232 d2hoxa1 Probab=98.89   E-value=1.5e-06  Score=64.71  Aligned_columns=295  Identities=12%

Q ss_pred             HHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHCCCCCE--------EEEECCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             8999999998709----8704892075238999999985489989--------998281038999999977985999208
Q batch____       197 HKEAEQYIARVFN----ADRSYMVTNGTSTANKIVGMYSAPAGST--------ILIDRNCHKSLTHLMMMSDVTPIYFRP  264 (715)
Q Consensus       197 I~eAq~laA~~fG----A~~t~FlvNGST~gn~a~i~a~~~~Gd~--------VLv~RNcHKSv~~gl~Lsga~Pvyl~P  264 (715)
                      +.+.-....+..|    -++-..++||+|.++.+++.++++|||.        |++..-+.-.....+.+.|.....+..
T Consensus       105 L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~  184 (425)
T d2hoxa1         105 LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG  184 (425)
T ss_dssp             HHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999885088678877699946889999999998648886123567743573002377899999855997444247


Q ss_pred             CCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCEEEEEECC-CCCCCCCCHHHHHHHHCCCCEEEECCCHHHCCCCCCC
Q ss_conf             857433336778444899999999995865226338999888-8321121289999874307879916740110258222
Q batch____       265 TRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIY  343 (715)
Q Consensus       265 ~~~~~g~~g~i~~~~i~~~~i~~al~~~p~a~~v~~~vLTsP-TY~Gv~~Di~~I~e~~h~~~LlVDEAHGAh~~Fhp~~  343 (715)
                      +.+.                    +.+.-+.+. ++++++|| +--|.+.+     ..-|+..+++||+++-..      
T Consensus       185 d~~~--------------------~~~~~~~~~-~~~~i~~P~NPtG~v~~-----a~~~~~~~i~De~y~~~~------  232 (425)
T d2hoxa1         185 NAAN--------------------YVNVSNPEQ-YIEMVTSPNNPEGLLRH-----AVIKGCKSIYDMVYYWPH------  232 (425)
T ss_dssp             EGGG--------------------GTTCSCGGG-EEEEEESSCTTTCCCCC-----CSSTTCEEEEECTTCSTT------
T ss_pred             CHHH--------------------HHHHCCCCC-EEEEECCCCCCCCEEEE-----EEECCCEEEEECCCCCCC------
T ss_conf             9889--------------------997248885-79998178888560654-----232396899714323433------


Q ss_pred             CCCCCCCCCHHHCCCEEEEECCCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HHH
Q ss_conf             345789832121795799955553323-43856766645878989999999985268831899999999999-----986
Q batch____       344 EGKCGMSGGRVEGKVIYETQSTHKLLA-AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAA-----MMK  417 (715)
Q Consensus       344 ~~~~~lp~~al~~gAd~vvqStHKtLp-alTQ~S~LHv~~~v~~~~~~~al~~~qSTSPSY~LmASLD~Ar~-----~m~  417 (715)
                           ..+.....+-++++.|.=|+++ +=....++.+.++.-.+++.+.........++-.-++.+..=..     ...
T Consensus       233 -----~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~  307 (425)
T d2hoxa1         233 -----YTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQ  307 (425)
T ss_dssp             -----TSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf             -----233334568549998155101233231018996898999999986410577736899999999960201345655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             13169999999999999999997422223332112465322243111123444334444444577411167069998148
Q batch____       418 GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG  497 (715)
Q Consensus       418 ~e~G~~l~~~~i~~a~~fR~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~lDP~Kl~I~~~~  497 (715)
                      .+.+++.++...+....-|+.+...-.......+....+.                 ++-..-.....--+.-+.+.++.
T Consensus       308 ~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~-----------------~~~~~~~~~~~~~~~f~w~~~~~  370 (425)
T d2hoxa1         308 KGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS-----------------EYCNYFRRMRPPSPSYAWVKCEW  370 (425)
T ss_dssp             TTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC-----------------EEETTTTEEECCCCSEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCEEEEECCC
T ss_conf             5548999999999999999999999863576300345655-----------------43221001377876169986789


Q ss_pred             CCCCHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEE---EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             788701211167889999999982948773589869---99965787998999999999999
Q batch____       498 MEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNL---LFLFSIGIDKTKALSLLRALTDF  556 (715)
Q Consensus       498 ~g~~G~~~~~gi~g~~l~~lL~~~gI~~E~~~~~~v---L~l~sig~t~~~~~~L~~AL~~i  556 (715)
                      -...           .+..+|+++||.+-=.+.+..   .+=+|++.++++++.+++.|.++
T Consensus       371 ~~~~-----------~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~~~e~ld~~l~rL~~~  421 (425)
T d2hoxa1         371 EEDK-----------DCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDM  421 (425)
T ss_dssp             GGGC-----------SHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCHH-----------HHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             8089-----------99999996694997170238988659999139989999999999998