Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	T	L	D	T	L	N	V	M	L	A	V	S	E	E	G	L	I	E	E	M	I	I	A	L	L	A	S	P	Q	L	A	V	F	F	E	K	F	P	R	L	K	A	A	I	T	D	D	V	P	R	W	R	E	A	L	R	S	R
Secondary structure
SS confidence
Disorder		?	?	?											?														?										?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	K	D	A	R	V	P	P	E	L	T	E	E	V	M	C	Y	Q	Q	S	Q	L	L	S	T	P	Q	F	I	V	Q	L	P	Q	I	L	D	L	L	H	R	L	N	S	P	W	A	E	Q	A	R	Q	L	V	D	A	N	S	T	I
Secondary structure
SS confidence
Disorder				?																			?	?	?	?																				?													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	S	A	L	H	T	L	F	L	Q	R	W	R	L	S	L	I	V	Q	A	T	T	L	N	Q	Q	L	L	E	E	E	R	E	Q	L	L	S	E	V	Q	E	R	M	T	L	S	G	Q	L	E	P	I	L	A	D	N	N	T	A	A
Secondary structure
SS confidence
Disorder		?																	?	?	?	?																																?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	R	L	W	D	M	S	A	G	Q	L	K	R	G	D	Y	Q	L	I	V	K	Y	G	E	F	L	N	E	Q	P	E	L	K	R	L	A	E	Q	L	G	R	S	R	E	A	K	S	I	P	R	N	D	A	Q	M	E	T	F	R	T
Secondary structure
SS confidence
Disorder		?	?	?					?		?	?	?	?	?													?														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	V	R	E	P	A	T	V	P	E	Q	V	D	G	L	Q	Q	S	D	D	I	L	R	L	L	P	P	E	L	A	T	L	G	I	T	E	L	E	Y	E	F	Y	R	R	L	V	E	K	Q	L	L	T	Y	R	L	H	G	E	S	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																							?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		R	E	K	V	I	E	R	P	V	V	H	K	D	Y	D	E	Q	P	R	G	P	F	I	V	C	V	D	T	S	G	S	M	G	G	F	N	E	Q	C	A	K	A	F	C	L	A	L	M	R	I	A	L	A	E	N	R	R	C	Y	I
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		M	L	F	S	T	E	I	V	R	Y	E	L	S	G	P	Q	G	I	E	Q	A	I	R	F	L	S	Q	Q	F	R	G	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	Q	S	R	E	W	F	D	A	D	A	V	V	I	S
Secondary structure
SS confidence
Disorder																												?	?																			?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		D	F	I	A	Q	R	L	P	D	D	V	T	S	K	V	K	E	L	Q	R	V	H	Q	H	R	F	H	A	V	A	M	S	A	H	G	K	P	G	I	M	R	I	F	D	H	I	W	R	F	D	T	G	M	R	S	R	L	L	R	R
Secondary structure
SS confidence
Disorder																																																		?				?	?						?
Disorder confidence
		.	.	.
Sequence		W	R	R
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yvr chain A domain 2 Region: 316 - 456 Aligned: 137 Modelled: 141 Confidence: 99.6% Identity: 16% Fold: vWA-like Superfamily: vWA-like Family: RoRNP C-terminal domain-like Phyre2 PDB 2x5n chain A Region: 322 - 460 Aligned: 138 Modelled: 139 Confidence: 99.6% Identity: 10% PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn10; PDBTitle: crystal structure of the sprpn10 vwa domain Phyre2 PDB 2nvo chain A Region: 312 - 456 Aligned: 140 Modelled: 145 Confidence: 99.5% Identity: 20% PDB header:rna binding protein Chain: A: PDB Molecule:ro sixty-related protein, rsr; PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein Phyre2 PDB 2ok5 chain A domain 1 Region: 311 - 461 Aligned: 151 Modelled: 147 Confidence: 99.5% Identity: 14% Fold: vWA-like Superfamily: vWA-like Family: Integrin A (or I) domain Phyre2 PDB 1jey chain B domain 2 Region: 318 - 457 Aligned: 139 Modelled: 140 Confidence: 99.5% Identity: 14% Fold: vWA-like Superfamily: vWA-like Family: Ku80 subunit N-terminal domain Phyre2 PDB 1rs0 chain A Region: 322 - 461 Aligned: 140 Modelled: 140 Confidence: 99.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:complement factor b; PDBTitle: crystal structure analysis of the bb segment of factor b2 complexed with di-isopropyl-phosphate (dip) Phyre2 PDB 2i6s chain A Region: 321 - 470 Aligned: 149 Modelled: 150 Confidence: 99.5% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:complement c2a fragment; PDBTitle: complement component c2a Phyre2 PDB 1jey chain A domain 2 Region: 318 - 483 Aligned: 165 Modelled: 166 Confidence: 99.5% Identity: 14% Fold: vWA-like Superfamily: vWA-like Family: Ku70 subunit N-terminal domain Phyre2 PDB 2x31 chain F Region: 315 - 433 Aligned: 117 Modelled: 119 Confidence: 99.5% Identity: 22% PDB header:ligase Chain: F: PDB Molecule:magnesium-chelatase 60 kda subunit; PDBTitle: modelling of the complex between subunits bchi and bchd of magnesium2 chelatase based on single-particle cryo-em reconstruction at 7.5 ang Phyre2 PDB 2ok5 chain A Region: 322 - 461 Aligned: 140 Modelled: 136 Confidence: 99.4% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:complement factor b; PDBTitle: human complement factor b Phyre2 PDB 3ibs chain A Region: 322 - 456 Aligned: 130 Modelled: 131 Confidence: 99.4% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein batb; PDBTitle: crystal structure of conserved hypothetical protein batb from2 bacteroides thetaiotaomicron Phyre2 PDB 1shu chain X Region: 322 - 464 Aligned: 142 Modelled: 143 Confidence: 99.3% Identity: 15% Fold: vWA-like Superfamily: vWA-like Family: Integrin A (or I) domain Phyre2 PDB 2iue chain A Region: 322 - 430 Aligned: 108 Modelled: 109 Confidence: 99.3% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:pactolus i-domain; PDBTitle: pactolus i-domain: functional switching of the rossmann2 fold Phyre2 PDB 1yvr chain A Region: 312 - 456 Aligned: 137 Modelled: 145 Confidence: 99.3% Identity: 18% PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen Phyre2 PDB 3n2n chain C Region: 322 - 462 Aligned: 140 Modelled: 141 Confidence: 99.3% Identity: 16% PDB header:toxin receptor Chain: C: PDB Molecule:anthrax toxin receptor 1; PDBTitle: the crystal structure of tumor endothelial marker 8 (tem8)2 extracellular domain Phyre2 PDB 2xgg chain B Region: 321 - 452 Aligned: 130 Modelled: 132 Confidence: 99.3% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:microneme protein 2; PDBTitle: structure of toxoplasma gondii micronemal protein 2 a_i2 domain Phyre2 PDB 1q0p chain A Region: 321 - 461 Aligned: 141 Modelled: 141 Confidence: 99.2% Identity: 13% Fold: vWA-like Superfamily: vWA-like Family: Integrin A (or I) domain Phyre2 PDB 2b2x chain B Region: 321 - 458 Aligned: 133 Modelled: 138 Confidence: 99.2% Identity: 11% PDB header:immune system Chain: B: PDB Molecule:integrin alpha-1; PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab Phyre2 PDB 1jey chain B Region: 318 - 457 Aligned: 139 Modelled: 140 Confidence: 99.1% Identity: 12% PDB header:dna binding protein/dna Chain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna Phyre2 PDB 1ijb chain A Region: 307 - 461 Aligned: 155 Modelled: 155 Confidence: 99.1% Identity: 10% Fold: vWA-like Superfamily: vWA-like Family: Integrin A (or I) domain Phyre2 1 d1yvra2 2 c2x5nA_ 3 c2nvoA_ 4 d2ok5a1 5 d1jeyb2 6 c1rs0A_ 7 c2i6sA_ 8 d1jeya2 9 c2x31F_ 10 c2ok5A_ 11 c3ibsA_ 12 d1shux_ 13 c2iueA_ 14 c1yvrA_ 15 c3n2nC_ 16 c2xggB_ 17 d1q0pa_ 18 c2b2xB_ 19 c1jeyB_ 20 d1ijba_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1yvra2 99.6 16 Fold:vWA-like Superfamily:vWA-like Family:RoRNP C-terminal domain-like 2 c2x5nA_ 99.6 10 PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn10; PDBTitle: crystal structure of the sprpn10 vwa domain 3 c2nvoA_ 99.5 20 PDB header:rna binding protein Chain: A: PDB Molecule:ro sixty-related protein, rsr; PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein 4 d2ok5a1 99.5 14 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 5 d1jeyb2 99.5 14 Fold:vWA-like Superfamily:vWA-like Family:Ku80 subunit N-terminal domain 6 c1rs0A_ 99.5 14 PDB header:hydrolase Chain: A: PDB Molecule:complement factor b; PDBTitle: crystal structure analysis of the bb segment of factor b2 complexed with di-isopropyl-phosphate (dip) 7 c2i6sA_ 99.5 13 PDB header:hydrolase Chain: A: PDB Molecule:complement c2a fragment; PDBTitle: complement component c2a 8 d1jeya2 99.5 14 Fold:vWA-like Superfamily:vWA-like Family:Ku70 subunit N-terminal domain 9 c2x31F_ 99.5 22 PDB header:ligase Chain: F: PDB Molecule:magnesium-chelatase 60 kda subunit; PDBTitle: modelling of the complex between subunits bchi and bchd of magnesium2 chelatase based on single-particle cryo-em reconstruction at 7.5 ang 10 c2ok5A_ 99.4 14 PDB header:hydrolase Chain: A: PDB Molecule:complement factor b; PDBTitle: human complement factor b 11 c3ibsA_ 99.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein batb; PDBTitle: crystal structure of conserved hypothetical protein batb from2 bacteroides thetaiotaomicron 12 d1shux_ 99.3 15 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 13 c2iueA_ 99.3 16 PDB header:membrane protein Chain: A: PDB Molecule:pactolus i-domain; PDBTitle: pactolus i-domain: functional switching of the rossmann2 fold 14 c1yvrA_ 99.3 18 PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen 15 c3n2nC_ 99.3 16 PDB header:toxin receptor Chain: C: PDB Molecule:anthrax toxin receptor 1; PDBTitle: the crystal structure of tumor endothelial marker 8 (tem8)2 extracellular domain 16 c2xggB_ 99.3 17 PDB header:hydrolase Chain: B: PDB Molecule:microneme protein 2; PDBTitle: structure of toxoplasma gondii micronemal protein 2 a_i2 domain 17 d1q0pa_ 99.2 13 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 18 c2b2xB_ 99.2 11 PDB header:immune system Chain: B: PDB Molecule:integrin alpha-1; PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab 19 c1jeyB_ 99.1 12 PDB header:dna binding protein/dna Chain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna 20 d1ijba_ 99.1 10 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 21 d1atza_ not modelled 99.0 12 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 22 d1v7pc_ not modelled 99.0 13 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 23 d1u0oc1 not modelled 99.0 9 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 24 d1n3ya_ not modelled 99.0 16 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 25 d1mf7a_ not modelled 98.9 17 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 26 c3gxbB_ not modelled 98.9 12 PDB header:cell adhesion Chain: B: PDB Molecule:von willebrand factor; PDBTitle: crystal structure of vwf a2 domain 27 d1mjna_ not modelled 98.9 14 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 28 d1ck4a_ not modelled 98.9 14 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 29 d1pt6a_ not modelled 98.8 12 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 30 d1pd0a3 not modelled 98.7 11 Fold:vWA-like Superfamily:vWA-like Family:Trunk domain of Sec23/24 31 d1tyeb2 not modelled 98.4 15 Fold:vWA-like Superfamily:vWA-like Family:Integrin A (or I) domain 32 c3ragA_ not modelled 98.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446 33 c1jeqA_ not modelled 98.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:ku70; PDBTitle: crystal structure of the ku heterodimer 34 c3fcuB_ not modelled 97.8 14 PDB header:cell adhesion/blood clotting Chain: B: PDB Molecule:integrin beta-3; PDBTitle: structure of headpiece of integrin aiibb3 in open conformation 35 c1m2oA_ not modelled 96.8 17 PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex 36 c1u8cB_ not modelled 96.8 17 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 37 c1pd0A_ not modelled 96.5 10 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) 38 c3eg9A_ not modelled 96.1 15 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 39 c3egxB_ not modelled 96.0 19 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 40 d2qtva3 not modelled 95.8 17 Fold:vWA-like Superfamily:vWA-like Family:Trunk domain of Sec23/24 41 c3eg9B_ not modelled 95.2 18 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 42 c1m2vB_ not modelled 95.2 19 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 43 c3k6sB_ not modelled 95.0 21 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 44 c3eh2B_ not modelled 94.4 17 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c 45 c3fniA_ not modelled 41.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 46 d2hy5a1 not modelled 40.5 8 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 47 c2yhsA_ not modelled 34.5 13 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy 48 c2h6jI_ not modelled 32.4 19 PDB header:hydrolase Chain: I: PDB Molecule:proteasome beta-type subunit 1; PDBTitle: crystal structure of the beta f145a rhodococcus proteasome (casp2 target) 49 c3gehA_ not modelled 31.2 13 PDB header:hydrolase Chain: A: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn 50 d1ccwa_ not modelled 30.4 12 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 51 d1jx7a_ not modelled 30.4 11 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 52 d1xzpa1 not modelled 29.7 18 Fold:Four-helical up-and-down bundle Superfamily:TrmE connector domain Family:TrmE connector domain 53 c3nzxK_ not modelled 29.4 13 PDB header:hydrolase/hydrolase inhibitor Chain: K: PDB Molecule:proteasome component pre2; PDBTitle: crystal structure of the yeast 20s proteasome in complex with ligand2 2c 54 c3r84O_ not modelled 27.7 16 PDB header:transcription Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11; PDBTitle: structure of the mediator head subcomplex med11/22 55 d1rypl_ not modelled 26.8 15 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 56 d1ofua1 not modelled 26.5 14 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 57 d1skye1 not modelled 25.5 32 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 58 d1ja1a2 not modelled 23.4 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 59 d1fx0b1 not modelled 22.4 28 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 60 d2bo4a1 not modelled 22.1 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MGS-like 61 d1g6ha_ not modelled 21.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 62 c2f9iC_ not modelled 20.9 19 PDB header:transferase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 63 d2a7sa2 not modelled 19.8 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 64 d1vmea1 not modelled 19.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 65 c3hlyA_ not modelled 19.1 10 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 66 d2d1pa1 not modelled 18.0 11 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 67 d2vapa1 not modelled 18.0 14 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 68 c3glmD_ not modelled 17.9 19 PDB header:lyase Chain: D: PDB Molecule:glutaconyl-coa decarboxylase subunit a; PDBTitle: glutaconyl-coa decarboxylase a subunit from clostridium2 symbiosum co-crystallized with crotonyl-coa 69 c1on3E_ not modelled 17.7 19 PDB header:transferase Chain: E: PDB Molecule:methylmalonyl-coa carboxyltransferase 12s PDBTitle: transcarboxylase 12s crystal structure: hexamer assembly2 and substrate binding to a multienzyme core (with3 methylmalonyl-coenzyme a and methylmalonic acid bound) 70 d1xnya2 not modelled 17.5 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 71 c1vrgE_ not modelled 16.4 21 PDB header:ligase Chain: E: PDB Molecule:propionyl-coa carboxylase, beta subunit; PDBTitle: crystal structure of propionyl-coa carboxylase, beta subunit (tm0716)2 from thermotoga maritima at 2.30 a resolution 72 d1l7vc_ not modelled 16.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 73 d1p9pa_ not modelled 16.4 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 74 c3pdiG_ not modelled 16.0 14 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 75 c2cnwF_ not modelled 15.8 15 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 76 d1fhea1 not modelled 15.6 10 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 77 d2jdid1 not modelled 15.5 20 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 78 c3cbnA_ not modelled 15.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mth639; PDBTitle: crystal structure of a conserved protein (mth639) from2 methanobacterium thermoautotrophicum 79 d1qwga_ not modelled 15.3 15 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 80 d1pixa3 not modelled 14.9 19 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 81 d1b8pa1 not modelled 14.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 82 c1w57A_ not modelled 14.5 17 PDB header:transferase Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme; PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn 83 d7mdha1 not modelled 14.3 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 84 d1t98a2 not modelled 14.2 18 Fold:STAT-like Superfamily:MukF C-terminal domain-like Family:MukF C-terminal domain-like 85 c1x0uB_ not modelled 14.0 24 PDB header:lyase Chain: B: PDB Molecule:hypothetical methylmalonyl-coa decarboxylase alpha subunit; PDBTitle: crystal structure of the carboxyl transferase subunit of putative pcc2 of sulfolobus tokodaii 86 d1xw6a1 not modelled 13.9 8 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 87 c2vliB_ not modelled 13.2 27 PDB header:transferase Chain: B: PDB Molecule:antibiotic resistance protein; PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein 88 d5mdha1 not modelled 13.1 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 89 d1n2za_ not modelled 13.1 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 90 d1on3a2 not modelled 13.1 19 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 91 c2r2vB_ not modelled 13.1 28 PDB header:de novo protein Chain: B: PDB Molecule:gcn4 leucine zipper; PDBTitle: sequence determinants of the topology of the lac repressor2 tetrameric coiled coil 92 d1oyja1 not modelled 12.9 13 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 93 c2a7sD_ not modelled 12.9 19 PDB header:ligase Chain: D: PDB Molecule:probable propionyl-coa carboxylase beta chain 5; PDBTitle: crystal structure of the acyl-coa carboxylase, accd5, from2 mycobacterium tuberculosis 94 c3mtvA_ not modelled 12.2 25 PDB header:hydrolase Chain: A: PDB Molecule:papain-like cysteine protease; PDBTitle: the crystal structure of the prrsv nonstructural protein nsp1 95 d1q5rh_ not modelled 12.1 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 96 c3td4D_ not modelled 12.0 24 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 97 d1civa1 not modelled 11.7 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 98 d1irug_ not modelled 11.7 13 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 99 d2i71a1 not modelled 11.6 18 Fold:SSO1389-like Superfamily:SSO1389-like Family:Cas DxTHG

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0