Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	S	D	I	R	K	D	A	E	V	R	M	D	K	C	V	E	A	F	K	T	Q	I	S	K	I	R	T	G	R	A	S	P	S	L	L	D	G	I	V	V	E	Y	Y	G	T	P	T	P	L	R	Q	L	A	S	V	T	V	E
Secondary structure
SS confidence
Disorder		?																										?	?																		?	?							?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	S	R	T	L	K	I	N	V	F	D	R	S	M	S	P	A	V	E	K	A	I	M	A	S	D	L	G	L	N	P	N	S	A	G	S	D	I	R	V	P	L	P	P	L	T	E	E	R	R	K	D	L	T	K	I	V	R	G	E
Secondary structure
SS confidence
Disorder			?																							?	?				?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	E	Q	A	R	V	A	V	R	N	V	R	R	D	A	N	D	K	V	K	A	L	L	K	D	K	E	I	S	E	D	D	D	R	R	S	Q	D	D	V	Q	K	L	T	D	A	A	I	K	K	I	E	A	A	L	A	D	K	E	A
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.
Sequence		E	L	M	Q	F
Secondary structure
SS confidence
Disorder				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ek8 chain A Region: 1 - 185 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 100% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1dd5 chain A Region: 2 - 185 Aligned: 184 Modelled: 184 Confidence: 100.0% Identity: 40% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1is1 chain A Region: 1 - 184 Aligned: 184 Modelled: 184 Confidence: 100.0% Identity: 70% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1wqg chain A domain 1 Region: 2 - 184 Aligned: 183 Modelled: 183 Confidence: 100.0% Identity: 40% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1eh1 chain A Region: 2 - 183 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 45% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1ge9 chain A Region: 2 - 184 Aligned: 179 Modelled: 183 Confidence: 100.0% Identity: 46% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 3lf9 chain A Region: 1 - 184 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 63% PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c Phyre2 PDB 1y69 chain 8 Region: 66 - 185 Aligned: 113 Modelled: 120 Confidence: 100.0% Identity: 74% PDB header:ribosome Chain: 8: PDB Molecule:ribosome recycling factor; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans Phyre2 PDB 1wih chain A Region: 30 - 106 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 31% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 2rrn chain A Region: 60 - 119 Aligned: 60 Modelled: 60 Confidence: 69.8% Identity: 17% PDB header:protein transport Chain: A: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: solution structure of secdf periplasmic domain p4 Phyre2 PDB 2c1n chain A Region: 103 - 175 Aligned: 72 Modelled: 73 Confidence: 66.2% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:14-3-3 protein zeta/delta; PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3 Phyre2 PDB 1in0 chain A domain 2 Region: 71 - 101 Aligned: 31 Modelled: 31 Confidence: 65.5% Identity: 19% Fold: Ferredoxin-like Superfamily: YajQ-like Family: YajQ-like Phyre2 PDB 1in0 chain B Region: 71 - 101 Aligned: 31 Modelled: 31 Confidence: 58.8% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yajq protein; PDBTitle: yajq protein (hi1034) Phyre2 PDB 1o9d chain A Region: 103 - 175 Aligned: 73 Modelled: 73 Confidence: 56.7% Identity: 16% Fold: alpha-alpha superhelix Superfamily: 14-3-3 protein Family: 14-3-3 protein Phyre2 PDB 2npm chain B Region: 103 - 175 Aligned: 73 Modelled: 73 Confidence: 56.2% Identity: 11% PDB header:protein binding Chain: B: PDB Molecule:14-3-3 domain containing protein; PDBTitle: crystal structure of cryptosporidium parvum 14-3-3 protein2 in complex with peptide Phyre2 PDB 3gas chain A Region: 87 - 167 Aligned: 54 Modelled: 54 Confidence: 52.2% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:heme oxygenase; PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme Phyre2 PDB 2o8p chain A domain 1 Region: 103 - 172 Aligned: 69 Modelled: 70 Confidence: 48.5% Identity: 13% Fold: alpha-alpha superhelix Superfamily: 14-3-3 protein Family: 14-3-3 protein Phyre2 PDB 1iwg chain A domain 5 Region: 33 - 58 Aligned: 26 Modelled: 26 Confidence: 47.9% Identity: 23% Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Phyre2 PDB 2o02 chain A domain 1 Region: 103 - 175 Aligned: 66 Modelled: 73 Confidence: 47.8% Identity: 15% Fold: alpha-alpha superhelix Superfamily: 14-3-3 protein Family: 14-3-3 protein Phyre2 PDB 1iwg chain A domain 6 Region: 31 - 62 Aligned: 32 Modelled: 32 Confidence: 46.9% Identity: 22% Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Phyre2 1 d1ek8a_ 2 d1dd5a_ 3 d1is1a_ 4 d1wqga1 5 d1eh1a_ 6 d1ge9a_ 7 c3lf9A_ 8 c1y698_ 9 d1wiha_ 10 c2rrnA_ 11 c2c1nA_ 12 d1in0a2 13 c1in0B_ 14 d1o9da_ 15 c2npmB_ 16 c3gasA_ 17 d2o8pa1 18 d1iwga5 19 d2o02a1 20 d1iwga6 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ek8a_ 100.0 100 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 2 d1dd5a_ 100.0 40 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 3 d1is1a_ 100.0 70 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 4 d1wqga1 100.0 40 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 5 d1eh1a_ 100.0 45 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 6 d1ge9a_ 100.0 46 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 7 c3lf9A_ 100.0 63 PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c 8 c1y698_ 100.0 74 PDB header:ribosome Chain: 8: PDB Molecule:ribosome recycling factor; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans 9 d1wiha_ 99.9 31 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 10 c2rrnA_ 69.8 17 PDB header:protein transport Chain: A: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: solution structure of secdf periplasmic domain p4 11 c2c1nA_ 66.2 15 PDB header:signaling protein Chain: A: PDB Molecule:14-3-3 protein zeta/delta; PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3 12 d1in0a2 65.5 19 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 13 c1in0B_ 58.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yajq protein; PDBTitle: yajq protein (hi1034) 14 d1o9da_ 56.7 16 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 15 c2npmB_ 56.2 11 PDB header:protein binding Chain: B: PDB Molecule:14-3-3 domain containing protein; PDBTitle: crystal structure of cryptosporidium parvum 14-3-3 protein2 in complex with peptide 16 c3gasA_ 52.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:heme oxygenase; PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme 17 d2o8pa1 48.5 13 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 18 d1iwga5 47.9 23 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 19 d2o02a1 47.8 15 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 20 d1iwga6 46.9 22 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 21 c3ff5B_ not modelled 46.5 23 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 22 c3m20A_ not modelled 43.5 14 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 23 c3htkA_ not modelled 41.2 23 PDB header:recombination/replication/ligase Chain: A: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex 24 c2kl8A_ not modelled 36.1 15 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 25 c1j1dF_ not modelled 34.0 14 PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form 26 d1zj8a1 not modelled 32.7 9 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 27 d1tz9a_ not modelled 30.0 14 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 28 d1zh5a1 not modelled 27.3 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 29 c3mafB_ not modelled 27.2 16 PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) 30 d1lp1b_ not modelled 26.0 30 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 31 c2k14A_ not modelled 25.9 10 PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis 32 c3mc6C_ not modelled 25.6 7 PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 33 d1fc2c_ not modelled 25.4 30 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 34 c3bdkB_ not modelled 25.3 20 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 35 d1deeg_ not modelled 24.8 15 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 36 c3onjA_ not modelled 24.4 24 PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain 37 d2jwda1 not modelled 24.2 21 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 38 c1zdbA_ not modelled 21.1 35 PDB header:igg binding domain Chain: A: PDB Molecule:mini protein a domain, z38; PDBTitle: phage-selected mini protein a domain, z38, nmr, minimized2 mean structure 39 d2arza1 not modelled 20.8 19 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 40 d1r9ja1 not modelled 20.8 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 41 c3b50A_ not modelled 20.6 11 PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. 42 c3gyyC_ not modelled 20.3 12 PDB header:transport protein Chain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state 43 c2etnA_ not modelled 18.4 20 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 44 c1mkyA_ not modelled 18.0 13 PDB header:ligand binding protein Chain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains 45 d2fqma1 not modelled 17.9 23 Fold:Phosphoprotein oligomerization domain-like Superfamily:Phosphoprotein oligomerization domain-like Family:Phosphoprotein oligomerization domain-like 46 d1b64a_ not modelled 17.7 18 Fold:Ferredoxin-like Superfamily:eEF-1beta-like Family:eEF-1beta-like 47 d2dula1 not modelled 17.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 48 d2dexx2 not modelled 16.8 36 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Peptidylarginine deiminase Pad4, N-terminal domain 49 c2l5gB_ not modelled 16.1 19 PDB header:transcription regulator Chain: B: PDB Molecule:putative uncharacterized protein ncor2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 50 c1j1eC_ not modelled 15.6 14 PDB header:contractile protein Chain: C: PDB Molecule:troponin i; PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form 51 d2f23a1 not modelled 14.5 17 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 52 c3axtA_ not modelled 14.4 18 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 53 d1grja1 not modelled 13.9 19 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 54 c2zzxD_ not modelled 13.6 11 PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate 55 c2b9bA_ not modelled 12.8 25 PDB header:viral protein Chain: A: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the parainfluenza virus 5 f protein in its metastable,2 pre-fusion conformation 56 d1q8ka2 not modelled 12.6 16 Fold:Ferredoxin-like Superfamily:eIF-2-alpha, C-terminal domain Family:eIF-2-alpha, C-terminal domain 57 c2vpnB_ not modelled 12.6 9 PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata 58 c2pfyA_ not modelled 12.4 13 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 59 d1whra_ not modelled 12.2 21 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 60 c3nqbB_ not modelled 11.9 17 PDB header:hydrolase Chain: B: PDB Molecule:adenine deaminase 2; PDBTitle: crystal structure of adenine deaminase from agrobacterium tumefaciens2 (str. c 58) 61 c2wxxC_ not modelled 11.5 24 PDB header:hormone Chain: C: PDB Molecule:angiotensinogen; PDBTitle: crystal structure of mouse angiotensinogen in the oxidised form 62 c3fxbB_ not modelled 11.4 9 PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha 63 d1scfa_ not modelled 11.3 17 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 64 c1scfA_ not modelled 11.3 17 PDB header:hormone/growth factor Chain: A: PDB Molecule:stem cell factor; PDBTitle: human recombinant stem cell factor 65 c3b4uB_ not modelled 11.1 25 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 66 c1x4rA_ not modelled 10.9 23 PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein 67 c3fkkA_ not modelled 10.9 33 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 68 c2pfzA_ not modelled 10.8 10 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 69 d2i52a1 not modelled 10.8 16 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 70 d2akja1 not modelled 10.8 20 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 71 c2p4vA_ not modelled 10.7 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 72 c1yv0I_ not modelled 10.7 16 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 73 d1vcsa1 not modelled 10.7 20 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 74 c3f9tB_ not modelled 10.4 13 PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution 75 d1s0aa_ not modelled 10.3 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 76 d2ieca1 not modelled 10.2 19 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 77 d2qsba1 not modelled 9.7 37 Fold:Bromodomain-like Superfamily:Ta0600-like Family:Ta0600-like 78 d1lfup_ not modelled 9.4 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 79 c3okgB_ not modelled 9.4 24 PDB header:dna binding protein Chain: B: PDB Molecule:restriction endonuclease s subunits; PDBTitle: crystal structure of hsds subunit from thermoanaerobacter2 tengcongensis 80 d1elua_ not modelled 9.2 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 81 c3lciA_ not modelled 9.0 17 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 82 c3mb2J_ not modelled 9.0 10 PDB header:isomerase Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 83 c3hz7A_ not modelled 8.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 84 d1edla_ not modelled 8.5 15 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 85 d2qzga1 not modelled 8.5 32 Fold:Bromodomain-like Superfamily:Ta0600-like Family:Ta0600-like 86 c2hl2A_ not modelled 8.4 15 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate 87 c3gabC_ not modelled 8.4 12 PDB header:hydrolase Chain: C: PDB Molecule:dna mismatch repair protein mutl; PDBTitle: c-terminal domain of bacillus subtilis mutl crystal form i 88 c3e6yB_ not modelled 8.3 17 PDB header:signaling protein Chain: B: PDB Molecule:14-3-3-like protein c; PDBTitle: structure of 14-3-3 in complex with the differentiation-inducing agent2 cotylenin a 89 c2ql8A_ not modelled 8.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative redox protein; PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution 90 c1q2iA_ not modelled 8.2 41 PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells 91 d1qtwa_ not modelled 8.2 7 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 92 c2l5qA_ not modelled 8.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of bvu_3817 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr159 93 c1grjA_ not modelled 8.1 18 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 94 c1kmiZ_ not modelled 7.9 26 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 95 c2x7vA_ not modelled 7.9 9 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc 96 c2y7cA_ not modelled 7.9 19 PDB header:transferase Chain: A: PDB Molecule:type-1 restriction enzyme ecoki specificity protein; PDBTitle: atomic model of the ocr-bound methylase complex from the2 type i restriction-modification enzyme ecoki (m2s1). based3 on fitting into em map 1534. 97 c2ogfD_ not modelled 7.8 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0408; PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372 98 c3g0sA_ not modelled 7.7 21 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 99 d1qo5b_ not modelled 7.6 29 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase

Binding site prediction

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0