BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (126 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_D2TPE9 Putative exported protein n=1 Tax=Citrobacter ro... 157 7e-38 UniRef50_P64438 Uncharacterized protein ybgS n=103 Tax=Enterobac... 148 7e-35 UniRef50_A7MIX9 Putative uncharacterized protein n=2 Tax=Cronoba... 82 5e-15 UniRef50_D2T360 Uncharacterized protein ybgS n=2 Tax=Erwinia pyr... 72 6e-12 UniRef50_B2VBT0 Putative uncharacterized protein n=1 Tax=Erwinia... 50 2e-05 >UniRef50_D2TPE9 Putative exported protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TPE9_CITRO Length = 134 Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 101/134 (75%), Positives = 112/134 (83%), Gaps = 8/134 (5%) Query: 1 MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDN 60 MKMTKLA+LFLTATLSLASGAALAAD+GAQTNNGQANAAADAGQVAPDA++NVAPNN+D Sbjct: 1 MKMTKLASLFLTATLSLASGAALAADTGAQTNNGQANAAADAGQVAPDAKQNVAPNNLDG 60 Query: 61 NGVNTGSGGTML----HSDGSSMNNDG----MTKDEEHKNTMCKDGRCPDINKKVQTGDG 112 +NTG+ T S G+S DG MTKDE HKNTMCKDGRCPD+NKKV+TGDG Sbjct: 61 TNINTGNTNTNTSGAQQSPGTSTTQDGMTDDMTKDEVHKNTMCKDGRCPDVNKKVETGDG 120 Query: 113 INNDVDTKTDGTTQ 126 NN+VDTKTDGTTQ Sbjct: 121 TNNNVDTKTDGTTQ 134 >UniRef50_P64438 Uncharacterized protein ybgS n=103 Tax=Enterobacteriaceae RepID=YBGS_SALTI Length = 128 Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 78/103 (75%), Positives = 93/103 (90%), Gaps = 2/103 (1%) Query: 26 DSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSG--GTMLHSDGSSMNNDG 83 +S AQ++NGQAN+AA+AGQVAPDAR+NVAPN+V+NN +NT TM H DGS+MN+DG Sbjct: 26 ESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDG 85 Query: 84 MTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ 126 MTKDEEHKNTMCKDGRCPDINKKV+TG+G+NNDV+TKTDGTTQ Sbjct: 86 MTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ 128 >UniRef50_A7MIX9 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MIX9_ENTS8 Length = 167 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 3/68 (4%) Query: 1 MKMTKLATLFLTATLSLASGAALAADSGAQT---NNGQANAAADAGQVAPDARENVAPNN 57 MK+ KL +LFLTATL+LASGAALAADSG+ T + G ANAAA+AGQVAPDA++NVAPN Sbjct: 38 MKLNKLTSLFLTATLTLASGAALAADSGSSTGGSDTGSANAAANAGQVAPDAKQNVAPNG 97 Query: 58 VDNNGVNT 65 VDNN +NT Sbjct: 98 VDNNNINT 105 >UniRef50_D2T360 Uncharacterized protein ybgS n=2 Tax=Erwinia pyrifoliae RepID=D2T360_ERWPY Length = 110 Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 15/124 (12%) Query: 3 MTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNG 62 M K A + LTA ++L SGA +AA + NG ANAAADAG +AP A++N+APN+VDN+ Sbjct: 2 MNKFAMVLLTAAMTLGSGAVMAA-----SGNGSANAAADAGAIAPGAKDNLAPNHVDNSK 56 Query: 63 VNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTD 122 +NT + H + G++ ++ HKNT CK+G+C +IN KV G DTKT+ Sbjct: 57 INTEGSSALKHKK----KHHGLSANDVHKNTQCKEGKCTNINTKVGNG------ADTKTN 106 Query: 123 GTTQ 126 GT+Q Sbjct: 107 GTSQ 110 >UniRef50_B2VBT0 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VBT0_ERWT9 Length = 91 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 11/98 (11%) Query: 3 MTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNG 62 M K A + LTA ++L SGA +AA + NG ANAAADAG +AP A+ N+APN VDN+ Sbjct: 1 MKKFAIVLLTAAMTLGSGAVMAA-----SGNGSANAAADAGAIAPGAKSNLAPNRVDNSK 55 Query: 63 VNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRC 100 +NT S T H +D KNT CK+ +C Sbjct: 56 INTESSSTPHHKKKHHGASDAQ------KNTQCKEAKC 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TPE9 Putative exported protein n=1 Tax=Citrobacter ro... 87 2e-16 UniRef50_P64438 Uncharacterized protein ybgS n=103 Tax=Enterobac... 84 1e-15 UniRef50_D2T360 Uncharacterized protein ybgS n=2 Tax=Erwinia pyr... 74 2e-12 UniRef50_B2VBT0 Putative uncharacterized protein n=1 Tax=Erwinia... 61 2e-08 UniRef50_A7MIX9 Putative uncharacterized protein n=2 Tax=Cronoba... 58 8e-08 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D2TPE9 Putative exported protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TPE9_CITRO Length = 134 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 99/134 (73%), Positives = 109/134 (81%), Gaps = 8/134 (5%) Query: 1 MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVD- 59 MKMTKLA+LFLTATLSLASGAALAAD+GAQTNNGQANAAADAGQVAPDA++NVAPNN+D Sbjct: 1 MKMTKLASLFLTATLSLASGAALAADTGAQTNNGQANAAADAGQVAPDAKQNVAPNNLDG 60 Query: 60 ---NNGVNTGSGGTMLHSDGSSMNNDG----MTKDEEHKNTMCKDGRCPDINKKVQTGDG 112 N G + S G+S DG MTKDE HKNTMCKDGRCPD+NKKV+TGDG Sbjct: 61 TNINTGNTNTNTSGAQQSPGTSTTQDGMTDDMTKDEVHKNTMCKDGRCPDVNKKVETGDG 120 Query: 113 INNDVDTKTDGTTQ 126 NN+VDTKTDGTTQ Sbjct: 121 TNNNVDTKTDGTTQ 134 >UniRef50_P64438 Uncharacterized protein ybgS n=103 Tax=Enterobacteriaceae RepID=YBGS_SALTI Length = 128 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 78/103 (75%), Positives = 93/103 (90%), Gaps = 2/103 (1%) Query: 26 DSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSG--GTMLHSDGSSMNNDG 83 +S AQ++NGQAN+AA+AGQVAPDAR+NVAPN+V+NN +NT TM H DGS+MN+DG Sbjct: 26 ESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDG 85 Query: 84 MTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ 126 MTKDEEHKNTMCKDGRCPDINKKV+TG+G+NNDV+TKTDGTTQ Sbjct: 86 MTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ 128 >UniRef50_D2T360 Uncharacterized protein ybgS n=2 Tax=Erwinia pyrifoliae RepID=D2T360_ERWPY Length = 110 Score = 73.7 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 15/124 (12%) Query: 3 MTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNG 62 M K A + LTA ++L SGA +AA + NG ANAAADAG +AP A++N+APN+VDN+ Sbjct: 2 MNKFAMVLLTAAMTLGSGAVMAA-----SGNGSANAAADAGAIAPGAKDNLAPNHVDNSK 56 Query: 63 VNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTD 122 +NT + H + G++ ++ HKNT CK+G+C +IN KV G DTKT+ Sbjct: 57 INTEGSSALKHKK----KHHGLSANDVHKNTQCKEGKCTNINTKVGNG------ADTKTN 106 Query: 123 GTTQ 126 GT+Q Sbjct: 107 GTSQ 110 >UniRef50_B2VBT0 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VBT0_ERWT9 Length = 91 Score = 60.7 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 11/99 (11%) Query: 3 MTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNG 62 M K A + LTA ++L SGA +AA + NG ANAAADAG +AP A+ N+APN VDN+ Sbjct: 1 MKKFAIVLLTAAMTLGSGAVMAA-----SGNGSANAAADAGAIAPGAKSNLAPNRVDNSK 55 Query: 63 VNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCP 101 +NT S T H +D KNT CK+ +C Sbjct: 56 INTESSSTPHHKKKHHGASDAQ------KNTQCKEAKCT 88 >UniRef50_A7MIX9 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MIX9_ENTS8 Length = 167 Score = 58.0 bits (138), Expect = 8e-08, Method: Composition-based stats. Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 3/73 (4%) Query: 1 MKMTKLATLFLTATLSLASGAALAADSGAQTN---NGQANAAADAGQVAPDARENVAPNN 57 MK+ KL +LFLTATL+LASGAALAADSG+ T G ANAAA+AGQVAPDA++NVAPN Sbjct: 38 MKLNKLTSLFLTATLTLASGAALAADSGSSTGGSDTGSANAAANAGQVAPDAKQNVAPNG 97 Query: 58 VDNNGVNTGSGGT 70 VDNN +NT + Sbjct: 98 VDNNNINTSGTNS 110 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.118 0.304 Lambda K H 0.267 0.0351 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 397,868,859 Number of Sequences: 3077464 Number of extensions: 14543354 Number of successful extensions: 87441 Number of sequences better than 1.0e-01: 38 Number of HSP's better than 0.1 without gapping: 20 Number of HSP's successfully gapped in prelim test: 39 Number of HSP's that attempted gapping in prelim test: 87105 Number of HSP's gapped (non-prelim): 327 length of query: 126 length of database: 1,040,396,356 effective HSP length: 92 effective length of query: 34 effective length of database: 757,269,668 effective search space: 25747168712 effective search space used: 25747168712 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.1 bits) S2: 86 (38.0 bits)