BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (253 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 519 e-146 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 303 4e-81 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 144 2e-33 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 136 7e-31 UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salm... 128 1e-28 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 97 5e-19 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 97 5e-19 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 93 8e-18 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 93 9e-18 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 93 1e-17 UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enteric... 91 5e-17 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 90 6e-17 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 89 9e-17 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 89 2e-16 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 88 3e-16 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 86 1e-15 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 86 1e-15 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 82 1e-14 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 80 6e-14 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 80 7e-14 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 79 1e-13 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 75 3e-12 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 74 4e-12 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 74 4e-12 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 74 5e-12 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 74 5e-12 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 73 8e-12 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 73 1e-11 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 72 2e-11 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 72 2e-11 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 70 5e-11 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 70 6e-11 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 70 9e-11 UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=V... 69 1e-10 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 69 2e-10 UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF... 69 2e-10 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 69 2e-10 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 69 2e-10 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 68 3e-10 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 66 1e-09 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 65 2e-09 UniRef50_A9U895 Predicted protein (Fragment) n=1 Tax=Physcomitre... 65 2e-09 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 65 2e-09 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 65 2e-09 UniRef50_B7ALJ8 Sensor protein n=1 Tax=Bacteroides eggerthii DSM... 64 3e-09 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 64 4e-09 UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio... 64 5e-09 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 64 6e-09 UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_... 64 7e-09 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 63 8e-09 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 63 9e-09 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 63 9e-09 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 63 1e-08 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 63 1e-08 UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_... 63 1e-08 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 62 1e-08 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 62 1e-08 UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=C... 62 2e-08 UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=P... 62 2e-08 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 62 3e-08 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 62 3e-08 UniRef50_Q0VQ50 Transcriptional regulator, AraC family n=2 Tax=A... 61 3e-08 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 61 3e-08 UniRef50_B2Q5D0 Putative uncharacterized protein n=1 Tax=Provide... 61 3e-08 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 61 4e-08 UniRef50_C6D7J5 Two component transcriptional regulator, AraC fa... 61 4e-08 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 61 4e-08 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 61 4e-08 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 61 4e-08 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 61 4e-08 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 60 5e-08 UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=C... 60 5e-08 UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein ... 60 6e-08 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 60 6e-08 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 60 7e-08 UniRef50_C6D6I4 Two component transcriptional regulator, AraC fa... 60 7e-08 UniRef50_Q5LKF5 Transcriptional regulator, AraC family n=1 Tax=R... 60 8e-08 UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n... 60 8e-08 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 60 9e-08 UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=M... 60 9e-08 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 60 1e-07 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 59 1e-07 UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=B... 59 1e-07 UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=... 59 1e-07 UniRef50_Q5G2X8 Putative Arac-type regulatory protein (Fragment)... 59 1e-07 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 59 1e-07 UniRef50_B6XD52 Putative uncharacterized protein n=2 Tax=Provide... 59 1e-07 UniRef50_A4A3Z8 Transcriptional regulator (AraC family protein) ... 59 2e-07 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 59 2e-07 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 59 2e-07 UniRef50_A8MKS9 Two component transcriptional regulator, AraC fa... 59 2e-07 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 59 2e-07 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 59 2e-07 UniRef50_A9U7M3 Predicted protein n=1 Tax=Physcomitrella patens ... 58 3e-07 UniRef50_D2QI98 Two component transcriptional regulator, AraC fa... 58 3e-07 UniRef50_C0EGH4 Putative uncharacterized protein n=1 Tax=Clostri... 58 3e-07 UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=... 58 3e-07 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 58 3e-07 UniRef50_C6D226 Two component transcriptional regulator, AraC fa... 58 3e-07 UniRef50_B2I366 AraC-type DNA-binding domain-containing protein ... 58 3e-07 UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=P... 58 3e-07 UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family)... 58 3e-07 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 58 3e-07 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 58 3e-07 UniRef50_B8KT68 Transcriptional regulator, AraC family n=1 Tax=g... 58 4e-07 UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=S... 58 4e-07 UniRef50_B2ICW5 Transcriptional regulator, AraC family n=1 Tax=B... 58 4e-07 UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Ta... 57 4e-07 UniRef50_C7CT88 Predicted protein n=22 Tax=Enterococcus faecalis... 57 4e-07 UniRef50_Q169B6 Transcriptional regulator, AraC family, putative... 57 4e-07 UniRef50_B9BAR1 Transcriptional regulator, AraC family n=1 Tax=B... 57 5e-07 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 57 5e-07 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 57 5e-07 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 57 6e-07 UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type... 57 6e-07 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 57 6e-07 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 57 6e-07 UniRef50_A3J4H6 Two-component system sensor histidine kinase/res... 57 6e-07 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 57 7e-07 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 57 7e-07 UniRef50_B8KKT6 Transcriptional regulator, AraC family n=2 Tax=u... 57 7e-07 UniRef50_A8EX63 Transcriptional regulator, AraC family n=1 Tax=A... 57 7e-07 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 57 7e-07 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 57 7e-07 UniRef50_C5ET72 Predicted protein n=1 Tax=Clostridiales bacteriu... 57 7e-07 UniRef50_B4SQ42 Transcriptional regulator, AraC family n=5 Tax=X... 57 7e-07 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 57 7e-07 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 57 7e-07 UniRef50_B7S1T1 Transcriptional regulator, AraC family n=1 Tax=m... 57 7e-07 UniRef50_B5JY44 Transcriptional regulator, AraC family, putative... 57 7e-07 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 57 8e-07 UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID... 57 8e-07 UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photob... 57 8e-07 UniRef50_B0TKW3 Transcriptional regulator, AraC family n=3 Tax=S... 56 9e-07 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 56 1e-06 UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefa... 56 1e-06 UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=G... 56 1e-06 UniRef50_A3YC06 Transcriptional regulator, AraC family protein n... 56 1e-06 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 56 1e-06 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 56 1e-06 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 56 1e-06 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 56 1e-06 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 56 1e-06 UniRef50_C1SI41 DNA-binding domain-containing protein, AraC-type... 56 1e-06 UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=B... 56 1e-06 UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_... 56 1e-06 UniRef50_A1TJQ7 Transcriptional regulator, AraC family n=2 Tax=A... 56 1e-06 UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseud... 56 1e-06 UniRef50_A7M014 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8... 55 2e-06 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 55 2e-06 UniRef50_B3CG99 Sensor protein n=4 Tax=Bacteroides RepID=B3CG99_... 55 2e-06 UniRef50_B2TEU0 Transcriptional regulator, AraC family n=3 Tax=B... 55 2e-06 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 55 2e-06 UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative... 55 2e-06 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 55 2e-06 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 55 2e-06 UniRef50_A3QFM4 Transcriptional regulator, AraC family n=1 Tax=S... 55 2e-06 UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Morit... 55 2e-06 UniRef50_UPI0001C35655 two-component response regulator n=1 Tax=... 55 2e-06 UniRef50_Q1YPA3 Transcriptional regulator, AraC family protein n... 55 2e-06 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 55 3e-06 UniRef50_Q2G532 Transcriptional regulator, AraC family n=1 Tax=N... 55 3e-06 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 55 3e-06 UniRef50_Q1YPI7 Transcriptional regulator, AraC family protein n... 55 3e-06 UniRef50_A3K7U5 Putative uncharacterized protein n=1 Tax=Sagittu... 55 3e-06 UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Pae... 55 3e-06 UniRef50_A6LW09 Response regulator receiver protein n=2 Tax=Clos... 55 3e-06 UniRef50_Q82WF8 AraC type helix-turn-helix n=1 Tax=Nitrosomonas ... 55 3e-06 UniRef50_A9G936 Transcriptional regulator, AraC family n=1 Tax=S... 55 3e-06 UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein ... 55 3e-06 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 55 3e-06 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 55 3e-06 UniRef50_P68913 Uncharacterized HTH-type transcriptional regulat... 54 3e-06 UniRef50_B1XIJ2 Two-component response regulator n=2 Tax=Synecho... 54 3e-06 UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=A... 54 3e-06 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 54 3e-06 UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=V... 54 4e-06 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 54 4e-06 UniRef50_C0ZD41 Probable transcriptional regulator n=1 Tax=Brevi... 54 4e-06 UniRef50_Q1N1T2 AraC-type DNA-binding domain-containing protein ... 54 4e-06 UniRef50_A9GXS9 Ornithine utilization regulator n=1 Tax=Sorangiu... 54 4e-06 UniRef50_B3C9G8 Sensor protein n=2 Tax=Bacteroides RepID=B3C9G8_... 54 4e-06 UniRef50_C6CUY4 Two component transcriptional regulator, AraC fa... 54 4e-06 UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=B... 54 4e-06 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 54 4e-06 UniRef50_B9L6G8 Transcriptional regulator n=1 Tax=Nautilia profu... 54 4e-06 UniRef50_UPI000197BA84 hypothetical protein BACCOPRO_03194 n=1 T... 54 4e-06 UniRef50_Q5ZTY8 Transcriptional regulator OruR, AraC family n=4 ... 54 4e-06 UniRef50_D1N6W7 Transcriptional regulator, AraC family n=1 Tax=V... 54 4e-06 UniRef50_A7VPJ4 Putative uncharacterized protein n=1 Tax=Clostri... 54 4e-06 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 54 4e-06 UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=V... 54 4e-06 UniRef50_Q2B9I5 Putative uncharacterized protein n=1 Tax=Bacillu... 54 4e-06 UniRef50_C6LB63 Putative response regulator receiver domain prot... 54 4e-06 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 54 5e-06 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 54 5e-06 UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2... 54 5e-06 UniRef50_C6CWQ4 Two component transcriptional regulator, AraC fa... 54 5e-06 UniRef50_A3UQ73 Helix-turn-helix, Fis-type protein n=3 Tax=Vibri... 54 5e-06 UniRef50_A6DLX0 Transcriptional regulator n=1 Tax=Lentisphaera a... 54 5e-06 UniRef50_A9BZN3 Transcriptional regulator, AraC family n=1 Tax=D... 54 6e-06 UniRef50_A4CH85 Serine/threonine kinase n=3 Tax=Bacteroidetes Re... 54 6e-06 UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=D... 54 6e-06 UniRef50_A4XNX6 Transcriptional regulator, AraC family n=1 Tax=P... 54 6e-06 UniRef50_D1CHN4 Transcriptional regulator, AraC family n=1 Tax=T... 54 6e-06 UniRef50_UPI000178A004 two component transcriptional regulator, ... 54 6e-06 UniRef50_Q4KDB9 Transcriptional regulator, AraC family n=1 Tax=P... 54 6e-06 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 54 7e-06 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 54 7e-06 UniRef50_B0NYF7 Putative uncharacterized protein n=1 Tax=Clostri... 53 7e-06 UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firm... 53 8e-06 UniRef50_Q1QJK3 Transcriptional regulator, AraC family n=1 Tax=N... 53 8e-06 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 53 8e-06 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 53 8e-06 UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=... 53 8e-06 UniRef50_C0BZ09 Putative uncharacterized protein n=1 Tax=Clostri... 53 8e-06 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 53 8e-06 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 53 8e-06 UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitre... 53 8e-06 UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostri... 53 8e-06 UniRef50_Q4BYL1 Helix-turn-helix, Fis-type n=1 Tax=Crocosphaera ... 53 9e-06 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 53 9e-06 UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=C... 53 9e-06 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 53 9e-06 UniRef50_C6D1I5 Transcriptional regulator, AraC family n=1 Tax=P... 53 9e-06 UniRef50_D0S8B4 HTH-type transcriptional regulator n=1 Tax=Acine... 53 9e-06 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 53 9e-06 UniRef50_C6VNG3 Response regulator n=3 Tax=Lactobacillus plantar... 53 1e-05 UniRef50_C4G3Y7 Putative uncharacterized protein n=1 Tax=Abiotro... 53 1e-05 UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1... 53 1e-05 UniRef50_D1PFT7 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 53 1e-05 UniRef50_UPI0001BC85BF ATP-binding region ATPase domain protein ... 53 1e-05 UniRef50_Q16E45 Transcriptional regulator, AraC family, putative... 53 1e-05 UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 T... 53 1e-05 UniRef50_C1A7J5 AraC family transcriptional regulator n=1 Tax=Ge... 53 1e-05 UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casselifl... 53 1e-05 UniRef50_B9XJ53 Transcriptional regulator, AraC family n=1 Tax=b... 53 1e-05 UniRef50_C7H1K1 DNA-binding response regulator n=1 Tax=Faecaliba... 53 1e-05 UniRef50_C6D094 Transcriptional regulator, AraC family n=1 Tax=P... 53 1e-05 UniRef50_C4FYZ2 Putative uncharacterized protein n=1 Tax=Abiotro... 53 1e-05 UniRef50_UPI0001C36E10 transcriptional regulator, AraC family pr... 53 1e-05 UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. ora... 53 1e-05 UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=D... 53 1e-05 UniRef50_UPI0001788C2F two component transcriptional regulator, ... 53 1e-05 UniRef50_D2QBS1 Response regulator receiver sensor hybrid histid... 53 1e-05 UniRef50_Q3KCK3 Putative transcriptional Regulator, AraC family ... 52 1e-05 UniRef50_C5ERJ4 Two component transcriptional regulator n=1 Tax=... 52 1e-05 UniRef50_C6VYN6 Transcriptional regulator, AraC family n=1 Tax=D... 52 1e-05 UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=m... 52 1e-05 UniRef50_A6EFE7 Transcriptional regulator, AraC family protein n... 52 1e-05 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR Sbjct: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA Sbjct: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK Sbjct: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP Sbjct: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Query: 241 LNYLAKQRQKVMW 253 LNYLAKQRQKVMW Sbjct: 241 LNYLAKQRQKVMW 253 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 303 bits (776), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 143/252 (56%), Positives = 192/252 (76%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 M++ S +PC+V+LTEK+V + VN +L N++A C NN+I++S+LN+ L+ HI+ Sbjct: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 +II DYL FLNK+L+ + W R ATP++ TP+VFR+AA HS E E TRA Sbjct: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LLFTVLS FL+ +F++L+MY+LR+ V DSV +II+SDI WNL +VAS LCLSPSLLK Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KKLK+ENTSYSQI+T CRMRYAV L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 241 LNYLAKQRQKVM 252 L+Y+++ R++ + Sbjct: 241 LHYVSQHRERTV 252 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/194 (39%), Positives = 124/194 (63%) Query: 58 INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAEL 117 ++R+ ++ +L L + + ++ + ++ +R VF+ A S+ + R E Sbjct: 54 VSRDTLSLFLPMLKEEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLR 113 Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 RAL+F +LS FLE ++FI LL+ +L+ ++R VC +I ++I H W L +AS L +SPS Sbjct: 114 KRALIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS 173 Query: 178 LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 LLKKKL+ E TSYSQ++TECRM+ A+Q++++ +I +VA CGY S SYFI VF+ +YG Sbjct: 174 LLKKKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYG 233 Query: 238 LTPLNYLAKQRQKV 251 +TP Y + Q++ Sbjct: 234 MTPTEYQERSAQEL 247 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 100/153 (65%) Query: 97 VFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQ 156 +F+ AAN S + E R+L+ ++S FL+ FI LLM IL + VC +I Sbjct: 109 IFKYAANLSHKSDLSCAEKLRKRSLMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVIN 168 Query: 157 SDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQV 216 S+I + W+L ++AS L +SPSLLKKKL+ E T+YSQ++TECRM+ A+++L D+ + + Sbjct: 169 SNIANDWSLTLIASELLMSPSLLKKKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKT 228 Query: 217 AQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A LCGY S SYFI+VF+ +G+TP Y K++ Sbjct: 229 AILCGYKSVSYFIAVFRKHFGITPTEYQDKRQH 261 >UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salmonella enterica subsp. enterica serovar Agona str. SL483 RepID=B5F2H2_SALA4 Length = 146 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 93/136 (68%) Query: 11 VILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFL 70 ++LTEK+ + VN +L NY+A AC NNVI++S+LN VL+ ++RN I DYL FL Sbjct: 1 MLLTEKDTWLRVNGKEPISLKANYMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFL 60 Query: 71 NKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFL 130 NK+L+ + W R A P++ + TP++FR+AA +S + +E TRALLFTVLS FL Sbjct: 61 NKDLSHLPVWQRNADPLLTANCLTPDIFRVAARYSAMETPDEIVSERTRALLFTVLSRFL 120 Query: 131 EQSRFIALLMYILRSS 146 + +FI+LLM++LR+ Sbjct: 121 DHKKFISLLMHMLRTD 136 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 31/212 (14%) Query: 61 NIINDYLLFLNKNLTCVKP----WSRLATPVIAC-------HSRTPEVF-------RLAA 102 NII D L+ +++ L P W R + + C H R P + RL Sbjct: 24 NIIKDSLILMDEKLAFRIPHNCSWVR-SLEIDECIVSNYLQHIRHPAQYSGKHTRHRLLI 82 Query: 103 NHSKQQP-----------SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 NH P + L+ L F+ LS F + LL + +++ V Sbjct: 83 NHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLFSMHDELVPLLFNSI-NTLSGKV 141 Query: 152 CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNK 211 RII D W LR VA L S SL+KKKL++ENTS+S+I+ RM A +L ++ Sbjct: 142 ERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSFSKILLASRMARAKTLLELNQM 201 Query: 212 NITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +T +A+ CGYSSTSYFI+ F+ +YG+TP Y Sbjct: 202 PLTVIAEKCGYSSTSYFINTFRQYYGVTPHQY 233 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 7/199 (3%) Query: 50 LNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATP--VIACHSRTPEVFRLAANHSKQ 107 LN+ LI + +I N Y FL ++ P ++ T + + VF L + +K Sbjct: 86 LNYNLIELDSASIKNAYNFFLYEHADFSDPLTKPTTKHLLAPIETGVARVFNLLHSSNKS 145 Query: 108 QP-SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLR 166 Q S+ + L R LL S F+ + AL + ++++ +++ II SDI W L+ Sbjct: 146 QKLSQDKKEYLIRFLL----SEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALK 201 Query: 167 IVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 ++ SL +S S LK+KLK E+TS+S++ RM A ++L NIT+VA +CGY S S Sbjct: 202 DISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSAS 261 Query: 227 YFISVFKAFYGLTPLNYLA 245 YF VFK + TP +LA Sbjct: 262 YFTCVFKKHFKTTPSEFLA 280 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/127 (44%), Positives = 73/127 (57%), Gaps = 1/127 (0%) Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 L+ LS F R + L L SS+ V IIQ+DI W L +A L +S SLLK Sbjct: 108 LMMACLSLFESDERILLFLSGCL-SSISAKVRAIIQTDISASWTLGAIALRLHMSESLLK 166 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KLKNE +S+++ E RMR AV ML + VA+ CGYSS SYFISVF +YG P Sbjct: 167 IKLKNEGHMFSRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPP 226 Query: 241 LNYLAKQ 247 Y+++Q Sbjct: 227 DRYVSRQ 233 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 44/218 (20%) Query: 48 STLNHVLITHINRNIINDYLLFLNKNLTCVKPWS----------------RLATPVIAC- 90 S +H++I + +ND+ KN T + P+S L ++AC Sbjct: 43 SNTDHLMIVDVEEKTVNDFF----KNYT-LSPFSVRRFYPSYLIVECEDFSLLKNLVACL 97 Query: 91 --HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 S+T +V R Q S C A L+ ++ +FL S +S+ Sbjct: 98 NCDSKTVDVVR-------NQISLACLAVLSSE---KIVQSFLFGSL----------NSLG 137 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 V II SDI W L ++S L +S SLLK+KLK+E S+S+++ E RM A ++L+ Sbjct: 138 CKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSFSKLILEERMMMAQRLLIY 197 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 N + +VA +CGY + SYF+SVF+ ++G+ P YL++ Sbjct: 198 SNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSR 235 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 68/96 (70%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 + II +I+ W+L+ +A + S SL+KK+L++E TS+++I+ + RMRYA +++ ++ Sbjct: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNS 200 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +I VAQ CGY+STSYFI FK +YG+TP +Y K Sbjct: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 >UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enterica RepID=Q04819_SALTY Length = 259 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 11/138 (7%) Query: 95 PEVFRLAAN----HSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 P + RL A + + P P L F ++S F EQ F L L+ S+ D Sbjct: 94 PLMVRLCAGTDNSYGETGPENP-------FLTFALVSAFCEQDIFFPFLKTCLKQSMADQ 146 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 V +I ++ W + VA L +S SLLKKKLK ENTSY++I+ ECRM+ A ++++M Sbjct: 147 VATVINRNVSENWTIHRVAGELYVSVSLLKKKLKEENTSYTRILLECRMKKASELIVMQE 206 Query: 211 KNITQVAQLCGYSSTSYF 228 + +VA CGYSS F Sbjct: 207 GAVKKVAYQCGYSSVPVF 224 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 1/127 (0%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 L+ L + LS F + I LL + S+V V R+I DI W LR +A + S Sbjct: 108 LSNMLYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSE 166 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 SL+KKKL++ENT +S+I+ RM A ++L + + +A+ CGYSSTSYFI+ F+ +Y Sbjct: 167 SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 Query: 237 GLTPLNY 243 G+TP + Sbjct: 227 GVTPHQF 233 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 1/127 (0%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 ++ FT LS F + +F L L+S+ V II +D+ W L+ ++S L LS Sbjct: 110 FDESIAFTCLSAFSSEKQFGVFLFECLKST-EAKVKTIIHTDLSAPWRLKDISSRLYLSE 168 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 SLLK+KLK E S+S+I+ + RM+ A +L I++VA++CGY+S SYF VF+ ++ Sbjct: 169 SLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYF 228 Query: 237 GLTPLNY 243 G++P Y Sbjct: 229 GVSPSQY 235 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 74/123 (60%) Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 L ++S F+ + L ++ + ++ V II SD+ W+ VA L +S S LK+ Sbjct: 168 LMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKR 227 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 KL E S+S+I + RM A+++L M NI+QVA +CGY + SYFI++FK + +TPL Sbjct: 228 KLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL 287 Query: 242 NYL 244 +++ Sbjct: 288 SFM 290 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 8/132 (6%) Query: 116 ELTRALLFTVLSNFLEQSRFIALL---MYILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 + A+ F++LS F + + A L M VR I SD+ +W LR +A L Sbjct: 112 DFKDAIFFSLLSVFSDVANLRAFLTSGMPTFSGKVRS----IFLSDVSKHWKLRDLADYL 167 Query: 173 CLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVF 232 +S SL+KKKL ENTS+S+I+ + RM A++ LL N I V+++CG+SSTSYF+ +F Sbjct: 168 YMSESLIKKKLLLENTSFSKILLDTRMSLAIK-LLKQNHPIKYVSEMCGFSSTSYFVCLF 226 Query: 233 KAFYGLTPLNYL 244 + +Y TP YL Sbjct: 227 RQYYECTPRKYL 238 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 2/124 (1%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 + LLF+ LS F FI LL + S V V I+ + H W L+ + L +S Sbjct: 106 FSELLLFSCLSIFAACKGFITLLTNGVLS-VSGKVRNIVNMKLAHPWKLKDICDCLYISE 164 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 SLLKKKLK E T++SQI+ + RM++A ++ ++ ++ ++A+ CGY+STSYFI F+ + Sbjct: 165 SLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHF 223 Query: 237 GLTP 240 G +P Sbjct: 224 GNSP 227 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 74/119 (62%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 +LS F + + + +++ S+ D V ++I+ DI W L V+SS+ +S S L+K+L Sbjct: 144 LLSFFNDYNDIVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLN 203 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 EN ++ +I+ + +M++A L +KNI +++ L G++STSYFI VFK +Y TP Y Sbjct: 204 KENLTFKKIMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKY 262 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 116 ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS 175 + + + F LS F F+ LL + +SV V II S W ++ +++SL +S Sbjct: 105 QFSEQMFFACLSIFSTHRGFMFLLFRCI-NSVALKVRYIICSSPSRAWRVKDISNSLYMS 163 Query: 176 PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 SLLK+KL+ E S+SQI+ + RM A Q L+ ++ Q+A CGY+ST YFISVF+ + Sbjct: 164 ESLLKRKLQEEKVSFSQILLDIRMHNARQ-LISSKLSVNQIAIRCGYASTPYFISVFREY 222 Query: 236 YGLTPLNYLAKQ 247 +G+TP + Q Sbjct: 223 FGITPHQMMINQ 234 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 1/127 (0%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 T ALL +LS F+ + F ++ + SV+ V ++ ++ W L V+S++ +S S Sbjct: 168 TYALLL-LLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTEPDKQWKLDDVSSAIFMSAS 226 Query: 178 LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 LK+KL E T++S++ RM A ++L ++T VA LCGY S SYFI+ FK + Sbjct: 227 TLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYFIACFKRQFN 286 Query: 238 LTPLNYL 244 +TP ++ Sbjct: 287 ITPSAFM 293 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 81/131 (61%), Gaps = 3/131 (2%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 A LF+ ++N +EQ + +L + + RS D V + I +DI W L+ ++ L LS + Sbjct: 132 ACLFSKVNN-IEQ-LYTSLCISVSRS-FSDIVRKTIDNDISTKWRLKTLSEKLNLSEVTI 188 Query: 180 KKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 +KKL+NENT++ +I+ + RM+ A +++L + +I +V+ G SS SYFI +F +YGLT Sbjct: 189 RKKLENENTNFYRILLDARMQKAARLVLDSDTHINKVSYAVGMSSVSYFIKLFSDYYGLT 248 Query: 240 PLNYLAKQRQK 250 P + K + + Sbjct: 249 PKQFHLKYKHR 259 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 56/99 (56%) Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQM 205 ++++ V II S W L VA + +S S LK+KL E TS+S I RM A ++ Sbjct: 206 TLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKL 265 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 L + N N+ VA CGY STSYFI FK ++ TP ++ Sbjct: 266 LRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFI 304 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 60/96 (62%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 D V +I+ D+ W L I+A +S ++K+L++E+T+++QI+ + RM A +LL Sbjct: 108 DKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLE 167 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++ I+Q++ + G SS SYFI +F +G+TP + Sbjct: 168 NSYQISQISNMIGISSASYFIRIFNKHFGVTPKQFF 203 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 63/97 (64%) Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNI 213 II++D+ W L +A+ L +S ++KKL+ E+ +++ +V + RM +A +++ +K+I Sbjct: 179 IIEADLSRSWRLVDLANILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAKLITTSDKHI 238 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +A GY+STSYFI FK F+G+TP + K +++ Sbjct: 239 NSIANEVGYTSTSYFIRNFKEFFGITPKQFSLKVKKQ 275 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 69/133 (51%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 + ++L F +++ + E + L + ++ +I + Q W+L VA +L +P Sbjct: 139 MKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTP 198 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 S L++ L E S+ Q++ + RM A+ L N ++ Q++ CG+ S +YF VFK Y Sbjct: 199 STLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKY 258 Query: 237 GLTPLNYLAKQRQ 249 +TP + + RQ Sbjct: 259 NMTPSQFRLQSRQ 271 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 V +I+S+I W LR+++ +S ++KKL+ E + +++ E RM+ A+ +L+ Sbjct: 192 VIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELILEIRMKKAMTLLIAGE 251 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 +++++A GY++ SYFIS F+ F+G+TP Sbjct: 252 LSVSKIADKVGYNNISYFISHFRQFFGMTP 281 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%) Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQM 205 S D + +I++ +I+ W L ++++L LS ++K+L++E ++ QI+ + RM +A ++ Sbjct: 158 SFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKL 217 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 LL I V++L G SS SYFI F +YG+TP + Sbjct: 218 LLNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKF 255 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 57/82 (69%), Gaps = 1/82 (1%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNK-NITQVAQLCG 221 W+L ++A L +S S LK+KLK+E+ +++++ RM +A ++LL + I VA++CG Sbjct: 181 WSLSMMAKELYMSESTLKRKLKSEDQTFTELYNFARMSHAKKLLLSNRDIKIATVAEMCG 240 Query: 222 YSSTSYFISVFKAFYGLTPLNY 243 ++ SYF+S FK ++GL+PL Y Sbjct: 241 FNHVSYFVSCFKKYFGLSPLVY 262 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 56/100 (56%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMD 209 ++ R+I D Q W++ +A +L + S L++ L E S+SQ++ + RM A+ L Sbjct: 201 TIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFS 260 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 N +I+Q+ G+ S +YF FK YG+TP + A R+ Sbjct: 261 NYSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE 300 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 61/96 (63%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 D V +I+ D+ W L I+A +S ++K+L++E+T+++QI+ + RM A +LL Sbjct: 166 DKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLE 225 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++ I+Q++ + G SS SYFI +F +G+T ++L Sbjct: 226 NSYQISQISNMIGISSASYFIRIFNKHFGVTRSSFL 261 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 57/101 (56%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMD 209 ++ R+I D Q W++ +A +L + S L++ L E S+SQ++ + RM A+ L Sbjct: 171 TIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFS 230 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 N +I+Q++ G+ S +YF FK YG+TP + RQ+ Sbjct: 231 NYSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTSRQE 271 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A +L +SP L+++LK ENTSY ++V + RM+ A Q+L + + T+V CG+S S Sbjct: 254 IAQALHMSPRTLQRRLKAENTSYGEVVQQTRMQLAQQLLASPDISATEVGLACGFSDASA 313 Query: 228 FISVFKAFYGLTPLNY 243 F FK + G TP +Y Sbjct: 314 FTRAFKRWTGTTPSDY 329 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 L +FL Q I + R + DSV I++ D+ H W L+ VA SL +S +++KL++ Sbjct: 203 LDDFLLQKSKI-----VQRECLSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQD 257 Query: 186 ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 E ++ +++ R+R A LL ++T++ L G+S S+F FK + G P Y Sbjct: 258 EGQTFRKLLNNARIRTAESYLLNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQY 315 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 1/105 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQ 204 SS+ + +I D+ W L+ +A + +S S +K+KL E T+++ ++ R+ A + Sbjct: 131 SSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQK 190 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 M+ + +++ +A+LCG+ SYF + F+ YG TPL Y KQ Q Sbjct: 191 MVCNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAY-RKQAQ 234 >UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5DYJ4_VIBF1 Length = 269 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 60/106 (56%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 + SV+ + +++ +H W L V+ L +PS L++ LK EN S+S+++ + R+ + Sbjct: 158 KRSVKSLISELVKKSPEHSWTLITVSKELNTTPSTLRRHLKKENISFSKLLLKIRLGLGL 217 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 L N +I +V+ L G++S++YF VFK Y +TP + R Sbjct: 218 NYLTFSNHSILKVSYLSGFNSSAYFCDVFKKEYHMTPSEFRINSRN 263 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 56/95 (58%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 + + ++ SD+ W L +A + +S ++K+L+ E +++Q++ + RM A + ++ Sbjct: 154 ERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILDVRMNQAAKFIIR 213 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + I +A L GY+S SYFI FK +YG+TP + Sbjct: 214 SDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKKF 248 >UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ1_PROMI Length = 263 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 35/198 (17%) Query: 62 IINDYLLFLNKN--LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPC------ 113 I ND ++F+ KN L + +++ + H EV ++ N+ K++ ++ Sbjct: 41 IDNDSIVFIKKNSALDIILGKNKMPEFIFLSHEVMMEVLKITINNKKEEVTQDNNKDSFI 100 Query: 114 -EAELTRALLFTVLSN------------FLEQSRFIALLMY-------ILRS-----SVR 148 +A L F L N L Q IA L+ IL+S SV+ Sbjct: 101 KQANHEDILFFNRLKNKFNDEVITNNKTSLSQILKIAYLLLNFDIPNLILKSKPELTSVK 160 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 V II SD+QH W+L+ ++S L +S S L+KKL+ E T++ ++T RM +A+ +L Sbjct: 161 --VKDIIISDLQHSWSLKEISSKLFISESSLRKKLEAEKTNFMTLLTTVRMAHAMNLLAT 218 Query: 209 DNKNITQVAQLCGYSSTS 226 N I Q++ L GY +TS Sbjct: 219 TNLTIGQISSLSGYKNTS 236 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 56/86 (65%) Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNIT 214 I+++ W L ++A +S ++K+L++E TS+S + + RM ++Q+LL + I Sbjct: 177 IENNPSKRWCLNMIADEFNISEISVRKRLESEGTSFSNLFLKVRMEKSMQLLLQNELQIC 236 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTP 240 Q+++ G+ STSYFI +FK ++G+TP Sbjct: 237 QISKSVGFRSTSYFIKIFKDYFGITP 262 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 6/112 (5%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQ 204 S+ + + R+I IQH W ++ +L +S + L +++ E T+ S ++ RM A Sbjct: 132 DSISERIHRLISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAY 191 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP------LNYLAKQRQK 250 +LL I +VA L G+SS SYF FK YG +P ++Y K+ Q+ Sbjct: 192 LLLKKKHPIKKVAHLTGFSSASYFCKKFKETYGNSPKQFVNLMDYKQKETQR 243 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 8/112 (7%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRI-----VASSLCLSPSLLKKKLKNENTSYSQIVTE 196 ++R +VR+ V +++ IQ W R+ VA L +SP LK++L+ TSY QI Sbjct: 238 LVRLNVRNDVAGMVRLQIQD-WEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDS 296 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 R R A+ L + ++ +A+L GYS S F FK++ +TP + +QR Sbjct: 297 SRFRRAIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEF--RQR 346 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 46/83 (55%) Query: 158 DIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVA 217 D W++ A L L S L+++L E+ + I+ E RM A+Q + ++I Q+A Sbjct: 177 DPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIA 236 Query: 218 QLCGYSSTSYFISVFKAFYGLTP 240 + GY+S S F + F+ YGLTP Sbjct: 237 EASGYASASRFAARFRQRYGLTP 259 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%) Query: 165 LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 L VA +S + L +KLK E T Y +++ E R+ +A+ ++ + N+ +AQLCGY S Sbjct: 175 LEFVAERFAMSRATLIRKLKQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQS 234 Query: 225 TSYFISVFKAFYGLTPLNYL 244 F FK +GLTP Y+ Sbjct: 235 EGRFSQRFKGKFGLTPSEYI 254 >UniRef50_A9U895 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U895_PHYPA Length = 306 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 112 PCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ-------HYWN 164 P +L R L +L +S F ALL + R S R + IQ Y N Sbjct: 54 PPRRDLGRIGSMDELEEWL-RSYFTALLNLLKRQRAGGSYSRHVSQAIQFILERYQGYIN 112 Query: 165 LRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L +VA+S+ L+PS L + K E ++S+ V R+ A ++L D ++ Q++ G++ Sbjct: 113 LEMVAASIGLNPSYLSRLFKEETQCNFSEYVNRIRIDAAQKLLESDQYSVKQISSQVGFT 172 Query: 224 STSYFISVFKAFYGLTPLNY---LAKQRQK 250 + +YF VFK G+TP Y L +RQ+ Sbjct: 173 TYNYFFKVFKELTGMTPHAYVESLRPERQR 202 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 W++ VA L L S L+++L+ E+ S+ QIV E RM +A+ L ++ I ++AQ GY Sbjct: 181 WSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGY 240 Query: 223 SSTSYFISVFKAFYGLTP 240 S S F + F+ YGL P Sbjct: 241 QSGSRFTARFRQHYGLLP 258 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Query: 145 SSVRDS--VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202 SS+ DS + I+++I+ L +A+ + +S + LK++L E+ S+SQI+ R+ +A Sbjct: 160 SSLSDSQKAIKYIENNIEKDITLEGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFA 219 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 L M K+IT++A G+ S ++F + FK+ Y +TP ++ Sbjct: 220 ATQLRMSEKSITEIAFESGFKSAAHFSTAFKSVYNMTPKDF 260 >UniRef50_B7ALJ8 Sensor protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7ALJ8_9BACE Length = 1239 Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 169 ASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 AS+L LS SLL KK+K N S + + R+ YA++ L N+T+V+++CG+S+ +Y Sbjct: 1163 ASALALSQSLLYKKIKALTNLSVVEFIRSIRLNYAMEKLRSGEYNVTEVSEMCGFSTPAY 1222 Query: 228 FISVFKAFYGLTP 240 F VFK ++G TP Sbjct: 1223 FSKVFKEYFGKTP 1235 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 3/115 (2%) Query: 138 LLMYILRSSVRDSVCRIIQ---SDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIV 194 LL I+R++ +IIQ S+I+ +L +A + +S + LK++L E S+SQ++ Sbjct: 157 LLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMSTATLKRRLAAEEMSFSQLL 216 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 R+ +A L + +K+IT +A G+ S ++F + FKA +TP + AK +Q Sbjct: 217 KIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTPKEFRAKVQQ 271 >UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J4_VIBPA Length = 241 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 + R++ D++ W+L V S S L +KLK+ TS QI++ R+ YA ++ + Sbjct: 135 IYRLVSKDLKKKWSLEEVCKLTYTSKSTLNRKLKDNQTSMGQIISNARLDYATILITNTS 194 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++ +++ L G++STSYF FK +G +P Y Sbjct: 195 LSVDEISMLSGFNSTSYFCKKFKESHGFSPKQY 227 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 134 RFIALLMYILRSSVRDSVCR----IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTS 189 +++A Y+ RS+ R + R +I ++ W+ + +A SL LS + L++KL E + Sbjct: 154 QWLANAGYVFRSNERADIQRKVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNA 213 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 +S+I+ + RM A+ +L + I +A GY S S F FK +G +P Sbjct: 214 FSEILVDVRMSLALSLLQSTDAAIASIAYQVGYESASRFSVRFKQRFGFSP 264 >UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_BACV8 Length = 1340 Score = 63.5 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 79/147 (53%), Gaps = 19/147 (12%) Query: 121 LLFTVLSNFLEQSRFIALLMYI----------------LRSSVRDSVCRIIQSDIQ-HYW 163 LL + ++N LE + IA L+ + L + + +II+ +++ Sbjct: 1195 LLHSRINNLLETRKKIASLLALADIQPKQESAVSSLNKLDNEFLQKITQIIEENLEMEKM 1254 Query: 164 NLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 ++ +A +C+S S L +K+K + S ++ + + +MR V++L+ I+++A + G+ Sbjct: 1255 DIAFIADKMCMSHSTLYRKIKGLTDMSANEFIRKVKMRKGVELLMSGQYTISEIAYMIGF 1314 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQ 249 SS +YF FK YG++P +Y+ KQ+Q Sbjct: 1315 SSVAYFRQCFKDEYGMSPSDYV-KQKQ 1340 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 R V + ++++ + W R +L +S S L+++L+ E S+ +++ + RM + + Sbjct: 194 RQGVLPRLSHLLRASPETDWTARSAGEALAMSESTLRRRLREEGGSFEKLLVDIRMHHGL 253 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 ++ N+ QVA CGY S S F F +GL P Sbjct: 254 MLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPP 290 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%) Query: 113 CEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 CEAEL+ L + R +A+ VRD I+ + QHY ++ VA L Sbjct: 226 CEAELSA----------LGERRRLAM-------RVRD----ILSNSEQHYLSIENVAEYL 264 Query: 173 CLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVF 232 +S LK++L E TS+S +V E R R+A +L + ++ Q+A GYS + F F Sbjct: 265 HMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIADELGYSDVANFSRAF 324 Query: 233 KAFYGLTPLNY 243 K + G +P N+ Sbjct: 325 KRWSGRSPSNW 335 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 54/94 (57%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQML 206 + D + ++I+SD W L A S +S + L+++L ENT +S+I+++ RM A+ ++ Sbjct: 164 LEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLI 223 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + QVA GY S S F + FK +G++P Sbjct: 224 HTTTLPMAQVALEVGYDSPSQFSARFKERFGVSP 257 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAV 203 SV +V RI Q ++ NL+ VA L L+PS L + K E S+SQ + + R ++A Sbjct: 382 ESVSQAVERIEQGYLEEL-NLKTVADELHLNPSYLGQIFKKETKRSFSQYLNQVRTKHAQ 440 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++LL + I ++++ G+++T+YF +FK G+TP + Sbjct: 441 KLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEF 480 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 L FLE S L S+ + R++ D + + +L VA L SP L++ L+ Sbjct: 241 TLKQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLR 300 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E TS+ ++ R A+ L D I +A+ G+S S F FK + GLTP Y Sbjct: 301 EEGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYR 360 Query: 245 AKQ 247 A++ Sbjct: 361 AQE 363 >UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_9BACE Length = 1344 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 19/147 (12%) Query: 121 LLFTVLSNFLEQSRFIALLMYI----------------LRSSVRDSVCRIIQSDIQ-HYW 163 LL + ++N LE + IA + + L + + +II+ +I+ Sbjct: 1199 LLHSCINNLLETRKKIASQLLLADVKPAQEQAVSSLNRLDNEFMQKITQIIEENIEMEKM 1258 Query: 164 NLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 ++ +A +C+S S L +K+K + S ++ + + +MR +V+ML+ I++++ + G+ Sbjct: 1259 DVAFIADKMCMSHSTLYRKIKGLADMSANEFIRKVKMRKSVEMLISGEYTISEISYMTGF 1318 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQ 249 SS +YF FK YG++P Y+ KQ+Q Sbjct: 1319 SSVAYFRQCFKNEYGVSPSGYV-KQKQ 1344 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 45/91 (49%) Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKN 212 R ++ I +R VA L LS S L K TS+S +TECR+R A +L + Sbjct: 159 RHMEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHLLRESDAK 218 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + VA CGY T YF +F+ G+ P Y Sbjct: 219 VYAVAAACGYQDTRYFSKIFQKHMGMKPTEY 249 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 47/79 (59%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VAS L +S + L++KL+N+NTSY ++ ECRM A +L + + ++AQ G+ S Sbjct: 266 VASQLHMSTTTLRRKLQNDNTSYQRLKDECRMEAAFHLLNCADLSNNEIAQKLGFDEPSA 325 Query: 228 FISVFKAFYGLTPLNYLAK 246 F FK + G TP Y A+ Sbjct: 326 FFRSFKKWTGQTPGEYRAR 344 >UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480T9_COLP3 Length = 331 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%) Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 +SDI + I+A SL +S L+++LK E TSY I E R A+ L+M N+NIT Sbjct: 239 ESDILFCPSFEILALSLNMSAQTLRRRLKVEGTSYPMIKDEIRRDLAIDYLVMTNRNITD 298 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++ G+S F FK + G++P Y Sbjct: 299 ISTALGFSEPRSFTRAFKQWTGVSPSKY 326 >UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas RepID=A5W7M3_PSEP1 Length = 309 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 NL+ VA++ LSP+ L L+ E ++S++V E RM A LL ++ + +VA+LCG+ Sbjct: 214 NLQKVAAATYLSPTYLTHWLRKEIGKTFSELVLERRMHAARNYLLNGSRPVGEVARLCGF 273 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQR 248 + +YF F+ +GL P + +QR Sbjct: 274 ADEAYFSRRFRQIHGLPPGQFRRQQR 299 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 45/81 (55%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 W +A L +S + L++KL E+TS+ Q++ E R+ + + ML + + QVA CGY Sbjct: 168 WQQEEIADKLHMSTASLRRKLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGY 227 Query: 223 SSTSYFISVFKAFYGLTPLNY 243 S F FK +GLTP Y Sbjct: 228 QSAEKFSLRFKQQFGLTPAAY 248 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 45/78 (57%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 W ++ +L +S S L+++L+ E + Q++ + RM +A+ ++ + N+ QVA CGY Sbjct: 204 WTAKVAGDALAMSESTLRRRLRQEGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADACGY 263 Query: 223 SSTSYFISVFKAFYGLTP 240 S S F F+ +G +P Sbjct: 264 KSVSRFTERFRYRFGNSP 281 >UniRef50_Q0VQ50 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VQ50_ALCBS Length = 354 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 137 ALLMYILRSSVRDSVCRIIQSDIQHYW-NLRIVASSLCLSPSLLKKKLKNENTSYSQIVT 195 A+ Y R ++ + V IQ+ +Q L +A L + P L+++L+ ENT +S ++ Sbjct: 236 AVTQYHARDNLLEQVRLEIQNRLQQGVPQLEPIADQLGIKPWTLRRQLRAENTDFSSLLE 295 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + R R A LL +++ Q+A GYS S F FK ++ +TP+ Y + Q Sbjct: 296 DERRRLACDWLLHSERSVNQIALDLGYSEQSAFNRAFKRWFSITPVQYRSHQ 347 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 50/95 (52%) Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQM 205 S+ V II +D+ + W + ++ L +S S +++KL E TS + R+ + + Sbjct: 166 SLSAKVHAIISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQ 225 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + + I +A+ CGY S S F + FK +G+TP Sbjct: 226 VQSTFQPINHIAEQCGYLSQSRFTNKFKQLFGVTP 260 >UniRef50_B2Q5D0 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q5D0_PROST Length = 351 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 Q DI W VA+ L +SP L++KL EN +YS I+ + R ++ L+ + I Sbjct: 259 QKDISLSW----VAAKLYISPRTLQRKLAKENINYSDILDKIRCDISIDKLVEEKIRIDS 314 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +A+L GY+ ++ F FK + G PL Y+ KQ Sbjct: 315 LAELLGYTDSAAFSKAFKRWTGSPPLQYIKKQ 346 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 9/90 (10%) Query: 159 IQHYWN--------LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 +QHY N L ++ L +SP LK++LK E T++ +++ + R R A+ LL D Sbjct: 283 VQHYLNTPDNGMPDLSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAIN-LLKDG 341 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 N+T++A+ G+S S F FK ++G++P Sbjct: 342 HNLTEIAERLGFSDLSSFSQAFKRWHGISP 371 >UniRef50_C6D7J5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7J5_PAESJ Length = 544 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 1/101 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 ++V + + I+ +I +L++VA +PS L + K++ N +Y VTE R+ YA Sbjct: 436 ENAVFNQIKGFIEKNIDQELSLQMVADHFFYNPSYLSRLFKSKLNQNYLSFVTEIRIDYA 495 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++L N+ +T V +CGY S +F+ +F+ G TP +Y Sbjct: 496 KKLLRDTNRLVTDVCTMCGYKSYKHFVKMFRLVAGTTPTDY 536 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYW-NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202 +++ + V + + +QH L+ VA L +S L++K K + T++ IV + R YA Sbjct: 225 KNAANEVVTQFVIDSLQHKVPTLQDVAEHLGVSARNLQRKFKQQGTNFKTIVDDIRKEYA 284 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 LL N +T +AQ+ G+S S F FK + G+TP Y Sbjct: 285 FTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWTGMTPGEY 325 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Query: 137 ALLMYILRS-SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVT 195 ALL + R+ + V RI+ + Y + VA +L + L+++L +E+T+Y Q+V Sbjct: 228 ALLGELKRTDGIEGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVL 287 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 E RM A L + +I ++A + GY+ S F F GLTP Y Sbjct: 288 EFRMELAASYLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAY 335 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTS 189 L + + LL +S+R+ + R + + N+ V++ +S + L + L E T Sbjct: 140 LRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSAHFAMSRATLARHLAAEGTG 199 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 + ++++E RM YA+ LL + + + +VA CGY S + F + FK Y LTP YL Sbjct: 200 FREVLSEVRMNYAL-ALLQELRPLMEVAVACGYQSLTRFSARFKQQYRLTPYQYL 253 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 152 CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDN 210 R I + Q +L +VA + +SP+ KK K + + +T+ R+ A ++L + Sbjct: 179 ARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQITGVGFKEYLTKTRLYEATELLTHTS 238 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 N+T++A CG++ +YF F+ +GL+PL Y ++RQK Sbjct: 239 LNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQY--RKRQK 276 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 15/122 (12%) Query: 141 YILRSSVRDSVCRIIQ---SDIQHY---------WNLRIVASSLCLSPSLLKKKLKNENT 188 ++L + ++++ ++ Q +D HY N+ +A +L LS S L +K+K+ T Sbjct: 814 FLLNETKQETLGKVEQQFITDFTHYVENSIANPEMNIDEIADALGLSRSNLYRKIKSL-T 872 Query: 189 SYS--QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 YS +++ R++YA Q+L K+I++VA G+SS SYF FK FY +P YL + Sbjct: 873 DYSPNELIRTIRVKYAKQLLNSKAKSISEVAYEVGFSSPSYFAKCFKDFYNESPTEYLER 932 Query: 247 QR 248 R Sbjct: 933 IR 934 >UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=Clostridium perfringens RepID=Q0TS33_CLOP1 Length = 506 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTS-YSQIVTECRMRYA 202 S+ + V +II+++ +L +A + +P+ L K E S + +T+ RM A Sbjct: 401 EKSIANKVIKIIKNEYSSELSLDYIADKVNFTPTYLSYVFKKETGSNIVKYITDFRMNKA 460 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + L N I QV + CGY + SYF +FK ++G+TP Sbjct: 461 KEFLEEGNMKIVQVGKACGYENQSYFNRIFKNYFGVTP 498 >UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJE3_VIBVY Length = 243 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 R ++ II SDI+ WN + + S L +S S L + LKNE + IV R+ + Sbjct: 136 RKEYNKNIVEIINSDIKKKWNYKEICSLLFVSHSTLYRTLKNEGKTLKMIVLHIRIINSQ 195 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++L+ N +I +++ CG++S SYF FK ++P Y Sbjct: 196 KLLVNTNMSINEISNRCGFNSPSYFSRKFKDSVKMSPTEY 235 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 V R++ + H+ ++ A L +S L+++L E T+Y ++V + RM A L Sbjct: 244 VRRLLANAPGHHPSIEDAAGKLAMSERSLRRRLSEEGTTYKEVVLDFRMELASSYLRGRE 303 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 I +VA L GY+ S F F +YG TP + A ++ Sbjct: 304 MTIQEVAFLAGYADASNFHRTFSRYYGATPGEFRAGEQ 341 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 2/108 (1%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 R +R+++ + I ++ +L+ VA + L+PS K + ++S+ +T RM+ A Sbjct: 153 REPIREAI-QFIDQRLKDDISLKDVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRA 211 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 ++L+ + + ++A+ CGY + YFI +FK G TP +Y Q+ K Sbjct: 212 KELLMTTDMTVAEIAEECGYRTAKYFIHLFKEMEGKTPSSYRKSQKGK 259 >UniRef50_C6D6I4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6I4_PAESJ Length = 501 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%) Query: 153 RIIQSDIQ----HYWN----LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 R++Q +Q HY N LR +A + LS + L K E S Q +++ R+ A Sbjct: 398 RLVQDVLQYIAAHYQNPDLDLRTIADHMHLSTAHLGMLFKQETGVSMKQYISDYRIGLAK 457 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++++ ++ + +A+LCGY+S SYF VFKA L+PL Y K Sbjct: 458 KLVMSEHYKMNTIAELCGYASASYFAKVFKASTDLSPLEYRKK 500 >UniRef50_Q5LKF5 Transcriptional regulator, AraC family n=1 Tax=Ruegeria pomeroyi RepID=Q5LKF5_SILPO Length = 331 Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA L L+P L+++LK + YS I + R AV++L ++ +A G+S S Sbjct: 251 VARDLNLAPHTLRRRLKGDGVDYSNIRKQVRRDMAVRLLATTGDSVESIAAQTGFSEASA 310 Query: 228 FISVFKAFYGLTPLNY 243 FI F+++ GLTP Y Sbjct: 311 FIRAFRSWTGLTPRAY 326 >UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXJ1_9GAMM Length = 331 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 144 RSSVRDSVCRIIQSDIQHYW--NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRY 201 R +V D V ++ QH+ +L VA L +SP L +KLK ENT + Q+ + R Sbjct: 230 RGTVSDQVLALLH---QHHGKASLDTVADQLHMSPRTLIRKLKQENTRFQQLRDQTLSRR 286 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 A Q+L + + + VA+ GY+ + F F+ ++G TP ++ Sbjct: 287 AAQLLGLPHYTVAAVAEDLGYTDVASFRRAFQRWFGTTPGSF 328 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Query: 138 LLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 +L + + S+ D V R+++ +I ++ VA +L +S L +KLKN+N+SYS IV Sbjct: 230 ILSRLFKRSISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRKLKNDNSSYSDIVEA 289 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + A ++L + +T +A G+S S F FK + GL+P + Sbjct: 290 VKKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAEF 336 >UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2D8_MARAV Length = 343 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 165 LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 L VA L + P L+ +L TS++Q++ + R R A Q+L +++I ++ L G+S Sbjct: 251 LDAVAERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQLLATTDESIDEIVYLTGFSE 310 Query: 225 TSYFISVFKAFYGLTPLNY 243 S F FK + G+TP+ Y Sbjct: 311 PSTFYRAFKRWSGMTPIEY 329 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 + ++I D+ W + VA L +S + L+++L NE S+ +++ +M A+ +L Sbjct: 168 IRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELLGNIKMMRALTLLQTSP 227 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + QVA GY S + F + F+A +G TP Sbjct: 228 LGVAQVAYAVGYESPARFAAKFRAHFGCTP 257 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQS--DIQHYWNLRIVASSLCLSPSLLKKKL 183 L L+++ ++ L+ +S+ + RI+Q D + VA L S L+++L Sbjct: 211 LPELLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRL 270 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 K ENTS+ I + R A+ L N +I ++A G++ S F FK + G+TP +Y Sbjct: 271 KEENTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDY 330 Query: 244 LAKQRQ 249 ++Q Q Sbjct: 331 RSEQAQ 336 >UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=Bifidobacterium RepID=A1A117_BIFAA Length = 248 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 167 IVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 I+A + L+P+ L + K E T+ SQ +T+ RM A ML + ++AQ+ Y S Sbjct: 159 ILAEHVHLNPTYLSELFKRETGTAISQYITDKRMEAAENMLKYSEYSFDEIAQILAYRSQ 218 Query: 226 SYFISVFKAFYGLTPLNYLAKQRQKVMW 253 S+F VFK G+TP Y K Q +W Sbjct: 219 SHFSKVFKKHSGMTPGEYRTKYAQNGIW 246 >UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=2 Tax=Photobacterium RepID=Q1ZVK9_PHOAS Length = 259 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 LF L+N S ++ L + S RD + + D + ++ V LS S L + Sbjct: 135 LFEHLAN----SGYLHQLFSMRNLSWRDKLTQYFNDDPKANHSIESVCDHFGLSKSTLIR 190 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 +LK+ENT + ++ E RM YA+ +L + ++A LCGY S + F F+ +GL+ Sbjct: 191 RLKDENTQFRDVLAELRMGYALSLLQTKPYSQIELAHLCGYKSEARFAQRFQHQFGLS-- 248 Query: 242 NYLAKQRQKVM 252 KQ QK Sbjct: 249 ---LKQYQKTF 256 >UniRef50_Q5G2X8 Putative Arac-type regulatory protein (Fragment) n=1 Tax=Citrobacter sp. MY-5 RepID=Q5G2X8_9ENTR Length = 170 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 65/117 (55%) Query: 58 INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAEL 117 ++R+ ++ +L L + + ++++ ++ SR VF+ A S+ + R E Sbjct: 54 VSRDTLSLFLPMLKEEALNLHAHKKVSSLLVHHCSRDIPVFQEVAQLSQNKNLRYAEMLR 113 Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 RAL+F +LS FLE FI LL+ +L+ ++R VC +I ++I H W L +AS L + Sbjct: 114 KRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLM 170 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 2/127 (1%) Query: 114 EAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLC 173 +A L A + +L+ +L +L+ R + V +++ D W++ VA SL Sbjct: 135 DALLQHAAMGVLLALYLAGQ--AGVLLIDRRDKWAEQVQQVLLLDPARNWSVSDVARSLH 192 Query: 174 LSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 + S L++KL E+ S+ I+ E RM A+ L + +I ++A GY S S F S F+ Sbjct: 193 IGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQ 252 Query: 234 AFYGLTP 240 +GLTP Sbjct: 253 QHFGLTP 259 >UniRef50_B6XD52 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XD52_9ENTR Length = 282 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRII-QSDIQHYWNLRIVASSLCLSPSLLKKKL 183 VLS FL ++ F L + +D V I + + L ++A L +S S LK++L Sbjct: 159 VLSFFLLENTFYPTLQTSMNVLTKDKVYDYIYHNSGKQNCTLELIAKQLHMSTSTLKRRL 218 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT-PLN 242 +E+T++S I RM A+ + +DN + ++AQ GY +FI FK FY + PLN Sbjct: 219 ASEDTNFSTISLTSRMNKAMMLSKVDNMPMPRIAQEVGYDDIPHFIQAFKNFYQQSQPLN 278 >UniRef50_A4A3Z8 Transcriptional regulator (AraC family protein) n=3 Tax=unclassified Gammaproteobacteria RepID=A4A3Z8_9GAMM Length = 356 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 44/76 (57%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA++L L P L+++L E ++ QI ++ R A+ L + ++ +VA G+S S Sbjct: 277 VAAALDLHPQTLRRRLAAEGNTFKQIKSDIRRDTALHFLGKRSLSVEEVAHRAGFSEASA 336 Query: 228 FISVFKAFYGLTPLNY 243 FI FKA+ GLTP Y Sbjct: 337 FIRAFKAWTGLTPYAY 352 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 L VL EQ + Y+ SV ++V +I+ + H W+ VA+SL +S + L++ Sbjct: 117 LLEVLLILAEQGALPLMPKYV-DGSVTEAVRLLIRHRLDHAWSTAAVAASLSMSEATLRR 175 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 +L++EN S ++ RM+ A +L + ++ + GY+S S+F F+ +G P Sbjct: 176 RLRDENQSLRALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQDAFGQAP 234 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 133 SRFIALLMYILRSSVRDSVCRIIQ---SDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NT 188 RF + ++ RD +C+ I+ + + L A + LSPS + K E Sbjct: 293 DRFTDTVFSLVEVKHRDIICKAIEYLKRNCRDRVTLEDTAGHVGLSPSYFSRVFKEEVGE 352 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 S++ +T R+ MLL + +I ++ CG+ SYF VF+ + G+TP + A++ Sbjct: 353 SFNSYLTALRISRGRAMLLDTDASIAEICDRCGFDDQSYFTKVFRKYTGVTPGRFRARR 411 >UniRef50_A8MKS9 Two component transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKS9_ALKOO Length = 253 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 159 IQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNIT--Q 215 +Q +++ VA +S S L K +K+E ++ + +TE RM A ++L +N NI + Sbjct: 158 MQEDLSMQEVADRFDISLSYLGKLMKHELGKTFIEYLTEVRMESAKKILQEENINIKIHE 217 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNY 243 VAQL GYSS YF VFK G+TP+ Y Sbjct: 218 VAQLVGYSSQHYFSRVFKKEIGITPIEY 245 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA L LSP L+++LK E TSY ++ R A+ L +I ++AQ G++ S Sbjct: 251 VAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSA 310 Query: 228 FISVFKAFYGLTPLNY 243 F FK + GLTP +Y Sbjct: 311 FHRAFKKWVGLTPSDY 326 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 + R ++ I + +VA L +S S LK+KL+++ S++ +V R+ YA L + Sbjct: 168 LIRYVEEHISADLTIDMVAPKLGMSASTLKRKLQSDKLSFAHLVKVKRINYAATQLRLTR 227 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 K IT++A G+ + ++F + FK+ G+TP + Sbjct: 228 KTITEIAYDTGFKTAAHFSTSFKSVKGITPKEF 260 >UniRef50_A9U7M3 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7M3_PHYPA Length = 385 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 7/83 (8%) Query: 165 LRIVASSLCLSPSLLKKKLKNEN----TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLC 220 L +A+++ +SPS L ++ K E TSY + R+R A+Q++ + +IT +AQ+ Sbjct: 292 LEAIATAVHVSPSDLSRQFKKETGQPLTSY---INSLRIREALQIIRSEPISITDIAQMV 348 Query: 221 GYSSTSYFISVFKAFYGLTPLNY 243 G+S +YF VFK G+TP +Y Sbjct: 349 GFSDVNYFTKVFKQLQGVTPSDY 371 >UniRef50_D2QI98 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QI98_9SPHI Length = 251 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 +++ A +L +S S LK++LKN ++++S +V E R++ A +LL + ++ Q++ LCG Sbjct: 160 FSIEKAALNLFMSTSTLKRRLKNYLDSNFSDLVKEFRLKKADNLLLNSDYSLEQISVLCG 219 Query: 222 YSSTSYFISVFKAFYGLTPLNY 243 +SS SYF FKA Y + P Y Sbjct: 220 FSSLSYFSRSFKASYKINPNQY 241 >UniRef50_C0EGH4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGH4_9CLOT Length = 344 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 164 NLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L A +P+ L + L K YS+IV +M AV LL N +I ++A++ GY Sbjct: 259 DLASTAKQFGFTPNYLSQYLYKYTGYHYSEIVLNIKMHNAVNYLLHSNSSIPEIAEMTGY 318 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQ 249 S SYF VFK +G++P+ Y QRQ Sbjct: 319 SDVSYFRKVFKKEFGVSPVAY-RNQRQ 344 >UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=Acinetobacter RepID=A3M2M8_ACIBT Length = 335 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA SL LS L++KL ENTSYS+++ + R A+ + + NIT++A + G++ S Sbjct: 252 VAKSLGLSIRSLQRKLSAENTSYSELLDQTRHELALSYIKNSSHNITEIAYILGFTDVSS 311 Query: 228 FISVFKAFYGLTPLNYLAK 246 F F+ + L+P++Y K Sbjct: 312 FTRAFRRWTDLSPIHYREK 330 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLK 184 L FL+ + + L+M +S++ V ++ D + + VAS+L +S S L+++L Sbjct: 219 LRGFLKTAPYQLLVMVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLN 278 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +E TSY I +CR A+ + +I +A L G+ S F FK + G+TP Y Sbjct: 279 DEKTSYQSIKDDCRKEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEY 337 >UniRef50_C6D226 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D226_PAESJ Length = 537 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%) Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 +RS + + + R IQ +I+ L+ VA + L P + K E ++S V RM Sbjct: 433 IRSDLMERIRRFIQENIKDI-TLQTVADHVNLHPVYVSNLFKQETKENFSNYVLRLRMER 491 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 AVQ+L + I+Q+A GY YFI +FK YG+TP + Q Sbjct: 492 AVQLLKNKDLRISQIALEVGYQKPQYFIKLFKTQYGMTPQEFKNGQ 537 >UniRef50_B2I366 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2I366_ACIBC Length = 341 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 138 LLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTEC 197 L Y L VR ++ ++S L VA+ L ++P L+ +L NTS+ QI+++ Sbjct: 232 LARYDLVGEVRRAIGSTLESGET---TLETVAAQLNITPRRLRTQLSEANTSFQQILSDY 288 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 R R A ++L N+++ ++ L G+S S F FK + TP+ Y +++ + Sbjct: 289 RCRLAKKLLANTNESVERIVYLTGFSEPSTFYRAFKRWTNETPVEYRKRKQHR 341 >UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VH68_PSEU5 Length = 346 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 45/76 (59%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA++LC+SP+ L+ KL +T + Q++ E R A L + +T++ L G+S TS Sbjct: 267 VANALCMSPTTLQLKLSQRSTHFQQLLDETRKDLACSYLRQVTRPVTEITFLLGFSDTSN 326 Query: 228 FISVFKAFYGLTPLNY 243 F FK + GL+P N+ Sbjct: 327 FTRAFKRWTGLSPTNF 342 >UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family) protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E6_9GAMM Length = 340 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 165 LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 L VA L ++ L+ L T+++Q+V E R A +L+ N+ I Q+ L G+S Sbjct: 247 LDAVAERLGMTQRYLRSALSQAGTTFNQVVAEYRCMLAKHLLMKTNETIDQIVYLTGFSE 306 Query: 225 TSYFISVFKAFYGLTPLNY--LAKQRQKVM 252 S F FK + GLTPL+Y AK ++K M Sbjct: 307 PSTFYRAFKRWTGLTPLDYRKQAKVQRKSM 336 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYS--QIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 N+ +A +L LS S L +K+K+ T YS +++ R++YA Q+L K+I++VA G Sbjct: 818 NIDEIADALGLSRSNLYRKIKSL-TDYSPNELIRTIRVKYAKQLLNSKAKSISEVAYEVG 876 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQR 248 +SS SYF FK FY +P YL + R Sbjct: 877 FSSPSYFAKCFKDFYNESPTEYLERIR 903 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Query: 151 VCRIIQSDIQHYWN----LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 V R Q ++H+ N L +A +L SP+ L + +K E T+++ +T+ R+R A ++ Sbjct: 303 VRRAKQYMLEHFSNSGLTLEAMAQALQTSPAYLSRMIKQELGTTFNSYLTQLRIRRASRL 362 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 L+ I ++A+ GY + YF + FK GL+PL Y Sbjct: 363 LIATELTIAEIAEQVGYETQHYFSTAFKRATGLSPLQY 400 >UniRef50_B8KT68 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KT68_9GAMM Length = 354 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 98 FRLAANHSKQQPSRPCEAELTR-ALLFTVLSNFLEQSRFIALLMYILRSSVR---DSVCR 153 F AN K P E L+R LLFT+LS ++ + L S D+VCR Sbjct: 192 FGAKANGIKFHPGYLDEPFLSRNKLLFTILSRAIDS-------YFSLGSDGNGFVDTVCR 244 Query: 154 IIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKN 212 I D ++ + ++A L +SP L+++L +E ++ + R + A +L+ N + Sbjct: 245 EIMVDTGNFNSDAAVIADRLRMSPRTLRRRLADEGHTFRDAKRQAREQRAKYLLVNSNFS 304 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 ++++A GYS S F F+A+ G P Y R Sbjct: 305 LSEIAFELGYSELSAFSRAFRAWTGEAPQAYRESARH 341 >UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDX1_SPHWW Length = 331 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 132 QSRFIALLMYILRSSVRD----SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN 187 +R++ + +R+ V D SV R++ + +L VA+ L LS L+++L + Sbjct: 204 HARWMRACIRTIRAMVEDRLLESVRRLVNTATDDAPSLSDVAARLHLSARTLRRRLADRG 263 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 S+ +IV E R A+Q ++ + +A+ GYS ++ F F+ + G +P NYLA Sbjct: 264 VSFMRIVDEERRSLALQYVMGGEMTVESIAERLGYSESANFRHAFRRWTGSSPRNYLA 321 >UniRef50_B2ICW5 Transcriptional regulator, AraC family n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2ICW5_BEII9 Length = 338 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 46/80 (57%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +++ VA LC++P L + L+ E ++ ++ E R+ A +L N + +A GYS Sbjct: 253 DMKDVAKDLCVTPRTLHRHLEEEGVTFLELRDEVRLTLAENLLQNRNLLVKDIASRLGYS 312 Query: 224 STSYFISVFKAFYGLTPLNY 243 S + FIS F+ + G+TPL Y Sbjct: 313 SATSFISAFRRWKGMTPLVY 332 >UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001968F18 Length = 1345 Score = 57.4 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 149 DSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQML 206 D V II +I + + ++A + +S L +KLK N S ++ R++ A +L Sbjct: 1235 DKVMNIINRNISNPELTVEMIAKEIGISRVHLHRKLKELTNQSTRDLIRNVRLKQAANLL 1294 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 + ++T+VA L G+SS + F FK YG+TP Y+ K +V Sbjct: 1295 IYKRYSVTEVASLTGFSSITLFSRSFKELYGMTPSEYIGKHSNEV 1339 >UniRef50_C7CT88 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7CT88_ENTFA Length = 372 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 NL+ +A + L+P+ L + LK E +SQ + ++ +A Q+LL +K I Q+++ G+ Sbjct: 241 NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF 300 Query: 223 SSTSYFISVFKAFYGLTPLNY 243 SYF+ +FK G TPL Y Sbjct: 301 VEDSYFVRIFKQETGETPLKY 321 >UniRef50_Q169B6 Transcriptional regulator, AraC family, putative n=2 Tax=Roseobacter RepID=Q169B6_ROSDO Length = 337 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW-NLRIVASSLCLSPSLLKKKL 183 +L L+Q++ I + ++S + V +I++ + H + +A +L LS L ++L Sbjct: 213 LLGLLLDQAKAIEAKVSHAQASTAEKVEVLIEAGLAHEVPKISDIAHALGLSQRTLARRL 272 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 TSYS I+ R+R A + L I +++ GY ST+ F + FK GL+P Y Sbjct: 273 NEAETSYSGILNHVRLRVAARELRESKNQIGEISWRLGYGSTASFSTAFKRETGLSPREY 332 >UniRef50_B9BAR1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAR1_9BURK Length = 378 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 11/119 (9%) Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCR----IIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 S+F+E+ R + L SV D+ R +++ +++ N+ ++A + S L++ Sbjct: 253 SSFVERRRALGYL------SVDDATVRHAALLMEENLEAPLNIAVIAKMVGTSVRQLERA 306 Query: 183 LKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 E S ++ R+RYA MLL ++ +T +A CG++ +++FI VF+ YG+TP Sbjct: 307 FMAEMKVSPNEFYRRMRLRYARWMLLNTSRKVTDIAYDCGFADSAHFIRVFREAYGVTP 365 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 + V +I SD W + +A + +S S KKK+ + S S +T+ +M A++ L Sbjct: 186 EKVASLIMSDYSKNWQSKDLAMQMNMSVSTFKKKMYKDTGSVSSYITKIKMIEALRQLRR 245 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 N+ I +A GY+S+SYF SVFK + + P Sbjct: 246 TNRPINSIAISLGYTSSSYFTSVFKKHFKIFP 277 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%) Query: 116 ELTRAL---LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 EL++A+ L L +L + + LL S + + + D + + V Sbjct: 127 ELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTIEQVCQQF 186 Query: 173 CLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVF 232 LS + L ++L +E+T + +++ + RM +A+ +L ++ + ++AQ CGY S F F Sbjct: 187 GLSKATLMRRLNDESTQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSEVRFTQRF 246 Query: 233 KAFYGLTPLNY 243 + +GL+P Y Sbjct: 247 QKQFGLSPKQY 257 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 53/108 (49%) Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQ 192 S + A+ + S+ + V +I + +A+ L +S S L++KLK+E S Sbjct: 77 SGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQD 136 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 I R+ + + ++ N +I +A CGY S S F FK +G+TP Sbjct: 137 IRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITP 184 >UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MT39_SACVD Length = 321 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQML 206 VRD R++ +D H ++ VA+ L ++ L+++L E TSY +V E R A ++L Sbjct: 215 VRD---RLLATDGLHT-DMDTVAAELAMTARTLRRRLAAEGTSYRALVDEVRQTLAEELL 270 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + ++ QVA GY + F+ F + G+ P Y R Sbjct: 271 ATRSLSVEQVAYRLGYGDAASFVRAFTRWKGVPPGRYARSGR 312 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 44/246 (17%) Query: 11 VILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFL 70 V LTE E V ++ F P L FA N ++E + L + L+T + D + Sbjct: 124 VRLTELEHTVQIDILEAF--PLGRLRQFAVENFMVETAILFNSLLTPSH-----DKTMKA 176 Query: 71 NKNLTCVKP----WSRLATPVIACHSRTP------------EVFRLAANHSKQQPSRPCE 114 N L P ++R + CH P E R A H+ Q + CE Sbjct: 177 NAELCFEWPEPPYFARYRDRLPRCHFGAPANQIRCEAALLDEPIRTANAHTAQMIVQQCE 236 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 AEL R L Y S+ + V ++ Y +L +A L L Sbjct: 237 AELAR-------------------LGYA--ESIVERVRNLLIRGNNGYPSLDALARELHL 275 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 S LK+KL + +YS ++ E R+R A+++L + + ++A GY+ + F F+ Sbjct: 276 SERTLKRKLSDYGATYSALLDEIRLRDALRLLEGTHLTVEEIAARVGYTDRANFSRAFRR 335 Query: 235 FYGLTP 240 + G +P Sbjct: 336 WTGTSP 341 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 165 LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L+ +A + LS + + + K E +Y++ + + RM A ++L + A L GYS Sbjct: 453 LQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQTLKVADAAALVGYS 512 Query: 224 STSYFISVFKAFYGLTPLNYLAKQR 248 +TSYFI +FK + GL+P Y+ +QR Sbjct: 513 NTSYFIKLFKNYTGLSPSEYMEQQR 537 >UniRef50_A3J4H6 Two-component system sensor histidine kinase/response regulator, hybrid ('one component system') n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J4H6_9FLAO Length = 254 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 5/106 (4%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAV 203 + D V R I++D+ + +AS + +S S + KK++ + + S + E R+ YA+ Sbjct: 151 DKIDDIVIRNIKTDV----TIEKLASEIFVSKSTIDKKIRKFKQVNVSTYIREIRLNYAI 206 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +++ N+ +A CG++STSYF FK + GL+P Y+ ++ Q Sbjct: 207 KLIESGEVNVDTLAIECGFNSTSYFSVCFKNYSGLSPKKYINQKIQ 252 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L+ VA L ++ L ++L+ E TS+ QI CR A+ L +++++L G+S Sbjct: 271 GLQEVAERLYMTTPTLHRRLREEQTSFQQIKDHCRRDAAIGYLSSAQYTTSELSELMGFS 330 Query: 224 STSYFISVFKAFYGLTPLNYLAKQ 247 +S F FK + GLTP +Y K Sbjct: 331 DSSTFHRAFKKWTGLTPQDYRKKH 354 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 53/108 (49%) Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQ 192 S + A+ + S+ + V +I + +A+ L +S S L++KLK+E S Sbjct: 153 SGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQD 212 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 I R+ + + ++ N +I +A CGY S S F FK +G+TP Sbjct: 213 IRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITP 260 >UniRef50_B8KKT6 Transcriptional regulator, AraC family n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B8KKT6_9GAMM Length = 350 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 42/77 (54%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +L A L L+P L+K+L E TSY +IV E RM A LL ++ ++A L YS Sbjct: 264 SLEAAAQQLHLTPGQLRKRLYREGTSYKRIVLEIRMELARHYLLDTGLSVQEIAYLLDYS 323 Query: 224 STSYFISVFKAFYGLTP 240 + + F FK + GL P Sbjct: 324 TPAPFSRAFKRYCGLAP 340 >UniRef50_A8EX63 Transcriptional regulator, AraC family n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EX63_ARCB4 Length = 283 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 ++ +D + I++S++ + + S +PS ++K K+E NT+ + E R+ A Sbjct: 180 NTTKDRIKYILESNLDFVNSFEDICSLTRQNPSKIRKYFKDEFNTTPKLWINEKRLEKAT 239 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +L ++ I+Q+A CGYSS S+FI FK Y LTP +Y K Sbjct: 240 LLLKTTDETISQIATSCGYSSVSWFILEFKKRYNLTPKDYRYK 282 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 54/99 (54%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 V R+I++ L VAS+L +S LK++L+ E S+ +V + R+ A +L Sbjct: 244 VRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLLASTT 303 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 N++Q+A GY+ + F FK + GL+P ++ ++ Q Sbjct: 304 MNLSQIADSLGYADAANFTRAFKRWTGLSPSHFRNRELQ 342 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 60/108 (55%) Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMR 200 ++++S R V +I++ N + +A +L +S L++KLK+E TS+ ++ + R++ Sbjct: 78 FVVQSISRGVVDKIVEHLPDGPPNQQQIAQALHVSNRTLQRKLKDEGTSFMDLLQDTRLQ 137 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 A + L N+++ + A + G+S S F FK + G+ P ++ R Sbjct: 138 LARKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPADFRDSHR 185 >UniRef50_C5ET72 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET72_9FIRM Length = 539 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 164 NLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L +AS L +SPS L + K + S + +T CRM +A +L + +I Q+++ GY Sbjct: 445 SLNTIASELLVSPSYLSRSFTKIQGISLTAYITRCRMEHARDLLKNTDMSIAQISEQSGY 504 Query: 223 SSTSYFISVFKAFYGLTPLNY 243 S YF FK+F+G+ P Y Sbjct: 505 SDLFYFSKRFKSFWGVPPSRY 525 >UniRef50_B4SQ42 Transcriptional regulator, AraC family n=5 Tax=Xanthomonadaceae RepID=B4SQ42_STRM5 Length = 293 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 173 CLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 LSP L + ++E T S++Q + R+ A++ L D +++ +A G+SS S F++V Sbjct: 198 GLSPRSLTRHFRDETTLSFAQWRQQARLSEALRQL-TDGRSVADIAHALGFSSASAFVTV 256 Query: 232 FKAFYGLTPLNYLAK 246 F+ +GL P YLA+ Sbjct: 257 FRRHFGLPPGRYLAR 271 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%) Query: 162 YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 Y +L VAS L +S L +KLK E TSY ++ R A LL + Q+A+ G Sbjct: 255 YPSLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWYLLETTVAVEQIAERLG 314 Query: 222 YSSTSYFISVFKAFYGLTP 240 Y TS F F+ ++G+TP Sbjct: 315 YQDTSNFSRTFRRWFGMTP 333 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLK 184 L FL+ + L+ + +S+ + +++S I + L VAS L LSP L+++L Sbjct: 211 LEEFLKAAPAQLLVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLA 270 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 E SY + R A+ +LL + VAQ G+S TS F FK + G+TP Y Sbjct: 271 AEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLY 329 >UniRef50_B7S1T1 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1T1_9GAMM Length = 361 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 46/79 (58%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A+ L +S S L+++L+ E+TSY Q+ E R + A+ LL ++ + ++ G++ S Sbjct: 274 IAAQLHMSESSLRRRLQGESTSYQQLKDEVRCQVAIDKLLNEDSKVADLSDYLGFTEPSS 333 Query: 228 FISVFKAFYGLTPLNYLAK 246 F+ FK + G TP Y K Sbjct: 334 FVRSFKNWTGETPRTYREK 352 >UniRef50_B5JY44 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY44_9GAMM Length = 337 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Query: 145 SSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 SS+ V + I+S I + ++++ +A L ++ L+++LK E TSY+Q+ R R+A Sbjct: 232 SSLAAEVVQAIESKIGYAVFSMQDIAGELNMTQRTLQRRLKEEGTSYAQLRDSVRFRFAE 291 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + L + ++ +A G+S + F + FK + G++P Y Sbjct: 292 EYLRDSSMDMATIAANLGFSEPANFYAAFKRWQGMSPGEY 331 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNI 213 I+ I H +L VA +L L+P L++KLK+E ++ I + + + A+ +L N+ Sbjct: 259 ILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEGHTFLVIANDIQQQRAMHLLRQTQLNV 318 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++VA + GY+ S F FK + G TP Y Sbjct: 319 SEVAYMLGYAEPSVFRRAFKRWTGKTPKEY 348 >UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID=D2EZ28_9BACE Length = 1354 Score = 56.6 bits (135), Expect = 8e-07, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 151 VCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLM 208 + +II+ +++ ++ +A +C+S S L +K+K + S ++ + + +M+ V++LL Sbjct: 1256 ITQIIEDNLEMEKMDIAFIADQMCMSHSTLYRKIKGVADMSANEFIRKVKMKNGVKLLLS 1315 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +I++++ + G+SS +YF FK +G+TP Y+ ++ Sbjct: 1316 GKYSISEISYMTGFSSVAYFRQCFKNEFGMTPSEYVKQK 1354 >UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photobacterium angustum S14 RepID=Q1ZU86_PHOAS Length = 239 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 54/100 (54%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 S + +S+ ++ +D++ W+ ++ L LSP+ L ++L +NTS ++ R+ A Sbjct: 135 ESDIINSITCLVSNDLKRKWSYDLICELLYLSPATLYRELSKKNTSLKELTNNLRLTEAA 194 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +L + ++A G+ S+SYF VFK + TP+ Y Sbjct: 195 TLLRGTKLPVGKIANEVGFGSSSYFGKVFKQTFNCTPVEY 234 >UniRef50_B0TKW3 Transcriptional regulator, AraC family n=3 Tax=Shewanella RepID=B0TKW3_SHEHH Length = 347 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 12/109 (11%) Query: 135 FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIV 194 +I+ ++ ILR + C +++Q+ +S L++KL N NTSY ++V Sbjct: 237 YISEILTILRQQAPELACMESMAELQN------------ISARTLRRKLANANTSYQKLV 284 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + R + A+ ++L N +I ++++L G+S S+F FK + G P ++ Sbjct: 285 DQVRCQKAIDLILTSNYSIDEISELMGFSDVSHFRQSFKHWIGYPPGHF 333 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 V +I+ D + +A +L ++ L + K E N S+SQ + R++ A +LL Sbjct: 392 VLQIVLKDYAQDITISSIADTLHMNAMYLGQLFKKETNKSFSQYLNHFRIKEAQNLLLKS 451 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 N NI ++A+L GY+S+ YF FK G++P Y Sbjct: 452 NHNINEIAELVGYTSSGYFYKNFKKECGISPKEY 485 >UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37D6C Length = 748 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Query: 149 DSVCRI---IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 D +C++ ++ + WN+ +A SL LS S L+K K N S + + E R+ A + Sbjct: 639 DKLCQLRGKMRKHPEEQWNISTIADSLYLSKSYLQKIYKTYFNKSIIEELIEFRLEKAKE 698 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +L N IT ++ CGYSS +YF+ F+ G++P Y Sbjct: 699 LLTETNMTITDISHECGYSSYNYFVRQFRHSEGVSPTEY 737 >UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q0VNT5_ALCBS Length = 337 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 46/80 (57%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 NL VA L + L+ +L + T+++Q+V + R R A ++L +++I ++ L G+S Sbjct: 247 NLEEVAERLGIKARQLRTRLADAGTNFNQLVADYRCRLAKRLLAGTDESIDEIVYLTGFS 306 Query: 224 STSYFISVFKAFYGLTPLNY 243 S F FK + G+TP+ Y Sbjct: 307 EPSTFYRAFKRWVGMTPIEY 326 >UniRef50_A3YC06 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YC06_9GAMM Length = 356 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 12/124 (9%) Query: 137 ALLMYILR---------SSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNE 186 ALL YI R SS+ V +I I+ +N VA L +S L +KL E Sbjct: 223 ALLGYIDRNMDEVNQTESSLHSQVKHLIAEGIKTGRFNSHEVAVKLNMSRQTLHRKLAQE 282 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY--L 244 +T++S I+ E R V L+ D ++++ G+ S F FK+++ +TP Y L Sbjct: 283 DTNFSAILAEVRKEKVVHFLISDQHVFDEISEALGFKEPSAFYRAFKSWFNMTPNKYRQL 342 Query: 245 AKQR 248 KQR Sbjct: 343 MKQR 346 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 116 ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS 175 E T+A L L+ + + LL ++ + + R + + L VA +S Sbjct: 125 EATQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMS 184 Query: 176 PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 + + +KL E S+ Q++T+ RM +A+ LL + A CGY S S F + FK Sbjct: 185 RASMARKLAAEGRSFRQLLTQVRMSHAL-TLLQQGLVPLETALACGYDSPSRFAARFKQE 243 Query: 236 YGLTPLNYL 244 +GLTP YL Sbjct: 244 FGLTPYQYL 252 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYA 202 RS + D+V R I++ + NL ++A+ LSP+ L +K + S + + R+ A Sbjct: 375 RSEIVDNVIRYIKNHYKEDINLNVLANEFFLSPAYLSRKFSQTTGVSIMSYLEDYRINVA 434 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +L ++I+++A GY +YF +FK G+TP + Sbjct: 435 TDLLKGSERSISEIADQVGYYDANYFTKIFKKVKGITPKEF 475 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 5/150 (3%) Query: 104 HSKQQPSRPCEA----ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI 159 H++ + RP A +L+ AL +L + + ++ +L + + Sbjct: 163 HAEAETPRPGGAAIIADLSTALFTVLLRTLISRGTVTRGVLALLADTRMAKAVDAVVGSP 222 Query: 160 QHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218 + W + +A S +S + L ++ + ++VT RM A ++L DN + VA+ Sbjct: 223 ERPWTIESLAQSANVSRATLARRFTQLGGITPLELVTTLRMERAARLLQQDNLSAAAVAE 282 Query: 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 CGY+S + F F +G+ P Y +QR Sbjct: 283 RCGYASQAAFGRAFSGQFGVGPGAYRRQQR 312 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L+ VA L L+ + L K+ K E +S + RM AV++L N ++Q+A+ GY Sbjct: 324 SLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMDRAVELLAETNMKVSQIAKKLGY 383 Query: 223 SSTSYFISVFKAFYGLTPLNYLAK 246 SYFI VFK + +TP + ++ Sbjct: 384 KDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 50/99 (50%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMD 209 +V +++ D W VA +L +S + L+++L + S+ ++ + R+ A +L Sbjct: 215 AVRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDLAKGLLRSG 274 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + +VA CGY S S F F+ G++P Y A+ R Sbjct: 275 RHGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHR 313 >UniRef50_C1SI41 DNA-binding domain-containing protein, AraC-type n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI41_9BACT Length = 249 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 15/137 (10%) Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP----SLLKKKLKNE- 186 Q +LM + +S + C I DIQ + ++ + P + KK NE Sbjct: 107 QELLFNILMGLFLTSPECTKCSIQPEDIQKFHYIKNIIEENLHQPLSHRQIAKKAGINEF 166 Query: 187 --NTSYSQI--------VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 T + ++ V E R+ A ML K+++ VA GY++ S+FISVF+ +Y Sbjct: 167 KLKTGFKELFGKTVYGYVLEKRIENAKAMLETGTKSVSDVAWDIGYTNVSHFISVFRKYY 226 Query: 237 GLTPLNYLAKQRQKVMW 253 G+TP +L RQK + Sbjct: 227 GVTPGKFLGSVRQKKTY 243 >UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=Burkholderia RepID=Q390J5_BURS3 Length = 339 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 49/92 (53%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 +S+ RI++ D++H +L +A+ LC+S L+++L ++ SY ++ R + A +L Sbjct: 241 ESIERIMRRDLRHAPSLAEIAAQLCMSERTLRRRLADQGVSYQTVIDTIRRKRAFTLLSN 300 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 +I VA G+S F FK + G P Sbjct: 301 PRLSIEDVAHEVGFSDAHNFRRAFKRWTGHGP 332 >UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_9BACE Length = 1382 Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 17/147 (11%) Query: 117 LTRALLFTVLSNFLEQSRFIALLM----YILRSSVRDS-----------VCRIIQSDI-Q 160 + +LL + ++N LE + IA L+ ++ +S +++S + RII+ ++ Sbjct: 1234 FSASLLKSRVANLLEGRKKIASLISSSTHLKQSIIKESLNKIDNEFIERITRIIEENLMD 1293 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 ++ +A L +S S L +K+K S + + + R+R A Q+LL NI+++A Sbjct: 1294 EKIDVPTIAQELSMSYSSLYRKIKALTGMSTGEFIRKLRLRKAEQLLLSGKYNISEIAHQ 1353 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAK 246 G +S SYF FK YG++P Y+ + Sbjct: 1354 VGLNSVSYFRECFKEEYGMSPSEYIKQ 1380 >UniRef50_A1TJQ7 Transcriptional regulator, AraC family n=2 Tax=Acidovorax RepID=A1TJQ7_ACIAC Length = 321 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 61/104 (58%), Gaps = 4/104 (3%) Query: 144 RSSVRDSVCRIIQ---SDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 R S R ++ R+++ ++ L A + CLSP+ L +K E ++++++TE R+ Sbjct: 196 RGSRRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKKETGRTFTELLTERRL 255 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 A ++LL + I ++A+ CG++ +YF F+ ++GL+P ++ Sbjct: 256 ALAQELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDW 299 >UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V3C5_PSEA8 Length = 357 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 140 MYILRSSVRDSVCRI---IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 + +L + RD R+ ++ Q + NL VA+ L LS LK+ L + TS+ Q++ + Sbjct: 226 LALLDAGRRDICARVRLELERQEQRFPNLEEVAARLHLSSRSLKRHLHDAGTSFRQLLGQ 285 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 R R A+++L ++ ++A GYS + F FK + G P + A+ Sbjct: 286 ARQRQALRLLRRPEVSLQRIALYLGYSDPTNFTRAFKRWTGEPPSDTRAR 335 >UniRef50_A7M014 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7M014_BACOV Length = 1321 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 163 WNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 +N+ ++A + LS L +K+K+ S S + RM+ A +L NI+++A G Sbjct: 1231 FNVEMLAREVGLSRVQLHRKMKDITGVSTSVFIRNLRMKKAAALLQEGKLNISEIADAVG 1290 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + S + F +VFK FYG++P Y A R K Sbjct: 1291 FDSQANFATVFKKFYGVSPSEYAASIRNK 1319 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 48/99 (48%) Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQM 205 S + ++Q + L VA+ +S + L ++LK ENT + ++T RM YA+ + Sbjct: 156 SFEQKITELLQQAPWQDYQLDQVATHFSMSRATLIRRLKEENTQFRTLLTRVRMNYALSL 215 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 + + +A CGY S F F +G+TP Y+ Sbjct: 216 MQQGYRQQMDIAVRCGYQSQERFSQRFYKSFGITPSQYI 254 >UniRef50_B3CG99 Sensor protein n=4 Tax=Bacteroides RepID=B3CG99_9BACE Length = 1396 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 149 DSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQML 206 + V R+I ++ + + ++++ + +S L +KLK N + Q++ R++ A +L Sbjct: 1285 ERVMRVINENLSNPALTVEMISTEVGISRVHLHRKLKGLTNQTTQQLIRNLRLKQAASLL 1344 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 NIT+VA L G++ +YF + F+ YG++P Y+ + Sbjct: 1345 AGKRHNITEVATLTGFAHPTYFATAFREMYGMSPSEYMERH 1385 >UniRef50_B2TEU0 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=B2TEU0_BURPP Length = 363 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 11/119 (9%) Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCR----IIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 S+F+E+ A L Y+ SV D+ R +++ +++ N+ ++A + S L++ Sbjct: 239 SSFVERR---AALGYL---SVDDATVRHAVLLMEENLEAPLNIAVIAKMIGTSVRNLERA 292 Query: 183 LKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 +E N S ++ R+RYA ML+ + IT +A CG++ +++FI F+ YG+TP Sbjct: 293 FMSEMNASPNEFYRRMRLRYARWMLVNTARKITDIAYECGFADSAHFIRAFREAYGVTP 351 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Query: 149 DSVCRIIQSDIQHYWN---LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 D+V ++I QHY L+ V+ +L L+ L + K E S+S + RM A Q Sbjct: 378 DNVEKVIVILHQHYQEPLTLKEVSENLHLNVMYLGQLFKKETKKSFSAYLNHLRMEKAKQ 437 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +LL N+NI ++A GY++T+YF +FK G +P Y Sbjct: 438 LLLHSNQNINEIASEIGYNNTTYFSKLFKKIVGRSPKEY 476 >UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BG36_9RHOB Length = 349 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 43/76 (56%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A++L +S L+++L++E +S+++ CRM A +MLL + +++ GYS S Sbjct: 255 IAAALGMSRRTLRRRLEDEGQKFSRLLAGCRMEIAKRMLLAPGAQLHDISERLGYSEVSA 314 Query: 228 FISVFKAFYGLTPLNY 243 F F+ G TP + Sbjct: 315 FERAFRQREGATPSQF 330 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQ 204 S +R V R + Q + +AS + +SP L+++LK ENTS+ +I R A+ Sbjct: 292 SKIRALVGRDLS---QQMPDFEFIASQINVSPQTLRRRLKEENTSFQEIKDNMRRDAAIY 348 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 L +I ++A G++ S F FK + G+TP +Y Sbjct: 349 YLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDY 387 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 R+ V + IQ + +L+ LS + + K + + SQ V R+ YA Sbjct: 180 RNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYFKEHFHITLSQYVAYLRLEYA 239 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 Q+L + ++T+ A GY + SYFI FK YG++PL Y KQ Sbjct: 240 KQLLQDTDISVTEAAMRSGYQNISYFIRSFKKTYGVSPLKYRKKQ 284 >UniRef50_A3QFM4 Transcriptional regulator, AraC family n=1 Tax=Shewanella loihica PV-4 RepID=A3QFM4_SHELP Length = 337 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 55/102 (53%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQ 204 +S+ + V I+ D + L +A L +S L++ L + TSY ++V + R + A+ Sbjct: 235 TSLIEKVLAILNQDFPNNPKLESMALRLNMSDRTLRRHLASAGTSYQKLVDQVRCQTAIG 294 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +++ +K+I +A + G+ S+F FK + GL P ++ K Sbjct: 295 LIVQGDKSIVDIADIMGFGDVSHFRQSFKHWLGLPPGQFIRK 336 >UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6F6Z7_9GAMM Length = 354 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 42/74 (56%) Query: 167 IVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 +VA+ L +S L++KL+ E TSY +++ E R+ A Q L I ++A + G+S T Sbjct: 264 MVAAQLNMSERTLQRKLQQEQTSYQKLLDEARLSLAQQYLTKSKAGIDEIAIMLGFSETR 323 Query: 227 YFISVFKAFYGLTP 240 F FK + G TP Sbjct: 324 SFFRSFKLWTGQTP 337 >UniRef50_UPI0001C35655 two-component response regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35655 Length = 269 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNI 213 I S + +L ++ +L +S + L K E NT+ + VT+ RM+ A ++LL + + Sbjct: 173 IGSHLAGAASLNDISGALHVSKAYLSTLFKREMNTTVTDFVTKQRMKEAKKLLLETDMLV 232 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +++ GY S YFI VFK G+TPL Y K Sbjct: 233 SEIYLKVGYQSDKYFIKVFKELEGITPLAYRKK 265 >UniRef50_Q1YPA3 Transcriptional regulator, AraC family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPA3_9GAMM Length = 322 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A+ L +S L ++LK TSY +I R A+Q L+ + ++ +VA++ G++ + Sbjct: 242 MAAELGISSQTLHRRLKESATSYQKIKDNLRREVAIQKLVSERLSVERVAEIVGFTESRS 301 Query: 228 FISVFKAFYGLTPLNYLAKQ 247 F FK + GLTP Y ++ Sbjct: 302 FTRAFKHWTGLTPREYCKRE 321 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 17/144 (11%) Query: 114 EAELTRAL---LFTVLSNFLEQSRFIALLMYIL--------------RSSVRDSVCRIIQ 156 + +LTR L + + N L +SR LM +L + V + +I Sbjct: 141 DGDLTRTLQHLVEGITGNTLNESRLELRLMDMLLVLSERGYHFGVPPQPGVSTQLRALIS 200 Query: 157 SDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQV 216 + + +W + L +S + L+++L E T + ++ E RM++A+ ++ + ++ ++ Sbjct: 201 EEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRMQHAMMLVQTTSWSMQRL 260 Query: 217 AQLCGYSSTSYFISVFKAFYGLTP 240 A+ CGY S++ F FK +G +P Sbjct: 261 AEACGYKSSARFSERFKTRFGCSP 284 >UniRef50_Q2G532 Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G532_NOVAD Length = 342 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV-QMLLMDNKNITQVAQLCGYSSTS 226 +A + +S +++KL E +S+ Q++ ECRMR AV + + +I Q+A GY+ S Sbjct: 257 IAREIGMSSRTMRRKLAEEGSSFQQVLDECRMRQAVFEFRTRPDLSIAQIALRLGYAEHS 316 Query: 227 YFISVFKAFYGLTPLNYLAK 246 F F + G++P + A+ Sbjct: 317 NFTRAFHRWSGISPHAWRAR 336 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 16/124 (12%) Query: 136 IALLMYILR-SSVRDSVCRIIQSD-----------IQHYWN---LRIVASSLCLSPSLLK 180 I LL++I+R + ++V + I D +HY + L VA LS S L Sbjct: 148 IELLLFIIRCKNYEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLS 207 Query: 181 KKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 KK K + + + R++ A +LL NK+IT +A CG++ ++YF F+ G++ Sbjct: 208 KKFKTATGFGFKEYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGIS 267 Query: 240 PLNY 243 P Y Sbjct: 268 PHKY 271 >UniRef50_Q1YPI7 Transcriptional regulator, AraC family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPI7_9GAMM Length = 344 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 49/79 (62%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +AS + +S L+++L + T++ Q++ E R R A++ L + IT++A L GY+ Sbjct: 266 LASLMNISRRTLQRRLSDRGTNFLQVLQEVRSRMALRYLSDNRLGITEIAFLLGYADQGS 325 Query: 228 FISVFKAFYGLTPLNYLAK 246 F S FK+++G++P +Y K Sbjct: 326 FSSAFKSWHGMSPRDYRRK 344 >UniRef50_A3K7U5 Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7U5_9RHOB Length = 379 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 50/88 (56%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +L +A L ++P L+++L TS+S+I+ R+R A +L + ++Q+A GY+ Sbjct: 275 DLETLADILGMAPRTLRRQLGTFGTSFSEILNRERLRKAEMLLSTGSIKVSQLAAHLGYA 334 Query: 224 STSYFISVFKAFYGLTPLNYLAKQRQKV 251 + S F F+ + G TP+ L + R+ + Sbjct: 335 NQSAFSRAFREWTGETPMAALRRARRSI 362 >UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Y7_9BACL Length = 118 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 160 QHYWN---LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 QHY L+++A + P+ K+ K + S+ + RM+ A +L N I + Sbjct: 24 QHYAEPIQLQMIAERFFIHPNYFSKRFKEKYGESFVDYLNSIRMKEAAALLGETNLKIRE 83 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +++ G+ +YF SVF+ +YG TP Y +Q +K Sbjct: 84 ISERVGFEDAAYFSSVFRKWYGETPKQYRERQLKK 118 >UniRef50_A6LW09 Response regulator receiver protein n=2 Tax=Clostridium RepID=A6LW09_CLOB8 Length = 446 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLL 207 +SV + I+ +I+ L VAS+ LS + K ++S+ V +CR+ A ++L Sbjct: 342 ESVKQFIRENIETELELDKVASNFGLSVYYFSRTFKEVTGVNFSEYVNKCRIDVAKELLS 401 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 N+ +V GY+ +YF VFK + G++P N+ +K+ Sbjct: 402 TGEMNVKEVCYKVGYNDPNYFSKVFKKYEGVSPANFKGNMEEKIF 446 >UniRef50_Q82WF8 AraC type helix-turn-helix n=1 Tax=Nitrosomonas europaea RepID=Q82WF8_NITEU Length = 350 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 47/87 (54%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 NL A SL LSP L++ L+ ENTS+S I+ + R A +ML + I+ + L GY+ Sbjct: 258 NLEYFAVSLGLSPKKLQRLLQQENTSFSAILDKVRESLACEMLETTDVPISNICGLLGYT 317 Query: 224 STSYFISVFKAFYGLTPLNYLAKQRQK 250 + F FK + G+ P Y R+K Sbjct: 318 ALPAFNLAFKRWIGVAPSIYREFNRRK 344 >UniRef50_A9G936 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G936_SORC5 Length = 352 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%) Query: 165 LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 L +A+ L +SP L+++LK E TS S ++ R A + L I+++A L G+S Sbjct: 250 LPAIAARLRMSPRSLQRRLKEEGTSLSSLLDALRADLAARYLSESRDAISEIAFLLGFSE 309 Query: 225 TSYFISVFKAFYGLTPLNY 243 S F FK + G+TP Y Sbjct: 310 VSTFHRAFKRWTGVTPAAY 328 >UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W7_9GAMM Length = 339 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 137 ALLMYILRSSVRDSVCRIIQSDIQHYWNL-----RIVASSLCLSPSLLKKKLKNENTSYS 191 AL+ L+ +R S+ ++S I + +VAS L + L++ LK + TS+ Sbjct: 219 ALMEPQLQQVLRASLHHRVESQISQHLQAGNTTPDLVASDLNMGTRTLQRLLKEDGTSFK 278 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +I+ R +A + LL + I QVA GY F FKA++GL+P +Y+ ++ Sbjct: 279 EILKLLRQEHA-KNLLDTREPIAQVASRLGYDDPGTFSKSFKAWFGLSPSDYIENKK 334 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202 L +RD I ++ W R V LS + L+++L E TS Q++TE R+ + Sbjct: 178 LGEQIRDR----IAAEPARDWQSRDVEEQFALSGATLRRRLAAERTSLRQLLTEARLAHG 233 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 + +L + + VA GY S + F F YGL P + Sbjct: 234 MTLLYTTDLPLKTVAARAGYRSAASFSKRFAEQYGLAPTD 273 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 LT L +L++F+E++ + + L+ + + ++I + W L I++ + +S Sbjct: 182 LTEVLFIQLLNSFIEKNEHLTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGMSR 241 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 + L++K K S ++ RM A Q+L N ++ +A + G+S FK Sbjct: 242 ATLQRKFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDH 301 Query: 236 YGLTPLNYLAK 246 YG TP + K Sbjct: 302 YGDTPSQFRKK 312 >UniRef50_P68913 Uncharacterized HTH-type transcriptional regulator Rv1395/MT1440 n=15 Tax=Mycobacterium RepID=Y1395_MYCTU Length = 344 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 39/76 (51%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA L + P L+++L E TS+ ++ E R AV +L + QV+ GY+ S Sbjct: 265 VAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEVST 324 Query: 228 FISVFKAFYGLTPLNY 243 F FK +YG+ P Y Sbjct: 325 FSHAFKRWYGVAPSEY 340 >UniRef50_B1XIJ2 Two-component response regulator n=2 Tax=Synechococcus RepID=B1XIJ2_SYNP2 Length = 266 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 165 LRIVASSLCLSPSLLKKKLKNENTSYS--QIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 ++ +A + S S L ++ E T Y+ Q + RM A ++L NK I ++A+LCGY Sbjct: 182 IKAIAEEVGYSTSYLSNLVQKE-TGYTVKQWIIARRMLQARKLLKNTNKPIHKIAELCGY 240 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQ 247 YF + F+ F+G TPLN+ ++Q Sbjct: 241 HDAGYFTNQFRRFHGKTPLNWRSEQ 265 >UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VSF4_ALCBS Length = 338 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 45/93 (48%) Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 V RII + + VA L +S LK+KL+ TSY +++ R AV+ L Sbjct: 244 VRRIILGGGGRFPGVEEVAGELHMSSRTLKRKLQQLGTSYQEVLDGLRKGLAVEYLTQSE 303 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 K + ++A GYS S F F+ + +P +Y Sbjct: 304 KTVDEIAMTLGYSDASNFARAFRRWTARSPSDY 336 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 6/107 (5%) Query: 142 ILRSSVRDSVCRIIQSDIQH-----YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 +++ ++RD + + I+S++ + Y L ++A L +S LK+ L+ + T++ QIV + Sbjct: 240 LVKENIRD-LQKSIRSELLYNSSNGYPTLPMIAERLNMSERTLKRHLQAQGTTFLQIVAD 298 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 R A +ML +I +A + GY + FI FK +G TP Y Sbjct: 299 VRFTEAKKMLQHKQYSIQDIASIVGYEEATNFIRAFKKTFGETPSQY 345 >UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CTH9_VARPS Length = 313 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Query: 144 RSSVRDSVCRIIQSDIQHY---WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 RS+ D++ R+++ +H +L A++ LSP+ L LK + +++++VTE R+ Sbjct: 179 RSAGHDALQRVMRYVREHLAEEMSLNDAAAAAMLSPNYLAHLLKKQTQRTFTELVTERRL 238 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 A ++L+ N I +A+ CG+ YF F+ G+TP + Sbjct: 239 ERAKELLVTSNARIGDIARQCGFGDAVYFSRRFRLQSGVTPRQF 282 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 AL L++ L + +LL +S R V ++ + W+L ++ L +S S L Sbjct: 139 ALRRKELAHLLYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTL 198 Query: 180 KKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 +++L++EN + ++ R+ + + I +A CGY S S F FK +G+T Sbjct: 199 RRRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMT 258 Query: 240 P 240 P Sbjct: 259 P 259 >UniRef50_C0ZD41 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZD41_BREBN Length = 341 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 47/80 (58%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +++ VAS L +S L+++L +E+T++ Q++T+ R A + L +I +VA L GY Sbjct: 246 DIQAVASELGMSDRTLQRRLADESTTFKQLLTQARHEQAREYLADPKLDIKEVAFLLGYE 305 Query: 224 STSYFISVFKAFYGLTPLNY 243 + F F+ + G TP N+ Sbjct: 306 DQNSFYRAFRLWEGDTPSNW 325 >UniRef50_Q1N1T2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N1T2_9GAMM Length = 361 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%) Query: 165 LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 L +A+ L LSP L++ LKN SY + R R A++ + + N + ++A+ GY + Sbjct: 269 LERLANKLHLSPRSLRRHLKNVGVSYKALFETERKRQAIKQVQLGNIALDKLAEELGYQN 328 Query: 225 TSYFISVFKAFYGLTPLNY 243 TS F FK ++GL+P Y Sbjct: 329 TSSFSRAFKRWFGLSPQQY 347 >UniRef50_A9GXS9 Ornithine utilization regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GXS9_SORC5 Length = 347 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 112 PCEAELTRALLFT--VLSNFLEQ--SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI 167 P E EL R L L+ FLE+ S A L ++ D V ++ ++ +L Sbjct: 204 PAE-ELDRPLPHANEALAAFLERHMSAAAARLPGAAPPALSDRVRALLGERLREGADLGA 262 Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A+ L +SP L+++L +E TS ++ E R R LL + I +VA L GYS S Sbjct: 263 LAARLRMSPRTLQRRLGDEGTSVHALLDEVR-RGRAAALLDADMAIGEVAYLLGYSEPSA 321 Query: 228 FISVFKAFYGLTPLNYLAKQR 248 F F+ + G+TP + A+ R Sbjct: 322 FHRAFRRWTGVTPEAFRARTR 342 >UniRef50_B3C9G8 Sensor protein n=2 Tax=Bacteroides RepID=B3C9G8_9BACE Length = 1288 Score = 54.3 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 169 ASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 A + +S SLL KK+K S + + R+ A+++L IT+V++LCGYSS SY Sbjct: 1213 AMEMHVSGSLLYKKIKALTGQSPIEFIKSIRLNRALELLQSHKYTITEVSELCGYSSISY 1272 Query: 228 FISVFKAFYGLTP 240 F +VFK ++G +P Sbjct: 1273 FSTVFKKYFGKSP 1285 >UniRef50_C6CUY4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUY4_PAESJ Length = 541 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 148 RDSVCRIIQSDIQHYW---NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 R S+ R +Q I ++ +L +++ + L+PS L K K E S+ + RM + Sbjct: 436 RSSIIRKVQEFIHNHLEQASLHSISTHVYLNPSYLSKIYKTETGEGISEYLLRARMEKSA 495 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +L ++ I +++ + GY SYFI +FK +G+TP Y K Sbjct: 496 DLLAQTDEKIYEISVMLGYQKPSYFIQLFKKHFGITPQEYRNK 538 >UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BGF1_9BURK Length = 469 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%) Query: 161 HYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLC 220 + ++ +A SLC++ L++KL+ E TSYS ++T R A+ L +I +A Sbjct: 381 QFPDIDAIADSLCITSRTLRRKLEAEGTSYSALLTSVRKALAIDYLSTTTLSIDDIASTL 440 Query: 221 GYSSTSYFISVFKAFYGLTPLNYLAKQ 247 G+S F FK + G TP + K+ Sbjct: 441 GFSDAVGFRHAFKRWTGTTPSDVRRKR 467 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 S + + R IQ NL +A + LSP L K E +Y+ + RM +A Sbjct: 403 SRIVQEIKRYIQEHYAENINLNALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHAK 462 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + L+ + I +VA+L GY+S FI VFK G+TP Y Sbjct: 463 KYLMQFDLKIYEVAELTGYASPKQFIRVFKKEVGVTPGEY 502 >UniRef50_B9L6G8 Transcriptional regulator n=1 Tax=Nautilia profundicola AmH RepID=B9L6G8_NAUPA Length = 351 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 46/79 (58%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A L +S S +K+KLKNENT++ ++ R + A+ M+ N + +++ L GYS S Sbjct: 271 IAEKLNISVSTIKRKLKNENTTFKKVTETIRKKLALSMIKDKNISYEEMSYLLGYSEYSP 330 Query: 228 FISVFKAFYGLTPLNYLAK 246 F FK ++ +P +Y K Sbjct: 331 FFRAFKKWFKHSPSDYRTK 349 >UniRef50_UPI000197BA84 hypothetical protein BACCOPRO_03194 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197BA84 Length = 292 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Query: 141 YILRSSVRDSVCR----IIQSDIQHYWNLRIVASSLCLSPSLL-KKKLKNENTSYSQIVT 195 YI S D + I + Q+ L +A ++ ++PS L + K+ + +T Sbjct: 181 YINSDSTEDPIINKVHLFINKNYQNNIALEDIACNVGMNPSALCRYYKKHTGKRMFEYLT 240 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 E R+ YA ++L+ N NI+QVA CGY+S S+F FK G TP Y K Sbjct: 241 ELRISYATKLLINKNINISQVAYDCGYNSLSHFNHQFKQVTGYTPSEYAQK 291 >UniRef50_Q5ZTY8 Transcriptional regulator OruR, AraC family n=4 Tax=Legionella pneumophila RepID=Q5ZTY8_LEGPH Length = 337 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 46/81 (56%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +AS LC++ L++ L+ + +Y +++ E R + A LL +N ++T++ L G+ TS Sbjct: 255 IASRLCMTSRTLRRHLQRLDVTYQELLDEVREQKAKTFLLNNNISMTEICFLLGFQDTSN 314 Query: 228 FISVFKAFYGLTPLNYLAKQR 248 F FK + G+TP Y K Sbjct: 315 FSKAFKRWTGITPTEYREKHE 335 >UniRef50_D1N6W7 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6W7_9BACT Length = 290 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 166 RIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 R +A +P + ++L+ + S+ V R YA ++L + ITQ+A CG+ S Sbjct: 191 RALAVLAGRTPEHVARELRRFAGVTPSEAVNRARADYAARLLSGSDLTITQIAYQCGFGS 250 Query: 225 TSYFISVFKAFYGLTPLNYLAKQR 248 S F F+ FYG TPL Y R Sbjct: 251 LSGFFPAFRRFYGETPLEYRRTHR 274 >UniRef50_A7VPJ4 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPJ4_9CLOT Length = 264 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNI 213 I S Q W ++ +AS + LSPS ++ K + S + + RM A+QML++ + + Sbjct: 169 IYSSPQQAWTVKKMASFVNLSPSYVQSLYKKFFHISCVADLIKSRMDRAIQMLVVTDYPV 228 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++A LCGY S YF FKA G+TP Y K Sbjct: 229 NKIALLCGYESNIYFSRHFKAKIGMTPTEYRQK 261 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%) Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTS 189 L+ S ALL+ + + + +++ D + W +A L ++ S L+++L E Sbjct: 147 LQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKR 206 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + I+ + R+ A+ L N I +A GY+S S F + F YGLTP Sbjct: 207 FRDILDDVRLGQALLALQSGNTPIGDIASQSGYASPSRFTARFVRRYGLTP 257 >UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3X5_9BACT Length = 286 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 186 ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 E S + VT+ +MR AV++L N ++ +VA+ CG+ SYF VF+ YG++P + Sbjct: 223 EGKSPHEFVTDLKMRLAVRLLQTTNGSVKEVAENCGFEDASYFCKVFRNHYGVSPAGF 280 >UniRef50_Q2B9I5 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B9I5_9BACI Length = 520 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 WNL A SL + S L ++ E ++ + + + R+R A ++L+ + I ++A +CG Sbjct: 432 WNLSDCAESLGIHKSTLSRRFAAEKGLTFRERLHQIRIREAKRLLIETDLPIERIAAMCG 491 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQR 248 YS SYF S FK+ TP +Y K + Sbjct: 492 YSHPSYFSSKFKSIASSTPASYRRKTK 518 >UniRef50_C6LB63 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LB63_9FIRM Length = 517 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 160 QHYWN---LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 +HY + + ++A + S KN S+S +TE RM+ A + L+ + I + Sbjct: 423 KHYMDEITMEMIAEKYYFNASYFSTVFKNYFGKSFSGYMTELRMQKAKEFLISTDWKIKE 482 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +A GY +YFI FK FYG TP Y Sbjct: 483 IASKTGYRDANYFIRAFKKFYGYTPEEY 510 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 41/76 (53%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A + +SP L+++LK E TS+ IV++ + A+ +L N I Q+A GY Sbjct: 263 LARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNLPIQQIALELGYEDLPN 322 Query: 228 FISVFKAFYGLTPLNY 243 F FK + G TP +Y Sbjct: 323 FYRAFKRWTGKTPGDY 338 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 44/80 (55%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 N VA +L +S S LK+ L ENT + ++T R AV++LL ++ +A+ GYS Sbjct: 293 NQESVAQALNMSRSTLKRHLARENTHFQAVLTNIRKENAVRLLLGTTHSLEHIAEQLGYS 352 Query: 224 STSYFISVFKAFYGLTPLNY 243 + F F+ + G+TP + Sbjct: 353 DQTNFSHAFRQWSGMTPGRF 372 >UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2_BACV8 Length = 1346 Score = 53.9 bits (128), Expect = 5e-06, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 168 VASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 ++ ++C+S S L +K+K S ++ + + +M+YA ++LL NI++VA G +ST Sbjct: 1263 LSDAMCMSNSTLYRKMKALTGLSTNEYIRKIKMQYAERLLLEGKYNISEVAFKVGINSTV 1322 Query: 227 YFISVFKAFYGLTPLNYLAK 246 YF FK +G+ P +YL K Sbjct: 1323 YFRQCFKDEFGMAPSDYLKK 1342 >UniRef50_C6CWQ4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWQ4_PAESJ Length = 538 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNI 213 IQ L + A +PS +K+ S+S +TE R+R A ++L I Sbjct: 435 IQGHYAEDLTLEMAAEQFHFNPSYFSTLMKSRTGRSFSDHLTEARIRAAKELLAGGRFKI 494 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++A+ CGY T YF +FK GL+P Y Sbjct: 495 YEIAEQCGYRDTKYFTRIFKRQVGLSPEAY 524 >UniRef50_A3UQ73 Helix-turn-helix, Fis-type protein n=3 Tax=Vibrionaceae RepID=A3UQ73_VIBSP Length = 339 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 46/77 (59%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 NL VA++L +SP L +KLK + S+ ++ + R+ ++ +L ++ NIT VA G+S Sbjct: 258 NLDSVANNLHISPRTLNRKLKQQGVSFRRLFDKYRLELSMTLLNQNDGNITYVAHELGFS 317 Query: 224 STSYFISVFKAFYGLTP 240 +S F FK + G +P Sbjct: 318 DSSAFSRAFKNWTGHSP 334 >UniRef50_A6DLX0 Transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLX0_9BACT Length = 282 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 VA++ L+P+ + K++ S+S +T R+ A +L N+NI ++A++CGY TS Sbjct: 197 VATNFKLTPNYISHLFKSQTGMSFSHHLTTIRINQACYLLKKFNQNIDEIARVCGYHETS 256 Query: 227 YFISVFKAFYGLTPLNYLAKQ 247 YF VFK G TP Y K Sbjct: 257 YFCRVFKKIKGHTPSAYRLKH 277 >UniRef50_A9BZN3 Transcriptional regulator, AraC family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BZN3_DELAS Length = 338 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 43/76 (56%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VAS L L+ L+++L+ E+TSY Q++ E R A+Q L +++ +VA L G+ S Sbjct: 257 VASLLGLTDRTLQRRLQAEDTSYQQLLDETRRELALQYLGEPRRSLAEVADLLGFVDQSN 316 Query: 228 FISVFKAFYGLTPLNY 243 + ++G+ P Y Sbjct: 317 LFRACRRWFGMPPGQY 332 >UniRef50_A4CH85 Serine/threonine kinase n=3 Tax=Bacteroidetes RepID=A4CH85_9FLAO Length = 706 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 SLL+K K+ S SQ + + R++ ++ML N+T+V+ G+ STSYFI F+ Y Sbjct: 50 SLLRKVRKHTGLSASQFIRQVRLKQGMEMLRQTTLNVTEVSYRVGFGSTSYFIKCFREHY 109 Query: 237 GLTP 240 G P Sbjct: 110 GYPP 113 >UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH05_DESAA Length = 338 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 47/80 (58%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 ++ A S+ +SP L++ L+N+ TS+++I+ E R A ++ + ++T VA GYS Sbjct: 255 SIETTAQSMGISPRSLQRHLRNQGTSFTEILDETRKHLAENLIRYPHLSVTDVAFQLGYS 314 Query: 224 STSYFISVFKAFYGLTPLNY 243 +S F F+ ++G +P Y Sbjct: 315 DSSNFSRAFRRWFGKSPNMY 334 >UniRef50_A4XNX6 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XNX6_PSEMY Length = 345 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 43/80 (53%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +L +AS+L LSP L+++L+ S+SQ+V E R + + L + ++A L G+S Sbjct: 260 DLETIASALALSPRTLQRRLREAGLSFSQLVDETRQQLVLHYLRDPALELAEIAFLVGFS 319 Query: 224 STSYFISVFKAFYGLTPLNY 243 + F+ + G +P Y Sbjct: 320 EPGSLVRAFRRWTGGSPGEY 339 >UniRef50_D1CHN4 Transcriptional regulator, AraC family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CHN4_THET1 Length = 296 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 11/117 (9%) Query: 134 RFIALLMYILRSSVRDSVCRIIQ---SDIQHYWNLRIVASSLCLSPSLL----KKKLKNE 186 RF+A + R +V R++Q ++ W LR +A + L PS L K +L Sbjct: 169 RFVAEAI-AGRPKQHPAVSRVVQLLRAEADRDWTLRELAGEVALEPSYLVRLCKAQLGLP 227 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +Y + R+ A +LL + +ITQ+A G+ +YF F+A++GL P Y Sbjct: 228 PMAY---LARLRLERAAHLLLRTDLSITQIAAEVGWPDPNYFCRRFRAYFGLPPTLY 281 >UniRef50_UPI000178A004 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A004 Length = 514 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L ++A + LSP + K + E ++ +Q +T RM A+++L NK + ++A+ G Sbjct: 430 SLPVIAEQVGLSPHYISKLFREETGSTVNQYITRLRMEKAIELLRHSNKKVYEIAEEVGI 489 Query: 223 SSTSYFISVFKAFYGLTPLNY 243 S YF F+ + G++P +Y Sbjct: 490 PSYRYFTVTFRNWTGVSPTDY 510 >UniRef50_Q4KDB9 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KDB9_PSEF5 Length = 363 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 D V RI+ + + +A + SPS L+++L+ ++TSY Q++ E R A Q+L Sbjct: 253 DQVRRILNEQLHAVPDFDSLARQVHCSPSTLRRRLRAQDTSYQQLLDELRYARAQQLLGQ 312 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY--LAKQ 247 + I ++A+ G+ T+ F F+ + G+ P + LA Q Sbjct: 313 HSLPIYRIAEALGFKETASFRHAFQRWSGVAPGRFRQLAGQ 353 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Query: 164 NLRIVASSLC----LSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 L + SLC +S S L++KLK E + I + R+ + +L K+I +A + Sbjct: 178 ELDVTIESLCQRFAMSESTLRRKLKAEGITLQDIKDQVRLGQGLHLLQSTRKSIGMIANV 237 Query: 220 CGYSSTSYFISVFKAFYGLTP 240 CGY S S F FK +GLTP Sbjct: 238 CGYQSQSRFSERFKYRFGLTP 258 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQS-DIQHYWNLRIVASSLCLSPSLLKKKLK 184 L F+E+S L+ S+ V +I+++ D + L +A L ++ L +KLK Sbjct: 211 LDRFIEKSPRNLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAYTLSRKLK 270 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E +SY +I R AV ML N +++++ G++ F FK + GL+PL Y Sbjct: 271 AEGSSYQKIKDNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTGLSPLAY- 329 Query: 245 AKQRQ 249 KQ Q Sbjct: 330 RKQDQ 334 >UniRef50_B0NYF7 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NYF7_9CLOT Length = 320 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKN 212 I+ D+ ++ +A +S + LK + YS+++ E RM+ A +++L ++ Sbjct: 211 ILTEDLSKRYSAATLAKHFGISETSLKNYFQGVYGRGYSELLNEIRMKKAAELILKNSMK 270 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 I++++ G+++ S F FK +YG PL Y K Sbjct: 271 ISEISDAVGFATQSRFAKAFKNYYGAAPLEYKRK 304 >UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firmicutes RepID=A6TTD1_ALKMQ Length = 263 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 Y ++S +++++ R + + + +LR VA+ + L+ S L K + N ++S+ +T R+ Sbjct: 151 YRIQSPIKEAL-RFVDENGRGQLSLRDVANHVHLNSSYLSVLFKEQTNLTFSEYMTRRRL 209 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 A +L+ + I ++A GY + YFI +FK F G+TP Sbjct: 210 ENAKNLLMSTDLTIDEIAHEVGYQTAKYFIKLFKEFEGVTP 250 >UniRef50_Q1QJK3 Transcriptional regulator, AraC family n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QJK3_NITHX Length = 332 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 8/105 (7%) Query: 144 RSSVRDSVCRIIQSDIQHYW-----NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECR 198 R VR + R I+SDI + ++ ++A+ +SP ++K ++E+T++S V R Sbjct: 216 RGGVRAARLRAIKSDIGTHLCEPGLSIDMIAARHGISPRYVRKLFQDEHTTFSDFVLSLR 275 Query: 199 MRYAVQMLLMDNK---NITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + ++ ++LL I +A G+S SYF F+ Y +TP Sbjct: 276 LEWSRRLLLSPGHATCTIASIAHASGFSDLSYFNRTFRRRYAVTP 320 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 10/164 (6%) Query: 87 VIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSS 146 V A P + K+ A + L T L L Q R + L+++ Sbjct: 92 VYAGQPAAPAATGIQVVRGKEHKPEDVLALMKETLANTSLPEALRQHRLLEPLIWLRHIG 151 Query: 147 VRDS----------VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 V S V +I++D+ + W VAS +S + ++ L +++++ Sbjct: 152 VNLSKPDTDNPLSKVRSLIETDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLH 211 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 R+ + +L ++ I+ +A CG+++ S+F FK +G+ P Sbjct: 212 TRLEKGLTLLQSTHEPISNIALDCGFNTPSHFSEAFKKRFGIRP 255 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 10/127 (7%) Query: 132 QSRFIALLMYILRSSVR----------DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 + R + LL+++ + V+ + V R + SD W+ VA + +S +L++ Sbjct: 143 KHRMLELLLWLAQRDVKFILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRR 202 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 KL EN ++ + RM A+++L + I+ +A GY S+S F F+ +G P Sbjct: 203 KLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFAERFRKRFGFAPT 262 Query: 242 NYLAKQR 248 R Sbjct: 263 AIRGHHR 269 >UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=Vibrio cholerae RepID=TCPN_VIBC3 Length = 276 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 49/91 (53%) Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNI 213 +++SDI W + L + +LKK+L++ + +++ R+ Y++ ++ I Sbjct: 177 LVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKI 236 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 Q+A G++S SYF +VFK+ + P YL Sbjct: 237 KQIAYQSGFASVSYFSTVFKSTMNVAPSEYL 267 >UniRef50_C0BZ09 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BZ09_9CLOT Length = 248 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLL 207 + V I + +LR ++ + SPS L + + + + R+ Y+VQ+L Sbjct: 146 EPVAEYIMEHLAEDLSLRTLSEQVHFSPSYLSHLFHEKRGMTIRHFINQKRIEYSVQLLR 205 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +KNI ++A CG+S+ S+F VFK G TP+ + R Sbjct: 206 HSDKNIKEIASACGFSNISHFNRVFKLHTGKTPVELRKENR 246 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 + + I++ + ++ L +A + L+P+ L K E + + +T+ RM A ++L Sbjct: 407 ERIKNIVRDEYRNDIGLEDIAERVNLAPAYLSYLFKKETGANLVKYITDYRMEQARKLLE 466 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 I VA+ CGY + YF +FK +YG+TP Y K Sbjct: 467 EGELKIVLVAKACGYENQPYFNRLFKNYYGMTPRQYREK 505 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 40/69 (57%) Query: 172 LCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 L +S S L++ L +E S ++ CR+ A+ ++ + I QVA+ CGY+S S F + Sbjct: 187 LAMSESTLRRHLADEGHSLRELREHCRLERALALVQTSSLPIGQVAEACGYASASRFSAR 246 Query: 232 FKAFYGLTP 240 F+ +G TP Sbjct: 247 FRTRFGCTP 255 >UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U8F0_PHYPA Length = 244 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 47/83 (56%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +++ VA L +S L+++L ENTS+ ++T+ R A + L + +I +VA L GY Sbjct: 65 DIQAVARELGMSDRTLQRRLTEENTSFKHLLTQARHEQAREYLADPSLDIKEVAFLVGYE 124 Query: 224 STSYFISVFKAFYGLTPLNYLAK 246 + F F+ + G TP ++ A+ Sbjct: 125 DQNSFYRAFRLWEGNTPSHWRAE 147 >UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1T3_9CLOT Length = 361 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 163 WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 + L+ +A +L +SP+ L + K E T + + + E RM A +L ++ I +VA CG Sbjct: 275 FTLQTLAETLMVSPNYLSARFKEETGTGFVRFLNEKRMERAKGLLADVSRKIYEVACQCG 334 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAK 246 YF +FK + G+TP Y K Sbjct: 335 IEDVRYFTRLFKEYAGMTPKEYRDK 359 >UniRef50_Q4BYL1 Helix-turn-helix, Fis-type n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BYL1_CROWT Length = 330 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 143 LRSSVRD---SVCRIIQS-DIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECR 198 L + RD S+ ++IQS +Y NL+ VA +S L+++LK SY++I+ + + Sbjct: 223 LSTPARDFVGSLRQVIQSLSSNNYPNLKEVADITGMSSRTLQRRLKEAEISYTEIINQIQ 282 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 A +L N + ++++ GYS+ +F FK + G+TP Sbjct: 283 FELAKTLLKESNLTLREISEALGYSTQGHFSRAFKRWTGITP 324 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 140 MYILRSSVRDSVCRIIQSDIQH----YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVT 195 +++ R +V DS + ++ ++ + +L+ VA L LS L+++L E TS+ ++ Sbjct: 283 LFLKRKNV-DSAAKNVKEELYDEALGFLSLKQVAERLHLSERTLQRQLAKEQTSFQLLIA 341 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 E R + A +L + +I Q+A+ GY+ S+F FK + +TP Y +R K + Sbjct: 342 EVRRKQAEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPKFYREVERYKTI 398 >UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PMQ7_CHIPD Length = 331 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +A++ +SP L++KLK E SY + E R A+ L + + ++ + GY+ S Sbjct: 253 IAANFNVSPRTLQRKLKEEGISYQDVADEVRKSLAIHYLEEGDYPVKTISYMLGYNELSA 312 Query: 228 FISVFKAFYGLTPLNY 243 F FK + G TP++Y Sbjct: 313 FTRAFKRWTGKTPVSY 328 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 12/109 (11%) Query: 149 DSVCRIIQSDIQHYWNLRI----VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 D ++IQ ++Y +L I +A L ++P+ L K+E ++S +T CR+ A Sbjct: 264 DEAIKLIQ---ENYSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIEKAK 320 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 ++L I +VA+ GY+ YF VFK G TP Y R+K++ Sbjct: 321 ELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEY----REKIL 365 >UniRef50_C6D1I5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1I5_PAESJ Length = 298 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 L++ +R S+ +Q + + +WN R +A+S+ +S S + + S S V R+ Y Sbjct: 188 LQAGLR-SIVENMQRNPEKHWNNRDIAASIGISESHFYRLFRQSFGQSPSSFVERKRVEY 246 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A Q+L+ + IT +A + ++ +F +VFK G+TP + A + Sbjct: 247 AAQLLMHSDAPITSLALTLDFKTSQHFSTVFKKVTGITPSQWRAAHHK 294 >UniRef50_D0S8B4 HTH-type transcriptional regulator n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8B4_ACIJO Length = 339 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 171 SLCLS--PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 +LC+ P L++ LK + TSY I+ R + A++ML N N+T +A GY+ S F Sbjct: 256 ALCMGMHPKKLQRALKMQGTSYRDILENVRKKEALRMLDAGNVNLTDIALQLGYAELSIF 315 Query: 229 ISVFKAFYGLTPLNYLAKQRQKVM 252 FK+++G+ P K R ++ Sbjct: 316 SRNFKSWFGVPPTELRDKSRSHIV 339 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L VA+ L ++PS + K E ++ + VT+ ++ A ++L N ++++ ++ GY Sbjct: 451 SLEEVAAHLHMNPSYFSRFFKKETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEMLGY 510 Query: 223 SSTSYFISVFKAFYGLTPLNY 243 + SYFI FKA GLTP Y Sbjct: 511 DNQSYFIKTFKAQTGLTPTEY 531 >UniRef50_C6VNG3 Response regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNG3_LACPJ Length = 486 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 ++ +II+ +L VAS L L+ L + K E S++Q + + R+ AV +L Sbjct: 384 AMRQIIKKRYPEQLSLAAVASELHLNAVYLGQLFKQEVGRSFAQFLNDYRVDVAVDLLRD 443 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + +I Q+A+ GY ++SYF +FK G++P +Y Sbjct: 444 SDLDIGQIAEAVGYQNSSYFYKLFKKQTGMSPGDY 478 >UniRef50_C4G3Y7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G3Y7_ABIDE Length = 527 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 +A+ L + S L++ K E N + +T+ RM A ++L+ D ++ ++++ G++ +S Sbjct: 448 IAAGLYVDSSYLRRTFKKEFNMKITDFLTQIRMEKARELLVQDRYKLSDISEMVGFNDSS 507 Query: 227 YFISVFKAFYGLTPLNY 243 Y VFK ++G +P Y Sbjct: 508 YLSKVFKKYFGKSPSEY 524 >UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36481 Length = 293 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%) Query: 154 IIQSDIQHY---WNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMD 209 IIQ ++HY + L +A + S L + K N + ++ + R+ +A MLL + Sbjct: 184 IIQYIMEHYSEVYGLEDLAGIFYMDKSYLSRIFKEVTNFTVNEFINCQRIGHARDMLLDE 243 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + ++ +++Q GY SYF VFK + G++PL Y +R+K Sbjct: 244 SLSMEEISQKLGYERLSYFDRVFKKYVGMSPLQYRKSKRKK 284 >UniRef50_D1PFT7 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PFT7_9BACT Length = 1334 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%) Query: 144 RSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRY 201 + + + V ++I +I ++ ++A + LS L +++K N + + R++Y Sbjct: 1226 KDQLMEQVMKVINDNIGNEDLSVDMIAREVGLSRVHLHRRMKELTNQTPHAFIRNTRLQY 1285 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++L NK I+ + CG+S+ + F ++FK FYG +P +Y+ R+ Sbjct: 1286 AEKLLSHSNKTISDIMFSCGFSNPASFSTMFKNFYGSSPRDYMQAHRK 1333 >UniRef50_UPI0001BC85BF ATP-binding region ATPase domain protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC85BF Length = 1355 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 17/120 (14%) Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI--VASSLCLSPSLLKKKLKN-ENT 188 Q F+ LM ++R V D NL + + L +S S +K+K + Sbjct: 1249 QDSFMQQLMELIRERVHDP-------------NLSVNDLHEELGMSRSQFFRKIKAVSDV 1295 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 S ++++ RM+ A + L +++VA GYS SYF VFK+ Y + P NYL KQR Sbjct: 1296 SPNKLILNVRMKLAAEKLATGKYTVSEVAYDVGYSDPSYFSKVFKSTYNIAPANYL-KQR 1354 >UniRef50_Q16E45 Transcriptional regulator, AraC family, putative n=8 Tax=Rhodobacterales RepID=Q16E45_ROSDO Length = 364 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 8/98 (8%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK---KKLKNEN-TSYSQIVTECRMRYA 202 V D++ RI D+ + ++ VA +L +SP L+ KK +N T+Y + + RM+ A Sbjct: 250 VSDAI-RIFAEDLSNPVSVAGVAKALNVSPRHLERSFKKAAGQNPTTYFRWL---RMQAA 305 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Q++L N I+ VA GY+ST +FI ++A YGL+P Sbjct: 306 RQIVLYTNDAISDVAAAVGYASTKHFIRHYRAEYGLSP 343 >UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 Tax=Vibrio RepID=C9NYZ8_9VIBR Length = 261 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 46/80 (57%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +L VA +S + L +KLK E + Y Q++ + R+ +A+Q++ + Q+AQ+CGY Sbjct: 174 SLEGVADHFGMSRATLIRKLKQEGSQYRQLLAQVRLSHALQLMQKHQYDGYQLAQMCGYQ 233 Query: 224 STSYFISVFKAFYGLTPLNY 243 S F F+ +G+TP Y Sbjct: 234 SEERFRQRFRERFGVTPREY 253 >UniRef50_C1A7J5 AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J5_GEMAT Length = 346 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNK-NITQVAQLCGY 222 N+ VA L +S L ++L+ E+TS+S IV R R ++LL D+ + +QVA L G+ Sbjct: 255 NIGDVAKRLAMSARTLHRRLQAESTSFSAIVESLR-RERAELLLADSTMSASQVAMLLGF 313 Query: 223 SSTSYFISVFKAFYGLTP 240 + + F F+ + G+TP Sbjct: 314 AEPATFFRAFRRWTGMTP 331 >UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casseliflavus RepID=C9ABT0_ENTCA Length = 469 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 149 DSVCRIIQSDIQHYWN---LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 D + +IQ +HY L+ + + + L KK + E +Y + E RM AV+ Sbjct: 367 DIIAELIQYTKKHYQEDLTLKKIGERFNYNSAYLGKKFRKETGKNYLAFLDEVRMEKAVE 426 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 +L N + +VA+L GYS+ YF FK ++ ++P Sbjct: 427 ILRHSNLMVYEVAELVGYSNVDYFYKKFKQYHQVSP 462 >UniRef50_B9XJ53 Transcriptional regulator, AraC family n=1 Tax=bacterium Ellin514 RepID=B9XJ53_9BACT Length = 338 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 ++ +VA L +S L++++ +E ++ Q+V E R A Q L + I + A L GY Sbjct: 250 DILLVAKELGMSARTLQRRITDEGATFRQLVLEARQELARQYLTQSSIEINEAAYLLGYD 309 Query: 224 STSYFISVFKAFYGLTPLNYLAKQR 248 + F FK + G TP ++ + +R Sbjct: 310 DANSFYRAFKTWEGTTPGHWRSLKR 334 >UniRef50_C7H1K1 DNA-binding response regulator n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1K1_9FIRM Length = 518 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 157 SDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 SD+Q ++L VA+ L +SP+ L++ K ++++ +TE RM+ A ++L ++ I + Sbjct: 425 SDLQ--FSLDDVAAELYISPNYLRQLFKQASGQTFTEHLTEMRMKEAQRLLDDESLKIYE 482 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNY 243 VA+ GY+ + YF +K ++ +TP +Y Sbjct: 483 VAERTGYADSRYFSVCYKKYWHITPTDY 510 >UniRef50_C6D094 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D094_PAESJ Length = 289 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 164 NLRI--VASSLCLSPSLLKKK-LKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLC 220 NLRI +A + +SPS L+K LK+ Q + R R A L+ + I QVA+LC Sbjct: 190 NLRIEQLAKTYSISPSYLRKVFLKHTGMGPKQYLDHIRNRQACDYLVFTDYPINQVAKLC 249 Query: 221 GYSSTSYFISVFKAFYGLTPLNYLAKQR 248 GY +F +FK G++P +Y +R Sbjct: 250 GYYEEYHFSKMFKQHNGMSPSHYRITKR 277 >UniRef50_C4FYZ2 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYZ2_ABIDE Length = 535 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 12/95 (12%) Query: 157 SDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQI--VTECRMRYAVQMLLMDNKNIT 214 +D+ +NL I S+ L KKK TS S I +TE RM+ A + L +N+ Sbjct: 449 NDVAERYNLNINYFSV-----LFKKK-----TSRSAINFLTELRMKAAKEYLKNTEENVA 498 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +++ GY T YF VFK G+TPL Y ++R+ Sbjct: 499 DISKKVGYEDTQYFFRVFKKSEGITPLMYRKRERK 533 >UniRef50_UPI0001C36E10 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36E10 Length = 249 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 A+ L +SP+ L + K+E +S+ V + A ++L + T+++ L G+SS S Sbjct: 160 AANYLDISPAYLSRLFKSETGVPFSEYVNRKKAEEAANLMLYSEYSDTEISTLFGFSSQS 219 Query: 227 YFISVFKAFYGLTPLNY 243 YFI VF+ F G+TP Y Sbjct: 220 YFIKVFRKFIGVTPKEY 236 >UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYS4_9BACL Length = 527 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L+ VA+ + L PS L + K E +++ VT RMR A+++L + ++++A L GY Sbjct: 435 SLQQVAAYVHLHPSHLSELFKKETGSTFGYYVTALRMRRAMELLAVSPAKVSEIAGLTGY 494 Query: 223 SSTSYFISVFKAFYGLTPLNY 243 YF +FK G TP + Sbjct: 495 EDVKYFSRLFKKHTGKTPSEF 515 >UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC3_DESAD Length = 293 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%) Query: 135 FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQI 193 F++ L+ R+S R + +++ +L VA S S K++ K NT+ ++ Sbjct: 174 FVSFLV-ACRNSSRGDLSAVMERYFNKNISLETVAELSGRSLSSFKREFKKTFNTTPARW 232 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + E RM +A Q+L K+IT+++ GY S S+F ++F+ YG+TP Y A+ Sbjct: 233 IRERRMSWAEQLLRNSAKSITEISYESGYESLSHFSTLFRKNYGVTPREYRAE 285 >UniRef50_UPI0001788C2F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C2F Length = 532 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLL 207 +S R I+ + +L +A P+ + K S+ Q VTE RM++AV++L Sbjct: 422 ESAKRYIEENYMQELSLTSLAEQYNYHPTYFSEMFKEGAGVSFIQYVTEVRMKHAVRLLQ 481 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 + +A+L G+SS YF S FK + +P + Q +K+ Sbjct: 482 ETRLTVWDIAELTGFSSPGYFSSKFKKMFNQSPSEFRLSQSEKI 525 >UniRef50_D2QBS1 Response regulator receiver sensor hybrid histidine kinase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QBS1_9SPHI Length = 668 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 7/107 (6%) Query: 145 SSVRDSVCRIIQSDIQ-----HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECR 198 SV+DS + + I+ + + +A + +S L +KL N + + + R Sbjct: 551 ESVKDSFVHALNNLIEARLDDSTFGVDELAKEVGMSRRTLHRKLTALVNMPVAVFIRQYR 610 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ AVQ + + N N++Q A + GY S ++F +VFK F+G TP +YL+ Sbjct: 611 LKRAVQFMRLGN-NVSQAAYMVGYESPAHFSTVFKEFFGRTPTDYLS 656 >UniRef50_Q3KCK3 Putative transcriptional Regulator, AraC family n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCK3_PSEPF Length = 350 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 44/76 (57%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 VA + ++P L++ L ENTS+ Q++ E R + A + L + ++ QVA L GY+ S Sbjct: 254 VADCMAVTPRSLQRHLAEENTSFQQLLDETRQQLARKYLQVPTISLPQVAHLLGYADVST 313 Query: 228 FISVFKAFYGLTPLNY 243 F F ++G++ L + Sbjct: 314 FSRAFHRWFGVSVLEW 329 >UniRef50_C5ERJ4 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERJ4_9FIRM Length = 538 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 +A SLC+SPS L K + Q +T RM A ++LL ++ +A++ GY Sbjct: 451 IAESLCVSPSYLSGIFKKTMGVTMVQYLTMVRMEGARELLLESEYDVKDIAEMVGYHDEY 510 Query: 227 YFISVFKAFYGLTPL 241 YF FK YGL+P+ Sbjct: 511 YFSRCFKRQYGLSPM 525 >UniRef50_C6VYN6 Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VYN6_DYAFD Length = 325 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 VA LS +++ + E NTS ++V E RM +A Q+LL ++ VA++ GY++ S Sbjct: 243 VAKHSPLSEHQIREGFRREYNTSVYELVHEKRMLHARQLLLDAGMSVEAVAEVAGYTTAS 302 Query: 227 YFISVFKAFYGLTP 240 FI FK +G+TP Sbjct: 303 NFIQAFKRKFGVTP 316 >UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUA5_9GAMM Length = 354 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 AS L +SP L ++L E TS+ Q+ + R AVQ + D +I +A + G+ S Sbjct: 267 AASQLNMSPRTLHRRLTAEGTSFQQLKDDLRRELAVQYMHRDELSIDAIAAVMGFQDNSA 326 Query: 228 FISVFKAFYGLTPLNYLAK-QRQK 250 F FK + G++P + + QR++ Sbjct: 327 FYRSFKKWTGISPGKFREQLQRER 350 >UniRef50_A6EFE7 Transcriptional regulator, AraC family protein n=2 Tax=Bacteroidetes RepID=A6EFE7_9SPHI Length = 268 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDNKN 212 ++ D +W+L +A+ L + P L + K N + + +++ AV ML ++ Sbjct: 173 LLHDDPARHWSLEALAAELSIHPVHLSRDFSKYFNCNLGEYQRMLKVQKAVSMLPDKQRS 232 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +T +A CG++ S+FI FKA Y +TPL + Sbjct: 233 LTDIAVTCGFADQSHFIRSFKALYHVTPLTF 263 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 346 4e-94 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 301 1e-80 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 197 3e-49 UniRef50_A8U8U9 Putative uncharacterized protein n=1 Tax=Carnoba... 180 3e-44 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 172 7e-42 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 167 4e-40 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 162 1e-38 UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salm... 146 6e-34 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 140 5e-32 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 137 3e-31 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 137 5e-31 UniRef50_A4XMG0 Two component transcriptional regulator, AraC fa... 136 8e-31 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 134 2e-30 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 134 3e-30 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 133 4e-30 UniRef50_B8KT68 Transcriptional regulator, AraC family n=1 Tax=g... 131 2e-29 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 131 2e-29 UniRef50_UPI0001973B3B response regulator receiver protein n=1 T... 130 5e-29 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 130 6e-29 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 129 7e-29 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 129 9e-29 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 129 9e-29 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 128 1e-28 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 128 1e-28 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 128 2e-28 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 128 2e-28 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 128 2e-28 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 127 2e-28 UniRef50_C2D366 Putative uncharacterized protein n=1 Tax=Lactoba... 127 3e-28 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 126 6e-28 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 126 6e-28 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 126 9e-28 UniRef50_D2LZT6 Two component transcriptional regulator, AraC fa... 125 1e-27 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 125 1e-27 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 125 1e-27 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 125 2e-27 UniRef50_C6LB63 Putative response regulator receiver domain prot... 125 2e-27 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 125 2e-27 UniRef50_UPI0001788C2F two component transcriptional regulator, ... 124 2e-27 UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostri... 124 2e-27 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 124 3e-27 UniRef50_UPI0001C3522D two-component system, response regulator ... 123 5e-27 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 122 8e-27 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 122 1e-26 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 122 1e-26 UniRef50_C0D3A6 Putative uncharacterized protein n=1 Tax=Clostri... 122 1e-26 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 121 2e-26 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 121 2e-26 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 121 2e-26 UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein ... 121 2e-26 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 121 2e-26 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 121 2e-26 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 121 2e-26 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 121 3e-26 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 121 3e-26 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 121 3e-26 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 121 3e-26 UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. ora... 120 3e-26 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 120 3e-26 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 120 4e-26 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 120 4e-26 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 120 5e-26 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 120 5e-26 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 120 5e-26 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 120 5e-26 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 120 5e-26 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 120 5e-26 UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Pae... 120 6e-26 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 120 6e-26 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 119 8e-26 UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=B... 119 8e-26 UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecali... 119 9e-26 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 119 1e-25 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 119 1e-25 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 119 1e-25 UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecali... 119 1e-25 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 118 1e-25 UniRef50_UPI0001789612 two component transcriptional regulator, ... 118 1e-25 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 118 1e-25 UniRef50_UPI0001788EC5 two component transcriptional regulator, ... 118 1e-25 UniRef50_Q0VP86 Transcriptional regulator, AraC family n=2 Tax=A... 118 1e-25 UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=B... 118 1e-25 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 118 2e-25 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 118 2e-25 UniRef50_B7ACV0 Sensor protein n=1 Tax=Bacteroides eggerthii DSM... 118 2e-25 UniRef50_UPI0001C35C03 two component transcriptional regulator, ... 118 2e-25 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 118 2e-25 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 118 2e-25 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 118 2e-25 UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryante... 118 2e-25 UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=B... 118 2e-25 UniRef50_C6D8S9 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_... 118 2e-25 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 118 3e-25 UniRef50_A9U743 Predicted protein n=1 Tax=Physcomitrella patens ... 117 3e-25 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 117 3e-25 UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_... 117 3e-25 UniRef50_A9KJM4 Two component transcriptional regulator, AraC fa... 117 4e-25 UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=B... 117 4e-25 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 117 4e-25 UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostri... 117 4e-25 UniRef50_UPI0001851370 two component AraC family transcriptional... 117 4e-25 UniRef50_C4FY31 Putative uncharacterized protein n=1 Tax=Catonel... 117 5e-25 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 117 5e-25 UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=... 117 5e-25 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 117 5e-25 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 117 5e-25 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 116 6e-25 UniRef50_A9U895 Predicted protein (Fragment) n=1 Tax=Physcomitre... 116 7e-25 UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=C... 116 7e-25 UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=C... 116 8e-25 UniRef50_B2I366 AraC-type DNA-binding domain-containing protein ... 116 9e-25 UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=C... 115 1e-24 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 115 1e-24 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 115 1e-24 UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family)... 115 1e-24 UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=... 115 1e-24 UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=R... 115 1e-24 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 115 1e-24 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 115 1e-24 UniRef50_UPI0001789620 two component transcriptional regulator, ... 115 1e-24 UniRef50_A6LW09 Response regulator receiver protein n=2 Tax=Clos... 115 1e-24 UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=m... 115 1e-24 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 115 2e-24 UniRef50_A4XMF1 Two component transcriptional regulator, AraC fa... 115 2e-24 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 115 2e-24 UniRef50_C7H4C8 Two Component Transcriptional Regulator, AraC fa... 115 2e-24 UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=A... 115 2e-24 UniRef50_UPI0001C355CA AraC family regulatory protein n=1 Tax=Cl... 115 2e-24 UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=S... 115 2e-24 UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=G... 115 2e-24 UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=En... 115 2e-24 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 115 2e-24 UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Ta... 115 2e-24 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 115 2e-24 UniRef50_UPI00016A75A2 transcriptional regulator, AraC family pr... 114 2e-24 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 114 2e-24 UniRef50_C6VNG3 Response regulator n=3 Tax=Lactobacillus plantar... 114 3e-24 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 114 3e-24 UniRef50_C6CTB8 Two component transcriptional regulator, AraC fa... 114 3e-24 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 114 3e-24 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 114 3e-24 UniRef50_A4XMI3 Two component transcriptional regulator, AraC fa... 114 3e-24 UniRef50_C1DHF9 Transcription activator in PHB biosynthesis, Ara... 114 3e-24 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 114 3e-24 UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2... 114 4e-24 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 113 4e-24 UniRef50_C6D789 Two component transcriptional regulator, AraC fa... 113 4e-24 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 113 4e-24 UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium R... 113 4e-24 Sequences not found previously or not previously below threshold: UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 148 2e-34 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 127 4e-28 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 126 7e-28 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 125 1e-27 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 125 1e-27 UniRef50_UPI0001C36527 two-component system, response regulator ... 125 2e-27 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 125 2e-27 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 123 4e-27 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 123 6e-27 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 123 7e-27 UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonel... 122 1e-26 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 122 1e-26 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 120 3e-26 UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limno... 120 3e-26 UniRef50_UPI0001C36195 two component transcriptional regulator, ... 120 3e-26 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 120 4e-26 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 120 4e-26 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 120 4e-26 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 120 5e-26 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 120 6e-26 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 119 7e-26 UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicu... 119 8e-26 UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family)... 119 8e-26 UniRef50_C6D127 Two component transcriptional regulator, AraC fa... 119 9e-26 UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillu... 118 1e-25 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 118 1e-25 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=M... 118 1e-25 UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerot... 118 2e-25 UniRef50_Q1LEQ7 Transcriptional regulator, AraC family n=6 Tax=B... 118 2e-25 UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=m... 118 2e-25 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_C6JDJ0 Two component transcriptional regulator n=1 Tax=... 117 3e-25 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 117 3e-25 UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=R... 117 3e-25 UniRef50_C0YRY4 AraC family transcriptional regulator n=1 Tax=Ch... 117 4e-25 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 117 4e-25 UniRef50_C6CZ56 Two component transcriptional regulator, AraC fa... 117 4e-25 UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vi... 117 4e-25 UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostri... 117 4e-25 UniRef50_A8S4U5 Putative uncharacterized protein n=1 Tax=Clostri... 117 5e-25 UniRef50_B3QHQ0 Transcriptional regulator, AraC family n=4 Tax=R... 117 5e-25 UniRef50_Q1GLT5 Transcriptional regulator, AraC family n=1 Tax=R... 117 5e-25 UniRef50_B9MLQ2 Two component transcriptional regulator, AraC fa... 117 6e-25 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 116 6e-25 UniRef50_Q88GH1 Transcriptional regulator, AraC family n=6 Tax=P... 116 6e-25 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 116 6e-25 UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminoc... 116 7e-25 UniRef50_UPI0001C36936 two component transcriptional regulator, ... 116 7e-25 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 116 7e-25 UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=C... 116 7e-25 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 116 7e-25 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 116 7e-25 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 116 8e-25 UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=... 116 8e-25 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 116 9e-25 UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=P... 116 9e-25 UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32... 115 1e-24 UniRef50_UPI00016C020E hypothetical protein Epulo_10707 n=1 Tax=... 115 1e-24 UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein ... 115 1e-24 UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and... 115 1e-24 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 115 1e-24 UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=R... 115 1e-24 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 115 1e-24 UniRef50_B6FJW1 Putative uncharacterized protein n=1 Tax=Clostri... 115 1e-24 UniRef50_A4W2Y8 AraC-type DNA-binding domain-containing protein ... 115 1e-24 UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostri... 115 1e-24 UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=P... 115 1e-24 UniRef50_UPI0001788A43 two component transcriptional regulator, ... 115 1e-24 UniRef50_A1U5N3 Transcriptional regulator, AraC family n=2 Tax=G... 115 2e-24 UniRef50_C4Z3B2 Two-component system, response regulator YesN n=... 115 2e-24 UniRef50_A3WY00 Transcriptional regulator, AraC family protein n... 115 2e-24 UniRef50_UPI0001787EAA two component transcriptional regulator, ... 115 2e-24 UniRef50_C6IZZ6 Transcriptional regulator n=2 Tax=Paenibacillus ... 115 2e-24 UniRef50_C6CVW8 Two component transcriptional regulator, AraC fa... 115 2e-24 UniRef50_C5EWE8 Response regulator receiver n=1 Tax=Clostridiale... 115 2e-24 UniRef50_B7DU32 Transcriptional regulator, AraC family n=1 Tax=A... 114 2e-24 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 114 2e-24 UniRef50_C0D596 Putative uncharacterized protein n=2 Tax=Clostri... 114 2e-24 UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=... 114 3e-24 UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=... 114 3e-24 UniRef50_Q21KB5 Transcriptional regulator, AraC family with amid... 114 3e-24 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 114 3e-24 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 114 3e-24 UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Ta... 114 3e-24 UniRef50_D1PII7 Transcriptional regulator, AraC family n=1 Tax=S... 114 3e-24 UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostri... 114 3e-24 UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostri... 114 3e-24 UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=V... 114 3e-24 UniRef50_C6XSX1 Sensor protein n=1 Tax=Pedobacter heparinus DSM ... 114 4e-24 UniRef50_A1HMP5 Two component transcriptional regulator, AraC fa... 114 4e-24 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 114 4e-24 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 114 4e-24 UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantell... 114 4e-24 UniRef50_UPI0001C36345 two-component system, response regulator ... 113 4e-24 UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 T... 113 4e-24 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 346 bits (887), Expect = 4e-94, Method: Composition-based stats. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR Sbjct: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA Sbjct: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK Sbjct: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP Sbjct: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Query: 241 LNYLAKQRQKVMW 253 LNYLAKQRQKVMW Sbjct: 241 LNYLAKQRQKVMW 253 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 143/252 (56%), Positives = 192/252 (76%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 M++ S +PC+V+LTEK+V + VN +L N++A C NN+I++S+LN+ L+ HI+ Sbjct: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 +II DYL FLNK+L+ + W R ATP++ TP+VFR+AA HS E E TRA Sbjct: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LLFTVLS FL+ +F++L+MY+LR+ V DSV +II+SDI WNL +VAS LCLSPSLLK Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KKLK+ENTSYSQI+T CRMRYAV L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 241 LNYLAKQRQKVM 252 L+Y+++ R++ + Sbjct: 241 LHYVSQHRERTV 252 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 76/196 (38%), Positives = 124/196 (63%) Query: 56 THINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEA 115 ++R+ ++ +L L + + ++ + ++ +R VF+ A S+ + R E Sbjct: 52 VLVSRDTLSLFLPMLKEEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEM 111 Query: 116 ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS 175 RAL+F +LS FLE ++FI LL+ +L+ ++R VC +I ++I H W L +AS L +S Sbjct: 112 LRKRALIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMS 171 Query: 176 PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 PSLLKKKL+ E TSYSQ++TECRM+ A+Q++++ +I +VA CGY S SYFI VF+ + Sbjct: 172 PSLLKKKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNY 231 Query: 236 YGLTPLNYLAKQRQKV 251 YG+TP Y + Q++ Sbjct: 232 YGMTPTEYQERSAQEL 247 >UniRef50_A8U8U9 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U8U9_9LACT Length = 415 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 21/259 (8%) Query: 2 QLSSSEPCVVILTEKEVEVSVNN-----HATFTLPKNYLAAFACNNNVIELSTLN-HVLI 55 L SSEP T +EV N A + + A + ++ + ++T+N H + Sbjct: 163 DLRSSEPVQPTSTRREVRYRQQNAQQLIEARYQFENILMEAISKGDSTLAVTTMNDHQEL 222 Query: 56 THINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHS----RTPEVFRLAANHSKQQPSR 111 T + D + L + SR A H E F L +K PS Sbjct: 223 TDFSSRNTADPVRAYKNILVTLNTLSRKAAEKGGVHPIYLDSISEKFALMIERTKDLPSL 282 Query: 112 PCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASS 171 +E++R LL E S I L S++ I I + L +A + Sbjct: 283 ---SEISRVLLT-------EYSESIWLYSNPEYSTIVKKAIHYILLHIDYPLTLEEIARN 332 Query: 172 LCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFIS 230 + ++P+ L +K K E + +Q + ++ A L + IT++A L G++ +YF Sbjct: 333 IYVNPAHLSRKFKGETQMTPTQFIHLKKVEEAKLHLEKGHLAITEIALLVGFNDPNYFGK 392 Query: 231 VFKAFYGLTPLNYLAKQRQ 249 VFK G+TP ++ ++ Sbjct: 393 VFKKVTGMTPSQFIRSTKK 411 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 44/251 (17%) Query: 11 VILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFL 70 V LTE E V ++ F P L FA N ++E + L + L+T + D + Sbjct: 124 VRLTELEHTVQIDILEAF--PLGRLRQFAVENFMVETAILFNSLLTPSH-----DKTMKA 176 Query: 71 NKNLTCVKP----WSRLATPVIACHSRTP------------EVFRLAANHSKQQPSRPCE 114 N L P ++R + CH P E R A H+ Q + CE Sbjct: 177 NAELCFEWPEPPYFARYRDRLPRCHFGAPANQIRCEAALLDEPIRTANAHTAQMIVQQCE 236 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 AEL R S+ + V ++ Y +L +A L L Sbjct: 237 AELARLGY---------------------AESIVERVRNLLIRGNNGYPSLDALARELHL 275 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 S LK+KL + +YS ++ E R+R A+++L + + ++A GY+ + F F+ Sbjct: 276 SERTLKRKLSDYGATYSALLDEIRLRDALRLLEGTHLTVEEIAARVGYTDRANFSRAFRR 335 Query: 235 FYGLTPLNYLA 245 + G +P + Sbjct: 336 WTGTSPSSRRR 346 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 167 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 115/195 (58%), Gaps = 1/195 (0%) Query: 55 ITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCE 114 + I + I+ + LN + + + + +P I +F+ AAN S + E Sbjct: 68 VALITQKTISLLVSALNSD-SLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAE 126 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 R+L+ ++S FL+ FI LLM IL + VC +I S+I + W+L ++AS L + Sbjct: 127 KLRKRSLMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLM 186 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 SPSLLKKKL+ E T+YSQ++TECRM+ A+++L D+ + + A LCGY S SYFI+VF+ Sbjct: 187 SPSLLKKKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRK 246 Query: 235 FYGLTPLNYLAKQRQ 249 +G+TP Y K++ Sbjct: 247 HFGITPTEYQDKRQH 261 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 162 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 12/247 (4%) Query: 7 EPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELST------LNHVLITHINR 60 + ++ LT ++ ++ ++ T + F + I ++ LN+ LI + Sbjct: 38 QSVLIKLTTGKISITTSSGEYIT-ASGPMLIFLAKDQTIHITMEETHEQLNYNLIELDSA 96 Query: 61 NIINDYLLFLNKNLTCVKPWSRLAT--PVIACHSRTPEVFRLAANHSKQQPSRPCEAELT 118 +I N Y FL ++ P ++ T + + VF L + +K Q + E Sbjct: 97 SIKNAYNFFLYEHADFSDPLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKEY- 155 Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 L+ +LS F+ + AL + ++++ +++ II SDI W L+ ++ SL +S S Sbjct: 156 --LIRFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCST 213 Query: 179 LKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 LK+KLK E+TS+S++ RM A ++L NIT+VA +CGY S SYF VFK + Sbjct: 214 LKRKLKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKT 273 Query: 239 TPLNYLA 245 TP +LA Sbjct: 274 TPSEFLA 280 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 90/248 (36%), Gaps = 44/248 (17%) Query: 11 VILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFL 70 V LT+++ V ++ F L L FA N ++E + L + L+ + Sbjct: 26 VRLTQRDGIVDIDVLEAFAL--GRLRQFAVENFLVETAILFNSLLDPAPGRTLQS----- 78 Query: 71 NKNLTCVKP----WSRLATPVIACHSRTP------------EVFRLAANHSKQQPSRPCE 114 L P + R + CH E A + Q + CE Sbjct: 79 RAELHFEWPEPPWFERYRARLPRCHFNASANRIRCDAALLDEPIGTANAQTAQMIVQQCE 138 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 AEL R S+ + V ++ Y ++ VA L + Sbjct: 139 AELARLGY---------------------AESIVERVRNLLICGDAGYPSVDDVARELHV 177 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 S LK+KL +YS ++ E R+R A+++L + ++A GY+ + F FK Sbjct: 178 SARTLKRKLAEFGATYSTLLDEIRLRDALRLLEGTRLPVDEIAARVGYTDRANFTRAFKR 237 Query: 235 FYGLTPLN 242 + G+ P Sbjct: 238 WTGVAPSE 245 >UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salmonella enterica subsp. enterica serovar Agona str. SL483 RepID=B5F2H2_SALA4 Length = 146 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 63/136 (46%), Positives = 93/136 (68%) Query: 11 VILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFL 70 ++LTEK+ + VN +L NY+A AC NNVI++S+LN VL+ ++RN I DYL FL Sbjct: 1 MLLTEKDTWLRVNGKEPISLKANYMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFL 60 Query: 71 NKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFL 130 NK+L+ + W R A P++ + TP++FR+AA +S + +E TRALLFTVLS FL Sbjct: 61 NKDLSHLPVWQRNADPLLTANCLTPDIFRVAARYSAMETPDEIVSERTRALLFTVLSRFL 120 Query: 131 EQSRFIALLMYILRSS 146 + +FI+LLM++LR+ Sbjct: 121 DHKKFISLLMHMLRTD 136 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 104/214 (48%), Gaps = 31/214 (14%) Query: 59 NRNIINDYLLFLNKNLTCVKP----WSRLATPVIAC-------HSRTPEVF-------RL 100 + NII D L+ +++ L P W R + + C H R P + RL Sbjct: 22 HLNIIKDSLILMDEKLAFRIPHNCSWVR-SLEIDECIVSNYLQHIRHPAQYSGKHTRHRL 80 Query: 101 AANHSKQQP-----------SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD 149 NH P + L+ L F+ LS F + LL + +++ Sbjct: 81 LINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLFSMHDELVPLLFNSI-NTLSG 139 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMD 209 V RII D W LR VA L S SL+KKKL++ENTS+S+I+ RM A +L ++ Sbjct: 140 KVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSFSKILLASRMARAKTLLELN 199 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 +T +A+ CGYSSTSYFI+ F+ +YG+TP Y Sbjct: 200 QMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQY 233 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 7/238 (2%) Query: 9 CVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLL 68 C +IL V + K N + S +H++I + +ND+ Sbjct: 5 CSIILVLNSFGVRI-GKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVNDFF- 62 Query: 69 FLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSN 128 KN T R P E F L N ++ R + Sbjct: 63 ---KNYTLSPFSVRRFYPSYLIVEC--EDFSLLKNLVACLNCDSKTVDVVRNQISLACLA 117 Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT 188 L + + ++ +S+ V II SDI W L ++S L +S SLLK+KLK+E Sbjct: 118 VLSSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGL 177 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 S+S+++ E RM A ++L+ N + +VA +CGY + SYF+SVF+ ++G+ P YL++ Sbjct: 178 SFSKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSR 235 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 L FLE S L S+ + R++ D + + +L VA L SP L++ L+ Sbjct: 242 LKQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLRE 301 Query: 186 ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 E TS+ ++ R A+ L D I +A+ G+S S F FK + GLTP Y A Sbjct: 302 EGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRA 361 Query: 246 KQ 247 ++ Sbjct: 362 QE 363 >UniRef50_A4XMG0 Two component transcriptional regulator, AraC family n=2 Tax=Thermoanaerobacterales RepID=A4XMG0_CALS8 Length = 529 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 92/211 (43%), Gaps = 18/211 (8%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR----------LATPVIACHSRTP 95 E S +N +L+ +++I D + +L +++ L + + CH + Sbjct: 323 ERSIINSLLLCQ--KDVIKDKVESFINSLYSTNTFNKWFIKSAVLALLGSLIKVCHEKCI 380 Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRII 155 ++ + ++ + + + EL +A L + L+ +++ I ++ + + I Sbjct: 381 DLNDVVSSKIFENILKTEKKELIKASLLSFLNATVDKIEQIE-----NKNLIVKAAISFI 435 Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNIT 214 + + L VA + ++P+ L K E ++ + + R++ A ++L N Sbjct: 436 EKNYNKNITLESVAKEVYVTPAYLSILFKRELKINFVDYLHKIRIQKAQELLKNQNLKTY 495 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 QVA + G+S YF VFK + GLTP + Sbjct: 496 QVANMVGFSDEKYFSQVFKKYTGLTPSQFRE 526 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%) Query: 86 PVIACHSRTPEVFR-----LAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM 140 PV + TP+V + +R + LT++L F +L+ + Sbjct: 133 PVYHLNE-TPDVVEQNFQLFQQSLPAVADTRLEKTFLTQSLFFILLALNEAGIDVFNVYR 191 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMR 200 + ++ R+I D Q W++ +A +L + S L++ L E S+SQ++ + RM Sbjct: 192 FNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMG 251 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A+ L N +I+Q+ G+ S +YF FK YG+TP + A R+ Sbjct: 252 LALNYLTFSNYSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE 300 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 10/217 (4%) Query: 43 NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPV----IACHSRTPEVF 98 + + + + + + + + ++ L +K + P+ H PE Sbjct: 55 SQVSCNIVCNTVKQPLELHTLSMSAEELQAVFLLLKTLMKSGAPLTSHQPIYHISPPETV 114 Query: 99 RLAANHSKQ------QPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVC 152 R + KQ Q + + ++L F +++ + E + L + ++ Sbjct: 115 RDNFSLLKQCLPLKKQSASQEALLMKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAIT 174 Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKN 212 +I + Q W+L VA +L +PS L++ L E S+ Q++ + RM A+ L N + Sbjct: 175 HLITQEPQKKWHLDDVAKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYS 234 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + Q++ CG+ S +YF VFK Y +TP + + RQ Sbjct: 235 VFQISHRCGFGSNAYFCDVFKRKYNMTPSQFRLQSRQ 271 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI--QHYWNLRIVASSLCLSPSLLKKKL 183 L L+++ ++ L+ +S+ + RI+Q ++ + VA L S L+++L Sbjct: 211 LPELLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRL 270 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 K ENTS+ I + R A+ L N +I ++A G++ S F FK + G+TP +Y Sbjct: 271 KEENTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDY 330 Query: 244 LAKQRQ 249 ++Q Q Sbjct: 331 RSEQAQ 336 >UniRef50_B8KT68 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KT68_9GAMM Length = 354 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 30/267 (11%) Query: 4 SSSEPCVVILTEKEVEVSVNNHATFT--LPKNYLAAFACNNNVIELSTLNHVLITHINRN 61 SSS + +L+ + V + A + A F+ E S L+ + + Sbjct: 84 SSSLLIIAMLSAENVREGLRFLAKYDRYFDSGITAEFSPEKVPAEFSP---NLLQDSSED 140 Query: 62 I--INDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEV---------------FRLAANH 104 + IN+YL+ + + +R P++ P F AN Sbjct: 141 VAQINEYLVAF--LVQTLFTATRTPMPLLEVAFSHPPPEDASPHAEFFKTQVRFGAKANG 198 Query: 105 SKQQPSRPCEAELTR-ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW 163 K P E L+R LLFT+LS ++ + + D+VCR I D ++ Sbjct: 199 IKFHPGYLDEPFLSRNKLLFTILSRAIDSY----FSLGSDGNGFVDTVCREIMVDTGNFN 254 Query: 164 N-LRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 + ++A L +SP L+++L +E ++ + R + A +L+ N +++++A GY Sbjct: 255 SDAAVIADRLRMSPRTLRRRLADEGHTFRDAKRQAREQRAKYLLVNSNFSLSEIAFELGY 314 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQ 249 S S F F+A+ G P Y R Sbjct: 315 SELSAFSRAFRAWTGEAPQAYRESARH 341 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 70/141 (49%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 S + L++ L+F +++ + + ++ R+I D Q W++ +A Sbjct: 131 SSMEKTLLSQCLVFILMALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMA 190 Query: 170 SSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFI 229 +L + S L++ L E S+SQ++ + RM A+ L N +I+Q++ G+ S +YF Sbjct: 191 KALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFC 250 Query: 230 SVFKAFYGLTPLNYLAKQRQK 250 FK YG+TP + RQ+ Sbjct: 251 DAFKRKYGITPSQFRTTSRQE 271 >UniRef50_UPI0001973B3B response regulator receiver protein n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973B3B Length = 369 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 13/176 (7%) Query: 76 CVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRF 135 CV+ + R + PE FR K+ P E E T+ L + LE Sbjct: 204 CVQEFVR----NLGIEEELPESFR----DIKRIPQAITEVEKTKHYLVGLFGCALEVRDR 255 Query: 136 IALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQI 193 ++ Y V I+ + ++L +VA+ + +SPS + E ++ + Sbjct: 256 VSSDRY---GQVIREAKSFIKENFSRGDFSLNLVAAHIGVSPSYFSSIFRQETGQTFVEY 312 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +T R+ A +ML N ++ + GY+ YF S FK G++P Y RQ Sbjct: 313 LTRVRIDSACEMLKCTNLRTAEIGERAGYNDPHYFSSAFKKVMGMSPKEYKTSVRQ 368 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 10/194 (5%) Query: 64 NDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLF 123 N L+ + V + L V A P + K+ A + L Sbjct: 69 NRPLVDADYQADGVSIANTLIDAVYAGQPAAPAATGIQVVRGKEHKPEDVLALMKETLAN 128 Query: 124 TVLSNFLEQSRFIALLMYILRSSVR----------DSVCRIIQSDIQHYWNLRIVASSLC 173 T L L Q R + L+++ V V +I++D+ + W VAS Sbjct: 129 TSLPEALRQHRLLEPLIWLRHIGVNLSKPDTDNPLSKVRSLIETDLSYAWRATDVASHFA 188 Query: 174 LSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 +S + ++ L +++++ R+ + +L ++ I+ +A CG+++ S+F FK Sbjct: 189 MSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQSTHEPISNIALDCGFNTPSHFSEAFK 248 Query: 234 AFYGLTPLNYLAKQ 247 +G+ P ++ Sbjct: 249 KRFGIRPKEIRVRE 262 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 129 bits (325), Expect = 7e-29, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 58 INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAEL 117 N N I YL N V A + A + T + + A + ++ + +EL Sbjct: 53 FNENTIKKYLQCTNIQTVTVPV---PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL 109 Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 LLF+ LS F FI LL + S V V I+ + H W L+ + L +S S Sbjct: 110 ---LLFSCLSIFAACKGFITLLTNGVLS-VSGKVRNIVNMKLAHPWKLKDICDCLYISES 165 Query: 178 LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 LLKKKLK E T++SQI+ + RM++A ++ ++ ++ ++A+ CGY+STSYFI F+ +G Sbjct: 166 LLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFG 224 Query: 238 LTP----LNYLAKQR 248 +P Y ++ Sbjct: 225 NSPKRVSKEYRCQRH 239 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 129 bits (324), Expect = 9e-29, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 116 ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ-HYWNLRIVASSLCL 174 EL A L FL +S L S + +I DI+ VA L L Sbjct: 198 ELPVAQSERTLVEFLRESPADLLARPAKDESYAGRIRALIGYDIECDLPAFESVAEQLGL 257 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 SP L+++LK E TSY ++ R A+ L +I ++AQ G++ S F FK Sbjct: 258 SPQTLRRRLKEEGTSYQELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSAFHRAFKK 317 Query: 235 FYGLTPLNYLAKQ 247 + GLTP +Y Sbjct: 318 WVGLTPSDYRQTH 330 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 129 bits (324), Expect = 9e-29, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLK 184 L FL+ S L ++ + ++ D+ Q + +AS + +SP L+++LK Sbjct: 269 LKEFLKTSPADLLARPDDSNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRLK 328 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ENTS+ +I R A+ L +I ++A G++ S F FK + G+TP +Y Sbjct: 329 EENTSFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYR 388 Query: 245 A---KQRQ 249 ++RQ Sbjct: 389 ESVLRERQ 396 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 ++ FT LS F + +F L L+S+ V II +D+ W L+ ++S L LS Sbjct: 110 FDESIAFTCLSAFSSEKQFGVFLFECLKST-EAKVKTIIHTDLSAPWRLKDISSRLYLSE 168 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 SLLK+KLK E S+S+I+ + RM+ A +L I++VA++CGY+S SYF VF+ ++ Sbjct: 169 SLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYF 228 Query: 237 GLTPLNYLAKQRQKVM 252 G++P Y + + + Sbjct: 229 GVSPSQYSQRSSESKI 244 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 + L +FL Q I + R + DSV I++ D+ H W L+ VA SL +S +++KL Sbjct: 201 SGLDDFLLQKSKI-----VQRECLSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKL 255 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 ++E ++ +++ R+R A LL ++T++ L G+S S+F FK + G P Y Sbjct: 256 QDEGQTFRKLLNNARIRTAESYLLNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQY 315 Query: 244 LA 245 Sbjct: 316 RK 317 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 5/223 (2%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLA 84 L + + ++ + H L+T + +I ++ P+ + Sbjct: 77 LERNQLINITMQEVD-GHLSFDVLDIPHELLTIAHELLIE---KLQTEHQPGEHPFRIVY 132 Query: 85 TPVIACHSRTPEVFRLAANHSKQQPSRPCEAE-LTRALLFTVLSNFLEQSRFIALLMYIL 143 + A ++ R + K+ E E + L +LS F+ + F ++ Sbjct: 133 SNDFAARKEVFDLLRFTLSQEKKGIFENEEKENIATYALLLLLSGFIHDTAFAGIISRSA 192 Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 + SV+ V ++ ++ W L V+S++ +S S LK+KL E T++S++ RM A Sbjct: 193 KLSVKYKVYNLLYTEPDKQWKLDDVSSAIFMSASTLKRKLATEGTTFSELYITARMNLAS 252 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++L ++T VA LCGY S SYFI+ FK + +TP ++ Sbjct: 253 KLLRTGKYSVTNVAVLCGYDSVSYFIACFKRQFNITPSAFMKS 295 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD--SVCR 153 + F+ + + + + +L+ F++ ++ + ++ + V Sbjct: 92 DDFKFVQKALRIKVDDYLLKPIRPQKIVDILNEFIKDNK--KRIEESNKNCTEEFQEVVE 149 Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKN 212 I + ++ L+ VA + S S L K K E ++++ +T+ R+ A ++L+ N + Sbjct: 150 YIDKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILINSNIS 209 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 I ++A GY+ +YF VFK +TP Y R Sbjct: 210 INEIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 17/230 (7%) Query: 23 NNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 + + + A + L L+ +I D+ L ++ L + SR Sbjct: 194 SGRYPMDKERELVRAVKEGDQTTARQLL-RELLEYIQSATGEDFCLMRSRALELMAVLSR 252 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAE-LTRALLFTVLSNFLEQSRFIALLMY 141 A ++ + S + A LTR RF + Sbjct: 253 AAVDGGGDQDTILDMNSRCFSESDHLRTAEELALWLTR-----------MTDRFTDTVFS 301 Query: 142 ILRSSVRDSVCRIIQ---SDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTEC 197 ++ RD +C+ I+ + + L A + LSPS + K E S++ +T Sbjct: 302 LVEVKHRDIICKAIEYLKRNCRDRVTLEDTAGHVGLSPSYFSRVFKEEVGESFNSYLTAL 361 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 R+ MLL + +I ++ CG+ SYF VF+ + G+TP + A++ Sbjct: 362 RISRGRAMLLDTDASIAEICDRCGFDDQSYFTKVFRKYTGVTPGRFRARR 411 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 L+ ++ L ++++S R V +I++ N + +A +L +S L++KLK+ Sbjct: 63 LARVNDEQTQAYLDSFVVQSISRGVVDKIVEHLPDGPPNQQQIAQALHVSNRTLQRKLKD 122 Query: 186 ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 E TS+ ++ + R++ A + L N+++ + A + G+S S F FK + G+ P ++ Sbjct: 123 EGTSFMDLLQDTRLQLARKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPADFRD 182 Query: 246 KQR 248 R Sbjct: 183 SHR 185 >UniRef50_C2D366 Putative uncharacterized protein n=1 Tax=Lactobacillus brevis subsp. gravesensis ATCC 27305 RepID=C2D366_LACBR Length = 406 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 85/248 (34%), Gaps = 12/248 (4%) Query: 3 LSSSEPCVVILTE-KEVEVSVNNHATFTLPKNYLAAFACNN--NVIELSTLNHVLITHIN 59 L +P + E + L + + A N + + LI+ + Sbjct: 160 LKPDQPLHAKTVQAINAENQQAIEKRYQLEADMMQLVATGNLDKISQFQQPLTQLISLFS 219 Query: 60 RNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLA-ANHSKQQPSRPCEAELT 118 + N L R+A H + A ++Q + L Sbjct: 220 SRVPNQPLRSGKNICFVNNTLCRIAAKQGGVHPVFLDSISEKSAVLIEKQNTIQGLKNL- 278 Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 VLS + ++ + S + I + H ++L A L +P+ Sbjct: 279 ------VLSMLRDYTQLVMDTSSANFSPIVKRAIDFILIHLGHQFSLADAARQLSTNPAY 332 Query: 179 LKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 L +K K E +++ R++ A L+ +IT +A L GY+ +YF VFK G Sbjct: 333 LSRKFKEETGLTFTAFTNHRRIKIAKDYLVNQQLSITDIAGLIGYNDLTYFTRVFKKQTG 392 Query: 238 LTPLNYLA 245 TPL Y Sbjct: 393 QTPLQYRK 400 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 + D I + + +L V+ + +SP K K E ++ + +TE R++ A ++ Sbjct: 429 IIDRAKEYINENFRRDISLDDVSREVDISPYYFSKLFKQETGKNFIEYLTEIRLKNAREL 488 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 L +I ++ GYS +YF +FK + G+TP + + Sbjct: 489 LQDSRLSIKEICAQSGYSDPNYFSRIFKKYEGVTPSEFRER 529 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 5/192 (2%) Query: 55 ITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCE 114 I I++ + + +N L + + VF L + + Sbjct: 50 IVDIDKKTCLSFFIDVNNELPGKFTLDKNG-YIAEEEPPLSLVFSLFEG---IKIADSHS 105 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 L L ++L+ F ++ + ++ + ++ + II +I+ W+L+ +A + Sbjct: 106 LWLKERLCISLLAMFKKRESVNSFILTNI-NTFTCKITGIISFNIERQWHLKDIAELIYT 164 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 S SL+KK+L++E TS+++I+ + RMRYA +++ ++ +I VAQ CGY+STSYFI FK Sbjct: 165 SESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 Query: 235 FYGLTPLNYLAK 246 +YG+TP +Y K Sbjct: 225 YYGVTPSHYFEK 236 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYA 202 S+ +++ +I+ + + NL +A + S L K S+ Q +T+ RM A Sbjct: 423 EPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRMNKA 482 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 VQ+L +++ +A+L G+S+ SYF + FK +G++P Y K + Sbjct: 483 VQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQKDKN 529 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 S+ + +Q + +L V+ + +SP K K E ++++ +T R+ A Sbjct: 426 ESLVEKARSYMQENYSREISLDDVSKEVNVSPYYFSKIFKEESGENFTEYLTNIRIGKAK 485 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 ++L +I ++ + GY+ +YF +FK G+TP Y + Sbjct: 486 ELLENPELSIKEIGVMSGYTDPNYFSRIFKKHTGITPREYRERYY 530 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 LT L +L++F+E++ + + L+ + + ++I + W L I++ + +S Sbjct: 182 LTEVLFIQLLNSFIEKNEHLTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGMSR 241 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 + L++K K S ++ RM A Q+L N ++ +A + G+S FK Sbjct: 242 ATLQRKFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDH 301 Query: 236 YGLTPLNYLAKQRQ 249 YG TP + K + Sbjct: 302 YGDTPSQFRKKLEK 315 >UniRef50_D2LZT6 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZT6_BACS4 Length = 512 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 70/193 (36%), Gaps = 16/193 (8%) Query: 55 ITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCE 114 + N D L + L + SRL + + AN +Q S E Sbjct: 330 LIQSYENEGADTLQTQQRILELLWIVSRLMNEMGV--ETVSPFYSFQANDYRQLRSETNE 387 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 L+T + LE + R I +L +A + L Sbjct: 388 LLQQMRQLYTKHYDQLELDSIFLM-------------KRYILEHSHEDISLDKLAKKVGL 434 Query: 175 SPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 SP + K K + +Y +TECR+ A Q+L +K+I ++ GY +YF VFK Sbjct: 435 SPIYMSKLFKEKLGVNYIDFLTECRIEKAKQLLKRPDKSIKEITFDVGYHEPNYFSKVFK 494 Query: 234 AFYGLTPLNYLAK 246 G++P Y Sbjct: 495 KMCGVSPKEYRKS 507 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 143 LRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRY 201 +++ + V + + +QH L+ VA L +S L++K K + T++ IV + R Y Sbjct: 224 QKNAANEVVTQFVIDSLQHKVPTLQDVAEHLGVSARNLQRKFKQQGTNFKTIVDDIRKEY 283 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A LL N +T +AQ+ G+S S F FK + G+TP Y Sbjct: 284 AFTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWTGMTPGEYRIHH 329 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%) Query: 139 LMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECR 198 L + + + + I+ Q +A + +SP L+++LK E TS+ IV++ + Sbjct: 234 LRIRKQETASSRIVQEIEFRRQGVPGFDDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQ 293 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A+ +L N I Q+A GY F FK + G TP +Y Sbjct: 294 KEKAIHLLQTTNLPIQQIALELGYEDLPNFYRAFKRWTGKTPGDYRQSN 342 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 7/182 (3%) Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFR--LAANHSKQQPSRPCEAELTRALLFTVLSNF 129 L P+S H + P+ R L + + P CEA +T L+ +++ Sbjct: 101 NKLVQQTPFS---DLHPVHHCKDPQAVREALYNIYLSRGPEPQCEALMT-GYLYIFMAHL 156 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENT 188 ++++R + S S + IQ + H ++ +A ++ +S S L + N Sbjct: 157 MKEARDAMPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYRVFMANVGQ 216 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 S +T R+ A +L N +I ++A G+ YF VFK G+ P YLA Sbjct: 217 SPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKYLATLE 276 Query: 249 QK 250 ++ Sbjct: 277 KE 278 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 I L VA +SP K K ++ VT R+ A + L Sbjct: 412 KAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAE 471 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 ++++ ++ GY+ +YF VFK GL+P Y K + + Sbjct: 472 TDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQAR 513 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 52/96 (54%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMD 209 V I+ + QHY ++ VA L +S LK++L E TS+S +V E R R+A +L Sbjct: 242 RVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 301 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + ++ Q+A GYS + F FK + G +P N+ Sbjct: 302 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 337 >UniRef50_C6LB63 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LB63_9FIRM Length = 517 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 13/216 (6%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANH- 104 E++ L + ++ I +N I L K+ +L P C + +F++ Sbjct: 302 EIADLLNPMLEKIKQNDIISAFQML-KSAVVKNMEDKLPEPGKLCRAVMLLLFQIVKALD 360 Query: 105 ---SKQQPSRPCEAELT-------RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRI 154 S++ + E+ + LL V LE + I I V + Sbjct: 361 SMMSEEMKQKTDESLMRIYQSQTLERLLRFVYGFLLEIGKNINFQKEIRGVDVLEHCREY 420 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNI 213 ++ + ++A + S KN S+S +TE RM+ A + L+ + I Sbjct: 421 LEKHYMDEITMEMIAEKYYFNASYFSTVFKNYFGKSFSGYMTELRMQKAKEFLISTDWKI 480 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 ++A GY +YFI FK FYG TP Y Q Sbjct: 481 KEIASKTGYRDANYFIRAFKKFYGYTPEEYRKLSAQ 516 >UniRef50_UPI0001C36527 two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36527 Length = 403 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 8/223 (3%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLA 84 + + L A A + L T ++R D L R A Sbjct: 187 EDRYRMENELLHAIASGDADTALRICRKFSSTSVSRR-FKDPNRDRRNILITSNAIYRKA 245 Query: 85 TPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILR 144 H + RL++ +K+ + E E +R L ++ + R +L + Sbjct: 246 AENGCVHPVHID--RLSSGFAKKIETVCTEREASR-LALEMVRKYCLLVRNFSLKGH--- 299 Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 S+V + I ++ H +L+ ++ C++ S L K E S + + E R++ A+ Sbjct: 300 SAVIQKIVNHIDLNLAHDLSLKRLSEEYCVNASYLSTLFKKEMGQSITAYIAEQRIKQAI 359 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 L + I ++A G + +YF +FK G+ P Y Sbjct: 360 LYLNSTDMQIQEIALAVGITDLNYFSKLFKKMTGMPPSVYKKN 402 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLK 184 L NFL + + + D V I++ D+ + VAS L +S + L++KL+ Sbjct: 223 LLNFLRTAPYHLVTEDPAHIRFADKVRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQ 282 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 N+NTSY ++ ECRM A +L + + ++AQ G+ S F FK + G TP Y Sbjct: 283 NDNTSYQRLKDECRMEAAFHLLNCADLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEYR 342 Query: 245 AK 246 A+ Sbjct: 343 AR 344 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 V+ F+ ++ + D + IQ L VA + S L Sbjct: 392 AVVEAFIREAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVARQFHFNASYLSSYF 451 Query: 184 KNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 + +S+ + + R+ A+++LL I++++ GYS SYF VFK G++P Sbjct: 452 ASYNGEGFSEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFTKVFKKQTGISPSQ 511 Query: 243 YLAKQRQKV 251 + + +++ Sbjct: 512 FRRQNAREI 520 >UniRef50_UPI0001788C2F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C2F Length = 532 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYA 202 +++ +S R I+ + +L +A P+ + K S+ Q VTE RM++A Sbjct: 417 DATLIESAKRYIEENYMQELSLTSLAEQYNYHPTYFSEMFKEGAGVSFIQYVTEVRMKHA 476 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 V++L + +A+L G+SS YF S FK + +P + Q +K+ Sbjct: 477 VRLLQETRLTVWDIAELTGFSSPGYFSSKFKKMFNQSPSEFRLSQSEKI 525 >UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY2_9CLOT Length = 252 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%) Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNL 165 K P E +++AL + S++ EQ V V I+ I H Sbjct: 106 KPIPYEELEFVISQALEHSKKSHYQEQVLGSLYPADSQEPGVVHRVKEIVSQFISHDLTR 165 Query: 166 RIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 +A + L+P L K E + S+ + R+ A +L + ++ +A GYS Sbjct: 166 EQIAELVHLAPDYLSHLFKKETGVTLSEYIASQRLTMAKYLLAQTSLPVSSIADKVGYSY 225 Query: 225 TSYFISVFKAFYGLTPLNYLAKQRQ 249 SYF VFK YG+TP+ Y +++ Sbjct: 226 VSYFNRVFKKAYGMTPVEYRRSEKK 250 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 +S L + + ++ + + + + ++ +L+ +A LS + +K K Sbjct: 414 ISGRLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFKQ 473 Query: 186 E-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E + S + R+ A +LL I Q+A++ GY YF VFK G TP Y Sbjct: 474 EFGVTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEYR 533 Query: 245 AKQ 247 K Sbjct: 534 KKH 536 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Query: 135 FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQI 193 +I + + I H L VA + +SP K K+ ++ Sbjct: 398 YIQAWRHQQANGKIGKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDY 457 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 VTE R+ A + + NK++ ++ L GY+ +YF VFK G++P Y K Sbjct: 458 VTEVRIARAKKEMADPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKK 510 Score = 42.7 bits (99), Expect = 0.012, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 198 RMRYAVQMLL---MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 ++ A + + +VA+ G S YF +FK +G+T ++Y+ + R Sbjct: 410 KIGKAKDYIDEHYHHPLTLEEVAEYVGIS-PYYFSKLFKDRFGMTFIDYVTEVR 462 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 82/200 (41%), Gaps = 6/200 (3%) Query: 54 LITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIA---CHSRTPEVFRLAANHSKQQPS 110 +++ R D L+ ++L + + + E+ + K + Sbjct: 294 IVSDDLRLKDYDSLMHHLEDLFESLKHEKTHSLIFVKYCFTELMKEIIHYLPDDQKPDLN 353 Query: 111 RPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSS--VRDSVCRIIQSDIQHYWNLRIV 168 + E + A + ++ Q++ + + S D + + I + +L + Sbjct: 354 KVAEKIYSSANIVELMDMTCSQAKKLLSQTQKNQGSCLKSDKIRQYIYQNYTQPLSLNDI 413 Query: 169 ASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 +S +SP+ L K E + + + E R+ A ++LL + ++A+ G+S+ SY Sbjct: 414 SSHFYISPNYLCSVFKKETGCNLMKFINEYRLEQAAKLLLETEMKVNKIAETVGFSNPSY 473 Query: 228 FISVFKAFYGLTPLNYLAKQ 247 F F+ +YG +P NY K+ Sbjct: 474 FSQRFRDYYGESPENYRQKE 493 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 I V S I+ + Q+ L VA + +SP L K K E ++ VTE +M+ Sbjct: 144 IQDGKVIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKMNFVSYVTEKKMQ 203 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++L + + +A Y +YF VFK G+TP Y + ++ Sbjct: 204 KAKELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRKRSKK 252 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-N 187 FLE+ + +++ + V + I + + L+ ++ ++ L+P + K E Sbjct: 408 FLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVG 467 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +Y++ +T R+ A + L + I+++A+ GY +YF VFK G++P + Sbjct: 468 CTYAEYLTRIRIEAAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRK 525 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 81/224 (36%), Gaps = 12/224 (5%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLA 84 L + A + + L+ N + ++N D++ L V S Sbjct: 150 KYPLKLEEKLSKAIKRGDKDLALNIFNDIWNEFHDKNYTEDFIKRWGLGLVAVITRS--- 206 Query: 85 TPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILR 144 +Q S E R + ++ E +++L Sbjct: 207 ----FIEIGENADILFKETDPWRQISELSTKEKFREWMRNIIEVVCE---YVSLTKNSKN 259 Query: 145 SSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 + D ++IQ + +L +A L ++P+ L K+E ++S +T CR+ A Sbjct: 260 RKLIDEAIKLIQENYSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIEKA 319 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++L I +VA+ GY+ YF VFK G TP Y K Sbjct: 320 KELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUN9_9FIRM Length = 493 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 9/210 (4%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR----LATPVIACHSRTPEVFRLA 101 + L L+ H+ I + L+ +L + + V+ + F + Sbjct: 273 ATAKLVDQLVGHLYEAIDKQNSIKLDADLDSFLAFCQERELAPQEVVQLTALIRHYFDIK 332 Query: 102 ANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFI--ALLMYILRSSVRDSVCRIIQSDI 159 +N + P+ + + L F +LS L++S + + L + + V I Sbjct: 333 SN--QHTPTSLLDEGANQPLTFALLSQHLKESLDLGGREKRHHLYPPIVNEVLAAIYERY 390 Query: 160 QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218 +++ +A L ++ L + K E + S+ + + R+ A +L+ ++ Q+A Sbjct: 391 NENISMKSLADDLHVNVMYLGQLFKREVGMTLSRYINQYRLAIAKDLLIASKLSVAQIAV 450 Query: 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 GY + +YF VFK G++P Y Sbjct: 451 KVGYQNQAYFYRVFKQSEGVSPKEYRQHYH 480 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 2/177 (1%) Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 ++++LT L A S P + + + Q+ LS Sbjct: 347 MSESLTIRSAQKELRKLGAAAGSEWPAITTASPLLADQRAIDSVMTLSALHAYVAELSAA 406 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENT 188 +E + + + + + L +A+ + PS L ++ K Sbjct: 407 IEAHIRARASSSDASNPMSE-IVAYLDGHYFEDVGLIDMATRYHMDPSYLSRQFKAATGV 465 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ + VT RM A ++L ++ ++ +A+L GY + YF VFK F G TP + Sbjct: 466 NFIEYVTRKRMEKACELLRESDRKVSDIAELVGYENQRYFSQVFKKFTGQTPSEFRE 522 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 1/129 (0%) Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW-NLRIVASSLCLSPSLLKK 181 L FL + + + L+ S + V I++ ++ + ++ L +S + +++ Sbjct: 220 HESLMAFLSTAPYHLVTQDPLKLSFTERVRNILKREVNRSIPSAEQLSEMLNMSVTTMRR 279 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 +L E TSY ++ ECRM A+ L + +A+ G+ S F FK + G TP Sbjct: 280 QLSKEGTSYQKLKDECRMEVAIHYLACAELSNADIAEKLGFDEPSAFFRSFKKWTGQTPG 339 Query: 242 NYLAKQRQK 250 Y +Q K Sbjct: 340 EYRQQQLPK 348 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 1/109 (0%) Query: 138 LLMYILRSSVRDSVC-RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 LL + + V +++ + + + +A +L +SP L+++LK ENTSY ++V + Sbjct: 223 LLKSLRTGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVVQQ 282 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 RM+ A Q+L + + T+V CG+S S F FK + G TP +Y + Sbjct: 283 TRMQLAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYRS 331 >UniRef50_C0D3A6 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3A6_9CLOT Length = 505 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 9/194 (4%) Query: 60 RNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTR 119 + I ++ FLN + + ++ R A+ + S + R Sbjct: 314 EDDIRAFVRFLN---DKTYACADIREALVCLTVAVLYAIRKASYGVYENISHLNLMDWIR 370 Query: 120 ALLFT-----VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 LLFT ++ N L Q R ++ + RII + +L +A SL + Sbjct: 371 QLLFTDHYIQIMMNVLMQYRHYHDGLHHNAHPLVQKALRIIDQGYKGELSLEEIAGSLSV 430 Query: 175 SPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 +P L E ++ T+ R+ A +L N+ I +VA GY YF VFK Sbjct: 431 TPEYLSTLFIRELGIKFTTYCTQRRIECAKHLLADPNRKIYEVAGESGYGDVKYFCKVFK 490 Query: 234 AFYGLTPLNYLAKQ 247 + GL+P Y Q Sbjct: 491 KYTGLSPGEYQKNQ 504 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 126 LSNFLEQSRFIALLMYI--LRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKK 182 L FL + + L+M +++ V +I D + + +++S+L +S L+++ Sbjct: 208 LREFLRTAPYQMLIMENDPAGNNLSAQVKAMIGHDFSEGFPSFEMISSALSMSAPTLRRR 267 Query: 183 LKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 LK E T++ QI + R A L + +I +VA G++ S F FK + G TP Sbjct: 268 LKREGTTFQQIKDDSRCEAAKLCLNRHDLSINEVAMQMGFTDPSAFHRSFKKWTGQTPGQ 327 Query: 243 YLAKQRQ 249 + ++ R+ Sbjct: 328 FRSQLRR 334 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 + + ++ +L VA+ L ++PS + K E ++ + VT+ ++ A ++L Sbjct: 437 EARKYVSMNLGKRISLEEVAAHLHMNPSYFSRFFKKETGLTFIEYVTDQKIERAKELLDQ 496 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 N ++++ ++ GY + SYFI FKA GLTP Y Sbjct: 497 TNYYVSEICEMLGYDNQSYFIKTFKAQTGLTPTEYR 532 Score = 42.7 bits (99), Expect = 0.012, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 10/158 (6%) Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 ++ + R A + + E + + VL ++ + +++ ++ + + Sbjct: 338 AKDSDKVRTLAGKWETHIRK--EQYASEEVRDWVLKLLIDMRLKLHAMLFASQTLTAEKL 395 Query: 152 CRIIQSDIQHYWNL-RIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 + I W L + L S + + + S + V+E R ++ + Sbjct: 396 HKEI-VYFDSLWGLFEWFHTQLQ---SYIAAREEALPVSKRREVSEARKYVSMNL--GKR 449 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 ++ +VA + SYF FK GLT + Y+ Q+ Sbjct: 450 ISLEEVAAHLHM-NPSYFSRFFKKETGLTFIEYVTDQK 486 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 + C I L+ +A + LS + + + K E +Y++ + + RM A ++L Sbjct: 437 ERACEYITLHYAEDLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLK 496 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + A L GYS+TSYFI +FK + GL+P Y+ +QR Sbjct: 497 RQTLKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQQR 537 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 49/98 (50%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMD 209 + +Q +L+ +A L +S LK+ L+ SY Q+ E R + A ++L+ Sbjct: 245 RIRSALQDHPAPLPSLQGMAERLAVSARTLKRHLQQAGLSYRQLQDEERYQQARRLLVQS 304 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +I++VA GY+ + F FK + G+TP Y K+ Sbjct: 305 ENSISEVAYRLGYNDVANFSKAFKRWSGMTPSAYREKR 342 >UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HU78_ACIBC Length = 342 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCR-IIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 L +FLEQ+ L+ + +++ + R +++ + L+ VA L +S + ++++LK Sbjct: 215 LYDFLEQTPQNLLVRFKNENALSVVIRRHLLKLHPAEWPELKDVAQQLNISEATVQRRLK 274 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +E SY QI E R A++ L N +I +++ + S F FK + G++P Y Sbjct: 275 HEGVSYQQIKNEIRCDIAIERLSKSNDSIQDISEDLNFHDPSAFHRAFKKWTGVSPGAYR 334 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 1/131 (0%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 L+ L + LS F + I LL + S+V V R+I DI W LR +A + S Sbjct: 108 LSNMLYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSE 166 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 SL+KKKL++ENT +S+I+ RM A ++L + + +A+ CGYSSTSYFI+ F+ +Y Sbjct: 167 SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 Query: 237 GLTPLNYLAKQ 247 G+TP + Sbjct: 227 GVTPHQFAQHS 237 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 136 IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVT 195 AL + V R+I++ L VAS+L +S LK++L+ E S+ +V Sbjct: 229 TALKQLKEDAGFACRVRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVD 288 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + R+ A +L N++Q+A GY+ + F FK + GL+P ++ ++ Q Sbjct: 289 QVRLERARDLLASTTMNLSQIADSLGYADAANFTRAFKRWTGLSPSHFRNRELQ 342 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLK 184 L L Q ALL + +S+ V ++ + H + +A +L LS L+++L Sbjct: 217 LQQLLRQH-AEALLARLPSASLSARVIGLLGEQLAHGEPDRAQLARALHLSERTLQRRLA 275 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E +Y Q++ + R + A + L ++A L GYS S F F+ + GL P Y Sbjct: 276 EEGCNYQQLLADTRRQLAERYLREGRLPAAEIALLLGYSEPSVFFRAFRQWTGLPPGEYR 335 Query: 245 AKQ 247 A+Q Sbjct: 336 AQQ 338 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQS-DIQHYWNLRIVASSLCLSPSLLKKKLK 184 L F+E+S L+ S+ V +I+++ D + L +A L ++ L +KLK Sbjct: 211 LDRFIEKSPRNLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAYTLSRKLK 270 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E +SY +I R AV ML N +++++ G++ F FK + GL+PL Y Sbjct: 271 AEGSSYQKIKDNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTGLSPLAYR 330 Query: 245 AK 246 + Sbjct: 331 KQ 332 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 85/215 (39%), Gaps = 7/215 (3%) Query: 38 FACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEV 97 + ++ + VL +++ + + R ++ P++ Sbjct: 194 IHKEPSTDDVDGMKSVLASNLTKITATATFNLYKNLYAILLYPLRTQGDESLLNAVKPQI 253 Query: 98 FRLAANHSKQQPSRPCEAELTRALLF-----TVLSNFLEQSRFIALLMYILRSSVRDSVC 152 L ++Q P + LF + +FL + + + + + V Sbjct: 254 L-LLKTQLRKQCQAPITLTTSLPFLFWEEGPKIYQSFLSGTSPLVQEVRHKKEQLAVRVY 312 Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNK 211 +++ +L+ VA L L+ + L K+ K E +S + RM AV++L N Sbjct: 313 EYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMDRAVELLAETNM 372 Query: 212 NITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++Q+A+ GY SYFI VFK + +TP + ++ Sbjct: 373 KVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 2/105 (1%) Query: 145 SSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 S + + IQ Q L VA L +SP L + +K E S+ ++T+ RM A Sbjct: 293 SPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIRMEKA 352 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++LL I ++A+ GY + YF + FK G++P Y + Sbjct: 353 AELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRRTR 397 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLK 184 L FL+ + L+ + +S+ + +++S I + L VAS L LSP L+++L Sbjct: 211 LEEFLKAAPAQLLVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLA 270 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E SY + R A+ +LL + VAQ G+S TS F FK + G+TP Y Sbjct: 271 AEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLYR 330 Query: 245 AKQ 247 Sbjct: 331 QLH 333 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 28/176 (15%) Query: 97 VFRLAANHSKQQPSRPCEAEL---------------TRALLFTVLSNFLEQ---SRFIAL 138 VF+ A+ +++ + E L + LL +L+ E+ +F+A Sbjct: 347 VFKNQASALEEEKLQLMEMLLLARRMVQDQGGAPVRDQELLSALLAAGEEETARQKFVAA 406 Query: 139 LMYILR---------SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NT 188 ++ + + + I+ + + +L VA ++ +SP K K E Sbjct: 407 MVELAQAVVIKNQEPDGIITRAQDYIRQNFRKDISLEEVARTVGISPYYFSKLFKEEAGM 466 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++++ +T R+ A ++L +I QV GY++ +YF +FK + G+TP + Sbjct: 467 NFTEYLTGIRIETAKRLLSERELSIKQVCVDSGYANPNYFSRIFKKWVGITPTEFR 522 Score = 39.6 bits (91), Expect = 0.098, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Query: 199 MRYAVQMLLM---DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + A + + ++ +VA+ G S YF +FK G+ YL R Sbjct: 425 ITRAQDYIRQNFRKDISLEEVARTVGIS-PYYFSKLFKEEAGMNFTEYLTGIR 476 >UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF7_9BURK Length = 340 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 47/112 (41%) Query: 136 IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVT 195 + L ++ V +Q H L+ +A+ L+ + L+ E TS+ Q++ Sbjct: 227 LQLQRLQAGGTLAQRVRMQLQQSEGHMPTLQAMAAKENLTERTFMRHLQAEGTSFQQLLD 286 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 E R A ML + + +A GY S F FK + G TP +Y + Sbjct: 287 EVRQERACWMLAHTDSTVEAIAYALGYEDASNFSRTFKRWCGQTPKDYRHQH 338 >UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYS4_9BACL Length = 527 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 24/216 (11%) Query: 53 VLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRP 112 +IT N + LL ++ RLA ++A TPE ++ + R Sbjct: 305 TVITQEEENELGSILLEQDRMALRAWTH-RLADELVADPECTPESYQACLQSAAVAAHRW 363 Query: 113 CEAELTRALLFTVLSNFL--------------EQSRFIALLMYILRSSVRD-------SV 151 E L RAL + F E R + +M + + + Sbjct: 364 LERTL-RALGKEGAARFAPWLQQHIGGAKLKDELFRHLHAVMSLYHGQLGEGQASHVQRA 422 Query: 152 CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDN 210 ++S +L+ VA+ + L PS L + K E +++ VT RMR A+++L + Sbjct: 423 KAYMESCPAEELSLQQVAAYVHLHPSHLSELFKKETGSTFGYYVTALRMRRAMELLAVSP 482 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++++A L GY YF +FK G TP + + Sbjct: 483 AKVSEIAGLTGYEDVKYFSRLFKKHTGKTPSEFREE 518 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 V+ ++ AL + + I ++ +L+ VA + L+PS K Sbjct: 133 VMKQLIDDKLINALDRHPQTREPIREAIQFIDQRLKDDISLKDVAEHVHLNPSYFSTLFK 192 Query: 185 NE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + ++S+ +T RM+ A ++L+ + + ++A+ CGY + YFI +FK G TP +Y Sbjct: 193 EQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTAKYFIHLFKEMEGKTPSSY 252 Query: 244 LAKQRQK 250 Q+ K Sbjct: 253 RKSQKGK 259 >UniRef50_UPI0001C36195 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36195 Length = 145 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYS 191 SR + + + V S+ I+ + N+ +A L+ S L K + + Sbjct: 11 SRLLDGVRNKESADVIISIREYIEKNYDDSLNVADLARKYGLNVSYLSTLFKERTGINIT 70 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY--LAKQRQ 249 + RM A+ +L N +T+VA GYS++ YF VFK + G+TP Y + K+R+ Sbjct: 71 SYIEGIRMEKAMNLLRETNWKVTEVAFHVGYSNSGYFSRVFKKYTGVTPGEYGEMEKKRR 130 Query: 250 KV 251 K Sbjct: 131 KT 132 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 5/146 (3%) Query: 103 NHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH- 161 + + + E L L+ +E L LR +V V I+ + Sbjct: 192 SLAFNKDFLTFELPQRNPYLHQALTRQVEA----LLQKLSLRRTVSHKVKAIVAKRLSRG 247 Query: 162 YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 VA + +S L +KLK E S+ ++V + R A+ L +++++A L G Sbjct: 248 DIEAEKVAEKMNMSRHTLYRKLKQEGVSFQELVEQVRKDKALDYLQKGKYSLSEIAFLLG 307 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQ 247 +S S F FK + G +P +Y ++Q Sbjct: 308 FSELSAFSRAFKRWTGESPASYRSQQ 333 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 128 NFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-E 186 F E + ++ Y + + +Q + Q NL+ +A LS + +K K Sbjct: 401 EFKELVKILSDAKYQKEKNSMQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDY 460 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + + + +T RM A +L I +VA GY + YF VFK G+TP Y Sbjct: 461 DATITDYLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQS 520 Query: 247 QRQKV 251 K Sbjct: 521 YSTKS 525 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 4/192 (2%) Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 I++D + + L V+ + + F+ N +Q + Sbjct: 52 ILSDIRMPVMDGLAFVRELRQRQPRQDVILITVHDDFQFIQNAIRQGVCDYLLKPVELPA 111 Query: 122 LFTVLSNFLEQSRFIALLMYILRSSV---RDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 + L N+L++ R A V R + NL A + ++PS Sbjct: 112 MKECLENWLQRRRREAAAAAGPEEQALSPIQQVLRYMAETPLGDINLTDAARRVHMNPSY 171 Query: 179 LKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 L + K E + VT+ +M+ A ++L I+++A GY+ +YF ++FK Sbjct: 172 LSQLFKQEMQVCFVDYVTDLKMKEAKRLLATTTLRISEIADRLGYADLAYFSNIFKKHTA 231 Query: 238 LTPLNYLAKQRQ 249 +P Y +Q + Sbjct: 232 CSPSEYRKQQAR 243 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLK 184 L FL+ + + L+M +S++ V ++ D + VAS+L +S S L+++L Sbjct: 219 LRGFLKTAPYQLLVMVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLN 278 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +E TSY I +CR A+ + +I +A L G+ S F FK + G+TP Y Sbjct: 279 DEKTSYQSIKDDCRKEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEYR 338 Query: 245 AKQ 247 + Sbjct: 339 KSE 341 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 RS + D+V R I++ + NL ++A+ LSP+ L +K S + + R+ A Sbjct: 375 RSEIVDNVIRYIKNHYKEDINLNVLANEFFLSPAYLSRKFSQTTGVSIMSYLEDYRINVA 434 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +L ++I+++A GY +YF +FK G+TP + + Sbjct: 435 TDLLKGSERSISEIADQVGYYDANYFTKIFKKVKGITPKEFRKMSK 480 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 95 PEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRI 154 P VF + + + A T +L + + VR +CRI Sbjct: 184 PLVFGAPHDALVFERADMEAALPTANEAMAILHDRFAGEYLARFSESRVTHRVRQVLCRI 243 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNIT 214 + Q +A +L LS L+++L+ E TS+ ++ + R A Q L + Sbjct: 244 L---PQGEPKRETLAQALHLSQRTLQRRLQEEGTSFQALLDDTRRELAEQYLAQPGMTLL 300 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + A L G++ S F F+ ++ +TP Y A+ Sbjct: 301 ETAYLLGFADPSNFYRAFRRWFDVTPSEYRAR 332 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 59/109 (54%) Query: 137 ALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 A+L + D + ++I+SD W L A S +S + L+++L ENT +S+I+++ Sbjct: 154 AVLGEGQSPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSD 213 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 RM A+ ++ + QVA GY S S F + FK +G++P + + Sbjct: 214 TRMNRALGLIHTTTLPMAQVALEVGYDSPSQFSARFKERFGVSPRHVRS 262 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 45/92 (48%) Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKN 212 R ++ I +R VA L LS S L K TS+S +TECR+R A +L + Sbjct: 159 RHMEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHLLRESDAK 218 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 + VA CGY T YF +F+ G+ P Y Sbjct: 219 VYAVAAACGYQDTRYFSKIFQKHMGMKPTEYR 250 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 6/171 (3%) Query: 80 WSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQ----SRF 135 W P H + L ++ Q P + L R LL S + R Sbjct: 161 WLSHDEPSYYHHYKDRLPIELVYGKTRDQIRFPGD-YLDRPLLMANPSAAQQAVLFCERE 219 Query: 136 IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVT 195 + + V R + Y++L VA+ L LS LK++LK +Y +I+ Sbjct: 220 LEDYRQREEADWVRQVRRAMVKQEGGYYSLEEVAAVLHLSVRTLKRRLKEHGANYHRILK 279 Query: 196 ECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 E R+ AV +L + VA GY + F F+ + G +P +Y + Sbjct: 280 EARLERAVALLKEGE-TVQTVAFQLGYQDPANFTRAFRRWTGCSPSDYRQQ 329 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 + I+ + Q +L V+ + +SP K K E T++ +TE RM A Q+LL Sbjct: 432 EKAKLYIRDNYQKDLSLEEVSRQVDISPYYFSKVFKEETGTNFIDYLTELRMSVAKQLLL 491 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +++ ++ + GYS +YF FK G+TP Y Sbjct: 492 ESERSMKEIGIMVGYSDPNYFSRSFKKNIGITPTEYKE 529 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 4/148 (2%) Query: 99 RLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSD 158 N ++ + + + + + L N E I + + + R I+ + Sbjct: 381 NFIENRELEEILKINDVDKIKFIFINTLKNLFE---NIKTINKEKMDTFIAKIIRFIEDN 437 Query: 159 IQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVA 217 L VA + +S K K ++ +T R+ A ++L + +I +V Sbjct: 438 FNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFIDYLTNLRVTKAKELLEDETVSIKEVC 497 Query: 218 QLCGYSSTSYFISVFKAFYGLTPLNYLA 245 GYS +YF +FK G+TP Y + Sbjct: 498 YKVGYSDPNYFSKIFKKATGMTPTEYRS 525 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 60/112 (53%) Query: 134 RFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQI 193 +++ + ++++ V II S W L VA + +S S LK+KL E TS+S I Sbjct: 194 ESYEIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDI 253 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 RM A ++L + N N+ VA CGY STSYFI FK ++ TP ++ Sbjct: 254 YLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 47/99 (47%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQML 206 + V + + Y +L VAS L +S L +KLK E TSY ++ R A L Sbjct: 240 LSQQVSNCLLNSPDGYPSLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWYL 299 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 L + Q+A+ GY TS F F+ ++G+TP + Sbjct: 300 LETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTPHAMRS 338 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 1/142 (0%) Query: 107 QQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLR 166 +Q + + L ++ L R + + I++ L Sbjct: 384 RQVPELSDYHDSAVLFEQGKNHLLRIVRHVQAWRNSHAKDMLYKAKEYIEAHYAEALTLE 443 Query: 167 IVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 A + LSP K K+ ++ VT+ R+R A L + ++ ++ GY Sbjct: 444 SAAEYVDLSPFYFSKLFKDRFGMTFIDFVTDVRIRKAKHFLKEGSLSLKEICYSIGYKDP 503 Query: 226 SYFISVFKAFYGLTPLNYLAKQ 247 +YF VFK GL+P Y + Sbjct: 504 NYFSRVFKKHTGLSPTEYRKES 525 >UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Y7_9BACL Length = 118 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAV 203 + ++V ++ L+++A + P+ K+ K S+ + RM+ A Sbjct: 12 KEIMEAVRLYLEQHYAEPIQLQMIAERFFIHPNYFSKRFKEKYGESFVDYLNSIRMKEAA 71 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +L N I ++++ G+ +YF SVF+ +YG TP Y +Q +K Sbjct: 72 ALLGETNLKIREISERVGFEDAAYFSSVFRKWYGETPKQYRERQLKK 118 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRY 201 + + + V I +L VA LS S L KK K + + + R++ Sbjct: 170 VDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQN 229 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A +LL NK+IT +A CG++ ++YF F+ G++P Y + Sbjct: 230 ACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNE 275 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 FLE ++ I + SS + I+ +L +A+ +PS L + Sbjct: 379 CFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFR 438 Query: 185 NE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + +S+ + + R+R A + L I+++ L GYS SYF VFK G+ P Y Sbjct: 439 QHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRY 498 Query: 244 LAKQRQ 249 + + Sbjct: 499 RRENAE 504 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 + LL V E +R S + + R IQ NL +A + LSP Sbjct: 376 SEELLEKVKVILQELTREDQRTGETGSSRIVQEIKRYIQEHYAENINLNALADQVYLSPK 435 Query: 178 LLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 L K E +Y+ + RM +A + L+ + I +VA+L GY+S FI VFK Sbjct: 436 YLSDLFKRETGENYTSYLLYVRMEHAKKYLMQFDLKIYEVAELTGYASPKQFIRVFKKEV 495 Query: 237 GLTPLNYLAK 246 G+TP Y + Sbjct: 496 GVTPGEYRNQ 505 >UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0ET05_9FIRM Length = 355 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 9/199 (4%) Query: 59 NRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELT 118 + +I+ +Y+ L V S+ V R E + + + + + ++ Sbjct: 151 SVDILREYIDQLYLEEHDVNIISKRLQEVAKAVVRISEELGIT--DTNELVVQMEKLKIK 208 Query: 119 RALLFTVLSNFLEQSRFIALLM------YILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 L + E + + +L L +V I+ +++ +L VA+ + Sbjct: 209 YLLYNNKHDAYNEIIKMVDILFDKMNIKGKLSEGGMKAVIDYIERNLKKGISLEDVANHV 268 Query: 173 CLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 +S L K K E ++ VT+ +M A +ML+ + + +A Y+ +YF Sbjct: 269 NISTYYLSKIFKKEMGVNFITYVTDRKMDLAKEMLVNTDIPVLNIALDLAYNEANYFSKA 328 Query: 232 FKAFYGLTPLNYLAKQRQK 250 FK GLTP Y K R + Sbjct: 329 FKKKTGLTPSEYREKYRNR 347 >UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family) n=3 Tax=Acinetobacter RepID=Q6FBV2_ACIAD Length = 347 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCR-IIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 L NFL+ + L+ Y ++ + R +I+ + L+ ++ L +S + L+++LK Sbjct: 215 LINFLKHTPHNLLVRYKNEDALGLLIRRHLIRHHPSEWPELKQLSHELHMSEATLQRRLK 274 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 EN SY + E R A++ L+ + ++++ + S F FK + G++P Y Sbjct: 275 AENMSYQALKNEIRCDIAIEQLINTKHTLNEISEALDFHDPSAFHRAFKKWMGMSPSAYR 334 Query: 245 A 245 Sbjct: 335 K 335 >UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BGF1_9BURK Length = 469 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 16/235 (6%) Query: 19 EVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDY-----LLFLNKN 73 V + A++ P + A + + ++ H+ II D + + Sbjct: 243 WVEHDGIASWLFPDPHEVALPDLDTALYRFLIDLQFAVHVT--IIKDVMGAWCVPARAQF 300 Query: 74 LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAE-LTRALLFTVLSNFLEQ 132 P + L V+ C + S P A +T A + + + L++ Sbjct: 301 AQPRPPHAALLADVLECPIAFDQPRHALGYPSAWLARAPQLANPITAAQVSSQCARLLDE 360 Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQ 192 R A V V + + + ++ +A SLC++ L++KL+ E TSYS Sbjct: 361 LRSQA--------DVTRRVYQELTRTPGQFPDIDAIADSLCITSRTLRRKLEAEGTSYSA 412 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++T R A+ L +I +A G+S F FK + G TP + K+ Sbjct: 413 LLTSVRKALAIDYLSTTTLSIDDIASTLGFSDAVGFRHAFKRWTGTTPSDVRRKR 467 >UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J9_9FIRM Length = 351 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 131 EQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTS 189 E ++ + SSV I+ +Q ++ +A LSPS + K S Sbjct: 228 EHRPQQTGVLPVNPSSVVYPAVVYIRDHLQQEITMKEMADLCHLSPSYFSRTFNKETGES 287 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + ++ R++ A ++LL K+I+Q+A+ GY + S+F +VFK G+ P Y + +++ Sbjct: 288 FVNYISSRRIQLAKELLLETGKSISQIAEEVGYDNISHFTAVFKRTEGIPPSVYRSSKKR 347 Query: 250 KVM 252 K Sbjct: 348 KKF 350 >UniRef50_C6D127 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D127_PAESJ Length = 534 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 + SV + I+ +++ + VA+ + L+P+ L + K E + + E +M Sbjct: 424 LESDSVVQKSVQYIKENVEEDISREDVAAHVGLNPAYLSRLFKKETGQNLIDYLIETKMA 483 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A Q+L ++ +AQ GYS+ S+F +FK YG+ P Y ++ Sbjct: 484 RARQLLDTTGMTVSAIAQQVGYSNFSHFTKMFKKQYGINPQEYRNVTKR 532 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 62/133 (46%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 AL+ + +Q L S +V + + + +L+ VA L LS L Sbjct: 266 ALVARLTIQQCKQDIQKLFLKRKNVDSAAKNVKEELYDEALGFLSLKQVAERLHLSERTL 325 Query: 180 KKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 +++L E TS+ ++ E R + A +L + +I Q+A+ GY+ S+F FK + +T Sbjct: 326 QRQLAKEQTSFQLLIAEVRRKQAEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVT 385 Query: 240 PLNYLAKQRQKVM 252 P Y +R K + Sbjct: 386 PKFYREVERYKTI 398 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 I + +L+ VA + ++P+ + K E +Y + VT+ ++R A+ +L Sbjct: 418 QRAISFIHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQNYIEFVTQAKLRKAMHLLR 477 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 I+++A GY YF +FK + GLTP Y Sbjct: 478 ETPAKISEIANEIGYEDIKYFNRLFKKWTGLTPSEYR 514 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 144 RSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202 R + V + + + + ++L +A + SP LK++L+ E T++ ++ + R A Sbjct: 259 RVGTSEMVRQYLTATPGNVPFSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMA 318 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +L + ++T+VA+ G+S S F FK +YG+ P Y + Sbjct: 319 ETLLGDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPPGTYRS 361 >UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Z3_9FIRM Length = 420 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTS-YSQIVTECRMRYA 202 + V V IQS + L VA+ SP+ L + S + + +TE R+ A Sbjct: 316 KMQVVAQVQEYIQSHLSERLTLADVAAVFNFSPNYLSQLFGKYGDSGFVEYITETRIAAA 375 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +ML + + ++A+ GY S YF VFK GL+P Y Sbjct: 376 KEMLEQGDLKVYEIAEKLGYESAFYFSKVFKKVTGLSPREYQQS 419 >UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BC36_9BACI Length = 515 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 1/148 (0%) Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ 160 A K + + E T + VL+ F+++ + + + ++ Sbjct: 365 AIQKKKYEYFKAVEDAGTASEALDVLARFIKEVDELLIPADNQNGITIKKIIEYMKEHYT 424 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 L A +PS L N S+ + + + R+ A ++LL I++++ L Sbjct: 425 EPITLTEAARHFHFNPSYLSSYFSAHNEGSFIEQLNKIRIEEASKLLLEGEATISEISGL 484 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 G+S SYF VFK GL+P Y K Sbjct: 485 VGFSDHSYFCRVFKKRTGLSPSQYKRKY 512 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 + + IQ L V++ + S S K E ++ + ++E RM A ++L Sbjct: 434 TAKQYIQEHYADPLTLEWVSNIVGFSGSYFSSLFKKETGQNFLEYLSEVRMNRAKELLRE 493 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 N ++ +V GYS YF FK GL P + Sbjct: 494 TNLSVAEVCVRVGYSDLKYFTKSFKKATGLKPGEFRK 530 Score = 41.1 bits (95), Expect = 0.033, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 199 MRYAVQMLLM---DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +R A Q + D + V+ + G+S SYF S+FK G L YL++ R Sbjct: 432 IRTAKQYIQEHYADPLTLEWVSNIVGFS-GSYFSSLFKKETGQNFLEYLSEVR 483 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 113 CEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 +A L A + +L+ +L + L+ R + V +++ D W++ VA SL Sbjct: 134 PDALLQHAAMGVLLALYLAGQAGVLLI--DRRDKWAEQVQQVLLLDPARNWSVSDVARSL 191 Query: 173 CLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVF 232 + S L++KL E+ S+ I+ E RM A+ L + +I ++A GY S S F S F Sbjct: 192 HIGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRF 251 Query: 233 KAFYGLTPLNYLA 245 + +GLTP Sbjct: 252 QQHFGLTPRRLRE 264 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 7/177 (3%) Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 L L + + A LA+ S + + A++ +L +++ Sbjct: 367 LKMKLLELNTLAARAALEGGADPEAVSDLALAS--STEFLTLDNLADMRERILERLMALV 424 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENT 188 + +A SS+ D + I+++ L VA + LSP K K + Sbjct: 425 AQ----VAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGL 480 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ +T+ R++ A ++LL + ++A GY YF VFK G TP + Sbjct: 481 NFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRK 537 Score = 40.4 bits (93), Expect = 0.058, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 199 MRYAVQMLL---MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + A + + + + +VA+ Y S YF +FK F GL ++YL K R K Sbjct: 439 IDRASKYIEANFSQDLTLEEVARQV-YLSPCYFSKLFKQFKGLNFIDYLTKVRLK 492 >UniRef50_UPI0001789612 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789612 Length = 405 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 145 SSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 S + ++IQ L A +L +SP L + LK E TS+ ++T+ R++ A Sbjct: 296 SPLVRRARQLIQEQYAVRELTLESFAQALQVSPVYLSRMLKKELGTSFITLMTQTRIQKA 355 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +Q+L +I +A+ GY S YF + FK G++P Y Sbjct: 356 IQLLNATELSILDIAERVGYDSQHYFSTAFKKVMGVSPNRYRK 398 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 62/132 (46%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 AL L++ L + +LL +S R V ++ + W+L ++ L +S S L Sbjct: 139 ALRRKELAHLLYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTL 198 Query: 180 KKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 +++L++EN + ++ R+ + + I +A CGY S S F FK +G+T Sbjct: 199 RRRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMT 258 Query: 240 PLNYLAKQRQKV 251 P + +++ Sbjct: 259 PSELRQTRLEEL 270 >UniRef50_UPI0001788EC5 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788EC5 Length = 524 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 131 EQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTS 189 E S + + + + IQ+ + LR +A+ SP+ L K E + Sbjct: 406 EISEMLKNRKSTKNGRLVEEIIENIQARMHENITLRDMANRFSFSPNYLGVLFKEETGHN 465 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +S V + RM A +L I ++A GY YF FK YG+TPL Y K Sbjct: 466 FSDYVIKLRMERARDLLKTTKLKIYEIASQTGYQYLPYFSRQFKEMYGMTPLEYRRKH 523 >UniRef50_Q0VP86 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP86_ALCBS Length = 339 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLK 184 LS FL++S I + + II ++ + + + + L ++P L+++LK Sbjct: 212 LSKFLKESLAQLFDGNIHNVGLPAQIRAIISNEYGNSFPDFTEICGKLNMTPQTLRRRLK 271 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 NTSY +I R +V L + +I ++A L G+S S F FK + G TP N+ Sbjct: 272 EANTSYQEIKDAIRKDASVYYLSKPDLSIDEIALLMGFSEASSFHRAFKKWTGKTPSNFR 331 Query: 245 AKQ 247 + Sbjct: 332 REH 334 >UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TXY8_MARAV Length = 346 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 2/125 (1%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKL 183 V S L+Q + + RS R V R+I + + +A +S L +KL Sbjct: 219 VYSAVLKQVNAVMARLQTRRSFSR-KVRRLISRQMATDRIDADTLARQCHMSRQTLYRKL 277 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 K E S+ +V + R A++ + D + ++A L G+S S F FK + G+ P + Sbjct: 278 KKEGMSFHDLVEQVRKDKALRYVADDQYALGEIAFLLGFSELSAFSRAFKRWTGVAPAQF 337 Query: 244 LAKQR 248 A + Sbjct: 338 RASHQ 342 >UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=Bifidobacterium RepID=A1A117_BIFAA Length = 248 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKN 212 I + + I+A + L+P+ L + K E T+ SQ +T+ RM A ML + Sbjct: 146 YIHYHLHEKITVPILAEHVHLNPTYLSELFKRETGTAISQYITDKRMEAAENMLKYSEYS 205 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVMW 253 ++AQ+ Y S S+F VFK G+TP Y K Q +W Sbjct: 206 FDEIAQILAYRSQSHFSKVFKKHSGMTPGEYRTKYAQNGIW 246 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 A + +LS + I L + + R I + Q +L +VA + +SP+ Sbjct: 147 AYISLILSLLVRNRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYY 206 Query: 180 KKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 KK K + + +T+ R+ A ++L + N+T++A CG++ +YF F+ +GL Sbjct: 207 SKKFKQITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGL 266 Query: 239 TPLNYLAKQRQ 249 +PL Y +Q+ Sbjct: 267 SPLQYRKRQKN 277 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 119 RALLFTVLSNFLEQSRFI-----ALLMYILR--SSVRDSVCRIIQSDIQHYWNLRIVASS 171 R LL LS EQ+ + A L+ ++ V R++ + H+ ++ A Sbjct: 205 RVLLELPLSFANEQAAALCEQQCAALLGQMQAVQGFTGQVRRLLANAPGHHPSIEDAAGK 264 Query: 172 LCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 L +S L+++L E T+Y ++V + RM A L I +VA L GY+ S F Sbjct: 265 LAMSERSLRRRLSEEGTTYKEVVLDFRMELASSYLRGREMTIQEVAFLAGYADASNFHRT 324 Query: 232 FKAFYGLTPLNYLA 245 F +YG TP + A Sbjct: 325 FSRYYGATPGEFRA 338 >UniRef50_B7ACV0 Sensor protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7ACV0_9BACE Length = 1324 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 111/265 (41%), Gaps = 19/265 (7%) Query: 5 SSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIN 64 S E T V V ++ + K+ LAA+ + I+ IT II+ Sbjct: 1060 SREKVKYRKTNYSVLVIDDDDELRSFLKDNLAAYYHVDVAIDGVEGRKKAITQQPDIIIS 1119 Query: 65 DYLLFLNKNLTCVKPWSRLAT----PVIACHSRTPEVFRL--AANHSKQQPSRPCEAELT 118 D ++ + +K + A P+I S+ R+ + +P E Sbjct: 1120 DVIMPNMDGIQLLKELKKNANTSHIPIILLTSQVEFSNRIEGLVQGADGYLCKPFNTEEL 1179 Query: 119 RALLFTVLSNFL-----------EQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLR 166 L+ +++N + ++ + + + ++ + + II ++ + N+ Sbjct: 1180 MVLITNLIANRVRLKGKYSGSQTQEGKIAPVELQGNDEALMERIMNIINENLSNPNLNVE 1239 Query: 167 IVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 ++ + +S + L +++K T+ S + R++ A +L + +ITQ+A G++S Sbjct: 1240 MLTQEIGISRTHLHRRMKEMTGTAPSDFIRNLRLQQATVLLENKDLSITQIAYAVGFTSQ 1299 Query: 226 SYFISVFKAFYGLTPLNYLAKQRQK 250 ++F S FK YGL+P+ Y R + Sbjct: 1300 THFSSAFKKVYGLSPMEYAQSNRNR 1324 >UniRef50_UPI0001C35C03 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C03 Length = 301 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 1/139 (0%) Query: 108 QPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI 167 Q S +AE L ++ + FL+ + + + +++ NL Sbjct: 157 QISSLQKAETLTLLKRSLYAFFLDLGKELNCQKEGNGRDIMTDCGEYLENHYMDEINLES 216 Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 VA +PS KN +++S+ + RM A ++LL + +A L GY + Sbjct: 217 VAEKYHFNPSYFSTLFKNTYKSTFSEYLIRIRMEKARELLLTTESRVRDIAVLTGYRDAN 276 Query: 227 YFISVFKAFYGLTPLNYLA 245 YF+ FK +Y +TP Y Sbjct: 277 YFVRAFKRYYEMTPEEYRK 295 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 + + + ++ L+ ++ L LSP+ L + K + + VTE RM A Sbjct: 151 NLLVQKAIQYVEVHYGGRITLKDMSEELHLSPNYLCELFKRHTGKNLMEYVTEYRMMKAR 210 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 L ++ VA++ GY YF S FK YG+TPL Y K+ Sbjct: 211 NYLNHVEYKVSDVAEMVGYKEAKYFSSTFKKMYGMTPLEYRNKR 254 >UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G3_9FIRM Length = 532 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 9/190 (4%) Query: 67 LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQ------QPSRPCEAELTRA 120 F+ + P + ++ + + R + S EA + Sbjct: 338 NRFIGRFYETRLPIGQYQLYLMELTAELVRLARAYQLDTADVFGPDFAASLRLEAFDSLD 397 Query: 121 LLFTVLSNF-LEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSL 178 L LS L S I + + + I ++ ++ L +SP+ Sbjct: 398 ELKARLSELCLRISELIRRERSNSTRGIAEGAKQFIAEHFSDPDISVEMLCDHLHVSPAY 457 Query: 179 LKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 K E S+ +T RM AV++L +++ GY+ +YF VFK +G Sbjct: 458 FSTLFKKETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGYTEPNYFSYVFKKQFG 517 Query: 238 LTPLNYLAKQ 247 ++P Y + Sbjct: 518 MSPTKYRGSR 527 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 9/169 (5%) Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE--QSRFIALL 139 + + + E++ + + + + ++ +L LE + FI Sbjct: 122 SVKDTIKELCEQLIEIYEAKKSERELNITTQIKTKII------LLQFILEMWEKGFIVEN 175 Query: 140 MYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECR 198 R+ V + IQ + +L+ LS + + K + + SQ V R Sbjct: 176 NTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYFKEHFHITLSQYVAYLR 235 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + YA Q+L + ++T+ A GY + SYFI FK YG++PL Y KQ Sbjct: 236 LEYAKQLLQDTDISVTEAAMRSGYQNISYFIRSFKKTYGVSPLKYRKKQ 284 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 11/188 (5%) Query: 66 YLLFLNKNLTCVK----PWSRLATPVIACHSRTPEVFRLAANHSKQ---QPSRPCEAELT 118 ++ LN+ L + +S +++ ++ S ++ Sbjct: 49 FIEKLNQQLNFRELCDGVFSGNVAVSFTLRPGIVDIYSALKAMVEKGCGNRSNDELLDIN 108 Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 LL+ +L +F EQS A SS+ + +I D+ W L+ +A + +S S Sbjct: 109 SMLLY-LLMHF-EQSASQAETRS--YSSLSSRIRALISKDLTKPWTLKEIAKLVYMSEST 164 Query: 179 LKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 +K+KL E T+++ ++ R+ A +M+ + +++ +A+LCG+ SYF + F+ YG Sbjct: 165 VKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACFRKEYGA 224 Query: 239 TPLNYLAK 246 TPL Y + Sbjct: 225 TPLAYRKQ 232 >UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LII8_9FIRM Length = 502 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 18/207 (8%) Query: 58 INRNIINDYLLFLNKNLTCVKPWSRLATP-----VIACHSRTPEVFRLAANHSKQQPSRP 112 ++ Y + + + + A V + + F L +K Sbjct: 298 FTEFNMHLYQAKGYQRYELLDEFLKNAASWRILAVESLCGLCRDTFELLEFEAKGNGISL 357 Query: 113 CEAELTRALLFTVLSNFLEQSRFIAL----------LMYILRSSVRDSVCRIIQSDIQHY 162 ++ R + +S LE++R I L +S I + Sbjct: 358 TGTDILREQMEECIS--LEEARRIMEAFAGQCHLTELQNAPKSKNIQLAVEYINAHYAEQ 415 Query: 163 WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 +L VA+S+ L+P + K E ++ +T+ R+ +V +L + +AQ G Sbjct: 416 LSLEQVAASVYLNPDYFSRAFKMETGQTFVNYLTDVRLSRSVWLLENTALRVQMIAQQVG 475 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQR 248 Y + SYF ++FK YG++P Y K++ Sbjct: 476 YYNASYFSTIFKKKYGMSPYEYRRKEK 502 >UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR09_9CLOT Length = 568 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 5/157 (3%) Query: 95 PEVFRLAANHSKQQPSRPCEA---ELTRALLFTVLSN-FLEQSRFIALLMYILRSSVRDS 150 P +L + + EL RA L + L+ +R ++ +++ S + Sbjct: 402 PLSIQLKEEGIPPLAALTLDEAFLELDRAEDSAALRDVLLKTTRSLSAVLHGTSSDFVER 461 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 I I +L +A LSPS + K + + + ++ C+M YA Q+L Sbjct: 462 TKEYIFEHIGQDLSLEDIAEHFYLSPSHFSRTFKAQAGETLIRFISRCKMEYAAQLLSNT 521 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 N I V + GY S +F +FKA+ G+ P Y + Sbjct: 522 NLKIYDVCEQVGYKSLRHFNKLFKAYTGMQPSGYRQR 558 >UniRef50_Q1LEQ7 Transcriptional regulator, AraC family n=6 Tax=Burkholderiales RepID=Q1LEQ7_RALME Length = 400 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLK 184 L FL ++ L+ Y S + + + ++S + +L +A L L+P L ++L+ Sbjct: 262 LREFLLETPHKLLVRYRDNSCLAERIRLHLRSHLDDELPSLEQMAQMLRLTPQTLSRRLR 321 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +E Y I R A+ ML ++ QVA G+S S F FK + G+ P Y Sbjct: 322 DEGRGYQNIKDNLRRDAAIGMLEHSCLSLQQVALRLGFSELSTFHRAFKKWTGVAPGEYR 381 Query: 245 AKQRQ 249 + Q Sbjct: 382 QRGMQ 386 >UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=Burkholderia RepID=Q390J5_BURS3 Length = 339 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 49/94 (52%) Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM 208 +S+ RI++ D++H +L +A+ LC+S L+++L ++ SY ++ R + A +L Sbjct: 241 ESIERIMRRDLRHAPSLAEIAAQLCMSERTLRRRLADQGVSYQTVIDTIRRKRAFTLLSN 300 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 +I VA G+S F FK + G P Sbjct: 301 PRLSIEDVAHEVGFSDAHNFRRAFKRWTGHGPRE 334 >UniRef50_C6D8S9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8S9_PAESJ Length = 534 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 S+ V I+ ++QH N +A + L+P+ L + + E S + + + RM ++ Sbjct: 427 SNTIAKVQGYIEENLQHDLNREEIARHVYLNPAYLSRLFRKETGKSLTDYMVDRRMFRSI 486 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + L + N I+ +A GY+S S+F FK G+TP +Y K + Sbjct: 487 RELKLTNHKISDIAISVGYASFSHFSKQFKKSTGMTPQDYRKKYQN 532 >UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R2_9GAMM Length = 342 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%) Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE 186 S L+Q + + S D V ++ + ++ ++ +A + +S L+++LKNE Sbjct: 219 SRHLQQQCQMLIAKMTSHGSFVDEVRLLMLARPGYFPDIDALAGKIGMSARTLRRRLKNE 278 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +++ +++ E R A + L + + +++ L GY+ F FK + GL+P + Sbjct: 279 GSTFREVLEEIRYGLAREYLANTHLPMDEISLLLGYTEAGNFSHAFKRWSGLSPSLWRQH 338 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 1/104 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 + I NL +A+ + L+PS K E S+S + + R+ + Sbjct: 308 NPVLIQKCISYINEHYNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQS 367 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +L + +I ++A G+ SYF VFK +TP Y Sbjct: 368 KLLLKNTDSSIVEIALEVGFEDQSYFSKVFKNLTKMTPKQYRQN 411 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%) Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 SV + I + + +AS + L+P L + K E S S + + R+R Sbjct: 423 HSPSVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRLRI 482 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 A ++L + ++ VA GY++ S+F +FK + G+ PL Y Q + Sbjct: 483 AAELLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQESR 531 Score = 43.4 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 29/158 (18%) Query: 94 TPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCR 153 TP++ L +Q ++ +LS+ L RF + + + Sbjct: 354 TPQLLALFIQDFQQMVHYVL--QIKGIQAHQLLSDSLSVERFARAGRSAKDALI--WIRH 409 Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNI 213 I+ + + +L S + + + + + L E + Sbjct: 410 IVGKSLDYMNSLEHSPSVVEQAKTYIHQHLAEE------------------------ISR 445 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 +A Y + Y +FK G++ +YL +QR ++ Sbjct: 446 EDIASHV-YLNPDYLTRIFKRETGMSISDYLLQQRLRI 482 >UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_9BACE Length = 1382 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 17/149 (11%) Query: 117 LTRALLFTVLSNFLEQSRFIALL---------------MYILRSSVRDSVCRIIQSDI-Q 160 + +LL + ++N LE + IA L + + + + + RII+ ++ Sbjct: 1234 FSASLLKSRVANLLEGRKKIASLISSSTHLKQSIIKESLNKIDNEFIERITRIIEENLMD 1293 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 ++ +A L +S S L +K+K S + + + R+R A Q+LL NI+++A Sbjct: 1294 EKIDVPTIAQELSMSYSSLYRKIKALTGMSTGEFIRKLRLRKAEQLLLSGKYNISEIAHQ 1353 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 G +S SYF FK YG++P Y+ + + Sbjct: 1354 VGLNSVSYFRECFKEEYGMSPSEYIKQLK 1382 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 A + VL + LE +R+ +L + V +I+ D + +A +L ++ L Sbjct: 363 AEIREVLHHALEATRYDQVLKQHNPNI--QKVLQIVLKDYAQDITISSIADTLHMNAMYL 420 Query: 180 KKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 + K E N S+SQ + R++ A +LL N NI ++A+L GY+S+ YF FK G+ Sbjct: 421 GQLFKKETNKSFSQYLNHFRIKEAQNLLLKSNHNINEIAELVGYTSSGYFYKNFKKECGI 480 Query: 239 TPLNYLAKQRQK 250 +P Y + ++ Sbjct: 481 SPKEYRERYLKQ 492 >UniRef50_A9U743 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U743_PHYPA Length = 244 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 10/183 (5%) Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSN- 128 L + R+ + + R + +R ++ E +L + F+ + + Sbjct: 63 LKEQRAGTGTIVRVCSQLEDMACREVQEYREIRG---KEARARLETQLRACMSFSDMEDC 119 Query: 129 FLEQSRFIALLMYILRSSV----RDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK 184 F+E R +Y LRS + + V R I + L +A+ + L+PS L K K Sbjct: 120 FVEAFRSALEKVYGLRSEMGGKAVEIVKRWIAEHYSEHAELNTLAAMVYLTPSYLSKLFK 179 Query: 185 NE-NTSYSQIVTECRMRYAVQMLLM-DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 E + ++ +T+ R++ A ++L N + Q+ GY+ +YF +FK G+TP Sbjct: 180 QETGLTLTEYITDVRLKNAKRLLRTEPNMKVHQIGAEVGYADPAYFNKLFKKVVGVTPNE 239 Query: 243 YLA 245 Y Sbjct: 240 YKK 242 >UniRef50_C6JDJ0 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDJ0_9FIRM Length = 517 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 71/187 (37%), Gaps = 20/187 (10%) Query: 80 WSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV--LSNFLEQSRFIA 137 + ++ + S P++F+ + R E L L + L N L +S++ + Sbjct: 329 FEKITEVLSEHKSVQPDIFKRKIVFFFFRILRYMEPYLKAEHLSELNALDNRLIESQWYS 388 Query: 138 LLMYILRSSVRDSV-----------------CRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 L +++ + R I+ Q +L +A+ + S Sbjct: 389 ELKKRSAELIKNIIAFREIADSQETDPLDESRRYIEEHYQDEISLEQIAALYHFNASYFS 448 Query: 181 KKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 K S+S+ +++ RM A +L + + ++A GY +YF FK + +T Sbjct: 449 TLFKQRFGISFSEYLSDIRMEKAENLLKTSSDKVRKIALEVGYKDPNYFNRAFKKRHNMT 508 Query: 240 PLNYLAK 246 P + + Sbjct: 509 PEEFRKR 515 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 2/142 (1%) Query: 111 RPCEAELTRALLFTVLSNFL-EQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 + + A + FL E +A + + + I+ L ++ Sbjct: 72 KAIDEARDAAGALQAFNAFLSEVEPLVAARVPLPSDGNMKLLLDYIEEHYGEPLTLSSLS 131 Query: 170 SSLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 +PS L N +S+ + R+ A ++L D I+++ GYS SYF Sbjct: 132 RHFHFNPSYLSSYFSAHNDEGFSEYLNRVRIAKAKELLRSDGLPISEIGSRVGYSDPSYF 191 Query: 229 ISVFKAFYGLTPLNYLAKQRQK 250 VFK GL+P Y +Q K Sbjct: 192 TKVFKKQMGLSPREYRRQQLAK 213 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 + + + + F LS F F+ LL + S V V II S W ++ ++ Sbjct: 99 QKTLPQQFSEQMFFACLSIFSTHRGFMFLLFRCINS-VALKVRYIICSSPSRAWRVKDIS 157 Query: 170 SSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFI 229 +SL +S SLLK+KL+ E S+SQI+ + RM A Q L+ ++ Q+A CGY+ST YFI Sbjct: 158 NSLYMSESLLKRKLQEEKVSFSQILLDIRMHNARQ-LISSKLSVNQIAIRCGYASTPYFI 216 Query: 230 SVFKAFYGLTPLNYLAKQ 247 SVF+ ++G+TP + Q Sbjct: 217 SVFREYFGITPHQMMINQ 234 >UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGD7_RHOVA Length = 354 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQS-DIQHYWNLRIVASSLCLSPSLLKKKLK 184 L FL Q+ L+ Y + + R +++ D + +A+ LS S L+++L Sbjct: 233 LKPFLRQAPANLLVKYRGWQTWSALIRRRLRTLDPASWPTFDEIAAEFHLSSSTLRRRLD 292 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +E SY I+ + R A+ +L + I +A G++ +S F FK + G++P NY Sbjct: 293 DEGLSYRVILDDLRRDLAISLLSRTDATIQSIAFDLGFTESSAFHRAFKKWTGVSPGNYR 352 >UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_BACV8 Length = 1340 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 78/150 (52%), Gaps = 18/150 (12%) Query: 117 LTRALLFTVLSNFLEQSRFIALLM----------------YILRSSVRDSVCRIIQSDIQ 160 + LL + ++N LE + IA L+ L + + +II+ +++ Sbjct: 1191 FSAKLLHSRINNLLETRKKIASLLALADIQPKQESAVSSLNKLDNEFLQKITQIIEENLE 1250 Query: 161 -HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218 ++ +A +C+S S L +K+K + S ++ + + +MR V++L+ I+++A Sbjct: 1251 MEKMDIAFIADKMCMSHSTLYRKIKGLTDMSANEFIRKVKMRKGVELLMSGQYTISEIAY 1310 Query: 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + G+SS +YF FK YG++P +Y+ +++ Sbjct: 1311 MIGFSSVAYFRQCFKDEYGMSPSDYVKQKQ 1340 >UniRef50_C0YRY4 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YRY4_9FLAO Length = 304 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 97 VFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD----SVC 152 + R ++K + + + ++ L L++ + L I +D + Sbjct: 145 LLREMIFYTKDWDGKITKNDHSKYYFLKALKGVLQEKKHKHLAFPIQHPFPKDETLLKIA 204 Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNK 211 R I ++++ + A +S L +K K +Y + + R+ +++++L Sbjct: 205 RYIHANLEKPLTIESTAKEFGMSTRTLSRKFKEILGMNYVRFLRALRITRSLELMLEGKY 264 Query: 212 NITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 N+ ++A + GY+S S F ++FK G+ P Y K R Sbjct: 265 NMYEIAMMVGYNSLSSFSNIFKKIIGVPPTEYQHKLR 301 >UniRef50_A9KJM4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KJM4_CLOPH Length = 517 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 V R + + L VA L +SP + K + +Y +T R++ A + L+ Sbjct: 416 KVLRYVDTHYDEDITLEEVAGILNISPQYFSRIFKEKMGVTYVDYLTNIRIKKAQEWLIY 475 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +KNI ++ + GY +YF VFK G+TP ++ + ++ Sbjct: 476 SDKNIQEICYMVGYKDPNYFSRVFKKTVGVTPKQFVENKGKR 517 >UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1P7P5_BACCO Length = 292 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 + IQ I L VA + LSP K K E ++ V +M A ML Sbjct: 190 QALQYIQKHIHQPVTLEEVAGHVYLSPYYFSKLFKKETGETFVSFVNRQKMNLAKDMLAN 249 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 D+ ++ +A G+ SYF VFK +Y TP +Y A R+K Sbjct: 250 DDLPVSYIAHSLGFREISYFSKVFKRYYQTTPTSYRAMSRKK 291 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 55/113 (48%) Query: 138 LLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTEC 197 L+ +R+ V V IQ L VA L +SP LK++L+ TSY QI Sbjct: 238 LVRLNVRNDVAGMVRLQIQDWEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDSS 297 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 R R A+ L + ++ +A+L GYS S F FK++ +TP + + Q+ Sbjct: 298 RFRRAIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEFRQRLSQE 350 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 6/222 (2%) Query: 30 LPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIA 89 P N + + + + I + + + L + V +S V Sbjct: 176 FPDNMILILVSVQSSYDKKIDKGTVTEEIYKITLEKIIRELMEPYHTVSVFSSKYEDVAI 235 Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAE---LTRALLFTVLSNFLEQSRFIALLMYILRSS 146 + PE F+ + + Q + R F L + + R M R Sbjct: 236 VMEKLPENFQEFSADLQLQTEEKVGGKCFITARECTFETLPDISREMRREVQKMQECRPI 295 Query: 147 VRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 V+D+ + I ++ Q +LR VA ++ + S + + +K E S+ +T R+ AV+ Sbjct: 296 VQDA-RKYIYANYQDRNLDLRQVAHAIGCNSSYISRIMKQELGISFKDFLTRLRISQAVR 354 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++ +I Q+A+ GYS+ YF + FK G++P + Sbjct: 355 LMEDRELSINQIAEKVGYSNQHYFSAAFKNCQGMSPSEFRKN 396 >UniRef50_C6CZ56 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ56_PAESJ Length = 519 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE 186 F E S + + + + D++ + ++ L+ VA+ +P+ L K E Sbjct: 396 RRFFELSELLYVKRQKQKRKLFDNIMAFVDERLEQKITLKEVAAHFDFTPNYLGTLFKEE 455 Query: 187 -NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 T +S + E RM ++L + ++A+ GY + YF FK F G+TP Y Sbjct: 456 TGTLFSDWLNERRMDRVRELLADPCLKVYEIAERVGYKNIIYFNRQFKQFTGMTPGEYRK 515 Query: 246 KQR 248 K + Sbjct: 516 KHK 518 >UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vibrionales RepID=C9NYS3_9VIBR Length = 349 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 11/172 (6%) Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFI----- 136 + P E+FR + S+ E E + L L + + + Sbjct: 172 KFPYPKPEYGDLYNELFRCQI----EFDSQELEWEFDASQLHNPLPSANAMTLQMCLKSC 227 Query: 137 --ALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIV 194 L ++++ + +I Y ++ ++S L +S L++ LK E T Y QI+ Sbjct: 228 DEMLAKVSSTPNLKEKITQIFIERPGRYPSIEALSSELGMSSRTLRRHLKAEQTGYQQIL 287 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 R A L+ NI ++++ G+S ++ F F+ + G +P + + Sbjct: 288 DHVRFHLAKYYLVSTGLNIEEISERVGFSDSANFRHAFRKWNGCSPKAFRNQ 339 >UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1T3_9CLOT Length = 361 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 14/159 (8%) Query: 89 ACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 C + P A K P + RA + + E + ++ Sbjct: 214 LCETGHP------AEKVKALPPEQLLPFMERA-VMGCVRLIGETRN------RSCSALIK 260 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 ++ I ++ + + L+ +A +L +SP+ L + K E T + + + E RM A +L Sbjct: 261 SALEEIDRNYFRSEFTLQTLAETLMVSPNYLSARFKEETGTGFVRFLNEKRMERAKGLLA 320 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++ I +VA CG YF +FK + G+TP Y K Sbjct: 321 DVSRKIYEVACQCGIEDVRYFTRLFKEYAGMTPKEYRDK 359 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 5/156 (3%) Query: 99 RLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV----RDSVCRI 154 + + S +P + +L +L +S Q ++ + V Sbjct: 92 KAVQHGSFDYLLKPIDPDLLHEVLTKAVSAVQLQQPKGEVVAEDYKDQTITITMRKVEEY 151 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNI 213 ++ L+ +A + +S + +K K + + + + + RM+ A+++L N + Sbjct: 152 LKEYYHEDIKLQDIADTFYISREYISRKFKEHFHLTITDYLVDLRMKKAMELLDRTNLKV 211 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 ++A+ GY YF VFK F G+TP +Y K + Sbjct: 212 YEIAEKVGYVDDKYFRKVFKKFAGVTPNDYRQKDKN 247 >UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NBQ5_EUBSP Length = 563 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 6/175 (3%) Query: 80 WSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALL 139 + + + V++L N + S EA L L + F++ R I L Sbjct: 386 YQMYILEIFTVLMKLVNVYQLDTNVVFKGASDYIEAVLGLHSLEEIKDWFIQACRQIGTL 445 Query: 140 MYILR----SSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQI 193 + R + + + + + +++ + SL +SP+ K E ++ Sbjct: 446 IQKERMASGKMLVEKARQYVDENYADAEFSVETLCESLHISPAYFSTIFKKEAGINFISY 505 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +T+ RM+ A+++L ++ +A GYS +YF FK G++P Y R Sbjct: 506 LTDVRMKEAMRLLDETDEKTYMIAAKVGYSEPNYFSYAFKKQVGVSPSRYRKGLR 560 >UniRef50_A8S4U5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4U5_9CLOT Length = 407 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 11/226 (4%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIN--DYLLFLNKNLTCVKPWSR 82 + K L A + +L+ + + +R+I+ D L + R Sbjct: 186 EHRYYYEKLLLQEVAQGSQ--DLALKYYRQFSQESRSIVRTEDPLRTAKNLGFSLNTMLR 243 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 + H ++ + + EAE ++ + + F+ ++R Sbjct: 244 KSAETTGIHPVYLDIISSNFAMLIENANSIREAEECKSQMISAYCRFVRKNRL------D 297 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 S + I+ + L +A + +SPS L + E S S +T+ R+ Sbjct: 298 QYSPLVRKAVTYIRIHLADQLTLAGIAKGIRVSPSYLSRLFNRETGDSVSNFITKARVEK 357 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A +L +I +A G+ +YF FK + +TP Y A Sbjct: 358 AAGLLSFSGMSIQNIAFYVGFGDLNYFSRCFKKYKKMTPTEYRASS 403 >UniRef50_B3QHQ0 Transcriptional regulator, AraC family n=4 Tax=Rhizobiales RepID=B3QHQ0_RHOPT Length = 300 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 1/150 (0%) Query: 100 LAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI 159 + A+ S +P+ +L L + + A L L + VRD + ++SD+ Sbjct: 148 VEASDSGDRPNALLAEQLAYTLALHLTDRYSAPRSAPAELSAPLEAPVRDRIAEFVRSDL 207 Query: 160 QHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218 L +A +SPS + K + + V E R+ A ++L + I ++A Sbjct: 208 GAPITLAAMAEVAGMSPSCFIRSFKRSTGMTPHRFVVEQRVAAARRLLETSDLPIVEIAL 267 Query: 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 G+SS S+F F+ G +P Y QR Sbjct: 268 GVGFSSQSHFGVAFRQVTGESPARYRRLQR 297 >UniRef50_C4FY31 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY31_9FIRM Length = 552 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 12/170 (7%) Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTR------ALLFTVLSNFLEQSRFIALLMYILRS 145 T V R++ N + Q S E+ +++ A + ++ FL S+ + LL+ R Sbjct: 378 ELTSRVIRISQNLTGIQNSSLIESFMSQMVASNQASVADLMQTFLAHSKKLLLLIQSERQ 437 Query: 146 SVRDSVC----RIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 ++++S+ R++Q Q + + +A + +SP+ L E S+ + + + RM Sbjct: 438 TLKESLTQQGLRLMQQHYQDPLFTGKRLAQLMHVSPNYLSSLFTRETGQSFKEHLIQIRM 497 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++LL + + +VA GY+ T YF K ++GL+P ++ Sbjct: 498 NKAKELLLTSSAKVQEVALAVGYTDTHYFSYSTKRYFGLSPRQIREAAQE 547 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 95/197 (48%), Gaps = 17/197 (8%) Query: 55 ITHINRNIINDYLLFLNK----NLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPS 110 I IN +I++ YL +K +LT V + L A R + + + Sbjct: 50 IFDINHSIVSQYLEIQHKLTRTHLTDVPLYLSLEPNNPALAEALITSQRFSGDTT----- 104 Query: 111 RPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVAS 170 L+ LS F R + L L SS+ V IIQ+DI W L +A Sbjct: 105 -------DMFLMMACLSLFESDERILLFLSGCL-SSISAKVRAIIQTDISASWTLGAIAL 156 Query: 171 SLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFIS 230 L +S SLLK KLKNE +S+++ E RMR AV ML + VA+ CGYSS SYFIS Sbjct: 157 RLHMSESLLKIKLKNEGHMFSRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFIS 216 Query: 231 VFKAFYGLTPLNYLAKQ 247 VF +YG P Y+++Q Sbjct: 217 VFHRYYGFPPDRYVSRQ 233 >UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B2JV94_BURP8 Length = 372 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 +T A + T + LEQ R+ A + V + + + ++ +A SLC++ Sbjct: 242 ITAAQVSTQCARLLEQFRWQAGITR--------RVYQELTRTPGRFPDIEQIAESLCMTS 293 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 L++KL+ E SYS+++T R AV L ++ +A G+S F FK + Sbjct: 294 RTLRRKLEAEGASYSELLTGVRKALAVDYLKTTALSVDDIALTLGFSDAVSFRHAFKRWT 353 Query: 237 GLTPLNYLA 245 G TP + Sbjct: 354 GKTPNDVRR 362 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 77/132 (58%) Query: 114 EAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLC 173 + + + L ++S F+ + L ++ + ++ V II SD+ W+ VA L Sbjct: 160 DHDYSYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLF 219 Query: 174 LSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 +S S LK+KL E S+S+I + RM A+++L M NI+QVA +CGY + SYFI++FK Sbjct: 220 MSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFK 279 Query: 234 AFYGLTPLNYLA 245 + +TPL+++ Sbjct: 280 RHFKITPLSFMR 291 >UniRef50_Q1GLT5 Transcriptional regulator, AraC family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLT5_SILST Length = 339 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 10/219 (4%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLIT---HINRNIINDYLLFLNKNLTCVKPWSRLATPV 87 P ++ + + L N + + +++ + ++ + +L +P V Sbjct: 123 PSVFMEVVQGGDPRLGLRMTNELALAATMSLSQEVSSEDFSPVAVHLMTERPEV---DDV 179 Query: 88 IACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV 147 H R P F A + L +S F E L RS + Sbjct: 180 YHAHFRCPVHFG---ADHDALEVATTAAVRSNRLSDNGMSRFFETHLDNQLSQISDRSEL 236 Query: 148 RDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQML 206 + I + L +A + +S L+++L E +Y +V+ R + Q+L Sbjct: 237 EQGILDQIGEALSEGVPTLAEIAGCMGMSSRTLQRRLSAEGLAYQDLVSSARKSLSEQLL 296 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + + ++A L G+S S F FK ++ TP NY Sbjct: 297 RRTDYALAEIAFLTGFSDQSTFTRAFKRWHQQTPANYRR 335 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 117 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKL 183 +L L+ + + I ++ ++ + + L LS + Sbjct: 408 LLERCLKLRELLGRQRTDSAWKTVEQAKAFIAANYADCDLSVESMCAHLHLSATYFSALF 467 Query: 184 KNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 K E S++ VTE RM A +ML ++ +A+ GY+ +YF VFK +G+TP Sbjct: 468 KRETGQSFTAYVTELRMDQAARMLRDTDEKTYLIAEKTGYTDPNYFSYVFKRHFGVTPSK 527 Query: 243 YLAKQR 248 Y A QR Sbjct: 528 YRAGQR 533 >UniRef50_B9MLQ2 Two component transcriptional regulator, AraC family n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ2_ANATD Length = 519 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMR 200 I+ + + I + L ++S+ +P K K S+ +T+ R++ Sbjct: 407 IINNDSINKAIEFINQNYSEEITLSQISSTFNFNPYYFSKLFKKYTGVSFKTYLTKLRIQ 466 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A Q+L +K+I +++ G+S +YFI FK F G+TP + + Sbjct: 467 KACQLLKNTSKSIKEISFAVGFSDPNYFIKAFKKFTGMTPSAFRSSS 513 Score = 41.1 bits (95), Expect = 0.031, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMD---NKNITQVAQLCGYSSTSYFISVFKAFYGL 238 T + QI+ + A++ + + ++Q++ + + YF +FK + G+ Sbjct: 396 LFSKAKTKHEQIINNDSINKAIEFINQNYSEEITLSQISSTFNF-NPYYFSKLFKKYTGV 454 Query: 239 TPLNYLAKQR 248 + YL K R Sbjct: 455 SFKTYLTKLR 464 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 116 ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS 175 E T+A L L+ + + LL ++ + + R + + L VA +S Sbjct: 125 EATQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMS 184 Query: 176 PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 + + +KL E S+ Q++T+ RM +A+ +L + + A CGY S S F + FK Sbjct: 185 RASMARKLAAEGRSFRQLLTQVRMSHALTLLQQGLVPL-ETALACGYDSPSRFAARFKQE 243 Query: 236 YGLTPLNYLA 245 +GLTP YL Sbjct: 244 FGLTPYQYLR 253 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 I+ + +L VA L ++P L E ++S + + R+ +A ++L Sbjct: 420 RAINYIREHYKEGISLEEVAGRLGITPEYLSTLFNREMGENFSTFLRKFRISHAKRLLKG 479 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + + ++A+ GY+ YF VFK G++P +Y + Sbjct: 480 TDMKVYEIAEEVGYTDPKYFARVFKEELGISPGDYRQQ 517 >UniRef50_Q88GH1 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas RepID=Q88GH1_PSEPK Length = 362 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQS-DIQHYWNLRIVASSLCLSPSLLKKK 182 L FL + ++ + ++ + V R +++ + L +A +S S +++ Sbjct: 209 AALKTFLRSAPQGLVIRFRNQNGLVAEVYRHLRALRYGQWPTLAALAQQQGISASTFRRQ 268 Query: 183 LKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 L+ E SY QI E R A + L +I ++A+ G+ S F FK + G +P + Sbjct: 269 LEREGRSYQQIKDEVRRAMAFERLREGALSIAEIAEQAGFQEPSAFHRAFKKWTGQSPGS 328 Query: 243 YLAK 246 Y A+ Sbjct: 329 YRAR 332 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 S E E + T++ +++EQ R+ + +C + ++ Q ++L VA Sbjct: 131 SAESEPESPGMIYLTLILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVA 190 Query: 170 SSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 + LSP L + + S + R+ A ++L + NI+ VA+ G++S ++F Sbjct: 191 ARFYLSPYYLSRLFRRVTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHF 250 Query: 229 ISVFKAFYGLTPLNYLAKQR 248 VF+ G PL Y R Sbjct: 251 RRVFRETMGTGPLQYRKSHR 270 >UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B093_RUMGN Length = 413 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 12/226 (5%) Query: 24 NHATFTLPKNYLAAFA--CNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWS 81 + + A + +E+++ + I++ L + + Sbjct: 185 IEKRYEAENMLINAVTSGRESQALEITSKFESRLLP---QRISNNLRDMKNYTITLNTLL 241 Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMY 141 R A H + + + + + + + L R + + Sbjct: 242 RKAAEQAGVHPIHIDAYSNCNVTMLESLTSATQCLRAQQTI------ALGYCRIVKEHQH 295 Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 + SS+ V +++D+ L +A L ++ S L E TS + V R+ Sbjct: 296 KIHSSIIRKVVAYLETDLSADLTLNTLAQHLGVNASYLSTLFTKEMGTSLTDYVNHYRID 355 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +A +L + I +A CG YF +FK G+TP + Sbjct: 356 HAKTLLANTDVPIKDIALRCGIGDVHYFTRLFKRISGMTPKAWRES 401 >UniRef50_UPI0001C36936 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36936 Length = 527 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 1/108 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 RS V D I+ L+ +A + L P L + K + ++ + +T R+ A Sbjct: 412 RSPVIDRALVYIREHYSENITLQSLAEDIYLHPVYLSRLFKEKVGQTFLEYLTHYRIEMA 471 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 L N I + Q+ GY + YF VFK G TP + + K Sbjct: 472 KDYLRNPNLRIYDIGQMVGYETPQYFSRVFKELTGTTPKGFREELAGK 519 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 1/137 (0%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 + L+ L L N L + S+ + R ++ + L+ ++ Sbjct: 400 LLDEQGRLSLELCRRELLNGLTAFAALTGAGGNKEHSIMRDIARYMEQNYNREVTLQDIS 459 Query: 170 SSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 LS + ++ K E + + R+ A +L N I Q+A++ GY YF Sbjct: 460 ERFYLSREYISRRFKQEMGENVFDYLGRIRVEKAKLLLQNPNLKIAQIAEMVGYDDDKYF 519 Query: 229 ISVFKAFYGLTPLNYLA 245 VFK F G +P Y Sbjct: 520 SKVFKKFEGQSPNQYRK 536 >UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJL7_CALS8 Length = 291 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 69/154 (44%), Gaps = 14/154 (9%) Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD-------------SVC 152 K+ +P + E R F + E+ + + +M+I+ + D + Sbjct: 124 KKIKDQPLDIEAARRSFFNLTHIDHEKLQSVLDMMHIVAKYILDSEMIRISSLSSIEKII 183 Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNK 211 I++ L +A + LSP+ L K + ++ + + R++ + +++ + Sbjct: 184 EYIKNHYMEDITLDDLAKMVYLSPTYLSYLFKKQLGITFKEYLINIRLKKSKELIETTDL 243 Query: 212 NITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +I +++++ G +YF +FK +G++PLNY Sbjct: 244 SIGEISKMVGIEDQNYFSRLFKKKFGVSPLNYKK 277 >UniRef50_A9U895 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U895_PHYPA Length = 306 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILR-------SSVRDSVCRIIQSDIQHY 162 P +L R L +L +S F ALL + R S + I Q Y Sbjct: 52 ELPPRRDLGRIGSMDELEEWL-RSYFTALLNLLKRQRAGGSYSRHVSQAIQFILERYQGY 110 Query: 163 WNLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 NL +VA+S+ L+PS L + K E ++S+ V R+ A ++L D ++ Q++ G Sbjct: 111 INLEMVAASIGLNPSYLSRLFKEETQCNFSEYVNRIRIDAAQKLLESDQYSVKQISSQVG 170 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQR 248 +++ +YF VFK G+TP Y+ R Sbjct: 171 FTTYNYFFKVFKELTGMTPHAYVESLR 197 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 12/203 (5%) Query: 50 LNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQP 109 L + L + + N + F + ++ ++ + C +R+ P Sbjct: 309 LFNRLFEDAEQVLKNIFSKFKSNFVSSIETKNICFQIYYIC-------YRVLKKREAIPP 361 Query: 110 SRPCEAELTRA----LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNL 165 S A + A +L ++ + ++ ++ + ++ + I ++ +L Sbjct: 362 SSELLARIHSAPDIFILENTVNELFQYTKNQFNGSNGTQNRIIENTIKFIHQNLATALSL 421 Query: 166 RIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 ++A L +S S L + K + S ++ V + R+ A + L N ++A GY+ Sbjct: 422 EVIAEHLHISASHLSRTFKKYCDESLTEYVNKTRIEKAKEYLKDSNMLTYEIANQVGYND 481 Query: 225 TSYFISVFKAFYGLTPLNYLAKQ 247 +YF S+FK + G +P Y K Sbjct: 482 ATYFSSIFKKYTGFSPSEYRQKY 504 >UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HZ47_CYAP4 Length = 333 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLK 184 LS+ L++ L S+ DSV R++ ++ +L +A L +P L++KL+ Sbjct: 211 LSSILDRHAEELLARLPQSESLLDSVNRLLSQALRGGDPSLVAIAQQLGYTPRTLQRKLQ 270 Query: 185 NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 TSY ++ E R ++ L I+++A L G+S TS F F+ + G++P ++ Sbjct: 271 EAGTSYHSLLDEMRRELSIYYLREAQIAISEIAFLLGFSETSAFHRAFRRWMGVSPGDFR 330 Query: 245 AK 246 Sbjct: 331 RS 332 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 116 bits (290), Expect = 7e-25, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 S + +I + +L VA L ++P L + E + S+ +T RM A Sbjct: 373 SPLIQKALHVIDKSYKEPISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMERAK 432 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +L N I + GY YF ++FK G+TP Y A Sbjct: 433 SLLQDTNMKINMICVQVGYQDAKYFCTLFKKITGVTPNQYRASS 476 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 116 bits (290), Expect = 8e-25, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYA 202 + V D V + ++ + +L V+ L +SP+ L + K + ++ +TE R+ A Sbjct: 158 NALVMDHVRKYMEDNYMADLSLDSVSEILHISPAYLSAQFKKYQKMNFLDCLTELRINAA 217 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 ++L ++ +VA + GY SYF FK G+TP Y + + Sbjct: 218 KELLADPFRSAAEVASMVGYEDASYFARAFKKRTGMTPTQYRKEAAK 264 >UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=Clostridiales RepID=C5EPF6_9FIRM Length = 550 Score = 116 bits (290), Expect = 8e-25, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 145 SSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 S V + I+ + +L VA+ + +SPS E ++ + +T RM A Sbjct: 442 SQVLEEARAFIRENYAKEEISLNTVAARVNISPSYFSSIFSQEMGVTFVEYLTGVRMERA 501 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 ++L+ N T++ GY + YF +FK G TP Y A R+++ Sbjct: 502 KELLMCSNMKTTEIGYEVGYKDSHYFGYLFKKTVGCTPKEYRAGSRERL 550 >UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=Clostridium perfringens RepID=Q0TS33_CLOP1 Length = 506 Score = 116 bits (290), Expect = 8e-25, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 6/211 (2%) Query: 43 NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC-----HSRTPEV 97 +E+ + L IN +ND ++NK + + L+T I + + Sbjct: 295 YTLEIENVKENLKNSINERNLNDIEFYINKLIEYMLESGSLSTIYIHHLFYDLMEKLCKA 354 Query: 98 FRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQS 157 F + K++ + L + ++ + S+ + V +II++ Sbjct: 355 FDIYNGEVKKRFIEKILKCNSSETLKAAFESIIKDIAKECDNDILDEKSIANKVIKIIKN 414 Query: 158 DIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQV 216 + +L +A + +P+ L K E ++ + +T+ RM A + L N I QV Sbjct: 415 EYSSELSLDYIADKVNFTPTYLSYVFKKETGSNIVKYITDFRMNKAKEFLEEGNMKIVQV 474 Query: 217 AQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + CGY + SYF +FK ++G+TP + K Sbjct: 475 GKACGYENQSYFNRIFKNYFGVTPNQFKRKN 505 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Query: 141 YILRSSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRM 199 + + V +++ + +L+ VA +L LS L++ L E T++ ++V E R Sbjct: 252 RLFNRKLTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQ 311 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A + L + +I+Q+A G++ F FK ++ +P Y ++ Sbjct: 312 EIAERYLKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPETYRQSLQE 361 >UniRef50_B2I366 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2I366_ACIBC Length = 341 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 5/205 (2%) Query: 51 NHVLITHINRNIINDYLLFLN--KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQ 108 ++++ H + I+ L F + A V+ + +++ Sbjct: 137 DNLVNRHFSECAISGVLRFFKFITEGQFHPIFIDFNFSEGASEDEYFRVYGCPVSLGQKE 196 Query: 109 PSRPCEAELTRALLFTVLSNFLEQSRFIAL--LMYILRSSVRDSVCRIIQSDIQH-YWNL 165 + + L+ L+ +A+ L + R + V R I S ++ L Sbjct: 197 TRLYFDPAILDFQLWQAEPELLQLHEQLAIEKLQELARYDLVGEVRRAIGSTLESGETTL 256 Query: 166 RIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 VA+ L ++P L+ +L NTS+ QI+++ R R A ++L N+++ ++ L G+S Sbjct: 257 ETVAAQLNITPRRLRTQLSEANTSFQQILSDYRCRLAKKLLANTNESVERIVYLTGFSEP 316 Query: 226 SYFISVFKAFYGLTPLNYLAKQRQK 250 S F FK + TP+ Y +++ + Sbjct: 317 STFYRAFKRWTNETPVEYRKRKQHR 341 >UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG28_PSEU5 Length = 312 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 + ++ L + + + VR + ++ SD L +A L +S L + Sbjct: 186 MIAGMNEQLLRDYLGRMRHEQVSLQVRKEIIALLSSD---KLGLEHIAERLNMSGRNLHR 242 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 KL E TS+ ++ E R A++ L M ++ ++A G+ S F FK + G +P Sbjct: 243 KLAEEGTSFKELQDEIRQDLALRYLGMSGMSLNEIAFNLGFIDQSSFNRAFKRWTGGSPG 302 Query: 242 NYLAKQRQK 250 Y R++ Sbjct: 303 QYRRALRER 311 >UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480T9_COLP3 Length = 331 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRII---QSDIQHYWNLRIVASSLCLSPSLLK 180 T L+ FL S + + S + + I+ +SDI + I+A SL +S L+ Sbjct: 204 TELTRFLRDSPADLITIPGSGQSFKAKIRAILIHDESDILFCPSFEILALSLNMSAQTLR 263 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 ++LK E TSY I E R A+ L+M N+NIT ++ G+S F FK + G++P Sbjct: 264 RRLKVEGTSYPMIKDEIRRDLAIDYLVMTNRNITDISTALGFSEPRSFTRAFKQWTGVSP 323 Query: 241 LNY-LAK 246 Y AK Sbjct: 324 SKYNRAK 330 >UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32_CHLAA Length = 1202 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 L LE+ R ++ + I S H + +A + +S L Sbjct: 1076 LAHLQAALERRRRLS----DQAQMLVRKAMAYIHSHYTHPLTRQDIAHYVGMSEDYLTHC 1131 Query: 183 LKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 + E T+ + + R+ A +L +K+IT +A G+SS+SYF VF+ G +P Sbjct: 1132 FRQELGTTPVEYLNRYRVLQARHLLAESDKSITNIALEVGFSSSSYFSRVFRKEVGQSPE 1191 Query: 242 NYLAKQRQKV 251 Y ++ V Sbjct: 1192 EYRRLKQSSV 1201 >UniRef50_UPI00016C020E hypothetical protein Epulo_10707 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C020E Length = 420 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 88/236 (37%), Gaps = 9/236 (3%) Query: 12 ILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLN 71 L EK+ + + F K + A + LN L+ H+ + ND + Sbjct: 192 TLQEKKYLHNADYSYPFEKEKKLVEAVKSGQTADAAAILND-LLGHVLLSNANDLNIIKA 250 Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE 131 + L SR+A T + + N + S A L V+ F + Sbjct: 251 RVLELCTIISRVALESTKRIENTLSLNAVFLNELMESKSLEDLAF----ALHKVIKEFTD 306 Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSY 190 + I L V I + +L VA + L+PS K E S+ Sbjct: 307 E---ILELNNTALFVPIRKVINYINTYYAEEISLHKVAKLVHLTPSYFSTVFKKETGYSF 363 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +Q + + R+ + +L+ + + +VA G+ + +YF +VFK G+TP + Sbjct: 364 TQYLNKVRIEHGKLLLMDTSMTVLEVAIEVGFDTDTYFCTVFKKVVGVTPNQFRKS 419 >UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K0J1_AGRVS Length = 343 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 7/175 (4%) Query: 76 CVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRF 135 A P A VF + + + +A + L T S+ L + Sbjct: 166 FKPVRVDFAYPAPAHTEAYQRVFGCPVRFGQMENAFIYDAAWYKQPLLT--SDPLSHRQL 223 Query: 136 IALLMYILR-----SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSY 190 + + Y + + +SV R+++ + ++ VA +L +S L+++L S+ Sbjct: 224 LEFMAYNRARSREAAEIIESVERVLRQKLHSRMHISKVARALGMSERTLRRRLAESGVSF 283 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ + R +++L N ++ Q+A G+S F F+ + G TP A Sbjct: 284 QSLLDDLRKNRTLELLGNRNMSVEQIAFAVGFSDPHNFRRAFRRWTGTTPGALRA 338 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 7/150 (4%) Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRII 155 E F + + A T LL +L Q+ A+ + + ++I Sbjct: 120 EAFLRVVQGVQTRLPETVLAARTMELL-----AWLAQAG--AVFNPHSAQRLSKQIRQLI 172 Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 D+ W + VA L +S + L+++L NE S+ +++ +M A+ +L + Q Sbjct: 173 AQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELLGNIKMMRALTLLQTSPLGVAQ 232 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 VA GY S + F + F+A +G TP + Sbjct: 233 VAYAVGYESPARFAAKFRAHFGCTPSDVRK 262 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%) Query: 137 ALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTE 196 + I + + V + + +L ++ L +SP LK++LK E T++ +++ + Sbjct: 269 LMQRRIAHAGMTALVQHYLNTPDNGMPDLSSISELLHVSPRTLKRRLKEEGTTFRKLLAD 328 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 R R A+ +L + N+T++A+ G+S S F FK ++G++P + ++ Sbjct: 329 VRSRNAINLLKDGH-NLTEIAERLGFSDLSSFSQAFKRWHGISPSQFSQQK 378 >UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and AraC-type DNA-binding domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK9_ANOFW Length = 428 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 V + V +Q + + L VA + L+P K K E ++ VT R+ A Q+ Sbjct: 323 VIEQVEMFLQENYCYDVTLEEVAKYVHLTPYYFSKLFKKETGQTFIDYVTHLRIEKAKQL 382 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + + + + GY +YF VFK +TP Y Sbjct: 383 MRDEGLTVKEACYRVGYKDPNYFSRVFKKVTNMTPTEYRQ 422 >UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family) protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E6_9GAMM Length = 340 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 13/166 (7%) Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRII 155 + F A + + + ++F + +E L+ + + V ++ Sbjct: 165 DAFGYEAEYQRVFGCEIRFNQPNTTMVFDSCALSVESDHAQPELLKLHEQLASEQVAKLE 224 Query: 156 QSDIQHY-------------WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202 Q D+ H L VA L ++ L+ L T+++Q+V E R A Sbjct: 225 QQDLIHDVQRVLGELLDSQAITLDAVAERLGMTQRYLRSALSQAGTTFNQVVAEYRCMLA 284 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +L+ N+ I Q+ L G+S S F FK + GLTPL+Y + + Sbjct: 285 KHLLMKTNETIDQIVYLTGFSEPSTFYRAFKRWTGLTPLDYRKQAK 330 >UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=Listeria RepID=Q71VU1_LISMF Length = 780 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 7/193 (3%) Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFR-----LAANHSKQQPSRPCEAE 116 I+D + + R R L + ++ + EA+ Sbjct: 74 TISDTFFAHYYEDYFQHSFKFFSKESDPGRERVVGSLRKSVSELLIASATKKRANKLEAQ 133 Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 + +L+ FL++ + + + R ++ +LR A LS Sbjct: 134 SALFQILLLLTRFLKK-GIPSSARKEVNDKRISRIIREVEERFDEALSLREFAQKEFLSE 192 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 + L + K + Q +TE R+++A+Q LL ++IT++A G+SS +F VFK Sbjct: 193 AYLSRYFKKTTGLGFLQYLTEVRLKHAIQDLLHSAESITEIALKNGFSSQKHFSEVFKFH 252 Query: 236 YGLTPLNYLAKQR 248 + LTP Y A+ Sbjct: 253 FELTPSEYRAEHH 265 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 ++S V + ++ L VA +S S L KK K + + + R++ A Sbjct: 171 QNSTIQDVATYVYNNYDKQIYLDDVAKQFSISRSYLSKKFKQTTGFGFKEYLLNVRIKEA 230 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++LL N +IT +A CG++ ++YF F+ G++P Y Sbjct: 231 CRLLLETNHSITDIAFACGFNDSNYFGDAFRRIKGISPNKYR 272 >UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G755_9FIRM Length = 302 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 9/168 (5%) Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE--QSRFIALL 139 R+ + +++ + ++ + + + ++ +L LE + F+ Sbjct: 135 RVKDSAKELCEQLIDIYMAENDETESKITAQIKTKII------LLQFILEMWKKGFVIEN 188 Query: 140 MYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECR 198 R+ V + IQ + +L+ LS + + K + + SQ +T R Sbjct: 189 DTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYFKEHFHITLSQYITYLR 248 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + A Q+L + ++T+ A GY + SYFI FK YG++PL Y Sbjct: 249 LENAKQLLQDTDLSVTETAMQSGYQNVSYFIRSFKKAYGISPLKYRNS 296 >UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8R5_9RHOB Length = 338 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 8/177 (4%) Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELT-RALLFTVLSNFL 130 + V R A + A P F A+ +P + LL VL F Sbjct: 164 QEAAFVHQRRRGAEEMSAF-FGCPVRFGAPASRIVFKPEDLDLPLASGDRLLLRVLRAFG 222 Query: 131 EQ---SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN 187 +Q R + L + V ++V + +L VA+ L +SP L +KL Sbjct: 223 DQMLHGRGLGRKSSDLTAQVEEAVSARLSGGTA---SLANVAADLGMSPRTLSRKLARAG 279 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 TSY ++ E R A++ L ++++A L GYS + F F+ + G +P + Sbjct: 280 TSYFTVLEELRKALAIRYLRETRLPLSEIAFLLGYSGLNSFSEAFRRWTGQSPGQFR 336 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 56/107 (52%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 + + V ++ +++ ++ ++ VA L L+ L+++L E ++ ++ + R R+A Sbjct: 232 KHPLTALVRELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAK 291 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 ++L +I+ +++ GYS ++F FK + TP Y + ++ Sbjct: 292 KLLNHHEYSISYISEKLGYSEVTHFTRAFKRWTNQTPKQYRNLREEQ 338 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 +L ++ R + + L+ S+R ++ + Y L ++A L +S LK+ L Sbjct: 229 ALLYCENDKGRLVKENIRDLQKSIR---SELLYNSSNGYPTLPMIAERLNMSERTLKRHL 285 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + + T++ QIV + R A +ML +I +A + GY + FI FK +G TP Y Sbjct: 286 QAQGTTFLQIVADVRFTEAKKMLQHKQYSIQDIASIVGYEEATNFIRAFKKTFGETPSQY 345 Query: 244 LAKQR 248 + + Sbjct: 346 RKRSQ 350 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%) Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE 186 + EQ L + V RI+ + Y + VA +L + L+++L +E Sbjct: 219 AQLCEQQCAALLGELKRTDGIEGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADE 278 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +T+Y Q+V E RM A L + +I ++A + GY+ S F F GLTP Y Sbjct: 279 DTTYKQVVLEFRMELAASYLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRL 338 Query: 247 QR 248 + Sbjct: 339 HQ 340 >UniRef50_B6FJW1 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJW1_9CLOT Length = 509 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 73/189 (38%), Gaps = 1/189 (0%) Query: 63 INDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALL 122 + Y+ +L + L ++ + E + + + +QQ + Sbjct: 321 LKKYVFYLKERQVEEYRLKNLTKNLLYNYLMEIERYEVESEQLRQQYFNWIDNTHYIEEF 380 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 V + +E+ + + + + I+ Q L +A + + L Sbjct: 381 VQVFQDIIEKLEALRVYQLEAEDVKISKMKKYIKEHYQEQLELSEIAENFNFNYHYLSSY 440 Query: 183 L-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K+ +S + + R+ A ++L + +I+Q++ GYS SYF VFK G TP Sbjct: 441 FNKHTKEGFSGYLNKIRIEKACELLRKGDMSISQISAAIGYSDHSYFCRVFKKMIGNTPS 500 Query: 242 NYLAKQRQK 250 +Y + +++ Sbjct: 501 SYKRQMKKE 509 >UniRef50_UPI0001789620 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789620 Length = 540 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 C+ + + L VA L L+PS + K E ++ + VT +M A ++L Sbjct: 443 EACKYVSLRLDQRITLDDVAGCLHLNPSYFSRMFKKETGVTFIEYVTRMKMERAKELLRQ 502 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++ + ++ + Y + SYF FKA+ G+TP+ + Sbjct: 503 TDRTVGEICESLAYDNVSYFSKTFKAYAGVTPVEFR 538 >UniRef50_A4W2Y8 AraC-type DNA-binding domain-containing protein n=1 Tax=Streptococcus suis 98HAH33 RepID=A4W2Y8_STRS2 Length = 192 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 2/152 (1%) Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILR-SSVRDSVCRIIQSDI 159 NH + P + L +L+ +E+ L+ + ++I + Sbjct: 40 QINHVQMHPIPSITELVLIGYLNQLLAALIEEFPSETLIKPETQTKHYVQQAIKMIHNHY 99 Query: 160 QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218 H + +A L LS S L K K E S + + +M + Q+L +++IT++A Sbjct: 100 AHPIKVSEIADFLALSRSYLYKIFKQETGYSIKDYILQVKMNRSCQLLEDASRSITEIAY 159 Query: 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 GY F + FK ++ ++P + Q+ K Sbjct: 160 SVGYQDPLTFSAAFKNYFHISPTEFRKTQKNK 191 >UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR07_9CLOT Length = 515 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 LF V ++++ + + + + + D + R I ++ Q L+ +A + +S + + + Sbjct: 390 LFQVCREMIDETNQV-ISGRLEKHDLVDQISRYISANYQSNITLQDIADQIHISSAYVSR 448 Query: 182 KLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 + + ++ + R+ A +L + ++AQ+ G+ +YF SVF + G +P Sbjct: 449 LFRNKTGITITEAINRARIDQAKLLLGNPEYKVYEIAQMVGFEDAAYFTSVFTKYVGCSP 508 Query: 241 LNYLAKQ 247 Y +++ Sbjct: 509 SEYRSQK 515 >UniRef50_A6LW09 Response regulator receiver protein n=2 Tax=Clostridium RepID=A6LW09_CLOB8 Length = 446 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRM 199 ++ + +SV + I+ +I+ L VAS+ LS + K ++S+ V +CR+ Sbjct: 334 NKIKMKLFESVKQFIRENIETELELDKVASNFGLSVYYFSRTFKEVTGVNFSEYVNKCRI 393 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 A ++L N+ +V GY+ +YF VFK + G++P N+ +K+ Sbjct: 394 DVAKELLSTGEMNVKEVCYKVGYNDPNYFSKVFKKYEGVSPANFKGNMEEKIF 446 >UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A5EF29_BRASB Length = 382 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 51/107 (47%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQ 204 S + +S+ I+ + + +AS + +S L ++L + +Y I+ + R A++ Sbjct: 254 SELAESIRTILVRQPGRFATIDEIASEIGMSLRTLNRRLAADGITYQSIIDDMRKTLAIE 313 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 L + Q+ G+S TS F FK + G +P ++ A+ QK Sbjct: 314 YLERTTLPVEQICARVGFSDTSNFRKAFKKWTGQSPSSFRAETLQKS 360 >UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S369_9GAMM Length = 357 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 126 LSNFLEQSRFIALLMYILRSS-VRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKL 183 L FL+ + + ++ + V + +I+ D + + S L +S L+++L Sbjct: 237 LQEFLKLAPYHVIIEPQASTFSVTHRIRKILGDDFRAEMPSFEELTSLLNMSARTLRRRL 296 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + E TSY +I R A+ +L + +++VA+ G+S S F FK + GL+P +Y Sbjct: 297 EKEGTSYQRIKDNARRDAAISLLSREGLTVSEVAERVGFSDPSAFHRSFKKWTGLSPGSY 356 Query: 244 L 244 Sbjct: 357 R 357 >UniRef50_UPI0001788A43 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788A43 Length = 516 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMR 200 L + R I++ +L+ VA + +S + + K ++ V + R++ Sbjct: 408 TLHERIVLQAVRYIKARFTEPISLQEVADEVAVSRNYFSELFKRVTGHNFIDYVIDLRLK 467 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++L + + +VA G++ YF +FK G+TP Y + R+ Sbjct: 468 RAKELLSTTSLRVYEVADRSGFNDVKYFSKLFKKMVGMTPAEYQGQHRK 516 >UniRef50_A1U5N3 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=A1U5N3_MARAV Length = 288 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 7/202 (3%) Query: 55 ITHINRNIINDYLLFLNKNLTCV----KPWSRLATPVIACHSRTPEVFRLAANHSKQQPS 110 + + R+II +L + L + P VFR +++ Sbjct: 87 LEDVRRSIIEATVLAIRNVLDFTTMGTSEIREVTFPFDGDERLAESVFRCPVAYNRDLAG 146 Query: 111 -RPCEAELTRALLFTVLSNFLEQSR--FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI 167 A + L T +F E + L + V R++ + +L + Sbjct: 147 FTLPLAAIDTPLKMTNKISFQEALKVCQQELDQLSTEQTWSARVRRLMLQSRHGFPSLEM 206 Query: 168 VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 A ++P L ++L +E TSY ++ R + A+Q L +I +++ GYS + Sbjct: 207 TARRFHITPRTLHRRLVDEGTSYRAVLEGVRHQLAIQYLESGQMSIQEISFALGYSDIAN 266 Query: 228 FISVFKAFYGLTPLNYLAKQRQ 249 F FK + L P YL RQ Sbjct: 267 FRKAFKRWEMLAPSEYLNAHRQ 288 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 + + + I++ + ++ L +A + L+P+ L K E + + +T+ RM A Sbjct: 403 PRIVERIKNIVRDEYRNDIGLEDIAERVNLAPAYLSYLFKKETGANLVKYITDYRMEQAR 462 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 ++L I VA+ CGY + YF +FK +YG+TP Y K ++ Sbjct: 463 KLLEEGELKIVLVAKACGYENQPYFNRLFKNYYGMTPRQYREKNGKQ 509 >UniRef50_A4XMF1 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMF1_CALS8 Length = 518 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 1/204 (0%) Query: 47 LSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSK 106 + ++N+ + N IN + ++ +I T + + + + Sbjct: 313 IHSINNPTQVPLIENYINQLHKLYVEVFGENNLKYKMIKLIIMLLLETGAINKEESFDIE 372 Query: 107 QQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLR 166 + + A+ R L + + I+ + + I + +L Sbjct: 373 KVITEILNADAHRILETSKRAILALFGNAKVTHEQIIHNDSINKAIDFINQNYNQEISLA 432 Query: 167 IVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 +++ +P K K SY +T+ R++ A ++L +K+I ++A + G+S Sbjct: 433 QISAIFNFNPYYFSKLFKKYTGVSYKTYLTKLRIQKACELLKNSSKSIKEIAFMVGFSDP 492 Query: 226 SYFISVFKAFYGLTPLNYLAKQRQ 249 +YFI FK F G+TP + Q Sbjct: 493 NYFIKAFKKFVGVTPSFFRNMPEQ 516 >UniRef50_C4Z3B2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B2_EUBE2 Length = 514 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 83/218 (38%), Gaps = 14/218 (6%) Query: 41 NNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRL 100 + + + + L+ + ++I + FL + + R + + + VF Sbjct: 295 EDTPVLVQIDDDALMKQMKQDIKMKDITFLRIHFDALCKKYRGQSNFSHIYIKF--VFSN 352 Query: 101 AANHSKQQPSRPCEAELTRAL-----------LFTVLSNFLEQSRFIALLMYILRSSVRD 149 EAE R + + +++N+++ + Sbjct: 353 LLKDFYDNIPGADEAEFGREIDRLYKSEDFSCIMDIVNNYIDLLEKSFGKEPATSHREIE 412 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 +V I + + +A + L+PS L K E + S+ + + RM A ++L Sbjct: 413 TVKNYIHNHYGEEIGAQQLADMVYLAPSYLSSLFKKETGQNLSKYIKQYRMEKAKELLTG 472 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 N I +++ GY + SYF+ F+ ++G++P + + Sbjct: 473 TNMKIVNISEQVGYPNVSYFVQSFREYFGISPQKFRDQ 510 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 145 SSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 S + + + + L +A +L SP+ L + +K E T+++ +T+ R+R A Sbjct: 300 SPLVRRAKQYMLEHFSNSGLTLEAMAQALQTSPAYLSRMIKQELGTTFNSYLTQLRIRRA 359 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++L+ I ++A+ GY + YF + FK GL+PL Y Sbjct: 360 SRLLIATELTIAEIAEQVGYETQHYFSTAFKRATGLSPLQYRK 402 >UniRef50_C7H4C8 Two Component Transcriptional Regulator, AraC family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4C8_9FIRM Length = 416 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 12/228 (5%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLN-HVLITHINRNIINDYLLFLNKNLTCVKPWSRL 83 + L A A + + ++ H T+ R Y + + R Sbjct: 199 EQRYESENRILDAVARGDEEAAIEAMHQHSRFTYGGRFEGTLYQQ--KNKMIVLNTLLRK 256 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 A H + + ++ + E+ +++ + ++ R +L Y Sbjct: 257 AIEPSKVHPYYIDAISSKYSRIIEEAN-----EVPNEMMWQMTRDYCAYVRRYSLKEY-- 309 Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 S V + ++ L+ +A+ +SPS L K E ++ + R+ A Sbjct: 310 -SPAVQKVMNYVNLNVAEPLTLKSLAAMCFISPSYLSALFKQETGSTLIDYINTQRVNRA 368 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 Q+L+ +N I VA+ G +YF +FK G+TP Y + ++K Sbjct: 369 AQLLVQNNHTIAAVAEEVGILDVNYFTKIFKKTLGVTPTRYRREHKEK 416 >UniRef50_A3WY00 Transcriptional regulator, AraC family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY00_9BRAD Length = 345 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Query: 112 PCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASS 171 ELT A L + L+Q + L + V V +I +++ + +A Sbjct: 213 DYGNELTYAELRQLCDGLLKQLK--------LGAGVAGEVRGLILANLSMPIEFKRIAKY 264 Query: 172 LCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 L +S L+++L+ E TS+ Q+ E + + A++ + + ++ ++A G+ + F Sbjct: 265 LNMSERSLRRRLQEEGTSFRQLADELKAQIAIKYIRDTDLSVEEIAFALGFGDAASFRHA 324 Query: 232 FKAFYGLTPLNYLAKQRQK 250 F+ + TP +Y ++ Sbjct: 325 FRRWTNATPQDYRKSGIRR 343 >UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VSF4_ALCBS Length = 338 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 47/102 (46%) Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202 L + V RII + + VA L +S LK+KL+ TSY +++ R A Sbjct: 236 LPPPLLGQVRRIILGGGGRFPGVEEVAGELHMSSRTLKRKLQQLGTSYQEVLDGLRKGLA 295 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 V+ L K + ++A GYS S F F+ + +P +Y Sbjct: 296 VEYLTQSEKTVDEIAMTLGYSDASNFARAFRRWTARSPSDYR 337 >UniRef50_UPI0001C355CA AraC family regulatory protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355CA Length = 327 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 131 EQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTS 189 EQ R + + +R V R I ++Q + +A C+SP+ LK K +T+ Sbjct: 204 EQERALDRVTRNQIDIIR-QVRRRITQNLQENITIDQLAREYCISPTSLKSNFKQVYSTT 262 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + + RM A +LL + + +A GY++ S F + FK YGL P Y K R Sbjct: 263 IKDYLRKVRMERASALLLTTDSTVADIAASLGYTNQSKFSAAFKTVYGLAPAEYRKKCRH 322 Query: 250 KVM 252 + + Sbjct: 323 EYI 325 >UniRef50_UPI0001787EAA two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787EAA Length = 447 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQ 204 V D + R I I +L +A + +PS L + K + + + +M A+ Sbjct: 345 DVIDRIHRYILEHISGDVSLTAIAEEVHFNPSYLSRYYKQLTGQNLLEYIQAKKMEGALH 404 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++ N + ++A G+ S SYF + FK G+TP Y Q Sbjct: 405 LMQHTNMKLQEIAVRLGFESPSYFTTFFKKKMGVTPQEYRNTQ 447 >UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A8H057_SHEPA Length = 344 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNENTSY 190 A I+ V + I + + +A + +S L++KL+ E TS+ Sbjct: 225 DEAIQAYFQSIVSQPFSQRVSKEISIAMTLGNPDRDAIAKAFHMSSRNLQRKLREEGTSF 284 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 S+ V + R A + L ++ ++A G+ S F FK +YG++PL Y K K Sbjct: 285 SEQVEQLRKDLAQKYLATPQLSMLEIAFRLGFKDPSNFTRAFKRWYGVSPLQYRQKNNPK 344 >UniRef50_C6IZZ6 Transcriptional regulator n=2 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZZ6_9BACL Length = 776 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 81/245 (33%), Gaps = 18/245 (7%) Query: 7 EPCVVI-LTEKEVEVSVNNHATFTLPKNYLAAF---ACNNNVIELSTLNHVLITHINRNI 62 E C V+ L E H F L K L A C + + L+ H Sbjct: 542 EQCQVLDLEEILPYTPQEVHYPFALEKELLQALRMGQCEQAMQLIEAFISELVLHSG--- 598 Query: 63 INDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALL 122 + L L + + + +L + + E + + Sbjct: 599 --------KEKLLKEGVMQVLGSIMHTLLETGYQPHQLYEGDNPFEQLNQIR-EPEQIVR 649 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 F L ++ ++ + + V +++ +L A +P L + Sbjct: 650 FFQQKIILPYAQKLSEDQTARAKPLIEQVTAMLKDQFAAGISLEACAHHFNTTPYTLSRL 709 Query: 183 LKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K ++ VT R+ A ++L + + ++A+ G SYFI +FK F +TP Sbjct: 710 FKQVTGINFIDYVTALRIEKAKELLRDSDMKVNEIAEQVGLQ-PSYFIRLFKRFEQITPG 768 Query: 242 NYLAK 246 Y K Sbjct: 769 QYREK 773 >UniRef50_C6CVW8 Two component transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=C6CVW8_PAESJ Length = 543 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN-T 188 L++ + S + +I+Q D L+ VAS++ ++P L K K E Sbjct: 420 LKEIAADFRSLSATPSQIICEAEKILQRDYAESLTLQSVASAVHVTPVWLSKLFKKEKRQ 479 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++ + +T+ R+ A +ML + Q++ GY +F +FK G TP Y ++ Sbjct: 480 TFLEYLTDIRIEKAKEMLGDIQYKVYQISYQVGYKDPVHFSKLFKKQVGCTPKEYRRQR 538 >UniRef50_C5EWE8 Response regulator receiver n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EWE8_9FIRM Length = 501 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 5/170 (2%) Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMY 141 R+ + ++ F + + + + + ++ L E SR Y Sbjct: 335 RILANIYQVYTSDRFGFAEKMGEIYRGIEQCTDFDRMKECVYAALGEA-EDSRSGNQAHY 393 Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 + R I+ + + ++ VA + L+ L KNE ++S+ + RM Sbjct: 394 TSYVA---KAVRYIEKNYRQIGSVSEVAGEVGLNQDYLFHLFKNETGVTFSEFLNSTRMN 450 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 A+ +L ++A+ GYS+ +YF +FK + +TP + +R++ Sbjct: 451 RAIWLLNNTQLKSYEIAEQVGYSNQAYFSRLFKQKFQMTPYEFRNMKRKQ 500 >UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q0VNT5_ALCBS Length = 337 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNEN 187 +L + + + + + V R+I ++ + NL VA L + L+ +L + Sbjct: 211 YLHEQLASEQVARLEKQDLVAQVNRLIGELLESGHANLEEVAERLGIKARQLRTRLADAG 270 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 T+++Q+V + R R A ++L +++I ++ L G+S S F FK + G+TP+ Y Sbjct: 271 TNFNQLVADYRCRLAKRLLAGTDESIDEIVYLTGFSEPSTFYRAFKRWVGMTPIEYRK 328 >UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=Enterobacteriaceae RepID=D2THV7_CITRO Length = 284 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 111 RPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVAS 170 P E + + L+ ++L + + S+C +Q + + VA+ Sbjct: 146 SPQEQAIIQPLVLSLLHLCRSVVNTPPDIRRPRAEFLYHSICNWVQDNYARPLSRESVAT 205 Query: 171 SLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFI 229 ++P+ L + T S+ V RM A +L + ++ +VAQ CGY + YF Sbjct: 206 FFNITPNHLSRLFTRHGTMSFVDYVRWVRMAKARMILQKYHLSVNEVAQRCGYEDSDYFC 265 Query: 230 SVFKAFYGLTPLNYLAK 246 +F+ +GLTP Y A+ Sbjct: 266 RLFRRQFGLTPGEYRAR 282 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 2/160 (1%) Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSR-FIALLMYILRSSVRD 149 + E+ +AA H + A L +L+ + + + + A S + Sbjct: 377 EAAVSEMRGIAAAHPPLYDAAAITEVTDPAELRRLLAGWADAAEEYGADRRETDSSQLIW 436 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLM 208 + + + +L VA+ L PS L K K+ + ++ + VT R+ A ++L Sbjct: 437 HIVDYLDAHYFEDISLIDVATRFHLDPSYLSKLFKSVTSENFIEYVTRKRIEKACELLRS 496 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + I+++++L GY + YF VFK G TP Y Q+ Sbjct: 497 SERKISEISELIGYENQRYFSQVFKKSTGQTPSEYREAQQ 536 >UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001968F18 Length = 1345 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 131 EQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKN-ENT 188 ++ + + M + + D V II +I + + ++A + +S L +KLK N Sbjct: 1217 QEVKNQMVDMQSTDNKLLDKVMNIINRNISNPELTVEMIAKEIGISRVHLHRKLKELTNQ 1276 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 S ++ R++ A +L+ ++T+VA L G+SS + F FK YG+TP Y+ K Sbjct: 1277 STRDLIRNVRLKQAANLLIYKRYSVTEVASLTGFSSITLFSRSFKELYGMTPSEYIGKHS 1336 Query: 249 QKV 251 +V Sbjct: 1337 NEV 1339 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 77/144 (53%), Gaps = 1/144 (0%) Query: 107 QQPSRPCEAELTRALLFTVLSNFLE-QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNL 165 ++ R ++ L +++ +E Q + +++ + S + + I+S+I+ +L Sbjct: 128 EEVERKQNSQAQEHLALALMALMVEKQPELLNMIIRATQFSETQKIIQFIESNIEEEISL 187 Query: 166 RIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 +A + +S + LK++L E S+SQ++ R+ +A L + +K+IT +A G+ S Sbjct: 188 ETLAKHMGMSTATLKRRLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSA 247 Query: 226 SYFISVFKAFYGLTPLNYLAKQRQ 249 ++F + FKA +TP + AK +Q Sbjct: 248 AHFSTAFKAVQQMTPKEFRAKVQQ 271 >UniRef50_B7DU32 Transcriptional regulator, AraC family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DU32_9BACL Length = 334 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 RS + + IQS + +L +A +S L + E + + + R++ A Sbjct: 224 RSRIIQAAVDYIQSHLADELSLTRIAVYCSVSTYHLSHLFRKEMGMTLTAFIKSLRLKKA 283 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 ++LL + ++++A G+S +YF F+ YGL P Y + + Sbjct: 284 RELLLNSSLTVSEIAYQVGFSDPNYFSKTFRVTYGLPPSEYRSHRH 329 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 21/235 (8%) Query: 15 EKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNH--VLITHINRNIINDYLLFLNK 72 +K V++ + + A + L +H I +++ ++D +L + Sbjct: 300 DKNVKIRADEQLPIERENKLIEAIKSGDGEKALQAFDHYVQAILRCSKHPLHDMRKYLQQ 359 Query: 73 NLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQ 132 + RL + + R + H + + S L Sbjct: 360 LFIIL---GRLLNEMGLHWETAQDFARFSTVHQVTEHGK---------------SEILHI 401 Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYS 191 R + S+ + + L +A + LSP + K K + ++S Sbjct: 402 VRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFS 461 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + VT+ R+ +A Q+L + K++ ++ GY +YF VFK G +P +Y Sbjct: 462 EYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKS 516 >UniRef50_C0D596 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0D596_9CLOT Length = 429 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 11/226 (4%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIN--DYLLFLNKNLTCVKPWSR 82 + K L N + + + + +R+I+ D + + R Sbjct: 211 EERYRYEKLMLQEVRQGNT--DKALHYYRQFSRASRSIVRTEDPIRTSKNLGFSLNTMLR 268 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 + + H ++ + R E E + + F+ R Sbjct: 269 KSAELAGIHPVYLDIISSNFALLIENAYRMEEVEDIKFHMIGAYCRFVRTERL------D 322 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 S + I+ + L+ +A + +SPS L + E S S + R+ Sbjct: 323 QYSPLVRRAVTYIRLHLAEPLTLKQIAEGIRVSPSYLSRTFNREIGESVSNYIAGARVEK 382 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A ++L + +A G+++ +YF F+ G TP Y ++ Sbjct: 383 AAELLKFTGLPVQNIASYVGFANLNYFSRCFRLHKGTTPTQYRNRK 428 >UniRef50_UPI00016A75A2 transcriptional regulator, AraC family protein n=3 Tax=pseudomallei group RepID=UPI00016A75A2 Length = 336 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 14/177 (7%) Query: 73 NLTCVKP----WSRLATPVIACHSRTPE-VFRLAANHSKQQPSRPCEAELTRALLFTVLS 127 L P + R + + R + RL ++ ++ A ++A Sbjct: 166 ELGFTWPQPDYFERYRDRLPKVNFRASDNQLRLPSSSLARKSLLANAAAHSQA------- 218 Query: 128 NFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN 187 + Q L+ + S + D V + Y +L +ASSL LS LK++L+ Sbjct: 219 --IRQLDREMALLNLDASDLVDRVRAGLMLSEDGYPSLARLASSLFLSERTLKRRLREHG 276 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 TSY +++ + R R A +L + ++ V+ GY + F F+ + G+ P Y Sbjct: 277 TSYREMLEKARYRDACALLRETDLSLADVSAKLGYQNPPTFTRAFRRWSGIAPSRYR 333 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 75/122 (61%) Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 + +LS F + + + +++ S+ D V ++I+ DI W L V+SS+ +S S L+K Sbjct: 141 ILYLLSFFNDYNDIVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRK 200 Query: 182 KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 +L EN ++ +I+ + +M++A L +KNI +++ L G++STSYFI VFK +Y TP Sbjct: 201 QLNKENLTFKKIMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPK 260 Query: 242 NY 243 Y Sbjct: 261 KY 262 >UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J070_9BACL Length = 523 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYA 202 RS V + + ++ A + LSP K K ++S +T R+ A Sbjct: 416 RSHVLQRALLFVNQRFKEEISMEQTAEYVNLSPYYFSKLFKLQTGENFSDYLTRLRIEEA 475 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +++ + ++ ++ GY +YF VFK G+TP Y + Sbjct: 476 KRLIAGRSLSLKEICYEVGYKDPNYFSRVFKKSVGITPSEYRQQ 519 >UniRef50_C6VNG3 Response regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNG3_LACPJ Length = 486 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 ++ +II+ +L VAS L L+ L + K E S++Q + + R+ AV +L Sbjct: 384 AMRQIIKKRYPEQLSLAAVASELHLNAVYLGQLFKQEVGRSFAQFLNDYRVDVAVDLLRD 443 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + +I Q+A+ GY ++SYF +FK G++P +Y Sbjct: 444 SDLDIGQIAEAVGYQNSSYFYKLFKKQTGMSPGDYRK 480 >UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC74_9FIRM Length = 240 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 +L+ E+ L S + + +I+ L +A ++P L Sbjct: 114 ELLNKLNEEKEITQGLDRENCSDIVREMINVIEESYGMKLQLDAIAEKFHMTPEYLGNLF 173 Query: 184 -KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 K ++S + + RM A ++L + I +VA GY YF VFK + G++ Sbjct: 174 AKETGITFSNYLRQVRMEKAKELLTGTDMKIYEVACAVGYPDQKYFSKVFKEYAGVSAKQ 233 Query: 243 YLAK 246 + K Sbjct: 234 FALK 237 >UniRef50_Q21KB5 Transcriptional regulator, AraC family with amidase-like domain n=2 Tax=Alteromonadales RepID=Q21KB5_SACD2 Length = 330 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%) Query: 139 LMYILRSSVRDSVCR---IIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIV 194 L+ S + + + ++ + L VA +SP ++ K + + Sbjct: 211 LLEQENSHPDEEIIQTQIWLRDNFAKEIKLNDVAQLFSMSPRTFTRRFKSATGRTPLHYL 270 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 R+ A +L N +++++ GY ++F ++FK G+TP Y R K+ Sbjct: 271 QNIRIDVAKDLLQTSNLSVSEIMFRVGYHDPTHFTNLFKKSLGVTPSQYRTTVRAKLF 328 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 85/223 (38%), Gaps = 12/223 (5%) Query: 28 FTLPKNYLAAFACNNNVIELSTL--NHVLITHINRNIIND-YLLFLNKNLTCVKPWSRLA 84 F LP A +N ++E + L+ ++ ND ++ L + P Sbjct: 77 FVLPGQLHAISQKDNEIMEYENILFKSSLLKSSGYDLCNDKFIQPLFSGSLNICPVINNQ 136 Query: 85 TPVIACHSRTPEVFRLAANHSKQQPSRPCEAELT-RALLFTVLSNFLEQSRFIALLMYIL 143 TP P V RP +L+ +A LF +L + + Sbjct: 137 TPYY------PPVITAINEIDHLCDLRPYAYQLSIKAHLFQILYTLVSNCGQNKIKPINQ 190 Query: 144 RSSVR-DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 +S + ++ I ++ Q + +A+ S S K K S+ Q + + R+ Sbjct: 191 KSLKKIKTILSYIANNFQENIAIEDIANYCFYSKSYFMKFFKETMGVSFIQYLNDYRLEI 250 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 A ++L NI +A G+++ SYF FK YG++P Y Sbjct: 251 AAELLTTTTDNILDIAFATGFNNISYFNRCFKKKYGVSPRKYR 293 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 95 PEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRI 154 P V + +P E R+++ ++LS+ + A ++ +++ + Sbjct: 122 PRVGSFLLQALNELRMQPQEQRTARSIVVSLLSHCHDLLGSQAQ-TSSRSQALFEAIRQY 180 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNI 213 + + + VA + LSP+ L + +++ + R+ A +L + + Sbjct: 181 MDAHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV 240 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 +A CG++ ++YF +F+ +P Y + ++ Sbjct: 241 KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQL 278 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 150 SVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 +Q + ++L+ +A +L +S L + +K E ++ Q++TE RM AV +L Sbjct: 292 RAKEYMQKHFTEREFSLKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMDQAVHLLE 351 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +I +A+ GY + YF +VFK G++P Y Sbjct: 352 TTPLSIHDIAEQTGYDTQHYFSTVFKKTMGVSPNQYRR 389 >UniRef50_C6CTB8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTB8_PAESJ Length = 530 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 + DSV + ++ +L+ V+ + P+ K+ K SY+ VT R+ + Sbjct: 429 DDIIDSVQQYVRQHYNEELSLQWVSDKYFIHPNYFSKRFKQIVGISYNDYVTRVRIERSK 488 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++L I +++QL GY YF SVFK G++P Y Sbjct: 489 ELLKTTTLKIARISQLVGYEDQGYFCSVFKKVTGVSPSAYR 529 >UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFA6_VIBFU Length = 268 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 24 NHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRL 83 N L +NY+ + + + + N L + + Y L + + S Sbjct: 51 NDVPINLAQNYICYISPKDRHLFEQSDNLHLTNILFQKNKLAYSPLLK---SVLPKESDA 107 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 +V L A + E+ L LF L + + R + Sbjct: 108 QQSWYISTETMKKVCTLMAQIEHESSLHSVESRLMTEALFQQLVVEISRGRLTSQSNNAS 167 Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYA 202 +S+ + IQ++ +N+ ++ +S L +++K N S++ V R+ +A Sbjct: 168 DNSIL-KIIDWIQNNYAEEFNVGDISDQFEISSRTLSRRIKQVTNLSFNNYVHRVRINHA 226 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 + +L + ++T +A GY ++YF + FK F TP + Sbjct: 227 MNLLHYSDLSVTDIAFQVGYKDSNYFSTKFKRFTNKTPTEFR 268 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 71/140 (50%) Query: 103 NHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY 162 + + ++ L L ++S I LM + + + I+++ Sbjct: 125 GYIFNKIETSKDSALKMLKLSYLISRMGIAPDIIISLMASTAVTFTEKIRNQIENNPSKR 184 Query: 163 WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 W L ++A +S ++K+L++E TS+S + + RM ++Q+LL + I Q+++ G+ Sbjct: 185 WCLNMIADEFNISEISVRKRLESEGTSFSNLFLKVRMEKSMQLLLQNELQICQISKSVGF 244 Query: 223 SSTSYFISVFKAFYGLTPLN 242 STSYFI +FK ++G+TP Sbjct: 245 RSTSYFIKIFKDYFGITPKQ 264 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 61/136 (44%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 R +E T+ L L + + L +S + R + L VA Sbjct: 120 ERESLSEATQRYWMMGLYQQLAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVA 179 Query: 170 SSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFI 229 +S + L +KLK E T Y +++ E R+ +A+ ++ + N+ +AQLCGY S F Sbjct: 180 ERFAMSRATLIRKLKQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFS 239 Query: 230 SVFKAFYGLTPLNYLA 245 FK +GLTP Y+ Sbjct: 240 QRFKGKFGLTPSEYIK 255 >UniRef50_D1PII7 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PII7_9FIRM Length = 406 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 15/232 (6%) Query: 22 VNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWS 81 + L L A A + L+ + + + D + + + Sbjct: 181 QRLEMRYQLEDAMLQAVADGDRARLHQLLHDADLNVAVEHRLADPVRNIKNYCIVLNTVL 240 Query: 82 RLATPVIACHSRTPEVF-RLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM 140 R A H + R A +Q P+ L + + ++ L+ Sbjct: 241 RKAAQRGGVHPIYLDDLSRTCAARIEQLPTTGAAQRLVQEIA----------DQYCLLVQ 290 Query: 141 YILRSSVRDSVCR---IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTE 196 + V ++ + +LR VA +L + S + K E + + + + Sbjct: 291 RHSTQGYTEPVQTAMLYVRQHLAEPLSLRTVAGALDCNASYFSARFKKETGHTLTGFILQ 350 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 RMR A+ +LL + +AQ CG+ +YF +F+ G +P Y R Sbjct: 351 ERMRLAISLLLSTRLQVQTIAQHCGFLDVNYFSRIFRQTTGCSPSEYRKTGR 402 >UniRef50_A4XMI3 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMI3_CALS8 Length = 251 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 1/141 (0%) Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNL 165 K +P E + V+ L+ V SV + L Sbjct: 100 KDYILKPFTKEEILEAVKKVVDEIRNYRENEDTLIENCDGDVIKSVFDYLNKHYAQQITL 159 Query: 166 RIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 VA+ + L P L + L K ++ +I+TE R++ A+ +L + +VA+ G+S Sbjct: 160 NDVANYVHLHPVYLGRLLRKKVGKTFKEILTEVRLKKAISLLKNSSLKNYEVAEAVGFSD 219 Query: 225 TSYFISVFKAFYGLTPLNYLA 245 YF VFK YG+TP + Sbjct: 220 AQYFSQVFKKIYGITPNEWKK 240 >UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKC7_9CLOT Length = 545 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKL 183 +LS L ++ + V I + Q ++ + L +SP+ Sbjct: 421 LLSAALRMNQAMNRERDNTMKQVIQKAKEYIMDNYQDPDLSVEKICRQLHMSPAYFSTMF 480 Query: 184 KNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 K E +Y+ +T+ R+ AV++L + +A GY +YF VFK +G++P Sbjct: 481 KKETGQAYTAYLTQVRLDKAVELLNKTDDKTYVIAAKVGYQEQNYFSYVFKKRFGVSPTK 540 Query: 243 YL 244 + Sbjct: 541 FR 542 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 31/127 (24%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK---KKLKNENTSYSQIVTE--CRM-- 199 V S+ ++IQ Q+ +L +A + +K E+ ++ + RM Sbjct: 376 VSSSIVQLIQ---QYDLDLEQLAEEGEEQGDTFAVIPRMMKKED--FAHWLLSAALRMNQ 430 Query: 200 --------------RYAVQML----LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 + A + + + ++ ++ + S +YF ++FK G Sbjct: 431 AMNRERDNTMKQVIQKAKEYIMDNYQDPDLSVEKICRQLHMS-PAYFSTMFKKETGQAYT 489 Query: 242 NYLAKQR 248 YL + R Sbjct: 490 AYLTQVR 496 >UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW54_9CLOT Length = 517 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 120 ALLFTVLSN-FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPS 177 AL+ L L S +I+ L + +SV + I+ + + L VA + ++ S Sbjct: 389 ALMARKLREILLSASVYISRLEKLRPNSVVQKARKYIEENYWNPDLRLDDVAGYVYINAS 448 Query: 178 LLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 E S+ +T+ R+ A+ +L + I ++A L GY + S+F FK + Sbjct: 449 YFSSVFSKEMGISFGDYLTKVRIEKAMDLLKNTHMKIYEIADLVGYQNPSWFNVAFKRYT 508 Query: 237 GLTPLNYLA 245 G P ++ Sbjct: 509 GQKPGDFRK 517 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 12/96 (12%) Query: 164 NLRIVASSLCLSPSLLKKKLKNENTSYSQIV---TECR----MRYAVQMLL----MDNKN 212 + I A +P+L+ +KL+ S S + + R ++ A + + + Sbjct: 376 SDTITAVLNESNPALMARKLREILLSASVYISRLEKLRPNSVVQKARKYIEENYWNPDLR 435 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + VA Y + SYF SVF G++ +YL K R Sbjct: 436 LDDVAGYV-YINASYFSSVFSKEMGISFGDYLTKVR 470 >UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobia RepID=B9XAQ1_9BACT Length = 326 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 5/135 (3%) Query: 117 LTRALLFTVLSNFLEQ----SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 + ++L F + S ++ + V R I+ + L VA ++ Sbjct: 189 RQHEAIVSLLEIFAQHISLVSNWVLVQERNAEPPVIARAKRYIEDNQAEDLTLSEVAKAV 248 Query: 173 CLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 S K K +++ V+ R+ A +LL N +++VA G+ S ++F V Sbjct: 249 NTSTFYFCKMFKKATGLHFTEYVSRVRIEKAKNLLLNPNLRVSEVAFEVGFQSLTHFNRV 308 Query: 232 FKAFYGLTPLNYLAK 246 FK G +P Y + Sbjct: 309 FKKIVGQSPTEYREQ 323 >UniRef50_C1DHF9 Transcription activator in PHB biosynthesis, AraC family n=3 Tax=Azotobacter RepID=C1DHF9_AZOVD Length = 348 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 116 ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD-SVCRIIQSDIQH-YWNLRIVASSLC 173 +L L + RF ++ S + V ++I + + +A +LC Sbjct: 198 QLDSPLSTADAALASMHERFAEQRLHEQNSQLSTWRVQQLIMERLSDGEPTIEEIAGTLC 257 Query: 174 LSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 +S L++ LK E T Y ++ E R A L + ++ +VA L G+ S F Sbjct: 258 VSKRTLQRCLKKEGTQYKDLLNETRREQAHLYLCHSHFSLQEVAYLLGFHEHSSFFRACS 317 Query: 234 AFYGLTPLNYLAKQ 247 ++G+TP Y A + Sbjct: 318 RWFGMTPGQYRAHR 331 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 1/111 (0%) Query: 139 LMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTEC 197 L + + S+ D V R+++ +I ++ VA +L +S L +KLKN+N+SYS IV Sbjct: 231 LSRLFKRSISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRKLKNDNSSYSDIVEAV 290 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + A ++L + +T +A G+S S F FK + GL+P + + + Sbjct: 291 KKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAEFRRQNQ 341 >UniRef50_C6XSX1 Sensor protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XSX1_PEDHD Length = 1370 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 77/178 (43%), Gaps = 13/178 (7%) Query: 86 PVIACHSRTPEVFRLAA--NHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 PVI +RTP V+++ + ++P + A ++ +L + L+ + + Sbjct: 1191 PVILLTARTPLVYKIEGYETGADDYITKPFNLNMLEARVWNLLDSRLKLRERYRKEISLQ 1250 Query: 144 RSSVR---------DSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQ 192 +V + I+ +I ++ + + +S L +K+K + + + Sbjct: 1251 PKNVAITSPDEKFLEKAMAYIEQNISEASLSVEELGKEVGMSRVTLYRKIKGLTDQTAIE 1310 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + R++ A Q+L + N+ +VA + G+ YF FK +G TP Y ++ +K Sbjct: 1311 FIRSVRLKRAAQLLEQNKLNVNEVAYMVGFQDIDYFRRCFKEQFGYTPKEYASQAGEK 1368 >UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2_BACV8 Length = 1346 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 4/163 (2%) Query: 88 IACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV 147 + S + F HS+ L A F S +++ + M L + Sbjct: 1184 VGADSYLTKPFSATLLHSRIHNLLESRKLL--AERFNTNSILIDKRAAVTESMNKLDNEF 1241 Query: 148 RDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQM 205 + + ++I+ + ++ ++ ++C+S S L +K+K S ++ + + +M+YA ++ Sbjct: 1242 LEKINKLIEDRLSSEKIDIGYLSDAMCMSNSTLYRKMKALTGLSTNEYIRKIKMQYAERL 1301 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 LL NI++VA G +ST YF FK +G+ P +YL K + Sbjct: 1302 LLEGKYNISEVAFKVGINSTVYFRQCFKDEFGMAPSDYLKKIK 1344 >UniRef50_A1HMP5 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP5_9FIRM Length = 251 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 17/219 (7%) Query: 34 YLAAFACNN--NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 + F N I L+T N+ + +N N+ L + L R + V Sbjct: 26 HWRLFTAGNGSAAINLTTTNYFELAFLNINLPAQSDLIVAGKL-------RQSGRVKDIV 78 Query: 92 SRTP-EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 T + F +A K + ++ L T+LS +L + ++ Sbjct: 79 IVTAHQDFAIAHAAIKIGAADLLIKPISADELNTILSRYLPPKNTKPVYSPLIT-----K 133 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM- 208 V I+++ +L +A+++ ++PS L ++ K E S+SQ + R++ A +L+ Sbjct: 134 VLTILENRYAERLSLTNIAATVHVNPSYLSRRFKAEVGYSFSQYLINLRLKIAKDLLISR 193 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + +I Q+A+ G++S Y ++F GLTP Y Sbjct: 194 PDLSIAQIAEQTGFASQQYLSALFHRNTGLTPREYRKNN 232 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 IQ L VA ++ +S + + K E S+ + + R+ A ++L Sbjct: 439 KAIDYIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKSFVDYLNDVRIDKAKELLKD 498 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +VA+ G S YF +FK + G+TP Y Sbjct: 499 VRYKTYEVAEKVGISDPHYFSKLFKKYSGMTPSEYR 534 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 20/170 (11%) Query: 77 VKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFI 136 + +L P + + + F L E + LL + + Sbjct: 367 LDELVKLTPPGVGVYQSVADFFNL-----------TELKERIQHLLELSMYR-------L 408 Query: 137 ALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVT 195 A L + V ++V ++IQ D L ++ + L+PS L K E + +Q V Sbjct: 409 ASLRKEGGNRVIETVKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVL 468 Query: 196 ECRMRYAVQMLLMD-NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 + RM A ++L + + +V + GY + YF VFK G+TP Y Sbjct: 469 QLRMMKAKELLKKRLDLKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEYR 518 >UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGW7_9FIRM Length = 504 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 4/158 (2%) Query: 89 ACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 C P+ +R + + + LT L +E +R+ Sbjct: 348 VCSEVNPQAYR---RMQESEIEKTAATALTIKTLEDCFRREIEIILSEKDKKEDIRNYTI 404 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 I+ + +L ++A L ++P L E +++ + R+ +A ++L Sbjct: 405 RRAINFIREHYRENISLELLAEHLEITPEYLSTLFNKEVGINFTTFLKRFRISHAKRLLK 464 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +K I ++++ GY YF VFK G++P +Y Sbjct: 465 GSSKKIYEISEEVGYHDPKYFNRVFKEEVGVSPGDYRQ 502 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 53/101 (52%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAV 203 R+ ++ V +I ++ W+ + +A SL LS + L++KL E ++S+I+ + RM A+ Sbjct: 168 RADIQRKVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAFSEILVDVRMSLAL 227 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +L + I +A GY S S F FK +G +P Sbjct: 228 SLLQSTDAAIASIAYQVGYESASRFSVRFKQRFGFSPTAIR 268 >UniRef50_UPI0001C36345 two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36345 Length = 412 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 85/245 (34%), Gaps = 15/245 (6%) Query: 2 QLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRN 61 + SS P + + + + +AA N L I R Sbjct: 174 NMVSSHPDEPLAVKL-------IEDRYKAEEELMAAITQGNMEKALKAQGKFRNFQIARR 226 Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 D + R A H + L+ +K+ + + E R Sbjct: 227 -YKDPARNFRNLMITANTLCRKAAQAGGVHPVHID--ELSCKCAKKIETLMTKQEADRFN 283 Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 L ++ + R +L Y S + V I ++ +LR +A+ ++PS L Sbjct: 284 L-EMVRKYCMLVRNYSLQGY---SPLVQKVVNHIDLNLVSDLSLRNLAAEFNVNPSYLSS 339 Query: 182 KLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 K E + + + V + RM+ A++ L N I +A G S +YF +FK G TP Sbjct: 340 LFKKEMSVTITAYVNQQRMKQAIRYLNTTNMQIQNIAADVGISDVNYFSKLFKRATGKTP 399 Query: 241 LNYLA 245 Y Sbjct: 400 SEYRE 404 >UniRef50_C6D789 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6D789_PAESJ Length = 547 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 ++V D +C I + +L +A +PS L + K E + S+ + CR+R A Sbjct: 441 ATVIDKICHYINEHLNEDLSLVRLAEINYFNPSYLSRFFKLECGVNLSEYIDNCRVRRAK 500 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++L D + +VA GY + F FK G+TP Y Sbjct: 501 ELLKEDELKVREVAVEVGYEAAHSFTRFFKKATGMTPQEYR 541 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 9/200 (4%) Query: 48 STLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQ 107 S + L +N + + +YL + N C K + ++ P+ L + Sbjct: 49 SYSDKYLEIELNEDTVRNYLSYYNH---CEKQFLETPPCILRKSFAYPD---LLISMIDN 102 Query: 108 QPSRP-CEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLR 166 S+ + A+ F++LS F + + A L + + V I SD+ +W LR Sbjct: 103 INSQNHIHPDFKDAIFFSLLSVFSDVANLRAFLTSGM-PTFSGKVRSIFLSDVSKHWKLR 161 Query: 167 IVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 +A L +S SL+KKKL ENTS+S+I+ + RM A+++L N I V+++CG+SSTS Sbjct: 162 DLADYLYMSESLIKKKLLLENTSFSKILLDTRMSLAIKLLKQ-NHPIKYVSEMCGFSSTS 220 Query: 227 YFISVFKAFYGLTPLNYLAK 246 YF+ +F+ +Y TP YL Sbjct: 221 YFVCLFRQYYECTPRKYLKH 240 >UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK82_BACSK Length = 297 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 7/200 (3%) Query: 51 NHVLITHINRNIINDYLLFLNKNLTCVKPWSRL---ATPVIACHSRTPEVFRLAANHSKQ 107 +H N +++ + + W RL + P+++ +P + L + ++ Sbjct: 88 DHRYYYPENAKEPWEFIYISLQGASVQDIWQRLIQKSGPIVSLPPNSPLIRSLYSIYADT 147 Query: 108 QPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI 167 + + L + L +E R +A I++ L Sbjct: 148 KADGLRDPYLAATQGYQFL---IECFRAMAEERPQNEPYHYQRALAYIEAHYHEQICLDN 204 Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 +A + +S L + K + +T+ VT+ RMR A +LL N+ I Q+A GY + Sbjct: 205 IAEEVGVSRYTLTRLFKKQLHTTPISYVTDLRMRKACSLLLHTNRTIKQIAADVGYPDDN 264 Query: 227 YFISVFKAFYGLTPLNYLAK 246 YF VF+ + G + + Sbjct: 265 YFHKVFRRYTGSSATQFRRN 284 >UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium RepID=C4ZAF9_EUBR3 Length = 292 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 2/160 (1%) Query: 90 CHSRTPEVF-RLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 R E+ +++ ++++ + EA+ + + ++ I ++ Sbjct: 130 ICERLIEINEQISGKNAEKTDAANIEAQFETKITLIKFIRKMWRNGLILENGTNGTNTTE 189 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 + I+ + +L+ + LS + + K + + SQ V R+ +A Q+L Sbjct: 190 KEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYVNHLRLEHARQLLE 249 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++T+VA GY + SYFI FK YG++PL Y Q Sbjct: 250 ESTASVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRNFQ 289 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 268 1e-70 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 245 8e-64 UniRef50_A8U8U9 Putative uncharacterized protein n=1 Tax=Carnoba... 180 3e-44 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 178 1e-43 UniRef50_C2D366 Putative uncharacterized protein n=1 Tax=Lactoba... 170 6e-41 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 169 8e-41 UniRef50_UPI0001C36345 two-component system, response regulator ... 164 3e-39 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 162 9e-39 UniRef50_C0D596 Putative uncharacterized protein n=2 Tax=Clostri... 162 2e-38 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 161 2e-38 UniRef50_UPI00016C020E hypothetical protein Epulo_10707 n=1 Tax=... 161 2e-38 UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminoc... 158 1e-37 UniRef50_UPI0001C36527 two-component system, response regulator ... 158 2e-37 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 158 2e-37 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 158 2e-37 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 157 3e-37 UniRef50_A8S4U5 Putative uncharacterized protein n=1 Tax=Clostri... 157 3e-37 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 156 6e-37 UniRef50_C7H4C8 Two Component Transcriptional Regulator, AraC fa... 156 6e-37 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 155 1e-36 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 155 1e-36 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 155 2e-36 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 154 2e-36 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 154 2e-36 UniRef50_A4XMG0 Two component transcriptional regulator, AraC fa... 154 3e-36 UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerot... 153 4e-36 UniRef50_A9U7M3 Predicted protein n=1 Tax=Physcomitrella patens ... 153 5e-36 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 153 5e-36 UniRef50_D1PII7 Transcriptional regulator, AraC family n=1 Tax=S... 153 6e-36 UniRef50_C6IZZ6 Transcriptional regulator n=2 Tax=Paenibacillus ... 152 1e-35 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 151 2e-35 UniRef50_B6FKZ8 Putative uncharacterized protein n=1 Tax=Clostri... 151 3e-35 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 151 3e-35 UniRef50_C0D3A6 Putative uncharacterized protein n=1 Tax=Clostri... 150 6e-35 UniRef50_UPI0001C35B7C two-component system, response regulator ... 149 7e-35 UniRef50_UPI0001C3522D two-component system, response regulator ... 149 8e-35 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 149 8e-35 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 149 1e-34 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 149 1e-34 UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. ora... 148 1e-34 UniRef50_C4Z3B2 Two-component system, response regulator YesN n=... 148 1e-34 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 148 2e-34 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 148 2e-34 UniRef50_UPI0001973B3B response regulator receiver protein n=1 T... 148 2e-34 UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostri... 148 2e-34 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 148 2e-34 UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=... 148 2e-34 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 147 2e-34 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 147 3e-34 UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryante... 147 3e-34 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 147 3e-34 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 147 4e-34 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 147 4e-34 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 147 4e-34 UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Ta... 147 5e-34 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 146 6e-34 UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32... 146 7e-34 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 146 8e-34 UniRef50_C6LB63 Putative response regulator receiver domain prot... 146 8e-34 UniRef50_A4XMF1 Two component transcriptional regulator, AraC fa... 146 8e-34 UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=K... 145 1e-33 UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=... 145 1e-33 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 145 1e-33 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 145 1e-33 UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonel... 145 2e-33 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 145 2e-33 UniRef50_D2LZT6 Two component transcriptional regulator, AraC fa... 145 2e-33 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 145 2e-33 UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostri... 145 2e-33 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 145 2e-33 UniRef50_C1PAU9 Transcriptional regulator, AraC family n=1 Tax=B... 144 2e-33 UniRef50_UPI0001788A43 two component transcriptional regulator, ... 144 2e-33 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 144 3e-33 UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=V... 144 3e-33 UniRef50_C5EHK1 Predicted protein n=1 Tax=Clostridiales bacteriu... 144 3e-33 UniRef50_C6CZ56 Two component transcriptional regulator, AraC fa... 144 3e-33 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 144 3e-33 UniRef50_Q2RJ70 Transcriptional regulator, AraC family n=1 Tax=M... 143 3e-33 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 143 4e-33 UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillu... 143 4e-33 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 143 4e-33 UniRef50_A5ZM23 Putative uncharacterized protein n=1 Tax=Ruminoc... 143 4e-33 UniRef50_A6M1R0 Response regulator receiver protein n=4 Tax=Clos... 143 5e-33 UniRef50_B7ACV0 Sensor protein n=1 Tax=Bacteroides eggerthii DSM... 143 5e-33 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 143 6e-33 UniRef50_B8CYB7 Helix-turn-helix-domain containing protein AraC ... 143 6e-33 UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecali... 143 6e-33 UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dict... 143 7e-33 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 143 7e-33 UniRef50_Q8EPK8 Transcriptional regulator (AraC/XylS family) n=1... 142 8e-33 UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 T... 142 8e-33 UniRef50_C6LBG3 Transcriptional regulator, AraC/XylS family n=2 ... 142 1e-32 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 142 1e-32 UniRef50_C2L0L9 Response regulator receiver protein n=2 Tax=Lach... 142 1e-32 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 142 1e-32 UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantell... 142 1e-32 UniRef50_UPI0001788C2F two component transcriptional regulator, ... 142 1e-32 UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 142 1e-32 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 142 1e-32 UniRef50_D0ZE29 Hypothetical transcriptional regulator AraC fami... 141 1e-32 UniRef50_C0C1J0 Putative uncharacterized protein n=1 Tax=Clostri... 141 2e-32 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 141 2e-32 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostri... 141 2e-32 UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=... 141 2e-32 UniRef50_C9B1F2 Transcriptional regulator n=4 Tax=Enterococcus R... 141 2e-32 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_UPI0001C36936 two component transcriptional regulator, ... 141 2e-32 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 141 2e-32 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 141 2e-32 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 141 2e-32 UniRef50_B0CCY1 Transcriptional regulator, AraC family n=1 Tax=A... 141 3e-32 UniRef50_B9MLQ2 Two component transcriptional regulator, AraC fa... 141 3e-32 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 140 3e-32 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 140 3e-32 UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostri... 140 3e-32 UniRef50_C5EU48 Response regulator receiver protein n=4 Tax=Clos... 140 4e-32 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 140 4e-32 UniRef50_UPI0001C35C03 two component transcriptional regulator, ... 140 4e-32 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 140 4e-32 UniRef50_A4XMI3 Two component transcriptional regulator, AraC fa... 140 4e-32 UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostri... 140 5e-32 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 140 5e-32 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 140 5e-32 UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clos... 140 5e-32 UniRef50_B6FJW1 Putative uncharacterized protein n=1 Tax=Clostri... 140 6e-32 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 140 6e-32 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 140 6e-32 UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecali... 140 6e-32 UniRef50_C6D127 Two component transcriptional regulator, AraC fa... 139 7e-32 UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7... 139 1e-31 UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=B... 139 1e-31 UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=T... 139 1e-31 UniRef50_C5EQZ1 Predicted protein n=1 Tax=Clostridiales bacteriu... 138 1e-31 UniRef50_A9KJM4 Two component transcriptional regulator, AraC fa... 138 1e-31 UniRef50_UPI0001C35BEA two-component response regulator n=1 Tax=... 138 1e-31 UniRef50_UPI0001789951 two component transcriptional regulator, ... 138 1e-31 UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_A9U743 Predicted protein n=1 Tax=Physcomitrella patens ... 138 2e-31 UniRef50_C4Z6Z4 Two-component system, response regulator YesN n=... 138 2e-31 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 138 2e-31 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 138 2e-31 UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bactero... 138 2e-31 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 138 2e-31 UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and... 138 2e-31 UniRef50_A1HMP5 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 138 2e-31 UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicu... 138 2e-31 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 137 3e-31 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 137 3e-31 UniRef50_C3QA40 Putative uncharacterized protein n=3 Tax=Bactero... 137 3e-31 UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus R... 137 3e-31 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 137 3e-31 UniRef50_A9U7P8 Predicted protein n=1 Tax=Physcomitrella patens ... 137 3e-31 UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 T... 137 3e-31 UniRef50_UPI0001851370 two component AraC family transcriptional... 137 4e-31 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 137 4e-31 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 137 4e-31 UniRef50_Q65KY8 Probable transcriptional regulator n=1 Tax=Bacil... 137 4e-31 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 136 4e-31 UniRef50_UPI00017895AE two component transcriptional regulator, ... 136 4e-31 UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostri... 136 4e-31 UniRef50_A3DK80 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_A4XFU2 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_UPI0001C36780 two component transcriptional regulator, ... 136 5e-31 UniRef50_C6CTL6 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_C6CVW8 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_B8I0K9 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 136 5e-31 UniRef50_C5EUD7 Putative uncharacterized protein n=1 Tax=Clostri... 136 5e-31 UniRef50_A4XN10 Transcriptional regulator, AraC family n=1 Tax=C... 136 5e-31 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_C6D8S9 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_B2I366 AraC-type DNA-binding domain-containing protein ... 136 5e-31 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 136 6e-31 UniRef50_UPI0001788EF7 two component transcriptional regulator, ... 136 6e-31 UniRef50_C7G6J0 Putative response regulator receiver domain prot... 136 6e-31 UniRef50_A6TRZ8 Response regulator receiver protein n=1 Tax=Alka... 136 7e-31 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 136 7e-31 UniRef50_C6CTB8 Two component transcriptional regulator, AraC fa... 136 8e-31 UniRef50_UPI0001787D2D two component transcriptional regulator, ... 136 8e-31 UniRef50_C4GDI6 Putative uncharacterized protein n=1 Tax=Shuttle... 136 8e-31 UniRef50_D2LTH2 Two component transcriptional regulator, AraC fa... 136 9e-31 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 136 9e-31 UniRef50_C6D708 Transcriptional regulator, AraC family n=1 Tax=P... 136 9e-31 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 136 9e-31 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 135 1e-30 UniRef50_C6CVD2 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 135 1e-30 UniRef50_C0C2A1 Putative uncharacterized protein n=1 Tax=Clostri... 135 1e-30 UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=C... 135 1e-30 UniRef50_A5Z5R3 Putative uncharacterized protein n=1 Tax=Eubacte... 135 1e-30 UniRef50_UPI0001C35FBC two component transcriptional regulator, ... 135 1e-30 UniRef50_A8RQG1 Putative uncharacterized protein n=2 Tax=Clostri... 135 1e-30 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 1e-30 UniRef50_C4L2Y3 Two component transcriptional regulator, AraC fa... 135 2e-30 UniRef50_UPI0001789620 two component transcriptional regulator, ... 135 2e-30 UniRef50_B9MP59 Two component transcriptional regulator, AraC fa... 135 2e-30 UniRef50_UPI0001C36195 two component transcriptional regulator, ... 135 2e-30 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 134 2e-30 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 134 2e-30 UniRef50_C6D6F5 Transcriptional regulator, AraC family n=1 Tax=P... 134 2e-30 UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 134 2e-30 UniRef50_B7K731 Transcriptional regulator, AraC family n=2 Tax=C... 134 3e-30 UniRef50_C5EWE8 Response regulator receiver n=1 Tax=Clostridiale... 134 3e-30 UniRef50_C9A6S2 Response regulator receiver n=5 Tax=Bacteria Rep... 134 3e-30 UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 T... 134 4e-30 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 133 4e-30 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 133 4e-30 UniRef50_C6JBV9 Two component transcriptional regulator n=1 Tax=... 133 4e-30 UniRef50_C6JDJ0 Two component transcriptional regulator n=1 Tax=... 133 4e-30 UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonel... 133 5e-30 UniRef50_A5Z5Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 133 5e-30 UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostri... 133 5e-30 UniRef50_C6IXM8 Two component transcriptional regulator n=1 Tax=... 133 5e-30 Sequences not found previously or not previously below threshold: UniRef50_C6D6D8 Transcriptional regulator, AraC family n=1 Tax=P... 147 5e-34 UniRef50_C6CT83 Two component transcriptional regulator, AraC fa... 143 4e-33 UniRef50_UPI000178A16B two component transcriptional regulator, ... 142 1e-32 UniRef50_P32677 Uncharacterized HTH-type transcriptional regulat... 142 1e-32 UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae Rep... 141 1e-32 UniRef50_C6D490 Two component transcriptional regulator, AraC fa... 141 3e-32 UniRef50_C6CWF4 Two component transcriptional regulator, AraC fa... 140 6e-32 UniRef50_C6CY25 Two component transcriptional regulator, AraC fa... 140 6e-32 UniRef50_A8U8W0 Putative uncharacterized protein n=1 Tax=Carnoba... 139 1e-31 UniRef50_C0CYV6 Putative uncharacterized protein n=2 Tax=Clostri... 139 1e-31 UniRef50_O31522 HTH-type transcriptional regulator yesS n=2 Tax=... 137 3e-31 UniRef50_C6LL33 Two-component response regulator n=1 Tax=Bryante... 136 7e-31 UniRef50_C5EKG4 Response regulator receiver protein n=1 Tax=Clos... 136 7e-31 UniRef50_C6IWJ3 Response regulator n=2 Tax=Bacillales RepID=C6IW... 136 9e-31 UniRef50_UPI0001788F00 two component transcriptional regulator, ... 136 9e-31 UniRef50_C6IXH5 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 1e-30 UniRef50_C6CVE0 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C4ZBY2 Two-component response regulator n=4 Tax=Clostri... 135 1e-30 UniRef50_C5ETU0 Two component transcriptional regulator n=1 Tax=... 135 1e-30 UniRef50_C6J0N4 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 1e-30 UniRef50_C6CXU8 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=... 135 2e-30 UniRef50_Q9KDT8 BH1123 protein n=1 Tax=Bacillus halodurans RepID... 134 2e-30 UniRef50_A9U777 Predicted protein n=1 Tax=Physcomitrella patens ... 134 3e-30 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 133 4e-30 UniRef50_C6CWB0 Two component transcriptional regulator, AraC fa... 133 4e-30 UniRef50_C6JD25 Response regulator receiver protein n=1 Tax=Rumi... 133 4e-30 UniRef50_UPI0001788789 transcriptional regulator, AraC family n=... 133 4e-30 UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryan... 133 4e-30 UniRef50_UPI0001787F36 two component transcriptional regulator, ... 133 5e-30 UniRef50_C6LBV9 Transcriptional regulator, AraC family n=1 Tax=B... 133 5e-30 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 133 5e-30 UniRef50_C6J5Z3 Two component transcriptional regulator n=1 Tax=... 133 6e-30 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR Sbjct: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA Sbjct: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK Sbjct: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP Sbjct: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Query: 241 LNYLAKQRQKVMW 253 LNYLAKQRQKVMW Sbjct: 241 LNYLAKQRQKVMW 253 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 143/252 (56%), Positives = 192/252 (76%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 M++ S +PC+V+LTEK+V + VN +L N++A C NN+I++S+LN+ L+ HI+ Sbjct: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 +II DYL FLNK+L+ + W R ATP++ TP+VFR+AA HS E E TRA Sbjct: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LLFTVLS FL+ +F++L+MY+LR+ V DSV +II+SDI WNL +VAS LCLSPSLLK Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 KKLK+ENTSYSQI+T CRMRYAV L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 241 LNYLAKQRQKVM 252 L+Y+++ R++ + Sbjct: 241 LHYVSQHRERTV 252 >UniRef50_A8U8U9 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U8U9_9LACT Length = 415 Score = 180 bits (458), Expect = 3e-44, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 15/256 (5%) Query: 2 QLSSSEPCVVILTEKEVEVSVNN-----HATFTLPKNYLAAFACNNNVIELSTLN-HVLI 55 L SSEP T +EV N A + + A + ++ + ++T+N H + Sbjct: 163 DLRSSEPVQPTSTRREVRYRQQNAQQLIEARYQFENILMEAISKGDSTLAVTTMNDHQEL 222 Query: 56 THINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANH-SKQQPSRPCE 114 T + D + L + SR A H + ++ P Sbjct: 223 TDFSSRNTADPVRAYKNILVTLNTLSRKAAEKGGVHPIYLDSISEKFALMIERTKDLPSL 282 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 +E++R LL E S I L S++ I I + L +A ++ + Sbjct: 283 SEISRVLLT-------EYSESIWLYSNPEYSTIVKKAIHYILLHIDYPLTLEEIARNIYV 335 Query: 175 SPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 +P+ L +K K + +Q + ++ A L + IT++A L G++ +YF VFK Sbjct: 336 NPAHLSRKFKGETQMTPTQFIHLKKVEEAKLHLEKGHLAITEIALLVGFNDPNYFGKVFK 395 Query: 234 AFYGLTPLNYLAKQRQ 249 G+TP ++ ++ Sbjct: 396 KVTGMTPSQFIRSTKK 411 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 32 KNYLAAFACNNNVIELSTLNHVL-----ITHINRNIINDYLLFLNKNLTCVKPWSRLATP 86 F + V ++ V ++R+ ++ +L L + + ++ + Sbjct: 23 NGEYRYFNGGDLVFADASQIQVDKCVENFVLVSRDTLSLFLPMLKEEALKLHAHKKVPSL 82 Query: 87 VIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSS 146 ++ +R VF+ A S+ + R E RAL+F +LS FLE ++FI LL+ +L+ + Sbjct: 83 LVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDTQFIPLLLNVLQPN 142 Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQML 206 +R VC +I ++I H W L +AS L +SPSLLKKKL+ E TSYSQ++TECRM+ A+Q++ Sbjct: 143 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTECRMQRALQLI 202 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 ++ +I +VA CGY S SYFI VF+ +YG+TP Y + Q++ Sbjct: 203 VIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQEL 247 >UniRef50_C2D366 Putative uncharacterized protein n=1 Tax=Lactobacillus brevis subsp. gravesensis ATCC 27305 RepID=C2D366_LACBR Length = 406 Score = 170 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 10/249 (4%) Query: 3 LSSSEPCVVILTE-KEVEVSVNNHATFTLPKNYLAAFACNN--NVIELSTLNHVLITHIN 59 L +P + E + L + + A N + + LI+ + Sbjct: 160 LKPDQPLHAKTVQAINAENQQAIEKRYQLEADMMQLVATGNLDKISQFQQPLTQLISLFS 219 Query: 60 RNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTR 119 + N L R+A H + + ++ + + Sbjct: 220 SRVPNQPLRSGKNICFVNNTLCRIAAKQGGVHPVFLDSISEKSAVLIEKQNTI------Q 273 Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 L VLS + ++ + S + I + H ++L A L +P+ L Sbjct: 274 GLKNLVLSMLRDYTQLVMDTSSANFSPIVKRAIDFILIHLGHQFSLADAARQLSTNPAYL 333 Query: 180 KKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 +K K E +++ R++ A L+ +IT +A L GY+ +YF VFK G Sbjct: 334 SRKFKEETGLTFTAFTNHRRIKIAKDYLVNQQLSITDIAGLIGYNDLTYFTRVFKKQTGQ 393 Query: 239 TPLNYLAKQ 247 TPL Y Sbjct: 394 TPLQYRKTS 402 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 11/245 (4%) Query: 4 SSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNII 63 SS E C I K + + + A + L L+ +I Sbjct: 177 SSQEECTHIQPLKAAGE--SGRYPMDKERELVRAVKEGDQTTARQLL-RELLEYIQSATG 233 Query: 64 NDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLF 123 D+ L ++ L + SR A ++ + S + A L Sbjct: 234 EDFCLMRSRALELMAVLSRAAVDGGGDQDTILDMNSRCFSESDHLRTAEELALW----LT 289 Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 + F + + L+ + + ++ + + L A + LSPS + Sbjct: 290 RMTDRFTDT---VFSLVEVKHRDIICKAIEYLKRNCRDRVTLEDTAGHVGLSPSYFSRVF 346 Query: 184 KNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 K E S++ +T R+ MLL + +I ++ CG+ SYF VF+ + G+TP Sbjct: 347 KEEVGESFNSYLTALRISRGRAMLLDTDASIAEICDRCGFDDQSYFTKVFRKYTGVTPGR 406 Query: 243 YLAKQ 247 + A++ Sbjct: 407 FRARR 411 >UniRef50_UPI0001C36345 two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36345 Length = 412 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 82/245 (33%), Gaps = 15/245 (6%) Query: 2 QLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRN 61 + SS P + + + + +AA N L I R Sbjct: 174 NMVSSHPDEPLAVKL-------IEDRYKAEEELMAAITQGNMEKALKAQGKFRNFQIARR 226 Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 D + R A H + +K+ + + E R Sbjct: 227 Y-KDPARNFRNLMITANTLCRKAAQAGGVHPVHIDELSCK--CAKKIETLMTKQEADRFN 283 Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 L ++ + R +L Y + V I ++ +LR +A+ ++PS L Sbjct: 284 L-EMVRKYCMLVRNYSLQGYS---PLVQKVVNHIDLNLVSDLSLRNLAAEFNVNPSYLSS 339 Query: 182 KLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 K E + + + V + RM+ A++ L N I +A G S +YF +FK G TP Sbjct: 340 LFKKEMSVTITAYVNQQRMKQAIRYLNTTNMQIQNIAADVGISDVNYFSKLFKRATGKTP 399 Query: 241 LNYLA 245 Y Sbjct: 400 SEYRE 404 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 162 bits (410), Expect = 9e-39, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 12/225 (5%) Query: 24 NHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRL 83 L + A + + L+ N + ++N D++ L V S Sbjct: 149 YKYPLKLEEKLSKAIKRGDKDLALNIFNDIWNEFHDKNYTEDFIKRWGLGLVAVITRS-- 206 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 +Q S E R + ++ E +++L Sbjct: 207 -----FIEIGENADILFKETDPWRQISELSTKEKFREWMRNIIEVVCE---YVSLTKNSK 258 Query: 144 RSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 + D ++IQ + +L +A L ++P+ L K+E ++S +T CR+ Sbjct: 259 NRKLIDEAIKLIQENYSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIEK 318 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 A ++L I +VA+ GY+ YF VFK G TP Y K Sbjct: 319 AKELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_C0D596 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0D596_9CLOT Length = 429 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 11/235 (4%) Query: 16 KEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNII--NDYLLFLNKN 73 E V + K L N L + + +R+I+ D + Sbjct: 202 GEEAVMELLEERYRYEKLMLQEVRQGNTDKALHY--YRQFSRASRSIVRTEDPIRTSKNL 259 Query: 74 LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQS 133 + R + + H ++ + R E E + + F+ Sbjct: 260 GFSLNTMLRKSAELAGIHPVYLDIISSNFALLIENAYRMEEVEDIKFHMIGAYCRFVRTE 319 Query: 134 RFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQ 192 R S + I+ + L+ +A + +SPS L + E S S Sbjct: 320 RL------DQYSPLVRRAVTYIRLHLAEPLTLKQIAEGIRVSPSYLSRTFNREIGESVSN 373 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + R+ A ++L + +A G+++ +YF F+ G TP Y ++ Sbjct: 374 YIAGARVEKAAELLKFTGLPVQNIASYVGFANLNYFSRCFRLHKGTTPTQYRNRK 428 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 9/216 (4%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 + A + ++L+ + + L L + + A Sbjct: 330 EQELTQAIRMGDRQAAYRQAKNILMQLLLEQEKRPAI--LKMKLLELNTLAARAALEGGA 387 Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 LA++ + + A++ +L +++ +A SS+ D Sbjct: 388 DPEAVSDLALASST--EFLTLDNLADMRERILERLMALV----AQVAETREQRNSSLIDR 441 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMD 209 + I+++ L VA + LSP K K + ++ +T+ R++ A ++LL Sbjct: 442 ASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGLNFIDYLTKVRLKAARELLLNT 501 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + ++A GY YF VFK G TP + Sbjct: 502 KLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRK 537 >UniRef50_UPI00016C020E hypothetical protein Epulo_10707 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C020E Length = 420 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 9/242 (3%) Query: 6 SEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIND 65 L EK+ + + F K + A + LN L+ H+ + ND Sbjct: 186 QRKISETLQEKKYLHNADYSYPFEKEKKLVEAVKSGQTADAAAILND-LLGHVLLSNAND 244 Query: 66 YLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV 125 + + L SR+A T + + N + S A ++ Sbjct: 245 LNIIKARVLELCTIISRVALESTKRIENTLSLNAVFLNELMESKSLEDLAFALHKVIKEF 304 Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 LE + + V I + +L VA + L+PS K Sbjct: 305 TDEILELNNTALFVP-------IRKVINYINTYYAEEISLHKVAKLVHLTPSYFSTVFKK 357 Query: 186 E-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 E S++Q + + R+ + +L+ + + +VA G+ + +YF +VFK G+TP + Sbjct: 358 ETGYSFTQYLNKVRIEHGKLLLMDTSMTVLEVAIEVGFDTDTYFCTVFKKVVGVTPNQFR 417 Query: 245 AK 246 Sbjct: 418 KS 419 >UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B093_RUMGN Length = 413 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 8/224 (3%) Query: 24 NHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRL 83 + + A L + + + I N+ L + + R Sbjct: 185 IEKRYEAENMLINAVTSGRESQALEITSKFESRLLPQRISNN-LRDMKNYTITLNTLLRK 243 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 A H + + + + + + + L R + + + Sbjct: 244 AAEQAGVHPIHIDAYSNCNVTMLESLTSATQCLRAQQTI------ALGYCRIVKEHQHKI 297 Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYA 202 SS+ V +++D+ L +A L ++ S L E TS + V R+ +A Sbjct: 298 HSSIIRKVVAYLETDLSADLTLNTLAQHLGVNASYLSTLFTKEMGTSLTDYVNHYRIDHA 357 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +L + I +A CG YF +FK G+TP + Sbjct: 358 KTLLANTDVPIKDIALRCGIGDVHYFTRLFKRISGMTPKAWRES 401 >UniRef50_UPI0001C36527 two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36527 Length = 403 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 8/235 (3%) Query: 13 LTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNK 72 L E + + + + L A A + L T ++R D Sbjct: 175 LPEDTLVHTKMLEDRYRMENELLHAIASGDADTALRICRKFSSTSVSRRF-KDPNRDRRN 233 Query: 73 NLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQ 132 L R A H + RL++ +K+ + E E +R L ++ + Sbjct: 234 ILITSNAIYRKAAENGCVHPVHID--RLSSGFAKKIETVCTEREASR-LALEMVRKYCLL 290 Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYS 191 R +L S+V + I ++ H +L+ ++ C++ S L K E S + Sbjct: 291 VRNFSL---KGHSAVIQKIVNHIDLNLAHDLSLKRLSEEYCVNASYLSTLFKKEMGQSIT 347 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + E R++ A+ L + I ++A G + +YF +FK G+ P Y Sbjct: 348 AYIAEQRIKQAILYLNSTDMQIQEIALAVGITDLNYFSKLFKKMTGMPPSVYKKN 402 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 12/245 (4%) Query: 7 EPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELST------LNHVLITHINR 60 + ++ LT ++ ++ ++ T + F + I ++ LN+ LI + Sbjct: 38 QSVLIKLTTGKISITTSSGEYITA-SGPMLIFLAKDQTIHITMEETHEQLNYNLIELDSA 96 Query: 61 NIINDYLLFLNKNLTCVKPWSRLAT--PVIACHSRTPEVFRLAANHSKQQPSRPCEAELT 118 +I N Y FL ++ P ++ T + + VF L + +K Q + E Sbjct: 97 SIKNAYNFFLYEHADFSDPLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKEY- 155 Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 L+ +LS F+ + AL + ++++ +++ II SDI W L+ ++ SL +S S Sbjct: 156 --LIRFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCST 213 Query: 179 LKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 LK+KLK E+TS+S++ RM A ++L NIT+VA +CGY S SYF VFK + Sbjct: 214 LKRKLKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKT 273 Query: 239 TPLNY 243 TP + Sbjct: 274 TPSEF 278 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 4/192 (2%) Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 I++D + + L V+ + + F+ N +Q + Sbjct: 52 ILSDIRMPVMDGLAFVRELRQRQPRQDVILITVHDDFQFIQNAIRQGVCDYLLKPVELPA 111 Query: 122 LFTVLSNFLEQSRFIALLM---YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 + L N+L++ R A S V R + NL A + ++PS Sbjct: 112 MKECLENWLQRRRREAAAAAGPEEQALSPIQQVLRYMAETPLGDINLTDAARRVHMNPSY 171 Query: 179 LKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 L + K E + VT+ +M+ A ++L I+++A GY+ +YF ++FK Sbjct: 172 LSQLFKQEMQVCFVDYVTDLKMKEAKRLLATTTLRISEIADRLGYADLAYFSNIFKKHTA 231 Query: 238 LTPLNYLAKQRQ 249 +P Y +Q + Sbjct: 232 CSPSEYRKQQAR 243 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 5/137 (3%) Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 AEL RA L + + + + I L VA + Sbjct: 381 AELKRAALDELDRIAAD----LEVWRQQQAYGKLGKAKDYIDRHYAEPLTLEEVAEQAGI 436 Query: 175 SPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 SP K K ++ VT R+ A + L ++++ ++ GY+ +YF VFK Sbjct: 437 SPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAETDQSLKEICFSVGYNDPNYFSRVFK 496 Query: 234 AFYGLTPLNYLAKQRQK 250 GL+P Y K + + Sbjct: 497 KQTGLSPSEYRKKVQAR 513 >UniRef50_A8S4U5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4U5_9CLOT Length = 407 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 11/226 (4%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNII--NDYLLFLNKNLTCVKPWSR 82 + K L A + + L + + +R+I+ D L + R Sbjct: 186 EHRYYYEKLLLQEVAQGSQDLALKY--YRQFSQESRSIVRTEDPLRTAKNLGFSLNTMLR 243 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 + H ++ + + EAE ++ + + F+ ++R Sbjct: 244 KSAETTGIHPVYLDIISSNFAMLIENANSIREAEECKSQMISAYCRFVRKNRL------D 297 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRY 201 S + I+ + L +A + +SPS L + + S S +T+ R+ Sbjct: 298 QYSPLVRKAVTYIRIHLADQLTLAGIAKGIRVSPSYLSRLFNRETGDSVSNFITKARVEK 357 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A +L +I +A G+ +YF FK + +TP Y A Sbjct: 358 AAGLLSFSGMSIQNIAFYVGFGDLNYFSRCFKKYKKMTPTEYRASS 403 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 21/236 (8%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNH--VLITHINRNIINDYLLFLN 71 +K V++ + + A + L +H I +++ ++D +L Sbjct: 299 YDKNVKIRADEQLPIERENKLIEAIKSGDGEKALQAFDHYVQAILRCSKHPLHDMRKYLQ 358 Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE 131 + + RL + + R + H + + S L Sbjct: 359 QLFIIL---GRLLNEMGLHWETAQDFARFSTVHQVTEHGK---------------SEILH 400 Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSY 190 R + S+ + + L +A + LSP + K K + ++ Sbjct: 401 IVRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTF 460 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 S+ VT+ R+ +A Q+L + K++ ++ GY +YF VFK G +P +Y Sbjct: 461 SEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKS 516 >UniRef50_C7H4C8 Two Component Transcriptional Regulator, AraC family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4C8_9FIRM Length = 416 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 12/231 (5%) Query: 22 VNNHATFTLPKNYLAAFACNNNVIELSTLN-HVLITHINRNIINDYLLFLNKNLTCVKPW 80 + L A A + + ++ H T+ R Y + + Sbjct: 196 TMLEQRYESENRILDAVARGDEEAAIEAMHQHSRFTYGGRFEGTLYQQ--KNKMIVLNTL 253 Query: 81 SRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM 140 R A H + + ++ + E+ +++ + ++ R +L Sbjct: 254 LRKAIEPSKVHPYYIDAISSKYSRIIEEAN-----EVPNEMMWQMTRDYCAYVRRYSLKE 308 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 Y V + ++ L+ +A+ +SPS L K E ++ + R+ Sbjct: 309 YSPA---VQKVMNYVNLNVAEPLTLKSLAAMCFISPSYLSALFKQETGSTLIDYINTQRV 365 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 A Q+L+ +N I VA+ G +YF +FK G+TP Y + ++K Sbjct: 366 NRAAQLLVQNNHTIAAVAEEVGILDVNYFTKIFKKTLGVTPTRYRREHKEK 416 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 18/221 (8%) Query: 28 FTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPV 87 + K L A + LS + +H + + L + SR+ + Sbjct: 322 YNAEKELLEAVRQADVNHVLSAFAGFMGSHAEEAQETADIRRSLQELFVL--VSRMLYEL 379 Query: 88 IACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV 147 + + PE+ + + L ++ L R + + Sbjct: 380 GIDYRQVPEL---------------SDYHDSAVLFEQGKNHLLRIVRHVQAWRNSHAKDM 424 Query: 148 RDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQML 206 I++ L A + LSP K K+ ++ VT+ R+R A L Sbjct: 425 LYKAKEYIEAHYAEALTLESAAEYVDLSPFYFSKLFKDRFGMTFIDFVTDVRIRKAKHFL 484 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + ++ ++ GY +YF VFK GL+P Y + Sbjct: 485 KEGSLSLKEICYSIGYKDPNYFSRVFKKHTGLSPTEYRKES 525 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 115/195 (58%), Gaps = 1/195 (0%) Query: 55 ITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCE 114 + I + I+ + LN + + + + +P I +F+ AAN S + E Sbjct: 68 VALITQKTISLLVSALNSD-SLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAE 126 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 R+L+ ++S FL+ FI LLM IL + VC +I S+I + W+L ++AS L + Sbjct: 127 KLRKRSLMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLM 186 Query: 175 SPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKA 234 SPSLLKKKL+ E T+YSQ++TECRM+ A+++L D+ + + A LCGY S SYFI+VF+ Sbjct: 187 SPSLLKKKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRK 246 Query: 235 FYGLTPLNYLAKQRQ 249 +G+TP Y K++ Sbjct: 247 HFGITPTEYQDKRQH 261 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 20/240 (8%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLF 69 V LTE E V ++ F P L FA N ++E + L + L+T + + Sbjct: 123 SVRLTELEHTVQIDILEAF--PLGRLRQFAVENFMVETAILFNSLLTPSHDKTMKA---- 176 Query: 70 LNKNLTCVKP----WSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV 125 N L P ++R + CH P +P R A + ++ Sbjct: 177 -NAELCFEWPEPPYFARYRDRLPRCHFGAPANQIRCEAALLDEPIRTANAHTAQMIV--- 232 Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 Q L S+ + V ++ Y +L +A L LS LK+KL + Sbjct: 233 ------QQCEAELARLGYAESIVERVRNLLIRGNNGYPSLDALARELHLSERTLKRKLSD 286 Query: 186 ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +YS ++ E R+R A+++L + + ++A GY+ + F F+ + G +P + Sbjct: 287 YGATYSALLDEIRLRDALRLLEGTHLTVEEIAARVGYTDRANFSRAFRRWTGTSPSSRRR 346 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 83/218 (38%), Gaps = 5/218 (2%) Query: 34 YLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSR 93 + ++ + VL +++ + + R ++ Sbjct: 190 LFVHIHKEPSTDDVDGMKSVLASNLTKITATATFNLYKNLYAILLYPLRTQGDESLLNAV 249 Query: 94 TPEVFRLAANHSKQQPSRPCEAELTRALLFT----VLSNFLEQSRFIALLMYILRSSVRD 149 P++ L KQ + L + + +FL + + + + + Sbjct: 250 KPQILLLKTQLRKQCQAPITLTTSLPFLFWEEGPKIYQSFLSGTSPLVQEVRHKKEQLAV 309 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 V +++ +L+ VA L L+ + L K+ K E +S + RM AV++L Sbjct: 310 RVYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMDRAVELLAE 369 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 N ++Q+A+ GY SYFI VFK + +TP + ++ Sbjct: 370 TNMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 10/222 (4%) Query: 27 TFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATP 86 + +S N + + D K L V R A Sbjct: 317 PVDTENKLFRMLLKGDLNAMVSAAN-QFFDWMVKCYPEDKNNIRLKVLEFVTWGEREAFH 375 Query: 87 VIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSS 146 V A + + ++ T S I S Sbjct: 376 VGAVNYGFNSRRGYLDTVMALEDYEDIRTWFLEKMMQTCCS--------IRDKNEDRSES 427 Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 + + +Q + +L V+ + +SP K K E ++++ +T R+ A ++ Sbjct: 428 LVEKARSYMQENYSREISLDDVSKEVNVSPYYFSKIFKEESGENFTEYLTNIRIGKAKEL 487 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 L +I ++ + GY+ +YF +FK G+TP Y + Sbjct: 488 LENPELSIKEIGVMSGYTDPNYFSRIFKKHTGITPREYRERY 529 >UniRef50_A4XMG0 Two component transcriptional regulator, AraC family n=2 Tax=Thermoanaerobacterales RepID=A4XMG0_CALS8 Length = 529 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 92/213 (43%), Gaps = 18/213 (8%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR----------LATPVIACHSRTP 95 E S +N +L+ +++I D + +L +++ L + + CH + Sbjct: 323 ERSIINSLLLCQ--KDVIKDKVESFINSLYSTNTFNKWFIKSAVLALLGSLIKVCHEKCI 380 Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRII 155 ++ + ++ + + + EL +A L + L+ +++ I ++ + + I Sbjct: 381 DLNDVVSSKIFENILKTEKKELIKASLLSFLNATVDKIEQIE-----NKNLIVKAAISFI 435 Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNIT 214 + + L VA + ++P+ L K E ++ + + R++ A ++L N Sbjct: 436 EKNYNKNITLESVAKEVYVTPAYLSILFKRELKINFVDYLHKIRIQKAQELLKNQNLKTY 495 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 QVA + G+S YF VFK + GLTP + Sbjct: 496 QVANMVGFSDEKYFSQVFKKYTGLTPSQFREAN 528 >UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G3_9FIRM Length = 532 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 9/192 (4%) Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQ------PSRPCEA 115 I F+ + P + ++ + + R + S EA Sbjct: 333 IRQSINRFIGRFYETRLPIGQYQLYLMELTAELVRLARAYQLDTADVFGPDFAASLRLEA 392 Query: 116 ELTRALLFTVLSNF-LEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLC 173 + L LS L S I + + + I ++ ++ L Sbjct: 393 FDSLDELKARLSELCLRISELIRRERSNSTRGIAEGAKQFIAEHFSDPDISVEMLCDHLH 452 Query: 174 LSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVF 232 +SP+ K E S+ +T RM AV++L +++ GY+ +YF VF Sbjct: 453 VSPAYFSTLFKKETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGYTEPNYFSYVF 512 Query: 233 KAFYGLTPLNYL 244 K +G++P Y Sbjct: 513 KKQFGMSPTKYR 524 >UniRef50_A9U7M3 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7M3_PHYPA Length = 385 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 90/241 (37%), Gaps = 8/241 (3%) Query: 12 ILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNH-VLITHINRNIINDYLLFL 70 + EK E + + + L+ + + + + + I N+ L Sbjct: 144 TVKEKTDEAILAINDRYRTENKLLSVIENGSIEKLEAMQEELAIFSKLPDRIPNNPLRSR 203 Query: 71 NKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFL 130 R A H + Q + + L +L + Sbjct: 204 KNLAFVTNTLLRKAAEQGGVHPVYIDSIS---EKFAIQIEKTTSIQQLSNLHDKMLYEYC 260 Query: 131 EQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTS 189 E R ++L Y V + I+ + L +A+++ +SPS L ++ K E Sbjct: 261 ETVRKLSLKYYS---PVIRTAIEYIRLHLAEPLRLEAIATAVHVSPSDLSRQFKKETGQP 317 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + + R+R A+Q++ + +IT +AQ+ G+S +YF VFK G+TP +Y + Sbjct: 318 LTSYINSLRIREALQIIRSEPISITDIAQMVGFSDVNYFTKVFKQLQGVTPSDYRKTLQC 377 Query: 250 K 250 K Sbjct: 378 K 378 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 1/154 (0%) Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRII 155 + F+ + + + + +L+ F++ ++ + V I Sbjct: 92 DDFKFVQKALRIKVDDYLLKPIRPQKIVDILNEFIKDNKKRIEESNKNCTEEFQEVVEYI 151 Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNIT 214 + ++ L+ VA + S S L K K E ++++ +T+ R+ A ++L+ N +I Sbjct: 152 DKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILINSNISIN 211 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 ++A GY+ +YF VFK +TP Y R Sbjct: 212 EIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_D1PII7 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PII7_9FIRM Length = 406 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 76/229 (33%), Gaps = 9/229 (3%) Query: 22 VNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWS 81 + L L A A + L+ + + + D + + + Sbjct: 181 QRLEMRYQLEDAMLQAVADGDRARLHQLLHDADLNVAVEHRLADPVRNIKNYCIVLNTVL 240 Query: 82 RLATPVIACHSRTPEVF-RLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM 140 R A H + R A +Q P+ L + + S Sbjct: 241 RKAAQRGGVHPIYLDDLSRTCAARIEQLPTTGAAQRLVQEIADQYCLLVQRHS------- 293 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 + + ++ + +LR VA +L + S + K E + + + + RM Sbjct: 294 TQGYTEPVQTAMLYVRQHLAEPLSLRTVAGALDCNASYFSARFKKETGHTLTGFILQERM 353 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 R A+ +LL + +AQ CG+ +YF +F+ G +P Y R Sbjct: 354 RLAISLLLSTRLQVQTIAQHCGFLDVNYFSRIFRQTTGCSPSEYRKTGR 402 >UniRef50_C6IZZ6 Transcriptional regulator n=2 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZZ6_9BACL Length = 776 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 12/245 (4%) Query: 7 EPCVVI-LTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIND 65 E C V+ L E H F L K L A + I I Sbjct: 542 EQCQVLDLEEILPYTPQEVHYPFALEKELLQALRMGQCEQAMQ--------LIEAFISEL 593 Query: 66 YLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV 125 L + L L + + + +L + + E + + F Sbjct: 594 VLHSGKEKLLKEGVMQVLGSIMHTLLETGYQPHQLYEGDNPFEQLNQI-REPEQIVRFFQ 652 Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 L ++ ++ + + V +++ +L A +P L + K Sbjct: 653 QKIILPYAQKLSEDQTARAKPLIEQVTAMLKDQFAAGISLEACAHHFNTTPYTLSRLFKQ 712 Query: 186 -ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++ VT R+ A ++L + + ++A+ G SYFI +FK F +TP Y Sbjct: 713 VTGINFIDYVTALRIEKAKELLRDSDMKVNEIAEQVGLQ-PSYFIRLFKRFEQITPGQYR 771 Query: 245 AKQRQ 249 K + Sbjct: 772 EKVMK 776 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 70/219 (31%), Gaps = 19/219 (8%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 K + L+ +++I + + + + Sbjct: 312 EKRLFDVVREGDFKQALTQC----LSYIEEIAFHHPFPIVKQKMEETFILL--------- 358 Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 R F ++ + S EL R + +I + + Sbjct: 359 -GRMLTDFGISYERTTTFHSCGSLEELKRTATEQL----QHMVHYIQAWRHQQANGKIGK 413 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 I H L VA + +SP K K+ ++ VTE R+ A + + Sbjct: 414 AKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDYVTEVRIARAKKEMADP 473 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 NK++ ++ L GY+ +YF VFK G++P Y K Sbjct: 474 NKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKKLH 512 >UniRef50_B6FKZ8 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ8_9CLOT Length = 540 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 83/238 (34%), Gaps = 10/238 (4%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKN 73 ++ E + + P+ L F N E+ + I+ I I ++ Sbjct: 311 SQMEEGLKMQGVVQIGKPREMLQKFLSNGTREEVKAFSDAYISRIEEENIRSTMVRQYVV 370 Query: 74 LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQS 133 + + + + E L K + + +L+ +E Sbjct: 371 IDVCIVILSFCERISSANRLQEEAEELQKMMQKIHSLSEIKK-----YVVRLLNEAIELR 425 Query: 134 RFIALLMYILRSSVRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYS 191 + Y + + + I++ +L VA S+ +SPS E ++ Sbjct: 426 DAESGRRYS---DLIAAAKKEIENHYMTEEISLNTVAISVGMSPSYFSSIFSKEAGKTFV 482 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + +TE R+ A + L+ + +++ GY YF +FK G +P Y A+ ++ Sbjct: 483 EYLTEVRIEKAKEFLMCSSMKTSEIGYEVGYKDPHYFSYIFKKVQGCSPKEYRARGKE 540 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-N 187 E + ++ + + + IQ L V++ + S S K E Sbjct: 413 LSEAMQVLSEQKRQADTRPIRTAKQYIQEHYADPLTLEWVSNIVGFSGSYFSSLFKKETG 472 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ + ++E RM A ++L N ++ +V GYS YF FK GL P + Sbjct: 473 QNFLEYLSEVRMNRAKELLRETNLSVAEVCVRVGYSDLKYFTKSFKKATGLKPGEFRK 530 >UniRef50_C0D3A6 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3A6_9CLOT Length = 505 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 18/237 (7%) Query: 17 EVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTC 76 + + F P + A N EL + + I ++ FLN Sbjct: 280 DERIRELAIQKFIYPSDLEQAIIRRINTGELGEI---------EDDIRAFVRFLN---DK 327 Query: 77 VKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLF-----TVLSNFLE 131 + + ++ R A+ + S + R LLF ++ N L Sbjct: 328 TYACADIREALVCLTVAVLYAIRKASYGVYENISHLNLMDWIRQLLFTDHYIQIMMNVLM 387 Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSY 190 Q R ++ + RII + +L +A SL ++P L E + Sbjct: 388 QYRHYHDGLHHNAHPLVQKALRIIDQGYKGELSLEEIAGSLSVTPEYLSTLFIRELGIKF 447 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + T+ R+ A +L N+ I +VA GY YF VFK + GL+P Y Q Sbjct: 448 TTYCTQRRIECAKHLLADPNRKIYEVAGESGYGDVKYFCKVFKKYTGLSPGEYQKNQ 504 >UniRef50_UPI0001C35B7C two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35B7C Length = 411 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 15/230 (6%) Query: 21 SVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNII---NDYLLFLNKNLTCV 77 +++ + + A + +N + LN L + NR +I D L + Sbjct: 188 TISLEKRYEAENQLMQAVSQDNQEL----LNQALASFENRRLIPRLADSLRDYKNYMVIY 243 Query: 78 KPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIA 137 R A H + + + P + L + + + + Sbjct: 244 NTILRKAAEQGYVHPVYLDEISSKYAKKIENLTTPQDTSLMKEM-------ARKYCLLVR 296 Query: 138 LLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTE 196 S V V I ++ L+ ++ +S + L K E + + V + Sbjct: 297 NYSVRGYSPVIQKVINQINLNLTSDLGLKDLSEMFHISANYLSSLFKKEMGITLTDYVNK 356 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 R+ AV L + I +A CG +YF +FK F G+TP + + Sbjct: 357 RRVEQAVFYLNTTDMQIQTIASYCGIQDINYFTRIFKKFIGMTPSKFREQ 406 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 149 bits (377), Expect = 8e-35, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 96/249 (38%), Gaps = 7/249 (2%) Query: 6 SEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHV-LITHINRNIIN 64 P +++ ++ F P+ + ++ S + +++ R Sbjct: 245 DLPDNSSISQIYTQLEKRLENHFFFPEQNIFLPDGPDHPYAASGHISIDIVSDDLRLKDY 304 Query: 65 DYLLFLNKNLTCVKPWSRLATPV---IACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 D L+ ++L + + + E+ + K ++ E + A Sbjct: 305 DSLMHHLEDLFESLKHEKTHSLIFVKYCFTELMKEIIHYLPDDQKPDLNKVAEKIYSSAN 364 Query: 122 LFTVLSNFLEQSRFIALLMYILRSS--VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 + ++ Q++ + + S D + + I + +L ++S +SP+ L Sbjct: 365 IVELMDMTCSQAKKLLSQTQKNQGSCLKSDKIRQYIYQNYTQPLSLNDISSHFYISPNYL 424 Query: 180 KKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 K E + + + E R+ A ++LL + ++A+ G+S+ SYF F+ +YG Sbjct: 425 CSVFKKETGCNLMKFINEYRLEQAAKLLLETEMKVNKIAETVGFSNPSYFSQRFRDYYGE 484 Query: 239 TPLNYLAKQ 247 +P NY K+ Sbjct: 485 SPENYRQKE 493 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 149 bits (377), Expect = 8e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 9/222 (4%) Query: 26 ATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLAT 85 ++ K L + + + LN ++ + + N + + + A+ Sbjct: 198 YSYETEKELLLKVRNGDIIGAKNILNDMIGRILFASGGN--INIIKSKTLELCTLLSRAS 255 Query: 86 PVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS 145 S T + + S E + +L +F ++ + Sbjct: 256 IDGGADSNTIIDLNSKFLY---KISNIKNIEDLSYWVIHMLDSF---TQNVFNFNESKNP 309 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 + I NL +A+ + L+PS K E S+S + + R+ + Sbjct: 310 VLIQKCISYINEHYNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKL 369 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +L + +I ++A G+ SYF VFK +TP Y Sbjct: 370 LLKNTDSSIVEIALEVGFEDQSYFSKVFKNLTKMTPKQYRQN 411 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 95 PEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRI 154 P V + +P E R+++ ++LS+ + A ++ +++ + Sbjct: 122 PRVGSFLLQALNELRMQPQEQRTARSIVVSLLSHCHDLLGSQAQ-TSSRSQALFEAIRQY 180 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNI 213 + + + VA + LSP+ L + +++ + R+ A +L + + Sbjct: 181 MDAHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV 240 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 +A CG++ ++YF +F+ +P Y + ++ Sbjct: 241 KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQL 278 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 26/242 (10%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLF 69 V LT+++ V ++ F L L FA N ++E + L + L+ + Sbjct: 25 SVRLTQRDGIVDIDVLEAFAL--GRLRQFAVENFLVETAILFNSLLDPAPGRTLQS---- 78 Query: 70 LNKNLTCVKP----WSRLATPVIACHSRTPEV-FRLAANHSKQQP--SRPCEAELTRALL 122 L P + R + CH R A + + A++ Sbjct: 79 -RAELHFEWPEPPWFERYRARLPRCHFNASANRIRCDAALLDEPIGTANAQTAQMIVQQC 137 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 L+ S+ + V ++ Y ++ VA L +S LK+K Sbjct: 138 EAELARL------------GYAESIVERVRNLLICGDAGYPSVDDVARELHVSARTLKRK 185 Query: 183 LKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 L +YS ++ E R+R A+++L + ++A GY+ + F FK + G+ P Sbjct: 186 LAEFGATYSTLLDEIRLRDALRLLEGTRLPVDEIAARVGYTDRANFTRAFKRWTGVAPSE 245 Query: 243 YL 244 Sbjct: 246 RR 247 >UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYS4_9BACL Length = 527 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 24/217 (11%) Query: 52 HVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSR 111 +IT N + LL ++ RLA ++A TPE ++ + R Sbjct: 304 KTVITQEEENELGSILLEQDRMALRAWTH-RLADELVADPECTPESYQACLQSAAVAAHR 362 Query: 112 PCEAELTRALLFTVLSNFL--------------EQSRFIALLMYILRSSV-------RDS 150 E L RAL + F E R + +M + + Sbjct: 363 WLERTL-RALGKEGAARFAPWLQQHIGGAKLKDELFRHLHAVMSLYHGQLGEGQASHVQR 421 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 ++S +L+ VA+ + L PS L + K E +++ VT RMR A+++L + Sbjct: 422 AKAYMESCPAEELSLQQVAAYVHLHPSHLSELFKKETGSTFGYYVTALRMRRAMELLAVS 481 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 ++++A L GY YF +FK G TP + + Sbjct: 482 PAKVSEIAGLTGYEDVKYFSRLFKKHTGKTPSEFREE 518 >UniRef50_C4Z3B2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B2_EUBE2 Length = 514 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 83/219 (37%), Gaps = 14/219 (6%) Query: 40 CNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFR 99 + + + + L+ + ++I + FL + + R + + + VF Sbjct: 294 SEDTPVLVQIDDDALMKQMKQDIKMKDITFLRIHFDALCKKYRGQSNFSHIYIKF--VFS 351 Query: 100 LAANHSKQQPSRPCEAELTRAL-----------LFTVLSNFLEQSRFIALLMYILRSSVR 148 EAE R + + +++N+++ Sbjct: 352 NLLKDFYDNIPGADEAEFGREIDRLYKSEDFSCIMDIVNNYIDLLEKSFGKEPATSHREI 411 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 ++V I + + +A + L+PS L K E + S+ + + RM A ++L Sbjct: 412 ETVKNYIHNHYGEEIGAQQLADMVYLAPSYLSSLFKKETGQNLSKYIKQYRMEKAKELLT 471 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 N I +++ GY + SYF+ F+ ++G++P + + Sbjct: 472 GTNMKIVNISEQVGYPNVSYFVQSFREYFGISPQKFRDQ 510 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 124 TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 +S L + + ++ + + + + ++ +L+ +A LS + +K Sbjct: 412 EQISGRLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKF 471 Query: 184 KNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLN 242 K E + S + R+ A +LL I Q+A++ GY YF VFK G TP Sbjct: 472 KQEFGVTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNE 531 Query: 243 YLAKQRQ 249 Y K Sbjct: 532 YRKKHMN 538 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPS 177 L +L L+ + + I ++ ++ + + L LS + Sbjct: 402 EELGRWLLERCLKLRELLGRQRTDSAWKTVEQAKAFIAANYADCDLSVESMCAHLHLSAT 461 Query: 178 LLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 K E S++ VTE RM A +ML ++ +A+ GY+ +YF VFK + Sbjct: 462 YFSALFKRETGQSFTAYVTELRMDQAARMLRDTDEKTYLIAEKTGYTDPNYFSYVFKRHF 521 Query: 237 GLTPLNYLAKQR 248 G+TP Y A QR Sbjct: 522 GVTPSKYRAGQR 533 >UniRef50_UPI0001973B3B response regulator receiver protein n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973B3B Length = 369 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 16/224 (7%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLN---KNLTCVKPWSRLATPV 87 + + F +V E T + N LL CV+ + R Sbjct: 156 DRRLIEEFLKLGSVDECETFVEEYFAAVGENNYKSLLLRQYMVVDIFYCVQEFVRN---- 211 Query: 88 IACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV 147 + PE FR K+ P E E T+ L + LE ++ Y V Sbjct: 212 LGIEEELPESFR----DIKRIPQAITEVEKTKHYLVGLFGCALEVRDRVSSDRYGQ---V 264 Query: 148 RDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 I+ + ++L +VA+ + +SPS + E ++ + +T R+ A +M Sbjct: 265 IREAKSFIKENFSRGDFSLNLVAAHIGVSPSYFSSIFRQETGQTFVEYLTRVRIDSACEM 324 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 L N ++ + GY+ YF S FK G++P Y RQ Sbjct: 325 LKCTNLRTAEIGERAGYNDPHYFSSAFKKVMGMSPKEYKTSVRQ 368 >UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NBQ5_EUBSP Length = 563 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 21/240 (8%) Query: 17 EVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTC 76 + + + + A NN + I+ + L + Sbjct: 338 DTTARLQLEE--QDERLLMNAVKSNNMEKA-------------QKQISRFFERLEQARLP 382 Query: 77 VKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFI 136 + + + V++L N + S EA L L + F++ R I Sbjct: 383 FCQYQMYILEIFTVLMKLVNVYQLDTNVVFKGASDYIEAVLGLHSLEEIKDWFIQACRQI 442 Query: 137 ALLMYILRS----SVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSY 190 L+ R + + + + + +++ + SL +SP+ K E ++ Sbjct: 443 GTLIQKERMASGKMLVEKARQYVDENYADAEFSVETLCESLHISPAYFSTIFKKEAGINF 502 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +T+ RM+ A+++L ++ +A GYS +YF FK G++P Y R + Sbjct: 503 ISYLTDVRMKEAMRLLDETDEKTYMIAAKVGYSEPNYFSYAFKKQVGVSPSRYRKGLRDQ 562 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 1/142 (0%) Query: 111 RPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVAS 170 R + V+ F+ ++ + D + IQ L VA Sbjct: 379 RKIDEARYAGEAIAVVEAFIREAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVAR 438 Query: 171 SLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFI 229 + S L + +S+ + + R+ A+++LL I++++ GYS SYF Sbjct: 439 QFHFNASYLSSYFASYNGEGFSEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFT 498 Query: 230 SVFKAFYGLTPLNYLAKQRQKV 251 VFK G++P + + +++ Sbjct: 499 KVFKKQTGISPSQFRRQNAREI 520 >UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J070_9BACL Length = 523 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 80/249 (32%), Gaps = 20/249 (8%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTL--PKNYLAAFACNNNVIELSTLNHVLITHI 58 +++ + E +V + + + L K L A + + L+ Sbjct: 288 VRVCAEEQDIVCVRHYDDIAESSGGPAIPLDEEKKLLDALLRQDKPEAAERFD--LLFER 345 Query: 59 NRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELT 118 + +DY L ++ + + + A + E T Sbjct: 346 LKGGRSDYFPRLRGDVIGLLLYLSR---------------GVEAGDGPELIEDLSACEDT 390 Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 +L L + RS V + + ++ A + LSP Sbjct: 391 ASLRERALHRLGGWIDGLRERKERSRSHVLQRALLFVNQRFKEEISMEQTAEYVNLSPYY 450 Query: 179 LKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 K K ++S +T R+ A +++ + ++ ++ GY +YF VFK G Sbjct: 451 FSKLFKLQTGENFSDYLTRLRIEEAKRLIAGRSLSLKEICYEVGYKDPNYFSRVFKKSVG 510 Query: 238 LTPLNYLAK 246 +TP Y + Sbjct: 511 ITPSEYRQQ 519 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 1/135 (0%) Query: 113 CEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSL 172 C +T + + L + + + I+ + +L VA L Sbjct: 383 CTEAVTLREMEQSYRDGLALLCSPRRMKEDISNYTIKRAINYIREHYKEGISLEEVAGRL 442 Query: 173 CLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISV 231 ++P L E ++S + + R+ +A ++L + + ++A+ GY+ YF V Sbjct: 443 GITPEYLSTLFNREMGENFSTFLRKFRISHAKRLLKGTDMKVYEIAEEVGYTDPKYFARV 502 Query: 232 FKAFYGLTPLNYLAK 246 FK G++P +Y + Sbjct: 503 FKEELGISPGDYRQQ 517 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 70/186 (37%), Gaps = 9/186 (4%) Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL----LFTV 125 + + + +R + R + + + + + + Sbjct: 344 FFEWMHSQQTVTREDIEIKILEMVMNAERRAFFAGTLKYNVNSRRSYIRELQSCTDIENL 403 Query: 126 LSNFLEQSR----FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 FL+++R + S+ D I + + +L V+ + +SP K Sbjct: 404 KKWFLDKTREICTKLENSKEKEAGSIIDRAKEYINENFRRDISLDDVSREVDISPYYFSK 463 Query: 182 KLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 K E ++ + +TE R++ A ++L +I ++ GYS +YF +FK + G+TP Sbjct: 464 LFKQETGKNFIEYLTEIRLKNARELLQDSRLSIKEICAQSGYSDPNYFSRIFKKYEGVTP 523 Query: 241 LNYLAK 246 + + Sbjct: 524 SEFRER 529 >UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LII8_9FIRM Length = 502 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 18/219 (8%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATP-----VIACHSRTPEVFRL 100 EL N + ++ Y + + + + A V + + F L Sbjct: 286 ELFKKNELWKNAFTEFNMHLYQAKGYQRYELLDEFLKNAASWRILAVESLCGLCRDTFEL 345 Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIAL----------LMYILRSSVRDS 150 +K ++ R + +S LE++R I L +S Sbjct: 346 LEFEAKGNGISLTGTDILREQMEECIS--LEEARRIMEAFAGQCHLTELQNAPKSKNIQL 403 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMD 209 I + +L VA+S+ L+P + K ++ +T+ R+ +V +L Sbjct: 404 AVEYINAHYAEQLSLEQVAASVYLNPDYFSRAFKMETGQTFVNYLTDVRLSRSVWLLENT 463 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + +AQ GY + SYF ++FK YG++P Y K++ Sbjct: 464 ALRVQMIAQQVGYYNASYFSTIFKKKYGMSPYEYRRKEK 502 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 2/177 (1%) Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 ++++LT L A S P + + + Q+ LS Sbjct: 347 MSESLTIRSAQKELRKLGAAAGSEWPAITTASPLLADQRAIDSVMTLSALHAYVAELSAA 406 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENT 188 +E + + + + + L +A+ + PS L ++ K Sbjct: 407 IEAHIRARASSSDASNPMSE-IVAYLDGHYFEDVGLIDMATRYHMDPSYLSRQFKAATGV 465 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ + VT RM A ++L ++ ++ +A+L GY + YF VFK F G TP + Sbjct: 466 NFIEYVTRKRMEKACELLRESDRKVSDIAELVGYENQRYFSQVFKKFTGQTPSEFRE 522 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 12/221 (5%) Query: 26 ATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLAT 85 + ++ + + N + + D K + + R + Sbjct: 316 YPINKERLFIDRLMTGDLQGSFTIFNEIYEWMVFEYQ-EDIDKIKAKLIEIIGVIKRNLS 374 Query: 86 PVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS 145 E N ++ + + + + + L N E I + Sbjct: 375 Y-------YAEDENFIENRELEEILKINDVDKIKFIFINTLKNLFE---NIKTINKEKMD 424 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQ 204 + + R I+ + L VA + +S K K ++ +T R+ A + Sbjct: 425 TFIAKIIRFIEDNFNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFIDYLTNLRVTKAKE 484 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +L + +I +V GYS +YF +FK G+TP Y + Sbjct: 485 LLEDETVSIKEVCYKVGYSDPNYFSKIFKKATGMTPTEYRS 525 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 5/187 (2%) Query: 66 YLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFR-LAANHSKQQPSRPCEAELTRALLFT 124 + L P+S L H + P+ R N + P L L+ Sbjct: 95 FNGACANKLVQQTPFSDLH---PVHHCKDPQAVREALYNIYLSRGPEPQCEALMTGYLYI 151 Query: 125 VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL- 183 +++ ++++R + S S + IQ + H ++ +A ++ +S S L + Sbjct: 152 FMAHLMKEARDAMPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYRVFM 211 Query: 184 KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 N S +T R+ A +L N +I ++A G+ YF VFK G+ P Y Sbjct: 212 ANVGQSPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKY 271 Query: 244 LAKQRQK 250 LA ++ Sbjct: 272 LATLEKE 278 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 85/215 (39%), Gaps = 7/215 (3%) Query: 32 KNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 + + ++ L L ++ I N+ L + + + + V Sbjct: 317 EEMIEFLQLGDSQKALQLL-KEVVGEILTTTKNNLLECQINLIEIMMRIVKTISEVGMLT 375 Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 VF+ +H + + + R + S FLE+ + +++ + V Sbjct: 376 GEEGRVFQFCFSHLQ----KLMRTQNYRGITLWATS-FLEEISDLFAGAKRNENNIVERV 430 Query: 152 CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDN 210 + I + + L+ ++ ++ L+P + K E +Y++ +T R+ A + L + Sbjct: 431 VKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIEAAKKYLANPS 490 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 I+++A+ GY +YF VFK G++P + Sbjct: 491 LTISEIARKVGYQDANYFSKVFKKVVGISPSEFRK 525 >UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFA6_VIBFU Length = 268 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 90/236 (38%), Gaps = 5/236 (2%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLF 69 +++ K + N L +NY+ + + + + N L + + Y Sbjct: 37 ELMIVTKGAGQHILNDVPINLAQNYICYISPKDRHLFEQSDNLHLTNILFQKNKLAYSPL 96 Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 L + + S +V L A + E+ L LF L Sbjct: 97 LK---SVLPKESDAQQSWYISTETMKKVCTLMAQIEHESSLHSVESRLMTEALFQQLVVE 153 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENT 188 + + R + +S+ + IQ++ +N+ ++ +S L +++K N Sbjct: 154 ISRGRLTSQSNNASDNSIL-KIIDWIQNNYAEEFNVGDISDQFEISSRTLSRRIKQVTNL 212 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 S++ V R+ +A+ +L + ++T +A GY ++YF + FK F TP + Sbjct: 213 SFNNYVHRVRINHAMNLLHYSDLSVTDIAFQVGYKDSNYFSTKFKRFTNKTPTEFR 268 >UniRef50_C6D6D8 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6D8_PAESJ Length = 413 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 8/219 (3%) Query: 27 TFTLPKNYLAAFACNNNVIELSTLNHVL-ITHINRNIINDYLLFLNKNLTCVKPWSRLAT 85 + K + A + + I + + L R+A Sbjct: 195 RYRYEKTVMNAITKGDTTAVKKMVKEAAGIFELPDRFPESPIRSAKNLLIVSNTICRIAA 254 Query: 86 PVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS 145 P + R + + ++ + E + S Sbjct: 255 ERGGM---KPMQLHTISERFAIMIERASNLPHIKKIGERIMIEYCE---AVKEDSTKQYS 308 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQ 204 I + L +A ++ +S S L ++ K ++ V R+ + Sbjct: 309 ISIRKAVDYISLHLDQPLTLSGLAETVEVSASHLSRQFKLETGMGFTDYVNWKRIEESKL 368 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 L IT +A L G++ +YF VFK + TP Y Sbjct: 369 YLQSGTLPITDIAFLVGFNDLNYFGRVFKKYTDRTPSQY 407 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 2/176 (1%) Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 + ++ ++ R + A ++ S A ++ Sbjct: 348 FKNQASALEEEKLQLMEMLLLARRMVQDQGGAPVRDQELLSALLAAGEEETARQKFVAAM 407 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NT 188 +E ++ + ++ + I+ + + +L VA ++ +SP K K E Sbjct: 408 VELAQAV-VIKNQEPDGIITRAQDYIRQNFRKDISLEEVARTVGISPYYFSKLFKEEAGM 466 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++++ +T R+ A ++L +I QV GY++ +YF +FK + G+TP + Sbjct: 467 NFTEYLTGIRIETAKRLLSERELSIKQVCVDSGYANPNYFSRIFKKWVGITPTEFR 522 >UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32_CHLAA Length = 1202 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 + L LE+ R + + I S H + +A + +S Sbjct: 1070 FSADETLAHLQAALERRRRL----SDQAQMLVRKAMAYIHSHYTHPLTRQDIAHYVGMSE 1125 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 L + E T+ + + R+ A +L +K+IT +A G+SS+SYF VF+ Sbjct: 1126 DYLTHCFRQELGTTPVEYLNRYRVLQARHLLAESDKSITNIALEVGFSSSSYFSRVFRKE 1185 Query: 236 YGLTPLNYLAKQRQKV 251 G +P Y ++ V Sbjct: 1186 VGQSPEEYRRLKQSSV 1201 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 7/235 (2%) Query: 9 CVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLL 68 C +IL V + K N + S +H++I + +ND+ Sbjct: 5 CSIILVLNSFGVRI-GKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVNDFF- 62 Query: 69 FLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSN 128 KN T R P E F L N ++ R + Sbjct: 63 ---KNYTLSPFSVRRFYPSYLIVEC--EDFSLLKNLVACLNCDSKTVDVVRNQISLACLA 117 Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT 188 L + + ++ +S+ V II SDI W L ++S L +S SLLK+KLK+E Sbjct: 118 VLSSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGL 177 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 S+S+++ E RM A ++L+ N + +VA +CGY + SYF+SVF+ ++G+ P Y Sbjct: 178 SFSKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQY 232 >UniRef50_C6LB63 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LB63_9FIRM Length = 517 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 13/218 (5%) Query: 44 VIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRL--- 100 + E++ L + ++ I +N I L + +L P C + +F++ Sbjct: 300 IEEIADLLNPMLEKIKQNDIISAFQMLK-SAVVKNMEDKLPEPGKLCRAVMLLLFQIVKA 358 Query: 101 --------AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVC 152 + + R +++ LL V LE + I I V + Sbjct: 359 LDSMMSEEMKQKTDESLMRIYQSQTLERLLRFVYGFLLEIGKNINFQKEIRGVDVLEHCR 418 Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNK 211 ++ + ++A + S KN S+S +TE RM+ A + L+ + Sbjct: 419 EYLEKHYMDEITMEMIAEKYYFNASYFSTVFKNYFGKSFSGYMTELRMQKAKEFLISTDW 478 Query: 212 NITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 I ++A GY +YFI FK FYG TP Y Q Sbjct: 479 KIKEIASKTGYRDANYFIRAFKKFYGYTPEEYRKLSAQ 516 >UniRef50_A4XMF1 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMF1_CALS8 Length = 518 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 1/216 (0%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 + N + ++N+ + N IN + ++ +I Sbjct: 297 ENEHSLLLIENLEAKLIHSINNPTQVPLIENYINQLHKLYVEVFGENNLKYKMIKLIIML 356 Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 T + + + ++ + A+ R L + + I+ + + Sbjct: 357 LLETGAINKEESFDIEKVITEILNADAHRILETSKRAILALFGNAKVTHEQIIHNDSINK 416 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMD 209 I + +L +++ +P K K SY +T+ R++ A ++L Sbjct: 417 AIDFINQNYNQEISLAQISAIFNFNPYYFSKLFKKYTGVSYKTYLTKLRIQKACELLKNS 476 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +K+I ++A + G+S +YFI FK F G+TP + Sbjct: 477 SKSIKEIAFMVGFSDPNYFIKAFKKFVGVTPSFFRN 512 >UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=Klebsiella RepID=B5XY24_KLEP3 Length = 277 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 2/146 (1%) Query: 104 HSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW 163 S + S + R ++ +LS+ EQ + + + R V ++ ++ Sbjct: 128 LSLNEVSLQPDPLTARLVVAALLSHCREQLVGLEMRVSRSRDLFLA-VQDYLEENLSLPL 186 Query: 164 NLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 VA ++P+ L + +++ +T R+ A Q+L + + ++A CG+ Sbjct: 187 TRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEIAHNCGF 246 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQR 248 ++YF VFK + +P Y R Sbjct: 247 VDSNYFCRVFKRYTERSPSEYRRHCR 272 >UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=Clostridiales RepID=C5EPF6_9FIRM Length = 550 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 9/222 (4%) Query: 32 KNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 + L F E ++ ++ + C + Sbjct: 336 RKTLENFLKQGTSEEARGFVEEYFQNVGEKNYQSFMFRQYIIMDCYLCVRTFLEELGMDM 395 Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 + PE E+ AL +++ F S V + Sbjct: 396 LKLPE-------GVADMDMVLKESHSITALKESLIRLFEGTMLLRDSQTASKYSQVLEEA 448 Query: 152 CRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 I+ + +L VA+ + +SPS E ++ + +T RM A ++L+ Sbjct: 449 RAFIRENYAKEEISLNTVAARVNISPSYFSSIFSQEMGVTFVEYLTGVRMERAKELLMCS 508 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 N T++ GY + YF +FK G TP Y A R+++ Sbjct: 509 NMKTTEIGYEVGYKDSHYFGYLFKKTVGCTPKEYRAGSRERL 550 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRM 199 S+ +++ +I+ + + NL +A + S L K S+ Q +T+ RM Sbjct: 420 TREEPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRM 479 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 AVQ+L +++ +A+L G+S+ SYF + FK +G++P Y K + Sbjct: 480 NKAVQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQKDKN 529 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 3/205 (1%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHS 105 E+ R ++++Y +++++ +I + E+ +AA H Sbjct: 333 EIRQAFASGNAKDLRRLLDEYQARVDRSVDITISQVHRELAIIR-EAAVSEMRGIAAAHP 391 Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSR-FIALLMYILRSSVRDSVCRIIQSDIQHYWN 164 + A L +L+ + + + + A S + + + + + Sbjct: 392 PLYDAAAITEVTDPAELRRLLAGWADAAEEYGADRRETDSSQLIWHIVDYLDAHYFEDIS 451 Query: 165 LRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L VA+ L PS L K K+ + ++ + VT R+ A ++L + I+++++L GY Sbjct: 452 LIDVATRFHLDPSYLSKLFKSVTSENFIEYVTRKRIEKACELLRSSERKISEISELIGYE 511 Query: 224 STSYFISVFKAFYGLTPLNYLAKQR 248 + YF VFK G TP Y Q+ Sbjct: 512 NQRYFSQVFKKSTGQTPSEYREAQQ 536 >UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUN9_9FIRM Length = 493 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 15/236 (6%) Query: 26 ATFTLPKNYLAAFACNNNVI------ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKP 79 + + C + + L L+ H+ I + L+ +L Sbjct: 247 YEWEWDEERARQIFCQDESESPQSDPATAKLVDQLVGHLYEAIDKQNSIKLDADLDSFLA 306 Query: 80 WSR----LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRF 135 + + V+ + F + +N + P+ + + L F +LS L++S Sbjct: 307 FCQERELAPQEVVQLTALIRHYFDIKSN--QHTPTSLLDEGANQPLTFALLSQHLKESLD 364 Query: 136 I--ALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQ 192 + + L + + V I +++ +A L ++ L + K E + S+ Sbjct: 365 LGGREKRHHLYPPIVNEVLAAIYERYNENISMKSLADDLHVNVMYLGQLFKREVGMTLSR 424 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + + R+ A +L+ ++ Q+A GY + +YF VFK G++P Y Sbjct: 425 YINQYRLAIAKDLLIASKLSVAQIAVKVGYQNQAYFYRVFKQSEGVSPKEYRQHYH 480 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 1/141 (0%) Query: 107 QQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLR 166 +Q + + LL V E +R S + + R IQ NL Sbjct: 365 EQIFSVNDCSSSEELLEKVKVILQELTREDQRTGETGSSRIVQEIKRYIQEHYAENINLN 424 Query: 167 IVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 +A + LSP L K E +Y+ + RM +A + L+ + I +VA+L GY+S Sbjct: 425 ALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHAKKYLMQFDLKIYEVAELTGYASP 484 Query: 226 SYFISVFKAFYGLTPLNYLAK 246 FI VFK G+TP Y + Sbjct: 485 KQFIRVFKKEVGVTPGEYRNQ 505 >UniRef50_D2LZT6 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZT6_BACS4 Length = 512 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 83/247 (33%), Gaps = 20/247 (8%) Query: 3 LSSSEPCVVILT--EKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 + ++ P K + V + K + ++ + + Sbjct: 278 MDTTLPVKYRFYCDVKSINVVGSEQRVKQREKEFAELIRLGEWEQIHKSIMN--LIQSYE 335 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 N D L + L + SRL + + AN +Q S E Sbjct: 336 NEGADTLQTQQRILELLWIVSRLMNEMGV--ETVSPFYSFQANDYRQLRSETNELLQQMR 393 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 L+T + LE + R I +L +A + LSP + Sbjct: 394 QLYTKHYDQLELDSIFL-------------MKRYILEHSHEDISLDKLAKKVGLSPIYMS 440 Query: 181 KKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 K K + +Y +TECR+ A Q+L +K+I ++ GY +YF VFK G++ Sbjct: 441 KLFKEKLGVNYIDFLTECRIEKAKQLLKRPDKSIKEITFDVGYHEPNYFSKVFKKMCGVS 500 Query: 240 PLNYLAK 246 P Y Sbjct: 501 PKEYRKS 507 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 10/224 (4%) Query: 23 NNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 + K A + + +++ + ++ Y + V + Sbjct: 315 EEDYPIIIEKTIFEAIQKGDVKLAVTSTH-----QFFEWMVKTYPDCMTDIKLKVIEFVL 369 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 A + + FR + E E AL R + + Sbjct: 370 WAEHIAYENGGMIYEFR----SRRDYLPTIVEIEQYDALRLWFAERIEIACRNVENKKKV 425 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 S + I+ + Q +L V+ + +SP K K E T++ +TE RM Sbjct: 426 TSISTVEKAKLYIRDNYQKDLSLEEVSRQVDISPYYFSKVFKEETGTNFIDYLTELRMSV 485 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 A Q+LL +++ ++ + GYS +YF FK G+TP Y Sbjct: 486 AKQLLLESERSMKEIGIMVGYSDPNYFSRSFKKNIGITPTEYKE 529 >UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKC7_9CLOT Length = 545 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 4/165 (2%) Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFT--VLSNFLEQSRFIALLMY 141 ++ V ++ +LA +Q + + + F +LS L ++ + Sbjct: 378 SSIVQLIQQYDLDLEQLAEEGEEQGDTFAVIPRMMKKEDFAHWLLSAALRMNQAMNRERD 437 Query: 142 ILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 V I + Q ++ + L +SP+ K E +Y+ +T+ R+ Sbjct: 438 NTMKQVIQKAKEYIMDNYQDPDLSVEKICRQLHMSPAYFSTMFKKETGQAYTAYLTQVRL 497 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 AV++L + +A GY +YF VFK +G++P + Sbjct: 498 DKAVELLNKTDDKTYVIAAKVGYQEQNYFSYVFKKRFGVSPTKFR 542 Score = 44.5 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 49/182 (26%) Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRII 155 E+ +++ +A + + +S+ R M + SS+ + + Sbjct: 335 ELIAAIKFGPREKIEEAVQAVMDK------MSDAKVHFRQCQAYMLSVSSSIVQLIQQY- 387 Query: 156 QSDIQHYWNLRIVASS-------LCLSPSLLKKKLKNENTSYSQIVTE--CRM------- 199 +L +A + P + +K E+ ++ + RM Sbjct: 388 ------DLDLEQLAEEGEEQGDTFAVIP----RMMKKED--FAHWLLSAALRMNQAMNRE 435 Query: 200 ---------RYAVQML----LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + A + + + ++ ++ + S +YF ++FK G YL + Sbjct: 436 RDNTMKQVIQKAKEYIMDNYQDPDLSVEKICRQLHMS-PAYFSTMFKKETGQAYTAYLTQ 494 Query: 247 QR 248 R Sbjct: 495 VR 496 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 9/193 (4%) Query: 65 DYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFR--LAANHSKQQPSRPCEA--ELTRA 120 +L + + + S + V R ++Q + +A E+ R Sbjct: 345 SFLEKIMDEMETERQLSAKQARSLLLELIYIAVNRGRTVGVPTEQLENLYIDAHVEVQRY 404 Query: 121 LLFTVLS----NFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 F LS + Q + C I L+ +A + LS Sbjct: 405 ATFRELSGWARSVFHQIMDRISARRPQYGEAVERACEYITLHYAEDLMLQDIADHVHLSR 464 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 + + + K E +Y++ + + RM A ++L + A L GYS+TSYFI +FK + Sbjct: 465 TYISELFKKETGMNYNEYLMQVRMEKAKELLKRQTLKVADAAALVGYSNTSYFIKLFKNY 524 Query: 236 YGLTPLNYLAKQR 248 GL+P Y+ +QR Sbjct: 525 TGLSPSEYMEQQR 537 >UniRef50_C1PAU9 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAU9_BACCO Length = 248 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 6/248 (2%) Query: 3 LSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNI 62 +S S + E + H + + K L A V ++ + T + Sbjct: 6 ISKSIIERYLSYRVEHQREYFLHPPYMMEKQLLNAVKEG-RVEAAESVLKTINTLERAKL 64 Query: 63 INDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALL 122 + + L +L C+ A T F ++ H + R E L Sbjct: 65 AEEPIRSLRNSLICICTLFTRAAIEAGVPPET--AFNISDAHILE-IERLKTQEKLFELE 121 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 +++L NF E + A S I +I L +A + L+PS L Sbjct: 122 YSMLRNFTEAVQQ-ARKQENRYSHAIHMAVAYIHENILQVITLESLAKHVYLNPSYLSHL 180 Query: 183 LKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K E S + + + R+ ++ LL N I+++A L + + SY+ S+FK + GLTP Sbjct: 181 FKKETGVSVTDYINKKRIEESIYFLLHTNITISEIALLFHFCNQSYYTSLFKKYMGLTPK 240 Query: 242 NYLAKQRQ 249 + + + Sbjct: 241 EFREQNQH 248 >UniRef50_UPI0001788A43 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788A43 Length = 516 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 + L+ E++ + L + R I++ +L+ VA + +S + Sbjct: 385 KKLVLQGFHALREEAMRHPVPESTLHERIVLQAVRYIKARFTEPISLQEVADEVAVSRNY 444 Query: 179 LKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 + K ++ V + R++ A ++L + + +VA G++ YF +FK G Sbjct: 445 FSELFKRVTGHNFIDYVIDLRLKRAKELLSTTSLRVYEVADRSGFNDVKYFSKLFKKMVG 504 Query: 238 LTPLNYLAKQRQ 249 +TP Y + R+ Sbjct: 505 MTPAEYQGQHRK 516 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 3/153 (1%) Query: 97 VFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV--RDSVCRI 154 + R A + P + E R L ++ I + S+ Sbjct: 364 LIRAATSIGYTSPVKVEETYDIRELTKNPEKVLVDSLGLIMKEYRDMVSTTSPVQRAISF 423 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNI 213 I + +L+ VA + ++P+ + K E +Y + VT+ ++R A+ +L I Sbjct: 424 IHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQNYIEFVTQAKLRKAMHLLRETPAKI 483 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +++A GY YF +FK + GLTP Y Sbjct: 484 SEIANEIGYEDIKYFNRLFKKWTGLTPSEYRTN 516 >UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobia RepID=B9XAQ1_9BACT Length = 326 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 1/149 (0%) Query: 99 RLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSD 158 RL + + + E +LL + S ++ + V R I+ + Sbjct: 175 RLRQAYFDTKVVSTRQHEAIVSLLEIFAQHISLVSNWVLVQERNAEPPVIARAKRYIEDN 234 Query: 159 IQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVA 217 L VA ++ S K K +++ V+ R+ A +LL N +++VA Sbjct: 235 QAEDLTLSEVAKAVNTSTFYFCKMFKKATGLHFTEYVSRVRIEKAKNLLLNPNLRVSEVA 294 Query: 218 QLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 G+ S ++F VFK G +P Y + Sbjct: 295 FEVGFQSLTHFNRVFKKIVGQSPTEYREQ 323 Score = 39.9 bits (92), Expect = 0.070, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 199 MRYAVQMLLMD---NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + A + + + + +++VA+ +ST YF +FK GL Y+++ R Sbjct: 224 IARAKRYIEDNQAEDLTLSEVAKAVN-TSTFYFCKMFKKATGLHFTEYVSRVR 275 >UniRef50_C5EHK1 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHK1_9FIRM Length = 510 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 22/257 (8%) Query: 2 QLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRN 61 LS EP V+ + L + + + I + Sbjct: 268 NLSVGEPVVLTEEVISRIETQKFSYPSELERKIITCINEGD------------ILPV-EG 314 Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 + ++LL+L + V ++ + +I + R A+ + S E R Sbjct: 315 YLEEFLLYLKQK---VYSYTDIREALICLTAAVLYAIRRASYGLYENISNLNILEWVRDS 371 Query: 122 LF-----TVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 LF ++ N L Q + + + V +I+ + + L +A + ++P Sbjct: 372 LFLEHYPQLILNVLMQYEQYTRNLRSGNHPIINQVLKIMDREYKSDLPLDEMAQRMNVTP 431 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 L E Y+ + R+ A ++L I +VA+ G+ YF VFK + Sbjct: 432 EYLSTLFMKELGIKYTTYRAQIRIDVAKRLLSEGKLKIYEVAEASGFPDVKYFTKVFKKY 491 Query: 236 YGLTPLNYLAKQRQKVM 252 G++P Y+ + Sbjct: 492 TGVSPGEYIRTNGKNQF 508 >UniRef50_C6CZ56 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ56_PAESJ Length = 519 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 90/240 (37%), Gaps = 13/240 (5%) Query: 12 ILTEKEVEVSVNNHATFTLPK--NYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLF 69 ++ + + LAA +L +++ L+ ++N Sbjct: 289 LIKDISGTAREDKLEPNVEENVEQMLAAI----LDYDLVSIDDRLLKLFDKN--ESVSQK 342 Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 ++ S+L ++ + E+ + A + + + E +L + F Sbjct: 343 QYAYDLIIRVTSKLHADLLQRNENLYELLKWDAQ----KAAVLFQFETIDDILSWLRRRF 398 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NT 188 E S + + + + D++ + ++ L+ VA+ +P+ L K E T Sbjct: 399 FELSELLYVKRQKQKRKLFDNIMAFVDERLEQKITLKEVAAHFDFTPNYLGTLFKEETGT 458 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +S + E RM ++L + ++A+ GY + YF FK F G+TP Y K + Sbjct: 459 LFSDWLNERRMDRVRELLADPCLKVYEIAERVGYKNIIYFNRQFKQFTGMTPGEYRKKHK 518 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 10/241 (4%) Query: 12 ILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLN 71 + +E ++ + A + + +N + D+ L+ Sbjct: 294 RVVTEEDILNTPLLHLLDYSNDLKWALRSGSMEQIDTQINSLFNLLE-----KDFTFSLD 348 Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE 131 + T + + L + + EV + ++ + + F E Sbjct: 349 QIATWDRQFELLKNNWLKEYEINNEVTFVKREDYWKEDGTFSLPKFKKEKA----DEFKE 404 Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSY 190 + ++ Y + + +Q + Q NL+ +A LS + +K K + + Sbjct: 405 LVKILSDAKYQKEKNSMQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDYDATI 464 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + +T RM A +L I +VA GY + YF VFK G+TP Y K Sbjct: 465 TDYLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQSYSTK 524 Query: 251 V 251 Sbjct: 525 S 525 >UniRef50_Q2RJ70 Transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJ70_MOOTA Length = 440 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 14/226 (6%) Query: 36 AAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR------------L 83 + A N +LS + + + I R+ I+ L + + + S+ L Sbjct: 210 SQTAGGNTEQDLSKIGNQIFMEIRRSDIDKAKKLLEQLVLQIFIQSKGQLEVIKGRSLEL 269 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 + +I + F + S + EA+ + +L+ IA Sbjct: 270 LSFLIRTSTEYGVKFGEVIHLSDLKLREIDEADTVEKAVLWLLAVGNAFIELIAERNSSE 329 Query: 144 RSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 + D V IQ + +++ +A + LSP+ L + K + S ++ + + R+ Sbjct: 330 GEGIIDRVVEYIQKNYSSESLSVKEIARASYLSPAYLGQLFKKKMGYSLTEHINKVRIEQ 389 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A +L + I VA G+ SYF VFK GL+P Y K Sbjct: 390 AKLLLRQTEQTIESVAIQTGFKERSYFCKVFKKITGLSPNEYRRKN 435 >UniRef50_C6CT83 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT83_PAESJ Length = 472 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 78/230 (33%), Gaps = 12/230 (5%) Query: 21 SVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPW 80 + ++ ++ I R+I + + + Sbjct: 253 RGVYEHRPYKENELNRRMSE--ISDAIAAVDMPAIDAAFRHIAELFREDALSTRHAFRVY 310 Query: 81 SRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM 140 + + + ++ EL + + R Sbjct: 311 NMTISFLFKLGQTEETLYSYEQLVQSFGDVFDMLGELQ--------ALVVRHCRGGEAHP 362 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 ++ + + + + + +L+ ++ ++PS + + K E ++ +++ R+ Sbjct: 363 PETKNRTFNQILQYVTDHFREELSLQGLSEQFFMNPSYISQLFKKEVGETFVGYISQLRI 422 Query: 200 RYAVQML-LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +A ++L D+ +I ++A+ GY+ YF +FK G TP Y ++++ Sbjct: 423 AHACKLLDENDDYSIHEIAEKIGYNDYFYFARLFKKMTGKTPTQYRSERK 472 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 66/180 (36%), Gaps = 4/180 (2%) Query: 68 LFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLS 127 + T P + + F A L L Sbjct: 188 RIRLEEATFAYPEPQHSAE-YELLFPCTRRFGAGATSLLFHARYLAMPLLQDE---RTLK 243 Query: 128 NFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN 187 FLE S L S+ + R++ D + + +L VA L SP L++ L+ E Sbjct: 244 QFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLREEG 303 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 TS+ ++ R A+ L D I +A+ G+S S F FK + GLTP Y A++ Sbjct: 304 TSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRAQE 363 >UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BC36_9BACI Length = 515 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 1/148 (0%) Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ 160 A K + + E T + VL+ F+++ + + + ++ Sbjct: 365 AIQKKKYEYFKAVEDAGTASEALDVLARFIKEVDELLIPADNQNGITIKKIIEYMKEHYT 424 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 L A +PS L N S+ + + + R+ A ++LL I++++ L Sbjct: 425 EPITLTEAARHFHFNPSYLSSYFSAHNEGSFIEQLNKIRIEEASKLLLEGEATISEISGL 484 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 G+S SYF VFK GL+P Y K Sbjct: 485 VGFSDHSYFCRVFKKRTGLSPSQYKRKY 512 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 12/203 (5%) Query: 59 NRNIINDYLLFLNKNLTCVKPWSRLATPVIACH---SRTPEVFRLAANHSKQQPSRPCEA 115 + + ++ L L L C R+ + + + +RL + Sbjct: 134 EHHYLTEFQLVLWHRLACWLTGKRIPIELAEFNYAKPEHSDEYRLFFYGERLFQRPQTAL 193 Query: 116 ELTRALL-------FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI--QHYWNLR 166 + L L L+++ ++ L+ +S+ + RI+Q ++ + Sbjct: 194 HFKSSYLDLPIVRTRNDLPELLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFE 253 Query: 167 IVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 VA L S L+++LK ENTS+ I + R A+ L N +I ++A G++ S Sbjct: 254 TVAHKLNTSTQTLRRRLKEENTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPS 313 Query: 227 YFISVFKAFYGLTPLNYLAKQRQ 249 F FK + G+TP +Y ++Q Q Sbjct: 314 TFHRAFKKWTGMTPGDYRSEQAQ 336 >UniRef50_A5ZM23 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZM23_9FIRM Length = 518 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 5/201 (2%) Query: 53 VLITHINRNII--NDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPS 110 + I+ I Y F + P L + C ++A + + + + Sbjct: 319 SRLDQISAETILQKLYTTFYKNHRFLQNPVKDLYYKLFLCLEDARHQQKIAGSGNVESIA 378 Query: 111 RPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVA 169 + T L L + F + + I + + +++ ++ Sbjct: 379 ETIDDCFTFPELHQTL-ITKTKEYFTKAETTSQENPTIFLIKDYISKNYMNETLSVKDIS 437 Query: 170 SSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 S + LS S + K + +Q +TE RM A Q+L IT ++ GYS +YF Sbjct: 438 SHVFLSTSYVCTFFKSETGQTLNQYITEYRMEKAKQLLKDARFKITDISSRVGYSDGNYF 497 Query: 229 ISVFKAFYGLTPLNYLAKQRQ 249 FK + GL+P Y + + Sbjct: 498 GKSFKKYSGLSPSEYREQNLK 518 >UniRef50_A6M1R0 Response regulator receiver protein n=4 Tax=Clostridium RepID=A6M1R0_CLOB8 Length = 538 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 9/210 (4%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHS 105 E ++ + + I K + P+++ ++ + ++ + A Sbjct: 329 EERSMLNAIKISSEDEISEAIDSLFKKTEDLLLPFNQYRIYLMEIMTSLLKLVQTYAFDI 388 Query: 106 KQQPSRPCEAELTRALLFTV-------LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSD 158 ++ A ++ + + + +I + + + I+ + Sbjct: 389 EEIFGENFNAYSYLESFNSIHEVKKWIIEKAIRINSYIKRERINSSMMLIEKAKQYIKEN 448 Query: 159 IQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQV 216 ++ + S L +SP+ K E TS+ +T R+ AV++L + + Sbjct: 449 YSDYDVSVEKLCSKLHVSPTYFSTMFKKETGTSFVNYLTATRLEEAVKLLNTTDDKTYMI 508 Query: 217 AQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 A+ GY +YF VFK +G++P Y Sbjct: 509 AEKVGYPEANYFSYVFKKQFGVSPSKYRKN 538 >UniRef50_B7ACV0 Sensor protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7ACV0_9BACE Length = 1324 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 111/265 (41%), Gaps = 19/265 (7%) Query: 5 SSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIN 64 S E T V V ++ + K+ LAA+ + I+ IT II+ Sbjct: 1060 SREKVKYRKTNYSVLVIDDDDELRSFLKDNLAAYYHVDVAIDGVEGRKKAITQQPDIIIS 1119 Query: 65 DYLLFLNKNLTCVKPWSRLAT----PVIACHSRTPEVFRL--AANHSKQQPSRPCEAELT 118 D ++ + +K + A P+I S+ R+ + +P E Sbjct: 1120 DVIMPNMDGIQLLKELKKNANTSHIPIILLTSQVEFSNRIEGLVQGADGYLCKPFNTEEL 1179 Query: 119 RALLFTVLSNFL-----------EQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLR 166 L+ +++N + ++ + + + ++ + + II ++ + N+ Sbjct: 1180 MVLITNLIANRVRLKGKYSGSQTQEGKIAPVELQGNDEALMERIMNIINENLSNPNLNVE 1239 Query: 167 IVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 ++ + +S + L +++K T+ S + R++ A +L + +ITQ+A G++S Sbjct: 1240 MLTQEIGISRTHLHRRMKEMTGTAPSDFIRNLRLQQATVLLENKDLSITQIAYAVGFTSQ 1299 Query: 226 SYFISVFKAFYGLTPLNYLAKQRQK 250 ++F S FK YGL+P+ Y R + Sbjct: 1300 THFSSAFKKVYGLSPMEYAQSNRNR 1324 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 62/172 (36%), Gaps = 4/172 (2%) Query: 83 LATPVIACHSRTPEVFRLAANH--SKQQPSRPCEAELTRALLFTVLSNFL-EQSRFIALL 139 L V T E+ R A K + + A + FL E +A Sbjct: 42 LGNAVFHVTIATLELHREAKELDGLKYAYFKAIDEARDAAGALQAFNAFLSEVEPLVAAR 101 Query: 140 MYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECR 198 + + + I+ L ++ +PS L N +S+ + R Sbjct: 102 VPLPSDGNMKLLLDYIEEHYGEPLTLSSLSRHFHFNPSYLSSYFSAHNDEGFSEYLNRVR 161 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + A ++L D I+++ GYS SYF VFK GL+P Y +Q K Sbjct: 162 IAKAKELLRSDGLPISEIGSRVGYSDPSYFTKVFKKQMGLSPREYRRQQLAK 213 >UniRef50_B8CYB7 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYB7_HALOH Length = 415 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 16/247 (6%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVL-ITHIN 59 + +E + K+ E ++ + + + + LN +L + Sbjct: 181 INARIAEKIHELKQGKDDEGTL---YPIEKEQELIKKVKLGDKQGARAILNDILGFVYFQ 237 Query: 60 RNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTR 119 D + L V +R A V A EV N + + Sbjct: 238 SGNKLDIIKAKAIELMVV--LARAAIEVGA----DLEVIFGLENTYFNKIDNIEDVNRLS 291 Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSL 178 +L VL F+E I + + + + I+ + H +L VA + LS + Sbjct: 292 EILVRVLDRFIEC---IFSIKNVRKKDLMYKAMNYIRDNYAHKSISLNEVADEVGLSAAY 348 Query: 179 LKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 K K E +Y++ + + R+ + ++L ++ +AQ G++ SYF VFK G Sbjct: 349 FSKLFKEELGLTYTEYLNKVRIEASKELLKQGC-SLASIAQTVGFNDQSYFSKVFKKMEG 407 Query: 238 LTPLNYL 244 L+P + Sbjct: 408 LSPGKWR 414 >UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Z3_9FIRM Length = 420 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTS-YSQIVTECRMRYA 202 + V V IQS + L VA+ SP+ L + S + + +TE R+ A Sbjct: 316 KMQVVAQVQEYIQSHLSERLTLADVAAVFNFSPNYLSQLFGKYGDSGFVEYITETRIAAA 375 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +ML + + ++A+ GY S YF VFK GL+P Y Sbjct: 376 KEMLEQGDLKVYEIAEKLGYESAFYFSKVFKKVTGLSPREYQQS 419 >UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dictyoglomus RepID=B5YFJ6_DICT6 Length = 287 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%) Query: 32 KNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 Y + S H + I R+I + L + + + + + Sbjct: 59 DGYEYKLNEGEYLFVNSGSIHSGLEMIKRSIGYAIVFDLRLLYSEEPDYCKHEYFLPLIN 118 Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV------LSNFLEQSRFIALLMYI--- 142 R L H + R E ++ + + F ++ A Sbjct: 119 KRYHIPSNLNDEHIRNDICRIIEVFKEKSYGYELYIKSLLFDIFWRVFKYYAERRNQDGR 178 Query: 143 --LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 + V I + +L ++ + +S L + K S + + + R+ Sbjct: 179 LGYKIERIKDVLNYINQNYNKNLSLDELSRQVDMSKFYLCRLFKESLRMSPVEYINKVRV 238 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A+++L+ + +++++A CG+ + SYFI VFK + TPL + + Sbjct: 239 DKAMELLINTDMSVSEIAFECGFDNISYFIKVFKKYMHTTPLKFRKQN 286 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 1/148 (0%) Query: 103 NHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY 162 K A FLE ++ I + SS + I+ Sbjct: 357 EREKYHYFATINAAKNVREATDCFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEP 416 Query: 163 WNLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 +L +A+ +PS L + + +S+ + + R+R A + L I+++ L G Sbjct: 417 LSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVG 476 Query: 222 YSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 YS SYF VFK G+ P Y + + Sbjct: 477 YSDHSYFCKVFKKRTGMPPSRYRRENAE 504 >UniRef50_Q8EPK8 Transcriptional regulator (AraC/XylS family) n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPK8_OCEIH Length = 769 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 94/267 (35%), Gaps = 18/267 (6%) Query: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNN------NVIELSTLNHVL 54 + + S P +++ K+ + L + N +L + N L Sbjct: 501 VSIGISLPYTELVSTKDAYKQGMESLKYRLKLGKESIIFYENLDRNYHFNGQLPSTNKNL 560 Query: 55 ITHI-----NRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQP 109 I + N ++ +I E+ +L K Sbjct: 561 IFDSIKVADREKVDKGLQELFNTLFDKEFNHNQYQIFIIKFLYDLIELKQLLGVDLKNLD 620 Query: 110 SRPCEAELTRALLFTVLSNFLEQS------RFIALLMYILRSSVRDSVCRIIQSDIQHYW 163 RP EL L + + + + ++ D + IIQ + Sbjct: 621 ERPLVHELENLRTSDDLQKWFKDNLIYPIIEKVEERTESKYKTISDKIIHIIQKEYDTAI 680 Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L +A+ L +P+ L + E T++S+ + + R+ A + L+ + ++ +A Y Sbjct: 681 SLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIAKKWLVDTDLSVKDIAIKLQY 740 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +++ FI F+ G+TP + ++ ++ Sbjct: 741 NNSQNFIRSFRKIEGITPGKFRSENKK 767 >UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK82_BACSK Length = 297 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 7/200 (3%) Query: 51 NHVLITHINRNIINDYLLFLNKNLTCVKPWSRLAT---PVIACHSRTPEVFRLAANHSKQ 107 +H N +++ + + W RL P+++ +P + L + ++ Sbjct: 88 DHRYYYPENAKEPWEFIYISLQGASVQDIWQRLIQKSGPIVSLPPNSPLIRSLYSIYADT 147 Query: 108 QPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI 167 + + L + L +E R +A I++ L Sbjct: 148 KADGLRDPYLAATQGYQFL---IECFRAMAEERPQNEPYHYQRALAYIEAHYHEQICLDN 204 Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 +A + +S L + K + +T+ VT+ RMR A +LL N+ I Q+A GY + Sbjct: 205 IAEEVGVSRYTLTRLFKKQLHTTPISYVTDLRMRKACSLLLHTNRTIKQIAADVGYPDDN 264 Query: 227 YFISVFKAFYGLTPLNYLAK 246 YF VF+ + G + + Sbjct: 265 YFHKVFRRYTGSSATQFRRN 284 >UniRef50_UPI000178A16B two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A16B Length = 546 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 10/237 (4%) Query: 13 LTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNK 72 L E E + L + ++A ++ + +I D L + Sbjct: 317 LESAEPEEGAMRKYDYELNEKLISALKADDEDKISEAV--EMIFASLSYTRPDGLKYGRN 374 Query: 73 NLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQ 132 C++ + ++ + PE+ + ++ ++ ++ R L+ + L+ E Sbjct: 375 --LCMQLVLAIGQLLMELGAGDPELEVMEGELTEALYAKETLKDM-RGLIESYLATVGEH 431 Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSY 190 R ++V + V I + + + + ++ LS + + K E + Sbjct: 432 IR---EKRTGRVANVIERVRGYIDQNYANGGLTVADIGKAVYLSSTYVSLLFKQETGQTV 488 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + +T+ R+ A ++L + GY+ SYF +FK G+TP Y Sbjct: 489 GEYLTKVRVDKAKELLRDPQYKFYDICYAIGYTDPSYFSKLFKKVTGVTPSAYRGSH 545 >UniRef50_C6LBG3 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridiales RepID=C6LBG3_9FIRM Length = 259 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 10/243 (4%) Query: 17 EVEVSVNNHATFTLPKNYLA----AFACNNNVIELSTLNHVLITHINRNIINDYLLFLNK 72 +V +V H N++ N +V E + + +LI + +++ + Sbjct: 17 DVTRNVMGHRHKHYELNFMTRGKTKMRLNESVFEYESYDFILIPPMVTHLLYESKYATFD 76 Query: 73 NLTCVKPWSR---LATPVIACHSRTPEVFRLAANHSKQQ-PSRPCEAELTRALLFTVLSN 128 N +I H EV L + K S +AEL L VL + Sbjct: 77 NYVIWFGMKDQHPFTDKIIKLHDYDGEVQFLCSQIYKTYMASGMEKAELINLYLKAVLYH 136 Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSD-IQHYWNLRIVASSLCLSPSLLKKKLKN-E 186 + + + V + I + + +++ VA +SP L +K K Sbjct: 137 MRDGVILNTRRQLDDTHDLTEQVLKYISENIFRQRLSVKAVADRFSISPEHLSRKFKKDT 196 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + Q + E R+ A ++L N I +++ Y+ YF FK G +P Y K Sbjct: 197 GENLIQYMNELRIAEAKRLLESQNLTIKEISAGLFYTDPFYFSKSFKKLTGCSPSEYRKK 256 Query: 247 QRQ 249 + Sbjct: 257 NIK 259 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 83/264 (31%), Gaps = 20/264 (7%) Query: 3 LSSSEPCVVILTEKEVEVSV----NNHATFTLPKNYL---AAFACNNNVIELSTLNHVLI 55 + SEP +TE E F P +L F + + LN Sbjct: 258 VVVSEPFSA-ITELEQSYKASLLKMMDYAFYFPDKHLLLFHEFPESGQAADPFNLNSFTE 316 Query: 56 THINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAA----------NHS 105 + + L+ ++ + S + Sbjct: 317 SFKRERFDTAFDYLLDHLEVFKTNYTTDVFEFKSFLSNVIFNITVLLGNMNYGTQQLETK 376 Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRF-IALLMYILRSSVRDSVCRIIQSDIQHYWN 164 K + E +L+ F+ +++ IA ++ + I N Sbjct: 377 KYYYFKAIEESRNANTAAELLTAFIGEAKLCIAEKAEQSGNANMKRLLDYIHEHYAESLN 436 Query: 165 LRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L +A +PS L + N + + R+ A ++L +I++++ + GYS Sbjct: 437 LTEMAKHFHFNPSYLSSYFSTHHNEGFVDYLHRVRLEKASELLRAGEASISEISGMVGYS 496 Query: 224 STSYFISVFKAFYGLTPLNYLAKQ 247 SYF VFK GL+P Y + Sbjct: 497 DHSYFCKVFKKHTGLSPSRYRQQN 520 >UniRef50_C2L0L9 Response regulator receiver protein n=2 Tax=Lachnospiraceae RepID=C2L0L9_9FIRM Length = 541 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 16/227 (7%) Query: 40 CNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATP-VIACHSRTPEVF 98 + + ++ + I R+I L+K + SRL +P + H ++ Sbjct: 312 KEEHKVNKEIIDEERLLDIYRSIRMSSEEELDKCIDLYIENSRLDSPSLQEYHFFLMDLV 371 Query: 99 RLAANHS------------KQQPSRPCEAELTRALLFTVLSNFLEQSRFI-ALLMYILRS 145 K++ + + A L + ++ + I + Sbjct: 372 TNMHKFLLANQVDTGLIFPKEEDVYQKVQQFSLAELSQWMKEICKKMQIIIQEMRSDKTK 431 Query: 146 SVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAV 203 S + S + ++ L +S + K E S+ +T+ RM A+ Sbjct: 432 SFVKKAVEHVHSHYMDKDLTVEALSQELHVSAAYFSTIFKRETGKSFINYLTDYRMEKAL 491 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 ++L+ + + +A+ GYS +YF FK +G++P Y + + K Sbjct: 492 RLLMEEEEKTYIIAEAVGYSDPNYFSYAFKKKFGMSPSKYKSNSKGK 538 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 11/209 (5%) Query: 44 VIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAAN 103 + E + ++ + N + + +R+ Sbjct: 302 LFEFENHLFNRLFEDAEQVLKNIFSKFKSNFVSSIETKNICFQIYYIC------YRVLKK 355 Query: 104 HSKQQPSRPCEAELTRA----LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDI 159 PS A + A +L ++ + ++ ++ + ++ + I ++ Sbjct: 356 REAIPPSSELLARIHSAPDIFILENTVNELFQYTKNQFNGSNGTQNRIIENTIKFIHQNL 415 Query: 160 QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218 +L ++A L +S S L + K + S ++ V + R+ A + L N ++A Sbjct: 416 ATALSLEVIAEHLHISASHLSRTFKKYCDESLTEYVNKTRIEKAKEYLKDSNMLTYEIAN 475 Query: 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 GY+ +YF S+FK + G +P Y K Sbjct: 476 QVGYNDATYFSSIFKKYTGFSPSEYRQKY 504 >UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGW7_9FIRM Length = 504 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%) Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD 149 C P+ +R + + + LT L +E +R+ Sbjct: 349 CSEVNPQAYRRMQ---ESEIEKTAATALTIKTLEDCFRREIEIILSEKDKKEDIRNYTIR 405 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 I+ + +L ++A L ++P L E +++ + R+ +A ++L Sbjct: 406 RAINFIREHYRENISLELLAEHLEITPEYLSTLFNKEVGINFTTFLKRFRISHAKRLLKG 465 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +K I ++++ GY YF VFK G++P +Y Sbjct: 466 SSKKIYEISEEVGYHDPKYFNRVFKEEVGVSPGDYRQMS 504 >UniRef50_UPI0001788C2F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C2F Length = 532 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 +L + + +++ +S R I+ + +L +A P+ Sbjct: 393 EQAERLLMQWAQDFVDNLTESGDRDATLIESAKRYIEENYMQELSLTSLAEQYNYHPTYF 452 Query: 180 KKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 + K S+ Q VTE RM++AV++L + +A+L G+SS YF S FK + Sbjct: 453 SEMFKEGAGVSFIQYVTEVRMKHAVRLLQETRLTVWDIAELTGFSSPGYFSSKFKKMFNQ 512 Query: 239 TPLNYLAKQRQKV 251 +P + Q +K+ Sbjct: 513 SPSEFRLSQSEKI 525 >UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZVU5_9FIRM Length = 509 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 97/246 (39%), Gaps = 15/246 (6%) Query: 13 LTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELST---LNHVLITHINRNIINDYLLF 69 L E ++ F P+ ++ F+ ++V++LS + ++ I+ +I Sbjct: 257 LPEILEQLEQQMEEKFYHPEKHV--FSNEDDVLKLSVGEVQDSQIMQMISEDITRKDTDQ 314 Query: 70 LNKNLTCVKPWSRLATPVIACH--SRTPEVFRLAANHSKQQPSRPCEAELTRAL------ 121 L K+ C+K T A + V + ++ R E E+ R Sbjct: 315 LRKHFACLKEKYHDNTKYSAMYIKFVFSNVIQELFQENQFSGERRLEHEIERLYNCRNIM 374 Query: 122 -LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 + V + +++ + +V I + NL ++A + LS L Sbjct: 375 EILEVTEDNIKEYEAFLDRSMSSSRNEVAAVKNYIYQHYEEDLNLEMLAEKVYLSSGYLS 434 Query: 181 KKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 K E + ++ + RM A ++L N + QV++ G+++ SYF F+ +YG + Sbjct: 435 FIFKKETGMNLNRYIRVFRMEKAKELLCSTNMKVAQVSERVGFANVSYFCRSFREYYGSS 494 Query: 240 PLNYLA 245 P +Y Sbjct: 495 PESYRK 500 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 10/251 (3%) Query: 9 CVVILTEKEVEVSVNNHA--TFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDY 66 ++L + E V + + +EL IT ++ NI Sbjct: 2 LKILLVDDEYLVREAFKVILKKMKETVVIGEASSGKKAMELFCKTQPDITFLDINIPGTD 61 Query: 67 LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVL 126 + L + + + + + + + R + + +P E AL+ + Sbjct: 62 VFDLIEFMKGIYHKNSIILLSGYDLFGSEILQRALEMGADEILMKPSHQEDVIALIRRYM 121 Query: 127 SNFLEQSRF-------IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 + +++ I I V S I+ + Q+ L VA + +SP L Sbjct: 122 TFNEKENDKFDSMLDGITAKNSIQDGKVIQSALNYIEENYQNGITLEEVAEHVHISPFYL 181 Query: 180 KKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGL 238 K K E ++ VTE +M+ A ++L + + +A Y +YF VFK G+ Sbjct: 182 SKLFKKELKMNFVSYVTEKKMQKAKELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGI 241 Query: 239 TPLNYLAKQRQ 249 TP Y + ++ Sbjct: 242 TPSEYRKRSKK 252 >UniRef50_P32677 Uncharacterized HTH-type transcriptional regulator yijO n=33 Tax=Gammaproteobacteria RepID=YIJO_ECOLI Length = 283 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 52/135 (38%), Gaps = 1/135 (0%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 T L+ L + + ++ +++ I VA + +SP+ Sbjct: 141 TARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPN 200 Query: 178 LLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 L + +++ + R+ +A +L + + +VA CG+ ++YF +F+ Sbjct: 201 YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNT 260 Query: 237 GLTPLNYLAKQRQKV 251 +P Y + ++ Sbjct: 261 ERSPSEYRRQYHSQL 275 >UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae RepID=C3SIM7_ECOLX Length = 283 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 52/135 (38%), Gaps = 1/135 (0%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 T L+ L + + ++ +++ I VA + +SP+ Sbjct: 141 TARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPN 200 Query: 178 LLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 L + +++ + R+ +A +L + + +VA CG+ ++YF +F+ Sbjct: 201 YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNT 260 Query: 237 GLTPLNYLAKQRQKV 251 +P Y + ++ Sbjct: 261 ERSPSEYRRQYHSQL 275 >UniRef50_D0ZE29 Hypothetical transcriptional regulator AraC family n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZE29_EDWTE Length = 275 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 12/220 (5%) Query: 39 ACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPW------SRLATPVIACHS 92 C + V+ L + IT + L + + + W R T + Sbjct: 58 RCGD-VLYLPSGEQRQITGDEEATLLSLLFAKQRIVLTLWQWDGAQLQRRQQTQIARRGP 116 Query: 93 RTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVC 152 RT A N QP+ A LT + L + S+ L L R ++ +++ Sbjct: 117 RTGTFLLQALNEQAMQPAAQATARLTVSALLSHCSDLL----AGHLRTAPHRQALLNAIR 172 Query: 153 RIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNK 211 I + VA ++P+ L + + ++ + R+ A +L Sbjct: 173 DYIDDHYMDALSRDAVARRFHITPNYLSQLFQRADGGGFNHYLNHVRLEQAKTLLKEYEM 232 Query: 212 NITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKV 251 I +A CGY ++YF +F+ TP Y + + Sbjct: 233 TIKAIAHACGYDDSNYFCRLFRQRTERTPSEYRRQYHSQS 272 >UniRef50_C0C1J0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1J0_9CLOT Length = 544 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 9/231 (3%) Query: 15 EKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNL 74 E + + KN L + + + + + L + N + Sbjct: 311 EGTKQKRLEMRLLNEFDKNILE----GYIKSQNEAGIRQFVDEMLSRVKKEGLTYTNVKI 366 Query: 75 TCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSR 134 C+ + A + T ++ +Q E + L T+ SR Sbjct: 367 MCLDIYMLAAKLLAEKGKDTETAVKMLERLDRQAVKNTALEEFRKYLEQTLCVI----SR 422 Query: 135 FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQI 193 ++ + + +L +A ++PS L + K E N + Sbjct: 423 QFDDRKKSSGKTLITDILAYVDEHYSKDVSLGTIAGKFFINPSYLSQLFKKEMNMKFIDY 482 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 +T+ R++ A+ +L + + +VA+ GY T YF +F G TP Y Sbjct: 483 ITDVRIKKALVLLETTSLTVNEVAEAVGYKDTRYFREIFVKHMGKTPSQYR 533 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 103/253 (40%), Gaps = 11/253 (4%) Query: 7 EPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDY 66 E ++ + V N + + + + + + + + + + + + ++ Sbjct: 20 ESAMIAMLTGAKGNIVINGQSIEIESD-VTLIIPKYSQVSCNIVCNTVKQPLELHTLSMS 78 Query: 67 LLFLNKNLTCVKPWSRLATPVIACHSRT--------PEVFRLAANHS--KQQPSRPCEAE 116 L +K + P+ + + F L K+Q + Sbjct: 79 AEELQAVFLLLKTLMKSGAPLTSHQPIYHISPPETVRDNFSLLKQCLPLKKQSASQEALL 138 Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 + ++L F +++ + E + L + ++ +I + Q W+L VA +L +P Sbjct: 139 MKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTP 198 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 S L++ L E S+ Q++ + RM A+ L N ++ Q++ CG+ S +YF VFK Y Sbjct: 199 STLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKY 258 Query: 237 GLTPLNYLAKQRQ 249 +TP + + RQ Sbjct: 259 NMTPSQFRLQSRQ 271 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 6/219 (2%) Query: 29 TLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVI 88 K + N + LI+ N + N T + + + V Sbjct: 323 KYQKQLIENIKSGNELGVKENTK--LISDYLTNNNINIHYMRNFYYTTLSSINNIRISVS 380 Query: 89 ACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 + + + + +AE +LL V + + + + Sbjct: 381 SVDTEKKYSEGEDIASLIKLIEKTDKAEELNSLLEEV---AVRIASKVNSFNNKSIKLIL 437 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 IQ L VA ++ +S + + K E S+ + + R+ A ++L Sbjct: 438 RKAIDYIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKSFVDYLNDVRIDKAKELLK 497 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +VA+ G S YF +FK + G+TP Y Sbjct: 498 DVRYKTYEVAEKVGISDPHYFSKLFKKYSGMTPSEYRDS 536 >UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY2_9CLOT Length = 252 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 1/147 (0%) Query: 104 HSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW 163 K P E +++AL + S++ EQ V V I+ I H Sbjct: 104 LLKPIPYEELEFVISQALEHSKKSHYQEQVLGSLYPADSQEPGVVHRVKEIVSQFISHDL 163 Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +A + L+P L K E + S+ + R+ A +L + ++ +A GY Sbjct: 164 TREQIAELVHLAPDYLSHLFKKETGVTLSEYIASQRLTMAKYLLAQTSLPVSSIADKVGY 223 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQ 249 S SYF VFK YG+TP+ Y +++ Sbjct: 224 SYVSYFNRVFKKAYGMTPVEYRRSEKK 250 >UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC74_9FIRM Length = 240 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 8/230 (3%) Query: 22 VNNHATFTLPKNYLAAFACNN---NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVK 78 + F + + VI + + I+ + + Sbjct: 5 IIVEDEFRIRNGLSTLINKLDMGCKVIGEAENGFEGLKMISDMEPEVVITDIKMPKMDGL 64 Query: 79 PWSRLATPVIACHSRTP----EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSR 134 R A + A F A + + + + +L+ E+ Sbjct: 65 SMIRQAKEMGASCDFVILSGYAEFEYAQQGIQLGVMDYLLKPASVSDVKELLNKLNEEKE 124 Query: 135 FIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQI 193 L S + + +I+ L +A ++P L K ++S Sbjct: 125 ITQGLDRENCSDIVREMINVIEESYGMKLQLDAIAEKFHMTPEYLGNLFAKETGITFSNY 184 Query: 194 VTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + + RM A ++L + I +VA GY YF VFK + G++ + Sbjct: 185 LRQVRMEKAKELLTGTDMKIYEVACAVGYPDQKYFSKVFKEYAGVSAKQF 234 >UniRef50_C9B1F2 Transcriptional regulator n=4 Tax=Enterococcus RepID=C9B1F2_ENTCA Length = 278 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 85/239 (35%), Gaps = 16/239 (6%) Query: 16 KEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLT 75 E+ V + +T+ K + ++ ++H + ++ N Sbjct: 35 LEISVLLEGESTYYFEKEPAKKIRAGSVMLFNPGVDHCELQPKGTRSHQLHIGLKN---I 91 Query: 76 CVKPWSRLATPVIA--------CHSRTPEVFRLAANHSKQQPS-RPCEAELTRALLFTVL 126 ++ + R P H + ++L S+++ + + + +L +L Sbjct: 92 SLEGFKRNFFPNKHPLLELGKYHHQVLEKAWQLVRESSEERDEFQLMQKAVLMEMLVYIL 151 Query: 127 SNFLEQSRFIALLMYILRSSVRDSV---CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL 183 E + + + + V +++ + L +A LSP+ L K Sbjct: 152 RGLNEDHINVLPYLSKSQRRQQQIVNYTVYYLENHYKEEITLEKLAQDQFLSPTYLSKIF 211 Query: 184 KN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K S + E R++ A ML +N I +VA GY +F FK YG++P Sbjct: 212 KEATGVSPINYLIEIRLKRAKDMLKNENLTIKEVASAVGYQDAYHFSKSFKKLYGVSPS 270 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 SV + I + + +AS + L+P L + K E S S + + R+R Sbjct: 422 EHSPSVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRLR 481 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 A ++L + ++ VA GY++ S+F +FK + G+ PL Y Q + Sbjct: 482 IAAELLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQESR 531 >UniRef50_UPI0001C36936 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36936 Length = 527 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 17/208 (8%) Query: 44 VIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAAN 103 +S +++++ + + I +N L + + + T + Sbjct: 328 EFLVSHIDNLIADGSSIDTIKAL--AINSILVVEEYLKQNTS-----CRETGNGIQELIC 380 Query: 104 HSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW 163 SR ++ R L + + RS V D I+ Sbjct: 381 RIISMKSRHRIQDIAREYLAST---------APLIESAKSRSPVIDRALVYIREHYSENI 431 Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 L+ +A + L P L + K + ++ + +T R+ A L N I + Q+ GY Sbjct: 432 TLQSLAEDIYLHPVYLSRLFKEKVGQTFLEYLTHYRIEMAKDYLRNPNLRIYDIGQMVGY 491 Query: 223 SSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + YF VFK G TP + + K Sbjct: 492 ETPQYFSRVFKELTGTTPKGFREELAGK 519 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 2/176 (1%) Query: 71 NKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFL 130 + + + +I + + + + ++ + + LF L Sbjct: 357 KEQYASEEVRDWVLKLLIDMRLKLHAMLFASQTLTAEKLHKEIVYFDSLWGLFEWFHTQL 416 Query: 131 E-QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NT 188 + + + + + + ++ +L VA+ L ++PS + K E Sbjct: 417 QSYIAAREEALPVSKRREVSEARKYVSMNLGKRISLEEVAAHLHMNPSYFSRFFKKETGL 476 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++ + VT+ ++ A ++L N ++++ ++ GY + SYFI FKA GLTP Y Sbjct: 477 TFIEYVTDQKIERAKELLDQTNYYVSEICEMLGYDNQSYFIKTFKAQTGLTPTEYR 532 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 4/155 (2%) Query: 97 VFRLAANHSKQQPS-RPCEAELTRALLFTVLSNFLEQSRFIALLMYILR--SSVRDSVCR 153 V L + S + L +L + + ++ + + + V Sbjct: 121 VVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNYEENVIKEIDVDNRIIQEVAT 180 Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKN 212 I +L VA LS S L KK K + + + R++ A +LL NK+ Sbjct: 181 YIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKS 240 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 IT +A CG++ ++YF F+ G++P Y + Sbjct: 241 ITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNE 275 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 28 FTLPKNYLAAFACNN--NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLAT 85 F + L + + T +HV + ++ L + + Sbjct: 56 FHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKDYLLSSPYVIALLDGLFMNNNYVI 115 Query: 86 PVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVL---SNFLEQSRFIALLMYI 142 P ++ + EV H + S + L +ALL +L S ++E +R L Sbjct: 116 PFLSAEQQYVEVLLDKMIHEIEHQSTGFQVAL-QALLMDLLVYTSRYIESNRHDVLAPPS 174 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRY 201 + + I ++ Q L VA + +S L + K ++ + + R+R Sbjct: 175 QVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYLSRTFKQATGFTFVEYINNIRIRE 234 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 A ++L N + +++ G+ S S+F VFK +PLNY Sbjct: 235 AQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRFSPLNYRR 278 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 S E E + T++ +++EQ R+ + +C + ++ Q ++L VA Sbjct: 131 SAESEPESPGMIYLTLILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVA 190 Query: 170 SSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 + LSP L + + S + R+ A ++L + NI+ VA+ G++S ++F Sbjct: 191 ARFYLSPYYLSRLFRRVTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHF 250 Query: 229 ISVFKAFYGLTPLNYLAKQR 248 VF+ G PL Y R Sbjct: 251 RRVFRETMGTGPLQYRKSHR 270 >UniRef50_B0CCY1 Transcriptional regulator, AraC family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CCY1_ACAM1 Length = 282 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 8/209 (3%) Query: 46 ELSTLNHVLITHINRNIINDYLLFL-----NKNLTCVKPWSRLATPVIACHSRTPEVFRL 100 E+ L IT + DY L + L + + P +F++ Sbjct: 73 EIWLLPAQQITQSQWDGHLDYFRLLIRPQWLRELANDVTGVQQYALDLQLQVLDPLLFQI 132 Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFI--ALLMYILRSSVRDSVCRIIQSD 158 A + + L L L L + L + I Sbjct: 133 ALALNTELTGSTQPDFLYVESLSHTLGRHLLRRYASCSPDLQWQYSKGEFQDAIAYIHDH 192 Query: 159 IQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVA 217 +Q L +A + +SP+ ++ K S + VT+CR++ A ++L + I++VA Sbjct: 193 LQDPIRLADLARVVHMSPNYFAEQFKQTMGISPYRYVTQCRIQTAQRLLRHRHLAISEVA 252 Query: 218 QLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 G S+ S F +F+ + G++P Y A Sbjct: 253 HQVGISNPSQFSRLFRQWTGISPRTYRAN 281 >UniRef50_B9MLQ2 Two component transcriptional regulator, AraC family n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ2_ANATD Length = 519 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 75/202 (37%), Gaps = 1/202 (0%) Query: 47 LSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSK 106 + ++N+ + N I + ++ +I T + + Sbjct: 312 IHSINNPTQIPMIENYITQLCKLYIELFGENNLKYKVIKLIIMLLLETGIATSDESIDVE 371 Query: 107 QQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLR 166 + S+ + + + + S+ I+ + + I + L Sbjct: 372 KLISQILNSSYEQIVEIFKKAVLSLFSKAKTKHEQIINNDSINKAIEFINQNYSEEITLS 431 Query: 167 IVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST 225 ++S+ +P K K S+ +T+ R++ A Q+L +K+I +++ G+S Sbjct: 432 QISSTFNFNPYYFSKLFKKYTGVSFKTYLTKLRIQKACQLLKNTSKSIKEISFAVGFSDP 491 Query: 226 SYFISVFKAFYGLTPLNYLAKQ 247 +YFI FK F G+TP + + Sbjct: 492 NYFIKAFKKFTGMTPSAFRSSS 513 Score = 41.5 bits (96), Expect = 0.025, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 14/239 (5%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACN-NNVIELSTLNHVLITHINRNIINDYLLFLNK 72 ++KE EV K Y + +++ L + ++ N+ Sbjct: 236 SQKEAEVLQEKIQEILKQKPYWNSIKIGFSDLYYLEEGYENAFWEAYYSTLDLEFPEENE 295 Query: 73 NLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQ 132 + + + P + N+ Q E L + V+ + Sbjct: 296 ENEHLLLLTENLEAKLIHSINNPTQIPMIENYITQLCKLYIELFGENNLKYKVIKLIIML 355 Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQ 192 + V + +I+ S + + + LS T + Q Sbjct: 356 LLETGIATSDESIDVEKLISQILNSSYEQ---IVEIFKKAVLS------LFSKAKTKHEQ 406 Query: 193 IVTECRMRYAVQMLLMD---NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 I+ + A++ + + ++Q++ + + YF +FK + G++ YL K R Sbjct: 407 IINNDSINKAIEFINQNYSEEITLSQISSTFNF-NPYYFSKLFKKYTGVSFKTYLTKLR 464 >UniRef50_C6D490 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D490_PAESJ Length = 527 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 6/213 (2%) Query: 40 CNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFR 99 + +L L +II D + +L I S FR Sbjct: 311 PEEMITKLEAALENLDEKEGISIIRDIFRKMEARSGMSPTDLQLQCLNILLSSVRKMSFR 370 Query: 100 LAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS-----SVRDSVCRI 154 + ++R L ++ Q ++ + + V Sbjct: 371 QLQQNDFLGRHILSLEGMSRFQTLESLEEWMAQVIRKIIVFKQEHNIPKKKDIIAEVKEY 430 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNI 213 + L +++ +SP L + K +Y +T R+ A ++L + + Sbjct: 431 VAEHYSEPITLADLSARFFISPYYLSQFFKQKTGDTYVNFLTRIRINKAKELLERTDLKV 490 Query: 214 TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +V Q+ GYS T +F +F+ G P +Y + Sbjct: 491 YEVCQMVGYSDTQHFARMFEKLTGYKPRDYRKR 523 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 9/228 (3%) Query: 24 NHATFTLPKNYLAAFACNNNVIELSTLN---HVLITHINRNIINDYLLFLNKNLTCVKPW 80 N + L + L + + +R+ + +L + + Sbjct: 56 NQDIYYLEPGDMTIIPPLEVHKALYEPSWEAERFGIYFSRDTVTSFLSLCGREA-FGHIF 114 Query: 81 SRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL--LFTVLSNFLEQSRFIAL 138 S+ + + E ++Q C+ +L L + VL E R Sbjct: 115 SQPKRTIPSEFRPKIEELLAQMQDEEKQGDSYCQIQLCSLLHQILVVLGRCQEARREGHA 174 Query: 139 LMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTEC 197 L + V R + Q L VA+ +SP+ KK K+ + + + Sbjct: 175 LEEAEEAMV--RAARYMNQHYQEGVTLGQVAAFANMSPTYFSKKFKSSTGLCFKEYLNYI 232 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 R++ A ML + ++T VA CG+S +YF VF+ G++P Y Sbjct: 233 RVQKASDMLRNTDLSVTGVAMACGFSDGNYFGDVFRRLTGVSPREYRK 280 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAV 203 + + + ++ L+ ++ L LSP+ L + K + + VTE RM A Sbjct: 151 NLLVQKAIQYVEVHYGGRITLKDMSEELHLSPNYLCELFKRHTGKNLMEYVTEYRMMKAR 210 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 L ++ VA++ GY YF S FK YG+TPL Y K+ Sbjct: 211 NYLNHVEYKVSDVAEMVGYKEAKYFSSTFKKMYGMTPLEYRNKR 254 >UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD4_9CLOT Length = 532 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 6/184 (3%) Query: 68 LFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLS 127 +N+ + + RL + RT VF + + P L L Sbjct: 346 EAMNRAVEGQYRYYRLYGLLEEMLERTGLVFSDIMKDYEIPDAEPYIRRLENCTTLNQLK 405 Query: 128 NFLEQ-----SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 + S + I L +A + L+P+ L Sbjct: 406 LVWADYVSVSCELCQRQKDGMGSRPVRMIKEYIGEHYSENITLNDIADIVFLNPAYLSAM 465 Query: 183 LKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K E + +Q + + R+ A +ML + I ++A + GY +F +F G+ P Sbjct: 466 FKKETGQTLTQYLIDVRIDKAKEMLRNPERTIGEIACMVGYQDERHFSKLFSKMTGVKPT 525 Query: 242 NYLA 245 Y Sbjct: 526 EYRR 529 >UniRef50_C5EU48 Response regulator receiver protein n=4 Tax=Clostridiales RepID=C5EU48_9FIRM Length = 546 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 67/169 (39%), Gaps = 4/169 (2%) Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFT--VLSNFLEQSRFIALLMY 141 ++ + ++ ++ + + + ++ + F+ +LS L ++ + Sbjct: 378 SSIIQRIQQHDLDMAQILEEGEEHEDTFALIPKMQKKEDFSQWLLSVALRMNQVMNQERD 437 Query: 142 ILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 V I + Q ++ + L +SP+ K E +Y +TE R+ Sbjct: 438 NTMKQVIQEAKEYIMDNYQDPDLSVEKICRHLHMSPAYFSTMFKKETGQAYIAYLTEVRL 497 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 AV++L + +A GY +YF VFK +G++P + +R Sbjct: 498 NKAVELLNKTDDKTYVIASKVGYQEQNYFSYVFKKRFGISPTKFRGAKR 546 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTS 189 + ++ S + + IQ L VA L +SP L + +K E S Sbjct: 280 EKCKEQMVEESRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGIS 339 Query: 190 YSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + ++T+ RM A ++LL I ++A+ GY + YF + FK G++P Y + Sbjct: 340 FIHLLTKIRMEKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRRTR 397 >UniRef50_UPI0001C35C03 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C03 Length = 301 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 6/171 (3%) Query: 83 LATPVIACHSRTPEVFRLAANHSKQ-----QPSRPCEAELTRALLFTVLSNFLEQSRFIA 137 L VI + F + + + + Q S +AE L ++ + FL+ + + Sbjct: 127 LKQRVIFALFQIMRNFEVLISGNFKKEANLQISSLQKAETLTLLKRSLYAFFLDLGKELN 186 Query: 138 LLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTE 196 + +++ NL VA +PS KN +++S+ + Sbjct: 187 CQKEGNGRDIMTDCGEYLENHYMDEINLESVAEKYHFNPSYFSTLFKNTYKSTFSEYLIR 246 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 RM A ++LL + +A L GY +YF+ FK +Y +TP Y Sbjct: 247 IRMEKARELLLTTESRVRDIAVLTGYRDANYFVRAFKRYYEMTPEEYRKMS 297 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 1/145 (0%) Query: 102 ANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQH 161 ++ + L+ L L N L + S+ + R ++ + Sbjct: 392 SSGLPLYVLLDEQGRLSLELCRRELLNGLTAFAALTGAGGNKEHSIMRDIARYMEQNYNR 451 Query: 162 YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLC 220 L+ ++ LS + ++ K E + + R+ A +L N I Q+A++ Sbjct: 452 EVTLQDISERFYLSREYISRRFKQEMGENVFDYLGRIRVEKAKLLLQNPNLKIAQIAEMV 511 Query: 221 GYSSTSYFISVFKAFYGLTPLNYLA 245 GY YF VFK F G +P Y Sbjct: 512 GYDDDKYFSKVFKKFEGQSPNQYRK 536 >UniRef50_A4XMI3 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMI3_CALS8 Length = 251 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 80/239 (33%), Gaps = 2/239 (0%) Query: 9 CVVILTEKEVEVSVNNHATFT-LPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYL 67 C +++ E E + T A N L L I I +I + Sbjct: 2 CRMLIVEDEEILLERLTKTIEWHEIGIEKVIAAQNGEDALKILEKEEIDIILTDIRMPLV 61 Query: 68 LFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLS 127 L K +++ + K +P E + V+ Sbjct: 62 DGLCLAEITGKKAKPPKIILMSGFKEFEYAHKAVKLGVKDYILKPFTKEEILEAVKKVVD 121 Query: 128 NFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNE 186 L+ V SV + L VA+ + L P L + L K Sbjct: 122 EIRNYRENEDTLIENCDGDVIKSVFDYLNKHYAQQITLNDVANYVHLHPVYLGRLLRKKV 181 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ +I+TE R++ A+ +L + +VA+ G+S YF VFK YG+TP + Sbjct: 182 GKTFKEILTEVRLKKAISLLKNSSLKNYEVAEAVGFSDAQYFSQVFKKIYGITPNEWKK 240 >UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW54_9CLOT Length = 517 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 5/153 (3%) Query: 95 PEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRI 154 PE L+ + + L L +L L S +I+ L + +SV + Sbjct: 368 PEDLFLSVSDTITAVLNESNPALMARKLREIL---LSASVYISRLEKLRPNSVVQKARKY 424 Query: 155 IQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKN 212 I+ + + L VA + ++ S E S+ +T+ R+ A+ +L + Sbjct: 425 IEENYWNPDLRLDDVAGYVYINASYFSSVFSKEMGISFGDYLTKVRIEKAMDLLKNTHMK 484 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 I ++A L GY + S+F FK + G P ++ Sbjct: 485 IYEIADLVGYQNPSWFNVAFKRYTGQKPGDFRK 517 Score = 39.5 bits (91), Expect = 0.092, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 12/85 (14%) Query: 175 SPSLLKKKLKNENTSYSQI---VTECR----MRYAVQMLL----MDNKNITQVAQLCGYS 223 +P+L+ +KL+ S S + + R ++ A + + + + VA Y Sbjct: 387 NPALMARKLREILLSASVYISRLEKLRPNSVVQKARKYIEENYWNPDLRLDDVAGYV-YI 445 Query: 224 STSYFISVFKAFYGLTPLNYLAKQR 248 + SYF SVF G++ +YL K R Sbjct: 446 NASYFSSVFSKEMGISFGDYLTKVR 470 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 18 VEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCV 77 P N + + + + I + + + L + V Sbjct: 164 EWEEQARFLDMDFPDNMILILVSVQSSYDKKIDKGTVTEEIYKITLEKIIRELMEPYHTV 223 Query: 78 KPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAE---LTRALLFTVLSNFLEQSR 134 +S V + PE F+ + + Q + R F L + + R Sbjct: 224 SVFSSKYEDVAIVMEKLPENFQEFSADLQLQTEEKVGGKCFITARECTFETLPDISREMR 283 Query: 135 FIALLMYILRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQ 192 M R + + I ++ Q +LR VA ++ + S + + +K E S+ Sbjct: 284 REVQKMQECRP-IVQDARKYIYANYQDRNLDLRQVAHAIGCNSSYISRIMKQELGISFKD 342 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +T R+ AV+++ +I Q+A+ GYS+ YF + FK G++P + Q Sbjct: 343 FLTRLRISQAVRLMEDRELSINQIAEKVGYSNQHYFSAAFKNCQGMSPSEFRKNMLQ 399 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 3/157 (1%) Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 ++ P +F+ + + E ++++ +LS E + + Sbjct: 120 NAEMPALFQQLVDAHRSDTLAARLRE--KSVMLDILSRVFEHQQPQIHADKMEDMGRLHK 177 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 V + I++ + L +A +L L P+ K K + + ++ RM A ML Sbjct: 178 VQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITPQKYLSLKRMEQAKLMLRTT 237 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + +I ++A G+ S +YF F+ G +P Y Sbjct: 238 SLSIKEIADATGFESANYFSKTFRKEVGYSPSEYRNN 274 >UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clostridium RepID=A6LST7_CLOB8 Length = 517 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 6/226 (2%) Query: 23 NNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 N + + K F+ + ++++ +L ++ I L + Sbjct: 296 NFKSPSPIEKFNFKRFSESISIMQFQNAFKMLTIYVTNAIDQRSLTEFELKALIQNSFYN 355 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 + T + + ++ L + +L A ++L+ F + I Sbjct: 356 VITSLEYLNFDLDKLNYLKQECFHDIDNTKYSEDLLVAY-NSLLNRF---KQIIDTYENK 411 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRY 201 + S + + + + I L V+ + S L + N +++ + + R++ Sbjct: 412 INSHIINKIIQYIHDHYDEQLTLTNVSKLFNFNYSYLSAYFSSHNEEGFNEFLNKIRIQK 471 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 A L + I+ ++ + GYS SYF VFK F G+TP + K+ Sbjct: 472 ACDFLKQ-DIPISDISGMVGYSDQSYFCKVFKKFTGITPSTFRKKR 516 >UniRef50_B6FJW1 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJW1_9CLOT Length = 509 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 73/189 (38%), Gaps = 1/189 (0%) Query: 63 INDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALL 122 + Y+ +L + L ++ + E + + + +QQ + Sbjct: 321 LKKYVFYLKERQVEEYRLKNLTKNLLYNYLMEIERYEVESEQLRQQYFNWIDNTHYIEEF 380 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 V + +E+ + + + + I+ Q L +A + + L Sbjct: 381 VQVFQDIIEKLEALRVYQLEAEDVKISKMKKYIKEHYQEQLELSEIAENFNFNYHYLSSY 440 Query: 183 L-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K+ +S + + R+ A ++L + +I+Q++ GYS SYF VFK G TP Sbjct: 441 FNKHTKEGFSGYLNKIRIEKACELLRKGDMSISQISAAIGYSDHSYFCRVFKKMIGNTPS 500 Query: 242 NYLAKQRQK 250 +Y + +++ Sbjct: 501 SYKRQMKKE 509 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 3/152 (1%) Query: 97 VFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQ 156 + + + + + A T + T + ++ E + S + +I Sbjct: 327 LVKFDSKQAYLEAVNQMAAARTMHEIRTCIDSYYETCKGRPA--SAGYSPLIQKALHVID 384 Query: 157 SDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 + +L VA L ++P L + E + S+ +T RM A +L N I Sbjct: 385 KSYKEPISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMERAKSLLQDTNMKINM 444 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + GY YF ++FK G+TP Y A Sbjct: 445 ICVQVGYQDAKYFCTLFKKITGVTPNQYRASS 476 >UniRef50_C6CWF4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF4_PAESJ Length = 451 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE 186 S + + I +V D + I +L A + L+P K K + Sbjct: 328 SYVISALQRIREQREQQTINVMDKAKQYIGLHFTEELSLEETAEHVHLNPHYFSKVFKQQ 387 Query: 187 -NTSYSQIVTECRMRYAVQMLLMDN-KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 ++ +T R+ A Q++ + + +V GY +YF VFK GLTP Y Sbjct: 388 VGATFIDYLTGLRIEKAKQLISSADELALKEVCFEVGYKDPNYFSRVFKRVTGLTPTEYR 447 Query: 245 AKQR 248 ++ + Sbjct: 448 SQAK 451 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 + V+ ++ AL + + I ++ +L+ VA + L+PS Sbjct: 126 EQKERERVMKQLIDDKLINALDRHPQTREPIREAIQFIDQRLKDDISLKDVAEHVHLNPS 185 Query: 178 LLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 K + ++S+ +T RM+ A ++L+ + + ++A+ CGY + YFI +FK Sbjct: 186 YFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTAKYFIHLFKEME 245 Query: 237 GLTPLNYLAKQRQK 250 G TP +Y Q+ K Sbjct: 246 GKTPSSYRKSQKGK 259 >UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J9_9FIRM Length = 351 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 16/222 (7%) Query: 32 KNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 + + + + L+ ++ + I ++N V A Sbjct: 144 NEISSILPQEDAAQQEILRKYELLPEMDYDRIVQVAEYIN---DMVHYIVDRAVKSHTRD 200 Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 + A S ++ + L + E ++ + SSV Sbjct: 201 ETYKWLMSANAEQSSEEI--QIQELLPQE----------EHRPQQTGVLPVNPSSVVYPA 248 Query: 152 CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDN 210 I+ +Q ++ +A LSPS + K S+ ++ R++ A ++LL Sbjct: 249 VVYIRDHLQQEITMKEMADLCHLSPSYFSRTFNKETGESFVNYISSRRIQLAKELLLETG 308 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 K+I+Q+A+ GY + S+F +VFK G+ P Y + +++K Sbjct: 309 KSISQIAEEVGYDNISHFTAVFKRTEGIPPSVYRSSKKRKKF 350 >UniRef50_C6CY25 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CY25_PAESJ Length = 535 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 12/242 (4%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLF 69 I + V + + ++++ EL L + + D + Sbjct: 294 KAISYSELAGVREADGPPIKVSQSHIHTLLYGLQSKELHDYMGSLFDQLGKRQDPDLVQL 353 Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF 129 ++ L + A + + KQ + + E L F Sbjct: 354 ISLELIMILT---------AIWPDVSHDQQHVVHLKKQYFDQLSKLETIEQSRRWFLQAF 404 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NT 188 E + + R+S+ + IQ Q +L+ ++ + LS + K E Sbjct: 405 AELLEHMIRIYNSDRNSII-KATQFIQQHYQQEISLQSISHFVHLSKNYFANLFKKEVGE 463 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 S+ + VT R+ A +L V Q+ G YF VFK G TP Y + + Sbjct: 464 SFLEYVTRVRIEKAKALLA-GEMKAVDVGQMVGIQDPKYFSKVFKKITGATPSEYRSLVK 522 Query: 249 QK 250 + Sbjct: 523 EN 524 >UniRef50_C6D127 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D127_PAESJ Length = 534 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 + SV + I+ +++ + VA+ + L+P+ L + K E + + E +M Sbjct: 424 LESDSVVQKSVQYIKENVEEDISREDVAAHVGLNPAYLSRLFKKETGQNLIDYLIETKMA 483 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 A Q+L ++ +AQ GYS+ S+F +FK YG+ P Y Sbjct: 484 RARQLLDTTGMTVSAIAQQVGYSNFSHFTKMFKKQYGINPQEYRN 528 >UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7M7_9BACL Length = 531 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 20/237 (8%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKN 73 +E L L + N LS L+ +L + Sbjct: 307 PSREPGADREAKYPKHLEAVLLDSIRTLNRERLLSALDET-------------KQYLEEQ 353 Query: 74 LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLS----NF 129 + R+ + R E L + S + + ++ T + + +L + Sbjct: 354 AFSKEAAERMIVELTVVMFRQYEQMHLLSEWSLEGLLQELQSLGTLSEMIGLLKANFGRW 413 Query: 130 LEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENT 188 + +SR + +V I S+ ++ VA LS S K Sbjct: 414 ISESR--ESQIKDNVQNVIAKTQEYILSNYHKDLSMEEVAERADLSISHFCLLFKQVTGY 471 Query: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 ++ + +TECR+ A +L + QVA + GY YF VFK G+TP Y Sbjct: 472 TFLEYLTECRIEKAKYILKNSQVKVYQVAPMVGYQDPRYFTQVFKKVTGMTPTEYRE 528 >UniRef50_A8U8W0 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U8W0_9LACT Length = 404 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 8/222 (3%) Query: 23 NNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 ++ + K L A ++ + L + I + L + R Sbjct: 187 EIEKSYQVEKKILNAVEKGDHEKAIELL-EFYKIDLTYRIPGNPLRTYKNLGFSLNTSLR 245 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 + + + + + E E R + +E + + Sbjct: 246 ITVERVGVDPIYIHLLSNKIAIQIENLTTISELENIRTFMV------IEYCQLVDAERSK 299 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRY 201 S V IQ +L +++ L ++ + L K+ K + + + + R+ + Sbjct: 300 RYSPVIKEAVTYIQLRYFEKISLSTISTKLNINATYLSKRFKVETGQTITHFIQDARINH 359 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + Q++ ++ +IT +A G+ +++YF +VFK G+TP +Y Sbjct: 360 SKQLIKDNDLSITDIALKVGFENSNYFCTVFKKRTGVTPRHY 401 >UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1P7P5_BACCO Length = 292 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 5/176 (2%) Query: 80 WSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAE--LTRALLFTVLSNFLE--QSRF 135 + + ++ H + S ++ S E L+ L +VL+ + + Sbjct: 116 FLQQQPLDLSSHRDFAAAYSKLPVFSLEKLSASAEVLGTLSEYYLSSVLNEEAKPAKEST 175 Query: 136 IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIV 194 + + + IQ I L VA + LSP K K E ++ V Sbjct: 176 AQVKKHASSKKEIKQALQYIQKHIHQPVTLEEVAGHVYLSPYYFSKLFKKETGETFVSFV 235 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +M A ML D+ ++ +A G+ SYF VFK +Y TP +Y A R+K Sbjct: 236 NRQKMNLAKDMLANDDLPVSYIAHSLGFREISYFSKVFKRYYQTTPTSYRAMSRKK 291 >UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L9U6_TOLAT Length = 284 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 5/192 (2%) Query: 54 LITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPC 113 L R + L+ ++ + + P+ A + Q S Sbjct: 94 LSLLFGRRQLGLSLVSWSQQQQNFIDVQKHSYPLSAKSPVH----SMLQALIDLQASELQ 149 Query: 114 EAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLC 173 + L TVL+ E Y SV +C +Q + + VA Sbjct: 150 TPRSLQLQLMTVLTFTQELLHQPQPEKYQRAQSVFQRICIYVQENFHKAISRETVARRFN 209 Query: 174 LSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVF 232 +SP+ L + + + +++ + R+ A ML ++ ++A CG+ T+YF VF Sbjct: 210 ISPNHLSRLFRQQGHMNFADYMVYVRIDRAKFMLRRYPMHLEEIAHRCGFRDTNYFCRVF 269 Query: 233 KAFYGLTPLNYL 244 K G TP Y Sbjct: 270 KKKTGRTPTEYR 281 >UniRef50_C0CYV6 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CYV6_9CLOT Length = 410 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 65/224 (29%), Gaps = 8/224 (3%) Query: 24 NHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRL 83 + + L A AC +++ + I N + L + R Sbjct: 190 IEERYEVEDQMLEAVACGDHMKASRYHSLFKTYRITPRTENALINR-KNMLIILNTLCRK 248 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL 143 A H + Q + + + + Sbjct: 249 AVQKGHVHPYYIDELSTQFAIRINQSRSMGDLDAIDNEMIHKYCLLVRNH------SMKN 302 Query: 144 RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYA 202 S + L A ++ S L K ++ + + R+R+A Sbjct: 303 YSRLIQRCITYTDFHYAEPLTLSFFADMCHVTKSYLSNLFRKETGSTLTDYIHAVRLRHA 362 Query: 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + +L I VA CGYS +YFI +FK G++P Y + Sbjct: 363 LVLLNSTTIPIQVVAASCGYSDLNYFIKLFKRENGISPKQYRVQ 406 >UniRef50_C5EQZ1 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQZ1_9FIRM Length = 534 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 12/221 (5%) Query: 26 ATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLAT 85 +N + + L YL + ++ L Sbjct: 324 YPMETERNMIRHIGELDMAAVREDLREF----------EAYLKKQVYHYADIREAM-LCM 372 Query: 86 PVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS 145 V + + + S + ++ T++ N L + + ++ + Sbjct: 373 TVAILYEIRKTSYGIYEEISHLNVLEWVKTRISTDAYATMMLNILGEFKRYKDNVHHCNN 432 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 V + + II+ + + + +A ++P L E Y+ T+ ++ +A + Sbjct: 433 PVINEILNIIEKEYKENILVEEMARRFNITPEYLSTLFVRELGIKYTAYCTQVKIEHAKK 492 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +L N I +VA+ GY YF VFK + G +P Y+ Sbjct: 493 LLRNSNMKIYEVAEQSGYMDVKYFCKVFKKYTGKSPKEYIQ 533 >UniRef50_A9KJM4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KJM4_CLOPH Length = 517 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 82/223 (36%), Gaps = 15/223 (6%) Query: 29 TLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVI 88 + + +L N + + L+ ++ + D L + + +R Sbjct: 309 EMEEKFLLNIRDGNKEALNNLV--TLLDLLSNYSMLDKKNKLLELIVMASNKARRDGGSE 366 Query: 89 ACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 + ++ E+ R + ++ + + + + + + Sbjct: 367 SEYTNYIELLRELDSLAEGEINSWA------------FRSVNYVLKSVRDNQDENSFAAI 414 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 V R + + L VA L +SP + K + +Y +T R++ A + L+ Sbjct: 415 RKVLRYVDTHYDEDITLEEVAGILNISPQYFSRIFKEKMGVTYVDYLTNIRIKKAQEWLI 474 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 +KNI ++ + GY +YF VFK G+TP ++ + ++ Sbjct: 475 YSDKNIQEICYMVGYKDPNYFSRVFKKTVGVTPKQFVENKGKR 517 >UniRef50_UPI0001C35BEA two-component response regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35BEA Length = 535 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 83/209 (39%), Gaps = 5/209 (2%) Query: 41 NNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRL 100 N+ +L + I HI + ++ + L ++ + + + T +R+ Sbjct: 329 GNSQFDLRQNFYSFIHHITHIEDSSP-GYVCECLDRLEEFFAVQSAKDGLEPDT--AYRI 385 Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ 160 A + S+ +LT L +L + + A ++ S V D ++ + Sbjct: 386 AFSVSESMTVCSSLEDLTDMLYARLLDYWKLKKEGTAPAAHMASSPV-DQAIAYMEQNYY 444 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 +L +++ + ++ S K + + R+ + Q+LL N+ + ++++ Sbjct: 445 LDLDLSMISDLISMNSSYFSSLFKKKTGMNLINYLQNVRIEKSKQLLLNSNQKLYEISEA 504 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 G + YF +FK + G+TP + + Sbjct: 505 VGIPNVKYFCKLFKDYTGVTPSEFRKHEH 533 >UniRef50_UPI0001789951 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789951 Length = 539 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 81/243 (33%), Gaps = 19/243 (7%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIND---Y 66 VV +T+ E S ++A E+ LI I I+ Y Sbjct: 302 VVHITDLEKRGSGPLLDGIETETALVSAIRAG-TGSEVKACIRRLINEIGSASISIELCY 360 Query: 67 LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVL 126 + L L ++ + + +++ + + + L Sbjct: 361 VRVLRVMLAVLQTLMEIGSNGNEL------------IGKEKRLLSDLYSFRSLDEIERWL 408 Query: 127 SNFLEQS-RFIALLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLK 184 + EQ+ R +A + S IQ +++ V S + +S S K Sbjct: 409 NEVCEQALRDVAKTRKDIARSQMLEAVDFIQRHYEDEELSIKTVCSRIFMSTSYFSALFK 468 Query: 185 N-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 + ++ + VTE RM A ++L ++A GY YF +FK G TP Y Sbjct: 469 SHTGKTFVEYVTEVRMEKAKELLKHSLLKTYEIAAKTGYQDPQYFSVLFKKHTGDTPTEY 528 Query: 244 LAK 246 K Sbjct: 529 RNK 531 >UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR09_9CLOT Length = 568 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 5/161 (3%) Query: 91 HSRTPEVFRLAANHSKQQPSRPCEA---ELTRALLFTVLSN-FLEQSRFIALLMYILRSS 146 + P +L + + EL RA L + L+ +R ++ +++ S Sbjct: 398 NFLYPLSIQLKEEGIPPLAALTLDEAFLELDRAEDSAALRDVLLKTTRSLSAVLHGTSSD 457 Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQM 205 + I I +L +A LSPS + K + + ++ C+M YA Q+ Sbjct: 458 FVERTKEYIFEHIGQDLSLEDIAEHFYLSPSHFSRTFKAQAGETLIRFISRCKMEYAAQL 517 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 L N I V + GY S +F +FKA+ G+ P Y + Sbjct: 518 LSNTNLKIYDVCEQVGYKSLRHFNKLFKAYTGMQPSGYRQR 558 >UniRef50_A9U743 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U743_PHYPA Length = 244 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 10/199 (5%) Query: 54 LITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPC 113 L + L + R+ + + R + +R ++ Sbjct: 47 LNIPAVLECVRQCFERLKEQRAGTGTIVRVCSQLEDMACREVQEYREIRG---KEARARL 103 Query: 114 EAELTRALLFTVLSN-FLEQSRFIALLMYILRSSV----RDSVCRIIQSDIQHYWNLRIV 168 E +L + F+ + + F+E R +Y LRS + + V R I + L + Sbjct: 104 ETQLRACMSFSDMEDCFVEAFRSALEKVYGLRSEMGGKAVEIVKRWIAEHYSEHAELNTL 163 Query: 169 ASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL-MDNKNITQVAQLCGYSSTS 226 A+ + L+PS L K K E + ++ +T+ R++ A ++L N + Q+ GY+ + Sbjct: 164 AAMVYLTPSYLSKLFKQETGLTLTEYITDVRLKNAKRLLRTEPNMKVHQIGAEVGYADPA 223 Query: 227 YFISVFKAFYGLTPLNYLA 245 YF +FK G+TP Y Sbjct: 224 YFNKLFKKVVGVTPNEYKK 242 >UniRef50_C4Z6Z4 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z6Z4_EUBE2 Length = 403 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 13/227 (5%) Query: 25 HATFTLPKNYLAAFACNN--NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 + + A + ++ +L+ LN I ++D + + + R Sbjct: 187 EQRYNDESLLMEYVAHGDFESIDKLAHLNSSGIKPR----LSDSIRDRKNFMIILNTLCR 242 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 A H + + + + E + ++ Sbjct: 243 KAAQSAYVHPIHLDEISRKFAIRIESCTTIAQLETLENEITRKYCLLVQ------SYSLR 296 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 S ++ I ++ +L +++ L+ S + K E ++ + V R+ + Sbjct: 297 KYSKPVQNIINYISFNLTDDLSLNTISAEFALNSSYVSSLFKRETGSTLTNFVNNKRIEH 356 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 A+ +L I +A CG + +YF +FK +TP Y + Sbjct: 357 AIYLLNTTKLPIQDIAVQCGITDVNYFTKLFKKIKNMTPSQYREMIQ 403 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 10/225 (4%) Query: 35 LAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRT 94 + + V+ + H + N + L F + H Sbjct: 53 IYHLVPGDFVLIPQSAMHRFVYDCNSTVKRYNLFFTMDFAASLFHSDTKDILEHLFHYPV 112 Query: 95 PEVFRLAAN---------HSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS 145 + L + + C + A + +LS + I L Sbjct: 113 LHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYISLILSLLVRNRDHIQLQDLDSAE 172 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQ 204 + + R I + Q +L +VA + +SP+ KK K + + +T+ R+ A + Sbjct: 173 NAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQITGVGFKEYLTKTRLYEATE 232 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +L + N+T++A CG++ +YF F+ +GL+PL Y +Q+ Sbjct: 233 LLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQYRKRQKN 277 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 2/225 (0%) Query: 28 FTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPV 87 P + + E L+ + + + L ++ + + V Sbjct: 76 IIKPNQPHKFIVKSESGCEFIVLSFKFVNRFDGQYSDVSLENFLDFVSGKETGPFITLKV 135 Query: 88 IACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQS-RFIALLMYILRSS 146 + + R+ L LF ++S L+ Sbjct: 136 SQKNDIIVLLNRILKERENPDIGSEFLNYLLVMELFVLISRALKMEWENSIKNKSPKIKE 195 Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 + + I ++ + +L+ +A + LS S + K E S + + R+ A ++ Sbjct: 196 LIQASVNYINNNYERDISLKDIARYVFLSTSYFTRAFKEEMGISPINYLLKIRVERAKEL 255 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 L + I+ +A G+S+ F +FK + LTPL Y + K Sbjct: 256 LKDTDNRISDIALSVGFSNQQRFNDIFKKYVKLTPLQYRKNVQVK 300 >UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0J9_9BACE Length = 425 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 10/223 (4%) Query: 29 TLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVI 88 L N L+ L+ + + N + +R++T Sbjct: 207 DLEDRLAREIQGRNREAALACLDDLFEELVLVEGGN-FDSIKLHFFELYISLARMSTERG 265 Query: 89 ACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 A + N + + A+ +R L+ + + ++ Sbjct: 266 ASLRNIFGLDFKFINSLNELNTLDSLAQWSRELVAHFVDDIFADLPQVSSA--------T 317 Query: 149 DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 I + LR +AS+L L+ S L K + E TS++ + R+ ++ +++ Sbjct: 318 TRAVSYINAHYMDKLTLRDLASALFLNESSLSKLFRQELGTSFTDYLNRIRIEHSTELMR 377 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 ++++ +++ L G+ SYF +FK G TP Y ++ + Sbjct: 378 NTDRSLLEISGLVGFDDQSYFTKIFKKVTGTTPRQYKSQLNNE 420 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 94/252 (37%), Gaps = 14/252 (5%) Query: 9 CVVILTEKEVEVSVNNHATFT--LPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDY 66 C +++ +EV + A F + +++ ++ N+ + + + Sbjct: 80 CQLVIHAPNLEVMLKRGARFYGLFEDALNIELSRDDSSAFIT-FNNTFNRFDANHFLEES 138 Query: 67 LLFLNK-----NLTCVKPWS--RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEA---E 116 LL + + + P R + P S +F + + A E Sbjct: 139 LLVIWHRTACWMVDQLIPLKSARFSYPAPPHQSAYKAIFNTELHFDQAVTQLEFPAKFLE 198 Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYW-NLRIVASSLCLS 175 L A L FL +S L S + +I DI+ VA L LS Sbjct: 199 LPVAQSERTLVEFLRESPADLLARPAKDESYAGRIRALIGYDIECDLPAFESVAEQLGLS 258 Query: 176 PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 P L+++LK E TSY ++ R A+ L +I ++AQ G++ S F FK + Sbjct: 259 PQTLRRRLKEEGTSYQELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKW 318 Query: 236 YGLTPLNYLAKQ 247 GLTP +Y Sbjct: 319 VGLTPSDYRQTH 330 >UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and AraC-type DNA-binding domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK9_ANOFW Length = 428 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 V + V +Q + + L VA + L+P K K E ++ VT R+ A Q+ Sbjct: 323 VIEQVEMFLQENYCYDVTLEEVAKYVHLTPYYFSKLFKKETGQTFIDYVTHLRIEKAKQL 382 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + + + + GY +YF VFK +TP Y Sbjct: 383 MRDEGLTVKEACYRVGYKDPNYFSRVFKKVTNMTPTEYRQ 422 >UniRef50_A1HMP5 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP5_9FIRM Length = 251 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 15/218 (6%) Query: 34 YLAAFACNN--NVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 + F N I L+T N+ + +N N+ L + ++ R+ VI Sbjct: 26 HWRLFTAGNGSAAINLTTTNYFELAFLNINLPAQSDLIV---AGKLRQSGRVKDIVIV-- 80 Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 + F +A K + ++ L T+LS +L + S + V Sbjct: 81 -TAHQDFAIAHAAIKIGAADLLIKPISADELNTILSRYL-----PPKNTKPVYSPLITKV 134 Query: 152 CRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM-D 209 I+++ +L +A+++ ++PS L ++ K E S+SQ + R++ A +L+ Sbjct: 135 LTILENRYAERLSLTNIAATVHVNPSYLSRRFKAEVGYSFSQYLINLRLKIAKDLLISRP 194 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + +I Q+A+ G++S Y ++F GLTP Y Sbjct: 195 DLSIAQIAEQTGFASQQYLSALFHRNTGLTPREYRKNN 232 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 4/173 (2%) Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFT---VLSNFLEQSRFIAL 138 R P S +F ++ + + L FL+ S L Sbjct: 222 RFNYPEPEHSSEYRHLFYCPLQFNQPDTRIYFHKRYLQLPVIQDEPSLKEFLKTSPADLL 281 Query: 139 LMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTEC 197 ++ + ++ D+ + +AS + +SP L+++LK ENTS+ +I Sbjct: 282 ARPDDSNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRLKEENTSFQEIKDNM 341 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 R A+ L +I ++A G++ S F FK + G+TP +Y ++ Sbjct: 342 RRDAAIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYRESVLRE 394 >UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0ET05_9FIRM Length = 355 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 9/197 (4%) Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 +I+ +Y+ L V S+ V R E + + + + + ++ Sbjct: 153 DILREYIDQLYLEEHDVNIISKRLQEVAKAVVRISEELGI--TDTNELVVQMEKLKIKYL 210 Query: 121 LLFTVLSNFLEQSRFIALLMYILR------SSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 L + E + + +L + +V I+ +++ +L VA+ + + Sbjct: 211 LYNNKHDAYNEIIKMVDILFDKMNIKGKLSEGGMKAVIDYIERNLKKGISLEDVANHVNI 270 Query: 175 SPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 S L K K E ++ VT+ +M A +ML+ + + +A Y+ +YF FK Sbjct: 271 STYYLSKIFKKEMGVNFITYVTDRKMDLAKEMLVNTDIPVLNIALDLAYNEANYFSKAFK 330 Query: 234 AFYGLTPLNYLAKQRQK 250 GLTP Y K R + Sbjct: 331 KKTGLTPSEYREKYRNR 347 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 5/151 (3%) Query: 102 ANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV---RDSVCRIIQSD 158 S + + + L + + + I+ Sbjct: 351 QGKSAESLLQTIDQLPGSMELKSWFKAACQDFETRLDRWKQQANPYVNSIQQAIDYIEEH 410 Query: 159 I-QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQV 216 +++ VA ++ L+PS L K E +++ V + +++ A +L + I+++ Sbjct: 411 YLDSDLSIKQVAENIHLNPSYLSTLFKKETGETFTGYVNKLKLQKAQVLLRNTDMKISEI 470 Query: 217 AQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 Q G+ ++YF SVFK + ++P + Sbjct: 471 CQTVGFEDSTYFSSVFKKHFQISPSEFRQNH 501 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 2/169 (1%) Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMY 141 +L ++ R + ++ + ++ L +++ + +E +R Sbjct: 366 KLMHYLLIHLLREMRELHMLPREQEEGLWKRLREPMSLKELLSIIVSLIEHARSSLSAKK 425 Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 + S IQ+ + + + +A L +S S KN ++ + +T+ RM Sbjct: 426 STE-LLMMSAQNYIQNHLGRDFGIEDIADYLGISSSYFCLLFKNHFGETFVEYLTKQRME 484 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A +L ++I Q+ GY YF VF+ + G+TP +Y K+ Sbjct: 485 MAKCLLRTSERSIAQIGSSIGYQERRYFTKVFQKYTGMTPSDYRQKESN 533 Score = 44.9 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS-- 175 + L+ +L + L + R + +L + + +L+ + S + +S Sbjct: 364 SEKLMHYLLIHLLREMRELHMLPREQEEGLWKRLR--------EPMSLKELLSII-VSLI 414 Query: 176 ---PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLM---DNKNITQVAQLCGYSSTSYFI 229 S L K TE M A + + I +A G SS SYF Sbjct: 415 EHARSSLSA--KKS--------TELLMMSAQNYIQNHLGRDFGIEDIADYLGISS-SYFC 463 Query: 230 SVFKAFYGLTPLNYLAKQRQK 250 +FK +G T + YL KQR + Sbjct: 464 LLFKNHFGETFVEYLTKQRME 484 >UniRef50_C3QA40 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=C3QA40_9BACE Length = 288 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 8/217 (3%) Query: 37 AFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPE 96 N+V+ + + +L I + L K S ++A + + Sbjct: 77 EIVEGNHVVTIQFSDKLLNFPILEK--RLFSPIKQLLLDSQKGISFSENTMLAMKEKILQ 134 Query: 97 VFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQ 156 + R+ H+ + +L+ A ++SN + I +S VC I+ Sbjct: 135 LTRMQGFHTVLEFLS-ILYDLSTADRHILVSNLYDTKDTI----RTSKSRRIAKVCDYIE 189 Query: 157 SDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQ 215 + + L VA+ + +S S K N ++ + R+ A QML + + + Sbjct: 190 KNFEEPIKLGDVAALVNMSESAFSHFFRKKTNCTFIDYINNLRVARACQMLTETSHTVAE 249 Query: 216 VAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 + CG+++ S FI +FK G TP Y +Q ++ Sbjct: 250 ICYSCGFNNLSNFIRIFKKKKGNTPSEYRTILQQMLI 286 >UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus RepID=C6JCU7_9FIRM Length = 282 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 13/245 (5%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITH--INRNIINDYLLFLN 71 E E+ + T TL + A N+ + S + H I H + + I+ D FL Sbjct: 39 VEYEIIRILEGSLTVTLDEKSFTAV-KNDVIFVHSGILHSGIPHDCVYQCIVFDMNTFLK 97 Query: 72 KNLTCVKPWSRL----ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA-LLFTVL 126 N C + ++ P++ + + ELT + Sbjct: 98 NNPVCGEYIQKILHQETMLFPHFSDEHPQILNCISVLFDAMYEKDTGYELTVFGQFYHFF 157 Query: 127 SNFLEQSRFIALLMYILRSSVR----DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 FI R R V I+ + + L+ +++S+ +SP + Sbjct: 158 GLIFSNHYFIENPTRTRRDYKRILQLKQVLEFIEKNYANPITLQELSASVSMSPKYFCRF 217 Query: 183 LKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 + + + R+ A L + +IT++A G++ SYFI FK + G+TP Sbjct: 218 FSEMTHQTPVDYLNRQRIEEACLQLAATDDSITEIAYRNGFNDLSYFIRTFKKYKGMTPG 277 Query: 242 NYLAK 246 Y + Sbjct: 278 KYKRR 282 >UniRef50_O31522 HTH-type transcriptional regulator yesS n=2 Tax=Bacillus subtilis RepID=YESS_BACSU Length = 761 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 11/225 (4%) Query: 26 ATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLAT 85 F L K + ++ + + I+ ++ + ++ +SR+ Sbjct: 545 YPFELEKQIVQTIRLERKQEAKELIDGCMKELSEKAAIDRHV-----HSALIQLFSRIQE 599 Query: 86 PVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS 145 ++ E+F+ + S E A L V+ + + Sbjct: 600 DILHSGLNPSELFQ--HRNPFLDISELREPNEAAAWLMDVV--VTPYLSKLEGRKNRQQK 655 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQ 204 + + V +I +L A +L ++ L K K ++ VT+ R+ A + Sbjct: 656 QLAERVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKE 715 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +L+ NK I V++ GY +YF +FK G+ P + ++ Sbjct: 716 LLVNTNKKIHDVSEEVGYR-HNYFNRIFKKQVGMPPGVFRQMYQE 759 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 12/240 (5%) Query: 11 VILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTL--NHVLITHINRNIIND-YL 67 ++ + F LP A +N ++E + L+ ++ ND ++ Sbjct: 60 IVSVDLTTYSVSAGDIIFVLPGQLHAISQKDNEIMEYENILFKSSLLKSSGYDLCNDKFI 119 Query: 68 LFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELT-RALLFTVL 126 L + P TP P V RP +L+ +A LF +L Sbjct: 120 QPLFSGSLNICPVINNQTPYY------PPVITAINEIDHLCDLRPYAYQLSIKAHLFQIL 173 Query: 127 SNFLEQSRFIALLMYILRS-SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 + + +S ++ I ++ Q + +A+ S S K K Sbjct: 174 YTLVSNCGQNKIKPINQKSLKKIKTILSYIANNFQENIAIEDIANYCFYSKSYFMKFFKE 233 Query: 186 E-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 S+ Q + + R+ A ++L NI +A G+++ SYF FK YG++P Y Sbjct: 234 TMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFATGFNNISYFNRCFKKKYGVSPRKYR 293 >UniRef50_A9U7P8 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7P8_PHYPA Length = 194 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 1/140 (0%) Query: 109 PSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIV 168 P RA ++ L + V + + + NL ++ Sbjct: 53 PLEETRRFYCRAQYERWFADLLHPVLQGIRRKTEEHDPITSFVTEYMCTHLDEDINLDMM 112 Query: 169 ASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 A L ++ L K ++S + + R+R A ++L + I VA GY + + Sbjct: 113 ADKLNITSGYLSTYFKEKTGVNFSDYLNDLRIRTAKELLQNLDLRIQDVAARVGYRNVNS 172 Query: 228 FISVFKAFYGLTPLNYLAKQ 247 FI +FK G+TP Y K Sbjct: 173 FIRMFKRHAGITPGEYRRKY 192 >UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIX4_BACSK Length = 765 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 8/142 (5%) Query: 110 SRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 + L+ +LS F + + + + I L A Sbjct: 631 QEQMKNWFVSRLIDPLLSAF-------KQVSESQFQHLSEKMIDYIHQHYHQAVTLEQCA 683 Query: 170 SSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 + L + + L K ++S+ + + R++ A + L ++ + +A+ GY+++ F Sbjct: 684 ADLHYNANYLSSVFKEGTAMTFSEYLAQYRLKKAKEWLAKTSEPVKTIAEKLGYNNSQNF 743 Query: 229 ISVFKAFYGLTPLNYLAKQRQK 250 I FK G+TP Y +++ K Sbjct: 744 IRSFKKMTGMTPGQYRQQKQLK 765 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 13/228 (5%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 N + + T II D + + ++ + P I Sbjct: 24 ELQITEIVEAENGQQAVQIIE----TSSPEIIITDMKMPVMGGGKLLEWLNETECPSIRI 79 Query: 91 ----HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSS 146 + + + + S +P + +L +L +S Q ++ + Sbjct: 80 VLTGFDQYEYMRKAVQHGSFDYLLKPIDPDLLHEVLTKAVSAVQLQQPKGEVVAEDYKDQ 139 Query: 147 VR----DSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRY 201 V ++ L+ +A + +S + +K K + + + + + RM+ Sbjct: 140 TITITMRKVEEYLKEYYHEDIKLQDIADTFYISREYISRKFKEHFHLTITDYLVDLRMKK 199 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A+++L N + ++A+ GY YF VFK F G+TP +Y K + Sbjct: 200 AMELLDRTNLKVYEIAEKVGYVDDKYFRKVFKKFAGVTPNDYRQKDKN 247 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 140 MYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNEN-TSYSQIVTECR 198 + V D V + ++ + +L V+ L +SP+ L + K ++ +TE R Sbjct: 154 ESDRNALVMDHVRKYMEDNYMADLSLDSVSEILHISPAYLSAQFKKYQKMNFLDCLTELR 213 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + A ++L ++ +VA + GY SYF FK G+TP Y + + Sbjct: 214 INAAKELLADPFRSAAEVASMVGYEDASYFARAFKKRTGMTPTQYRKEAAK 264 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLA 84 K+ + V H + + L + + LA Sbjct: 46 GERIYFIKDRSYRVRAGDLVFVDRNAVHKTLDSGRPDHDRLVLYINPELFADLAVPPELA 105 Query: 85 T----------PVIACHSRTPEVFRLAANH--SKQQPSRPCEAELTRALLFTVLSNFLEQ 132 P++ S E ++ + + L R +L F + Sbjct: 106 EGLKEPFGWDVPILRLPSPASEAVERMVGDMVNEMIHPQAGSSWLLRHRTVELL-LFAYR 164 Query: 133 SRFIALLMYILRSSV----RDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-N 187 SR + ++ V +V R + + + L VA + +SP L + K Sbjct: 165 SRHLGMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAFRISPHYLSRLFKQTTG 224 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++S + R++ A ++L + +IT +A G+S+ S+F +FK L+P Y + Sbjct: 225 FTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKMFKRTVQLSPRAYRQQY 284 Query: 248 RQKV 251 R + Sbjct: 285 RMRS 288 >UniRef50_Q65KY8 Probable transcriptional regulator n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KY8_BACLD Length = 760 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 13/242 (5%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLF 69 V+ L+ +E ++ F L K + A E+ + I ++ + Sbjct: 528 VIDLSRREDMPPAESYYPFALEKEVVRALRLEERD-EVERRIRLFIRELSEKGKTE---- 582 Query: 70 LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFT-VLSN 128 + ++ ++++ + E+F Q+ S E E + +S Sbjct: 583 IRIQPGMMQLFAKIQEEIFHSGLHPYELFSRKNLL--QELSELREPERAVGWMMERCISP 640 Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-EN 187 +L++ + + + + V +I D + +L A + L K K Sbjct: 641 YLKE---MEGRKNRQQKRLVEQVLEMIHQDYMNDISLESCADRAGTNSYTLSKAFKQVTG 697 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 ++ VT R+ A ++LL NK I V++ GY SYF +FK G+ P Y Sbjct: 698 INFIDYVTRLRIEKAKELLLETNKKIHDVSEEVGYR-HSYFNRIFKKQVGIPPSRYRQIH 756 Query: 248 RQ 249 ++ Sbjct: 757 QE 758 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 3/155 (1%) Query: 98 FRLAANHSKQQPSRPCEAELTRALLFTV--LSNFLEQSRFIALLMYILRSSVRDSVCRII 155 + L K+ A L + + F++ S+ + + Sbjct: 102 YLLKPLDKKKLVEAVELAFRKEEELNRIERMERFVDTKLLETTEQETQYSAPVKEAIQYL 161 Query: 156 QSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNIT 214 + + +R +A L ++ S K ++S +T R++ A ++L +I Sbjct: 162 EEHLHEPVTMRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRVQRAKELLTNTRLSIN 221 Query: 215 QVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 ++A+ GY + YF+ VF++ G++P Y Sbjct: 222 EIAEKAGYQTAKYFVKVFRSHEGVSPGQYRKNVSH 256 >UniRef50_UPI00017895AE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895AE Length = 353 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 6/164 (3%) Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRS----S 146 H E+ E + + ++ + + L+ R+ Sbjct: 185 HMLISELLSALEERGLMLNMDTGEEQWAQDDPLACRRQTEDKVKEMLALIKGSRNLGSRH 244 Query: 147 VRDSVCRIIQSDIQ-HYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQ 204 R I+ + +L+ VA S+ +S + L + K N ++ + + + RM A + Sbjct: 245 NIQKAKRFIEENYAMEDLSLQEVADSVGMSVTYLSRTFKSETNMNFVKYLVQVRMEKARE 304 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +L + + A G+S +F FK F+GLTP Y + + Sbjct: 305 LLAESELSAQEAAYRVGFSDYVHFSKTFKKFHGLTPSAYRKQCK 348 >UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR07_9CLOT Length = 515 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 55 ITHINRNIINDYLLFLNKNL-TCVKPWSRLATPVIACHSRTPEVFR-LAANHSKQQPSRP 112 + N + + L + + + P + +I S F + + + + Sbjct: 317 LFDKNPDAAKELLEQMKQEITDIRYPLHKAKIKMINLCSAVFRRFGEIYVSDTAEDMESR 376 Query: 113 CEAELTRA----LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIV 168 ++++ LF V ++++ + + + + + D + R I ++ Q L+ + Sbjct: 377 FYLRISQSTTLYSLFQVCREMIDETNQV-ISGRLEKHDLVDQISRYISANYQSNITLQDI 435 Query: 169 ASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 A + +S + + + + + ++ + R+ A +L + ++AQ+ G+ +Y Sbjct: 436 ADQIHISSAYVSRLFRNKTGITITEAINRARIDQAKLLLGNPEYKVYEIAQMVGFEDAAY 495 Query: 228 FISVFKAFYGLTPLNYLAKQ 247 F SVF + G +P Y +++ Sbjct: 496 FTSVFTKYVGCSPSEYRSQK 515 >UniRef50_A3DK80 Two component transcriptional regulator, AraC family n=3 Tax=Clostridium thermocellum RepID=A3DK80_CLOTH Length = 544 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 12/236 (5%) Query: 17 EVEVSVNNHATFTLPKNYLAAFACNN-NVIELSTLNHVLITHINRNIINDYLLFLNKNLT 75 + N K + + + N ++L+ I + + N+ + Sbjct: 319 DYNEKQNLLYPAEREKMLVESIMSGDDNALKLAENMFDDIAIGTGDNLKRIAFAANQLVF 378 Query: 76 CVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRF 135 + + + I + + + + S+ E LS E Sbjct: 379 NISNFIDMQYDFIN---KLYDFRKFNNMDFSKFSSKDEIKEF-------FLSFVTELLNV 428 Query: 136 IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIV 194 + +++ C + + I L +A L +S + K E ++ + V Sbjct: 429 VKEYKPAQNNTLIKKACEYVLNHIDQEITLMTIADYLNISKNYFCSLFKQETGYNFLEYV 488 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 T+ +M +A ++L N +V+++ GY SYF +F+ + L+P Y + Sbjct: 489 TKVKMEWAKKLLREGNYKTYEVSEMLGYREASYFSRLFRKYTKLSPAEYKKNFENQ 544 >UniRef50_A4XFU2 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFU2_CALS8 Length = 508 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 14/220 (6%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 L AF + +N + ++ N K + ++ PV+ Sbjct: 302 EVELLNAFMALDKEKIALLVNKIFEELEDQGDKNSIENVYKKLFDLILTKAKEICPVLKD 361 Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 F L S +++ I + + Sbjct: 362 EFAKSMAFSLNMQESNNIE-------------KSLIEFVHYCIDKIQNVKESRHKKIIKD 408 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 I+ + + L +A +SP+ K K E S+ + E R+ A ++LL Sbjct: 409 AITYIERNYANQIFLSDIAEVCGVSPNYFCKIFKEETGKSFVDFLNELRINKAKELLLST 468 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 N +VA+ G++ YF +FK + G +P + ++++ Sbjct: 469 NLKSYEVAEKVGFNDYKYFSMIFKKYTGTSPSKFKEERQK 508 >UniRef50_UPI0001C36780 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36780 Length = 491 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 76/199 (38%), Gaps = 4/199 (2%) Query: 52 HVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSR 111 L++ + ++I ++L +L P + + + ++ Sbjct: 289 KELLSKEDLHLIRNHLNAKRVKEAKEFCLKKLIQPDMTTVLQLEQSYQALLGICFTMDME 348 Query: 112 PCEAELTRALLFTVLSNFL--EQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA 169 L L +++ + + D + ++ + +L +A Sbjct: 349 AIYRPLWDFDDMNGLLDYICSMACCSGETDRTVNEGDIIDEIQAFLEDNYYCEISLNELA 408 Query: 170 S-SLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 + ++P+ L + K +S+ + RM+ A ++L + NI +VA + GY+S SY Sbjct: 409 ATKYFMNPNYLSRLFKARTGMGFSKYLLGLRMKKAEELLENGDMNINEVALMVGYTSPSY 468 Query: 228 FISVFKAFYGLTPLNYLAK 246 FI FK ++G TP K Sbjct: 469 FIQNFKKYFGRTPGTQRNK 487 >UniRef50_C6CTL6 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTL6_PAESJ Length = 533 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 82/209 (39%), Gaps = 14/209 (6%) Query: 48 STLNHVLITHINRNIINDYLLF--LNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHS 105 ++ + + + R+ I LF N+NL + + + + V + Sbjct: 329 TSGDAEELNRLFRDYIQAVRLFVQYNRNLAITSVYGCIVYLMKEMNELGISVNKA----- 383 Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD-----SVCRIIQSDIQ 160 + +L+ F +++ F+E++ + R S +D V I Sbjct: 384 -DPDNHGLLEQLSSFPTFEMMTRFVERTVCDLRVQATERHSSKDVLQLVQVRAYIDEHYG 442 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 L +AS + ++P K ++ Q +TE RM++A+++LL + ++A+ Sbjct: 443 ENITLDSMASLVYMNPYYFSSFFKKHMGENFKQYLTEVRMKHALRLLLQSELMVYEIAER 502 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 GY + F +FK YG P Y + Sbjct: 503 VGYQNARQFSDMFKKKYGKLPQEYKQSFK 531 >UniRef50_C6CVW8 Two component transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=C6CVW8_PAESJ Length = 543 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%) Query: 111 RPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVAS 170 E T L L++ + S + +I+Q D L+ VAS Sbjct: 401 EQLEQYDTLQSLREQAERCLKEIAADFRSLSATPSQIICEAEKILQRDYAESLTLQSVAS 460 Query: 171 SLCLSPSLLKKKLKNEN-TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFI 229 ++ ++P L K K E ++ + +T+ R+ A +ML + Q++ GY +F Sbjct: 461 AVHVTPVWLSKLFKKEKRQTFLEYLTDIRIEKAKEMLGDIQYKVYQISYQVGYKDPVHFS 520 Query: 230 SVFKAFYGLTPLNYLAKQ 247 +FK G TP Y ++ Sbjct: 521 KLFKKQVGCTPKEYRRQR 538 >UniRef50_B8I0K9 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I0K9_CLOCE Length = 532 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 9/203 (4%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHS 105 ++ + I ++N + + + V R + + + Sbjct: 336 DVRYFVNDYIDNLNDIEMKSPIYIHYLFMDVVINAVRFIDELGGEIEKLIPWVANLESFV 395 Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHY-WN 164 S ELT L +L F + S+ + IQS+ + + Sbjct: 396 AGIDSIEKFGELTELTLNKIL-------EFRDTRVEKKYDSIINKAKEYIQSNFSNSAIS 448 Query: 165 LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L V+S + +SPS E ++ + +T+ R++ A+++L + +++A GY+ Sbjct: 449 LNSVSSYVNVSPSHFSTIFSQEAGENFIEYLTKVRVKKAMELLKTTSLKSSEIAYSVGYN 508 Query: 224 STSYFISVFKAFYGLTPLNYLAK 246 YF +FK G+TP Y ++ Sbjct: 509 DPHYFCYIFKKAIGVTPKEYRSE 531 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 96/259 (37%), Gaps = 23/259 (8%) Query: 10 VVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVI------ELSTLNHVLITHINRNII 63 +V L K E + F + + +++ +L L + +I+++ I Sbjct: 277 IVELPNKFKECIDAINYKFYFDNEDIIYYKDLSHLFVYVDDKKLKYLKNEIISNVRYGNI 336 Query: 64 NDYLLFL--------NKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCE- 114 ++ + L ++ +I + +V ++ + ++ + E Sbjct: 337 SNIDILLSELEETLKKSKADKQYIFNLYYLMLIEINMIKAQVLSSSSQYEQEDKLQDIEF 396 Query: 115 -AELTRALLFTVLSNFLEQSRFIALLMYILRSS-----VRDSVCRIIQSDIQ-HYWNLRI 167 +E+ + + L+ L+ S + + + V I+++ + +L Sbjct: 397 LSEILKCKSISELNGVLKMSIQKTIEEVQKHNQSKMGSLIKKVIEYIKANYSYNEISLSE 456 Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 ++ +SPS L + K E + S + E R+ A ++L + +VA G Sbjct: 457 ISEKFFVSPSYLSRLFKKETGKNLSDFINEYRIEKAKELLATTDLKTYEVADKVGIPDPH 516 Query: 227 YFISVFKAFYGLTPLNYLA 245 YF +FK + G +P Y Sbjct: 517 YFSRIFKRYTGYSPSEYKE 535 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 35 LAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHS-- 92 + +C N + + + + I ++ +L + PV + Sbjct: 83 FSHISCTINQKDCHKNIELQLLMVGEETIAQSFKYM-ASLKQPNTPTANCMPVYHLNETP 141 Query: 93 -RTPEVFRL-AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 + F+L + +R + LT++L F +L+ + + + Sbjct: 142 DVVEQNFQLFQQSLPAVADTRLEKTFLTQSLFFILLALNEAGIDVFNVYRFNYDEPKERT 201 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 + R+I D Q W++ +A +L + S L++ L E S+SQ++ + RM A+ L N Sbjct: 202 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 261 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 +I+Q+ G+ S +YF FK YG+TP + A R+ Sbjct: 262 YSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE 300 >UniRef50_C5EUD7 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUD7_9FIRM Length = 286 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 8/170 (4%) Query: 81 SRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM 140 A + P+ + + E A + S L++ + Sbjct: 119 KEYARKLALLCETEPDALYKKYHSQPMIGTEAVEGIKLIAGMIN--SRLLDEK-----VF 171 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRM 199 + V V I +I L+ +A + +S + L KN + + + E R+ Sbjct: 172 SLEYHEVIKKVENYINQNISGPLPLKDIAQHVFMSSAYLSTTYKNVTGRNITDYIQERRV 231 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++ + +I+ +AQ G+S +YF VFK G+TP Y + + Sbjct: 232 SAACFLIRTTSGSISDIAQETGFSDANYFTKVFKKKTGMTPREYRQRWKN 281 >UniRef50_A4XN10 Transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XN10_CALS8 Length = 789 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 88/230 (38%), Gaps = 13/230 (5%) Query: 25 HATFTLPKNYLAAFA--CNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 + + + A C + + E + I++ + + ++ L+ + + Sbjct: 566 EYPYDIENQIIKAIKSKCPSKIEEAVNMFFDYISNFTPDDVFQSII----QLSIMLNRTF 621 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYI 142 + +++ + ++ + ++ Q E L + E ++ + Sbjct: 622 NVSSLVSKEVKVTSLYNFKSLFTQIQEYETLEEIKKLMLTIST-----ELAKTFENETLV 676 Query: 143 LRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMR 200 + V V I + + +A + LSP+ ++ K N S S + E RM Sbjct: 677 KKKEVAQQVKEYIDENYSRPDITIYTLADKVNLSPNYVRLIFKEIYNISPSDYLLEVRMN 736 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 A ++L+ + + ++A+L G+S YF FK + G T + + RQK Sbjct: 737 KAKELLIQTDYTVKKIAELVGFSDNRYFYITFKRYTGKTAEEFRKEHRQK 786 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 20/172 (11%) Query: 76 CVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRF 135 + +L P + + + F L E + LL + Sbjct: 366 LLDELVKLTPPGVGVYQSVADFFNL-----------TELKERIQHLLELSMYR------- 407 Query: 136 IALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIV 194 +A L + V ++V ++IQ D L ++ + L+PS L K E + +Q V Sbjct: 408 LASLRKEGGNRVIETVKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYV 467 Query: 195 TECRMRYAVQMLLMD-NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + RM A ++L + + +V + GY + YF VFK G+TP Y Sbjct: 468 LQLRMMKAKELLKKRLDLKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEYRN 519 >UniRef50_C6D8S9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8S9_PAESJ Length = 534 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 6/232 (2%) Query: 21 SVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPW 80 V + + K N E S L T + I D L Sbjct: 304 RVFRLSDYKREKKT---ITAQPNFQEWSALIEQGKTCELKRHIEDLFDRLKYGQVDHAYM 360 Query: 81 SRLATPVIACHSRTPEVFRLAAN--HSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIAL 138 ++ + + + +++++ A + + F ++ + Sbjct: 361 VSYYFGLVHTVFQVLQRRSVPVETVYAEEEWHSGENAMKSLGAMKAWTIQFAAKASDCLV 420 Query: 139 LMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTEC 197 S+ V I+ ++QH N +A + L+P+ L + K S + + + Sbjct: 421 KQGKDVSNTIAKVQGYIEENLQHDLNREEIARHVYLNPAYLSRLFRKETGKSLTDYMVDR 480 Query: 198 RMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 RM +++ L + N I+ +A GY+S S+F FK G+TP +Y K + Sbjct: 481 RMFRSIRELKLTNHKISDIAISVGYASFSHFSKQFKKSTGMTPQDYRKKYQN 532 >UniRef50_B2I366 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2I366_ACIBC Length = 341 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 5/210 (2%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLN--KNLTCVKPWSRLATPVIACHSRTPEVFRLAAN 103 E ++++ H + I+ L F + A V+ + Sbjct: 132 EQVGADNLVNRHFSECAISGVLRFFKFITEGQFHPIFIDFNFSEGASEDEYFRVYGCPVS 191 Query: 104 HSKQQPSRPCEAELTRALLFTVLSNFLEQSRF--IALLMYILRSSVRDSVCRIIQSDI-Q 160 +++ + + L+ L+ I L + R + V R I S + Sbjct: 192 LGQKETRLYFDPAILDFQLWQAEPELLQLHEQLAIEKLQELARYDLVGEVRRAIGSTLES 251 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLC 220 L VA+ L ++P L+ +L NTS+ QI+++ R R A ++L N+++ ++ L Sbjct: 252 GETTLETVAAQLNITPRRLRTQLSEANTSFQQILSDYRCRLAKKLLANTNESVERIVYLT 311 Query: 221 GYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 G+S S F FK + TP+ Y +++ + Sbjct: 312 GFSEPSTFYRAFKRWTNETPVEYRKRKQHR 341 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 5/229 (2%) Query: 22 VNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWS 81 + L + + ++ + H L+T + +I ++ P+ Sbjct: 74 LMVLERNQLINITMQEV-DGHLSFDVLDIPHELLTIAHELLIE---KLQTEHQPGEHPFR 129 Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAE-LTRALLFTVLSNFLEQSRFIALLM 140 + + A ++ R + K+ E E + L +LS F+ + F ++ Sbjct: 130 IVYSNDFAARKEVFDLLRFTLSQEKKGIFENEEKENIATYALLLLLSGFIHDTAFAGIIS 189 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMR 200 + SV+ V ++ ++ W L V+S++ +S S LK+KL E T++S++ RM Sbjct: 190 RSAKLSVKYKVYNLLYTEPDKQWKLDDVSSAIFMSASTLKRKLATEGTTFSELYITARMN 249 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++L ++T VA LCGY S SYFI+ FK + +TP ++ Sbjct: 250 LASKLLRTGKYSVTNVAVLCGYDSVSYFIACFKRQFNITPSAFMKSVNH 298 >UniRef50_UPI0001788EF7 two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=UPI0001788EF7 Length = 516 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 118 TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 R+ ++ ++ L++ + + S + + V Q +L+ ++ L + P+ Sbjct: 388 LRSHVWRIVERSLQRLQEAEQGYSLHVSFLVEQV----QHHYPEELSLKTLSQRLQMHPN 443 Query: 178 LLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 L + + E S+S + + R+ A Q+LL ++ +A GY+ +SYF FK + Sbjct: 444 YLGQLFQQEVGASFSDYLNQYRIEKATQLLLHTDQKTADIAFSVGYTDSSYFYRQFKKYT 503 Query: 237 GLTPLNYLAKQR 248 G++P + R Sbjct: 504 GVSPTEMRSMYR 515 >UniRef50_C7G6J0 Putative response regulator receiver domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6J0_9FIRM Length = 533 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 11/219 (5%) Query: 33 NYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHS 92 N L + + + R + L + + Sbjct: 324 NILKKIKTGDEQALKEAVKESVTQLSGRGASLQKYQIF---------ITELIAEIFRFGT 374 Query: 93 RTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVC 152 + + + E AL +L + I S Sbjct: 375 LNGLNLDEIFSGTGDIYREVLQMESPEALENWLLKTGRQMQEIIQNGRQDTTKSFVTKAI 434 Query: 153 RIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDN 210 ++ N+ V +L +S + K E ++ +TE RM A+ +LL + Sbjct: 435 EYVREHYADSGLNVESVCKNLSVSTAYFSTVFKKETGKTFINYLTEYRMEQALDLLLNQD 494 Query: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 + +A+ GYS +YF FK +G++P Y A++R+ Sbjct: 495 EKTYVIAEKVGYSDPNYFSYAFKKQFGMSPSKYKAEKRK 533 >UniRef50_A6TRZ8 Response regulator receiver protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TRZ8_ALKMQ Length = 529 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 14/243 (5%) Query: 3 LSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNI 62 LSS E + + N+ + + ++ L + + + + + Sbjct: 295 LSSDEAVTHF-QDMNPTYNSNSAYPENKERLLIHKLLIDDIEGFLKVFDEIFLWLM--DH 351 Query: 63 INDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALL 122 + + + L + + P E + + EL + L Sbjct: 352 YEEDVDKIKSRLIELLILMKRNIPYEMKGKLDDEKYLIQLLKIDNI------KELKNSYL 405 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 + S I + + + IQ L VA + +S K Sbjct: 406 NYIRSIIFS----IEEIRKNELNGLITKALAFIQKHYNENICLNDVAQEINMSYHYFSKF 461 Query: 183 LKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K ++ +TE ++ + ++L + +I ++ GYS +YF FK G+TP Sbjct: 462 FKESTGKNFVDYLTELKIERSKELLKNQSISIKEICYEIGYSDPNYFSKAFKKITGVTPT 521 Query: 242 NYL 244 Y Sbjct: 522 AYR 524 >UniRef50_C6LL33 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL33_9FIRM Length = 529 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 70/217 (32%), Gaps = 12/217 (5%) Query: 41 NNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH--SRTPEVF 98 + ++ S + + I + + + + +K R V C Sbjct: 310 GPSALKSSNVMERYLREITQAVELLSVERADAAAELLKAEVRGTKDVRGCEIAELVSSAC 369 Query: 99 RLAANHSKQQPSRPCEAELTR--------ALLFTVLSNFLEQS-RFIALLMYILRSSVRD 149 + + H + Q + + LF L +F Q + Sbjct: 370 DIFSAHVQMQERSQKMEKFRQRCGQCRNMEELFACLQDFQRQEIEAMLRKRENDTVRPIR 429 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLM 208 IQ+ L V+S++ LS + K E +++ + + RM A +L Sbjct: 430 IAKEYIQNHYSEPITLEEVSSAVGLSTAYFSTLFKKTEGGGFAKYLIQVRMEQAKSLLRE 489 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 N + ++ + GY+ +F F+ G+ P Y Sbjct: 490 TNTPVAEICRQVGYNDIKHFTHTFEKMVGVKPATYRK 526 >UniRef50_C5EKG4 Response regulator receiver protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKG4_9FIRM Length = 535 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 74/219 (33%), Gaps = 3/219 (1%) Query: 30 LPKNYLAAFACNNNVIELSTLNHVLITHINRNI-INDYLLFLNKNLTCVKPWSRLATPVI 88 L F N E+ + + I R + + + V + L I Sbjct: 316 FSSFDLPEFDKENLFFEIKSGSPQGIEDALRELQDTLSGRQVLSYMQLVLIITNLYGECI 375 Query: 89 ACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVR 148 +Q R E + ++ + + + + Sbjct: 376 RLPEEAGGNAEEILGDPRQYYQRILEKKKRNDMIEELGRACFLIHAYFEKISGSRYKGIM 435 Query: 149 DSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQML 206 + + ++ ++ VA+ +S S L +KNE ++ + +T R+ A L Sbjct: 436 ERAAQYVEEHYSEEGLSMGDVAAYAHVSVSYLGMIIKNETGQTFIEYLTGIRIEKAKYFL 495 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 N +VA CGY++ SYF +VFK G+TP Y Sbjct: 496 KHTNMKNYEVAIACGYATPSYFSTVFKGMCGMTPSEYRN 534 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 13/177 (7%) Query: 85 TPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYIL- 143 ++ VF +++R+ L++F + + Sbjct: 304 NENFIYYTEFFHVFNAVIASIYTSYGLNLPDDISRSFSPMALADFNRSEDLLKSVNASAE 363 Query: 144 -----------RSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYS 191 RS + D+V R I++ + NL ++A+ LSP+ L +K S Sbjct: 364 ALVTKVRELTGRSEIVDNVIRYIKNHYKEDINLNVLANEFFLSPAYLSRKFSQTTGVSIM 423 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + + R+ A +L ++I+++A GY +YF +FK G+TP + + Sbjct: 424 SYLEDYRINVATDLLKGSERSISEIADQVGYYDANYFTKIFKKVKGITPKEFRKMSK 480 >UniRef50_C6CTB8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTB8_PAESJ Length = 530 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 11/202 (5%) Query: 54 LITHINRNIINDYLLFLNKNLTCV--KPWSRLATPVIACHSRTPEVFRLAANHSKQQPSR 111 L + ++L F ++ + P +R + + AA + + P+ Sbjct: 328 LTALLEDGQHREFLAFASELFHTLAESPGARYEHVEYLYTEIIHVLRKHAAKTAFELPNW 387 Query: 112 PCEAELTRALLF----TVLSNFLEQSRFIALLM----YILRSSVRDSVCRIIQSDIQHYW 163 + F ++S +Q + ++ ++ + DSV + ++ Sbjct: 388 NLGTPIASLESFTDWRQIISVIEQQLKRLSSVLDGGAERSCDDIIDSVQQYVRQHYNEEL 447 Query: 164 NLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGY 222 +L+ V+ + P+ K+ K SY+ VT R+ + ++L I +++QL GY Sbjct: 448 SLQWVSDKYFIHPNYFSKRFKQIVGISYNDYVTRVRIERSKELLKTTTLKIARISQLVGY 507 Query: 223 SSTSYFISVFKAFYGLTPLNYL 244 YF SVFK G++P Y Sbjct: 508 EDQGYFCSVFKKVTGVSPSAYR 529 >UniRef50_UPI0001787D2D two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D2D Length = 535 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 10/218 (4%) Query: 30 LPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIA 89 AA A + +L +LI + + L + + + I Sbjct: 324 AETGIAAAVANREREKAIESL-SLLIRQLLDGDYPSPSHLKHSILYVLVNLVKASEASIR 382 Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD 149 E + Q P+ E+ + + I + Sbjct: 383 SE----EANNFVSEMEFQIPACATLDEVEEKAGYYL----NRIIDSIENRRNNKNERIIA 434 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLM 208 + +L +VA SP+ ++ + ++++ + + RM A+QML Sbjct: 435 MCKAYLAEHYMEDLSLELVAKRFFFSPAYFSSFFRSHTSMTFTEYLLKLRMDKAMQMLEG 494 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 N+ I+++A G+ YF +FK GL+P + K Sbjct: 495 GNRKISEIALSVGFRDAGYFTRIFKRETGLSPEEFRKK 532 >UniRef50_C4GDI6 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDI6_9FIRM Length = 523 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 15/220 (6%) Query: 40 CNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFR 99 ++ +L L L+T + + L+ + SR P S ++FR Sbjct: 303 PEGSLSDLQNLG-RLLTDALADGRKEDANQYRAELSDLSRKSRALLP-SQIKSLYIDLFR 360 Query: 100 LAANHSKQQ-----PSRPCEAELTRALLFTVLSNFLE------QSRFIALLMYILRSSVR 148 + ++Q P P E+ + + L + ++ F L + Sbjct: 361 ELDHIREKQGIVPSPLTPTESVMDQVNACFCLDDLNRGLKDRIRAYFEDLSSQKAENQTI 420 Query: 149 DSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQML 206 + I +++ +A LS S L K + + +T+ RM A Q+L Sbjct: 421 YLIRSYIGQHYSQSSLSVKDIADYANLSVSYLCTFFKGETGQTLNAYLTDFRMERAKQLL 480 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 +++++ + GY+ +YF F+ GL+P + K Sbjct: 481 SDPRNRVSEISGMVGYNDGNYFSKSFRKSTGLSPTEFREK 520 >UniRef50_C6IWJ3 Response regulator n=2 Tax=Bacillales RepID=C6IWJ3_9BACL Length = 539 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 2/142 (1%) Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLM-YILRSSVRDSVCRIIQSDIQHYWN 164 ++Q ++ L LS+ + V D + I Sbjct: 398 EEQITKELVGLTGLEQLTEWLSDKITLICSSRQWRGNSKHRQVVDYMTGYIHEHYAEDIT 457 Query: 165 LRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 L ++ L +S + L KN +++ +T R+ A ++LL N + +VA+ GY Sbjct: 458 LAELSEKLYISRNHLSIIFKNITGETFNNYLTRVRIEKARELLLQRNMLVYEVAEQVGYK 517 Query: 224 STSYFISVFKAFYGLTPLNYLA 245 + YF ++FK G++P + + Sbjct: 518 NVPYFSTLFKKITGMSPTDLIK 539 >UniRef50_UPI0001788F00 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F00 Length = 533 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 80/229 (34%), Gaps = 13/229 (5%) Query: 26 ATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLT--CVKPWSRL 83 L + + L + + Y K CV R+ Sbjct: 306 QYIGLEERLYQQLLEQIEELHFEKLEETIRSLFESFQEKLYAPEAVKTAINQCVLGVVRV 365 Query: 84 ATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF-LEQSRFIALLMYI 142 + + SR + + + + L+ L + ++F +E + +I L Sbjct: 366 LSSMDGDQSRLSSL---------EPMTEWHDRNLSLQGLKRLFTDFAIESANYIGQLRKE 416 Query: 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRY 201 + I++ +L+ +A ++P L + K ++ + + R+ Sbjct: 417 QHKGGIQKIRAYIEAHYHENISLKGIAGKFYMNPVYLGQLFKKAYGMYFNDFLLQLRVNE 476 Query: 202 AVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 A ++L + I +VA+ G+ + YF++ F+ +TP Y + ++ Sbjct: 477 AKRLLRQTDLRIYEVAERVGFGNPDYFVTQFEKIERMTPSEYRNRLMKE 525 >UniRef50_D2LTH2 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTH2_BACS4 Length = 414 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 7/205 (3%) Query: 45 IELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANH 104 I + + + LIT L K L+ + T H + +N Sbjct: 212 ISVFSQDDELITICFEKNDQKLDDILFKELSD----NIHHTLAFTIHFAISTLQNNLSNI 267 Query: 105 SKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWN 164 S +R + TVL FL+Q + + ++ + IQ Sbjct: 268 SSVYKDTSALMSESRGIGKTVL--FLDQHSDFENEVTHQHHWIIENAKKYIQEHFNKDVK 325 Query: 165 LRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYS 223 +A ++P+ K E S+S+ + R+ A ++LL + ++A+ GY Sbjct: 326 ASELAEKHFITPNYFSVIFKQETGVSFSEYLNSIRIEKASELLLSTANKVFEIAEYVGYK 385 Query: 224 STSYFISVFKAFYGLTPLNYLAKQR 248 YF+ +FK G+TP Y + Sbjct: 386 EYKYFVQIFKRHTGVTPTYYRKINK 410 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 9/249 (3%) Query: 5 SSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIIN 64 S + +++ L + I +H L I + Sbjct: 250 SYQQAETLVSVSRFYGDHPITERMMLKNKLEQ--NESMYEISFKKFHHALSIGDIHLIKS 307 Query: 65 DY--LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALL 122 + + L + R V S + + A + Sbjct: 308 EIGAMFKLLFEYEADPEYVRYIGFV--IFSDIYRQHESVGSQMYHDLLHELNKCDSIAEI 365 Query: 123 FTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKK 182 VL + LE +R+ +L + V +I+ D + +A +L ++ L + Sbjct: 366 REVLHHALEATRYDQVLKQHNPN--IQKVLQIVLKDYAQDITISSIADTLHMNAMYLGQL 423 Query: 183 LKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL 241 K E N S+SQ + R++ A +LL N NI ++A+L GY+S+ YF FK G++P Sbjct: 424 FKKETNKSFSQYLNHFRIKEAQNLLLKSNHNINEIAELVGYTSSGYFYKNFKKECGISPK 483 Query: 242 NYLAKQRQK 250 Y + ++ Sbjct: 484 EYRERYLKQ 492 >UniRef50_C6D708 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D708_PAESJ Length = 766 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 5/160 (3%) Query: 94 TPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCR 153 VF A ++ ++ + L+ + ++ R + Sbjct: 607 IAAVFGSRAAYADLIARAETLKDMEKCLI-EMCDRIIDYHR---EKRSKMTDVTLQLAID 662 Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKN 212 + ++ + ++ VA + S S L + K + + + + R+R A ++L N + Sbjct: 663 YMDANFNNNISVDTVAEYVERSSSYLSRIFKESMGMTINDYLIQLRIRRATELLGQVNLS 722 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 I ++ GY++ SYF +FKA GLTP Y + + + Sbjct: 723 IEEICHEIGYANVSYFNKIFKARTGLTPGQYRQQHAAEKL 762 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 24/260 (9%) Query: 6 SEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNN-----------NVIELSTLNHVL 54 E ++++TE V+ + L + + L Sbjct: 39 DELELLLVTEGTAVFRVDLQD-YELQAGEAIFVNSGELHSGYVVGGKPCSFDAVVFHSSL 97 Query: 55 ITHINRNIIND-YLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPC 113 + + + + D Y+ + + V R P E+ + + + Sbjct: 98 FSSGSIDYLFDRYISPVLEKRYEVPAHLR-REPGPG-----MELLAMLDQIFEVHRNEQA 151 Query: 114 EAELT-RALLFTVLSNFLEQSRFIALLMYILRSSVRDS---VCRIIQSDIQHYWNLRIVA 169 +ELT + LLF++L+ + + + + V I+ + L+ +A Sbjct: 152 ASELTIKGLLFSILAKLVSLGKPSVRVKPEQEGYRIERLKTVIEYIEQNYAEPIPLQKLA 211 Query: 170 SSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF 228 +S S + K S + + R++ A L + I +VA G++S SYF Sbjct: 212 ELARMSESYFCRFFKRITTKSPIEYMNSYRVQQAASRLRQTDAKIMEVALDVGFNSLSYF 271 Query: 229 ISVFKAFYGLTPLNYLAKQR 248 +VF+ +G TP Y ++ + Sbjct: 272 NTVFRQRFGCTPREYRSRLQ 291 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 85/189 (44%), Gaps = 9/189 (4%) Query: 66 YLLFLNKNLTCVK----PWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAEL--TR 119 ++ LN+ L + +S +++ ++ EL Sbjct: 49 FIEKLNQQLNFRELCDGVFSGNVAVSFTLRPGIVDIYSALKAMVEKGCGNRSNDELLDIN 108 Query: 120 ALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLL 179 ++L +L +F + + SS+ + +I D+ W L+ +A + +S S + Sbjct: 109 SMLLYLLMHF---EQSASQAETRSYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTV 165 Query: 180 KKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 K+KL E T+++ ++ R+ A +M+ + +++ +A+LCG+ SYF + F+ YG T Sbjct: 166 KRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACFRKEYGAT 225 Query: 240 PLNYLAKQR 248 PL Y + + Sbjct: 226 PLAYRKQAQ 234 >UniRef50_C6CVD2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVD2_PAESJ Length = 536 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 1/150 (0%) Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ 160 A + E + F + + + ++ + S + V I + Sbjct: 385 AQQLYENHACSSVETATRSVVQFKLWVSCIAEAAGSLFTRTMTVSPIVQKVKAYIAEHLN 444 Query: 161 HYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 + +AS ++P+ L + K + + + RM A ++L +++I+++A Sbjct: 445 EELSREQLASIAFVNPAYLSRLFRKETGMVLTDYILKERMERAAELLATTDRSISEIADG 504 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 Y + SYF +F+ +G+TP Y R+ Sbjct: 505 LSYGNFSYFARLFRKVHGVTPQEYRKPYRK 534 >UniRef50_C6IXH5 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXH5_9BACL Length = 524 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 10/217 (4%) Query: 34 YLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSR 93 LAA + + + V + I + L N R Sbjct: 304 LLAAVLQGDPGSTGAVVEEVFGALASSQIGLETLRAFAAN--VELTLCRRIKKAGG---- 357 Query: 94 TPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCR 153 + F + ++ + + + + L + E S +A L ++ V + Sbjct: 358 DADAFMVRVQGNEGESNGISDYAALKPYLLKLCR---EASLLLAGLRRKNENNTIFQVIQ 414 Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKN 212 + + + L+ +A ++P+ L + K E +++ + E R+ A ++L + Sbjct: 415 YVDEEFRSKLKLQTLAKQFHMNPTYLGQVFKKETGKTFNDYLNEKRLEEAKRLLKRTSMK 474 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 I+ +A GY +T YFIS FK G+ P Y ++ + Sbjct: 475 ISDIALQVGYPNTDYFISKFKQSIGMLPSVYKSEFQH 511 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 12/218 (5%) Query: 34 YLAAFACNNNVIELSTLNHVLI---THINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 Y + I+ S+ VL + + +I D+ + + R ++ ++ Sbjct: 271 YAVQAETKDQTIDFSSFRRVLQNKQLEVAQKMITDFFEQF-QLAAMMPEDIRYSSFLLFM 329 Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 + E+ L Q + +A+ + L +LS + R S + Sbjct: 330 EIQ-RELIDLEDEEYLQGIEKIHQAKTVQELQQLLLSFIKKHQRQ------KKYSDNVEK 382 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 V I+ Q L+ V+ +L L+ L + K E S+S + RM A Q+LL Sbjct: 383 VIVILHQHYQEPLTLKEVSENLHLNVMYLGQLFKKETKKSFSAYLNHLRMEKAKQLLLHS 442 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 N+NI ++A GY++T+YF +FK G +P Y Sbjct: 443 NQNINEIASEIGYNNTTYFSKLFKKIVGRSPKEYRENS 480 >UniRef50_C6CVE0 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CVE0_PAESJ Length = 515 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 82/252 (32%), Gaps = 20/252 (7%) Query: 3 LSSSEPCVVILTEKEV--EVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 + S P E V+ + + L + + L Sbjct: 278 IDPSLPVKYRFYEDTPVLGVTRDGYPVKLLEQQLFDRIRLGQWEQVRNDLTD--FIRRYE 335 Query: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 N L + L + SR+ + +F +Q + + Sbjct: 336 NEGASLLHTQQRVLELLWIASRVLLEMGV--EIDTPMFSFQVRDYRQLRAE------SEH 387 Query: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 LL + ++ E I + + I +L + + LSP + Sbjct: 388 LLERMRQSYTEHHERIE-------PDAIQQIKQYITDHSHEDISLEAIGRMVGLSPFYIS 440 Query: 181 KKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLT 239 K K++ +Y +TECR++ A++++ +++ ++ + GY +YF VFK ++ Sbjct: 441 KMFKDQLGINYIDFLTECRIKKAIKLMGDPERSLKEITYMVGYHDPNYFSKVFKKMCEVS 500 Query: 240 PLNYLAKQRQKV 251 P Y K Sbjct: 501 PTEYRKTLLGKS 512 >UniRef50_C4ZBY2 Two-component response regulator n=4 Tax=Clostridiales RepID=C4ZBY2_EUBR3 Length = 534 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 22/232 (9%) Query: 36 AAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTP 95 + ELS L ++ ++ ++ N + H Sbjct: 310 RISKDGDEGNELSNLFKMICIGKIEDVGQAVEAYMQHNFMSQQSLENY-------HVAVM 362 Query: 96 EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNF-------------LEQSRFIALLMYI 142 E+ + E + L+ LSNF +A Y Sbjct: 363 ELISELYHFMSNNELNAQEISGSVGRLYNELSNFEPVVLKQWLLDFSSRLHDDMADARYN 422 Query: 143 LRSSVRDSVCRIIQSDIQH-YWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 + S+ DS + + + L L +S S K E +S+ + +T+ RM Sbjct: 423 SKKSLIDSAKDYVHRNYRSVDLGLDDTCKELGVSNSYFSSLFKKETGSSFVEYLTDYRMD 482 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVM 252 A +ML+ + +AQ GY+ +YF VFK YG++P Y + + + Sbjct: 483 KAARMLVETDDKSYVIAQNVGYADPNYFSYVFKRKYGVSPSRYRTEYEKNKV 534 >UniRef50_C0C2A1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2A1_9CLOT Length = 536 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 8/157 (5%) Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD 149 + P+ + H + + A + + L +++E+ +++ S Sbjct: 384 YNIEIPDQYPELLKHLEVLGTIHEAAGYLKRYMVHSLMHWIEEKKYVE-------SRPIR 436 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLM 208 + I + L V+ + +P+ K E ++S + E R+ A MLL Sbjct: 437 LARQFIGENYYLPLTLETVSREIGFNPTYFSGMFKKETGKNFSDYLKEIRIENAKNMLLN 496 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + + ++ GYS YF +FK G+TP + Sbjct: 497 TEQQVEDISFAVGYSDIKYFSRLFKKQTGVTPTEFRR 533 >UniRef50_C5ETU0 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETU0_9FIRM Length = 517 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 79/216 (36%), Gaps = 17/216 (7%) Query: 34 YLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSR 93 ++ A + V + +L + IN + + C+ +LA + Sbjct: 312 FMTALFSGDKVASAQEKDRLL------STIN-TMDMQSATQECLHILCQLADQFHVYENE 364 Query: 94 TPEVFRLAANHSKQQ--PSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 + N+ ++ ++ E EL F +S++LE + V Sbjct: 365 FSTLLPERVNYFEKISRLTQVKELELWMNNYFRWVSDYLE------NCREDRQEDVIPRA 418 Query: 152 CRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLLMD 209 I + L+ A + L+ + K ++S +T R+ A +++ Sbjct: 419 RHFIADNYASPEMTLKSTADYVGLNEKYFSTRFTKETGMTFSTYLTSVRLEKAKRLMEST 478 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + + +++ GY + +F +FK YG++P +Y Sbjct: 479 DLKMYEISDRVGYHNVEHFNRMFKKAYGISPRDYKR 514 >UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJL7_CALS8 Length = 291 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 72/169 (42%), Gaps = 11/169 (6%) Query: 88 IACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV----------LSNFLEQSRFIA 137 I T E+++ K QP A + L + + + + + + Sbjct: 109 ILLEPPTEEMWQEVFKKIKDQPLDIEAARRSFFNLTHIDHEKLQSVLDMMHIVAKYILDS 168 Query: 138 LLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTE 196 ++ I S + + I++ L +A + LSP+ L K + ++ + + Sbjct: 169 EMIRISSLSSIEKIIEYIKNHYMEDITLDDLAKMVYLSPTYLSYLFKKQLGITFKEYLIN 228 Query: 197 CRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 R++ + +++ + +I +++++ G +YF +FK +G++PLNY Sbjct: 229 IRLKKSKELIETTDLSIGEISKMVGIEDQNYFSRLFKKKFGVSPLNYKK 277 >UniRef50_A5Z5R3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z5R3_9FIRM Length = 509 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 3/202 (1%) Query: 46 ELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHS 105 E T L +++++ L N T + T + R V Sbjct: 306 EYETAILQLNFKAAKDVVSTLFSNLQSNFTDEASVKNICTQIYLISYRL--VMSTYNLPM 363 Query: 106 KQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNL 165 ++ + L +++S+ + + SS + I+ ++ +L Sbjct: 364 DEKYVKMLTESSDIFQLKSIVSDMINDLQIQLTQSVKKYSSFIEESLNYIKEHLEDDLSL 423 Query: 166 RIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSS 224 +A + ++ S + K E S + R+ A ++L N ++++ G Sbjct: 424 EQIAQHIHINESYFSRTFKKECGNSVISYINNLRINKAKELLATSNLKTFEISEAVGIHD 483 Query: 225 TSYFISVFKAFYGLTPLNYLAK 246 +YF +FK G++P Y + Sbjct: 484 PAYFSVLFKKNTGMSPKAYRDQ 505 >UniRef50_C6J0N4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J0N4_9BACL Length = 533 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 10/217 (4%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 + +L A + + L+ LI I + +L + + Sbjct: 325 EQAWLEALQQLRSEEAEAMLHDYLINVRQLRIDKSLVYEWAIDLLDRLEEQIHSPSLNGQ 384 Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 L + Q + EA + RA + + + + Sbjct: 385 AEPVKRA-ALYQSVYDCQTLQEIEAAIWRAAAHYL--------ELLMERATDKNAKLVHQ 435 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMD 209 VC+II + ++ ++S + LSP+ L+ + + +T R+ A +ML Sbjct: 436 VCQIIDNTYHEPITIQSLSSQVYLSPNYLRSIFRDKTGMTIHDYLTRIRLEKAKEMLADP 495 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + + +AQ GY STSYFIS+F G+TP Y Sbjct: 496 SLKVQDIAQKIGYESTSYFISLFVKNQGVTPNEYRKN 532 >UniRef50_UPI0001C35FBC two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35FBC Length = 508 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 122 LFTVLSNFLEQSRFI----ALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS 177 L L + E+ R I S+ IQ + VA+ + +P+ Sbjct: 376 LTDCLCLWKEECRRIVNSYEESRNGHYSANIRKALAYIQEYYAKDLLVEEVAAYIGKTPN 435 Query: 178 LLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 + E ++ + + R+ A +++ + I ++A+ GYS +YF VFK Sbjct: 436 YFSSIFRTEVGVTFREYLNHYRIERAKELIEESDMMIYEIAEQVGYSDYTYFSQVFKKMT 495 Query: 237 GLTPLNYLAKQR 248 G++P + + + Sbjct: 496 GISPTSMRGRSK 507 >UniRef50_A8RQG1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RQG1_9CLOT Length = 522 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 83/236 (35%), Gaps = 10/236 (4%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKN 73 E + + + +P L F N ++ L T + + YL Sbjct: 295 VESYIYNEPEDSQGYPIPDTRLITFIKEQNKEGITGELEQLKTWLYQKGSESYLYMTFSL 354 Query: 74 LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQS 133 + ++ L + ++F+ K+ + L + + Sbjct: 355 GSF---YTHLMKELGKSGINLQDIFQNPIEEFKKVAAGGTLESSIENLKQNLF-----KI 406 Query: 134 RFIALLMYILRSSVRDSVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLK-NENTSYS 191 + + D IQ+ +++ VA ++CLS S K +++ Sbjct: 407 CDSIRINKSRYGKLIDQAILYIQNHYMSSSFSIDEVAGAVCLSTSYFSTVFKSETGITFT 466 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + + RM A +L + + +++ GY + +YF + FK +YG +P + +++ Sbjct: 467 DYLIKVRMEKARGLLENTSMKMYEISSRAGYENAAYFSAAFKRYYGKSPSEFQSRK 522 >UniRef50_C6CXU8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU8_PAESJ Length = 529 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 8/220 (3%) Query: 35 LAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRT 94 + + LI + + L ++ L + +R VI Sbjct: 305 MQKSDKKPQQAFSREVEKSLIMALRKADKELTLSVFDQYLEQLFQNARYDLRVIKYELEK 364 Query: 95 PEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSV-----RD 149 F + ++ S +L ++ F + + + ++ + Sbjct: 365 LFDF-IVQMLNESGFSMHHVGDLEHLHSEQLIREFAKYQIVLLINQVTNWYNLDSRGNME 423 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQMLL- 207 I +L +VA + L+P K + ++ +T+ R+ A ++L Sbjct: 424 KAKSYITDHYADDLSLEVVADYVQLNPHYFSKLFHERCGITFVDYLTQVRISKAKELLAA 483 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 +++ +++ GY +YF VFK GL+P + Sbjct: 484 DFEQSLKEISMRVGYRDPNYFSRVFKKLTGLSPSEFRQTH 523 Score = 43.4 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 19/184 (10%) Query: 78 KPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIA 137 R + + + F S R + ELT ++ L + +R+ Sbjct: 296 YTKVRYFADMQKSDKKPQQAFSREVEKSLIMALRKADKELTLSVFDQYLEQLFQNARYDL 355 Query: 138 LLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTEC 197 ++ + D + +++ +++ V L L ++ ++ + Sbjct: 356 RVIKYELEKLFDFIVQMLNE---SGFSMHHVGDLEHLHSEQLIREFAKYQI--VLLINQV 410 Query: 198 --------R--MRYAVQMLLMD---NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 R M A + + ++ VA + YF +F G+T ++YL Sbjct: 411 TNWYNLDSRGNMEKAKSYITDHYADDLSLEVVADYVQL-NPHYFSKLFHERCGITFVDYL 469 Query: 245 AKQR 248 + R Sbjct: 470 TQVR 473 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Query: 137 ALLMYILRSSVRDSVCRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIV 194 A+ S + + + + L +A +L SP+ L + +K E T+++ + Sbjct: 292 AVNKENAVSPLVRRAKQYMLEHFSNSGLTLEAMAQALQTSPAYLSRMIKQELGTTFNSYL 351 Query: 195 TECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 T+ R+R A ++L+ I ++A+ GY + YF + FK GL+PL Y Sbjct: 352 TQLRIRRASRLLIATELTIAEIAEQVGYETQHYFSTAFKRATGLSPLQYRK 402 >UniRef50_C4L2Y3 Two component transcriptional regulator, AraC family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2Y3_EXISA Length = 236 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 11/161 (6%) Query: 91 HSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS 150 + + R S +P + ++ L L++ +++ Sbjct: 85 YDEYSYMRRAIQYGSFDYLLKPIDPDVLNDTLSRALADVVKE----------SSEDPIAQ 134 Query: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 + I+ +L+ ++ LS + ++ K + + S+ V RM A ++L Sbjct: 135 IGTYIEQHFAEELSLQGMSERFYLSREYISRRFKQQYGVNLSEYVLTIRMNEAKRLLETS 194 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + I +VAQ G+S YF VFK G+TP + + +++ Sbjct: 195 RQRIYEVAQAVGFSDDKYFRKVFKKQVGVTPNEFREQVQRQ 235 >UniRef50_UPI0001789620 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789620 Length = 540 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 2/130 (1%) Query: 118 TRALLFTVLSNFLE-QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 + L + L ++LE + + R S C+ + + L VA L L+P Sbjct: 410 SLNELKSWLHDYLESTMQAMDRGFGGSRRSEVAEACKYVSLRLDQRITLDDVAGCLHLNP 469 Query: 177 SLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 S + K E ++ + VT +M A ++L ++ + ++ + Y + SYF FKA+ Sbjct: 470 SYFSRMFKKETGVTFIEYVTRMKMERAKELLRQTDRTVGEICESLAYDNVSYFSKTFKAY 529 Query: 236 YGLTPLNYLA 245 G+TP+ + Sbjct: 530 AGVTPVEFRN 539 >UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J482_9BACL Length = 553 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 13/217 (5%) Query: 31 PKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIAC 90 K + + EL L L + + Y F L + ++A + Sbjct: 341 EKELVRCLKVG-SDQELVNLLEELFKALT-DSKASYQDFQLYLLELLTAVIKVAKDIRVD 398 Query: 91 HSRTP-EVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD 149 + + K + +A L ++ + IA + + D Sbjct: 399 LDKLFGDGAGFLGQFVKFSHADEAKAWF--------LDICMKLKQSIATDRQSSYNKLVD 450 Query: 150 SVCRIIQSDI-QHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLL 207 I + H ++ V L +S K E T++ + RM A +L Sbjct: 451 EAKEYILAHYGDHDISIAKVCQHLHISTGYFSNIFKKETKTTFVNYLMGVRMDAAQDLLA 510 Query: 208 MDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 + ++A+ G++ +YF F+ +G++P Y Sbjct: 511 TTDLKAFEIAERVGFADPNYFSFCFRKKFGISPKEYR 547 >UniRef50_B9MP59 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=B9MP59_ANATD Length = 502 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 15/229 (6%) Query: 23 NNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSR 82 + KN + A N+ + II + L K + Sbjct: 286 ELLYSKEYDKNLILAIEEENS-------------QNLQKIIKEMLEDSKKGRYQLDFLKT 332 Query: 83 LATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE-QSRFIALLMY 141 + V+ S L + S + + F E Sbjct: 333 YLSFVVVSISSYFSRIGLNLEDEIEWFSSLRLEFSNVEDIEKNMLKFCEGILNKFRQWKT 392 Query: 142 ILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMR 200 L + + + + I+ + L+ VA L+P L + K ++ + + R+ Sbjct: 393 SLSNGIMSELEKYIKENYNKNLTLKSVAQKFYLNPVYLGQLFKKHYGMYFNSYLQKIRVE 452 Query: 201 YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 A ++L+ N I +++Q GY+ T YFI F F +TP + K R+ Sbjct: 453 EAKRLLMSTNMKIYEISQAVGYNDTDYFIQCFTKFCNMTPNQFRKKYRK 501 >UniRef50_UPI0001C36195 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36195 Length = 145 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 133 SRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYS 191 SR + + + V S+ I+ + N+ +A L+ S L K + + Sbjct: 11 SRLLDGVRNKESADVIISIREYIEKNYDDSLNVADLARKYGLNVSYLSTLFKERTGINIT 70 Query: 192 QIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY--LAKQRQ 249 + RM A+ +L N +T+VA GYS++ YF VFK + G+TP Y + K+R+ Sbjct: 71 SYIEGIRMEKAMNLLRETNWKVTEVAFHVGYSNSGYFSRVFKKYTGVTPGEYGEMEKKRR 130 Query: 250 KV 251 K Sbjct: 131 KT 132 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 9/254 (3%) Query: 5 SSEPCVVILTEKEVEVSVNNHATFTLPKN------YLAAFACNNNVIELSTLNHVLITHI 58 +V L+ + +V +N HA L N + +C+ N + + + I Sbjct: 19 VDHHLIVKLSNVQGDVHINGHA-IELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMI 77 Query: 59 NRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQP--SRPCEAE 116 + I + +++ P + + + + N S + Sbjct: 78 DEESITEAFKYISALKQPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSMEKTL 137 Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 L++ L+F +++ + + ++ R+I D Q W++ +A +L + Sbjct: 138 LSQCLVFILMALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQ 197 Query: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 S L++ L E S+SQ++ + RM A+ L N +I+Q++ G+ S +YF FK Y Sbjct: 198 STLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKY 257 Query: 237 GLTPLNYLAKQRQK 250 G+TP + RQ+ Sbjct: 258 GITPSQFRTTSRQE 271 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 3/220 (1%) Query: 30 LPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIA 89 LP N + N L+ + I + N+ + V Sbjct: 268 LPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTIQRELDAIFNQLSQQHATPEYVRYVVFL 327 Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRD 149 S + + ++ A L+ ++ L + + + S Sbjct: 328 LFSDISRQYPTVLEENYEKIVEEIRASNNLNTLYALMQQVLAEVKNKPKIKKYSES--VS 385 Query: 150 SVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT-SYSQIVTECRMRYAVQMLLM 208 I+ NL+ VA L L+PS L + K E S+SQ + + R ++A ++LL Sbjct: 386 QAVERIEQGYLEELNLKTVADELHLNPSYLGQIFKKETKRSFSQYLNQVRTKHAQKLLLY 445 Query: 209 DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + I ++++ G+++T+YF +FK G+TP + + + Sbjct: 446 TDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEFREQYQ 485 >UniRef50_C6D6F5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6F5_PAESJ Length = 778 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Query: 145 SSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAV 203 + ++ +Q + +L A + +P L K K ++ +TE R+ A Sbjct: 673 KRLIEAAMIYMQQYYRQDISLDNCAEHIGTNPFYLSKSFKVVTGKNFIDYLTELRIERAK 732 Query: 204 QMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249 ++L I VA+ GY SYF +FK G+TP +Y + + Sbjct: 733 ELLRESELKINDVAEQVGYQ-HSYFNRIFKKLEGMTPTSYREQSQH 777 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 1/102 (0%) Query: 148 RDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSYSQIVTECRMRYAVQML 206 V R I + +L +A+ LSP L + + + R+ A +L Sbjct: 183 IAEVARYINAHYDENLSLSDLANRFHLSPYYLSHLFPRVTGLTLVAYINRVRIEEACALL 242 Query: 207 LMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 +T++A GY S ++F VFK ++P +Y +QR Sbjct: 243 RETELPVTEIAYRVGYQSGTHFGRVFKKAKAVSPQSYRREQR 284 >UniRef50_Q9KDT8 BH1123 protein n=1 Tax=Bacillus halodurans RepID=Q9KDT8_BACHD Length = 526 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 6/223 (2%) Query: 30 LPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIA 89 A F ++ + + T ++ + + L + ++ + Sbjct: 305 YEDGTRATFPMESSQKLYDAIRYADATRAKE-VLEEAVGVLGEVPYSTLVGYKVGIEIWT 363 Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFI----ALLMYILRS 145 + + + + + + + EQ I I Sbjct: 364 IITYSLYDIGILIQEMFDEDFDLAQHLTKQGNWQEWIRFLCEQIEHICYHQQWDENIKHK 423 Query: 146 SVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQ 204 + + V I+ + L+ +A L +S + L + K S+ VT RM A + Sbjct: 424 QLIEQVMIYIEKHLAENITLQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKK 483 Query: 205 MLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 M+ N I +V++ GY + +YF ++FK + G TP + + K+ Sbjct: 484 MIQEGNFLIYEVSEKVGYVNPAYFTTMFKKYTGYTPRDLIQKR 526 >UniRef50_A9U777 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U777_PHYPA Length = 561 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 67/182 (36%), Gaps = 1/182 (0%) Query: 68 LFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLS 127 F ++ + +A+ ++ +R + S + ++ Sbjct: 375 PFYEDVGFFLEIYYAIASHLLTQLNRWSVDHAALEEVEMDRVSHYQLHATRKDAFHYLIH 434 Query: 128 NFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-E 186 L + V + R ++ + +L ++ + L+P + + K Sbjct: 435 AALRLIEARDDEKKEHTNQVVSRLNRYVEEHLDSDLSLTTLSDLVHLNPYYMSRLYKQMT 494 Query: 187 NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 + +T+ R++ A ++++ + + ++ + G+ S +YF +FK G TP + K Sbjct: 495 GVNLPDYITDERIKKAKELVVESHLKMHEICKKVGFESPAYFTRIFKKKTGSTPQEFREK 554 Query: 247 QR 248 + Sbjct: 555 HQ 556 >UniRef50_B7K731 Transcriptional regulator, AraC family n=2 Tax=Cyanobacteria RepID=B7K731_CYAP7 Length = 309 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 7/204 (3%) Query: 51 NHVLITHINRNIINDY---LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQ 107 +H L I + + + N + P R+ P + ++R Sbjct: 109 DHFLQIQIEPQFLEQVAQQIDEIKANHVELVPKFRIRNPNLEH--IIMMLYRELTQGMGY 166 Query: 108 QPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI 167 E+ LT AL +L ++ + L L + I ++ L Sbjct: 167 GSKLYIES-LTNALAINLLRDYCVTKISLNLYSGGLSDGQLLLITDYINDNLAGEIKLSN 225 Query: 168 VASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS 226 ++ + +S + K S Q + R+ A +L ++ +VA CG+SS S Sbjct: 226 LSELIGISQFHFSRLFKQTVGISPHQYLMRQRIERAKLLLKNSPLSVVEVALSCGFSSHS 285 Query: 227 YFISVFKAFYGLTPLNYLAKQRQK 250 +F F+ GLTP Y +R + Sbjct: 286 HFGKYFRQITGLTPKEYRVNRRGE 309 >UniRef50_C5EWE8 Response regulator receiver n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EWE8_9FIRM Length = 501 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 68/172 (39%), Gaps = 5/172 (2%) Query: 80 WSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALL 139 R+ + ++ F + + + + + ++ L ++ Sbjct: 333 IFRILANIYQVYTSDRFGFAEKMGEIYRGIEQCTDFDRMKECVYAALG----EAEDSRSG 388 Query: 140 MYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECR 198 +S R I+ + + ++ VA + L+ L KNE ++S+ + R Sbjct: 389 NQAHYTSYVAKAVRYIEKNYRQIGSVSEVAGEVGLNQDYLFHLFKNETGVTFSEFLNSTR 448 Query: 199 MRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 M A+ +L ++A+ GYS+ +YF +FK + +TP + +R++ Sbjct: 449 MNRAIWLLNNTQLKSYEIAEQVGYSNQAYFSRLFKQKFQMTPYEFRNMKRKQ 500 >UniRef50_C9A6S2 Response regulator receiver n=5 Tax=Bacteria RepID=C9A6S2_ENTCA Length = 507 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 11/238 (4%) Query: 12 ILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLN 71 L ++ F K +L A NN ++ ++ + I N+ FL Sbjct: 279 RLVPEQELFLYIESDRFDTKK-FLRALLDNNFLLGITRIEEYFNDMILSNVDP---TFLK 334 Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE 131 + + + + L + + P RL A + + LL T+ + Sbjct: 335 QQASSI--FYTLLSRLEEEFPTAPRFSRLKAEFLHAIGHVQYLEDFSDLLLATID----D 388 Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKL-KNENTSY 190 + + L + + ++ R IQ + +L +A + S + L L S+ Sbjct: 389 IRQQLTTLSPLDEDDLLVAIQRFIQDNYTKSLSLSELAETFHFSYTYLSAFLSAKLKMSF 448 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 S+ V + R+ A ++L + N++++++ GYS SYF +FK +TP Y + Sbjct: 449 SEYVKKTRLDKAKELLTQSDLNLSEISEAVGYSDISYFSRIFKKECQVTPSKYRRLNQ 506 >UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL10_BACSK Length = 298 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 4/184 (2%) Query: 66 YLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTV 125 + +N ++ A+ ++ T + ++ + + + + LL + Sbjct: 100 FFKLCKENRALGNMVNKQASQLLLH--DTDDTYQCLRRLILEVDKKSEQTDFMVQLLLSE 157 Query: 126 LSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN 185 + + + ++ V I + ++ +A+S+ L P L++ K Sbjct: 158 YLIRIAELAEAKVAEPDQQAYV-KRALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKA 216 Query: 186 -ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 S + + R+ A ML + +IT + G +S YF + FK TP Y Sbjct: 217 FTGKSIHEFLISYRINKAKAMLKQTDISITDIPHYIGMNSQQYFSTTFKKHVKCTPSEYR 276 Query: 245 AKQR 248 + + Sbjct: 277 KRHQ 280 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 7/237 (2%) Query: 9 CVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLL 68 C ++ ++ F L L E S L I D+ + Sbjct: 43 CEILYVAGGAGEAILEGKKFRLAPGDLVVVNPGTLHEERSDAKAPLRLIFLA--IRDFAV 100 Query: 69 FLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSN 128 + R+ + + + L S Q E+++ L+ +L Sbjct: 101 PGLPAGCLSQEKYRVLSCGEYRYKMDIYLRELLQETSSQI---EFYQEISQGLVSALLVL 157 Query: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NEN 187 + R L + + + L ++ ++ +S L K Sbjct: 158 VMRLIRINPEDEAALSQEC-QKIKEYLDQNFTSPITLDSLSETVYISKHYLSHLFKEQTG 216 Query: 188 TSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYL 244 S + +T RM A ++L +++V++ GY + YF VFK YG++P+ Y Sbjct: 217 VSPIKYLTSKRMEKACELLSETELPVSEVSKAVGYENPLYFSQVFKRIYGISPVKYR 273 >UniRef50_C6CWB0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWB0_PAESJ Length = 530 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 11/213 (5%) Query: 34 YLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSR 93 +AA + L+ I +Y + + + + ++ R Sbjct: 325 LIAAVQAGDAERAGQLLDDWFSGMRQERIERNY--AVRAVIQLLSVLEQHFASLMLGPLR 382 Query: 94 TPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCR 153 +L A+H K+ S P L E + A SV + + + Sbjct: 383 D----QLLADHWKELSSLPT----IAHYHAYALRFCRELLKAAAERDLDRHQSVAEQIMK 434 Query: 154 IIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-NENTSYSQIVTECRMRYAVQMLLMDNKN 212 +I + +A + LSP+ ++ K + +T RM +A ++L Sbjct: 435 LIAERYHLPLTVEDIAKEVYLSPNYVRTIFKEKTGETILDYLTRIRMNHAAELLKDRALK 494 Query: 213 ITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 + +A Y + SYF SVF+ G TP Y Sbjct: 495 VRDIAHRVSYENVSYFCSVFQKHKGSTPNEYRK 527 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 V + + + I + +A + L+P L + K E S V + R+ A Q+ Sbjct: 429 VAEEIKQYIHAHYGDELTRNDLAEVVYLNPDYLARLFKKETGISLGSYVIQVRISVAKQL 488 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVMW 253 L ++ VA GY++ SYF +FK G+TP Y R W Sbjct: 489 LETTKLSVYAVANQVGYANYSYFSKLFKQEVGVTPNEYKKNPRTAARW 536 >UniRef50_C6JD25 Response regulator receiver protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD25_9FIRM Length = 519 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 59/189 (31%), Gaps = 1/189 (0%) Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRAL 121 ++ + F+ + S + S + + ++ L+ A Sbjct: 330 VLKAFNTFIKATESYNLSPSAVRRCCFEIASSLIFSYMEVSCEVEEGKLDALSKSLSSAG 389 Query: 122 LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK 181 + + I + ++ +A SL ++P+ + Sbjct: 390 KEEACEITRMFIEQLIENDEEDVHYTISNARHYIDEHLAEDISVSSIAESLYITPNYFSR 449 Query: 182 KLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 K ++ + R+ A +L + ++A + GY T+YF FK G +P Sbjct: 450 LFKRITGEGCNEYIVRKRIEKAKSLLETTSIKTGKIAMMVGYRDTNYFSLAFKKHTGKSP 509 Query: 241 LNYLAKQRQ 249 Y + + Sbjct: 510 TKYREEMQN 518 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 18/252 (7%) Query: 4 SSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFAC---------NNNVIELSTLNHVL 54 S E V E V L L N E + L Sbjct: 32 DSYELIFVKKGNIEFWVE---DEKIELRAGDLLIIKPHTRHKFEVVGNFKAEFIVMGFYL 88 Query: 55 ITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCE 114 I L + ++ +++P H R Q+ + Sbjct: 89 KPESKSKI-----EALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKK 143 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 L + + + + S + + I + + +A L + Sbjct: 144 GLLLYIKSIELFIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFM 203 Query: 175 SPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 S S + + K++ + + R+ A + L + N I+++A +CG+SS F +FK Sbjct: 204 SESSISRLFKSQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFK 263 Query: 234 AFYGLTPLNYLA 245 + G +P +Y Sbjct: 264 KYTGCSPTHYRK 275 >UniRef50_C6JBV9 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBV9_9FIRM Length = 527 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 5/191 (2%) Query: 60 RNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAAN---HSKQQPSRPCEAE 116 +NI N ++ + L + + A+ S+++ ++ Sbjct: 338 QNIENYLSKYIQASGITKNFLLHLRLDIEQIVFSYLHKNGIEAHTLFSSEERDELITKSL 397 Query: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 +F L ++++ + S V D V I + ++A + L+P Sbjct: 398 DAVPYMFNYLRYLIQRAVEYNSFINEKDS-VVDIVLNYIHQHYSEDISRTMLADMVYLNP 456 Query: 177 SLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF 235 L + K TS +T R+ A ++LL + + VA GY + SYF +FK Sbjct: 457 DYLARLFKKQTQTSIINYITTYRLEKAKELLLNPDIPVGTVALKVGYGNYSYFSKLFKDV 516 Query: 236 YGLTPLNYLAK 246 G TP Y K Sbjct: 517 VGCTPNEYRKK 527 >UniRef50_UPI0001788789 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788789 Length = 746 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 2/182 (1%) Query: 67 LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVL 126 L L + S A V RT E+ ++ + + +L Sbjct: 563 LERLQRQEATADQLSHFAKSVSVRMRRTVELLKINTDALPDYADMLAYSVTPAQYREVLL 622 Query: 127 SNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK-N 185 ++ I + V + ++S +L +A L +SP+ L +K Sbjct: 623 GELSHATQAIRRKREEHYD-IIQYVIQYLESHYNEEISLEQLAYKLNMSPTYLSGYIKEK 681 Query: 186 ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +++S + R+ A ++L N I +V GY + + FI +FK G TP +Y Sbjct: 682 TGSNFSDQLNAIRITKAKELLETTNMPIQEVGNRIGYRNVTSFIRMFKKITGQTPGDYRK 741 Query: 246 KQ 247 Sbjct: 742 TN 743 >UniRef50_C6JDJ0 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDJ0_9FIRM Length = 517 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 78/227 (34%), Gaps = 5/227 (2%) Query: 25 HATFTLPKNYLAAFACNNNVIELSTLN--HVLITHINRNIINDYLLFLNKNLTCVK-PWS 81 + + YL+ ++V + LN + I L+++ + + Sbjct: 289 EERYLQAEKYLSDEKQEDSVGSEAILNSIKEGNLEKSEAIFEKITEVLSEHKSVQPDIFK 348 Query: 82 RLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELT-RALLFTVLSNFLEQSRFIALLM 140 R R E + A + S+ E + L + ++ + Sbjct: 349 RKIVFFFFRILRYMEPYLKAEHLSELNALDNRLIESQWYSELKKRSAELIKNIIAFREIA 408 Query: 141 YILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRM 199 + D R I+ Q +L +A+ + S K S+S+ +++ RM Sbjct: 409 DSQETDPLDESRRYIEEHYQDEISLEQIAALYHFNASYFSTLFKQRFGISFSEYLSDIRM 468 Query: 200 RYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 A +L + + ++A GY +YF FK + +TP + + Sbjct: 469 EKAENLLKTSSDKVRKIALEVGYKDPNYFNRAFKKRHNMTPEEFRKR 515 >UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LA91_9FIRM Length = 288 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 10/221 (4%) Query: 32 KNYLAAFACNNNVIELSTLNHVLITHINRNII--NDYLLFLNKNLTCVKPWSRLATPVIA 89 L + + + + I I + ++ + + +P Sbjct: 71 SGELHEIKSGGPSLHHAIVFNPDILDFTLYDICQHSFIRPVTSGNLIFPTLPSVFSP--- 127 Query: 90 CHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILR---SS 146 +F + C + + + +L F + F+ + + Sbjct: 128 -EESQMILFHMQEIIRLYHTLPSCASLSIKIHILQILELFFQADCFLENTISSKEKDSQN 186 Query: 147 VRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQM 205 V I + +L +A +SP+ K E + E R++ A Q+ Sbjct: 187 KLKKVIEYIHENYAGPISLPDLAKICFMSPNYFCHYFKQEIGKPPIAFINEYRIQKACQI 246 Query: 206 LLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 L ++QVA G+ + SYFI F+ + +TP Y + Sbjct: 247 LTDSELPVSQVAISVGFDNFSYFIRKFREYKNVTPTEYRSH 287 >UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FUL3_9FIRM Length = 277 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 3/149 (2%) Query: 101 AANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ 160 + LL L F + S + S IQ Sbjct: 131 LETIIRNHSQHESFLIAQLYLLVDHLIRFSKHSPQQR--PNEIHSFYIREAIHYIQDHYM 188 Query: 161 HYWNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQL 219 ++ +A L+ + + K E + + SQ + R+ + ++L N++I +A Sbjct: 189 DNPSVDQLADICHLNRNYFTRLFKQELHMTPSQFILTYRINQSCELLASTNRSIRDIADQ 248 Query: 220 CGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 GYS+ F S FK G+TP+ + + R Sbjct: 249 IGYSNQFNFSSAFKRVKGMTPMEWRRRYR 277 >UniRef50_A5Z5Z2 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z5Z2_9FIRM Length = 533 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 4/233 (1%) Query: 14 TEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKN 73 T K + + + + + ++ + DY+L + Sbjct: 302 TRKVLYYKKTFDIHVSYKQKLERIVEQLKSTADTLNVDEFHNMIKQLFDLPDYVLTEYNS 361 Query: 74 LTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQS 133 + + + + + K+ + E + L + Sbjct: 362 RNYLMNFVDTFFEINGKVLAEHMNVEVEKEYIKKILNYSRTLEDYQKNLEHKFD---QMF 418 Query: 134 RFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKN-ENTSYSQ 192 + +A + I+ + +A + LSP K + + Sbjct: 419 KILADDAEKQNFRPLRKAIKYIKENYDKQITAETLAEVVNLSPVYFSHLFKKQTGKNMTD 478 Query: 193 IVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLA 245 +TE RM A +ML +K I ++A G+ YF FK G TP Y Sbjct: 479 YITEYRMEIAKKMLFDTDKTIFEIAVAVGFQDQRYFSKRFKQIVGKTPSEYRK 531 >UniRef50_UPI0001787F36 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787F36 Length = 523 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 1/197 (0%) Query: 49 TLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQ 108 L + I + F ++ + I R + H ++ Sbjct: 321 ALFKQDAEMLEELIDGMFRFFRDQRYLLTDMVNVCDELSIMLRQRLRQSGLTQLEHGLER 380 Query: 109 PSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIV 168 A+ + S + + I + + + + + V Sbjct: 381 TIDLEVFNHPDAIRLAISSEVFDLLQLIDRVGIDRSFWIIEKAKKYMADHYLSDLKASEV 440 Query: 169 ASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY 227 A+ L ++PS K S+S+ + E R+ A ++LL + ++A GY Y Sbjct: 441 AAYLKITPSYFSNIFKQSTGKSFSEYMNELRINEARKLLLTTQDKVFEIADRVGYKEYKY 500 Query: 228 FISVFKAFYGLTPLNYL 244 F+SVFK + G+TP Y Sbjct: 501 FVSVFKLYTGMTPKKYR 517 Score = 44.5 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 22/164 (13%) Query: 95 PEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRI 154 +F+ A ++ + L T + N ++ I L + +S + Sbjct: 320 VALFKQDAEMLEELIDGMFRFFRDQRYLLTDMVNVCDEL-SIMLRQRLRQSGLTQ----- 373 Query: 155 IQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTEC---R----MRYAVQMLL 207 ++ ++ +L + P ++ + +E Q++ R + A + + Sbjct: 374 LEHGLERTIDLE-----VFNHPDAIRLAISSEVFDLLQLIDRVGIDRSFWIIEKAKKYMA 428 Query: 208 M---DNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 + ++VA + SYF ++FK G + Y+ + R Sbjct: 429 DHYLSDLKASEVAAYLKIT-PSYFSNIFKQSTGKSFSEYMNELR 471 >UniRef50_C6LBV9 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LBV9_9FIRM Length = 412 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 77/240 (32%), Gaps = 14/240 (5%) Query: 15 EKEVEVSVNNHATFTLPKNYLAAFACNN---NVIELSTLNHVLITHINRNIINDYLLFLN 71 E++ + + A + + H + N + + D + Sbjct: 182 EEDSLRIAAVEERYRYEDQMMEAIQIGDMEKIMEVTQGFKHYRLKPRNDDNLRD----VK 237 Query: 72 KNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLE 131 + R A H + A + +R E ++ + Sbjct: 238 NMMVVWNTLFRKAVQQAEVHPVYIDRISEAFAKQIENAARVTELADLSHVMMRKYCLLVR 297 Query: 132 QSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNE-NTSY 190 SSV I I+ +L+ +A + +S + L + K E + Sbjct: 298 NH------SMRGYSSVIRDAVNYIDFHIREPLSLKSIAEEVNISLNYLSAQFKKETGKTL 351 Query: 191 SQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK 250 + + E R++ ++ +L + I +VA G +Y+ +FK F G T Y + R K Sbjct: 352 THYMNEKRIQSSLILLATTDLPIHEVAAQVGIYDENYYARLFKKFQGQTAKQYRSMMRMK 411 >UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NX83_9CLOT Length = 539 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 9/218 (4%) Query: 32 KNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACH 91 L F N + + ++ ++ ++ + + + Sbjct: 328 SESLEEFLKNGKEEAVHLFVEDYTKTLGKSNMDSFMFCQYMLINIQVGVMKFVEKMGVEK 387 Query: 92 SRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSV 151 + F+ + AE L+ + E+ SS+ Sbjct: 388 ANIDRTFKDYKQQIAAVSTGEKAAEYIEELIIQAIRMRNERLG-------KKHSSLITEA 440 Query: 152 CRIIQSDIQHY-WNLRIVASSLCLSPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMD 209 I + Q +L VA + LS S K E S+ + +T RM A +ML Sbjct: 441 KEFIVKNYQEETLSLSDVADQVGLSSSHFSTTFKQETGESFVEFLTSVRMDKAKEMLCFT 500 Query: 210 NKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQ 247 + +Q++ GY YF +FK G TP Y +++ Sbjct: 501 DMKASQISYEVGYKDPHYFSYLFKKTQGCTPSEYRSRR 538 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 12/204 (5%) Query: 47 LSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSK 106 L + ++ +++L L++ + + A A HS +F L Sbjct: 85 YECLVFPVSLLSSQTYASEFLNRLDRQDLILDEYF-PAGDDTAIHSLLERLFALM----- 138 Query: 107 QQPSRPCEAELTRALLFTVLSNFLEQSRFIA----LLMYILRSSVRDSVCRIIQSDIQHY 162 Q S LL+ + L+ R+ A L + +V I++ Sbjct: 139 -QDSDEGGKLQCLGLLYQFMGLLLQDRRYTASDKSDLSTHRNIYLLKNVLNYIEAHYTEK 197 Query: 163 WNLRIVASSLCLSPSLLKKKLKN-ENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCG 221 L +A + +S + V R+ A +L +IT +A LCG Sbjct: 198 ITLHELARTAGMSSKYFCHFFSEMTGRTPIDYVNYYRVERACCLLAGIGHSITDIAMLCG 257 Query: 222 YSSTSYFISVFKAFYGLTPLNYLA 245 ++ SYF FK + G++P YL Sbjct: 258 FNDVSYFTRAFKKYKGISPGQYLK 281 >UniRef50_C6IXM8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXM8_9BACL Length = 550 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 119 RALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSL 178 ALLF + + EQ R R + + I + + LS Sbjct: 417 EALLFHLTEYYHEQVRRSMAA---GRPFSVEVIKEYIDHHYFEDIKISMFTERFFLSREY 473 Query: 179 LKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG 237 L K K + + V + RM A ++L + I +++++ GY +YF F+ +Y Sbjct: 474 LMKLFKQQYGCGIHEYVQKVRMDKAKELLDDSSLKIQEISEMLGYKDKNYFSKAFRNYYA 533 Query: 238 LTPLNYLAKQRQK 250 L+P Y +Q ++ Sbjct: 534 LSPSEYRQQQEEE 546 >UniRef50_C6J5Z3 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5Z3_9BACL Length = 524 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 75/195 (38%), Gaps = 8/195 (4%) Query: 62 IINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQ-------QPSRPCE 114 I+D LL L + + + + +I ++ R + + QP + Sbjct: 329 TIDDCLLELFYQGSPLAQKNDVYDLIIRITTQLHADLREINENLYELLKWDTHQPVLLFQ 388 Query: 115 AELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCL 174 E + + F E S + + + + + ++S+++ L+ VA+ Sbjct: 389 FETIHDITSWLRKRFFELSELLYVKKQKQKRKLIQDIMAYVESNLEQKMTLKDVAARFDF 448 Query: 175 SPSLLKKKLKNE-NTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFK 233 +P+ L K E +S + E + + ++L I ++A+ GY + YF FK Sbjct: 449 TPNYLGFLFKEETGRHFSDYLNELKTKRICELLTDPTLKIYEIAERMGYKNIIYFNRQFK 508 Query: 234 AFYGLTPLNYLAKQR 248 G+TP Y + Sbjct: 509 QATGMTPGEYRKTHK 523 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.147 0.407 Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,394,355,421 Number of Sequences: 3077464 Number of extensions: 75097491 Number of successful extensions: 328711 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 16322 Number of HSP's successfully gapped in prelim test: 2695 Number of HSP's that attempted gapping in prelim test: 285291 Number of HSP's gapped (non-prelim): 24856 length of query: 253 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 127 effective length of database: 652,635,892 effective search space: 82884758284 effective search space used: 82884758284 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.7 bits) S2: 92 (39.9 bits)