Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	D	T	K	A	K	L	T	L	N	G	D	T	A	V	E	L	D	V	L	K	G	T	L	G	Q	D	V	I	D	I	R	T	L	G	S	K	G	V	F	T	F	D	P	G	F	T	S	T	A	S	C	E	S	K	I	T	F	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?								?												?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	G	D	E	G	I	L	L	H	R	G	F	P	I	D	Q	L	A	T	D	S	N	Y	L	E	V	C	Y	I	L	L	N	G	E	K	P	T	Q	E	Q	Y	D	E	F	K	T	T	V	T	R	H	T	M	I	H	E	Q	I	T	R
Secondary structure
SS confidence
Disorder																																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	F	H	A	F	R	R	D	S	H	P	M	A	V	M	C	G	I	T	G	A	L	A	A	F	Y	H	D	S	L	D	V	N	N	P	R	H	R	E	I	A	A	F	R	L	L	S	K	M	P	T	M	A	A	M	C	Y	K	Y	S
Secondary structure
SS confidence
Disorder												?																?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	G	Q	P	F	V	Y	P	R	N	D	L	S	Y	A	G	N	F	L	N	M	M	F	S	T	P	C	E	P	Y	E	V	N	P	I	L	E	R	A	M	D	R	I	L	I	L	H	A	D	H	E	Q	N	A	S	T	S	T	V	R
Secondary structure
SS confidence
Disorder		?	?	?																								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	A	G	S	S	G	A	N	P	F	A	C	I	A	A	G	I	A	S	L	W	G	P	A	H	G	G	A	N	E	A	A	L	K	M	L	E	E	I	S	S	V	K	H	I	P	E	F	V	R	R	A	K	D	K	N	D	S	F	R
Secondary structure
SS confidence
Disorder																					?	?		?																		?			?												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	M	G	F	G	H	R	V	Y	K	N	Y	D	P	R	A	T	V	M	R	E	T	C	H	E	V	L	K	E	L	G	T	K	D	D	L	L	E	V	A	M	E	L	E	N	I	A	L	N	D	P	Y	F	I	E	K	K	L	Y	P
Secondary structure
SS confidence
Disorder		?	?					?			?																					?																			?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		N	V	D	F	Y	S	G	I	I	L	K	A	M	G	I	P	S	S	M	F	T	V	I	F	A	M	A	R	T	V	G	W	I	A	H	W	S	E	M	H	S	D	G	M	K	I	A	R	P	R	Q	L	Y	T	G	Y	E	K	R	D
Secondary structure
SS confidence
Disorder																																											?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		F	K	S	D	I	K	R
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k3p chain A Region: 2 - 427 Aligned: 426 Modelled: 426 Confidence: 100.0% Identity: 100% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 2h12 chain C Region: 4 - 427 Aligned: 423 Modelled: 424 Confidence: 100.0% Identity: 65% PDB header:transferase Chain: C: PDB Molecule:citrate synthase; PDBTitle: structure of acetobacter aceti citrate synthase complexed2 with oxaloacetate and carboxymethyldethia coenzyme a (cmx) Phyre2 PDB 3msu chain A Region: 1 - 421 Aligned: 405 Modelled: 421 Confidence: 100.0% Identity: 52% PDB header:transferase Chain: A: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from francisella tularensis Phyre2 PDB 1csh chain A Region: 2 - 416 Aligned: 396 Modelled: 415 Confidence: 100.0% Identity: 26% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 2ibp chain B Region: 29 - 427 Aligned: 390 Modelled: 399 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: B: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum Phyre2 PDB 1csc chain A Region: 2 - 414 Aligned: 391 Modelled: 405 Confidence: 100.0% Identity: 25% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 2cts chain A Region: 2 - 414 Aligned: 394 Modelled: 413 Confidence: 100.0% Identity: 25% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 1iom chain A Region: 43 - 427 Aligned: 374 Modelled: 385 Confidence: 100.0% Identity: 33% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 1aj8 chain A Region: 43 - 427 Aligned: 370 Modelled: 385 Confidence: 100.0% Identity: 35% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 1vgm chain B Region: 43 - 427 Aligned: 374 Modelled: 382 Confidence: 100.0% Identity: 36% PDB header:transferase Chain: B: PDB Molecule:378aa long hypothetical citrate synthase; PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7 Phyre2 PDB 1vgp chain A Region: 41 - 427 Aligned: 372 Modelled: 387 Confidence: 100.0% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:373aa long hypothetical citrate synthase; PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7 Phyre2 PDB 2r26 chain C Region: 43 - 427 Aligned: 375 Modelled: 385 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: C: PDB Molecule:citrate synthase; PDBTitle: the structure of the ternary complex of carboxymethyl2 coenzyme a and oxalateacetate with citrate synthase from3 the thermophilic archaeonthermoplasma acidophilum Phyre2 PDB 3hwk chain E Region: 43 - 425 Aligned: 365 Modelled: 383 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: E: PDB Molecule:methylcitrate synthase; PDBTitle: crystal structure of methylcitrate synthase from2 mycobacterium tuberculosis Phyre2 PDB 1a59 chain A Region: 42 - 421 Aligned: 365 Modelled: 380 Confidence: 100.0% Identity: 32% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 1o7x chain A Region: 42 - 419 Aligned: 366 Modelled: 378 Confidence: 100.0% Identity: 33% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 2p2w chain A Region: 42 - 427 Aligned: 356 Modelled: 386 Confidence: 100.0% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from thermotoga maritima msb8 Phyre2 PDB 3tqg chain A Region: 52 - 427 Aligned: 358 Modelled: 376 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:2-methylcitrate synthase; PDBTitle: structure of the 2-methylcitrate synthase (prpc) from coxiella2 burnetii Phyre2 PDB 2c6x chain A Region: 43 - 420 Aligned: 360 Modelled: 378 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:citrate synthase 1; PDBTitle: structure of bacillus subtilis citrate synthase Phyre2 PDB 3o8j chain H Region: 54 - 427 Aligned: 359 Modelled: 374 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: H: PDB Molecule:2-methylcitrate synthase; PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium Phyre2 PDB 2xzm chain S Region: 69 - 90 Aligned: 22 Modelled: 22 Confidence: 49.8% Identity: 27% PDB header:ribosome Chain: S: PDB Molecule:rps15e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 1 d1k3pa_ 2 c2h12C_ 3 c3msuA_ 4 d1csha_ 5 c2ibpB_ 6 d1csca_ 7 d2ctsa_ 8 d1ioma_ 9 d1aj8a_ 10 c1vgmB_ 11 c1vgpA_ 12 c2r26C_ 13 c3hwkE_ 14 d1a59a_ 15 d1o7xa_ 16 c2p2wA_ 17 c3tqgA_ 18 c2c6xA_ 19 c3o8jH_ 20 c2xzmS_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1k3pa_ 100.0 100 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 2 c2h12C_ 100.0 65 PDB header:transferase Chain: C: PDB Molecule:citrate synthase; PDBTitle: structure of acetobacter aceti citrate synthase complexed2 with oxaloacetate and carboxymethyldethia coenzyme a (cmx) 3 c3msuA_ 100.0 52 PDB header:transferase Chain: A: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from francisella tularensis 4 d1csha_ 100.0 26 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 5 c2ibpB_ 100.0 38 PDB header:transferase Chain: B: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum 6 d1csca_ 100.0 25 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 7 d2ctsa_ 100.0 25 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 8 d1ioma_ 100.0 33 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 9 d1aj8a_ 100.0 35 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 10 c1vgmB_ 100.0 36 PDB header:transferase Chain: B: PDB Molecule:378aa long hypothetical citrate synthase; PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7 11 c1vgpA_ 100.0 35 PDB header:transferase Chain: A: PDB Molecule:373aa long hypothetical citrate synthase; PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7 12 c2r26C_ 100.0 30 PDB header:transferase Chain: C: PDB Molecule:citrate synthase; PDBTitle: the structure of the ternary complex of carboxymethyl2 coenzyme a and oxalateacetate with citrate synthase from3 the thermophilic archaeonthermoplasma acidophilum 13 c3hwkE_ 100.0 28 PDB header:transferase Chain: E: PDB Molecule:methylcitrate synthase; PDBTitle: crystal structure of methylcitrate synthase from2 mycobacterium tuberculosis 14 d1a59a_ 100.0 32 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 15 d1o7xa_ 100.0 33 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 16 c2p2wA_ 100.0 35 PDB header:transferase Chain: A: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from thermotoga maritima msb8 17 c3tqgA_ 100.0 29 PDB header:transferase Chain: A: PDB Molecule:2-methylcitrate synthase; PDBTitle: structure of the 2-methylcitrate synthase (prpc) from coxiella2 burnetii 18 c2c6xA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:citrate synthase 1; PDBTitle: structure of bacillus subtilis citrate synthase 19 c3o8jH_ 100.0 31 PDB header:transferase Chain: H: PDB Molecule:2-methylcitrate synthase; PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium 20 c2xzmS_ 49.8 27 PDB header:ribosome Chain: S: PDB Molecule:rps15e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 21 d1khda2 not modelled 38.9 23 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22 d1b8za_ not modelled 29.5 30 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 23 d1mula_ not modelled 25.7 15 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 24 d2o97b1 not modelled 21.6 30 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 25 c2l0cA_ not modelled 19.6 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative membrane protein; PDBTitle: solution nmr structure of protein sty4237 (residues 36-120) from2 salmonella enterica, northeast structural genomics consortium target3 slr115 26 d1p71a_ not modelled 19.2 30 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 27 d2elca2 not modelled 15.5 22 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 28 d1uoua2 not modelled 15.4 17 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 29 d1poib_ not modelled 15.2 9 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 30 d1huua_ not modelled 14.6 24 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 31 c3fcgB_ not modelled 14.5 12 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher 32 c2r9qD_ not modelled 14.3 28 PDB header:hydrolase Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase; PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens 33 d1owfa_ not modelled 14.0 35 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 34 d2prra1 not modelled 13.9 14 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 35 c3f10A_ not modelled 13.3 16 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 36 d1owfb_ not modelled 13.0 22 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 37 c3mesB_ not modelled 12.5 17 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 38 d3bzka5 not modelled 12.4 27 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 39 d1brwa2 not modelled 12.4 15 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 40 c3if8B_ not modelled 12.0 19 PDB header:cell cycle Chain: B: PDB Molecule:protein zwilch homolog; PDBTitle: crystal structure of zwilch, a member of the rzz kinetochore complex 41 d2fuka1 not modelled 11.8 9 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Atu1826-like 42 c2np2B_ not modelled 11.1 17 PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex 43 c3c4iA_ not modelled 10.5 35 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 44 c2xzmV_ not modelled 10.4 29 PDB header:ribosome Chain: V: PDB Molecule:rps17e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 45 c2ixsB_ not modelled 10.4 10 PDB header:hydrolase Chain: B: PDB Molecule:sdai restriction endonuclease; PDBTitle: structure of sdai restriction endonuclease 46 c3izbQ_ not modelled 10.3 21 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein rps17 (s17e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 47 d2oyoa1 not modelled 10.3 13 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 48 c3kgkA_ not modelled 10.2 15 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 49 c3cw1D_ not modelled 10.1 20 PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp 50 c3c5iD_ not modelled 10.0 11 PDB header:transferase Chain: D: PDB Molecule:choline kinase; PDBTitle: crystal structure of plasmodium knowlesi choline kinase, pkh_134520 51 c2nx9B_ not modelled 9.8 13 PDB header:lyase Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae 52 c3c65A_ not modelled 9.8 10 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 53 c3ajvD_ not modelled 9.7 21 PDB header:hydrolase Chain: D: PDB Molecule:trna-splicing endonuclease; PDBTitle: splicing endonuclease from aeropyrum pernix 54 c3ktbD_ not modelled 9.4 31 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 55 c2yzjB_ not modelled 8.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:167aa long hypothetical dutpase; PDBTitle: crystal structure of dctp deaminase from sulfolobus tokodaii 56 d2g9ha2 not modelled 8.8 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 57 d1es0a2 not modelled 8.7 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 58 c2iifA_ not modelled 8.5 27 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 59 d1uvqa2 not modelled 8.3 25 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 60 d2tpta2 not modelled 8.2 15 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 61 c1fctA_ not modelled 8.1 43 PDB header:transit peptide Chain: A: PDB Molecule:ferredoxin chloroplastic transit peptide PDBTitle: nmr structures of ferredoxin chloroplastic transit peptide2 from chlamydomonas reinhardtii promoted by3 trifluoroethanol in aqueous solution 62 d1fnga2 not modelled 8.0 38 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 63 c2rilA_ not modelled 8.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of a putative monooxygenase (yp_001095275.1) from2 shewanella loihica pv-4 at 1.26 a resolution 64 d1wg8a1 not modelled 7.7 19 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 65 d1iaka2 not modelled 7.6 25 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 66 d2p24a2 not modelled 7.6 25 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 67 c3t07D_ not modelled 7.4 31 PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid 68 d1r3sa_ not modelled 7.2 22 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 69 d2nx2a1 not modelled 7.1 16 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 70 c2okdB_ not modelled 7.1 19 PDB header:hydrolase Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: high resolution crystal structures of vaccinia virus dutpase 71 d3er7a1 not modelled 7.0 24 Fold:Cystatin-like Superfamily:NTF2-like Family:Exig0174-like 72 d1mtyb_ not modelled 7.0 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 73 d1kbla2 not modelled 6.8 33 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 74 d1pkha_ not modelled 6.8 25 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 75 c1v8gB_ not modelled 6.7 23 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 76 c2f4nA_ not modelled 6.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein mj1651; PDBTitle: crystal structure of protein mj1651 from methanococcus2 jannaschii dsm 2661, pfam duf62 77 c3dzoA_ not modelled 6.3 13 PDB header:transferase Chain: A: PDB Molecule:rhoptry kinase domain; PDBTitle: crystal structure of a rhoptry kinase from toxoplasma gondii 78 d1e6yb1 not modelled 6.2 17 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 79 d1klua2 not modelled 6.2 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 80 d1xs1a_ not modelled 6.2 26 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 81 c2kebA_ not modelled 6.1 12 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 82 c2qxxA_ not modelled 6.1 32 PDB header:hydrolase Chain: A: PDB Molecule:deoxycytidine triphosphate deaminase; PDBTitle: bifunctional dctp deaminase: dutpase from mycobacterium tuberculosis2 in complex with dttp 83 c3eeqB_ not modelled 5.9 35 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 84 c2rf4A_ not modelled 5.9 10 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 85 c2xsdC_ not modelled 5.8 12 PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna 86 d3eeqa2 not modelled 5.8 35 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 87 d1j93a_ not modelled 5.8 11 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 88 c3iz6Q_ not modelled 5.7 32 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s17 (s17e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 89 c3ieyA_ not modelled 5.7 36 PDB header:hydrolase/rna binding protein Chain: A: PDB Molecule:trna-splicing endonuclease; PDBTitle: crystal structure of the functional nanoarchaeum equitans trna2 splicing endonuclease 90 d2paga1 not modelled 5.7 18 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 91 c3k2gA_ not modelled 5.6 10 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 92 d1sq8a_ not modelled 5.6 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 93 c2bazA_ not modelled 5.6 11 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein bsu20020; PDBTitle: structure of yoss, a putative dutpase from bacillus subtilis 94 d1muja2 not modelled 5.5 38 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 95 d1vm7a_ not modelled 5.4 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 96 c2fugC_ not modelled 5.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 97 c2cv8A_ not modelled 5.4 21 PDB header:hydrolase Chain: A: PDB Molecule:trna-splicing endonuclease; PDBTitle: crystal structure of trna-intron endonuclease from2 sulfolobus tokodaii 98 c1rr2A_ not modelled 5.3 14 PDB header:transferase Chain: A: PDB Molecule:transcarboxylase 5s subunit; PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid 99 c2o0tB_ not modelled 5.3 36 PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0