVQIGSNNIRAHVGDFIFTSKLVDGR Sbjct: 181 SMPLEASLPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDYRRVLPKNPDKHLEAGCD+LKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE Sbjct: 241 FPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EAEEILDV+Y G EMEIGFNVSYVLDVLNALKCE VR+MLTDSVSSVQIEDAASQSAAYV Sbjct: 301 EAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSAAYV 360 Query: 361 VMPMRL 366 VMPMRL Sbjct: 361 VMPMRL 366 >UniRef50_P0A120 DNA polymerase III subunit beta n=15 Tax=Gammaproteobacteria RepID=DPO3B_PSEPK Length = 367 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 202/367 (55%), Positives = 265/367 (72%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 +P EPG TVPARK DIC+ LP A I ++++ +++LV++GRSRF+LSTLPA DFP ++ Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + L Q+ ++RLIE T F+MA QDVRYYLNGML E LR V+TDGHRLA+C Sbjct: 121 EGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALC 180 Query: 181 SMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 SM VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLVDG Sbjct: 181 SMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FPDY RVLPK DK + L++AF+R AILSNEK+RG+RL ++ QLKI ANNPEQ Sbjct: 241 KFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEE + V Y G+ +EIGFNVSY+LDVL + E VR++L+DS SS +++A + ++Y Sbjct: 301 EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSSY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_Q9I7C4 DNA polymerase III subunit beta n=77 Tax=Proteobacteria RepID=DPO3B_PSEAE Length = 367 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 204/367 (55%), Positives = 265/367 (72%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++ Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C Sbjct: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ S H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLVDG Sbjct: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNPEQ Sbjct: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +AY Sbjct: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_P22838 DNA polymerase III subunit beta n=29 Tax=Gammaproteobacteria RepID=DPO3B_PROMI Length = 367 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 305/367 (83%), Positives = 340/367 (92%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +ERE LLKPLQQVSGPLGGRPTLPILGNLLL+V + TLSLTGTDLEMEM+ARV+L Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q HE GATTVPARKFFDI RGLPEGAEI+V+L+G+R+LVRSGRSRFSLSTLPA+DFPNLD Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEVEFTLPQAT+KRLIE+TQFSMAHQDVRYYLNGMLFETE ELRTVATDGHRLAVC Sbjct: 121 DWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 +M IGQSLP HSVIVPRKGVIELMR+LDG G++ L++QIGSNN+RAHVGDFIFTSKLVDG Sbjct: 181 AMDIGQSLPGHSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFTSKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDYRRVLPKNP K + AGCD+LKQAF+RAAILSNEKFRGVR+ ++ QLKITANNPEQ Sbjct: 241 RFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNPEQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAEEI+DV Y G EMEIGFNVSY+LDVLN LKCE V+++LTD+VSSVQ+E+ AS +AAY Sbjct: 301 EEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEVKLLLTDAVSSVQVENVASAAAAY 360 Query: 360 VVMPMRL 366 VVMPMRL Sbjct: 361 VVMPMRL 367 >UniRef50_A7H676 DNA polymerase III, beta subunit n=6 Tax=Cystobacterineae RepID=A7H676_ANADF Length = 376 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 122/376 (32%), Positives = 197/376 (52%), Gaps = 10/376 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV-AL 59 M+ + L K L + G + + T+PIL ++LL+ G L ++ TDL++ + + Sbjct: 1 MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + GA V AR ++I R LPE + + VRSG S F + LPA DFP L Sbjct: 61 CEVLKEGALAVSARHLYEIVRALPEQQVTLKRAHNNYLEVRSGPSEFRIVGLPAEDFPAL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + +IE T F++++ + RY LNG+ FE E LR VATDGHRL++ Sbjct: 121 PRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRLVATDGHRLSL 180 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLDG------GDNPLRVQIGSNNIRAHVGDFIF 232 IG + VI+P+KG+ EL ++L ++ N+ I Sbjct: 181 SERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRRPGVIL 240 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 + +L++G FPDYR+V+PK +K L G D + R ++LS++K V+L + + LK+ Sbjct: 241 SMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQGTLKV 300 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + NP+ EA+E + V Y+G ++IGFN Y++DVL +K V++ L D +S + Sbjct: 301 LSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKSAEVQLELADDLSPGVMRGG 360 Query: 353 A--SQSAAYVVMPMRL 366 VVMPMR+ Sbjct: 361 DEKDAGFTAVVMPMRI 376 >UniRef50_A5D6E5 DNA polymerase sliding clamp subunit n=2 Tax=Peptococcaceae RepID=A5D6E5_PELTS Length = 369 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 109/369 (29%), Positives = 182/369 (49%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +RE+L LQ V + + LPIL + + D L LT TDLEM + + Sbjct: 1 MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSIT-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + +PGA +PAR ++ R LP+ I + + +R S S++ A ++P Sbjct: 60 EVLQPGAAVLPARYITELIRKLPDQPFLIESDQDTGHVTIRYASSEASMNCFQADEYPEF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + ++EFT+P T++ +I F++ + R G+LFE +++ VATD HRLA Sbjct: 120 PVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREGQVQVVATDTHRLAW 179 Query: 180 CSMPIGQ--SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + S ++I+P + + EL R+ G D ++V + + VG+ ++L+ Sbjct: 180 RKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLITRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G FP+YR+V+P+ + A L +A RA++LS + VRL N + +TA N Sbjct: 240 GGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTA-NS 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E E L V G ++I FN Y+ DVL + E + + T +S I S Sbjct: 299 EVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGSEEIDIEFTGPLSPGVIRPVGSTDY 358 Query: 358 AYVVMPMRL 366 +++P+RL Sbjct: 359 LSLLLPVRL 367 >UniRef50_Q3JF38 DNA polymerase III, beta subunit n=4 Tax=Gammaproteobacteria RepID=Q3JF38_NITOC Length = 367 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 166/368 (45%), Positives = 236/368 (64%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+++RE +++ L V G + R TLPIL N+LL V D LSL TDLE+E+ + ++ Sbjct: 1 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV ARKF +ICR LP G+ + Q + + + SGRSRF+LSTLPA DFP++D Sbjct: 61 S-SEEGKVTVSARKFLEICRALPSGSALEAQYKEGQFYIHSGRSRFTLSTLPAEDFPSID 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E L QA +K+L+ T F MAHQDVRYYLNG+L E E + VATDGHRLA+ Sbjct: 120 SIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIHAVATDGHRLALA 179 Query: 181 SMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S+ G + I+PRK ++EL+R+L+ P+R++ G+N +RA F++KL+D Sbjct: 180 SLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFSTKLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY+RV+P +K A + KQA R IL+N+K+RGV L++S+ +L+ N E Sbjct: 240 GQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIVTNLE 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 Q AEE LD+ Y G +EI FN Y++DVLN + + VR+ T++ SS I + + Sbjct: 300 QGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEVRLTFTNASSSCLITPIDASDSK 359 Query: 359 YVVMPMRL 366 YVVMPMRL Sbjct: 360 YVVMPMRL 367 >UniRef50_Q602N1 DNA polymerase III, beta subunit n=1 Tax=Methylococcus capsulatus RepID=Q602N1_METCA Length = 366 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 168/367 (45%), Positives = 229/367 (62%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + RE LL PLQQV G + R TLPIL N+L++V G + L GTDLE+++VA + Sbjct: 1 MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVAN-TDM 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G TVPARK DICR LPEG E+A ++ ER+ ++ G+SRF L LPA ++PN + Sbjct: 60 EGKESGRFTVPARKLMDICRLLPEGGELAFDVKPERVSLQCGKSRFILGALPAENYPNFE 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E F ++R IE T F+MA QDVRYYLNG+L E +R VA+DGHRLA+ Sbjct: 120 HGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQGRIRAVASDGHRLALF 179 Query: 181 SMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + +I+PRKGV+EL R+L + V+I +NN+R G F F KLV+G Sbjct: 180 EDAVDGMPDVARQIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFAVKLVEG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 R+PDY RV+PK + + L+ A R A+LSNEKF+GV L + E +++ A NPE Sbjct: 240 RYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLRAQNPEH 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEAE+ + SG +GFN SY+LD +NA+ + VRM TD+ S IED + + Sbjct: 300 EEAEDEVPADVSGEAFAVGFNASYLLDAINAVASDAVRMSFTDANGSCLIEDLSDSRYRF 359 Query: 360 VVMPMRL 366 +VMPMRL Sbjct: 360 IVMPMRL 366 >UniRef50_C1A3G7 DNA polymerase III beta subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3G7_GEMAT Length = 370 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 199/370 (53%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ RE L + LQ V+ + + TLP+L NLL++ D + + TDL++ + V+ Sbjct: 1 MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 PGA T+PA+K +I R LP +R+ + GRS+F L LP +FP Sbjct: 60 DVETPGAITIPAKKLGEIARELPPSPVKISASGEQRVTLECGRSKFKLLGLPRDEFPTFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + +++LI T F++++++ R LNG+L+E E +R VAT+GHRLA Sbjct: 120 SVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREERMRMVATNGHRLAKM 179 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 +P+ S P +IVP K + ++ R+ + L + G N++ ++LV+G Sbjct: 180 ELPVEASSAPPGDLIVPPKALEQIRRLFP-AEEELEIARGDNHLGFRSPFTSVFTRLVEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+Y +V+PK+ D++ A L A R +++++++ +++ + LK + P+ Sbjct: 239 PYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKFSVTTPDL 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS--- 356 EA + L + Y+G +++IGFN +Y+L++L + E VR+ + IE Sbjct: 299 GEASDELPINYTGDQLDIGFNATYLLEILRFMPTEQVRLTFKAPERAATIEPEGWDDPAK 358 Query: 357 AAYVVMPMRL 366 +VMP+RL Sbjct: 359 YLCLVMPLRL 368 >UniRef50_A0L3I8 DNA polymerase III, beta subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3I8_MAGSM Length = 376 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 137/377 (36%), Positives = 211/377 (55%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V RE LK LQ++ + R T+P LGN LL+ + L+LT TDLE+ M + Sbjct: 1 MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + GA V ARK F+I R LP+ + GER+++ GR+RF+L + A FP Sbjct: 60 EVESSGAIAVSARKLFEIVRELPQDSLRLRSEAGERLVLTCGRARFTLVGIRADIFPPFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET----------EGEELRTV 170 + FTL + +I T F+M+ + RY LNG+L E +R V Sbjct: 120 ETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVRIV 179 Query: 171 ATDGHRLAVCSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 ATD HRLA+ M + + +I+PRKGV E+ ++++ D + + + N IR Sbjct: 180 ATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSKPG 239 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 + TSKLV GRFP+Y+RV+P + LE + L R +LS+EK RG+R+ +S + Sbjct: 240 IVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSSDH 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 +K++A NPEQE AEE + +++G +M +GFN Y+ ++++ + VRM L D S V + Sbjct: 300 IKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANGDTVRMKLRDEESPVLV 359 Query: 350 EDAASQSAAYVVMPMRL 366 E+ ++ YV+MPMR+ Sbjct: 360 EEHSATGYLYVLMPMRV 376 >UniRef50_D1CG53 DNA polymerase III, beta subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG53_THET1 Length = 376 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 112/374 (29%), Positives = 173/374 (46%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E+L + L VS + R TLPILGN+LL G L L T+LE+ + V Sbjct: 1 MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWV-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TTVPAR F + LP + EG ++ V +G S + + DFP + Sbjct: 60 DIEREGVTTVPARLFTEFISSLPNEKVLLELNEGHKLHVAAGHSAADIHGMDPEDFPTVP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E + +K +IE F+ A D R L G+LF+ +G++L A DG RL+V Sbjct: 120 SASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGDKLTLAAADGFRLSVK 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFTSKLVD 238 I S S +VIVP K + L R++ + + + I N I + S+L+D Sbjct: 180 EQSINSSAESVNVIVPAKALDALSRLIGDHEEQVEITINPNKSQIVFQAENINVISRLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE------NQLKI 292 G FP+Y +++PK ++A RA I + V+L +S ++ + Sbjct: 240 GNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDTGKIVV 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A E + L+ T G +I FN Y+ DVL+ ++ + V + S I Sbjct: 300 SATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIESDQVALETQSPNSPGVIRPV 359 Query: 353 ASQSAAYVVMPMRL 366 + S +V+MPM L Sbjct: 360 GNGSYTHVIMPMHL 373 >UniRef50_Q0EVY9 DNA polymerase III subunit beta n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EVY9_9PROT Length = 366 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 202/367 (55%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+ R LL+ +Q+ + R T+PIL N+L++ +++T TDLE+ + + + Sbjct: 1 MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHIDG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV A+K F+I R L ++++ + + SG SRF ++T PA ++P + Sbjct: 60 SVEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGFISIVSGSSRFRVNTRPADEYPAMA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRLAV 179 + + ++ LP + +I AT F+M+ + R YL G LFE + + LR V TDGHRLA+ Sbjct: 120 EQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFELDDSQNLRLVTTDGHRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + Q+ + S IVP+K VIE+ ++ + + + I IR G TSKL+D Sbjct: 180 SEIRLQQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTSKLIDA 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFP Y+ V+P N Q R I++NE +RL S+ L I+A+N EQ Sbjct: 240 RFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISAHNSEQ 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EE+EE L Y G E+ IGFN Y+ D L A++ +V M L D +S V I + + Y Sbjct: 300 EESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRAPSVCMELKDELSPVLIRGEDDEQSRY 359 Query: 360 VVMPMRL 366 V+MPMR+ Sbjct: 360 VIMPMRI 366 >UniRef50_B0RLI9 DNA polymerase III beta chain n=34 Tax=Gammaproteobacteria RepID=B0RLI9_XANCB Length = 366 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 185/367 (50%), Positives = 266/367 (72%), Gaps = 2/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT++RE LKPL QV + R TLP+L NLL+QV +G LSLTGTDLE+EM++R +V Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISR-TMV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G TT+PARK FDI R LP+G+ + V G+++ V++GRSRF+L+TLPA DFP++D Sbjct: 60 EDAQDGETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFPSVD 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + ++ +P+A +K L+E T F+MA QDVRYYLNG+LF+ LR VATDGHRLA+C Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179 Query: 181 SMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + +S + +IVPRKGV EL+R+L+ D + +++G ++IR GD FTSKL+DG Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDY V+P D+ ++ + L+ + RAAILSNEK+RGVR+ VS QLKI+A+NPEQ Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAHNPEQ 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EEA+E ++ ++ IGFNV+Y+LD L+AL+ E+V + L D+ SS + +A+S+ + + Sbjct: 300 EEAQEEIEADTKVDDLAIGFNVNYLLDALSALRDEHVVIQLRDANSSALVREASSEKSRH 359 Query: 360 VVMPMRL 366 VVMP+RL Sbjct: 360 VVMPLRL 366 >UniRef50_Q6MRS0 DNA polymerase III, beta subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRS0_BDEBA Length = 368 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 4/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +++ LL + + + R T+PIL N+LL+ TL + TDLE+ + ++ V Sbjct: 1 MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIK-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q H+ G V A+ FDI + L EG ++ E + ++ G+ + + A ++P Sbjct: 60 QVHQAGKVAVSAKSLFDIAKELSEGPITLIKKENNWLEIKQGKYTSKIVGISAEEYPIFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-LRTVATDGHRLAV 179 + S+ + +K +I+ T +S++ + RY+LNG+ FE + + VATDGHR+++ Sbjct: 120 TYNSQAFIKIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQTGFKMVATDGHRMSL 179 Query: 180 CSMPIGQ--SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + P + VI+PRKG+ E+ ++L+ D + + + + I +L+ Sbjct: 180 VNKPSEDIKVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKHSSTILMIRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G++P+Y++ +P+ + + D + R ++L+N+K + V L +S +++I++NNP Sbjct: 240 EGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGRMEISSNNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E +A+E ++V Y G E++IGFN Y+ D+L ++ + + L D +S + Q+ Sbjct: 300 ELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQDKIDFELNDHLSPGLMRPHNDQTY 359 Query: 358 AYVVMPMRL 366 VVMPMR+ Sbjct: 360 TCVVMPMRI 368 >UniRef50_A4G155 DNA polymerase III, beta subunit n=14 Tax=Betaproteobacteria RepID=A4G155_HERAR Length = 368 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 158/368 (42%), Positives = 234/368 (63%), Gaps = 2/368 (0%) Query: 1 MKF-TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 M+ +R+ LL+PLQ VSG + R TLPIL N+L++ +S TD+E+++ + Sbjct: 1 MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 +E +TTV ARK DI R LP+ ++++ L +RM V+SG+SRF+L TL A +FP + Sbjct: 61 GSGNEIASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTV 120 Query: 120 DDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + TLPQ T+K L FSMA QD+RYYLNG+L +G+ + VATDGHRLA Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLA 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + Q VI+PRK +IEL R+L+ D P+ ++I ++ ++ GD SKLV+ Sbjct: 181 FCQVATEQEFARQEVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKLVE 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+PK + G D L ++ RAAI++++KF+GVR +S +KI++ N + Sbjct: 241 GKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNAD 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEEA E +++ Y G ++IGFNV+Y+LDVLN LK +N+ + L D+ SS I + Sbjct: 301 QEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKGDNINIALGDANSSALITVPDNPDFK 360 Query: 359 YVVMPMRL 366 YVVMPMR+ Sbjct: 361 YVVMPMRI 368 >UniRef50_Q02D48 DNA polymerase III, beta subunit n=2 Tax=Acidobacteria RepID=Q02D48_SOLUE Length = 372 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 193/374 (51%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV + L++ L G + + T+PIL N+LL+ AD ++LT TDLE+ + Sbjct: 1 MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G+ TVPARK D R LPEG L+ + SGRSR ++ + FP L Sbjct: 60 RVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGRSRTRIAGMSRESFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E +P T+ +I T F+++ ++ R+ LNG L E L VATDGHRLA Sbjct: 120 QMP-EPIAQVPVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTMVATDGHRLAYV 178 Query: 181 SMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDN--PLRVQIGSNNIRAHVGDFIFTSK 235 +S +VP+K + EL ++ D V N++ +G + ++ Sbjct: 179 QAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRLLITR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 + G FPDY RVLPK+ + ++ A R A ++E+ R +R+ + ++++ ++ Sbjct: 239 KLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQFADERSRAIRVQFNSGEVRVFSS 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS- 354 + E E+EE + Y+G ++EIGFN Y+LD L A+ ++V L D S+ ++ A Sbjct: 299 SVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAISQDHVAFELKDQKSAGELRPAGDA 358 Query: 355 --QSAAYVVMPMRL 366 YVVMPMR+ Sbjct: 359 IADQYRYVVMPMRI 372 >UniRef50_B9XEB7 DNA polymerase III, beta subunit n=3 Tax=Verrucomicrobia RepID=B9XEB7_9BACT Length = 369 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 195/372 (52%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T+ +E L+ LQ V + R TLPIL N+L++ L T TDL++ + V Sbjct: 1 MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GATTVP +K F I R L E +RSG S + ++ L A +FP L Sbjct: 61 -VKEGGATTVPVKKLFGIVRELNNPEIEIEVDEKNTCSIRSGSSFYKINGLSADEFPPLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + TLPQ +K +++ T F+++ + RY LNG+ + +L VATDG RLA+ Sbjct: 120 KFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEHKLTMVATDGRRLALV 179 Query: 181 SMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD-----FIFTS 234 + + S IVP K V EL R+L + ++ N + D + S Sbjct: 180 DEEVDVTEKSQGEFIVPAKAVNELNRLLTD-KGEVEIRYSENQAAFTLKDEKGFSILIIS 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 KL++G +P+YR+V+P + + + A RA I+++EK V+L S+N L ITA Sbjct: 239 KLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNNLAITA 298 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N+PE EA E L + Y G EM I FN YV+D LNAL + + + L D +S ++ + Sbjct: 299 NSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALSNDEIFLELIDELSPGVVKI--N 356 Query: 355 QSAAYVVMPMRL 366 YVVMPMRL Sbjct: 357 GPFLYVVMPMRL 368 >UniRef50_A6TJ77 DNA polymerase III, beta subunit n=3 Tax=Clostridiaceae RepID=A6TJ77_ALKMQ Length = 368 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 184/368 (50%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F+ ++ L+ + V + + TLPIL + ++ + L L GTDLE+ + + Sbjct: 1 MHFSCSQKALMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEHVME-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G V AR F +I R LP+ E ++ ++ + F++ +FP L Sbjct: 60 DVLQEGIVVVDARLFSEIIRKLPDAEVDITLKENNQLEIKCASTEFNILVYSPDEFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + + Q K +I T F+ + + R L G+L E E L VA DG+RLA+ Sbjct: 120 IVEEDQVYEIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEENTLNMVALDGYRLALR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I +H V+VP K + E+ R+L + PL + + +N+ G S+L++G Sbjct: 180 KGKI-SGNSNHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLISRLLEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPE 298 F +Y+++LPK + + + RA++L+ E + VR V++ ++ IT+ N E Sbjct: 239 EFINYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVITS-NSE 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + E +++ G ++EI FN Y +D L + E V + T ++S ++ A+++ Sbjct: 298 LGKVHEEINIVLEGEDIEIAFNSKYFIDALKVIDDEEVCLEFTTNLSPGILKPLANENYT 357 Query: 359 YVVMPMRL 366 Y+V+P+RL Sbjct: 358 YLVLPVRL 365 >UniRef50_B8GXP6 DNA polymerase III subunit beta n=185 Tax=cellular organisms RepID=DPO3B_CAUCN Length = 372 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 138/373 (36%), Positives = 202/373 (54%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+ER LLK L V + R T+PIL N+LL LS + TDL+ME++ Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDE-GFA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL--EGERMLVRSGRSRFSLSTLPAADFPN 118 Q PG T PA ++I R LP+GA++++ + R+++++GRSRF+L LPA DFP Sbjct: 60 QIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPV 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE----ELRTVATDG 174 + + + RLI+ T+F+++ ++ RYYLNG+ T E +LR VATDG Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179 Query: 175 HRLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ MP + VIVPRK + E R+++ + +Q+ +R G T Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 SK++DG FPDY RV+P++ K L DL +A R A +S EK R V+L V ++ +T Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 N E +A E ++V Y G EIGFN Y+LDV + D S + D Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPV 359 Query: 354 SQSAAYVVMPMRL 366 YV+MP+R+ Sbjct: 360 DPGVKYVLMPLRV 372 >UniRef50_Q31JS4 DNA polymerase III, beta subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JS4_THICR Length = 368 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 164/368 (44%), Positives = 240/368 (65%), Gaps = 2/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ RE+LLK LQ V G + R T+PIL N+L QV TL++T +DLE+E A L Sbjct: 1 MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + T+PA K I R LP+G I ++ + R + +GRSRF LSTLPA DFP +D Sbjct: 61 SSDGDFSVTLPAVKLISIVRSLPDGLTILLEFDEMRCQLSAGRSRFKLSTLPADDFPTID 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 Q+E+ F++ Q +K++I T F+MA QDVR+YLNGMLF+ + LR VATDGHRL+ C Sbjct: 121 LTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRVVATDGHRLSTC 180 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S + + L + I+PRKGV+EL +++ D+ + + N + + +FT KLVDG Sbjct: 181 STLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTCKLVDG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPD+ RVLP++ D+ ++ +LL+ RAAILSN+KF+G+RL +S+N L + A N +Q Sbjct: 241 RFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHAQNSDQ 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI-EDAASQSAA 358 +E+ E + + Y+G EMEIGFNV+Y+LDVLN++ E V + + D+ SS + + Sbjct: 301 DESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMHEEAVTLYMKDANSSCMVDTQNETCHCQ 360 Query: 359 YVVMPMRL 366 +V+MPMRL Sbjct: 361 HVIMPMRL 368 >UniRef50_Q7NGD9 DNA polymerase III beta subunit n=1 Tax=Gloeobacter violaceus RepID=Q7NGD9_GLOVI Length = 376 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 172/374 (45%), Gaps = 8/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD--GTLSLTGTDLEMEMVARVA 58 MK + L + L V + RPT PIL N+LL+ GT++LTG DL++ + R A Sbjct: 1 MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 Q G TT+PAR DI LP + E + + G S++ + A +FP Sbjct: 61 AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSEDNAISLVCGSSQYQVQGASAEEFPK 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L + LP + ++ + F+ + + + LNG+ + E + VATD HRL+ Sbjct: 121 LPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEFVATDAHRLS 180 Query: 179 VCSMPIGQSLPSHSVI---VPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTS 234 I +P + V EL ++L + V+ + + T+ Sbjct: 181 FYRTDFTLPEAGTQAIAAVLPVRSVRELEKILGAQAGDSVEVRFDEKQMIFQFPNQTLTT 240 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL--KI 292 +L+ GR+PDY+++LPK + + L R A+L+++K V+L + ++ + Sbjct: 241 RLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSEHLMTV 300 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + P+ E + V YSG + + FNV Y+L+ L A+ +V L + ++ Sbjct: 301 SVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATDVSFCLNGASDPAVLKPV 360 Query: 353 ASQSAAYVVMPMRL 366 + Y++MP+ + Sbjct: 361 GDGNYQYLIMPVSI 374 >UniRef50_Q252K1 DNA polymerase III beta chain n=2 Tax=Desulfitobacterium hafniense RepID=Q252K1_DESHY Length = 385 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 174/367 (47%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L+ + V + + TLP+L ++++ +L TDLE+ + V Sbjct: 19 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVP-A 77 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q + G +P+R F D+ R LP+ I ++L+ + + + S SL +FP L Sbjct: 78 QVEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDVINIHYNESDLSLRGYDPEEFPLLP 136 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D F LP + K +I+ T F+ + ++ R G L + E LR +ATD HRLA Sbjct: 137 DLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRLIATDTHRLAYR 196 Query: 181 SMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I I+P K + E+ R+L D L ++ I G S+L++G Sbjct: 197 IAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSRLIEG 256 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA-NNPE 298 +FP+Y++V+P++ + L + + RA++L+ + + +S + +++ E Sbjct: 257 QFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSIDQTSE 316 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + E ++V G +++I FN ++LDVL + E + L+ S S I + Sbjct: 317 LGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDSEEIVFELSGSYSPGIIRPVDDPNYL 376 Query: 359 YVVMPMR 365 Y+ +P+R Sbjct: 377 YLALPVR 383 >UniRef50_Q5HK00 DNA polymerase III subunit beta n=240 Tax=Bacilli RepID=DPO3B_STAEQ Length = 377 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 181/374 (48%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M+FT++R++ + L + R TLPIL + + + + LTG+D E+ + + Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61 Query: 59 -----LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 +V+ E G+ +P R F DI + LP E + L+ SG S F+LS L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNEQFQTLITSGHSEFNLSGLDP 121 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +P L + + L +K +I T F+++ + R L G+ + + EL ATD Sbjct: 122 DQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTATD 181 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLAV + + + +VI+P K + EL +++ D + + SN + VG+ F Sbjct: 182 SHRLAVRKLQLEDESENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRVGNINFI 241 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKI 292 S+L++G +PD R+ P+N + L A RA++L+ E ++L +++ Sbjct: 242 SRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTGNELVEL 301 Query: 293 TANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++ +PE +E ++ G ++I FN Y++D L A+ + V + ++ ++ Sbjct: 302 SSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKP 361 Query: 352 AASQSAAYVVMPMR 365 S +++P+R Sbjct: 362 KDDDSVTQLILPIR 375 >UniRef50_Q1GXK0 DNA polymerase III, beta subunit n=2 Tax=Methylophilales RepID=Q1GXK0_METFK Length = 367 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 225/368 (61%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + R+ LLKPL VS + R TLPIL NLLL+ + LT TDLEM++ V Sbjct: 1 MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E +TT+ A+K DICR LPE AEI + + R+ V++G+SRF+L TLPA D+P + Sbjct: 61 AGGEL-STTISAKKLLDICRSLPENAEITMATQDSRIQVKTGKSRFNLQTLPAGDYPLMT 119 Query: 121 DWQSEVE--FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + Q ++KRL + +F+MA QD+RYYLNG+LFE G L V TDGHRL+ Sbjct: 120 KTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGNRLNVVGTDGHRLS 179 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S + S +I+PRK VIEL+++LD ++ + +++ + GD SK++D Sbjct: 180 FTSTELASSYEKQEIILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLISKVID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+P ++ + RA+ILSNEK+RG+R+ +S N LK+ + N E Sbjct: 240 GKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLISTNSE 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEEAEE L+++Y G+ ++IGFNV+Y++DVLN E+V D+ SS + + Sbjct: 300 QEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDSESVTFSFADANSSCLVTVENDDNYK 359 Query: 359 YVVMPMRL 366 YVVMPMR+ Sbjct: 360 YVVMPMRI 367 >UniRef50_C9KQB1 DNA polymerase III, beta subunit n=2 Tax=Veillonellaceae RepID=C9KQB1_9FIRM Length = 370 Score = 356 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 188/368 (51%), Gaps = 4/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T + L LQ V+ + +P PIL + L+ TL L T+ E+ +VAR+ Sbjct: 1 MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG TV R F ++ R LP E ++A + + + + S ++F+L ++ AA+FP + Sbjct: 60 DIEEPGELTVGGRYFQEVVRKLPGENVKLACTADEKIVHIESAMAKFTLLSMNAAEFPTI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + ++F + ++ LI+ T F+ + + R G E ++ AT+ HRL+V Sbjct: 120 QPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTENKVTMAATNTHRLSV 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S QS+ + VI+P + + EL+ + +++ N I + TS+L++ Sbjct: 180 KSETFDQSIGNIKVIIPSRILQELLHNMSSDIPTDVKISCSYNQISFSFDNLYMTSRLIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNP 297 G+FP+YR V+P + H++ A R ++++ + ++L ++NQ+ IT+NNP Sbjct: 240 GQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHITSNNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E AEE + G ++ I FN Y++DVL + + R+ L +S I++ S Sbjct: 300 EIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDSKTCRIGLNQPLSPASIQEEDDDSF 359 Query: 358 AYVVMPMR 365 Y+V P+R Sbjct: 360 VYIVTPVR 367 >UniRef50_C5V0W8 DNA polymerase III, beta subunit n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0W8_9PROT Length = 368 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 144/365 (39%), Positives = 220/365 (60%), Gaps = 3/365 (0%) Query: 4 TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-LVQP 62 +E+E LLKPLQ V G + + T+PIL N+L++ G + T TDLE+++ + Sbjct: 5 KIEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADH 64 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-D 121 A TV +K +I R LP+ ++++++++ + ++S +S+F+L +LPA DFP L Sbjct: 65 ESNAAITVGGKKLQEILRILPDQSKVSIEVKENKAQIKSNKSKFNLQSLPAQDFPTLSNQ 124 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + +L Q +K L + QF+MA QDVRYYLNG+LF E R VATDGHRLA + Sbjct: 125 LADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVIEDNIFRAVATDGHRLAYNA 184 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRF 241 + I S +I+PRK ++EL ++L D + ++ S ++A T+KL++G+F Sbjct: 185 IAIESSSEKIEIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTKLIEGKF 244 Query: 242 PDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEE 301 PDY+RV+P N HL L++QA RAAILSNEKFRGVR ++E L I ++N EQEE Sbjct: 245 PDYQRVIP-NYTNHLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISSNSEQEE 303 Query: 302 AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVV 361 A+ ++ Y G ++IGFNV+Y++D L+++ E + SS+ I YVV Sbjct: 304 AQVEIETDYHGEAIDIGFNVNYLMDGLSSVHSEMAIFSFGNPNSSILITSPDDLEFRYVV 363 Query: 362 MPMRL 366 MPMR+ Sbjct: 364 MPMRI 368 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 52/174 (29%), Gaps = 5/174 (2%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 K ++ + L V + + L +L + D TD +A+ Sbjct: 130 KISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVIEDNIFRAVATDGHRLAYNAIAIES 189 Query: 62 PHEPGATTVPARKFFDICRGL-PEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E +P + ++ + L + I ++ +++ + + FP+ Sbjct: 190 SSEKIEIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTKLIEGK-FPDYQ 248 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 L + ++ + G+ F + L ++++ Sbjct: 249 RVIPNYTNHLSINRTLVQQALQRAAILSNEK---FRGVRFVLTEKNLCIISSNS 299 >UniRef50_B2UQB4 DNA polymerase III, beta subunit n=2 Tax=Verrucomicrobiaceae RepID=B2UQB4_AKKM8 Length = 366 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 186/367 (50%), Gaps = 6/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ ++ L L+QV+ + + TLPIL N+ ++ +G + T TDL++ + V Sbjct: 1 MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G T+PA+K I LPE + + V GRS+F L+ LPA +FP L Sbjct: 60 NVLREGTVTLPAKKLVSIISELPEAEVQVDVNQRNQAAVECGRSQFKLNGLPADEFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + Q ++ I T+++++ RY LNG+ ++ VATDG RLA+ Sbjct: 120 SFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGISLSFRNGKMTLVATDGRRLALA 179 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + I+P K V EL R+LD + ++ N + D + SKL+DG Sbjct: 180 ETALEFPEEQQLDAILPTKAVGELRRLLDEV-GTVTIRFTRNQAAFEINDTLLISKLIDG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+YR+V+P + + +E C L + R ++LS +K ++L EN+L++ ++ Sbjct: 239 NYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVASSAEGV 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV-RMMLTDSVSSVQIEDAASQSAA 358 EA E + +TYSG + I FN + + L + + V + L D +S ++ Sbjct: 299 GEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTVITLNLIDEMSPGVLKI--GDEFL 356 Query: 359 YVVMPMR 365 YV+MPMR Sbjct: 357 YVLMPMR 363 >UniRef50_A1AJX3 DNA polymerase III, beta subunit n=10 Tax=Desulfuromonadales RepID=A1AJX3_PELPD Length = 373 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 208/374 (55%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F +++E LK LQ++ G + R ++PIL N+LL+ + +L +T TDLE+ M Sbjct: 1 MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGMKCIYP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + PG TV A+K ++I + LP + + + +R G+ F++ L A +FP Sbjct: 60 EILSPGRITVGAKKIYEIVKELPNQQISFSAKDNDWVEIRCGKVHFNIVGLSAEEFPYFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE-----LRTVATDGH 175 + E F + A +K +IE T +++ + D +Y LNG+ +TE + L+ VATDGH Sbjct: 120 EVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVATDGH 179 Query: 176 RLAVCSMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 RL++ S P + S VI+P+KGV EL ++ + L N+ GD Sbjct: 180 RLSIASCPFKGNAGQELSKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRGDSYM 239 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 +LVDG FPDY RV+P + D+ + CD + R AILS+EKF+G+ L +SE+ ++I Sbjct: 240 VMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISESSIRI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +++NPE +A E +DV+Y G + FN Y+LDVL + E+V M D ++ I Sbjct: 300 SSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTETESVEMKFKDELAPSIILPD 359 Query: 353 ASQSAAYVVMPMRL 366 S S V+MPMRL Sbjct: 360 KSDSFLAVIMPMRL 373 >UniRef50_P52023 DNA polymerase III subunit beta n=13 Tax=cellular organisms RepID=DPO3B_SYNE7 Length = 375 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 176/374 (47%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVA 58 MK + L L VS + RP P+L N+LL G LSLT DL + + A Sbjct: 1 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 Q GA T+PA+ DI LP +++ ++ + G ++ + + A +FP Sbjct: 61 -AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAATLSVGSGQYQMRGISADEFPE 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L QS+ L + + + T F+ + + + L G+ + + + L ATDGHRLA Sbjct: 120 LPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAATDGHRLA 179 Query: 179 VCSMPIGQSLP--SHSVIVPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFIFTS 234 V + P +V VP + + +L RM+ G D + + GD TS Sbjct: 180 VVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQYLTS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKI 292 + +DG++P+Y +++P+ ++++ L A R A+L++++ +RL + N+L + Sbjct: 240 RTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENNRLAL 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + +E + G +EI FNV Y+ + L AL ++++ L + S V + Sbjct: 300 AVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTDIQIQLNSNTSPVVLSPL 359 Query: 353 ASQSAAYVVMPMRL 366 Y+VMP++L Sbjct: 360 GPVKITYLVMPIQL 373 >UniRef50_B1ZXL9 DNA polymerase III, beta subunit n=2 Tax=Opitutaceae RepID=B1ZXL9_OPITP Length = 374 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 118/377 (31%), Positives = 199/377 (52%), Gaps = 15/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+H L QV +G + T+PIL N+L++ +SLT T+L++ + ++ Sbjct: 1 MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E GA T+P ++ I R LP ++ + SG S F + + +FP L Sbjct: 60 EVKETGAVTLPVKRLATIVRELPNVDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPPLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E FTL Q+ + ++++ ++ + + RY LNG+ F + +L VATDG RLA+ Sbjct: 120 EFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYFNFKDGKLSLVATDGRRLALV 179 Query: 181 SMPIGQSLPSHSVIV-PRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----------GD 229 S + S I+ P K V ELMR+LD G+ L++ + Sbjct: 180 SKELEVPADSAGAIILPAKTVSELMRLLDKGEK-LKINFNDRRAAFQIATDKDSSGLVES 238 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 SK+V+G +P+Y++V+PK + ++ +L Q RAA++ +EK V++ +S N Sbjct: 239 VYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIKLSSNL 298 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L+ITA +P+ EA E + + YSG E+++ FN ++V+D L AL + + L D VS Sbjct: 299 LEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRALTKDEIFFELKDDVSPGVF 358 Query: 350 EDAASQSAAYVVMPMRL 366 + S V+MP+RL Sbjct: 359 KTLD--SFLCVIMPVRL 373 >UniRef50_Q1LTW3 DNA polymerase III, beta subunit n=47 Tax=Bacteria RepID=Q1LTW3_BAUCH Length = 370 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 220/370 (59%), Positives = 284/370 (76%), Gaps = 4/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ER++LLKPLQQVS L GR LPIL +LLLQV + L LTGT+LE+E+VA++ + Sbjct: 1 MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G V ARK FDICR LPE A I + LEG MLV +GRSRFSL TLPA +FP + Sbjct: 61 KVDKIGIIMVCARKLFDICRSLPEDALINITLEGTVMLVIAGRSRFSLMTLPATNFPKIA 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D ++++ F LP T+K++I++TQFSMAHQDVRY LNG+LFE G+ELRTVATDGHRLA C Sbjct: 121 DGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELRTVATDGHRLAAC 180 Query: 181 SMPIG--QSLPSHSVIVPRKGVIELMRM--LDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 ++ I + LP S+IVPRKGVIEL+R+ LD GDN +++QI SNNIR ++ ++IFTS L Sbjct: 181 TIYINVLKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNYIFTSNL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G FPDY VLPKN +K L+ DL+KQA R AILSN+KFR VRLY+ +NQLKITA N Sbjct: 241 IEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQLKITAKN 300 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 EQEEAEEILDV+Y G E+E+ FNV+Y+LD+L LKC+ VR++ + SSVQI+D + Sbjct: 301 LEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKCDTVRLLFNNEASSVQIDDCMNPM 360 Query: 357 AAYVVMPMRL 366 + Y+VMPMR+ Sbjct: 361 SIYIVMPMRM 370 >UniRef50_A3DHZ5 DNA polymerase III, beta subunit n=5 Tax=Clostridium RepID=A3DHZ5_CLOTH Length = 366 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 180/367 (49%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E L++ + V + + TL IL +LL+ D +TG DLE+ + + Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLID-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G+ + ++ F DI R LP+ + E +++ S F L +P+ FP+L Sbjct: 59 DILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKENNTVIIECDNSHFELRGMPSDSFPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E + Q ++ +I T F+++ + R L G L E G E+ V+ DG R+A+ Sbjct: 119 SIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITFVSIDGFRMALR 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + SV+VP K + E+ ++L D + + N I +G+ S+L++G Sbjct: 179 KNFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSRLLEGE 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNPEQ 299 + +Y+ ++P + + + L + RA+++ S+EK V+ + ++++ IT+ N E Sbjct: 239 YLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITS-NTEI 297 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + V +G+ ME+GFN Y ++ L + E V + SV I S AY Sbjct: 298 GAVREEIRVEVNGSNMEVGFNPRYFIEALRVIDDELVDIYFNSSVGPCTIRPLEGDSFAY 357 Query: 360 VVMPMRL 366 +++P+R+ Sbjct: 358 MILPVRI 364 >UniRef50_B5JPS7 DNA polymerase III, beta subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPS7_9BACT Length = 380 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 117/383 (30%), Positives = 205/383 (53%), Gaps = 21/383 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+H LQQV +G + T+PIL N+L++ T+SLT T+L++ + AR+ Sbjct: 1 MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA T+P ++ I + LP ++ + SG S F + + +FP L Sbjct: 60 TIEEEGAVTLPVKRLATIVKELPNSDVKVEASPSNQVKIASGGSNFKIMGISREEFPALP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET------EGEELRTVATDG 174 ++ + FT+ Q T+ +I++ ++ + + RY LNG+ F L VATDG Sbjct: 120 EFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVATDG 179 Query: 175 HRLAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV------ 227 RLA + S S+I+P K V EL+R+LD G+N L++ + + Sbjct: 180 RRLAKTDHEMEVGEGMSGSLILPAKTVSELVRLLDKGEN-LKIAFNDRRVAFQIHTKDDS 238 Query: 228 ----GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 GD SK+V+G +P+Y++V+PK + ++ +L Q+ RAA+++ +K V++ Sbjct: 239 DGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSNQVKI 298 Query: 284 YVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDS 343 +S N ++++A++P+ E+ E L + YSG ++++ FN +++D L AL + + L D Sbjct: 299 QISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKALTKDELFFELKDE 358 Query: 344 VSSVQIEDAASQSAAYVVMPMRL 366 VS + +S V+MP+RL Sbjct: 359 VSPGVFKTL--ESFLCVIMPVRL 379 >UniRef50_B1Y548 DNA polymerase III, beta subunit n=92 Tax=Betaproteobacteria RepID=B1Y548_LEPCP Length = 381 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 217/378 (57%), Gaps = 14/378 (3%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 +E +L LQ VSG + R TLPIL N+L++ + G LT +DLE+++ L Sbjct: 4 LKAAQEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGD 63 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 +TTV ARK DI R LP + + ++ ++ G+SRF+L TLPA DFP + + Sbjct: 64 ESAFSTTVGARKLIDILRMLPSDQIVTLTAAQNKLTLQGGKSRFTLQTLPADDFPLVQEA 123 Query: 123 -QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 F++PQ T+K LI+ F+MA D+RYYLNG+LF EG+ L VATDGHRLA+ Sbjct: 124 ADFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTLVATDGHRLALAQ 183 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-------------LRVQIGSNNIRAHVG 228 + +P VI+PRK V+EL R+L + ++ N + G Sbjct: 184 ATLEAEIPKQEVILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQAKFSFG 243 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN 288 F +KLV+G+FPDY RV+P+N H+ G L + RAAIL++EKF+GVR+ Sbjct: 244 GMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRVNFEPG 303 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 L+I ++N EQEEA+E L++ Y G +EIGFNV+Y++DVL + + V + L D+ SS Sbjct: 304 TLRIASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANVNEDMVTLSLQDASSSAL 363 Query: 349 IEDAASQSAAYVVMPMRL 366 I YVVMPMR+ Sbjct: 364 ITVPERSGFKYVVMPMRI 381 >UniRef50_B1L1K7 DNA polymerase III, beta subunit n=35 Tax=Clostridium RepID=B1L1K7_CLOBM Length = 367 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 189/367 (51%), Gaps = 4/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T ++ LL+ + V + G+ TLPIL +L++ L LTG+D+++ + +V Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G + AR F +I R LP LE + + SRF+L + +FPN Sbjct: 60 NILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNSIEIICQNSRFNLIYMNPDEFPNPP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + F++ + +K +I+ T F+ A + R L G+LF+ + + L VA DG+RLA+ Sbjct: 120 IINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNLVALDGYRLALR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S + + ++P K + E+ ++L+ + + + N+I +G+ S+L++G Sbjct: 180 SEVVDNDNT-INAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISRLLEGE 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF-RGVRLYVSENQLKITANNPEQ 299 F Y+ ++P+ + + A L + RA++++ E V+ S +++ IT+N+ Sbjct: 239 FISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITSNSQ-L 297 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E L V G +++I FN Y+LDVL ++ + V + + SVS I++ + Y Sbjct: 298 GMVREELKVVLQGEDLQIAFNSKYLLDVLKTMEDDEVVLEFSSSVSPCIIKNTELNNCTY 357 Query: 360 VVMPMRL 366 +V+P+RL Sbjct: 358 LVLPVRL 364 >UniRef50_B9ZMT6 DNA polymerase III, beta subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMT6_9GAMM Length = 367 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 153/368 (41%), Positives = 223/368 (60%), Gaps = 3/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 M+ + +RE + LQ++ G R T+PILGN+ L+ + G + + TDLE+ A Sbjct: 1 MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQGE-AA 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 TV RK D+ + PE +EI ++GERM V SRFSL+TLP ADFP+ Sbjct: 60 GTIPGECDVTVSVRKLLDVVKAAPEDSEIRATIDGERMSVGFAGSRFSLATLPGADFPDW 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + SE +PQ ++RL+EAT FSMA QDVRYYL G+L G LR VATDGHRLA+ Sbjct: 120 ESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLRAVATDGHRLAL 179 Query: 180 CSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + Q++ IVPRK + EL R L D P+RV + + +G+ + SK+++ Sbjct: 180 AEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDLGNAVLRSKVIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GRFPDY RV+P + L + LKQA AR +I++++K+RGVR+ + + ++ +N + Sbjct: 240 GRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGDEGCQVMTHNAD 299 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +EEA+E ++ Y G MEIGFN+ Y++DVLNA++ + VR+ L D SS+ ++ A Sbjct: 300 REEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIETDQVRIGLRDGNSSILVQAEPPGGAR 359 Query: 359 YVVMPMRL 366 YVVMPMRL Sbjct: 360 YVVMPMRL 367 >UniRef50_D0LFL0 DNA polymerase III, beta subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL0_HALO1 Length = 365 Score = 347 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 110/368 (29%), Positives = 191/368 (51%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-LSLTGTDLEMEMVARVAL 59 M+F +++ LK L+ + T+P+L N+LL+ + L + TDL + + A + Sbjct: 1 MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G TV A+ FDI +PE + + + + G+ ++ L +P DFP + Sbjct: 61 KNSAE-GGLTVGAKALFDIVANMPEDDVVLRRTDNNWAEISCGKVKYRLVGMPDRDFPKV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + M+ +I+ T FS+ + + R++LNG+LFE++G R V+TDGHRL+ Sbjct: 120 PEHSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARMVSTDGHRLSK 179 Query: 180 CSMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + +I+P+KG+ E+ ++L+ G V + + I H I KL++ Sbjct: 180 VERTLEGAPALTAGIIIPKKGIGEIKKLLESG-GKAAVAVKTPYIFVHADSMILAVKLIE 238 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 +FP Y +V+PK + + L A RA ++S+E RGV+ VS + L IT++NP+ Sbjct: 239 SQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSSE-TRGVKFNVSPDSLVITSDNPD 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E E L+ Y G E+ IGFN YV+D+L+ + + V + L + + + + Sbjct: 298 IGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMATDQVTLELNGELDPGLLRPFSDDNYL 357 Query: 359 YVVMPMRL 366 VVMPMR+ Sbjct: 358 GVVMPMRI 365 >UniRef50_B0TAK9 DNA polymerase iii, beta subunit n=2 Tax=Heliobacteriaceae RepID=B0TAK9_HELMI Length = 371 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 176/370 (47%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ R LL+ + VS + + T P+L + L+ D L L TD+E+ + + V Sbjct: 1 MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+T V AR F ++ R LPEG + + VR S +L+T+ +FP L Sbjct: 60 RTKRTGSTVVNARIFNEMARRLPEGPITFCVNGDNPALKVRYHGSELTLNTMNPQEFPLL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + Q K++ F+ + + R + G+L++ + EE+R VATD HRLA+ Sbjct: 120 PAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRWVATDTHRLAL 179 Query: 180 CSMPIGQS--LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S + VI+ K + ++ R+L + PL++ + + +++ Sbjct: 180 LSGQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVILRII 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS--NEKFRGVRLYVSENQLKITAN 295 +G++P Y++V+P++ L L +A RA++ S E ++L N L I +N Sbjct: 240 EGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTIRSN 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +PE E + V G + I FN Y+ DVL L E VR+ L +++ + Sbjct: 300 SPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDTEQVRLDLFGTLAPGLLRPVGED 359 Query: 356 SAAYVVMPMR 365 Y+++P+R Sbjct: 360 HYLYLIVPVR 369 >UniRef50_B0CDM3 DNA polymerase III, beta subunit n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CDM3_ACAM1 Length = 372 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 171/372 (45%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L L +S + PT P+L N+LL L LT DL + + +A Sbjct: 1 MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA T+PAR DI LP I V+ + + + + + L A +FP L Sbjct: 60 DVEETGALTLPARFLNDIVSRLPNCD-IEVETDDTAVTLTCDSGHYQMQGLVAEEFPGLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 LP ++AT F+ + + + L G+ T TDGHRLA+ Sbjct: 119 SLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGLHLNTSESGFEFATTDGHRLAIA 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----GDFIFTSKL 236 + P + ++ +P K + EL RML + + ++ +N + G + +L Sbjct: 179 NFPDLVTPEPMTMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTERLSCRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKITA 294 ++G++P Y +++PK ++ + LL + R A+L+ K +RL + E + ++A Sbjct: 239 LEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQNVALSA 298 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 PE EE L SG +++I FNV Y+ D L AL + V++ + + + + Sbjct: 299 EAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQEVQLQMNSATMPAVLSPLSG 358 Query: 355 QSAAYVVMPMRL 366 + Y++MP+++ Sbjct: 359 RQITYLIMPIQI 370 >UniRef50_C0QRL0 DNA polymerase III, beta subunit n=3 Tax=Aquificales RepID=C0QRL0_PERMH Length = 364 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 186/367 (50%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +++ L L++ + LPIL N LL+ D L++ GTDLE+ + V Sbjct: 1 MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSV-FA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G V A+K DI R LP E+ ++LE + ++SG+++++L P+ DFP + Sbjct: 60 KIENEGTACVNAKKLTDISRLLPSN-EVYIKLEDSTLKIKSGKTKYNLPVAPSEDFPQMY 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + +++ I T ++ + ++ RY L G+LF + + VATDGHRLA+ Sbjct: 119 PFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGNIDVVATDGHRLALY 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ ++IVP+K + EL ++L G ++ + V ++I ++L++G Sbjct: 179 TIE-RTGKGDINIIVPQKALNELKKLLTGLED-VEVAATDQYAFFRTKEWILMTRLLEGV 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY +V+P + ++ ++ R + + + ++L + L++ + + E Sbjct: 237 FPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSVSVEYG 296 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS-AAY 359 EA + L V Y G E IGFN Y+++ + + + V + T+ + I A + Sbjct: 297 EAVDELSVDYEGEEYSIGFNAKYLIEAVEVIDGDEVVIKFTNPNAQTLIIPADQEDRYKA 356 Query: 360 VVMPMRL 366 +VMPM + Sbjct: 357 IVMPMEI 363 >UniRef50_UPI0001C311AE DNA polymerase III, beta subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311AE Length = 369 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 180/369 (48%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + RE LL LQ VS R + L + L A G + L TD+E+ + + Sbjct: 1 MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGLRVPLP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +PAR D+ R L A + ++ + + + +G ++F + TL A DFP Sbjct: 60 EIEREGSVVLPARLIVDVVRSLSGPTATLELRPAEQDVELVAGNAQFHIRTLRAEDFPPF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + +SE ++P + S + + R L G++ ELR VATD +RL+V Sbjct: 120 PEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRMVATDSYRLSV 179 Query: 180 CSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLV 237 + + L VP + + EL R++ D L V + N + +G+ + +S+L+ Sbjct: 180 KETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSSRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G+FP+YR++LP + + L + R ++L+ +K +RL + +L ++A P Sbjct: 240 EGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLA-QKNAPLRLSFAPGELTVSAQTP 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + EA E L V + G EIGFN ++ D L ++ +V + L + I+ A Sbjct: 299 DIGEARESLPVAFQGEPFEIGFNPDFLRDGLESVGSGDVMLKLISPLRPGLIQSAEDGGF 358 Query: 358 AYVVMPMRL 366 Y++MP+RL Sbjct: 359 LYLIMPIRL 367 >UniRef50_A7VRS4 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A7VRS4_9CLOT Length = 440 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 175/371 (47%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MK ++ L++ + V + + TL L +LL+ +G L L G DLE+ + + Sbjct: 68 MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELGITTVIE- 126 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 Q EPG + AR F DI R LP+ + E + G S FS+ +P++++P L Sbjct: 127 AQVDEPGEVVLSARLFGDIVRRLPDETVTILVDEKMITQITCGPSEFSIVGIPSSEYPEL 186 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + L +K +I T F++A D + G LF E +R V+ DG+RLA+ Sbjct: 187 PSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRLVSVDGYRLAM 246 Query: 180 CSMPIG---QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + I + +VP K + E++++L D + + +G +I + + S+L Sbjct: 247 RTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSVISRL 306 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITAN 295 ++G F DY+ +P + L + R ++L ++ VR SE+ + Sbjct: 307 LEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEIKISC 366 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +A + L +G E+EIGFN Y+LD L + V++ LT VS ++I Sbjct: 367 VTSIGKANDELSAQITGPEVEIGFNNRYLLDALRNADTDEVKVQLTGPVSPMKIVPTQGD 426 Query: 356 SAAYVVMPMRL 366 S ++V+P+RL Sbjct: 427 SFLFLVLPVRL 437 >UniRef50_A7C334 DNA polymerase III, beta chain n=1 Tax=Beggiatoa sp. PS RepID=A7C334_9GAMM Length = 375 Score = 343 bits (880), Expect = 8e-93, Method: Composition-based stats. Identities = 153/376 (40%), Positives = 227/376 (60%), Gaps = 11/376 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F + R+ LL PL+ ++G + R TLPIL N L+ V D TL T TD E+E+ + L Sbjct: 1 MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60 Query: 61 Q----PHEPGATTVPARKFFDICRGLPEGA----EIAVQLEGERMLVRSGRSRFSLSTLP 112 G TT+PARKFFDICR L + +++++ E + +V++G+S+F L TLP Sbjct: 61 SDNLGTDHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDETSQAIVKAGKSKFKLQTLP 120 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A DFP + + EF++ Q +K L+ T F +A DVRYYL G+L E ++ + T Sbjct: 121 ADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEISDGKISLIGT 180 Query: 173 DGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAH-VGDF 230 DGHR+AV + + VI+PRK V+EL ++L + + V N+I Sbjct: 181 DGHRMAVAQHDF-EGEENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKLSDSL 239 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 I SKL+DG FPD+ V+P +P+K + A LKQA RA+ILSNEK++G+R ++EN L Sbjct: 240 IMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLTENLL 299 Query: 291 KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 I+A N QEEAEEI++V Y+G E+E+GFN Y+LD +N + + V++ D SS I Sbjct: 300 TISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKTVQLAFVDQNSSCLIM 359 Query: 351 DAASQSAAYVVMPMRL 366 + ++ + ++VMPMRL Sbjct: 360 EEDNEDSKFIVMPMRL 375 >UniRef50_Q38ZS3 DNA-directed DNA polymerase III, beta subunit n=64 Tax=Lactobacillales RepID=Q38ZS3_LACSS Length = 379 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 187/377 (49%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ R +K L V + + T+PIL L L ++ L+LTG+D ++ + A ++ Sbjct: 1 MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60 Query: 61 Q------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 E G +PAR F +I + LPE + +RSG+S F+++ L A Sbjct: 61 DEKNQLVVEEVGEIVLPARFFSEIVKKLPEDQMRIAVGNNFQTTIRSGKSEFTINGLDAN 120 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 +P+L + + F++ +K+LI T ++++Q+ R L G+ E+ VATD Sbjct: 121 SYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGVHLVLANGEMLAVATDS 180 Query: 175 HRLAVCSMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA +P+ S ++ VI+P K ++EL R L + ++I N + G+ F Sbjct: 181 HRLAQRKLPVALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAGNLAFY 240 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSE--NQL 290 S+L++G +PD R++P + +E +L A RA++LS+E + VRL + N Sbjct: 241 SRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDTEANTA 300 Query: 291 KITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 I N+P+ EE L +G +EI FN Y+ D L + + + T ++ + Sbjct: 301 IIYGNSPDVGNVEEALQFENLTGESLEISFNPDYMKDALRSFGQTTIVINFTAALRPFTL 360 Query: 350 EDAAS-QSAAYVVMPMR 365 + + ++ P+R Sbjct: 361 VPSEDQEHYIQLITPVR 377 >UniRef50_C1F9N7 DNA polymerase III, beta subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9N7_ACIC5 Length = 373 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 200/374 (53%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +V R+ LL+ L + + T+PIL N L++ + L++T TDL+ M A Sbjct: 1 MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +PG+ T+PARK +D + LPEG ++ + +RSGRS + + A+FP + Sbjct: 60 KVKKPGSCTIPARKLYDYVKLLPEGDVSIKLMDNHWVQIRSGRSNTKMVGMARANFPQVP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ S +P A+++ LI T F++++++ RY LNG L + E + VATDGHRLA Sbjct: 120 EFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAESIAMVATDGHRLAHI 179 Query: 181 SMP---IGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKL 236 ++PRK + EL +L D + + + +G + TS+ Sbjct: 180 EKSGENFPSMGAEKKTLIPRKALSELQSLLGNTDAESVEFADDDSTLFFRIGHRVLTSRK 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 + G+FP+Y VLP++ +K + L ++ + ++E+ +++ + +N+LKI+A++ Sbjct: 240 LTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKISASS 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQIEDAA-- 353 + E+E++++ YS + +GFN +Y+LD L A+ VR+ D+ S+ Q+ Sbjct: 300 TDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGNTGEVRLEFKDAQSAGQMRPEDGQ 359 Query: 354 -SQSAAYVVMPMRL 366 Y++MPMR+ Sbjct: 360 EDYKYRYIIMPMRI 373 >UniRef50_P72856 DNA polymerase III subunit beta n=43 Tax=Cyanobacteria RepID=DPO3B_SYNY3 Length = 391 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 101/390 (25%), Positives = 168/390 (43%), Gaps = 25/390 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT--LSLTGTDLEMEMVARVA 58 MK + L L VS + RPT P+LGN+LL+ L LT DL + + + Sbjct: 1 MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL------EGERMLVRSGRSRFSLSTLP 112 + G T+PA+ DI LP+G + + S RF + L Sbjct: 61 -ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLD 119 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A DFP L + LP AT+ + F+ + + + L G+ + G+ L AT Sbjct: 120 ADDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGVHIKGSGDSLEFAAT 179 Query: 173 DGHRLAVCSMPIG------------QSLPSHSVIVPRKGVIELMRMLD--GGDNPLRVQI 218 DGHRLAV P L +V +P + + EL RM+ G + + + + Sbjct: 180 DGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLVV 239 Query: 219 GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF 278 + +GD TS+ ++G +P Y +++P+ + + L + R ++L+++K Sbjct: 240 NDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQKN 299 Query: 279 RGVRLYVS--ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENV 336 V + NQL++ + EE + G +I FN+ Y++D L AL ++ Sbjct: 300 NLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPSNDI 359 Query: 337 RMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +M L + V Y+VMP+RL Sbjct: 360 QMQLNEGNQPVIFTPLGGLKMTYLVMPVRL 389 >UniRef50_A5FYG4 DNA polymerase III, beta subunit n=2 Tax=cellular organisms RepID=A5FYG4_ACICJ Length = 374 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 130/376 (34%), Positives = 196/376 (52%), Gaps = 12/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +R LLK L V + R T+PIL N+LL V +G L++ TDLE+ ++ VA Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER--MLVRSGRSRFSLSTLPAADFPN 118 G+ T PA ++I R P+ AEI + G + +R+GR L LP +FP Sbjct: 60 TTMRDGSVTAPAATLYEIVRRQPDNAEIELDHPGGDAPLALRAGRYATKLVVLPTDEFPK 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE----LRTVATDG 174 LD + F +P ++ LI+ T+F+++ ++ RYYLNG+ E LR VATDG Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVPVLRAVATDG 179 Query: 175 HRLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA P+ + VIVPRK V E+ ++LD + + + I+ + T Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 SKL+DG +PDY +V+P DK L A AR + +++E+ + V+L V + L ++ Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299 Query: 294 ANNPEQEEAEEILDV---TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 A +P+Q A E LD Y +EIGF Y+ DV +K V D + + Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG-KVEFCFADGAAPTLVR 358 Query: 351 DAASQSAAYVVMPMRL 366 A +SA +V+MPMR+ Sbjct: 359 AAGDESAIFVLMPMRV 374 >UniRef50_D0MJZ8 DNA polymerase III, beta subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJZ8_RHOM4 Length = 379 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 9/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV LLK L V+G + + T+PIL +L + DG L L+ TDLE+ +V R+ + Sbjct: 1 MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60 Query: 61 QPHEPGA-----TTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + G VPAR+ + R LP+ E + + + + + + AD Sbjct: 61 LELQNGKEGARRVAVPARRLLETLRALPDLPVQFSADESFNVTLTTDQGHYKMVGFDGAD 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L + T+ A ++R I+ T F+++ +R + G+ F+ + EE R VATDGH Sbjct: 121 YPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRVVATDGH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL + S IVP K + ++ D +++ ++ +G S+ Sbjct: 181 RLVRLRLRELVSETPLEFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGPVRIISR 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D +P+Y V+P D+ L D A R + ++ VRL + + ++I A Sbjct: 241 LIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDHVEIAAE 300 Query: 296 NPEQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--- 351 + E+ EA E + Y G M IGFN Y+ +VL + + V + + + + Sbjct: 301 DIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDSDEVVLEFSSPNRAGVVMPHEQ 360 Query: 352 AASQSAAYVVMPMRL 366 A + ++MP+ L Sbjct: 361 AEGEDLLMLIMPVML 375 >UniRef50_B8CZN5 DNA polymerase III, beta subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZN5_HALOH Length = 367 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 178/368 (48%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 M+FT+ ++ + + V + + T+PIL + L+ D L + TDLE+ + V Sbjct: 1 MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVK- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEGERMLVRSGRSRFSLSTLPAADFPN 118 G +PA I R LP+ L+ + SRF + A +FP Sbjct: 60 ADIITEGKIVLPASHLSGIIRELPDDNINFKADLDKYEAELTCLSSRFKIKGFDADEFPQ 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L + + TL + RLI+ +FS + + L G + ++R VAT+ +RL+ Sbjct: 120 LPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVIDSGKIRMVATNTYRLS 179 Query: 179 VCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + S+ + S VI+P + EL +LD D + + IG N +R + + S+++ Sbjct: 180 LSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVSRVI 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G+FP+Y++VLPK + + + L ++ R ++++ + + V +N++ IT+ + Sbjct: 239 EGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITSQDS 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E+ A E +++ G E I + Y+LDVL L + V + L ++ + ++ S Sbjct: 299 EEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLNDDVVILELIGPLNPLTLKKENSDDF 358 Query: 358 AYVVMPMR 365 Y+VMP+R Sbjct: 359 IYLVMPVR 366 >UniRef50_B0K0W9 DNA polymerase III, beta subunit n=11 Tax=Thermoanaerobacterales RepID=B0K0W9_THEPX Length = 370 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 186/371 (50%), Gaps = 7/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ++ L + + + R TLPIL + + G + +GTDL++ + ++ V Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VPA+ F ++ R LPEG + V F+++ A +FP + Sbjct: 61 -IEEEGEIVVPAKIFSELVRKLPEGDVKIESDSQNTVNVVCDSINFTIAGSDAVEFPEIP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E F L Q +K LI T F +A + R L G+LFE E++ VA DG R+A+ Sbjct: 120 LVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVKAVALDGFRMAIY 179 Query: 181 SMP-----IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 S + + +S+++P K + E+ R+L + + + +N + + + S+ Sbjct: 180 SYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTKVISR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L++G F +Y VLPK+ + ++L ++ RA++++ K ++ + + + +++ Sbjct: 240 LLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFITVSS- 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 N E+ + E ++V G +EI FN Y+LD L A+ E + + +S++ + I+ S+ Sbjct: 299 NSEKGKMIEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEITLYFINSINPLIIKPIGSK 358 Query: 356 SAAYVVMPMRL 366 Y+++P++L Sbjct: 359 DYLYMILPVKL 369 >UniRef50_A3M0Q5 DNA polymerase III n=16 Tax=Acinetobacter RepID=A3M0Q5_ACIBT Length = 382 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 168/382 (43%), Positives = 229/382 (59%), Gaps = 16/382 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA AL Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 Q--PHEPGATTVPARKFFDICRGLPEGAEIAVQ-LEGERMLVRSGRSRFSLSTLPAADFP 117 + E G TTVPARK +IC+ LP A I +Q E +R +++SG SRF L TLPA D+P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120 Query: 118 NLD-DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 L + + + Q +KRL E T F+MA QDVR+YL G L E + +LR V TDGHR Sbjct: 121 LLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHR 180 Query: 177 LAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD------ 229 LA+C + + IVPRK V EL R+L D L + IG + + Sbjct: 181 LALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKE 240 Query: 230 -----FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 FT+KL+DG+FPDYRRV+P+ DKH+ G D+ KQ+ R AILSNEK RGV L Sbjct: 241 QGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLN 300 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344 +++ L++ ANNPEQ+EA E L + Y A +E+ FN Y+LDVL L ++V M +T++ Sbjct: 301 FNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDGDDVNMSMTEAN 360 Query: 345 SSVQIEDAASQSAAYVVMPMRL 366 SV ++D A YVVMPMR+ Sbjct: 361 QSVLVQDPAHPDQTYVVMPMRV 382 >UniRef50_P27903 DNA polymerase III subunit beta n=29 Tax=Actinomycetales RepID=DPO3B_STRCO Length = 376 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 164/378 (43%), Gaps = 16/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK VER+ L + + + L RP P+L LLL+ +G LSL+ D E+ V Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G V R DI R LP + + +G R V G SRF+L TLP ++P L Sbjct: 60 EIEEEGTVLVSGRLLADISRALPNRP-VEISTDGVRATVVCGSSRFTLHTLPVEEYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E T+P ++ + D L G+ E EG+ + +TD +R AV Sbjct: 119 QMP-EATGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTLASTDRYRFAVR 177 Query: 181 SMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRV----QIGSNNIRAHVGDFIFTS 234 P S +VP K + + + L GD + G I T+ Sbjct: 178 EFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGRRTTT 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L++G P Y+ + P + +A R A+++ E+ VRL + L + A Sbjct: 238 RLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVLILEA 296 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--- 351 + + +A E +D G ++ I FN +++LD L+A+ ++ T S + Sbjct: 297 GSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPVAQLSFTTSTKPALLSGRPA 356 Query: 352 ---AASQSAAYVVMPMRL 366 A ++ Y++MP+RL Sbjct: 357 VDAEADEAYKYLIMPVRL 374 >UniRef50_B7K0V0 DNA polymerase III, beta subunit n=13 Tax=Cyanobacteria RepID=B7K0V0_CYAP8 Length = 393 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 179/392 (45%), Gaps = 27/392 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD--GTLSLTGTDLEMEMVARVA 58 MKF + L L VS + RPT P+LGN+LL + G +SLT DL + + + Sbjct: 1 MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLLVADESKGRVSLTAFDLSLGIQTSFS 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAV------QLEGERMLVRSGRSRFSLSTLP 112 + + G +PA+ DI LPEG + + + + + ++S +F L + Sbjct: 61 -AEVSQGGTVALPAKLLNDIVSRLPEGEITLIADADESEDDSQIITLKSASGQFQLRAMS 119 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A +FP+L + L + + ++ + F+ + + + L G+ + L AT Sbjct: 120 AEEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGVHLAGTVDSLEFAAT 179 Query: 173 DGHRLAVCSMPI--------------GQSLPSHSVIVPRKGVIELMRMLDG--GDNPLRV 216 DGHRLAV + P+ SV +P + + EL RML G + + + Sbjct: 180 DGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTVAL 239 Query: 217 QIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE 276 + I +G+ TS+ +DG +P Y +++P+ + + + R A+L+++ Sbjct: 240 YVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLADQ 299 Query: 277 KFRGVRLYVSENQLK--ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 K V+ + ++ ++ + +A+E + +G ++ FNV Y++D L AL + Sbjct: 300 KNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALPSQ 359 Query: 335 NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +++ L + V + Y+VMP+++ Sbjct: 360 EIQIQLNEGNQPVILTPLGGLKMTYLVMPVQI 391 >UniRef50_Q1B045 DNA polymerase III, beta subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1B045_RUBXD Length = 375 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 168/372 (45%), Gaps = 9/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ L L VS + R + +L +LL+ +G L L+ TD+E+ + R Sbjct: 1 MRAVCNTGVLAGKLALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTRSP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G +PAR F DI R LPEG I +E ++RS + + + A DFP L Sbjct: 60 EVEEAGRLVIPARIFSDIVRSLPEGMISIEHDVESGAAVLRSRENEYRIRAYAAEDFPAL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ E F + + ++ S + + R L G+L E LR V TD +RL++ Sbjct: 120 PEFSEEGSFRVSGEALVETVQKVSSSYSRDETRPVLTGILISFEDSRLRMVTTDSYRLSI 179 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLV 237 + + I+P + + E+ R+ G D + VQ+ N VGD + +KL+ Sbjct: 180 KETELATTFEGKREAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGTKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR--GVRLYVSENQLKITAN 295 G FP+YRR+LP ++ + D + + R + + + V L SE +++ Sbjct: 240 AGNFPEYRRLLPAAFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEVVVR 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--AA 353 + E EA E + + + I FN Y+LD ++A+ E V + + I Sbjct: 300 SGEVGEAHERIPASSE-DDFTISFNPGYLLDGISAVDTEKVVFKFNEPLKPGLIVPNGEE 358 Query: 354 SQSAAYVVMPMR 365 Y++MPMR Sbjct: 359 EPDFRYLIMPMR 370 >UniRef50_Q1JZF2 DNA polymerase III, beta subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZF2_DESAC Length = 372 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 108/373 (28%), Positives = 211/373 (56%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD--GTLSLTGTDLEMEMVARVA 58 MK T ++ LLK L V G + + TLPIL N+LL+ L LT TDLE+ + + Sbjct: 1 MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + G T+ A+K ++I + L + E + + +G+++F++ L + +FP Sbjct: 61 -AEIISDGKITISAKKLYEIVKELADAEITLKVKENNWVEIINGKAKFNIVGLSSEEFPL 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE----GEELRTVATDG 174 + D Q++ ++ T+K +I+ T +++++ + ++ LNG+ +E ++ V+TDG Sbjct: 120 ITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVSTDG 179 Query: 175 HRLAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRL++ + L VI P+KG+ EL +++D + +++ I NN ++ + Sbjct: 180 HRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETTLV 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 +L+DG FPDY+RV+P+ D + + ++L R ++L+NEK +G+ + +N++ +T Sbjct: 240 MRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEINVT 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 ++NPE +A E + Y G ++IGFN Y++DV++ + +++R+ + D++S I Sbjct: 300 SSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISNVVDKDIRIYIKDNMSPCLILPED 359 Query: 354 SQSAAYVVMPMRL 366 + + V+MPMR+ Sbjct: 360 TNNYLAVIMPMRI 372 >UniRef50_B9KZ05 DNA polymerase III, beta subunit n=2 Tax=Thermomicrobia (class) RepID=B9KZ05_THERP Length = 380 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 106/376 (28%), Positives = 174/376 (46%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + L + L QVS + R TLP+L N+LL + L +T T+LE+ + Sbjct: 1 MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAV-QLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + +PG +V A F + LP+ I + V G S+ + +PA DFP+L Sbjct: 60 EVTDPGQLSVRADVFTEFIGSLPKQDVILSGTTGSNDLRVTCGTSKARIPGIPAEDFPSL 119 Query: 120 DDW-QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 T+P ++ I F+ A D R L G+L E G EL A DG RL+ Sbjct: 120 PRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTLAAADGFRLS 179 Query: 179 VCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQI--GSNNIRAHVGDFIFTSK 235 V S+ + Q ++IVP + + EL R+L G+ +++ + + + A G F S+ Sbjct: 180 VRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEFLSR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV-------SEN 288 L+DG FP++R+++PK + + A RA I + V+L++ Sbjct: 240 LIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSELDPG 299 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 L ++A + + E+IL G E I FN Y+ DVL+ K + + +T ++ Sbjct: 300 SLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKATEIALEMTTPNAAGV 359 Query: 349 IEDAASQSAAYVVMPM 364 +S +VVMPM Sbjct: 360 FRPVGDESFVHVVMPM 375 >UniRef50_C8WIM7 DNA polymerase III, beta subunit n=2 Tax=Coriobacteriaceae RepID=C8WIM7_EGGLE Length = 366 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 179/369 (48%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ + L L V + R TLPIL + L D TL+L TDLE+ + VA + Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VP + F +I + LP+ A + V E + ++ + FS+ TL A DFP Sbjct: 61 -IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAVITCDTASFSIKTLDAEDFPGFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E ++P +++ ++ + R L G+L E L+ VATD +RLA+ Sbjct: 119 HVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVLITLEDTTLKMVATDSYRLAIT 178 Query: 181 SMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + +S ++ + E+ L ++ L++ + N I D +F ++ ++G Sbjct: 179 EAELPESSAEEFQAVIAGSFLQEISS-LPRSEDDLKLALAENQIVVTYHDTVFINRRLEG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKITANNP 297 FP+YR++LP + + L R ++L + VR ++ ++++A Sbjct: 238 NFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFAINMASQTVQLSAVAQ 296 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + A+E L G ++EI FN +YVLD L+++ +NV + + S+ + ++ Sbjct: 297 DVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVSTDNVFLEVQSSMKPGIFKADEGENF 356 Query: 358 AYVVMPMRL 366 Y+VMP+R+ Sbjct: 357 LYLVMPVRI 365 >UniRef50_C7MLD3 DNA polymerase III, beta subunit n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLD3_CRYCD Length = 365 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 171/368 (46%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + +E L+ V+ R TLPIL + L+L T+L++ + + Sbjct: 1 MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G +P++ D+ + LPE A + V+ E + S FSL T DFP Sbjct: 60 FIEEEGEAVIPSKLLTDVVKSLPEAA-VHVETTTETASIMCESSSFSLKTFDPQDFPGFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + + P +T +++ ++ + R L G+L E LR VATD +RLAV Sbjct: 119 EVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVHDGMLRMVATDSYRLAVT 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + + ++ + +L L L + + N I F ++ ++G Sbjct: 179 DIDFTTPSEDFTAVISGSFMSDLAG-LSDTGESLTLALAENQIVVTYDGTTFINRRIEGN 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE--NQLKITANNPE 298 +P Y +++P+ + +L +A R ++LSN K VR V++ ++I+ + + Sbjct: 238 YPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQISTASQD 296 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 EA E L G + EI FN YV+D L++++ E+V++ L S+ + ++ Sbjct: 297 VGEAHETLGAKIQGEDEEIAFNFGYVIDGLSSIETESVQLELQGSMKPGILRATEQENFL 356 Query: 359 YVVMPMRL 366 Y++MP+RL Sbjct: 357 YLIMPVRL 364 >UniRef50_A4T4T7 DNA polymerase III, beta subunit n=20 Tax=Corynebacterineae RepID=A4T4T7_MYCGI Length = 398 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 29/389 (7%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF + RE + V+ L RPT+P+L +LL +D L+++G D E+ ++ + Sbjct: 13 KFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIP-AE 71 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 PG+ V R DI R LP + V +EG R+ + G +RFSL T+ D+P L Sbjct: 72 IASPGSVLVSGRLLSDIVRSLPAKP-VDVSVEGTRVSLTCGSARFSLPTMAVEDYPTLPT 130 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 E + I + D L G+ E GE++ ATD RLAV Sbjct: 131 LPDETGV-VSADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAATDRFRLAVRE 189 Query: 182 MPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIG-------SNNIRAHVGDFIF 232 + +VP K + E + G + + +G + Sbjct: 190 LTWSAGAAGVEAAVLVPAKTLAEAAKAGTDGTE-VHLALGQGPTVGKEGLLGIRSKGKRS 248 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 T++L+D FP +R++LP G L +A R A+++ ++ VR+ +++ L++ Sbjct: 249 TTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVA-DRGAQVRMEFADDVLRL 307 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A + AEE L V +SG + I FN SY+ D L +L E V T + A Sbjct: 308 SAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHAERVTFGFTTPSRPAVLRPA 367 Query: 353 ASQ---------------SAAYVVMPMRL 366 Y++MP+RL Sbjct: 368 GDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396 Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 13/179 (7%) Query: 124 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMP 183 S+++F L + + ++ + L G+L E L D + ++ Sbjct: 10 SDLKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFD-YEVSAEVQI 68 Query: 184 IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD-GRFP 242 + SV+V + + +++R L P+ V + + G F+ + +P Sbjct: 69 PAEIASPGSVLVSGRLLSDIVRSLPA--KPVDVSVEGTRVSLTCGSARFSLPTMAVEDYP 126 Query: 243 DYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF-----RGVRLYVSENQLKITANN 296 LP PD+ DL +A + A+ + G+R+ +S ++ + A + Sbjct: 127 ----TLPTLPDETGVVSADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAATD 181 >UniRef50_C8N933 DNA polymerase III, beta subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N933_9GAMM Length = 371 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 209/371 (56%), Gaps = 5/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MKF++ +E L+PL +SG + + T PIL + LLQ AD +L L GTD E+ + + Sbjct: 1 MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLKGTDTEVTLQILLHE 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + GA TVPA K D+ R LP A I LE E++LV++ S F ++TLPA DFP L Sbjct: 61 LNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKEQLLVKAAGSLFRIATLPAEDFPAL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRL 177 + E + +++ +FSMA +DVRYYLNGM +G + V+TDGHRL Sbjct: 121 AEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVSTDGHRL 180 Query: 178 AVCSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + P+ ++IVP+KGV EL+++L P+ + +G + +G + TS+L Sbjct: 181 SCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYRLTSQL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +DG FP+Y +VLP+ + + ++ RA +L ++ G+RL E L++ A N Sbjct: 241 IDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQLAARN 300 Query: 297 PEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 E E A+E L+ + ++E+ N++Y++D + + +NV++ + D S I + + Sbjct: 301 LENETADETLEIINPQNLQLEVALNINYLIDAIATISGDNVQLHIADGSSPCLITSSDDE 360 Query: 356 SAAYVVMPMRL 366 YV+MPMRL Sbjct: 361 GVRYVIMPMRL 371 >UniRef50_B8FM62 DNA polymerase III, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM62_DESAA Length = 376 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 178/378 (47%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F++ +E L + +V G G + T PI N+L+ T++L TDLE+ Sbjct: 1 MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G T+P +K F+I R P GA LE + + + ++ + + DFP L Sbjct: 60 TVEEEGTITIPGKKLFEIVREFPHGAIDVRDLENGWVQIFKDKVQYKIVGMDPNDFPKLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFS--MAHQDVRYYLNGMLFET----EGEELRTVATDG 174 + + F L +IE T S M+ ++ R +L G+ E E LR V+TDG Sbjct: 120 EVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVSTDG 179 Query: 175 HRLAVCSMPIGQSLPS------HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG 228 +RLA + + VI+P+K + E++R+ G + + + N Sbjct: 180 NRLARVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRV-SEGGGKISLGVQKNYFVIQKE 238 Query: 229 DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN 288 +LV+G +PDY V+P + + E R +IL +E++R VR V Sbjct: 239 AETIIGRLVEGEYPDYNLVIPNDLETFFEIEKQPFVSILKRMSILCSERYRAVRFKVDPQ 298 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 +L+++ NNPE ++ E + + ++G E FN + +D LN +K + +++ + DS Sbjct: 299 RLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKSDMIKVNILDSSKPCI 358 Query: 349 IEDAASQSAAYVVMPMRL 366 +E + V+MPMR+ Sbjct: 359 LEGSEDPRYLSVIMPMRM 376 >UniRef50_Q67TK6 DNA polymerase III beta subunit n=1 Tax=Symbiobacterium thermophilum RepID=Q67TK6_SYMTH Length = 368 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 186/368 (50%), Gaps = 7/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E L L V+ + + T+P+L + L G L++ TD+E+ + A Sbjct: 1 MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEAVTP-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G T +PAR F D+ R +P E++V +R GRS++ + A FP L Sbjct: 60 EVISEGETVLPARYFADLIRRIPYGNIELSVDYHNHVATLRWGRSQYVIHGFAADQFPTL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D FT+ Q+ ++ L+ T F+ H + + +L G+LF+ + L ATDG R+A Sbjct: 120 PDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKLRDDLLTGTATDGIRIAY 179 Query: 180 CSMPIGQSLP-SHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + S SVI+P + + E+ R+L D+ + V + +N + +G+ S+L+ Sbjct: 180 AEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVISRLL 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G++PD R++P++ +A RA +++ + V++ +++ IT+N P Sbjct: 240 EGQYPDVMRLVPQHYPTEAVLPGAEFMEALERATLITKDG--AVKISFQTDKVTITSNTP 297 Query: 298 EQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E + E L VT +G ++IGFN Y+LD L L+ + R + S + ++ A S Sbjct: 298 EVGQVYEELAVTSMAGDPLDIGFNARYLLDFLKVLEEKQFRFQCSGSRNPARLMPADSSQ 357 Query: 357 AAYVVMPM 364 YVV+P+ Sbjct: 358 FLYVVLPL 365 >UniRef50_C8WXS8 DNA polymerase III, beta subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXS8_ALIAD Length = 374 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 184/371 (49%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+++++ L LQ VS + R +L +L++V + + T DLE+ + RV + Sbjct: 1 MEFSLQKQALSNALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60 Query: 61 Q-----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + H+ GA +PAR F DI R LP+ + + F L + A + Sbjct: 61 EETGLRVHQTGAIVLPARYFGDIVRKLPDTEIHMRVDANYMTEISAQSVEFHLHGIDAEE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 FP L ++ +P +T+ RLIE+T F+ A +VR L G+ ++ L +ATDG Sbjct: 121 FPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGVSITSDPTHLTFIATDGL 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA +P LP V++P K + EL ++L + + + + ++ +G F ++ Sbjct: 181 RLAQHRVP-QADLPERQVVIPAKSLSELSKILPEDETSVEMVLTPSHGLFVIGPTRFYTR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITA 294 L++G +PD R++P++ + D A RAA+++ +K VRL V+ + L +T+ Sbjct: 240 LLEGTYPDTSRLIPRSARTQVVLDGDAFLHAIDRAALIARDKDNHMVRLEVTGDTLTVTS 299 Query: 295 NNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 ++PE E L G +++I FN YV++ + AL + + + + IE + Sbjct: 300 HSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAAEIAIRFNGANQAFVIERSG 359 Query: 354 SQSAAYVVMPM 364 S ++ P+ Sbjct: 360 DPSMLQLISPI 370 >UniRef50_Q5GSK7 DNA polymerase III beta clamp subunit n=11 Tax=cellular organisms RepID=Q5GSK7_WOLTR Length = 393 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 199/367 (54%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F + R LL L +VSG + R + IL + ++ G++ L TDL++ + A +A Sbjct: 29 MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLA-A 87 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 G V A DI + LP ++ ++ + ++L+ G + FSL + P L Sbjct: 88 DVLTEGEVKVSAHTLHDIVKKLPADLDVNFEVNDQGKLLISYGNANFSLPNVVLNKLPVL 147 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + +FTL + L+ T+F+++ D RY LNG+ T+ + L VATDGHRL+ Sbjct: 148 EEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQFLYCVATDGHRLSC 207 Query: 180 CSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P Q+ VI+PRK VIEL+++LD D + +++ I+ G +I SKL+D Sbjct: 208 VKKPKPQNINSEFGVIIPRKTVIELLKVLDDCDE-INIKLSDRKIKFTCGKYIIISKLID 266 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FPDY+ V+P + DK + L R +++ +++ + + + E L + +N+ E Sbjct: 267 GAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSNSQE 326 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +A E ++V Y+GA +EIGFN Y+LD L+ +K + L+DS S+ I D + Sbjct: 327 CSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIKS-KCKFSLSDSSSATVITDENDPNVL 385 Query: 359 YVVMPMR 365 Y+VMP+R Sbjct: 386 YIVMPVR 392 >UniRef50_B5EJ65 DNA polymerase III, beta subunit n=3 Tax=Acidithiobacillus RepID=B5EJ65_ACIF5 Length = 365 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 204/368 (55%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T++RE LL L ++ RP PIL ++L++ A TDLE+++ A + Sbjct: 1 MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSADLDHP 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 PG VPARK +DICR LPE I +GE++L+++ +SRF+L LPA FP L Sbjct: 61 -VDAPGTCAVPARKLYDICRALPEHTPIEFHKDGEKLLLKAAKSRFTLHILPADQFPYLS 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 S + T + + +MA D R +LNG+L E EG+ELR VATDGHRLA+ Sbjct: 120 THSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRLVATDGHRLAMM 179 Query: 181 SMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 ++P SL S S I+PRK V+EL+R+LD GD + +++ + + G F KL+D Sbjct: 180 TLPFASSLESGSYQAILPRKAVLELLRILDDGD--IVLEMSDASFLLNDGTQQFACKLID 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 ++PDYRRV+P+ + K A ++ +L +++ L++ +Q+ + + N E Sbjct: 238 AKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRSRNEE 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 QEE E + V Y G ++I FN Y+ D E++RM + DS SS S + Sbjct: 298 QEEGEIQIPVEYQGDTLDIAFNSRYLTDTTQIFPQESLRMRVKDSDSSAVFTPVDSNNPL 357 Query: 359 YVVMPMRL 366 Y++MP+RL Sbjct: 358 YIIMPVRL 365 >UniRef50_B4VWR6 DNA polymerase III, beta subunit n=5 Tax=Cyanobacteria RepID=B4VWR6_9CYAN Length = 400 Score = 332 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 170/399 (42%), Gaps = 34/399 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 MK T + L L V+ + RPT P+LGN+LL+ + +SLT DL + + Sbjct: 1 MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLKADAENQRVSLTAFDLSLGLQTSF- 59 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQ----------LEGERMLVRSGRSRFSL 108 GA +PA+ F DI LPEG E + + S ++ + Sbjct: 60 NANVEADGAIAIPAKLFNDIVSRLPEGDITLEDSLSEAESDADTESLSITLTSTSGQYKM 119 Query: 109 STLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR 168 + + DFP L + + LP + + + F+ + + + L G+ + + L Sbjct: 120 RGMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSLE 179 Query: 169 TVATDGHRLAVCSM-----------------PIGQSLPSHSVIVPRKGVIELMRM--LDG 209 ATDGHRLAV ++ S + VP + + EL RM L Sbjct: 180 FAATDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGLSE 239 Query: 210 GDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFAR 269 + + +Q I G+ TS+ ++G++P YR+++P + + L A R Sbjct: 240 SSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAVER 299 Query: 270 AAILSNEKFRGVRLYVSENQLKI--TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 A+L+++K V+ + I T + A E L +G +EI FNV Y++D Sbjct: 300 IAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLIDG 359 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L AL +++ + + + V + Y++MP+++ Sbjct: 360 LKALSTSDIQFQMNAANTPVILTPLGGLKMTYLIMPVQI 398 >UniRef50_Q3Z759 DNA polymerase III, beta subunit n=5 Tax=Dehalococcoides RepID=Q3Z759_DEHE1 Length = 378 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 173/375 (46%), Gaps = 12/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T +E+L K L V GR TLPI N+L+ DG L L T+LEM + + Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWI-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+TTVPA+ + LP + + + + + ++ R ++ + A DFP + Sbjct: 60 KIEEEGSTTVPAKLLTEFVSSLPNDKIELNLNAKSKALNIKCARFEARITGVDAKDFPPV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + ++ + F+ A + R L G+ E EG L A DG RLAV Sbjct: 120 PKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAADGFRLAV 179 Query: 180 CSMP-IGQSLPSHSVIVPRKGVIELMRMLDGGDNP---LRVQIGSNNIRAHVGDFIFTSK 235 +P + + VI+P + + EL R+ + + V + I + + S+ Sbjct: 180 YKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIELVSQ 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV------SENQ 289 LV G FP Y +++P++ + + A A I + + VRL + + + Sbjct: 240 LVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNTPGK 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L I+A + E + LD G E +I FN Y+LDVL LK + V + +T S I Sbjct: 300 LTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKAQQVSLEVTSPSSPGVI 359 Query: 350 EDAASQSAAYVVMPM 364 + + + +V+MPM Sbjct: 360 KPVGADNYIHVIMPM 374 >UniRef50_B2A2Y7 DNA polymerase III, beta subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2Y7_NATTJ Length = 370 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 185/370 (50%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MK +++ L + LQ + + T+P L +Q +D TLS+ DLEM + ++ Sbjct: 1 MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLST 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + E G+ VP + FFDI + LPE V E + + SG+ + + L ++P Sbjct: 61 -EILEQGSVVVPTK-FFDIIKKLPEDQITFSVDQENYLITIESGQVYYEIKGLDPEEYPK 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE-GEELRTVATDGHRL 177 L + + F++P+ +K++I T F+++ ++ + G+L + + +L VATD +RL Sbjct: 119 LPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKFDSDNKLDMVATDSYRL 178 Query: 178 AVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A I S I+P+K + ++ R++ D + + + + SKL Sbjct: 179 AWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLFSKL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITAN 295 +D FP+ +V+PKN + L+ + RA++L++E V+L +SE ++IT+N Sbjct: 239 IDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEITSN 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +P + +E L + G + I N ++++VL ++ + V + T S S + I + Sbjct: 299 SPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIEEDQVELEFTGSYSPMIIRPREND 358 Query: 356 SAAYVVMPMR 365 ++++P+R Sbjct: 359 QYFHLILPVR 368 >UniRef50_B4UTW9 p081 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW9_BP163 Length = 378 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 199/369 (53%), Gaps = 15/369 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + R L + L VS + R T+PIL +L L ADG L++TGTDL++ + A Sbjct: 21 MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDI-VATDTAAA 79 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E GA V A+ DI + G ++++ + +++V+SGRSRFSL LPAADFP+L Sbjct: 80 DVTEGGAVCVDAKLLSDIAKK--TGGDVSLSEDKGQLIVKSGRSRFSLPALPAADFPDLS 137 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE---LRTVATDGHRL 177 + F + + L F+++ ++ R+YLNG+ + +R VATDGHRL Sbjct: 138 GGEYTASFDMD---LAALFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGHRL 194 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + VIVPRK V L + +RV + IR G+F+ TSKL+ Sbjct: 195 SRHQAAYPGEDAFKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTSKLI 248 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY+RV+P DK + G D ++QA +R +++S+E+ R V+L +E + K+ ++P Sbjct: 249 DGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAVSSP 308 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E A + + V Y G ++IGFN +Y+ +++ ++ + L D S + Sbjct: 309 ETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPAGDITLALADGGSPSVFTSEKAPEL 368 Query: 358 AYVVMPMRL 366 V+MPMR+ Sbjct: 369 LAVLMPMRV 377 >UniRef50_B0S417 DNA polymerase III beta subunit n=2 Tax=Finegoldia magna RepID=B0S417_FINM2 Length = 367 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 187/367 (50%), Gaps = 7/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ LLK + + R T+ IL +L + L L TDLE+ +V A Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLEL-IVDTRANC 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +E G + + +I R LP+ A+I ++++ + ++ + F++ + +FP+L Sbjct: 60 EIYEKGQIVINSSMIGNIIRKLPD-ADIYIEVDDNNINIKCLSTEFNIQGQDSNEFPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +V+ TL Q+ ++ I T F+ + R L G+LF + + VA DG+R+++ Sbjct: 119 YIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEFVALDGYRVSLD 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S IVP + + E+ ++L+ + + + I + NI + + S+L+DG+ Sbjct: 179 CLS-NVSEFEMKAIVPARALNEVYKILE--EGEITLNIITGNIIFKLENTDVYSRLIDGQ 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKITANNPEQ 299 + DY +V+ ++ + L+ A RA++++ +K V+L S N+L I++ N + Sbjct: 236 YIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS-NTDI 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + +E + G ++ I FN Y+LD L + +++ + ++ S+ + + + Y Sbjct: 295 GKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVIDDDDITLNMSGSLRPMVFKPLNDTNYTY 354 Query: 360 VVMPMRL 366 +V+P++L Sbjct: 355 LVLPVKL 361 >UniRef50_A6G5S7 DNA polymerase III, beta subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5S7_9DELT Length = 372 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 179/373 (47%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 M+F +++ L L S R T+P+L N+LL+ D L TD+ + + +V Sbjct: 1 MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVP- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + PG+ T+ R + R LP GA L+ + + RS F L +P DFP L Sbjct: 60 CKVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDNSWAQILAKRSEFKLMGMPEGDFPEL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D E T+P + LIE T FS++ + R LNG + E++G+ V+TDGHRL Sbjct: 120 PDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLESDGQTATMVSTDGHRLTK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ + +IVPRKG+ E+ ++L+ + + + + + + KL + Sbjct: 180 FSLELEGLALPREIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSVKLNNV 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FP +++V+PK+ + L A +AA+++ EK V++ + + L++ A+NPE Sbjct: 240 TFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNADNPEL 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ---- 355 L V Y G+ + GFN +Y+++ L AL + + + + + A Sbjct: 300 GAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLDFQGELDPCVLRPAPDDEGND 359 Query: 356 --SAAYVVMPMRL 366 VVMPMR+ Sbjct: 360 PVDFLAVVMPMRI 372 >UniRef50_C0GI72 DNA polymerase III, beta subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI72_9FIRM Length = 367 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 169/370 (45%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV + L + LQ + + T+P+L +L Q T++LT T+LE+ + + Sbjct: 1 MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGIRTSFPVP 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-VRSGRSRFSLSTLPAADFPNL 119 E G +PA+ +I R LP E + ++SG+S F L L ++P Sbjct: 61 D-QEKGEVVLPAKAV-EIIRKLPGDTVSLTVNEENFLTEIKSGQSEFQLYGLSTEEYPAF 118 Query: 120 DDWQ---SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 D + + +R + T F+ + + + G++F + L ++D R Sbjct: 119 ADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLSSSDTFR 178 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 LA S + +VP K + E++R+L ++ +++ + N + + +S+L Sbjct: 179 LATTSCRVQNQGADGVFLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIKLSSRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 +D FP+ RV+P+ A RA++LS VRL + E L I A++ Sbjct: 239 LDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLVIRASS 298 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + +E + V SG +EI N ++LD+L + + + LT++ + D+ Q Sbjct: 299 K-FGKTQEHVPVELSGEGLEISLNSRFILDMLKVHEGDQCILELTNANKPCILRDSLYQE 357 Query: 357 AAYVVMPMRL 366 Y+V+P+++ Sbjct: 358 YLYLVLPIKI 367 >UniRef50_C4V1P5 DNA polymerase III beta chain n=2 Tax=Selenomonas RepID=C4V1P5_9FIRM Length = 380 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 179/379 (47%), Gaps = 15/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T+ + L+ LQ VS L +P PIL + + +G L L T+ E+ + + Sbjct: 1 MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G +P + + R LP I + + SG +RF+L T+ DFP L Sbjct: 60 EIRSTGTAVLPGKYLTEFARKLPAEEVSINTESSDGLAEICSGTARFTLRTMEVTDFPVL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVR---YYLNGMLFETEGEELRTVATDGHR 176 + FT+ + RL++ + F+ ++ R G E +G ++ AT+ HR Sbjct: 120 HRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVDGHKVTFAATNVHR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 LAV S + +I+P + + E+ R + + + + N I + TS+ Sbjct: 180 LAVKSESLETEAGQICIIIPARFLEEVTRTMTSDVPSDVNISCTYNQISISFDNIYMTSR 239 Query: 236 LVDGRFPDYRRVLPKNPD--KHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKI 292 L++G FPDYRRV+P++ + + A RA++++ +++ V+L ++ ++I Sbjct: 240 LIEGTFPDYRRVIPQDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFADGTMRI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV------SS 346 ++N+PE EAEE + G ++ I FN SY++D + +L + + L S S Sbjct: 300 SSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCILSLQGSNEQGVNLSP 359 Query: 347 VQIEDAASQSAAYVVMPMR 365 + I + A + YVV P+R Sbjct: 360 ITIREEADPNYIYVVTPVR 378 >UniRef50_B8HRT6 DNA polymerase III, beta subunit n=2 Tax=Chroococcales RepID=B8HRT6_CYAP4 Length = 374 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 175/374 (46%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + L L +S + +PT P+ N+LL+ L L+ DL + M + Sbjct: 1 MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q PG+ T+PAR F DI LP I + +E + + G + + L A +F L Sbjct: 60 QTEVPGSFTLPARFFNDIVSRLPNAP-ITIAVESPTVTLACGAGHYQMQGLEAEEFTALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D LP + + ++AT F+ + + + L G+ + + L ATDGHRLAV Sbjct: 119 DLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEFAATDGHRLAVA 178 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV----GDFIFTS 234 + P SV VP K + EL RML L ++ + G +S Sbjct: 179 YGQPEEFSPDTPLSVTVPAKALRELERMLGRTPVALTLRCDQTQVVFEFATEQGMARLSS 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS--ENQLKI 292 +L++G +P+Y+++LP+ ++ + R A+L+ +K V++ + QL + Sbjct: 239 RLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQQLDV 298 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A P+ EE L SG ++E+ FNV Y++D L A+ V++ + + + V + Sbjct: 299 SAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTASEVQIQMNAATAPVILSPL 358 Query: 353 ASQSAAYVVMPMRL 366 + Y++MP++L Sbjct: 359 SGTKMTYLIMPIQL 372 >UniRef50_C9XIB4 DNA polymerase III, beta chain n=6 Tax=Clostridium RepID=C9XIB4_CLODC Length = 402 Score = 330 bits (846), Expect = 7e-89, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 179/366 (48%), Gaps = 4/366 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 K ++ L + + G+ T+ +L +L+ +G L LTG D E+ + V + Sbjct: 36 KIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQ-AE 94 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 E G V AR F DI R LP+ + + SRF + A +FP L + Sbjct: 95 IIEKGDVVVDARLFGDIIRKLPDSFVEIETDSENNIYINCVNSRFKIKGYAAKEFPKLPE 154 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 E +++PQ +K +I+ T F+++ + L G L E L VA DG+RLAV S Sbjct: 155 LNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNLVAIDGYRLAVKS 214 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRF 241 + + VI+P K +I++ +L G DN ++V N + D ++L++G F Sbjct: 215 CSVDSLTENIKVIIPGKTLIDVNSLLSGEDN-VKVGFNEKNAIFIINDTKIITRLLEGDF 273 Query: 242 PDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQE 300 DY+++LP+ + ++ L + RA++LS +EK ++L + + + IT+ N E+ Sbjct: 274 IDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITS-NTEKG 332 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 E +++ G ++I FN Y ++ L + E + + T +V+ I+ + Y+ Sbjct: 333 NVYEEVEIDLDGDYLDIAFNSRYFIEGLKNIDNEEIFIEFTTNVNPCIIKPTDDVNYIYL 392 Query: 361 VMPMRL 366 ++P+R+ Sbjct: 393 LLPVRI 398 >UniRef50_Q3A8P3 DNA polymerase III, beta subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8P3_CARHZ Length = 371 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 174/372 (46%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVA 58 MKFT L + + + + P+L +L + + T++LT TDL+M + Sbjct: 1 MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 + E G+ + ++ DI + LPE + L + +++ G S S++T +FP Sbjct: 61 -AKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNEGKCVIKYGASEVSVATYRPEEFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 ++ F + I+ F+ + R G+LFE G+ELR VA+D HRL Sbjct: 120 KNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRLVASDTHRL 179 Query: 178 AVCS--MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 A + + + +VI+P + + E +R+ D L ++I + TS+ Sbjct: 180 AFRKTFIKREDTGKNINVIIPSRTLHEAVRIFGTVDELL-IKISEGQVEFSGNGIKLTSR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR--GVRLYVSENQLKIT 293 L++G+FP+Y++V+P ++ + RAA+L +K + + Y+ + IT Sbjct: 239 LIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENMIIT 298 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + + E E L ++ G E + FN Y++DVL L+ E + + LT ++ ++ Sbjct: 299 SQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLETEEIYLSLTGPLNPGVVKPVN 357 Query: 354 SQSAAYVVMPMR 365 ++ +V+P+R Sbjct: 358 DENYLCLVLPVR 369 >UniRef50_B1GZ05 DNA polymerase III beta subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZ05_UNCTG Length = 373 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 189/374 (50%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK E+E L++ +Q VS + TLP L N+L + + L+ TDLE+ + + Sbjct: 1 MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIKG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 + E G T+P+++F +I + L EI ++ + ++ ++SG+S+F+L + ++P + Sbjct: 60 EITEDGGITIPSKRFANIIKELSTDDEIEIKADETNQINIKSGKSKFNLMGISKTEYPVI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + FT+ + +++ F+ + RY LNG+ F +L VATDG RLA Sbjct: 120 PEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFILGDSKLTMVATDGRRLAY 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I Q+ IVP K V +++R+L D +R+ I N I A + D S L+ Sbjct: 180 AKTNITQAEVKGKAIVPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLLSTLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAI-----LSNEKFRGVRLYVSENQLKI 292 +G FP+Y +V+PK D ++ A + A+ LS+++ V+ Y S++ LKI Sbjct: 240 EGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQDLLKI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 +A++ E L++ Y EI FN ++ ++ ++ + T+S++ I Sbjct: 300 SASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSIDEYSAIFEFTNSLNPAVIYPE 359 Query: 353 ASQSAAYVVMPMRL 366 ++ VVMPMR+ Sbjct: 360 TDENYLCVVMPMRV 373 >UniRef50_Q2JU25 DNA polymerase III, beta subunit n=2 Tax=Synechococcus RepID=Q2JU25_SYNJA Length = 454 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 93/402 (23%), Positives = 177/402 (44%), Gaps = 39/402 (9%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVALV 60 FT E+ L L VS + RP LP+L N+L++ ++LT DL + + + Sbjct: 51 FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFE-A 109 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G TT+PA+ DI LP G ++ E + + S ++ L +PA ++P L Sbjct: 110 EVKGSGRTTLPAKLLSDIVSRLPSGPIGLSQVPESAAVTLTSAAGQYQLRGMPAEEYPTL 169 Query: 120 DDWQSEVE-------------FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET---E 163 + LP ++ + I T F+ + D + L G+ + + Sbjct: 170 PEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTGD 229 Query: 164 GEELRTVATDGHRLAVCSMPIG-------QSLPSHSVIVPRKGVIELMRMLDG--GDNPL 214 L ATDGHRLA+ + +P + + E+ R+L + + Sbjct: 230 PPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKLDFTIPARTLREVERILGAQTAASAV 289 Query: 215 RVQIGSNNIRAHVG--------DFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQA 266 ++ + ++ + TS+L++G++PDY R++P+ ++H+ L ++ Sbjct: 290 ELRFDRSQVQFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPLIES 349 Query: 267 FARAAILSNEKFRGVRLYVSE--NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYV 324 R + + ++ ++ +SE L+I+ P+ EE L V SG ++E+ FNV Y+ Sbjct: 350 LERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNVRYL 409 Query: 325 LDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L+ L + V + L + + + Y+VMP++L Sbjct: 410 LEALKVFHTQQVSLELNGATQPAIWKPIGATRLCYLVMPVQL 451 >UniRef50_A5FGC6 DNA polymerase III, beta subunit n=12 Tax=Bacteroidetes RepID=A5FGC6_FLAJ1 Length = 372 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 180/371 (48%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V +LLK LQ + + TLPIL N L ++ + L+++ +DLE M A +++ Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLSI- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ VPA+ +I + PE + + + S +++L+ +FP Sbjct: 60 DSTSKGSVAVPAKLLLEILKTFPEQPLTFTVEDNNTVEISSNSGKYALAYAAGEEFPKSV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + +P + + T F+ + D+R ++G+ F+ E L VATD H+L Sbjct: 120 NLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTFVATDAHKLVKY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + ++ I+P+K + L +L D ++++ +N ++I +L+DG+ Sbjct: 180 ARADVKASQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMCRLIDGK 239 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ- 299 +P+Y V+PK L L + R AI SN+ +RL ++ +L ++A + + Sbjct: 240 YPNYEAVIPKENPNKLLIDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSAEDIDYS 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED----AASQ 355 +AEE L Y G +++IGFN +++++L L+ + + + ++ + + + Sbjct: 300 NKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIMLEMSLPNRAGILTPADGLEEGE 359 Query: 356 SAAYVVMPMRL 366 + +VMP+ L Sbjct: 360 TVTMLVMPVML 370 >UniRef50_D1PRN1 DNA polymerase III, beta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN1_9FIRM Length = 369 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 180/367 (49%), Gaps = 3/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF E+ L ++ VS + R +P+L + L+ L+LTG D+EM + + Sbjct: 1 MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIE-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 PG T + A+ + +P G + + ++ G + F + L A+D+P+L Sbjct: 60 NVLVPGETVLEAKLLLSMVSRMPAGDVRIELTDEGQAIISGGVAEFEIPALNASDYPSLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ T+P + M+ LIE T ++++ D + G LF E L VA DG+RLA+ Sbjct: 120 VTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVIEPGSLTIVALDGYRLAII 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + + +I+P K + EL++++ G D+P+++ + + S+L++G Sbjct: 180 QRDV-ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMSRLIEGD 238 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPEQ 299 F +Y V+PK+ + C RA+++ E+ +R+ +E+++ + P Sbjct: 239 FLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVRCQTPLG 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + +E V +G +EIGFN Y+LD + KCE + + + +S V+I + Y Sbjct: 299 KVVDEFPPVAMTGDPVEIGFNNRYLLDAMRYSKCERMVLEINGPLSPVKILPEDGKDFIY 358 Query: 360 VVMPMRL 366 +V+P+R Sbjct: 359 LVLPVRF 365 >UniRef50_Q2S6M1 DNA polymerase III, beta subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S6M1_SALRD Length = 377 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 182/375 (48%), Gaps = 11/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT LL+ L V G + + T+PIL +L + TL L+ TDLE+ ++ V V Sbjct: 1 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVP-V 59 Query: 61 QPHEPGA-----TTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 Q + G VPA++ D R LP+ + + + + + + +D Sbjct: 60 QFEKNGTPESTPIAVPAQRLIDTLRALPDLPIEFAADSDFEIRMDTDQGHYKMVGHDGSD 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L + + + E + + R I+ T F+++ +R + G+ F+ EE VATDGH Sbjct: 120 YPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSVVATDGH 179 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL ++P ++ S IVP K R+++ D V++ +++ G+ ++ Sbjct: 180 RLVKLTLPELRADTSADFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGESRVLAR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D +P+Y+ V+P D++L + + A R + S+ +RL ++ + + I+A Sbjct: 239 LIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTVTISAE 298 Query: 296 NPE-QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--- 351 + E EAEE + Y MEIGFN Y+ +VL+ ++C+ V L+ + + Sbjct: 299 DVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVECDEVVFELSSPNRAGIVLPREG 358 Query: 352 AASQSAAYVVMPMRL 366 A + ++MP+ L Sbjct: 359 ADDEDILMLIMPVML 373 >UniRef50_A0Q3U8 DNA polymerase III, beta subunit n=19 Tax=Francisella RepID=A0Q3U8_FRATN Length = 367 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 216/369 (58%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F + R+ LLKPLQ + + T+P+L +L + + L +T +DL+ E+ +A V Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + A K ++I R L E + I ++ ++ + S S F+L +L A ++P +D Sbjct: 60 SCNTTIKLALNADKIYNIVRSLNENSMIDFRVNENKVTIVSNNSTFNLISLNADNYPLID 119 Query: 121 D-WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + F L Q +I FSMA+ D RY+LNGM +E LR V+TDGHR+++ Sbjct: 120 SNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRMSI 179 Query: 180 CSMPIGQS--LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 I + I+P+K ++EL +++ + +++ +G N ++A G++ F SKL+ Sbjct: 180 TEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DGR+PDY++V+PKN K L K + R +IL+N+K++GVRL +S+NQL ++ANNP Sbjct: 240 DGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNP 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + E+AE+ ++V Y+ MEI FN Y+LD++N L E + + L + S ++D ++ Sbjct: 300 DNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLSEETMSIYLDNPNMSALVKDEKD-NS 358 Query: 358 AYVVMPMRL 366 +++MPM++ Sbjct: 359 LFIIMPMKI 367 >UniRef50_UPI00016C0202 DNA polymerase III subunit beta n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0202 Length = 390 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 183/368 (49%), Gaps = 4/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L + + V R T P+L +L+ + TL+L G +LEM + + Sbjct: 23 MKFICNQNILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMGIEKTIEG- 81 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G + A+ F +I + +P+G + ++ + SG+SRF+L TL + FP L Sbjct: 82 EILENGKIAIDAKLFSEIIKKMPQGDIKMATINETQITITSGKSRFTLQTLDTSHFPTLP 141 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D + T+ Q +K LI+ T FS+A ++ R L G FE E +L VA DG +A Sbjct: 142 DVSLKQSLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEVENGQLSLVAIDGFXIAFR 201 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 ++ + S ++P K ++E+ ++L ++ + + G N+I ++ D S L++G Sbjct: 202 TISLNNKNLSIEKVIPAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVSXLLEG 261 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNPE 298 F Y+ + + + + + + R+A++S E +R ++++ L IT+ N + Sbjct: 262 EFLRYKDIFSNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIITS-NTD 320 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + E +D+ +G ++I FN Y++D L ++ + + + + I S Sbjct: 321 IGNSLEEIDIILTGMPLKIAFNPRYLIDALKNIEDDEICINFLSKTAPAVIMPINSDKYR 380 Query: 359 YVVMPMRL 366 Y+V+P+R+ Sbjct: 381 YLVLPIRV 388 >UniRef50_Q2RMJ6 DNA polymerase III, beta subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMJ6_MOOTA Length = 374 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 180/374 (48%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + L+ +Q+V + T + +LLQ + TL+L GTDL++ ++ V Sbjct: 1 MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G +PAR F ++ R LP + L+ + + +S+ L+++ A+ FP L Sbjct: 60 EVIEEGELLLPARIFTEMVRRLPPTSLSLQSLQDNTVEIAYQQSKVQLNSIDASQFPLLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETE--GEELRTVATDGHRLA 178 + FT+ +K I + + D+R NG+L+E E VATD HRLA Sbjct: 120 PVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTHRLA 179 Query: 179 VCSMPIG--QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 V S + + +VP + + EL R+L G D +++ IG + I A ++L Sbjct: 180 VYHGQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLYTRL 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG----VRLYVSENQLKI 292 ++G+FP Y++V+P + +E L RA +L+ ++ + + L V E LKI Sbjct: 240 LNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKSLKI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 T+ E EE L +G +E+ N Y+L+ L + ENV + L + V + A Sbjct: 300 TSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETLRVIDTENVILELLAPLKPVVVRPA 359 Query: 353 ASQSAAYVVMPMRL 366 ++ +++P+R+ Sbjct: 360 GQENYFCLILPVRI 373 >UniRef50_C9YCP5 DNA polymerase III subunit beta n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCP5_9BURK Length = 362 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 132/337 (39%), Positives = 205/337 (60%), Gaps = 1/337 (0%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 ++ +L LQ V+G + R TLPIL N+LL+ +L LT +DLE+++ L Sbjct: 4 LKATQDKVLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGD 63 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD- 121 TT+ ARK DI R +P ++++ +++++ G+S+F+L T+ A DFP + + Sbjct: 64 TGSFTTTIGARKLIDILRTMPGDQTVSLESSQSKIILKGGKSKFTLQTMQAEDFPLVQES 123 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 F++PQ T+K L+ F+MA D+RYYLNG+LF EG++L VATDGHRLA S Sbjct: 124 ASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFAS 183 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRF 241 + +P VI+PRK VIEL R+L + + +Q +N + F +KLV+G+F Sbjct: 184 ATLDVEVPKQEVILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTKLVEGKF 243 Query: 242 PDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEE 301 PDY RV+PKN + G + L + R AIL+++KF+GVRL + L++ +NN EQEE Sbjct: 244 PDYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASNNAEQEE 303 Query: 302 AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 A + LD+ Y G +EIGFNV+Y++D L+ + + V++ Sbjct: 304 AVDELDIDYGGDSIEIGFNVTYLIDALSNMSQDMVKV 340 >UniRef50_C7M837 DNA polymerase III, beta subunit n=7 Tax=Bacteroidetes RepID=C7M837_CAPOD Length = 374 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 172/371 (46%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V +LLK LQ G + T+PIL N L +++ +L+++ +DLE + + V Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G+ V A+ DI + E + E + + S ++L+ L +FP Sbjct: 60 ESDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNVIEISSTTGNYTLAYLDGEEFPRPV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + T+ + ++ T F+ + D+R ++G+LF+ L V TD H+L Sbjct: 120 ALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTFVGTDAHKLVKY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ + I+P+K + L +L G + + V+ +N + D F +L+DG+ Sbjct: 180 ERLDIKANEAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICRLIDGK 239 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ- 299 +P+Y V+PK L + R ++ SN+ VRL ++ + L I+A + + Sbjct: 240 YPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAEDVDYS 299 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA----SQ 355 + EE Y G ++EIGFN ++ +++N L + + + ++ + I + Sbjct: 300 NKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEILIEMSLPNRAGLITPVDGLDEGE 359 Query: 356 SAAYVVMPMRL 366 + MP+ L Sbjct: 360 KVLMLAMPIML 370 >UniRef50_D1N691 DNA polymerase III, beta subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N691_9BACT Length = 364 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 191/366 (52%), Gaps = 5/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV RE L K LQ+V +G R LP+LGN+++Q +G L+LT TDLE+ + +V V Sbjct: 1 MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TT PARK + + + + + ++ G S F+L LPAADFP Sbjct: 61 -VEEAGVTTAPARKLASLVGCFVGTDVVFEVDDKDHIKIKCGTSHFTLLGLPAADFPAAV 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++++ E + ++ KR+I + ++++ D R L G+L + VATDG RLA+ Sbjct: 120 EFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTLVATDGKRLAMQ 179 Query: 181 SMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I+P K E R+L GD + +++G G F T+KL++G Sbjct: 180 EKTPEAIEGGDGDAIIPLKAASEARRLL-EGDAVMTIRLGDKQCTFVAGGFELTTKLIEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+YR+V+P + + +E + +++ ++ + L NQL + A++ E Sbjct: 239 TYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQASSAEV 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E +++++ + G E+ FN +Y+ D L + +RM + D ++ V I S+ Y Sbjct: 299 GEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADADKIRMKINDPLNPVAI--EGSEGFLY 356 Query: 360 VVMPMR 365 V+MP+R Sbjct: 357 VIMPIR 362 >UniRef50_A8RAI6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAI6_9FIRM Length = 372 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 173/371 (46%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M F + + + L S + LP + + + + LTG+D ++ + + Sbjct: 1 MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60 Query: 59 ---LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 +++ E G+ + A+ +I R ++G + + F ++ + A + Sbjct: 61 EDCVLEIKEMGSIVIEAKYILEIVRKTDADIIEFEMIDGSLTKISGNSAEFRINGMKAIE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + + F L + +K++I T F+ + ++ R L G+ F EG EL VATD + Sbjct: 121 YPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHCEGNELHCVATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA ++ + + L + +V +P K + E+++ L G+N + + + + +GD I ++ Sbjct: 181 RLARKTVELEEEL-NFNVTIPSKSLQEVLKTL-EGENEVEIAVNDKKAQFIIGDTIVQTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG +P+ R++P D L L A RA+ + N+ ++ +SE + +++ Sbjct: 239 LIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAECVLSSK 298 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E + E+L ++ G +EI N YV + + AL V+ L + I Sbjct: 299 SIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAIRALGGSLVKFSLCGEMKPFVITSLED 358 Query: 355 QSAAYVVMPMR 365 +V+P+R Sbjct: 359 DKILQLVLPVR 369 >UniRef50_B9KGQ1 DNA polymerase III beta chain (DnaN) n=12 Tax=Anaplasmataceae RepID=B9KGQ1_ANAMF Length = 379 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 188/369 (50%), Gaps = 6/369 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + ++ RE LL+ L VS + R ++ +L + ++ DG + L+ TDL++ + A V Sbjct: 13 ECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACV-NAS 71 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G A+ +DI R L + ++ R+LV G ++F L + FP ++ Sbjct: 72 VVHKGVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVECGNAKFFLHVVAPEKFPAIEG 131 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + + F + + + L+ T+FSM+ ++ RY L G+ + L VATDGHRL++ Sbjct: 132 GEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAEDMLCCVATDGHRLSLAK 191 Query: 182 MPIGQSL-PSHSVIVPRKGVIELMRMLD---GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + L P VIVPRK V EL++++ + V I I + SK+V Sbjct: 192 VNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSKVV 251 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY ++P+ + L A R +++ +K + ++L + +L +++ + Sbjct: 252 DGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLTLSSASS 311 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 +Q +A E L+V Y G E+ IG N Y+++VL +K ++ D ++V I+D + Sbjct: 312 DQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGA-CEVVFQDGNTAVLIQDKEPGGS 370 Query: 358 AYVVMPMRL 366 +++MPMR+ Sbjct: 371 MHIIMPMRI 379 >UniRef50_A8DJY7 DNA polymerase III beta subunit n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJY7_9BACT Length = 391 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 112/392 (28%), Positives = 185/392 (47%), Gaps = 29/392 (7%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT------LSLTGTDLEMEMV 54 M+F+V + LLK L ++ + + T+PIL N+LL G L+L GTDL+ + Sbjct: 1 MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 G +PAR+ DI R LP+ M + RSRF L + Sbjct: 61 TSCP-ATIRHSGTALLPARRLLDIVRNLPDADIHFKSDGSGNMNITCERSRFRLFSPAPE 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG--------EE 166 +P+L + + ++P M+ +I F+ + ++ RY LNG+ EG Sbjct: 120 GYPSLPE-TPALPLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDASGL 178 Query: 167 LRTVATDGHRLAVCS----------MPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLR 215 LR VATDGHRLA+ +P + S ++P+K + E+ R+ + Sbjct: 179 LRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIARLAADTTATEIA 238 Query: 216 VQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN 275 ++ +G +F S+L+ G+FP+Y V+P+N + + + L AF R ++++ Sbjct: 239 FGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGVVAD 298 Query: 276 EKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCEN 335 E V+L+ +E +++I + +PE EA E L V Y G + I FNV+Y++D L Sbjct: 299 ETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAHSTQ 358 Query: 336 VRMMLTDSVSSVQIEDAASQ--SAAYVVMPMR 365 R D ++ +Q+ YVVMPMR Sbjct: 359 TRFEFKDEITQIQMRPVDGDGYDYRYVVMPMR 390 >UniRef50_D0KVU1 DNA polymerase III, beta subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVU1_HALNC Length = 370 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 147/371 (39%), Positives = 220/371 (59%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V+R+ + QV G + R T+ IL NLLL+VADG L+L TDLE+++ V V Sbjct: 1 MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVD-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q PGATTV ARK DI + + A+IA+ + + G F L+++ A FP + Sbjct: 60 QMQAPGATTVNARKLADIVKSASQDAKIALTQTDGWLEIDIGTGVFRLASIEAGSFPQMT 119 Query: 121 -DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 D ++ ++ Q + LI+ TQFSMA QDVRY+LNG+L E + ++ VATDGHRLA Sbjct: 120 IDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPGQMTAVATDGHRLAY 179 Query: 180 CSMPIGQ-SLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + + VIVPRK V E+++ LD D+ + + N I +G+ SKL+ Sbjct: 180 AHLSDERLTENNRQVIVPRKMVSEMLKALDRDSDDEVSLAFRDNQIELLIGENYLISKLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG++PDY RV+P++ K L LKQ RA+ILSNE+F G Y+S +L I ++N Sbjct: 240 DGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMIESSNA 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--AASQ 355 E E ++E + V Y ++++I FN+SY+L++L ++ E V M L SSV I+ Sbjct: 300 EHESSKETMSVGYDASDLKISFNISYLLNILAVIESEEVCMELEAPESSVLIKPVMPGDI 359 Query: 356 SAAYVVMPMRL 366 + YV+MPM+L Sbjct: 360 DSKYVLMPMKL 370 >UniRef50_Q1V1G8 DNA polymerase III n=5 Tax=root RepID=Q1V1G8_PELUB Length = 370 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 205/370 (55%), Gaps = 6/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V ++ L + L G + R TLPIL N+LL ++ L++T TDL++ + ++ V Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 + E G TT + +DI R G +I + L ++ V S +S F+L+ + A++FP Sbjct: 61 EVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDVSKLQVESEKSVFNLNCISASEFPLT 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET----EGEELRTVATDGH 175 D+ ++ EF++ + +L+ +FS+++ + R+YL+G+ F + L ATD H Sbjct: 121 DENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 R+++ + + Q + +I+P+K + +L +L+ D +++ + I+ + + I SK Sbjct: 181 RMSISKIRLDQQVDFEPIILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISK 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG+FP+Y +V+PKN K LE L + R A +S +K GV+ +S++ L ++ N Sbjct: 241 LIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVN 300 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 N + +E L V + ++EI FN Y++DV L + + + D+ S I+D Sbjct: 301 NTNSGDGKESLTVKFD-HDLEISFNSRYLIDVAAQLDGDKIEIFFNDTGSPALIKDPGDF 359 Query: 356 SAAYVVMPMR 365 + +VVMPM+ Sbjct: 360 DSIFVVMPMK 369 >UniRef50_C7N0K1 DNA polymerase III, beta subunit n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0K1_SLAHD Length = 365 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 166/368 (45%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF++ + L L V+ R TLP+L + + +L L TDL+ + VA + Sbjct: 1 MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G +P + DI + LP+ A I V ++ V ++ F+L TL DFP+ Sbjct: 61 -VEDEGMCVIPQKLLSDIVKNLPDAA-ITVDVDDSEATVSCDKTSFTLHTLIPDDFPSFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + T+P ++ + + R L G+L T E + VATD +RLAVC Sbjct: 119 EVNIDNQITVPFKQFSSAVKKVAKAASKDQSRAVLTGVLLRTTPEGMSIVATDSYRLAVC 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++ + +V V+E+ L + + + +N + GD + ++ ++G+ Sbjct: 179 NLKFDSAGEEFEALVTSSFVLEVAS-LPEVQETIDICLSANQVMFRFGDTVMVNRRIEGK 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE--NQLKITANNPE 298 +P Y +++ + L A R ++S+ ++ ++E ++ N+ E Sbjct: 238 YPAYEKLIAGSYTTKTCYTTSALITAVKRVGLMSSAAS-PIKFDINEATKNTVLSTNSQE 296 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 A E++ +G +EI N Y++D L+++ ++V S+ + Sbjct: 297 IGTASEVVSCEVNGENVEIALNHQYIIDGLSSISTDHVFFETQGSMKPGVFRSGEGEDFL 356 Query: 359 YVVMPMRL 366 Y++MP+RL Sbjct: 357 YLLMPVRL 364 >UniRef50_A5I9F2 DNA polymerase III beta chain n=6 Tax=Legionella RepID=A5I9F2_LEGPC Length = 367 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 139/366 (37%), Positives = 230/366 (62%), Gaps = 2/366 (0%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + T+++E LL PL VSG + + +L IL + LL+++DG L +T TDLE+EM A+VA Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 + G+ TVPA+KF DI R L E ++ + + ++ RS F L+TLPA ++P+ +D Sbjct: 63 NNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKALVTIKQNRSTFKLATLPAENYPSSED 122 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 ++VE T+P+ + +L+++T F+M+ QDVR +LNG+L E + + VATDGHR+A+ Sbjct: 123 ECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSNIISAVATDGHRMAISR 182 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +++P+KGV EL+R+L+ D + + G ++I+ F+F SKL++ R Sbjct: 183 YSCNN-ITQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLSKLIEAR 241 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP Y + +P+ DK++ C LK+A +R IL++EK + V L++ QL + ANN EQE Sbjct: 242 FPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTLIANNNEQE 301 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EA E L G E++IG N +Y+LDVL +R+ ++++ SS+ IE + + Y+ Sbjct: 302 EAIETLSAETQGDELKIGLNATYLLDVLAHFSDGQIRLSMSNTESSILIESLVNDNYQYI 361 Query: 361 VMPMRL 366 +MPM++ Sbjct: 362 IMPMKI 367 >UniRef50_Q47TU0 DNA polymerase III beta subunit family protein n=2 Tax=Streptosporangineae RepID=Q47TU0_THEFY Length = 379 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 163/382 (42%), Gaps = 20/382 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD---GTLSLTGTDLEMEMVARV 57 MKF V+R+ + + L RP +P+L + L+VAD TL L+G D E+ A V Sbjct: 1 MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQASV 60 Query: 58 ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 V E G+ VP R +I R LP + +EG R L+ G +RF+L TLP D+P Sbjct: 61 D-VHAEEAGSVLVPGRLLAEIVRTLPPHP-VEFHVEGSRALLTCGNARFTLLTLPLEDYP 118 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + + P + S + D L G+ G+ + ATD +R+ Sbjct: 119 TLPAMPRTIG-SAPADVFATAVRQVLPSTSRDDTLPMLTGVHLTFRGDTILLAATDRYRI 177 Query: 178 AVCSM--PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN------IRAHVGD 229 AV M + S +VP + + + R L GG+ + + + I Sbjct: 178 AVREMWWKPEEVDIDTSALVPARTLGDFSRSLTGGNVDIALSTSDSRGAGEGMIGFEHDG 237 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 T++L+D F Y P + L +A R A+++ ++ VRL + ++ Sbjct: 238 KRTTTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVA-DRSTPVRLSFTSSE 296 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + + A + + +A E L+V + G M I FN Y LD L ++ E + I Sbjct: 297 VVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVETERAFLRFVAPTRPAVI 356 Query: 350 EDA-----ASQSAAYVVMPMRL 366 Y+VMP+RL Sbjct: 357 TGTPAKEGGKPDFRYLVMPLRL 378 >UniRef50_O84078 DNA polymerase III subunit beta n=14 Tax=Chlamydiales RepID=DPO3B_CHLTR Length = 416 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 109/367 (29%), Positives = 180/367 (49%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R L +++V + +P+L ++L++ + L T TDL + V Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVK-A 109 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + +E G+ T+P+R+FF + R L E GE + SG S F L ++ DFP L Sbjct: 110 KVYESGSVTIPSRRFFQLIRELTEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPMLP 169 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D Q+ + FTL +K + + T F+++ ++ RY L G+L + V TDG RLA Sbjct: 170 DMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIANGTMTVVGTDGKRLAKI 229 Query: 181 SMPIG-QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I S I+P K V E++RM D + + I G+ + +KL+ G Sbjct: 230 DTEISLDPSFSGDYIIPIKAVEEIIRM-SSEDVQSTIFLDQTKIAVECGNTLLVTKLLSG 288 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPD+ V+ + L+ + L + A+ +NE V+ S +L +TAN + Sbjct: 289 EFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTANCTKV 348 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + + V Y+G +EI FN + LD+L + E V++ ++DS + I S + + Sbjct: 349 GEGKVSMAVNYTGETLEIAFNPFFFLDILKHSRDELVQLGISDSYNPGIIT--DSTRSLF 406 Query: 360 VVMPMRL 366 V+MPMRL Sbjct: 407 VIMPMRL 413 >UniRef50_C8VV98 DNA polymerase III, beta subunit n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VV98_DESAS Length = 367 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 179/368 (48%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +++LL +Q V + + LPIL +L + D TL + TDLE+ + + V Sbjct: 1 MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 + E G +P++ DI R LP+ + + ++ S+ ++ A +FP L Sbjct: 60 KVIETGEIVLPSKYIIDIIRRLPDTVIEFESNDYLNSITIKYKNSQANIHGFAADEFPML 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 F + + K+++ T F+ + R G+ F+ +E + VATD HRLA+ Sbjct: 120 PPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKMVATDTHRLAM 179 Query: 180 CSMPIGQSLPSH-SVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + +IVP K + EL+++L+ D +++ + N I + + S+L+ Sbjct: 180 ITEHLPLIKQELPGIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINIISRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G++P+Y V+PK+ ++ Q+ RA++LS+ + +R+ + + ++N Sbjct: 240 KGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIVISSNN 299 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 E E + V + G ++I FN Y++D L A+ E + + L+ ++ + ++ Sbjct: 300 EAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDSEEIYLELSGPINPCLLR-TEDRNY 358 Query: 358 AYVVMPMR 365 +++P+R Sbjct: 359 LSILLPVR 366 >UniRef50_B2KAM5 DNA polymerase III, beta subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAM5_ELUMP Length = 369 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 194/370 (52%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E L+ L V + R TLPIL N L++ +G + L TD+EM + + Sbjct: 1 MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFPNL 119 + E G+ T+P ++ DI + LP EI + + E ++ ++SG+S+F + P +++P + Sbjct: 60 EILEEGSVTIPLKEVSDILKNLPNDKEINLTVGEDNKVHIKSGKSKFWVIGTPKSEYPLI 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + L ++ ++E T FS + Q+ RY LNG+L+ G + VATDG RLA+ Sbjct: 120 PEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWVKTGNKFEVVATDGRRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLD----GGDNPLRVQIGSNNIRAHVGDFIFTSK 235 I +I+P K + EL+R D+ L + + SN + ++ + + S+ Sbjct: 180 AVDTIESDTKDFKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETTYISR 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L++G FP+Y +V+P + + + RA++ +NE V+ ++ N LKIT+N Sbjct: 240 LIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLKITSN 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + + ++E + V Y+ EI FN YVLDVL + E V ++ V IE+ + Sbjct: 300 SQKMDFSDE-MKVEYTAEPFEISFNPQYVLDVLKNISTEKVEFSFINAAQPVLIEEINNT 358 Query: 356 SAAYVVMPMR 365 YV+MP+R Sbjct: 359 KFKYVIMPVR 368 >UniRef50_D1VRK9 DNA polymerase III, beta subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRK9_9FIRM Length = 365 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 186/367 (50%), Gaps = 5/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + R+ L K + V + R T+ IL +L++ D +SLT TD E+ +V + + Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V R F +I R L I +++E M ++ G S F++S A +P L Sbjct: 61 -VEEEGQIVVNGRLFGNIIRKLNNDD-IFIKVENFNMNIKCGNSEFNISVQNAEGYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + F+L +K I T F+++ + R G+ + + + VA DG R+A+ Sbjct: 119 NIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDYINFVALDGFRMAIM 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S S IVP + +EL ++LD + + + SNNI G+ +F S L+ G+ Sbjct: 179 KINKNTGFTS-SAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYSTLISGK 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKITANNPEQ 299 F DY +L + + AF RA++L+ ++ V + ++ ++ I + + E Sbjct: 238 FFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDSKS-EI 296 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E+++ + G ++I FN Y+L+ + ++ +N+ + LTD ++ I++ ++ Y Sbjct: 297 GNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNIILNLTDFINPCIIKEEDNEDYIY 356 Query: 360 VVMPMRL 366 +V+P+RL Sbjct: 357 LVLPVRL 363 >UniRef50_Q50790 DNA polymerase III subunit beta n=27 Tax=Corynebacterineae RepID=DPO3B_MYCTU Length = 402 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 169/390 (43%), Gaps = 30/390 (7%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F + RE + V+ L RP +P+L +LL +D L+++G D E+ A+V + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV-GAEI 73 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 PG+ V R DI R LP + V +EG R+ + G +RFSL T+P D+P L Sbjct: 74 VSPGSVLVSGRLLSDITRALPNKP-VDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 E LP I + D L G+ E GE + ATD RLAV + Sbjct: 133 PEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVREL 191 Query: 183 PIGQSLPSHS--VIVPRKGVIELMRM-LDGGDNPLRVQIG-----SNNIRAHVGDFIFTS 234 S P V+VP K + E + + G D L + G + T+ Sbjct: 192 KWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTT 251 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+D FP +R++LP L +A A+++ ++ VR+ ++ ++++A Sbjct: 252 RLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGSVRLSA 310 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + AEE L V Y+G + I FN +Y+ D L++L+ E V T + + + Sbjct: 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 Query: 355 Q------------------SAAYVVMPMRL 366 Y++MP+RL Sbjct: 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 85/225 (37%), Gaps = 17/225 (7%) Query: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184 ++ F L + + + ++ + L+G+L L D + ++ + Sbjct: 12 DLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD-YEVSAEAQVG 70 Query: 185 GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD-GRFPD 243 + + SV+V + + ++ R L P+ V + N + G+ F+ + +P Sbjct: 71 AEIVSPGSVLVSGRLLSDITRALPN--KPVDVHVEGNRVALTCGNARFSLPTMPVEDYP- 127 Query: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF-----RGVRLYVSENQLKITANNPE 298 LP P++ +L +A ++ AI + G+R+ + + + A + Sbjct: 128 ---TLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDR- 183 Query: 299 QEEAEEILDVTYSGAEMEIG--FNVSYVLDVLNA-LKCENVRMML 340 A L + S ++E + + A + +VR+ L Sbjct: 184 FRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSL 228 >UniRef50_Q4FVT2 DNA polymerase III, beta subunit n=5 Tax=Moraxellaceae RepID=Q4FVT2_PSYA2 Length = 391 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 148/392 (37%), Positives = 226/392 (57%), Gaps = 27/392 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVA--RVA 58 M+ ++ RE LLK + ++ R + ILGN+ LQ+++ L LT +DLE+E+ + ++ Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117 + G TT+PA K DIC+ LP A++ + E ER L+ SG+SRF+L TLP+ D+P Sbjct: 61 AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTTQENERCLLTSGKSRFTLGTLPSEDYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +L + ++ T+ ++ + LI TQF+MA QDVRYYL GMLF+ ++L TVATDGHRL Sbjct: 121 SLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQQLTTVATDGHRL 180 Query: 178 AVCSMPIGQSLP-SHSVIVPRKGV-------IELMRMLDGGDNPLRVQIGSN--NIRAHV 227 A+ I + + I+PRK V EL +ML DN + + G + Sbjct: 181 ALARSVIDVNADLNMQAILPRKAVIELERLASELGKMLGDQDNAVTLSFGREFLQVSLPF 240 Query: 228 GD------------FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN 275 GD FT++L+DG+FPDYRRV+P N DK + + R AILSN Sbjct: 241 GDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVAILSN 300 Query: 276 EKFRGVRLYVSENQL-KITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE 334 EK RGV + + + ++ ANN EQ+EA E++ Y G ME+ FN +Y+ DVL ++ + Sbjct: 301 EKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGVIQGD 360 Query: 335 NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 ++M ++ S +SV + + YV+MPMR+ Sbjct: 361 -LQMHMSQSNASVLVNQLNDEFHQYVIMPMRI 391 >UniRef50_Q11UU6 DNA polymerase III, beta subunit n=13 Tax=Bacteroidetes RepID=Q11UU6_CYTH3 Length = 374 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 176/371 (47%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V LLK L ++G + P +PIL N L ++ DG L + +DL+ M+ +A V Sbjct: 1 MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIA-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEI-AVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ VPA+ D + LPE + E + + S R+ LS A DFP + Sbjct: 60 EAKAKGSIAVPAKILLDTLKNLPEQPVTFTIDPETYSIEISSDNGRYKLSGENATDFPKV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + R I +T F+ ++ +++ + G+ VATDGHRL Sbjct: 120 PGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATFVATDGHRLIR 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S ++++I+P+K + L L + ++++ ++N + +L+D Sbjct: 180 YRRTDIVSEMANTLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMICRLIDE 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 RFPDY +P + L + + R +I +N+ VRL ++ ++L+I+A + + Sbjct: 240 RFPDYENAIPVDNPNVLTITRTDMMNSLKRISIYANKTTHQVRLKLAGSELQISAEDLDF 299 Query: 300 -EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ--- 355 EA E L + G +MEIGFN +++++L+ L + M + + I A Sbjct: 300 SNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDSPQISMHFSAPNRAGIITPADKDEHE 359 Query: 356 SAAYVVMPMRL 366 +VMP+ L Sbjct: 360 DVLMLVMPVML 370 >UniRef50_A8F4G9 DNA polymerase III, beta subunit n=7 Tax=Thermotogaceae RepID=A8F4G9_THELT Length = 367 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 168/366 (45%), Gaps = 3/366 (0%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + + VS + + PI+ +L ++ L TDLE + AR+ + Sbjct: 3 RLKTNVGEFTSKISIVSKTIPSKTIKPIMACILFDISHDGTFLHATDLETGVKARMES-E 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G V A+ ++I R LP E+ ++ M + GRS+F L T+ DFP + Sbjct: 62 ADGEGKFAVDAKTVYEIVRTLPNEEEVLLEFSSNLMTLECGRSKFRLPTMDPGDFPEISL 121 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 L T+ +IE F A + LNG+ +E LR VA+DG RLA+ Sbjct: 122 TTEGNTLMLDAKTINDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRLVASDGFRLALSE 181 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + S S ++ K + EL +++ D+ + ++ + + D ++V+ Sbjct: 182 ERLNAQSES-SFLISLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMRVVEID 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDYR+VLPK + D + +A R +++ VRL +SE+ L +++ +P+ Sbjct: 241 FPDYRKVLPKAFKSKVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSRSPDYG 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 E E + + G ++ I FN ++L+ + + E V + DS S +QI + Y+ Sbjct: 301 EVNEEIPIKKEGEDITIAFNPLFLLEAMRHVHTEEVELNFVDSTSPLQINPLNVEGYLYI 360 Query: 361 VMPMRL 366 +MP+R+ Sbjct: 361 IMPIRI 366 >UniRef50_Q6MAH0 Putative DNA polymerase III, beta chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAH0_PARUW Length = 403 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 179/373 (47%), Gaps = 9/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L + ++ + +PT+PIL N L++ + L LT TDL + + Sbjct: 30 MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTE-A 88 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G+TT+PA++ + R L E + +G SRF L+ + D+P+L Sbjct: 89 KILEEGSTTLPAKRLSQLVRELTAVNVEISTNTNEITTIIAGSSRFKLNGMSKTDYPSLP 148 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D F + Q+ +K L+ T F+++ +D RY L G+ + + + TDG RLA Sbjct: 149 DLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITFIGTDGKRLARA 208 Query: 181 SMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 I S I+P K V E+++ L + +++ + ++ + +KL+ G Sbjct: 209 KGVIDNDPSFSGQAIIPIKAVDEILKNLTD-EGEVKISLMADKVAIEANQMRILTKLLSG 267 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +PD RV+P+ + + + L + ++ + + VR +LK+TAN + Sbjct: 268 DYPDVNRVIPEKSEIIVTLHREELSSLLRQISLFTADHNHSVRFTFIPGELKLTANTMDI 327 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA------ 353 E + V Y G ++EI FN + +D+L K E V M LTD+ + I D+A Sbjct: 328 GEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKGETVIMGLTDAYNPGIITDSAELANSL 387 Query: 354 SQSAAYVVMPMRL 366 S +V+MPMRL Sbjct: 388 DASPLFVIMPMRL 400 >UniRef50_B9KC54 DNA polymerase III, beta subunit n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC54_THENN Length = 366 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 174/367 (47%), Gaps = 3/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK L + S L + P+L L +V +G + TDLE + A V Sbjct: 1 MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLETGVKASVNCA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + VP + + LP+ + LEG+ +++ SG + F ++T+PA +FP++ Sbjct: 61 EISGDARFVVPGDVLQKLVKVLPD-ETTELSLEGDNLVITSGSTVFRITTMPADEFPDIA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +S + F + + ++ ++E F+ A + LNG+ +E LR VA+DG RLA+ Sbjct: 120 PAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRLVASDGFRLALA 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKLVDG 239 I + ++ K + E+ +L+ P + V+ + D ++VD Sbjct: 180 EEQIENEEE-TNFLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTNDVETVMRVVDA 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPDYRRV+P+ + L+++ R +++++ V+ + EN +++ + +P+ Sbjct: 239 EFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENTMRLVSRSPDY 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + L+V G ++ I FN +++D L ++ E + M DS S QI Y Sbjct: 299 GEVIDELEVQKEGEDLIIAFNPKFIVDALRRIETEELEMNFVDSTSPCQINPLDISGYIY 358 Query: 360 VVMPMRL 366 +VMP+RL Sbjct: 359 IVMPIRL 365 >UniRef50_B8E2I1 DNA polymerase III, beta subunit n=2 Tax=Dictyoglomus RepID=B8E2I1_DICTD Length = 367 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 180/370 (48%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ++E L K LQ V + + T+PIL + ++ + TL L G +LE+ + + ++ Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG +PA F D+ LPE E R ++ +G S + +FP ++ Sbjct: 61 -VEEPGEVCLPASLFIDVIGKLPEVTLEIHVNERNRAVIHAGYSDIEIQGESTEEFPKVE 119 Query: 121 DWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 E + + + I+ T F+ A +++ L G+LFE + +L VA DGHRLA+ Sbjct: 120 IGNIGEYHASFDRILFAKAIKQTIFAAAEDEIKQVLTGVLFEGKEGKLNMVAVDGHRLAL 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 ++ I + +IVP K + E +++ D+ + + N + + G+ F S+L+ Sbjct: 180 KTLEIEKDFAP--IIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVFNCGEIYFISRLLQ 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKITANNP 297 G+FP Y +++P + +A R + + ++ V++ +S ++ I+ Sbjct: 238 GQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKISLSSEEVVISTLPS 297 Query: 298 EQEEAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E+ A+E+L +EIGFNV Y++D L+ + V M T + I ++ Sbjct: 298 ERGFAKEVLPAEVEIDGNLEIGFNVEYLMDPLDNADWDEVVMRFTSDLGPALITSPEDEN 357 Query: 357 AAYVVMPMRL 366 Y++MP+RL Sbjct: 358 YTYILMPVRL 367 >UniRef50_C8NI23 DNA polymerase III, beta subunit n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NI23_9LACT Length = 385 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 178/382 (46%), Gaps = 18/382 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V R+ LK L V + + T+PIL + L ++ L+LTG+D E+ + + + Sbjct: 1 MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60 Query: 61 Q------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 EPG+ +PAR F +I + LP + + + +G + F+L+ L A Sbjct: 61 DEELQLTVQEPGSIVLPARFFGEIVKKLPLNLFSIETNDQLQATITAGSASFTLNGLSAV 120 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D+P L + + T+P +++I T +++ + R L G+ + +L+ VATD Sbjct: 121 DYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGIHMVIKDNKLKAVATDS 180 Query: 175 HRLAVCSMPIGQSLPS----HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 HRL+ +P+ S + +P K ++EL R++DG + + I N I Sbjct: 181 HRLSQRIIPLQMPAGSDALTFEMTLPGKTLLELSRIIDGLE-TIDFAITDNQILFQTETL 239 Query: 231 IFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQ 289 F S+L++G +PD R++ + + L A RA+++S +K L +S + Sbjct: 240 SFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKNNIATLTLSPER 299 Query: 290 LKITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 + +T +PE EE + V + GA +EI FN Y+ + L + ++ Sbjct: 300 ILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEALKLFGSSEAVINFLEANRPFT 359 Query: 349 IEDAAS-----QSAAYVVMPMR 365 ++ S +V P+R Sbjct: 360 LKLKEDHSGIPHSFIQLVTPVR 381 >UniRef50_B8GBZ8 DNA polymerase III, beta subunit n=5 Tax=Chloroflexaceae RepID=B8GBZ8_CHLAD Length = 378 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 177/376 (47%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRP-TLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK T ++ L + L +S + G+ TLP+L N+LL +G L LT T+LE+ + + Sbjct: 1 MKLTCMQDDLKRGLAAISHAVAGKSATLPVLANVLLATDNGRLKLTATNLEVGINRWI-G 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEI-AVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + GA VPA+ D+ GLP + + + + V GR ++ + A +FP+ Sbjct: 60 ANIAQAGAVAVPAKLLADVVGGLPNDTVTLTLDPKTQTLRVECGRFVSNIKGVDADEFPS 119 Query: 119 LDDWQSEVE-FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + +LP + IE F+ A + R L G+L T +L VA DG RL Sbjct: 120 LPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVLVRTRDRQLTLVAADGFRL 179 Query: 178 AVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQI--GSNNIRAHVGDFIFTS 234 A+ ++P+ +++ + ++P + + EL R++ + + + G +++ H + S Sbjct: 180 AMRTIPLAETVAHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTENTEVVS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE------N 288 +L++GRFPD+ R++P+ L +A A+ ++ V+L + Sbjct: 240 RLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAGEMGPG 299 Query: 289 QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 ++ ++AN+ E + LD + +G I NV ++ D + A+ + + + S Sbjct: 300 RIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGSNQIAFEMQSAQSPAV 359 Query: 349 IEDAASQSAAYVVMPM 364 + ++VMPM Sbjct: 360 FKPVGHDGYIHIVMPM 375 >UniRef50_B5YGU0 DNA polymerase III, beta subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGU0_THEYD Length = 368 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 189/372 (50%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M ++++ + + L ++ + + +P+L + L+ V + + + TDLE + + Sbjct: 1 MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLETAVKQPLE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G +PARKF++I + L E EI + + + ++SGRS F L++L ++FP Sbjct: 60 EVLEIGKACIPARKFYEIVKELDEDIEIMLL--EQWIKIQSGRSNFRLASLDPSEFPVWP 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRLAV 179 + L + + IE T ++ D RY LNG+LF+ E E V TDGHRLA Sbjct: 118 QIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQIKEPAEFNVVGTDGHRLAH 177 Query: 180 CS---MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 I VI+ +K + EL + L + + + IG ++ + F +++ Sbjct: 178 FKATVEDISSIEGEKKVILSKKSLNELRKFLSDTE-TVSIHIGKTHVMCEIDGINFLTRM 236 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 ++G +PDY V+P++ DK + L + R ++LS E+ V+ ++ L I++++ Sbjct: 237 IEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLIISSSD 296 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 PE EA + L V Y G IGFN Y+++ L + + ++ +++ +V I D + S Sbjct: 297 PEIGEARDELTVDYQGEPFIIGFNARYLIEALERITSDKAKITMSEPDKAVYITDGEAAS 356 Query: 357 AAY--VVMPMRL 366 Y VVMP+RL Sbjct: 357 FVYECVVMPLRL 368 >UniRef50_C6X4N3 DNA polymerase III beta subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4N3_FLAB3 Length = 385 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 175/374 (46%), Gaps = 11/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V L K L VSG + + PIL N L ++ + L +T +D E +V + V Sbjct: 10 MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLE-V 68 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-----GERMLVRSGRSRFSLSTLPAAD 115 + + G VPA+ F D + E + G + + + F+++ A D Sbjct: 69 RSDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAED 128 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P L ++ + + + + T F+ ++ +R + G+LF+ + +E V+TD H Sbjct: 129 YPELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNFVSTDSH 188 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL V + I+P+K + +L + + ++ N + G+ I+ + Sbjct: 189 RLVVYKRTDLMNAEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIWICR 248 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG++P+Y V+PK L +LL + RA+I+SN+ VR +S N L + A Sbjct: 249 LIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHLHAE 308 Query: 296 NPEQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA- 353 + E +A+ + Y+G ++ IGF+ ++ ++L+ L +++ M ++ IE Sbjct: 309 DTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSSDDITMKMSQPNRPGIIEPVDG 368 Query: 354 ---SQSAAYVVMPM 364 ++ + MP+ Sbjct: 369 LETDENILMLSMPV 382 >UniRef50_C7QFL8 DNA polymerase III, beta subunit n=3 Tax=Actinomycetales RepID=C7QFL8_CATAD Length = 396 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 169/394 (42%), Gaps = 32/394 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-------ADGTLSLTGTDLEMEM 53 MKF VER+ L + + + L RP P+L L+ + G+++L+G D E+ Sbjct: 1 MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60 Query: 54 VARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 A++ EPG + + DI + LP + EG ++L+ G SRF+L TLP Sbjct: 61 RAQI-GADVTEPGRILIHGKLLADIAKSLPNRP-VEFSTEGSKVLLSCGSSRFTLQTLPV 118 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 D+P L + + + + + D L G+ E EGE++ VATD Sbjct: 119 EDYPALPTMP-TATGAVTASGLAGAVSQVAIAAGRDDTIPMLTGIRVEIEGEKITLVATD 177 Query: 174 GHRLAVCSMPIGQSLPSHSV--IVPRKGVIELMRMLDGGD-------------NPLRVQI 218 RLAV + S ++P K + + + L GGD + + Sbjct: 178 RFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGDWVSLALSGGDAGEGLIGFES 237 Query: 219 GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF 278 G G TS+L+ G F YR + P + +A R ++++ ++ Sbjct: 238 GEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVSLVA-DRT 296 Query: 279 RGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 ++L ++ ++ + A ++ +A E +D G ++ + FN S++LD L + + ++ Sbjct: 297 SPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVIDTQYAQL 356 Query: 339 MLTDSVSSVQIED------AASQSAAYVVMPMRL 366 T + + A + Y++MP+R+ Sbjct: 357 SFTVASKPAVLMGRPALDAPAQEEFRYLMMPLRV 390 >UniRef50_Q1NPP3 DNA-directed DNA polymerase n=2 Tax=Deltaproteobacteria RepID=Q1NPP3_9DELT Length = 376 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 96/374 (25%), Positives = 183/374 (48%), Gaps = 12/374 (3%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V R L L + G + TL +L N+LL+ + L+LT TDLE+ + RV + Sbjct: 5 FNVPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVP-AEV 63 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 PG T+PARK F++ R + + R+ + +G S L+ + A +FP Sbjct: 64 TSPGEITLPARKLFELVREAQADQIEIAEQDNTRVKINAGNSDCRLAGMAADEFPAFPPH 123 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFET----EGEELRTVATDGHRL 177 Q + + ++ LI+ T +++AH+ + + L G+L E +G LR V++DGHRL Sbjct: 124 QDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDGHRL 183 Query: 178 AVCSMPIGQSLPSHS----VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 A+ + L + ++VPRKG+ E+ ++ + G + + I + G++ Sbjct: 184 AMMESKVEADLGPLAMDRVILVPRKGMQEVRKLCESG-GQIALAIEEKQLVVKAGEYTMV 242 Query: 234 SKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 ++L+ G FPDY+ ++ + + + + L + R I + +++ V + +++ + Sbjct: 243 ARLMSGDFPDYKSIIQVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENSRMTL 302 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 ++ N + A+E + +TY G M +GFN Y + L + E V+ + S ++ Sbjct: 303 SSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEALQVMDSEMVKAYINAEDSPCLLQGD 362 Query: 353 ASQSAAYVVMPMRL 366 V+MPM++ Sbjct: 363 KDPGYLSVIMPMKI 376 >UniRef50_Q2LYA2 DNA polymerase III, beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYA2_SYNAS Length = 372 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 106/373 (28%), Positives = 191/373 (51%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++R+ L +Q+ G + + T+PILGNLLL+ D + + TD E+ +VA Sbjct: 1 MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q GA T+ A+K F++ R + + + +++ + S ++ + + + A +FP + Sbjct: 60 QIISSGAITLSAKKLFEMIREIQGDSIHFSCDDHDQITLSSQKAVYRIPGISADEFPAVA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEE----LRTVATDGHR 176 ++ + +P + +K LI F++++ + R L G L E E E LR VATDGHR Sbjct: 120 YDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDGHR 179 Query: 177 LAVCSMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 LA I + P +I+PRKG+ E+ +++D + + + + Sbjct: 180 LARSYEVIEGNSPFTLEKGIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTANTLLK 239 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 L+D +PDY RV+P + DLL R ++S E++ GV L ++ N++ + Sbjct: 240 VSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNRMIMN 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + NP+ EA + L+V Y G E+++GFNV Y++D + ++ E V + + I Sbjct: 300 STNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIREEEVLFDIGSFMKPSMIMPVH 359 Query: 354 SQSAAYVVMPMRL 366 + VVMP++L Sbjct: 360 NDRFLCVVMPLKL 372 >UniRef50_D1BQ78 DNA polymerase III, beta subunit n=3 Tax=Veillonella RepID=D1BQ78_VEIPT Length = 370 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 160/369 (43%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T + +L K + + + + + G + + +G + L G D E+ + + Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQ-LEGERMLVRSGRSRFSLSTLPAADFPNL 119 EPG V +R F ++ R LP + +G + + SG S F+L TL DF + Sbjct: 60 DIKEPGTLVVGSRYFQELIRKLPGDTIELYKPEDGNSLTITSGSSEFNLVTLHPDDFSLV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + + MK LI+ T ++ A + R G L E E+ VATD HR+AV Sbjct: 120 EQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTMVATDTHRMAV 179 Query: 180 CSMPIGQS-LPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + I + I+P K + E+ R+L + + I + S+L+ Sbjct: 180 KKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIISRLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANN 296 +G +P+Y +V+P D A R ++L+ + + +R SE+ + ++ N Sbjct: 240 EGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLSTQN 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E A+E + V + G I FN Y+ D+L +N+ + L V I + + Sbjct: 300 TEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIHLFLK-QNGPVVIRQDNNPN 358 Query: 357 AAYVVMPMR 365 YVV P+R Sbjct: 359 YTYVVTPVR 367 >UniRef50_C6XEX5 DNA polymerase III subunit beta n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XEX5_LIBAP Length = 385 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT--VATDGH 175 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 Query: 176 RLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLAV + I + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 Query: 350 EDAASQ---------SAAYVVMPMRL 366 +A YV+MPMR+ Sbjct: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 >UniRef50_B2V9G3 DNA polymerase III, beta subunit n=2 Tax=Sulfurihydrogenibium RepID=B2V9G3_SULSY Length = 362 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 190/367 (51%), Gaps = 6/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ L + ++V + LPIL N LL+ DG L++ GTDLE+ + Sbjct: 1 MKLKAYKKDLQEAFKKV--ISEKKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIP-A 57 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G+ V ++K DI + L + E + +GE + + SG++++SL T A DFP + Sbjct: 58 DVEEEGSLCVNSKKISDISKVLAQN-EALLYTDGETLKITSGKTKYSLPTFEADDFPLPE 116 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + S++ ++ + + I T ++++ + R+ LNG+ F +L VATDGHRLA+ Sbjct: 117 AFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKGKLDFVATDGHRLALY 176 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S I IVP+K + E+ +++ ++ + V + ++I +++ +++L++G Sbjct: 177 STEITGKGLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYVLSARLLEGV 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY +V+P + + + L + R I + + ++L + +N+L I+ Sbjct: 236 FPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTPPTSDT 295 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA-SQSAAY 359 AE+ ++V Y G E EIGFN Y+L+ ++ ++ +N+ + S I + Sbjct: 296 YAEDEIEVNYDGEEFEIGFNGKYILEAVDEIEDKNIVAKFINKDSQTVIIPENPEERYLA 355 Query: 360 VVMPMRL 366 VVMPM + Sbjct: 356 VVMPMTI 362 >UniRef50_C0WAM5 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAM5_9FIRM Length = 372 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 168/371 (45%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ E L K + V + P PI + + + TL L D+ M + V Sbjct: 1 MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSMKKVLE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-MLVRSGRSRFSLSTLPAADFPNL 119 +E G VPA+ D+ Q EG + + + S + + + + D+P+ Sbjct: 60 NGNEDGVILVPAQSLGDLLAKFSTDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPSF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 +++ E TLP+ + +LI T ++ + + R G+ E +G+ + V T+ HRLA+ Sbjct: 120 PEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVFMEKKGQHITCVGTNTHRLAI 179 Query: 180 CSMPIG-QSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S +S+++P + + E+ L G + + + I +G S L+ Sbjct: 180 KSADPETADDSEYSLLIPARVLKEIANNLTGELPEDVAIIQKDSKILVRMGSLSLVSSLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G FPDY R +P + L++A R ++ + ++ +RL + +++ +++ Sbjct: 240 EGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSSAAS 299 Query: 298 EQEEAEEILDVTYSGA--EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 ++ + EI++ +G + I FN Y++D + C+ V + S+S ++ Sbjct: 300 DRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISCDQVVLETNSSLSPARMMPVDDP 359 Query: 356 SAAYVVMPMRL 366 S Y++ P+R+ Sbjct: 360 SYTYIITPVRV 370 >UniRef50_C4FYD9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYD9_9FIRM Length = 404 Score = 316 bits (810), Expect = 9e-85, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 16/380 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M F++ R++ + L V+ + G+ +P+L + L++ L LTG+D + + + + Sbjct: 22 MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81 Query: 60 -----VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 +Q PG+ + AR F DI R LP + + + SG++ F++ + ++ Sbjct: 82 QEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQDHYNVQLTSGKAVFTIQGVDSS 141 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 +P L + + TLP K+LI T FS ++Q+ R L G+ L VATD Sbjct: 142 QYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDGYLTGVATDS 201 Query: 175 HRLAVCSMPI---GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 HRL+ +PI SL ++ +P+K VIEL R+LD ++ + + + + H + + Sbjct: 202 HRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDD-ESNVTFYVMAQQLVFHFDNLV 260 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQL 290 S+L++G FPD R++P + L QA RAA+L + K V+L +S+ + Sbjct: 261 IYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKMSQGSV 320 Query: 291 KITANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + ++ E L G ++ I FN Y+ D + + +++ + + Sbjct: 321 ALLVQGISIGQSTEELSYDSLEGDDLTIAFNPDYMRDAVKSFGDTTIKLGFISGERPLLL 380 Query: 350 E----DAASQSAAYVVMPMR 365 + ++ P+R Sbjct: 381 REDKVEEGHNDLIQLLTPIR 400 Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 18/187 (9%) Query: 124 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL--AVCS 181 + F++ + + ++ + L GM E + + L +D +V Sbjct: 20 PTMHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIE 79 Query: 182 MPIGQS----LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + S+++ + I+++R L ++VQ N++ G +FT + V Sbjct: 80 TSQEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQ-DHYNVQLTSGKAVFTIQGV 138 Query: 238 D-GRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAA-ILSNEKFRGV----RLYVSENQL 290 D ++P VLP+ + DK + L K+ + SN++ R + L + L Sbjct: 139 DSSQYP----VLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDGYL 194 Query: 291 KITANNP 297 A + Sbjct: 195 TGVATDS 201 >UniRef50_Q1GC42 DNA polymerase III, beta chain n=4 Tax=Lactobacillus delbrueckii RepID=Q1GC42_LACDA Length = 375 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 184/374 (49%), Gaps = 10/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV+R + L V + R +PIL + L++ + L +TG++ ++ + + Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60 Query: 61 Q---PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 G+ V A F +I R LP EG ++ + S ++ + ++ L A+ +P Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKEGNQIQITSDKADYVINGLDASAYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L + F+LP T++ LI T F+++ ++ R L G+ F + +++ VATD HRL Sbjct: 121 RLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIKAVATDSHRL 179 Query: 178 AVCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + I S+I+P K + EL +++ D ++V +G + IR + F ++L Sbjct: 180 SQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRL 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGV--RLYVSENQLKIT 293 ++G +PD R+LP ++ Q +RA++L++ + V L V++ + ++ Sbjct: 240 LEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVADQTVLVS 299 Query: 294 ANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 N+PE + EE + + +G ++ I FN Y+ L A ++V + T+S+ + Sbjct: 300 GNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVIINFTESLRPFTVVPN 359 Query: 353 ASQ-SAAYVVMPMR 365 ++ P+R Sbjct: 360 DQSVEFVQLITPIR 373 >UniRef50_A9FMJ3 DNA polymerase III beta subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FMJ3_SORC5 Length = 376 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 180/377 (47%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + ++ LL+ + + G + +P L N+LL + + TDL + + + Sbjct: 1 MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTGQ-THA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRS--RFSLSTLPAADFPN 118 G VPAR + + +P+G EG +++ S R++L LP ++FP Sbjct: 60 DIKTGGTVAVPARDLLERVKAMPDGPIQITTTEGAHTSLKAVGSPRRYTLPGLPGSEFPQ 119 Query: 119 LDDWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 L LP + LI T FS++ + R ++N LFE G+ +R V TDGHRL Sbjct: 120 LPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGDRVRMVTTDGHRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-----LRVQIGSNNIRAHVGDFIF 232 + + S + ++++P K + EL R+ + + + N ++ F Sbjct: 180 SKMEATVSGSSATATMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIAGMQF 239 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 + KLVD +FP Y++V+P ++ + A +A A+ +N++ GV+L ++ L+I Sbjct: 240 SVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPGTLRI 299 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 T+ +P+ + + V YSG E+ IGFN Y LDVL ++ E V + ++ + I Sbjct: 300 TSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASIDDEEVILGISGELDPAVIRPG 359 Query: 353 ---ASQSAAYVVMPMRL 366 QS V+MPMR+ Sbjct: 360 SESNQQSYVAVIMPMRI 376 >UniRef50_UPI0001C36FC0 DNA polymerase III subunit beta n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FC0 Length = 367 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 168/368 (45%), Gaps = 5/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L + + VS + + T+P L + ++V+ GT+ LTG +LEM + ++ Sbjct: 1 MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTIS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G V AR F + R + E + + + S + A++FP L Sbjct: 60 STEGEGEFVVSARLFSEFTRRMSGDEVTFDIDESMVINISCSATECSFPAMSASEFPELP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 F++ Q+T+K +I T ++ + + + L G LF+ E VA DG RLA+ Sbjct: 120 MVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDIENGSFNMVAIDGFRLAIR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + +VP+K ++E+ ++ D P + +I +G S+L++G Sbjct: 180 -GEMTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVISRLLEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR-GVRLYVSENQLKITANNPE 298 F +Y+ +P + + + R ++L ++K + +R V +KI+ Sbjct: 239 AFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKISCRTG- 297 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 + + + SG + IGFN +L+ L A + + VR+ ++ ++I +S Sbjct: 298 IGKINDAISADISGETVTIGFNNKLILEALRAAEGDKVRIRFNGAMKVIEILPLEGESFI 357 Query: 359 YVVMPMRL 366 ++VMP++L Sbjct: 358 FLVMPIQL 365 >UniRef50_C9RQU7 DNA polymerase III, beta subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU7_FIBSS Length = 373 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 99/372 (26%), Positives = 186/372 (50%), Gaps = 8/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+++ L LQ + + T+ IL N L++ L ++ TDL++ + +V V Sbjct: 1 MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVE-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR---SGRSRFSLSTLPAADFP 117 Q GA + ARK FD + L + + + + + LV+ S R + S+ A DFP Sbjct: 60 QGERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYLVKIQWSERGKASIIGFDANDFP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + ++ + + + L E T F+ + R LNG+ E + ++ VATDGHRL Sbjct: 120 PFPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVFLEAKDGKISMVATDGHRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 ++ + S+ VI+P K + ++ + GD+ + V+ + +I + G SKL Sbjct: 180 GRAAIDQEGAELSNGVIIPHKALQHIL-HMAKGDSTVEVRTSATHILFNTGSIQVISKLY 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +G +P YR V+P+ ++ +A + ++N + R +RL N L+++A +P Sbjct: 239 EGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILELSATDP 298 Query: 298 EQ-EEAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA-AS 354 + ++ E L +T++G IGFN ++ ++L K E V M + + + + IE + Sbjct: 299 DVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKSEEVIMKMNNPLGACIIEPVGEN 358 Query: 355 QSAAYVVMPMRL 366 + ++++MP L Sbjct: 359 MNFSFLLMPTHL 370 >UniRef50_C8W8K5 DNA polymerase III, beta subunit n=5 Tax=Coriobacteriaceae RepID=C8W8K5_ATOPD Length = 366 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 169/370 (45%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTV + L L VS +G TLPIL + L+ +G L L +DL + + ++A Sbjct: 1 MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G T V + +I + LP+ A I + + V RS F L+TL A D+ Sbjct: 60 NVEEEGETVVSGKVIQNIVKNLPDAA-ITFEGGERTLSVICQRSSFRLNTLSAHDWAQFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E LP + +++ + + R L G+ E +R VATD RLAVC Sbjct: 119 EFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRLVATDSFRLAVC 178 Query: 181 SMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S S+I+ + +++ M + + N + G+ S+ ++G Sbjct: 179 DSNTDTPAGESFSIIISGEVFHDVLSM-RSMTEKVLIGTTDNQVIFQFGNTTHISRKIEG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ--LKITANNP 297 FPDY+++LP + ++ + A R ++++ VR V + +K++A++P Sbjct: 238 HFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIALA-NPSVRFDVDADGKEVKLSASSP 296 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSVSSVQIEDAASQS 356 +Q E+ E ++ G + I N YV D +NA + +R+ L + + Sbjct: 297 DQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSKDLLRLELQGPSQPAIFKSNGKVN 356 Query: 357 AAYVVMPMRL 366 Y++MP+RL Sbjct: 357 YLYLLMPVRL 366 >UniRef50_C8XHU9 DNA polymerase III, beta subunit n=2 Tax=Actinomycetales RepID=C8XHU9_NAKMY Length = 408 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 109/410 (26%), Positives = 175/410 (42%), Gaps = 48/410 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V R+ L + V+ L RP +P+LG +LL+V+ TL++ G D E+ A + + Sbjct: 1 MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60 Query: 61 QPHE-----PG------ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLS 109 E PG V R +I R LP + + + G ++ + +G +RF+L Sbjct: 61 TLDELEPDAPGGPAGTDRVLVSGRLLAEITRSLPAKP-VDLAVLGPKVSIVAGSARFTLP 119 Query: 110 TLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRT 169 T+P D+P L T+ A + T + D L G+ E +G+ L Sbjct: 120 TMPVEDYPPLPQMP-AASGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEIDGDRLTL 178 Query: 170 VATDGHRLAVCSMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV 227 ATD RLAV + + S V+VP + + + + L G + V +G + Sbjct: 179 AATDRFRLAVRELGWHPDQENLSTAVLVPARTLADAAKTLGGAK-QVTVALGEGLLGLDA 237 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 GD T +L+D F YR +LP + +E L ++ R A+++ ++ +RL V E Sbjct: 238 GDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVT-DRGHHLRLQVGE 296 Query: 288 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 L +TA ++ AEE L G E+ I FN SY+LD L + + VR+ T Sbjct: 297 GALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHADTVRLSFTTPARPA 356 Query: 348 QIED-------------------------------AASQSAAYVVMPMRL 366 + + + Y+VMP RL Sbjct: 357 LLVPIVKSDEPAESAEAAAEAAATPDIDADGVGSDEDTPAYRYLVMPARL 406 >UniRef50_Q7VQU9 DNA polymerase III beta-subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VQU9_BLOFL Length = 367 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 234/367 (63%), Gaps = 1/367 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F VER + L++V + R LPIL ++LL V D L +T TDLE+E+VA + L Sbjct: 1 MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + + TVP KFF+IC+ LPE ++I + L+ R L+ SG S F LS LP DFP + Sbjct: 61 KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQENRFLISSGCSNFVLSILPVLDFPKVK 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++E T+PQ +K++I+ TQFSM +QD RYYLNG+ +TE + V+TDG+RL++C Sbjct: 121 KYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGICLKTEKNTISMVSTDGYRLSMC 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + LP SVI+PRKGV+E+ +L G +++Q+ +NNI + +++ SKL+D Sbjct: 181 EVTSKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIRSKLIDSE 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY+++ P E +LK A RA+ILSNEK R V Y++ NQLKIT +N ++E Sbjct: 241 FPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKITTDNFKEE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED-AASQSAAY 359 +EEIL + +S + I FNV Y+LDV+N + + ++ L ++VSSVQIE + Y Sbjct: 301 TSEEILKILFSYENISISFNVDYLLDVINVVDSQMLKFSLINTVSSVQIEGVPKYYGSIY 360 Query: 360 VVMPMRL 366 ++MP+++ Sbjct: 361 IIMPVKV 367 >UniRef50_C8P210 DNA polymerase III, beta subunit n=2 Tax=Erysipelotrichaceae RepID=C8P210_ERYRH Length = 372 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 172/371 (46%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 MKF ++++ K L V LPIL + ++ D L+L +D + + + Sbjct: 1 MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60 Query: 58 --ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + +E G + +R + R L ++G + ++ ++++ A Sbjct: 61 DENKLNVYEEGEVVLESRYILEAVRKLDSDFIDFEIIDGALTRISGNKAEYNINGSKAEL 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + EF +P + +I+ T F + + R G+ F+ +G + VATD + Sbjct: 121 YPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNFKADGNTMNCVATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA S+ + + ++ +P + E+ + + + + + + ++ +V + S+ Sbjct: 181 RLAKKSIDLPTPM-DFNICIPAVNLYEVSKTISDNKD-VHIAVSDKLVQFYVDSTLIQSR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG FPD R++P L + A R++ L ++ + V+L S + I++ Sbjct: 239 LIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEGVLISSK 298 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E +EEIL + Y G ++I F+ Y+++ L + K + V+++ + + +++ Sbjct: 299 SQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKTDTVKILFVGEMQAFILKNPED 358 Query: 355 QSAAYVVMPMR 365 S +V+P+R Sbjct: 359 DSIVQLVLPVR 369 >UniRef50_B1I1H5 DNA polymerase III, beta subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1H5_DESAP Length = 389 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 101/389 (25%), Positives = 167/389 (42%), Gaps = 26/389 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG-----TLSLTGTDLEMEMVA 55 M+F RE LL + V + + + L +L + G +SLTG+++++ + Sbjct: 1 MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAGEAGQQGVSLTGSNMDLTIRR 60 Query: 56 RVALVQPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAA 114 + GA +PAR+ +I R LP+ I + + + GR+R L+ AA Sbjct: 61 IIP-AGVTVSGAVVLPARQLAEIVRRLPDVPVSITADHQKNSVELTYGRARALLNGYSAA 119 Query: 115 DFPNLDDW-------------QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE 161 +FP D ++ T P L ++ D+R G+L E Sbjct: 120 EFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFTGVLLE 179 Query: 162 TEGEELRTVATDGHRLAVCSMPIGQSLPS--HSVIVPRKGVIELMRMLDGGDNP-LRVQI 218 + E+R VATD HRLA+ + + VIV + + EL+R+L + V I Sbjct: 180 IDEGEIRAVATDTHRLAMHRVDYEGEPENRKMQVIVSGRALGELVRVLSQAEEEQFEVTI 239 Query: 219 GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLE-AGCDLLKQAFARAAILSNEK 277 N I VG S+L+ G +PDYR+V+PK + LL Q RAA L+ + Sbjct: 240 AENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVERAATLAQDG 299 Query: 278 FRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVR 337 + L++ + L +TA + E E + V +G E+EI FN Y+ + L + + Sbjct: 300 SPVINLHLGQGLLGVTAQS-EAGSIHEEIPVELAGQELEISFNAKYLEEALRWCESTQLI 358 Query: 338 MMLTDSVSSVQIEDAASQS-AAYVVMPMR 365 + V I +V+P+R Sbjct: 359 LDFHGPVGPAIIRPLGDGDTYLALVLPVR 387 >UniRef50_C1D6W8 DnaN n=29 Tax=Betaproteobacteria RepID=C1D6W8_LARHH Length = 377 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 151/352 (42%), Positives = 221/352 (62%), Gaps = 2/352 (0%) Query: 1 MKF-TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 M+ +R+ LLKPLQ V+G + R TLPIL N+L++ + TL+ TDLE+++ Sbjct: 1 MQILQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPE 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 T A+KF DI R +P+ + + E R+ V++G+SRF+L +LPA DFP L Sbjct: 61 PIAGPDFRLTTSAKKFSDILRAIPDRTTVTLDHEDGRLTVKAGKSRFNLQSLPADDFPLL 120 Query: 120 DD-WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 ++ F LPQ K L+ Q++MA QD+RYYLNG+L T+G +++ VATDGHRLA Sbjct: 121 TQSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKLVATDGHRLA 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 M + LP+ VI+PRK + EL ++L D+ + + + +N +R G + SK+VD Sbjct: 181 FAQMTLDTPLPAAEVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVIVSKVVD 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FPDY RV+P + DK G L+QA ARAAIL+NEKFRGVRL + +L+I NN E Sbjct: 241 GKFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRIQCNNSE 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 QEEAEE L++ Y G+ +EIGFN++Y+ DVL AL + +++ D+ S + Sbjct: 301 QEEAEEELEIAYGGSGLEIGFNITYLQDVLAALHVDTLQLAFGDANRSALVT 352 >UniRef50_C4WNF5 DNA polymerase III, beta subunit n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WNF5_9RHIZ Length = 351 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 182/368 (49%), Gaps = 21/368 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +++R L L V+ + R ++PIL N+LL V DG L LTGTDL++E+ + ++ Sbjct: 2 MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQ--LEGERMLVRSGRSRFSLSTLPAADFPN 118 H G+ TVP + DI + + + + G R+ V SGRSR+ L LPA DFP+ Sbjct: 62 DCH-SGSATVPGKMLADIAKRVTGDITLELDAASSGGRLTVASGRSRYKLDVLPAEDFPS 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + L + L+ +++ R +L+G+ F + L VATDGHRL Sbjct: 121 FSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEGRLVAVATDGHRLV 177 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + VI+P K V L + +++ + +R G + TSKL++ Sbjct: 178 RNYG--DEGDTEYGVILPSKLVAMLPK------GVIKLSLSQTKVRIEAGGTVITSKLIE 229 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FPD+ R++P L L A R + ++ + R V+L V+ + L ++ + Sbjct: 230 GTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEVA-DVLCLSIAD-- 286 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +A++ ++ G + IGFN Y+ D+L A+ ++V +D +S + + Sbjct: 287 --KAQDEIEGELDGEPLTIGFNPKYLQDMLGAVDEKDVCFAFSDGMSPAVLTGQG--NWT 342 Query: 359 YVVMPMRL 366 VVMP+R+ Sbjct: 343 GVVMPLRV 350 >UniRef50_Q0AK26 DNA polymerase III, beta subunit n=20 Tax=Nitrosomonadaceae RepID=Q0AK26_NITEC Length = 373 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 145/372 (38%), Positives = 212/372 (56%), Gaps = 7/372 (1%) Query: 1 MKFTV-EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL 59 MK T+ +R+ L KPLQ VSG + R TLPIL N+L+ + DG L+L TDLE+E+ A + Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 60 VQPHEPGAT--TVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + G+ TV RK DI R LP G+ + + R+ + SG+SRFSL LPA DFP Sbjct: 61 PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRLQIVSGKSRFSLQLLPAEDFP 120 Query: 118 NLDDWQS--EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 + + FTL Q +K+ ++ +MA QD+RYYLNG L E +L VATD H Sbjct: 121 RMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLIEDNKLMLVATDTH 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA+ S + I+PRK V+EL+R L+ D P+ V+I S I H D + SK Sbjct: 181 RLAITSFDLDGQFEKSETIIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSDAVLVSK 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL--SNEKFRGVRLYVSENQLKIT 293 ++ G+F D+RR +P+ + A R AI+ SN+ FR V L ++ +L I+ Sbjct: 241 VISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITNGKLNIS 300 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 A N EQEEA+E +++ YS ++ FN+ Y+++VLN L E++R + S++ I Sbjct: 301 AKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDSEHIRCSFENMQSAILITLPD 360 Query: 354 SQSAAYVVMPMR 365 +V+MPMR Sbjct: 361 DDQFNHVLMPMR 372 >UniRef50_D2QRF3 DNA polymerase III, beta subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRF3_9SPHI Length = 379 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 169/377 (44%), Gaps = 13/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA------DGTLSLTGTDLEMEMV 54 MKF V LLK LQ ++G + P +PIL N L ++ GTL++T +DL+ M Sbjct: 1 MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPA 113 ++ V+ +E G+ +PA+ D R LPE + + E + + R+ LS Sbjct: 61 TQIP-VEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTEILTDNGRYKLSGENP 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 DFP L + + + I T F+ + D+R + G+L + + VATD Sbjct: 120 IDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATFVATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 GHRL + S S+I+PRK + L L P+ + N G Sbjct: 180 GHRLIRYRRTDLNASASTSIIIPRKALQLLKASLPEN-VPVTAEFSQANASFTFGPTQLI 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 +L+D RFPDY +P N + G L + R I +N +RL + N L I+ Sbjct: 239 CRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKANSLTIS 298 Query: 294 ANNPEQ-EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED- 351 A + + EA E L Y G MEIGFN + +VL+ L + + + ++ + + Sbjct: 299 AEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSAKMISLEMSAPNRAGLLIPA 358 Query: 352 --AASQSAAYVVMPMRL 366 ++ +VMP+ L Sbjct: 359 DKEENEDILMLVMPVML 375 >UniRef50_A9KPP2 DNA polymerase III, beta subunit n=36 Tax=Bacteria RepID=A9KPP2_CLOPH Length = 370 Score = 310 bits (794), Expect = 7e-83, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 174/366 (47%), Gaps = 5/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ LL + + + T+PIL ++++V + T+ L D+E+ + V Sbjct: 1 MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIETIVKG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ + A+ F +I R LP+ E + +++F+++ A +FP L Sbjct: 60 SIISNGSVAINAKVFSEIIRKLPDNEVNVETDEKFMTTITCEKAKFTIAGKSAEEFPMLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + L Q T+K +I T FS++ + + G LFE G ELR V+ DGHR+++ Sbjct: 120 TIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRVVSLDGHRISIR 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + S ++VP K + E+ ++L G + + + ++ D + S+L++G Sbjct: 180 KVELKNSYAPKKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFDDTLVLSRLIEG 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPE 298 + ++L + + ++ RA +L E + + + + + +L++ N Sbjct: 240 EYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIEDKKLELKI-NTS 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 +E +D+ G ++ IGFN +++D L + E V + L + + I+D +S Sbjct: 299 IGTMDEDIDIEKEGKDILIGFNPKFLIDALRVIDDEEVEIYLINPKAPCFIKDKE-ESYI 357 Query: 359 YVVMPM 364 Y+++P+ Sbjct: 358 YLILPV 363 >UniRef50_A0LLR4 DNA polymerase III, beta subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLR4_SYNFM Length = 369 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 108/369 (29%), Positives = 186/369 (50%), Gaps = 7/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-LSLTGTDLEMEMVARVAL 59 MK +E+ +L++ LQ+V + ++P+L N+L+ ++ + + TDLE+ + + Sbjct: 1 MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQ-TG 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 Q PG++TV ARK F+I R LP+ + L +M + SGR+RF LST+P DFP L Sbjct: 60 GQVETPGSSTVSARKLFEIVRELPQPEVLLEGLPNNKMQILSGRARFELSTIPGEDFPQL 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEELRTVATDGHRLA 178 + ++ + A +KR + T S+ + + + G + R V++DGHRL+ Sbjct: 120 NFYRETELVKVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNEDSYRFVSSDGHRLS 179 Query: 179 VCSMPIGQSLP---SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 C +P +I+PRKGV E++RML + + + + + + + Sbjct: 180 YCEVPKEAFGTLDIREGLIIPRKGVQEILRML-EKEEEVVLGVHEKYVVLRTPSTFLSVQ 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+D FP+Y+ ++P+ + + A R++ILSN +R VR +++ L++ A Sbjct: 239 LLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKGVLELEAG 298 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 NPE A E LDV Y G + + FN+ Y+L+ + AL VR D + Sbjct: 299 NPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWVDQFHGGVFVGSEDP 358 Query: 356 SAAYVVMPM 364 +VMPM Sbjct: 359 GFLSLVMPM 367 >UniRef50_C6I687 DNA polymerase subunit III beta n=20 Tax=Bacteria RepID=C6I687_9BACE Length = 374 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 167/359 (46%), Gaps = 3/359 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V L LQ VS + + LPIL L Q+ DGTLS+T +D E MV V + Sbjct: 1 MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G V A+ D + +PE ++ + + V+ ++SL A +FP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPEQPLTFDIKPDTYEITVQYQNGKYSLMGQNADEFPQS 120 Query: 120 DDW-QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + V + + I + F+ A ++R +NG+ F+ E++ VA+DGH+L Sbjct: 121 ATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITMVASDGHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + + I+P+K L +L + ++ N + + +L++ Sbjct: 181 RCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMVCRLIE 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GR+P+Y V+P+N + L A R +I S++ ++L + ENQ+ ++A + + Sbjct: 241 GRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVSAQDID 300 Query: 299 QE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 AEE Y+GA M IGF ++++D+LN + + V + L D + I + Sbjct: 301 FSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVVIELADPSRAGVIIPVEQEE 359 >UniRef50_A7HMB7 DNA polymerase III, beta subunit n=3 Tax=Thermotogaceae RepID=A7HMB7_FERNB Length = 367 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 185/366 (50%), Gaps = 4/366 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KFTV + + K + S +G R PIL LL + +G +++ TDL+ ++++V + + Sbjct: 3 KFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVGE 62 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTL-PAADFPNLD 120 A V A DI R LPE I + ++LVRSG+++++++T+ FP +D Sbjct: 63 YEGNDAFAVDAELVDDIVRNLPEDEFI-FEYSNGKLLVRSGKAKYNITTVSDIERFPIVD 121 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +S ++F++ + ++ +++ F + + LNG+ +E G LR VA+DG+RL + Sbjct: 122 TDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRLVASDGYRLGLA 181 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSKLVDG 239 + I+ K + EL ++L P+ + + + + GD + V+ Sbjct: 182 EQKLNLENE-FDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTTIVRTVEE 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPDY+RVLPK + D +A R ++S V+L ++++ +++T+ + + Sbjct: 241 TFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMELTSQSSDF 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA E + +T G ++ + FN ++ + L + + + D++S +QI Y Sbjct: 301 GEAVESIPITKDGEDLIVNFNPKFLNEPLKHIDEKEIEFNFVDNLSPLQINPRNVGGYIY 360 Query: 360 VVMPMR 365 +V+P+R Sbjct: 361 IVLPVR 366 >UniRef50_B3DWG7 DNA polymerase sliding clamp subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWG7_METI4 Length = 371 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 171/373 (45%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF+VE++ + L + + R TLPIL ++LL L TDL+ + + Sbjct: 1 MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELT- 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 E G TT+PAR+ I R L + + S RS F L+ LP D+P Sbjct: 60 ANVEEEGTTTLPARRLLTIVRELDSDQLSWKTNSNHQTTLSSDRSFFQLNGLPDDDYPKF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + E ++ Q +++++ +++MA + R LNG F + TDG RLA Sbjct: 120 FPERREEGLSISQGKIRKMLRMVEYAMA-DESRPALNGAWFSIKSGRFEVAVTDGKRLAY 178 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + IVP K V+E+ R+++ D L++ + SN I + + +F SKL +G Sbjct: 179 TFEEVENESFEAEGIVPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNILFFSKLTEG 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR--GVRLYV-SENQLKITANN 296 ++P++++V+PK + + A R + ++ V L N+L ++ Sbjct: 239 KYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGTNELVLSCQA 298 Query: 297 PEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV---SSVQIEDA 352 PE +A E + + + G I FN Y+++ L ++ E+V + + + I Sbjct: 299 PEIGQARETISLKAFQGEAFSIPFNPLYLIEPLREMEKEDVILEFVNPSTKGNPCLIT-- 356 Query: 353 ASQSAAYVVMPMR 365 + YV+MP++ Sbjct: 357 EGTNFVYVLMPIK 369 >UniRef50_C3LH37 DNA polymerase III, beta subunit n=48 Tax=Bacillus cereus group RepID=C3LH37_BACAC Length = 376 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 177/376 (47%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V +H + L VS + + +PIL + + ++L ++ + + + Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 -------QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + G VPA+ F +I + +P I + + ++SG +L+ PA Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIK-SKNEQTITIQSGEITLNLNGFPA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +FPN+ E + + + T F++A + R+ L G+ E + +L ATD Sbjct: 120 NEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIELDHNKLICAATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ I ++ + + IVP + EL+++++ + + + ++I G Sbjct: 180 SHRLAIRETLISTNMKA-NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLY 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYV-SENQLK 291 S+L++G++P+ ++P + + Q R+++L++E V L + +E+ ++ Sbjct: 239 SRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQ 298 Query: 292 ITANNPEQEEAEE--ILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 I++N + + E +DV ++ I F+ ++LD L A+K E V + + S+ + I Sbjct: 299 ISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETVTLSFSGSMRPILI 358 Query: 350 EDAASQSAAYVVMPMR 365 E +A +++ P+R Sbjct: 359 EAGTQSAAIHLISPVR 374 >UniRef50_Q0RUQ2 DNA polymerase III, beta chain n=25 Tax=root RepID=Q0RUQ2_FRAAA Length = 413 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 169/394 (42%), Gaps = 32/394 (8%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPT--LPILGNLLLQVADGTLSLTGTDLEMEMVARVA 58 MKF VER+ + + + L RPT L +L LLL L + D E+ V Sbjct: 22 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G V + +I R LP + + ++G R+++ G +RF+L LP D+P Sbjct: 82 -ATVSEEGRALVNGKLLAEITRALPAAP-VDLGIDGTRLVITCGNARFALPMLPVDDYPA 139 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 L V + + + + D L G+ E EG+ L ATD +RLA Sbjct: 140 LPAMPP-VTGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAATDRYRLA 198 Query: 179 VCSMPIGQSLPSHS---------VIVPRKGVIELMRMLDGGDNPLRVQIG-----SNNIR 224 V S+ + +VP + +++ + L G + + +G Sbjct: 199 VRSLKWRPDDSAGEGDAAAPVTVALVPARTLLDTAKSLSGSGVEVSIALGTGPSGETLAG 258 Query: 225 AHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 T++L++G+FP +R++LP + + L++A R A+++ K V+L Sbjct: 259 FAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVA-AKTAPVQLS 317 Query: 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD-- 342 S + L + A + +A E L VTY G E+ + FN SY+LD L AL+ + VR+ Sbjct: 318 FSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVRIGFASAE 377 Query: 343 -----SVSSVQIEDAASQ-----SAAYVVMPMRL 366 + + A Y++MP+RL Sbjct: 378 DPAVAANKPAILTGKADDDGEVPDYRYLLMPIRL 411 >UniRef50_D2RMT4 DNA polymerase III, beta subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMT4_ACIFE Length = 375 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 164/374 (43%), Gaps = 9/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F+ E + L + + V + PI + + TL L D M+ + V Sbjct: 1 MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNTLQLIAMD-NTYMMNKKLDV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQL--EGERMLVRSGRSR--FSLSTLPAADF 116 E G +PA+ D+ + VQ + M +++ ++R + + + ++ Sbjct: 60 NGEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMDPEEY 119 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + Q + LP+ M +LI T ++ + R G+ E G+ L V T+ HR Sbjct: 120 PAMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQHLTAVGTNTHR 179 Query: 177 LAVCSMPIGQ-SLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTS 234 LA+ + + + S+++P + + E+ L+G P+ + + I A VG S Sbjct: 180 LAIKEVELPEGDDSEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGSLTIIS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L++G+FPDY+R +P + +++A R ++ S + VRL + + + +++ Sbjct: 240 SLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADGITLSS 299 Query: 295 NNPEQEEAEEILDVTYSGA--EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 + + +EI+ G + I FN Y+ D + V + S+S ++ Sbjct: 300 AVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGTDRVSLETNQSLSPARLMPE 359 Query: 353 ASQSAAYVVMPMRL 366 +S Y++ P+R+ Sbjct: 360 GDESYTYILTPVRV 373 >UniRef50_C3PE73 DNA polymerase III, beta subunit n=12 Tax=Corynebacterium RepID=C3PE73_CORA7 Length = 444 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 95/390 (24%), Positives = 157/390 (40%), Gaps = 31/390 (7%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V ++ L + V+ L + T P+L +L+ D L TG D E+ R+A + Sbjct: 58 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGM-V 116 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 EPG V + DI LP EI + E ++L+ G SRF L +P D+P L Sbjct: 117 DEPGRIAVAGKLLSDIVASLP-NKEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQLPVL 175 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 EV T+ I + D L G+ + G + ATD RLA+ + Sbjct: 176 P-EVTGTINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMTATDRFRLAMRTF 234 Query: 183 PIGQSLPSHSV--IVPRKGVIELMRMLDGG-DNPLRVQIG-------SNNIRAHVGDFIF 232 +VP K + E R LD + P+ + +G H + Sbjct: 235 EWEPVSSDVQAKLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHADNRET 294 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 T++++D FP+ +LPK L++A R ++L+ ++ +R+ SE ++ + Sbjct: 295 TTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEGEVTL 353 Query: 293 TANNPEQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 A + A E L ++G + I FN SY+ D L + V T+ + Sbjct: 354 -AAGADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTNRVVFGFTEPSRPAIMIP 412 Query: 352 AASQ---------------SAAYVVMPMRL 366 + Y++MP+RL Sbjct: 413 EPEELPAANEDGSFPTPETDFTYLLMPVRL 442 >UniRef50_D2MMX4 DNA polymerase III, beta subunit n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX4_9FIRM Length = 373 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 171/371 (46%), Gaps = 7/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 MKF++++ + L ++S + P L + ++V +L LT +D ++ + ++ Sbjct: 1 MKFSIKKNPFVTALSELSHAVSTNSPQPSLRGIKIEVKVDSLVLTSSDADISIQKKIISD 60 Query: 58 --ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + E G + A+ +I R L ++G + ++ F ++ + Sbjct: 61 EENDLNVQEEGHLLIEAKYLLEIVRKLDSDHIFVESIDGTYTQFKGHQALFKINGMAVHQ 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P +D + +E L + T LIE T F+ + Q+++ L G+ FE + +L ATD + Sbjct: 121 YPAIDFNKPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNNQLVCTATDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMR-MLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RLA + + S ++ +P K + ++ +L + + + I+ + + IF S Sbjct: 181 RLARKVVDLD-SQDQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRIDNMIFQS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +++DG +P +++P LE L +A R + L +E + RL + +Q +T+ Sbjct: 240 RILDGDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLINDQAILTS 299 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E E+ E L + G ++I F+ SYV++ L L E V + + + Sbjct: 300 RSQEIGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVLVQFKGMMKPFILTSIDD 359 Query: 355 QSAAYVVMPMR 365 S +V+P++ Sbjct: 360 PSTIQLVLPLK 370 >UniRef50_A5KS03 DNA polymerase III, beta subunit n=6 Tax=candidate division TM7 RepID=A5KS03_9BACT Length = 366 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 172/370 (46%), Gaps = 10/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK TV +E+L K L V G+ LPIL N+LL+ + L + T+LE+ + + Sbjct: 1 MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHI-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + GA TVPAR + LP+G + + +EG + + +G +++ + A +FP L Sbjct: 60 KVAQNGAITVPARLMAEFISNLPKG-NVELSVEGAHLHIAAGAYSSTINGMEAEEFPELP 118 Query: 121 DWQSEVEF--TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 +P MKR + T + + R +L G+ + +L ATDG+RL+ Sbjct: 119 TINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFAATDGYRLS 178 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 IG IVP + +++R+L + + + +R +GD TS+L+D Sbjct: 179 --ERKIGAMKEDLKXIVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVTSRLID 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK--ITANN 296 G+F DYR+++PK D + + A++ + E + L + + I + Sbjct: 237 GQFVDYRQLIPKGADIASVLRKEEFSRITKIASLFARESGGSITLKTDKEKGTLAIHSIA 296 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + E + S A+ ++ N Y+L+ L A+ ++ + +S ++ ++ Sbjct: 297 SQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSSITFRFSGKLSPCRLTATDDEA 355 Query: 357 -AAYVVMPMR 365 +++MP++ Sbjct: 356 TYQHIIMPLK 365 >UniRef50_A9B4J2 DNA polymerase III, beta subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4J2_HERA2 Length = 381 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 170/381 (44%), Gaps = 16/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +E+L + L + GR +LP+L N+LL G L L G +LE+ + A V Sbjct: 1 MRLACLQENLKRGLALAGHAVAGRSSLPVLANILLATESGRLKLAGNNLEIGITALV-GA 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA-EIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + E GA T+PA+ D+ LP E+ V + + V ++ ++ + A +FP + Sbjct: 60 KVDEDGAITIPAKLLSDLVGNLPNDTVELEVDPRTQTLTVTCRGTKANIKGIDADEFPAM 119 Query: 120 DDWQSEVEFT-LPQATMKRLIEATQFSMAHQDVRY--YLNGMLFETEGEELRTVATDGHR 176 +E LP +++++ + + A ++ L G+L G + A DG+R Sbjct: 120 AVPGNEPVLAYLPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATFAAIDGYR 179 Query: 177 LAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIFT 233 LAV ++ + + +++P + + EL R L + P+ + I SN + H F Sbjct: 180 LAVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTVDFV 239 Query: 234 SKLVDGRFPDYRRVLP--KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS----- 286 S+++DG+FPDY R +P N +A R A+ S V L + Sbjct: 240 SRVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERGDGS 299 Query: 287 -ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 +L + AN E E+ E + G + ++ NV Y+ + L A+ + V + S Sbjct: 300 EPGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDTDQVALETQTPNS 359 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 ++VMPMR+ Sbjct: 360 PGVFRPIGGDEYLHLVMPMRI 380 >UniRef50_C3RP22 DNA polymerase III subunit beta n=4 Tax=Bacteria RepID=C3RP22_9MOLU Length = 369 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 179/369 (48%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F ++R LL L + + + R LP+L + + D L LTG+D ++ + ++ Sbjct: 1 MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60 Query: 61 Q---PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + ++ G + +R DI R + L+G + S+F L+ D+P Sbjct: 61 EDLTIYQTGGVVLNSRYILDIVRKIDSDEIKIEILDGALTRISGATSKFDLNGTDVLDYP 120 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +D ++ + L ++K +I T+F+ + ++ + L G+ F+ +L ATD +RL Sbjct: 121 RIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINFKAGNRQLECTATDSYRL 180 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 A + + + + ++ +P+K + E+ ++++ D + + + + + I ++L+ Sbjct: 181 AKKIVSLDEDVT-FNITIPQKSLDEISKIIER-DEMIEMYVSDRKVLYVFDNNIIQTRLI 238 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPD R++P D L+ L A R ++L+NE+ ++L +S+ ++ +++ Sbjct: 239 DGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKVVLSSYMQ 298 Query: 298 EQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E EEILD + Y G + I F+ Y D + A ++++ T + I+D Sbjct: 299 EIGSVEEILDKSFYKGTPISISFSSKYATDAIRAFNEPKIKILFTGEMKPFIIKDFEKDD 358 Query: 357 AAYVVMPMR 365 +V+P+R Sbjct: 359 VIQLVLPVR 367 >UniRef50_Q0B0Z3 DNA polymerase III, beta subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0Z3_SYNWW Length = 409 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 104/377 (27%), Positives = 193/377 (51%), Gaps = 12/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG-TLSLTGTDLEMEMVARVAL 59 MKF +E++ LL V + +P+L LLL+ L++T TD+E+ + A A Sbjct: 30 MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRASTAK 89 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ E G+ V A FFD + LPE I + E ++ ++ GRS ++T ++P Sbjct: 90 IEVIEKGSVLVNAHYFFDFIKLLPEVPIFIELNQETAQLDIKYGRSSGFINTYRDYEYPA 149 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRL 177 L + + FT+ Q +K ++ T F+ A R G+LF+ EG L VA+D HRL Sbjct: 150 LPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDLGEGGNLNVVASDTHRL 209 Query: 178 AVCSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A S I P S I+P + E++R+LD + + + +NN+ + +F+ S+L Sbjct: 210 ARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFLLLSRL 269 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGV---RLYVSENQLKIT 293 ++G++P+Y +V+P++ ++ +L RA ++ ++ + R EN++++ Sbjct: 270 IEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEENEVEVN 329 Query: 294 ANNPEQEEAEEILDVT--YSGA-EMEIGFNVSYVLDVLNALKCE--NVRMMLTDSVSSVQ 348 + + E E++++ G E+ I FN +Y LDV+ L+ E + + L+ + V Sbjct: 330 SYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGEAKELLINLSSILGPVM 389 Query: 349 IEDAASQSAAYVVMPMR 365 I + + YV++P+R Sbjct: 390 IVNPQKDNYLYVLVPLR 406 >UniRef50_Q1RIS7 DNA polymerase III subunit beta n=15 Tax=Rickettsia RepID=DPO3B_RICBR Length = 379 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 14/378 (3%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 K VE + L++ L S + R + L N+ L DG L L+ T++++ + ++ VQ Sbjct: 3 KVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKI-GVQ 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G TV + DI + LP+ L + + RF+L TLP FP +D+ Sbjct: 62 VVSEGELTVSTKTLNDIVKKLPDSELTLTDLGTTGLEITGKNCRFNLFTLPVESFPVMDN 121 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 E F + A ++IE+T+FS++ + RY LNG+ + E +TDGHRL+V S Sbjct: 122 INPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVKDSEFYAASTDGHRLSVSS 181 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDN---PLRVQIGSNNIRAHV-GDFIFTSKLV 237 + + + + VI+P+K E+++++ N + + + SN I+ + I SKL+ Sbjct: 182 VVLAEKIEDFGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIMLSKLI 241 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG FPDY +P+N L + R AI++ EKFR V+L +S L+I+A Sbjct: 242 DGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEISAIGE 301 Query: 298 EQEEAEEILD--------VTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 + A+E+++ YSG ++IGFN Y+ DVL A+K + V + + + V Sbjct: 302 ARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFSSVSAPVL 361 Query: 349 IEDAASQSAAYVVMPMRL 366 I+ S +VVMP+++ Sbjct: 362 IKFPESPKDIFVVMPVKV 379 >UniRef50_B7CCH7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH7_9FIRM Length = 372 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 176/371 (47%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 M F+++R++ L VS + LP L + + + D +++LTG+D + + + Sbjct: 1 MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISIRTVIVPG 60 Query: 58 --ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 + E G+ + ++ +I R L ++ + + S +F+L+ + + + Sbjct: 61 ELNNLDIEEEGSIIIDSKYLLEIVRKLDCKNIEIEVIDYSLVRISSDNGQFNLNGIRSNE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P++D Q + F L +K ++ T F+ + +D R L G+ F ++G L TD + Sbjct: 121 YPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNFNSQGNMLYCSGTDSY 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RLA ++ + S ++ +P K + E++R + D+ + + S + I ++ Sbjct: 181 RLARKTIELDSSQ-DFNITIPSKSLTEVVRSVSD-DDTIDIFADSKKAQFVFDKTIIQTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG FPD +R++P + + + R + N+K ++L + + + Sbjct: 239 LIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQETHVKTY 298 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + E ++E+L Y G E+ + N +Y+LD + AL CE V + + + +++ + Sbjct: 299 SSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVLIEFSGFMKPIKVSNPED 358 Query: 355 QSAAYVVMPMR 365 S +++P+R Sbjct: 359 ASVLMILVPIR 369 >UniRef50_O83048 DNA polymerase III subunit beta n=4 Tax=Treponema RepID=DPO3B_TREPA Length = 371 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 173/372 (46%), Gaps = 10/372 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK E+E LK + + + I N+LL L++ TD ++ + V Sbjct: 1 MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR--SGRSRFSLSTLPAADFPN 118 G TTV K ++ LP EI + L E++++ + + F L TL FP Sbjct: 60 NVLAEGTTTVFCDKLVNVVSALP-TKEIELTLCEEQLVITPPNKKISFQLRTLSHESFPC 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + V +P + ++ +I T F+++ R+++NG+ + + + V+TDG RLA Sbjct: 119 FPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGVHVDFQYGNIICVSTDGKRLA 178 Query: 179 VCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S S S VIVP K + + R L + + + I S ++ G + F+S L+ Sbjct: 179 YIEKKGESSPQSFSGVIVPTKILGIVNRKLTP-EGSVTLCITSQHVYFFFGGYKFSSVLI 237 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA--- 294 +G+FP+Y+RV+P + ++ G L +A R ++L +K + + + + L +++ Sbjct: 238 EGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSSKAH 297 Query: 295 -NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 E +A+E + Y+G I N Y+ + L + V++ TD ++ + Sbjct: 298 TQENEIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSKEVQVEFTDPAKALTLRAVP 357 Query: 354 SQSAAYVVMPMR 365 + +++MPM+ Sbjct: 358 NTDCFHIIMPMQ 369 >UniRef50_B7H828 DNA polymerase III, beta subunit n=20 Tax=Bacteria RepID=B7H828_BACC4 Length = 376 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 78/376 (20%), Positives = 176/376 (46%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL- 59 M+F V + + L +V+ + + +PIL + + ++L ++ + + + + Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 60 ------VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + G VPA+ F +I + +P I + + ++S SL+ PA Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIK-SKNEQLITIQSEEIILSLNGFPA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 +FPN+ + E + + + + T F++A + R L G+ E +L ATD Sbjct: 120 DEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNNKLICAATD 179 Query: 174 GHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 HRLA+ + + + + IVP + EL+++++ + + + ++I +G Sbjct: 180 SHRLAIRETLLSSDVKA-NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTLGTTTLY 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLY-VSENQLK 291 S+L++G++P+ ++P + + + Q R+++L++E V L ++E+ +K Sbjct: 239 SRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLASEWANNNVNLEIINESTIK 298 Query: 292 ITANNPEQEEAEEI--LDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 I++N + + E +D ++ I F+ +++D L A+K E + + S+ + I Sbjct: 299 ISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEEKITLSFGGSMRPILI 358 Query: 350 EDAASQSAAYVVMPMR 365 E +A +++ P+R Sbjct: 359 EAGEQSAAVHLISPVR 374 >UniRef50_O67725 DNA polymerase III subunit beta n=2 Tax=Aquificaceae RepID=DPO3B_AQUAE Length = 363 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 173/369 (46%), Gaps = 9/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V+RE L + L++ + LPIL N LL + L + TDLE +V V Sbjct: 1 MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E V ++K +DI + L A + + EGE++++ G+S + L T PA DFP Sbjct: 61 VEEEG-EVCVHSQKLYDIVKNL-NSAYVYLHTEGEKLVITGGKSTYKLPTAPAEDFPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E TL + IE ++++A ++ L GM + + V +DGHRLA+ Sbjct: 119 EIVEGGE-TLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYEDRIHFVGSDGHRLALY 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDG-GDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S +++PRK + L +++ G D + + ++ +L++G Sbjct: 178 E---PLGEFSKELLIPRKSLKVLKKLITGIEDVNIEKSEDESFAYFSTPEWKLAVRLLEG 234 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 FPDY V+P+ + + + + R LS K V++ +SEN +PE Sbjct: 235 EFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFEFADPEF 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS--A 357 EA E ++V Y+G EIGFN Y+++ L+A E V T ++ +E + Sbjct: 295 GEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDSERVWFKFTTPDTATLLEAEDYEKEPY 354 Query: 358 AYVVMPMRL 366 ++MPMR+ Sbjct: 355 KCIIMPMRV 363 >UniRef50_C4DK83 DNA polymerase III, beta subunit n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DK83_9ACTO Length = 380 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 20/381 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V+R+ L + + L RP++P+L L+ V+DG L+++G D E+ + V Sbjct: 1 MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVSSQVTLP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ V + +I + LP + V EG + + G +RF+L T+P D+P+L Sbjct: 60 TSDASGSALVSGKLLAEIVKALPAKP-VDVAAEGSHVEITCGSARFTLPTMPVEDYPSLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D E T+ A + T + D + G+ E G L +ATD +R+A+ Sbjct: 119 DMP-EAVGTIDAAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLALLATDRYRMAIR 177 Query: 181 SMPIGQSLPSHSV--IVPRKGVIELMRMLDGGDNPLRVQIGS------NNIRAHVGDFIF 232 +P +V ++P K + + + L + + + + Sbjct: 178 DLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVGFAADGRRT 237 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 TS+++DG+ P R ++P L L R ++++ E+ +RL V + L + Sbjct: 238 TSRVLDGQLPPLRSLIPVTYAAELRVNAAELASVARRVSLVT-ERNSPLRLNVDGDGLVV 296 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED- 351 A E A E +D YSG M++ FN Y+LD L+A+ T+ V ++ Sbjct: 297 EAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISAPVAVFSFTEPGKPVTLKGD 356 Query: 352 ---AASQ----SAAYVVMPMR 365 A +++ P+R Sbjct: 357 KANADDDGDFSGYTHLLQPLR 377 >UniRef50_A6C2Q1 DNA polymerase III, beta chain n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C2Q1_9PLAN Length = 376 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 181/374 (48%), Gaps = 12/374 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + R LL Q + + R +L L+ ADG +L+GTDLE+ + V Sbjct: 1 MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60 Query: 61 QPHEPGATTVPARKFFDICRGL-PEGAEIAVQLEGER----MLVRSGRSRFSLSTLPAAD 115 + PG + + I R + EI ++ + E +L+++G+S F LS ++ Sbjct: 61 EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 FP ++ + F +P + + +I T F+ + RY L G+LF+ EG++L ATDG Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDVEGDKLTLAATDGR 180 Query: 176 RLAVCSMPIG----QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 RLA+ ++ ++ ++P K + + + L G + +++ I +N++ G Sbjct: 181 RLAMVESACSYQGSEAYENNRPVIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKSGRST 240 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 +LV+GRFP YR V+P P ++ A +A I+++ + RGV S L Sbjct: 241 IFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSSGLLT 300 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSVSSVQIE 350 + + E++ + + + G ++ I F+V Y+ D L L ++R+ L DS S+ ++ Sbjct: 301 LKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAAHIRLQLIDSDSAAVLK 360 Query: 351 DAASQSAAYVVMPM 364 YV+MP+ Sbjct: 361 --TDDGYTYVIMPL 372 >UniRef50_Q04HR5 DNA polymerase III, beta subunit n=2 Tax=Oenococcus oeni RepID=Q04HR5_OENOB Length = 374 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 178/375 (47%), Gaps = 13/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V+R L L VS + G+ +PIL + + V++ ++L G++ E+ + + Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 Q------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 + EPG A F +I + L + + EG ++ + G S F+++ A Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSDK-VEISTEGSQIAIVGGSSDFTVAGQSAD 119 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 ++P L +P + + +I T +++ QD R L G+ F +++ V+TD Sbjct: 120 NYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIKAVSTDS 179 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HRL+ IG V+VP K +IEL +L+ DN L +Q + + +G+ F S Sbjct: 180 HRLSQRITKIGND-SQADVVVPSKALIELRALLENIDN-LNLQFDRSQLLVDLGETTFYS 237 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGV-RLYVSENQLKIT 293 +L++G++P R++P + L + RA++++++ V +S+++L ++ Sbjct: 238 RLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQDKLVLS 297 Query: 294 ANNPEQEEAEEILDVT-YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + E L + + G +++I FN +V D L+++ + T ++ I Sbjct: 298 TAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSIGESKLDFSFTTNLRPFVIRPN 357 Query: 353 A--SQSAAYVVMPMR 365 + ++ P+R Sbjct: 358 GASDNNKVQLITPVR 372 >UniRef50_A4XFI2 DNA polymerase III, beta subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFI2_CALS8 Length = 367 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 167/370 (45%), Gaps = 9/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V++ L + +V +L +L++ D + T D+ M+M Sbjct: 1 MRFVVDKSTLQDNISKVIPAAASTKVTSVLECVLIEAED-VVVFTTNDMRMQMQTEFQ-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E GA V A+ DI + LP G I + E + +R + F L TL DFP +D Sbjct: 59 EILERGAALVKAKLLSDIVKKLPSGD-IEIIREDNEVKIRCQKIEFRLPTLDPLDFPKMD 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + ++ F+ + + R G+LFE EG+ + V DGHRLA+C Sbjct: 118 RKPIDSFCEFAANEFEDAMDKVIFATSKDETRPTFTGVLFEREGDSVNLVGMDGHRLAIC 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + + S IVP + + ++ +++D + +RV N +G L+ G Sbjct: 178 KLKPIEVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIVTLISG 237 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF---RGVRLYVSENQLKITANN 296 RF DY+ V+P + D+L+ RA+I+S ++ + V VS ++ + + Sbjct: 238 RFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFRVMSYS 297 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 + EE + G ++ IGFNV Y LDVL L V + +T S ++ + Sbjct: 298 TD-GRYEEDVLCDVEGKDIRIGFNVKYFLDVLKVLDGG-VDIYITSLTSPSVVKQQGDEG 355 Query: 357 AAYVVMPMRL 366 Y+V+P+++ Sbjct: 356 YIYLVLPVKM 365 >UniRef50_Q6AQJ6 Probable DNA polymerase III, beta chain n=1 Tax=Desulfotalea psychrophila RepID=Q6AQJ6_DESPS Length = 376 Score = 296 bits (759), Expect = 8e-79, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 183/375 (48%), Gaps = 12/375 (3%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + TV ++ LL+ L + T+ IL N+L++ ++G L+LT TDLE+ + + + Sbjct: 4 QCTVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIK-AE 62 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 H G+ T+P++K F+I R + E +++++G+S ++L+ + + ++P + Sbjct: 63 IHGEGSLTLPSKKIFEIVRESGSEKISIEEKENSWVVIKAGQSTYNLAGMASDEYPEFPE 122 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFET----EGEELRTVATDGHR 176 + + + LIE FS+A++ + Y L +LFE + L+ +++DGHR Sbjct: 123 YDEDSFTVFESYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMISSDGHR 182 Query: 177 LAVCSMPIGQSLPSHSV----IVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 L++ + L + V ++P+KGV E + D D+ + V + + + Sbjct: 183 LSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKDS-IEVSFEHDKLILRNNQDVM 241 Query: 233 TSKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 L G FP Y+ ++ + LE + R + + + F ++L + ++ + Sbjct: 242 VVSLKTGEFPQYKAIVDAVQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQLAIDKDFMV 301 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 +++ N + A++ + YSG + +GFN Y +D L A++CE ++ + S S I Sbjct: 302 LSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYFIDTLQAMECEKIKAYINSSNSPCLINS 361 Query: 352 AASQSAAYVVMPMRL 366 ++MPM+L Sbjct: 362 DDDPGFTSIIMPMQL 376 >UniRef50_B5Y6P1 DNA polymerase III, beta subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6P1_COPPD Length = 361 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 182/367 (49%), Gaps = 7/367 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + +E L++ L+ V + + T P+L N+LL+ D L +TGTD++ + ++AL Sbjct: 1 MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIAL- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E TTVPA+ F D + P G+E+ +++ + + SG + LSTLP ++P L+ Sbjct: 60 EAAEELRTTVPAKFFSDFVKKAP-GSEVQLEVGENYLSISSGSASLKLSTLPPEEYPELE 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVR-YYLNGMLFETEGEELRTVATDGHRLAV 179 Q FT+ AT+K+ ++A + +++ ++R L G+L + L V TDGHRLA Sbjct: 119 VLQG-NTFTVDAATLKKAVDAVKKNVSKGELRNPVLEGILLDGSEGMLIAVGTDGHRLAA 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 C + + +P + ++ L + + G + + ++G Sbjct: 178 CKTDLQVTET---ACLPADVLSDVCDTLVNTGSTAYITFGDGEVAFENDVIYAVIRTLEG 234 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +FP +R V+PK + + + RA +L+ VRL + + L I+A PE Sbjct: 235 QFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSLTISAEVPEL 294 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E + V G +++I N +Y+ DVL+ + +NV LT + + I S++ Sbjct: 295 GSFVESIPVDKEGPDLKIACNYAYLQDVLSGIDEDNVVFGLTSPLHPIVIRPVESENYVG 354 Query: 360 VVMPMRL 366 +VMPM+L Sbjct: 355 LVMPMKL 361 >UniRef50_B1C8Z4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8Z4_9FIRM Length = 368 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M V+R LK L VS R L +LL+ D LSL T+ E+++ + Sbjct: 1 MNIKVDRNEFLKALITVSKATTLRNVGS-LEGILLESYDDVLSLYATNKEIQISTIID-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + +R DI R G E + + S+F+++ + FPN + Sbjct: 59 KVIREGKLLINSRILSDIVRSFDNGEVEIDADENNNIKLTCLNSKFNITAMDHRTFPNKE 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDV-RYYLNGMLFETEGEELRTVATDGHRLAV 179 + + ++ +I+ T F+ A D L G+L E E+++ VA DG R+A+ Sbjct: 119 VYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKFVAIDGFRMAI 178 Query: 180 CSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S + + +VP + EL ++L D+ + + I A++G S L+ Sbjct: 179 RSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLVSSLLQ 238 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANNP 297 G+F DY +LPK ++ + L A RAAI+S+E + + L+ ++N L +T+ + Sbjct: 239 GQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLLTSKSA 298 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EE +++ SG +++I FN YV+D L ++ E V + S S I+ +S Sbjct: 299 -YGNVEENININLSGEDLDISFNSRYVIDALKVIEDEKVILEFNSSNSPCLIKPVSSNKF 357 Query: 358 AYVVMPMRL 366 Y++MP+R+ Sbjct: 358 TYLIMPVRI 366 >UniRef50_P57127 DNA polymerase III subunit beta n=34 Tax=Buchnera aphidicola RepID=DPO3B_BUCAI Length = 366 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 155/362 (42%), Positives = 233/362 (64%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + L+K LQ++S L +LPIL N+L+ + +G LSLTGT+LE+E+VA + L Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 H G T+ RK DICR + I +QL +M + SG SR+ L+TLP FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNNNKMHIISGNSRYILTTLPYDSFPVHH 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D+ EF +P +K++IE QFSMA QDVRYYLNG+L E L VATDG+RL + Sbjct: 121 DFHHISEFFIPSDILKKMIEKIQFSMAKQDVRYYLNGILLEKTDRSLYAVATDGYRLGIS 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +++ S+++PRKGVIEL R+L+ P++V +G NNIR H+ D IFT++L++G+ Sbjct: 181 KFFLKENIIPFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQ 240 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +PDY+ VL +N + + LLKQ+ RAAILS+EKF GV +++ Q K+ ++N E+E Sbjct: 241 YPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEE 300 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 AE+ ++ Y+G ++I NV Y++++LN++ EN+ + L ++ +S+QIE S YV Sbjct: 301 IAEDRFNINYTGNTVKISINVYYIIEILNSITSENIFLFLNNANNSIQIEAENDASILYV 360 Query: 361 VM 362 VM Sbjct: 361 VM 362 >UniRef50_C2KY13 Possible DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KY13_9FIRM Length = 374 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 171/369 (46%), Gaps = 8/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ LL LQ V + + TL I+ +L+ +G + LTG + + + Sbjct: 1 MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIESICPG- 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGA---EIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 EPG + AR F +I + LP+ + E ++ +S F + +F Sbjct: 60 DILEPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDEFT 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +L + + + Q +++ +I T FS A + + G FE + A DGHR+ Sbjct: 120 SLPSVEKQEIVEISQLSLRNMINQTIFSTASGENNKKMTGEYFEIIDNQFSITALDGHRI 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGG-DNPLRVQIGSNNIRAHVGDFIFTSKL 236 A+ + +S + S IVP++ + EL +++ GG ++ + + ++ D I ++L Sbjct: 180 AIRKTELSESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTIVVTQL 239 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR-GVRLYVSENQLKITAN 295 V+G + R++L + + + + RA IL+ + + + L + + L + Sbjct: 240 VEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSLSLKIV 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + + + V G ++ IGFN +Y++D L ++ E V + T S S V I D + Sbjct: 300 S-DIGRMDAEMPVQQEGKDLLIGFNPTYLMDALQNIEEEEVDLYFTISRSPVFIRDQE-E 357 Query: 356 SAAYVVMPM 364 S Y+++P+ Sbjct: 358 SYNYMILPV 366 >UniRef50_A9D4N4 DNA polymerase III, beta chain protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4N4_9RHIZ Length = 385 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 17/380 (4%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQ-VADGTLSLTGTDLEM-EMVARVALV 60 T R LL ++ G + R T+P+L NLLL+ AD L ++GTDL++ VA Sbjct: 7 LTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGLRVSGTDLDVMTTVATGLDA 66 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 +P + T+PA DI R LP+ AE++++ +G +M + SGRSRF+L TLP AD+P L Sbjct: 67 EPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDGSGQMTLTSGRSRFNLQTLPGADWPRL 126 Query: 120 DDWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + F +P A + A F+++ ++ RYYLNG+ L TVATDGHRLA Sbjct: 127 QEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMHAIDNRLVTVATDGHRLA 186 Query: 179 VCSMP-----IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLR--VQIGSNNIRAHVGDFI 231 + + +I+PRK V + + L + + N I +G Sbjct: 187 RAVYSAAVGVMPAADAMPGIIIPRKTVGLVAKALAAAAKDATLAIAVSENMISFELGATR 246 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 SKL+DG FPDY RV+P L QA R +I+S+E+ R V++ + Sbjct: 247 IASKLIDGTFPDYERVIPIANPNSWRFDVAALLQATERVSIISSERGRAVKMAWGRESID 306 Query: 292 ITANNPEQEEAEEILDVTY-SGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 +T NP+ E ++ + V +G E+EIGFN Y+ D+L + ++ + L + E Sbjct: 307 LTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHM-SKSGSVHLNTGGDPARFE 365 Query: 351 D--AASQSA--AYVVMPMRL 366 A +V+MPMR+ Sbjct: 366 PVHADDDEIAMTFVLMPMRV 385 >UniRef50_C2BTM3 DNA polymerase III beta subunit n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BTM3_9ACTO Length = 380 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 153/378 (40%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + R+ L + + S + RP + +L + ++ + + + D E+ VA Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + EPG V + + R LP + E + + G + L + + ++P L Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKFATEDNYLHITCGSFKQKLIMMHSEEYPPL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + A I + + + L G+ E ++L +ATD +R+A+ Sbjct: 121 PQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPDKLYLLATDRYRMAL 179 Query: 180 CSMPIGQS-LPSHSVIVPRKGVIELMR-MLDGGDNPLRVQIGSNN---IRAHVGDFIFTS 234 MP ++V K + + + + GD + V +N I +FTS Sbjct: 180 KEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAANGRVFTS 239 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKIT 293 ++ DG +PD RR+ P+ + D + R AI+S+ + + L + QL+ Sbjct: 240 QINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSGQLEFL 299 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI---- 349 A N + A + + +G ++ + FN +L+ L A+ R+ D V I Sbjct: 300 AGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAIDEPYARLSFKDEAKPVVITGQK 359 Query: 350 --EDAASQSAAYVVMPMR 365 + + Y++MP+R Sbjct: 360 EETGEDNLTFRYLIMPIR 377 >UniRef50_Q21QE8 DNA polymerase III, beta subunit n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QE8_RHOFD Length = 378 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 202/375 (53%), Gaps = 10/375 (2%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVALV 60 K T + L LQ V+G + +L ILGN+LL +DG ++ GTDLE+E+ A + Sbjct: 4 KLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDGRITAVGTDLEVEVNATQHVG 63 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-ERMLVRSGRSRFSLSTLPAADFPNL 119 +TTV +RK DI + + + + E + +++ F LS LPA DFP + Sbjct: 64 SFTGALSTTVESRKLMDILQTMANDEPVTLASENPDHLVLTGANGTFKLSCLPADDFPRM 123 Query: 120 DDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + F + Q +K LIE T F+MA D+RYYL GM F EG L +DG R+A Sbjct: 124 EIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVVEGGRLTVCTSDGFRVA 183 Query: 179 VCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + S+P VI+PRK V+EL R+ D+ + VQ+ +N R G F +KLV Sbjct: 184 TDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQARIRFGALEFVTKLV 243 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSEN----QLKIT 293 +G+FPD R V+P++ D + L A RAA++ ++K GVR + + LK+ Sbjct: 244 EGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRFILDHDLISGHLKVE 303 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS--VQIED 351 ++N + E + + V YSG ++IGFNV Y+LD L ++ +++ + + ++ + Sbjct: 304 SSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLVLAFSHTLVPGAALMTL 363 Query: 352 AASQSAAYVVMPMRL 366 + Y++MPMR+ Sbjct: 364 PSDDHFKYILMPMRI 378 >UniRef50_B0MRG5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG5_9FIRM Length = 365 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 165/366 (45%), Gaps = 7/366 (1%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF+V++ +L L + + + L + L + L++TG DLE+ + + + V+ Sbjct: 3 KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTID-VE 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 G + +R DI R +P G + E ++ + +S+ + + ++P L + Sbjct: 62 GESDGVLVLNSRLICDIVRKMPSGVIRFDEYEPLKLNLMCEDITYSIMGINSEEYPVLPE 121 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 F + + +K +I T +++A D + L G FE + EL ++ DG R+A+ Sbjct: 122 LSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISVDGIRIAIRK 181 Query: 182 MPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSKLVDGR 240 + +VP K + EL+R+L ++ + V + N + + S+L++G Sbjct: 182 ESLL--HEDFDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSRLLEGD 239 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPEQ 299 F +Y +++ + L + R +L N+K V S+N L++ Sbjct: 240 FFNYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFCETA-I 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 + ++ + YSG E I FN Y+LD L C+ V+ + ++++I S + Sbjct: 299 GKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFV-QNTALKIVPLEGDSFTF 357 Query: 360 VVMPMR 365 +V P+R Sbjct: 358 IVSPVR 363 >UniRef50_A6CJV3 DNA polymerase III subunit beta n=2 Tax=Bacillus RepID=A6CJV3_9BACI Length = 374 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 175/374 (46%), Gaps = 11/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ + L K L V + G P++P+L + ++ L LTG D ++ + + L Sbjct: 1 MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60 Query: 61 Q-----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 Q PG VP R F ++ + +P+ I ++ +++ + SG +LS L D Sbjct: 61 QADAGRIIAPGKLVVPVRYFHNLIKKMPDDTFIKIKKFNKQVKITSGEIETTLSLLNEED 120 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P + + + + +I+ TQF+++ D R L G+ +E +L +AT+ Sbjct: 121 YPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTLIATNSQ 180 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 R+A+ + + S I+P K + EL+ +D +++ N + D ++ Sbjct: 181 RMAMRKAAMSSPVTG-SFILPGKAMTELVNAIDKH-QFIQIYPSDNLVIFQADDLFLYTR 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSE-NQLKIT 293 L+ G +PD +++P+ + L Q RA +L++E K V ++ ++++T Sbjct: 239 LISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNEGRIQLT 298 Query: 294 ANNPEQEEAEEIL-DVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++ E E L + G ++I F+ ++ + L ++ E V + S+ + I+ Sbjct: 299 SSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMSEELVSLSFGGSLRPIIIKP 358 Query: 352 AASQSAAYVVMPMR 365 +S +++ P+R Sbjct: 359 YNKKSTIHLISPVR 372 >UniRef50_A1AV49 DNA polymerase III, beta subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A1AV49_RUTMC Length = 367 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 198/369 (53%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + + LL PLQ V + + LPIL ++L+Q+ D L+LT TD+E+E+ A ++ Sbjct: 1 MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRAS-QII 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E + T+ A+ DI + L E I +E ++ ++ ++ F L+T DFP+L Sbjct: 60 KNQEEISFTIYAKDLIDIIKKLSEDIIIEFIIESSKIYIKVNKNSFELNTSNHQDFPSLP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + +K LIE T FSM QD+R YLNG+ E + + VATDGHRL++ Sbjct: 120 KIKNSDIIKIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNSIVVVATDGHRLSIG 179 Query: 181 SMPIGQSLPS-HSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + +L + SVI+PRK V EL ++L+ + + + N + S+L+D Sbjct: 180 KVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLISNNTTIISRLID 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FP+Y +VLP N + + + +A+I E+ +GV+L ++L I +++ E Sbjct: 240 GNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFKNSKLHIFSHS-E 298 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS-SVQIEDAASQSA 357 + +A+ +++ E+EI FN++Y++ +L L + M++ D S S + Sbjct: 299 RGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEINMIVPDGKSQSCLLSSMNDDIY 358 Query: 358 AYVVMPMRL 366 YVVMPMR+ Sbjct: 359 QYVVMPMRI 367 >UniRef50_D0WL07 DNA polymerase III, beta subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WL07_9ACTO Length = 377 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 89/378 (23%), Positives = 164/378 (43%), Gaps = 18/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVA-DGTLSLTGTDLEMEMVARVAL 59 MK VE + + V+ + RP+LP+L + ++ DG+++L+ D ++ A + Sbjct: 1 MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHAVIEA 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 +PG T V R D R LP I ++L+G ++ V G S S+ ++P D+P+ Sbjct: 61 A-VDDPGTTLVHGRLLSDFARALPNKP-IDMELKGAKLEVVCGSSHISMQSMPLEDYPSA 118 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 EV + A + + + + D L + E EG+ + +ATD +RLAV Sbjct: 119 PPMP-EVSGVVDGALWQETVAQVVTAASSDDTLPLLVSVCIEIEGKTMSLMATDRYRLAV 177 Query: 180 CSMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSN----NIRAHVGDFIFT 233 + + S ++V + ++ + L + + I ++ I Sbjct: 178 RDLTWEPANEDASHRILVRASRLSDIAKALGSV-GKVELAIDNSGRTGMIGFSAAGRHNV 236 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 ++L+DG +P R + P + G + A RA ++ EK VRL SE Q+ + Sbjct: 237 ARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVV-EKNSAVRLSFSEGQVILE 295 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE--- 350 A + + E L+ T G ++ + FN S++ + L A VR+ T + + Sbjct: 296 AGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSAPYVRLSFTSASKPAVLTAQP 355 Query: 351 ---DAASQSAAYVVMPMR 365 Q ++MP+R Sbjct: 356 EIDGEDDQEFRLLLMPIR 373 >UniRef50_A8SK33 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SK33_9FIRM Length = 368 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 172/366 (46%), Gaps = 7/366 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ + + LL + + + IL +L V D L+L TDLE+ + Sbjct: 1 MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTE-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + + G + A +I R LP E+ ++++ E++ ++S ++F++ + +P Sbjct: 60 KVEKEGEVLLNASMISNIVRKLPND-EVYIKVDREKVFIQSENAKFNIIAMDIYSYPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++++V+F + + +K + T F+ A D R LNG+ E E + + VA DGHR+A Sbjct: 119 TFENKVDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKNVDFVALDGHRIAKR 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S I + + VI+P + + E+ +++ G + V + + + IF+++++DG Sbjct: 179 SFKIEEDIEK-KVIIPPRALNEISKIVPEGS-VVGVSLVKGSAIFTFENTIFSTRVIDGE 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNPEQ 299 + +Y+ + + L A RA I+ EK V + ++ + + + E Sbjct: 237 YLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVE-GSSEI 295 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ-SAA 358 + ++I+D+ G ++I FN YVL+ L ++ + V + + I+ Sbjct: 296 GDLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIEQDFVEITFNGRAGACIIKPEDENIDYT 355 Query: 359 YVVMPM 364 Y+V+P+ Sbjct: 356 YLVLPV 361 >UniRef50_Q89B36 DNA polymerase III subunit beta n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=DPO3B_BUCBP Length = 371 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 223/369 (60%), Gaps = 5/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L+K L++V+ + PIL N+LL D T++LT T+++ME+ + V Sbjct: 1 MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIIILDV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG+ TV +K +IC+ LP+ + +Q ++ + S +++ L+TLP +FPNL Sbjct: 61 TLLEPGSITVSGKKILNICQNLPKDHNLKIQYINNKLKIVSHNNQYLLATLPIKNFPNLK 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++ F + Q +K ++ AT FSMA QD+R +LNG+ FE + L VATDG+R+A+C Sbjct: 121 ISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHLYAVATDGYRIAIC 180 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 P+ S+I+PRKGV+EL+++L+ + + + I +N + + IFTSK++ Sbjct: 181 KKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNLIFTSKIIT 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 +FPDY ++ + K + L K+A +R AILSNE FRGV + +N+L IT +N Sbjct: 241 EKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKLLITTSNQH 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA---SQ 355 EEA EI+D+ Y+ ++++ N SY++D+LNA++ + + + D S+QI+ + Sbjct: 301 DEEASEIIDIIYTNIKIKMSINASYMIDILNAIQDQEICLSKNDVTHSIQIQAHHYKIAP 360 Query: 356 SAAYVVMPM 364 A Y++MP+ Sbjct: 361 KAIYIIMPL 369 >UniRef50_B0MXV3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXV3_9BACT Length = 374 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 8/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V LL L + + TLPIL L+++ L +T +DLE +V + + Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGER-MLVRSGRSRFSLSTLPAADFPNL 119 G PA+ D + E + + + S+ A +P + Sbjct: 61 GVESEGTIAAPAKLMLDSLKEFAEMPLTIEVNDQNWEIRLSWKSGSLSIPGASAVSYPAI 120 Query: 120 DDWQSE-VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 ++ E TL + I T F+ A ++R +NG+ L V TD H+L Sbjct: 121 PALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVYINLAPSMLTFVGTDAHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + S S I+P+K L +L ++ ++V S N + + +L++ Sbjct: 181 KYEVETANEVAS-SFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTLVCRLIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G +P+Y V+P + L R A+ SN +R+ +++N++ +TA + + Sbjct: 240 GNYPNYNAVIPTANPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRINLTAQDID 299 Query: 299 QE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS- 356 A E + +Y G + IGF ++++++L+ + + + L DS + + Sbjct: 300 FSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPTIVIELADSTRAGVFKPVYDDKQ 359 Query: 357 ---AAYVVMPMRL 366 ++MPM + Sbjct: 360 SSATLMLLMPMMI 372 >UniRef50_O54376 DNA polymerase III subunit beta n=76 Tax=Streptococcaceae RepID=DPO3B_LACLM Length = 380 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 170/376 (45%), Gaps = 12/376 (3%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF++ + L+ +G + T+P L L ++V + ++L G++ ++ + + Sbjct: 3 KFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADN 62 Query: 62 ------PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAAD 115 G+ + A F ++ LPE ++ E +++L+ SG+S +L L + Sbjct: 63 KDASMLISGTGSVLLEAAFFENVVSQLPEVTLEFIEKEQKQVLLTSGKSEITLKGLDSEI 122 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGEELRTVATDG 174 +P+L + + +K + T F+++ Q+ R G+ E EL+ VATD Sbjct: 123 YPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELKAVATDS 182 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HR++ +P+ + VI+P K + + + + + I + + + S Sbjct: 183 HRMSQRLLPLEDTDLKFDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNETISYYS 242 Query: 235 KLVDGRFPDYRRVLPK--NPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLK 291 +L++G +PD R++P + L L+ RA +L+ G V+L VS + + Sbjct: 243 RLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSVV 302 Query: 292 ITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 TAN+PE E L + G ++ I FN Y++D L +K VR+ +V ++ Sbjct: 303 TTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEVRIRFISNVRPFTLQ 362 Query: 351 DAASQS-AAYVVMPMR 365 +S ++ P+R Sbjct: 363 PRNEESGFVQLITPVR 378 >UniRef50_C1ZD41 DNA polymerase III, beta subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD41_PLALI Length = 377 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 101/376 (26%), Positives = 172/376 (45%), Gaps = 15/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT------LSLTGTDLE-MEM 53 M+ R L V + R IL N+ L LTGTD + + Sbjct: 1 MQLVCPRAVLSAAFTVVGAVVPSRTPREILKNVKLDAVASGPGATSSAQLTGTDGDGTSI 60 Query: 54 VARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 + V+ G+ +P ++ I R L + +++++ G+ + +R G S F LS Sbjct: 61 RFDLTDVECKVGGSALLPTQRLTSILRELTDD-TVSLEVNGDAVWLRCGGSEFRLSAEDP 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 ADFP ++ E F +P +RLI+ T F+ + RY L G+L E +++R ATD Sbjct: 120 ADFPTAPEFVEEDYFVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRMAATD 179 Query: 174 GHRLAV----CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD 229 RLAV CS+ S +VP K + + + L + + I +N+I G Sbjct: 180 SRRLAVAVGACSVEGQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDISIRAGR 239 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 T++LV GRFPDYR+V+P + ++ A ++ +++NE+ RGV +E Sbjct: 240 ASITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFTFAEGT 299 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSVSSVQ 348 L++ + + +++ L + Y G+E+ I F+ +V D L L+ V + L + S Sbjct: 300 LRLASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFLRVLEGSSTVHLKLINDESPGV 359 Query: 349 IEDAASQSAAYVVMPM 364 YV+MP+ Sbjct: 360 FT--TDDDYTYVIMPL 373 >UniRef50_C9LP65 DNA polymerase III, beta subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP65_9FIRM Length = 369 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 150/369 (40%), Gaps = 6/369 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T + + L L++V + T + DG + D + + Sbjct: 1 MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIGIRTFCE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNL 119 E G+ + + + +P G + Q +GE + ++G+ T A+FP + Sbjct: 60 DVEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGESTVFFKAGQYNSHFPTRDTAEFPLV 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + + ++ F+ + G+L + AT+ HRLA Sbjct: 120 TEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINENVFTMAATNSHRLAA 179 Query: 180 CSMPIGQ-SLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + + + IV + +++R+L G D+ + + S ++ G+ F S L+ Sbjct: 180 REISLEEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLSNLI 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITANN 296 +G +PDY+RV P + D + ++A + +S + ++ + L+ + Sbjct: 240 NGVYPDYKRVFPSSFDLNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAFEED 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 P+ +E + GA+++I FN +YV D+L K E + + + + +E ++ Sbjct: 300 PDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKIILHVK-KNGPMVVEQEEDKA 358 Query: 357 AAYVVMPMR 365 YVV PMR Sbjct: 359 YRYVVTPMR 367 >UniRef50_C0R0U9 DNA polymerase III beta (Beta clamp) subunit n=2 Tax=Brachyspira RepID=C0R0U9_BRAHW Length = 375 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 6/372 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ ++K + + G+ I N+L ++ L+LT TD + +R+ L Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRIILD 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFS--LSTLPAADFPN 118 GA V A+K I + +P+G E E++ + S + + + DFP Sbjct: 61 DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKINIESENGKTKHLIIGMKTDDFPA 120 Query: 119 LDDWQSEVE-FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 + ++ LP + +I T S+A + + L G+ FE + VATDG R+ Sbjct: 121 YPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFEKTDSKFLAVATDGRRM 180 Query: 178 AVCSMPIG-QSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSK 235 AV S S+I+ K + E++ + + +++ + + VG + F S Sbjct: 181 AVIEREFEGVENGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQVGKYDFVSS 240 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE-KFRGVRLYVSENQLKITA 294 L++G++P++R+V+PK + L A R + N+ + + + L VSE LK+ Sbjct: 241 LIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLKVKG 300 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N E E+ E +D+ YSG E + +N +Y+ DV+ + E V M+ S +++ Sbjct: 301 INQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEIVTFMVNKDSSPTMVKEIER 360 Query: 355 QSAAYVVMPMRL 366 + Y++MPM + Sbjct: 361 EDYYYIIMPMSI 372 >UniRef50_C1TP63 DNA polymerase III, beta subunit n=2 Tax=Synergistaceae RepID=C1TP63_9BACT Length = 386 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 162/371 (43%), Gaps = 5/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T+++ +K + TL +L +L DG ++L TDL+ + + V Sbjct: 1 MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG +P + ++ + P E ++ SGR+R+ +T PA DFP L Sbjct: 61 TIDEPGKAVLPIKVVGELFKKSPTSIFTVEVAERGTGILLSGRNRYRFTTYPADDFPPLP 120 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAHQDVRYYLNGM-LFETEGEELRTVATDGHRLA 178 + +F L + + R+++ + + + G L + + E V+TDG RL+ Sbjct: 121 SPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGECHCVSTDGRRLS 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 + + + P +++P V E +R+L G D + V + + F+ + Sbjct: 181 LSKAYVDKENPEQDMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQLDSLEFSVRR 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL-KITAN 295 VD FP+Y R+L N L+ A R ++ + R V L +S K++ Sbjct: 241 VDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSPGGDLKLSGR 300 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 PE EA EI+D G +++ FNV +++D L A + V + + + Sbjct: 301 APEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKVSLSFNGQEGQMMMLRPNES 360 Query: 356 SAAYVVMPMRL 366 Y++MP++L Sbjct: 361 DFLYMLMPIKL 371 >UniRef50_B9ML38 DNA polymerase III, beta subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9ML38_ANATD Length = 368 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 168/371 (45%), Gaps = 10/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F V++E L + +V IL +L++ D + T D++M+M Sbjct: 1 MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAED-RIIFTTNDMKMQMQTEFE-A 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + E G+ + A+ DI + LP G + V E + +RS + F L TL DFP +D Sbjct: 59 EILERGSALLKAKLLSDIVKKLPSGD-VEVIREENEVKIRSQKIEFRLPTLEPLDFPKMD 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEEL-RTVATDGHRLAV 179 SE + ++ F+ + + R G+LFE E ++ V DGHRLA+ Sbjct: 118 RKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFEKEDDDFVNLVGMDGHRLAI 177 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 C + S S IVP + + ++ +++D +RV N +G L+ Sbjct: 178 CKIKPVAVEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVILTLIS 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF---RGVRLYVSENQLKITAN 295 G+F DY+ +P + D+L+ RA+I+S ++ + V + + + Sbjct: 238 GKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFTVKSV 297 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + + EE + + G ++ +GFNV Y LDVL L E + + +T S ++ Sbjct: 298 SAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDGE-INLFITSQTSPSIVQKPDDP 355 Query: 356 SAAYVVMPMRL 366 + Y+V+P+++ Sbjct: 356 NYIYLVLPIKM 366 >UniRef50_C2D9K3 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9K3_9ACTN Length = 369 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 157/370 (42%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+V ++ + + V + + TLP+LG + +Q TL+L DL++ + ++ Sbjct: 1 MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G T VP + + LP+ I ++ + ++ +S + LSTL AADFP Sbjct: 61 -VEEEGQTVVPGLFLSKLVKNLPDAP-ITMETTPTQAILTCLKSTYELSTLDAADFPEFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 D LP + ++E L G+ + +L ATD HRL + Sbjct: 119 DITPSQSIELPSDLLNDMVERVYRVTKEDISNPILGGITLVAQENKLTMYATDSHRLVII 178 Query: 181 SMPIGQS--LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + I+P EL+ L L++ + N + + + S ++ Sbjct: 179 DTNTETASIDSEFTAIIPAVCFHELLN-LPTITPRLQIGLTDNQVIFSFENTTYVSLKIE 237 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ--LKITANN 296 G FP+Y+ + P + L + L QA R A+++ K GV V + + A++ Sbjct: 238 GMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITLKADS 297 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNA-LKCENVRMMLTDSVSSVQIEDAASQ 355 E ++E T G + N ++L+ + + + + DS + I+ + Sbjct: 298 SEFGASKEEFSATIEGNPISFSMNYQFILECCRSTTHADEMTFEIVDSFQPIVIKSFGTM 357 Query: 356 SAAYVVMPMR 365 + +++P+R Sbjct: 358 NYQCLLIPLR 367 >UniRef50_B6YRT5 DNA polymerase III beta subunit n=26 Tax=Bacteroidales RepID=B6YRT5_AZOPC Length = 374 Score = 286 bits (733), Expect = 8e-76, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 3/359 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + LL LQ V + + +PIL L Q++D L++TG D E + ++ Sbjct: 1 MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-GERMLVRSGRSRFSLSTLPAADFPNL 119 G +P++ D R LP+ V E +L+ ++S ++P Sbjct: 61 NAEGEGKFAIPSKNLLDALRELPDQPITFVINETNNEVLIYYENGKYSFIAQNGDEYPTS 120 Query: 120 DDWQ-SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 Q E + + I +T F+ AH ++R +N + F+ + E + VA+DGH+L Sbjct: 121 KPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPERVIFVASDGHKLV 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 S S I+PRK L +L + + N I + F S+L++ Sbjct: 181 RLKNSRLSGNKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLISRLIE 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G +P+Y V+P + A R + SN ++L + N++ ITA + + Sbjct: 241 GHYPNYNAVIPNESPYRIIVDRLNFLNALKRVTLFSNPGNSLIKLQILANKIFITAQDID 300 Query: 299 QEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 A E L Y G E+ IGF +Y++++LN + + L D + I ++ Sbjct: 301 YSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSNEIIFELADVTRAGLILPKENKE 359 >UniRef50_C0EA16 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA16_9CLOT Length = 340 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 78/339 (23%), Positives = 161/339 (47%), Gaps = 5/339 (1%) Query: 30 LGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIA 89 + +LL+ + L LTG DL++ + + + EPGA + AR F DI R +P+ Sbjct: 1 MEGILLECENNNLKLTGYDLDLGITKTIQVETV-EPGAIVLNARLFSDILRKMPDEQITI 59 Query: 90 VQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQ 149 + + + F++ + ++P++ FT P +K +I T F+++ Sbjct: 60 TSDQKLLTRIEGIDTEFNILGMSRDEYPDMPAVDDSQGFTAPDYLLKNMINQTLFAISVN 119 Query: 150 DVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDG 209 D L G LF+ ++ V+ DG+R+A+ I S +VP K + E+ ++L Sbjct: 120 DQTPVLTGSLFDLNSGKMSVVSVDGYRVALRKENIASDT-DVSFVVPGKTLAEITKLLSD 178 Query: 210 GDNPLR-VQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFA 268 + + V +GS +I + + S+L++G + DY+ +P+ + A + Q+ Sbjct: 179 QEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVVQSIE 238 Query: 269 RAAILSNEKFR-GVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 R +I+ N++ + V+L + + +T + + + + T G + I FN Y++D Sbjct: 239 RTSIIINDRNKSPVKLVTEGSTINLTCEST-IGKVSDRFEATVEGDPIRIAFNNKYMIDA 297 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L +C+ + + + +S ++I ++V+P+RL Sbjct: 298 LKHTECDQIYIDINGPLSPIKIIPTEGDDFLFLVLPVRL 336 >UniRef50_C0QD86 DnaN n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QD86_DESAH Length = 371 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 174/373 (46%), Gaps = 9/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+ +R+ L + L QV G G + L I ++L++V+ + +T DLE R Sbjct: 1 MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + A+K ++I R P+ ++E + + ++ + + +FP Sbjct: 60 EIESDGIIAINAKKLYEIIREYPDAQVPLNEIENRWVEIGKDNIQYHIVSSDYENFPETP 119 Query: 121 DWQSEVEFTLPQATMKRLIE-ATQFSMAHQDVRYYLNGMLFET----EGEELRTVATDGH 175 + + A K+++E + + + + R Y+ G LFE GE LR V+TD Sbjct: 120 LIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVSTDSR 179 Query: 176 RLAVCSMPIGQSL--PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 RL L P +VI+P+KG+ EL R L + + + I +++ + Sbjct: 180 RLNSFDASYEGELVLPDENVIIPKKGLSELGRFL-DREGSVNIGIKDDHLIVQKQNETLM 238 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKIT 293 KL++G +PDYRRVL + +E +L R +ILS+E ++ V +EN+L +T Sbjct: 239 IKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENELVVT 298 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 NPE E++E + + Y G E FN Y +D LN++ + V + + + I+ Sbjct: 299 ITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINSDTVILNVKGAKHPCIIKGLD 358 Query: 354 SQSAAYVVMPMRL 366 +M M + Sbjct: 359 DDQLVCAIMAMSV 371 >UniRef50_Q04WF6 DNA-directed DNA polymerase, beta subunit n=7 Tax=Leptospira RepID=Q04WF6_LEPBJ Length = 373 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 171/375 (45%), Gaps = 11/375 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V LK + V G + R IL NL ++ + + L+ TDLE+ + ++ Sbjct: 1 MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE------RMLVRSGRSRFS--LSTLP 112 + + G+ ++PA++ + + I E + + SG++ + +S + Sbjct: 60 EVIQAGSISLPAKQLSSFFKTIHFEETILSLEESDGDSSIVYITDASGKNDYKSKISGMD 119 Query: 113 AADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVAT 172 A + + + P + +I T +++AH+D R+ NG+ +G +L V T Sbjct: 120 AEEIKTISKVSPSQISSFPSNLINDMIRKTSYAIAHEDQRFIFNGLYMIPDGNKLTFVGT 179 Query: 173 DGHRLAVCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 DG RL + L S+IVP K V E+ +M+ + + + + I A + Sbjct: 180 DGRRLCKIERTLPSPLQFKDSIIVPAKAVREISKMIATSETG-NLGLIDSQIYASANNIE 238 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 KL++G FP+Y +V+PK+ + + + + + + E R V+L S+N L Sbjct: 239 LLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSRQVKLTFSKNNLN 298 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 + A EA + YSG E+ I F Y++D+ ++ +++ +DS S V +D Sbjct: 299 LFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSIDDNEIKIEFSDSSSPVIFKD 358 Query: 352 AASQSAAYVVMPMRL 366 + V+MPM+L Sbjct: 359 PSDPEFISVIMPMKL 373 >UniRef50_Q7VH41 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VH41_HELHP Length = 353 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 160/364 (43%), Gaps = 13/364 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK ++ + L L L R I ++ + D L L TD E+ + + + + Sbjct: 1 MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYINIP 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TV ++ DI + L + + ++ + + + + G++R L A +FP Sbjct: 61 -CQAQGNATVNGKQILDIIKRLKDD-NVTIETKQDSLHISQGKARTKLPMFNADEFPKFP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + + + I+ ++ + +Y LNG L + + VATD RLA+ Sbjct: 119 EYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDIKDYSFNFVATDTRRLALI 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S+ + S+++P+K + E+ ++ L + ++ D+ F +KL+ G+ Sbjct: 179 EYK-NPSINALSLVIPKKAINEIQKLFVD---TLEIYHNPTHLILKNNDYTFYTKLISGK 234 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 +PDY +++PK + D A L+N +++ +S N++ + N E Sbjct: 235 YPDYEKIIPKEFKHKIVLPKDKFVDALQFVKSLANN----IKITLSPNEVLFESLNEESG 290 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 EA ++V + + +G N Y+LD L+ + + + + + + ++ + V Sbjct: 291 EASTQIEVQTNIENLTLGINSKYILDFLSQIDANEFTLCINEPNTPFVVMS---ENFSTV 347 Query: 361 VMPM 364 +MP+ Sbjct: 348 IMPV 351 >UniRef50_Q2GAN7 DNA polymerase III beta subunit family protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAN7_NOVAD Length = 415 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 110/385 (28%), Positives = 177/385 (45%), Gaps = 39/385 (10%) Query: 21 LGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPH----------EPGATTV 70 GG+ T+PIL + ++ +DG L+LTG DL+ ++ + P AT V Sbjct: 31 AGGKDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATCV 90 Query: 71 PARKFFDICRGLPEGAEIAV---QLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVE 127 PAR I + + A + V + R+ + +GRSRF ++ LP DFP E Sbjct: 91 PARALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEHS 150 Query: 128 FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQS 187 F++ ++ + + +++ ++ RYYLNG+ + + R ATDGHRLA Sbjct: 151 FSIAAGALRDVFARVEHAISTEETRYYLNGVYMHPQDLDQRFAATDGHRLARLVQDGPDG 210 Query: 188 LPSH-SVIVPRKGVIELMRMLDGGDN----------------PLRVQIGSNNIRAHV--- 227 S +VI+ R+ V L ++LD + V SN + Sbjct: 211 AASFPAVIIGRRTVAVLDKLLDAAGKVDTSTSDDADKACSRPMVEVDSDSNGRVIYWAMP 270 Query: 228 ----GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL 283 G+ +K VDG FPDY RV+P P L + L A R A + ++K R V+L Sbjct: 271 APDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTRAVKL 330 Query: 284 YVSE-NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD 342 + + ++ +PE +A E + Y+G + IGFN Y L+A+ + V M TD Sbjct: 331 ELDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSAVATDKVLMKFTD 390 Query: 343 SVSSVQIEDAASQSAA-YVVMPMRL 366 + +IE +SA V+MP+R+ Sbjct: 391 AGGPCRIEAEGGESALVQVLMPLRV 415 >UniRef50_B0VFV2 Putative DNA polymerase III, beta chain (DnaN-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFV2_9BACT Length = 389 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 177/390 (45%), Gaps = 27/390 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARVA 58 M+ +E++ LL +Q + + + T PIL N L++V + + ++ TDLE+ +V Sbjct: 1 MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G V A F +I +P+G I + + ++++ G+ F+L FP Sbjct: 61 AA-VSEGGTVAVSAHHFNEIINYMPDG-VINLWRNDDLLMIQCGKVDFNLLIADHTLFPV 118 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + + + T+ R+I T F+++ R LNG+ ++ + ATDG ++A Sbjct: 119 IPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKIYPDHHIMAATDGRKVA 178 Query: 179 VCSMPI--------GQSLPSHSV-----------IVPRKGVIELMRMLDGGDNPLRVQIG 219 + P ++ ++P K ++ L ++ + L+V + Sbjct: 179 EIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKELKVGLE 238 Query: 220 SNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFR 279 N I G++ +S++++ +FPDY++ P L A R A+++ + Sbjct: 239 HNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALVAPDDNL 298 Query: 280 GVRLYVSENQLKITANNPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 + + ++ ++ +N + EA+E + D T++G+ I FN Y+L +L A+ E V + Sbjct: 299 RIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAIDTEKVVI 358 Query: 339 MLTDSVSSVQI---EDAASQSAAYVVMPMR 365 L S ++ I Q +++MP+R Sbjct: 359 KLGTSKDAMMIYNETPLPDQEITFLLMPLR 388 >UniRef50_Q8ZSE2 DNA polymerase III beta subunit n=2 Tax=Nostocaceae RepID=Q8ZSE2_ANASP Length = 456 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 74/376 (19%), Positives = 158/376 (42%), Gaps = 13/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTL-SLTGTDLEMEMVARVAL 59 MK ++E+ L + L+ + +PT PILGN+LL + + S TGT+L + + Sbjct: 1 MKLSIEQSKLAEILETAYFAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTT-TT 59 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 G +PA+ D + EI +++E + ++ + L +FP L Sbjct: 60 ANVETSGQVALPAKLLTDTINNV--RGEITLEVENQACIITHNSGKCRLIGGKPDEFPTL 117 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ +E L ++ +E T + + + L G+ F+ + + + +T+GH+LA+ Sbjct: 118 PKGENPIEVNLSAKKLQAALEGTLYCTNGDETKLVLTGVNFKIDTNKWQAASTNGHKLAL 177 Query: 180 CSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNP--LRVQIGSNNIRAHVGDFIFTSKL 236 + + VP K + EL ++L + + + + I + S+L Sbjct: 178 VTGTLDSEYSDPIDFTVPGKSLSELSKILSQSADTSVCNILLSNKTIEFSLPHTKVISRL 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRL--YVSENQLKITA 294 ++G +P ++P+ + + A R + L+ K + V++ + Q + Sbjct: 238 LEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQATLYT 297 Query: 295 NNPEQEEAEEIL---DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 + +A + + T + IG N+ Y+L+ L + + + + V I Sbjct: 298 EATDIGDAVDSVLMKPATNHSENISIGLNIDYLLEGLKHISTDEIVVRCNKPTQPVIICP 357 Query: 352 AAS-QSAAYVVMPMRL 366 + Y+VMP+ + Sbjct: 358 MGGLLNQLYLVMPVEI 373 >UniRef50_C7REZ6 DNA polymerase III, beta subunit n=5 Tax=Anaerococcus RepID=C7REZ6_ANAPD Length = 370 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 166/373 (44%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + ++ L+ + + + I + + + +LSL D E+ + +V V Sbjct: 1 MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V A +I R LP + ++ + ++ ++ S F+L D +++ Sbjct: 61 -VDEEGEMAVKASLISNIVRKLPND-IVIIENKNGKISIKCSSSSFNLIAFDYYDKNDIN 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + +KR I T+F+ + + + L G+LFE + + VA DG+R+++ Sbjct: 119 -IPETKPIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNMVALDGYRVSLK 177 Query: 181 SMPIG--QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + + I+P++ ++E R++ D ++ N++ G K++D Sbjct: 178 KIKLDYPTDYEDSEYIIPKRSLLEWSRIVSD-DLTTKLYKNENDLIFTSGSTTMQCKVID 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQLKITANNP 297 F DYR ++ + + L + RA +LS+ + +++ +S+N + I + N Sbjct: 237 KNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIELSDNVMLIKS-NS 295 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA----A 353 E + E +DV G ++EI FN Y+ + + A +++ S++ I Sbjct: 296 EIGDVREAIDVEQKGNDLEIAFNARYMQEGVKACDSSKIKLNFKSSLNPCLIYPENSSYE 355 Query: 354 SQSAAYVVMPMRL 366 + Y+V+P+RL Sbjct: 356 DEDFTYLVLPVRL 368 >UniRef50_Q72H86 DNA polymerase III, beta chain n=6 Tax=Thermaceae RepID=Q72H86_THET2 Length = 375 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 178/380 (46%), Gaps = 19/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M TV ++ L L + + R P+ L L +G L L GT+ E+++ R+ Sbjct: 1 MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLE---GERMLVRSGRSRFSLSTLPAADF 116 P VPA+ FF + R LP + + E G ++ + SGR R LS PA + Sbjct: 61 AQSLP-RVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEGY 119 Query: 117 PNL--DDWQSEVEF----TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTV 170 P L + + + F +P + + + +++ ++++ R G+ E + R V Sbjct: 120 PELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFRAV 179 Query: 171 ATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSNNIRAHVGD 229 A+DG+RLA+ +P+ Q +VP + V E++R+L G D + +G + + Sbjct: 180 ASDGYRLALYDLPLPQG-FQAKAVVPARSVDEMVRVLKGADGAEADLALGEGVLALALEG 238 Query: 230 ---FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 +L++G FPDY+RV+P+ ++ + L++A R ++LS+ + V L + Sbjct: 239 GSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRVDLLLE 298 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 E ++ ++A + + +E + G M + +N Y+L+ L + + + ++ S Sbjct: 299 EGRILLSAE-GDYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPV-GDRAHLGISGPTSP 356 Query: 347 VQIEDAASQSAAYVVMPMRL 366 I + VV+P+R+ Sbjct: 357 SLIWG-DGEGYRAVVVPLRV 375 >UniRef50_C5NVV0 DNA polymerase III, beta subunit n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NVV0_9BACL Length = 379 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 90/378 (23%), Positives = 173/378 (45%), Gaps = 14/378 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 MKFT+ + + L L VS + IL + +++ L L +D + + V Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60 Query: 58 ----ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPA 113 ++ E G +P+R F +I R P I ++ G +LV+SG+S F++ A Sbjct: 61 EDDKEVITIEEEGQVVLPSRNFIEIIRKAPTD-LIEIETVGNNILVKSGKSEFNVKGYDA 119 Query: 114 ADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATD 173 D+P E L +I+ T F A D R L G+ F + L ATD Sbjct: 120 NDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNKILTATATD 179 Query: 174 GHRLAVCSMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI 231 +RL+ + + S ++I+PRK + RM++ G + + + +N I + + + Sbjct: 180 SYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLYYQNVV 239 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSN-EKFRGVRLYVSENQL 290 +T L+ G +P+ +++P + A A R A++S +K ++L V++N L Sbjct: 240 YTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLVVTDNLL 299 Query: 291 KITANNPEQEEAEEILDV--TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQ 348 ++++ + E A E L V T + EI + Y+ D + A+ E + + + +++ Sbjct: 300 EVSSQSKELGSAVEELKVSSTLEDEKFEISVSGKYLKDAVAAVAAEEIIVKFSGELTAFI 359 Query: 349 IEDAA-SQSAAYVVMPMR 365 I+ + + +++P+R Sbjct: 360 IQPSDYHREIIELILPVR 377 >UniRef50_C6V443 DNA polymerase III, beta subunit n=2 Tax=Neorickettsia RepID=C6V443_NEORI Length = 372 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 187/365 (51%), Gaps = 6/365 (1%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 TV+++ L + L + + T+ L ++ ++ ++ LT TD E+ + + ++ Sbjct: 9 ITVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW 122 A +V A + ++I + LP + + +E + ++VRS R FSL L A FP + + Sbjct: 69 VIDAAISVDAFRLYEIVKRLPTDVGVVLSIEKDNLVVRSKRIEFSLPYLDAKHFPLISEE 128 Query: 123 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 182 + + ++ L +F+ +++ R +LNG+ FE++GE++ ATD HRLAV ++ Sbjct: 129 EKIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGEKITVAATDVHRLAVATL 188 Query: 183 PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS--NNIRAHVGDFIFTSKLVDGR 240 L S I+P+K V E++++ + L + + I+ G SKL+ G Sbjct: 189 TKKTGL-KFSCIIPKKTVSEMIKLSSSKEVELFLHGREYISRIKMVFGSVRLNSKLIAGT 247 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP++ V+P++ L L + R ++S ++ R + + + QL + A+N + Sbjct: 248 FPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYLDASNSDAS 307 Query: 301 EAEEILDVTY-SGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 E+L++ +G E+ I FN Y+LD+L+AL + V M ++ S V + +SA Y Sbjct: 308 FGRELLELNEDTGEEISIYFNHVYLLDILSALDNKEVTMKFNNATSQVLFQ--GDESALY 365 Query: 360 VVMPM 364 VVMPM Sbjct: 366 VVMPM 370 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 82/244 (33%), Gaps = 21/244 (8%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + + + +V T L + + +++ TD+ VA + Sbjct: 133 QINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGEKITVAATDVHRLAVATLTKKT 192 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEG----ERMLVRSGRSRFSLSTLPAADFP 117 + + +P + ++ + L E+ + L G R+ + G R + S L A FP Sbjct: 193 GLK-FSCIIPKKTVSEMIK-LSSSKEVELFLHGREYISRIKMVFGSVRLN-SKLIAGTFP 249 Query: 118 NLDDWQSE---VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 N + T + + IE ++ R G+ +G++L A++ Sbjct: 250 NFAAVIPQSFKSSLTFDRKALATSIERVGL-VSPDQSRAISIGI----KGKQLYLDASNS 304 Query: 175 HRLAVCSMPI----GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF 230 A + + S+ +++++ LD + ++ ++ + + Sbjct: 305 D--ASFGRELLELNEDTGEEISIYFNHVYLLDILSALDNKEVTMKFNNATSQVLFQGDES 362 Query: 231 IFTS 234 Sbjct: 363 ALYV 366 >UniRef50_D0YTZ8 DNA polymerase III, beta subunit n=2 Tax=Mobiluncus mulieris RepID=D0YTZ8_9ACTO Length = 388 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 74/379 (19%), Positives = 153/379 (40%), Gaps = 17/379 (4%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 + + RE L + + S + RP +P++ + + + D + V ++ Sbjct: 9 ELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPLE 68 Query: 62 PHEPGATTVPARKFFDICRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G V + + R LP +E++ + E + + G L +P D+P L Sbjct: 69 LITEGTVVVDGKLLSETARALPNKISEVSFKTEDNYLHITCGSFHQQLLVMPEEDYPQLP 128 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +V + I + + + L G+ E E+L +ATD +R+A+ Sbjct: 129 QLP-QVVGQVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPEKLCVLATDRYRMALK 187 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRMLDGGDNPLRVQIGSNN-----IRAHVGDFIFT 233 +P + P ++V K + + + + + + + + + G +FT Sbjct: 188 EIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAGGRLFT 246 Query: 234 SKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKI 292 S++ DG +PD RR+ P+ + A R AI+S N + + L ++ L+ Sbjct: 247 SQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQGTLEF 306 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 A + + A + + V +GA++ + FN +++ L+ + VR+ D V I Sbjct: 307 RAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLSVVDEPYVRLSFKDETKPVIITGQ 366 Query: 353 ASQ------SAAYVVMPMR 365 + Y++MP+R Sbjct: 367 KEETGDDSLDFQYLIMPIR 385 >UniRef50_C7LJX6 DNA polymerase III, beta subunit n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LJX6_SULMS Length = 371 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 171/370 (46%), Gaps = 7/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF LL+ L+ + + LPIL N L ++ + L++T +DLE+ M + + Sbjct: 1 MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLNI 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +P + +I + +PE + + ++ + S + LS + ++P Sbjct: 61 NSIN-FGSAVIPHKILLEILKKIPEQPLTFCKEKENKLKILSQNGEYDLSIFSSEEYPKY 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ F + + + +I T F++ + ++R LNG+ F+ E V+T+ + L Sbjct: 120 SLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDIENNISNFVSTNSNFLVK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ +I+P+K + L L+ +N + + N L++G Sbjct: 180 YSIKDLSFNKEIRLIIPKKPLNILKYNLNDTNNNVYISYNDLNTSFFFKKKKIICSLING 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+Y+ ++ K +K L + A R + SN + L S+ + +I++ + Sbjct: 240 NYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISSFDINY 299 Query: 300 E-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED----AAS 354 +A E L Y G +EI FN Y++++L+ + CE+++ + ++ SS +I + Sbjct: 300 NKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINCEDIKFEMLNNNSSCRITPLMKNSKK 359 Query: 355 QSAAYVVMPM 364 + ++MP+ Sbjct: 360 EEILILIMPL 369 >UniRef50_UPI00016C54E2 DNA polymerase III, beta chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E2 Length = 375 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 169/376 (44%), Gaps = 15/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T +R+ LL Q V + R T P+L N+ D ++L D E+ + + + Sbjct: 1 MKVTCQRDSLLTACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYELRGI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ +P + I R EI++ E ++ ++ +F + +L +FP++ Sbjct: 61 TVARAGSCILPITELVKILRE-SSDPEISLDAGKEAVVAKTSGGKFEMPSLDVNEFPDIP 119 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAHQDV--RYYLNGMLFETEGEELRTVATDGHRL 177 ++ + + ++ ++ T F+ +D R+ L G+L+E +G+E R VATD RL Sbjct: 120 EFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARLVATDTKRL 179 Query: 178 AVCSMP--IGQSLPSHSVI--VPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFT 233 AVC + + I VP K V L + L +RV + +N+ Sbjct: 180 AVCKGEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDALFKTERATIY 239 Query: 234 SKLVDGRFPDYRRVLP---KNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 + LV G+FP YR ++ K + + +AAI+++++ V + + Sbjct: 240 TSLVQGKFPPYRDIIGKTTKEATQKVPLPVQGFLSRVRQAAIMTDDESMRVDMTFDPGSV 299 Query: 291 KITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCE-NVRMMLTDSVSSVQ 348 + A + +E L++ Y G EI F+ SY+++ L A++ E V + ++ + Sbjct: 300 VMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENEPTVVLEMSTGTRAAL 359 Query: 349 IEDAASQSAAYVVMPM 364 + +Y+VMP+ Sbjct: 360 FTC--GDNYSYLVMPL 373 >UniRef50_Q1PVD8 Similar to DNA polymerase III beta subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVD8_9BACT Length = 366 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 158/365 (43%), Gaps = 3/365 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + L K + + IL + L+VAD LT TDLE+ + R+ Sbjct: 1 MKILFSGDALHKGFSLTASVVPSSAMKQILQGVKLEVADNCAELTATDLEVLVKYRIPAK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G +PA + +I R EI+V +E ++S F + FPN+ Sbjct: 61 ACEGEGGIVLPASRANNIFREWAGNEEISVTVEAGHCTLQSKGGSFKILGDDCLQFPNIT 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + +++E ++++ +G+ + G+ + V +D +RLAV Sbjct: 121 KTDVTSFVEIDGEILGKMVEKVAYAVSSIKALSIYSGISVKIFGDTIIMVGSDMNRLAVV 180 Query: 181 SMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + S S IV K + L R + L V +G + I S+L++G Sbjct: 181 KRKVRNPENVSMSGIVGVKCLAFLQRFVSECKGTLMVGMGESQIHFIGEKGEVISQLIEG 240 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 ++P+Y V+PKN DK +E D L A+ ++N+++R V +++N+L I ++ Sbjct: 241 KYPNYDEVIPKNNDKKIEVNRDELLSIVRMASFVTNDEYRVVEFSLTKNKLSIFSSAANV 300 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA + Y G + FN Y+LD L A CE + + L + + + + Sbjct: 301 GEAALEIAAQYDGPDYTNTFNPDYILDFLRASDCETITIELGEIDDAALFKTGHEE--IN 358 Query: 360 VVMPM 364 V+MP+ Sbjct: 359 VMMPV 363 >UniRef50_B0RH70 DNA polymerase III, beta chain n=4 Tax=Actinobacteria (class) RepID=B0RH70_CLAMS Length = 396 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 154/382 (40%), Gaps = 25/382 (6%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 KF V R+ + + L R TLPIL +L++ + L+L+ D E+ ++ Sbjct: 15 KFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQ-AD 73 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 EPG V R DI LP + E ++ V G + F+L ++P ++P L Sbjct: 74 IEEPGRVLVSGRLLADIANRLPNAP-VRFTTEDSKITVSCGSAHFTLLSMPVEEYPTLPQ 132 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + LP + + + DV + G+ E L +ATD +R+AV Sbjct: 133 ISEQSGL-LPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGLIATDRYRVAVRE 191 Query: 182 MPIG-----QSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN----IRAHVGDFIF 232 + S + +VP + + E+ + G + V I + I Sbjct: 192 IDWDGGDSTTDGTSRTALVPARTLQEIGKTF-GHSGTISVAITDTDDRQLIAFSADKKTV 250 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 TS L+ G FP +R+ P+ D + L +A R ++ E+ +R + + L + Sbjct: 251 TSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFTIDGLTL 309 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLT---DSVS--SV 347 A E +A E +D +G + + ++LD L A+ E VR+ T + V Sbjct: 310 EAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKTDNPNKPGPV 369 Query: 348 QIED------AASQSAAYVVMP 363 I A + + Y++ P Sbjct: 370 LITSQSSKDQAGADNYRYLLQP 391 >UniRef50_A5EX08 DNA polymerase III, beta subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX08_DICNV Length = 414 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 112/414 (27%), Positives = 198/414 (47%), Gaps = 48/414 (11%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + ++ L K L ++ + + TL IL ++ L++ + L+L TD E+ + ++ ++ Sbjct: 1 MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 GA T+P KF+ + + +G I +L ++ + +G++ L+TLPA DFP Sbjct: 61 NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQQFHIHAGKTIVKLATLPAKDFPIPL 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET--EGEELRTVATDGHRLA 178 D +L + L+ ++++A+QD R YLNG+L +G L V+TDGHRLA Sbjct: 121 DNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGHRLA 180 Query: 179 VCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDN------------------------- 212 + +++ + IVP K V EL++ L Sbjct: 181 CAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNEQID 240 Query: 213 -------------------PLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 253 P+ + + +G + F+++L+DG++P YR+V+P + Sbjct: 241 ILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPLQQE 300 Query: 254 KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGA 313 + L A RA +L ++ GVRL+ + L +TA N E E E L++ SG Sbjct: 301 NPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIINSGN 360 Query: 314 -EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 +EIG NV+Y++DVL L+ E V++ L + + + +V+MPMR+ Sbjct: 361 LTLEIGLNVNYLIDVLMHLEGETVQLHLENGEQACLLMSKDEPDVRHVIMPMRI 414 >UniRef50_Q7MTT8 DNA polymerase III, beta subunit n=2 Tax=Porphyromonas gingivalis RepID=Q7MTT8_PORGI Length = 377 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 8/374 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF V LL+ LQ ++ + R TLPIL ++L ++ L LT D+ M + + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60 Query: 61 QPH-EPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 E G+ VP R + + LP+ + +E + + +S + +P Sbjct: 61 NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDVSTYPV 120 Query: 119 LDDWQSEVEFTL-PQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 E ++ P + + AT F+ + + R + G+ + ++L V +DG L Sbjct: 121 AASLSPEAIVSIVPAEALLSGLSATLFATSQDERRPIMTGVYLDFFEDKLVFVGSDGQIL 180 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 QS + +PRK + L +L + + + SN + +G++ ++L+ Sbjct: 181 VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLRARLL 240 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 +GR+P+Y V+P + ++ L R +I SN +R+ + ++++AN+ Sbjct: 241 EGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLSANDI 300 Query: 298 EQE-EAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 + AEE + M IGF +L + E V M L D + I A + Sbjct: 301 DFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPSEEVIMTLADQTRAGLILPAENA 360 Query: 356 ---SAAYVVMPMRL 366 S +++PM+L Sbjct: 361 PGISLCNLLLPMKL 374 >UniRef50_B8F8V2 DNA polymerase III, beta subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F8V2_DESAA Length = 370 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 163/371 (43%), Gaps = 8/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ T+ ++ LL+ + P LG + ++ +L++ TDL+ + + L Sbjct: 1 MQLTIPKQALLRAVLAAEHVAAKDKNFPALGGIRMEAGHQSLTIQATDLDTGYASVLTLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPGA PA++ + PE + +E + R+R SL+ + DFP + Sbjct: 61 DIQEPGAALPPAQQLKAVIMDWPEEDA-RLSVENGFPTITGERTRTSLAGMDPEDFPEIP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFS--MAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 + F +P T++ L+ T S + + R ++ G +GE L TDG +LA Sbjct: 120 EPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGAHLARDGEHLVITTTDGCQLA 179 Query: 179 VCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 S PI + LP +I+ + G +LM + + + S+++ A + S+LV Sbjct: 180 RGSFPIQDARLPEKGIILHKTGAAKLMEFAKNAPGDVALGVTSSHLSAESQNERLISRLV 239 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 G +PD R++P D A R IL++EK++ L + +++ +T +NP Sbjct: 240 QGDYPDTARIIP-VLDTGFAINRFEFLAALKRVGILTSEKYQAASLALEHSRITVTVDNP 298 Query: 298 EQEEAEEILDVT---YSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 E + E LD + G +N + L + ENV + D+ S + + Sbjct: 299 ELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTSENVEVKARDAASPLVLSGEKD 358 Query: 355 QSAAYVVMPMR 365 +VMPM+ Sbjct: 359 PGYLALVMPMK 369 >UniRef50_D1B7J0 DNA polymerase III, beta subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7J0_THEAS Length = 379 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 165/369 (44%), Gaps = 8/369 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +E+ ++ G + +++++ + G + L TD++ + V V Sbjct: 1 MKLNIEKGPFIRAWNMAERCAGASSSGAS-SSVMIRSSAGRVELFATDMKTSLRCPVQGV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q G +P + D+ + P+ + LE R + SGRSR+ ST ++FP Sbjct: 60 QSDLDGEALLPVKVLGDLFKKCPD-PSFTINLEEGRGTMVSGRSRYRFSTYDVSEFPKFP 118 Query: 121 DWQSEVEF-TLPQATMKRLIEATQFSMAHQDVRY-YLNGMLFETEGEELRTVATDGHRLA 178 S +F T+ ++ I + + D YL+ + + + LR V+TD RLA Sbjct: 119 SSASAAQFGTVKAQDLRNAISEGGIAASTSDEYPQYLSCVYLQGDQGALRIVSTDSRRLA 178 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDG--GDNPLRVQIGSNNIRAHVGDFIFTSKL 236 P+ S S+++P + + EL RML G D +R+ + DF F + Sbjct: 179 YSKCPMEGSSSE-SMLLPMRAIRELDRMLSGLQEDGDVRILLDQAQAYFISDDFEFAIRR 237 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ-LKITAN 295 VDG+FP Y R++PK+ +E + A R ++ + + V + +S + + Sbjct: 238 VDGKFPQYERIIPKSCTTFMEVSRSQMIGALERLDLVVRDFNKMVAVNLSPGGSCTLRSR 297 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 +PE +A E ++ G + I FNV ++LD + L+ VR+ + I+ S Sbjct: 298 SPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDGVKGLQDSLVRLEFNGPGGHLCIKRIGSD 357 Query: 356 SAAYVVMPM 364 S Y++ P+ Sbjct: 358 SYLYLLAPL 366 >UniRef50_C8WSN6 DNA polymerase III, beta subunit n=5 Tax=Alicyclobacillus acidocaldarius RepID=C8WSN6_ALIAD Length = 370 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 166/360 (46%), Gaps = 8/360 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ +E++ L L ++ R +L +L++ G ++L+ D ++ + V Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML--VRSGRSRFSLSTLPAADFPN 118 +PG +PA+ F ++ R LP+G + + + G + L +FP Sbjct: 60 SVVDPGGVVLPAKLFAELVRRLPKGTVDVATIAPHHLSASIDVGTTHAELHGFDPEEFPE 119 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDV-RYYLNGMLFETEGEELRTVATDGHRL 177 L D + L T+ +E+ ++ A ++ R L G+ EG +L +ATDG RL Sbjct: 120 LPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVYVGYEGGKLIWMATDGLRL 179 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 A S + + + S +PR+ + EL R+LD D PL+V ++ + + +L Sbjct: 180 ARVSQTVEREM-SIRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNVQLFGRL 238 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 G +PD RV+P+ L++A R IL+ + V LYV + L++T+ + Sbjct: 239 YQGEYPDTSRVMPREFAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVLELTSRS 298 Query: 297 PEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALK-CENVRMMLTDSVSSVQIEDAAS 354 E+ A E + V + G E++I N YVLD ++A + + ++M + S D + Sbjct: 299 AERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQMQVARDRRSALFSDESD 358 >UniRef50_B8DV07 DNA polymerase III, beta subunit n=20 Tax=Bifidobacteriaceae RepID=B8DV07_BIFA0 Length = 374 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 159/377 (42%), Gaps = 16/377 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V + + + RP PIL + L+ ADGT+ L+ E+ + Sbjct: 1 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V + DI + LP + M + SG + F+L +P +++P+L Sbjct: 60 GVDESGTVVVLGKLLADISKVLPAEK-TYLSANETTMTITSGPATFTLQLMPESEYPDLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + T + + ++AH + R L G+ GEE+ +TD RL Sbjct: 119 QLPPQIG-QVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLSSTDRFRLGRA 177 Query: 181 SMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNN---IRAHVGDFIFTSK 235 S +V ++++ R +D N + + + N I I T + Sbjct: 178 SFRWTPDEADLDTAALVRGSHLVKIARSVDERANVV-IYLDPANPKLIGIANAGRISTVQ 236 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+DG FP R+ + + L A R ++++ E+ +R+ ++ QL +TA Sbjct: 237 LIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVA-ERNAPIRMVFTDQQLTLTAG 295 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ 355 ++ A+E L + G ++ + FN SY+ + L+ + +RM +T +V V+ + Sbjct: 296 GADEASAKETLQIDLDGEDITVAFNPSYLREGLSVISEPYIRMKMTTAVKPVEFNGQQDE 355 Query: 356 S------AAYVVMPMRL 366 Y+++PMR Sbjct: 356 DGEESMSYRYLLVPMRF 372 >UniRef50_Q82HZ6 Putative DNA polymerase III beta subunit n=1 Tax=Streptomyces avermitilis RepID=Q82HZ6_STRAW Length = 376 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 157/378 (41%), Gaps = 18/378 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F VER + + + L R +P+LG LLL G LS++G D E Sbjct: 1 MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSVSGFDFEAAARIGTDAE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V R+ DICR LP+G ++ LEG R V +G +RF LSTLP ++P L Sbjct: 61 TVAE-GQVLVLGRRLLDICRVLPDGP-VSCVLEGTRFTVEAGGTRFGLSTLPREEYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E ++ + + D L G+ +G+ + A+D +R AV Sbjct: 119 -VPPEPYGSVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTLAASDRYRYAVR 177 Query: 181 SMPIGQSLPSHSV---IVPRKGVIELMRMLDGGDNPLRVQIGS---NNIRAHVGDFIFTS 234 ++ + V ++P + ++++ R L +R+ I G Sbjct: 178 TLGWQPEAAADGVVEALLPARRLLDIARSLARS-GDVRIGFDRAAGGLIGFEGGRMRTVV 236 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS-ENQLKIT 293 +L++GR P Y + E C L +A R A+++ E VRL S + + Sbjct: 237 RLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVA-EANSPVRLDFSAPDGTVLL 295 Query: 294 ANNPEQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE-- 350 + A + L SG E+ FN Y+LD LN+ + VR+ L + + Sbjct: 296 GAGYGDDVAAQRLPAVLSGAEEVTAAFNPGYLLDALNSFEAPRVRLELLGAGQRTLLTAV 355 Query: 351 ---DAASQSAAYVVMPMR 365 + +++M +R Sbjct: 356 ADGGEPDTAHRHLLMSVR 373 >UniRef50_Q8D3I6 DnaN protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3I6_WIGBR Length = 369 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV-ADGTLSLTGTDLEMEMVARVAL 59 MKF++ RE++L LQQ+ ++PI+GN+L+ V + ++ +TGTDLE E+ ++ L Sbjct: 1 MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + EPG TTV +K DI + P+ + I L+ E++ + +S+F L TLP +FPNL Sbjct: 61 ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNEKLFILCKKSKFVLCTLPYKNFPNL 120 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++W+ +++ + + +K+LIE+T FS+A+QD+R YLNGML E + +R+V+T+GHRL+ Sbjct: 121 NNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIRSVSTNGHRLSK 180 Query: 180 CSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + I +++ + I+PR GV L+R+L+ + + + IG +IR ++ +I T+KL++ Sbjct: 181 SKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILTTKLLE 240 Query: 239 GRFPDYRRVLPKN--PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296 G FP+Y+ + KN L C +LK R +++S +K + + L + +N L I N Sbjct: 241 GEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVIS-DKSKCINLNLKKNLLIINIKN 299 Query: 297 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 QE AEE L+ Y G EMEI N Y+LD LN ++ + V++ +T+S S++ + D Sbjct: 300 FNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESKRVKIFVTNSYSAIILADEIYNY 359 Query: 357 AAYVVMPMRL 366 ++++MPMRL Sbjct: 360 TSHIIMPMRL 369 >UniRef50_D2R8A9 DNA polymerase III, beta subunit n=3 Tax=Planctomycetaceae RepID=D2R8A9_9PLAN Length = 372 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 168/370 (45%), Gaps = 8/370 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +R+ L+ Q + R IL N+ L V + ++ TD++M + + V Sbjct: 1 MKIVCQRDKLVSAFQTAAMFAPARSPKAILQNVRLDVTNEGCTMMATDMDMGVRVNLEGV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G +P F I R A + ++ +VR RS F L + +FP + Sbjct: 61 EVESTGTALLPVLHFGAILRE-SSDATLKIETTSRGTMVRGDRSEFRLQSEDPEEFPIVA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ + A +K++I T+F+ + RY L G+L E G++L V TDG RLA Sbjct: 120 LFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVLIELHGDKLIAVGTDGRRLAKM 179 Query: 181 SMPIGQ----SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 P + ++ I+ + R + DN +++ S+++ F S+L Sbjct: 180 EGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISENDNTVQLAARSSDVLLKTERATFYSRL 239 Query: 237 VDGRFPDYRRVLPKNPD-KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 V+GRFP +R V P+ D ++ +AA+++++ RG+ ++ L ++A Sbjct: 240 VEGRFPRWRDVFPRRQDAIKIDLTVGPFFSVLRQAAVVTSQDSRGIDFTFADGTLTLSAV 299 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCEN-VRMMLTDSVSSVQIEDAAS 354 + ++ + ++Y+G+ + + + +V D L L E + + + + S+ A Sbjct: 300 TSDAGQSRVEMPISYTGSAITVTLDHRFVADFLKVLSPEQTIVLEIESAESAAVFT-ADD 358 Query: 355 QSAAYVVMPM 364 + YVVMP+ Sbjct: 359 SAYGYVVMPL 368 >UniRef50_C1SNE0 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNE0_9BACT Length = 351 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 151/353 (42%), Gaps = 4/353 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F ++ + +Q + + +L N+L+ ++L TD+++ ++ V Sbjct: 1 MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIP-V 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TV +K DI + +P+G+ I +G ++ + SG+S F LST+ FP + Sbjct: 60 SVEETGTATVSGKKLLDIIKEIPDGSVIDFSFDGSKINIDSGKSSFKLSTISHEIFPTMA 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + E + + + L++ T F ++ + G G++L A D R+A Sbjct: 120 EITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGDKLEISAADFQRIATS 179 Query: 181 SMPIGQSLPSHSVI-VPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 S+ + + +I +PRK V+EL+++L D + ++ I +G SKL++ Sbjct: 180 SVKFDEEYSNEFMINIPRKTVMELLKIL-DEDEYVEIETDRKQIIFTIGQVKIFSKLIEK 238 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 ++ + + R + +++E GV L + + E Sbjct: 239 YIKSITKLFANDLPLQAKLNRAEFLDVIKRVSAITSEVTHGVVLSFKPGTFTVYSLETEY 298 Query: 300 EEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 E + D Y+G ++I FN +V ++++ + + + + + I Sbjct: 299 GTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTDYFYLHMVGERNPAVIIP 351 >UniRef50_C5JAN5 DNA polymerase III subunit beta n=1 Tax=uncultured bacterium RepID=C5JAN5_9BACT Length = 372 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 180/373 (48%), Gaps = 12/373 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FTV R+ ++ L V + + LP+L + LL+ A +++ GTDL++ + Sbjct: 1 MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDIVISEECR-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 Q G+ VP DI + L ++ E ++ +R GRS F LS LPA FP++ Sbjct: 60 QTQIEGSLCVPGVLLHDIVKRLEGYDTLSFSHED-QLFLRCGRSEFRLSVLPAEQFPDVS 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG--EELRTVATDGHRLA 178 F + A +K++I+ + M D LN + T +L V+TD H+LA Sbjct: 119 QLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQLA 178 Query: 179 VCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFI------ 231 + + + + L ++V RK + E+ R+L + +V +G+++ R Sbjct: 179 LSKISLEKKLDLQTGLVVGRKAITEIRRLLLDDNAK-QVTLGASHARIQCDVVTDDLVIM 237 Query: 232 FTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLK 291 FT++LVDG +P+Y +V+ + + +L+ A R ++ + +G+ L S N + Sbjct: 238 FTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNLMT 297 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 +TA + + +E L++ + G I N Y+L+++ + E V + + ++ I+ Sbjct: 298 MTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDTEQVEIHADNPHEAMHIKP 357 Query: 352 AASQSAAYVVMPM 364 + Y++MP+ Sbjct: 358 FGLEYPHYMIMPL 370 >UniRef50_D2MK63 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK63_9BACT Length = 281 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 146/279 (52%), Gaps = 9/279 (3%) Query: 97 MLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLN 156 + +++GR F + LP+ DFP L + E LP + +LI T F++ D RY LN Sbjct: 3 VTIKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLN 62 Query: 157 GMLF----ETEGEELRTVATDGHRLAVCSMPIGQSLP-----SHSVIVPRKGVIELMRML 207 G+L E E +R V TDGHRLA+ + VIVP+K E+ R+L Sbjct: 63 GLLIVVTTEGESPMIRLVGTDGHRLAMAEQKLETDAKAPVEQEQKVIVPKKAAAEIRRLL 122 Query: 208 DGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAF 267 + G + + N + + TS+L++G +P+Y++V+PK +K + A + L+ A Sbjct: 123 EEGGDEPMIGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEGAL 182 Query: 268 ARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDV 327 R ++LS K V+L S+ + + +++P+ EA + + ++G E GFN Y+LDV Sbjct: 183 RRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLLDV 242 Query: 328 LNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 L ++ E V + + S+S I + + VVMP+++ Sbjct: 243 LGVMESETVVLNMEASLSPCLIREEDNPLFQAVVMPVKV 281 >UniRef50_A6AHE8 DNA polymerase III, beta subunit (Fragment) n=1 Tax=Vibrio cholerae 623-39 RepID=A6AHE8_VIBCH Length = 250 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 162/247 (65%), Positives = 199/247 (80%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFT+ER HL+KPLQQVSG LGGR +LPILGNLLL+V + LS+T TDLE+E+++RV L Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G TVPARKF DICRGLP+ A I V LEG+R+ VRSGRSRFSL+TLPA+DFPN++ Sbjct: 61 GEFEAGCITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE 120 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 DWQSEV+ +L QA ++ LIE TQFSMA+QDVRYYLNGMLFE +G LR+VATDGHR+AV Sbjct: 121 DWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVA 180 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 +G +IVPRKGV+EL+++LD + P+ +QIG +N+RA V F+FTSKLVDGR Sbjct: 181 QAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGR 240 Query: 241 FPDYRRV 247 FPDYRRV Sbjct: 241 FPDYRRV 247 >UniRef50_B5CVF7 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5CVF7_9BACE Length = 372 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 165/371 (44%), Gaps = 6/371 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGT-LSLTGTDLEMEMVARVAL 59 M+ V + LL L+ V + + TLP N L + + + +T + + V Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + A+ D + + E E E M+V+ +F++ +P + Sbjct: 61 KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEKE-MIVKYANGKFTMPIEDGKQYPEM 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 + S F L + + QF A+ ++R +NG+ F+ + E+ V TDG RLA+ Sbjct: 120 NIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLEKTSYVGTDGSRLAM 179 Query: 180 CSMPIGQSLPS-HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 +P + I+P K L ++ L V++ N++ + ++++ Sbjct: 180 VELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLVCRMIE 239 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 GR+P+YR V+P+N K + + L A R ++ N V L ++ L ITA++ + Sbjct: 240 GRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLITAHDFD 299 Query: 299 QEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ-- 355 ++ E + G +EIGF ++++++N++ E++ + +TD + + + Sbjct: 300 FSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDISISMTDPSRAAVLSRCDEEER 359 Query: 356 SAAYVVMPMRL 366 S Y++MPM + Sbjct: 360 SLTYLLMPMSI 370 >UniRef50_Q1J2H7 DNA polymerase III, beta subunit n=4 Tax=Deinococci RepID=Q1J2H7_DEIGD Length = 360 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 178/369 (48%), Gaps = 12/369 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V ++ L + L + + R + P+L L ++ ++ L+L+GT+LE+++ V Sbjct: 1 MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + P + +PA F I R L G + ++L G + VR+G S F L T +P L Sbjct: 60 EVQAPQSFVIPAHLFAQIVRNL-GGELVELELTGGELSVRAGGSDFKLQTGDLEAYPPLS 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + +L A + R + + +++ +++ + G+ E R VA+DG+R+A+ Sbjct: 119 -FPTHTDVSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARVVASDGYRVAIR 177 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 P S ++IVP + EL+R+L D R G + KL+DG Sbjct: 178 DFP--ASGDGRNLIVPARSADELIRVLK--DGEARFTYGEGLLSVTTDRVRMNLKLLDGE 233 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPEQ 299 FPDY RV+PK+ + LK+A R A+L+++ V VSE +L++ A + Sbjct: 234 FPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEGKLRLAAE-GDY 292 Query: 300 EEAEEILDVTYSG--AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 A++ LDV G M + FN +VLD L ++ + ++ + S S + Sbjct: 293 GRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGD-AELLFSGSTSPAIFRASGGGDY 351 Query: 358 AYVVMPMRL 366 V++ +R+ Sbjct: 352 MAVMVTLRV 360 >UniRef50_D2PYX2 DNA polymerase III, beta subunit n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX2_9ACTO Length = 382 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 75/377 (19%), Positives = 150/377 (39%), Gaps = 19/377 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ E++ L + + V+ L RP P+L +LL ++ GTD + A +A Sbjct: 1 MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGTTIAGTDQAIANRAGLA-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 EPG P R +I + LP G+ + ++ +++ SG + ++L +P +F L Sbjct: 60 SVDEPGTCLAPGRMLAEIVKLLPPGS-LRLETVDNALVLTSGTATYALPLMPVEEFAPLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 E + + S DV L+G+ +++ V+TD +RL + Sbjct: 119 ALPDEHSAEVEPEEFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVELVSTDRYRLGIA 178 Query: 181 SMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRV----------QIGSNNIRAHVGD 229 +P+ + V+VP K + +L+R PLR+ G Sbjct: 179 RVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDATFGLRNAV 238 Query: 230 FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 +++ G + YRR++P L L++ R A+++ + ++ + Sbjct: 239 RSTCLRVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVA-AGMTPIWFDLTGDD 297 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 L++ A +P E L +G + I F + + D +++ + + + V I Sbjct: 298 LRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTSQLCVAFAGARKPVLI 357 Query: 350 EDAASQ-----SAAYVV 361 A + +V+ Sbjct: 358 TGATADGAPAGDYRHVL 374 >UniRef50_A8ZRY7 DNA polymerase III, beta subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZRY7_DESOH Length = 377 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 162/379 (42%), Gaps = 15/379 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +VE++ +++ L V G G R +L I N+L++ +S++ TD+E Sbjct: 1 MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYP-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR----SGRSRFSLSTLPAADF 116 G + AR+F++I + + + + + + + R ++ + F Sbjct: 60 TIENEGTIAINARQFYEIVKKIDSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119 Query: 117 PNLDDWQSEVEFTLPQATMKRLIE-ATQFSMAHQDVRYYLNGMLFETEGE----ELRTVA 171 P L + A K +I AT + + + R ++ G E + ++R V+ Sbjct: 120 PQLPVIADVSYIDVNSADFKNMILWATVITSSGTEKRAHVIGANLEYIKDGKIKKIRMVS 179 Query: 172 TDGHRLAVCSMPI---GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVG 228 TDG RL P S I+P+K + EL + L + +++ N Sbjct: 180 TDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKD-EGTIQIGTRDNYFIVKNN 238 Query: 229 DFIFTSKLVDGRFPDYRRVLPKN-PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 + I L+ G +P+ + ++ LK R +IL+ + ++GV + Sbjct: 239 NEIIYINLLSGEYPNLETLFSDEKGRTEIKINRKKLKDMLERMSILTTDNYKGVIFTFEK 298 Query: 288 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 347 N L I A NP++ E+ E +D+ Y +++ FN Y +D +N ++ + V + L + + Sbjct: 299 NILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFIDAVNLIEDDEVCLKLKEDQAPC 358 Query: 348 QIEDAASQSAAYVVMPMRL 366 + ++MPM++ Sbjct: 359 IVCGGKHPENINIIMPMKI 377 >UniRef50_B9K2Q2 DNA polymerase III beta subunit n=1 Tax=Agrobacterium vitis S4 RepID=B9K2Q2_AGRVS Length = 378 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 5/366 (1%) Query: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62 F V R +L L V + R +PIL N+LL L L+GT++ +E+ L++ Sbjct: 7 FRVHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLES 66 Query: 63 HEPGATTVPARKFFDICRGLPEGAEIAVQLEG--ERMLVRSGRSRFSLSTLPAADFPNLD 120 T+ + DI + E AEI + ++ V+SGRSRF L+TL A FP + Sbjct: 67 ASGNPLTLSGKALLDIVKSFSEVAEIEFSFDDLRGQVRVKSGRSRFLLATLHADQFPTIA 126 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG--EELRTVATDGHRLA 178 S + ++ I ++++ R YL+G+ E ++ VA DGH LA Sbjct: 127 SLASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNLA 186 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 V P I+P K + + R+ +V+I I+ D TSKL+D Sbjct: 187 VVRFPCEAGTTFPGAIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKLID 246 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKFRGVRLYVSENQLKITANNP 297 +PDY +PK+ + L A R ++ ++K ++L S L+++ Sbjct: 247 AVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMAAT 306 Query: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 + EEA E + Y+G ++ IGFN Y+ D L+++K +V + L S + Sbjct: 307 DGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTDVAINLLTESSPGLLTPTVGTDE 366 Query: 358 AYVVMP 363 YVV P Sbjct: 367 LYVVYP 372 >UniRef50_A5CBW4 Chromosomal replication initiation protein n=6 Tax=Orientia tsutsugamushi RepID=A5CBW4_ORITB Length = 432 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 93/404 (23%), Positives = 184/404 (45%), Gaps = 39/404 (9%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLL----QVADGTLSLTGTDLEMEMVARV 57 ++ ++ + L L + IL N+ L + L ++ TD ++ + ++ Sbjct: 19 NIKLDTKNFSRVLNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78 Query: 58 ALVQPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEGERMLVRSGRS-RFSLSTLPAAD 115 + + T+P + +I + +P + I + + + ++ G F+L+TLP Sbjct: 79 PIKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKMVQIKGGEYLEFNLATLPINL 138 Query: 116 FPNLDDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG-EELRTVATD 173 FP +++ + + + ++IE T+F+++ ++ RY LNG+ ++ + L VATD Sbjct: 139 FPVIEELTDVDFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLHSKDYKSLIAVATD 198 Query: 174 GHRLAVCSMPIG------QSLPSHSVIVPRKGVIELMRMLDG---GDNPLRVQIGSNNIR 224 GHRLA I + VI+PRK + EL ++ + +++ SN I+ Sbjct: 199 GHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSNKIQ 258 Query: 225 AHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284 + SKL+DG FP+Y +P N K + + L ++ R + ++ EK + V L Sbjct: 259 FDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIDRVSTIAVEKSKIVILD 318 Query: 285 VSENQLKITANNPEQEEAEEIL--------------------DVTYSGAE-MEIGFNVSY 323 + + + I A+ Q +A+E+L Y G + + I FN Y Sbjct: 319 LDHHAITIRAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFNAKY 378 Query: 324 VLDVLNALKCENVRMMLTDSVSSVQIEDAA-SQSAAYVVMPMRL 366 +LDVL+ + + DS+S I+ + SA +++MP+ + Sbjct: 379 LLDVLSVCNNIKIPIEFKDSISPALIQFEEKNTSATFIIMPVSV 422 >UniRef50_P21174 DNA polymerase III subunit beta (Fragment) n=17 Tax=Actinomycetales RepID=DPO3B_MICLU Length = 310 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 145/314 (46%), Gaps = 7/314 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKFTVER+ L + + L RP +P+L LL+ G +S+ D E + Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIE-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G V R DI R LP A++ V+L+G ++LV SRFSL+T+P D+P L Sbjct: 60 DVETAGQVLVSGRLLNDIVRSLP-QAQVTVELDGGKVLVTCRSSRFSLATMPVGDYPALP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + T+ A + + + D L + E EG+ + +ATD +RLA+ Sbjct: 119 ELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITFLATDRYRLAMK 177 Query: 181 SMPIGQSLPSH--SVIVPRKGVIELMRML-DGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + + PS S+++ + + E+ + L GGD + + ++ + G TS LV Sbjct: 178 EIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTSVLV 237 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 DG +P R + P++ L +A R A+++ E+ +R+ +E Q+ + A Sbjct: 238 DGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLDAGTG 296 Query: 298 EQEEAEEILDVTYS 311 + A E + T Sbjct: 297 DDASANESVPCTLE 310 >UniRef50_B7KMQ3 DNA polymerase III, beta subunit n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMQ3_CYAP7 Length = 479 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 70/380 (18%), Positives = 161/380 (42%), Gaps = 20/380 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ T+ + L L++V + RPT PILGN +LQ +G L+++ +L + + + Sbjct: 1 MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLK-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEG-----ERMLVRSGRSRFSLSTLPAAD 115 + G TVPA+ + LP + E + + ++ S++ + L + Sbjct: 60 EVSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDE 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 +P++ ++ T L+ + + + + L G+ + +L TDGH Sbjct: 120 YPDIPSLDESETISIKMKTFIELLNPVLPTYSEDETKQVLVGVHLVGKNNKLELATTDGH 179 Query: 176 RLAVCSMPIGQSLP------SHSVIVPRKGVIELMRMLDGGD--NPLRVQIGSNNIRAHV 227 RL+V + + + K + L + + D L++ ++ ++ Sbjct: 180 RLSVTGALLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWNKELVKFNL 239 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 287 + T++L+ G +P+Y ++P L + +A R +L+ +K + + ++ Sbjct: 240 TSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDKN-IIVIEANK 298 Query: 288 N--QLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVS 345 N L +T + E + E + ++ +++G N Y+++ + AL +++ M + S Sbjct: 299 NLQTLTVTTFDTEVGQGSETIHAEFA-LNLKMGVNGKYLIEAIKALDAKSLTMNINTPTS 357 Query: 346 SVQIEDAASQ--SAAYVVMP 363 + + ++MP Sbjct: 358 PAVLVPSECTLARCLVLIMP 377 >UniRef50_Q058G0 DNA polymerase III, b subunit n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q058G0_BUCCC Length = 368 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 204/368 (55%), Gaps = 2/368 (0%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F +++ ++++ + P PIL N+++++ + L LT ++LE+E+ A + Sbjct: 1 MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60 Query: 61 --QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 ++ G + +K +ICR + + A + ++ ++M + S F L+T+ +FP Sbjct: 61 FFILYKSGCVAISGKKILNICRNISKDAILHFKIINKKMRICILNSLFELNTMICTNFPI 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLA 178 +D+ + EF + + +K +I FS+A+ D+R LNG+L E + L V TDG+RL+ Sbjct: 121 FNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNNLYGVTTDGYRLS 180 Query: 179 VCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 V + I ++ + S+I+ +K ++EL R+++ + ++V I +N + + + + +K++D Sbjct: 181 VYKIAINLNIKNFSIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILLKTKILD 240 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G FP+Y V+ K + LK++ ++ +IL N F+GV L +N+L IT+ N E Sbjct: 241 GNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLIITSKNQE 300 Query: 299 QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAA 358 E++ + + ++ NV Y+LD+LN L E + + +SS+QI+ + Sbjct: 301 DEKSYDSFIIDNKKIKISFHINVFYLLDILNVLDVEVITISFRIPISSIQIQSDKKKEIL 360 Query: 359 YVVMPMRL 366 Y++MP++L Sbjct: 361 YIIMPLKL 368 >UniRef50_A6Q665 DNA polymerase III, beta subunit n=4 Tax=Epsilonproteobacteria RepID=A6Q665_SULNB Length = 355 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 67/365 (18%), Positives = 158/365 (43%), Gaps = 13/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +++ + L + L + I ++L + + TD E+ + + Sbjct: 1 MKIRAQKQIIESILINLQPFLEKKDASQITSHILFSSQNDKCIVKATDSEIGLQIVTDHI 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ T +K DI R L + I L+ ++V+ S+F L T +P Sbjct: 61 LIESEGSFTANGKKLLDIIRILKDDEIIMEILDN-TLIVKQKHSKFKLPTFDPNAYPAFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + TL ++ + ++ ++ + ++ LNG L + + V TD RLA+ Sbjct: 120 SVDEKPQITLDSLSLIQNLKKISPAIDTNNPKFELNGALINIKHDSTDLVGTDTRRLAIA 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S+P S S+IVP+K ++E+ ++ + + N+ ++ F ++L++G+ Sbjct: 180 SIPGNNS-EELSLIVPKKAILEIQKLFLD---QINIYYDETNLIITNENYFFYTRLINGK 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY+R++P + + + + +S E +++ + + + + + + Sbjct: 236 FPDYQRIIPASVKHSITLPKKEMIDSIKMITTISQE----IKMTLLSDAIIFNSLSADNV 291 Query: 301 EAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ +++ + E+ FN Y+LD ++ + + + ++ ++ Sbjct: 292 EAKTEIEIGTGLNEKYELSFNSRYILDFISQIDKNEFLLEFNEPSLPFIVK---DENFIT 348 Query: 360 VVMPM 364 ++MP+ Sbjct: 349 IIMPI 353 >UniRef50_A9BHL7 DNA polymerase III, beta subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHL7_PETMO Length = 370 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M F ++ L +Q S + + PIL + L V D L + TDL+ + + Sbjct: 1 MSFEIDTRVLKNAVQLTSNAVSRKTANPILKGIKLAVEDDELHIYATDLQTGFHKWLKVK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E +T V F +I L I + L+G + + G S F L T+ +FP+L Sbjct: 61 DSDENFSTVVEQTIFLEILSNLTSD-TITITLDG-VLKISGGNSVFRLPTMDPDEFPSLA 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRY--YLNGMLFETE-GEELRTVATDGHRL 177 + L + + +I+ F LN + ++ G L VATD +RL Sbjct: 119 FEVTGNSILLDRTIITNMIDKVVFCALKDSSSLSRNLNAVYWDFRQGGFLNLVATDSYRL 178 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHV--GDFIFTS 234 A+ + ++ K + EL +L +RV + I + Sbjct: 179 ALSESKLEDDNILSPFLLSLKSMDELKTILSSAKTEKVRVVQSGSQILFDFEEDNNQLIY 238 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 ++D FP+Y ++P++ ++A R +I + + + L + + +++ A Sbjct: 239 NVIDAEFPNYLSIIPESFITKIKAKTSEFLAIMKRMSITAGSEEYTL-LNIEDGRIQFYA 297 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 ++P+ EA+E +DV G +EI ++ Y + L ++ ++D ++ Sbjct: 298 SSPDVGEAKEEIDVEQEGKNIEIAYSPRYFREALERIETVEFEFDISDEEKPTILKPLED 357 Query: 355 QSAAYVVMPMR 365 S +++MP R Sbjct: 358 NSYMFIIMPKR 368 >UniRef50_C9RC59 DNA polymerase III, beta subunit n=2 Tax=Ammonifex degensii KC4 RepID=C9RC59_AMMDK Length = 386 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 20/381 (5%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLL--QVADGT---LSLTGTDLEMEMVAR 56 + V++E L K L + +P +P LG +L+ + + +++T TDL+ ++VA Sbjct: 9 RVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVAS 68 Query: 57 VALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 + G +PA++ FD+ R LPE Q E++LV L+ + +F Sbjct: 69 LQ-AHLEGEGELWLPAKETFDLVRRLPECTLELGQAGPEQVLVSYPGGEARLTGMNPEEF 127 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEG-EELRTVATDGH 175 P +++ + LP + + ++ A + G+ L ATDGH Sbjct: 128 PAVNEQEDGYT-ALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSGGLTFAATDGH 186 Query: 176 RLAV---CSMPIGQSLPS-HSVIVPRKGVIE---LMRMLDGGDNPLRVQIGSNNIRAHV- 227 RLAV S S +VP + E L ++L + + + G + Sbjct: 187 RLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLLGKEPDRVLL--GRHTASFVWP 244 Query: 228 GDFIFTSKLVDGRFPDYRRVLPKNPD-KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 G+ FT +L+D +FPD+R+ LP+ L + L RA ++ V L V Sbjct: 245 GEAEFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVVLLVK 304 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSVS 345 E + E E +E +D G ++ + FN Y+L+ L L VR+ L S Sbjct: 305 EGEEVRLEARSEAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVLDSAAEVRVGLYGPAS 364 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 + + +V+P+RL Sbjct: 365 PATVTVPGDERYLALVLPVRL 385 >UniRef50_B3ZXM6 DNA polymerase III, beta subunit n=1 Tax=Bacillus cereus 03BB108 RepID=B3ZXM6_BACCE Length = 377 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 170/380 (44%), Gaps = 18/380 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+F++ + L+ L +VS +PILG + ++ + T+ L G++ E + ++ Sbjct: 1 MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60 Query: 61 Q---PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 + GA +P + DI R LP G + + V + S+FSL+TLP+ ++P Sbjct: 61 DNLSVEKEGAIVIP-KTISDIVRKLPNGEICFKLQKKGLLDVSTKNSKFSLNTLPSEEYP 119 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 N + + + + A + + +E T + A D R L G+ + +++ AT+GH L Sbjct: 120 NFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGIEIKITNKKIAFSATNGHLL 179 Query: 178 AVCSMPIGQSLPSHS-----VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 + C + + IVP K + + ++ + + L + N + Sbjct: 180 SQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFNN--DTLTLGFEENAVTLFSSTQYI 237 Query: 233 TSKLVDGRFPDYRRV--LPKNPDKHLEAGCDLLKQAFARAAILSN--EKFRGVRLYVSEN 288 ++L++G FPD++ P++ L + + I+ + E + + Sbjct: 238 KTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASIMYENS 297 Query: 289 QLKITANNPEQEEAEEILDVTYSG--AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 +L ++ NN Q E T +G ++++GFNV+Y+L+ L +L E V + + Sbjct: 298 ELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSGEEVTLGYIGDIKP 357 Query: 347 VQIEDAASQSAAYVVMPMRL 366 + + + +++P+RL Sbjct: 358 IILNGNREEEFK-LMLPVRL 376 >UniRef50_A8Z6B4 DNA polymerase III, beta subunit n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z6B4_SULMW Length = 366 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 167/368 (45%), Gaps = 6/368 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAD-GTLSLTGTDLEMEMVARVAL 59 MKF LLK L+ + + LPIL L++ L++T +DLE+ M ++ + Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60 Query: 60 VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + G+ +P + DI + +PE ++ ++ + +++S + ++P Sbjct: 61 NSIN-YGSAAIPYKILIDILKNIPEQPLTFIKEIDNKLKIIYQNGEYNISIYSSEEYPKY 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAV 179 ++ + + + +I T F++ + D+R +NG+LFE + V+T+ L Sbjct: 120 SILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNTTILVK 179 Query: 180 CSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDG 239 + S I+ +K + L L+ D + + N L++G Sbjct: 180 YTRKDILSNNKIKFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIICSLING 239 Query: 240 RFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ 299 +P+Y ++ +K L + + R S + + L +S+NQ KI++ + Sbjct: 240 IYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISSWDYNN 298 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED--AASQSA 357 +A E L +Y G ++IGFN +++D+L+ + C++++ + D+ SS + + + Sbjct: 299 -KAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDIKFEILDNKSSCKFTPNLSNIEEI 357 Query: 358 AYVVMPMR 365 ++MP++ Sbjct: 358 LILIMPIK 365 >UniRef50_B3QWU6 DNA polymerase III, beta subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QWU6_CHLT3 Length = 377 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 169/379 (44%), Gaps = 17/379 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+ +HL + + L + T ++ L++ LSL TD ++ + + V Sbjct: 1 MKFSSSIKHLSEAVNNTVLALPAKATDARYESINLKLEQNKLSLFATDGDISLTLQ-TNV 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML-----VRSGRSRFSLSTLPAAD 115 + + GA ++ A+KF D+ R + + E E +++ R + +S + Sbjct: 60 ESSDSGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFE 119 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 + Q ++ F + + + LI+ T F+ + +R + G+LFE E E +R V+TDGH Sbjct: 120 EESAGSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIRAVSTDGH 179 Query: 176 RLAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGDFIF 232 RL + +IVP + + + ++ D + + I +N IR +G+ I Sbjct: 180 RLVKITRNHNTGAEGKLKIIVPSRVLGIVRKLFSE-DGDVEISIDANSQRIRFRMGETIL 238 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 LV +P+Y V+P DK + L + R S+ VR +V EN L + Sbjct: 239 LCSLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSSRGD--VRFHVQENSLAV 296 Query: 293 TANNPEQE-EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 +A N ++ A+E + Y + IGFN ++ D L L E V + + I Sbjct: 297 SAENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNAEEVIFQFSSPTRAAIILP 356 Query: 352 A----ASQSAAYVVMPMRL 366 A++ +VMP+R+ Sbjct: 357 KQEEDANEDVLMLVMPVRI 375 >UniRef50_Q3B6Y8 DNA polymerase III, beta subunit n=10 Tax=Chlorobiaceae RepID=Q3B6Y8_PELLD Length = 378 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 165/376 (43%), Gaps = 14/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK T L + +V+ + + N+ L + G L+L +D E+ + A+ + V Sbjct: 5 MKLTSSIRQLQDAVSKVAQAIPAKSIDQRFENINLSLEPGELTLFASDGEVSITAK-SGV 63 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA-----VQLEGERMLVRSGRSRFSLSTLPAAD 115 + + G + AR D R + + + + + + + + + R+ + L + Sbjct: 64 ESSDSGNIGIRARTLQDFLRSMYDTSVMFSIERQEISDHGTVSISTDKGRYRIPCLFQSK 123 Query: 116 FPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 P D Q ++ + + M LI+ T F+ + +R + G+LFE EG + VATDGH Sbjct: 124 -PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPAMMGVLFELEGSIITAVATDGH 182 Query: 176 RLAVCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 RL C L + V+VP + + L ++ ++ +R G + + Sbjct: 183 RLVRCRKASSVDLSEKNKVVVPARVLSILQKLAQTDSVTMQFDSERKFVRFICGSIVLDA 242 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 L+ +P+Y V+P D++L ++ + R S+ V++ + +KI A Sbjct: 243 ALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRVGRFSSIGD--VKVVLEGQMMKIMA 300 Query: 295 NNPEQEE-AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED-- 351 N + E A+E L +SG +M IGFN ++ L L +R+ L ++V Sbjct: 301 ENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALAHLDENEIRIELKSPTTAVIFRPHG 360 Query: 352 -AASQSAAYVVMPMRL 366 + + +VMP+R+ Sbjct: 361 EEENDNLIILVMPVRI 376 >UniRef50_Q2JF20 DNA polymerase III beta subunit family protein n=5 Tax=cellular organisms RepID=Q2JF20_FRASC Length = 433 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 91/434 (20%), Positives = 162/434 (37%), Gaps = 74/434 (17%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRP--TLPILGNLLLQVADGT----------------- 41 M+F+VER+ + L RP +L +LL G+ Sbjct: 1 MRFSVERDAFADATGWAARHLPNRPGPARNVLTGILLAAGHGSPASPGSAAVPLPSGSAA 60 Query: 42 ------------------------------LSLTGTDLEMEMVARVALVQPHEPGATTVP 71 L++ D E+ + A VA EPG VP Sbjct: 61 SPGSAAVPLPSGSAASPGSAAPLGAATASVLTICAYDTEVAVRAPVA-ASVDEPGRVLVP 119 Query: 72 ARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLP 131 R DI R LP + V ++G+R+++R G RF++ + ++P L + + Sbjct: 120 GRLLTDIVRSLP-ATTVDVVVDGDRLVLRCGSVRFTVPLMDPGEYPQLPSFPG-PIGEVD 177 Query: 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSH 191 + + + L + E G L VATD +RLAV +P ++ Sbjct: 178 TLGFASAVGQVAPAAGRDETMPVLTAVRMEISGRGLALVATDRYRLAVRGIPWQPTVDDP 237 Query: 192 SVI--VPRKGVIELMRMLDGGDNPLRVQIG-----SNNIRAHVGDFIFTSKLVDGRFPDY 244 + VP K + E+ R + + + + + G +L++G FP+Y Sbjct: 238 WALAHVPAKVLAEVART-PTSASRIVIGLDLDDPSGARLGLAAGGRQTIVRLIEGTFPNY 296 Query: 245 RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEE 304 R++LP+ + A A R + + +R + NQ+ A + +A E Sbjct: 297 RKLLPEAAALVVTAQTAA-LAAAVRRVAVVATRTGPLRFTFTHNQVVAEAGDGGGAQASE 355 Query: 305 ILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTD------SVSSVQIED------- 351 + V Y+G E+ + FN SY+LD L A++ + + D + + Sbjct: 356 TIPVEYAGPELSVLFNPSYLLDGLGAVEDDQATIGFVDDDPVEAAAKPAVLTGKDSGRGA 415 Query: 352 AASQSAAYVVMPMR 365 + Y++MP+R Sbjct: 416 VDEGAYRYLLMPIR 429 >UniRef50_C7H084 DNA polymerase III, beta subunit n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H084_9FIRM Length = 363 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 175/363 (48%), Gaps = 5/363 (1%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+FT ++ + + L V + R T+PIL +L++ + + + GTDLE+ +++++ + Sbjct: 1 MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLKIK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G V A+ F++I R LPEG E +++ +++ S F L L FP Sbjct: 61 N-DEVGKIIVNAKLFYEIIRKLPEGNIEFFTDESKKLHIKNLNSEFELEYLEEEKFPFAK 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + E +F+ + + +I+ + ++ + + L G+ E + V +DG+R+A+ Sbjct: 120 EVKGE-KFSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISLVGSDGYRIAIT 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 I ++VP + ++ + ++L + + IG +I+ + + KL++G Sbjct: 179 KENIINEQEK-DILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLKLLEGT 237 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITANNPEQ 299 + DY++ + + + L A R +LS EK + L + N LKI + + Sbjct: 238 YIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIET-SSDI 296 Query: 300 EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 A+E + + G + E N ++LD + + E +++ + + + IE+ + + + Sbjct: 297 GYAKEEIILDKMGEDNEFAINCKFLLDAIKNIDGEELKLKIGKNERFILIEEVENDRSQF 356 Query: 360 VVM 362 ++M Sbjct: 357 LIM 359 >UniRef50_D1WRR1 DNA polymerase III, beta subunit n=5 Tax=Streptomyces RepID=D1WRR1_9ACTO Length = 375 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 157/376 (41%), Gaps = 16/376 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG------TLSLTGTDLEMEMV 54 M+F +ER L + + L R +P+LG LLL G +L ++G D E Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 55 ARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAA 114 V + PG V R+ DIC+ LPEG + +EG R V +RF LS LP Sbjct: 61 VDVD-AEVVRPGKVLVMGRRLLDICKVLPEGP-VECAVEGSRFTVSGDGARFGLSVLPLD 118 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D+P+L ++ + + + D L G+ +G+ + ATD Sbjct: 119 DYPSLPPLP-QLRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAATDR 177 Query: 175 HRLAVCSMPI--GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIF 232 +R AV ++P + V+V + + E+ R L + V + + + Sbjct: 178 YRYAVRTLPWKATTPGETADVLVSARRLTEIARSLGRS-GLVSVALDAGSAGFEHAGTRT 236 Query: 233 TSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKI 292 T +L++GR P + ++ L +A R ++++ + V++ S + Sbjct: 237 TVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVA-DGDSPVQMAFSRADSSV 295 Query: 293 TANNP-EQEEAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE 350 T E + A + L + G E+ + FN Y+ D L + ++R++L + I Sbjct: 296 TLRAGYEDDVASQRLPASLEGAEELTVAFNPGYLADALASCTEPSLRLLLLGAGQRAMIT 355 Query: 351 DAASQS-AAYVVMPMR 365 D A +++M ++ Sbjct: 356 DEAGTDVHRHLLMSVK 371 >UniRef50_Q2B8R4 DNA polymerase III subunit beta n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8R4_9BACI Length = 368 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 170/373 (45%), Gaps = 15/373 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF +E++ L ++++ L + ++PIL +L+Q L T +D ++ RV L Sbjct: 1 MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60 Query: 61 Q----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLS--TLPAA 114 + G+ V + FD+ + L I+ +L ++++V +++ L + A Sbjct: 61 EGAVNIESEGS-AVFTKDCFDVTKKLKGS--ISFELIDQKVIVSQDKTKTRLEFGVMDAE 117 Query: 115 DFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG 174 D+P + + ++ T F+ + ++R L G+ + VATD Sbjct: 118 DYPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNFVATDS 177 Query: 175 HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 HRL + GQS + SV V K + ++++ + V NI G I+ + Sbjct: 178 HRLG--KVTTGQSEETMSVTVHAKKLEQVLKSF-DFSTEVLVFPTELNIAFANGHTIYYT 234 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+DG FPD R++PK + L + + + +S E V L ++ +++ A Sbjct: 235 RLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAISREG--IVMLSINGLFVELAA 292 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 + + EI ++ G +E+GF+ YVLD L ++ ++ + +S I+ + Sbjct: 293 LGDTAKGSREIAYESFEGESLEVGFSAKYVLDALKSIDSSSISIGFNGGMSPFVIQPLSE 352 Query: 355 Q-SAAYVVMPMRL 366 + + +++P+RL Sbjct: 353 EITELQLILPVRL 365 >UniRef50_C8PKQ5 DNA polymerase III, beta subunit n=2 Tax=Campylobacter RepID=C8PKQ5_9PROT Length = 359 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 158/367 (43%), Gaps = 14/367 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + ++ L + + S L + I +LL+ DG S+ TD E+ + + V Sbjct: 1 MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G T K + +GL + + + ++ + V+ +S++ L DFP+ Sbjct: 61 SIETEGEATANGGKLLSVIKGLSDDS-VTLETVNGALFVKQKKSKYKLPMFETRDFPSFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + F + + R ++ S+ + +Y LNG L + + L V TD RL+V Sbjct: 120 VVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNLVGTDTKRLSVY 179 Query: 181 SMPIGQSLPSHS--VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVD 238 + +++P+K + E+ ++ +++ N + A +F F +KL++ Sbjct: 180 KLITQSKAGELDTKILIPKKAIGEIQKLFSD---KIKIYYDENVLLAVSENFEFFTKLIN 236 Query: 239 GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPE 298 G+FP+Y RV+P + + D + + E +++ + ++ + + N + Sbjct: 237 GKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMCEE----MKVTIKKDGMIFESINED 292 Query: 299 QEEAEEILDVTYS-GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357 EA+ ++ T E+ G ++LD L+ ++ E + S ++ + Sbjct: 293 NSEAKTEIEATIEINGEIVFGVKNRFLLDFLSNIESEIFELDFNSSDTAFVLSA---DGL 349 Query: 358 AYVVMPM 364 V+MP+ Sbjct: 350 KTVIMPI 356 >UniRef50_C8WYB4 DNA polymerase III, beta subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYB4_ALIAD Length = 391 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 75/372 (20%), Positives = 149/372 (40%), Gaps = 18/372 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQV--ADGTLSLTGTDLEMEMVARV- 57 MK T L K L+Q+ + +L ++L++ + + + +M + + Sbjct: 1 MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLC 60 Query: 58 -----ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLP 112 + V+ G+ +PA++ +++ + I V+ +R ++ G+++F L L Sbjct: 61 VEATDSSVEIARSGSCLLPAKELYEVIKR--ANGPITVETTTDRTVITFGKTKFELVGLQ 118 Query: 113 AADF-PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVA 171 F P D T+ + RLI T ++ R L G+ L VA Sbjct: 119 PRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSQTRPILTGVQLTLADGHLSAVA 178 Query: 172 TDGHRLAVCSMPIGQ-SLPSHSVIVPRKGVIELMRML--DGGDNPLRVQIGSNNIRAHVG 228 TD RLA ++ + +++P + L L D + +G+++ G Sbjct: 179 TDALRLAQYTVSCEDVNGEDRQLVIPAVLLDTLATALPASDDDEEVTFTLGTSSCTVSWG 238 Query: 229 D--FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVS 286 D F + ++G +PD R++P+ + L A R AILS + + Sbjct: 239 DDAFHMALRGLEGTYPDTARLIPERTAHRVVVERQALLTACERVAILSEADHQRAEFRFT 298 Query: 287 ENQLKITANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKC-ENVRMMLTDSV 344 + L ++A + + AEE L+ + + ++E+ NV Y + L AL V + L + Sbjct: 299 MSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDGIAQVEIGLNGPL 358 Query: 345 SSVQIEDAASQS 356 + + Sbjct: 359 QPCLLRPVGEEG 370 >UniRef50_C5EYP3 DNA polymerase III n=3 Tax=Helicobacter RepID=C5EYP3_9HELI Length = 355 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 160/365 (43%), Gaps = 13/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M T++ L + L + + I ++ L+ D L TD EM + + + Sbjct: 1 MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 +E G TV ++ DI + L EG E+ + E + ++ +S F L A +FP Sbjct: 61 TINEQGIATVNGKQILDIIKRLKEG-EVNLYTNNENLHIKQNKSSFKLPMFNAQEFPTFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++++ + + + ++ + + + LNG L + + VATD RLA+ Sbjct: 120 EYETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKEYSYNFVATDTKRLAMV 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S + ++I P+K + E+ R+ + + NI ++IF S L++G+ Sbjct: 180 KFD-NASGNNLALIFPKKAITEIQRLFFDN---IELFYNERNIIIKSQNYIFFSHLINGK 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY ++LPK L + + ++N+ V+L N++ + + + Sbjct: 236 FPDYEKILPKEIQTELVLQKSSIIEGIKVINSVTND----VKLTFRPNEILFESLSQDNS 291 Query: 301 EAEEILDVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ +++ E+EIG N +VLD L+ + L + ++ + + + Sbjct: 292 EAQTQIEINLPITEEIEIGINSRHVLDFLSQIDSVEFIWGLNGKNAPFVLK---NGNFST 348 Query: 360 VVMPM 364 VVMP+ Sbjct: 349 VVMPI 353 >UniRef50_B9L736 DNA polymerase III, beta subunit n=2 Tax=Nautiliaceae RepID=B9L736_NAUPA Length = 350 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 167/366 (45%), Gaps = 16/366 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M +E+ + L Q+ + I ++L++ + L L TD E+ + + Sbjct: 1 MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIKANE-KLILKATDKEIGIKV-ITNA 58 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + EPG T+ ++F DI + L + EI ++ E ++ + S + L++ A++FP Sbjct: 59 EIIEPGTVTINGKRFLDIIKTL-QNKEIEIKTEENQITITQDSSIYKLTSFNASEFPEFP 117 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + + + + + I+ + + + +Y LNG LF+ GE+ V+TD RLAV Sbjct: 118 NTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDL-GEKTNFVSTDTRRLAVY 176 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 +IVP++ + E+ R++ +++ + + +F +KL++G+ Sbjct: 177 YSK--AKARDSKIIVPKRSIAEIKRVIRD---DMQIFYDDVYLILKNNEILFFTKLINGK 231 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP Y +++P++ L + +I+SNE V++ + +++ + + E Sbjct: 232 FPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISNE----VKITIKNDKIIFESISDETM 287 Query: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360 +A+ D+ + N Y++D LN ++ + + L + ++ ++ + Sbjct: 288 QAKTSFDLNTPLEDFTFAVNSRYIMDFLNVIENDTFVLGLNEPNIPFVLK---DENFITI 344 Query: 361 VMPMRL 366 VMP+ + Sbjct: 345 VMPLNI 350 >UniRef50_C9M5Q0 DNA polymerase III, beta subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Q0_9BACT Length = 361 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 154/355 (43%), Gaps = 7/355 (1%) Query: 17 VSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFF 76 R L ++ ++ L TDL+ + VQ E GA +P R Sbjct: 2 AERTTNSRVPQTSLYSVHIRCGQDGTFLEATDLKTSISVAAEGVQVVEEGAALLPVRVIG 61 Query: 77 DICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFT-LPQATM 135 ++ + + + + + + ER ++ +G++++ ++ P FP++ S+ F +P + Sbjct: 62 ELLKKI-DSEVVELSVTQERGMLVAGKNQYDVAVFPTDLFPDMPRPSSDEPFALVPSGEL 120 Query: 136 KRLIEATQFSMAHQDVRYYLNGML-FETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVI 194 R+++ + + + G + + ELR V+TDG RL++ + +S SV+ Sbjct: 121 IRVLDEGIVAGSVSEEFPRYIGACQLQCQKGELRAVSTDGRRLSLSKC-LCESGTDGSVL 179 Query: 195 VPRKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNP 252 VP + E R L D +RV + + ++ + ++ FP+Y +VL K+ Sbjct: 180 VPLAPMKEFQRFLQSVESDATVRVFTDQALVHFCLPGLEYSVRRIESSFPNYEKVLRKDF 239 Query: 253 DKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE-NQLKITANNPEQEEAEEILDVTYS 311 L L A R +L E V + +S ++ + +PE +A E L + Sbjct: 240 TSTLTVNRGLFIGALERVDLLVRENNHLVVVTLSPSGEMTLVGRSPEVGKACEHLSGMIT 299 Query: 312 GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL 366 G ++ FN +Y+LD L A + V M S + + S + Y++MP+ L Sbjct: 300 GESLKAAFNANYMLDGLRAFHGDEVYMTFNGSNGQMNMMRPGSDTFLYMLMPVNL 354 >UniRef50_Q83H56 DNA polymerase III beta chain n=2 Tax=Tropheryma whipplei RepID=Q83H56_TROWT Length = 377 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 74/377 (19%), Positives = 151/377 (40%), Gaps = 19/377 (5%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V+R L + V+ + RP PIL +L++ + ++L+ + E + Sbjct: 1 MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYETSAKVEFS-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 E G VP I + LP+ + + E E++ + G + L+ +P A++P L Sbjct: 60 NVIEGGKVLVPGTLISSISQKLPDEP-VEISKEDEKISLTCGPVNYILNLMPIAEYPPLP 118 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 + ++ ++ +P + + S A D+ + G+ E + TD +R+AV Sbjct: 119 NLENAEQYRIPSEDFVKSVSQVTTSAAKDDISAVITGINLRLSNESIELTGTDRYRVAVK 178 Query: 181 SMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNN----IRAHVGDFIFTSK 235 ++ P SVIV K + E+ + L ++ + V I ++ I G+ TS Sbjct: 179 TLNSVSGHPSDSSVIVSSKTLFEVSKTLGNLESEISVFIKNDGENKVIGFESGNKTVTSL 238 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITAN 295 L+ G +P ++ + + ++ R +++ E+ + +N +T Sbjct: 239 LISGNYPPVAKLFTEETGHYAILKTSDFLESTKRVSVVV-ERDEPIEFSFVKN--TVTIK 295 Query: 296 NPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV-----SSVQIE 350 A E ++ G E+ I ++ D L A + + +++ T V I Sbjct: 296 GSGIALASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPGPVLIT 355 Query: 351 D----AASQSAAYVVMP 363 Y++ P Sbjct: 356 PKLSNKEKIDFKYLLQP 372 >UniRef50_P34029 DNA polymerase III subunit beta n=2 Tax=Spiroplasma citri RepID=DPO3B_SPICI Length = 363 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 168/371 (45%), Gaps = 16/371 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--A 58 M ++R+ +L L +VS + + +P L +L++V ++ T +D + + + + Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + G+ + + ++ R + + +EG + +++ L+TL +AD+P+ Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVEGNLIKIKANNFDSVLNTLNSADYPH 120 Query: 119 LDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE--ELRTVATDGHR 176 L E +K +I T F++ ++ R NG+ +T+ EL ATD R Sbjct: 121 LSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATDSFR 180 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L+ + + + VI+P K + E+ R++ D + + I + K+ Sbjct: 181 LSCKKIDYSNNY-NFDVIIPGKFINEIGRLISENDQVSELLL----IIINCKQ-----KI 230 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITAN 295 ++G++PD +V+ + + L + + R ++LSNE V L + E ++ +T+ Sbjct: 231 IEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQKVLVTSF 290 Query: 296 NPEQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 E EE + D G + I FN Y+LD L A K + + + + D + I Sbjct: 291 TQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTKEITIKMIDERKPLIITANDD 350 Query: 355 QSAAYVVMPMR 365 Q+ +V+P+R Sbjct: 351 QTLQQLVLPIR 361 >UniRef50_C7NAH5 DNA polymerase III, beta subunit n=4 Tax=Fusobacteriaceae RepID=C7NAH5_LEPBD Length = 375 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 72/373 (19%), Positives = 162/373 (43%), Gaps = 11/373 (2%) Query: 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQ 61 V R+ LLK + V + +L + ++ D L GTDLE+ + + Q Sbjct: 3 HIIVNRKSLLKAITIVENAVSENKIREVLSGIYIETKDEKAILRGTDLELTINTEIE-AQ 61 Query: 62 PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 E G + + + + + + ++ E +++++S + S A +FP Sbjct: 62 VEEDGKIVIKHKLIEEFLKQISDEKITLIE-ENGKLIIQSSSTNTEFSLYNAENFPTQSP 120 Query: 122 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCS 181 + VE+ + + IE + S + +N + E E ++L+ +++D +RL Sbjct: 121 LNTGVEYIFSKQKLLNNIENVKISASTNPENLAVNCIRVEIEEDKLKLISSDTYRLTYIE 180 Query: 182 MPIGQSL---PSHSVIVPRKGVIELMRMLD-GGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 + +S + S+ VP K + L++++ + + ++ + + + ++ + Sbjct: 181 EDLEESQKGKENLSLSVPLKTIDGLVKIMKLIDEENITLKSDGSKVFFQFSNVEILTRTI 240 Query: 238 DGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLKIT 293 D +FPDY+ +L +K + R +I + E G + N+L +T Sbjct: 241 DLQFPDYKSILNNSQHNKKILLNTKDFLSVLKRTSIFVRENKESKNGGIFNFANNKLLLT 300 Query: 294 ANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + E + +E + G +++I NV ++LD ++ ++ + + L ++ SSV + D Sbjct: 301 GTS-ENAQIKEEIVTIQEGEDLKISLNVKFLLDYISTIEGKVTVLELLNNKSSVIVRDED 359 Query: 354 SQSAAYVVMPMRL 366 + + Y MP+ L Sbjct: 360 NDKSLYFTMPLAL 372 >UniRef50_A8EQT1 DNA polymerase III, beta subunit n=2 Tax=Campylobacterales RepID=A8EQT1_ARCB4 Length = 356 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 75/365 (20%), Positives = 162/365 (44%), Gaps = 14/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF + + L + + L + + I ++ L++ + L + TD E+ + + + + Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G TTV I + L I ++ ++++ +S F L T A +FP L+ Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRLKNEDII-LEATNNNLVIKQNKSTFKLPTYDANEFPVLN 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 ++ E ++ I ++ + + ++ LNG L + + +++ V+TD RLA+ Sbjct: 120 KSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQKINFVSTDTRRLAL- 178 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 S + +I+P+K +IE+ ++ ++ + N+ F +KL++G+ Sbjct: 179 SFLENMNNDEAQLIIPKKAIIEIQKLFLD---EAKISYDNTNLVISNQHTKFFTKLINGK 235 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FPDY R++P N + ++L ++ L F +++ S + + + + Sbjct: 236 FPDYERIIPSNLKHNFFLPKNVLVESIKLVTSL----FSNIKITFSSKSIIFESLDEDS- 290 Query: 301 EAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ +D+ + E + N Y+LD L+ E V++ +S + Sbjct: 291 EAKTQIDIDLNIPNEFFLAVNAKYLLDFLSMTNNEKVKIGFNESNLPFYL---EDDKFIT 347 Query: 360 VVMPM 364 +VMP+ Sbjct: 348 IVMPI 352 >UniRef50_Q2NKC4 DNA polymerase III, beta subunit n=4 Tax=Candidatus Phytoplasma RepID=Q2NKC4_AYWBP Length = 378 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 157/373 (42%), Gaps = 9/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M + ++ L+ L ++ L + PI L +Q + L L + + + + Sbjct: 1 MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENKLILEANNGNIAIKIEIKDK 60 Query: 61 --QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118 + + G R F +I + + + +E +++++ + L + +F Sbjct: 61 SLKIKKQGKIACLGRYFIEIIKKINDSLIKITVMENNFLVIKTIFCEYKLKLMDVCNFLE 120 Query: 119 LDD-WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 LD +Q F + K +I+ S + + R L G+ + L+ ATD R+ Sbjct: 121 LDFSFQKLDFFQIETHFFKNIIKEVNISTSKNEKRPILMGLNLIYQNNLLKACATDFFRM 180 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSKL 236 + + + + ++++P K + EL ++L+ + L++ + I + + F + L Sbjct: 181 SQKKINLDIKYHNFNIVIPNKSLEELSKILEHCQSKHLKIYSDAQKIFLEIDNLWFQTSL 240 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSE-NQLKI 292 ++G +P + + N + D L +A R ++L ++ ++E N ++I Sbjct: 241 LEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFYKEQINTNVIKFILTERNSIEI 300 Query: 293 TANNPEQEEAEE-ILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIED 351 ++++ A E I+ + S +I FN Y+ DVL L + V + + I Sbjct: 301 SSSSESLGTALEKIIPLKVSANSFQIAFNAKYLEDVLKVLSVKEVVFYFDNPLKPFIITT 360 Query: 352 AASQSAAYVVMPM 364 S+ ++++P+ Sbjct: 361 LEKDSSIHLILPI 373 >UniRef50_C3WBN0 DNA polymerase III beta subunit n=3 Tax=Fusobacterium RepID=C3WBN0_FUSMR Length = 376 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 167/376 (44%), Gaps = 12/376 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK +ER LK L+ V + PI+ ++ L GT+LE + + Sbjct: 1 MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLFFCGTNLETTITTEMKCK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNL- 119 + E G + + + L + + +++G +++ S S S + DFP + Sbjct: 61 EVIESGKIVFQHQLVEEYLKELKDEFVVFSEIDGN-LVIESSDSSSEFSLMNVEDFPKIL 119 Query: 120 ---DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 D Q E F + + ++E +++ + +N + E E ++L+ + TD +R Sbjct: 120 VDEDFSQKEEIFKINSIELAEILEKVKYAASSSSDNLSINCVRMENENKKLKFITTDTYR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNP-LRVQIGSNNIRAHVGDFIFTSK 235 L I + + V +P V L ++L ++ + + I + + + S+ Sbjct: 180 LVYLEKEIEKINENIDVSIPLNTVEALTKLLRSIESTDISFYFINRQIFFKMEEVLVISR 239 Query: 236 LVDGRFPDYRRVL-PKNPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLK 291 ++D FP+Y+ +L + +K L ++ + R I +NE G Y+ + +++ Sbjct: 240 IIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGATFYLEKKEMQ 299 Query: 292 ITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL-KCENVRMMLTDSVSSVQIE 350 + N E + E+L+V Y G ++I N ++ D + L K +++ + S SSV+I+ Sbjct: 300 VHGVN-EVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNKDITLEFIASNSSVKIK 358 Query: 351 DAASQSAAYVVMPMRL 366 + + YV+MP+ L Sbjct: 359 EEEANDYLYVLMPLAL 374 >UniRef50_A7HZD4 DNA polymerase III, beta subunit n=23 Tax=Campylobacteraceae RepID=A7HZD4_CAMHC Length = 356 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 162/365 (44%), Gaps = 12/365 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK V++ L + + L + I ++L+ DG LS+ TD E+ + + V Sbjct: 1 MKVIVKKGVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYKNRNV 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G T K + +GL E EI ++ G + V+ RS++ L DFP Sbjct: 61 TVIDEGYATANGSKLMNAIKGL-EDDEITLETAGNSLFVKQKRSKYKLPMYNYTDFPEFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180 +++ F + + R ++ S+ + +Y LNG L + + +++ V+TD RL++ Sbjct: 120 TIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINLVSTDTKRLSLY 179 Query: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240 ++P S + +I+P+K + E+ ++ + + +N A F F SKL++G+ Sbjct: 180 TIPNQTSTANEKIIIPKKAINEIQKLFSD---KVEIFYDANVFLAVSESFEFFSKLINGK 236 Query: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300 FP Y +++ + + D + + + + +++ + N + + + + Sbjct: 237 FPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMCD----SMKITIKNNSILFESISEDNS 292 Query: 301 EAEEILDVTYSGAE-MEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAY 359 EA+ ++ + +E +++D L+ ++ + + + ++ + Sbjct: 293 EAKTEIETSIQIENQIEFSIRNKFLMDFLSNIEENSFKFDFNNEKTAFCVSSGD---LKT 349 Query: 360 VVMPM 364 ++MP+ Sbjct: 350 IIMPI 354 >UniRef50_B3PLR8 DNA polymerase III, beta subunit n=2 Tax=Mycoplasma RepID=B3PLR8_MYCA5 Length = 365 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 65/367 (17%), Positives = 160/367 (43%), Gaps = 10/367 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA-- 58 M+ + + L + +++V+ + P +P++ +L++ D L++ ++ E+ + + Sbjct: 1 MEIKINKWLLDEAIERVAKAVDQNPFIPVMKGILVEAQDSMLTIIASNGEISIKHVIPSS 60 Query: 59 -LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 +Q PG V +I + L I+++ EG + V + R+SL+ +++P Sbjct: 61 VDMQILSPGIILVELSLLRNIVKKLDGD--ISLKSEGNLLTVTTEFDRYSLNLYDTSEYP 118 Query: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177 +D + +K + + F+ ++ + L + +L+ VAT+ +R Sbjct: 119 EIDFAVYGETLKIKWDELKSITKNVSFAASNNEANLVLCCVNISAHDGKLKFVATNKYRY 178 Query: 178 AVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237 A + I + +V + K + +L + + + I + I V I SK+V Sbjct: 179 AEETKEIDSD-ANFNVSIQAKNLKDLTAF--DFKDSVLLNISEHKIAFEVDSTIIQSKVV 235 Query: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297 + + D R++P+ L+ L ++A+++ +E ++L + + L I + Sbjct: 236 NQPYQDVSRIVPREFATCLKIEKRELNNLLSKASVIISETNNKIKLSIVDGILMIASTRD 295 Query: 298 EQEEAEEIL-DVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQS 356 E AE I + +Y G E+++ N Y+ + + + + + +T + ++ + + Sbjct: 296 EIANAEIITKNFSYDGDELKLALNSKYLREAIAVFEG-TINIHITKDKLRLVVKSDSHPN 354 Query: 357 AAYVVMP 363 + P Sbjct: 355 NIQLFTP 361 >UniRef50_C4XT11 DNA polymerase III beta subunit n=10 Tax=Desulfovibrionales RepID=C4XT11_DESMR Length = 397 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 146/388 (37%), Gaps = 25/388 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV R ++ LQ+ S + + L + L+ A +LS+ TD +E A Sbjct: 1 MQLTVFRNDIIDGLQKSSSIIPAKTGAAFLRTVWLEAAGSSLSILSTDSSLEFTGHYA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAE-IAVQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + + G V + FF++ R LP G + + +L++ G R+ L F Sbjct: 60 KVAKEGLCGVQGKSFFELVRKLPPGEISLTLDEASGNLLIKQGSRRYKLPVSDRNWFQPF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF--ETEGEELRTVATDGHRL 177 + +E T ++ +IE + ++ +D + M + + +GH+ Sbjct: 120 AAFPNEGAVTWSGDFLQEIIERVAYCISDEDTMEAMACMYLRPVADSARIEVCGLNGHQF 179 Query: 178 AVCSM---PIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDF---- 230 ++ I LP +++ +K V EL R L + + +G + Sbjct: 180 SLVGFLNDDIHAMLPPDGILIQKKYVAELKRWLTA--EEVELAMGQKRLFFRTTKRDEAA 237 Query: 231 --------IFTSKLVDGRFPDYRRV---LPKNPDKHLEAGCDLLKQAFARAAILSNEKFR 279 F+ L ++PDY L + L A R AI + + R Sbjct: 238 PEGQGSVETFSLPLSFYQYPDYNAFVSKLATDGVSTLAIDRLECIDALERVAIFNTDNNR 297 Query: 280 GVRLYVS-ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRM 338 +L + + E EA E L+ ++G ++ F + D+L + V + Sbjct: 298 CASFLFDGPGELSLKSQGQEAGEATETLECVFTGDLDKVAFPTKDLTDILGHFESAKVSL 357 Query: 339 MLTDSVSSVQIEDAASQSAAYVVMPMRL 366 LT + I + ++MPM++ Sbjct: 358 TLTGAEGPCGIRGEDDTDSLVIIMPMKI 385 >UniRef50_C0GS25 DNA polymerase III, beta subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GS25_9DELT Length = 386 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 159/377 (42%), Gaps = 14/377 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MK + +E ++ + + S + + L + + ++ + TD +E Sbjct: 1 MKIIIYKEDFVEGISKASNLIPTKTGAAYLRTIWFKTDMDSVRIMSTDSNVEFTGEYR-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE-GERMLVRSGRSRFSLSTLPAADFPNL 119 + E G P RK D+ R L G E + + V+ + F L ++ FP L Sbjct: 60 EIVEEGLIGTPGRKISDLIRKLKSGPITMYSDEKNDILYVQQEKRHFKLPLSESSWFPEL 119 Query: 120 DDWQSEVEFT-LPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRL 177 D++ E +P K ++E + F ++ D + + + ++ A +GH+L Sbjct: 120 DEFPEENALAGIPGIKFKDILEKSLFCISDDDTMQGMTCLKIAPGDENQVEFCAFNGHQL 179 Query: 178 AVCSMP---IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHV--GDFIF 232 ++ + + LP +++ +K +++L + + D +++ I + I F Sbjct: 180 SLYIHESSGLREILPEKGIMIAKKYLMDLRKWVPESD--IQITITDSKIFFRTLDKKECF 237 Query: 233 TSKLVDGRFPDYRRVLPKNPDK---HLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQ 289 + L +FP+YR + +K L + L + R I + + + + + + Sbjct: 238 SLPLNMHQFPNYRDFINNYSEKLGGPLVTTKNDLMDSLERILIFNTDSQMSTLMRLGQEE 297 Query: 290 LKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQI 349 + +T+ + EAEE++ +Y G E+ FN +L++L + +NV M + + +I Sbjct: 298 IYMTSTAVDSGEAEEVVGCSYQGNLKEVVFNTKSLLEILGHIDDDNVVMKFSGPIEPCRI 357 Query: 350 EDAASQSAAYVVMPMRL 366 Q + MP+++ Sbjct: 358 NGENDQKYYVMTMPVQI 374 >UniRef50_B8DQA6 DNA polymerase III, beta subunit n=4 Tax=Desulfovibrionales RepID=B8DQA6_DESVM Length = 388 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 157/380 (41%), Gaps = 17/380 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M +++E +++ LQ+ + + + L ++ L+ +G+LS+ TD +E A Sbjct: 1 MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYA-A 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA-VQLEGERMLVRSGRSRFSLSTLPAADFPNL 119 + +PG V R F D+ R LP G + E +L+ GR ++ L + F N Sbjct: 60 EIEQPGLAGVQGRAFVDLLRKLPGGQITLKLDGESGNLLIEQGRRKYKLPVNDSVWFQNF 119 Query: 120 DDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFET-EGEELRTVATDGHRLA 178 ++ ++ ++ LI+ F ++ +D + + + + +GH+ A Sbjct: 120 SEFPADGSVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQNAIEACGLNGHQFA 179 Query: 179 VCSMPIGQ---SLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGD--FIFT 233 + + LP +++ +K + EL + L G + + + I + GD F+ Sbjct: 180 MLRFTHDELMAMLPPEGILIQKKYLGELKKWL--GTDEVELNISEKRLHFRTGDGKETFS 237 Query: 234 SKLVDGRFPDYRRVLPK---NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQL 290 L ++PDY L K + LE A R I + + R + N Sbjct: 238 LPLSYYQYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSNRCTYFDLDGNGG 297 Query: 291 KI----TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSS 346 +A + A E L+ TYSG +I F +++++ + E + + LT S Sbjct: 298 GGDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRSERLGLTLTGSEGP 357 Query: 347 VQIEDAASQSAAYVVMPMRL 366 + + ++MPM++ Sbjct: 358 CGLTGSDDSEYTVIIMPMKI 377 >UniRef50_UPI0001BC56D7 DNA polymerase III, beta chain n=2 Tax=Fusobacterium RepID=UPI0001BC56D7 Length = 373 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 157/375 (41%), Gaps = 13/375 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ V R LK L+ V + PIL + ++ L L GT+LE + V+ Sbjct: 1 MQVIVNRNEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP--- 117 + + G + + L E EI ++++GE ++V G + ST P D+P Sbjct: 61 EVVKEGKVAFQYPLIDEYMKELKE-EEIQIRMDGEALMVEGGDAVSEFSTFPYEDYPKAF 119 Query: 118 -NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 N + + EV + + + + +FS D ++ + E E+ V TD +R Sbjct: 120 ENFEKQEEEVLLRMNSIELATIFDKLKFSAGSTD-NPAIHCVRVEGRDGEIHFVTTDTYR 178 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236 L + +P + V ++ G + ++V + D S L Sbjct: 179 LTYLHKSF-SLQEDFQMSLPLETVEACSKIFRGLEAEVKVYFDKKFAHFLIEDIHIVSSL 237 Query: 237 VDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAIL---SNEKFRGVRLYVSENQLKI 292 ++ FP Y+ +L N DK + + L R I + E G ++++ LKI Sbjct: 238 IELTFPAYQTILSNGNYDKIMGISTESLISILRRVIIFVRNNEESKYGATFHLADGVLKI 297 Query: 293 TANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE-NVRMMLTDSVSSVQIED 351 N + + E + V Y GA +++ N Y+ D + L+ + + + + S +SV++ + Sbjct: 298 K-GNSDIAKINEEMAVDYQGAPLKVSLNTKYLFDFVQNLEKDTELSLEMLSSKTSVKVHE 356 Query: 352 AASQSAAYVVMPMRL 366 + Y++MP+ L Sbjct: 357 KGKEDYIYILMPLAL 371 >UniRef50_A4V7F9 Putative DNA polymerase subunit n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7F9_PSEFS Length = 369 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 11/373 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF+++ L L+ V+ + R + G+ L+ V L L+ + + +M + Sbjct: 1 MKFSIKCSDLAHYLKTVAR-VPQRKATDVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59 Query: 61 QPHEPG---ATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFP 117 G A VPA KF + L + A +++Q ++++ + RSRF+L+T+PA FP Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEPKLVISAARSRFTLATIPADHFP 119 Query: 118 NLDDWQSEV--EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175 ++ + E + +T+ + F A DVR LNG+LF+ + + A DG Sbjct: 120 VMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTLAAADGL 179 Query: 176 RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 RL V +P+ P + I+P + ++ + + G +RV + R + +K Sbjct: 180 RLGVTEVPVT-GEPMQNFILPSSCIEDVCQFV--GTGSVRVSTSGSMARFTREGGVLHTK 236 Query: 236 LVDGRFPDYRRVLPKNPDKHL-EAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 LV+G+FPDYR++L + D A AR +LS VRL VS + I + Sbjct: 237 LVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSAESISIQS 296 Query: 295 NNPEQEE-AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA 353 + E+ A+++L Y+ +EIGFN +++ +L + ++ + + S + Sbjct: 297 VGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEIDVIFSGAASGTLLRARD 356 Query: 354 SQSAAYVVMPMRL 366 S ++V+MP+RL Sbjct: 357 LPSHSFVLMPVRL 369 >UniRef50_C7M115 DNA polymerase III, beta subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M115_ACIFD Length = 366 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 13/370 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 MKF ER+ L LQ S L R +L + + G L + G + ++ + + + + Sbjct: 1 MKFLCERDELASALQAASRALSSRSSL---AGVRWTLRGGELEVEGRESDLAIRSVLGAM 57 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 G+ PA D+ R +P + V +E +++RSGR+ SL LP + P + Sbjct: 58 --GTEGSFQTPASLAVDLVRTMPSDQ-VEVVVEDASVVLRSGRAEVSLQLLPTLELPGIG 114 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVR-YYLNGMLFETEGEELRTVATDGHRLAV 179 + T+P A + + I + A D R + MLF + + LR VATDG RLA+ Sbjct: 115 EGT-TPSATVPAAALAQGIRQVAVAAARDDGRDLIYSSMLFSSTNDGLRLVATDGTRLAL 173 Query: 180 CSMPIGQ--SLPSHSVIVPRKGVIELMRMLDGGD-NPLRVQIGSNNIRAHVGDFIFTSKL 236 + + V++P + V EL R++ G + + V IG + VG ++L Sbjct: 174 RDIANLSVAGSEARDVVIPTRAVRELERLVTGAGVDEIHVGIGERDAVFVVGTTTLATRL 233 Query: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE--KFRGVRLYVSENQLKITA 294 VD F DYRR++ K L L A R ++ E +++ ++ +++ Sbjct: 234 VDEPFRDYRRLVEATYPKKLLLDRLSLVDAMRRLRRMAKEARNSSSIQMNMTPTACELSV 293 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 P + E+LD ++ AE I F+ + D ++ ++ + +R+ ++ + + A + Sbjct: 294 RIPSVGQVHEVLDANFNDAEFTINFDPDMLADGVDGVEGDVIRLEFIEANRAACVSSADT 353 Query: 355 QSAAYVVMPM 364 + Y++MP+ Sbjct: 354 REYLYILMPI 363 >UniRef50_A5TXE7 DNA-directed DNA polymerase III beta subunit n=11 Tax=Fusobacterium RepID=A5TXE7_FUSNP Length = 381 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 160/381 (41%), Gaps = 17/381 (4%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M V R++ L ++ V + PIL + +V + TGT+L+ + + + Sbjct: 1 MHIRVNRQNFLSAIRIVEKSIKENKIKPILSCIYAKVKGNKIYFTGTNLDTTIKTSIDVN 60 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + G + + + + + G + + + S A D+PN Sbjct: 61 EVIREGEVAFYCSIIDEYLKEIKDEFIVLRVENGNILFIETEDSITEYDVFSAEDYPNTF 120 Query: 121 D----WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 + ++ +F +P + + E FS D +N + E+ + L V+T+ +R Sbjct: 121 ENIILNENNFKFEMPSQELVTIFENVLFSADTPD-NIAMNCIRIESILKHLHFVSTNTYR 179 Query: 177 LAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPL-RVQIGSNNIRAHVGDFIFTSK 235 L I + +P SV VP + +++++ G DN + ++ ++ D +K Sbjct: 180 LTFLKKNIDKDIPDFSVSVPADTISSIIKIIKGLDNEVIKIYKEDAHLYFQYKDTTIITK 239 Query: 236 LVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILS---NEKFRGVRLYV-----S 286 L++ RFP+Y +L + DK L + L R I S +E + Sbjct: 240 LIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEFKHGEEN 299 Query: 287 ENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE-NVRMMLTDSVS 345 N++ I+A N E E LDV + G +++I N Y+L+ + + E + + S S Sbjct: 300 NNKMSISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEKELVLEFMYSNS 358 Query: 346 SVQIEDAASQSAAYVVMPMRL 366 +V++ + + Y++MP+ L Sbjct: 359 AVKVYEKDNDEYIYILMPLAL 379 >UniRef50_A3EQC1 DNA polymerase III, beta chain n=3 Tax=Leptospirillum sp. Group II RepID=A3EQC1_9BACT Length = 387 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 25/386 (6%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ TV++E L LQ+V+ + + I +L++ D L TD + V Sbjct: 1 MEITVDQEAFLDGLQRVALLAERKNLVQIGSFILIEARDQKAILFATDNQTGGRFEVP-C 59 Query: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120 + PG TTV +K + R LP G +LE + R + L + ++ Sbjct: 60 EVRTPGKTTVAGKKLHQLFRELPSGKVSLTRLENGSTRIERERLMYDLKGIDPEEYVGFP 119 Query: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFE-TEGE---ELRTVATDGHR 176 + +++ F + + LI T + + + +NG+LF L V TDGHR Sbjct: 120 EIKADYSFLVSLEQIAGLIRKTLPFVLDDESKP-MNGVLFHRVREGSTVRLNIVGTDGHR 178 Query: 177 LAVCSMPIGQS-------LPSHSVIVPRKG----VIELMRMLDGGDNPLRVQIGSNNIRA 225 L ++ +G+ I+ +K + L L G + V + Sbjct: 179 LHHGTVLLGEDAGYDLAGQTESRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVNPKYATF 238 Query: 226 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYV 285 G F + ++L+ FP+YR P + +E LL+ + R +++S +K + Sbjct: 239 RWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVS-DKKAEIVFSW 297 Query: 286 SENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMM------ 339 L ++ N E E+ E L V G+ + FN + +L + E +RM Sbjct: 298 DARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMDAVMDPD 357 Query: 340 -LTDSVSSVQIEDAASQSAAYVVMPM 364 S A + YV+MP+ Sbjct: 358 PAKSSSMPSIWSCAEEPDSRYVIMPL 383 >UniRef50_P24117 DNA polymerase III subunit beta n=4 Tax=Mycoplasma mycoides group RepID=DPO3B_MYCCT Length = 375 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 72/371 (19%), Positives = 164/371 (44%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARV--- 57 M F++ R LL L + + + + P L + L V + +++ T + + + Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60 Query: 58 -ALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 + ++ + G + + ++ R L + + +E +++++ S FS+ L + D+ Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIKTNNSDFSIGVLNSEDY 120 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + + +EF L +K+ I SM + + L G+ + + TD R Sbjct: 121 PLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNNQAIFSTTDSFR 180 Query: 177 LAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 ++ + I + +P K +EL ++LD +N L++ I I + + IF S Sbjct: 181 ISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDNVIFQSN 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITA 294 L+DG+FP+ + P + + + + +R +++++ V + V+E++++ + Sbjct: 240 LIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDKIEFKS 299 Query: 295 NNPEQEEAEEILD--VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + EE D V + I FN +++D + L + + + L +S + I + Sbjct: 300 FISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLSEDRIELKLINSTKPIVINNV 359 Query: 353 ASQSAAYVVMP 363 + V++P Sbjct: 360 YDEHLKQVILP 370 >UniRef50_Q6F2A8 DNA polymerase III, beta chain n=1 Tax=Mesoplasma florum RepID=Q6F2A8_MESFL Length = 373 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 67/371 (18%), Positives = 153/371 (41%), Gaps = 9/371 (2%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 M+ ++ + LL L + S + + P L + ++V+ L + ++ A + Sbjct: 1 MRLSINKSVLLNELTKASKLIELKNVNPALQGVYMEVSFDKLVIVSSNTSTSFKAELNNE 60 Query: 61 Q----PHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 +PG V + ++ R L + + + +S +S L +F Sbjct: 61 NSDLIIEQPGRILVKPKFILELLRKLDSEFVTLSTFAENELEIITEKSNLKVSILNVEEF 120 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + ++ +E ++ K + T S+ + + L GM + + ++ V TD R Sbjct: 121 PLIGFVENGLELSIDSQEFKSTLTQTISSINEWNQKVVLAGMNLKIKDNKISFVTTDLFR 180 Query: 177 LAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 +++ + + ++ +I+P K +IEL +++ ++ I N + + + S Sbjct: 181 VSLKEIILNEATNQEVDIIIPYKTLIELRNLIENVKE-FKIIIHDTNATFKLDNDLLQST 239 Query: 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEK-FRGVRLYVSENQLKITA 294 L+DGR+P+ P + LE L + +R + +++ V L + ++ + + Sbjct: 240 LIDGRYPNVHSAFPTTHEIKLELKAKTLLKVLSRFELTNDQNITSVVNLEIQQSGIILKT 299 Query: 295 NNPEQEEAEEIL-DVTYSG-AEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDA 352 E + EE + Y G + + I FN Y+++ + + + + + V I A Sbjct: 300 TIAETVKYEEKFTEYKYEGSSNLNINFNTKYLIEAIRSFDDQLIHLTFNSQNKPVLITGA 359 Query: 353 ASQSAAYVVMP 363 + VV+P Sbjct: 360 QKRDLKQVVLP 370 >UniRef50_Q74P03 DNA polymerase III, beta subunit n=19 Tax=Bacillus cereus group RepID=Q74P03_BACC1 Length = 370 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 69/374 (18%), Positives = 140/374 (37%), Gaps = 12/374 (3%) Query: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEM----VAR 56 MKFT+ R ++ L++ S + + +P L +LL + L G+D + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 57 VALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADF 116 V EPG A + E +V S + +FS T+ ++ Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKIVESKKKQFSFCTMDHEEY 120 Query: 117 PNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176 P + E +L Q + T ++ D R L G+ ++ ++ ++ATD HR Sbjct: 121 PEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDDKFFSIATDAHR 180 Query: 177 LAVCSMPIGQSL--PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 LA + V++P K + +++ + N I + I+ S Sbjct: 181 LARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGESIIYQS 240 Query: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 +L+ G +PD R++P ++ + K + + S+ V + + + Sbjct: 241 RLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSS---LIVLTSEGKESIHLKP 297 Query: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS 354 N + A + + NV Y+L L + E + + + + + + A Sbjct: 298 QNSQVGTASVEIPCN-QVEAFTLACNVEYLLQALQTITSETIAIKMISNQRPIVVVGAED 356 Query: 355 Q--SAAYVVMPMRL 366 S +++P+R+ Sbjct: 357 TTHSNLQLILPVRV 370 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.160 0.423 Lambda K H 0.267 0.0489 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,167,673,341 Number of Sequences: 3077464 Number of extensions: 92659388 Number of successful extensions: 278340 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 878 Number of HSP's successfully gapped in prelim test: 221 Number of HSP's that attempted gapping in prelim test: 272145 Number of HSP's gapped (non-prelim): 1272 length of query: 366 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 236 effective length of database: 640,326,036 effective search space: 151116944496 effective search space used: 151116944496 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.6 bits)